Query 037832
Match_columns 711
No_of_seqs 243 out of 1530
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 04:47:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037832.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037832hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03059 beta-galactosidase; P 100.0 1E-187 2E-192 1601.9 61.5 696 11-711 11-709 (840)
2 KOG0496 Beta-galactosidase [Ca 100.0 1E-151 3E-156 1257.1 39.1 601 26-711 17-620 (649)
3 PF01301 Glyco_hydro_35: Glyco 100.0 4.9E-89 1.1E-93 731.9 17.9 296 35-339 1-318 (319)
4 COG1874 LacA Beta-galactosidas 100.0 6.6E-38 1.4E-42 358.1 10.8 288 29-325 1-332 (673)
5 PF02449 Glyco_hydro_42: Beta- 99.8 5.5E-21 1.2E-25 210.5 12.6 263 50-342 2-373 (374)
6 PF02836 Glyco_hydro_2_C: Glyc 99.5 4.5E-13 9.7E-18 143.3 18.9 192 29-261 1-212 (298)
7 PRK10150 beta-D-glucuronidase; 99.4 2.8E-11 6E-16 141.7 24.1 159 27-220 276-448 (604)
8 PRK10340 ebgA cryptic beta-D-g 99.3 5.4E-11 1.2E-15 146.0 17.0 260 27-341 318-603 (1021)
9 PRK09525 lacZ beta-D-galactosi 99.2 1.6E-10 3.4E-15 141.8 17.5 149 27-220 334-488 (1027)
10 COG3250 LacZ Beta-galactosidas 99.1 1.8E-09 3.9E-14 128.3 16.8 120 27-188 284-409 (808)
11 PF00150 Cellulase: Cellulase 98.9 1.5E-08 3.3E-13 106.1 13.9 161 39-221 4-172 (281)
12 PF13364 BetaGal_dom4_5: Beta- 98.9 2.5E-09 5.4E-14 98.2 5.0 65 617-709 33-100 (111)
13 PF13364 BetaGal_dom4_5: Beta- 98.4 1.5E-06 3.2E-11 80.0 9.3 84 459-549 24-110 (111)
14 PF03198 Glyco_hydro_72: Gluca 98.3 1.3E-05 2.8E-10 85.3 13.7 156 24-217 6-179 (314)
15 PF02837 Glyco_hydro_2_N: Glyc 98.1 9.6E-06 2.1E-10 79.1 9.4 99 466-570 64-164 (167)
16 smart00633 Glyco_10 Glycosyl h 98.0 1.3E-05 2.8E-10 84.2 8.0 116 81-221 3-125 (254)
17 TIGR03356 BGL beta-galactosida 97.8 3.9E-05 8.4E-10 86.6 8.2 97 58-166 54-151 (427)
18 PLN02705 beta-amylase 97.7 7.8E-05 1.7E-09 84.6 8.3 80 56-141 266-357 (681)
19 PLN02905 beta-amylase 97.7 0.0001 2.3E-09 83.8 8.5 112 57-182 285-432 (702)
20 PLN02801 beta-amylase 97.7 0.00012 2.5E-09 82.1 8.5 80 56-141 35-126 (517)
21 PLN00197 beta-amylase; Provisi 97.6 0.00016 3.4E-09 81.7 8.7 80 56-141 125-216 (573)
22 PF13204 DUF4038: Protein of u 97.6 0.0002 4.4E-09 76.7 9.1 225 33-287 2-274 (289)
23 PLN02803 beta-amylase 97.6 0.00019 4.1E-09 80.8 8.6 80 56-141 105-196 (548)
24 PLN02161 beta-amylase 97.5 0.00034 7.4E-09 78.4 8.8 83 56-142 115-207 (531)
25 PF01373 Glyco_hydro_14: Glyco 97.1 0.0005 1.1E-08 75.8 5.1 75 59-136 17-96 (402)
26 COG3693 XynA Beta-1,4-xylanase 97.1 0.0022 4.7E-08 68.5 9.2 132 67-221 55-193 (345)
27 PF00232 Glyco_hydro_1: Glycos 97.0 0.00054 1.2E-08 78.0 4.2 97 58-166 58-156 (455)
28 PF07745 Glyco_hydro_53: Glyco 97.0 0.0026 5.6E-08 69.3 8.9 143 61-222 27-178 (332)
29 PF14488 DUF4434: Domain of un 96.9 0.012 2.6E-07 58.1 12.3 136 53-218 15-158 (166)
30 PF00331 Glyco_hydro_10: Glyco 96.9 0.0012 2.6E-08 71.8 5.5 157 45-222 11-179 (320)
31 PRK15014 6-phospho-beta-glucos 96.8 0.0031 6.7E-08 72.2 8.1 96 58-165 69-167 (477)
32 PRK09852 cryptic 6-phospho-bet 96.7 0.0034 7.4E-08 71.8 7.7 96 58-165 71-169 (474)
33 COG2730 BglC Endoglucanase [Ca 96.7 0.0055 1.2E-07 68.9 9.2 115 56-188 66-193 (407)
34 PRK10150 beta-D-glucuronidase; 96.6 0.011 2.5E-07 69.7 10.9 100 467-572 62-179 (604)
35 PLN02998 beta-glucosidase 96.5 0.0024 5.2E-08 73.4 4.7 96 58-165 82-179 (497)
36 PRK13511 6-phospho-beta-galact 96.5 0.0066 1.4E-07 69.5 8.2 96 58-165 54-150 (469)
37 TIGR01233 lacG 6-phospho-beta- 96.4 0.0084 1.8E-07 68.6 8.4 96 58-165 53-149 (467)
38 PLN02814 beta-glucosidase 96.4 0.003 6.6E-08 72.7 4.6 96 58-165 77-174 (504)
39 PRK09593 arb 6-phospho-beta-gl 96.4 0.0047 1E-07 70.8 5.7 96 58-165 73-171 (478)
40 PRK10340 ebgA cryptic beta-D-g 96.3 0.013 2.8E-07 73.1 9.7 94 470-572 109-206 (1021)
41 PRK09589 celA 6-phospho-beta-g 96.2 0.0052 1.1E-07 70.4 5.2 96 58-165 67-165 (476)
42 PLN02849 beta-glucosidase 96.2 0.0049 1.1E-07 71.0 4.6 96 58-165 79-176 (503)
43 KOG2230 Predicted beta-mannosi 95.9 0.07 1.5E-06 60.6 11.9 149 34-222 328-494 (867)
44 PRK09525 lacZ beta-D-galactosi 95.9 0.027 5.8E-07 70.3 9.6 95 469-572 119-218 (1027)
45 COG3867 Arabinogalactan endo-1 95.9 0.039 8.4E-07 58.4 9.2 115 60-187 65-182 (403)
46 PF02837 Glyco_hydro_2_N: Glyc 95.4 0.015 3.2E-07 56.6 4.0 43 617-659 66-111 (167)
47 PF14871 GHL6: Hypothetical gl 94.8 0.16 3.4E-06 48.3 8.9 97 62-163 4-122 (132)
48 COG2723 BglB Beta-glucosidase/ 94.8 0.03 6.4E-07 63.2 4.5 96 58-165 59-157 (460)
49 PRK09936 hypothetical protein; 93.7 0.24 5.3E-06 52.7 8.3 58 53-116 33-91 (296)
50 PF02638 DUF187: Glycosyl hydr 91.9 0.56 1.2E-05 51.0 8.3 117 56-183 17-161 (311)
51 TIGR01515 branching_enzym alph 91.8 2.8 6.2E-05 49.8 14.7 57 62-118 160-227 (613)
52 COG3934 Endo-beta-mannanase [C 90.9 0.17 3.6E-06 56.9 3.0 157 35-209 3-168 (587)
53 smart00642 Aamy Alpha-amylase 90.8 0.62 1.3E-05 45.9 6.7 66 59-124 20-97 (166)
54 PRK05402 glycogen branching en 90.5 3.6 7.9E-05 49.9 14.2 51 64-117 272-335 (726)
55 smart00812 Alpha_L_fucos Alpha 90.5 34 0.00074 38.4 21.3 244 54-349 80-339 (384)
56 PLN02447 1,4-alpha-glucan-bran 89.9 6.2 0.00014 47.8 15.2 61 58-119 251-322 (758)
57 PRK14706 glycogen branching en 89.8 6.5 0.00014 47.0 15.2 51 64-117 174-237 (639)
58 PF05913 DUF871: Bacterial pro 88.8 0.58 1.3E-05 51.8 5.2 72 46-123 2-73 (357)
59 TIGR00542 hxl6Piso_put hexulos 88.7 5.4 0.00012 42.1 12.4 131 57-215 15-149 (279)
60 PRK12568 glycogen branching en 88.5 10 0.00022 45.9 15.5 59 62-123 274-345 (730)
61 COG1649 Uncharacterized protei 86.8 2.5 5.3E-05 47.6 8.5 122 56-187 62-210 (418)
62 PRK14705 glycogen branching en 86.4 11 0.00024 48.1 14.8 52 63-117 771-835 (1224)
63 PF01229 Glyco_hydro_39: Glyco 86.1 2 4.3E-05 49.6 7.7 68 48-118 29-105 (486)
64 PRK13210 putative L-xylulose 5 85.8 9.5 0.00021 40.1 12.2 131 58-215 16-149 (284)
65 cd00019 AP2Ec AP endonuclease 85.8 7.6 0.00016 41.0 11.4 98 58-184 10-108 (279)
66 PF01261 AP_endonuc_2: Xylose 85.1 2.5 5.4E-05 41.8 6.9 124 64-215 1-128 (213)
67 PRK09441 cytoplasmic alpha-amy 84.7 1.5 3.2E-05 50.5 5.8 61 57-117 18-101 (479)
68 TIGR02631 xylA_Arthro xylose i 83.6 17 0.00038 40.7 13.4 90 57-165 31-125 (382)
69 PRK12313 glycogen branching en 83.4 2 4.4E-05 51.2 6.3 51 64-117 177-240 (633)
70 PRK09997 hydroxypyruvate isome 82.8 19 0.00041 37.5 12.8 42 60-115 17-58 (258)
71 PF00128 Alpha-amylase: Alpha 82.5 1.3 2.7E-05 46.6 3.8 57 61-117 7-72 (316)
72 TIGR02402 trehalose_TreZ malto 82.0 2.3 5.1E-05 49.7 6.0 53 62-117 115-180 (542)
73 PRK01060 endonuclease IV; Prov 81.7 25 0.00055 37.0 13.3 93 60-181 14-109 (281)
74 PRK09989 hypothetical protein; 80.7 23 0.00049 37.0 12.4 43 59-115 16-58 (258)
75 PRK09856 fructoselysine 3-epim 80.4 31 0.00067 36.1 13.4 129 59-215 14-145 (275)
76 PRK13209 L-xylulose 5-phosphat 80.0 19 0.00042 37.9 11.7 130 58-215 21-154 (283)
77 COG3589 Uncharacterized conser 79.3 3.8 8.3E-05 44.5 6.0 74 45-124 3-76 (360)
78 COG0296 GlgB 1,4-alpha-glucan 78.1 3.7 8E-05 48.6 5.9 56 58-116 165-233 (628)
79 PF14307 Glyco_tran_WbsX: Glyc 77.9 21 0.00046 39.3 11.6 135 55-219 55-195 (345)
80 TIGR01531 glyc_debranch glycog 77.7 7.3 0.00016 49.9 8.6 91 56-152 130-235 (1464)
81 TIGR03234 OH-pyruv-isom hydrox 77.5 44 0.00095 34.6 13.3 43 59-115 15-57 (254)
82 PLN02960 alpha-amylase 76.7 4.7 0.0001 49.4 6.4 54 61-117 420-486 (897)
83 PF02679 ComA: (2R)-phospho-3- 76.0 4.9 0.00011 42.2 5.5 52 57-118 83-134 (244)
84 TIGR02403 trehalose_treC alpha 74.9 4.4 9.6E-05 47.5 5.5 60 58-119 27-97 (543)
85 PF14683 CBM-like: Polysacchar 74.7 2 4.4E-05 42.4 2.2 57 642-711 91-147 (167)
86 PRK10785 maltodextrin glucosid 72.2 6.7 0.00015 46.5 6.2 57 61-117 182-246 (598)
87 PF13200 DUF4015: Putative gly 71.9 13 0.00027 40.7 7.7 111 56-167 11-136 (316)
88 PF02065 Melibiase: Melibiase; 71.1 41 0.0009 37.9 11.8 89 51-139 51-148 (394)
89 TIGR02104 pulA_typeI pullulana 70.7 7.4 0.00016 46.2 6.1 55 62-117 168-249 (605)
90 PRK10933 trehalose-6-phosphate 70.5 8.5 0.00018 45.3 6.4 55 60-117 35-101 (551)
91 PRK09505 malS alpha-amylase; R 70.2 8.1 0.00018 46.5 6.3 59 60-118 232-313 (683)
92 PF06832 BiPBP_C: Penicillin-B 69.7 8.8 0.00019 33.5 4.9 49 494-550 35-84 (89)
93 KOG0626 Beta-glucosidase, lact 68.9 8.6 0.00019 44.4 5.8 113 59-181 92-208 (524)
94 smart00518 AP2Ec AP endonuclea 68.4 37 0.00079 35.6 10.2 92 60-181 12-104 (273)
95 TIGR02456 treS_nterm trehalose 68.4 7.1 0.00015 45.7 5.2 58 58-117 28-96 (539)
96 PF11324 DUF3126: Protein of u 68.2 13 0.00029 30.8 5.2 24 499-522 25-48 (63)
97 PRK14582 pgaB outer membrane N 68.1 25 0.00055 42.2 9.7 111 58-186 334-468 (671)
98 PF08531 Bac_rhamnosid_N: Alph 67.9 23 0.0005 35.0 8.0 56 493-549 6-68 (172)
99 cd06593 GH31_xylosidase_YicI Y 67.8 11 0.00023 40.8 6.1 66 56-122 22-91 (308)
100 KOG0496 Beta-galactosidase [Ca 67.5 2.6 5.7E-05 49.4 1.4 31 309-339 325-355 (649)
101 PF13199 Glyco_hydro_66: Glyco 67.2 8.2 0.00018 45.3 5.4 79 58-136 118-211 (559)
102 PRK12677 xylose isomerase; Pro 64.5 57 0.0012 36.7 11.2 88 59-165 32-124 (384)
103 TIGR03849 arch_ComA phosphosul 63.5 13 0.00028 38.9 5.4 52 58-119 71-122 (237)
104 PF03659 Glyco_hydro_71: Glyco 63.1 23 0.00049 39.8 7.7 54 55-117 14-67 (386)
105 TIGR02100 glgX_debranch glycog 62.4 40 0.00088 40.8 10.1 55 63-117 189-265 (688)
106 COG3623 SgaU Putative L-xylulo 61.8 40 0.00087 35.2 8.4 126 56-214 16-150 (287)
107 PF14587 Glyco_hydr_30_2: O-Gl 60.9 56 0.0012 36.7 10.0 122 86-222 93-227 (384)
108 PF08308 PEGA: PEGA domain; I 60.5 10 0.00022 31.5 3.3 39 494-542 3-41 (71)
109 PF01791 DeoC: DeoC/LacD famil 60.5 2.8 6E-05 43.5 -0.1 53 61-116 79-131 (236)
110 KOG2024 Beta-Glucuronidase GUS 60.5 13 0.00028 39.3 4.7 62 456-518 71-135 (297)
111 PLN02361 alpha-amylase 60.0 19 0.00042 40.6 6.4 57 61-117 32-96 (401)
112 cd04908 ACT_Bt0572_1 N-termina 59.5 36 0.00079 27.6 6.5 55 57-115 12-66 (66)
113 cd06592 GH31_glucosidase_KIAA1 59.3 22 0.00049 38.3 6.7 68 53-123 25-96 (303)
114 PRK14510 putative bifunctional 58.7 14 0.00031 47.4 5.8 56 62-117 191-267 (1221)
115 PRK13398 3-deoxy-7-phosphohept 56.3 37 0.00081 36.1 7.6 83 27-117 14-98 (266)
116 TIGR02401 trehalose_TreY malto 56.0 23 0.00049 43.5 6.5 64 56-119 14-87 (825)
117 PF02055 Glyco_hydro_30: O-Gly 55.6 58 0.0013 37.9 9.5 274 41-341 74-424 (496)
118 cd06564 GH20_DspB_LnbB-like Gl 55.2 38 0.00083 36.9 7.7 59 56-117 15-102 (326)
119 cd06589 GH31 The enzymes of gl 54.2 1.7E+02 0.0037 30.8 12.2 65 56-121 22-90 (265)
120 PRK08673 3-deoxy-7-phosphohept 53.0 37 0.00079 37.5 7.0 82 27-117 80-164 (335)
121 PRK03705 glycogen debranching 52.4 23 0.00049 42.6 5.7 55 63-117 184-262 (658)
122 cd06591 GH31_xylosidase_XylS X 52.3 25 0.00055 38.2 5.7 66 56-122 22-91 (319)
123 PLN00196 alpha-amylase; Provis 51.9 32 0.00069 39.2 6.5 59 61-119 47-114 (428)
124 PRK14511 maltooligosyl trehalo 51.0 32 0.0007 42.5 6.7 61 56-120 18-92 (879)
125 PRK14507 putative bifunctional 51.0 29 0.00063 45.9 6.6 60 56-119 756-829 (1693)
126 cd06547 GH85_ENGase Endo-beta- 50.6 50 0.0011 36.5 7.6 114 74-219 32-148 (339)
127 PRK00042 tpiA triosephosphate 50.4 26 0.00057 36.9 5.2 50 63-118 78-127 (250)
128 smart00481 POLIIIAc DNA polyme 49.4 49 0.0011 26.9 5.7 44 59-115 16-59 (67)
129 TIGR00419 tim triosephosphate 49.2 33 0.00071 35.2 5.5 45 63-117 73-117 (205)
130 TIGR02455 TreS_stutzeri trehal 48.7 43 0.00092 40.0 6.9 75 56-134 76-175 (688)
131 PRK09875 putative hydrolase; P 48.5 93 0.002 33.6 9.1 89 28-136 7-95 (292)
132 COG5309 Exo-beta-1,3-glucanase 48.0 2.4E+02 0.0052 30.3 11.6 120 56-223 61-180 (305)
133 COG3915 Uncharacterized protei 47.0 90 0.0019 29.9 7.5 47 63-115 39-87 (155)
134 cd06565 GH20_GcnA-like Glycosy 46.9 95 0.0021 33.5 9.0 59 56-117 15-80 (301)
135 cd06602 GH31_MGAM_SI_GAA This 46.9 34 0.00073 37.7 5.6 74 50-124 13-93 (339)
136 TIGR02102 pullulan_Gpos pullul 46.7 31 0.00067 43.9 5.8 21 97-117 555-575 (1111)
137 TIGR00677 fadh2_euk methylenet 45.7 71 0.0015 34.2 7.7 106 44-166 130-251 (281)
138 cd06598 GH31_transferase_CtsZ 45.3 41 0.00088 36.6 5.9 67 56-122 22-95 (317)
139 PRK08645 bifunctional homocyst 44.8 75 0.0016 38.0 8.4 108 41-165 461-578 (612)
140 cd06563 GH20_chitobiase-like T 44.7 99 0.0022 34.2 8.9 59 56-117 16-106 (357)
141 PF12876 Cellulase-like: Sugar 44.5 30 0.00066 30.1 3.9 48 172-219 6-62 (88)
142 cd06603 GH31_GANC_GANAB_alpha 43.0 41 0.00088 36.9 5.5 74 50-124 13-91 (339)
143 PLN02877 alpha-amylase/limit d 42.5 42 0.00092 42.0 6.0 20 98-117 467-486 (970)
144 cd00311 TIM Triosephosphate is 41.9 53 0.0012 34.5 5.9 50 63-118 76-125 (242)
145 cd06599 GH31_glycosidase_Aec37 41.9 56 0.0012 35.5 6.3 66 57-122 28-98 (317)
146 cd06418 GH25_BacA-like BacA is 41.7 1.3E+02 0.0028 30.9 8.6 91 55-167 49-140 (212)
147 PRK09856 fructoselysine 3-epim 41.3 34 0.00073 35.8 4.4 55 59-117 91-149 (275)
148 PLN02826 dihydroorotate dehydr 41.3 3.9E+02 0.0084 30.4 13.0 59 45-107 188-249 (409)
149 cd06568 GH20_SpHex_like A subg 41.1 51 0.0011 36.2 5.8 62 56-117 16-95 (329)
150 cd06600 GH31_MGAM-like This fa 40.9 46 0.001 36.2 5.5 72 50-122 13-89 (317)
151 PRK09267 flavodoxin FldA; Vali 39.9 1.8E+02 0.0038 28.2 9.0 74 38-114 44-117 (169)
152 PF10566 Glyco_hydro_97: Glyco 39.8 98 0.0021 33.2 7.5 114 56-177 30-159 (273)
153 PF07691 PA14: PA14 domain; I 39.8 1.4E+02 0.003 27.7 7.9 71 471-549 47-123 (145)
154 COG0366 AmyA Glycosidases [Car 38.5 46 0.001 37.8 5.3 53 62-117 33-97 (505)
155 cd06595 GH31_xylosidase_XylS-l 38.2 68 0.0015 34.4 6.2 66 56-121 23-98 (292)
156 PRK14565 triosephosphate isome 38.1 54 0.0012 34.4 5.2 49 63-118 77-126 (237)
157 TIGR02103 pullul_strch alpha-1 37.7 51 0.0011 41.1 5.6 21 97-117 404-424 (898)
158 PLN02784 alpha-amylase 37.2 70 0.0015 39.5 6.6 57 61-117 524-588 (894)
159 cd02742 GH20_hexosaminidase Be 37.2 94 0.002 33.5 7.1 60 55-117 13-92 (303)
160 cd06601 GH31_lyase_GLase GLase 35.9 1.9E+02 0.0041 31.9 9.3 72 50-122 13-89 (332)
161 PF01261 AP_endonuc_2: Xylose 35.8 38 0.00083 33.1 3.6 63 57-120 70-135 (213)
162 cd06562 GH20_HexA_HexB-like Be 35.6 1.7E+02 0.0036 32.4 8.9 62 56-117 16-90 (348)
163 PLN02429 triosephosphate isome 35.5 60 0.0013 35.5 5.2 46 63-118 139-188 (315)
164 PRK12858 tagatose 1,6-diphosph 35.5 42 0.00091 37.1 4.1 62 54-117 102-163 (340)
165 cd06604 GH31_glucosidase_II_Ma 35.3 67 0.0015 35.2 5.7 72 50-122 13-89 (339)
166 PRK07534 methionine synthase I 35.0 4.2E+02 0.0092 29.2 11.8 73 100-210 221-295 (336)
167 cd06545 GH18_3CO4_chitinase Th 34.7 1.7E+02 0.0037 30.5 8.4 96 88-212 36-132 (253)
168 smart00854 PGA_cap Bacterial c 33.9 2.4E+02 0.0052 29.1 9.3 44 62-114 64-107 (239)
169 cd06570 GH20_chitobiase-like_1 33.6 80 0.0017 34.4 5.8 63 55-117 15-88 (311)
170 COG0149 TpiA Triosephosphate i 33.2 85 0.0018 33.2 5.7 49 63-118 80-129 (251)
171 cd06416 GH25_Lys1-like Lys-1 i 33.2 81 0.0018 31.6 5.5 89 46-137 54-157 (196)
172 PRK13210 putative L-xylulose 5 33.2 56 0.0012 34.2 4.6 59 58-117 94-153 (284)
173 PF08924 DUF1906: Domain of un 33.2 1.1E+02 0.0025 29.1 6.1 91 56-166 36-127 (136)
174 PRK09432 metF 5,10-methylenete 33.2 1.1E+02 0.0024 33.0 6.9 88 63-166 168-266 (296)
175 PTZ00333 triosephosphate isome 33.1 86 0.0019 33.2 5.8 50 63-118 81-130 (255)
176 PF01055 Glyco_hydro_31: Glyco 32.1 59 0.0013 36.8 4.8 68 56-124 41-110 (441)
177 PRK09997 hydroxypyruvate isome 31.9 58 0.0013 33.9 4.3 60 58-117 85-144 (258)
178 PRK14566 triosephosphate isome 31.9 92 0.002 33.2 5.7 50 63-118 87-136 (260)
179 KOG0259 Tyrosine aminotransfer 31.0 57 0.0012 36.5 4.1 87 26-116 150-238 (447)
180 PF14701 hDGE_amylase: glucano 31.0 1.6E+02 0.0036 33.5 7.9 104 56-165 20-143 (423)
181 PRK15492 triosephosphate isome 30.9 97 0.0021 33.0 5.8 50 63-118 86-135 (260)
182 cd00544 CobU Adenosylcobinamid 30.6 3.2E+02 0.007 26.8 9.1 49 153-209 101-149 (169)
183 cd06597 GH31_transferase_CtsY 30.2 99 0.0022 34.0 6.0 73 50-122 13-110 (340)
184 PF07488 Glyco_hydro_67M: Glyc 30.0 3.5E+02 0.0076 29.6 9.6 138 55-215 54-191 (328)
185 TIGR03234 OH-pyruv-isom hydrox 30.0 62 0.0013 33.5 4.2 59 58-117 84-143 (254)
186 KOG4039 Serine/threonine kinas 29.9 90 0.002 31.6 4.9 68 52-123 103-172 (238)
187 COG1523 PulA Type II secretory 29.9 73 0.0016 38.6 5.1 55 63-117 205-285 (697)
188 TIGR00676 fadh2 5,10-methylene 29.9 1.6E+02 0.0035 31.3 7.3 106 43-165 125-246 (272)
189 COG5520 O-Glycosyl hydrolase [ 29.8 8.4E+02 0.018 27.4 13.7 86 106-212 111-206 (433)
190 COG1099 Predicted metal-depend 29.6 2.2E+02 0.0047 29.9 7.7 54 61-118 14-71 (254)
191 KOG3833 Uncharacterized conser 29.6 58 0.0013 35.4 3.8 53 59-117 444-499 (505)
192 KOG0683 Glutamine synthetase [ 29.3 67 0.0014 35.6 4.2 45 84-129 202-258 (380)
193 PRK14582 pgaB outer membrane N 29.3 1.8E+02 0.0038 35.3 8.1 62 54-115 68-137 (671)
194 PF00728 Glyco_hydro_20: Glyco 29.0 98 0.0021 33.6 5.7 61 56-116 16-92 (351)
195 TIGR00433 bioB biotin syntheta 28.6 75 0.0016 33.7 4.6 52 61-115 123-176 (296)
196 PTZ00372 endonuclease 4-like p 28.3 8.3E+02 0.018 27.9 12.9 78 62-165 145-228 (413)
197 TIGR01698 PUNP purine nucleoti 28.2 81 0.0018 33.1 4.6 40 37-76 47-87 (237)
198 COG2876 AroA 3-deoxy-D-arabino 27.9 1.8E+02 0.0038 31.2 6.9 73 56-159 57-131 (286)
199 PF03644 Glyco_hydro_85: Glyco 27.5 70 0.0015 34.9 4.1 115 73-219 27-143 (311)
200 PF01120 Alpha_L_fucos: Alpha- 27.4 8.6E+02 0.019 26.7 16.6 233 62-345 95-342 (346)
201 PRK14567 triosephosphate isome 27.3 1.2E+02 0.0027 32.1 5.7 50 63-118 77-126 (253)
202 COG1891 Uncharacterized protei 27.1 20 0.00044 35.7 -0.1 66 45-116 118-186 (235)
203 PRK09485 mmuM homocysteine met 26.9 6.5E+02 0.014 27.1 11.5 99 60-209 202-303 (304)
204 COG1306 Uncharacterized conser 26.9 96 0.0021 33.6 4.8 59 56-117 75-144 (400)
205 PF02228 Gag_p19: Major core p 26.8 24 0.00051 30.4 0.3 37 56-109 20-56 (92)
206 TIGR02635 RhaI_grampos L-rhamn 26.7 8.6E+02 0.019 27.4 12.6 113 27-165 11-126 (378)
207 PRK08645 bifunctional homocyst 26.7 7E+02 0.015 29.8 12.6 100 60-210 186-287 (612)
208 cd01299 Met_dep_hydrolase_A Me 26.5 1.2E+02 0.0025 32.8 5.7 61 56-117 118-180 (342)
209 COG1735 Php Predicted metal-de 26.1 2.5E+02 0.0055 30.6 7.8 58 62-136 52-109 (316)
210 PLN03059 beta-galactosidase; P 26.1 1.4E+02 0.003 37.0 6.5 40 471-517 620-659 (840)
211 cd06569 GH20_Sm-chitobiase-lik 26.1 1.3E+02 0.0028 34.5 6.1 73 32-117 6-117 (445)
212 PLN02561 triosephosphate isome 26.0 1.3E+02 0.0028 31.9 5.7 50 63-118 80-129 (253)
213 COG2884 FtsE Predicted ATPase 25.8 55 0.0012 33.5 2.7 16 644-659 55-70 (223)
214 PTZ00372 endonuclease 4-like p 25.7 3.3E+02 0.0071 31.0 9.1 84 34-118 149-240 (413)
215 PLN03036 glutamine synthetase; 25.0 1.8E+02 0.0039 33.3 6.9 65 59-129 231-307 (432)
216 PF08306 Glyco_hydro_98M: Glyc 24.9 73 0.0016 34.8 3.6 60 44-114 104-170 (324)
217 cd04882 ACT_Bt0572_2 C-termina 24.9 1.7E+02 0.0036 22.9 5.0 54 58-113 11-64 (65)
218 PRK12331 oxaloacetate decarbox 24.7 1.5E+02 0.0033 34.0 6.3 55 51-117 89-143 (448)
219 COG3684 LacD Tagatose-1,6-bisp 24.6 59 0.0013 34.5 2.7 52 63-117 116-167 (306)
220 TIGR00587 nfo apurinic endonuc 24.3 4.5E+02 0.0098 27.7 9.5 79 61-165 14-98 (274)
221 COG0167 PyrD Dihydroorotate de 23.7 6E+02 0.013 27.8 10.3 128 56-223 107-250 (310)
222 PRK12595 bifunctional 3-deoxy- 23.6 7.6E+02 0.016 27.5 11.4 83 27-117 105-189 (360)
223 PF00121 TIM: Triosephosphate 23.4 70 0.0015 33.6 3.1 51 62-118 75-125 (244)
224 TIGR01361 DAHP_synth_Bsub phos 23.4 2E+02 0.0044 30.5 6.5 82 27-117 12-96 (260)
225 cd07937 DRE_TIM_PC_TC_5S Pyruv 23.3 1.8E+02 0.004 30.9 6.3 50 55-116 88-137 (275)
226 PF04914 DltD_C: DltD C-termin 22.6 70 0.0015 30.4 2.6 50 98-166 37-87 (130)
227 TIGR00542 hxl6Piso_put hexulos 22.6 1.1E+02 0.0024 32.1 4.5 58 59-117 95-153 (279)
228 PRK05265 pyridoxine 5'-phospha 22.5 1.3E+02 0.0028 31.6 4.8 46 60-123 115-161 (239)
229 cd00537 MTHFR Methylenetetrahy 22.5 2.7E+02 0.0059 29.3 7.5 92 61-166 150-250 (274)
230 COG2179 Predicted hydrolase of 21.8 1.8E+02 0.0039 29.1 5.2 45 63-116 19-68 (175)
231 COG1453 Predicted oxidoreducta 21.7 3.3E+02 0.0072 30.5 7.8 91 39-165 9-107 (391)
232 KOG0470 1,4-alpha-glucan branc 21.7 95 0.0021 37.5 3.9 57 61-117 258-331 (757)
233 PF05763 DUF835: Protein of un 21.3 6.7E+02 0.014 23.9 9.0 103 89-212 1-111 (136)
234 cd00019 AP2Ec AP endonuclease 21.2 86 0.0019 32.9 3.3 57 58-118 85-144 (279)
235 cd07944 DRE_TIM_HOA_like 4-hyd 21.1 1.5E+02 0.0034 31.3 5.2 66 53-118 15-81 (266)
236 PF07071 DUF1341: Protein of u 21.0 2E+02 0.0044 29.5 5.6 43 60-117 137-182 (218)
237 PF13380 CoA_binding_2: CoA bi 21.0 1.6E+02 0.0036 27.0 4.7 44 55-114 63-106 (116)
238 PRK04302 triosephosphate isome 20.9 1.8E+02 0.0039 29.8 5.5 60 50-119 62-123 (223)
239 PF14307 Glyco_tran_WbsX: Glyc 20.9 1.4E+02 0.0031 32.8 5.1 43 32-77 150-194 (345)
240 PF07755 DUF1611: Protein of u 20.7 73 0.0016 34.6 2.6 61 42-117 34-95 (301)
241 PF07905 PucR: Purine cataboli 20.6 5E+02 0.011 23.9 7.9 67 38-117 40-106 (123)
242 PLN02389 biotin synthase 20.6 1.2E+02 0.0025 34.1 4.3 47 60-114 177-230 (379)
243 KOG1065 Maltase glucoamylase a 20.5 1.7E+02 0.0036 36.0 5.7 59 60-123 313-377 (805)
244 PRK10076 pyruvate formate lyas 20.4 3.2E+02 0.007 28.0 7.2 127 57-215 53-209 (213)
245 KOG0622 Ornithine decarboxylas 20.4 1.3E+02 0.0029 33.9 4.5 63 55-118 190-253 (448)
No 1
>PLN03059 beta-galactosidase; Provisional
Probab=100.00 E-value=1.1e-187 Score=1601.94 Aligned_cols=696 Identities=63% Similarity=1.151 Sum_probs=640.2
Q ss_pred HHHHHHHHHhhhc-ccceEEEEcCCcEEECCEEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCc
Q 037832 11 SLLLLFISSWEIC-SVKSTVTYDRKGLIINGQRRILFSGSIHYPRSTPEMWPDLLKKAKDGGLDIVDTYVFWNGHEPTRG 89 (711)
Q Consensus 11 ~~~~~~~~~~~~~-~~~~~v~~d~~~~~i~G~p~~~~sg~~hy~r~~~~~W~~~l~~~ka~G~N~V~~yv~Wn~hEp~~G 89 (711)
+|+|+|++++.+. -...+|++|+++|+|||+|++|+||+|||||++|++|+|+|+||||+|+|||+||||||+|||+||
T Consensus 11 ~~~~~~~~~~~~~~~~~~~v~~d~~~f~idG~p~~i~sG~iHY~R~~p~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~G 90 (840)
T PLN03059 11 LLFLLFLLSSSWVSHGSASVSYDHRAFIINGQRRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPG 90 (840)
T ss_pred HHHHHHHhhhhhhccceeEEEEeCCEEEECCEEEEEEEeCcccCcCCHHHHHHHHHHHHHcCCCeEEEEecccccCCCCC
Confidence 3444555444432 235799999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeecchhHHHHHHHHHHcCCEEEeecCcccccccCCCCCCceecccCCcccccCChhHHHHHHHHHHHHHHHHHhccc
Q 037832 90 KFYFEGRYDLVRFIKLAQQAGLYVTLRIGPYACAEWNFGAFPAWLKFIPGMEFRIDNQPFELEMQKWVTKIVDMLKAEKL 169 (711)
Q Consensus 90 ~~df~g~~dl~~fl~~a~~~gL~vilr~GPyicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~ 169 (711)
+|||+|++||++||++|+|+||+|||||||||||||++||+|.||+++|+|++||+|++|+++|++|+++|+++++++++
T Consensus 91 ~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~~~~~i~~Rs~d~~fl~~v~~~~~~l~~~l~~~~l 170 (840)
T PLN03059 91 NYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLKYVPGIEFRTDNGPFKAAMQKFTEKIVDMMKSEKL 170 (840)
T ss_pred eeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCchhhhcCCCcccccCCHHHHHHHHHHHHHHHHHHhhcce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998899
Q ss_pred ccccCCceEeecccccccchhcccCcchHHHHHHHHHHHHhcCCccceEecCCCCCCcccccCCCCCccCCCCCCCCCCC
Q 037832 170 FETQGGPIILSQIENEFELVEWNLGDRARVYGQWAAHMAIGLNITVPWIMCKQANAPDPIIDTCNDFYCDWFSPNKDYKP 249 (711)
Q Consensus 170 ~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~P 249 (711)
++++||||||+|||||||++...++.+|++||+||+++++++|++|||+||++.++++++++|||+.+|+.|.+.++.+|
T Consensus 171 ~~~~GGPIImvQIENEYGs~~~~~~~~d~~Yl~~l~~~~~~~Gi~VPl~t~dg~~~~~~v~~t~Ng~~~~~f~~~~~~~P 250 (840)
T PLN03059 171 FEPQGGPIILSQIENEYGPVEWEIGAPGKAYTKWAADMAVKLGTGVPWVMCKQEDAPDPVIDTCNGFYCENFKPNKDYKP 250 (840)
T ss_pred eecCCCcEEEEEecccccceecccCcchHHHHHHHHHHHHHcCCCcceEECCCCCCCccceecCCCchhhhcccCCCCCC
Confidence 99999999999999999998766777899999999999999999999999999888888999999999999988888899
Q ss_pred ccccccccccccccCCCCCcCCHHHHHHHHHHHHHhCCcceeeeEeeccCCCCCCCCCC-ccccccCCCCCCCCCCCCCc
Q 037832 250 KMWTENWTAWVQQFGTPPLYRPHEDLAYSVLKFIQTGGSMNNYYMYHGGTNFDRTNGAF-VATSYDYDGVIDEYGLPSEP 328 (711)
Q Consensus 250 ~~~~E~~~Gwf~~wG~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~g~~-~~TSYDYdApL~E~G~~~tp 328 (711)
+||||||+|||++||+++++|+++|++.+++++|++|+|++||||||||||||||+|+. ++|||||||||+|+|++++|
T Consensus 251 ~m~tE~w~GWf~~wG~~~~~r~~~d~a~~~~~~l~~g~S~~N~YMfhGGTNFG~~~Ga~~~~TSYDYdAPL~E~G~~t~p 330 (840)
T PLN03059 251 KMWTEAWTGWYTEFGGAVPNRPAEDLAFSVARFIQNGGSFINYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLPREP 330 (840)
T ss_pred cEEeccCchhHhhcCCCCCcCCHHHHHHHHHHHHHcCCeeEEeeeccCcCCcccccCCCccccccccCCccccccCcchh
Confidence 99999999999999999999999999999999999999988999999999999999875 89999999999999999667
Q ss_pred hHHHHHHHHHHHhhhCCCCCCCCCcccCCCCCccceecCCCCCceeEEeecCCCCCceeEEecCceeecCCcceeecCCC
Q 037832 329 KWGHLSELHKVIKTCEPTILNSEPTVIPLGPHQEARVFNPPTGGCVAFLSNHDPNLPVNLTFWNLQYELPPWSISVLPDC 408 (711)
Q Consensus 329 Ky~~lr~l~~~i~~~~~~l~~~~p~~~~~g~~~~~~~y~~~~~~~~~fl~n~~~~~~~~v~~~~~~~~lp~~sv~il~~~ 408 (711)
||.+||++|.+++.++++|+..+|....+|+.+++++|...+ .|++|+.|.+.+.+++|+|+|++|.||+|||||||||
T Consensus 331 Ky~~lr~l~~~~~~~~~~l~~~~p~~~~lg~~~ea~~y~~~~-~caaFl~n~~~~~~~~v~f~g~~y~lp~~Svsilpd~ 409 (840)
T PLN03059 331 KWGHLRDLHKAIKLCEPALVSVDPTVTSLGSNQEAHVFKSKS-ACAAFLANYDTKYSVKVTFGNGQYDLPPWSVSILPDC 409 (840)
T ss_pred HHHHHHHHHHHHHhcCccccCCCCceeccCCceeEEEccCcc-chhhheeccCCCCceeEEECCcccccCccceeecccc
Confidence 999999999999999998888888888899999999999776 7999999999889999999999999999999999999
Q ss_pred ccceecceeeeeccccccccccccccccccccccCccCCCCCCcccccccccccCCCCCCcceEEEEEEecCCCCCCccc
Q 037832 409 RTAVYNSAIVTARKTEKKMIPFQGALQNWESYSEGTSSSDSSKTFVKYGLTEHLFLTRDTTDYLWYTTEVFIDPSEGFLY 488 (711)
Q Consensus 409 ~~v~~~t~~v~~~~~~~~~~~~~~~~~~w~~~~e~~~~~~~~~~~~~~~~~Eql~~t~d~~GYl~Y~t~v~~~~~~~~~~ 488 (711)
++++|||++|++|++.+++.+. ...+.|+++.|++.+..++.+++.+.++||+++|+|.+||+||+|+|....++..++
T Consensus 410 ~~~lfnta~v~~q~~~~~~~~~-~~~~~w~~~~e~~~~~~~~~~~~~e~l~e~~n~t~d~~dYlwY~t~i~~~~~~~~~~ 488 (840)
T PLN03059 410 KTAVFNTARLGAQSSQMKMNPV-GSTFSWQSYNEETASAYTDDTTTMDGLWEQINVTRDATDYLWYMTEVHIDPDEGFLK 488 (840)
T ss_pred cceeeeccccccccceeecccc-cccccceeecccccccccCCCcchhhHHHhhcccCCCCceEEEEEEEeecCCccccc
Confidence 9999999999999877755433 234689999999535455668888899999999999999999999998876664456
Q ss_pred CCCCCeeeecccceEEEEEECCEEEEEEecccCCCceEEEeeeeecCCccEEEEEEecCCCccccccccccCccccccEE
Q 037832 489 NGQDPLLNIMSAGHGLNVYVNDQLQGLHHGSLETPQVTFSKKVKLRGGVNKISLQSVAVGLPNIGTQFEKWNLGVLGPVT 568 (711)
Q Consensus 489 ~g~~~~L~i~~~~D~~~VfVng~~vG~~~~~~~~~~~~~~~~~~l~~g~n~L~ILven~Gr~n~G~~~~~~~kGI~g~V~ 568 (711)
++.+++|+|.+++|++||||||+++|+++++.....++++.+++++.|.|+|+||||||||+|||++|+++.|||+|+|+
T Consensus 489 ~~~~~~L~v~~~~d~~~vFVNg~~~Gt~~~~~~~~~~~~~~~v~l~~g~n~L~iLse~vG~~NyG~~le~~~kGI~g~V~ 568 (840)
T PLN03059 489 TGQYPVLTIFSAGHALHVFINGQLAGTVYGELSNPKLTFSQNVKLTVGINKISLLSVAVGLPNVGLHFETWNAGVLGPVT 568 (840)
T ss_pred cCCCceEEEcccCcEEEEEECCEEEEEEEeecCCcceEEecccccCCCceEEEEEEEeCCCCccCcccccccccccccEE
Confidence 77789999999999999999999999999987677788888888999999999999999999999999999999999999
Q ss_pred EcCccCCcccCccCCceEEcCCCCccCCCCCCCCCCCCccccCCCCCCCCCceEEEEEEeCCCCCCceEEecCCCceEEE
Q 037832 569 LSGLNEGTRDLAKQNWTYKIGLEGEDLGLPFTGGNSSVQWVQGPTLAKNWPGTWYKTTFDAPEGNDPLALDMRTMSKGLI 648 (711)
Q Consensus 569 l~g~~~g~~~l~~~~W~~~~~l~ge~~~~~~~~~~~~~~w~~~~~~~~~~~~~~Yk~tF~~p~~~d~~~Ld~~g~gKG~v 648 (711)
|+|.++++.+|+++.|.|+++|+||.++|+..++...+.|++.+..+..+||+|||++|++|++.|||||||++||||+|
T Consensus 569 i~g~~~g~~dls~~~W~y~lgL~GE~~~i~~~~~~~~~~W~~~~~~~~~~p~twYK~~Fd~p~g~Dpv~LDm~gmGKG~a 648 (840)
T PLN03059 569 LKGLNEGTRDLSGWKWSYKIGLKGEALSLHTITGSSSVEWVEGSLLAQKQPLTWYKTTFDAPGGNDPLALDMSSMGKGQI 648 (840)
T ss_pred EecccCCceecccCccccccCccceeccccccCCCCCccccccccccCCCCceEEEEEEeCCCCCCCEEEecccCCCeeE
Confidence 99998888999988999999999999999987656678998765444556799999999999999999999999999999
Q ss_pred EEcCcccceecccccc-cCCCCCCCcccCCccCcccccCCCCCCceeeeecCCCCccCCCCeeC
Q 037832 649 WVNGHGVGRYWSASIA-YGNCSPHPCYYGGFMNNQKCLSGCGKPSQIWYHVPRSWLKPTGNLLV 711 (711)
Q Consensus 649 wVNG~nlGRYW~~~~~-~g~~G~~~~~~~G~~~~~~~~~~~g~PQqtlYhVP~~~Lk~g~N~lV 711 (711)
||||+||||||+.+.+ +|| + .|+|+|.|+++||+||||+|||+|||||++|||+|+|+||
T Consensus 649 WVNG~nIGRYW~~~a~~~gC-~--~c~y~g~~~~~kc~~~cggP~q~lYHVPr~~Lk~g~N~lV 709 (840)
T PLN03059 649 WINGQSIGRHWPAYTAHGSC-N--GCNYAGTFDDKKCRTNCGEPSQRWYHVPRSWLKPSGNLLI 709 (840)
T ss_pred EECCcccccccccccccCCC-c--cccccccccchhhhccCCCceeEEEeCcHHHhccCCceEE
Confidence 9999999999976433 465 5 7999999999999999999999999999999999999986
No 2
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.3e-151 Score=1257.07 Aligned_cols=601 Identities=54% Similarity=1.003 Sum_probs=558.4
Q ss_pred ceEEEEcCCcEEECCEEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeeecchhHHHHHHH
Q 037832 26 KSTVTYDRKGLIINGQRRILFSGSIHYPRSTPEMWPDLLKKAKDGGLDIVDTYVFWNGHEPTRGKFYFEGRYDLVRFIKL 105 (711)
Q Consensus 26 ~~~v~~d~~~~~i~G~p~~~~sg~~hy~r~~~~~W~~~l~~~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~ 105 (711)
.+.|++|+++|++||+|++++||++||+|++|++|+++|+|||++|+|+|+||||||.|||+||+|||+|+.||++||++
T Consensus 17 ~~~v~yd~~~~~idG~r~~~isGsIHY~R~~pe~W~~~i~k~k~~Gln~IqtYVfWn~Hep~~g~y~FsG~~DlvkFikl 96 (649)
T KOG0496|consen 17 SFNVTYDKRSLLIDGQRFILISGSIHYPRSTPEMWPDLIKKAKAGGLNVIQTYVFWNLHEPSPGKYDFSGRYDLVKFIKL 96 (649)
T ss_pred eeEEeccccceeecCCeeEEEEeccccccCChhhhHHHHHHHHhcCCceeeeeeecccccCCCCcccccchhHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCEEEeecCcccccccCCCCCCceecccCCcccccCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeeccccc
Q 037832 106 AQQAGLYVTLRIGPYACAEWNFGAFPAWLKFIPGMEFRIDNQPFELEMQKWVTKIVDMLKAEKLFETQGGPIILSQIENE 185 (711)
Q Consensus 106 a~~~gL~vilr~GPyicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENE 185 (711)
|++.||+|+||+||||||||++||+|.||..+|++.+||+|++|+++|++|+++|++++| +|+++|||||||+|||||
T Consensus 97 ~~~~GLyv~LRiGPyIcaEw~~GG~P~wL~~~pg~~~Rt~nepfk~~~~~~~~~iv~~mk--~L~~~qGGPIIl~QIENE 174 (649)
T KOG0496|consen 97 IHKAGLYVILRIGPYICAEWNFGGLPWWLRNVPGIVFRTDNEPFKAEMERWTTKIVPMMK--KLFASQGGPIILVQIENE 174 (649)
T ss_pred HHHCCeEEEecCCCeEEecccCCCcchhhhhCCceEEecCChHHHHHHHHHHHHHHHHHH--HHHhhcCCCEEEEEeech
Confidence 999999999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred ccchhcccCcchHHHHHHHHHHHHhcCCccceEecCCCCCCcccccCCCCCcc-CCCC-CCCCCCCcccccccccccccc
Q 037832 186 FELVEWNLGDRARVYGQWAAHMAIGLNITVPWIMCKQANAPDPIIDTCNDFYC-DWFS-PNKDYKPKMWTENWTAWVQQF 263 (711)
Q Consensus 186 yg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~p~~P~~~~E~~~Gwf~~w 263 (711)
||.+...|++.+++|+.|-+.|+...+.++||+||.+.++|+.++++||+.+| +.|. +++|++|+||||||+|||++|
T Consensus 175 YG~~~~~~~~~~k~y~~w~a~m~~~l~~gvpw~mCk~~dapd~~in~cng~~c~~~f~~pn~~~kP~~wtE~wtgwf~~w 254 (649)
T KOG0496|consen 175 YGNYLRALGAEGKSYLKWAAVLATSLGTGVPWVMCKQDDAPDPGINTCNGFYCGDTFKRPNSPNKPLVWTENWTGWFTHW 254 (649)
T ss_pred hhHHHHHHHHHHHHhhccceEEEEecCCCCceeEecCCCCCCccccccCCccchhhhccCCCCCCCceecccccchhhhh
Confidence 99887778888999999999999999999999999999999999999999999 8887 899999999999999999999
Q ss_pred CCCCCcCCHHHHHHHHHHHHHhCCcceeeeEeeccCCCCCCCCCCccccccCCCCCCCCCCCCCchHHHHHHHHHHHhhh
Q 037832 264 GTPPLYRPHEDLAYSVLKFIQTGGSMNNYYMYHGGTNFDRTNGAFVATSYDYDGVIDEYGLPSEPKWGHLSELHKVIKTC 343 (711)
Q Consensus 264 G~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~g~~~~TSYDYdApL~E~G~~~tpKy~~lr~l~~~i~~~ 343 (711)
|++++.|++|+++..+++|+++|+|++||||||||||||++||++.+|||||||||+ |..++|||.|+|.+|..++.+
T Consensus 255 Gg~~~~R~~e~ia~~va~fls~ggs~vNyYM~hGGTNFGrt~G~~~atsy~~dap~d--gl~~~pk~ghlk~~hts~d~~ 332 (649)
T KOG0496|consen 255 GGPHPCRPVEDIALSVARFLSKGGSSVNYYMYHGGTNFGRTNGPFIATSYDYDAPLD--GLLRQPKYGHLKPLHTSYDYC 332 (649)
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCccceEEEEeecccCCCcccCcccccccccccccc--hhhcCCCccccccchhhhhhc
Confidence 999999999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred CCCCCCCCCcccCCCCCccceecCCCCCceeEEeecCCCCCceeEEecCceeecCCcceeecCCCccceecceeeeeccc
Q 037832 344 EPTILNSEPTVIPLGPHQEARVFNPPTGGCVAFLSNHDPNLPVNLTFWNLQYELPPWSISVLPDCRTAVYNSAIVTARKT 423 (711)
Q Consensus 344 ~~~l~~~~p~~~~~g~~~~~~~y~~~~~~~~~fl~n~~~~~~~~v~~~~~~~~lp~~sv~il~~~~~v~~~t~~v~~~~~ 423 (711)
++.+.++++...++++ ..+.|.+|+.|++......+.|++..|.+|+|+|+|+|||++++|+|+++.++
T Consensus 333 ep~lv~gd~~~~kyg~---------~~~~C~~Fl~n~~~~~~~~v~f~~~~y~~~~~slsilpdck~~~~nta~~~~~-- 401 (649)
T KOG0496|consen 333 EPALVAGDITTAKYGN---------LREACAAFLSNNNGAPAAPVPFNKPKYRLPPWSLSILPDCKTVVYNTAKVMAQ-- 401 (649)
T ss_pred CccccccCcccccccc---------hhhHHHHHHhcCCCCCCCccccCCCccccCceeEEechhhcchhhhccccccc--
Confidence 9998888766544443 33459999999999889999999999999999999999999999999988543
Q ss_pred cccccccccccccccccccCccCCCCCCcccccccccccCCCCCCcceEEEEEEecCCCCCCcccCCCCCeeeec-ccce
Q 037832 424 EKKMIPFQGALQNWESYSEGTSSSDSSKTFVKYGLTEHLFLTRDTTDYLWYTTEVFIDPSEGFLYNGQDPLLNIM-SAGH 502 (711)
Q Consensus 424 ~~~~~~~~~~~~~w~~~~e~~~~~~~~~~~~~~~~~Eql~~t~d~~GYl~Y~t~v~~~~~~~~~~~g~~~~L~i~-~~~D 502 (711)
|....|++ ++|..++ .+||++|+|.++.+.++. +.|+|. +++|
T Consensus 402 -------------~~~~~e~~-------------~~~~~~~---~~~~ll~~~~~t~d~sd~-------t~~~i~ls~g~ 445 (649)
T KOG0496|consen 402 -------------WISFTEPI-------------PSEAVGQ---SFGGLLEQTNLTKDKSDT-------TSLKIPLSLGH 445 (649)
T ss_pred -------------cccccCCC-------------ccccccC---cceEEEEEEeeccccCCC-------ceEeecccccc
Confidence 55555654 3677665 788999999998766552 568888 9999
Q ss_pred EEEEEECCEEEEEEecccCCCceEEEeeeeecCCccEEEEEEecCCCccccccccccCccccccEEEcCccCCcccCccC
Q 037832 503 GLNVYVNDQLQGLHHGSLETPQVTFSKKVKLRGGVNKISLQSVAVGLPNIGTQFEKWNLGVLGPVTLSGLNEGTRDLAKQ 582 (711)
Q Consensus 503 ~~~VfVng~~vG~~~~~~~~~~~~~~~~~~l~~g~n~L~ILven~Gr~n~G~~~~~~~kGI~g~V~l~g~~~g~~~l~~~ 582 (711)
++||||||+++|+++++.....+.+..++.|+.|.|+|+|||||+||+||| +++.+.|||+|+|+|+|. ++++++
T Consensus 446 ~~hVfvNg~~~G~~~g~~~~~~~~~~~~~~l~~g~n~l~iL~~~~G~~n~G-~~e~~~~Gi~g~v~l~g~----~~l~~~ 520 (649)
T KOG0496|consen 446 ALHVFVNGEFAGSLHGNNEKIKLNLSQPVGLKAGENKLALLSENVGLPNYG-HFENDFKGILGPVYLNGL----IDLTWT 520 (649)
T ss_pred eEEEEECCEEeeeEeccccceeEEeecccccccCcceEEEEEEecCCCCcC-cccccccccccceEEeee----ecccee
Confidence 999999999999999987666788888888999999999999999999999 889999999999999987 578877
Q ss_pred CceEEcCCCCccCCCCCCCCCCCCccccCCCCCCCCCceEEEEEEeCCCCCCceEEecCCCceEEEEEcCcccceecccc
Q 037832 583 NWTYKIGLEGEDLGLPFTGGNSSVQWVQGPTLAKNWPGTWYKTTFDAPEGNDPLALDMRTMSKGLIWVNGHGVGRYWSAS 662 (711)
Q Consensus 583 ~W~~~~~l~ge~~~~~~~~~~~~~~w~~~~~~~~~~~~~~Yk~tF~~p~~~d~~~Ld~~g~gKG~vwVNG~nlGRYW~~~ 662 (711)
.|.|+++|.||.+.+++.++.++++|......+..+|.+||+ +|++|++.+||+|||.|||||+|||||+||||||+++
T Consensus 521 ~w~~~~gl~ge~~~~~~~~~~~~v~w~~~~~~~~k~P~~w~k-~f~~p~g~~~t~Ldm~g~GKG~vwVNG~niGRYW~~~ 599 (649)
T KOG0496|consen 521 KWPYKVGLKGEKLGLHTEEGSSKVKWKKLSNTATKQPLTWYK-TFDIPSGSEPTALDMNGWGKGQVWVNGQNIGRYWPSF 599 (649)
T ss_pred ecceecccccchhhccccccccccceeeccCcccCCCeEEEE-EecCCCCCCCeEEecCCCcceEEEECCcccccccCCC
Confidence 899999999999999999888889998776544447899999 9999999999999999999999999999999999987
Q ss_pred cccCCCCCCCcccCCccCcccccCCCCCCceeeeecCCCCccCCCCeeC
Q 037832 663 IAYGNCSPHPCYYGGFMNNQKCLSGCGKPSQIWYHVPRSWLKPTGNLLV 711 (711)
Q Consensus 663 ~~~g~~G~~~~~~~G~~~~~~~~~~~g~PQqtlYhVP~~~Lk~g~N~lV 711 (711)
| ||+++ |||++|||++.|+||
T Consensus 600 ------G---------------------~Q~~y-hvPr~~Lk~~~N~lv 620 (649)
T KOG0496|consen 600 ------G---------------------PQRTY-HVPRSWLKPSGNLLV 620 (649)
T ss_pred ------C---------------------CceEE-ECcHHHhCcCCceEE
Confidence 7 97665 599999999999986
No 3
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=100.00 E-value=4.9e-89 Score=731.88 Aligned_cols=296 Identities=41% Similarity=0.719 Sum_probs=231.5
Q ss_pred cEEECCEEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeeecchhHHHHHHHHHHcCCEEE
Q 037832 35 GLIINGQRRILFSGSIHYPRSTPEMWPDLLKKAKDGGLDIVDTYVFWNGHEPTRGKFYFEGRYDLVRFIKLAQQAGLYVT 114 (711)
Q Consensus 35 ~~~i~G~p~~~~sg~~hy~r~~~~~W~~~l~~~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~vi 114 (711)
+|+|||||++|+|||+||+|+|+++|+++|+||||+|||||+|||+||+|||+||+|||+|.+||++||++|+|+||+||
T Consensus 1 ~~~~~g~~~~~~~Ge~hy~r~p~~~W~~~l~k~ka~G~n~v~~yv~W~~he~~~g~~df~g~~dl~~f~~~a~~~gl~vi 80 (319)
T PF01301_consen 1 SFLIDGKPFFILSGEFHYFRIPPEYWRDRLQKMKAAGLNTVSTYVPWNLHEPEEGQFDFTGNRDLDRFLDLAQENGLYVI 80 (319)
T ss_dssp CEEETTEEE-EEEEEE-GGGS-GGGHHHHHHHHHHTT-SEEEEE--HHHHSSBTTB---SGGG-HHHHHHHHHHTT-EEE
T ss_pred CeEECCEEEEEEEeeeccccCChhHHHHHHHHHHhCCcceEEEeccccccCCCCCcccccchhhHHHHHHHHHHcCcEEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCcccccccCCCCCCceecccCCcccccCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeecccccccchhcccC
Q 037832 115 LRIGPYACAEWNFGAFPAWLKFIPGMEFRIDNQPFELEMQKWVTKIVDMLKAEKLFETQGGPIILSQIENEFELVEWNLG 194 (711)
Q Consensus 115 lr~GPyicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~ 194 (711)
|||||||||||++||+|.||.+++++++||+|+.|++++++|+++|+++++ ++|+++||||||+|||||||..
T Consensus 81 lrpGpyi~aE~~~gG~P~Wl~~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~--~~~~~~GGpII~vQvENEyg~~----- 153 (319)
T PF01301_consen 81 LRPGPYICAEWDNGGLPAWLLRKPDIRLRTNDPPFLEAVERWYRALAKIIK--PLQYTNGGPIIMVQVENEYGSY----- 153 (319)
T ss_dssp EEEES---TTBGGGG--GGGGGSTTS-SSSS-HHHHHHHHHHHHHHHHHHG--GGBGGGTSSEEEEEESSSGGCT-----
T ss_pred ecccceecccccchhhhhhhhccccccccccchhHHHHHHHHHHHHHHHHH--hhhhcCCCceehhhhhhhhCCC-----
Confidence 999999999999999999999999999999999999999999999999999 8899999999999999999953
Q ss_pred cchHHHHHHHHHHHHhcCCc-cceEecCCCC--------CCcccccCCCCCccCC--------CCCCCCCCCcccccccc
Q 037832 195 DRARVYGQWAAHMAIGLNIT-VPWIMCKQAN--------APDPIIDTCNDFYCDW--------FSPNKDYKPKMWTENWT 257 (711)
Q Consensus 195 ~~~~~y~~~l~~~~~~~g~~-vp~~~~~~~~--------~~~~~~~~~~~~~~~~--------~~~~~p~~P~~~~E~~~ 257 (711)
.++++|++.|++++++.+++ ++.++++... +++..+.+++++.|.. ..+.+|++|+|++|||+
T Consensus 154 ~~~~~Y~~~l~~~~~~~g~~~~~~~t~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~p~~P~~~~E~~~ 233 (319)
T PF01301_consen 154 GTDRAYMEALKDAYRDWGIDPVLLYTTDGPWGSWLPDGGLPGADIYATDNFPPGDNPDEYFGDQRSFQPNQPLMCTEFWG 233 (319)
T ss_dssp SS-HHHHHHHHHHHHHTT-SSSBEEEEESSSHCCHCCC-TTTGSCEEEEEETTTSSHHHHHHHHHHHHTTS--EEEEEES
T ss_pred cccHhHHHHHHHHHHHhhCccceeeccCCCcccccccCCCCcceEEeccccCCCchHHHHHhhhhhcCCCCCeEEEEecc
Confidence 37899999999999999998 5677776521 2332233344444421 12457899999999999
Q ss_pred ccccccCCCCCcCCHHHHHHHHHHHHHhCCcceeeeEeeccCCCCCCCCCCcc-----ccccCCCCCCCCCCCCCchHHH
Q 037832 258 AWVQQFGTPPLYRPHEDLAYSVLKFIQTGGSMNNYYMYHGGTNFDRTNGAFVA-----TSYDYDGVIDEYGLPSEPKWGH 332 (711)
Q Consensus 258 Gwf~~wG~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~g~~~~-----TSYDYdApL~E~G~~~tpKy~~ 332 (711)
|||++||++++.+++++++..+++++++|.+ +||||||||||||+++|+... |||||||||+|+|++ ||||.+
T Consensus 234 Gwf~~WG~~~~~~~~~~~~~~l~~~l~~g~~-~nyYM~hGGTNfG~~~ga~~~~~p~~TSYDY~ApI~E~G~~-~~Ky~~ 311 (319)
T PF01301_consen 234 GWFDHWGGPHYTRPAEDVAADLARMLSKGNS-LNYYMFHGGTNFGFWAGANYYGQPDITSYDYDAPIDEYGQL-TPKYYE 311 (319)
T ss_dssp S---BTTS--HHHHHHHHHHHHHHHHHHCSE-EEEEECE--B--TT-B-EETTTEEB-SB--TT-SB-TTS-B--HHHHH
T ss_pred ccccccCCCCccCCHHHHHHHHHHHHHhhcc-cceeeccccCCccccccCCCCCCCCcccCCcCCccCcCCCc-CHHHHH
Confidence 9999999999999999999999999999966 799999999999999987655 999999999999999 699999
Q ss_pred HHHHHHH
Q 037832 333 LSELHKV 339 (711)
Q Consensus 333 lr~l~~~ 339 (711)
||+||.+
T Consensus 312 lr~l~~~ 318 (319)
T PF01301_consen 312 LRRLHQK 318 (319)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9999975
No 4
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.6e-38 Score=358.10 Aligned_cols=288 Identities=26% Similarity=0.314 Sum_probs=217.8
Q ss_pred EEEcCCcEEECCEEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEE-cccCCCCCCCCceeeeecchhHHHHHHHHH
Q 037832 29 VTYDRKGLIINGQRRILFSGSIHYPRSTPEMWPDLLKKAKDGGLDIVDT-YVFWNGHEPTRGKFYFEGRYDLVRFIKLAQ 107 (711)
Q Consensus 29 v~~d~~~~~i~G~p~~~~sg~~hy~r~~~~~W~~~l~~~ka~G~N~V~~-yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~ 107 (711)
|.+++..+++||+|++++||++||+|+|++.|.+||++||++|+|+|++ |+.||.|||++|+|||+ .+|+. ||++|+
T Consensus 1 ~~~~~~~~~~dg~~~~l~gG~y~p~~~p~~~w~ddl~~mk~~G~N~V~ig~faW~~~eP~eG~fdf~-~~D~~-~l~~a~ 78 (673)
T COG1874 1 VSYDGYSFIRDGRRILLYGGDYYPERWPRETWMDDLRKMKALGLNTVRIGYFAWNLHEPEEGKFDFT-WLDEI-FLERAY 78 (673)
T ss_pred CcccccceeeCCceeEEeccccChHHCCHHHHHHHHHHHHHhCCCeeEeeeEEeeccCccccccCcc-cchHH-HHHHHH
Confidence 3567889999999999999999999999999999999999999999999 99999999999999999 77887 899999
Q ss_pred HcCCEEEeecCc-ccccccCCCCCCceecccCCcccc---------cCChhHHHHHHHHHHHHHHHHHhcccccccCCce
Q 037832 108 QAGLYVTLRIGP-YACAEWNFGAFPAWLKFIPGMEFR---------IDNQPFELEMQKWVTKIVDMLKAEKLFETQGGPI 177 (711)
Q Consensus 108 ~~gL~vilr~GP-yicaEw~~GG~P~WL~~~p~~~~R---------~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpI 177 (711)
+.||+||||||| ..|.+|..+++|.||..++....| .+++-|++++++.+++|.+++ +.+|++|
T Consensus 79 ~~Gl~vil~t~P~g~~P~Wl~~~~PeiL~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~------~~~~~~v 152 (673)
T COG1874 79 KAGLYVILRTGPTGAPPAWLAKKYPEILAVDENGRVRSDGARENICPVSPVYREYLDRILQQIRERL------YGNGPAV 152 (673)
T ss_pred hcCceEEEecCCCCCCchHHhcCChhheEecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHH------hccCCce
Confidence 999999999999 999999999999999987664433 356678888877555555443 4789999
Q ss_pred EeecccccccchhcccCcchHHHHHHHHHHHHhc-CCccceEecC-CCCCC-cccccCCC-CCc----c--CCCCCCCCC
Q 037832 178 ILSQIENEFELVEWNLGDRARVYGQWAAHMAIGL-NITVPWIMCK-QANAP-DPIIDTCN-DFY----C--DWFSPNKDY 247 (711)
Q Consensus 178 I~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~-g~~vp~~~~~-~~~~~-~~~~~~~~-~~~----~--~~~~~~~p~ 247 (711)
|+|||+||||++.+.+..|.+.+..||++.+-.+ ...-+|=+.- ..+.. -..|.+.+ ... . -++......
T Consensus 153 ~~w~~dneY~~~~~~~~~~~~~f~~wLk~~yg~l~~ln~~w~t~~ws~t~~~~~~i~~p~~~~e~~~~~~~ld~~~f~~e 232 (673)
T COG1874 153 ITWQNDNEYGGHPCYCDYCQAAFRLWLKKGYGSLDNLNEAWGTSFWSHTYKDFDEIMSPNPFGELPLPGLYLDYRRFESE 232 (673)
T ss_pred eEEEccCccCCccccccccHHHHHHHHHhCcchHHhhhhhhhhhhcccccccHHhhcCCCCccccCCccchhhHhhhhhh
Confidence 9999999999966666678899999999887321 1122331111 10000 01111111 000 0 022222233
Q ss_pred C----Cccccccccccc-cccCCCCCcCC-HHHHHHHHHHHHHhCCcceeeeEeeccCCCC------CCCCCC-------
Q 037832 248 K----PKMWTENWTAWV-QQFGTPPLYRP-HEDLAYSVLKFIQTGGSMNNYYMYHGGTNFD------RTNGAF------- 308 (711)
Q Consensus 248 ~----P~~~~E~~~Gwf-~~wG~~~~~~~-~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG------~~~g~~------- 308 (711)
+ +....|.+-+|| +.|..+.-... .+.-++.+++.|....+ -||||||+|++|+ +.+|..
T Consensus 233 ~~~~~~~~~~~~~~~~~P~~pvt~nl~~~~~~~~~~~~~~~ld~~sw-dny~~~~~~~~~~~~~h~l~r~~~~~~~~~~m 311 (673)
T COG1874 233 QILEFVREEGEAIKAYFPNRPVTPNLLAAFKKFDAYKWEKVLDFASW-DNYPAWHRGRDFTKFIHDLFRNGKQGQPFWLM 311 (673)
T ss_pred hhHHHHHHHHHHHHHhCCCCCCChhHhhhhhhcchHHHHHhcChhhh-hhhhhhccccchhhhhHHHHHhhccCCceeec
Confidence 3 667788888999 77776655444 34446667777777766 6999999999999 665431
Q ss_pred ----ccccccCCCCCCCCCCC
Q 037832 309 ----VATSYDYDGVIDEYGLP 325 (711)
Q Consensus 309 ----~~TSYDYdApL~E~G~~ 325 (711)
..|+|++++.+.+.|..
T Consensus 312 e~~P~~vn~~~~n~~~~~G~~ 332 (673)
T COG1874 312 EQLPSVVNWALYNKLKRPGAL 332 (673)
T ss_pred cCCcchhhhhhccCCCCCccc
Confidence 58999999999999984
No 5
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.84 E-value=5.5e-21 Score=210.54 Aligned_cols=263 Identities=19% Similarity=0.254 Sum_probs=160.1
Q ss_pred eeCCCCCcccHHHHHHHHHHCCCCEEEE-cccCCCCCCCCceeeeecchhHHHHHHHHHHcCCEEEeecCcccccccCCC
Q 037832 50 IHYPRSTPEMWPDLLKKAKDGGLDIVDT-YVFWNGHEPTRGKFYFEGRYDLVRFIKLAQQAGLYVTLRIGPYACAEWNFG 128 (711)
Q Consensus 50 ~hy~r~~~~~W~~~l~~~ka~G~N~V~~-yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~vilr~GPyicaEw~~G 128 (711)
+++..++++.|++++++||++|+|+|++ .+.|+..||+||+|||+ .|+++|++|+++||+|||+.. .+
T Consensus 2 y~pe~~~~e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~---~lD~~l~~a~~~Gi~viL~~~--------~~ 70 (374)
T PF02449_consen 2 YYPEQWPEEEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFS---WLDRVLDLAAKHGIKVILGTP--------TA 70 (374)
T ss_dssp --GGGS-CCHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---H---HHHHHHHHHHCTT-EEEEEEC--------TT
T ss_pred CCcccCCHHHHHHHHHHHHHcCCCEEEEEEechhhccCCCCeeecH---HHHHHHHHHHhccCeEEEEec--------cc
Confidence 4667789999999999999999999996 67899999999999999 899999999999999999974 56
Q ss_pred CCCceecc-cCCccc----------------ccCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeecccccccchhc
Q 037832 129 AFPAWLKF-IPGMEF----------------RIDNQPFELEMQKWVTKIVDMLKAEKLFETQGGPIILSQIENEFELVEW 191 (711)
Q Consensus 129 G~P~WL~~-~p~~~~----------------R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~ 191 (711)
..|.||.+ +|++.. ..++|.|++++++++++|+++++++ ..||+|||+||++...+
T Consensus 71 ~~P~Wl~~~~Pe~~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~-------p~vi~~~i~NE~~~~~~ 143 (374)
T PF02449_consen 71 APPAWLYDKYPEILPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDH-------PAVIGWQIDNEPGYHRC 143 (374)
T ss_dssp TS-HHHHCCSGCCC-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTT-------TTEEEEEECCSTTCTS-
T ss_pred ccccchhhhcccccccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhcccc-------ceEEEEEeccccCcCcC
Confidence 78999974 566532 1357899999999999999988854 47999999999987422
Q ss_pred ccCcchHHHHHHHHHHHHhc-------C-------------CccceEecCCC----------------------------
Q 037832 192 NLGDRARVYGQWAAHMAIGL-------N-------------ITVPWIMCKQA---------------------------- 223 (711)
Q Consensus 192 ~~~~~~~~y~~~l~~~~~~~-------g-------------~~vp~~~~~~~---------------------------- 223 (711)
.+..+.++|.+||++++... | +..|..+....
T Consensus 144 ~~~~~~~~f~~wLk~kY~ti~~LN~aWgt~~ws~~~~~f~~v~~P~~~~~~~~~~~~~D~~rF~~~~~~~~~~~~~~~ir 223 (374)
T PF02449_consen 144 YSPACQAAFRQWLKEKYGTIEALNRAWGTAFWSQRYSSFDEVPPPRPTSSPENPAQWLDWYRFQSDRVAEFFRWQADIIR 223 (374)
T ss_dssp -SHHHHHHHHHHHHHHHSSHHHHHHHHTTTGGG---SSGGG---S-S-SS---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHhCCHHHHHHHHcCCcccCccCcHHhcCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22346778999999988521 1 11122211000
Q ss_pred -CCCcccccCCC--C-----C-------ccC-----CC----------------------CCCCCCCCcccccccccccc
Q 037832 224 -NAPDPIIDTCN--D-----F-------YCD-----WF----------------------SPNKDYKPKMWTENWTAWVQ 261 (711)
Q Consensus 224 -~~~~~~~~~~~--~-----~-------~~~-----~~----------------------~~~~p~~P~~~~E~~~Gwf~ 261 (711)
..|+ ..-+.| + . .+| .+ +...+++|.+++|..+| -.
T Consensus 224 ~~~p~-~~vt~n~~~~~~~~~d~~~~a~~~D~~~~d~Y~~~~~~~~~~~~~~~a~~~dl~R~~~~~kpf~v~E~~~g-~~ 301 (374)
T PF02449_consen 224 EYDPD-HPVTTNFMGSWFNGIDYFKWAKYLDVVSWDSYPDGSFDFYDDDPYSLAFNHDLMRSLAKGKPFWVMEQQPG-PV 301 (374)
T ss_dssp HHSTT--EEE-EE-TT---SS-HHHHGGGSSSEEEEE-HHHHHTTTT--TTHHHHHHHHHHHHTTT--EEEEEE--S---
T ss_pred HhCCC-ceEEeCccccccCcCCHHHHHhhCCcceeccccCcccCCCCCCHHHHHHHHHHHHhhcCCCceEeecCCCC-CC
Confidence 0010 000101 0 0 000 00 01147899999999999 56
Q ss_pred ccCCCCCcCCHHHHHHHHHHHHHhCCcceeeeEeeccCCCCCCCCCCccccccCCCCCCCCC-CCCCchHHHHHHHHHHH
Q 037832 262 QFGTPPLYRPHEDLAYSVLKFIQTGGSMNNYYMYHGGTNFDRTNGAFVATSYDYDGVIDEYG-LPSEPKWGHLSELHKVI 340 (711)
Q Consensus 262 ~wG~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~g~~~~TSYDYdApL~E~G-~~~tpKy~~lr~l~~~i 340 (711)
.|+.......+..+....-.-++.|+..+.|+-+ ..--+|.-.. ..+.|+-+| .+ +++|.+++++.+.|
T Consensus 302 ~~~~~~~~~~pg~~~~~~~~~~A~Ga~~i~~~~w-r~~~~g~E~~--------~~g~~~~dg~~~-~~~~~e~~~~~~~l 371 (374)
T PF02449_consen 302 NWRPYNRPPRPGELRLWSWQAIAHGADGILFWQW-RQSRFGAEQF--------HGGLVDHDGREP-TRRYREVAQLGREL 371 (374)
T ss_dssp SSSSS-----TTHHHHHHHHHHHTT-S-EEEC-S-B--SSSTTTT--------S--SB-TTS--B--HHHHHHHHHHHHH
T ss_pred CCccCCCCCCCCHHHHHHHHHHHHhCCeeEeeec-cCCCCCchhh--------hcccCCccCCCC-CcHHHHHHHHHHHH
Confidence 6766555555666665565678999998877655 3333342211 136788889 66 79999999998877
Q ss_pred hh
Q 037832 341 KT 342 (711)
Q Consensus 341 ~~ 342 (711)
+.
T Consensus 372 ~~ 373 (374)
T PF02449_consen 372 KK 373 (374)
T ss_dssp HT
T ss_pred hc
Confidence 63
No 6
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=99.52 E-value=4.5e-13 Score=143.31 Aligned_cols=192 Identities=20% Similarity=0.223 Sum_probs=123.5
Q ss_pred EEEcCCcEEECCEEeEEEEEEeeCCC------CCcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeeecchhHHHH
Q 037832 29 VTYDRKGLIINGQRRILFSGSIHYPR------STPEMWPDLLKKAKDGGLDIVDTYVFWNGHEPTRGKFYFEGRYDLVRF 102 (711)
Q Consensus 29 v~~d~~~~~i~G~p~~~~sg~~hy~r------~~~~~W~~~l~~~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~f 102 (711)
|.+.++.|+|||||++|.|.+.|... .+++.|+++|++||+||+|+||+ .+..+.| +|
T Consensus 1 vev~~~~~~lNGk~~~l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~----~h~p~~~------------~~ 64 (298)
T PF02836_consen 1 VEVKDGGFYLNGKPIFLRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRT----HHYPPSP------------RF 64 (298)
T ss_dssp EEEETTEEEETTEEE-EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEE----TTS--SH------------HH
T ss_pred CEEECCEEEECCEEEEEEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEc----ccccCcH------------HH
Confidence 57889999999999999999999633 47899999999999999999999 3333344 89
Q ss_pred HHHHHHcCCEEEeecCcccccccCCCCCCceecccCCcccccCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeecc
Q 037832 103 IKLAQQAGLYVTLRIGPYACAEWNFGAFPAWLKFIPGMEFRIDNQPFELEMQKWVTKIVDMLKAEKLFETQGGPIILSQI 182 (711)
Q Consensus 103 l~~a~~~gL~vilr~GPyicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Qi 182 (711)
+++|.++||.|+..+.=.-++.|..-|. ......|+.+.+.+.+-+++++.+.++ +++||||-+
T Consensus 65 ~~~cD~~GilV~~e~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~v~~~~N-------HPSIi~W~~ 128 (298)
T PF02836_consen 65 YDLCDELGILVWQEIPLEGHGSWQDFGN---------CNYDADDPEFRENAEQELREMVRRDRN-------HPSIIMWSL 128 (298)
T ss_dssp HHHHHHHT-EEEEE-S-BSCTSSSSTSC---------TSCTTTSGGHHHHHHHHHHHHHHHHTT--------TTEEEEEE
T ss_pred HHHHhhcCCEEEEeccccccCccccCCc---------cccCCCCHHHHHHHHHHHHHHHHcCcC-------cCchheeec
Confidence 9999999999998762111223322111 123457888888877777777766664 559999999
Q ss_pred cccccchhcccCcchHHHHHHHHHHHHhcCCccceEecCCCC--CCcccc-cCCCCCcc-----CCCC----C--CCCCC
Q 037832 183 ENEFELVEWNLGDRARVYGQWAAHMAIGLNITVPWIMCKQAN--APDPII-DTCNDFYC-----DWFS----P--NKDYK 248 (711)
Q Consensus 183 ENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~~~~~--~~~~~~-~~~~~~~~-----~~~~----~--~~p~~ 248 (711)
.||-. ...+++.|.+++++.+.+.|+....+.. ..+... +...+.+. +.+. . ..+++
T Consensus 129 gNE~~---------~~~~~~~l~~~~k~~DptRpv~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~k 199 (298)
T PF02836_consen 129 GNESD---------YREFLKELYDLVKKLDPTRPVTYASNGWDPYVDDIIFDIYSGWYNGYGDPEDFEKYLEDWYKYPDK 199 (298)
T ss_dssp EESSH---------HHHHHHHHHHHHHHH-TTSEEEEETGTSGGSTSSCEECSETTTSSSCCHHHHHHHHHHHHHHHCTS
T ss_pred CccCc---------cccchhHHHHHHHhcCCCCceeecccccccccccccccccccccCCcccHHHHHHHHHhccccCCC
Confidence 99992 2467888999999999999875443310 111111 11111110 0111 1 35889
Q ss_pred Ccccccccccccc
Q 037832 249 PKMWTENWTAWVQ 261 (711)
Q Consensus 249 P~~~~E~~~Gwf~ 261 (711)
|++.+||....+.
T Consensus 200 P~i~sEyg~~~~~ 212 (298)
T PF02836_consen 200 PIIISEYGADAYN 212 (298)
T ss_dssp -EEEEEESEBBSS
T ss_pred CeEehhccccccc
Confidence 9999999765544
No 7
>PRK10150 beta-D-glucuronidase; Provisional
Probab=99.40 E-value=2.8e-11 Score=141.71 Aligned_cols=159 Identities=15% Similarity=0.044 Sum_probs=111.0
Q ss_pred eEEEEcCCcEEECCEEeEEEEEEeeCCC------CCcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeeecchhHH
Q 037832 27 STVTYDRKGLIINGQRRILFSGSIHYPR------STPEMWPDLLKKAKDGGLDIVDTYVFWNGHEPTRGKFYFEGRYDLV 100 (711)
Q Consensus 27 ~~v~~d~~~~~i~G~p~~~~sg~~hy~r------~~~~~W~~~l~~~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~ 100 (711)
++|+++++.|+|||+|+++.|.+.|... ++++.|+++++.||++|+|+||+ .+..+.|
T Consensus 276 R~i~~~~~~f~lNG~pv~lrG~~~h~~~~~~G~a~~~~~~~~d~~l~K~~G~N~vR~----sh~p~~~------------ 339 (604)
T PRK10150 276 RSVAVKGGQFLINGKPFYFKGFGKHEDADIRGKGLDEVLNVHDHNLMKWIGANSFRT----SHYPYSE------------ 339 (604)
T ss_pred EEEEEeCCEEEECCEEEEEEeeeccCCCCccCCcCCHHHHHHHHHHHHHCCCCEEEe----ccCCCCH------------
Confidence 6788999999999999999999998532 47788999999999999999999 3333234
Q ss_pred HHHHHHHHcCCEEEeecCcccccccCCCCCCceec-------c-cCCcccccCChhHHHHHHHHHHHHHHHHHhcccccc
Q 037832 101 RFIKLAQQAGLYVTLRIGPYACAEWNFGAFPAWLK-------F-IPGMEFRIDNQPFELEMQKWVTKIVDMLKAEKLFET 172 (711)
Q Consensus 101 ~fl~~a~~~gL~vilr~GPyicaEw~~GG~P~WL~-------~-~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~ 172 (711)
+|+++|.++||+|+.... . + |+..|.. . .+.-..-..+|.+.++..+- +.++|++ ..
T Consensus 340 ~~~~~cD~~GllV~~E~p-~-~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~mv~r----~~ 404 (604)
T PRK10150 340 EMLDLADRHGIVVIDETP-A-V------GLNLSFGAGLEAGNKPKETYSEEAVNGETQQAHLQA---IRELIAR----DK 404 (604)
T ss_pred HHHHHHHhcCcEEEEecc-c-c------cccccccccccccccccccccccccchhHHHHHHHH---HHHHHHh----cc
Confidence 899999999999998853 1 1 1111211 0 11100112345555544433 4444542 35
Q ss_pred cCCceEeecccccccchhcccCcchHHHHHHHHHHHHhcCCccceEec
Q 037832 173 QGGPIILSQIENEFELVEWNLGDRARVYGQWAAHMAIGLNITVPWIMC 220 (711)
Q Consensus 173 ~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~ 220 (711)
|+.+||||-|.||.... ......+++.|.+.+|+++.+.|+..+
T Consensus 405 NHPSIi~Ws~gNE~~~~----~~~~~~~~~~l~~~~k~~DptR~vt~~ 448 (604)
T PRK10150 405 NHPSVVMWSIANEPASR----EQGAREYFAPLAELTRKLDPTRPVTCV 448 (604)
T ss_pred CCceEEEEeeccCCCcc----chhHHHHHHHHHHHHHhhCCCCceEEE
Confidence 77799999999997542 113457888999999999999987554
No 8
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=99.27 E-value=5.4e-11 Score=146.02 Aligned_cols=260 Identities=19% Similarity=0.177 Sum_probs=154.9
Q ss_pred eEEEEcCCcEEECCEEeEEEEEEeeCCC------CCcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeeecchhHH
Q 037832 27 STVTYDRKGLIINGQRRILFSGSIHYPR------STPEMWPDLLKKAKDGGLDIVDTYVFWNGHEPTRGKFYFEGRYDLV 100 (711)
Q Consensus 27 ~~v~~d~~~~~i~G~p~~~~sg~~hy~r------~~~~~W~~~l~~~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~ 100 (711)
++|+++++.|+|||+|+++.|.+.|... ++++.|+++|+.||++|+|+||+ .+..+.|
T Consensus 318 R~iei~~~~f~lNGkpi~lrGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~----sHyP~~~------------ 381 (1021)
T PRK10340 318 RDIKVRDGLFWINNRYVKLHGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRT----AHYPNDP------------ 381 (1021)
T ss_pred EEEEEECCEEEECCEEEEEEEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEe----cCCCCCH------------
Confidence 6788889999999999999999998432 47889999999999999999999 4444455
Q ss_pred HHHHHHHHcCCEEEeecCcccccccCCCCCCceecccCCcccccCChhHHHHHHHHHHHHHHHHHhcccccccCCceEee
Q 037832 101 RFIKLAQQAGLYVTLRIGPYACAEWNFGAFPAWLKFIPGMEFRIDNQPFELEMQKWVTKIVDMLKAEKLFETQGGPIILS 180 (711)
Q Consensus 101 ~fl~~a~~~gL~vilr~GPyicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~ 180 (711)
+|+++|.|+||+|+... |..|..|...+ +...-+++|.+.++. .+++.+++++ .+|+.+||||
T Consensus 382 ~fydlcDe~GllV~dE~-~~e~~g~~~~~---------~~~~~~~~p~~~~~~---~~~~~~mV~R----drNHPSIi~W 444 (1021)
T PRK10340 382 RFYELCDIYGLFVMAET-DVESHGFANVG---------DISRITDDPQWEKVY---VDRIVRHIHA----QKNHPSIIIW 444 (1021)
T ss_pred HHHHHHHHCCCEEEECC-cccccCccccc---------ccccccCCHHHHHHH---HHHHHHHHHh----CCCCCEEEEE
Confidence 89999999999999886 33332222111 000113566665433 3444555552 3577899999
Q ss_pred cccccccchhcccCcchHHHHHHHHHHHHhcCCccceEecCCCCCC--cccccCCCCCc--cCCCCCCCCCCCccccccc
Q 037832 181 QIENEFELVEWNLGDRARVYGQWAAHMAIGLNITVPWIMCKQANAP--DPIIDTCNDFY--CDWFSPNKDYKPKMWTENW 256 (711)
Q Consensus 181 QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~p~~P~~~~E~~ 256 (711)
-+.||-+. + . .++.+.+.+|+++.+.|+. +.+.... .+++...-... +..+....+++|++.+|+-
T Consensus 445 slGNE~~~-----g---~-~~~~~~~~~k~~DptR~v~-~~~~~~~~~~Dv~~~~Y~~~~~~~~~~~~~~~kP~i~~Ey~ 514 (1021)
T PRK10340 445 SLGNESGY-----G---C-NIRAMYHAAKALDDTRLVH-YEEDRDAEVVDVISTMYTRVELMNEFGEYPHPKPRILCEYA 514 (1021)
T ss_pred ECccCccc-----c---H-HHHHHHHHHHHhCCCceEE-eCCCcCccccceeccccCCHHHHHHHHhCCCCCcEEEEchH
Confidence 99999763 2 1 2467788888889888763 3321111 12222111111 1122234467999999984
Q ss_pred cccccccCCCCCcCCHHHHHHHHHHH--HHhCCcc-----e---------eeeEeeccCCCCCCCCCCccccccCCCCCC
Q 037832 257 TAWVQQFGTPPLYRPHEDLAYSVLKF--IQTGGSM-----N---------NYYMYHGGTNFDRTNGAFVATSYDYDGVID 320 (711)
Q Consensus 257 ~Gwf~~wG~~~~~~~~~~~~~~~~~~--l~~g~s~-----~---------n~YM~hGGTNfG~~~g~~~~TSYDYdApL~ 320 (711)
-+ .|... ...++.-..+.+. + .|+-+ + .-|+.+||- ||-+. . ..++--+.-++
T Consensus 515 ha----mgn~~--g~~~~yw~~~~~~p~l-~GgfiW~~~D~~~~~~~~~G~~~~~ygGd-~g~~p--~-~~~f~~~Glv~ 583 (1021)
T PRK10340 515 HA----MGNGP--GGLTEYQNVFYKHDCI-QGHYVWEWCDHGIQAQDDNGNVWYKYGGD-YGDYP--N-NYNFCIDGLIY 583 (1021)
T ss_pred hc----cCCCC--CCHHHHHHHHHhCCce-eEEeeeecCcccccccCCCCCEEEEECCC-CCCCC--C-CcCcccceeEC
Confidence 21 12100 1123332222210 0 01100 0 123445542 44221 1 12233347788
Q ss_pred CCCCCCCchHHHHHHHHHHHh
Q 037832 321 EYGLPSEPKWGHLSELHKVIK 341 (711)
Q Consensus 321 E~G~~~tpKy~~lr~l~~~i~ 341 (711)
-++.+ .|.+.+.|.+.+-++
T Consensus 584 ~dr~p-~p~~~e~k~~~~pv~ 603 (1021)
T PRK10340 584 PDQTP-GPGLKEYKQVIAPVK 603 (1021)
T ss_pred CCCCC-ChhHHHHHHhcceEE
Confidence 89998 699999998865443
No 9
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=99.22 E-value=1.6e-10 Score=141.77 Aligned_cols=149 Identities=15% Similarity=0.097 Sum_probs=109.2
Q ss_pred eEEEEcCCcEEECCEEeEEEEEEeeCC------CCCcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeeecchhHH
Q 037832 27 STVTYDRKGLIINGQRRILFSGSIHYP------RSTPEMWPDLLKKAKDGGLDIVDTYVFWNGHEPTRGKFYFEGRYDLV 100 (711)
Q Consensus 27 ~~v~~d~~~~~i~G~p~~~~sg~~hy~------r~~~~~W~~~l~~~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~ 100 (711)
++|+++++.|+|||+|+++.|...|.. +++++.++++|+.||++|+|+||+ .++.+.|
T Consensus 334 R~iei~~~~f~LNGkpi~lrGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~----sHyP~~p------------ 397 (1027)
T PRK09525 334 RKVEIENGLLKLNGKPLLIRGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRC----SHYPNHP------------ 397 (1027)
T ss_pred EEEEEECCEEEECCEEEEEEEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEe----cCCCCCH------------
Confidence 567888899999999999999999842 358899999999999999999999 4555555
Q ss_pred HHHHHHHHcCCEEEeecCcccccccCCCCCCceecccCCcccccCChhHHHHHHHHHHHHHHHHHhcccccccCCceEee
Q 037832 101 RFIKLAQQAGLYVTLRIGPYACAEWNFGAFPAWLKFIPGMEFRIDNQPFELEMQKWVTKIVDMLKAEKLFETQGGPIILS 180 (711)
Q Consensus 101 ~fl~~a~~~gL~vilr~GPyicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~ 180 (711)
+|+++|.|+||+|+-...-..|+-+ |.. . -.+||.|.+++ .+++.+++++ .+|+.+||||
T Consensus 398 ~fydlcDe~GilV~dE~~~e~hg~~-----~~~---~-----~~~dp~~~~~~---~~~~~~mV~R----drNHPSIi~W 457 (1027)
T PRK09525 398 LWYELCDRYGLYVVDEANIETHGMV-----PMN---R-----LSDDPRWLPAM---SERVTRMVQR----DRNHPSIIIW 457 (1027)
T ss_pred HHHHHHHHcCCEEEEecCccccCCc-----ccc---C-----CCCCHHHHHHH---HHHHHHHHHh----CCCCCEEEEE
Confidence 8999999999999988631111111 110 0 13567776654 4445555553 3577899999
Q ss_pred cccccccchhcccCcchHHHHHHHHHHHHhcCCccceEec
Q 037832 181 QIENEFELVEWNLGDRARVYGQWAAHMAIGLNITVPWIMC 220 (711)
Q Consensus 181 QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~ 220 (711)
-+.||-+. +. ..+.+.+.+|+++.+.|+...
T Consensus 458 SlgNE~~~-----g~----~~~~l~~~~k~~DptRpV~y~ 488 (1027)
T PRK09525 458 SLGNESGH-----GA----NHDALYRWIKSNDPSRPVQYE 488 (1027)
T ss_pred eCccCCCc-----Ch----hHHHHHHHHHhhCCCCcEEEC
Confidence 99999763 21 245677788888888887554
No 10
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=99.08 E-value=1.8e-09 Score=128.33 Aligned_cols=120 Identities=24% Similarity=0.280 Sum_probs=94.6
Q ss_pred eEEEEcCCcEEECCEEeEEEEEEeeCCC-----C-CcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeeecchhHH
Q 037832 27 STVTYDRKGLIINGQRRILFSGSIHYPR-----S-TPEMWPDLLKKAKDGGLDIVDTYVFWNGHEPTRGKFYFEGRYDLV 100 (711)
Q Consensus 27 ~~v~~d~~~~~i~G~p~~~~sg~~hy~r-----~-~~~~W~~~l~~~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~ 100 (711)
++|+++...|+|||||+++-|...|.+- . ..+.-+++|++||++|+|+||| + |=|.. .
T Consensus 284 R~iei~~~~~~iNGkpvf~kGvnrHe~~~~~G~~~~~~~~~~dl~lmk~~n~N~vRt----s-HyP~~-----------~ 347 (808)
T COG3250 284 RTVEIKDGLLLINGKPVFIRGVNRHEDDPILGRVTDEDAMERDLKLMKEANMNSVRT----S-HYPNS-----------E 347 (808)
T ss_pred EEEEEECCeEEECCeEEEEeeeecccCCCccccccCHHHHHHHHHHHHHcCCCEEEe----c-CCCCC-----------H
Confidence 6889999999999999999999999743 3 4444899999999999999999 3 55543 3
Q ss_pred HHHHHHHHcCCEEEeecCcccccccCCCCCCceecccCCcccccCChhHHHHHHHHHHHHHHHHHhcccccccCCceEee
Q 037832 101 RFIKLAQQAGLYVTLRIGPYACAEWNFGAFPAWLKFIPGMEFRIDNQPFELEMQKWVTKIVDMLKAEKLFETQGGPIILS 180 (711)
Q Consensus 101 ~fl~~a~~~gL~vilr~GPyicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~ 180 (711)
+|+++|.++||+||..+ ..||.. +| +|+.|++.+..=+++++++.+ |+.+||||
T Consensus 348 ~~ydLcDelGllV~~Ea----~~~~~~--~~-------------~~~~~~k~~~~~i~~mver~k-------nHPSIiiW 401 (808)
T COG3250 348 EFYDLCDELGLLVIDEA----MIETHG--MP-------------DDPEWRKEVSEEVRRMVERDR-------NHPSIIIW 401 (808)
T ss_pred HHHHHHHHhCcEEEEec----chhhcC--CC-------------CCcchhHHHHHHHHHHHHhcc-------CCCcEEEE
Confidence 89999999999999986 233322 22 677888777665566555555 55699999
Q ss_pred cccccccc
Q 037832 181 QIENEFEL 188 (711)
Q Consensus 181 QiENEyg~ 188 (711)
-+.||-|.
T Consensus 402 s~gNE~~~ 409 (808)
T COG3250 402 SLGNESGH 409 (808)
T ss_pred eccccccC
Confidence 99999874
No 11
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=98.91 E-value=1.5e-08 Score=106.11 Aligned_cols=161 Identities=19% Similarity=0.160 Sum_probs=111.1
Q ss_pred CCEEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEcccCCCC-CCCCce-eeeecchhHHHHHHHHHHcCCEEEee
Q 037832 39 NGQRRILFSGSIHYPRSTPEMWPDLLKKAKDGGLDIVDTYVFWNGH-EPTRGK-FYFEGRYDLVRFIKLAQQAGLYVTLR 116 (711)
Q Consensus 39 ~G~p~~~~sg~~hy~r~~~~~W~~~l~~~ka~G~N~V~~yv~Wn~h-Ep~~G~-~df~g~~dl~~fl~~a~~~gL~vilr 116 (711)
+|+++...+-+.|... +..-++.+++||++|+|+||+.|.|... +|.++. ++=+....|+++|+.|+++||+|||.
T Consensus 4 ~G~~v~~~G~n~~w~~--~~~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild 81 (281)
T PF00150_consen 4 NGKPVNWRGFNTHWYN--PSITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILD 81 (281)
T ss_dssp TSEBEEEEEEEETTSG--GGSHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEE
T ss_pred CCCeEEeeeeecccCC--CCCHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 7999999999999322 2277899999999999999999999554 477764 77677789999999999999999987
Q ss_pred cCcccccccCCCCCCceecccCCcccccCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeecccccccchhccc---
Q 037832 117 IGPYACAEWNFGAFPAWLKFIPGMEFRIDNQPFELEMQKWVTKIVDMLKAEKLFETQGGPIILSQIENEFELVEWNL--- 193 (711)
Q Consensus 117 ~GPyicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~--- 193 (711)
+= + .|.|...... -...+...+...++++.|+.++++ ..+|++++|=||........
T Consensus 82 ~h----~------~~~w~~~~~~---~~~~~~~~~~~~~~~~~la~~y~~-------~~~v~~~el~NEP~~~~~~~~w~ 141 (281)
T PF00150_consen 82 LH----N------APGWANGGDG---YGNNDTAQAWFKSFWRALAKRYKD-------NPPVVGWELWNEPNGGNDDANWN 141 (281)
T ss_dssp EE----E------STTCSSSTST---TTTHHHHHHHHHHHHHHHHHHHTT-------TTTTEEEESSSSGCSTTSTTTTS
T ss_pred ec----c------Cccccccccc---cccchhhHHHHHhhhhhhccccCC-------CCcEEEEEecCCccccCCccccc
Confidence 52 1 2666332111 112233344455566667776653 34799999999997642110
Q ss_pred ---CcchHHHHHHHHHHHHhcCCccceEecC
Q 037832 194 ---GDRARVYGQWAAHMAIGLNITVPWIMCK 221 (711)
Q Consensus 194 ---~~~~~~y~~~l~~~~~~~g~~vp~~~~~ 221 (711)
...-.++.+.+.+.+|+.+.+.+++...
T Consensus 142 ~~~~~~~~~~~~~~~~~Ir~~~~~~~i~~~~ 172 (281)
T PF00150_consen 142 AQNPADWQDWYQRAIDAIRAADPNHLIIVGG 172 (281)
T ss_dssp HHHTHHHHHHHHHHHHHHHHTTSSSEEEEEE
T ss_pred cccchhhhhHHHHHHHHHHhcCCcceeecCC
Confidence 0112456677777788888887665533
No 12
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=98.85 E-value=2.5e-09 Score=98.23 Aligned_cols=65 Identities=29% Similarity=0.571 Sum_probs=47.6
Q ss_pred CCCceEEEEEEeCCCCCCceE-Ee--cCCCceEEEEEcCcccceecccccccCCCCCCCcccCCccCcccccCCCCCCce
Q 037832 617 NWPGTWYKTTFDAPEGNDPLA-LD--MRTMSKGLIWVNGHGVGRYWSASIAYGNCSPHPCYYGGFMNNQKCLSGCGKPSQ 693 (711)
Q Consensus 617 ~~~~~~Yk~tF~~p~~~d~~~-Ld--~~g~gKG~vwVNG~nlGRYW~~~~~~g~~G~~~~~~~G~~~~~~~~~~~g~PQq 693 (711)
..+..|||++|........+. |+ .....+++|||||++|||||+.+ | ||+
T Consensus 33 ~~g~~~Yrg~F~~~~~~~~~~~l~~~~g~~~~~~vwVNG~~~G~~~~~~------g---------------------~q~ 85 (111)
T PF13364_consen 33 HAGYLWYRGTFTGTGQDTSLTPLNIQGGNAFRASVWVNGWFLGSYWPGI------G---------------------PQT 85 (111)
T ss_dssp SSCEEEEEEEEETTTEEEEEE-EEECSSTTEEEEEEETTEEEEEEETTT------E---------------------CCE
T ss_pred CCCCEEEEEEEeCCCcceeEEEEeccCCCceEEEEEECCEEeeeecCCC------C---------------------ccE
Confidence 347899999996422111233 33 34578999999999999999765 6 999
Q ss_pred eeeecCCCCccCCCCe
Q 037832 694 IWYHVPRSWLKPTGNL 709 (711)
Q Consensus 694 tlYhVP~~~Lk~g~N~ 709 (711)
+++ ||+++|+.++|.
T Consensus 86 tf~-~p~~il~~~n~v 100 (111)
T PF13364_consen 86 TFS-VPAGILKYGNNV 100 (111)
T ss_dssp EEE-E-BTTBTTCEEE
T ss_pred EEE-eCceeecCCCEE
Confidence 997 999999987444
No 13
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=98.39 E-value=1.5e-06 Score=79.97 Aligned_cols=84 Identities=24% Similarity=0.218 Sum_probs=58.2
Q ss_pred ccccCCCCCCcceEEEEEEecCCCCCCcccCCCCCe-eee-cccceEEEEEECCEEEEEEecccCCCceEEEeeee-ecC
Q 037832 459 TEHLFLTRDTTDYLWYTTEVFIDPSEGFLYNGQDPL-LNI-MSAGHGLNVYVNDQLQGLHHGSLETPQVTFSKKVK-LRG 535 (711)
Q Consensus 459 ~Eql~~t~d~~GYl~Y~t~v~~~~~~~~~~~g~~~~-L~i-~~~~D~~~VfVng~~vG~~~~~~~~~~~~~~~~~~-l~~ 535 (711)
.+..+..+++.|++|||++|.....+. .-. |.+ .+.+.+++|||||+++|+..... ..+.+|++|.. |+.
T Consensus 24 ~l~~~~~g~~~g~~~Yrg~F~~~~~~~------~~~~l~~~~g~~~~~~vwVNG~~~G~~~~~~-g~q~tf~~p~~il~~ 96 (111)
T PF13364_consen 24 VLYASDYGFHAGYLWYRGTFTGTGQDT------SLTPLNIQGGNAFRASVWVNGWFLGSYWPGI-GPQTTFSVPAGILKY 96 (111)
T ss_dssp STCCGCGTSSSCEEEEEEEEETTTEEE------EEE-EEECSSTTEEEEEEETTEEEEEEETTT-ECCEEEEE-BTTBTT
T ss_pred eeccCccccCCCCEEEEEEEeCCCcce------eEEEEeccCCCceEEEEEECCEEeeeecCCC-CccEEEEeCceeecC
Confidence 456666677999999999996433221 012 333 36799999999999999988321 23466666664 555
Q ss_pred CccEEEEEEecCCC
Q 037832 536 GVNKISLQSVAVGL 549 (711)
Q Consensus 536 g~n~L~ILven~Gr 549 (711)
+.|+|.+|+.+||+
T Consensus 97 ~n~v~~vl~~~~g~ 110 (111)
T PF13364_consen 97 GNNVLVVLWDNMGH 110 (111)
T ss_dssp CEEEEEEEEE-STT
T ss_pred CCEEEEEEEeCCCC
Confidence 67788999999996
No 14
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=98.25 E-value=1.3e-05 Score=85.28 Aligned_cols=156 Identities=13% Similarity=0.159 Sum_probs=87.5
Q ss_pred ccceEEEEcCCcEE--ECCEEeEEEEEEeeCCC-----------CCcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCce
Q 037832 24 SVKSTVTYDRKGLI--INGQRRILFSGSIHYPR-----------STPEMWPDLLKKAKDGGLDIVDTYVFWNGHEPTRGK 90 (711)
Q Consensus 24 ~~~~~v~~d~~~~~--i~G~p~~~~sg~~hy~r-----------~~~~~W~~~l~~~ka~G~N~V~~yv~Wn~hEp~~G~ 90 (711)
+.-..|++.++.|. .+|++|.|.|-.+.+.- ..++.|++++..||++|+||||+|- ..|..
T Consensus 6 ~~~~pI~ikG~kff~~~~g~~F~ikGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY~----vdp~~-- 79 (314)
T PF03198_consen 6 AAVPPIEIKGNKFFYSKNGTRFFIKGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVYS----VDPSK-- 79 (314)
T ss_dssp TTS--EEEETTEEEETTT--B--EEEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES-------TTS--
T ss_pred ccCCCEEEECCEeEECCCCCEEEEeeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEEE----eCCCC--
Confidence 33457888999999 79999999998877522 3578899999999999999999962 23333
Q ss_pred eeeecchhHHHHHHHHHHcCCEEEeecCcccccccCCCCCCceecccCCcccccCCh--hHHHHHHHHHHHHHHHHHhcc
Q 037832 91 FYFEGRYDLVRFIKLAQQAGLYVTLRIGPYACAEWNFGAFPAWLKFIPGMEFRIDNQ--PFELEMQKWVTKIVDMLKAEK 168 (711)
Q Consensus 91 ~df~g~~dl~~fl~~a~~~gL~vilr~GPyicaEw~~GG~P~WL~~~p~~~~R~~d~--~y~~~~~~~~~~l~~~l~~~~ 168 (711)
|-++++++.++.|||||+..+. |...+-..+| .|-...-.-+.++++.++.++
T Consensus 80 -------nHd~CM~~~~~aGIYvi~Dl~~------------------p~~sI~r~~P~~sw~~~l~~~~~~vid~fa~Y~ 134 (314)
T PF03198_consen 80 -------NHDECMSAFADAGIYVILDLNT------------------PNGSINRSDPAPSWNTDLLDRYFAVIDAFAKYD 134 (314)
T ss_dssp ---------HHHHHHHHHTT-EEEEES-B------------------TTBS--TTS------HHHHHHHHHHHHHHTT-T
T ss_pred -------CHHHHHHHHHhCCCEEEEecCC------------------CCccccCCCCcCCCCHHHHHHHHHHHHHhccCC
Confidence 7889999999999999998642 2222333445 453332223344566677444
Q ss_pred cccccCCceEeecccccccchh--cccCcchHHHHHHHHHHHHhcCC-ccce
Q 037832 169 LFETQGGPIILSQIENEFELVE--WNLGDRARVYGQWAAHMAIGLNI-TVPW 217 (711)
Q Consensus 169 ~~~~~gGpII~~QiENEyg~~~--~~~~~~~~~y~~~l~~~~~~~g~-~vp~ 217 (711)
+++++=+.||.-.-. ..-.+.-|+..+-+|+-.++.+. .+|+
T Consensus 135 -------N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~R~IPV 179 (314)
T PF03198_consen 135 -------NTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGYRSIPV 179 (314)
T ss_dssp -------TEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS----E
T ss_pred -------ceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCce
Confidence 899999999995421 11112345555666666666555 4565
No 15
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=98.14 E-value=9.6e-06 Score=79.09 Aligned_cols=99 Identities=23% Similarity=0.322 Sum_probs=70.4
Q ss_pred CCCcceEEEEEEecCCCCCCcccCCCCCeeeecccceEEEEEECCEEEEEEecccCCCceEEEeeeeecCCc-cEEEEEE
Q 037832 466 RDTTDYLWYTTEVFIDPSEGFLYNGQDPLLNIMSAGHGLNVYVNDQLQGLHHGSLETPQVTFSKKVKLRGGV-NKISLQS 544 (711)
Q Consensus 466 ~d~~GYl~Y~t~v~~~~~~~~~~~g~~~~L~i~~~~D~~~VfVng~~vG~~~~~~~~~~~~~~~~~~l~~g~-n~L~ILv 544 (711)
....|+.|||++|..+... .+....|.+.++.+.+.|||||+++|...+.. ..+.++++-.|+.|. |+|.|.|
T Consensus 64 ~~~~~~~wYr~~f~lp~~~----~~~~~~L~f~gv~~~a~v~vNG~~vg~~~~~~--~~~~~dIt~~l~~g~~N~l~V~v 137 (167)
T PF02837_consen 64 WDYSGYAWYRRTFTLPADW----KGKRVFLRFEGVDYAAEVYVNGKLVGSHEGGY--TPFEFDITDYLKPGEENTLAVRV 137 (167)
T ss_dssp STCCSEEEEEEEEEESGGG----TTSEEEEEESEEESEEEEEETTEEEEEEESTT--S-EEEECGGGSSSEEEEEEEEEE
T ss_pred cccCceEEEEEEEEeCchh----cCceEEEEeccceEeeEEEeCCeEEeeeCCCc--CCeEEeChhhccCCCCEEEEEEE
Confidence 4478999999999876432 13346788999999999999999999987543 456677666688887 9999999
Q ss_pred ecCCCccccccc-cccCccccccEEEc
Q 037832 545 VAVGLPNIGTQF-EKWNLGVLGPVTLS 570 (711)
Q Consensus 545 en~Gr~n~G~~~-~~~~kGI~g~V~l~ 570 (711)
.+...-.+-+.. .....||.++|.|.
T Consensus 138 ~~~~~~~~~~~~~~~~~~GI~r~V~L~ 164 (167)
T PF02837_consen 138 DNWPDGSTIPGFDYFNYAGIWRPVWLE 164 (167)
T ss_dssp ESSSGGGCGBSSSEEE--EEESEEEEE
T ss_pred eecCCCceeecCcCCccCccccEEEEE
Confidence 865443321111 12468999999874
No 16
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=98.02 E-value=1.3e-05 Score=84.15 Aligned_cols=116 Identities=19% Similarity=0.294 Sum_probs=86.1
Q ss_pred CCCCCCCCceeeeecchhHHHHHHHHHHcCCEEEeecCcccccccCCCCCCceecccCCcccccCChhHHHHHHHHHHHH
Q 037832 81 WNGHEPTRGKFYFEGRYDLVRFIKLAQQAGLYVTLRIGPYACAEWNFGAFPAWLKFIPGMEFRIDNQPFELEMQKWVTKI 160 (711)
Q Consensus 81 Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~vilr~GPyicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l 160 (711)
|...||++|+|||+ .++++++.|+++||.|. ..+.+ |-. ..|.|+...+ .+..++++.+|++++
T Consensus 3 W~~~ep~~G~~n~~---~~D~~~~~a~~~gi~v~--gH~l~---W~~-~~P~W~~~~~-------~~~~~~~~~~~i~~v 66 (254)
T smart00633 3 WDSTEPSRGQFNFS---GADAIVNFAKENGIKVR--GHTLV---WHS-QTPDWVFNLS-------KETLLARLENHIKTV 66 (254)
T ss_pred cccccCCCCccChH---HHHHHHHHHHHCCCEEE--EEEEe---ecc-cCCHhhhcCC-------HHHHHHHHHHHHHHH
Confidence 89999999999999 89999999999999983 22222 433 6899987532 335567888888888
Q ss_pred HHHHHhcccccccCCceEeecccccccchhc------cc-CcchHHHHHHHHHHHHhcCCccceEecC
Q 037832 161 VDMLKAEKLFETQGGPIILSQIENEFELVEW------NL-GDRARVYGQWAAHMAIGLNITVPWIMCK 221 (711)
Q Consensus 161 ~~~l~~~~~~~~~gGpII~~QiENEyg~~~~------~~-~~~~~~y~~~l~~~~~~~g~~vp~~~~~ 221 (711)
+.+++ |.|..|+|=||.-.... .+ ...+.+|+...-+.+|+.+.++.++.++
T Consensus 67 ~~ry~---------g~i~~wdV~NE~~~~~~~~~~~~~w~~~~G~~~i~~af~~ar~~~P~a~l~~Nd 125 (254)
T smart00633 67 VGRYK---------GKIYAWDVVNEALHDNGSGLRRSVWYQILGEDYIEKAFRYAREADPDAKLFYND 125 (254)
T ss_pred HHHhC---------CcceEEEEeeecccCCCcccccchHHHhcChHHHHHHHHHHHHhCCCCEEEEec
Confidence 88776 46899999999643210 01 1134578888889999988888887764
No 17
>TIGR03356 BGL beta-galactosidase.
Probab=97.83 E-value=3.9e-05 Score=86.55 Aligned_cols=97 Identities=15% Similarity=0.132 Sum_probs=80.9
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCCCCCC-CceeeeecchhHHHHHHHHHHcCCEEEeecCcccccccCCCCCCceecc
Q 037832 58 EMWPDLLKKAKDGGLDIVDTYVFWNGHEPT-RGKFYFEGRYDLVRFIKLAQQAGLYVTLRIGPYACAEWNFGAFPAWLKF 136 (711)
Q Consensus 58 ~~W~~~l~~~ka~G~N~V~~yv~Wn~hEp~-~G~~df~g~~dl~~fl~~a~~~gL~vilr~GPyicaEw~~GG~P~WL~~ 136 (711)
..|++++++||++|+|++|+.|.|+..+|. +|++|.+|....+++|+.|.++||.+|+--= .=.+|.||.+
T Consensus 54 ~~y~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~--------Hfd~P~~l~~ 125 (427)
T TIGR03356 54 HRYEEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLY--------HWDLPQALED 125 (427)
T ss_pred HhHHHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeec--------cCCccHHHHh
Confidence 468899999999999999999999999999 7899998989999999999999999876531 1258999986
Q ss_pred cCCcccccCChhHHHHHHHHHHHHHHHHHh
Q 037832 137 IPGMEFRIDNQPFELEMQKWVTKIVDMLKA 166 (711)
Q Consensus 137 ~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~ 166 (711)
..+- .++...++..+|.+.+++++++
T Consensus 126 ~gGw----~~~~~~~~f~~ya~~~~~~~~d 151 (427)
T TIGR03356 126 RGGW----LNRDTAEWFAEYAAVVAERLGD 151 (427)
T ss_pred cCCC----CChHHHHHHHHHHHHHHHHhCC
Confidence 5442 3566777778888888887774
No 18
>PLN02705 beta-amylase
Probab=97.73 E-value=7.8e-05 Score=84.58 Aligned_cols=80 Identities=18% Similarity=0.258 Sum_probs=63.8
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCCCCC-CCceeeeecchhHHHHHHHHHHcCCEE--EeecCcccccccCCC----
Q 037832 56 TPEMWPDLLKKAKDGGLDIVDTYVFWNGHEP-TRGKFYFEGRYDLVRFIKLAQQAGLYV--TLRIGPYACAEWNFG---- 128 (711)
Q Consensus 56 ~~~~W~~~l~~~ka~G~N~V~~yv~Wn~hEp-~~G~~df~g~~dl~~fl~~a~~~gL~v--ilr~GPyicaEw~~G---- 128 (711)
.++.-+..|+++|++|+..|.+-|.|.+.|. .|++|||+| ..+++++|++.||++ ||.+ .-|+. +-|
T Consensus 266 ~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~YdWsg---Y~~L~~mvr~~GLKlqvVmSF--HqCGG-NVGD~~~ 339 (681)
T PLN02705 266 DPEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYVWSG---YRELFNIIREFKLKLQVVMAF--HEYGG-NASGNVM 339 (681)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--eccCC-CCCCccc
Confidence 4455788999999999999999999999998 699999996 567899999999996 4554 34554 222
Q ss_pred -CCCceecc----cCCcc
Q 037832 129 -AFPAWLKF----IPGME 141 (711)
Q Consensus 129 -G~P~WL~~----~p~~~ 141 (711)
-+|.|+.+ +|+|.
T Consensus 340 IPLP~WV~e~g~~nPDif 357 (681)
T PLN02705 340 ISLPQWVLEIGKDNQDIF 357 (681)
T ss_pred ccCCHHHHHhcccCCCce
Confidence 28999985 56664
No 19
>PLN02905 beta-amylase
Probab=97.69 E-value=0.0001 Score=83.83 Aligned_cols=112 Identities=18% Similarity=0.379 Sum_probs=80.7
Q ss_pred cccHHHHHHHHHHCCCCEEEEcccCCCCCC-CCceeeeecchhHHHHHHHHHHcCCEEE--eecCcccccccCCC-----
Q 037832 57 PEMWPDLLKKAKDGGLDIVDTYVFWNGHEP-TRGKFYFEGRYDLVRFIKLAQQAGLYVT--LRIGPYACAEWNFG----- 128 (711)
Q Consensus 57 ~~~W~~~l~~~ka~G~N~V~~yv~Wn~hEp-~~G~~df~g~~dl~~fl~~a~~~gL~vi--lr~GPyicaEw~~G----- 128 (711)
++.-+..|+++|++|+..|.+-|.|.+.|. .|++|||+| ..+++++|++.||++. +.+ .-|+- +-|
T Consensus 285 ~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~YdWsg---Y~~L~~mvr~~GLKlqvVMSF--HqCGG-NVGD~~~I 358 (702)
T PLN02905 285 PDGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYNWNG---YKRLFQMVRELKLKLQVVMSF--HECGG-NVGDDVCI 358 (702)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCcccc
Confidence 344678999999999999999999999998 799999996 5688999999999964 554 34554 112
Q ss_pred CCCceecc----cCCcccc------------------------cCChhHHHHHHHHHHHHHHHHHhcccccccCCceEee
Q 037832 129 AFPAWLKF----IPGMEFR------------------------IDNQPFELEMQKWVTKIVDMLKAEKLFETQGGPIILS 180 (711)
Q Consensus 129 G~P~WL~~----~p~~~~R------------------------~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~ 180 (711)
-+|.|+.+ +|+|.+. |--..|.+.++.|-..+.+.+. +|.|.-+
T Consensus 359 PLP~WV~e~g~~nPDifftDrsG~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~fl~--------~g~I~eI 430 (702)
T PLN02905 359 PLPHWVAEIGRSNPDIFFTDREGRRNPECLSWGIDKERILRGRTALEVYFDYMRSFRVEFDEFFE--------DGVISMV 430 (702)
T ss_pred cCCHHHHHhhhcCCCceEecCCCCccCceeeeecccccccCCCCHHHHHHHHHHHHHHHHHHHhc--------CCceEEE
Confidence 28999976 5666431 1113466656555555544443 4678888
Q ss_pred cc
Q 037832 181 QI 182 (711)
Q Consensus 181 Qi 182 (711)
||
T Consensus 431 ~V 432 (702)
T PLN02905 431 EV 432 (702)
T ss_pred Ee
Confidence 87
No 20
>PLN02801 beta-amylase
Probab=97.67 E-value=0.00012 Score=82.07 Aligned_cols=80 Identities=25% Similarity=0.454 Sum_probs=63.8
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCCCCC-CCceeeeecchhHHHHHHHHHHcCCEE--EeecCcccccccCCC----
Q 037832 56 TPEMWPDLLKKAKDGGLDIVDTYVFWNGHEP-TRGKFYFEGRYDLVRFIKLAQQAGLYV--TLRIGPYACAEWNFG---- 128 (711)
Q Consensus 56 ~~~~W~~~l~~~ka~G~N~V~~yv~Wn~hEp-~~G~~df~g~~dl~~fl~~a~~~gL~v--ilr~GPyicaEw~~G---- 128 (711)
.++.-+..|+++|++|+..|.+.|.|.+.|. .|++|||+| -.++.+++++.||++ |+.+ .-|+- +-|
T Consensus 35 ~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsg---Y~~l~~mvr~~GLKlq~vmSF--HqCGG-NVGD~~~ 108 (517)
T PLN02801 35 DEEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDWSA---YRSLFELVQSFGLKIQAIMSF--HQCGG-NVGDAVN 108 (517)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCccc
Confidence 4566789999999999999999999999998 699999996 568899999999996 4553 34544 112
Q ss_pred -CCCceecc----cCCcc
Q 037832 129 -AFPAWLKF----IPGME 141 (711)
Q Consensus 129 -G~P~WL~~----~p~~~ 141 (711)
-+|.|+.+ +|+|.
T Consensus 109 IpLP~WV~~~g~~~pDi~ 126 (517)
T PLN02801 109 IPIPQWVRDVGDSDPDIF 126 (517)
T ss_pred ccCCHHHHHhhccCCCce
Confidence 28999985 56653
No 21
>PLN00197 beta-amylase; Provisional
Probab=97.62 E-value=0.00016 Score=81.70 Aligned_cols=80 Identities=23% Similarity=0.485 Sum_probs=64.3
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCCCCC-CCceeeeecchhHHHHHHHHHHcCCEEE--eecCcccccccCCC----
Q 037832 56 TPEMWPDLLKKAKDGGLDIVDTYVFWNGHEP-TRGKFYFEGRYDLVRFIKLAQQAGLYVT--LRIGPYACAEWNFG---- 128 (711)
Q Consensus 56 ~~~~W~~~l~~~ka~G~N~V~~yv~Wn~hEp-~~G~~df~g~~dl~~fl~~a~~~gL~vi--lr~GPyicaEw~~G---- 128 (711)
.++.-+..|+++|++|++.|.+-|.|.+.|. .|++|||+| ..++++++++.||++. +.+ .-|+- +-|
T Consensus 125 ~~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdWsg---Y~~L~~mvr~~GLKlq~VmSF--HqCGG-NVGD~~~ 198 (573)
T PLN00197 125 RRKAMKASLQALKSAGVEGIMMDVWWGLVERESPGVYNWGG---YNELLEMAKRHGLKVQAVMSF--HQCGG-NVGDSCT 198 (573)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCccc
Confidence 4556789999999999999999999999998 899999996 5678999999999964 554 34554 122
Q ss_pred -CCCceecc----cCCcc
Q 037832 129 -AFPAWLKF----IPGME 141 (711)
Q Consensus 129 -G~P~WL~~----~p~~~ 141 (711)
-+|.|+.+ +|+|.
T Consensus 199 IpLP~WV~~~g~~dpDif 216 (573)
T PLN00197 199 IPLPKWVVEEVDKDPDLA 216 (573)
T ss_pred ccCCHHHHHhhccCCCce
Confidence 28999976 56664
No 22
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=97.61 E-value=0.0002 Score=76.72 Aligned_cols=225 Identities=20% Similarity=0.276 Sum_probs=111.2
Q ss_pred CCcEE-ECCEEeEEEEEEeeC---CCCCcccHHHHHHHHHHCCCCEEEEccc--CCCC-C-------C----CCceeeee
Q 037832 33 RKGLI-INGQRRILFSGSIHY---PRSTPEMWPDLLKKAKDGGLDIVDTYVF--WNGH-E-------P----TRGKFYFE 94 (711)
Q Consensus 33 ~~~~~-i~G~p~~~~sg~~hy---~r~~~~~W~~~l~~~ka~G~N~V~~yv~--Wn~h-E-------p----~~G~~df~ 94 (711)
++.|. -||+||+.++ .-.+ .+...+.|+.-|+..|+.|||+|++-++ |... . | .++.+||+
T Consensus 2 ~r~f~~~dG~Pff~lg-dT~W~~~~~~~~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~ 80 (289)
T PF13204_consen 2 GRHFVYADGTPFFWLG-DTAWSLFHRLTREEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFT 80 (289)
T ss_dssp SSSEEETTS-B--EEE-EE-TTHHHH--HHHHHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------T
T ss_pred CceEecCCCCEEeehh-HHHHHHhhCCCHHHHHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCC
Confidence 45666 7999999998 4444 3568899999999999999999998765 3321 1 1 12236776
Q ss_pred cc-----hhHHHHHHHHHHcCCEEEeec---CcccccccCCCCCCceecccCCcccccCChhHHHHHHHHHHHHHHHHHh
Q 037832 95 GR-----YDLVRFIKLAQQAGLYVTLRI---GPYACAEWNFGAFPAWLKFIPGMEFRIDNQPFELEMQKWVTKIVDMLKA 166 (711)
Q Consensus 95 g~-----~dl~~fl~~a~~~gL~vilr~---GPyicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~ 166 (711)
.- ..+++.|+.|.++||.+.|-| +||.-+-|-.| |..+ =.+..++|.+.|+++++.
T Consensus 81 ~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~wg~~~~~~~Wg~~--~~~m--------------~~e~~~~Y~~yv~~Ry~~ 144 (289)
T PF13204_consen 81 RPNPAYFDHLDRRIEKANELGIEAALVPFWGCPYVPGTWGFG--PNIM--------------PPENAERYGRYVVARYGA 144 (289)
T ss_dssp T----HHHHHHHHHHHHHHTT-EEEEESS-HHHHH---------TTSS---------------HHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHCCCeEEEEEEECCcccccccccc--ccCC--------------CHHHHHHHHHHHHHHHhc
Confidence 53 489999999999999975432 34443444333 1111 136678999999999996
Q ss_pred cccccccCCceEeecccccccchhcccCcchHHHHHHHHHHHHhcCCccce-EecCCC-CCCc-----ccccC--C-CCC
Q 037832 167 EKLFETQGGPIILSQIENEFELVEWNLGDRARVYGQWAAHMAIGLNITVPW-IMCKQA-NAPD-----PIIDT--C-NDF 236 (711)
Q Consensus 167 ~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~-~~~~~~-~~~~-----~~~~~--~-~~~ 236 (711)
++ +|| |=|-||+ . ......++.+.+.+.+++.+..-+. ++..+. ..++ +-++- . .|.
T Consensus 145 ~~-------Nvi-W~l~gd~-~----~~~~~~~~w~~~~~~i~~~dp~~L~T~H~~~~~~~~~~~~~~~Wldf~~~Qsgh 211 (289)
T PF13204_consen 145 YP-------NVI-WILGGDY-F----DTEKTRADWDAMARGIKENDPYQLITIHPCGRTSSPDWFHDEPWLDFNMYQSGH 211 (289)
T ss_dssp -S-------SEE-EEEESSS-------TTSSHHHHHHHHHHHHHH--SS-EEEEE-BTEBTHHHHTT-TT--SEEEB--S
T ss_pred CC-------CCE-EEecCcc-C----CCCcCHHHHHHHHHHHHhhCCCCcEEEeCCCCCCcchhhcCCCcceEEEeecCC
Confidence 54 455 7799999 1 1235667777888888776553332 332221 1110 00110 0 111
Q ss_pred cc---C-------CCC-CCCCCCCcccccc-ccccccccCCCCCcCCHHHHHHHHHHHHHhCC
Q 037832 237 YC---D-------WFS-PNKDYKPKMWTEN-WTAWVQQFGTPPLYRPHEDLAYSVLKFIQTGG 287 (711)
Q Consensus 237 ~~---~-------~~~-~~~p~~P~~~~E~-~~Gwf~~wG~~~~~~~~~~~~~~~~~~l~~g~ 287 (711)
.. + .+. ...|.+|.+..|- |.|.-..+.+.....+++++...+=+-+-+|+
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~p~KPvin~Ep~YEg~~~~~~~~~~~~~~~dvrr~aw~svlaGa 274 (289)
T PF13204_consen 212 NRYDQDNWYYLPEEFDYRRKPVKPVINGEPCYEGIPYSRWGYNGRFSAEDVRRRAWWSVLAGA 274 (289)
T ss_dssp --TT--THHHH--HHHHTSSS---EEESS---BT-BTTSS-TS-B--HHHHHHHHHHHHHCT-
T ss_pred CcccchHHHHHhhhhhhhhCCCCCEEcCcccccCCCCCcCcccCCCCHHHHHHHHHHHHhcCC
Confidence 00 0 011 4578999999997 55554444333344577777655434445565
No 23
>PLN02803 beta-amylase
Probab=97.58 E-value=0.00019 Score=80.78 Aligned_cols=80 Identities=23% Similarity=0.479 Sum_probs=63.2
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCCCCC-CCceeeeecchhHHHHHHHHHHcCCEEE--eecCcccccccCCC----
Q 037832 56 TPEMWPDLLKKAKDGGLDIVDTYVFWNGHEP-TRGKFYFEGRYDLVRFIKLAQQAGLYVT--LRIGPYACAEWNFG---- 128 (711)
Q Consensus 56 ~~~~W~~~l~~~ka~G~N~V~~yv~Wn~hEp-~~G~~df~g~~dl~~fl~~a~~~gL~vi--lr~GPyicaEw~~G---- 128 (711)
.++.-+..|+++|++|++.|.+-|.|.+.|. .|++|||+| -.++++++++.||++. +.+ .-|+- +-|
T Consensus 105 ~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSF--HqCGG-NVGD~~~ 178 (548)
T PLN02803 105 KPRAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNWEG---YAELVQMVQKHGLKLQVVMSF--HQCGG-NVGDSCS 178 (548)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCccc
Confidence 3455678999999999999999999999998 599999996 5688999999999964 553 34544 112
Q ss_pred -CCCceecc----cCCcc
Q 037832 129 -AFPAWLKF----IPGME 141 (711)
Q Consensus 129 -G~P~WL~~----~p~~~ 141 (711)
-+|.|+.+ +|+|.
T Consensus 179 IpLP~WV~e~~~~~pDi~ 196 (548)
T PLN02803 179 IPLPPWVLEEMSKNPDLV 196 (548)
T ss_pred ccCCHHHHHhhhcCCCce
Confidence 28999975 57764
No 24
>PLN02161 beta-amylase
Probab=97.47 E-value=0.00034 Score=78.39 Aligned_cols=83 Identities=19% Similarity=0.306 Sum_probs=63.3
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCCCCC-CCceeeeecchhHHHHHHHHHHcCCEEEeecCcccccccCCC-----C
Q 037832 56 TPEMWPDLLKKAKDGGLDIVDTYVFWNGHEP-TRGKFYFEGRYDLVRFIKLAQQAGLYVTLRIGPYACAEWNFG-----A 129 (711)
Q Consensus 56 ~~~~W~~~l~~~ka~G~N~V~~yv~Wn~hEp-~~G~~df~g~~dl~~fl~~a~~~gL~vilr~GPyicaEw~~G-----G 129 (711)
.++.-+..|+++|++|++.|.+-|.|.+.|. .|++|||+| -.++++++++.||++.+-..=.-|+. +-| -
T Consensus 115 ~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGG-NvGd~~~Ip 190 (531)
T PLN02161 115 RLKALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKWSL---YEELFRLISEAGLKLHVALCFHSNMH-LFGGKGGIS 190 (531)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCC-CCCCccCcc
Confidence 3444678999999999999999999999998 899999996 66889999999999643322234443 112 2
Q ss_pred CCceecc----cCCccc
Q 037832 130 FPAWLKF----IPGMEF 142 (711)
Q Consensus 130 ~P~WL~~----~p~~~~ 142 (711)
+|.|+.+ +|+|.+
T Consensus 191 LP~WV~~~g~~~pDi~f 207 (531)
T PLN02161 191 LPLWIREIGDVNKDIYY 207 (531)
T ss_pred CCHHHHhhhccCCCceE
Confidence 7999975 567643
No 25
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=97.12 E-value=0.0005 Score=75.77 Aligned_cols=75 Identities=20% Similarity=0.332 Sum_probs=52.6
Q ss_pred cHHHHHHHHHHCCCCEEEEcccCCCCCCC-CceeeeecchhHHHHHHHHHHcCCEEEeecCcccccc----cCCCCCCce
Q 037832 59 MWPDLLKKAKDGGLDIVDTYVFWNGHEPT-RGKFYFEGRYDLVRFIKLAQQAGLYVTLRIGPYACAE----WNFGAFPAW 133 (711)
Q Consensus 59 ~W~~~l~~~ka~G~N~V~~yv~Wn~hEp~-~G~~df~g~~dl~~fl~~a~~~gL~vilr~GPyicaE----w~~GG~P~W 133 (711)
.-+..|+++|++|+..|.+.|.|.+.|.. |++|||+| -.++.+++++.||++.+-..=.-|+- .-+=-+|.|
T Consensus 17 ~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~ydWs~---Y~~l~~~vr~~GLk~~~vmsfH~cGgNvgD~~~IpLP~W 93 (402)
T PF01373_consen 17 ALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYDWSG---YRELFEMVRDAGLKLQVVMSFHQCGGNVGDDCNIPLPSW 93 (402)
T ss_dssp HHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB---HH---HHHHHHHHHHTT-EEEEEEE-S-BSSSTTSSSEB-S-HH
T ss_pred HHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCccCcHH---HHHHHHHHHHcCCeEEEEEeeecCCCCCCCccCCcCCHH
Confidence 45789999999999999999999999997 99999995 67889999999999654322233432 111137999
Q ss_pred ecc
Q 037832 134 LKF 136 (711)
Q Consensus 134 L~~ 136 (711)
+.+
T Consensus 94 v~~ 96 (402)
T PF01373_consen 94 VWE 96 (402)
T ss_dssp HHH
T ss_pred HHh
Confidence 974
No 26
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=97.09 E-value=0.0022 Score=68.48 Aligned_cols=132 Identities=18% Similarity=0.286 Sum_probs=97.5
Q ss_pred HHHCCCCEEEEcccCCCCCCCCceeeeecchhHHHHHHHHHHcCCEEEeecCcccccccCCCCCCceecccCCcccccCC
Q 037832 67 AKDGGLDIVDTYVFWNGHEPTRGKFYFEGRYDLVRFIKLAQQAGLYVTLRIGPYACAEWNFGAFPAWLKFIPGMEFRIDN 146 (711)
Q Consensus 67 ~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~vilr~GPyicaEw~~GG~P~WL~~~p~~~~R~~d 146 (711)
.|+.+.=|-+.-.=|+..||++|.|+|+ --++..+.|+++||.+ +-=+.| |-+ -.|.|+..+. -+-
T Consensus 55 ~re~n~iTpenemKwe~i~p~~G~f~Fe---~AD~ia~FAr~h~m~l--hGHtLv---W~~-q~P~W~~~~e-----~~~ 120 (345)
T COG3693 55 ARECNQITPENEMKWEAIEPERGRFNFE---AADAIANFARKHNMPL--HGHTLV---WHS-QVPDWLFGDE-----LSK 120 (345)
T ss_pred HhhhcccccccccccccccCCCCccCcc---chHHHHHHHHHcCCee--ccceee---ecc-cCCchhhccc-----cCh
Confidence 4554444445556699999999999999 6789999999999965 322233 433 6899998644 245
Q ss_pred hhHHHHHHHHHHHHHHHHHhcccccccCCceEeecccccccc----hhc---ccCcchHHHHHHHHHHHHhcCCccceEe
Q 037832 147 QPFELEMQKWVTKIVDMLKAEKLFETQGGPIILSQIENEFEL----VEW---NLGDRARVYGQWAAHMAIGLNITVPWIM 219 (711)
Q Consensus 147 ~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~----~~~---~~~~~~~~y~~~l~~~~~~~g~~vp~~~ 219 (711)
++.++.+++++..++.+++ |.|+.|-|=||--. +.. ..+-.+.+|+++.-+.+|+.+.+--++.
T Consensus 121 ~~~~~~~e~hI~tV~~rYk---------g~~~sWDVVNE~vdd~g~~R~s~w~~~~~gpd~I~~aF~~AreadP~AkL~~ 191 (345)
T COG3693 121 EALAKMVEEHIKTVVGRYK---------GSVASWDVVNEAVDDQGSLRRSAWYDGGTGPDYIKLAFHIAREADPDAKLVI 191 (345)
T ss_pred HHHHHHHHHHHHHHHHhcc---------CceeEEEecccccCCCchhhhhhhhccCCccHHHHHHHHHHHhhCCCceEEe
Confidence 7889999999999999998 35999999999843 111 1223567899999999998877766766
Q ss_pred cC
Q 037832 220 CK 221 (711)
Q Consensus 220 ~~ 221 (711)
++
T Consensus 192 ND 193 (345)
T COG3693 192 ND 193 (345)
T ss_pred ec
Confidence 55
No 27
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=97.01 E-value=0.00054 Score=78.03 Aligned_cols=97 Identities=15% Similarity=0.189 Sum_probs=74.4
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCCCCCC--CceeeeecchhHHHHHHHHHHcCCEEEeecCcccccccCCCCCCceec
Q 037832 58 EMWPDLLKKAKDGGLDIVDTYVFWNGHEPT--RGKFYFEGRYDLVRFIKLAQQAGLYVTLRIGPYACAEWNFGAFPAWLK 135 (711)
Q Consensus 58 ~~W~~~l~~~ka~G~N~V~~yv~Wn~hEp~--~G~~df~g~~dl~~fl~~a~~~gL~vilr~GPyicaEw~~GG~P~WL~ 135 (711)
..|+++|+.||++|+|+.|+-|.|+-.+|. +|++|-.|...-+++|+.+.++||..|+-- -.-.+|.||.
T Consensus 58 ~~y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL--------~H~~~P~~l~ 129 (455)
T PF00232_consen 58 HRYKEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTL--------YHFDLPLWLE 129 (455)
T ss_dssp HHHHHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEE--------ESS--BHHHH
T ss_pred hhhhHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeee--------eeccccccee
Confidence 458999999999999999999999999999 699999999999999999999999976552 1346899998
Q ss_pred ccCCcccccCChhHHHHHHHHHHHHHHHHHh
Q 037832 136 FIPGMEFRIDNQPFELEMQKWVTKIVDMLKA 166 (711)
Q Consensus 136 ~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~ 166 (711)
+.-+- .++...+...+|.+.+++.+.+
T Consensus 130 ~~ggw----~~~~~~~~F~~Ya~~~~~~~gd 156 (455)
T PF00232_consen 130 DYGGW----LNRETVDWFARYAEFVFERFGD 156 (455)
T ss_dssp HHTGG----GSTHHHHHHHHHHHHHHHHHTT
T ss_pred ecccc----cCHHHHHHHHHHHHHHHHHhCC
Confidence 74442 3466777778888888888873
No 28
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=96.98 E-value=0.0026 Score=69.33 Aligned_cols=143 Identities=21% Similarity=0.289 Sum_probs=78.9
Q ss_pred HHHHHHHHHCCCCEEEEcccCCCCCCCC-ceeeeecchhHHHHHHHHHHcCCEEEeecCcccccccCCCCCCceecccCC
Q 037832 61 PDLLKKAKDGGLDIVDTYVFWNGHEPTR-GKFYFEGRYDLVRFIKLAQQAGLYVTLRIGPYACAEWNFGAFPAWLKFIPG 139 (711)
Q Consensus 61 ~~~l~~~ka~G~N~V~~yv~Wn~hEp~~-G~~df~g~~dl~~fl~~a~~~gL~vilr~GPyicaEw~~GG~P~WL~~~p~ 139 (711)
+|.|+.||+.|+|+||.=| |+ .|.. |..|.+ +..+..+.|+++||.|+|.+- | -.-|.--|- ...|.
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-wv--~P~~~g~~~~~---~~~~~akrak~~Gm~vlldfH-Y-SD~WaDPg~----Q~~P~ 94 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-WV--NPYDGGYNDLE---DVIALAKRAKAAGMKVLLDFH-Y-SDFWADPGK----QNKPA 94 (332)
T ss_dssp --HHHHHHHTT--EEEEEE--S--S-TTTTTTSHH---HHHHHHHHHHHTT-EEEEEE--S-SSS--BTTB-----B--T
T ss_pred CCHHHHHHhcCCCeEEEEe-cc--CCcccccCCHH---HHHHHHHHHHHCCCeEEEeec-c-cCCCCCCCC----CCCCc
Confidence 5899999999999999977 54 4554 555555 566666777889999998863 1 112222110 00111
Q ss_pred cccccCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeecccccccc--hhcccCc--c---hHHHHHHHHHHHHhcC
Q 037832 140 MEFRIDNQPFELEMQKWVTKIVDMLKAEKLFETQGGPIILSQIENEFEL--VEWNLGD--R---ARVYGQWAAHMAIGLN 212 (711)
Q Consensus 140 ~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~--~~~~~~~--~---~~~y~~~l~~~~~~~g 212 (711)
--.--+-..-.+++..|...++..|++ +|=.+=||||.||... . .+.+. . -.+++..-.+.+|+.+
T Consensus 95 aW~~~~~~~l~~~v~~yT~~vl~~l~~------~G~~pd~VQVGNEin~Gml-wp~g~~~~~~~~a~ll~ag~~AVr~~~ 167 (332)
T PF07745_consen 95 AWANLSFDQLAKAVYDYTKDVLQALKA------AGVTPDMVQVGNEINNGML-WPDGKPSNWDNLAKLLNAGIKAVREVD 167 (332)
T ss_dssp TCTSSSHHHHHHHHHHHHHHHHHHHHH------TT--ESEEEESSSGGGEST-BTTTCTT-HHHHHHHHHHHHHHHHTHS
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHH------CCCCccEEEeCcccccccc-CcCCCccCHHHHHHHHHHHHHHHHhcC
Confidence 000013345678899999999999994 4557889999999843 2 11121 1 1234444456666655
Q ss_pred Cccce-EecCC
Q 037832 213 ITVPW-IMCKQ 222 (711)
Q Consensus 213 ~~vp~-~~~~~ 222 (711)
..+.+ +++++
T Consensus 168 p~~kV~lH~~~ 178 (332)
T PF07745_consen 168 PNIKVMLHLAN 178 (332)
T ss_dssp STSEEEEEES-
T ss_pred CCCcEEEEECC
Confidence 54443 55554
No 29
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=96.92 E-value=0.012 Score=58.07 Aligned_cols=136 Identities=18% Similarity=0.181 Sum_probs=80.6
Q ss_pred CCCCcccHHHHHHHHHHCCCCEEEEcccCCCCC-----CC---CceeeeecchhHHHHHHHHHHcCCEEEeecCcccccc
Q 037832 53 PRSTPEMWPDLLKKAKDGGLDIVDTYVFWNGHE-----PT---RGKFYFEGRYDLVRFIKLAQQAGLYVTLRIGPYACAE 124 (711)
Q Consensus 53 ~r~~~~~W~~~l~~~ka~G~N~V~~yv~Wn~hE-----p~---~G~~df~g~~dl~~fl~~a~~~gL~vilr~GPyicaE 124 (711)
-.++++.|+++++.||++|+++|=+- |...+ |. ++.|.-.....|+.+|++|++.||+|.+-.+ ..
T Consensus 15 ~~~~~~~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~--~~-- 88 (166)
T PF14488_consen 15 QNWTPAQWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLY--FD-- 88 (166)
T ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCC--CC--
Confidence 46899999999999999999998532 22211 11 2223333445899999999999999987753 22
Q ss_pred cCCCCCCceecccCCcccccCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeecccccccchhcccCcchHHHHHHH
Q 037832 125 WNFGAFPAWLKFIPGMEFRIDNQPFELEMQKWVTKIVDMLKAEKLFETQGGPIILSQIENEFELVEWNLGDRARVYGQWA 204 (711)
Q Consensus 125 w~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l 204 (711)
|.|-.+ .|+.... .+-+.|+..|. . .+.+..+.=+|=|-.|+.... ....+..+.|
T Consensus 89 ------~~~w~~--------~~~~~~~---~~~~~v~~el~--~-~yg~h~sf~GWYip~E~~~~~----~~~~~~~~~l 144 (166)
T PF14488_consen 89 ------PDYWDQ--------GDLDWEA---ERNKQVADELW--Q-RYGHHPSFYGWYIPYEIDDYN----WNAPERFALL 144 (166)
T ss_pred ------chhhhc--------cCHHHHH---HHHHHHHHHHH--H-HHcCCCCCceEEEecccCCcc----cchHHHHHHH
Confidence 222221 2222211 11122444444 2 134455777888888987643 1345556666
Q ss_pred HHHHHhcCCccceE
Q 037832 205 AHMAIGLNITVPWI 218 (711)
Q Consensus 205 ~~~~~~~g~~vp~~ 218 (711)
.+.+++.--+.|+.
T Consensus 145 ~~~lk~~s~~~Pv~ 158 (166)
T PF14488_consen 145 GKYLKQISPGKPVM 158 (166)
T ss_pred HHHHHHhCCCCCeE
Confidence 66666553355543
No 30
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=96.89 E-value=0.0012 Score=71.77 Aligned_cols=157 Identities=16% Similarity=0.197 Sum_probs=107.1
Q ss_pred EEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEc--ccCCCCCCCCceeeeecchhHHHHHHHHHHcCCEEEeecCcccc
Q 037832 45 LFSGSIHYPRSTPEMWPDLLKKAKDGGLDIVDTY--VFWNGHEPTRGKFYFEGRYDLVRFIKLAQQAGLYVTLRIGPYAC 122 (711)
Q Consensus 45 ~~sg~~hy~r~~~~~W~~~l~~~ka~G~N~V~~y--v~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~vilr~GPyic 122 (711)
.+|.+++..+...+. ..+.+-..-||.|..- .-|...||++|+|||+ ..+++++.|+++||.|--.+ -
T Consensus 11 ~~G~av~~~~~~~~~---~~~~~~~~~Fn~~t~eN~~Kw~~~e~~~g~~~~~---~~D~~~~~a~~~g~~vrGH~--L-- 80 (320)
T PF00331_consen 11 PFGAAVNAQQLEDDP---RYRELFAKHFNSVTPENEMKWGSIEPEPGRFNFE---SADAILDWARENGIKVRGHT--L-- 80 (320)
T ss_dssp EEEEEEBGGGHTHHH---HHHHHHHHH-SEEEESSTTSHHHHESBTTBEE-H---HHHHHHHHHHHTT-EEEEEE--E--
T ss_pred CEEEEechhHcCCcH---HHHHHHHHhCCeeeeccccchhhhcCCCCccCcc---chhHHHHHHHhcCcceeeee--E--
Confidence 688889887665442 3444555568988874 6699999999999999 89999999999999975331 1
Q ss_pred cccCCCCCCceecccCCcccccC-ChhHHHHHHHHHHHHHHHHHhcccccccCCceEeecccccccchhc---------c
Q 037832 123 AEWNFGAFPAWLKFIPGMEFRID-NQPFELEMQKWVTKIVDMLKAEKLFETQGGPIILSQIENEFELVEW---------N 192 (711)
Q Consensus 123 aEw~~GG~P~WL~~~p~~~~R~~-d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~---------~ 192 (711)
=|.. ..|.|+...+.. ... .+...++++++++.++.++++ .|.|..|-|=||-=.... -
T Consensus 81 -vW~~-~~P~w~~~~~~~--~~~~~~~~~~~l~~~I~~v~~~y~~-------~g~i~~WDVvNE~i~~~~~~~~~r~~~~ 149 (320)
T PF00331_consen 81 -VWHS-QTPDWVFNLANG--SPDEKEELRARLENHIKTVVTRYKD-------KGRIYAWDVVNEAIDDDGNPGGLRDSPW 149 (320)
T ss_dssp -EESS-SS-HHHHTSTTS--SBHHHHHHHHHHHHHHHHHHHHTTT-------TTTESEEEEEES-B-TTSSSSSBCTSHH
T ss_pred -EEcc-cccceeeeccCC--CcccHHHHHHHHHHHHHHHHhHhcc-------ccceEEEEEeeecccCCCccccccCChh
Confidence 1433 789999875110 000 123788888999998888772 178999999999843211 0
Q ss_pred cCcchHHHHHHHHHHHHhcCCccceEecCC
Q 037832 193 LGDRARVYGQWAAHMAIGLNITVPWIMCKQ 222 (711)
Q Consensus 193 ~~~~~~~y~~~l~~~~~~~g~~vp~~~~~~ 222 (711)
+...+.+|+...-+.+++...++.++.++-
T Consensus 150 ~~~lG~~yi~~aF~~A~~~~P~a~L~~NDy 179 (320)
T PF00331_consen 150 YDALGPDYIADAFRAAREADPNAKLFYNDY 179 (320)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTSEEEEEES
T ss_pred hhcccHhHHHHHHHHHHHhCCCcEEEeccc
Confidence 112346788888889998888888887763
No 31
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=96.81 E-value=0.0031 Score=72.23 Aligned_cols=96 Identities=11% Similarity=0.082 Sum_probs=77.1
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCCCCCC--CceeeeecchhHHHHHHHHHHcCCEEEeecCcccccccCCCCCCceec
Q 037832 58 EMWPDLLKKAKDGGLDIVDTYVFWNGHEPT--RGKFYFEGRYDLVRFIKLAQQAGLYVTLRIGPYACAEWNFGAFPAWLK 135 (711)
Q Consensus 58 ~~W~~~l~~~ka~G~N~V~~yv~Wn~hEp~--~G~~df~g~~dl~~fl~~a~~~gL~vilr~GPyicaEw~~GG~P~WL~ 135 (711)
..|+++++.||++|+|+.|+-|.|+-..|. +|++|-.|....+++|+.+.++||..++-. -.=.+|.||.
T Consensus 69 hry~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL--------~H~dlP~~L~ 140 (477)
T PRK15014 69 GHYKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITL--------SHFEMPLHLV 140 (477)
T ss_pred cccHHHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------eCCCCCHHHH
Confidence 358899999999999999999999999997 567888899999999999999999977653 1225899997
Q ss_pred cc-CCcccccCChhHHHHHHHHHHHHHHHHH
Q 037832 136 FI-PGMEFRIDNQPFELEMQKWVTKIVDMLK 165 (711)
Q Consensus 136 ~~-p~~~~R~~d~~y~~~~~~~~~~l~~~l~ 165 (711)
.. -+- .++...++..+|.+.+++.++
T Consensus 141 ~~yGGW----~n~~~~~~F~~Ya~~~f~~fg 167 (477)
T PRK15014 141 QQYGSW----TNRKVVDFFVRFAEVVFERYK 167 (477)
T ss_pred HhcCCC----CChHHHHHHHHHHHHHHHHhc
Confidence 64 332 456666777777777777776
No 32
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=96.72 E-value=0.0034 Score=71.77 Aligned_cols=96 Identities=9% Similarity=0.093 Sum_probs=74.4
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCCCCCC--CceeeeecchhHHHHHHHHHHcCCEEEeecCcccccccCCCCCCceec
Q 037832 58 EMWPDLLKKAKDGGLDIVDTYVFWNGHEPT--RGKFYFEGRYDLVRFIKLAQQAGLYVTLRIGPYACAEWNFGAFPAWLK 135 (711)
Q Consensus 58 ~~W~~~l~~~ka~G~N~V~~yv~Wn~hEp~--~G~~df~g~~dl~~fl~~a~~~gL~vilr~GPyicaEw~~GG~P~WL~ 135 (711)
..|+++++.||++|+|+.|+-+.|+-.+|. +++.|-+|....+++|+.|.++||..++-. ..=.+|.||.
T Consensus 71 hry~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL--------~H~~~P~~l~ 142 (474)
T PRK09852 71 HRYKEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTL--------CHFDVPMHLV 142 (474)
T ss_pred hhhHHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------eCCCCCHHHH
Confidence 447899999999999999999999999997 556788888899999999999999977553 1225899987
Q ss_pred cc-CCcccccCChhHHHHHHHHHHHHHHHHH
Q 037832 136 FI-PGMEFRIDNQPFELEMQKWVTKIVDMLK 165 (711)
Q Consensus 136 ~~-p~~~~R~~d~~y~~~~~~~~~~l~~~l~ 165 (711)
.. -+- .++...++..+|.+.+++.+.
T Consensus 143 ~~~GGW----~~~~~~~~F~~ya~~~~~~fg 169 (474)
T PRK09852 143 TEYGSW----RNRKMVEFFSRYARTCFEAFD 169 (474)
T ss_pred HhcCCC----CCHHHHHHHHHHHHHHHHHhc
Confidence 53 332 345555666666666666665
No 33
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=96.72 E-value=0.0055 Score=68.88 Aligned_cols=115 Identities=16% Similarity=0.062 Sum_probs=73.5
Q ss_pred CcccH-----HHHHHHHHHCCCCEEEEcccCCCCCCC----CceeeeecchhHHHHHHHHHHcCCEEEee----cCcccc
Q 037832 56 TPEMW-----PDLLKKAKDGGLDIVDTYVFWNGHEPT----RGKFYFEGRYDLVRFIKLAQQAGLYVTLR----IGPYAC 122 (711)
Q Consensus 56 ~~~~W-----~~~l~~~ka~G~N~V~~yv~Wn~hEp~----~G~~df~g~~dl~~fl~~a~~~gL~vilr----~GPyic 122 (711)
....| ++.+..||.+|||+||+++.|..+++. |...+-+-...|++.|+.|+++||+|++- +|.-.|
T Consensus 66 ~~~~w~~~~~~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~~~~ 145 (407)
T COG2730 66 LESHWGNFITEEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGGNNG 145 (407)
T ss_pred chhccchhhhhhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCCCCCC
Confidence 45568 899999999999999999995444554 33331222237899999999999999988 322222
Q ss_pred cccCCCCCCceecccCCcccccCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeecccccccc
Q 037832 123 AEWNFGAFPAWLKFIPGMEFRIDNQPFELEMQKWVTKIVDMLKAEKLFETQGGPIILSQIENEFEL 188 (711)
Q Consensus 123 aEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~ 188 (711)
-| ..|....-. .....+++..+.+..|+.+.++ .-.||++|+=||.-.
T Consensus 146 ~~------~s~~~~~~~-----~~~~~~~~~~~~w~~ia~~f~~-------~~~VIg~~~~NEP~~ 193 (407)
T COG2730 146 HE------HSGYTSDYK-----EENENVEATIDIWKFIANRFKN-------YDTVIGFELINEPNG 193 (407)
T ss_pred cC------ccccccccc-----ccchhHHHHHHHHHHHHHhccC-------CCceeeeeeecCCcc
Confidence 21 222221100 0223344445555566666652 458999999999963
No 34
>PRK10150 beta-D-glucuronidase; Provisional
Probab=96.57 E-value=0.011 Score=69.69 Aligned_cols=100 Identities=24% Similarity=0.225 Sum_probs=69.2
Q ss_pred CCcceEEEEEEecCCCCCCcccCCCCCeeeecccceEEEEEECCEEEEEEecccCCCceEEEeeeeecCCc-cEEEEEEe
Q 037832 467 DTTDYLWYTTEVFIDPSEGFLYNGQDPLLNIMSAGHGLNVYVNDQLQGLHHGSLETPQVTFSKKVKLRGGV-NKISLQSV 545 (711)
Q Consensus 467 d~~GYl~Y~t~v~~~~~~~~~~~g~~~~L~i~~~~D~~~VfVng~~vG~~~~~~~~~~~~~~~~~~l~~g~-n~L~ILve 545 (711)
+..|..|||++|.++... .+....|.+.++.-.+.|||||+.||...+.. ..+.+++.-.|+.|. |+|.|.|.
T Consensus 62 ~~~G~~WYrr~f~lp~~~----~gk~v~L~Fegv~~~a~V~lNG~~vg~~~~~~--~~f~~DIT~~l~~G~~n~L~V~v~ 135 (604)
T PRK10150 62 NYVGDVWYQREVFIPKGW----AGQRIVLRFGSVTHYAKVWVNGQEVMEHKGGY--TPFEADITPYVYAGKSVRITVCVN 135 (604)
T ss_pred CCcccEEEEEEEECCccc----CCCEEEEEECcccceEEEEECCEEeeeEcCCc--cceEEeCchhccCCCceEEEEEEe
Confidence 366899999999876431 23446788999999999999999999987543 446666655577775 49999997
Q ss_pred cCCCcc---ccccc-------------c-ccCccccccEEEcCc
Q 037832 546 AVGLPN---IGTQF-------------E-KWNLGVLGPVTLSGL 572 (711)
Q Consensus 546 n~Gr~n---~G~~~-------------~-~~~kGI~g~V~l~g~ 572 (711)
|.-+.. .|... + -...||..+|.|...
T Consensus 136 n~~~~~~~p~g~~~~~~~~~~k~~~~~d~~~~~GI~r~V~L~~~ 179 (604)
T PRK10150 136 NELNWQTLPPGNVIEDGNGKKKQKYNFDFFNYAGIHRPVMLYTT 179 (604)
T ss_pred cCCCcccCCCCccccCCccccccccccccccccCCCceEEEEEc
Confidence 742210 11110 0 136899999998543
No 35
>PLN02998 beta-glucosidase
Probab=96.52 E-value=0.0024 Score=73.38 Aligned_cols=96 Identities=16% Similarity=0.204 Sum_probs=72.1
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCCCCCC-CceeeeecchhHHHHHHHHHHcCCEEEeecCcccccccCCCCCCceecc
Q 037832 58 EMWPDLLKKAKDGGLDIVDTYVFWNGHEPT-RGKFYFEGRYDLVRFIKLAQQAGLYVTLRIGPYACAEWNFGAFPAWLKF 136 (711)
Q Consensus 58 ~~W~~~l~~~ka~G~N~V~~yv~Wn~hEp~-~G~~df~g~~dl~~fl~~a~~~gL~vilr~GPyicaEw~~GG~P~WL~~ 136 (711)
..|+++++.||+||+|+-|+-|.|+-.+|. .|.+|-.|...-+++|+.+.++||..++--= =| .+|.||.+
T Consensus 82 hry~EDi~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~-----H~---dlP~~L~~ 153 (497)
T PLN02998 82 HKYKEDVKLMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLH-----HF---DLPQALED 153 (497)
T ss_pred HhhHHHHHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEec-----CC---CCCHHHHH
Confidence 458999999999999999999999999996 6778888999999999999999998665421 13 47999976
Q ss_pred c-CCcccccCChhHHHHHHHHHHHHHHHHH
Q 037832 137 I-PGMEFRIDNQPFELEMQKWVTKIVDMLK 165 (711)
Q Consensus 137 ~-p~~~~R~~d~~y~~~~~~~~~~l~~~l~ 165 (711)
. -+- .++...++..+|.+.+++.+.
T Consensus 154 ~yGGW----~n~~~v~~F~~YA~~~~~~fg 179 (497)
T PLN02998 154 EYGGW----LSQEIVRDFTAYADTCFKEFG 179 (497)
T ss_pred hhCCc----CCchHHHHHHHHHHHHHHHhc
Confidence 3 442 233344444455555555444
No 36
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=96.51 E-value=0.0066 Score=69.45 Aligned_cols=96 Identities=14% Similarity=0.138 Sum_probs=73.6
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCCCCCC-CceeeeecchhHHHHHHHHHHcCCEEEeecCcccccccCCCCCCceecc
Q 037832 58 EMWPDLLKKAKDGGLDIVDTYVFWNGHEPT-RGKFYFEGRYDLVRFIKLAQQAGLYVTLRIGPYACAEWNFGAFPAWLKF 136 (711)
Q Consensus 58 ~~W~~~l~~~ka~G~N~V~~yv~Wn~hEp~-~G~~df~g~~dl~~fl~~a~~~gL~vilr~GPyicaEw~~GG~P~WL~~ 136 (711)
..|+++++.||++|+|+-|+-|.|+-.+|. +|.+|-.|...-+++|+.|.++||.-++-.= =| .+|.||.+
T Consensus 54 ~ry~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~-----H~---dlP~~L~~ 125 (469)
T PRK13511 54 HRYPEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLH-----HF---DTPEALHS 125 (469)
T ss_pred hhhHHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEec-----CC---CCcHHHHH
Confidence 347899999999999999999999999996 5788889999999999999999998665421 13 48999986
Q ss_pred cCCcccccCChhHHHHHHHHHHHHHHHHH
Q 037832 137 IPGMEFRIDNQPFELEMQKWVTKIVDMLK 165 (711)
Q Consensus 137 ~p~~~~R~~d~~y~~~~~~~~~~l~~~l~ 165 (711)
.-+= .++...++..+|.+.+++.+.
T Consensus 126 ~GGW----~n~~~v~~F~~YA~~~~~~fg 150 (469)
T PRK13511 126 NGDW----LNRENIDHFVRYAEFCFEEFP 150 (469)
T ss_pred cCCC----CCHHHHHHHHHHHHHHHHHhC
Confidence 5332 344555555555555555554
No 37
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=96.43 E-value=0.0084 Score=68.56 Aligned_cols=96 Identities=13% Similarity=0.119 Sum_probs=75.1
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCCCCCC-CceeeeecchhHHHHHHHHHHcCCEEEeecCcccccccCCCCCCceecc
Q 037832 58 EMWPDLLKKAKDGGLDIVDTYVFWNGHEPT-RGKFYFEGRYDLVRFIKLAQQAGLYVTLRIGPYACAEWNFGAFPAWLKF 136 (711)
Q Consensus 58 ~~W~~~l~~~ka~G~N~V~~yv~Wn~hEp~-~G~~df~g~~dl~~fl~~a~~~gL~vilr~GPyicaEw~~GG~P~WL~~ 136 (711)
..|+++++.||++|+|+-|+-|.|+-.+|. +|.+|=.|...-+++|+.|.++||..++--= =| -+|.||.+
T Consensus 53 hry~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~-----H~---dlP~~L~~ 124 (467)
T TIGR01233 53 HKYPVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLH-----HF---DTPEALHS 124 (467)
T ss_pred hhHHHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEecc-----CC---CCcHHHHH
Confidence 458899999999999999999999999996 6788888999999999999999999766531 13 48999986
Q ss_pred cCCcccccCChhHHHHHHHHHHHHHHHHH
Q 037832 137 IPGMEFRIDNQPFELEMQKWVTKIVDMLK 165 (711)
Q Consensus 137 ~p~~~~R~~d~~y~~~~~~~~~~l~~~l~ 165 (711)
.-+= .++...++..+|.+.+++.+.
T Consensus 125 ~GGW----~n~~~v~~F~~YA~~~f~~fg 149 (467)
T TIGR01233 125 NGDF----LNRENIEHFIDYAAFCFEEFP 149 (467)
T ss_pred cCCC----CCHHHHHHHHHHHHHHHHHhC
Confidence 5442 345555556666666666555
No 38
>PLN02814 beta-glucosidase
Probab=96.40 E-value=0.003 Score=72.67 Aligned_cols=96 Identities=17% Similarity=0.235 Sum_probs=72.9
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCCCCCC-CceeeeecchhHHHHHHHHHHcCCEEEeecCcccccccCCCCCCceecc
Q 037832 58 EMWPDLLKKAKDGGLDIVDTYVFWNGHEPT-RGKFYFEGRYDLVRFIKLAQQAGLYVTLRIGPYACAEWNFGAFPAWLKF 136 (711)
Q Consensus 58 ~~W~~~l~~~ka~G~N~V~~yv~Wn~hEp~-~G~~df~g~~dl~~fl~~a~~~gL~vilr~GPyicaEw~~GG~P~WL~~ 136 (711)
..|+++++.||++|+|+-|+-|.|+-.+|. +|.+|-+|...-+++|+.|.++||..++-. | =| -+|.||.+
T Consensus 77 hry~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL--~---H~---dlP~~L~~ 148 (504)
T PLN02814 77 HKYKEDVKLMAEMGLESFRFSISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTL--Y---HY---DLPQSLED 148 (504)
T ss_pred HhhHHHHHHHHHcCCCEEEEeccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEe--c---CC---CCCHHHHH
Confidence 458999999999999999999999999996 688999999999999999999999866542 1 24 37999986
Q ss_pred c-CCcccccCChhHHHHHHHHHHHHHHHHH
Q 037832 137 I-PGMEFRIDNQPFELEMQKWVTKIVDMLK 165 (711)
Q Consensus 137 ~-p~~~~R~~d~~y~~~~~~~~~~l~~~l~ 165 (711)
. -+= .++...++..+|.+.+++.+.
T Consensus 149 ~yGGW----~n~~~i~~F~~YA~~~f~~fg 174 (504)
T PLN02814 149 EYGGW----INRKIIEDFTAFADVCFREFG 174 (504)
T ss_pred hcCCc----CChhHHHHHHHHHHHHHHHhC
Confidence 4 332 344444444555555555554
No 39
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=96.35 E-value=0.0047 Score=70.81 Aligned_cols=96 Identities=13% Similarity=0.091 Sum_probs=71.9
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCCCCCC--CceeeeecchhHHHHHHHHHHcCCEEEeecCcccccccCCCCCCceec
Q 037832 58 EMWPDLLKKAKDGGLDIVDTYVFWNGHEPT--RGKFYFEGRYDLVRFIKLAQQAGLYVTLRIGPYACAEWNFGAFPAWLK 135 (711)
Q Consensus 58 ~~W~~~l~~~ka~G~N~V~~yv~Wn~hEp~--~G~~df~g~~dl~~fl~~a~~~gL~vilr~GPyicaEw~~GG~P~WL~ 135 (711)
..|+++++.||++|+|+-|+-|.|+-.+|. +|++|=.|...-+++|+.+.++||..++-. | =| .+|.||.
T Consensus 73 hry~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL--~---H~---dlP~~L~ 144 (478)
T PRK09593 73 HHYKEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTI--T---HF---DCPMHLI 144 (478)
T ss_pred HhhHHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--c---cc---CCCHHHH
Confidence 458999999999999999999999999997 667888898999999999999999866442 1 13 4899997
Q ss_pred cc-CCcccccCChhHHHHHHHHHHHHHHHHH
Q 037832 136 FI-PGMEFRIDNQPFELEMQKWVTKIVDMLK 165 (711)
Q Consensus 136 ~~-p~~~~R~~d~~y~~~~~~~~~~l~~~l~ 165 (711)
+. -+- .++...++..+|.+.+++.+.
T Consensus 145 ~~~GGW----~n~~~v~~F~~YA~~~~~~fg 171 (478)
T PRK09593 145 EEYGGW----RNRKMVGFYERLCRTLFTRYK 171 (478)
T ss_pred hhcCCC----CChHHHHHHHHHHHHHHHHhc
Confidence 64 442 233344444455555555444
No 40
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=96.30 E-value=0.013 Score=73.07 Aligned_cols=94 Identities=21% Similarity=0.317 Sum_probs=67.9
Q ss_pred ceEEEEEEecCCCCCCcccCCCCCeeeecccceEEEEEECCEEEEEEecccCCCceEEEeeeeecCCccEEEEEEecCCC
Q 037832 470 DYLWYTTEVFIDPSEGFLYNGQDPLLNIMSAGHGLNVYVNDQLQGLHHGSLETPQVTFSKKVKLRGGVNKISLQSVAVGL 549 (711)
Q Consensus 470 GYl~Y~t~v~~~~~~~~~~~g~~~~L~i~~~~D~~~VfVng~~vG~~~~~~~~~~~~~~~~~~l~~g~n~L~ILven~Gr 549 (711)
+--|||++|.++..- .+....|.+.++...+.|||||++||...+.. ..+.|++.--|+.|.|+|.|.|.+..
T Consensus 109 ~~g~Yrr~F~lp~~~----~gkrv~L~FeGV~s~a~VwvNG~~VG~~~g~~--~pfefDIT~~l~~G~N~LaV~V~~~~- 181 (1021)
T PRK10340 109 PTGAYQRTFTLSDGW----QGKQTIIKFDGVETYFEVYVNGQYVGFSKGSR--LTAEFDISAMVKTGDNLLCVRVMQWA- 181 (1021)
T ss_pred CeEEEEEEEEeCccc----ccCcEEEEECccceEEEEEECCEEeccccCCC--ccEEEEcchhhCCCccEEEEEEEecC-
Confidence 567999999876431 23446788999999999999999999876532 34666665557888999999997543
Q ss_pred ccccccccc----cCccccccEEEcCc
Q 037832 550 PNIGTQFEK----WNLGVLGPVTLSGL 572 (711)
Q Consensus 550 ~n~G~~~~~----~~kGI~g~V~l~g~ 572 (711)
.|..++. ...||..+|.|.-.
T Consensus 182 --d~s~le~qd~w~~sGI~R~V~L~~~ 206 (1021)
T PRK10340 182 --DSTYLEDQDMWWLAGIFRDVYLVGK 206 (1021)
T ss_pred --CCCccccCCccccccccceEEEEEe
Confidence 2332332 24899999988544
No 41
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=96.23 E-value=0.0052 Score=70.42 Aligned_cols=96 Identities=13% Similarity=0.120 Sum_probs=71.9
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCCCCCC--CceeeeecchhHHHHHHHHHHcCCEEEeecCcccccccCCCCCCceec
Q 037832 58 EMWPDLLKKAKDGGLDIVDTYVFWNGHEPT--RGKFYFEGRYDLVRFIKLAQQAGLYVTLRIGPYACAEWNFGAFPAWLK 135 (711)
Q Consensus 58 ~~W~~~l~~~ka~G~N~V~~yv~Wn~hEp~--~G~~df~g~~dl~~fl~~a~~~gL~vilr~GPyicaEw~~GG~P~WL~ 135 (711)
..|+++++.||+||+|+-|+-|.|+-.+|. +|++|=.|...-+++|+.|.++||.-++-. | =| -+|.||.
T Consensus 67 hry~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL--~---H~---dlP~~L~ 138 (476)
T PRK09589 67 HRYKEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTL--S---HF---EMPYHLV 138 (476)
T ss_pred HhhHHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--c---CC---CCCHHHH
Confidence 458999999999999999999999999997 566888899999999999999999866543 1 13 4899997
Q ss_pred cc-CCcccccCChhHHHHHHHHHHHHHHHHH
Q 037832 136 FI-PGMEFRIDNQPFELEMQKWVTKIVDMLK 165 (711)
Q Consensus 136 ~~-p~~~~R~~d~~y~~~~~~~~~~l~~~l~ 165 (711)
.. -+- .++...++..+|.+.+++.+.
T Consensus 139 ~~yGGW----~n~~~i~~F~~YA~~~f~~fg 165 (476)
T PRK09589 139 TEYGGW----RNRKLIDFFVRFAEVVFTRYK 165 (476)
T ss_pred HhcCCc----CChHHHHHHHHHHHHHHHHhc
Confidence 64 442 233444444555555555544
No 42
>PLN02849 beta-glucosidase
Probab=96.16 E-value=0.0049 Score=70.97 Aligned_cols=96 Identities=17% Similarity=0.226 Sum_probs=72.0
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCCCCCC-CceeeeecchhHHHHHHHHHHcCCEEEeecCcccccccCCCCCCceecc
Q 037832 58 EMWPDLLKKAKDGGLDIVDTYVFWNGHEPT-RGKFYFEGRYDLVRFIKLAQQAGLYVTLRIGPYACAEWNFGAFPAWLKF 136 (711)
Q Consensus 58 ~~W~~~l~~~ka~G~N~V~~yv~Wn~hEp~-~G~~df~g~~dl~~fl~~a~~~gL~vilr~GPyicaEw~~GG~P~WL~~ 136 (711)
..|+++++.||++|+|+-|+-|.|+-.+|. .|.+|=.|...-+++|+.+.++||.-++--= =| -+|.||.+
T Consensus 79 hrY~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~-----H~---dlP~~L~~ 150 (503)
T PLN02849 79 HKYKEDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLF-----HY---DHPQYLED 150 (503)
T ss_pred HhHHHHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeec-----CC---CCcHHHHH
Confidence 358999999999999999999999999996 4778888999999999999999999665420 13 48999976
Q ss_pred c-CCcccccCChhHHHHHHHHHHHHHHHHH
Q 037832 137 I-PGMEFRIDNQPFELEMQKWVTKIVDMLK 165 (711)
Q Consensus 137 ~-p~~~~R~~d~~y~~~~~~~~~~l~~~l~ 165 (711)
. -+- .++...++..+|.+.+++.+.
T Consensus 151 ~yGGW----~nr~~v~~F~~YA~~~f~~fg 176 (503)
T PLN02849 151 DYGGW----INRRIIKDFTAYADVCFREFG 176 (503)
T ss_pred hcCCc----CCchHHHHHHHHHHHHHHHhc
Confidence 3 442 234444444555555555544
No 43
>KOG2230 consensus Predicted beta-mannosidase [Carbohydrate transport and metabolism]
Probab=95.93 E-value=0.07 Score=60.63 Aligned_cols=149 Identities=20% Similarity=0.258 Sum_probs=99.8
Q ss_pred CcEEECCEEeEEEEEEeeCCC-----CCcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeeecchhHHHHHHHHHH
Q 037832 34 KGLIINGQRRILFSGSIHYPR-----STPEMWPDLLKKAKDGGLDIVDTYVFWNGHEPTRGKFYFEGRYDLVRFIKLAQQ 108 (711)
Q Consensus 34 ~~~~i~G~p~~~~sg~~hy~r-----~~~~~W~~~l~~~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~ 108 (711)
-.|.|||.|+++.++..-+.. .+-+.-+-.|+.++++|+|++|+ |.. |.| .=++|-++|.+
T Consensus 328 fyfkin~~pvflkg~nwip~s~f~dr~t~~~~~~LL~Sv~e~~MN~lRV---WGG-----GvY------Esd~FY~lad~ 393 (867)
T KOG2230|consen 328 FYFKINDEPVFLKGTNWIPVSMFRDRENIAKTEFLLDSVAEVGMNMLRV---WGG-----GVY------ESDYFYQLADS 393 (867)
T ss_pred eEEEEcCcEEEeecCCccChHHHHhhHHHHHHHHHHHHHHHhCcceEEE---ecC-----ccc------cchhHHHHhhh
Confidence 458899999999999876532 34455567899999999999998 543 444 34599999999
Q ss_pred cCCEEEeecCcccccccCCCCCCceecccCCcccccCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeeccccc--c
Q 037832 109 AGLYVTLRIGPYACAEWNFGAFPAWLKFIPGMEFRIDNQPFELEMQKWVTKIVDMLKAEKLFETQGGPIILSQIENE--F 186 (711)
Q Consensus 109 ~gL~vilr~GPyicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENE--y 186 (711)
.||.|--.. =+.||-. ..|..|++-++.=++.=+.+|+.| .+||.+.=.|| -
T Consensus 394 lGilVWQD~-MFACAlY------------------Pt~~eFl~sv~eEV~yn~~Rls~H-------pSviIfsgNNENEa 447 (867)
T KOG2230|consen 394 LGILVWQDM-MFACALY------------------PTNDEFLSSVREEVRYNAMRLSHH-------PSVIIFSGNNENEA 447 (867)
T ss_pred ccceehhhh-HHHhhcc------------------cCcHHHHHHHHHHHHHHHHhhccC-------CeEEEEeCCCccHH
Confidence 999875332 1345553 247789988887777766667644 47888875444 3
Q ss_pred cchhcccCc-------chHH----HHHHHHHHHHhcCCccceEecCC
Q 037832 187 ELVEWNLGD-------RARV----YGQWAAHMAIGLNITVPWIMCKQ 222 (711)
Q Consensus 187 g~~~~~~~~-------~~~~----y~~~l~~~~~~~g~~vp~~~~~~ 222 (711)
.-...-|+. .-++ |.+-++++.....-.+|++++..
T Consensus 448 Al~~nWy~~sf~~~~~~~kdyvlly~~~i~el~l~~~~srPfi~SSP 494 (867)
T KOG2230|consen 448 ALVQNWYGTSFERDRFESKDYVLLYANVIHELKLVSHSSRPFIVSSP 494 (867)
T ss_pred HHHhhhhcccccccchhhhhhhHHHHHHHHHHHhhcCCCCCceecCC
Confidence 211111221 1222 45557777777778889888654
No 44
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=95.90 E-value=0.027 Score=70.34 Aligned_cols=95 Identities=17% Similarity=0.203 Sum_probs=66.2
Q ss_pred cceEEEEEEecCCCCCCcccCCC-CCeeeecccceEEEEEECCEEEEEEecccCCCceEEEeeeeecCCccEEEEEEecC
Q 037832 469 TDYLWYTTEVFIDPSEGFLYNGQ-DPLLNIMSAGHGLNVYVNDQLQGLHHGSLETPQVTFSKKVKLRGGVNKISLQSVAV 547 (711)
Q Consensus 469 ~GYl~Y~t~v~~~~~~~~~~~g~-~~~L~i~~~~D~~~VfVng~~vG~~~~~~~~~~~~~~~~~~l~~g~n~L~ILven~ 547 (711)
.+-.|||++|.++.+- .+. +..|.+.++.-.+.|||||+++|...+. ...+.|++.--|+.|+|+|.|.|..-
T Consensus 119 n~~gwYrr~F~vp~~w----~~~~rv~L~FeGV~~~a~VwvNG~~VG~~~g~--~~pfefDIT~~l~~G~N~L~V~V~~~ 192 (1027)
T PRK09525 119 NPTGCYSLTFTVDESW----LQSGQTRIIFDGVNSAFHLWCNGRWVGYSQDS--RLPAEFDLSPFLRAGENRLAVMVLRW 192 (1027)
T ss_pred CCeEEEEEEEEeChhh----cCCCeEEEEECeeccEEEEEECCEEEEeecCC--CceEEEEChhhhcCCccEEEEEEEec
Confidence 3678999999876431 122 3578899999999999999999987653 23456666555788899999988432
Q ss_pred CCccccccccc----cCccccccEEEcCc
Q 037832 548 GLPNIGTQFEK----WNLGVLGPVTLSGL 572 (711)
Q Consensus 548 Gr~n~G~~~~~----~~kGI~g~V~l~g~ 572 (711)
..|..++. ...||..+|.|.-.
T Consensus 193 ---sdgs~~e~qd~w~~sGI~R~V~L~~~ 218 (1027)
T PRK09525 193 ---SDGSYLEDQDMWRMSGIFRDVSLLHK 218 (1027)
T ss_pred ---CCCCccccCCceeeccccceEEEEEc
Confidence 12322332 34699999988533
No 45
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=95.89 E-value=0.039 Score=58.35 Aligned_cols=115 Identities=25% Similarity=0.342 Sum_probs=72.2
Q ss_pred HHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeeecchhHHHHHHHHH---HcCCEEEeecCcccccccCCCCCCceecc
Q 037832 60 WPDLLKKAKDGGLDIVDTYVFWNGHEPTRGKFYFEGRYDLVRFIKLAQ---QAGLYVTLRIGPYACAEWNFGAFPAWLKF 136 (711)
Q Consensus 60 W~~~l~~~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~---~~gL~vilr~GPyicaEw~~GG~P~WL~~ 136 (711)
-+|.|+-+|+.|+|.||+-| |+.---..|.=-=.|+.|+.+.+++|+ ..||+|++.+= | ..=|. =|+- .+
T Consensus 65 ~qD~~~iLK~~GvNyvRlRv-wndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFH-Y-SDfwa---DPak-Q~ 137 (403)
T COG3867 65 RQDALQILKNHGVNYVRLRV-WNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFH-Y-SDFWA---DPAK-QK 137 (403)
T ss_pred HHHHHHHHHHcCcCeEEEEE-ecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeecc-c-hhhcc---Chhh-cC
Confidence 46899999999999999855 665433334333346779999998866 46999999862 1 00110 0100 00
Q ss_pred cCCcccccCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeeccccccc
Q 037832 137 IPGMEFRIDNQPFELEMQKWVTKIVDMLKAEKLFETQGGPIILSQIENEFE 187 (711)
Q Consensus 137 ~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg 187 (711)
.|.--.--+-..-.+++-.|.+..+..++++ |=-+=||||.||-.
T Consensus 138 kPkaW~~l~fe~lk~avy~yTk~~l~~m~~e------Gi~pdmVQVGNEtn 182 (403)
T COG3867 138 KPKAWENLNFEQLKKAVYSYTKYVLTTMKKE------GILPDMVQVGNETN 182 (403)
T ss_pred CcHHhhhcCHHHHHHHHHHHHHHHHHHHHHc------CCCccceEeccccC
Confidence 1211111122344567778888888888844 44677999999984
No 46
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=95.41 E-value=0.015 Score=56.59 Aligned_cols=43 Identities=26% Similarity=0.376 Sum_probs=35.7
Q ss_pred CCCceEEEEEEeCCCCC--CceEEecCCC-ceEEEEEcCcccceec
Q 037832 617 NWPGTWYKTTFDAPEGN--DPLALDMRTM-SKGLIWVNGHGVGRYW 659 (711)
Q Consensus 617 ~~~~~~Yk~tF~~p~~~--d~~~Ld~~g~-gKG~vwVNG~nlGRYW 659 (711)
..+..|||++|++|... ..++|.+.+. ....|||||+.+|+-.
T Consensus 66 ~~~~~wYr~~f~lp~~~~~~~~~L~f~gv~~~a~v~vNG~~vg~~~ 111 (167)
T PF02837_consen 66 YSGYAWYRRTFTLPADWKGKRVFLRFEGVDYAAEVYVNGKLVGSHE 111 (167)
T ss_dssp CCSEEEEEEEEEESGGGTTSEEEEEESEEESEEEEEETTEEEEEEE
T ss_pred cCceEEEEEEEEeCchhcCceEEEEeccceEeeEEEeCCeEEeeeC
Confidence 34679999999998743 3588998886 5899999999999975
No 47
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=94.85 E-value=0.16 Score=48.32 Aligned_cols=97 Identities=13% Similarity=0.144 Sum_probs=63.8
Q ss_pred HHHHHHHHCCCCEEEEccc-------C--CCCCCCCceeeeecchhHHHHHHHHHHcCCEEEeecCcccccccCCCCCCc
Q 037832 62 DLLKKAKDGGLDIVDTYVF-------W--NGHEPTRGKFYFEGRYDLVRFIKLAQQAGLYVTLRIGPYACAEWNFGAFPA 132 (711)
Q Consensus 62 ~~l~~~ka~G~N~V~~yv~-------W--n~hEp~~G~~df~g~~dl~~fl~~a~~~gL~vilr~GPyicaEw~~GG~P~ 132 (711)
+-++.+|++|+|+|.++.- | ..|.+.|+- ++.-|.++++.|++.||.|+.|...- -.|+-.--.|.
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L----~~Dllge~v~a~h~~Girv~ay~~~~-~d~~~~~~HPe 78 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGL----KRDLLGEQVEACHERGIRVPAYFDFS-WDEDAAERHPE 78 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCC----CcCHHHHHHHHHHHCCCEEEEEEeee-cChHHHHhCCc
Confidence 4567899999999998432 2 234455543 12367899999999999999997654 34444556799
Q ss_pred eecccCCcc-------------cccCChhHHHHHHHHHHHHHHH
Q 037832 133 WLKFIPGME-------------FRIDNQPFELEMQKWVTKIVDM 163 (711)
Q Consensus 133 WL~~~p~~~-------------~R~~d~~y~~~~~~~~~~l~~~ 163 (711)
|+..+++-+ .-+.|.+|++.+.+-+++|+..
T Consensus 79 W~~~~~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei~~~ 122 (132)
T PF14871_consen 79 WFVRDADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREILDR 122 (132)
T ss_pred eeeECCCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHHHHc
Confidence 998655422 1123457877666555555443
No 48
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=94.81 E-value=0.03 Score=63.17 Aligned_cols=96 Identities=16% Similarity=0.268 Sum_probs=71.9
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCCCCCCCc--eeeeecchhHHHHHHHHHHcCCEEEeecCcccccccCCCCCCceec
Q 037832 58 EMWPDLLKKAKDGGLDIVDTYVFWNGHEPTRG--KFYFEGRYDLVRFIKLAQQAGLYVTLRIGPYACAEWNFGAFPAWLK 135 (711)
Q Consensus 58 ~~W~~~l~~~ka~G~N~V~~yv~Wn~hEp~~G--~~df~g~~dl~~fl~~a~~~gL~vilr~GPyicaEw~~GG~P~WL~ 135 (711)
..++++++.||+||+|+.|+-|.|+-.-|..+ +.|=.|...-+++++.|.++|+.-++-.= -| -+|.||.
T Consensus 59 hrYkeDi~L~~emG~~~~R~SI~WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~-----Hf---d~P~~L~ 130 (460)
T COG2723 59 HRYKEDIALAKEMGLNAFRTSIEWSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLY-----HF---DLPLWLQ 130 (460)
T ss_pred hhhHHHHHHHHHcCCCEEEeeeeEEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEec-----cc---CCcHHHh
Confidence 34789999999999999999999999999654 48888999999999999999999665531 13 3799998
Q ss_pred cc-CCcccccCChhHHHHHHHHHHHHHHHHH
Q 037832 136 FI-PGMEFRIDNQPFELEMQKWVTKIVDMLK 165 (711)
Q Consensus 136 ~~-p~~~~R~~d~~y~~~~~~~~~~l~~~l~ 165 (711)
+. -|= .+..-.++..+|.+.+++++.
T Consensus 131 ~~ygGW----~nR~~i~~F~~ya~~vf~~f~ 157 (460)
T COG2723 131 KPYGGW----ENRETVDAFARYAATVFERFG 157 (460)
T ss_pred hccCCc----cCHHHHHHHHHHHHHHHHHhc
Confidence 75 342 233334455555555555555
No 49
>PRK09936 hypothetical protein; Provisional
Probab=93.74 E-value=0.24 Score=52.66 Aligned_cols=58 Identities=28% Similarity=0.378 Sum_probs=46.8
Q ss_pred CCCCcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeeecc-hhHHHHHHHHHHcCCEEEee
Q 037832 53 PRSTPEMWPDLLKKAKDGGLDIVDTYVFWNGHEPTRGKFYFEGR-YDLVRFIKLAQQAGLYVTLR 116 (711)
Q Consensus 53 ~r~~~~~W~~~l~~~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~-~dl~~fl~~a~~~gL~vilr 116 (711)
.+++++.|+++++.+|+.||+|+- |-|...-- =||.+. .+|.+.++.|++.||.|++.
T Consensus 33 ~~~~~~qWq~~~~~~~~~G~~tLi--vQWt~yG~----~~fg~~~g~La~~l~~A~~~Gl~v~vG 91 (296)
T PRK09936 33 SQVTDTQWQGLWSQLRLQGFDTLV--VQWTRYGD----ADFGGQRGWLAKRLAAAQQAGLKLVVG 91 (296)
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEE--EEeeeccC----CCcccchHHHHHHHHHHHHcCCEEEEc
Confidence 468999999999999999999864 45654411 178764 49999999999999998864
No 50
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=91.86 E-value=0.56 Score=50.96 Aligned_cols=117 Identities=21% Similarity=0.236 Sum_probs=69.5
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccC-------CCCCCC-------Cce-eeeecchhHHHHHHHHHHcCCEEEeecCcc
Q 037832 56 TPEMWPDLLKKAKDGGLDIVDTYVFW-------NGHEPT-------RGK-FYFEGRYDLVRFIKLAQQAGLYVTLRIGPY 120 (711)
Q Consensus 56 ~~~~W~~~l~~~ka~G~N~V~~yv~W-------n~hEp~-------~G~-~df~g~~dl~~fl~~a~~~gL~vilr~GPy 120 (711)
.++.-++.|++++++|||+|=.-|.+ +-.+|. +|. -.|+ -|..+|+.|++.||.|..+. .+
T Consensus 17 ~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~D---pL~~~I~eaHkrGlevHAW~-~~ 92 (311)
T PF02638_consen 17 SKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFD---PLEFMIEEAHKRGLEVHAWF-RV 92 (311)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCcc---HHHHHHHHHHHcCCEEEEEE-Ee
Confidence 56777899999999999999755532 122221 121 0133 79999999999999998765 11
Q ss_pred cccccC----CCCCCceec-ccCCccccc----CChh----HHHHHHHHHHHHHHHHHhcccccccCCceEeeccc
Q 037832 121 ACAEWN----FGAFPAWLK-FIPGMEFRI----DNQP----FELEMQKWVTKIVDMLKAEKLFETQGGPIILSQIE 183 (711)
Q Consensus 121 icaEw~----~GG~P~WL~-~~p~~~~R~----~d~~----y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiE 183 (711)
-...-. .-..|.|+. +.++..... .+.. -..+|+.++..++..|.+ .+ +|=++|++
T Consensus 93 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~-~Y------dvDGIhlD 161 (311)
T PF02638_consen 93 GFNAPDVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVK-NY------DVDGIHLD 161 (311)
T ss_pred ecCCCchhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHh-cC------CCCeEEec
Confidence 111001 112588875 455532222 1111 237788888876655542 22 46677776
No 51
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=91.76 E-value=2.8 Score=49.79 Aligned_cols=57 Identities=25% Similarity=0.260 Sum_probs=40.2
Q ss_pred HHH-HHHHHCCCCEEEE-cccCCCCCCCCc---------eeeeecchhHHHHHHHHHHcCCEEEeecC
Q 037832 62 DLL-KKAKDGGLDIVDT-YVFWNGHEPTRG---------KFYFEGRYDLVRFIKLAQQAGLYVTLRIG 118 (711)
Q Consensus 62 ~~l-~~~ka~G~N~V~~-yv~Wn~hEp~~G---------~~df~g~~dl~~fl~~a~~~gL~vilr~G 118 (711)
++| .-+|++|+|+|++ +|+.+-....=| .=.|.+..+|.+|++.|+++||.|||..=
T Consensus 160 ~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~V 227 (613)
T TIGR01515 160 DQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILDWV 227 (613)
T ss_pred HHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 354 7789999999998 676432110000 11355567999999999999999999843
No 52
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=90.95 E-value=0.17 Score=56.91 Aligned_cols=157 Identities=15% Similarity=0.098 Sum_probs=104.6
Q ss_pred cEEECCEEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEcccCCCC-CC---CCceeee-ecchhHHHHHHHHHHc
Q 037832 35 GLIINGQRRILFSGSIHYPRSTPEMWPDLLKKAKDGGLDIVDTYVFWNGH-EP---TRGKFYF-EGRYDLVRFIKLAQQA 109 (711)
Q Consensus 35 ~~~i~G~p~~~~sg~~hy~r~~~~~W~~~l~~~ka~G~N~V~~yv~Wn~h-Ep---~~G~~df-~g~~dl~~fl~~a~~~ 109 (711)
.|.++++++..++..--++++..++-+++|+.|+.+|++++|.. -+- |+ ++|.-+- ++..-++.|++.|.++
T Consensus 3 ~F~Lg~n~wprIanikmw~~~~~~ei~~dle~a~~vg~k~lR~f---iLDgEdc~d~~G~~na~s~~~y~~~fla~a~~l 79 (587)
T COG3934 3 VFALGLNRWPRIANIKMWPAIGNREIKADLEPAGFVGVKDLRLF---ILDGEDCRDKEGYRNAGSNVWYAAWFLAPAGYL 79 (587)
T ss_pred eEEeccccchhhhhhhHHHHhhhhhhhcccccccCccceeEEEE---EecCcchhhhhceecccccHHHHHHHhhhcccC
Confidence 47888888888877777777777777889999999999999995 333 55 3443332 2356889999999999
Q ss_pred CCEEEeecCcccccccCCCCCC---ceec-ccCCcccccCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeeccccc
Q 037832 110 GLYVTLRIGPYACAEWNFGAFP---AWLK-FIPGMEFRIDNQPFELEMQKWVTKIVDMLKAEKLFETQGGPIILSQIENE 185 (711)
Q Consensus 110 gL~vilr~GPyicaEw~~GG~P---~WL~-~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENE 185 (711)
+|+|+++. |.+==.+||.= .|-. +.|+-.+ .|+.++..-++|+..+++-++ ....|.+|-+-||
T Consensus 80 ~lkvlitl---ivg~~hmgg~Nw~Ipwag~~~pdn~i--yD~k~~~~~kkyvedlVk~yk-------~~ptI~gw~l~Ne 147 (587)
T COG3934 80 DLKVLITL---IVGLKHMGGTNWRIPWAGEQSPDNVI--YDPKFRGPGKKYVEDLVKPYK-------LDPTIAGWALRNE 147 (587)
T ss_pred cceEEEEE---eecccccCcceeEeecCCCCCccccc--cchhhcccHHHHHHHHhhhhc-------cChHHHHHHhcCC
Confidence 99998763 22211244531 2221 1233211 256666666778777776554 3458889999999
Q ss_pred ccchhcccCcchHHHHHHHHHHHH
Q 037832 186 FELVEWNLGDRARVYGQWAAHMAI 209 (711)
Q Consensus 186 yg~~~~~~~~~~~~y~~~l~~~~~ 209 (711)
..... ...+..+++|+++|+.
T Consensus 148 --~lv~~-p~s~N~f~~w~~emy~ 168 (587)
T COG3934 148 --PLVEA-PISVNNFWDWSGEMYA 168 (587)
T ss_pred --ccccc-cCChhHHHHHHHHHHH
Confidence 32111 1256789999999974
No 53
>smart00642 Aamy Alpha-amylase domain.
Probab=90.81 E-value=0.62 Score=45.93 Aligned_cols=66 Identities=15% Similarity=0.146 Sum_probs=45.6
Q ss_pred cHHHHHHHHHHCCCCEEEEcccCCCCC-------CCCcee-----eeecchhHHHHHHHHHHcCCEEEeecCcccccc
Q 037832 59 MWPDLLKKAKDGGLDIVDTYVFWNGHE-------PTRGKF-----YFEGRYDLVRFIKLAQQAGLYVTLRIGPYACAE 124 (711)
Q Consensus 59 ~W~~~l~~~ka~G~N~V~~yv~Wn~hE-------p~~G~~-----df~g~~dl~~fl~~a~~~gL~vilr~GPyicaE 124 (711)
-+.+.|.-+|++|+|+|.+.=++...+ -.+..| .|....++.++++.|+++||.||+..=|-=++.
T Consensus 20 gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~NH~~~ 97 (166)
T smart00642 20 GIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVINHTSD 97 (166)
T ss_pred HHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC
Confidence 356677789999999999743322221 111222 455678999999999999999999875544444
No 54
>PRK05402 glycogen branching enzyme; Provisional
Probab=90.52 E-value=3.6 Score=49.90 Aligned_cols=51 Identities=27% Similarity=0.384 Sum_probs=37.6
Q ss_pred HHHHHHCCCCEEEE-ccc-------CCC-----CCCCCceeeeecchhHHHHHHHHHHcCCEEEeec
Q 037832 64 LKKAKDGGLDIVDT-YVF-------WNG-----HEPTRGKFYFEGRYDLVRFIKLAQQAGLYVTLRI 117 (711)
Q Consensus 64 l~~~ka~G~N~V~~-yv~-------Wn~-----hEp~~G~~df~g~~dl~~fl~~a~~~gL~vilr~ 117 (711)
|.-+|++|+|+|.. +|+ |.. ..+.+ .|.+..+|.+|++.|+++||.|||..
T Consensus 272 ~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~---~~Gt~~dfk~lV~~~H~~Gi~VilD~ 335 (726)
T PRK05402 272 IPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTS---RFGTPDDFRYFVDACHQAGIGVILDW 335 (726)
T ss_pred HHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCc---ccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 36779999999997 454 221 11121 35566799999999999999999884
No 55
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=90.46 E-value=34 Score=38.38 Aligned_cols=244 Identities=14% Similarity=0.131 Sum_probs=123.5
Q ss_pred CCCcccHHHHHHHHHHCCCCEEEEc-------ccCCCCCCCCceeeee-cchhHHHHHHHHHHcCCEEEeecCccccccc
Q 037832 54 RSTPEMWPDLLKKAKDGGLDIVDTY-------VFWNGHEPTRGKFYFE-GRYDLVRFIKLAQQAGLYVTLRIGPYACAEW 125 (711)
Q Consensus 54 r~~~~~W~~~l~~~ka~G~N~V~~y-------v~Wn~hEp~~G~~df~-g~~dl~~fl~~a~~~gL~vilr~GPyicaEw 125 (711)
+..++.| .+.+|++|+..|-.- -.|.-....-..-+-. ++.-|.++.+.|+++||++-+=-.+ -+|
T Consensus 80 ~fD~~~W---a~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~~~pkrDiv~el~~A~rk~Glk~G~Y~S~---~DW 153 (384)
T smart00812 80 KFDPEEW---ADLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDTGPKRDLVGELADAVRKRGLKFGLYHSL---FDW 153 (384)
T ss_pred hCCHHHH---HHHHHHcCCCeEEeeeeecCCccccCCCCCCCcccCCCCCcchHHHHHHHHHHcCCeEEEEcCH---HHh
Confidence 3455555 567889999866421 1244332211111111 3346778899999999987664332 367
Q ss_pred CCCCCCceecccCCcccccCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeecccccccchhcccCcchHHHHHHHH
Q 037832 126 NFGAFPAWLKFIPGMEFRIDNQPFELEMQKWVTKIVDMLKAEKLFETQGGPIILSQIENEFELVEWNLGDRARVYGQWAA 205 (711)
Q Consensus 126 ~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~ 205 (711)
.. |.|....+.-..+.+.+.|.++++.|+.+|.+.+.++ ||-|+|- +-..+.. ...--++.|.
T Consensus 154 ~~---p~y~~~~~~~~~~~~~~~~~~y~~~~~~Ql~ELit~Y-------gpd~lWf-D~~~~~~------~~~~~~~~l~ 216 (384)
T smart00812 154 FN---PLYAGPTSSDEDPDNWPRFQEFVDDWLPQLRELVTRY-------KPDLLWF-DGGWEAP------DDYWRSKEFL 216 (384)
T ss_pred CC---CccccccccccccccchhHHHHHHHHHHHHHHHHhcC-------CCceEEE-eCCCCCc------cchhcHHHHH
Confidence 53 5543221111223456788888888889988888733 2344442 1111110 0101145566
Q ss_pred HHHHhcCCcc-ceEecCCCCCCcccccCCCCCc--c-CCCCCC-CCCCCccccc-cccccccccCC-CCCcCCHHHHHHH
Q 037832 206 HMAIGLNITV-PWIMCKQANAPDPIIDTCNDFY--C-DWFSPN-KDYKPKMWTE-NWTAWVQQFGT-PPLYRPHEDLAYS 278 (711)
Q Consensus 206 ~~~~~~g~~v-p~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~-~p~~P~~~~E-~~~Gwf~~wG~-~~~~~~~~~~~~~ 278 (711)
++++++..+. -++.++... . .... .+.+ + +...+. ....|.-..- .-.+|+=+-++ ....++++++...
T Consensus 217 ~~~~~~qP~~~~vvvn~R~~-~--~~~~-~g~~~~~~e~~~p~~~~~~pwE~~~ti~~sWgy~~~~~~~~~ks~~~li~~ 292 (384)
T smart00812 217 AWLYNLSPVKDTVVVNDRWG-G--TGCK-HGGFYTDEERGAPGKLLPHPWETCTTIGKSWGYRRNESDSDYKSPKELIRD 292 (384)
T ss_pred HHHHHhCCCCceEEEEcccc-c--cCCC-CCCcccCcccCCCCCCCCCCcccccccCCCCCcCCCCCcccCCCHHHHHHH
Confidence 6676665543 112222211 0 0000 0100 1 111100 0111211000 00234433333 2335789999999
Q ss_pred HHHHHHhCCcc-eeeeEeeccCCCCCCCCCCccccccCCCCCCCCCCCCCchHHHHHHHHHHHhhhCCCCCC
Q 037832 279 VLKFIQTGGSM-NNYYMYHGGTNFDRTNGAFVATSYDYDGVIDEYGLPSEPKWGHLSELHKVIKTCEPTILN 349 (711)
Q Consensus 279 ~~~~l~~g~s~-~n~YM~hGGTNfG~~~g~~~~TSYDYdApL~E~G~~~tpKy~~lr~l~~~i~~~~~~l~~ 349 (711)
+.+...+|+++ +|. +-+.+|.+-...-..|+++..-++...+++-.
T Consensus 293 l~~~Vsk~GnlLLNV-------------------------gP~~dG~ip~~~~~~L~~iG~Wl~~ngeaIy~ 339 (384)
T smart00812 293 LVDIVSKGGNLLLNV-------------------------GPKADGTIPEEEEERLLEIGKWLKVNGEAIYG 339 (384)
T ss_pred HhhhcCCCceEEEcc-------------------------CCCCCCCCCHHHHHHHHHHHHHHHhCCceeec
Confidence 99999999884 222 33467888556667888998888876665443
No 56
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=89.92 E-value=6.2 Score=47.84 Aligned_cols=61 Identities=23% Similarity=0.203 Sum_probs=43.7
Q ss_pred ccHHHHHHHHHHCCCCEEEEc-cc-------CCCCCC---CCceeeeecchhHHHHHHHHHHcCCEEEeecCc
Q 037832 58 EMWPDLLKKAKDGGLDIVDTY-VF-------WNGHEP---TRGKFYFEGRYDLVRFIKLAQQAGLYVTLRIGP 119 (711)
Q Consensus 58 ~~W~~~l~~~ka~G~N~V~~y-v~-------Wn~hEp---~~G~~df~g~~dl~~fl~~a~~~gL~vilr~GP 119 (711)
+.+++.|..+|++|+|+|++- |+ |..+-. .+ .-.|....+|.+|++.|+++||.|||..=+
T Consensus 251 ~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~-~~~~Gtp~dlk~LVd~aH~~GI~VilDvV~ 322 (758)
T PLN02447 251 EFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAV-SSRSGTPEDLKYLIDKAHSLGLRVLMDVVH 322 (758)
T ss_pred HHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCccc-ccccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 347888999999999999963 32 332211 01 113555679999999999999999988533
No 57
>PRK14706 glycogen branching enzyme; Provisional
Probab=89.82 E-value=6.5 Score=47.03 Aligned_cols=51 Identities=20% Similarity=0.178 Sum_probs=36.5
Q ss_pred HHHHHHCCCCEEEE-ccc-------CCC-----CCCCCceeeeecchhHHHHHHHHHHcCCEEEeec
Q 037832 64 LKKAKDGGLDIVDT-YVF-------WNG-----HEPTRGKFYFEGRYDLVRFIKLAQQAGLYVTLRI 117 (711)
Q Consensus 64 l~~~ka~G~N~V~~-yv~-------Wn~-----hEp~~G~~df~g~~dl~~fl~~a~~~gL~vilr~ 117 (711)
+.-+|++|+|+|+. +|. |.. ..|.+ .|....++.+|++.|+++||.|||..
T Consensus 174 ~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~---~~g~~~~~~~lv~~~H~~gi~VilD~ 237 (639)
T PRK14706 174 GEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTS---RLGTPEDFKYLVNHLHGLGIGVILDW 237 (639)
T ss_pred HHHHHHcCCCEEEccchhcCCCCCCCCcCccccccccc---ccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 36689999999996 332 322 11111 23456799999999999999999874
No 58
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=88.80 E-value=0.58 Score=51.78 Aligned_cols=72 Identities=24% Similarity=0.160 Sum_probs=49.2
Q ss_pred EEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeeecchhHHHHHHHHHHcCCEEEeecCccccc
Q 037832 46 FSGSIHYPRSTPEMWPDLLKKAKDGGLDIVDTYVFWNGHEPTRGKFYFEGRYDLVRFIKLAQQAGLYVTLRIGPYACA 123 (711)
Q Consensus 46 ~sg~~hy~r~~~~~W~~~l~~~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~vilr~GPyica 123 (711)
+|=++++...+.+..+..|++|++.|+..|=| ++|.|+...=+ -...+..+++.|+++||.|++...|=+..
T Consensus 2 lGiSvY~~~~~~~~~~~yi~~a~~~Gf~~iFT----SL~ipe~~~~~--~~~~~~~l~~~a~~~~~~v~~Disp~~l~ 73 (357)
T PF05913_consen 2 LGISVYPGQSSFEENKAYIEKAAKYGFKRIFT----SLHIPEDDPED--YLERLKELLKLAKELGMEVIADISPKVLK 73 (357)
T ss_dssp EEEEE-CCCS-HHHHHHHHHHHHCTTEEEEEE----EE-----------HHHHHHHHHHHHHHCT-EEEEEE-CCHHH
T ss_pred cEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEC----CCCcCCCCHHH--HHHHHHHHHHHHHHCCCEEEEECCHHHHH
Confidence 56677777778889999999999999988877 99999963311 12478899999999999999999875443
No 59
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=88.70 E-value=5.4 Score=42.14 Aligned_cols=131 Identities=18% Similarity=0.244 Sum_probs=76.3
Q ss_pred cccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeeecchhHHHHHHHHHHcCCEEE-eecCcccccccCCCCCCceec
Q 037832 57 PEMWPDLLKKAKDGGLDIVDTYVFWNGHEPTRGKFYFEGRYDLVRFIKLAQQAGLYVT-LRIGPYACAEWNFGAFPAWLK 135 (711)
Q Consensus 57 ~~~W~~~l~~~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~vi-lr~GPyicaEw~~GG~P~WL~ 135 (711)
..-|++.|+.++++|++.|++.+. .. ...+...+++ ...+.++.++++++||.|. +.+++ .+.+|
T Consensus 15 ~~~~~e~l~~~~~~G~~~VEl~~~-~~-~~~~~~~~~~-~~~~~~~~~~l~~~gl~i~~~~~~~-------~~~~~---- 80 (279)
T TIGR00542 15 GECWLERLQLAKTCGFDFVEMSVD-ET-DDRLSRLDWS-REQRLALVNAIIETGVRIPSMCLSA-------HRRFP---- 80 (279)
T ss_pred CCCHHHHHHHHHHcCCCEEEEecC-Cc-cchhhccCCC-HHHHHHHHHHHHHcCCCceeeecCC-------CccCc----
Confidence 466999999999999999999432 22 2223344444 2478899999999999975 44431 01111
Q ss_pred ccCCcccccCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeecccccccchhcccCc---chHHHHHHHHHHHHhcC
Q 037832 136 FIPGMEFRIDNQPFELEMQKWVTKIVDMLKAEKLFETQGGPIILSQIENEFELVEWNLGD---RARVYGQWAAHMAIGLN 212 (711)
Q Consensus 136 ~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~---~~~~y~~~l~~~~~~~g 212 (711)
+-..|+.-+++..+.+++.++..+ .+ |.++|.+- ..++.. .....+ .-.+.++.+.+.+++.|
T Consensus 81 ------l~~~~~~~r~~~~~~~~~~i~~a~--~l----G~~~v~~~-~~~~~~-~~~~~~~~~~~~~~l~~l~~~A~~~G 146 (279)
T TIGR00542 81 ------LGSKDKAVRQQGLEIMEKAIQLAR--DL----GIRTIQLA-GYDVYY-EEHDEETRRRFREGLKEAVELAARAQ 146 (279)
T ss_pred ------CCCcCHHHHHHHHHHHHHHHHHHH--Hh----CCCEEEec-Cccccc-CcCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 112356666666677777777776 33 45666442 111100 000000 12245667777787778
Q ss_pred Ccc
Q 037832 213 ITV 215 (711)
Q Consensus 213 ~~v 215 (711)
+.+
T Consensus 147 v~l 149 (279)
T TIGR00542 147 VTL 149 (279)
T ss_pred CEE
Confidence 765
No 60
>PRK12568 glycogen branching enzyme; Provisional
Probab=88.45 E-value=10 Score=45.92 Aligned_cols=59 Identities=17% Similarity=0.262 Sum_probs=41.7
Q ss_pred HHHHHHHHCCCCEEEE-ccc-------CCC-----CCCCCceeeeecchhHHHHHHHHHHcCCEEEeecCccccc
Q 037832 62 DLLKKAKDGGLDIVDT-YVF-------WNG-----HEPTRGKFYFEGRYDLVRFIKLAQQAGLYVTLRIGPYACA 123 (711)
Q Consensus 62 ~~l~~~ka~G~N~V~~-yv~-------Wn~-----hEp~~G~~df~g~~dl~~fl~~a~~~gL~vilr~GPyica 123 (711)
+.|.-+|++|+|+|+. +|+ |.. ..|.+ .|....++.+|++.|+++||.|||..=|-=|+
T Consensus 274 ~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~---~~G~~~dfk~lV~~~H~~Gi~VIlD~V~nH~~ 345 (730)
T PRK12568 274 QLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTA---RHGSPDGFAQFVDACHRAGIGVILDWVSAHFP 345 (730)
T ss_pred HHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCc---ccCCHHHHHHHHHHHHHCCCEEEEEeccccCC
Confidence 3467889999999996 443 432 12222 35566799999999999999999985443333
No 61
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.76 E-value=2.5 Score=47.65 Aligned_cols=122 Identities=24% Similarity=0.293 Sum_probs=78.6
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcc-------------cCCCCCCCCceee-eecchhHHHHHHHHHHcCCEEEeecCccc
Q 037832 56 TPEMWPDLLKKAKDGGLDIVDTYV-------------FWNGHEPTRGKFY-FEGRYDLVRFIKLAQQAGLYVTLRIGPYA 121 (711)
Q Consensus 56 ~~~~W~~~l~~~ka~G~N~V~~yv-------------~Wn~hEp~~G~~d-f~g~~dl~~fl~~a~~~gL~vilr~GPyi 121 (711)
.+..-.+.|.+++++|+|||-.-| +|...- ||+.- =.|..-|...|++|++.||.|+.+.-||.
T Consensus 62 ~~~el~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~--~~~~~~~~g~DpLa~~I~~AHkr~l~v~aWf~~~~ 139 (418)
T COG1649 62 QRQELKDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGL--PGVLGVDPGYDPLAFVIAEAHKRGLEVHAWFNPYR 139 (418)
T ss_pred cHHHHHHHHHHHHHcCCceeEEEEecCccccccccccccccCc--CcccCCCCCCChHHHHHHHHHhcCCeeeechhhcc
Confidence 566677999999999999997433 354433 33321 12344788889999999999999988887
Q ss_pred ccccCCCC---CCceeccc-CCcc-cccCC-------hhHHHHHHHHHHH-HHHHHHhcccccccCCceEeeccccccc
Q 037832 122 CAEWNFGA---FPAWLKFI-PGME-FRIDN-------QPFELEMQKWVTK-IVDMLKAEKLFETQGGPIILSQIENEFE 187 (711)
Q Consensus 122 caEw~~GG---~P~WL~~~-p~~~-~R~~d-------~~y~~~~~~~~~~-l~~~l~~~~~~~~~gGpII~~QiENEyg 187 (711)
-|--..-. .|.|+... |+.+ .|... .+...+++.|+.. ++++++++ .|=++|.+-=++
T Consensus 140 ~a~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv~evV~~Y--------dvDGIQfDd~fy 210 (418)
T COG1649 140 MAPPTSPLTKRHPHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEVQDFITSLVVEVVRNY--------DVDGIQFDDYFY 210 (418)
T ss_pred cCCCCChhHhhCCCCcccCCCCeEEEecCCceeeeEeCCCChHHHHHHHHHHHHHHhCC--------CCCceecceeec
Confidence 66422211 36666543 3322 22221 2455788888888 66666643 567788765554
No 62
>PRK14705 glycogen branching enzyme; Provisional
Probab=86.40 E-value=11 Score=48.15 Aligned_cols=52 Identities=27% Similarity=0.280 Sum_probs=38.9
Q ss_pred HHHHHHHCCCCEEEE-ccc-------CCC-----CCCCCceeeeecchhHHHHHHHHHHcCCEEEeec
Q 037832 63 LLKKAKDGGLDIVDT-YVF-------WNG-----HEPTRGKFYFEGRYDLVRFIKLAQQAGLYVTLRI 117 (711)
Q Consensus 63 ~l~~~ka~G~N~V~~-yv~-------Wn~-----hEp~~G~~df~g~~dl~~fl~~a~~~gL~vilr~ 117 (711)
.|.-+|++|+|+|+. +|+ |.+ ..|.+ .|.+..|+.+|++.|+++||.|||..
T Consensus 771 lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~---ryGt~~dfk~lVd~~H~~GI~VILD~ 835 (1224)
T PRK14705 771 LVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTS---RFGHPDEFRFLVDSLHQAGIGVLLDW 835 (1224)
T ss_pred HHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCc---ccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 368899999999996 453 432 11121 35566799999999999999999884
No 63
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=86.10 E-value=2 Score=49.63 Aligned_cols=68 Identities=21% Similarity=0.297 Sum_probs=42.5
Q ss_pred EEeeCCCCCcccHHHHHHHHH-HCCCCEEEEc-cc---CCCC-C-CCCc--eeeeecchhHHHHHHHHHHcCCEEEeecC
Q 037832 48 GSIHYPRSTPEMWPDLLKKAK-DGGLDIVDTY-VF---WNGH-E-PTRG--KFYFEGRYDLVRFIKLAQQAGLYVTLRIG 118 (711)
Q Consensus 48 g~~hy~r~~~~~W~~~l~~~k-a~G~N~V~~y-v~---Wn~h-E-p~~G--~~df~g~~dl~~fl~~a~~~gL~vilr~G 118 (711)
|+-|....-++.|+..|+.++ +.||..||+. +| .... | ...| .|||+ .||.++|...+.||+-.+..|
T Consensus 29 ~~g~a~~~l~~~~q~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Ynf~---~lD~i~D~l~~~g~~P~vel~ 105 (486)
T PF01229_consen 29 GSGRANLLLRADWQEQLRELQEELGFRYVRFHGLFSDDMMVYSESDEDGIPPYNFT---YLDQILDFLLENGLKPFVELG 105 (486)
T ss_dssp EES-GGGGGBHHHHHHHHHHHCCS--SEEEES-TTSTTTT-EEEEETTEEEEE--H---HHHHHHHHHHHCT-EEEEEE-
T ss_pred CCCchHHHhhHHHHHHHHHHHhccCceEEEEEeeccCchhhccccccCCCCcCChH---HHHHHHHHHHHcCCEEEEEEE
Confidence 444444556788999999887 7799999983 22 1111 1 1223 39999 899999999999999877765
No 64
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=85.81 E-value=9.5 Score=40.09 Aligned_cols=131 Identities=16% Similarity=0.192 Sum_probs=73.2
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeeecchhHHHHHHHHHHcCCEEE-eecCcccccccCCCCCCceecc
Q 037832 58 EMWPDLLKKAKDGGLDIVDTYVFWNGHEPTRGKFYFEGRYDLVRFIKLAQQAGLYVT-LRIGPYACAEWNFGAFPAWLKF 136 (711)
Q Consensus 58 ~~W~~~l~~~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~vi-lr~GPyicaEw~~GG~P~WL~~ 136 (711)
-.|++.++.++++|+..|++.+. ..|+ .....+|+ ..++.++.++++++||.|. +.++.+ + .+
T Consensus 16 ~~~~e~~~~~~~~G~~~iEl~~~-~~~~-~~~~~~~~-~~~~~~l~~~l~~~Gl~i~~~~~~~~----~---~~------ 79 (284)
T PRK13210 16 LSWEERLVFAKELGFDFVEMSVD-ESDE-RLARLDWS-KEERLSLVKAIYETGVRIPSMCLSGH----R---RF------ 79 (284)
T ss_pred CCHHHHHHHHHHcCCCeEEEecC-Cccc-ccccccCC-HHHHHHHHHHHHHcCCCceEEecccc----c---Cc------
Confidence 36999999999999999999532 1121 01112333 3478899999999999875 333210 0 00
Q ss_pred cCCcccccCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeecccccccchh--cccCcchHHHHHHHHHHHHhcCCc
Q 037832 137 IPGMEFRIDNQPFELEMQKWVTKIVDMLKAEKLFETQGGPIILSQIENEFELVE--WNLGDRARVYGQWAAHMAIGLNIT 214 (711)
Q Consensus 137 ~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~--~~~~~~~~~y~~~l~~~~~~~g~~ 214 (711)
.+.+.|+.-+++..+.++++++.-+ .+ |.+.|.+---..+.... ..+ ..-.+.++.+.+++++.|+.
T Consensus 80 ----~~~~~d~~~r~~~~~~~~~~i~~a~--~l----G~~~v~~~~~~~~~~~~~~~~~-~~~~~~l~~l~~~a~~~gv~ 148 (284)
T PRK13210 80 ----PFGSRDPATRERALEIMKKAIRLAQ--DL----GIRTIQLAGYDVYYEEKSEETR-QRFIEGLAWAVEQAAAAQVM 148 (284)
T ss_pred ----CCCCCCHHHHHHHHHHHHHHHHHHH--Hh----CCCEEEECCcccccccccHHHH-HHHHHHHHHHHHHHHHhCCE
Confidence 1223466555666666666666666 22 44555432100000000 000 12234677788888888876
Q ss_pred c
Q 037832 215 V 215 (711)
Q Consensus 215 v 215 (711)
+
T Consensus 149 l 149 (284)
T PRK13210 149 L 149 (284)
T ss_pred E
Confidence 5
No 65
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=85.79 E-value=7.6 Score=40.99 Aligned_cols=98 Identities=14% Similarity=0.192 Sum_probs=58.6
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeeecchhHHHHHHHHHHc-CCEEEeecCcccccccCCCCCCceecc
Q 037832 58 EMWPDLLKKAKDGGLDIVDTYVFWNGHEPTRGKFYFEGRYDLVRFIKLAQQA-GLYVTLRIGPYACAEWNFGAFPAWLKF 136 (711)
Q Consensus 58 ~~W~~~l~~~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~-gL~vilr~GPyicaEw~~GG~P~WL~~ 136 (711)
.-|++.|+.+|++|++.|++-+........+ .....+++++.++++++ ++.+.+- +||. +
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~i~~~-~~~~------------~-- 70 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWLSR----PLKKERAEKFKAIAEEGPSICLSVH-APYL------------I-- 70 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccCCC----CCCHHHHHHHHHHHHHcCCCcEEEE-cCce------------e--
Confidence 6799999999999999999965432111111 11345899999999999 7666543 2331 0
Q ss_pred cCCcccccCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeecccc
Q 037832 137 IPGMEFRIDNQPFELEMQKWVTKIVDMLKAEKLFETQGGPIILSQIEN 184 (711)
Q Consensus 137 ~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiEN 184 (711)
.+...++.-+++....+++.++..+ .+ |-+.|.+....
T Consensus 71 ----~~~~~~~~~r~~~~~~~~~~i~~A~--~l----G~~~v~~~~g~ 108 (279)
T cd00019 71 ----NLASPDKEKREKSIERLKDEIERCE--EL----GIRLLVFHPGS 108 (279)
T ss_pred ----ccCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEECCCC
Confidence 1222344445555555566566555 22 34556555443
No 66
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=85.07 E-value=2.5 Score=41.77 Aligned_cols=124 Identities=19% Similarity=0.157 Sum_probs=72.7
Q ss_pred HHHHHHCCCCEEEEcccCCCCCCCCceeeeecchhHHHHHHHHHHcCCEEEeecCcccccccCCCCCCceecccCCcccc
Q 037832 64 LKKAKDGGLDIVDTYVFWNGHEPTRGKFYFEGRYDLVRFIKLAQQAGLYVTLRIGPYACAEWNFGAFPAWLKFIPGMEFR 143 (711)
Q Consensus 64 l~~~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~vilr~GPyicaEw~~GG~P~WL~~~p~~~~R 143 (711)
|+.++++|+..|+............ ...++++.++++++||.+..--.+. .+.. +....+
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~~-------~~~~~~~~~~~~~~gl~i~~~~~~~---~~~~----------~~~~~~ 60 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDEK-------DDEAEELRRLLEDYGLKIASLHPPT---NFWS----------PDEENG 60 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTHH-------HHHHHHHHHHHHHTTCEEEEEEEEE---SSSC----------TGTTST
T ss_pred ChHHHHcCCCEEEEecCCCcccccc-------hHHHHHHHHHHHHcCCeEEEEeccc---cccc----------cccccc
Confidence 6789999999999965533322211 2378999999999999965321111 0110 111123
Q ss_pred cCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeeccc--ccccch--hcccCcchHHHHHHHHHHHHhcCCcc
Q 037832 144 IDNQPFELEMQKWVTKIVDMLKAEKLFETQGGPIILSQIE--NEFELV--EWNLGDRARVYGQWAAHMAIGLNITV 215 (711)
Q Consensus 144 ~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiE--NEyg~~--~~~~~~~~~~y~~~l~~~~~~~g~~v 215 (711)
+.+++ ++...+.+.+.++..+ .+ |...|.+..- +..... ...+ +.-.+.++.+.+.+++.|+.+
T Consensus 61 ~~~~~-r~~~~~~~~~~i~~a~--~l----g~~~i~~~~g~~~~~~~~~~~~~~-~~~~~~l~~l~~~a~~~gv~i 128 (213)
T PF01261_consen 61 SANDE-REEALEYLKKAIDLAK--RL----GAKYIVVHSGRYPSGPEDDTEENW-ERLAENLRELAEIAEEYGVRI 128 (213)
T ss_dssp TSSSH-HHHHHHHHHHHHHHHH--HH----TBSEEEEECTTESSSTTSSHHHHH-HHHHHHHHHHHHHHHHHTSEE
T ss_pred Ccchh-hHHHHHHHHHHHHHHH--Hh----CCCceeecCcccccccCCCHHHHH-HHHHHHHHHHHhhhhhhcceE
Confidence 34444 7777778888888877 33 5566776644 222111 0001 123456777888888888654
No 67
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=84.71 E-value=1.5 Score=50.47 Aligned_cols=61 Identities=13% Similarity=0.194 Sum_probs=43.5
Q ss_pred cccHH---HHHHHHHHCCCCEEEE-cccCCC-----CCCCCc-ee-------------eeecchhHHHHHHHHHHcCCEE
Q 037832 57 PEMWP---DLLKKAKDGGLDIVDT-YVFWNG-----HEPTRG-KF-------------YFEGRYDLVRFIKLAQQAGLYV 113 (711)
Q Consensus 57 ~~~W~---~~l~~~ka~G~N~V~~-yv~Wn~-----hEp~~G-~~-------------df~g~~dl~~fl~~a~~~gL~v 113 (711)
.+.|. +.|.-+|++|+++|-+ +++-+. |--.+- -| .|....+|.++++.|++.||+|
T Consensus 18 ~~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~v 97 (479)
T PRK09441 18 GKLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKV 97 (479)
T ss_pred ccHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEE
Confidence 34574 6788899999999997 455432 222111 12 3445679999999999999999
Q ss_pred Eeec
Q 037832 114 TLRI 117 (711)
Q Consensus 114 ilr~ 117 (711)
|+..
T Consensus 98 i~D~ 101 (479)
T PRK09441 98 YADV 101 (479)
T ss_pred EEEE
Confidence 9885
No 68
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=83.57 E-value=17 Score=40.68 Aligned_cols=90 Identities=16% Similarity=0.129 Sum_probs=53.2
Q ss_pred cccHHHHHHHHHHCCCCEEEEc----ccCCCCCCCCceeeeecchhHHHHHHHHHHcCCEEE-eecCcccccccCCCCCC
Q 037832 57 PEMWPDLLKKAKDGGLDIVDTY----VFWNGHEPTRGKFYFEGRYDLVRFIKLAQQAGLYVT-LRIGPYACAEWNFGAFP 131 (711)
Q Consensus 57 ~~~W~~~l~~~ka~G~N~V~~y----v~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~vi-lr~GPyicaEw~~GG~P 131 (711)
+....+++++++++|+..|+.. ++|..-+.+. ..++.++-++++++||.|. +-++-+....|..|+
T Consensus 31 ~~~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e~-------~~~~~~lk~~L~~~GL~v~~v~~nl~~~~~~~~g~-- 101 (382)
T TIGR02631 31 ALDPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQER-------DQIVRRFKKALDETGLKVPMVTTNLFSHPVFKDGG-- 101 (382)
T ss_pred CcCHHHHHHHHHHhCCCEEEecccccCCCCCChhHH-------HHHHHHHHHHHHHhCCeEEEeeccccCCccccCCC--
Confidence 3456789999999999999974 2222211111 1357889999999999975 343311111122222
Q ss_pred ceecccCCcccccCChhHHHHHHHHHHHHHHHHH
Q 037832 132 AWLKFIPGMEFRIDNQPFELEMQKWVTKIVDMLK 165 (711)
Q Consensus 132 ~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~ 165 (711)
+-+.|+..+++.-+.+++.++.-+
T Consensus 102 ----------las~d~~vR~~ai~~~kraId~A~ 125 (382)
T TIGR02631 102 ----------FTSNDRSVRRYALRKVLRNMDLGA 125 (382)
T ss_pred ----------CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 334567666665555566555555
No 69
>PRK12313 glycogen branching enzyme; Provisional
Probab=83.39 E-value=2 Score=51.21 Aligned_cols=51 Identities=22% Similarity=0.346 Sum_probs=38.3
Q ss_pred HHHHHHCCCCEEEE-ccc-------CCC-----CCCCCceeeeecchhHHHHHHHHHHcCCEEEeec
Q 037832 64 LKKAKDGGLDIVDT-YVF-------WNG-----HEPTRGKFYFEGRYDLVRFIKLAQQAGLYVTLRI 117 (711)
Q Consensus 64 l~~~ka~G~N~V~~-yv~-------Wn~-----hEp~~G~~df~g~~dl~~fl~~a~~~gL~vilr~ 117 (711)
|.-+|++|+|+|.. +|+ |.. ..+.+ .|.+..+|.+|++.|+++||.|||..
T Consensus 177 l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~---~~Gt~~d~k~lv~~~H~~Gi~VilD~ 240 (633)
T PRK12313 177 IPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTS---RYGTPEDFMYLVDALHQNGIGVILDW 240 (633)
T ss_pred HHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCC---CCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 58899999999996 453 321 11111 35567799999999999999999984
No 70
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=82.82 E-value=19 Score=37.54 Aligned_cols=42 Identities=24% Similarity=0.313 Sum_probs=34.5
Q ss_pred HHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeeecchhHHHHHHHHHHcCCEEEe
Q 037832 60 WPDLLKKAKDGGLDIVDTYVFWNGHEPTRGKFYFEGRYDLVRFIKLAQQAGLYVTL 115 (711)
Q Consensus 60 W~~~l~~~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~vil 115 (711)
++++|++++++|++.|++.. |. ..+++++.++++++||.+..
T Consensus 17 l~~~l~~~a~~Gf~~VEl~~------~~--------~~~~~~~~~~l~~~gl~~~~ 58 (258)
T PRK09997 17 FLARFEKAAQCGFRGVEFMF------PY--------DYDIEELKQVLASNKLEHTL 58 (258)
T ss_pred HHHHHHHHHHhCCCEEEEcC------CC--------CCCHHHHHHHHHHcCCcEEE
Confidence 78899999999999999831 11 13789999999999999864
No 71
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=82.51 E-value=1.3 Score=46.59 Aligned_cols=57 Identities=19% Similarity=0.212 Sum_probs=39.5
Q ss_pred HHHHHHHHHCCCCEEEEcccCCCCCCCC--ceee-------eecchhHHHHHHHHHHcCCEEEeec
Q 037832 61 PDLLKKAKDGGLDIVDTYVFWNGHEPTR--GKFY-------FEGRYDLVRFIKLAQQAGLYVTLRI 117 (711)
Q Consensus 61 ~~~l~~~ka~G~N~V~~yv~Wn~hEp~~--G~~d-------f~g~~dl~~fl~~a~~~gL~vilr~ 117 (711)
.+.|.-+|++|+|+|.+-=++.....-- ..-| |.+..++.++++.|+++||+|||..
T Consensus 7 ~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~ 72 (316)
T PF00128_consen 7 IDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDV 72 (316)
T ss_dssp HHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEee
Confidence 4678899999999999843332211111 1122 3345799999999999999999885
No 72
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=82.02 E-value=2.3 Score=49.74 Aligned_cols=53 Identities=26% Similarity=0.385 Sum_probs=40.0
Q ss_pred HHHHHHHHCCCCEEEE-ccc-------CCC-----CCCCCceeeeecchhHHHHHHHHHHcCCEEEeec
Q 037832 62 DLLKKAKDGGLDIVDT-YVF-------WNG-----HEPTRGKFYFEGRYDLVRFIKLAQQAGLYVTLRI 117 (711)
Q Consensus 62 ~~l~~~ka~G~N~V~~-yv~-------Wn~-----hEp~~G~~df~g~~dl~~fl~~a~~~gL~vilr~ 117 (711)
++|.-+|++|+|+|.+ +|+ |.+ ..+.+ .|.+..+|.+|++.|+++||.|||..
T Consensus 115 ~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~---~~G~~~e~k~lV~~aH~~Gi~VilD~ 180 (542)
T TIGR02402 115 EKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHN---AYGGPDDLKALVDAAHGLGLGVILDV 180 (542)
T ss_pred HhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCcccccc---ccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 5789999999999996 452 322 22222 35566799999999999999999884
No 73
>PRK01060 endonuclease IV; Provisional
Probab=81.70 E-value=25 Score=36.96 Aligned_cols=93 Identities=11% Similarity=0.184 Sum_probs=59.1
Q ss_pred HHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeeecchhHHHHHHHHHHcCCEE---EeecCcccccccCCCCCCceecc
Q 037832 60 WPDLLKKAKDGGLDIVDTYVFWNGHEPTRGKFYFEGRYDLVRFIKLAQQAGLYV---TLRIGPYACAEWNFGAFPAWLKF 136 (711)
Q Consensus 60 W~~~l~~~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~v---ilr~GPyicaEw~~GG~P~WL~~ 136 (711)
+++.++.++++|++.|++.+.-. +.-.++.++ ..++.++-++++++||.+ .+ -+||. +
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~~p-~~~~~~~~~---~~~~~~lk~~~~~~gl~~~~~~~-h~~~~------------~-- 74 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTGNP-QQWKRKPLE---ELNIEAFKAACEKYGISPEDILV-HAPYL------------I-- 74 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECCCC-CCCcCCCCC---HHHHHHHHHHHHHcCCCCCceEE-ecceE------------e--
Confidence 88999999999999999954311 111122222 226888999999999973 32 23332 1
Q ss_pred cCCcccccCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeec
Q 037832 137 IPGMEFRIDNQPFELEMQKWVTKIVDMLKAEKLFETQGGPIILSQ 181 (711)
Q Consensus 137 ~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Q 181 (711)
.+-+.|+..+++..+.+++.++.-+ .+ |.++|.+.
T Consensus 75 ----nl~~~d~~~r~~s~~~~~~~i~~A~--~l----ga~~vv~h 109 (281)
T PRK01060 75 ----NLGNPNKEILEKSRDFLIQEIERCA--AL----GAKLLVFH 109 (281)
T ss_pred ----cCCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEEc
Confidence 2334577777777777777777766 33 44555544
No 74
>PRK09989 hypothetical protein; Provisional
Probab=80.73 E-value=23 Score=37.00 Aligned_cols=43 Identities=21% Similarity=0.361 Sum_probs=34.5
Q ss_pred cHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeeecchhHHHHHHHHHHcCCEEEe
Q 037832 59 MWPDLLKKAKDGGLDIVDTYVFWNGHEPTRGKFYFEGRYDLVRFIKLAQQAGLYVTL 115 (711)
Q Consensus 59 ~W~~~l~~~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~vil 115 (711)
-.+++|++++++|+..|++..+|. .+.+++.++++++||.|..
T Consensus 16 ~l~~~l~~~~~~Gfd~VEl~~~~~--------------~~~~~~~~~l~~~Gl~v~~ 58 (258)
T PRK09989 16 PFIERFAAARKAGFDAVEFLFPYD--------------YSTLQIQKQLEQNHLTLAL 58 (258)
T ss_pred CHHHHHHHHHHcCCCEEEECCccc--------------CCHHHHHHHHHHcCCcEEE
Confidence 377999999999999999944332 2467888899999999874
No 75
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=80.40 E-value=31 Score=36.09 Aligned_cols=129 Identities=12% Similarity=0.070 Sum_probs=68.5
Q ss_pred cHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeeecchhHHHHHHHHHHcCCEEEe-ecCcccccccCCCCCCceeccc
Q 037832 59 MWPDLLKKAKDGGLDIVDTYVFWNGHEPTRGKFYFEGRYDLVRFIKLAQQAGLYVTL-RIGPYACAEWNFGAFPAWLKFI 137 (711)
Q Consensus 59 ~W~~~l~~~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~vil-r~GPyicaEw~~GG~P~WL~~~ 137 (711)
-+++.|+.++++|++.|++..-.. |+-.+ +++ ..+++++-++++++||.|.. .++ .+++|..+.
T Consensus 14 ~l~~~l~~~~~~G~~~vEl~~~~~-~~~~~---~~~-~~~~~~l~~~~~~~gl~v~s~~~~--------~~~~~~~~~-- 78 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEIWGGRP-HAFAP---DLK-AGGIKQIKALAQTYQMPIIGYTPE--------TNGYPYNMM-- 78 (275)
T ss_pred CHHHHHHHHHHcCCCEEEEccCCc-ccccc---ccC-chHHHHHHHHHHHcCCeEEEecCc--------ccCcCcccc--
Confidence 589999999999999999832111 11011 121 23688899999999999753 321 123333221
Q ss_pred CCcccccCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeeccccc-cc-chhcccCcchHHHHHHHHHHHHhcCCcc
Q 037832 138 PGMEFRIDNQPFELEMQKWVTKIVDMLKAEKLFETQGGPIILSQIENE-FE-LVEWNLGDRARVYGQWAAHMAIGLNITV 215 (711)
Q Consensus 138 p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENE-yg-~~~~~~~~~~~~y~~~l~~~~~~~g~~v 215 (711)
..++.-+++..+.+++.++.-+ .+ |.+.|.+-.-.. +. .....+ +.-.+.++.|.+.+++.|+.+
T Consensus 79 ------~~~~~~r~~~~~~~~~~i~~a~--~l----Ga~~i~~~~~~~~~~~~~~~~~-~~~~~~l~~l~~~a~~~gv~l 145 (275)
T PRK09856 79 ------LGDEHMRRESLDMIKLAMDMAK--EM----NAGYTLISAAHAGYLTPPNVIW-GRLAENLSELCEYAENIGMDL 145 (275)
T ss_pred ------CCCHHHHHHHHHHHHHHHHHHH--Hh----CCCEEEEcCCCCCCCCCHHHHH-HHHHHHHHHHHHHHHHcCCEE
Confidence 1234444444455555555544 22 444544421111 00 000001 122346788888888887754
No 76
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=79.98 E-value=19 Score=37.87 Aligned_cols=130 Identities=18% Similarity=0.236 Sum_probs=72.5
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeeecchhHHHHHHHHHHcCCEEE-eecCcccccccCCCCCCceecc
Q 037832 58 EMWPDLLKKAKDGGLDIVDTYVFWNGHEPTRGKFYFEGRYDLVRFIKLAQQAGLYVT-LRIGPYACAEWNFGAFPAWLKF 136 (711)
Q Consensus 58 ~~W~~~l~~~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~vi-lr~GPyicaEw~~GG~P~WL~~ 136 (711)
.-|++.++.++++|+..|+..+. ..++ ....++++ ...++++.++++++||.|. +..+.. ..++
T Consensus 21 ~~~~e~~~~~~~~G~~~iEl~~~-~~~~-~~~~~~~~-~~~~~~l~~~l~~~gl~i~~~~~~~~-------~~~~----- 85 (283)
T PRK13209 21 ECWLEKLAIAKTAGFDFVEMSVD-ESDE-RLARLDWS-REQRLALVNALVETGFRVNSMCLSAH-------RRFP----- 85 (283)
T ss_pred CCHHHHHHHHHHcCCCeEEEecC-cccc-chhccCCC-HHHHHHHHHHHHHcCCceeEEecccc-------cccC-----
Confidence 35999999999999999999532 1111 01112222 2368899999999999875 333211 0010
Q ss_pred cCCcccccCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeecccccccchhcccC---cchHHHHHHHHHHHHhcCC
Q 037832 137 IPGMEFRIDNQPFELEMQKWVTKIVDMLKAEKLFETQGGPIILSQIENEFELVEWNLG---DRARVYGQWAAHMAIGLNI 213 (711)
Q Consensus 137 ~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~---~~~~~y~~~l~~~~~~~g~ 213 (711)
+-+.|+.-++...+.+++.++..+ .+ |.++|.+.= -+.. ...... ..-.+.++.|.+++++.|+
T Consensus 86 -----~~~~~~~~r~~~~~~~~~~i~~a~--~l----G~~~i~~~~-~~~~-~~~~~~~~~~~~~~~l~~l~~~A~~~GV 152 (283)
T PRK13209 86 -----LGSEDDAVRAQALEIMRKAIQLAQ--DL----GIRVIQLAG-YDVY-YEQANNETRRRFIDGLKESVELASRASV 152 (283)
T ss_pred -----CCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEECC-cccc-ccccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 112455556666667777777666 33 556665420 0000 000000 0113456777888888887
Q ss_pred cc
Q 037832 214 TV 215 (711)
Q Consensus 214 ~v 215 (711)
.+
T Consensus 153 ~i 154 (283)
T PRK13209 153 TL 154 (283)
T ss_pred EE
Confidence 55
No 77
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=79.30 E-value=3.8 Score=44.55 Aligned_cols=74 Identities=20% Similarity=0.130 Sum_probs=59.1
Q ss_pred EEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeeecchhHHHHHHHHHHcCCEEEeecCcccccc
Q 037832 45 LFSGSIHYPRSTPEMWPDLLKKAKDGGLDIVDTYVFWNGHEPTRGKFYFEGRYDLVRFIKLAQQAGLYVTLRIGPYACAE 124 (711)
Q Consensus 45 ~~sg~~hy~r~~~~~W~~~l~~~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~vilr~GPyicaE 124 (711)
.+|=++.+.|.+.+.=...|++|...|+..|=| ++|.|.+..= ..-.-+.++++.|+++||+||+..-|-|.-|
T Consensus 3 ~~GfSifp~~~~~~~~~~Yi~~~~~~Gf~~IFt----sl~~~~~~~~--~~~~~~~ell~~Anklg~~vivDvnPsil~~ 76 (360)
T COG3589 3 MLGFSIFPNRSPKEKDIAYIDRMHKYGFKRIFT----SLLIPEEDAE--LYFHRFKELLKEANKLGLRVIVDVNPSILKE 76 (360)
T ss_pred ceeEEeccCCCcchhHHHHHHHHHHcCccceee----ecccCCchHH--HHHHHHHHHHHHHHhcCcEEEEEcCHHHHhh
Confidence 356678888888888889999999999987777 9999987420 0112678999999999999999998877555
No 78
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=78.15 E-value=3.7 Score=48.60 Aligned_cols=56 Identities=29% Similarity=0.401 Sum_probs=41.4
Q ss_pred ccHHHHHHHHHHCCCCEEEE-ccc-------CCCC-----CCCCceeeeecchhHHHHHHHHHHcCCEEEee
Q 037832 58 EMWPDLLKKAKDGGLDIVDT-YVF-------WNGH-----EPTRGKFYFEGRYDLVRFIKLAQQAGLYVTLR 116 (711)
Q Consensus 58 ~~W~~~l~~~ka~G~N~V~~-yv~-------Wn~h-----Ep~~G~~df~g~~dl~~fl~~a~~~gL~vilr 116 (711)
+.=.+.|.-+|+||+++||. +|. |..- -|+. .|..-.+|.+|||.|+++||-|||.
T Consensus 165 e~a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~g~yAp~s---ryGtPedfk~fVD~aH~~GIgViLD 233 (628)
T COG0296 165 ELAIELLPYLKELGITHIELMPVAEHPGDRSWGYQGTGYYAPTS---RYGTPEDFKALVDAAHQAGIGVILD 233 (628)
T ss_pred HHHHHHhHHHHHhCCCEEEEcccccCCCCCCCCCCcceeccccc---cCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 33467889999999999997 332 5431 1211 2444579999999999999999987
No 79
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=77.88 E-value=21 Score=39.28 Aligned_cols=135 Identities=15% Similarity=0.227 Sum_probs=85.2
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeeecchhHHHHHHHHH---HcCCEEEeecCcccccccCCCCC-
Q 037832 55 STPEMWPDLLKKAKDGGLDIVDTYVFWNGHEPTRGKFYFEGRYDLVRFIKLAQ---QAGLYVTLRIGPYACAEWNFGAF- 130 (711)
Q Consensus 55 ~~~~~W~~~l~~~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~---~~gL~vilr~GPyicaEw~~GG~- 130 (711)
..|+..+..++.+|+.|++.--.|-.|. .|..-|++-++..- +.+|...|+ |.+.--
T Consensus 55 ~~p~v~~~Q~~lA~~~GI~gF~~~~Ywf-----------~gk~lLe~p~~~~l~~~~~d~pFcl~--------WAN~~w~ 115 (345)
T PF14307_consen 55 RDPEVMEKQAELAKEYGIDGFCFYHYWF-----------NGKRLLEKPLENLLASKEPDFPFCLC--------WANENWT 115 (345)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEEeeec-----------CCchHHHHHHHHHHhcCCCCCcEEEE--------ECCChhh
Confidence 4677889999999999999988887774 45567777765543 334544343 433210
Q ss_pred CceecccCCcccccCChhHH--HHHHHHHHHHHHHHHhcccccccCCceEeecccccccchhcccCcchHHHHHHHHHHH
Q 037832 131 PAWLKFIPGMEFRIDNQPFE--LEMQKWVTKIVDMLKAEKLFETQGGPIILSQIENEFELVEWNLGDRARVYGQWAAHMA 208 (711)
Q Consensus 131 P~WL~~~p~~~~R~~d~~y~--~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~ 208 (711)
=.|-.....+.+- ..|. +..++.++.|++.+++..++--+|-||+++=--.++ .+-+++++.+++.+
T Consensus 116 ~~w~g~~~~~l~~---q~y~~~~d~~~~~~~l~~~F~D~rYikVdGKPv~~Iy~p~~~--------pd~~~~~~~wr~~a 184 (345)
T PF14307_consen 116 RRWDGRNNEILIE---QKYSGEDDWKEHFRYLLPYFKDPRYIKVDGKPVFLIYRPGDI--------PDIKEMIERWREEA 184 (345)
T ss_pred hccCCCCcccccc---ccCCchhHHHHHHHHHHHHhCCCCceeECCEEEEEEECcccc--------cCHHHHHHHHHHHH
Confidence 1122222222111 1221 224677788889999866666688999987322111 24578899999999
Q ss_pred HhcCCccceEe
Q 037832 209 IGLNITVPWIM 219 (711)
Q Consensus 209 ~~~g~~vp~~~ 219 (711)
+++|+..+.+.
T Consensus 185 ~~~G~~giyii 195 (345)
T PF14307_consen 185 KEAGLPGIYII 195 (345)
T ss_pred HHcCCCceEEE
Confidence 99999866544
No 80
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=77.66 E-value=7.3 Score=49.87 Aligned_cols=91 Identities=16% Similarity=0.279 Sum_probs=59.5
Q ss_pred CcccHHHHHHHHHHCCCCEEEE-ccc-CC---CCCCCCceee----e----ecchhHHHHHHHHHHc-CCEEEeecCccc
Q 037832 56 TPEMWPDLLKKAKDGGLDIVDT-YVF-WN---GHEPTRGKFY----F----EGRYDLVRFIKLAQQA-GLYVTLRIGPYA 121 (711)
Q Consensus 56 ~~~~W~~~l~~~ka~G~N~V~~-yv~-Wn---~hEp~~G~~d----f----~g~~dl~~fl~~a~~~-gL~vilr~GPyi 121 (711)
+-+.|++.|+.+|++|+|+|.. +++ =. ..=...+.+. | .+..|+.++++.|++. ||++|+..=
T Consensus 130 ~~~~w~~~L~~ik~lGyN~IhftPI~~~G~SnS~Ysi~Dyl~idP~~~~~~~~~~d~~~lV~~~h~~~Gm~~ilDvV--- 206 (1464)
T TIGR01531 130 PLSEWEPRLRVAKEKGYNMIHFTPLQELGGSNSCYSLYDQLQLNQHFKSQKDGKNDVQALVEKLHRDWNVLSITDIV--- 206 (1464)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCccccchhhcChhhcccCCcHHHHHHHHHHHHHhcCCEEEEEee---
Confidence 5577999999999999999986 454 11 1001122222 3 2567899999999995 999998741
Q ss_pred ccccCCCCC-CceecccCCcccccCChhHHHH
Q 037832 122 CAEWNFGAF-PAWLKFIPGMEFRIDNQPFELE 152 (711)
Q Consensus 122 caEw~~GG~-P~WL~~~p~~~~R~~d~~y~~~ 152 (711)
|+.-+. =.||.++|+.-....+.+||+.
T Consensus 207 ---~NHTa~ds~Wl~eHPEa~Yn~~~sP~L~~ 235 (1464)
T TIGR01531 207 ---FNHTANNSPWLLEHPEAAYNCITSPHLRP 235 (1464)
T ss_pred ---ecccccCCHHHHhChHhhcCCCCCchhhh
Confidence 333232 3588888875455555555544
No 81
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=77.48 E-value=44 Score=34.59 Aligned_cols=43 Identities=19% Similarity=0.203 Sum_probs=35.2
Q ss_pred cHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeeecchhHHHHHHHHHHcCCEEEe
Q 037832 59 MWPDLLKKAKDGGLDIVDTYVFWNGHEPTRGKFYFEGRYDLVRFIKLAQQAGLYVTL 115 (711)
Q Consensus 59 ~W~~~l~~~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~vil 115 (711)
-+++.+++++++|++.|+...++ ..++.++.++++++||.|..
T Consensus 15 ~l~e~~~~~~e~G~~~vEl~~~~--------------~~~~~~l~~~l~~~gl~v~~ 57 (254)
T TIGR03234 15 PFLERFAAAAQAGFTGVEYLFPY--------------DWDAEALKARLAAAGLEQVL 57 (254)
T ss_pred CHHHHHHHHHHcCCCEEEecCCc--------------cCCHHHHHHHHHHcCCeEEE
Confidence 48899999999999999985322 12678899999999999863
No 82
>PLN02960 alpha-amylase
Probab=76.72 E-value=4.7 Score=49.37 Aligned_cols=54 Identities=24% Similarity=0.278 Sum_probs=40.2
Q ss_pred HHHHHHHHHCCCCEEEE-ccc-------CCCC-----CCCCceeeeecchhHHHHHHHHHHcCCEEEeec
Q 037832 61 PDLLKKAKDGGLDIVDT-YVF-------WNGH-----EPTRGKFYFEGRYDLVRFIKLAQQAGLYVTLRI 117 (711)
Q Consensus 61 ~~~l~~~ka~G~N~V~~-yv~-------Wn~h-----Ep~~G~~df~g~~dl~~fl~~a~~~gL~vilr~ 117 (711)
++.|.-+|++|+|+|++ +|+ |.+. .|.+ .|....+|.+|++.|+++||.|||..
T Consensus 420 e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~---~yGtp~dfk~LVd~aH~~GI~VILDv 486 (897)
T PLN02960 420 QKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSS---RFGTPDDFKRLVDEAHGLGLLVFLDI 486 (897)
T ss_pred HHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCccc---ccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 35689999999999997 453 4321 1111 34456799999999999999999884
No 83
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=76.00 E-value=4.9 Score=42.20 Aligned_cols=52 Identities=21% Similarity=0.452 Sum_probs=38.9
Q ss_pred cccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeeecchhHHHHHHHHHHcCCEEEeecC
Q 037832 57 PEMWPDLLKKAKDGGLDIVDTYVFWNGHEPTRGKFYFEGRYDLVRFIKLAQQAGLYVTLRIG 118 (711)
Q Consensus 57 ~~~W~~~l~~~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~vilr~G 118 (711)
+...++-|+.+|++||++|++ ..|..+.+ ..+..++|+.|++.|+.|+-..|
T Consensus 83 q~~~~~yl~~~k~lGf~~IEi---------SdGti~l~-~~~r~~~I~~~~~~Gf~v~~EvG 134 (244)
T PF02679_consen 83 QGKFDEYLEECKELGFDAIEI---------SDGTIDLP-EEERLRLIRKAKEEGFKVLSEVG 134 (244)
T ss_dssp TT-HHHHHHHHHHCT-SEEEE-----------SSS----HHHHHHHHHHHCCTTSEEEEEES
T ss_pred cChHHHHHHHHHHcCCCEEEe---------cCCceeCC-HHHHHHHHHHHHHCCCEEeeccc
Confidence 667889999999999999998 34444443 23677999999999999999987
No 84
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=74.87 E-value=4.4 Score=47.46 Aligned_cols=60 Identities=13% Similarity=0.121 Sum_probs=42.9
Q ss_pred ccHHHHHHHHHHCCCCEEEE-cccCCCCCCCCceee----------eecchhHHHHHHHHHHcCCEEEeecCc
Q 037832 58 EMWPDLLKKAKDGGLDIVDT-YVFWNGHEPTRGKFY----------FEGRYDLVRFIKLAQQAGLYVTLRIGP 119 (711)
Q Consensus 58 ~~W~~~l~~~ka~G~N~V~~-yv~Wn~hEp~~G~~d----------f~g~~dl~~fl~~a~~~gL~vilr~GP 119 (711)
.-+.++|.-+|++|+|+|-+ +++-+-.. ...|+ |....+|.++++.|+++||+|||..=|
T Consensus 27 ~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~--~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~v~ 97 (543)
T TIGR02403 27 RGIIEKLDYLKKLGVDYIWLNPFYVSPQK--DNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDMVF 97 (543)
T ss_pred HHHHHhHHHHHHcCCCEEEECCcccCCCC--CCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEECc
Confidence 34668899999999999987 45432111 01222 445679999999999999999988433
No 85
>PF14683 CBM-like: Polysaccharide lyase family 4, domain III; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=74.66 E-value=2 Score=42.45 Aligned_cols=57 Identities=23% Similarity=0.233 Sum_probs=26.9
Q ss_pred CCceEEEEEcCcccceecccccccCCCCCCCcccCCccCcccccCCCCCCceeeeecCCCCccCCCCeeC
Q 037832 642 TMSKGLIWVNGHGVGRYWSASIAYGNCSPHPCYYGGFMNNQKCLSGCGKPSQIWYHVPRSWLKPTGNLLV 711 (711)
Q Consensus 642 g~gKG~vwVNG~nlGRYW~~~~~~g~~G~~~~~~~G~~~~~~~~~~~g~PQqtlYhVP~~~Lk~g~N~lV 711 (711)
.-++=+|.||| ..+..+... . |+.+|.+|++ +-+|..+.--+.||+..|++|.|+|.
T Consensus 91 ~~~~~~V~vNg-~~~~~~~~~--~---~~d~~~~r~g-------~~~G~~~~~~~~ipa~~L~~G~Nti~ 147 (167)
T PF14683_consen 91 AGGRLQVSVNG-WSGPFPSAP--F---GNDNAIYRSG-------IHRGNYRLYEFDIPASLLKAGENTIT 147 (167)
T ss_dssp TT-EEEEEETT-EE----------------S--GGGT----------S---EEEEEE-TTSS-SEEEEEE
T ss_pred CCCCEEEEEcC-ccCCccccc--c---CCCCceeeCc-------eecccEEEEEEEEcHHHEEeccEEEE
Confidence 44667899999 777766311 1 3335556552 22345666667899999999999973
No 86
>PRK10785 maltodextrin glucosidase; Provisional
Probab=72.24 E-value=6.7 Score=46.53 Aligned_cols=57 Identities=21% Similarity=0.242 Sum_probs=41.0
Q ss_pred HHHHHHHHHCCCCEEEE-cccCC--CCCCCCcee-----eeecchhHHHHHHHHHHcCCEEEeec
Q 037832 61 PDLLKKAKDGGLDIVDT-YVFWN--GHEPTRGKF-----YFEGRYDLVRFIKLAQQAGLYVTLRI 117 (711)
Q Consensus 61 ~~~l~~~ka~G~N~V~~-yv~Wn--~hEp~~G~~-----df~g~~dl~~fl~~a~~~gL~vilr~ 117 (711)
.+.|.-+|++|+|+|-+ +||=+ .|---..-| .|.+..+|.++++.|++.||+|||..
T Consensus 182 ~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~ 246 (598)
T PRK10785 182 SEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDG 246 (598)
T ss_pred HHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 46889999999999997 56532 111111111 24556799999999999999999874
No 87
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=71.91 E-value=13 Score=40.71 Aligned_cols=111 Identities=21% Similarity=0.243 Sum_probs=69.2
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcc-------cCCCCCCCCceeeee-c-chhHHHHHHHHHHcCCEEEeecCcccccccC
Q 037832 56 TPEMWPDLLKKAKDGGLDIVDTYV-------FWNGHEPTRGKFYFE-G-RYDLVRFIKLAQQAGLYVTLRIGPYACAEWN 126 (711)
Q Consensus 56 ~~~~W~~~l~~~ka~G~N~V~~yv-------~Wn~hEp~~G~~df~-g-~~dl~~fl~~a~~~gL~vilr~GPyicaEw~ 126 (711)
.++.-++.|+.+++.|+|+|-+-| .+....|..-+..-. . ..|+.++++.++++||++|.|+=-+- ...-
T Consensus 11 ~~~~~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IARIv~Fk-D~~l 89 (316)
T PF13200_consen 11 SPERLDKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIARIVVFK-DPVL 89 (316)
T ss_pred CHHHHHHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEEEEEEec-ChHH
Confidence 456678899999999999987533 344333332222111 1 25999999999999999999962211 0000
Q ss_pred CCCCCceecccCCcc-cccCC-----hhHHHHHHHHHHHHHHHHHhc
Q 037832 127 FGAFPAWLKFIPGME-FRIDN-----QPFELEMQKWVTKIVDMLKAE 167 (711)
Q Consensus 127 ~GG~P~WL~~~p~~~-~R~~d-----~~y~~~~~~~~~~l~~~l~~~ 167 (711)
..-.|.|-.+..+-. .|..+ .+|.+++.+|.-.|+..+++.
T Consensus 90 a~~~pe~av~~~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa~~ 136 (316)
T PF13200_consen 90 AEAHPEWAVKTKDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEAAKL 136 (316)
T ss_pred hhhChhhEEECCCCCcccCCCCCccCCCCCHHHHHHHHHHHHHHHHc
Confidence 111466665322111 12111 258899999999999998854
No 88
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=71.12 E-value=41 Score=37.90 Aligned_cols=89 Identities=19% Similarity=0.237 Sum_probs=57.8
Q ss_pred eCCCCCcccHHHHHHHHHHCCCCEEEEcccCCCCCCCC----ceeeeecc---hhHHHHHHHHHHcCCEEEeecCccccc
Q 037832 51 HYPRSTPEMWPDLLKKAKDGGLDIVDTYVFWNGHEPTR----GKFYFEGR---YDLVRFIKLAQQAGLYVTLRIGPYACA 123 (711)
Q Consensus 51 hy~r~~~~~W~~~l~~~ka~G~N~V~~yv~Wn~hEp~~----G~~df~g~---~dl~~fl~~a~~~gL~vilr~GPyica 123 (711)
+|+.++.+.-.+.+++++++|++.+.+---|....... |.+.-+-. .-|..+.+.+++.||+.=|+..|-+++
T Consensus 51 ~~~d~~e~~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~~~kFP~Gl~~l~~~i~~~Gmk~GlW~ePe~v~ 130 (394)
T PF02065_consen 51 YYFDITEEKILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPDPKKFPNGLKPLADYIHSLGMKFGLWFEPEMVS 130 (394)
T ss_dssp HTTG--HHHHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBBTTTSTTHHHHHHHHHHHTT-EEEEEEETTEEE
T ss_pred cCcCCCHHHHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeEChhhhCCcHHHHHHHHHHCCCeEEEEecccccc
Confidence 45667777778899999999999888877786542221 33332211 138899999999999998888776544
Q ss_pred cc--CCCCCCceecccCC
Q 037832 124 EW--NFGAFPAWLKFIPG 139 (711)
Q Consensus 124 Ew--~~GG~P~WL~~~p~ 139 (711)
.= -+-..|.|+...++
T Consensus 131 ~~S~l~~~hPdw~l~~~~ 148 (394)
T PF02065_consen 131 PDSDLYREHPDWVLRDPG 148 (394)
T ss_dssp SSSCHCCSSBGGBTCCTT
T ss_pred chhHHHHhCccceeecCC
Confidence 21 12347999987654
No 89
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=70.70 E-value=7.4 Score=46.25 Aligned_cols=55 Identities=24% Similarity=0.379 Sum_probs=37.5
Q ss_pred HHHHHHHHCCCCEEEE-ccc---------------CCCCC-----CCCceee----ee--cchhHHHHHHHHHHcCCEEE
Q 037832 62 DLLKKAKDGGLDIVDT-YVF---------------WNGHE-----PTRGKFY----FE--GRYDLVRFIKLAQQAGLYVT 114 (711)
Q Consensus 62 ~~l~~~ka~G~N~V~~-yv~---------------Wn~hE-----p~~G~~d----f~--g~~dl~~fl~~a~~~gL~vi 114 (711)
+.|.-+|++|+|+|++ +|+ |.+.- |. +.|- +. ...++.+|++.|+++||.||
T Consensus 168 ~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~-~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~Vi 246 (605)
T TIGR02104 168 TGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPE-GSYSTNPYDPATRIRELKQMIQALHENGIRVI 246 (605)
T ss_pred hHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcC-hhhhcCCCccchHHHHHHHHHHHHHHCCCEEE
Confidence 4589999999999997 454 32221 10 0111 10 12689999999999999999
Q ss_pred eec
Q 037832 115 LRI 117 (711)
Q Consensus 115 lr~ 117 (711)
|..
T Consensus 247 lDv 249 (605)
T TIGR02104 247 MDV 249 (605)
T ss_pred EEE
Confidence 885
No 90
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=70.50 E-value=8.5 Score=45.25 Aligned_cols=55 Identities=15% Similarity=0.240 Sum_probs=41.1
Q ss_pred HHHHHHHHHHCCCCEEEE-cccCCCCCCC-Ccee----------eeecchhHHHHHHHHHHcCCEEEeec
Q 037832 60 WPDLLKKAKDGGLDIVDT-YVFWNGHEPT-RGKF----------YFEGRYDLVRFIKLAQQAGLYVTLRI 117 (711)
Q Consensus 60 W~~~l~~~ka~G~N~V~~-yv~Wn~hEp~-~G~~----------df~g~~dl~~fl~~a~~~gL~vilr~ 117 (711)
+.++|.-+|++|+++|-+ +++-+ |. ..-| +|....++.++++.|+++||+||+..
T Consensus 35 i~~~ldyl~~lGv~~i~l~P~~~~---~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~ 101 (551)
T PRK10933 35 VTQRLDYLQKLGVDAIWLTPFYVS---PQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDM 101 (551)
T ss_pred HHHhhHHHHhCCCCEEEECCCCCC---CCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 568899999999999987 45422 11 1122 24456799999999999999999874
No 91
>PRK09505 malS alpha-amylase; Reviewed
Probab=70.23 E-value=8.1 Score=46.53 Aligned_cols=59 Identities=15% Similarity=0.145 Sum_probs=43.0
Q ss_pred HHHHHHHHHHCCCCEEEE-cccCCCCCCC----Cc------------------eeeeecchhHHHHHHHHHHcCCEEEee
Q 037832 60 WPDLLKKAKDGGLDIVDT-YVFWNGHEPT----RG------------------KFYFEGRYDLVRFIKLAQQAGLYVTLR 116 (711)
Q Consensus 60 W~~~l~~~ka~G~N~V~~-yv~Wn~hEp~----~G------------------~~df~g~~dl~~fl~~a~~~gL~vilr 116 (711)
+.+.|.-+|++|+|+|-+ +++=+.|... .| .-.|....++.++++.|+++||+||+.
T Consensus 232 i~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD 311 (683)
T PRK09505 232 LTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFD 311 (683)
T ss_pred HHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 467899999999999986 4654433211 11 113455679999999999999999988
Q ss_pred cC
Q 037832 117 IG 118 (711)
Q Consensus 117 ~G 118 (711)
.=
T Consensus 312 ~V 313 (683)
T PRK09505 312 VV 313 (683)
T ss_pred EC
Confidence 53
No 92
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=69.69 E-value=8.8 Score=33.47 Aligned_cols=49 Identities=16% Similarity=0.230 Sum_probs=33.0
Q ss_pred eeeecccceEEEEEECCEEEEEEecccCCCceEEEeeeee-cCCccEEEEEEecCCCc
Q 037832 494 LLNIMSAGHGLNVYVNDQLQGLHHGSLETPQVTFSKKVKL-RGGVNKISLQSVAVGLP 550 (711)
Q Consensus 494 ~L~i~~~~D~~~VfVng~~vG~~~~~~~~~~~~~~~~~~l-~~g~n~L~ILven~Gr~ 550 (711)
.|++.+-...++-||||+++|...... .+.+ .+ ..|.++|++ +...|+.
T Consensus 35 ~l~a~~~~~~~~W~vdg~~~g~~~~~~---~~~~----~~~~~G~h~l~v-vD~~G~~ 84 (89)
T PF06832_consen 35 VLKAAGGRGPVYWFVDGEPLGTTQPGH---QLFW----QPDRPGEHTLTV-VDAQGRS 84 (89)
T ss_pred EEEEeCCCCcEEEEECCEEcccCCCCC---eEEe----CCCCCeeEEEEE-EcCCCCE
Confidence 455554466899999999998865432 2222 34 678899988 6666654
No 93
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=68.88 E-value=8.6 Score=44.40 Aligned_cols=113 Identities=15% Similarity=0.144 Sum_probs=81.0
Q ss_pred cHHHHHHHHHHCCCCEEEEcccCCCCCCC---CceeeeecchhHHHHHHHHHHcCCEEEeecCcccccccCCCCCCceec
Q 037832 59 MWPDLLKKAKDGGLDIVDTYVFWNGHEPT---RGKFYFEGRYDLVRFIKLAQQAGLYVTLRIGPYACAEWNFGAFPAWLK 135 (711)
Q Consensus 59 ~W~~~l~~~ka~G~N~V~~yv~Wn~hEp~---~G~~df~g~~dl~~fl~~a~~~gL~vilr~GPyicaEw~~GG~P~WL~ 135 (711)
.++++++.||++|+++-|.-|.|+-.=|. .+.-+-.|...-..+|+...++||..++-. | -| .+|.+|.
T Consensus 92 ~ykeDv~Lmk~lgv~afRFSIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTL--f---Hw---DlPq~Le 163 (524)
T KOG0626|consen 92 RYKEDVKLMKELGVDAFRFSISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTL--F---HW---DLPQALE 163 (524)
T ss_pred hhHHHHHHHHHcCCCeEEEEeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEE--e---cC---CCCHHHH
Confidence 47899999999999999999999976663 355777888888889999999999965442 1 24 4788887
Q ss_pred c-cCCcccccCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeec
Q 037832 136 F-IPGMEFRIDNQPFELEMQKWVTKIVDMLKAEKLFETQGGPIILSQ 181 (711)
Q Consensus 136 ~-~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Q 181 (711)
+ .-+-.-+..=.+|+++++--|++...++| ...--|...|+.++
T Consensus 164 DeYgGwLn~~ivedF~~yA~~CF~~fGDrVK--~WiT~NEP~v~s~~ 208 (524)
T KOG0626|consen 164 DEYGGWLNPEIVEDFRDYADLCFQEFGDRVK--HWITFNEPNVFSIG 208 (524)
T ss_pred HHhccccCHHHHHHHHHHHHHHHHHhcccce--eeEEecccceeeee
Confidence 6 33321222234577777778888888888 44334666666554
No 94
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=68.45 E-value=37 Score=35.56 Aligned_cols=92 Identities=12% Similarity=0.092 Sum_probs=60.2
Q ss_pred HHHHHHHHHHCCCCEEEEcccCCCCCCCCcee-eeecchhHHHHHHHHHHcCCEEEeecCcccccccCCCCCCceecccC
Q 037832 60 WPDLLKKAKDGGLDIVDTYVFWNGHEPTRGKF-YFEGRYDLVRFIKLAQQAGLYVTLRIGPYACAEWNFGAFPAWLKFIP 138 (711)
Q Consensus 60 W~~~l~~~ka~G~N~V~~yv~Wn~hEp~~G~~-df~g~~dl~~fl~~a~~~gL~vilr~GPyicaEw~~GG~P~WL~~~p 138 (711)
-++.++.+.++|++.|+. ...+|..-.- +++ ..+++++.++++++||.+.+- +||.
T Consensus 12 ~~~~~~~~~~~G~~~vel----~~~~~~~~~~~~~~-~~~~~~l~~~~~~~gl~ls~h-~p~~----------------- 68 (273)
T smart00518 12 LYKAFIEAVDIGARSFQL----FLGNPRSWKGVRLS-EETAEKFKEALKENNIDVSVH-APYL----------------- 68 (273)
T ss_pred HhHHHHHHHHcCCCEEEE----ECCCCCCCCCCCCC-HHHHHHHHHHHHHcCCCEEEE-CCce-----------------
Confidence 347899999999999999 4445533110 122 236889999999999987543 3432
Q ss_pred CcccccCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeec
Q 037832 139 GMEFRIDNQPFELEMQKWVTKIVDMLKAEKLFETQGGPIILSQ 181 (711)
Q Consensus 139 ~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Q 181 (711)
+.+.+.|+..+++..+++++.++..+ .+ |.++|.+.
T Consensus 69 -~nl~s~d~~~r~~~~~~l~~~i~~A~--~l----Ga~~vv~h 104 (273)
T smart00518 69 -INLASPDKEKVEKSIERLIDEIKRCE--EL----GIKALVFH 104 (273)
T ss_pred -ecCCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEEc
Confidence 12345677777777777777777666 33 45555543
No 95
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=68.35 E-value=7.1 Score=45.71 Aligned_cols=58 Identities=19% Similarity=0.155 Sum_probs=41.6
Q ss_pred ccHHHHHHHHHHCCCCEEEE-cccCCCCCCCCcee----------eeecchhHHHHHHHHHHcCCEEEeec
Q 037832 58 EMWPDLLKKAKDGGLDIVDT-YVFWNGHEPTRGKF----------YFEGRYDLVRFIKLAQQAGLYVTLRI 117 (711)
Q Consensus 58 ~~W~~~l~~~ka~G~N~V~~-yv~Wn~hEp~~G~~----------df~g~~dl~~fl~~a~~~gL~vilr~ 117 (711)
.-+.+.|.-+|++|+|+|-+ +|+=+.. ....| .|.+..++.++++.|+++||+|||..
T Consensus 28 ~gi~~~Ldyl~~LGv~~i~L~Pi~~~~~--~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~ 96 (539)
T TIGR02456 28 PGLTSKLDYLKWLGVDALWLLPFFQSPL--RDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIIDL 96 (539)
T ss_pred HHHHHhHHHHHHCCCCEEEECCCcCCCC--CCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 34678899999999999987 4441100 01112 24456799999999999999999873
No 96
>PF11324 DUF3126: Protein of unknown function (DUF3126); InterPro: IPR021473 This family of proteins with unknown function appear to be restricted to Alphaproteobacteria.
Probab=68.15 E-value=13 Score=30.79 Aligned_cols=24 Identities=17% Similarity=0.346 Sum_probs=20.8
Q ss_pred ccceEEEEEECCEEEEEEecccCC
Q 037832 499 SAGHGLNVYVNDQLQGLHHGSLET 522 (711)
Q Consensus 499 ~~~D~~~VfVng~~vG~~~~~~~~ 522 (711)
...|.|.||++++++|+++++.+.
T Consensus 25 k~~dsaEV~~g~EfiGvi~~Dede 48 (63)
T PF11324_consen 25 KKDDSAEVYIGDEFIGVIYRDEDE 48 (63)
T ss_pred CCCCceEEEeCCEEEEEEEeecCC
Confidence 468999999999999999987644
No 97
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=68.11 E-value=25 Score=42.23 Aligned_cols=111 Identities=16% Similarity=0.107 Sum_probs=65.7
Q ss_pred ccHHHHHHHHHHCCCCEEE---------------EcccCCCCCCCCceeeeecchhHHHHHHHHHHcCCEEEeecCcccc
Q 037832 58 EMWPDLLKKAKDGGLDIVD---------------TYVFWNGHEPTRGKFYFEGRYDLVRFIKLAQQAGLYVTLRIGPYAC 122 (711)
Q Consensus 58 ~~W~~~l~~~ka~G~N~V~---------------~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~vilr~GPyic 122 (711)
+.-...|+++|++|+|||- .|++|.+..-+..-|| -| ...++.+.|+.|-.+..||-.
T Consensus 334 ~~L~~lLdrlk~~G~ntV~lqafadp~gd~~~~s~yfP~~~lp~r~d~f~-----~~--aw~l~~r~~v~v~AWmp~~~~ 406 (671)
T PRK14582 334 RNIDVLIQRVKDMQISTVYLQAFADPDGDGLVKELYFPNRLLPMRADLFN-----RV--AWQLRTRAGVNVYAWMPVLSF 406 (671)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeccCCCCCccccccccCccccccccCCcC-----HH--HHHHHHhhCCEEEEeccceee
Confidence 3456789999999999996 4556733322222332 11 245588999999999999853
Q ss_pred c---------ccCCCCCCceecccCCcccccCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeecccccc
Q 037832 123 A---------EWNFGAFPAWLKFIPGMEFRIDNQPFELEMQKWVTKIVDMLKAEKLFETQGGPIILSQIENEF 186 (711)
Q Consensus 123 a---------Ew~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEy 186 (711)
. +++..+-|.-.. |+-..| =.+|..++++|++.|.+-|+++ .+|=++|..-+-
T Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~r--l~P~~pe~r~~i~~i~~dla~~-------~~~dGilf~Dd~ 468 (671)
T PRK14582 407 DLDPTLPRVKRLDTGEGKAQIH--PEQYRR--LSPFDDRVRAQVGMLYEDLAGH-------AAFDGILFHDDA 468 (671)
T ss_pred ccCCCcchhhhccccCCccccC--CCCCcC--CCCCCHHHHHHHHHHHHHHHHh-------CCCceEEecccc
Confidence 2 122122222221 110122 2357788999999999888853 245555544443
No 98
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=67.86 E-value=23 Score=34.99 Aligned_cols=56 Identities=23% Similarity=0.164 Sum_probs=32.3
Q ss_pred CeeeecccceEEEEEECCEEEEEEec-----ccCCC--ceEEEeeeeecCCccEEEEEEecCCC
Q 037832 493 PLLNIMSAGHGLNVYVNDQLQGLHHG-----SLETP--QVTFSKKVKLRGGVNKISLQSVAVGL 549 (711)
Q Consensus 493 ~~L~i~~~~D~~~VfVng~~vG~~~~-----~~~~~--~~~~~~~~~l~~g~n~L~ILven~Gr 549 (711)
..|.|...+ +-.+||||+.||...- +..+. -.++++.--|+.|.|+|.|++-+...
T Consensus 6 A~l~isa~g-~Y~l~vNG~~V~~~~l~P~~t~y~~~~~Y~tyDVt~~L~~G~N~iav~lg~gw~ 68 (172)
T PF08531_consen 6 ARLYISALG-RYELYVNGERVGDGPLAPGWTDYDKRVYYQTYDVTPYLRPGENVIAVWLGNGWY 68 (172)
T ss_dssp -EEEEEEES-EEEEEETTEEEEEE--------BTTEEEEEEEE-TTT--TTEEEEEEEEEE--S
T ss_pred EEEEEEeCe-eEEEEECCEEeeCCccccccccCCCceEEEEEeChHHhCCCCCEEEEEEeCCcc
Confidence 467776544 6689999999997541 11111 13444444478899999999976443
No 99
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=67.79 E-value=11 Score=40.77 Aligned_cols=66 Identities=20% Similarity=0.311 Sum_probs=47.4
Q ss_pred CcccHHHHHHHHHHCCCCE--EEEcccCCCCCCCCceeeeecc--hhHHHHHHHHHHcCCEEEeecCcccc
Q 037832 56 TPEMWPDLLKKAKDGGLDI--VDTYVFWNGHEPTRGKFYFEGR--YDLVRFIKLAQQAGLYVTLRIGPYAC 122 (711)
Q Consensus 56 ~~~~W~~~l~~~ka~G~N~--V~~yv~Wn~hEp~~G~~df~g~--~dl~~fl~~a~~~gL~vilr~GPyic 122 (711)
..+..++.++++|+.||.+ +.+-..|-... .-+.|.|+-. -|..++++..+++|+++++..=|+|+
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~~~lD~~w~~~~-~~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~ 91 (308)
T cd06593 22 DEEEVNEFADGMRERNLPCDVIHLDCFWMKEF-QWCDFEFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIA 91 (308)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEecccccCC-cceeeEECcccCCCHHHHHHHHHHCCCeEEEEecCCCC
Confidence 5667789999999999665 44444454211 1235665532 38999999999999999998878775
No 100
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=67.52 E-value=2.6 Score=49.42 Aligned_cols=31 Identities=32% Similarity=0.353 Sum_probs=27.3
Q ss_pred ccccccCCCCCCCCCCCCCchHHHHHHHHHH
Q 037832 309 VATSYDYDGVIDEYGLPSEPKWGHLSELHKV 339 (711)
Q Consensus 309 ~~TSYDYdApL~E~G~~~tpKy~~lr~l~~~ 339 (711)
..|||||+||+.|+|+++++||.++|+....
T Consensus 325 ~hts~d~~ep~lv~gd~~~~kyg~~~~~C~~ 355 (649)
T KOG0496|consen 325 LHTSYDYCEPALVAGDITTAKYGNLREACAA 355 (649)
T ss_pred chhhhhhcCccccccCcccccccchhhHHHH
Confidence 5899999999999999889999999955433
No 101
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=67.24 E-value=8.2 Score=45.30 Aligned_cols=79 Identities=18% Similarity=0.253 Sum_probs=47.4
Q ss_pred ccHHHHHHHHHHCCCCEEEEc-ccCCCCCCCCcee---e-----eecc----hhHHHHHHHHHHcCCEEEeecCcccccc
Q 037832 58 EMWPDLLKKAKDGGLDIVDTY-VFWNGHEPTRGKF---Y-----FEGR----YDLVRFIKLAQQAGLYVTLRIGPYACAE 124 (711)
Q Consensus 58 ~~W~~~l~~~ka~G~N~V~~y-v~Wn~hEp~~G~~---d-----f~g~----~dl~~fl~~a~~~gL~vilr~GPyicaE 124 (711)
+.=++.|..|+...||.|+.| ..|.+|.|-|+.= + +.++ .-+..+|+.|++.|+.++.=--=|-+-+
T Consensus 118 ~~~~~~i~~L~~yHIN~~QFYDW~~rH~~Pl~~~~~~~~~~w~D~~~r~i~~~~Vk~yI~~ah~~Gmkam~Ynmiyaa~~ 197 (559)
T PF13199_consen 118 EDIEAEIDQLNRYHINGLQFYDWMYRHHKPLPGTNGQPDQTWTDWANRQISTSTVKDYINAAHKYGMKAMAYNMIYAANN 197 (559)
T ss_dssp HHHHHHHHHHHHTT--EEEETS--SBTTB-S-SSS-EEE-TT-TTT--EEEHHHHHHHHHHHHHTT-EEEEEEESSEEET
T ss_pred hhHHHHHHHHHhhCcCeEEEEeeccccCCcCCCCCCchhhhhhhhcCCEehHHHHHHHHHHHHHcCcceehhHhhhcccc
Confidence 456789999999999999999 7899999987543 2 1221 3688999999999999884321121112
Q ss_pred c--CCCCCCceecc
Q 037832 125 W--NFGAFPAWLKF 136 (711)
Q Consensus 125 w--~~GG~P~WL~~ 136 (711)
. ..|=.|.|-.-
T Consensus 198 ~~~~~gv~~eW~ly 211 (559)
T PF13199_consen 198 NYEEDGVSPEWGLY 211 (559)
T ss_dssp T--S--SS-GGBEE
T ss_pred CcccccCCchhhhh
Confidence 1 24556888753
No 102
>PRK12677 xylose isomerase; Provisional
Probab=64.52 E-value=57 Score=36.66 Aligned_cols=88 Identities=18% Similarity=0.169 Sum_probs=54.1
Q ss_pred cHHHHHHHHHHCCCCEEEEc----ccCCCCCCCCceeeeecchhHHHHHHHHHHcCCEEE-eecCcccccccCCCCCCce
Q 037832 59 MWPDLLKKAKDGGLDIVDTY----VFWNGHEPTRGKFYFEGRYDLVRFIKLAQQAGLYVT-LRIGPYACAEWNFGAFPAW 133 (711)
Q Consensus 59 ~W~~~l~~~ka~G~N~V~~y----v~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~vi-lr~GPyicaEw~~GG~P~W 133 (711)
.+++.+++++++|+..|+.. ++|.... ......+.++.+++++.||.|. +-+.-+....+..|+
T Consensus 32 ~~~E~v~~~a~~Gf~gVElh~~~l~p~~~~~-------~~~~~~~~~lk~~l~~~GL~v~~v~~n~f~~p~~~~g~---- 100 (384)
T PRK12677 32 DPVEAVHKLAELGAYGVTFHDDDLVPFGATD-------AERDRIIKRFKKALDETGLVVPMVTTNLFTHPVFKDGA---- 100 (384)
T ss_pred CHHHHHHHHHHhCCCEEEecccccCCCCCCh-------hhhHHHHHHHHHHHHHcCCeeEEEecCCCCCccccCCc----
Confidence 47899999999999999983 1221110 1111258899999999999976 544322111222222
Q ss_pred ecccCCcccccCChhHHHHHHHHHHHHHHHHH
Q 037832 134 LKFIPGMEFRIDNQPFELEMQKWVTKIVDMLK 165 (711)
Q Consensus 134 L~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~ 165 (711)
+-+.|+..++...+.+.+.++.-+
T Consensus 101 --------lts~d~~~R~~Ai~~~~r~IdlA~ 124 (384)
T PRK12677 101 --------FTSNDRDVRRYALRKVLRNIDLAA 124 (384)
T ss_pred --------CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 344567776666666666555555
No 103
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=63.47 E-value=13 Score=38.89 Aligned_cols=52 Identities=17% Similarity=0.360 Sum_probs=42.3
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeeecchhHHHHHHHHHHcCCEEEeecCc
Q 037832 58 EMWPDLLKKAKDGGLDIVDTYVFWNGHEPTRGKFYFEGRYDLVRFIKLAQQAGLYVTLRIGP 119 (711)
Q Consensus 58 ~~W~~~l~~~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~vilr~GP 119 (711)
...++.++.+|+.||++|++ ..|..+++ ..+..++|+.++++||.|+-..|.
T Consensus 71 ~~~~~Yl~~~k~lGf~~IEi---------S~G~~~i~-~~~~~rlI~~~~~~g~~v~~EvG~ 122 (237)
T TIGR03849 71 GKFDEYLNECDELGFEAVEI---------SDGSMEIS-LEERCNLIERAKDNGFMVLSEVGK 122 (237)
T ss_pred hhHHHHHHHHHHcCCCEEEE---------cCCccCCC-HHHHHHHHHHHHhCCCeEeccccc
Confidence 56778888999999999998 44555554 237779999999999999988874
No 104
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=63.05 E-value=23 Score=39.82 Aligned_cols=54 Identities=19% Similarity=0.214 Sum_probs=42.8
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeeecchhHHHHHHHHHHcCCEEEeec
Q 037832 55 STPEMWPDLLKKAKDGGLDIVDTYVFWNGHEPTRGKFYFEGRYDLVRFIKLAQQAGLYVTLRI 117 (711)
Q Consensus 55 ~~~~~W~~~l~~~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~vilr~ 117 (711)
...+.|+++++.+|++||+...+ |+.- ...+.- ..|...++.|++.|+++++.+
T Consensus 14 yt~~dw~~di~~A~~~GIDgFaL----Nig~--~d~~~~---~~l~~a~~AA~~~gFKlf~Sf 67 (386)
T PF03659_consen 14 YTQEDWEADIRLAQAAGIDGFAL----NIGS--SDSWQP---DQLADAYQAAEAVGFKLFFSF 67 (386)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEE----eccc--CCcccH---HHHHHHHHHHHhcCCEEEEEe
Confidence 37888999999999999999988 5442 222222 378888999999999999886
No 105
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=62.41 E-value=40 Score=40.78 Aligned_cols=55 Identities=16% Similarity=0.267 Sum_probs=37.0
Q ss_pred HHHHHHHCCCCEEEE-cccCCCCC---CCCc-----eee----------e---ecchhHHHHHHHHHHcCCEEEeec
Q 037832 63 LLKKAKDGGLDIVDT-YVFWNGHE---PTRG-----KFY----------F---EGRYDLVRFIKLAQQAGLYVTLRI 117 (711)
Q Consensus 63 ~l~~~ka~G~N~V~~-yv~Wn~hE---p~~G-----~~d----------f---~g~~dl~~fl~~a~~~gL~vilr~ 117 (711)
.|.-+|++|+|+|++ +|+=...+ ...| -|| | ....++.++++.|+++||.|||..
T Consensus 189 ~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDv 265 (688)
T TIGR02100 189 MIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDV 265 (688)
T ss_pred hhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 478899999999996 45411111 1111 011 1 124589999999999999999984
No 106
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=61.79 E-value=40 Score=35.22 Aligned_cols=126 Identities=16% Similarity=0.332 Sum_probs=77.3
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCCCCCCC--ceeeeecchhHHHHHHHHHHcCCEEEeecCcccccccCCCCCCce
Q 037832 56 TPEMWPDLLKKAKDGGLDIVDTYVFWNGHEPTR--GKFYFEGRYDLVRFIKLAQQAGLYVTLRIGPYACAEWNFGAFPAW 133 (711)
Q Consensus 56 ~~~~W~~~l~~~ka~G~N~V~~yv~Wn~hEp~~--G~~df~g~~dl~~fl~~a~~~gL~vilr~GPyicaEw~~GG~P~W 133 (711)
..-.|+++|.-+|++||+.|+. +.-|.-+ -+.||+.. ....+..++.+.|+.+ |-+|=.
T Consensus 16 ~~~sW~erl~~AK~~GFDFvEm----SvDEsDeRLaRLDWs~~-er~~l~~ai~etgv~i-----pSmClS--------- 76 (287)
T COG3623 16 NGFSWLERLALAKELGFDFVEM----SVDESDERLARLDWSKE-ERLALVNAIQETGVRI-----PSMCLS--------- 76 (287)
T ss_pred CCCCHHHHHHHHHHcCCCeEEE----eccchHHHHHhcCCCHH-HHHHHHHHHHHhCCCc-----cchhhh---------
Confidence 4556999999999999999999 7777644 36777732 3446788889999843 333311
Q ss_pred ecccCCcccccCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeecccccccchhcccCc----chHHH---HHHHHH
Q 037832 134 LKFIPGMEFRIDNQPFELEMQKWVTKIVDMLKAEKLFETQGGPIILSQIENEFELVEWNLGD----RARVY---GQWAAH 206 (711)
Q Consensus 134 L~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~----~~~~y---~~~l~~ 206 (711)
.+.---+-+.|+.-++.....+.+-...-. ++ .|=-+|+- -|+-| |.+ +.+.| |+|..+
T Consensus 77 --aHRRfPfGS~D~~~r~~aleiM~KaI~LA~--dL------GIRtIQLA-GYDVY---YE~~d~eT~~rFi~g~~~a~~ 142 (287)
T COG3623 77 --AHRRFPFGSKDEATRQQALEIMEKAIQLAQ--DL------GIRTIQLA-GYDVY---YEEADEETRQRFIEGLKWAVE 142 (287)
T ss_pred --hhccCCCCCCCHHHHHHHHHHHHHHHHHHH--Hh------CceeEeec-cceee---eccCCHHHHHHHHHHHHHHHH
Confidence 011011346889888888888877555444 33 35555752 23322 322 33445 456666
Q ss_pred HHHhcCCc
Q 037832 207 MAIGLNIT 214 (711)
Q Consensus 207 ~~~~~g~~ 214 (711)
++.++.+.
T Consensus 143 lA~~aqV~ 150 (287)
T COG3623 143 LAARAQVM 150 (287)
T ss_pred HHHhhccE
Confidence 66665543
No 107
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=60.94 E-value=56 Score=36.65 Aligned_cols=122 Identities=11% Similarity=0.077 Sum_probs=66.4
Q ss_pred CCCceeeeecchhHHHHHHHHHHcCCEEEeecCcccccccCCCCCCceecccCCc----cccc-CChhHHHHHHHHHHHH
Q 037832 86 PTRGKFYFEGRYDLVRFIKLAQQAGLYVTLRIGPYACAEWNFGAFPAWLKFIPGM----EFRI-DNQPFELEMQKWVTKI 160 (711)
Q Consensus 86 p~~G~~df~g~~dl~~fl~~a~~~gL~vilr~GPyicaEw~~GG~P~WL~~~p~~----~~R~-~d~~y~~~~~~~~~~l 160 (711)
+..|.|||+....=..||+.|++.|...++-+- =-.|.|+.+.-.. ...+ -.+...++...|+..+
T Consensus 93 ~~dg~yDW~~D~gQrwfL~~Ak~rGV~~f~aFS---------NSPP~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~V 163 (384)
T PF14587_consen 93 PADGSYDWDADAGQRWFLKAAKERGVNIFEAFS---------NSPPWWMTKNGSASGGDDGSDNLKPDNYDAFADYLADV 163 (384)
T ss_dssp -TTS-B-TTSSHHHHHHHHHHHHTT---EEEE----------SSS-GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHHH
T ss_pred CCCCCcCCCCCHHHHHHHHHHHHcCCCeEEEee---------cCCCHHHhcCCCCCCCCccccccChhHHHHHHHHHHHH
Confidence 567999998776677799999999999776541 1367888753210 0001 1244567778888888
Q ss_pred HHHHHhcccccccCCceEeecccccccchh-------cccC-cchHHHHHHHHHHHHhcCCccceEecCC
Q 037832 161 VDMLKAEKLFETQGGPIILSQIENEFELVE-------WNLG-DRARVYGQWAAHMAIGLNITVPWIMCKQ 222 (711)
Q Consensus 161 ~~~l~~~~~~~~~gGpII~~QiENEyg~~~-------~~~~-~~~~~y~~~l~~~~~~~g~~vp~~~~~~ 222 (711)
+++++.+.+ +|=-+-.=||....- +++. +...+.++.|...+++.|+..-+..|+.
T Consensus 164 v~~~~~~GI------~f~~IsP~NEP~~~W~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~t~I~~~Ea 227 (384)
T PF14587_consen 164 VKHYKKWGI------NFDYISPFNEPQWNWAGGSQEGCHFTNEEQADVIRALDKALKKRGLSTKISACEA 227 (384)
T ss_dssp HHHHHCTT--------EEEEE--S-TTS-GG--SS-B----HHHHHHHHHHHHHHHHHHT-S-EEEEEEE
T ss_pred HHHHHhcCC------ccceeCCcCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEecch
Confidence 888864332 444444558875321 1111 2345688899999999999876666553
No 108
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=60.53 E-value=10 Score=31.46 Aligned_cols=39 Identities=26% Similarity=0.455 Sum_probs=25.8
Q ss_pred eeeecccceEEEEEECCEEEEEEecccCCCceEEEeeeeecCCccEEEE
Q 037832 494 LLNIMSAGHGLNVYVNDQLQGLHHGSLETPQVTFSKKVKLRGGVNKISL 542 (711)
Q Consensus 494 ~L~i~~~~D~~~VfVng~~vG~~~~~~~~~~~~~~~~~~l~~g~n~L~I 542 (711)
.|.|.+.-.-|.|||||+++|... ..+. .+..|.++|.|
T Consensus 3 ~l~V~s~p~gA~V~vdg~~~G~tp-------~~~~---~l~~G~~~v~v 41 (71)
T PF08308_consen 3 TLRVTSNPSGAEVYVDGKYIGTTP-------LTLK---DLPPGEHTVTV 41 (71)
T ss_pred EEEEEEECCCCEEEECCEEeccCc-------ceee---ecCCccEEEEE
Confidence 466666656789999999999432 2221 25577776666
No 109
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=60.49 E-value=2.8 Score=43.49 Aligned_cols=53 Identities=19% Similarity=0.214 Sum_probs=42.7
Q ss_pred HHHHHHHHHCCCCEEEEcccCCCCCCCCceeeeecchhHHHHHHHHHHcCCEEEee
Q 037832 61 PDLLKKAKDGGLDIVDTYVFWNGHEPTRGKFYFEGRYDLVRFIKLAQQAGLYVTLR 116 (711)
Q Consensus 61 ~~~l~~~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~vilr 116 (711)
-...+.+.++|.+.|.+.++|....+..-.+... ++.++.+.|++.||.||+.
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~~~~~~~~~~---~i~~v~~~~~~~gl~vIlE 131 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALGSGNEDEVIE---EIAAVVEECHKYGLKVILE 131 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHHTTHHHHHHH---HHHHHHHHHHTSEEEEEEE
T ss_pred HHHHHHHHHcCCceeeeeccccccccccHHHHHH---HHHHHHHHHhcCCcEEEEE
Confidence 5678899999999999999996655544333333 8999999999999999999
No 110
>KOG2024 consensus Beta-Glucuronidase GUSB (glycosylhydrolase superfamily 2) [Carbohydrate transport and metabolism]
Probab=60.46 E-value=13 Score=39.30 Aligned_cols=62 Identities=26% Similarity=0.190 Sum_probs=44.2
Q ss_pred cccccccCCC---CCCcceEEEEEEecCCCCCCcccCCCCCeeeecccceEEEEEECCEEEEEEec
Q 037832 456 YGLTEHLFLT---RDTTDYLWYTTEVFIDPSEGFLYNGQDPLLNIMSAGHGLNVYVNDQLQGLHHG 518 (711)
Q Consensus 456 ~~~~Eql~~t---~d~~GYl~Y~t~v~~~~~~~~~~~g~~~~L~i~~~~D~~~VfVng~~vG~~~~ 518 (711)
|.++-.+++. .|.+|.+||+.++.++.+. ....+....|++.++|-.|.|+|||.-+=...+
T Consensus 71 pss~nDi~~d~~lrdfv~~~wyer~v~vpe~w-~~~~~~r~vlr~~s~H~~Aivwvng~~~~~h~g 135 (297)
T KOG2024|consen 71 PSSFNDIGQDWRLRDFVGLVWYERTVTVPESW-TQDLGKRVVLRIGSAHSYAIVWVNGVDALEHEG 135 (297)
T ss_pred ccchhccccCCccccceeeeEEEEEEEcchhh-hhhcCCeEEEEeecccceeEEEEcceeeccccc
Confidence 3445566653 5788999999999887543 122234467899999999999999976655443
No 111
>PLN02361 alpha-amylase
Probab=60.03 E-value=19 Score=40.62 Aligned_cols=57 Identities=7% Similarity=-0.026 Sum_probs=39.9
Q ss_pred HHHHHHHHHCCCCEEEEcccCCC---CCCCCce-e----eeecchhHHHHHHHHHHcCCEEEeec
Q 037832 61 PDLLKKAKDGGLDIVDTYVFWNG---HEPTRGK-F----YFEGRYDLVRFIKLAQQAGLYVTLRI 117 (711)
Q Consensus 61 ~~~l~~~ka~G~N~V~~yv~Wn~---hEp~~G~-~----df~g~~dl~~fl~~a~~~gL~vilr~ 117 (711)
.+.|.-++++|+++|-+.=+... |--.+.. | .|....+|.++++.|++.||+||+..
T Consensus 32 ~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~ 96 (401)
T PLN02361 32 EGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADI 96 (401)
T ss_pred HHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEE
Confidence 46788899999999987433221 1111211 2 24456799999999999999999875
No 112
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=59.54 E-value=36 Score=27.60 Aligned_cols=55 Identities=16% Similarity=0.141 Sum_probs=42.9
Q ss_pred cccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeeecchhHHHHHHHHHHcCCEEEe
Q 037832 57 PEMWPDLLKKAKDGGLDIVDTYVFWNGHEPTRGKFYFEGRYDLVRFIKLAQQAGLYVTL 115 (711)
Q Consensus 57 ~~~W~~~l~~~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~vil 115 (711)
|..-.+.++.+.+.|+|...+|++= ++. ++.+.+.. .|.++..+..+++|..|.|
T Consensus 12 pG~La~v~~~l~~~~inI~~i~~~~--~~~-~~~~rl~~-~~~~~~~~~L~~~G~~v~~ 66 (66)
T cd04908 12 PGRLAAVTEILSEAGINIRALSIAD--TSE-FGILRLIV-SDPDKAKEALKEAGFAVKL 66 (66)
T ss_pred CChHHHHHHHHHHCCCCEEEEEEEe--cCC-CCEEEEEE-CCHHHHHHHHHHCCCEEEC
Confidence 4456688899999999999999732 333 58888766 5778999999999988754
No 113
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=59.32 E-value=22 Score=38.33 Aligned_cols=68 Identities=21% Similarity=0.325 Sum_probs=51.8
Q ss_pred CCCCcccHHHHHHHHHHCCC--CEEEEcccCCCCCCCCceeeeecc--hhHHHHHHHHHHcCCEEEeecCccccc
Q 037832 53 PRSTPEMWPDLLKKAKDGGL--DIVDTYVFWNGHEPTRGKFYFEGR--YDLVRFIKLAQQAGLYVTLRIGPYACA 123 (711)
Q Consensus 53 ~r~~~~~W~~~l~~~ka~G~--N~V~~yv~Wn~hEp~~G~~df~g~--~dl~~fl~~a~~~gL~vilr~GPyica 123 (711)
...+.+.-++.++++++.|+ .+|-+-..|. ..-|.|.|+-. -|..++++..++.|+++++..=|+|+.
T Consensus 25 ~~~s~~~v~~~~~~~~~~~iP~d~i~iD~~w~---~~~g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~ 96 (303)
T cd06592 25 ADINQETVLNYAQEIIDNGFPNGQIEIDDNWE---TCYGDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINT 96 (303)
T ss_pred cCcCHHHHHHHHHHHHHcCCCCCeEEeCCCcc---ccCCccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCC
Confidence 44577778899999999996 4666655563 34566666532 389999999999999999998888753
No 114
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=58.72 E-value=14 Score=47.41 Aligned_cols=56 Identities=29% Similarity=0.399 Sum_probs=39.2
Q ss_pred HHHHHHHHCCCCEEEE-cccCCCCCCC---Cce-----ee----------ee--cchhHHHHHHHHHHcCCEEEeec
Q 037832 62 DLLKKAKDGGLDIVDT-YVFWNGHEPT---RGK-----FY----------FE--GRYDLVRFIKLAQQAGLYVTLRI 117 (711)
Q Consensus 62 ~~l~~~ka~G~N~V~~-yv~Wn~hEp~---~G~-----~d----------f~--g~~dl~~fl~~a~~~gL~vilr~ 117 (711)
+.|.-+|++|+|+|++ +|+=+..|.. .|. |+ |. +..++.++++.|+++||.|||..
T Consensus 191 ~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILDv 267 (1221)
T PRK14510 191 EAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDV 267 (1221)
T ss_pred hhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEEE
Confidence 4566899999999997 5653322211 110 21 23 56789999999999999999984
No 115
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=56.33 E-value=37 Score=36.13 Aligned_cols=83 Identities=19% Similarity=0.348 Sum_probs=61.0
Q ss_pred eEEEEcCCcEEECCEEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeee--cchhHHHHHH
Q 037832 27 STVTYDRKGLIINGQRRILFSGSIHYPRSTPEMWPDLLKKAKDGGLDIVDTYVFWNGHEPTRGKFYFE--GRYDLVRFIK 104 (711)
Q Consensus 27 ~~v~~d~~~~~i~G~p~~~~sg~~hy~r~~~~~W~~~l~~~ka~G~N~V~~yv~Wn~hEp~~G~~df~--g~~dl~~fl~ 104 (711)
..|.+ ..+.+.|.+++++.|=.=- -+++.-.+.-+++|++|+..++.|.+=+-..| +.|. |...+..+-+
T Consensus 14 ~~~~~--~~~~~g~~~~~~iaGPCsi--e~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~----~s~~G~g~~gl~~l~~ 85 (266)
T PRK13398 14 TIVKV--GDVVIGGEEKIIIAGPCAV--ESEEQMVKVAEKLKELGVHMLRGGAFKPRTSP----YSFQGLGEEGLKILKE 85 (266)
T ss_pred cEEEE--CCEEEcCCCEEEEEeCCcC--CCHHHHHHHHHHHHHcCCCEEEEeeecCCCCC----CccCCcHHHHHHHHHH
Confidence 34544 3377777788888884321 15667778889999999999999988744332 3555 4678888999
Q ss_pred HHHHcCCEEEeec
Q 037832 105 LAQQAGLYVTLRI 117 (711)
Q Consensus 105 ~a~~~gL~vilr~ 117 (711)
.|++.||.++-.|
T Consensus 86 ~~~~~Gl~~~te~ 98 (266)
T PRK13398 86 VGDKYNLPVVTEV 98 (266)
T ss_pred HHHHcCCCEEEee
Confidence 9999999988775
No 116
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=56.04 E-value=23 Score=43.51 Aligned_cols=64 Identities=22% Similarity=0.109 Sum_probs=45.3
Q ss_pred CcccHHHHHHHHHHCCCCEEEE-cccCCC----CCCCC-----ceeeeecchhHHHHHHHHHHcCCEEEeecCc
Q 037832 56 TPEMWPDLLKKAKDGGLDIVDT-YVFWNG----HEPTR-----GKFYFEGRYDLVRFIKLAQQAGLYVTLRIGP 119 (711)
Q Consensus 56 ~~~~W~~~l~~~ka~G~N~V~~-yv~Wn~----hEp~~-----G~~df~g~~dl~~fl~~a~~~gL~vilr~GP 119 (711)
+-+.+.+.|.-++++|+++|-+ +++=+. |--.. =.-.|.+..++.+|++.|+++||.||+..=|
T Consensus 14 tf~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVp 87 (825)
T TIGR02401 14 TFDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVP 87 (825)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 4455889999999999999986 343111 11000 0113557789999999999999999998654
No 117
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=55.59 E-value=58 Score=37.88 Aligned_cols=274 Identities=18% Similarity=0.232 Sum_probs=129.0
Q ss_pred EEeEEEEEEeeC------CCCCcccHHHHHHHH---HHCCCCEEEEccc--------CCCCCCCCc-----eeeeec--c
Q 037832 41 QRRILFSGSIHY------PRSTPEMWPDLLKKA---KDGGLDIVDTYVF--------WNGHEPTRG-----KFYFEG--R 96 (711)
Q Consensus 41 ~p~~~~sg~~hy------~r~~~~~W~~~l~~~---ka~G~N~V~~yv~--------Wn~hEp~~G-----~~df~g--~ 96 (711)
+++.=+||++=- .+.+++.=++.|+.+ +-+|++.+|+.|- ++.-+. |+ .|+... .
T Consensus 74 Q~i~GFGga~Tdasa~~l~~l~~~~r~~ll~~~F~~~G~g~s~~R~pIgssDfs~~~Yty~d~-~~D~~l~~Fs~~~~d~ 152 (496)
T PF02055_consen 74 QTIDGFGGAFTDASAYNLQKLSEEQRDELLRSLFSEDGIGYSLLRVPIGSSDFSTRPYTYDDV-PGDFNLSNFSIAREDK 152 (496)
T ss_dssp EE--EEEEE--HHHHHHHHTS-HHHHHHHHHHHHSTTTT---EEEEEES--SSSSS---ST-S-TTHTTTTT---HHHHH
T ss_pred eEEEEEeeeHHHHHHHHHHhCCHHHHHHHHHHHhhcCCceEEEEEeeccCcCCcCCcccccCC-CCCCccccCCccccch
Confidence 344557787732 233443333333332 4479999999875 333222 22 222221 0
Q ss_pred hhHHHHHHHHHHc--CCEEEeecCcccccccCCCCCCceecccCCc----ccc-cCChhHHHHHHHHHHHHHHHHHhccc
Q 037832 97 YDLVRFIKLAQQA--GLYVTLRIGPYACAEWNFGAFPAWLKFIPGM----EFR-IDNQPFELEMQKWVTKIVDMLKAEKL 169 (711)
Q Consensus 97 ~dl~~fl~~a~~~--gL~vilr~GPyicaEw~~GG~P~WL~~~p~~----~~R-~~d~~y~~~~~~~~~~l~~~l~~~~~ 169 (711)
..+.-+|+.|++. +|+++.-| |. .|+|++....+ .++ ..++.|.++...|+.+-++.++++
T Consensus 153 ~~~ip~ik~a~~~~~~lki~aSp-------WS---pP~WMKtn~~~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~~~-- 220 (496)
T PF02055_consen 153 KYKIPLIKEALAINPNLKIFASP-------WS---PPAWMKTNGSMNGGGSLKGSLGDEYYQAYADYFVKFIQAYKKE-- 220 (496)
T ss_dssp TTHHHHHHHHHHHHTT-EEEEEE-------S------GGGBTTSSSCSS-BBSCGTTSHHHHHHHHHHHHHHHHHHCT--
T ss_pred hhHHHHHHHHHHhCCCcEEEEec-------CC---CCHHHccCCcCcCCCccCCCCCchhHHHHHHHHHHHHHHHHHC--
Confidence 1223577777664 57887776 63 89999874433 233 234578888888888888888744
Q ss_pred ccccCCceEeecccccccchh---ccc-----C-cchHHHHH-HHHHHHHhcCC--ccceEecCCC--CCCc---cccc-
Q 037832 170 FETQGGPIILSQIENEFELVE---WNL-----G-DRARVYGQ-WAAHMAIGLNI--TVPWIMCKQA--NAPD---PIID- 231 (711)
Q Consensus 170 ~~~~gGpII~~QiENEyg~~~---~~~-----~-~~~~~y~~-~l~~~~~~~g~--~vp~~~~~~~--~~~~---~~~~- 231 (711)
|=+|-++-+-||..... ..| . +..++|+. .|.-.+++.++ ++-++++|.. ..|+ .++.
T Consensus 221 ----GI~i~aiT~QNEP~~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~~~D~n~~~~~~~~~~il~d 296 (496)
T PF02055_consen 221 ----GIPIWAITPQNEPDNGSDPNYPWPSMGWTPEEQADFIKNYLGPALRKAGLGKDVKILIYDHNRDNLPDYADTILND 296 (496)
T ss_dssp ----T--ESEEESSSSCCGGGSTT-SSC--B--HHHHHHHHHHTHHHHHHTSTT-TTSEEEEEEEEGGGTTHHHHHHHTS
T ss_pred ----CCCeEEEeccCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCCcccchhhhhhhcC
Confidence 44899999999986411 111 1 13456664 47778888876 6666666531 2221 1111
Q ss_pred -----CCC--CCcc---CC-------CCCCCCCCCccccccccccccccCCCCCc---CCHHHHHHHHHHHHHhCCccee
Q 037832 232 -----TCN--DFYC---DW-------FSPNKDYKPKMWTENWTAWVQQFGTPPLY---RPHEDLAYSVLKFIQTGGSMNN 291 (711)
Q Consensus 232 -----~~~--~~~~---~~-------~~~~~p~~P~~~~E~~~Gwf~~wG~~~~~---~~~~~~~~~~~~~l~~g~s~~n 291 (711)
.+. +++| +. .....|++.++.||-..|-- .|+..... ..++..+..+..-+..+.+ +
T Consensus 297 ~~A~~yv~GiA~HwY~g~~~~~~l~~~h~~~P~k~l~~TE~~~g~~-~~~~~~~~g~w~~~~~y~~~ii~~lnn~~~--g 373 (496)
T PF02055_consen 297 PEAAKYVDGIAFHWYGGDPSPQALDQVHNKFPDKFLLFTEACCGSW-NWDTSVDLGSWDRAERYAHDIIGDLNNWVS--G 373 (496)
T ss_dssp HHHHTTEEEEEEEETTCS-HCHHHHHHHHHSTTSEEEEEEEESS-S-TTS-SS-TTHHHHHHHHHHHHHHHHHTTEE--E
T ss_pred hhhHhheeEEEEECCCCCchhhHHHHHHHHCCCcEEEeeccccCCC-CcccccccccHHHHHHHHHHHHHHHHhhce--e
Confidence 011 1122 11 11447999999999875531 12211111 1133444444444555543 2
Q ss_pred eeEe------eccCCCCCCC-CCCccccccCCCCCCCCCC-CCCchHHHHHHHHHHHh
Q 037832 292 YYMY------HGGTNFDRTN-GAFVATSYDYDGVIDEYGL-PSEPKWGHLSELHKVIK 341 (711)
Q Consensus 292 ~YM~------hGGTNfG~~~-g~~~~TSYDYdApL~E~G~-~~tpKy~~lr~l~~~i~ 341 (711)
+-++ .||-|++.-. .+..+. |- +.+. ..+|.|+.|....+|++
T Consensus 374 w~~WNl~LD~~GGP~~~~n~~d~~iiv--d~-----~~~~~~~~p~yY~~gHfSKFV~ 424 (496)
T PF02055_consen 374 WIDWNLALDENGGPNWVGNFCDAPIIV--DS-----DTGEFYKQPEYYAMGHFSKFVR 424 (496)
T ss_dssp EEEEESEBETTS---TT---B--SEEE--EG-----GGTEEEE-HHHHHHHHHHTTS-
T ss_pred eeeeeeecCCCCCCcccCCCCCceeEE--Ec-----CCCeEEEcHHHHHHHHHhcccC
Confidence 3222 4888875321 111111 10 1121 23789999998887765
No 118
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=55.23 E-value=38 Score=36.91 Aligned_cols=59 Identities=12% Similarity=0.153 Sum_probs=43.8
Q ss_pred CcccHHHHHHHHHHCCCCEEEEccc--CCC---CCC------------------------CCceeeeecchhHHHHHHHH
Q 037832 56 TPEMWPDLLKKAKDGGLDIVDTYVF--WNG---HEP------------------------TRGKFYFEGRYDLVRFIKLA 106 (711)
Q Consensus 56 ~~~~W~~~l~~~ka~G~N~V~~yv~--Wn~---hEp------------------------~~G~~df~g~~dl~~fl~~a 106 (711)
+.+..++.|+.|...++|++..++- |.+ ..| ..|.|. ..++.++++.|
T Consensus 15 ~~~~ik~~id~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT---~~di~eiv~yA 91 (326)
T cd06564 15 SMDFLKDIIKTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYT---KEEFKELIAYA 91 (326)
T ss_pred CHHHHHHHHHHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCCCCCCCCccc---HHHHHHHHHHH
Confidence 6888899999999999999997653 222 111 122232 35999999999
Q ss_pred HHcCCEEEeec
Q 037832 107 QQAGLYVTLRI 117 (711)
Q Consensus 107 ~~~gL~vilr~ 117 (711)
+++|+.||-.+
T Consensus 92 ~~rgI~vIPEI 102 (326)
T cd06564 92 KDRGVNIIPEI 102 (326)
T ss_pred HHcCCeEeccC
Confidence 99999999663
No 119
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=54.21 E-value=1.7e+02 Score=30.79 Aligned_cols=65 Identities=12% Similarity=0.202 Sum_probs=47.8
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCcee--eeec--chhHHHHHHHHHHcCCEEEeecCccc
Q 037832 56 TPEMWPDLLKKAKDGGLDIVDTYVFWNGHEPTRGKF--YFEG--RYDLVRFIKLAQQAGLYVTLRIGPYA 121 (711)
Q Consensus 56 ~~~~W~~~l~~~ka~G~N~V~~yv~Wn~hEp~~G~~--df~g--~~dl~~fl~~a~~~gL~vilr~GPyi 121 (711)
..+...+.++++++.||..=.+.+-+...+. .+.| +|+. --|..++++..++.|++|++..=|+|
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~~~lD~~~~~~-~~~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~P~v 90 (265)
T cd06589 22 DQDKVLEVIDGMRENDIPLDGFVLDDDYTDG-YGDFTFDWDAGKFPNPKSMIDELHDNGVKLVLWIDPYI 90 (265)
T ss_pred CHHHHHHHHHHHHHcCCCccEEEECcccccC-CceeeeecChhhCCCHHHHHHHHHHCCCEEEEEeChhH
Confidence 5666788999999999885555544444332 3555 4432 23899999999999999999987776
No 120
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=52.99 E-value=37 Score=37.48 Aligned_cols=82 Identities=18% Similarity=0.342 Sum_probs=58.7
Q ss_pred eEEEEcCCcEEECCEEeEEEEEEeeCCCC-CcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeeec--chhHHHHH
Q 037832 27 STVTYDRKGLIINGQRRILFSGSIHYPRS-TPEMWPDLLKKAKDGGLDIVDTYVFWNGHEPTRGKFYFEG--RYDLVRFI 103 (711)
Q Consensus 27 ~~v~~d~~~~~i~G~p~~~~sg~~hy~r~-~~~~W~~~l~~~ka~G~N~V~~yv~Wn~hEp~~G~~df~g--~~dl~~fl 103 (711)
..|.+ ..+.+.|.++.++.| +-.+ +++.-.+.-+.+|++|.++++.|+|- |+---|.|.| ..-|..+.
T Consensus 80 t~v~~--~~~~ig~~~~~~IAG---PCsiEs~e~~~~~A~~lk~~ga~~~r~~~fK----pRTsp~sf~G~g~~gL~~L~ 150 (335)
T PRK08673 80 TVVKV--GDVEIGGGKPVVIAG---PCSVESEEQILEIARAVKEAGAQILRGGAFK----PRTSPYSFQGLGEEGLKLLA 150 (335)
T ss_pred CEEEE--CCEEECCCceEEEEe---cCccCCHHHHHHHHHHHHHhchhhccCcEec----CCCCCcccccccHHHHHHHH
Confidence 34444 346777788888888 2222 45666677888889999999999985 4333367765 45677777
Q ss_pred HHHHHcCCEEEeec
Q 037832 104 KLAQQAGLYVTLRI 117 (711)
Q Consensus 104 ~~a~~~gL~vilr~ 117 (711)
+.|++.||.++-.+
T Consensus 151 ~~~~~~Gl~v~tev 164 (335)
T PRK08673 151 EAREETGLPIVTEV 164 (335)
T ss_pred HHHHHcCCcEEEee
Confidence 88999999988775
No 121
>PRK03705 glycogen debranching enzyme; Provisional
Probab=52.39 E-value=23 Score=42.64 Aligned_cols=55 Identities=20% Similarity=0.303 Sum_probs=36.9
Q ss_pred HHHHHHHCCCCEEEE-cccCCCCCCCC---c-----eee----------eec-----chhHHHHHHHHHHcCCEEEeec
Q 037832 63 LLKKAKDGGLDIVDT-YVFWNGHEPTR---G-----KFY----------FEG-----RYDLVRFIKLAQQAGLYVTLRI 117 (711)
Q Consensus 63 ~l~~~ka~G~N~V~~-yv~Wn~hEp~~---G-----~~d----------f~g-----~~dl~~fl~~a~~~gL~vilr~ 117 (711)
.|.-+|++|+|+|++ +|+=...++.. | -|| |.. ..++.++++.|++.||.|||..
T Consensus 184 ~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~ygt~~~~~~~efk~LV~~~H~~GI~VIlDv 262 (658)
T PRK03705 184 MIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAYASGPETALDEFRDAVKALHKAGIEVILDV 262 (658)
T ss_pred chHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccccccccccCCCCcchHHHHHHHHHHHHHCCCEEEEEE
Confidence 488999999999996 45422112110 1 011 222 1479999999999999999884
No 122
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=52.33 E-value=25 Score=38.21 Aligned_cols=66 Identities=17% Similarity=0.201 Sum_probs=48.4
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCc--eeeeecch--hHHHHHHHHHHcCCEEEeecCcccc
Q 037832 56 TPEMWPDLLKKAKDGGLDIVDTYVFWNGHEPTRG--KFYFEGRY--DLVRFIKLAQQAGLYVTLRIGPYAC 122 (711)
Q Consensus 56 ~~~~W~~~l~~~ka~G~N~V~~yv~Wn~hEp~~G--~~df~g~~--dl~~fl~~a~~~gL~vilr~GPyic 122 (711)
..+.-++.++++++.||..=.+.+-|.... ..+ .|+|+..+ |..++++..++.|++|++..=|+|.
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~v~ 91 (319)
T cd06591 22 TQEELLDVAKEYRKRGIPLDVIVQDWFYWP-KQGWGEWKFDPERFPDPKAMVRELHEMNAELMISIWPTFG 91 (319)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEechhhc-CCCceeEEEChhhCCCHHHHHHHHHHCCCEEEEEecCCcC
Confidence 455567899999999887655555544333 234 77776443 8999999999999999988767763
No 123
>PLN00196 alpha-amylase; Provisional
Probab=51.94 E-value=32 Score=39.23 Aligned_cols=59 Identities=14% Similarity=0.079 Sum_probs=41.3
Q ss_pred HHHHHHHHHCCCCEEEEc-ccCCC--CCCCCce-ee-----eecchhHHHHHHHHHHcCCEEEeecCc
Q 037832 61 PDLLKKAKDGGLDIVDTY-VFWNG--HEPTRGK-FY-----FEGRYDLVRFIKLAQQAGLYVTLRIGP 119 (711)
Q Consensus 61 ~~~l~~~ka~G~N~V~~y-v~Wn~--hEp~~G~-~d-----f~g~~dl~~fl~~a~~~gL~vilr~GP 119 (711)
.+.|.-+|++|+++|-+. ++-+. |--.+.. |+ |....+|.++++.|++.||+||+..=+
T Consensus 47 ~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDvV~ 114 (428)
T PLN00196 47 MGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADIVI 114 (428)
T ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEECc
Confidence 478888999999999874 44322 2111211 22 334569999999999999999988533
No 124
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=51.01 E-value=32 Score=42.54 Aligned_cols=61 Identities=20% Similarity=0.191 Sum_probs=45.4
Q ss_pred CcccHHHHHHHHHHCCCCEEEE-cccCCCCCCCCc------eee-------eecchhHHHHHHHHHHcCCEEEeecCcc
Q 037832 56 TPEMWPDLLKKAKDGGLDIVDT-YVFWNGHEPTRG------KFY-------FEGRYDLVRFIKLAQQAGLYVTLRIGPY 120 (711)
Q Consensus 56 ~~~~W~~~l~~~ka~G~N~V~~-yv~Wn~hEp~~G------~~d-------f~g~~dl~~fl~~a~~~gL~vilr~GPy 120 (711)
+-+.+.+.|.-++++|+|+|-+ +++ +..+| ..| |.+..++.+|++.|+++||.||+..=|-
T Consensus 18 tf~~~~~~l~YL~~LGis~IyLsPi~----~a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~N 92 (879)
T PRK14511 18 TFDDAAELVPYFADLGVSHLYLSPIL----AARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVPN 92 (879)
T ss_pred CHHHHHHHhHHHHHcCCCEEEECcCc----cCCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEeccc
Confidence 4456889999999999999987 333 12222 112 4467899999999999999999986553
No 125
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=50.98 E-value=29 Score=45.85 Aligned_cols=60 Identities=22% Similarity=0.221 Sum_probs=45.9
Q ss_pred CcccHHHHHHHHHHCCCCEEEEc-ccCCCCCCCCce---e----------eeecchhHHHHHHHHHHcCCEEEeecCc
Q 037832 56 TPEMWPDLLKKAKDGGLDIVDTY-VFWNGHEPTRGK---F----------YFEGRYDLVRFIKLAQQAGLYVTLRIGP 119 (711)
Q Consensus 56 ~~~~W~~~l~~~ka~G~N~V~~y-v~Wn~hEp~~G~---~----------df~g~~dl~~fl~~a~~~gL~vilr~GP 119 (711)
+-+.|.+.|.-+|++|+|+|-+- ++ +..+|. | .|.+..++.+|++.|+++||.||+..=|
T Consensus 756 tf~~~~~~l~Yl~~LGv~~i~lsPi~----~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDiV~ 829 (1693)
T PRK14507 756 TFADAEAILPYLAALGISHVYASPIL----KARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDIVP 829 (1693)
T ss_pred CHHHHHHHhHHHHHcCCCEEEECCCc----CCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 55668999999999999999873 33 222221 2 2457789999999999999999988544
No 126
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=50.63 E-value=50 Score=36.49 Aligned_cols=114 Identities=21% Similarity=0.257 Sum_probs=66.3
Q ss_pred EEEEcccCCCCCCCCceeeeecchhHHHHHHHHHHcCCEEEeecCcccccccCCCCCCceecccCCcccccCChhHHHHH
Q 037832 74 IVDTYVFWNGHEPTRGKFYFEGRYDLVRFIKLAQQAGLYVTLRIGPYACAEWNFGAFPAWLKFIPGMEFRIDNQPFELEM 153 (711)
Q Consensus 74 ~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~vilr~GPyicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~ 153 (711)
.|.+.|.|+++--+. -=...++.|+++|+.|+--. .=||+ +-+.|+.. .+.. ++ +..
T Consensus 32 yvD~fvywsh~~~~i---------Pp~~~idaAHknGV~Vlgti----~~e~~--~~~~~~~~----lL~~-~~---~~~ 88 (339)
T cd06547 32 YVDTFVYFSHSAVTI---------PPADWINAAHRNGVPVLGTF----IFEWT--GQVEWLED----FLKK-DE---DGS 88 (339)
T ss_pred hhheeecccCccccC---------CCcHHHHHHHhcCCeEEEEE----EecCC--CchHHHHH----Hhcc-Cc---ccc
Confidence 477888999853321 01267999999999997422 33565 33455543 1111 11 123
Q ss_pred HHHHHHHHHHHHhcccccccCCceEeeccccccc-chhcccCcchHHHHHHHHHHHHhc--CCccceEe
Q 037832 154 QKWVTKIVDMLKAEKLFETQGGPIILSQIENEFE-LVEWNLGDRARVYGQWAAHMAIGL--NITVPWIM 219 (711)
Q Consensus 154 ~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg-~~~~~~~~~~~~y~~~l~~~~~~~--g~~vp~~~ 219 (711)
.++.++|+++.+.+.+ .| +.+-+|+..+ .. ..+.-.++++.|++.+++. +..|-|+.
T Consensus 89 ~~~a~kLv~lak~yGf----DG--w~iN~E~~~~~~~---~~~~l~~F~~~L~~~~~~~~~~~~v~WYD 148 (339)
T cd06547 89 FPVADKLVEVAKYYGF----DG--WLINIETELGDAE---KAKRLIAFLRYLKAKLHENVPGSLVIWYD 148 (339)
T ss_pred hHHHHHHHHHHHHhCC----Cc--eEeeeeccCCcHH---HHHHHHHHHHHHHHHHhhcCCCcEEEEEe
Confidence 5678888888886554 23 6777888873 21 0123445777777777664 33444553
No 127
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=50.35 E-value=26 Score=36.93 Aligned_cols=50 Identities=28% Similarity=0.214 Sum_probs=34.8
Q ss_pred HHHHHHHCCCCEEEEcccCCCCCCCCceeeeecchhHHHHHHHHHHcCCEEEeecC
Q 037832 63 LLKKAKDGGLDIVDTYVFWNGHEPTRGKFYFEGRYDLVRFIKLAQQAGLYVTLRIG 118 (711)
Q Consensus 63 ~l~~~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~vilr~G 118 (711)
..+++|++|++.|-+ +|-|.+. .|. +.+..+.+=++.|.++||.+|++.|
T Consensus 78 S~~mLkd~G~~~vii----GHSERR~-~f~-Etd~~v~~K~~~a~~~gl~pIvCiG 127 (250)
T PRK00042 78 SAEMLKDLGVKYVII----GHSERRQ-YFG-ETDELVNKKVKAALKAGLTPILCVG 127 (250)
T ss_pred CHHHHHHCCCCEEEe----CcccccC-ccC-cCHHHHHHHHHHHHHCCCEEEEEcC
Confidence 456899999999998 6666654 222 1222333334459999999999987
No 128
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=49.42 E-value=49 Score=26.94 Aligned_cols=44 Identities=30% Similarity=0.406 Sum_probs=34.2
Q ss_pred cHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeeecchhHHHHHHHHHHcCCEEEe
Q 037832 59 MWPDLLKKAKDGGLDIVDTYVFWNGHEPTRGKFYFEGRYDLVRFIKLAQQAGLYVTL 115 (711)
Q Consensus 59 ~W~~~l~~~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~vil 115 (711)
..++.++++|+.|+++|-+ .-|.. +. ...++.+++++.||.||.
T Consensus 16 ~~~~~~~~a~~~g~~~v~i----TDh~~------~~---~~~~~~~~~~~~gi~~i~ 59 (67)
T smart00481 16 SPEELVKRAKELGLKAIAI----TDHGN------LF---GAVEFYKAAKKAGIKPII 59 (67)
T ss_pred CHHHHHHHHHHcCCCEEEE----eeCCc------cc---CHHHHHHHHHHcCCeEEE
Confidence 3678999999999999988 55542 22 456888999999998874
No 129
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=49.19 E-value=33 Score=35.16 Aligned_cols=45 Identities=20% Similarity=0.118 Sum_probs=37.8
Q ss_pred HHHHHHHCCCCEEEEcccCCCCCCCCceeeeecchhHHHHHHHHHHcCCEEEeec
Q 037832 63 LLKKAKDGGLDIVDTYVFWNGHEPTRGKFYFEGRYDLVRFIKLAQQAGLYVTLRI 117 (711)
Q Consensus 63 ~l~~~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~vilr~ 117 (711)
...++|++|++.|-+ +|-|.+ |.-+ |+.+=++.|.++||.+|++.
T Consensus 73 S~~mLkd~G~~~vii----GHSERR---f~Et---di~~Kv~~a~~~gl~~IvCi 117 (205)
T TIGR00419 73 SAEMLKDIGAKGTLI----NHSERR---MKLA---DIEKKIARLKELGLTSVVCT 117 (205)
T ss_pred CHHHHHHcCCCEEEE----CcccCC---CCcc---HHHHHHHHHHHCCCEEEEEE
Confidence 456799999998888 887776 5444 68888999999999999996
No 130
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=48.67 E-value=43 Score=40.03 Aligned_cols=75 Identities=15% Similarity=0.263 Sum_probs=54.4
Q ss_pred CcccHHHHHHHHHHCCCCEEEE-ccc-----C--CCCCCCCceee---------eecchhHHHHHHHHHHcCCEEEeecC
Q 037832 56 TPEMWPDLLKKAKDGGLDIVDT-YVF-----W--NGHEPTRGKFY---------FEGRYDLVRFIKLAQQAGLYVTLRIG 118 (711)
Q Consensus 56 ~~~~W~~~l~~~ka~G~N~V~~-yv~-----W--n~hEp~~G~~d---------f~g~~dl~~fl~~a~~~gL~vilr~G 118 (711)
.+..|+ -++++|+++|-+ .++ | ....-..|-|| |....|++++++.|++.||+||+..=
T Consensus 76 ~~~~wd----yL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~gyDi~d~~Idp~~GT~eDf~~L~~~Ah~~G~~vi~DlV 151 (688)
T TIGR02455 76 DDALWK----ALSEIGVQGIHNGPIKLSGGIRGREFTPSIDGNFDRISFDIDPLLGSEEELIQLSRMAAAHNAITIDDII 151 (688)
T ss_pred ChHHHH----HHHHhCCCEEEeCcceecccccccCCCCCCCCCCCcccCccCcccCCHHHHHHHHHHHHHCCCEEEEEeC
Confidence 455564 688899999986 233 3 33333356666 33456999999999999999997632
Q ss_pred --------cccccccCCCCCCcee
Q 037832 119 --------PYACAEWNFGAFPAWL 134 (711)
Q Consensus 119 --------PyicaEw~~GG~P~WL 134 (711)
|+.-||.+.+-+|.|.
T Consensus 152 pnHTs~ghdF~lAr~~~~~Y~g~Y 175 (688)
T TIGR02455 152 PAHTGKGADFRLAELAHGDYPGLY 175 (688)
T ss_pred CCCCCCCcchHHHhhcCCCCCCce
Confidence 3778888888888888
No 131
>PRK09875 putative hydrolase; Provisional
Probab=48.49 E-value=93 Score=33.63 Aligned_cols=89 Identities=15% Similarity=0.069 Sum_probs=56.2
Q ss_pred EEEEcCCcEEECCEEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeeecchhHHHHHHHHH
Q 037832 28 TVTYDRKGLIINGQRRILFSGSIHYPRSTPEMWPDLLKKAKDGGLDIVDTYVFWNGHEPTRGKFYFEGRYDLVRFIKLAQ 107 (711)
Q Consensus 28 ~v~~d~~~~~i~G~p~~~~sg~~hy~r~~~~~W~~~l~~~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~ 107 (711)
.+++-+..++++..++. +......-..+.-...|+.+|++|.+||== ..+ ..-.+|...+.++++
T Consensus 7 G~tl~HEHl~~~~~~~~---~~~~~~l~~~~~~~~el~~~~~~Gg~tiVd--------~T~----~g~GRd~~~l~~is~ 71 (292)
T PRK09875 7 GYTLAHEHLHIDLSGFK---NNVDCRLDQYAFICQEMNDLMTRGVRNVIE--------MTN----RYMGRNAQFMLDVMR 71 (292)
T ss_pred CcceecCCeEecChhhc---CCcccccccHHHHHHHHHHHHHhCCCeEEe--------cCC----CccCcCHHHHHHHHH
Confidence 45566666666653211 111111113344456788999999988732 121 112359999999999
Q ss_pred HcCCEEEeecCcccccccCCCCCCceecc
Q 037832 108 QAGLYVTLRIGPYACAEWNFGAFPAWLKF 136 (711)
Q Consensus 108 ~~gL~vilr~GPyicaEw~~GG~P~WL~~ 136 (711)
+-|+.||...|-|.-.. +|.|+..
T Consensus 72 ~tgv~Iv~~TG~y~~~~-----~p~~~~~ 95 (292)
T PRK09875 72 ETGINVVACTGYYQDAF-----FPEHVAT 95 (292)
T ss_pred HhCCcEEEcCcCCCCcc-----CCHHHhc
Confidence 99999999999885322 6778764
No 132
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=47.97 E-value=2.4e+02 Score=30.27 Aligned_cols=120 Identities=14% Similarity=0.045 Sum_probs=80.0
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeeecchhHHHHHHHHHHcCCEEEeecCcccccccCCCCCCceec
Q 037832 56 TPEMWPDLLKKAKDGGLDIVDTYVFWNGHEPTRGKFYFEGRYDLVRFIKLAQQAGLYVTLRIGPYACAEWNFGAFPAWLK 135 (711)
Q Consensus 56 ~~~~W~~~l~~~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~vilr~GPyicaEw~~GG~P~WL~ 135 (711)
.-+..+.+|+.++.-+. .||+|- +.-.-|+.++.++.+.|++|+|.+ |+.
T Consensus 61 Sa~~~~sDLe~l~~~t~-~IR~Y~--------------sDCn~le~v~pAa~~~g~kv~lGi---------------w~t 110 (305)
T COG5309 61 SADQVASDLELLASYTH-SIRTYG--------------SDCNTLENVLPAAEASGFKVFLGI---------------WPT 110 (305)
T ss_pred CHHHHHhHHHHhccCCc-eEEEee--------------ccchhhhhhHHHHHhcCceEEEEE---------------eec
Confidence 45567889999999887 999974 112367788999999999999875 222
Q ss_pred ccCCcccccCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeecccccccchhcccCcchHHHHHHHHHHHHhcCCcc
Q 037832 136 FIPGMEFRIDNQPFELEMQKWVTKIVDMLKAEKLFETQGGPIILSQIENEFELVEWNLGDRARVYGQWAAHMAIGLNITV 215 (711)
Q Consensus 136 ~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~v 215 (711)
+|-.+ .+++ .++..+. +. ..--.|-.+-|.||-=..++.-...--+|+...|.+++.+|.++
T Consensus 111 ---------dd~~~--~~~~---til~ay~--~~--~~~d~v~~v~VGnEal~r~~~tasql~~~I~~vrsav~~agy~g 172 (305)
T COG5309 111 ---------DDIHD--AVEK---TILSAYL--PY--NGWDDVTTVTVGNEALNRNDLTASQLIEYIDDVRSAVKEAGYDG 172 (305)
T ss_pred ---------cchhh--hHHH---HHHHHHh--cc--CCCCceEEEEechhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCC
Confidence 12222 2222 3333344 21 22247888999999844322111244579999999999999999
Q ss_pred ceEecCCC
Q 037832 216 PWIMCKQA 223 (711)
Q Consensus 216 p~~~~~~~ 223 (711)
|+.+.++.
T Consensus 173 pV~T~dsw 180 (305)
T COG5309 173 PVTTVDSW 180 (305)
T ss_pred ceeecccc
Confidence 99887753
No 133
>COG3915 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.04 E-value=90 Score=29.93 Aligned_cols=47 Identities=23% Similarity=0.345 Sum_probs=35.1
Q ss_pred HHHHHHHCCCCEEEEcccCCCCCCCCceeeeecc--hhHHHHHHHHHHcCCEEEe
Q 037832 63 LLKKAKDGGLDIVDTYVFWNGHEPTRGKFYFEGR--YDLVRFIKLAQQAGLYVTL 115 (711)
Q Consensus 63 ~l~~~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~--~dl~~fl~~a~~~gL~vil 115 (711)
.++.+.+.+..|++|-.+|-. |.-.|+|. .+|-+.+. |+...+.|+.
T Consensus 39 t~qeLeal~~~T~ete~Pw~~-----gn~rf~Gvsls~Ll~~l~-ak~tslt~iA 87 (155)
T COG3915 39 TLQELEALPDETIETETPWTQ-----GNTRFKGVSLSALLAWLG-AKQTSLTVIA 87 (155)
T ss_pred cHHHHhcCCcceEEEecCccc-----CceeecceeHHHHHHHhh-ccCcceEEEE
Confidence 467788999999999999953 67778885 35666666 6666777763
No 134
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=46.92 E-value=95 Score=33.54 Aligned_cols=59 Identities=20% Similarity=0.220 Sum_probs=43.8
Q ss_pred CcccHHHHHHHHHHCCCCEEEEccc----CCCC-CCC--CceeeeecchhHHHHHHHHHHcCCEEEeec
Q 037832 56 TPEMWPDLLKKAKDGGLDIVDTYVF----WNGH-EPT--RGKFYFEGRYDLVRFIKLAQQAGLYVTLRI 117 (711)
Q Consensus 56 ~~~~W~~~l~~~ka~G~N~V~~yv~----Wn~h-Ep~--~G~~df~g~~dl~~fl~~a~~~gL~vilr~ 117 (711)
+.+.-++.++.|...|+|.+..|+- +..+ |-. +|.|. ..++.++++.|++.|+.||-.+
T Consensus 15 ~~~~lk~~id~ma~~k~N~l~lhl~D~f~~~~~p~~~~~~~~yT---~~ei~ei~~yA~~~gI~vIPei 80 (301)
T cd06565 15 KVSYLKKLLRLLALLGANGLLLYYEDTFPYEGEPEVGRMRGAYT---KEEIREIDDYAAELGIEVIPLI 80 (301)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEecceecCCCcccccCCCCcC---HHHHHHHHHHHHHcCCEEEecC
Confidence 4566789999999999999998752 3322 111 34443 3499999999999999999664
No 135
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=46.86 E-value=34 Score=37.66 Aligned_cols=74 Identities=14% Similarity=0.178 Sum_probs=53.4
Q ss_pred eeCCCC---CcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeeecch--hH--HHHHHHHHHcCCEEEeecCcccc
Q 037832 50 IHYPRS---TPEMWPDLLKKAKDGGLDIVDTYVFWNGHEPTRGKFYFEGRY--DL--VRFIKLAQQAGLYVTLRIGPYAC 122 (711)
Q Consensus 50 ~hy~r~---~~~~W~~~l~~~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~--dl--~~fl~~a~~~gL~vilr~GPyic 122 (711)
+|..|. +.+..++.++++++.||..=.+.+-+..+. ..+.|.|+..+ |. .++++..++.|++|++..=|+|+
T Consensus 13 ~~~s~~~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~-~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~v~ 91 (339)
T cd06602 13 FHLCRWGYKNVDEVKEVVENMRAAGIPLDVQWNDIDYMD-RRRDFTLDPVRFPGLKMPEFVDELHANGQHYVPILDPAIS 91 (339)
T ss_pred hHhcCCCCCCHHHHHHHHHHHHHhCCCcceEEECccccc-CccceecccccCCCccHHHHHHHHHHCCCEEEEEEeCccc
Confidence 455554 456678899999999987555444333332 24667766533 77 99999999999999999889887
Q ss_pred cc
Q 037832 123 AE 124 (711)
Q Consensus 123 aE 124 (711)
-+
T Consensus 92 ~~ 93 (339)
T cd06602 92 AN 93 (339)
T ss_pred cC
Confidence 53
No 136
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=46.75 E-value=31 Score=43.87 Aligned_cols=21 Identities=19% Similarity=0.341 Sum_probs=19.2
Q ss_pred hhHHHHHHHHHHcCCEEEeec
Q 037832 97 YDLVRFIKLAQQAGLYVTLRI 117 (711)
Q Consensus 97 ~dl~~fl~~a~~~gL~vilr~ 117 (711)
.++.++++.|+++||.|||..
T Consensus 555 ~EfK~LV~alH~~GI~VILDV 575 (1111)
T TIGR02102 555 AEFKNLINEIHKRGMGVILDV 575 (1111)
T ss_pred HHHHHHHHHHHHCCCEEEEec
Confidence 579999999999999999984
No 137
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=45.65 E-value=71 Score=34.24 Aligned_cols=106 Identities=15% Similarity=0.213 Sum_probs=68.0
Q ss_pred EEEEEEeeCCCCCccc-HH---HHHHHHHHCCCCEEEEcccCCCCCCCCceeeeecchhHHHHHHHHHHcCCEEEeecCc
Q 037832 44 ILFSGSIHYPRSTPEM-WP---DLLKKAKDGGLDIVDTYVFWNGHEPTRGKFYFEGRYDLVRFIKLAQQAGLYVTLRIGP 119 (711)
Q Consensus 44 ~~~sg~~hy~r~~~~~-W~---~~l~~~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~vilr~GP 119 (711)
+-+++..|+...+... .+ ++|++--++|.+.+-|-.+ ||.+ .+.+|++.|++.|+.+=+-||.
T Consensus 130 f~igva~~Pe~Hp~~~~~~~d~~~L~~Ki~aGA~f~iTQ~~----------Fd~~---~~~~f~~~~~~~gi~~PIi~GI 196 (281)
T TIGR00677 130 FCIGVAGYPEGHPEAESVELDLKYLKEKVDAGADFIITQLF----------YDVD---NFLKFVNDCRAIGIDCPIVPGI 196 (281)
T ss_pred eEEEEEECCCCCCCCCCHHHHHHHHHHHHHcCCCEeeccce----------ecHH---HHHHHHHHHHHcCCCCCEEeec
Confidence 4578888876643221 22 3455444699999999444 3333 6789999999997765445554
Q ss_pred ccc---------cccCCCCCCceecccCCcccc---cCChhHHHHHHHHHHHHHHHHHh
Q 037832 120 YAC---------AEWNFGAFPAWLKFIPGMEFR---IDNQPFELEMQKWVTKIVDMLKA 166 (711)
Q Consensus 120 yic---------aEw~~GG~P~WL~~~p~~~~R---~~d~~y~~~~~~~~~~l~~~l~~ 166 (711)
..+ ++|..--+|.|+.+ +++ .+++...+.--++..++++.+++
T Consensus 197 ~pi~s~~~~~~~~~~~Gi~vP~~l~~----~l~~~~~~~~~~~~~gi~~a~~~~~~l~~ 251 (281)
T TIGR00677 197 MPINNYASFLRRAKWSKTKIPQEIMS----RLEPIKDDDEAVRDYGIELIVEMCQKLLA 251 (281)
T ss_pred cccCCHHHHHHHHhcCCCCCCHHHHH----HHHhccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 333 57777778999976 222 23344456667777777777773
No 138
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=45.34 E-value=41 Score=36.59 Aligned_cols=67 Identities=13% Similarity=0.288 Sum_probs=47.8
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcc--cCCCCCC---CCceeeeecc--hhHHHHHHHHHHcCCEEEeecCcccc
Q 037832 56 TPEMWPDLLKKAKDGGLDIVDTYV--FWNGHEP---TRGKFYFEGR--YDLVRFIKLAQQAGLYVTLRIGPYAC 122 (711)
Q Consensus 56 ~~~~W~~~l~~~ka~G~N~V~~yv--~Wn~hEp---~~G~~df~g~--~dl~~fl~~a~~~gL~vilr~GPyic 122 (711)
..+..++.++++++.||-+=.+.+ .|--... .-|.|+|+-. -|..++++..+++|++|++..=|+|+
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~ 95 (317)
T cd06598 22 NWQEVDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVL 95 (317)
T ss_pred CHHHHHHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCccc
Confidence 456678899999999986544444 4532222 2356766533 38999999999999999998877774
No 139
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=44.84 E-value=75 Score=37.97 Aligned_cols=108 Identities=14% Similarity=0.170 Sum_probs=74.1
Q ss_pred EEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeeecchhHHHHHHHHHHcCCEEEeecCcc
Q 037832 41 QRRILFSGSIHYPRSTPEMWPDLLKKAKDGGLDIVDTYVFWNGHEPTRGKFYFEGRYDLVRFIKLAQQAGLYVTLRIGPY 120 (711)
Q Consensus 41 ~p~~~~sg~~hy~r~~~~~W~~~l~~~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~vilr~GPy 120 (711)
++-+.+++..|+.+.+.+.=-++|++-.++|.+.+-|-.+++. + .+.+|++.|++.++.||..+-|.
T Consensus 461 ~~~f~ig~A~~P~~~~~~~d~~~L~~Ki~aGAdf~iTQ~~fd~----------~---~~~~~~~~~~~~~vpIi~GImPi 527 (612)
T PRK08645 461 KTNFSIGGAFNPNVRNLDKEVKRLEKKIEAGADYFITQPVYDE----------E---LIEELLEATKHLGVPIFIGIMPL 527 (612)
T ss_pred CCceeeeEEeCCCCCChHHHHHHHHHHHHcCCCEEEecccCCH----------H---HHHHHHHHHhcCCCCEEEEeeec
Confidence 4557889999877766555556777777899999999665543 2 78888888887788888777663
Q ss_pred c--------ccccCCCCCCceecccCCcccc-cCC-hhHHHHHHHHHHHHHHHHH
Q 037832 121 A--------CAEWNFGAFPAWLKFIPGMEFR-IDN-QPFELEMQKWVTKIVDMLK 165 (711)
Q Consensus 121 i--------caEw~~GG~P~WL~~~p~~~~R-~~d-~~y~~~~~~~~~~l~~~l~ 165 (711)
. ..+|..--+|.|+.+. ++ ..| ...+++-.++..++++.++
T Consensus 528 ~s~k~~~~~~~~~~Gv~vP~~l~~~----l~~~~d~~~~~~~gv~~a~e~i~~l~ 578 (612)
T PRK08645 528 VSYRNAEFLHNEVPGITLPEEIRER----MRAVEDKEEAREEGVAIARELIDAAR 578 (612)
T ss_pred CCHHHHHHHHhCCCCCCCCHHHHHH----HHhcCCchHHHHHHHHHHHHHHHHHH
Confidence 2 2235445578888761 21 113 3566777777777777776
No 140
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=44.68 E-value=99 Score=34.22 Aligned_cols=59 Identities=14% Similarity=0.189 Sum_probs=44.9
Q ss_pred CcccHHHHHHHHHHCCCCEEEEccc----CCCCC----------------------------CCCceeeeecchhHHHHH
Q 037832 56 TPEMWPDLLKKAKDGGLDIVDTYVF----WNGHE----------------------------PTRGKFYFEGRYDLVRFI 103 (711)
Q Consensus 56 ~~~~W~~~l~~~ka~G~N~V~~yv~----Wn~hE----------------------------p~~G~~df~g~~dl~~fl 103 (711)
+.+..++.++.|...++|+...++- |.+-- +..|.|. ..++.+++
T Consensus 16 ~~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~~~YT---~~di~eiv 92 (357)
T cd06563 16 PVDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYGGFYT---QEEIREIV 92 (357)
T ss_pred CHHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccCceEC---HHHHHHHH
Confidence 6788899999999999999998763 43211 1123343 35999999
Q ss_pred HHHHHcCCEEEeec
Q 037832 104 KLAQQAGLYVTLRI 117 (711)
Q Consensus 104 ~~a~~~gL~vilr~ 117 (711)
+.|+++|+.||..+
T Consensus 93 ~yA~~rgI~VIPEI 106 (357)
T cd06563 93 AYAAERGITVIPEI 106 (357)
T ss_pred HHHHHcCCEEEEec
Confidence 99999999999763
No 141
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=44.54 E-value=30 Score=30.09 Aligned_cols=48 Identities=19% Similarity=0.220 Sum_probs=24.7
Q ss_pred ccCCceEeeccccc-ccchhccc----Cc-chHHHHHHHH---HHHHhcCCccceEe
Q 037832 172 TQGGPIILSQIENE-FELVEWNL----GD-RARVYGQWAA---HMAIGLNITVPWIM 219 (711)
Q Consensus 172 ~~gGpII~~QiENE-yg~~~~~~----~~-~~~~y~~~l~---~~~~~~g~~vp~~~ 219 (711)
++...|.+|+|-|| -++....+ +. ....|.+||+ +.+|+.+...|+..
T Consensus 6 ~~~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~~pvt~ 62 (88)
T PF12876_consen 6 GYDPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPSQPVTS 62 (88)
T ss_dssp T-GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TTS-EE-
T ss_pred cCCCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCCCcEEe
Confidence 34468999999999 55221111 11 1234455554 55667788888754
No 142
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=43.00 E-value=41 Score=36.93 Aligned_cols=74 Identities=9% Similarity=0.035 Sum_probs=52.1
Q ss_pred eeCCCC---CcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeeecc--hhHHHHHHHHHHcCCEEEeecCcccccc
Q 037832 50 IHYPRS---TPEMWPDLLKKAKDGGLDIVDTYVFWNGHEPTRGKFYFEGR--YDLVRFIKLAQQAGLYVTLRIGPYACAE 124 (711)
Q Consensus 50 ~hy~r~---~~~~W~~~l~~~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~--~dl~~fl~~a~~~gL~vilr~GPyicaE 124 (711)
+|..|. +.+.-++.++++++.||..=.+.+-+.+ ....+.|+|+-. -|..++++..++.|++|++..=|+|+.+
T Consensus 13 ~~~sr~~y~~~~ev~~~~~~~~~~~iP~d~i~lD~~~-~~~~~~f~~d~~~FPdp~~mi~~L~~~G~k~~~~~~P~v~~~ 91 (339)
T cd06603 13 YHQCRWNYKDQEDVKEVDAGFDEHDIPYDVIWLDIEH-TDGKRYFTWDKKKFPDPEKMQEKLASKGRKLVTIVDPHIKRD 91 (339)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHcCCCceEEEEChHH-hCCCCceEeCcccCCCHHHHHHHHHHCCCEEEEEecCceecC
Confidence 344443 4555678899999999875555443222 234566777643 2889999999999999999988888743
No 143
>PLN02877 alpha-amylase/limit dextrinase
Probab=42.54 E-value=42 Score=41.95 Aligned_cols=20 Identities=20% Similarity=0.494 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHcCCEEEeec
Q 037832 98 DLVRFIKLAQQAGLYVTLRI 117 (711)
Q Consensus 98 dl~~fl~~a~~~gL~vilr~ 117 (711)
++.++++.|+++||.|||..
T Consensus 467 efk~mV~~lH~~GI~VImDV 486 (970)
T PLN02877 467 EFRKMVQALNRIGLRVVLDV 486 (970)
T ss_pred HHHHHHHHHHHCCCEEEEEE
Confidence 59999999999999999884
No 144
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=41.93 E-value=53 Score=34.49 Aligned_cols=50 Identities=30% Similarity=0.288 Sum_probs=39.2
Q ss_pred HHHHHHHCCCCEEEEcccCCCCCCCCceeeeecchhHHHHHHHHHHcCCEEEeecC
Q 037832 63 LLKKAKDGGLDIVDTYVFWNGHEPTRGKFYFEGRYDLVRFIKLAQQAGLYVTLRIG 118 (711)
Q Consensus 63 ~l~~~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~vilr~G 118 (711)
...++|++|++.|-+ +|-|.+.- |. +....+.+=++.|.++||.+|++.|
T Consensus 76 S~~mL~d~G~~~vii----GHSERR~~-f~-Et~~~i~~Kv~~a~~~gl~pIvCiG 125 (242)
T cd00311 76 SAEMLKDAGAKYVII----GHSERRQY-FG-ETDEDVAKKVKAALEAGLTPILCVG 125 (242)
T ss_pred CHHHHHHcCCCEEEe----CcccccCc-CC-CCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 456799999999988 77666541 22 2356888889999999999999987
No 145
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=41.89 E-value=56 Score=35.51 Aligned_cols=66 Identities=15% Similarity=0.201 Sum_probs=46.3
Q ss_pred cccHHHHHHHHHHCCCCEEEEccc--CCCCC-CCCceeeeecc--hhHHHHHHHHHHcCCEEEeecCcccc
Q 037832 57 PEMWPDLLKKAKDGGLDIVDTYVF--WNGHE-PTRGKFYFEGR--YDLVRFIKLAQQAGLYVTLRIGPYAC 122 (711)
Q Consensus 57 ~~~W~~~l~~~ka~G~N~V~~yv~--Wn~hE-p~~G~~df~g~--~dl~~fl~~a~~~gL~vilr~GPyic 122 (711)
.+.-++.++++++.+|-+=-+.+- |...+ -....|+|.-. -|..++++..+++|++|++..=|+|+
T Consensus 28 q~~v~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~~i~P~i~ 98 (317)
T cd06599 28 QEALLEFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRLAPNIKPGLL 98 (317)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEEEEEeCCccc
Confidence 345678899999999876555443 33221 11234666432 38999999999999999999888874
No 146
>cd06418 GH25_BacA-like BacA is a bacterial lysin from Enterococcus faecalis that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. BacA is homologous to the YbfG and YkuG lysins of Bacillus subtilis. BacA has a C-terminal catalytic glycosyl hydrolase family 25 (GH25) domain and an N-terminal peptidoglycan-binding domain comprised of three alpha helices which is similar to a domain found in matrixins.
Probab=41.73 E-value=1.3e+02 Score=30.91 Aligned_cols=91 Identities=13% Similarity=0.073 Sum_probs=64.8
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeee-cchhHHHHHHHHHHcCCEEEeecCcccccccCCCCCCce
Q 037832 55 STPEMWPDLLKKAKDGGLDIVDTYVFWNGHEPTRGKFYFE-GRYDLVRFIKLAQQAGLYVTLRIGPYACAEWNFGAFPAW 133 (711)
Q Consensus 55 ~~~~~W~~~l~~~ka~G~N~V~~yv~Wn~hEp~~G~~df~-g~~dl~~fl~~a~~~gL~vilr~GPyicaEw~~GG~P~W 133 (711)
..+..++..++.++++|+..+-+|..... ....+..+ |..+-..-+.+|+++|+. + |-|-+
T Consensus 49 ~~k~lt~~e~~~i~~~Gl~~~pIyq~~~~---~~~~~~~~~G~~dA~~A~~~A~~lG~p----~-----------gs~IY 110 (212)
T cd06418 49 LSKNLTATELETITAAGLKVFPIYQGGGY---SLDYFGYEQGVKDARDAVAAARALGFP----P-----------GTIIY 110 (212)
T ss_pred CCCCCCHHHHHHHHHCCCEEEEEEECCCc---cccccCHHHHHHHHHHHHHHHHHcCCC----C-----------CCEEE
Confidence 36788999999999999999999987765 22233333 677889999999999982 2 33444
Q ss_pred ecccCCcccccCChhHHHHHHHHHHHHHHHHHhc
Q 037832 134 LKFIPGMEFRIDNQPFELEMQKWVTKIVDMLKAE 167 (711)
Q Consensus 134 L~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~ 167 (711)
+.-+.+. .+..+...+..||+.+.+.|+..
T Consensus 111 favD~d~----~~~~~~~~v~~Y~~a~~~~l~~~ 140 (212)
T cd06418 111 FAVDFDA----LDDEVTEVILPYFRGWNDALHEA 140 (212)
T ss_pred EEeecCC----CcchhHHHHHHHHHHHHHHHHhc
Confidence 4322221 23347788889999998888843
No 147
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=41.31 E-value=34 Score=35.81 Aligned_cols=55 Identities=15% Similarity=0.031 Sum_probs=37.6
Q ss_pred cHHHHHHHHHHCCCCEEEEcccCCCCCCC----CceeeeecchhHHHHHHHHHHcCCEEEeec
Q 037832 59 MWPDLLKKAKDGGLDIVDTYVFWNGHEPT----RGKFYFEGRYDLVRFIKLAQQAGLYVTLRI 117 (711)
Q Consensus 59 ~W~~~l~~~ka~G~N~V~~yv~Wn~hEp~----~G~~df~g~~dl~~fl~~a~~~gL~vilr~ 117 (711)
.+++.++.++++|..+|.+. ..+... .-.+... ...|.++.++|+++|+.+.+.+
T Consensus 91 ~~~~~i~~a~~lGa~~i~~~---~~~~~~~~~~~~~~~~~-~~~l~~l~~~a~~~gv~l~iE~ 149 (275)
T PRK09856 91 MIKLAMDMAKEMNAGYTLIS---AAHAGYLTPPNVIWGRL-AENLSELCEYAENIGMDLILEP 149 (275)
T ss_pred HHHHHHHHHHHhCCCEEEEc---CCCCCCCCCHHHHHHHH-HHHHHHHHHHHHHcCCEEEEec
Confidence 45677889999999999763 222211 1112211 1368889999999999999997
No 148
>PLN02826 dihydroorotate dehydrogenase
Probab=41.30 E-value=3.9e+02 Score=30.38 Aligned_cols=59 Identities=17% Similarity=0.232 Sum_probs=38.1
Q ss_pred EEEEEeeCCCCCcccHHHHHHHHHHCC--CCEEEEcccCCCCCC-CCceeeeecchhHHHHHHHHH
Q 037832 45 LFSGSIHYPRSTPEMWPDLLKKAKDGG--LDIVDTYVFWNGHEP-TRGKFYFEGRYDLVRFIKLAQ 107 (711)
Q Consensus 45 ~~sg~~hy~r~~~~~W~~~l~~~ka~G--~N~V~~yv~Wn~hEp-~~G~~df~g~~dl~~fl~~a~ 107 (711)
+++.++.-...+.+.|+|-.+.++.++ .+.+++ |+.-| .||.=+......+.++++.++
T Consensus 188 ~lgvnIg~nk~~~~~~~Dy~~~~~~~~~~aDylel----NiScPNtpglr~lq~~~~l~~ll~~V~ 249 (409)
T PLN02826 188 ILGVNLGKNKTSEDAAADYVQGVRALSQYADYLVI----NVSSPNTPGLRKLQGRKQLKDLLKKVL 249 (409)
T ss_pred eEEEEeccCCCCcccHHHHHHHHHHHhhhCCEEEE----ECCCCCCCCcccccChHHHHHHHHHHH
Confidence 577777655555556778777777776 788888 76655 355433444446777777664
No 149
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=41.07 E-value=51 Score=36.18 Aligned_cols=62 Identities=13% Similarity=0.075 Sum_probs=46.1
Q ss_pred CcccHHHHHHHHHHCCCCEEEEccc----CCCCCC------CCceee--------eecchhHHHHHHHHHHcCCEEEeec
Q 037832 56 TPEMWPDLLKKAKDGGLDIVDTYVF----WNGHEP------TRGKFY--------FEGRYDLVRFIKLAQQAGLYVTLRI 117 (711)
Q Consensus 56 ~~~~W~~~l~~~ka~G~N~V~~yv~----Wn~hEp------~~G~~d--------f~g~~dl~~fl~~a~~~gL~vilr~ 117 (711)
+.+..++.++.|...++|++..++- |.+.-+ ..|.+. |=...++.++++.|++.|+.||-.+
T Consensus 16 ~~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~di~elv~yA~~rgI~vIPEi 95 (329)
T cd06568 16 TVAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQEDYKDIVAYAAERHITVVPEI 95 (329)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCCHHHHHHHHHHHHHcCCEEEEec
Confidence 7788899999999999999998873 654322 123221 1124599999999999999999663
No 150
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=40.93 E-value=46 Score=36.20 Aligned_cols=72 Identities=8% Similarity=0.094 Sum_probs=50.9
Q ss_pred eeCCCC---CcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeeecc--hhHHHHHHHHHHcCCEEEeecCcccc
Q 037832 50 IHYPRS---TPEMWPDLLKKAKDGGLDIVDTYVFWNGHEPTRGKFYFEGR--YDLVRFIKLAQQAGLYVTLRIGPYAC 122 (711)
Q Consensus 50 ~hy~r~---~~~~W~~~l~~~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~--~dl~~fl~~a~~~gL~vilr~GPyic 122 (711)
+|..|. ..+..++.++++++.+|-.=.+.+-+.... ..+.|+|+.. -|..++++..++.|++|++..=|+|.
T Consensus 13 ~~~sr~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~i~ 89 (317)
T cd06600 13 YHISRYSYYPQDKVVEVVDIMQKEGFPYDVVFLDIHYMD-SYRLFTWDPYRFPEPKKLIDELHKRNVKLVTIVDPGIR 89 (317)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHcCCCcceEEEChhhhC-CCCceeechhcCCCHHHHHHHHHHCCCEEEEEeecccc
Confidence 344554 556678899999999987544443322222 3456777543 38999999999999999988888875
No 151
>PRK09267 flavodoxin FldA; Validated
Probab=39.88 E-value=1.8e+02 Score=28.19 Aligned_cols=74 Identities=9% Similarity=0.078 Sum_probs=48.2
Q ss_pred ECCEEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeeecchhHHHHHHHHHHcCCEEE
Q 037832 38 INGQRRILFSGSIHYPRSTPEMWPDLLKKAKDGGLDIVDTYVFWNGHEPTRGKFYFEGRYDLVRFIKLAQQAGLYVT 114 (711)
Q Consensus 38 i~G~p~~~~sg~~hy~r~~~~~W~~~l~~~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~vi 114 (711)
+..-..++++...|....++..|.+-+.+++...++-..+.+|= ......-.-.| ..-+..+-+++++.|..++
T Consensus 44 l~~~d~vi~g~pt~~~G~~~~~~~~fl~~~~~~~l~~k~vaifg-~g~~~~~~~~~--~~~~~~l~~~l~~~g~~~v 117 (169)
T PRK09267 44 FEAYDLLILGIPTWGYGELQCDWDDFLPELEEIDFSGKKVALFG-LGDQEDYAEYF--CDAMGTLYDIVEPRGATIV 117 (169)
T ss_pred HhhCCEEEEEecCcCCCCCCHHHHHHHHHHhcCCCCCCEEEEEe-cCCCCcchHHH--HHHHHHHHHHHHHCCCEEE
Confidence 44556789999999877778889988888877777766666662 21111100111 2245667777888897665
No 152
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=39.79 E-value=98 Score=33.20 Aligned_cols=114 Identities=23% Similarity=0.319 Sum_probs=66.4
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeeec---chhHHHHHHHHHHcCCEEEeecCcccccccCCCCCCc
Q 037832 56 TPEMWPDLLKKAKDGGLDIVDTYVFWNGHEPTRGKFYFEG---RYDLVRFIKLAQQAGLYVTLRIGPYACAEWNFGAFPA 132 (711)
Q Consensus 56 ~~~~W~~~l~~~ka~G~N~V~~yv~Wn~hEp~~G~~df~g---~~dl~~fl~~a~~~gL~vilr~GPyicaEw~~GG~P~ 132 (711)
.-+..++-+.-+.++|+..|-+=.-|...+ ....+||+. ..||.++++-|++.|..|+|+. -|..||-..
T Consensus 30 ~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~-~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~------~~~~~~~~~ 102 (273)
T PF10566_consen 30 TTETQKRYIDFAAEMGIEYVLVDAGWYGWE-KDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWY------HSETGGNVA 102 (273)
T ss_dssp SHHHHHHHHHHHHHTT-SEEEEBTTCCGS---TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEE------ECCHTTBHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEecccccccc-ccccccccccCCccCHHHHHHHHHHcCCCEEEEE------eCCcchhhH
Confidence 556678889999999999999988898622 233566653 4699999999999999888874 233333211
Q ss_pred eecc-------------cCCcccccCChhHHHHHHHHHHHHHHHHHhcccccccCCce
Q 037832 133 WLKF-------------IPGMEFRIDNQPFELEMQKWVTKIVDMLKAEKLFETQGGPI 177 (711)
Q Consensus 133 WL~~-------------~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpI 177 (711)
=|.+ +.++++=.-+. --+.+-+|+.+|++.-++|+|+..=+|++
T Consensus 103 ~~~~~~~~~f~~~~~~Gv~GvKidF~~~-d~Q~~v~~y~~i~~~AA~~~LmvnfHg~~ 159 (273)
T PF10566_consen 103 NLEKQLDEAFKLYAKWGVKGVKIDFMDR-DDQEMVNWYEDILEDAAEYKLMVNFHGAT 159 (273)
T ss_dssp HHHCCHHHHHHHHHHCTEEEEEEE--SS-TSHHHHHHHHHHHHHHHHTT-EEEETTS-
T ss_pred hHHHHHHHHHHHHHHcCCCEEeeCcCCC-CCHHHHHHHHHHHHHHHHcCcEEEecCCc
Confidence 1111 11221100000 11456678999999999888766655554
No 153
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=39.77 E-value=1.4e+02 Score=27.70 Aligned_cols=71 Identities=14% Similarity=0.186 Sum_probs=42.8
Q ss_pred eEEEEEEecCCCCCCcccCCCCCeeeecccceEEEEEECCEEEEEEecccC-----CCceEEEeeeeecCC-ccEEEEEE
Q 037832 471 YLWYTTEVFIDPSEGFLYNGQDPLLNIMSAGHGLNVYVNDQLQGLHHGSLE-----TPQVTFSKKVKLRGG-VNKISLQS 544 (711)
Q Consensus 471 Yl~Y~t~v~~~~~~~~~~~g~~~~L~i~~~~D~~~VfVng~~vG~~~~~~~-----~~~~~~~~~~~l~~g-~n~L~ILv 544 (711)
.+.|++.|..+.++.. .+.+. ..|.+.+||||+.+-...+... .........+.+.+| .+.|.|..
T Consensus 47 ~~~~~G~~~~~~~G~y-------~f~~~-~~d~~~l~idg~~vid~~~~~~~~~~~~~~~~~~~~v~l~~g~~y~i~i~y 118 (145)
T PF07691_consen 47 SVRWTGYFKPPETGTY-------TFSLT-SDDGARLWIDGKLVIDNWGNQGGGFFNSGPSSTSGTVTLEAGGKYPIRIEY 118 (145)
T ss_dssp EEEEEEEEEESSSEEE-------EEEEE-ESSEEEEEETTEEEEECSCTTTSTTTTTSBCCEEEEEEE-TT-EEEEEEEE
T ss_pred EEEEEEEEecccCceE-------EEEEE-ecccEEEEECCEEEEcCCccccccccccccceEEEEEEeeCCeeEEEEEEE
Confidence 5568888877655521 22333 6788999999999987765321 001222334556655 68888876
Q ss_pred ecCCC
Q 037832 545 VAVGL 549 (711)
Q Consensus 545 en~Gr 549 (711)
.+.+.
T Consensus 119 ~~~~~ 123 (145)
T PF07691_consen 119 FNRGG 123 (145)
T ss_dssp EECSC
T ss_pred EECCC
Confidence 55543
No 154
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=38.51 E-value=46 Score=37.79 Aligned_cols=53 Identities=23% Similarity=0.310 Sum_probs=39.9
Q ss_pred HHHHHHHHCCCCEEEE-cccCC---CCC--------CCCceeeeecchhHHHHHHHHHHcCCEEEeec
Q 037832 62 DLLKKAKDGGLDIVDT-YVFWN---GHE--------PTRGKFYFEGRYDLVRFIKLAQQAGLYVTLRI 117 (711)
Q Consensus 62 ~~l~~~ka~G~N~V~~-yv~Wn---~hE--------p~~G~~df~g~~dl~~fl~~a~~~gL~vilr~ 117 (711)
+.|.-+|++|+++|-+ +++=+ .|. -.| .|.+..|+.++++.|++.||+||+-.
T Consensus 33 ~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~---~~Gt~~d~~~li~~~H~~gi~vi~D~ 97 (505)
T COG0366 33 EKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDP---HFGTEEDFKELVEEAHKRGIKVILDL 97 (505)
T ss_pred HhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCc---ccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 7899999999999965 33311 111 112 57778899999999999999999773
No 155
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=38.23 E-value=68 Score=34.43 Aligned_cols=66 Identities=17% Similarity=0.289 Sum_probs=46.8
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcc--cCCCCC------CCCceeeeecc--hhHHHHHHHHHHcCCEEEeecCccc
Q 037832 56 TPEMWPDLLKKAKDGGLDIVDTYV--FWNGHE------PTRGKFYFEGR--YDLVRFIKLAQQAGLYVTLRIGPYA 121 (711)
Q Consensus 56 ~~~~W~~~l~~~ka~G~N~V~~yv--~Wn~hE------p~~G~~df~g~--~dl~~fl~~a~~~gL~vilr~GPyi 121 (711)
+.+.-++.++++|+.||-+=-+++ -|.... ..-+.|.|+.. -|..++++..++.|++|++..=|+|
T Consensus 23 s~~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~v~P~~ 98 (292)
T cd06595 23 SDEEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLNLHPAD 98 (292)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEEeCCCc
Confidence 556678899999999987554444 343321 12356777643 3899999999999999998875543
No 156
>PRK14565 triosephosphate isomerase; Provisional
Probab=38.07 E-value=54 Score=34.37 Aligned_cols=49 Identities=22% Similarity=0.186 Sum_probs=35.3
Q ss_pred HHHHHHHCCCCEEEEcccCCCCCCCCceeeee-cchhHHHHHHHHHHcCCEEEeecC
Q 037832 63 LLKKAKDGGLDIVDTYVFWNGHEPTRGKFYFE-GRYDLVRFIKLAQQAGLYVTLRIG 118 (711)
Q Consensus 63 ~l~~~ka~G~N~V~~yv~Wn~hEp~~G~~df~-g~~dl~~fl~~a~~~gL~vilr~G 118 (711)
..+++|++|++.|-+ .|-|.+. .|. .+..+.+=++.|.++||.+|++.|
T Consensus 77 S~~mLkd~G~~~vii----GHSERR~---~f~Etd~~V~~Kv~~al~~gl~pIvCiG 126 (237)
T PRK14565 77 SAKMLKECGCSYVIL----GHSERRS---TFHETDSDIRLKAESAIESGLIPIICVG 126 (237)
T ss_pred CHHHHHHcCCCEEEE----CcccccC---cCCcCHHHHHHHHHHHHHCCCEEEEEcC
Confidence 456899999999888 7777664 232 122333334889999999999987
No 157
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=37.75 E-value=51 Score=41.11 Aligned_cols=21 Identities=14% Similarity=0.411 Sum_probs=18.5
Q ss_pred hhHHHHHHHHHHcCCEEEeec
Q 037832 97 YDLVRFIKLAQQAGLYVTLRI 117 (711)
Q Consensus 97 ~dl~~fl~~a~~~gL~vilr~ 117 (711)
.++.++++.|+++||.|||..
T Consensus 404 ~Efk~mV~alH~~Gi~VIlDV 424 (898)
T TIGR02103 404 KEFREMVQALNKTGLNVVMDV 424 (898)
T ss_pred HHHHHHHHHHHHCCCEEEEEe
Confidence 368889999999999999884
No 158
>PLN02784 alpha-amylase
Probab=37.20 E-value=70 Score=39.52 Aligned_cols=57 Identities=12% Similarity=-0.006 Sum_probs=39.6
Q ss_pred HHHHHHHHHCCCCEEEEcccCCCCCCC-Cceee-------eecchhHHHHHHHHHHcCCEEEeec
Q 037832 61 PDLLKKAKDGGLDIVDTYVFWNGHEPT-RGKFY-------FEGRYDLVRFIKLAQQAGLYVTLRI 117 (711)
Q Consensus 61 ~~~l~~~ka~G~N~V~~yv~Wn~hEp~-~G~~d-------f~g~~dl~~fl~~a~~~gL~vilr~ 117 (711)
.+++.-++++|+++|-+.=+-....+. =..+| |....+|.++++.|+++||.||+..
T Consensus 524 ~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDi 588 (894)
T PLN02784 524 GEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDA 588 (894)
T ss_pred HHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 467888999999999985332211111 01122 3345699999999999999999884
No 159
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=37.17 E-value=94 Score=33.55 Aligned_cols=60 Identities=15% Similarity=0.168 Sum_probs=46.5
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEccc----CCCCCC----------------CCceeeeecchhHHHHHHHHHHcCCEEE
Q 037832 55 STPEMWPDLLKKAKDGGLDIVDTYVF----WNGHEP----------------TRGKFYFEGRYDLVRFIKLAQQAGLYVT 114 (711)
Q Consensus 55 ~~~~~W~~~l~~~ka~G~N~V~~yv~----Wn~hEp----------------~~G~~df~g~~dl~~fl~~a~~~gL~vi 114 (711)
.+.+..++.++.|...++|+++.++- |.+--+ ..|.|.- .++.++++.|++.|+.||
T Consensus 13 ~~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~---~di~elv~yA~~rgI~vi 89 (303)
T cd02742 13 LSVESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTY---AQLKDIIEYAAARGIEVI 89 (303)
T ss_pred cCHHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECH---HHHHHHHHHHHHcCCEEE
Confidence 36778899999999999999999876 754311 1233433 499999999999999999
Q ss_pred eec
Q 037832 115 LRI 117 (711)
Q Consensus 115 lr~ 117 (711)
..+
T Consensus 90 PEi 92 (303)
T cd02742 90 PEI 92 (303)
T ss_pred Eec
Confidence 663
No 160
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=35.95 E-value=1.9e+02 Score=31.85 Aligned_cols=72 Identities=13% Similarity=0.114 Sum_probs=53.3
Q ss_pred eeCCCC---CcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeeecc--hhHHHHHHHHHHcCCEEEeecCcccc
Q 037832 50 IHYPRS---TPEMWPDLLKKAKDGGLDIVDTYVFWNGHEPTRGKFYFEGR--YDLVRFIKLAQQAGLYVTLRIGPYAC 122 (711)
Q Consensus 50 ~hy~r~---~~~~W~~~l~~~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~--~dl~~fl~~a~~~gL~vilr~GPyic 122 (711)
+|..|. +.+..++.++++++.+|-.=.+++-|.++. ..+.|.|+.. -|..++++..++.|+++++..=|+|.
T Consensus 13 ~~qsr~~Y~~~~ev~~v~~~~r~~~IP~D~i~lDidy~~-~~~~Ft~d~~~FPdp~~mv~~L~~~G~klv~~i~P~i~ 89 (332)
T cd06601 13 FHQGCYGYSNRSDLEEVVEGYRDNNIPLDGLHVDVDFQD-NYRTFTTNGGGFPNPKEMFDNLHNKGLKCSTNITPVIS 89 (332)
T ss_pred hhhCCCCCCCHHHHHHHHHHHHHcCCCCceEEEcCchhc-CCCceeecCCCCCCHHHHHHHHHHCCCeEEEEecCcee
Confidence 455554 566678899999999986555555554443 3466777643 37899999999999999988888886
No 161
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=35.78 E-value=38 Score=33.15 Aligned_cols=63 Identities=14% Similarity=0.072 Sum_probs=42.0
Q ss_pred cccHHHHHHHHHHCCCCEEEEcccC-CCCCCC--CceeeeecchhHHHHHHHHHHcCCEEEeecCcc
Q 037832 57 PEMWPDLLKKAKDGGLDIVDTYVFW-NGHEPT--RGKFYFEGRYDLVRFIKLAQQAGLYVTLRIGPY 120 (711)
Q Consensus 57 ~~~W~~~l~~~ka~G~N~V~~yv~W-n~hEp~--~G~~df~g~~dl~~fl~~a~~~gL~vilr~GPy 120 (711)
.+..++.++.++++|+..|.+...+ +..... +..++.- ...+.++.+.|+++|+.+.+.+-|+
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~-~~~l~~l~~~a~~~gv~i~lE~~~~ 135 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERL-AENLRELAEIAEEYGVRIALENHPG 135 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHH-HHHHHHHHHHHHHHTSEEEEE-SSS
T ss_pred HHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHH-HHHHHHHHhhhhhhcceEEEecccC
Confidence 3566788999999999998886552 122211 1122211 2367888899999999999998653
No 162
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=35.65 E-value=1.7e+02 Score=32.37 Aligned_cols=62 Identities=13% Similarity=0.201 Sum_probs=45.9
Q ss_pred CcccHHHHHHHHHHCCCCEEEEccc----CCCCCC------CCceeeee---cchhHHHHHHHHHHcCCEEEeec
Q 037832 56 TPEMWPDLLKKAKDGGLDIVDTYVF----WNGHEP------TRGKFYFE---GRYDLVRFIKLAQQAGLYVTLRI 117 (711)
Q Consensus 56 ~~~~W~~~l~~~ka~G~N~V~~yv~----Wn~hEp------~~G~~df~---g~~dl~~fl~~a~~~gL~vilr~ 117 (711)
+.+..++.++.|....+|+...++- |.+--+ +.|.|.-. ...++.++++.|++.|+.||..+
T Consensus 16 ~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt~~ga~~~~~~YT~~di~eiv~yA~~rgI~vIPEI 90 (348)
T cd06562 16 SVDSIKRTIDAMAYNKLNVLHWHITDSQSFPLESPSYPELSKKGAYSPSEVYTPEDVKEIVEYARLRGIRVIPEI 90 (348)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEeEEcCCCceEeeCCCchhhhccCcCCCceECHHHHHHHHHHHHHcCCEEEEec
Confidence 5788899999999999999998763 554322 12332211 23599999999999999999763
No 163
>PLN02429 triosephosphate isomerase
Probab=35.50 E-value=60 Score=35.47 Aligned_cols=46 Identities=28% Similarity=0.224 Sum_probs=34.4
Q ss_pred HHHHHHHCCCCEEEEcccCCCCCCCCceeeeecchhHHHHHHH----HHHcCCEEEeecC
Q 037832 63 LLKKAKDGGLDIVDTYVFWNGHEPTRGKFYFEGRYDLVRFIKL----AQQAGLYVTLRIG 118 (711)
Q Consensus 63 ~l~~~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~----a~~~gL~vilr~G 118 (711)
-.+++|++|++.|-+ +|-|.+. . |. ..++++.. |.++||.+|++.|
T Consensus 139 Sa~mLkd~Gv~~Vii----GHSERR~-~--f~---Etd~~V~~Kv~~al~~GL~pIvCIG 188 (315)
T PLN02429 139 SVEQLKDLGCKWVIL----GHSERRH-V--IG---EKDEFIGKKAAYALSEGLGVIACIG 188 (315)
T ss_pred CHHHHHHcCCCEEEe----CccccCC-C--CC---cCHHHHHHHHHHHHHCcCEEEEEcC
Confidence 345799999998888 7777654 2 33 33455555 9999999999987
No 164
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=35.47 E-value=42 Score=37.09 Aligned_cols=62 Identities=13% Similarity=0.067 Sum_probs=44.3
Q ss_pred CCCcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeeecchhHHHHHHHHHHcCCEEEeec
Q 037832 54 RSTPEMWPDLLKKAKDGGLDIVDTYVFWNGHEPTRGKFYFEGRYDLVRFIKLAQQAGLYVTLRI 117 (711)
Q Consensus 54 r~~~~~W~~~l~~~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~vilr~ 117 (711)
|.+...-....+.++++|.++|.+.++|.-.++.+ -+-.-..+|.++.+.|+++||-+++.+
T Consensus 102 r~~~~~~~~sve~a~~~GAdAVk~lv~~~~d~~~~--~~~~~~~~l~rv~~ec~~~giPlllE~ 163 (340)
T PRK12858 102 RLPDLLDNWSVRRIKEAGADAVKLLLYYRPDEDDA--INDRKHAFVERVGAECRANDIPFFLEP 163 (340)
T ss_pred CCccccccccHHHHHHcCCCEEEEEEEeCCCcchH--HHHHHHHHHHHHHHHHHHcCCceEEEE
Confidence 54444433356789999999999999999553310 001123489999999999999998874
No 165
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=35.34 E-value=67 Score=35.22 Aligned_cols=72 Identities=15% Similarity=0.135 Sum_probs=49.9
Q ss_pred eeCCCC---CcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeeecc--hhHHHHHHHHHHcCCEEEeecCcccc
Q 037832 50 IHYPRS---TPEMWPDLLKKAKDGGLDIVDTYVFWNGHEPTRGKFYFEGR--YDLVRFIKLAQQAGLYVTLRIGPYAC 122 (711)
Q Consensus 50 ~hy~r~---~~~~W~~~l~~~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~--~dl~~fl~~a~~~gL~vilr~GPyic 122 (711)
+|..|. +.+..++.++++++.||-.=.+.+-+.+.. ..+.|+|+-. -|..++++..++.|+++++..=|+|+
T Consensus 13 ~~~s~~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~f~~d~~~fPdp~~m~~~l~~~g~~~~~~~~P~v~ 89 (339)
T cd06604 13 YQQSRWSYYPEEEVREIADEFRERDIPCDAIYLDIDYMD-GYRVFTWDKERFPDPKELIKELHEQGFKVVTIIDPGVK 89 (339)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHhCCCcceEEECchhhC-CCCceeeccccCCCHHHHHHHHHHCCCEEEEEEeCcee
Confidence 455553 455668899999999987543333322222 3455666543 37899999999999999988878775
No 166
>PRK07534 methionine synthase I; Validated
Probab=35.01 E-value=4.2e+02 Score=29.17 Aligned_cols=73 Identities=8% Similarity=-0.062 Sum_probs=42.5
Q ss_pred HHHHHHHHHc-CCEEEeecCcccccccCCCCCCceecccCCcccccCChh-HHHHHHHHHHHHHHHHHhcccccccCCce
Q 037832 100 VRFIKLAQQA-GLYVTLRIGPYACAEWNFGAFPAWLKFIPGMEFRIDNQP-FELEMQKWVTKIVDMLKAEKLFETQGGPI 177 (711)
Q Consensus 100 ~~fl~~a~~~-gL~vilr~GPyicaEw~~GG~P~WL~~~p~~~~R~~d~~-y~~~~~~~~~~l~~~l~~~~~~~~~gGpI 177 (711)
..++++.... .+.+++.| |.|.|.|... .... ..+|. |.+.+++|. ..|=.|
T Consensus 221 ~~l~~~~~~~~~~pl~vyP---------NaG~p~~~~~--~~~~-~~~p~~~~~~~~~~~--------------~~Ga~i 274 (336)
T PRK07534 221 RTVLGFTAQGPERPIIAKG---------NAGIPKYVDG--HIHY-DGTPELMAEYAVLAR--------------DAGARI 274 (336)
T ss_pred HHHHHHHHhcCCCeEEEEc---------CCCCcccCCC--cccc-CCCHHHHHHHHHHHH--------------HcCCcE
Confidence 4555554443 56777887 6788988642 2222 23443 334444442 124467
Q ss_pred EeecccccccchhcccCcchHHHHHHHHHHHHh
Q 037832 178 ILSQIENEFELVEWNLGDRARVYGQWAAHMAIG 210 (711)
Q Consensus 178 I~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~ 210 (711)
|+ |+ || ...+|++.|++.++.
T Consensus 275 IG-------GC----CG-TtP~hI~~la~~l~~ 295 (336)
T PRK07534 275 IG-------GC----CG-TMPEHLAAMRAALDA 295 (336)
T ss_pred Ee-------ee----cC-CCHHHHHHHHHHHcc
Confidence 64 43 45 778999999998854
No 167
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=34.72 E-value=1.7e+02 Score=30.46 Aligned_cols=96 Identities=14% Similarity=0.068 Sum_probs=54.5
Q ss_pred Cceeeee-cchhHHHHHHHHHHcCCEEEeecCcccccccCCCCCCceecccCCcccccCChhHHHHHHHHHHHHHHHHHh
Q 037832 88 RGKFYFE-GRYDLVRFIKLAQQAGLYVTLRIGPYACAEWNFGAFPAWLKFIPGMEFRIDNQPFELEMQKWVTKIVDMLKA 166 (711)
Q Consensus 88 ~G~~df~-g~~dl~~fl~~a~~~gL~vilr~GPyicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~ 166 (711)
.|...+. ...++..+++.|++.|++|++..|= |..+.+-. + ..++. .-+++.+.|++.+++
T Consensus 36 ~G~l~~~~~~~~~~~~~~~~~~~~~kvl~sigg-----~~~~~~~~-~---------~~~~~---~r~~fi~~lv~~~~~ 97 (253)
T cd06545 36 NGTLNANPVRSELNSVVNAAHAHNVKILISLAG-----GSPPEFTA-A---------LNDPA---KRKALVDKIINYVVS 97 (253)
T ss_pred CCeEEecCcHHHHHHHHHHHHhCCCEEEEEEcC-----CCCCcchh-h---------hcCHH---HHHHHHHHHHHHHHH
Confidence 4566654 3357889999999999999999861 22211100 1 12333 234678888888886
Q ss_pred cccccccCCceEeecccccccchhcccCcchHHHHHHHHHHHHhcC
Q 037832 167 EKLFETQGGPIILSQIENEFELVEWNLGDRARVYGQWAAHMAIGLN 212 (711)
Q Consensus 167 ~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g 212 (711)
+.+ =++.|+=|+.... ...-..+++.|++.+++.|
T Consensus 98 ~~~--------DGIdiDwE~~~~~---~~~~~~fv~~Lr~~l~~~~ 132 (253)
T cd06545 98 YNL--------DGIDVDLEGPDVT---FGDYLVFIRALYAALKKEG 132 (253)
T ss_pred hCC--------CceeEEeeccCcc---HhHHHHHHHHHHHHHhhcC
Confidence 554 2345566664321 1112235555666665444
No 168
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=33.91 E-value=2.4e+02 Score=29.08 Aligned_cols=44 Identities=18% Similarity=0.248 Sum_probs=30.8
Q ss_pred HHHHHHHHCCCCEEEEcccCCCCCCCCceeeeecchhHHHHHHHHHHcCCEEE
Q 037832 62 DLLKKAKDGGLDIVDTYVFWNGHEPTRGKFYFEGRYDLVRFIKLAQQAGLYVT 114 (711)
Q Consensus 62 ~~l~~~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~vi 114 (711)
+.++.|+++|++++.+- - =| .|||. ..-|.+.++.+++.|+..+
T Consensus 64 ~~~~~l~~~G~d~~~la--N-NH-----~fD~G-~~gl~~t~~~l~~a~i~~~ 107 (239)
T smart00854 64 ENAAALKAAGFDVVSLA--N-NH-----SLDYG-EEGLLDTLAALDAAGIAHV 107 (239)
T ss_pred HHHHHHHHhCCCEEEec--c-Cc-----ccccc-hHHHHHHHHHHHHCCCCEe
Confidence 46889999999999871 1 23 34443 3457788888888888654
No 169
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=33.62 E-value=80 Score=34.42 Aligned_cols=63 Identities=11% Similarity=0.100 Sum_probs=46.5
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEcc----cCCCCC---CC---Cceee-eecchhHHHHHHHHHHcCCEEEeec
Q 037832 55 STPEMWPDLLKKAKDGGLDIVDTYV----FWNGHE---PT---RGKFY-FEGRYDLVRFIKLAQQAGLYVTLRI 117 (711)
Q Consensus 55 ~~~~~W~~~l~~~ka~G~N~V~~yv----~Wn~hE---p~---~G~~d-f~g~~dl~~fl~~a~~~gL~vilr~ 117 (711)
.+.+..++.|+.|...++|+...++ .|.+-- |+ .|.+. |=...++.++++.|++.|+.||..+
T Consensus 15 ~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~~~~yT~~di~elv~yA~~rgI~vIPEI 88 (311)
T cd06570 15 IPVAVIKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASDGLYYTQEQIREVVAYARDRGIRVVPEI 88 (311)
T ss_pred cCHHHHHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCCCCccCHHHHHHHHHHHHHcCCEEEEee
Confidence 4688899999999999999999987 475421 11 22211 1123599999999999999999663
No 170
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=33.22 E-value=85 Score=33.22 Aligned_cols=49 Identities=29% Similarity=0.280 Sum_probs=37.1
Q ss_pred HHHHHHHCCCCEEEEcccCCCCCCCCceeeee-cchhHHHHHHHHHHcCCEEEeecC
Q 037832 63 LLKKAKDGGLDIVDTYVFWNGHEPTRGKFYFE-GRYDLVRFIKLAQQAGLYVTLRIG 118 (711)
Q Consensus 63 ~l~~~ka~G~N~V~~yv~Wn~hEp~~G~~df~-g~~dl~~fl~~a~~~gL~vilr~G 118 (711)
...++|++|++.|-+ +|.|.+. .|. ....+.+=++.|.++||.+|++.|
T Consensus 80 S~~mL~d~G~~~vii----GHSERR~---~~~E~d~~i~~K~~aa~~~Gl~pIlCvG 129 (251)
T COG0149 80 SAEMLKDLGAKYVLI----GHSERRL---YFGETDELIAKKVKAAKEAGLTPILCVG 129 (251)
T ss_pred CHHHHHHcCCCEEEE----Ccccccc---ccccchHHHHHHHHHHHHCCCeEEEEcC
Confidence 345799999999988 7776654 333 233555777899999999999986
No 171
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=33.22 E-value=81 Score=31.56 Aligned_cols=89 Identities=18% Similarity=0.281 Sum_probs=54.1
Q ss_pred EEEEeeCCCCC-----cccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeee--e-cchhHHHHHHHHHHcCCEEEeec
Q 037832 46 FSGSIHYPRST-----PEMWPDLLKKAKDGGLDIVDTYVFWNGHEPTRGKFYF--E-GRYDLVRFIKLAQQAGLYVTLRI 117 (711)
Q Consensus 46 ~sg~~hy~r~~-----~~~W~~~l~~~ka~G~N~V~~yv~Wn~hEp~~G~~df--~-g~~dl~~fl~~a~~~gL~vilr~ 117 (711)
.-|.+||++.. .++.+.-++.++..++.. ...|--.|..++.+.- + -...+.+|++..+++|..+++-.
T Consensus 54 ~~G~Yhf~~~~~~~~~~~Qa~~f~~~~~~~~~~~---~~i~lDiE~~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~~iYt 130 (196)
T cd06416 54 STDVYFFPCINCCGSAAGQVQTFLQYLKANGIKY---GTVWIDIEQNPCQWSSDVASNCQFLQELVSAAKALGLKVGIYS 130 (196)
T ss_pred ccceEEEecCCCCCCHHHHHHHHHHHHHhCCCce---eEEEEEEecCCCCCcCCHHHHHHHHHHHHHHHHHhCCeEEEEc
Confidence 33889998653 455677788888765432 1112223332333221 1 11367899999999999999988
Q ss_pred Ccccc----ccc---CCCCCCceeccc
Q 037832 118 GPYAC----AEW---NFGAFPAWLKFI 137 (711)
Q Consensus 118 GPyic----aEw---~~GG~P~WL~~~ 137 (711)
+++-. +.. +...+|.|+...
T Consensus 131 ~~~~w~~~~~~~~~~~~~~ypLWiA~Y 157 (196)
T cd06416 131 SQYDWSQIFGSSYTCNFSSLPLWYAHY 157 (196)
T ss_pred CcchhccccCCCcCCCcCCCceEecCC
Confidence 87521 111 145789999874
No 172
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=33.22 E-value=56 Score=34.22 Aligned_cols=59 Identities=15% Similarity=0.054 Sum_probs=37.8
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCCCCCCC-ceeeeecchhHHHHHHHHHHcCCEEEeec
Q 037832 58 EMWPDLLKKAKDGGLDIVDTYVFWNGHEPTR-GKFYFEGRYDLVRFIKLAQQAGLYVTLRI 117 (711)
Q Consensus 58 ~~W~~~l~~~ka~G~N~V~~yv~Wn~hEp~~-G~~df~g~~dl~~fl~~a~~~gL~vilr~ 117 (711)
+.+++.++.++++|++.|.+.-+-...++.. -.++. -...+.++.++|+++|+.+.+.+
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~-~~~~l~~l~~~a~~~gv~l~lE~ 153 (284)
T PRK13210 94 EIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQR-FIEGLAWAVEQAAAAQVMLAVEI 153 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEECCcccccccccHHHHHH-HHHHHHHHHHHHHHhCCEEEEEe
Confidence 4467889999999999998631100011111 01110 11367888899999999999987
No 173
>PF08924 DUF1906: Domain of unknown function (DUF1906); InterPro: IPR015020 This entry represents a family of uncharacterised hypothetical bacterial proteins. ; PDB: 1SFS_A.
Probab=33.19 E-value=1.1e+02 Score=29.06 Aligned_cols=91 Identities=12% Similarity=0.127 Sum_probs=46.1
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeee-cchhHHHHHHHHHHcCCEEEeecCcccccccCCCCCCcee
Q 037832 56 TPEMWPDLLKKAKDGGLDIVDTYVFWNGHEPTRGKFYFE-GRYDLVRFIKLAQQAGLYVTLRIGPYACAEWNFGAFPAWL 134 (711)
Q Consensus 56 ~~~~W~~~l~~~ka~G~N~V~~yv~Wn~hEp~~G~~df~-g~~dl~~fl~~a~~~gL~vilr~GPyicaEw~~GG~P~WL 134 (711)
.+.+.+..++.++++|+..+-+|.....+. ......++ |..|-..-+..|+++|+. . |-|-++
T Consensus 36 ~k~Lt~~e~~~i~~~Gl~i~pIyq~~~~~~-~~~~~~~~~G~~dA~~A~~~A~~lG~p----~-----------gt~IYf 99 (136)
T PF08924_consen 36 QKNLTAGEVQDIRAAGLRIFPIYQGGGRET-SDFTYGYAQGVADARDAVAAARALGFP----A-----------GTPIYF 99 (136)
T ss_dssp --B--HHHHHHHHHTT-EEEEEE---------S-B--HHHHHHHHHHHHHHHHHTT------S-----------S-EEEE
T ss_pred cCCCCHHHHHHHHHCCCEEEEEEecccccc-cccccHHHHHHHHHHHHHHHHHHcCCC----C-----------CCEEEE
Confidence 467889999999999999999988772211 11111221 567888999999999983 1 334444
Q ss_pred cccCCcccccCChhHHHHHHHHHHHHHHHHHh
Q 037832 135 KFIPGMEFRIDNQPFELEMQKWVTKIVDMLKA 166 (711)
Q Consensus 135 ~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~ 166 (711)
.-+-+ ..+..+.+.+..|++.+...|..
T Consensus 100 avD~d----~~~~~~~~~i~~Y~~g~~~~l~~ 127 (136)
T PF08924_consen 100 AVDYD----ATDAECDSAILPYFRGWNSALGA 127 (136)
T ss_dssp E--TS-----B-HH-------HHHHHHHHHGG
T ss_pred EeecC----CCchhhhhHHHHHHHHHHHHHhh
Confidence 32211 25677788888888888888884
No 174
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=33.17 E-value=1.1e+02 Score=33.01 Aligned_cols=88 Identities=25% Similarity=0.312 Sum_probs=57.0
Q ss_pred HHHHHHHCCCCEEEEcccCCCCCCCCceeeeecchhHHHHHHHHHHcCCE--EEeecCc--------ccccccCCCCCCc
Q 037832 63 LLKKAKDGGLDIVDTYVFWNGHEPTRGKFYFEGRYDLVRFIKLAQQAGLY--VTLRIGP--------YACAEWNFGAFPA 132 (711)
Q Consensus 63 ~l~~~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~--vilr~GP--------yicaEw~~GG~P~ 132 (711)
+|++-.++|.+.+-|-.| ||.+ .+.+|++.|++.|+. |+..+-| ++ ++...-++|.
T Consensus 168 ~Lk~K~~aGA~~~iTQ~~----------Fd~~---~~~~f~~~~~~~Gi~vPIi~GI~pi~s~~~~~~~-~~~~Gv~vP~ 233 (296)
T PRK09432 168 NLKRKVDAGANRAITQFF----------FDVE---SYLRFRDRCVSAGIDVEIVPGILPVSNFKQLKKF-ADMTNVRIPA 233 (296)
T ss_pred HHHHHHHcCCCeeecccc----------cchH---HHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHH-HHccCCCCCH
Confidence 566666789988888433 3444 788999999999955 5555444 23 5667778899
Q ss_pred eecccCCcccccCC-hhHHHHHHHHHHHHHHHHHh
Q 037832 133 WLKFIPGMEFRIDN-QPFELEMQKWVTKIVDMLKA 166 (711)
Q Consensus 133 WL~~~p~~~~R~~d-~~y~~~~~~~~~~l~~~l~~ 166 (711)
|+.+.=+ +. .+| ...+++--++..++++.+.+
T Consensus 234 ~l~~~l~-~~-~d~~~~~~~~Gi~~a~e~i~~L~~ 266 (296)
T PRK09432 234 WMAKMFD-GL-DDDAETRKLVGASIAMDMVKILSR 266 (296)
T ss_pred HHHHHHH-hc-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9976210 01 133 33555666777777777763
No 175
>PTZ00333 triosephosphate isomerase; Provisional
Probab=33.14 E-value=86 Score=33.22 Aligned_cols=50 Identities=28% Similarity=0.220 Sum_probs=39.0
Q ss_pred HHHHHHHCCCCEEEEcccCCCCCCCCceeeeecchhHHHHHHHHHHcCCEEEeecC
Q 037832 63 LLKKAKDGGLDIVDTYVFWNGHEPTRGKFYFEGRYDLVRFIKLAQQAGLYVTLRIG 118 (711)
Q Consensus 63 ~l~~~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~vilr~G 118 (711)
.-.++|++|++.|-+ .|-|.+. -|. +.+..+.+=++.|.++||.+|++.|
T Consensus 81 S~~mL~d~G~~~vii----GHSERR~-~f~-Etd~~I~~Kv~~al~~gl~pIlCvG 130 (255)
T PTZ00333 81 SAEMLKDLGINWTIL----GHSERRQ-YFG-ETNEIVAQKVKNALENGLKVILCIG 130 (255)
T ss_pred CHHHHHHcCCCEEEE----CcccccC-cCC-CCcHHHHHHHHHHHHCCCEEEEEcC
Confidence 346899999999988 6666654 221 2356888889999999999999987
No 176
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=32.12 E-value=59 Score=36.79 Aligned_cols=68 Identities=13% Similarity=0.304 Sum_probs=44.7
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeeecc--hhHHHHHHHHHHcCCEEEeecCcccccc
Q 037832 56 TPEMWPDLLKKAKDGGLDIVDTYVFWNGHEPTRGKFYFEGR--YDLVRFIKLAQQAGLYVTLRIGPYACAE 124 (711)
Q Consensus 56 ~~~~W~~~l~~~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~--~dl~~fl~~a~~~gL~vilr~GPyicaE 124 (711)
..+...+.++.+++.|+-.=...+-..... ..+.|.|+.. -|..++++.+++.|+++++..-|+|+-+
T Consensus 41 ~~~~v~~~i~~~~~~~iP~d~~~iD~~~~~-~~~~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~ 110 (441)
T PF01055_consen 41 NQDEVREVIDRYRSNGIPLDVIWIDDDYQD-GYGDFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSND 110 (441)
T ss_dssp SHHHHHHHHHHHHHTT--EEEEEE-GGGSB-TTBTT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETT
T ss_pred CHHHHHHHHHHHHHcCCCccceeccccccc-cccccccccccccchHHHHHhHhhCCcEEEEEeecccCCC
Confidence 456678899999999987655544322222 3445555532 2899999999999999999988887654
No 177
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=31.89 E-value=58 Score=33.92 Aligned_cols=60 Identities=7% Similarity=-0.055 Sum_probs=38.6
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeeecchhHHHHHHHHHHcCCEEEeec
Q 037832 58 EMWPDLLKKAKDGGLDIVDTYVFWNGHEPTRGKFYFEGRYDLVRFIKLAQQAGLYVTLRI 117 (711)
Q Consensus 58 ~~W~~~l~~~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~vilr~ 117 (711)
+..++.++.++++|..+|.+...+.-....+.+..-.-...|.++.++|++.|+.+.+.|
T Consensus 85 ~~~~~~i~~a~~lga~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~ 144 (258)
T PRK09997 85 DGVAAAIRYARALGNKKINCLVGKTPAGFSSEQIHATLVENLRYAANMLMKEDILLLIEP 144 (258)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 346788899999999999874333211111111100112366777888999999999997
No 178
>PRK14566 triosephosphate isomerase; Provisional
Probab=31.88 E-value=92 Score=33.17 Aligned_cols=50 Identities=26% Similarity=0.193 Sum_probs=37.7
Q ss_pred HHHHHHHCCCCEEEEcccCCCCCCCCceeeeecchhHHHHHHHHHHcCCEEEeecC
Q 037832 63 LLKKAKDGGLDIVDTYVFWNGHEPTRGKFYFEGRYDLVRFIKLAQQAGLYVTLRIG 118 (711)
Q Consensus 63 ~l~~~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~vilr~G 118 (711)
--+++|++|++.|-+ +|-|.+. .|. +.+..+.+=++.|.++||.+|++.|
T Consensus 87 S~~mL~d~G~~~vii----GHSERR~-~f~-Etd~~v~~Kv~~al~~gl~pIvCvG 136 (260)
T PRK14566 87 SGQMLKDAGCRYVII----GHSERRR-MYG-ETSNIVAEKFAAAQKHGLTPILCVG 136 (260)
T ss_pred CHHHHHHcCCCEEEE----CcccccC-CCC-cCHHHHHHHHHHHHHCCCEEEEEcC
Confidence 346799999999888 7766664 222 2334566678899999999999987
No 179
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=31.04 E-value=57 Score=36.48 Aligned_cols=87 Identities=17% Similarity=0.233 Sum_probs=65.1
Q ss_pred ceEEEEcCCcEEECCEEeEEEEEEeeCCC-CCcccHHHHHHHHHHC-CCCEEEEcccCCCCCCCCceeeeecchhHHHHH
Q 037832 26 KSTVTYDRKGLIINGQRRILFSGSIHYPR-STPEMWPDLLKKAKDG-GLDIVDTYVFWNGHEPTRGKFYFEGRYDLVRFI 103 (711)
Q Consensus 26 ~~~v~~d~~~~~i~G~p~~~~sg~~hy~r-~~~~~W~~~l~~~ka~-G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl 103 (711)
...|-.-+-+|-+.-.+-...+=++.|+- .|.+.||-+|..+.++ -=||+.+-|- |=+.|--++|.-. .|.+++
T Consensus 150 ~aNILlPrPGfp~Y~~~a~~~~lEVR~ydlLPe~~weIDL~~veal~DENT~Aivvi-NP~NPcGnVys~~---HL~kia 225 (447)
T KOG0259|consen 150 GANILLPRPGFPLYDTRAIYSGLEVRYYDLLPEKDWEIDLDGVEALADENTVAIVVI-NPNNPCGNVYSED---HLKKIA 225 (447)
T ss_pred CCceecCCCCCchHHHhhhhcCceeEeecccCcccceechHHHHHhhccCeeEEEEe-CCCCCCcccccHH---HHHHHH
Confidence 34555555556555555445555555443 5888899999999987 7788887543 7788888899877 899999
Q ss_pred HHHHHcCCEEEee
Q 037832 104 KLAQQAGLYVTLR 116 (711)
Q Consensus 104 ~~a~~~gL~vilr 116 (711)
++|+++|+.||..
T Consensus 226 e~A~klgi~vIaD 238 (447)
T KOG0259|consen 226 ETAKKLGIMVIAD 238 (447)
T ss_pred HHHHHhCCeEEeh
Confidence 9999999999854
No 180
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=30.99 E-value=1.6e+02 Score=33.48 Aligned_cols=104 Identities=19% Similarity=0.301 Sum_probs=60.8
Q ss_pred CcccHHHHHHHHHHCCCCEEEE-cccCCCCCC----CCceeeee-----c-----chhHHHHHHHHH-HcCCEEEeecCc
Q 037832 56 TPEMWPDLLKKAKDGGLDIVDT-YVFWNGHEP----TRGKFYFE-----G-----RYDLVRFIKLAQ-QAGLYVTLRIGP 119 (711)
Q Consensus 56 ~~~~W~~~l~~~ka~G~N~V~~-yv~Wn~hEp----~~G~~df~-----g-----~~dl~~fl~~a~-~~gL~vilr~GP 119 (711)
+-+.|+++|+.++++|.|+|.. ++---.... ..++..|+ . ..++.+++..++ ++||.++...=
T Consensus 20 ~~~~W~~~l~~~~~~GYNmIHftPlq~~G~S~S~YSI~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~~~~~ll~~~DvV- 98 (423)
T PF14701_consen 20 PFSDWEKHLKVISEKGYNMIHFTPLQERGESNSPYSIYDQLKFDPDFFPPGKESTFEDVKEFVKEAEKKYGLLSMTDVV- 98 (423)
T ss_pred CHhHHHHHHHHHHHcCCcEEEecccccCCCCCCCccccchhhcChhhcCCCccccHHHHHHHHHHHHHHcCceEEEEEe-
Confidence 5568999999999999999984 222111100 01122221 1 148999998875 79999875531
Q ss_pred ccccccCCCC-CCceecccCCcccccCChhHHHHH---HHHHHHHHHHHH
Q 037832 120 YACAEWNFGA-FPAWLKFIPGMEFRIDNQPFELEM---QKWVTKIVDMLK 165 (711)
Q Consensus 120 yicaEw~~GG-~P~WL~~~p~~~~R~~d~~y~~~~---~~~~~~l~~~l~ 165 (711)
|+.-. ==.||..+|+.-.-..+.++|+.+ ++.+.++...|.
T Consensus 99 -----~NHtA~nS~Wl~eHPEagYN~~nsPHL~pA~eLD~aL~~fS~~l~ 143 (423)
T PF14701_consen 99 -----LNHTANNSPWLREHPEAGYNLENSPHLRPAYELDRALLEFSKDLE 143 (423)
T ss_pred -----eccCcCCChHHHhCcccccCCCCCcchhhHHHHHHHHHHHHHHHH
Confidence 32222 257999999865444455555433 334444444444
No 181
>PRK15492 triosephosphate isomerase; Provisional
Probab=30.87 E-value=97 Score=32.96 Aligned_cols=50 Identities=20% Similarity=0.103 Sum_probs=38.1
Q ss_pred HHHHHHHCCCCEEEEcccCCCCCCCCceeeeecchhHHHHHHHHHHcCCEEEeecC
Q 037832 63 LLKKAKDGGLDIVDTYVFWNGHEPTRGKFYFEGRYDLVRFIKLAQQAGLYVTLRIG 118 (711)
Q Consensus 63 ~l~~~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~vilr~G 118 (711)
.-.++|++|++.|-+ +|-|.+. .|. +.+..+.+=++.|.++||.+|++.|
T Consensus 86 Sa~mLkd~G~~~vii----GHSERR~-~f~-Etd~~v~~Kv~~a~~~gl~pIvCiG 135 (260)
T PRK15492 86 SPLMLKEIGTQLVMI----GHSERRH-KFG-ETDQEENAKVLAALKHDFTTLLCVG 135 (260)
T ss_pred CHHHHHHcCCCEEEE----Ccccccc-ccC-cchHHHHHHHHHHHHCCCEEEEEcC
Confidence 456799999999998 7766665 332 2344566678889999999999987
No 182
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=30.60 E-value=3.2e+02 Score=26.85 Aligned_cols=49 Identities=14% Similarity=0.192 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHhcccccccCCceEeecccccccchhcccCcchHHHHHHHHHHHH
Q 037832 153 MQKWVTKIVDMLKAEKLFETQGGPIILSQIENEFELVEWNLGDRARVYGQWAAHMAI 209 (711)
Q Consensus 153 ~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~ 209 (711)
+.+-+.+++..++ ..+.++|.+ .||.|+-.-++.+..+.|++.|-.+-+
T Consensus 101 ~~~~i~~l~~~l~------~~~~~~viV--snEvG~g~vp~~~~~r~f~d~lG~lnq 149 (169)
T cd00544 101 IADEIDALLAAVR------NKPGTLILV--SNEVGLGVVPENALGRRFRDELGRLNQ 149 (169)
T ss_pred HHHHHHHHHHHHH------cCCCcEEEE--ECCcCCCCCCCCHHHHHHHHHHHHHHH
Confidence 3444555666666 245688887 599986432344567888876665543
No 183
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=30.17 E-value=99 Score=34.04 Aligned_cols=73 Identities=14% Similarity=0.141 Sum_probs=49.1
Q ss_pred eeCCCC---CcccHHHHHHHHHHCCCCEEEEcc----------cCCCCCC---------CCceeeeec---chhHHHHHH
Q 037832 50 IHYPRS---TPEMWPDLLKKAKDGGLDIVDTYV----------FWNGHEP---------TRGKFYFEG---RYDLVRFIK 104 (711)
Q Consensus 50 ~hy~r~---~~~~W~~~l~~~ka~G~N~V~~yv----------~Wn~hEp---------~~G~~df~g---~~dl~~fl~ 104 (711)
+|..|. ..+.-++.++++++.||..=-+++ .|+...- .-+.++|.. --|..++++
T Consensus 13 ~~~sr~~Y~~~~ev~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FPdp~~mi~ 92 (340)
T cd06597 13 LWMSANEWDTQAEVMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWPNPKGMID 92 (340)
T ss_pred hhhhccCCCCHHHHHHHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceecccccCccccCCCHHHHHH
Confidence 455554 455667899999999997555443 2442211 113344431 127999999
Q ss_pred HHHHcCCEEEeecCcccc
Q 037832 105 LAQQAGLYVTLRIGPYAC 122 (711)
Q Consensus 105 ~a~~~gL~vilr~GPyic 122 (711)
..++.|++|+|..=|+|.
T Consensus 93 ~Lh~~G~kv~l~v~P~i~ 110 (340)
T cd06597 93 ELHEQGVKVLLWQIPIIK 110 (340)
T ss_pred HHHHCCCEEEEEecCccc
Confidence 999999999999888875
No 184
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=30.01 E-value=3.5e+02 Score=29.61 Aligned_cols=138 Identities=14% Similarity=0.133 Sum_probs=67.1
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeeecchhHHHHHHHHHHcCCEEEeecCcccccccCCCCCCcee
Q 037832 55 STPEMWPDLLKKAKDGGLDIVDTYVFWNGHEPTRGKFYFEGRYDLVRFIKLAQQAGLYVTLRIGPYACAEWNFGAFPAWL 134 (711)
Q Consensus 55 ~~~~~W~~~l~~~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~vilr~GPyicaEw~~GG~P~WL 134 (711)
...+...+--+.+...|+|.|.+ |-.--.+-.-.=+....+.++-++.+.+|++|-|-.- ..+--+-||+
T Consensus 54 ~~~~R~~~YARllASiGINgvvl----NNVNa~~~~Lt~~~l~~v~~lAdvfRpYGIkv~LSvn--FasP~~lggL---- 123 (328)
T PF07488_consen 54 RDLTRYRDYARLLASIGINGVVL----NNVNANPKLLTPEYLDKVARLADVFRPYGIKVYLSVN--FASPIELGGL---- 123 (328)
T ss_dssp S--HHHHHHHHHHHHTT--EEE-----S-SS--CGGGSTTTHHHHHHHHHHHHHTT-EEEEEE---TTHHHHTTS-----
T ss_pred cchhHHHHHHHHHhhcCCceEEe----cccccChhhcCHHHHHHHHHHHHHHhhcCCEEEEEee--ccCCcccCCc----
Confidence 34556778888899999999987 3322222111112234677888888999999976631 1122223442
Q ss_pred cccCCcccccCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeecccccccchhcccCcchHHHHHHHHHHHHhcCCc
Q 037832 135 KFIPGMEFRIDNQPFELEMQKWVTKIVDMLKAEKLFETQGGPIILSQIENEFELVEWNLGDRARVYGQWAAHMAIGLNIT 214 (711)
Q Consensus 135 ~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~ 214 (711)
-|.|| .-++|++|+++.++.|-++ .-.=||=++=.-=|.+.|-. .||.+..+=..-|++.++-+|=.
T Consensus 124 --------~TaDP-ld~~V~~WW~~k~~eIY~~--IPDfgGflVKAdSEGqPGP~--~YgRthAdGANmlA~Al~P~GG~ 190 (328)
T PF07488_consen 124 --------PTADP-LDPEVRQWWKDKADEIYSA--IPDFGGFLVKADSEGQPGPF--TYGRTHADGANMLARALKPHGGI 190 (328)
T ss_dssp --------S---T-TSHHHHHHHHHHHHHHHHH---TT--EEEE--SBTTB--GG--GGT--HHHHHHHHHHHHGGGT-E
T ss_pred --------CcCCC-CCHHHHHHHHHHHHHHHHh--CCCccceEEEecCCCCCCCc--ccCCCchhhHHHHHHHhhccCCE
Confidence 33333 3466777877766655421 11235544444445555543 46654445566777777766633
Q ss_pred c
Q 037832 215 V 215 (711)
Q Consensus 215 v 215 (711)
|
T Consensus 191 V 191 (328)
T PF07488_consen 191 V 191 (328)
T ss_dssp E
T ss_pred E
Confidence 3
No 185
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=29.98 E-value=62 Score=33.47 Aligned_cols=59 Identities=12% Similarity=-0.098 Sum_probs=38.4
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCCC-CCCCceeeeecchhHHHHHHHHHHcCCEEEeec
Q 037832 58 EMWPDLLKKAKDGGLDIVDTYVFWNGH-EPTRGKFYFEGRYDLVRFIKLAQQAGLYVTLRI 117 (711)
Q Consensus 58 ~~W~~~l~~~ka~G~N~V~~yv~Wn~h-Ep~~G~~df~g~~dl~~fl~~a~~~gL~vilr~ 117 (711)
+.+++.++.++++|..+|.+...+..- .+.+-.++ .-...+.++.+.|++.|+.+.+.+
T Consensus 84 ~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~-~~~~~l~~l~~~A~~~gi~l~lE~ 143 (254)
T TIGR03234 84 EGVALAIAYARALGCPQVNCLAGKRPAGVSPEEARA-TLVENLRYAADALDRIGLTLLIEP 143 (254)
T ss_pred HHHHHHHHHHHHhCCCEEEECcCCCCCCCCHHHHHH-HHHHHHHHHHHHHHhcCCEEEEEE
Confidence 567788899999999999864322110 01110010 112357788899999999999987
No 186
>KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms]
Probab=29.93 E-value=90 Score=31.55 Aligned_cols=68 Identities=13% Similarity=0.051 Sum_probs=38.7
Q ss_pred CCCCCcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeeecchhHHHHHHHHHHc--CCEEEeecCccccc
Q 037832 52 YPRSTPEMWPDLLKKAKDGGLDIVDTYVFWNGHEPTRGKFYFEGRYDLVRFIKLAQQA--GLYVTLRIGPYACA 123 (711)
Q Consensus 52 y~r~~~~~W~~~l~~~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~--gL~vilr~GPyica 123 (711)
..++..+|--..-+.+|+.||.++-.--.=..|...+=-|-=. =-+.=+-..+. .-++|+||||..|-
T Consensus 103 fykvDhDyvl~~A~~AKe~Gck~fvLvSS~GAd~sSrFlY~k~----KGEvE~~v~eL~F~~~~i~RPG~ll~~ 172 (238)
T KOG4039|consen 103 FYKVDHDYVLQLAQAAKEKGCKTFVLVSSAGADPSSRFLYMKM----KGEVERDVIELDFKHIIILRPGPLLGE 172 (238)
T ss_pred eEeechHHHHHHHHHHHhCCCeEEEEEeccCCCcccceeeeec----cchhhhhhhhccccEEEEecCcceecc
Confidence 4577888888888999999998765432223333332111111 00111222233 34589999998775
No 187
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=29.88 E-value=73 Score=38.59 Aligned_cols=55 Identities=25% Similarity=0.344 Sum_probs=40.1
Q ss_pred HHHHHHHCCCCEEEE-cccCCCCCCCC--------------------ceeeeec-----chhHHHHHHHHHHcCCEEEee
Q 037832 63 LLKKAKDGGLDIVDT-YVFWNGHEPTR--------------------GKFYFEG-----RYDLVRFIKLAQQAGLYVTLR 116 (711)
Q Consensus 63 ~l~~~ka~G~N~V~~-yv~Wn~hEp~~--------------------G~~df~g-----~~dl~~fl~~a~~~gL~vilr 116 (711)
.|.-+|++|+++|+. +|+.-..|+.. |.|--+. .+.+..+++.++++||-|||.
T Consensus 205 ~i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILD 284 (697)
T COG1523 205 IIDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILD 284 (697)
T ss_pred HHHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEE
Confidence 389999999999996 67755555432 2222222 247788899999999999998
Q ss_pred c
Q 037832 117 I 117 (711)
Q Consensus 117 ~ 117 (711)
.
T Consensus 285 V 285 (697)
T COG1523 285 V 285 (697)
T ss_pred E
Confidence 4
No 188
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=29.85 E-value=1.6e+02 Score=31.29 Aligned_cols=106 Identities=24% Similarity=0.260 Sum_probs=66.6
Q ss_pred eEEEEEEeeCCCCCcc----cHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeeecchhHHHHHHHHHHcCCEEEeecC
Q 037832 43 RILFSGSIHYPRSTPE----MWPDLLKKAKDGGLDIVDTYVFWNGHEPTRGKFYFEGRYDLVRFIKLAQQAGLYVTLRIG 118 (711)
Q Consensus 43 ~~~~sg~~hy~r~~~~----~W~~~l~~~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~vilr~G 118 (711)
.+-+++..|+.+.+.. .=.++|++-.++|.+.+-|-.+ ||.+ .+.+|++.|++.|+.+=+.+|
T Consensus 125 ~f~ig~a~~Peghp~~~~~~~~~~~L~~K~~aGA~f~iTQ~~----------fd~~---~~~~~~~~~~~~gi~~PIi~G 191 (272)
T TIGR00676 125 DFDIGVAAYPEKHPEAPNLEEDIENLKRKVDAGADYAITQLF----------FDND---DYYRFVDRCRAAGIDVPIIPG 191 (272)
T ss_pred CeeEEEEeCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeeccc----------cCHH---HHHHHHHHHHHcCCCCCEecc
Confidence 4678888877654332 2235566777899999988433 3434 788999999999766544444
Q ss_pred --ccc-------ccccCCCCCCceecccCCcccc--cCC-hhHHHHHHHHHHHHHHHHH
Q 037832 119 --PYA-------CAEWNFGAFPAWLKFIPGMEFR--IDN-QPFELEMQKWVTKIVDMLK 165 (711)
Q Consensus 119 --Pyi-------caEw~~GG~P~WL~~~p~~~~R--~~d-~~y~~~~~~~~~~l~~~l~ 165 (711)
|-. ..+|..-.+|.|+.+. +. .++ ...+++--++..+++..+.
T Consensus 192 i~p~~s~k~~~~~~~~~Gv~vP~~~~~~----l~~~~~~~~~~~~~gi~~~~~~~~~l~ 246 (272)
T TIGR00676 192 IMPITNFKQLLRFAERCGAEIPAWLVKR----LEKYDDDPEEVRAVGIEYATDQCEDLI 246 (272)
T ss_pred cCCcCCHHHHHHHHhccCCCCCHHHHHH----HHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 321 2346666788888752 21 123 3455566667777777666
No 189
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=29.81 E-value=8.4e+02 Score=27.40 Aligned_cols=86 Identities=15% Similarity=0.209 Sum_probs=50.8
Q ss_pred HHHcCCEEEeecCcccccccCCCCCCceecccCCc------ccc-cCChhHHHHHHHHHHHHHHHHHhcccccccCCceE
Q 037832 106 AQQAGLYVTLRIGPYACAEWNFGAFPAWLKFIPGM------EFR-IDNQPFELEMQKWVTKIVDMLKAEKLFETQGGPII 178 (711)
Q Consensus 106 a~~~gL~vilr~GPyicaEw~~GG~P~WL~~~p~~------~~R-~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII 178 (711)
+-..|+.|+.-| |. .|+|+.+.-.+ ++| ...++|-++..+|+.+ ++ .+|=|+-
T Consensus 111 ~in~g~ivfASP-------Ws---pPa~Mktt~~~ngg~~g~Lk~e~Ya~yA~~l~~fv~~----m~------~nGvnly 170 (433)
T COG5520 111 AINPGMIVFASP-------WS---PPASMKTTNNRNGGNAGRLKYEKYADYADYLNDFVLE----MK------NNGVNLY 170 (433)
T ss_pred hcCCCcEEEecC-------CC---CchhhhhccCcCCccccccchhHhHHHHHHHHHHHHH----HH------hCCCcee
Confidence 556789998887 63 89999863221 333 2345554444444433 34 4566888
Q ss_pred eecccccccchhcccCc---chHHHHHHHHHHHHhcC
Q 037832 179 LSQIENEFELVEWNLGD---RARVYGQWAAHMAIGLN 212 (711)
Q Consensus 179 ~~QiENEyg~~~~~~~~---~~~~y~~~l~~~~~~~g 212 (711)
+..|.||...-. .|.. ...+.++.++|-++...
T Consensus 171 alSVQNEPd~~p-~~d~~~wtpQe~~rF~~qyl~si~ 206 (433)
T COG5520 171 ALSVQNEPDYAP-TYDWCWWTPQEELRFMRQYLASIN 206 (433)
T ss_pred EEeeccCCcccC-CCCcccccHHHHHHHHHHhhhhhc
Confidence 888999987532 1211 24455666666665544
No 190
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=29.64 E-value=2.2e+02 Score=29.85 Aligned_cols=54 Identities=22% Similarity=0.207 Sum_probs=35.8
Q ss_pred HHHHHHHHHCCCCEEEEcccCCCCCCCCceeeeecchhHHHHH----HHHHHcCCEEEeecC
Q 037832 61 PDLLKKAKDGGLDIVDTYVFWNGHEPTRGKFYFEGRYDLVRFI----KLAQQAGLYVTLRIG 118 (711)
Q Consensus 61 ~~~l~~~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl----~~a~~~gL~vilr~G 118 (711)
.++|+||+..|+.+|-+--+|.+---.+++|- .-+.+++ .-|.+.||.+-+..|
T Consensus 14 ~eDlekMa~sGI~~Vit~AhdP~~~~~~~v~~----~h~~rl~~~E~~Ra~~~Gl~~~vavG 71 (254)
T COG1099 14 FEDLEKMALSGIREVITLAHDPYPMKTAEVYL----DHFRRLLGVEPERAEKAGLKLKVAVG 71 (254)
T ss_pred HHHHHHHHHhChhhhhhcccCCCCcccHHHHH----HHHHHHHccchhhHHhhCceeeEEec
Confidence 37899999999999999666653333343331 1222332 348899999887765
No 191
>KOG3833 consensus Uncharacterized conserved protein, contains RtcB domain [Function unknown]
Probab=29.55 E-value=58 Score=35.40 Aligned_cols=53 Identities=17% Similarity=0.208 Sum_probs=46.3
Q ss_pred cHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeeecchhHHHHHHHHHHcCCE--EE-eec
Q 037832 59 MWPDLLKKAKDGGLDIVDTYVFWNGHEPTRGKFYFEGRYDLVRFIKLAQQAGLY--VT-LRI 117 (711)
Q Consensus 59 ~W~~~l~~~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~--vi-lr~ 117 (711)
.|++.+.+++..|+ +|+..-+--..|..|+.|. |+.+.+++|+..||- +| |||
T Consensus 444 ~~~sV~D~L~~~~I-~iR~aSpklvmEEAPesYK-----dVtdVVdtc~~aGiskK~~klrP 499 (505)
T KOG3833|consen 444 THESVLDKLRSRGI-AIRVASPKLVMEEAPESYK-----DVTDVVDTCDAAGISKKAIKLRP 499 (505)
T ss_pred cHHHHHHHHHhCCe-EEEeCCccchhhhCchhhh-----hHHHHhhhhhhcccchhhhcccc
Confidence 48999999999999 6788788888999999986 999999999999996 33 666
No 192
>KOG0683 consensus Glutamine synthetase [Amino acid transport and metabolism]
Probab=29.33 E-value=67 Score=35.57 Aligned_cols=45 Identities=24% Similarity=0.541 Sum_probs=36.9
Q ss_pred CCCCCceeeee-c---------chhHHHHH--HHHHHcCCEEEeecCcccccccCCCC
Q 037832 84 HEPTRGKFYFE-G---------RYDLVRFI--KLAQQAGLYVTLRIGPYACAEWNFGA 129 (711)
Q Consensus 84 hEp~~G~~df~-g---------~~dl~~fl--~~a~~~gL~vilr~GPyicaEw~~GG 129 (711)
.|..||+|.|+ | +.+..+++ +.|++.|+.+-+-|=| +-+.|+..|
T Consensus 202 ~EvmPgQwEfqvGp~~GI~~gD~lw~aR~il~rVae~~Gviasf~pKp-~~g~WngaG 258 (380)
T KOG0683|consen 202 VEVMPGQWEFQVGPCEGISMGDQLWMARYILHRVAEKFGVIASFDPKP-ILGDWNGAG 258 (380)
T ss_pred ccccCceeEEeecchhcccchhhHHHHHHHHHHHHHHhCeeEEecCCC-CCCcccCcc
Confidence 36889999995 2 35677776 8899999999999977 899999876
No 193
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=29.33 E-value=1.8e+02 Score=35.32 Aligned_cols=62 Identities=11% Similarity=0.090 Sum_probs=43.8
Q ss_pred CCCcccHHHHHHHHHHCCCCEEEEcccCC---CCCCCCc---eeeee--cchhHHHHHHHHHHcCCEEEe
Q 037832 54 RSTPEMWPDLLKKAKDGGLDIVDTYVFWN---GHEPTRG---KFYFE--GRYDLVRFIKLAQQAGLYVTL 115 (711)
Q Consensus 54 r~~~~~W~~~l~~~ka~G~N~V~~yv~Wn---~hEp~~G---~~df~--g~~dl~~fl~~a~~~gL~vil 115 (711)
.+.++..++.|+-+|+.|+++|+.--.-. ...+.|+ ...|+ ...+....+.+.+++|+...+
T Consensus 68 ~Vspe~Fe~qL~~Lk~nGY~~ISl~el~~~~~g~~~LP~K~VaLTFDDGy~s~yt~A~PILkkygvpATf 137 (671)
T PRK14582 68 SVRTSALREQFAWLRENGYQPVSVAQILEAHRGGKPLPEKAVLLTFDDGYSSFYTRVFPILQAFQWPAVW 137 (671)
T ss_pred ccCHHHHHHHHHHHHHCcCEEccHHHHHHHHhcCCCCCCCeEEEEEEcCCCchHHHHHHHHHHcCCCEEE
Confidence 34677899999999999999999864422 2233344 23454 245667888999999998654
No 194
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=28.95 E-value=98 Score=33.63 Aligned_cols=61 Identities=11% Similarity=0.231 Sum_probs=41.4
Q ss_pred CcccHHHHHHHHHHCCCCEEEEccc----CCCCCC------CCceee------eecchhHHHHHHHHHHcCCEEEee
Q 037832 56 TPEMWPDLLKKAKDGGLDIVDTYVF----WNGHEP------TRGKFY------FEGRYDLVRFIKLAQQAGLYVTLR 116 (711)
Q Consensus 56 ~~~~W~~~l~~~ka~G~N~V~~yv~----Wn~hEp------~~G~~d------f~g~~dl~~fl~~a~~~gL~vilr 116 (711)
+.+.-++.|+.|...++|++..++- |.+.-+ +.|.+. +=...++.++++.|++.|+.||..
T Consensus 16 ~~~~ik~~id~ma~~k~N~lhlhl~D~~~~~~~~~~~p~l~~~ga~~~~~~~~~yT~~di~~lv~yA~~~gI~VIPe 92 (351)
T PF00728_consen 16 SVDTIKRLIDQMAYYKLNVLHLHLSDDQGFRLESKSYPELTEKGAYRPSDAGGYYTKEDIRELVAYAKERGIEVIPE 92 (351)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEEEEESSTCB-BEBSTSTHHHHTTTESTTCTESEBEHHHHHHHHHHHHHTT-EEEEE
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEEecCCCCccccCCCccccccCccccccccccCCHHHHHHHHHHHHHcCCceeee
Confidence 6777889999999999999998874 433211 122111 112349999999999999999966
No 195
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=28.61 E-value=75 Score=33.74 Aligned_cols=52 Identities=27% Similarity=0.296 Sum_probs=34.1
Q ss_pred HHHHHHHHHCCCCEEEEcccCC--CCCCCCceeeeecchhHHHHHHHHHHcCCEEEe
Q 037832 61 PDLLKKAKDGGLDIVDTYVFWN--GHEPTRGKFYFEGRYDLVRFIKLAQQAGLYVTL 115 (711)
Q Consensus 61 ~~~l~~~ka~G~N~V~~yv~Wn--~hEp~~G~~df~g~~dl~~fl~~a~~~gL~vil 115 (711)
++.+++||++|++.|...+--+ .++...+..+|+ +..+.++.++++|+.|..
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~~~~s~~---~~~~ai~~l~~~Gi~v~~ 176 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLDTSQEFYSNIISTHTYD---DRVDTLENAKKAGLKVCS 176 (296)
T ss_pred HHHHHHHHHcCCCEEEEcccCCHHHHhhccCCCCHH---HHHHHHHHHHHcCCEEEE
Confidence 6789999999999988864410 111111223333 556778899999998643
No 196
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=28.32 E-value=8.3e+02 Score=27.85 Aligned_cols=78 Identities=9% Similarity=0.056 Sum_probs=51.5
Q ss_pred HHHHHHHHCCCCEEEEccc----CCCCCCCCceeeeecchhHHHHHHHHHHcCCEE--EeecCcccccccCCCCCCceec
Q 037832 62 DLLKKAKDGGLDIVDTYVF----WNGHEPTRGKFYFEGRYDLVRFIKLAQQAGLYV--TLRIGPYACAEWNFGAFPAWLK 135 (711)
Q Consensus 62 ~~l~~~ka~G~N~V~~yv~----Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~v--ilr~GPyicaEw~~GG~P~WL~ 135 (711)
..++.+.+.|+|+++++.- |..-+..+ .++.+|.+.|+++||.+ ++-=+||.
T Consensus 145 ~a~~~a~~~g~~afqiF~~npr~w~~~~~~~--------~~~~~f~~~~~~~gi~~~~i~~HapYl-------------- 202 (413)
T PTZ00372 145 NSPINAYNIAGQAFALFLKNQRTWNSPPLSD--------ETIDKFKENCKKYNYDPKFILPHGSYL-------------- 202 (413)
T ss_pred HHHHHHHHcCCCEEEEEcCCCccCCCCCCCH--------HHHHHHHHHHHHcCCCcceEEeecCce--------------
Confidence 4788999999999999873 66544444 37899999999998852 33345663
Q ss_pred ccCCcccccCChhHHHHHHHHHHHHHHHHH
Q 037832 136 FIPGMEFRIDNQPFELEMQKWVTKIVDMLK 165 (711)
Q Consensus 136 ~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~ 165 (711)
+.+=+.|+.-++...+.+.+-+.+-.
T Consensus 203 ----INLASpd~e~rekSv~~~~~eL~rA~ 228 (413)
T PTZ00372 203 ----INLANPDKEKREKSYDAFLDDLQRCE 228 (413)
T ss_pred ----ecCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 12333466665655555555444444
No 197
>TIGR01698 PUNP purine nucleotide phosphorylase. methylthioadenosine.
Probab=28.22 E-value=81 Score=33.09 Aligned_cols=40 Identities=13% Similarity=0.160 Sum_probs=31.8
Q ss_pred EECCEEeEEEEEEeeCCCCC-cccHHHHHHHHHHCCCCEEE
Q 037832 37 IINGQRRILFSGSIHYPRST-PEMWPDLLKKAKDGGLDIVD 76 (711)
Q Consensus 37 ~i~G~p~~~~sg~~hy~r~~-~~~W~~~l~~~ka~G~N~V~ 76 (711)
.+.|+++..+.|..|+.... ..+-+--++.||++|+..|=
T Consensus 47 ~l~g~~V~~l~Gr~H~yeg~~~~~v~~~i~al~~lGv~~ii 87 (237)
T TIGR01698 47 RIGDGPVLVLGGRTHAYEGGDARAVVHPVRTARATGAETLI 87 (237)
T ss_pred EECCEEEEEEcCCCcccCCCcHHHhHHHHHHHHHcCCCEEE
Confidence 46899999999999976653 33347889999999998654
No 198
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=27.91 E-value=1.8e+02 Score=31.17 Aligned_cols=73 Identities=15% Similarity=0.200 Sum_probs=55.5
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeeecc--hhHHHHHHHHHHcCCEEEeecCcccccccCCCCCCce
Q 037832 56 TPEMWPDLLKKAKDGGLDIVDTYVFWNGHEPTRGKFYFEGR--YDLVRFIKLAQQAGLYVTLRIGPYACAEWNFGAFPAW 133 (711)
Q Consensus 56 ~~~~W~~~l~~~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~--~dl~~fl~~a~~~gL~vilr~GPyicaEw~~GG~P~W 133 (711)
..|+-...-+..|++|.+.++- ...-|+---|+|.|. .-|...-+.++++||.|+-+.
T Consensus 57 s~E~i~~~A~~vk~~Ga~~lRG----gafKPRTSPYsFQGlge~gL~~l~~a~~~~Gl~vvtEv---------------- 116 (286)
T COG2876 57 SEEQVRETAESVKAAGAKALRG----GAFKPRTSPYSFQGLGEEGLKLLKRAADETGLPVVTEV---------------- 116 (286)
T ss_pred CHHHHHHHHHHHHHcchhhccC----CcCCCCCCcccccccCHHHHHHHHHHHHHcCCeeEEEe----------------
Confidence 4566677788999999999998 555677777999863 566666677889999998774
Q ss_pred ecccCCcccccCChhHHHHHHHHHHH
Q 037832 134 LKFIPGMEFRIDNQPFELEMQKWVTK 159 (711)
Q Consensus 134 L~~~p~~~~R~~d~~y~~~~~~~~~~ 159 (711)
.|+..++.+.+|.+.
T Consensus 117 -----------m~~~~~e~~~~y~Di 131 (286)
T COG2876 117 -----------MDVRDVEAAAEYADI 131 (286)
T ss_pred -----------cCHHHHHHHHhhhhH
Confidence 467777777777544
No 199
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=27.46 E-value=70 Score=34.87 Aligned_cols=115 Identities=20% Similarity=0.324 Sum_probs=60.8
Q ss_pred CEEEEcccCCCCCCC-CceeeeecchhHHHHHHHHHHcCCEEEeecCcccccccCCCCCCceecccCCcccccCChhHHH
Q 037832 73 DIVDTYVFWNGHEPT-RGKFYFEGRYDLVRFIKLAQQAGLYVTLRIGPYACAEWNFGAFPAWLKFIPGMEFRIDNQPFEL 151 (711)
Q Consensus 73 N~V~~yv~Wn~hEp~-~G~~df~g~~dl~~fl~~a~~~gL~vilr~GPyicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~ 151 (711)
+.|.++|.|++|=-. | =...++.|+++|..|+ |-.|. ||+.| ..|+.. +.-+..+..
T Consensus 27 ~yiD~fvywsh~~i~iP----------~~~widaAHrnGV~vL---GTiif-e~~~~--~~~~~~---ll~~~~~g~--- 84 (311)
T PF03644_consen 27 QYIDIFVYWSHGLITIP----------PAGWIDAAHRNGVKVL---GTIIF-EWGGG--AEWCEE---LLEKDEDGS--- 84 (311)
T ss_dssp GG-SEEEET-TBSSE-------------HHHHHHHHHTT--EE---EEEEE-EEE----HHHHHH---HT---TTS----
T ss_pred cceeeEeecccccccCC----------CchhHHHHHhcCceEE---EEEEe-cCCch--HHHHHH---HHcCCcccc---
Confidence 356788889964432 2 1258999999999996 22333 77643 345432 111122222
Q ss_pred HHHHHHHHHHHHHHhcccccccCCceEeecccccccchhcccCcchHHHHHHHHHHHHh-cCCccceEe
Q 037832 152 EMQKWVTKIVDMLKAEKLFETQGGPIILSQIENEFELVEWNLGDRARVYGQWAAHMAIG-LNITVPWIM 219 (711)
Q Consensus 152 ~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~-~g~~vp~~~ 219 (711)
.++.++|+++.+.+.+ .| +++-+|+..+... ..+.-+.+++.|++.+++ -+..|-|+.
T Consensus 85 --~~~A~kLi~ia~~yGF----DG--w~iN~E~~~~~~~--~~~~l~~F~~~l~~~~~~~~~~~v~WYD 143 (311)
T PF03644_consen 85 --FPYADKLIEIAKYYGF----DG--WLINIETPLSGPE--DAENLIDFLKYLRKEAHENPGSEVIWYD 143 (311)
T ss_dssp ---HHHHHHHHHHHHHT------E--EEEEEEESSTTGG--GHHHHHHHHHHHHHHHHHT-T-EEEEES
T ss_pred --cHHHHHHHHHHHHcCC----Cc--eEEEecccCCchh--HHHHHHHHHHHHHHHhhcCCCcEEEEee
Confidence 2456778887775443 23 7888999886410 012456788888888877 233455663
No 200
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=27.38 E-value=8.6e+02 Score=26.72 Aligned_cols=233 Identities=16% Similarity=0.114 Sum_probs=102.4
Q ss_pred HHHHHHHHCCCCEEEE-------cccCCCCCCCCceeeee-cchhHHHHHHHHHHcCCEEEeecCcccccccCCCCCCce
Q 037832 62 DLLKKAKDGGLDIVDT-------YVFWNGHEPTRGKFYFE-GRYDLVRFIKLAQQAGLYVTLRIGPYACAEWNFGAFPAW 133 (711)
Q Consensus 62 ~~l~~~ka~G~N~V~~-------yv~Wn~hEp~~G~~df~-g~~dl~~fl~~a~~~gL~vilr~GPyicaEw~~GG~P~W 133 (711)
+-.+.+|++|+..|-. +-.|.-.-..-..-+-. ++.-+.+|.+.|+++||++-+=..| ++|.....+.-
T Consensus 95 qW~~~ak~aGakY~VlTakHHDGF~LW~S~~t~~~v~~~~~krDiv~El~~A~rk~Glk~G~Y~S~---~dw~~~~~~~~ 171 (346)
T PF01120_consen 95 QWAKLAKDAGAKYVVLTAKHHDGFCLWPSKYTDYNVVNSGPKRDIVGELADACRKYGLKFGLYYSP---WDWHHPDYPPD 171 (346)
T ss_dssp HHHHHHHHTT-SEEEEEEE-TT--BSS--TT-SSBGGGGGGTS-HHHHHHHHHHHTT-EEEEEEES---SSCCCTTTTSS
T ss_pred HHHHHHHHcCCCEEEeehhhcCccccCCCCCCcccccCCCCCCCHHHHHHHHHHHcCCeEEEEecc---hHhcCcccCCC
Confidence 3478899999986542 12254432221111111 2335678999999999988764332 25654333322
Q ss_pred ecccCCcccccCChhHHHHHH-HHHHHHHHHHHhcccccccCCceEeecccccccchhcccCcchHHHHHHHHHHHHhcC
Q 037832 134 LKFIPGMEFRIDNQPFELEMQ-KWVTKIVDMLKAEKLFETQGGPIILSQIENEFELVEWNLGDRARVYGQWAAHMAIGLN 212 (711)
Q Consensus 134 L~~~p~~~~R~~d~~y~~~~~-~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g 212 (711)
....... .......+.+.++ .++.+|.+.+.+++. -+|=+-..... ....--...+.+++++..
T Consensus 172 ~~~~~~~-~~~~~~~~~~~~~~~~~~ql~EL~~~Y~~------d~lWfDg~~~~--------~~~~~~~~~~~~~i~~~q 236 (346)
T PF01120_consen 172 EEGDENG-PADGPGNWQRYYNEYWLAQLRELLTRYKP------DILWFDGGWPD--------PDEDWDSAELYNWIRKLQ 236 (346)
T ss_dssp CHCHHCC---HCCHHHHHHHHHHHHHHHHHHHHCSTE------SEEEEESTTSC--------CCTHHHHHHHHHHHHHHS
T ss_pred ccCCccc-ccccchhhHhHhhhhhHHHHHHHHhCCCc------ceEEecCCCCc--------cccccCHHHHHHHHHHhC
Confidence 2211000 0112334455555 555566666664422 12211111110 011222366677777776
Q ss_pred CccceEecCCCCCCcccccCCCCCcc-CCCCC-CCCCCCccccccccccccccCC---CCCcCCHHHHHHHHHHHHHhCC
Q 037832 213 ITVPWIMCKQANAPDPIIDTCNDFYC-DWFSP-NKDYKPKMWTENWTAWVQQFGT---PPLYRPHEDLAYSVLKFIQTGG 287 (711)
Q Consensus 213 ~~vp~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~p~~P~~~~E~~~Gwf~~wG~---~~~~~~~~~~~~~~~~~l~~g~ 287 (711)
.++.+....+....... ...+ +...+ .....|. |.=...-..||- ....++++++...+.+...+|+
T Consensus 237 p~~ii~~r~~~~~~~~~-----d~~~~E~~~~~~~~~~pw---E~~~ti~~~W~y~~~~~~~ks~~~li~~l~~~vs~ng 308 (346)
T PF01120_consen 237 PDVIINNRWGGNEQGDG-----DYNTPERGIPGEIQGRPW---ETCTTIGPSWGYNTPDEKYKSADELIDILVDSVSRNG 308 (346)
T ss_dssp TTSEEECCCSSCSSCCB-----SCCEECTTBTTTEEESEE---EEEEESSSSSS-CGGGCGS--HHHHHHHHHHHHTBTE
T ss_pred CeEEEecccCCCCCccc-----cccchhccCCCCCCCCCc---cccCcCCCCCcccCCCCCcCCHHHHHHHHHHHhccCc
Confidence 65533211111000000 0000 11100 0111121 111111233443 2344688888888888888887
Q ss_pred cc-eeeeEeeccCCCCCCCCCCccccccCCCCCCCCCCCCCchHHHHHHHHHHHhhhCC
Q 037832 288 SM-NNYYMYHGGTNFDRTNGAFVATSYDYDGVIDEYGLPSEPKWGHLSELHKVIKTCEP 345 (711)
Q Consensus 288 s~-~n~YM~hGGTNfG~~~g~~~~TSYDYdApL~E~G~~~tpKy~~lr~l~~~i~~~~~ 345 (711)
++ +|. +.+.+|.+-.+.-..||++..-++...+
T Consensus 309 nlLLNi-------------------------gP~~dG~ip~~~~~~L~e~G~Wl~~nge 342 (346)
T PF01120_consen 309 NLLLNI-------------------------GPDPDGTIPEEQVERLREIGDWLKVNGE 342 (346)
T ss_dssp EEEEEE----------------------------TTSS--HHHHHHHHHHHHHHHHHGG
T ss_pred eEEEec-------------------------CCCCCCCcCHHHHHHHHHHHHHHHhccc
Confidence 74 333 3346777756677788888877765443
No 201
>PRK14567 triosephosphate isomerase; Provisional
Probab=27.30 E-value=1.2e+02 Score=32.09 Aligned_cols=50 Identities=18% Similarity=0.161 Sum_probs=37.7
Q ss_pred HHHHHHHCCCCEEEEcccCCCCCCCCceeeeecchhHHHHHHHHHHcCCEEEeecC
Q 037832 63 LLKKAKDGGLDIVDTYVFWNGHEPTRGKFYFEGRYDLVRFIKLAQQAGLYVTLRIG 118 (711)
Q Consensus 63 ~l~~~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~vilr~G 118 (711)
.-.++|++|++.|-+ .|-|.+. -|. +.+..+.+=++.|.++||.+|++.|
T Consensus 77 S~~mLkd~G~~yvii----GHSERR~-~f~-Etd~~v~~Kv~~al~~gl~pI~CiG 126 (253)
T PRK14567 77 SARMLEDIGCDYLLI----GHSERRS-LFA-ESDEDVFKKLNKIIDTTITPVVCIG 126 (253)
T ss_pred CHHHHHHcCCCEEEE----CcccccC-ccC-CCHHHHHHHHHHHHHCCCEEEEEcC
Confidence 345799999999988 6666654 222 2344566778889999999999987
No 202
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=27.14 E-value=20 Score=35.66 Aligned_cols=66 Identities=26% Similarity=0.399 Sum_probs=42.4
Q ss_pred EEEEEeeCCCC---CcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeeecchhHHHHHHHHHHcCCEEEee
Q 037832 45 LFSGSIHYPRS---TPEMWPDLLKKAKDGGLDIVDTYVFWNGHEPTRGKFYFEGRYDLVRFIKLAQQAGLYVTLR 116 (711)
Q Consensus 45 ~~sg~~hy~r~---~~~~W~~~l~~~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~vilr 116 (711)
+-+|--.|.|+ .|-.-+ +-+.++|++.+-.-- ...--.--|||-....|.+|.++|+++||.+-|-
T Consensus 118 VAaGYaDa~Rvgsv~Pl~~P---~vaa~ag~DvaMvDT---aiKDGkslFdfm~~e~l~eFvd~Ah~hGL~~AlA 186 (235)
T COG1891 118 VAAGYADAHRVGSVSPLLLP---EVAAEAGADVAMVDT---AIKDGKSLFDFMDEEELEEFVDLAHEHGLEVALA 186 (235)
T ss_pred EeccccchhhccCcCccccH---HHHHhcCCCEEEEec---ccccchhHHhhhcHHHHHHHHHHHHHcchHHHhc
Confidence 44555556664 333333 346788988654310 1112233699988889999999999999988654
No 203
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=26.91 E-value=6.5e+02 Score=27.14 Aligned_cols=99 Identities=7% Similarity=-0.107 Sum_probs=53.5
Q ss_pred HHHHHHHHHHC-CCCEEEEcccCCCCCCCCceeeeecchhHHHHHHHHHH-cCCEEEeecCcccccccCCCCCCceeccc
Q 037832 60 WPDLLKKAKDG-GLDIVDTYVFWNGHEPTRGKFYFEGRYDLVRFIKLAQQ-AGLYVTLRIGPYACAEWNFGAFPAWLKFI 137 (711)
Q Consensus 60 W~~~l~~~ka~-G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~-~gL~vilr~GPyicaEw~~GG~P~WL~~~ 137 (711)
-++.++.+++. ++..|=+ |-.. -..+.++|+.+.+ ..+.+++.| |+|.|. ...
T Consensus 202 ~~~~~~~l~~~~~~~~iGi----NC~~----------p~~~~~~l~~~~~~~~~pl~~~P---------NaG~~~--~~~ 256 (304)
T PRK09485 202 LAEAAALLAASPQVVAVGV----NCTA----------PELVTAAIAALRAVTDKPLVVYP---------NSGEVY--DAV 256 (304)
T ss_pred HHHHHHHHhcCCCceEEEe----cCCC----------HHHHHHHHHHHHhccCCcEEEEC---------CCCCCC--CCC
Confidence 45666666543 2444444 4332 2356677777755 366677776 567663 111
Q ss_pred CCcccccCCh-hHHHHHHHHHHHHHHHHHhcccccccCCceEeecccccccchhcccCcchHHHHHHHHHHHH
Q 037832 138 PGMEFRIDNQ-PFELEMQKWVTKIVDMLKAEKLFETQGGPIILSQIENEFELVEWNLGDRARVYGQWAAHMAI 209 (711)
Q Consensus 138 p~~~~R~~d~-~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~ 209 (711)
++......++ .|.+.+++|.+. |=.||+ |+ || .+.+|++.|++.++
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~--------------G~~iiG-------GC----CG-ttP~hI~al~~~l~ 303 (304)
T PRK09485 257 TKTWHGPADDASLGELAPEWYAA--------------GARLIG-------GC----CR-TTPEDIAALAAALK 303 (304)
T ss_pred CCcccCCCChHHHHHHHHHHHHc--------------CCeEEe-------eC----CC-CCHHHHHHHHHHhh
Confidence 2211112233 466666666432 335664 33 45 77889999988763
No 204
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=26.89 E-value=96 Score=33.62 Aligned_cols=59 Identities=25% Similarity=0.284 Sum_probs=40.9
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccC---CCCCCCCc--------eeeeecchhHHHHHHHHHHcCCEEEeec
Q 037832 56 TPEMWPDLLKKAKDGGLDIVDTYVFW---NGHEPTRG--------KFYFEGRYDLVRFIKLAQQAGLYVTLRI 117 (711)
Q Consensus 56 ~~~~W~~~l~~~ka~G~N~V~~yv~W---n~hEp~~G--------~~df~g~~dl~~fl~~a~~~gL~vilr~ 117 (711)
.+..-.++++.+|..|+|++-+-+== ++.=|... +=.|- |+.-||+.|+|.||++|.|+
T Consensus 75 ~kk~~de~fk~ikdn~~Na~ViD~Kdd~G~lty~s~d~~~~~~~sv~~f~---Di~~~iKkaKe~giY~IARi 144 (400)
T COG1306 75 LKKRLDELFKLIKDNNINAFVIDVKDDYGELTYPSSDEINKYTKSVNKFK---DIEPVIKKAKENGIYAIARI 144 (400)
T ss_pred ChhHHHHHHHHHHhCCCCEEEEEecCCCccEeccccchhhhhhhcccccc---ccHHHHHHHHhcCeEEEEEE
Confidence 45566789999999999998753310 11111111 12233 89999999999999999995
No 205
>PF02228 Gag_p19: Major core protein p19; InterPro: IPR003139 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from delta-retroviruses such as Human T-lymphotropic virus 1 and Human T-cell leukemia virus 2 (HTLV-2), both members of the human oncovirus subclass of retroviruses [, ].; GO: 0005198 structural molecule activity, 0019013 viral nucleocapsid; PDB: 1JVR_A.
Probab=26.80 E-value=24 Score=30.45 Aligned_cols=37 Identities=30% Similarity=0.564 Sum_probs=25.7
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeeecchhHHHHHHHHHHc
Q 037832 56 TPEMWPDLLKKAKDGGLDIVDTYVFWNGHEPTRGKFYFEGRYDLVRFIKLAQQA 109 (711)
Q Consensus 56 ~~~~W~~~l~~~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~ 109 (711)
....|-.-+|.+-. .||.|..|||. +|.+||++|.|-
T Consensus 20 s~hhWLNflQaAyR--------------L~PgPS~~DF~---qLr~flk~alkT 56 (92)
T PF02228_consen 20 STHHWLNFLQAAYR--------------LQPGPSSFDFH---QLRNFLKLALKT 56 (92)
T ss_dssp THHHHHHHHHHHHH--------------SS---STTTHH---HHHHHHHHHHT-
T ss_pred CHHHHHHHHHHHHh--------------cCCCCCcccHH---HHHHHHHHHHcC
Confidence 34557777776543 48999999999 999999999863
No 206
>TIGR02635 RhaI_grampos L-rhamnose isomerase, Streptomyces subtype. This clade of sequences is closely related to the L-rhamnose isomerases found in Pseudomonas stutzeri and in a number of the Rhizobiales (TIGR02629). The genes of the family represented here are found in similar genomic contexts which contain genes apparently involved in rhamnose catabolism such as rhamnulose-1-phosphate aldolase (TIGR02632), sugar kinases, and sugar transporters.
Probab=26.73 E-value=8.6e+02 Score=27.37 Aligned_cols=113 Identities=13% Similarity=0.100 Sum_probs=64.3
Q ss_pred eEEEEcCCcEEECCEEeEEEEEEeeCCCCCcccHHHHHHHHHHC-CC-CEEEEcccCCCCCCCCceeeeecchhHHHHHH
Q 037832 27 STVTYDRKGLIINGQRRILFSGSIHYPRSTPEMWPDLLKKAKDG-GL-DIVDTYVFWNGHEPTRGKFYFEGRYDLVRFIK 104 (711)
Q Consensus 27 ~~v~~d~~~~~i~G~p~~~~sg~~hy~r~~~~~W~~~l~~~ka~-G~-N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~ 104 (711)
+.|+.-...|.--|-||..+.. -.-+| +.+...+++.+++.. ++ -.|+..++| +.. .++.++.+
T Consensus 11 ~~~~~~~w~~~~~~tRf~~f~~-~g~~r-~~~e~~~d~~~v~~L~~~~~~v~lH~~~------d~~------~d~~~~~~ 76 (378)
T TIGR02635 11 LKIETPSWAYGNSGTRFKVFHQ-EGAAR-NVFEKIEDAALVHRLTGICPTVALHIPW------DRV------EDYEELAR 76 (378)
T ss_pred cEeeccccccCCCCcccccCCC-CCCCC-CHHHHHHHHHHHHhhcCCCCceeeccCC------ccc------cCHHHHHH
Confidence 4555556666666677644322 11122 233344555555554 22 355665666 222 26779999
Q ss_pred HHHHcCCEEE-eecCcccccccCCCCCCceecccCCcccccCChhHHHHHHHHHHHHHHHHH
Q 037832 105 LAQQAGLYVT-LRIGPYACAEWNFGAFPAWLKFIPGMEFRIDNQPFELEMQKWVTKIVDMLK 165 (711)
Q Consensus 105 ~a~~~gL~vi-lr~GPyicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~ 165 (711)
+++++||.|. +-|+-+-. |.+ ..+ .+-..|+..++..-++..+.+++-+
T Consensus 77 ~l~~~GL~v~~i~p~~f~~--------~~~---~~G-SLt~pD~~vR~~AIe~~k~~idiA~ 126 (378)
T TIGR02635 77 YAEELGLKIGAINPNLFQD--------DDY---KFG-SLTHPDKRIRRKAIDHLLECVDIAK 126 (378)
T ss_pred HHHHcCCceeeeeCCccCC--------ccc---CCC-CCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999987 77652211 111 012 3556788888777777777666555
No 207
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=26.71 E-value=7e+02 Score=29.85 Aligned_cols=100 Identities=18% Similarity=0.148 Sum_probs=57.9
Q ss_pred HHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeeecchhHHHHHHHHHH-cCCEEEeecCcccccccCCCCCCceecccC
Q 037832 60 WPDLLKKAKDGGLDIVDTYVFWNGHEPTRGKFYFEGRYDLVRFIKLAQQ-AGLYVTLRIGPYACAEWNFGAFPAWLKFIP 138 (711)
Q Consensus 60 W~~~l~~~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~-~gL~vilr~GPyicaEw~~GG~P~WL~~~p 138 (711)
.++.++.+.++|+.+|=+ |--. |-..+.+.|+.... ..+.+++.| |+|.|.+-..
T Consensus 186 ~~~~~~~~~~~~~~avGi----NC~~---------~p~~~~~~l~~l~~~~~~pl~vyp---------NaG~~~~~~~-- 241 (612)
T PRK08645 186 LEEALKELVAAGADVVGL----NCGL---------GPYHMLEALERIPIPENAPLSAYP---------NAGLPEYVDG-- 241 (612)
T ss_pred HHHHHHHHHhCCCCEEEe----cCCC---------CHHHHHHHHHHHHhccCceEEEEE---------CCCCCCCCCC--
Confidence 677888887777665555 4321 22356666666655 356777776 6788765221
Q ss_pred CcccccCCh-hHHHHHHHHHHHHHHHHHhcccccccCCceEeecccccccchhcccCcchHHHHHHHHHHHHh
Q 037832 139 GMEFRIDNQ-PFELEMQKWVTKIVDMLKAEKLFETQGGPIILSQIENEFELVEWNLGDRARVYGQWAAHMAIG 210 (711)
Q Consensus 139 ~~~~R~~d~-~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~ 210 (711)
.. ....+| .|.+.+.+|.+ .|=.||+ |+ || .+.+|++.|++++..
T Consensus 242 ~~-~~~~~p~~~~~~~~~~~~--------------~Ga~iiG-------GC----Cg-t~P~hI~~la~~l~~ 287 (612)
T PRK08645 242 RY-VYSANPEYFAEYALEFVE--------------QGVRLIG-------GC----CG-TTPEHIRAMARALKG 287 (612)
T ss_pred cc-ccCCCHHHHHHHHHHHHH--------------hCCCEEe-------Ee----cC-CCHHHHHHHHHHhcc
Confidence 11 122333 34455555532 2446664 33 45 778899999998853
No 208
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=26.55 E-value=1.2e+02 Score=32.77 Aligned_cols=61 Identities=20% Similarity=0.205 Sum_probs=42.9
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcccCCCCCC--CCceeeeecchhHHHHHHHHHHcCCEEEeec
Q 037832 56 TPEMWPDLLKKAKDGGLDIVDTYVFWNGHEP--TRGKFYFEGRYDLVRFIKLAQQAGLYVTLRI 117 (711)
Q Consensus 56 ~~~~W~~~l~~~ka~G~N~V~~yv~Wn~hEp--~~G~~df~g~~dl~~fl~~a~~~gL~vilr~ 117 (711)
.++..++.++.+++.|.+.|-+|.-+..-.+ .++.-.++ ...+.+++++|+++|+.|.+-.
T Consensus 118 ~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~-~e~l~~~~~~A~~~g~~v~~H~ 180 (342)
T cd01299 118 GVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFS-EEELRAIVDEAHKAGLYVAAHA 180 (342)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcC-HHHHHHHHHHHHHcCCEEEEEe
Confidence 4677889999999999999999875432111 11211122 2378899999999999988774
No 209
>COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=26.15 E-value=2.5e+02 Score=30.62 Aligned_cols=58 Identities=17% Similarity=0.198 Sum_probs=43.0
Q ss_pred HHHHHHHHCCCCEEEEcccCCCCCCCCceeeeecchhHHHHHHHHHHcCCEEEeecCcccccccCCCCCCceecc
Q 037832 62 DLLKKAKDGGLDIVDTYVFWNGHEPTRGKFYFEGRYDLVRFIKLAQQAGLYVTLRIGPYACAEWNFGAFPAWLKF 136 (711)
Q Consensus 62 ~~l~~~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~vilr~GPyicaEw~~GG~P~WL~~ 136 (711)
..+...++.|.+||-.--. + .-.+|+.++.+.+++.||.++...|.|.-+.|+ .|+..
T Consensus 52 ~e~~~~~a~Gg~TIVD~T~-------~-----~~GRdv~~m~~vs~atglnIV~~TGfy~~~~~p-----~~~~~ 109 (316)
T COG1735 52 AELKRLMARGGQTIVDATN-------I-----GIGRDVLKMRRVAEATGLNIVAATGFYKAAFHP-----EYFAL 109 (316)
T ss_pred HHHHHHHHcCCCeEeeCCc-------c-----ccCcCHHHHHHHHHHhCCcEEEeccccccccch-----hHHhh
Confidence 4566777789988764111 0 112589999999999999999999999987764 66654
No 210
>PLN03059 beta-galactosidase; Provisional
Probab=26.12 E-value=1.4e+02 Score=37.00 Aligned_cols=40 Identities=25% Similarity=0.391 Sum_probs=28.9
Q ss_pred eEEEEEEecCCCCCCcccCCCCCeeeecccceEEEEEECCEEEEEEe
Q 037832 471 YLWYTTEVFIDPSEGFLYNGQDPLLNIMSAGHGLNVYVNDQLQGLHH 517 (711)
Q Consensus 471 Yl~Y~t~v~~~~~~~~~~~g~~~~L~i~~~~D~~~VfVng~~vG~~~ 517 (711)
..||+++|..+..+ .+..|.+.+.+ ..+|||||+-+|...
T Consensus 620 ~twYK~~Fd~p~g~------Dpv~LDm~gmG-KG~aWVNG~nIGRYW 659 (840)
T PLN03059 620 LTWYKTTFDAPGGN------DPLALDMSSMG-KGQIWINGQSIGRHW 659 (840)
T ss_pred ceEEEEEEeCCCCC------CCEEEecccCC-CeeEEECCccccccc
Confidence 89999999875432 12455555543 568999999999877
No 211
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=26.08 E-value=1.3e+02 Score=34.53 Aligned_cols=73 Identities=21% Similarity=0.338 Sum_probs=51.4
Q ss_pred cCCcEEECCEEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEccc----CCCCC---C------------------
Q 037832 32 DRKGLIINGQRRILFSGSIHYPRSTPEMWPDLLKKAKDGGLDIVDTYVF----WNGHE---P------------------ 86 (711)
Q Consensus 32 d~~~~~i~G~p~~~~sg~~hy~r~~~~~W~~~l~~~ka~G~N~V~~yv~----Wn~hE---p------------------ 86 (711)
.-|+|+||=-| |++ +.+.-++.|+.|....+|+...++- |.+-- |
T Consensus 6 ~~RGlmLDvaR--------~f~--~~~~ik~~Id~ma~~K~N~lHlHLtDdqgwriei~~~P~Lt~~ga~r~~~~~~~~~ 75 (445)
T cd06569 6 EYRGMHLDVAR--------NFH--SKETVLKLLDQMAAYKLNKLHLHLTDDEGWRLEIPGLPELTEVGAKRCHDLSETTC 75 (445)
T ss_pred cccceeeeccC--------CCC--CHHHHHHHHHHHHHhCCceEEEEeecCCCcceeccCCchhhhcccccccccccccc
Confidence 34566666433 443 7888899999999999999998873 53311 0
Q ss_pred --------------CCceeeeecchhHHHHHHHHHHcCCEEEeec
Q 037832 87 --------------TRGKFYFEGRYDLVRFIKLAQQAGLYVTLRI 117 (711)
Q Consensus 87 --------------~~G~~df~g~~dl~~fl~~a~~~gL~vilr~ 117 (711)
..|.|. ..++.++++.|++.|+.||-.+
T Consensus 76 ~~~~~~~~~~~~~~~~g~YT---~~di~eiv~yA~~rgI~VIPEI 117 (445)
T cd06569 76 LLPQLGSGPDTNNSGSGYYS---RADYIEILKYAKARHIEVIPEI 117 (445)
T ss_pred cccccccCcccCcccCCccC---HHHHHHHHHHHHHcCCEEEEcc
Confidence 012222 3599999999999999999663
No 212
>PLN02561 triosephosphate isomerase
Probab=26.03 E-value=1.3e+02 Score=31.86 Aligned_cols=50 Identities=18% Similarity=0.044 Sum_probs=38.3
Q ss_pred HHHHHHHCCCCEEEEcccCCCCCCCCceeeeecchhHHHHHHHHHHcCCEEEeecC
Q 037832 63 LLKKAKDGGLDIVDTYVFWNGHEPTRGKFYFEGRYDLVRFIKLAQQAGLYVTLRIG 118 (711)
Q Consensus 63 ~l~~~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~vilr~G 118 (711)
...++|++|++.|-+ +|-|.+. .|. +.+..+.+=++.|.++||.+|++.|
T Consensus 80 S~~mL~d~G~~~vii----GHSERR~-~f~-Etd~~v~~Kv~~al~~gl~pIvCvG 129 (253)
T PLN02561 80 SAEMLVNLGIPWVIL----GHSERRA-LLG-ESNEFVGDKVAYALSQGLKVIACVG 129 (253)
T ss_pred CHHHHHHcCCCEEEE----CcccccC-ccC-CChHHHHHHHHHHHHCcCEEEEEcC
Confidence 456899999999988 7766665 232 2345667777889999999999987
No 213
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=25.83 E-value=55 Score=33.49 Aligned_cols=16 Identities=44% Similarity=0.736 Sum_probs=14.3
Q ss_pred ceEEEEEcCcccceec
Q 037832 644 SKGLIWVNGHGVGRYW 659 (711)
Q Consensus 644 gKG~vwVNG~nlGRYW 659 (711)
.+|.|||||++|.|.=
T Consensus 55 t~G~i~~~~~dl~~l~ 70 (223)
T COG2884 55 TRGKILVNGHDLSRLK 70 (223)
T ss_pred CCceEEECCeeccccc
Confidence 6799999999999974
No 214
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=25.70 E-value=3.3e+02 Score=31.04 Aligned_cols=84 Identities=18% Similarity=0.105 Sum_probs=56.8
Q ss_pred CcEEECCEEeEEEEEEeeCCCCC---cccHHHHHHHHHHCCCCE----EEEcccCCCCCCCCceeeeecchhHHHHHHHH
Q 037832 34 KGLIINGQRRILFSGSIHYPRST---PEMWPDLLKKAKDGGLDI----VDTYVFWNGHEPTRGKFYFEGRYDLVRFIKLA 106 (711)
Q Consensus 34 ~~~~i~G~p~~~~sg~~hy~r~~---~~~W~~~l~~~ka~G~N~----V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a 106 (711)
++..+++.-|+|+.+.-+-++.+ ++.-+.--+.+++.|++. +.....-|+-.|.+..++++ ..-+.+-|+.|
T Consensus 149 ~a~~~g~~afqiF~~npr~w~~~~~~~~~~~~f~~~~~~~gi~~~~i~~HapYlINLASpd~e~rekS-v~~~~~eL~rA 227 (413)
T PTZ00372 149 NAYNIAGQAFALFLKNQRTWNSPPLSDETIDKFKENCKKYNYDPKFILPHGSYLINLANPDKEKREKS-YDAFLDDLQRC 227 (413)
T ss_pred HHHHcCCCEEEEEcCCCccCCCCCCCHHHHHHHHHHHHHcCCCcceEEeecCceecCCCCCHHHHHHH-HHHHHHHHHHH
Confidence 45667788899998777665542 233344556777888752 23322277777877777766 34567778999
Q ss_pred HHcCCE-EEeecC
Q 037832 107 QQAGLY-VTLRIG 118 (711)
Q Consensus 107 ~~~gL~-vilr~G 118 (711)
.+.|.. |++.||
T Consensus 228 ~~LGa~~VV~HPG 240 (413)
T PTZ00372 228 EQLGIKLYNFHPG 240 (413)
T ss_pred HHcCCCEEEECCC
Confidence 999998 568887
No 215
>PLN03036 glutamine synthetase; Provisional
Probab=25.00 E-value=1.8e+02 Score=33.27 Aligned_cols=65 Identities=25% Similarity=0.396 Sum_probs=46.2
Q ss_pred cHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeeecc----------hhHHHHH--HHHHHcCCEEEeecCcccccccC
Q 037832 59 MWPDLLKKAKDGGLDIVDTYVFWNGHEPTRGKFYFEGR----------YDLVRFI--KLAQQAGLYVTLRIGPYACAEWN 126 (711)
Q Consensus 59 ~W~~~l~~~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~----------~dl~~fl--~~a~~~gL~vilr~GPyicaEw~ 126 (711)
.-++..+.+.++|++.-.+ +||-.||||.|.=. ..+-+++ ++|+++|+.+-.-|=|+. ++|+
T Consensus 231 i~~~i~~a~~~~GI~Ie~~-----~~E~gpGQ~Ei~l~~~d~L~aAD~~~l~R~ivk~VA~~~Gl~ATFMPKP~~-gd~~ 304 (432)
T PLN03036 231 ISDAHYKACLYAGINISGT-----NGEVMPGQWEYQVGPSVGIDAGDHIWCSRYILERITEQAGVVLTLDPKPIE-GDWN 304 (432)
T ss_pred HHHHHHHHHHHCCCCeEEE-----EcCcCCCceEEecCCChHHHHHHHHHHHHHHHHHHHHHhCCEEEEcCCcCC-CCcC
Confidence 3345566889999987665 89999999988621 1222322 679999999998888853 5677
Q ss_pred CCC
Q 037832 127 FGA 129 (711)
Q Consensus 127 ~GG 129 (711)
..|
T Consensus 305 GSG 307 (432)
T PLN03036 305 GAG 307 (432)
T ss_pred CCC
Confidence 666
No 216
>PF08306 Glyco_hydro_98M: Glycosyl hydrolase family 98; InterPro: IPR013191 This domain is the putative catalytic domain of glycosyl hydrolase family 98 proteins.; PDB: 2VNO_B 2VNR_A 2VNG_B 2WMH_A 2WMG_A 2WMF_A 2WMK_A 2WMJ_B 2WMI_B.
Probab=24.94 E-value=73 Score=34.75 Aligned_cols=60 Identities=20% Similarity=0.433 Sum_probs=36.4
Q ss_pred EEEEEEee------CCCCCcccHHHHHHHHHHC-CCCEEEEcccCCCCCCCCceeeeecchhHHHHHHHHHHcCCEEE
Q 037832 44 ILFSGSIH------YPRSTPEMWPDLLKKAKDG-GLDIVDTYVFWNGHEPTRGKFYFEGRYDLVRFIKLAQQAGLYVT 114 (711)
Q Consensus 44 ~~~sg~~h------y~r~~~~~W~~~l~~~ka~-G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~vi 114 (711)
++.||. | +.+++.+-+++.+++--.+ |+|.+|- ||..-++.. ....++|++|+++|-+.|
T Consensus 104 q~~sgG-~~~~y~~~~~~~~~~~~e~fr~Ypnf~G~n~~Eq--fWgf~~~~~--------~~~A~lLkl~akYGGy~i 170 (324)
T PF08306_consen 104 QPSSGG-HFPDYSAYHDIENTWYEEFFRDYPNFQGFNYAEQ--FWGFDDPGS--------EHFADLLKLCAKYGGYFI 170 (324)
T ss_dssp EEEECC-G-TTT-GCCG--HHHHHHHHHH-TTEEEEEEE----TTS--TTHH--------HHHHHHHHHHHHTT-EEE
T ss_pred EecCCC-CCCCccccccCChHHHHHHHHhCccccccccHhh--heecCCchh--------HHHHHHHHHHHHhCceEE
Confidence 345666 7 3344555567777776665 8888887 465555544 378899999999999884
No 217
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=24.86 E-value=1.7e+02 Score=22.92 Aligned_cols=54 Identities=17% Similarity=0.333 Sum_probs=38.4
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeeecchhHHHHHHHHHHcCCEE
Q 037832 58 EMWPDLLKKAKDGGLDIVDTYVFWNGHEPTRGKFYFEGRYDLVRFIKLAQQAGLYV 113 (711)
Q Consensus 58 ~~W~~~l~~~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~v 113 (711)
-.-.+.+.-+.+.|+|.+.++. +...+.....+-|.-. +.++.++..++.|..|
T Consensus 11 G~L~~i~~~l~~~~~nI~~i~~-~~~~~~~~~~v~~~ve-~~~~~~~~L~~~G~~v 64 (65)
T cd04882 11 GGLHEILQILSEEGINIEYMYA-FVEKKGGKALLIFRTE-DIEKAIEVLQERGVEL 64 (65)
T ss_pred cHHHHHHHHHHHCCCChhheEE-EccCCCCeEEEEEEeC-CHHHHHHHHHHCCceE
Confidence 3456778889999999988875 3333334555665533 4889999999999765
No 218
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=24.67 E-value=1.5e+02 Score=34.05 Aligned_cols=55 Identities=20% Similarity=0.330 Sum_probs=44.8
Q ss_pred eCCCCCcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeeecchhHHHHHHHHHHcCCEEEeec
Q 037832 51 HYPRSTPEMWPDLLKKAKDGGLDIVDTYVFWNGHEPTRGKFYFEGRYDLVRFIKLAQQAGLYVTLRI 117 (711)
Q Consensus 51 hy~r~~~~~W~~~l~~~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~vilr~ 117 (711)
.|.+.|.+.-++.++++.+.|+..|+++.+-|.. .++...++.|+++|+.|.+..
T Consensus 89 G~~~~pddvv~~~v~~A~~~Gvd~irif~~lnd~------------~n~~~~v~~ak~~G~~v~~~i 143 (448)
T PRK12331 89 GYRNYADDVVESFVQKSVENGIDIIRIFDALNDV------------RNLETAVKATKKAGGHAQVAI 143 (448)
T ss_pred ccccCchhhHHHHHHHHHHCCCCEEEEEEecCcH------------HHHHHHHHHHHHcCCeEEEEE
Confidence 4566677778889999999999999998876653 258889999999999876553
No 219
>COG3684 LacD Tagatose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=24.63 E-value=59 Score=34.47 Aligned_cols=52 Identities=19% Similarity=0.126 Sum_probs=43.4
Q ss_pred HHHHHHHCCCCEEEEcccCCCCCCCCceeeeecchhHHHHHHHHHHcCCEEEeec
Q 037832 63 LLKKAKDGGLDIVDTYVFWNGHEPTRGKFYFEGRYDLVRFIKLAQQAGLYVTLRI 117 (711)
Q Consensus 63 ~l~~~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~vilr~ 117 (711)
.-+++|+.|-++|-+-|.|..-||+- +-....-+++|...|..++|..+|.|
T Consensus 116 sa~riK~~G~~avK~Lvy~~~D~~e~---neqk~a~ierigsec~aedi~f~lE~ 167 (306)
T COG3684 116 SAKRIKEDGGDAVKFLVYYRSDEDEI---NEQKLAYIERIGSECHAEDLPFFLEP 167 (306)
T ss_pred CHHHHHHhcccceEEEEEEcCCchHH---hHHHHHHHHHHHHHhhhcCCceeEee
Confidence 56789999999999999999999832 22233478999999999999999987
No 220
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=24.33 E-value=4.5e+02 Score=27.72 Aligned_cols=79 Identities=10% Similarity=0.080 Sum_probs=50.0
Q ss_pred HHHHHHHHHCCCCEEEEccc----CCCCCCCCceeeeecchhHHHHHHHHHHcCCEE--EeecCcccccccCCCCCCcee
Q 037832 61 PDLLKKAKDGGLDIVDTYVF----WNGHEPTRGKFYFEGRYDLVRFIKLAQQAGLYV--TLRIGPYACAEWNFGAFPAWL 134 (711)
Q Consensus 61 ~~~l~~~ka~G~N~V~~yv~----Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~v--ilr~GPyicaEw~~GG~P~WL 134 (711)
.+-++.+++.|+++|++++- |..-+. ...+..+|.+.++++++.+ +.-=+||.
T Consensus 14 ~~a~~~~~~~G~~~~qif~~~P~~w~~~~~--------~~~~~~~~~~~~~~~~~~~~~i~~Hapy~------------- 72 (274)
T TIGR00587 14 QAAYNRAAEIGATAFMFFLKSPRWWRRPML--------EEEVIDWFKAALETNKNLSQIVLVHAPYL------------- 72 (274)
T ss_pred HHHHHHHHHhCCCEEEEEecCccccCCCCC--------CHHHHHHHHHHHHHcCCCCcceeccCCee-------------
Confidence 46899999999999999653 322111 1236778888899998863 32334442
Q ss_pred cccCCcccccCChhHHHHHHHHHHHHHHHHH
Q 037832 135 KFIPGMEFRIDNQPFELEMQKWVTKIVDMLK 165 (711)
Q Consensus 135 ~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~ 165 (711)
+.+=+.|+.-+++..+.+.+.++.-+
T Consensus 73 -----iNlas~~~~~r~~sv~~~~~~i~~A~ 98 (274)
T TIGR00587 73 -----INLASPDEEKEEKSLDVLDEELKRCE 98 (274)
T ss_pred -----eecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 12234567777776666666555554
No 221
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=23.71 E-value=6e+02 Score=27.82 Aligned_cols=128 Identities=19% Similarity=0.225 Sum_probs=74.5
Q ss_pred CcccHHHHHHHHHHCC-CCEEEEcccCCCCCC-CCceeeee-cchhHHHHHHHHHHc-CCEEEeecCcccccccCCCCCC
Q 037832 56 TPEMWPDLLKKAKDGG-LDIVDTYVFWNGHEP-TRGKFYFE-GRYDLVRFIKLAQQA-GLYVTLRIGPYACAEWNFGAFP 131 (711)
Q Consensus 56 ~~~~W~~~l~~~ka~G-~N~V~~yv~Wn~hEp-~~G~~df~-g~~dl~~fl~~a~~~-gL~vilr~GPyicaEw~~GG~P 131 (711)
..+.|.|.+.++...+ ...|+. |+.-| .||-=++. ...-++++++.+++. .+-|++-..|.
T Consensus 107 ~~~~~~d~~~~~~~~~~ad~iel----NiScPnt~g~~~l~~~~e~l~~l~~~vk~~~~~Pv~vKl~P~----------- 171 (310)
T COG0167 107 SEEAWADYARLLEEAGDADAIEL----NISCPNTPGGRALGQDPELLEKLLEAVKAATKVPVFVKLAPN----------- 171 (310)
T ss_pred cHHHHHHHHHHHHhcCCCCEEEE----EccCCCCCChhhhccCHHHHHHHHHHHHhcccCceEEEeCCC-----------
Confidence 4677999999999999 899999 77666 45533333 222566677666653 34455555441
Q ss_pred ceecccCCcccccCChhHHHHHHHHHHHHHHHHHhccc---cccc---CCc-eEeec----ccccccchhcccCcchHH-
Q 037832 132 AWLKFIPGMEFRIDNQPFELEMQKWVTKIVDMLKAEKL---FETQ---GGP-IILSQ----IENEFELVEWNLGDRARV- 199 (711)
Q Consensus 132 ~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~---~~~~---gGp-II~~Q----iENEyg~~~~~~~~~~~~- 199 (711)
... +..+++.+.++.. ...| .++ |..-+ ..||.|.+. |..-+.
T Consensus 172 --------------~~d--------i~~iA~~~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLS---G~~ikp~ 226 (310)
T COG0167 172 --------------ITD--------IDEIAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLS---GPPLKPI 226 (310)
T ss_pred --------------HHH--------HHHHHHHHHHcCCcEEEEEeeccccccccccccccccCcCCCCcC---cccchHH
Confidence 111 2223333333221 0111 022 22222 568888763 332222
Q ss_pred HHHHHHHHHHhcCCccceEecCCC
Q 037832 200 YGQWAAHMAIGLNITVPWIMCKQA 223 (711)
Q Consensus 200 y~~~l~~~~~~~g~~vp~~~~~~~ 223 (711)
=+++++++++..+.++|++-+.|.
T Consensus 227 al~~v~~l~~~~~~~ipIIGvGGI 250 (310)
T COG0167 227 ALRVVAELYKRLGGDIPIIGVGGI 250 (310)
T ss_pred HHHHHHHHHHhcCCCCcEEEecCc
Confidence 278999999999889999987764
No 222
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=23.58 E-value=7.6e+02 Score=27.54 Aligned_cols=83 Identities=24% Similarity=0.306 Sum_probs=54.5
Q ss_pred eEEEEcCCcEEECCEEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeeec--chhHHHHHH
Q 037832 27 STVTYDRKGLIINGQRRILFSGSIHYPRSTPEMWPDLLKKAKDGGLDIVDTYVFWNGHEPTRGKFYFEG--RYDLVRFIK 104 (711)
Q Consensus 27 ~~v~~d~~~~~i~G~p~~~~sg~~hy~r~~~~~W~~~l~~~ka~G~N~V~~yv~Wn~hEp~~G~~df~g--~~dl~~fl~ 104 (711)
..|.+ ..+.+.|....++.|..- --..+.-.+.-+.+|+.|+..++-..|= |+.--|.|.| ...+..+-+
T Consensus 105 ~~~~~--~~~~~g~~~~~~iaGpc~--iE~~~~~~~~A~~lk~~g~~~~r~~~~k----pRtsp~~f~g~~~e~l~~L~~ 176 (360)
T PRK12595 105 TIVDV--KGEVIGDGNQSFIFGPCS--VESYEQVEAVAKALKAKGLKLLRGGAFK----PRTSPYDFQGLGVEGLKILKQ 176 (360)
T ss_pred CEEEE--CCEEecCCCeeeEEeccc--ccCHHHHHHHHHHHHHcCCcEEEccccC----CCCCCccccCCCHHHHHHHHH
Confidence 44555 346666544444556411 0135556677788899999999976554 4433456664 457888889
Q ss_pred HHHHcCCEEEeec
Q 037832 105 LAQQAGLYVTLRI 117 (711)
Q Consensus 105 ~a~~~gL~vilr~ 117 (711)
.|++.||.++-.|
T Consensus 177 ~~~~~Gl~~~t~v 189 (360)
T PRK12595 177 VADEYGLAVISEI 189 (360)
T ss_pred HHHHcCCCEEEee
Confidence 9999999988775
No 223
>PF00121 TIM: Triosephosphate isomerase; InterPro: IPR000652 Triosephosphate isomerase (5.3.1.1 from EC) (TIM) [] is the glycolytic enzyme that catalyses the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. TIM plays an important role in several metabolic pathways and is essential for efficient energy production. It is present in eukaryotes as well as in prokaryotes. TIM is a dimer of identical subunits, each of which is made up of about 250 amino-acid residues. A glutamic acid residue is involved in the catalytic mechanism [, ]. The tertiary structure of TIM has eight beta/alpha motifs folded into a barrel structure. The TIM barrel fold occurs ubiquitously and is found in numerous other enzymes that can be involved in energy metabolism, macromolecule metabolism, or small molecule metabolism []. The sequence around the active site residue is perfectly conserved in all known TIM's. Deficiencies in TIM are associated with haemolytic anaemia coupled with a progressive, severe neurological disorder [].; GO: 0004807 triose-phosphate isomerase activity, 0008152 metabolic process; PDB: 2YPI_A 1YPI_A 1NEY_B 1NF0_B 1I45_A 7TIM_A 3YPI_B 2H6R_H 2Y63_A 1N55_A ....
Probab=23.42 E-value=70 Score=33.64 Aligned_cols=51 Identities=24% Similarity=0.146 Sum_probs=37.8
Q ss_pred HHHHHHHHCCCCEEEEcccCCCCCCCCceeeeecchhHHHHHHHHHHcCCEEEeecC
Q 037832 62 DLLKKAKDGGLDIVDTYVFWNGHEPTRGKFYFEGRYDLVRFIKLAQQAGLYVTLRIG 118 (711)
Q Consensus 62 ~~l~~~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~vilr~G 118 (711)
-...++|++|++.|-+ +|-|.+. -|. +.+..+.+=++.|.++||.+|++.|
T Consensus 75 vS~~mL~d~G~~~vii----GHSERR~-~f~-Etd~~i~~Kv~~al~~gl~pIvCvG 125 (244)
T PF00121_consen 75 VSAEMLKDLGCKYVII----GHSERRQ-YFG-ETDEIINKKVKAALENGLTPIVCVG 125 (244)
T ss_dssp HBHHHHHHTTESEEEE----SCHHHHH-HST--BHHHHHHHHHHHHHTT-EEEEEES
T ss_pred hHHHHHHHhhCCEEEe----ccccccC-ccc-cccHHHHHHHHHHHHCCCEEEEEec
Confidence 3456899999999888 6655542 111 3456888889999999999999987
No 224
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=23.35 E-value=2e+02 Score=30.48 Aligned_cols=82 Identities=22% Similarity=0.305 Sum_probs=54.7
Q ss_pred eEEEEcCCcEEECCEEeEEEEEEeeCCCC-CcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeee--cchhHHHHH
Q 037832 27 STVTYDRKGLIINGQRRILFSGSIHYPRS-TPEMWPDLLKKAKDGGLDIVDTYVFWNGHEPTRGKFYFE--GRYDLVRFI 103 (711)
Q Consensus 27 ~~v~~d~~~~~i~G~p~~~~sg~~hy~r~-~~~~W~~~l~~~ka~G~N~V~~yv~Wn~hEp~~G~~df~--g~~dl~~fl 103 (711)
..|.+. .+.+.+..+.++.| +-.+ ..+.-.+.-+.+|+.|....+.|++-+-..| |.|. |..-|..+-
T Consensus 12 s~i~~~--~~~~g~~~~~~IAG---pc~ie~~~~~~~~A~~lk~~~~k~~r~~~~KpRtsp----~s~~g~g~~gl~~l~ 82 (260)
T TIGR01361 12 TVVDVG--GVKIGEGSPIVIAG---PCSVESEEQIMETARFVKEAGAKILRGGAFKPRTSP----YSFQGLGEEGLKLLR 82 (260)
T ss_pred CEEEEC--CEEEcCCcEEEEEe---CCccCCHHHHHHHHHHHHHHHHHhccCceecCCCCC----ccccccHHHHHHHHH
Confidence 345553 35666544566777 2222 4455567778888899988888877644443 3454 456777888
Q ss_pred HHHHHcCCEEEeec
Q 037832 104 KLAQQAGLYVTLRI 117 (711)
Q Consensus 104 ~~a~~~gL~vilr~ 117 (711)
+.|++.||.++-.|
T Consensus 83 ~~~~~~Gl~~~t~~ 96 (260)
T TIGR01361 83 RAADEHGLPVVTEV 96 (260)
T ss_pred HHHHHhCCCEEEee
Confidence 89999999988775
No 225
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=23.30 E-value=1.8e+02 Score=30.86 Aligned_cols=50 Identities=24% Similarity=0.232 Sum_probs=40.3
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeeecchhHHHHHHHHHHcCCEEEee
Q 037832 55 STPEMWPDLLKKAKDGGLDIVDTYVFWNGHEPTRGKFYFEGRYDLVRFIKLAQQAGLYVTLR 116 (711)
Q Consensus 55 ~~~~~W~~~l~~~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~vilr 116 (711)
.|.+.-+++++++.+.|+..|+++++.|. ...+...++.|+++|+.|..-
T Consensus 88 ~p~~~~~~di~~~~~~g~~~iri~~~~~~------------~~~~~~~i~~ak~~G~~v~~~ 137 (275)
T cd07937 88 YPDDVVELFVEKAAKNGIDIFRIFDALND------------VRNLEVAIKAVKKAGKHVEGA 137 (275)
T ss_pred CCcHHHHHHHHHHHHcCCCEEEEeecCCh------------HHHHHHHHHHHHHCCCeEEEE
Confidence 34555688999999999999999887665 237888999999999987753
No 226
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=22.64 E-value=70 Score=30.40 Aligned_cols=50 Identities=24% Similarity=0.440 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHcCCEEEeecCcccccccC-CCCCCceecccCCcccccCChhHHHHHHHHHHHHHHHHHh
Q 037832 98 DLVRFIKLAQQAGLYVTLRIGPYACAEWN-FGAFPAWLKFIPGMEFRIDNQPFELEMQKWVTKIVDMLKA 166 (711)
Q Consensus 98 dl~~fl~~a~~~gL~vilr~GPyicaEw~-~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~ 166 (711)
||..||++|++.|+.|++=.-| +++.|- .-|+ + .+.-++++++|-.++++
T Consensus 37 Dl~l~L~~~k~~g~~~lfVi~P-vNg~wydytG~---------------~---~~~r~~~y~kI~~~~~~ 87 (130)
T PF04914_consen 37 DLQLLLDVCKELGIDVLFVIQP-VNGKWYDYTGL---------------S---KEMRQEYYKKIKYQLKS 87 (130)
T ss_dssp HHHHHHHHHHHTT-EEEEEE-----HHHHHHTT--------------------HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCceEEEecC-CcHHHHHHhCC---------------C---HHHHHHHHHHHHHHHHH
Confidence 9999999999999998766544 444442 1110 0 23445677777777773
No 227
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=22.60 E-value=1.1e+02 Score=32.12 Aligned_cols=58 Identities=17% Similarity=0.122 Sum_probs=36.0
Q ss_pred cHHHHHHHHHHCCCCEEEEcccCC-CCCCCCceeeeecchhHHHHHHHHHHcCCEEEeec
Q 037832 59 MWPDLLKKAKDGGLDIVDTYVFWN-GHEPTRGKFYFEGRYDLVRFIKLAQQAGLYVTLRI 117 (711)
Q Consensus 59 ~W~~~l~~~ka~G~N~V~~yv~Wn-~hEp~~G~~df~g~~dl~~fl~~a~~~gL~vilr~ 117 (711)
..++.++.++++|+++|.+.-... ..+..+-.++. -...+.++.++|+++|+.+.+.+
T Consensus 95 ~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~-~~~~l~~l~~~A~~~Gv~l~lE~ 153 (279)
T TIGR00542 95 IMEKAIQLARDLGIRTIQLAGYDVYYEEHDEETRRR-FREGLKEAVELAARAQVTLAVEI 153 (279)
T ss_pred HHHHHHHHHHHhCCCEEEecCcccccCcCCHHHHHH-HHHHHHHHHHHHHHcCCEEEEee
Confidence 467889999999999997631100 00000000110 01356778899999999999985
No 228
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=22.51 E-value=1.3e+02 Score=31.57 Aligned_cols=46 Identities=30% Similarity=0.506 Sum_probs=35.8
Q ss_pred HHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeeecchhHHHHHHHHHHcCCEEE-eecCccccc
Q 037832 60 WPDLLKKAKDGGLDIVDTYVFWNGHEPTRGKFYFEGRYDLVRFIKLAQQAGLYVT-LRIGPYACA 123 (711)
Q Consensus 60 W~~~l~~~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~vi-lr~GPyica 123 (711)
-.+.++++|++|+ -|+.+| +|.+ +-++.|++.|-..| |-+|||..+
T Consensus 115 l~~~i~~L~~~gI-rVSLFi-----dP~~------------~qi~~A~~~GAd~VELhTG~yA~a 161 (239)
T PRK05265 115 LKPAIARLKDAGI-RVSLFI-----DPDP------------EQIEAAAEVGADRIELHTGPYADA 161 (239)
T ss_pred HHHHHHHHHHCCC-EEEEEe-----CCCH------------HHHHHHHHhCcCEEEEechhhhcC
Confidence 3567888999999 556644 5665 66899999999866 999999765
No 229
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=22.49 E-value=2.7e+02 Score=29.32 Aligned_cols=92 Identities=23% Similarity=0.310 Sum_probs=55.9
Q ss_pred HHHHHHHHHCCCCEEEEcccCCCCCCCCceeeeecchhHHHHHHHHHHcCC--EEEeecCccc-------ccccCCCCCC
Q 037832 61 PDLLKKAKDGGLDIVDTYVFWNGHEPTRGKFYFEGRYDLVRFIKLAQQAGL--YVTLRIGPYA-------CAEWNFGAFP 131 (711)
Q Consensus 61 ~~~l~~~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL--~vilr~GPyi-------caEw~~GG~P 131 (711)
-++|++=.++|.+.+-|-.+.+ . ..+.+|++.|++.|+ .|++.+-|-. .+++-.-.+|
T Consensus 150 ~~~L~~Ki~aGA~f~iTQ~~fd----------~---~~~~~~~~~~~~~gi~vPIi~GI~p~~s~~~l~~~~~~~Gv~vP 216 (274)
T cd00537 150 IKRLKRKVDAGADFIITQLFFD----------N---DAFLRFVDRCRAAGITVPIIPGIMPLTSYKQAKRFAKLCGVEIP 216 (274)
T ss_pred HHHHHHHHHCCCCEEeeccccc----------H---HHHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHHHHhhCCCCC
Confidence 3455555567999999954433 2 278899999999984 4565554532 2355556679
Q ss_pred ceecccCCcccccCChhHHHHHHHHHHHHHHHHHh
Q 037832 132 AWLKFIPGMEFRIDNQPFELEMQKWVTKIVDMLKA 166 (711)
Q Consensus 132 ~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~ 166 (711)
.|+.+.=. ....+.....+.-.++..++++.+.+
T Consensus 217 ~~~~~~l~-~~~~~~~~~~~~g~~~~~~l~~~l~~ 250 (274)
T cd00537 217 DWLLERLE-KLKDDAEAVRAEGIEIAAELCDELLE 250 (274)
T ss_pred HHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99875210 00012233455566677777777763
No 230
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=21.77 E-value=1.8e+02 Score=29.06 Aligned_cols=45 Identities=24% Similarity=0.333 Sum_probs=38.8
Q ss_pred HHHHHHHCCCCEEE-----EcccCCCCCCCCceeeeecchhHHHHHHHHHHcCCEEEee
Q 037832 63 LLKKAKDGGLDIVD-----TYVFWNGHEPTRGKFYFEGRYDLVRFIKLAQQAGLYVTLR 116 (711)
Q Consensus 63 ~l~~~ka~G~N~V~-----~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~vilr 116 (711)
..+.+++.|+.+|= |=|+|+--+..| .+.+.++.++++|+.|++-
T Consensus 19 ~~~~L~~~Gikgvi~DlDNTLv~wd~~~~tp---------e~~~W~~e~k~~gi~v~vv 68 (175)
T COG2179 19 TPDILKAHGIKGVILDLDNTLVPWDNPDATP---------ELRAWLAELKEAGIKVVVV 68 (175)
T ss_pred CHHHHHHcCCcEEEEeccCceecccCCCCCH---------HHHHHHHHHHhcCCEEEEE
Confidence 45679999999886 457899999998 8999999999999998754
No 231
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=21.69 E-value=3.3e+02 Score=30.51 Aligned_cols=91 Identities=20% Similarity=0.323 Sum_probs=55.5
Q ss_pred CCEEeEEEE-EEeeCCCC-----CcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeeecchhHHHHHHHH--HHcC
Q 037832 39 NGQRRILFS-GSIHYPRS-----TPEMWPDLLKKAKDGGLDIVDTYVFWNGHEPTRGKFYFEGRYDLVRFIKLA--QQAG 110 (711)
Q Consensus 39 ~G~p~~~~s-g~~hy~r~-----~~~~W~~~l~~~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a--~~~g 110 (711)
+|...-++| |+|.++-. +.+.-.+.++.+-+.|+|.|+| .|..|--.- +.||..| ..+-
T Consensus 9 ~g~~~s~lgfG~MRlp~~~~~~id~~~~~~~i~~aie~GiNyidT--A~~Yh~g~s-----------E~~lgkaL~~~~R 75 (391)
T COG1453 9 TGDELSILGFGCMRLPLKEQGSIDEENANETIDYAIEHGINYIDT--AWPYHGGES-----------EEFLGKALKDGYR 75 (391)
T ss_pred CCcccceeccceeecccccCCCccHHHHHHHHHHHHHcCCceEee--cccccCCCc-----------hHHHHHHhhhccc
Confidence 444444444 67776543 6666778899999999999999 677654321 1334322 2334
Q ss_pred CEEEeecCcccccccCCCCCCceecccCCcccccCChhHHHHHHHHHHHHHHHHH
Q 037832 111 LYVTLRIGPYACAEWNFGAFPAWLKFIPGMEFRIDNQPFELEMQKWVTKIVDMLK 165 (711)
Q Consensus 111 L~vilr~GPyicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~ 165 (711)
-.|.|-. .+|.|..++. +.++++|++=++.+.
T Consensus 76 ekv~LaT-----------Klp~~~~~~~------------edm~r~fneqLekl~ 107 (391)
T COG1453 76 EKVKLAT-----------KLPSWPVKDR------------EDMERIFNEQLEKLG 107 (391)
T ss_pred ceEEEEe-----------ecCCccccCH------------HHHHHHHHHHHHHhC
Confidence 5577765 5888887643 345566665444443
No 232
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=21.67 E-value=95 Score=37.49 Aligned_cols=57 Identities=14% Similarity=0.275 Sum_probs=37.1
Q ss_pred HHHHHHHHHCCCCEEEEc-c--------cCCCCCCC----Cceeeee----cchhHHHHHHHHHHcCCEEEeec
Q 037832 61 PDLLKKAKDGGLDIVDTY-V--------FWNGHEPT----RGKFYFE----GRYDLVRFIKLAQQAGLYVTLRI 117 (711)
Q Consensus 61 ~~~l~~~ka~G~N~V~~y-v--------~Wn~hEp~----~G~~df~----g~~dl~~fl~~a~~~gL~vilr~ 117 (711)
+++|..+|.+|+|+|+.- | .|.++--- -++|--. -..++.++++.|++.||.|+|..
T Consensus 258 eKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFapssrYgt~~s~~ri~efK~lVd~aHs~GI~VlLDV 331 (757)
T KOG0470|consen 258 EKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAPSSRYGTPESPCRINEFKELVDKAHSLGIEVLLDV 331 (757)
T ss_pred hhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEeecccccccCCCcccchHHHHHHHHHHhhCCcEEehhh
Confidence 345889999999999952 2 24433210 0111000 02389999999999999999885
No 233
>PF05763 DUF835: Protein of unknown function (DUF835); InterPro: IPR008553 The members of this archaebacterial protein entry are around 250-300 amino acid residues in length. The function of these proteins is not known.
Probab=21.27 E-value=6.7e+02 Score=23.92 Aligned_cols=103 Identities=19% Similarity=0.254 Sum_probs=61.9
Q ss_pred ceeeeecchh-HHHHHHHHHHc-CCEEEeecCcccccccCCCCCCceecccCCcccccCChhHHHHHHHHHHHHHHHHHh
Q 037832 89 GKFYFEGRYD-LVRFIKLAQQA-GLYVTLRIGPYACAEWNFGAFPAWLKFIPGMEFRIDNQPFELEMQKWVTKIVDMLKA 166 (711)
Q Consensus 89 G~~df~g~~d-l~~fl~~a~~~-gL~vilr~GPyicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~ 166 (711)
|.|=++.... +..|++...+. ...+|.|--|=..-++ +...-||.+.++- ++-+|.-+... .+.+.+.++
T Consensus 1 Gayl~~~~~~~~~~~l~~~~~~~~~l~itR~~Pe~~~~~--~~~viWlT~~~~~--~~I~Pt~L~~l---~~~i~~fl~- 72 (136)
T PF05763_consen 1 GAYLISSKEKKIYEFLKELSEGRPGLAITRRNPEEWREK--NTPVIWLTKVEGE--NAISPTNLHKL---LDTIVRFLK- 72 (136)
T ss_pred CcEEecCcchhHHHHHHHHhccCcEEEEEecChhhcccc--CCcEEEEeccCCC--CccCchhhHHH---HHHHHHHHH-
Confidence 4566664433 67788777554 4677888545444444 5567899987631 44455444332 333444444
Q ss_pred cccccccCCceEeec------ccccccchhcccCcchHHHHHHHHHHHHhcC
Q 037832 167 EKLFETQGGPIILSQ------IENEFELVEWNLGDRARVYGQWAAHMAIGLN 212 (711)
Q Consensus 167 ~~~~~~~gGpII~~Q------iENEyg~~~~~~~~~~~~y~~~l~~~~~~~g 212 (711)
.+++.||.++ +||.+-+ --+++..|++.+...+
T Consensus 73 -----~~~~~vViiD~lEYL~l~NgF~~--------v~KFL~~LkD~~~~~~ 111 (136)
T PF05763_consen 73 -----ENGNGVVIIDGLEYLILENGFES--------VLKFLASLKDYALLNN 111 (136)
T ss_pred -----hCCCcEEEEecHHHHHHHcCHHH--------HHHHHHHhHHHeeccC
Confidence 2455688887 6666543 3568999999885443
No 234
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=21.23 E-value=86 Score=32.95 Aligned_cols=57 Identities=16% Similarity=0.152 Sum_probs=37.6
Q ss_pred ccHHHHHHHHHHCCCCEEEEcccCCCCCC---CCceeeeecchhHHHHHHHHHHcCCEEEeecC
Q 037832 58 EMWPDLLKKAKDGGLDIVDTYVFWNGHEP---TRGKFYFEGRYDLVRFIKLAQQAGLYVTLRIG 118 (711)
Q Consensus 58 ~~W~~~l~~~ka~G~N~V~~yv~Wn~hEp---~~G~~df~g~~dl~~fl~~a~~~gL~vilr~G 118 (711)
+.+++.++.++++|+.+|.+ |..+.+ .+..+.- -...+.++.++|+++|+.+.+.+-
T Consensus 85 ~~~~~~i~~A~~lG~~~v~~---~~g~~~~~~~~~~~~~-~~~~l~~l~~~a~~~gi~l~lEn~ 144 (279)
T cd00019 85 ERLKDEIERCEELGIRLLVF---HPGSYLGQSKEEGLKR-VIEALNELIDKAETKGVVIALETM 144 (279)
T ss_pred HHHHHHHHHHHHcCCCEEEE---CCCCCCCCCHHHHHHH-HHHHHHHHHHhccCCCCEEEEeCC
Confidence 44678899999999998765 333322 1111110 123677777888899999999874
No 235
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=21.13 E-value=1.5e+02 Score=31.34 Aligned_cols=66 Identities=17% Similarity=0.129 Sum_probs=46.0
Q ss_pred CCCCcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeeecchhHHHHHHHHH-HcCCEEEeecC
Q 037832 53 PRSTPEMWPDLLKKAKDGGLDIVDTYVFWNGHEPTRGKFYFEGRYDLVRFIKLAQ-QAGLYVTLRIG 118 (711)
Q Consensus 53 ~r~~~~~W~~~l~~~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~-~~gL~vilr~G 118 (711)
.+.+.+.-.+..+.+-++|++.|++.++-...+...|...|.....+.++.++.+ +.-+-+++|++
T Consensus 15 ~~f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 81 (266)
T cd07944 15 WDFGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYG 81 (266)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCC
Confidence 4557777788999999999999999888776555667666764444555555443 34444567765
No 236
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=21.00 E-value=2e+02 Score=29.48 Aligned_cols=43 Identities=16% Similarity=0.152 Sum_probs=28.0
Q ss_pred HHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeeecchhHHH---HHHHHHHcCCEEEeec
Q 037832 60 WPDLLKKAKDGGLDIVDTYVFWNGHEPTRGKFYFEGRYDLVR---FIKLAQQAGLYVTLRI 117 (711)
Q Consensus 60 W~~~l~~~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~---fl~~a~~~gL~vilr~ 117 (711)
-+.-+.++|+||.+.|-.| .-.|...+++ ..+.|.++|+++ .|
T Consensus 137 vetAiaml~dmG~~SiKff-------------Pm~Gl~~leE~~avAkA~a~~g~~l--EP 182 (218)
T PF07071_consen 137 VETAIAMLKDMGGSSIKFF-------------PMGGLKHLEELKAVAKACARNGFTL--EP 182 (218)
T ss_dssp HHHHHHHHHHTT--EEEE----------------TTTTTHHHHHHHHHHHHHCT-EE--EE
T ss_pred HHHHHHHHHHcCCCeeeEe-------------ecCCcccHHHHHHHHHHHHHcCcee--CC
Confidence 4678999999999999873 2334444444 457788999988 76
No 237
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=20.99 E-value=1.6e+02 Score=26.96 Aligned_cols=44 Identities=25% Similarity=0.377 Sum_probs=31.4
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeeecchhHHHHHHHHHHcCCEEE
Q 037832 55 STPEMWPDLLKKAKDGGLDIVDTYVFWNGHEPTRGKFYFEGRYDLVRFIKLAQQAGLYVT 114 (711)
Q Consensus 55 ~~~~~W~~~l~~~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~vi 114 (711)
.+++...+.++.+++.|+..|=.. +| ..-.+++++|+++||.++
T Consensus 63 ~~~~~~~~~v~~~~~~g~~~v~~~---------~g-------~~~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 63 VPPDKVPEIVDEAAALGVKAVWLQ---------PG-------AESEELIEAAREAGIRVI 106 (116)
T ss_dssp S-HHHHHHHHHHHHHHT-SEEEE----------TT-------S--HHHHHHHHHTT-EEE
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEE---------cc-------hHHHHHHHHHHHcCCEEE
Confidence 378889999999999998877661 11 255689999999999976
No 238
>PRK04302 triosephosphate isomerase; Provisional
Probab=20.89 E-value=1.8e+02 Score=29.78 Aligned_cols=60 Identities=20% Similarity=0.178 Sum_probs=41.8
Q ss_pred eeCCCCCcccH--HHHHHHHHHCCCCEEEEcccCCCCCCCCceeeeecchhHHHHHHHHHHcCCEEEeecCc
Q 037832 50 IHYPRSTPEMW--PDLLKKAKDGGLDIVDTYVFWNGHEPTRGKFYFEGRYDLVRFIKLAQQAGLYVTLRIGP 119 (711)
Q Consensus 50 ~hy~r~~~~~W--~~~l~~~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~vilr~GP 119 (711)
.|+........ +.-+++++++|++.|-+ .+-|.. -.|. .+.++++.|+++||.+|+..|.
T Consensus 62 q~~~~~~~G~~tg~~~~~~l~~~G~~~vii----~~ser~---~~~~---e~~~~v~~a~~~Gl~~I~~v~~ 123 (223)
T PRK04302 62 QHVDPVEPGSHTGHILPEAVKDAGAVGTLI----NHSERR---LTLA---DIEAVVERAKKLGLESVVCVNN 123 (223)
T ss_pred ccCCCCCCCCchhhhHHHHHHHcCCCEEEE----eccccc---cCHH---HHHHHHHHHHHCCCeEEEEcCC
Confidence 57655433322 23588999999999987 443432 2233 5889999999999999988753
No 239
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=20.86 E-value=1.4e+02 Score=32.78 Aligned_cols=43 Identities=16% Similarity=0.172 Sum_probs=27.1
Q ss_pred cCCcEEECCEEeEEEEEEeeCCCC-CcccHHHHH-HHHHHCCCCEEEE
Q 037832 32 DRKGLIINGQRRILFSGSIHYPRS-TPEMWPDLL-KKAKDGGLDIVDT 77 (711)
Q Consensus 32 d~~~~~i~G~p~~~~sg~~hy~r~-~~~~W~~~l-~~~ka~G~N~V~~ 77 (711)
|.+.+.|||||++++ +.+... ....+-+.+ +.+|++|+.-+-+
T Consensus 150 D~rYikVdGKPv~~I---y~p~~~pd~~~~~~~wr~~a~~~G~~giyi 194 (345)
T PF14307_consen 150 DPRYIKVDGKPVFLI---YRPGDIPDIKEMIERWREEAKEAGLPGIYI 194 (345)
T ss_pred CCCceeECCEEEEEE---ECcccccCHHHHHHHHHHHHHHcCCCceEE
Confidence 678999999999987 333222 122233333 5668889885554
No 240
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=20.74 E-value=73 Score=34.63 Aligned_cols=61 Identities=23% Similarity=0.334 Sum_probs=40.1
Q ss_pred EeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeeecchhHHHHHHHHHHcCCEEE-eec
Q 037832 42 RRILFSGSIHYPRSTPEMWPDLLKKAKDGGLDIVDTYVFWNGHEPTRGKFYFEGRYDLVRFIKLAQQAGLYVT-LRI 117 (711)
Q Consensus 42 p~~~~sg~~hy~r~~~~~W~~~l~~~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~vi-lr~ 117 (711)
..++++-+..--+. |+.|++.+..+-++|+|.|.- +|+.-. |..+|.++|+++|..++ +|-
T Consensus 34 ~~liiGiA~~GG~l-p~~w~~~i~~Ai~~Gl~IvsG-----LH~~L~---------ddpel~~~A~~~g~~i~DvR~ 95 (301)
T PF07755_consen 34 DTLIIGIAPAGGRL-PPSWRPVILEAIEAGLDIVSG-----LHDFLS---------DDPELAAAAKKNGVRIIDVRK 95 (301)
T ss_dssp SEEEE---STTHCC-HCCHHHHHHHHHHTT-EEEE------SSS-HC---------CHHHHHCCHHCCT--EEETTS
T ss_pred CEEEEecCcCCCcC-CHHHHHHHHHHHHcCCCEEec-----Chhhhc---------cCHHHHHHHHHcCCeEeeccC
Confidence 34455544444344 478999999999999999985 565433 67799999999999877 564
No 241
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=20.64 E-value=5e+02 Score=23.92 Aligned_cols=67 Identities=15% Similarity=0.124 Sum_probs=46.4
Q ss_pred ECCEEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeeecchhHHHHHHHHHHcCCEEEeec
Q 037832 38 INGQRRILFSGSIHYPRSTPEMWPDLLKKAKDGGLDIVDTYVFWNGHEPTRGKFYFEGRYDLVRFIKLAQQAGLYVTLRI 117 (711)
Q Consensus 38 i~G~p~~~~sg~~hy~r~~~~~W~~~l~~~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~vilr~ 117 (711)
+.|.-+++.+|..- ..-+++.+.+-++.+.+.|+-.+-+.+-=... ..| ++++++|++++|-++.-|
T Consensus 40 l~~gElvlttg~~~-~~~~~~~~~~~i~~L~~~~~agL~i~~~~~~~-~iP-----------~~~i~~A~~~~lPli~ip 106 (123)
T PF07905_consen 40 LRGGELVLTTGYAL-RDDDEEELREFIRELAEKGAAGLGIKTGRYLD-EIP-----------EEIIELADELGLPLIEIP 106 (123)
T ss_pred CCCCeEEEECCccc-CCCCHHHHHHHHHHHHHCCCeEEEEeccCccc-cCC-----------HHHHHHHHHcCCCEEEeC
Confidence 56666666665433 23256678899999999999888774432222 222 588999999999998665
No 242
>PLN02389 biotin synthase
Probab=20.60 E-value=1.2e+02 Score=34.15 Aligned_cols=47 Identities=19% Similarity=0.355 Sum_probs=32.5
Q ss_pred HHHHHHHHHHCCCCEEEEcccCCCCCCCCcee-------eeecchhHHHHHHHHHHcCCEEE
Q 037832 60 WPDLLKKAKDGGLDIVDTYVFWNGHEPTRGKF-------YFEGRYDLVRFIKLAQQAGLYVT 114 (711)
Q Consensus 60 W~~~l~~~ka~G~N~V~~yv~Wn~hEp~~G~~-------df~g~~dl~~fl~~a~~~gL~vi 114 (711)
=++.++++|++|++.+.. ++ |..|..| +|+ +..+.++.|++.||.|-
T Consensus 177 ~~E~l~~LkeAGld~~~~----~L-eTs~~~y~~i~~~~s~e---~rl~ti~~a~~~Gi~v~ 230 (379)
T PLN02389 177 EKEQAAQLKEAGLTAYNH----NL-DTSREYYPNVITTRSYD---DRLETLEAVREAGISVC 230 (379)
T ss_pred CHHHHHHHHHcCCCEEEe----ee-cCChHHhCCcCCCCCHH---HHHHHHHHHHHcCCeEe
Confidence 468999999999998876 32 2122122 333 55688999999999863
No 243
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=20.52 E-value=1.7e+02 Score=36.00 Aligned_cols=59 Identities=19% Similarity=0.290 Sum_probs=42.1
Q ss_pred HHHHHHHHHHCCCC--EEEEcccCCCCCCCCceeeeecc----hhHHHHHHHHHHcCCEEEeecCccccc
Q 037832 60 WPDLLKKAKDGGLD--IVDTYVFWNGHEPTRGKFYFEGR----YDLVRFIKLAQQAGLYVTLRIGPYACA 123 (711)
Q Consensus 60 W~~~l~~~ka~G~N--~V~~yv~Wn~hEp~~G~~df~g~----~dl~~fl~~a~~~gL~vilr~GPyica 123 (711)
-+++.+.++++|+. ++-+-+.|. ++.=||+-+ .++..|++-.++.|+++++-+-|+|..
T Consensus 313 ~~dvv~~~~~agiPld~~~~DiDyM-----d~ykDFTvd~~~fp~~~~fv~~Lh~~G~kyvliidP~is~ 377 (805)
T KOG1065|consen 313 VRDVVENYRAAGIPLDVIVIDIDYM-----DGYKDFTVDKVWFPDLKDFVDDLHARGFKYVLIIDPFIST 377 (805)
T ss_pred HHHHHHHHHHcCCCcceeeeehhhh-----hcccceeeccccCcchHHHHHHHHhCCCeEEEEeCCcccc
Confidence 37899999999997 444444443 222244321 268899999999999999888888743
No 244
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=20.44 E-value=3.2e+02 Score=28.03 Aligned_cols=127 Identities=14% Similarity=0.159 Sum_probs=67.3
Q ss_pred cccHHHHHHHHHHCCCC-EEEE--cccCCCCCC---CCc--eeeeec-------------chhHHHHHHHHHHcCCEEEe
Q 037832 57 PEMWPDLLKKAKDGGLD-IVDT--YVFWNGHEP---TRG--KFYFEG-------------RYDLVRFIKLAQQAGLYVTL 115 (711)
Q Consensus 57 ~~~W~~~l~~~ka~G~N-~V~~--yv~Wn~hEp---~~G--~~df~g-------------~~dl~~fl~~a~~~gL~vil 115 (711)
++.-.+.++++|+.|+. +|+| |+.|...+. .=+ -+|..+ +..+-+.|+.+.+.|..+.+
T Consensus 53 ~~fl~~l~~~~k~~gi~~~leTnG~~~~~~~~~l~~~~D~~l~DiK~~d~~~~~~~tG~~~~~il~nl~~l~~~g~~v~i 132 (213)
T PRK10076 53 AEFATRFLQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRVLENLRLLVSEGVNVIP 132 (213)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHhcCEEEEeeccCCHHHHHHHHCCCHHHHHHHHHHHHhCCCcEEE
Confidence 35556889999999986 4555 333321111 111 233322 12444566777888888888
Q ss_pred ecCcccccccCCCCCCceecccCCcccccCChhHHHHHHHHHHHHHHHHHhcccccccCCceEeec---------ccccc
Q 037832 116 RIGPYACAEWNFGAFPAWLKFIPGMEFRIDNQPFELEMQKWVTKIVDMLKAEKLFETQGGPIILSQ---------IENEF 186 (711)
Q Consensus 116 r~GPyicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Q---------iENEy 186 (711)
|. |. +|++ ++++.-++++.+|+..+. +. ++ .++-+. +.=+|
T Consensus 133 R~-~v----------------IPg~---nd~~e~i~~ia~~l~~l~--~~--~~------~llpyh~~g~~Ky~~lg~~y 182 (213)
T PRK10076 133 RL-PL----------------IPGF---TLSRENMQQALDVLIPLG--IK--QI------HLLPFHQYGEPKYRLLGKTW 182 (213)
T ss_pred EE-EE----------------ECCC---CCCHHHHHHHHHHHHHcC--Cc--eE------EEecCCccchhHHHHcCCcC
Confidence 85 32 2443 245556666666655431 11 11 011111 11122
Q ss_pred cchhcccCcchHHHHHHHHHHHHhcCCcc
Q 037832 187 ELVEWNLGDRARVYGQWAAHMAIGLNITV 215 (711)
Q Consensus 187 g~~~~~~~~~~~~y~~~l~~~~~~~g~~v 215 (711)
-.. +.....++.++++++.+++.|+.+
T Consensus 183 ~~~--~~~~~~~~~l~~~~~~~~~~gl~~ 209 (213)
T PRK10076 183 SMK--EVPAPSSADVATMREMAERAGFQV 209 (213)
T ss_pred ccC--CCCCcCHHHHHHHHHHHHHcCCeE
Confidence 110 112367788999999999988875
No 245
>KOG0622 consensus Ornithine decarboxylase [Amino acid transport and metabolism]
Probab=20.35 E-value=1.3e+02 Score=33.94 Aligned_cols=63 Identities=17% Similarity=0.176 Sum_probs=41.5
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeeecchhHHHHHHHHHHcCCEE-EeecC
Q 037832 55 STPEMWPDLLKKAKDGGLDIVDTYVFWNGHEPTRGKFYFEGRYDLVRFIKLAQQAGLYV-TLRIG 118 (711)
Q Consensus 55 ~~~~~W~~~l~~~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~gL~v-ilr~G 118 (711)
...+.-+..|+.+|+.|+|.|-+++.=.---+.+-.|.= -..|-..+++++.+.|..+ +|..|
T Consensus 190 ~~~~~~~~lLd~ak~l~lnvvGvsfHvGSgc~d~~~y~~-Ai~dAr~vfd~g~e~Gf~m~~LdiG 253 (448)
T KOG0622|consen 190 CSLDNCRHLLDMAKELELNVVGVSFHVGSGCTDLQAYRD-AISDARNVFDMGAELGFEMDILDIG 253 (448)
T ss_pred CCHHHHHHHHHHHHHcCceEEEEEEEecCCCCCHHHHHH-HHHHHHHHHHHHHhcCceEEEeecC
Confidence 355567889999999999999996543322222222221 1235666778899999984 67775
Done!