BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037834
(91 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 41.6 bits (96), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Query: 5 MQLITNDKFKSAYHRVLSNKEGSRISIGSVFMNNSCSRRYGPIKELL---SEVNPPLYPE 61
+++ITN K+KS HRV++ K+G+R S+ S + S + Y P L+ +E N +YP+
Sbjct: 221 LEVITNGKYKSVXHRVIAQKDGARXSLASFYNPGSDAVIY-PAPALVEKEAEENKQVYPK 279
Query: 62 ITLKD 66
D
Sbjct: 280 FVFDD 284
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 33.1 bits (74), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 5 MQLITNDKFKSAYHRVLSNKEGSRISIGSVFMNNSCSR-RYGPIKELLSEVNPPLYPEIT 63
+++++N K+KS HR L NKE RIS +VF + P+ E++S +P +P T
Sbjct: 275 LEILSNGKYKSILHRGLVNKEKVRIS-WAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRT 333
Query: 64 L 64
Sbjct: 334 F 334
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 33.1 bits (74), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 5 MQLITNDKFKSAYHRVLSNKEGSRISIGSVFMNNSCSR-RYGPIKELLSEVNPPLYPEIT 63
+++++N K+KS HR L NKE RIS +VF + P+ E++S +P +P T
Sbjct: 274 LEILSNGKYKSILHRGLVNKEKVRIS-WAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRT 332
Query: 64 L 64
Sbjct: 333 F 333
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 31.2 bits (69), Expect = 0.14, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 5 MQLITNDKFKSAYHRVLSNKEGSRISIGSVFMNNSCSR-RYGPIKELLSEVNPPLYPEIT 63
+++++N K+KS HR L NKE RIS +VF + P+ E +S +P +P T
Sbjct: 275 LEILSNGKYKSILHRGLVNKEKVRIS-WAVFCEPPKDKIVLKPLPEXVSVESPAKFPPRT 333
Query: 64 L 64
Sbjct: 334 F 334
>pdb|4F1N|A Chain A, Crystal Structure Of Kluyveromyces Polysporus Argonaute
With A Guide Rna
pdb|4F1N|B Chain B, Crystal Structure Of Kluyveromyces Polysporus Argonaute
With A Guide Rna
Length = 1046
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 44/79 (55%), Gaps = 8/79 (10%)
Query: 21 LSNKEGSRISIGSVFMNNSCS--RRYGP-IKELLSEVNPPLYPEITLKDIYNNQSLKNNE 77
+SNK+ ++ G +N S ++ P ++E++S++ ++ LKDIYN+ + ++ E
Sbjct: 147 VSNKQKKKVVPGMGAPSNKASLQKKIDPELEEMVSQITLKFSGKVGLKDIYNDTTTQDTE 206
Query: 78 -----LSALDKLKLASHSG 91
+SA+DK L S G
Sbjct: 207 VQESRMSAIDKTCLLSLLG 225
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 26.2 bits (56), Expect = 5.2, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 5 MQLITNDKFKSAYHRVLS---NKEGSRISIGSVFMNNSCSRRYGPIKELLSEVNPPLYPE 61
++ +TN+ S HRV++ + G F++ + ++ ++ NP YPE
Sbjct: 235 LERLTNNVLPSTVHRVVNPPPERRGVPRYSTPFFLHFASDYEIKTLQNCVTAENPDRYPE 294
Query: 62 ITLKDIYNNQSLKNNELS 79
D + Q L+ +L+
Sbjct: 295 SITADEFLQQRLREIKLA 312
>pdb|1Y1X|A Chain A, Structural Analysis Of A Homolog Of Programmed Cell Death
6 Protein From Leishmania Major Friedlin
pdb|1Y1X|B Chain B, Structural Analysis Of A Homolog Of Programmed Cell Death
6 Protein From Leishmania Major Friedlin
Length = 191
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 8 ITNDKFKSAYHRVLSNKEGSR 28
IT D+FK +H +LS +EG R
Sbjct: 80 ITFDEFKDLHHFILSMREGFR 100
>pdb|3FY6|A Chain A, Structure From The Mobile Metagenome Of V. Cholerae.
Integron Cassette Protein Vch_cass3
pdb|3FY6|B Chain B, Structure From The Mobile Metagenome Of V. Cholerae.
Integron Cassette Protein Vch_cass3
pdb|3FY6|C Chain C, Structure From The Mobile Metagenome Of V. Cholerae.
Integron Cassette Protein Vch_cass3
pdb|3FY6|D Chain D, Structure From The Mobile Metagenome Of V. Cholerae.
Integron Cassette Protein Vch_cass3
Length = 126
Score = 25.8 bits (55), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 11/57 (19%)
Query: 23 NKEGSRISIGSVFMNNSCSRRYGPIKELLSEVNPPLYPEITLKDIYNNQSLKNNELS 79
+K+ IS G+V IK SE P + E TL+DI NN S+ E++
Sbjct: 32 HKDYXEISXGAV-----------TIKATYSENQDPEWSEETLQDIXNNDSVYPPEIT 77
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,491,043
Number of Sequences: 62578
Number of extensions: 81951
Number of successful extensions: 195
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 185
Number of HSP's gapped (non-prelim): 11
length of query: 91
length of database: 14,973,337
effective HSP length: 58
effective length of query: 33
effective length of database: 11,343,813
effective search space: 374345829
effective search space used: 374345829
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)