Query 037836
Match_columns 163
No_of_seqs 54 out of 56
Neff 2.7
Searched_HMMs 29240
Date Mon Mar 25 07:39:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037836.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037836hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1got_G GT-gamma; complex (GTP- 96.2 0.002 6.8E-08 45.4 2.3 56 16-73 8-65 (73)
2 3v5w_G G gamma-I, guanine nucl 95.0 0.021 7.1E-07 41.0 3.6 59 27-87 15-75 (77)
3 2er8_A Regulatory protein Leu3 92.8 0.08 2.7E-06 34.4 3.0 25 23-47 47-71 (72)
4 4dac_A Computationally designe 91.8 0.15 5E-06 30.6 2.9 24 21-44 4-27 (28)
5 1fxk_C Protein (prefoldin); ar 91.7 0.15 5E-06 37.1 3.5 54 21-74 4-59 (133)
6 3ra3_B P2F; coiled coil domain 91.3 0.23 7.8E-06 29.7 3.4 25 21-45 3-27 (28)
7 2pbi_A Regulator of G-protein 90.5 0.1 3.4E-06 46.1 2.0 45 26-72 220-266 (424)
8 1zme_C Proline utilization tra 90.4 0.14 4.7E-06 32.9 2.1 22 25-46 44-65 (70)
9 2wg5_A General control protein 89.9 0.29 9.8E-06 35.7 3.7 35 23-57 12-46 (109)
10 1pwb_A SP-D, PSP-D, pulmonary 87.6 0.39 1.3E-05 35.3 3.1 20 27-46 33-52 (177)
11 1buu_A Protein (mannose-bindin 86.6 0.44 1.5E-05 34.9 2.9 25 22-46 20-44 (168)
12 1dh3_A Transcription factor CR 85.5 1 3.5E-05 29.6 3.9 28 18-45 15-42 (55)
13 1uk5_A BAG-family molecular ch 85.1 1.6 5.6E-05 32.9 5.4 47 2-48 6-53 (111)
14 2l5g_B Putative uncharacterize 84.8 0.99 3.4E-05 29.3 3.5 27 21-47 12-38 (42)
15 1a93_B MAX protein, coiled coi 84.7 0.93 3.2E-05 28.3 3.2 23 23-45 12-34 (34)
16 1nkp_B MAX protein, MYC proto- 84.7 0.95 3.2E-05 30.9 3.6 21 25-45 61-81 (83)
17 2lw1_A ABC transporter ATP-bin 84.6 0.93 3.2E-05 31.6 3.6 25 22-46 19-43 (89)
18 2ke4_A CDC42-interacting prote 84.0 0.62 2.1E-05 34.0 2.6 36 15-50 12-47 (98)
19 2jn6_A Protein CGL2762, transp 83.9 0.13 4.4E-06 34.7 -1.0 27 23-49 64-90 (97)
20 2rjz_A PILO protein; structura 83.2 0.69 2.4E-05 35.0 2.6 46 16-61 6-51 (147)
21 3m9b_A Proteasome-associated A 82.7 1 3.5E-05 38.1 3.7 25 22-46 72-96 (251)
22 1rtm_1 Mannose-binding protein 82.3 1 3.5E-05 31.9 3.1 24 23-46 2-25 (149)
23 1t3j_A Mitofusin 1; coiled coi 82.1 1 3.4E-05 33.4 3.1 33 28-60 50-82 (96)
24 1htn_A Tetranectin; plasminoge 81.6 0.48 1.6E-05 35.0 1.2 24 24-47 21-44 (182)
25 2wuj_A Septum site-determining 81.0 1.5 5.1E-05 28.8 3.3 25 22-46 31-55 (57)
26 1nkp_A C-MYC, MYC proto-oncoge 80.0 1.9 6.5E-05 30.3 3.8 25 22-46 63-87 (88)
27 1hwt_C Protein (heme activator 78.9 1.4 4.8E-05 28.8 2.7 20 25-44 58-77 (81)
28 3bbp_D GRIP and coiled-coil do 78.9 1.6 5.4E-05 31.1 3.1 25 25-49 43-67 (71)
29 2zdi_C Prefoldin subunit alpha 78.5 0.62 2.1E-05 34.8 1.0 54 21-74 12-69 (151)
30 3pbf_A Pulmonary surfactant-as 78.0 2.2 7.5E-05 29.8 3.6 27 20-47 4-30 (148)
31 1zme_C Proline utilization tra 77.6 1.9 6.5E-05 27.4 3.0 23 21-43 47-69 (70)
32 1nlw_A MAD protein, MAX dimeri 77.5 2.2 7.4E-05 29.7 3.4 15 27-41 63-77 (80)
33 3eff_K Voltage-gated potassium 77.2 2.1 7.3E-05 30.8 3.4 28 24-51 110-137 (139)
34 3viq_B Mating-type switching p 77.1 2.5 8.5E-05 30.7 3.7 27 20-46 3-29 (85)
35 1yzm_A FYVE-finger-containing 76.6 2.2 7.6E-05 28.4 3.1 27 20-46 23-49 (51)
36 1xaw_A Occludin; coiled-coil, 76.0 3.1 0.00011 32.4 4.3 47 21-67 62-109 (140)
37 1j2z_A Acyl-[acyl-carrier-prot 75.8 1 3.6E-05 35.9 1.6 35 36-70 223-257 (270)
38 1z0k_B FYVE-finger-containing 75.3 2.5 8.4E-05 29.7 3.2 27 20-46 41-67 (69)
39 3kin_B Kinesin heavy chain; mo 75.1 2.8 9.6E-05 30.8 3.7 22 22-43 93-114 (117)
40 1jnm_A Proto-oncogene C-JUN; B 75.0 2.9 0.0001 27.4 3.4 23 22-44 19-41 (62)
41 2ve7_A Kinetochore protein HEC 74.2 1.1 3.7E-05 37.7 1.4 24 25-48 185-208 (315)
42 2yf2_A C4B binding protein; im 73.9 2.9 0.0001 29.0 3.3 25 21-45 30-54 (65)
43 2lw9_A Unconventionnal myosin- 73.8 3.5 0.00012 27.7 3.5 21 22-42 3-23 (51)
44 1t2k_D Cyclic-AMP-dependent tr 73.1 2.7 9.4E-05 27.4 2.9 24 22-45 19-42 (61)
45 2z5i_A TM, general control pro 73.0 2.7 9.1E-05 27.5 2.8 18 26-43 13-30 (52)
46 2dgc_A Protein (GCN4); basic d 72.7 4.1 0.00014 27.3 3.7 27 20-46 25-51 (63)
47 3rrk_A V-type ATPase 116 kDa s 72.4 2.9 0.0001 34.1 3.5 33 12-44 213-245 (357)
48 2wvr_A Geminin; DNA replicatio 72.0 3.8 0.00013 34.1 4.1 45 24-68 121-166 (209)
49 2ovc_A Potassium voltage-gated 72.0 5.5 0.00019 24.4 3.8 30 18-47 3-32 (33)
50 1nkp_B MAX protein, MYC proto- 71.8 4.1 0.00014 27.7 3.6 22 24-45 53-74 (83)
51 3m91_A Proteasome-associated A 71.4 4.7 0.00016 26.5 3.7 23 22-44 27-49 (51)
52 1cxz_B Protein (PKN); protein- 71.1 3.9 0.00013 29.6 3.6 27 20-46 58-84 (86)
53 3qx3_A DNA topoisomerase 2-bet 70.8 4.8 0.00016 38.9 5.0 40 24-63 733-772 (803)
54 1ci6_A Transcription factor AT 70.4 4.2 0.00014 27.1 3.3 21 25-45 30-50 (63)
55 3coq_A Regulatory protein GAL4 70.1 3.6 0.00012 27.1 3.0 23 24-46 44-66 (89)
56 3trt_A Vimentin; cytoskeleton, 69.9 5.1 0.00018 26.7 3.7 23 24-46 55-77 (77)
57 2wt7_A Proto-oncogene protein 69.5 3.9 0.00013 27.0 3.0 25 21-45 19-43 (63)
58 2j5u_A MREC protein; bacterial 68.9 0.28 9.5E-06 40.1 -3.3 44 20-63 21-64 (255)
59 1hjb_A Ccaat/enhancer binding 68.6 4.6 0.00016 29.0 3.4 13 59-71 71-83 (87)
60 1ci6_A Transcription factor AT 68.5 4.4 0.00015 26.9 3.1 26 20-45 18-43 (63)
61 4dzn_A Coiled-coil peptide CC- 68.5 4.8 0.00016 24.7 3.0 19 26-44 3-21 (33)
62 4fz4_A 0197-18KD, uncharacteri 68.4 4.5 0.00015 32.3 3.7 51 23-73 2-70 (154)
63 1lq7_A Alpha3W; three helix bu 68.0 3.1 0.00011 28.9 2.3 19 26-44 49-67 (67)
64 1j8b_A YBAB; hypothetical prot 67.9 4.1 0.00014 29.9 3.1 30 21-50 11-40 (112)
65 1ybx_A Conserved hypothetical 67.7 4.2 0.00014 31.5 3.3 31 20-50 43-73 (143)
66 3r0s_A Acyl-[acyl-carrier-prot 67.6 4.2 0.00014 32.0 3.3 34 35-69 225-258 (266)
67 3kqg_A Langerin, C-type lectin 67.5 3.4 0.00012 30.0 2.6 26 21-46 12-37 (182)
68 2akf_A Coronin-1A; coiled coil 67.5 5.2 0.00018 24.6 3.0 26 22-47 3-28 (32)
69 3ol1_A Vimentin; structural ge 67.1 5.6 0.00019 29.2 3.7 18 30-47 88-105 (119)
70 2yy0_A C-MYC-binding protein; 67.0 5.3 0.00018 26.2 3.2 23 22-44 23-45 (53)
71 3l4j_A DNA topoisomerase 2; to 67.0 6.5 0.00022 37.8 5.0 40 24-63 706-745 (757)
72 1fxk_A Prefoldin; archaeal pro 66.9 5.9 0.0002 27.1 3.6 24 22-45 12-35 (107)
73 2pr5_A Blue-light photorecepto 66.7 2.3 7.7E-05 27.6 1.4 28 17-44 104-131 (132)
74 1pyi_A Protein (pyrimidine pat 66.2 3.4 0.00012 27.8 2.3 23 24-46 47-69 (96)
75 3efg_A Protein SLYX homolog; x 66.2 3.4 0.00012 28.9 2.3 24 22-45 39-62 (78)
76 1gd2_E Transcription factor PA 65.4 7 0.00024 27.0 3.7 24 21-44 25-48 (70)
77 2zqm_A Prefoldin beta subunit 65.2 6.6 0.00022 27.2 3.6 23 22-44 17-39 (117)
78 1grj_A GREA protein; transcrip 64.9 6.9 0.00024 29.7 4.0 19 31-49 59-77 (158)
79 3iv1_A Tumor susceptibility ge 64.7 6.6 0.00023 28.0 3.6 28 18-45 39-66 (78)
80 1am9_A Srebp-1A, protein (ster 64.3 6.7 0.00023 26.9 3.5 19 27-45 52-70 (82)
81 2yy0_A C-MYC-binding protein; 64.2 7.2 0.00024 25.5 3.4 21 25-45 19-39 (53)
82 3a2a_A Voltage-gated hydrogen 64.2 5.3 0.00018 27.4 2.9 25 23-47 23-47 (58)
83 1wlq_A Geminin; coiled-coil; 2 63.8 7.3 0.00025 28.3 3.7 24 24-47 44-67 (83)
84 3vmx_A Voltage-gated hydrogen 63.8 6.4 0.00022 26.1 3.1 26 21-46 14-39 (48)
85 1t3j_A Mitofusin 1; coiled coi 63.3 7.9 0.00027 28.5 3.9 41 22-62 51-92 (96)
86 1go4_E MAD1 (mitotic arrest de 63.1 6.1 0.00021 29.2 3.3 27 20-46 14-40 (100)
87 1hlo_A Protein (transcription 62.9 5.2 0.00018 27.1 2.7 20 27-46 59-78 (80)
88 1am9_A Srebp-1A, protein (ster 62.9 2.7 9.3E-05 29.0 1.3 27 21-47 53-79 (82)
89 1z0j_B FYVE-finger-containing 62.7 6 0.0002 27.1 2.9 27 20-46 30-56 (59)
90 1q08_A Zn(II)-responsive regul 62.7 20 0.00068 23.9 5.6 21 24-44 45-65 (99)
91 2p22_A Suppressor protein STP2 62.7 5.7 0.0002 31.7 3.3 29 18-46 56-84 (174)
92 3qne_A Seryl-tRNA synthetase, 62.6 10 0.00034 34.2 5.2 47 22-74 75-121 (485)
93 4fla_A Regulation of nuclear P 62.4 9.4 0.00032 29.5 4.4 40 27-66 102-149 (152)
94 1t2k_D Cyclic-AMP-dependent tr 62.2 9.4 0.00032 24.8 3.7 21 25-45 36-56 (61)
95 2nov_A DNA topoisomerase 4 sub 62.1 6.5 0.00022 35.8 3.9 48 20-67 351-398 (496)
96 2dq0_A Seryl-tRNA synthetase; 61.7 12 0.00042 32.9 5.5 48 21-74 72-119 (455)
97 1gu4_A CAAT/enhancer binding p 61.6 8.1 0.00028 27.1 3.5 18 28-45 53-70 (78)
98 3mq7_A Bone marrow stromal ant 61.4 7.1 0.00024 30.1 3.4 19 24-42 70-88 (121)
99 1lwu_B Fibrinogen beta chain; 61.4 6.2 0.00021 33.8 3.5 39 22-60 32-82 (323)
100 1dh3_A Transcription factor CR 61.3 9.2 0.00031 24.9 3.5 24 23-46 27-50 (55)
101 2vz4_A Tipal, HTH-type transcr 61.0 6.1 0.00021 27.5 2.9 26 21-46 77-102 (108)
102 3cve_A Homer protein homolog 1 60.8 7 0.00024 27.4 3.1 33 19-51 1-33 (72)
103 2inr_A DNA topoisomerase 4 sub 60.6 7.2 0.00025 35.7 3.9 48 20-67 375-422 (514)
104 3v1a_A Computational design, M 60.3 7.3 0.00025 25.6 2.9 25 20-44 22-46 (48)
105 1ic2_A Tropomyosin alpha chain 60.1 7.5 0.00025 26.6 3.1 22 24-45 40-61 (81)
106 3nmd_A CGMP dependent protein 60.0 9.7 0.00033 26.9 3.7 14 28-41 43-56 (72)
107 1q08_A Zn(II)-responsive regul 60.0 8 0.00028 25.9 3.2 20 27-46 41-60 (99)
108 1h7c_A Tubulin-specific chaper 59.9 8.6 0.00029 28.2 3.6 38 20-62 68-105 (108)
109 2zqm_A Prefoldin beta subunit 59.8 8.9 0.0003 26.6 3.5 20 25-44 84-103 (117)
110 3ni0_A Bone marrow stromal ant 59.8 5.8 0.0002 29.7 2.7 23 23-45 65-87 (99)
111 1r8d_A Transcription activator 59.5 8 0.00027 26.9 3.2 24 22-45 79-102 (109)
112 2zxx_A Geminin; coiled-coil, c 59.3 11 0.00037 27.0 3.9 19 26-44 35-53 (79)
113 4gfh_A DNA topoisomerase 2; to 58.9 10 0.00035 37.6 4.9 38 25-62 1127-1164(1177)
114 2gkw_A TNF receptor-associated 58.6 9.3 0.00032 29.0 3.7 26 22-47 11-36 (192)
115 1uuj_A Platelet-activating fac 58.5 3.4 0.00012 30.0 1.2 23 21-43 61-83 (88)
116 1gu4_A CAAT/enhancer binding p 58.5 4.7 0.00016 28.3 1.9 18 27-44 45-62 (78)
117 1zvu_A Topoisomerase IV subuni 58.3 8.2 0.00028 36.7 4.0 48 20-67 326-373 (716)
118 1hjb_A Ccaat/enhancer binding 58.0 7.3 0.00025 27.9 2.9 17 25-41 57-73 (87)
119 3err_A Fusion protein of micro 57.4 14 0.00047 33.4 5.2 47 20-72 175-221 (536)
120 2xcs_B DNA gyrase subunit B, D 57.0 9.1 0.00031 36.3 4.1 48 20-67 558-605 (692)
121 1jnm_A Proto-oncogene C-JUN; B 56.7 13 0.00045 24.2 3.7 24 23-46 34-57 (62)
122 1txp_A HnRNP C, heterogeneous 56.6 16 0.00055 21.9 3.7 25 22-46 3-27 (28)
123 2cly_B ATP synthase D chain, m 56.6 9.4 0.00032 29.6 3.5 26 27-52 104-129 (160)
124 4b4t_J 26S protease regulatory 56.4 9.7 0.00033 33.3 3.9 28 21-48 42-69 (405)
125 3bj4_A Potassium voltage-gated 56.3 12 0.00041 24.8 3.4 29 19-47 11-39 (49)
126 3azd_A Short alpha-tropomyosin 56.2 5.2 0.00018 24.5 1.6 24 23-46 9-32 (37)
127 3v86_A De novo design helix; c 56.0 16 0.00055 21.5 3.6 22 23-44 5-26 (27)
128 3d24_B Peroxisome proliferator 56.0 5.3 0.00018 23.7 1.5 21 48-68 4-24 (26)
129 2ve7_A Kinetochore protein HEC 56.0 9 0.00031 32.1 3.5 27 20-46 187-213 (315)
130 3rhf_A Putative polyphosphate 56.0 29 0.001 29.4 6.7 46 19-64 42-102 (289)
131 2doh_C Fragment, plasminogen-b 56.0 11 0.00036 23.0 2.9 22 22-44 5-26 (30)
132 3viq_A SWI5-dependent recombin 55.8 16 0.00053 27.5 4.5 18 21-38 10-27 (122)
133 1x8y_A Lamin A/C; structural p 55.6 13 0.00045 25.8 3.8 25 21-45 24-48 (86)
134 4e6u_A Acyl-[acyl-carrier-prot 55.4 5.5 0.00019 31.0 2.0 29 36-64 230-259 (265)
135 2zvf_A Alanyl-tRNA synthetase; 55.2 12 0.00039 27.6 3.6 23 21-43 35-57 (171)
136 1ses_A Seryl-tRNA synthetase; 55.2 17 0.00059 31.5 5.3 46 21-72 67-112 (421)
137 3mq7_A Bone marrow stromal ant 55.2 12 0.0004 28.9 3.7 25 22-46 75-99 (121)
138 1q06_A Transcriptional regulat 54.9 10 0.00034 27.6 3.2 24 23-46 84-107 (135)
139 1gmj_A ATPase inhibitor; coile 54.8 9.2 0.00031 27.7 2.9 25 22-46 37-65 (84)
140 1uii_A Geminin; human, DNA rep 54.5 13 0.00045 26.9 3.7 24 26-49 47-70 (83)
141 2wt7_A Proto-oncogene protein 54.3 15 0.00052 24.1 3.7 19 24-42 29-47 (63)
142 2qup_A BH1478 protein; structu 54.2 12 0.0004 28.4 3.6 26 16-41 94-119 (145)
143 3hfe_A Potassium voltage-gated 54.0 12 0.0004 23.0 2.8 26 19-44 4-29 (31)
144 3ilw_A DNA gyrase subunit A; D 53.9 11 0.00039 34.1 4.0 48 20-67 337-384 (470)
145 1gmj_A ATPase inhibitor; coile 53.8 13 0.00043 27.0 3.5 25 20-44 46-70 (84)
146 2dq3_A Seryl-tRNA synthetase; 53.8 13 0.00045 32.2 4.3 47 22-74 72-118 (425)
147 2v4h_A NF-kappa-B essential mo 53.6 12 0.0004 28.4 3.5 26 20-45 85-110 (110)
148 1wle_A Seryl-tRNA synthetase; 53.4 16 0.00055 32.8 4.9 45 22-72 120-164 (501)
149 3a7p_A Autophagy protein 16; c 53.2 12 0.00042 29.6 3.7 24 21-44 71-94 (152)
150 2xkj_E Topoisomerase IV; type 53.2 11 0.00037 36.2 3.9 48 20-67 620-667 (767)
151 1hwt_C Protein (heme activator 52.8 10 0.00036 24.5 2.7 18 31-48 57-74 (81)
152 3qfl_A MLA10; coiled-coil, (CC 52.5 10 0.00035 27.0 2.9 18 27-44 21-38 (115)
153 2a26_A Calcyclin-binding prote 52.3 12 0.00042 24.3 3.0 19 27-45 29-47 (50)
154 1gk4_A Vimentin; intermediate 52.1 16 0.00056 25.1 3.8 24 21-44 22-45 (84)
155 3viq_A SWI5-dependent recombin 51.6 13 0.00043 28.0 3.4 28 20-47 2-29 (122)
156 1l8d_A DNA double-strand break 51.6 15 0.00053 25.4 3.6 22 24-45 70-91 (112)
157 1uii_A Geminin; human, DNA rep 51.4 16 0.00053 26.5 3.7 26 22-47 50-75 (83)
158 2lw1_A ABC transporter ATP-bin 50.9 20 0.00068 24.7 4.1 26 20-45 24-49 (89)
159 2dgc_A Protein (GCN4); basic d 50.0 17 0.00057 24.2 3.4 13 33-45 31-43 (63)
160 4b4t_K 26S protease regulatory 50.0 16 0.00053 31.9 4.2 23 21-43 45-67 (428)
161 2fxo_A Myosin heavy chain, car 49.7 15 0.00053 26.9 3.5 25 23-47 102-126 (129)
162 3pbf_A Pulmonary surfactant-as 49.3 7.6 0.00026 27.0 1.7 22 27-48 4-25 (148)
163 2xv5_A Lamin-A/C; structural p 49.1 15 0.00051 25.5 3.2 22 23-44 3-24 (74)
164 1fxk_A Prefoldin; archaeal pro 48.8 15 0.00053 25.0 3.2 24 23-46 6-29 (107)
165 3iv1_A Tumor susceptibility ge 48.7 19 0.00064 25.7 3.7 27 21-47 49-75 (78)
166 3pp5_A BRK1, protein brick1; t 48.5 16 0.00055 25.8 3.3 23 23-45 50-72 (73)
167 2k48_A Nucleoprotein; viral pr 48.4 25 0.00086 26.6 4.5 50 17-72 26-76 (107)
168 2jee_A YIIU; FTSZ, septum, coi 48.2 19 0.00066 25.8 3.7 24 22-45 10-33 (81)
169 1k1f_A Breakpoint cluster regi 48.1 35 0.0012 24.2 5.0 35 9-43 17-51 (72)
170 2qia_A UDP-N-acetylglucosamine 48.1 7.4 0.00025 30.1 1.6 28 37-64 229-256 (262)
171 1pwb_A SP-D, PSP-D, pulmonary 47.8 15 0.00052 26.6 3.3 31 9-39 18-52 (177)
172 3u1c_A Tropomyosin alpha-1 cha 47.7 15 0.00051 26.2 3.1 21 25-45 44-64 (101)
173 2zvf_A Alanyl-tRNA synthetase; 47.5 16 0.00055 26.8 3.4 40 22-62 29-68 (171)
174 1r8e_A Multidrug-efflux transp 47.3 15 0.0005 28.4 3.2 25 22-46 83-107 (278)
175 4fxw_B Splicing factor 1; UHM, 47.2 32 0.0011 26.1 5.0 38 7-44 71-111 (124)
176 3lpx_A GYRA, DNA gyrase, A sub 47.1 14 0.00049 33.9 3.6 48 20-67 326-373 (500)
177 3a7o_A Autophagy protein 16; c 47.0 19 0.00064 25.8 3.4 21 22-42 22-42 (75)
178 4ec6_A Putative uncharacterize 46.7 4.2 0.00014 32.6 0.0 41 25-65 28-72 (161)
179 1l8d_A DNA double-strand break 46.6 19 0.00066 24.9 3.5 20 26-45 65-84 (112)
180 2inr_A DNA topoisomerase 4 sub 45.7 19 0.00064 33.0 4.1 43 25-67 454-501 (514)
181 2a3d_A Protein (de novo three- 45.7 21 0.00073 25.0 3.5 25 25-49 26-50 (73)
182 3gpv_A Transcriptional regulat 45.6 21 0.00072 26.4 3.7 18 28-45 98-115 (148)
183 2lq4_p Lysophosphatidic acid r 45.6 5.8 0.0002 28.3 0.6 20 26-45 14-33 (80)
184 4etp_A Kinesin-like protein KA 45.2 15 0.00053 31.6 3.4 22 24-45 16-37 (403)
185 3a5t_A Transcription factor MA 45.2 4.5 0.00015 30.1 0.0 25 21-45 54-78 (107)
186 1r8d_A Transcription activator 45.1 18 0.00063 25.0 3.2 21 27-47 77-97 (109)
187 2wuj_A Septum site-determining 44.9 10 0.00035 24.7 1.7 20 26-45 28-47 (57)
188 4etp_A Kinesin-like protein KA 44.3 9.8 0.00033 32.9 2.0 22 24-45 9-30 (403)
189 3gpv_A Transcriptional regulat 44.2 22 0.00076 26.2 3.7 25 22-46 99-123 (148)
190 1kd8_A GABH AIV, GCN4 acid bas 44.1 16 0.00055 23.0 2.4 27 23-49 6-32 (36)
191 1kd8_A GABH AIV, GCN4 acid bas 44.0 26 0.00089 22.0 3.4 23 23-45 13-35 (36)
192 2xdj_A Uncharacterized protein 43.9 21 0.00073 25.2 3.4 17 30-46 25-41 (83)
193 4emc_A Monopolin complex subun 43.9 18 0.00062 29.6 3.4 20 26-45 35-54 (190)
194 3q8t_A Beclin-1; autophagy, AT 43.7 19 0.00065 25.7 3.1 24 23-46 9-32 (96)
195 3swk_A Vimentin; cytoskeleton, 43.5 16 0.00054 25.6 2.6 21 28-48 66-86 (86)
196 4e61_A Protein BIM1; EB1-like 43.3 21 0.00071 26.7 3.4 43 26-68 19-73 (106)
197 3lss_A Seryl-tRNA synthetase; 43.1 31 0.001 31.0 5.0 45 24-74 109-154 (484)
198 2wt7_B Transcription factor MA 42.7 27 0.00092 25.3 3.8 21 25-45 48-68 (90)
199 1nlw_A MAD protein, MAX dimeri 42.6 27 0.00093 24.0 3.7 22 23-44 52-73 (80)
200 3t57_A UDP-N-acetylglucosamine 42.5 18 0.00061 29.1 3.1 44 37-86 257-302 (305)
201 2nov_A DNA topoisomerase 4 sub 42.2 26 0.00088 32.0 4.4 44 24-67 429-477 (496)
202 4ati_A MITF, microphthalmia-as 42.2 12 0.00039 27.6 1.8 30 27-56 76-105 (118)
203 3oja_B Anopheles plasmodium-re 42.2 21 0.00073 30.4 3.7 14 53-66 573-586 (597)
204 3he5_A Synzip1; heterodimeric 42.0 18 0.00061 23.8 2.5 34 27-63 5-38 (49)
205 3tnu_B Keratin, type II cytosk 41.8 16 0.00054 26.7 2.5 24 24-47 35-58 (129)
206 3e98_A GAF domain of unknown f 41.8 15 0.00051 29.8 2.6 28 13-45 65-92 (252)
207 3hsq_A Acyl-[acyl-carrier-prot 41.3 17 0.00057 28.2 2.7 29 36-64 223-251 (259)
208 3viq_B Mating-type switching p 41.3 13 0.00045 26.8 2.0 23 21-43 11-33 (85)
209 2w83_C C-JUN-amino-terminal ki 41.2 11 0.00037 27.1 1.5 27 20-46 32-58 (77)
210 3tnu_B Keratin, type II cytosk 41.0 29 0.00098 25.3 3.8 25 22-46 47-71 (129)
211 2rbd_A BH2358 protein; putativ 40.9 31 0.0011 25.6 4.1 26 23-49 52-77 (171)
212 2l5g_B Putative uncharacterize 40.8 24 0.00084 22.7 3.0 27 20-46 4-30 (42)
213 2f23_A Anti-cleavage anti-GREA 40.7 28 0.00094 26.1 3.8 26 25-50 53-78 (156)
214 3gp4_A Transcriptional regulat 40.6 28 0.00096 25.6 3.7 19 26-44 89-107 (142)
215 2wt7_B Transcription factor MA 40.5 30 0.001 25.0 3.8 24 21-44 51-74 (90)
216 1got_B GT-beta; complex (GTP-b 40.1 16 0.00055 27.8 2.4 22 25-46 2-23 (340)
217 1go4_E MAD1 (mitotic arrest de 40.1 26 0.0009 25.8 3.5 26 23-48 73-98 (100)
218 3bs5_A Protein aveugle; sterIl 40.0 27 0.00091 24.9 3.4 31 15-47 73-103 (106)
219 3rrk_A V-type ATPase 116 kDa s 39.8 26 0.00087 28.5 3.7 27 20-46 228-254 (357)
220 1fzc_C Fibrin; blood coagulati 39.7 24 0.00081 30.3 3.6 26 21-46 21-46 (319)
221 2j5u_A MREC protein; bacterial 39.6 21 0.00071 29.0 3.1 24 24-47 35-58 (255)
222 3ol1_A Vimentin; structural ge 39.6 24 0.00083 25.7 3.2 27 20-46 85-115 (119)
223 4eqy_A Acyl-[acyl-carrier-prot 39.4 11 0.00036 30.0 1.3 28 37-64 246-277 (283)
224 3bmb_A Regulator of nucleoside 39.1 15 0.00051 27.0 2.0 41 11-51 4-48 (136)
225 2yf2_A C4B binding protein; im 38.9 34 0.0012 23.7 3.7 24 18-41 34-57 (65)
226 3tnu_A Keratin, type I cytoske 38.9 32 0.0011 25.2 3.8 25 22-46 49-73 (131)
227 3qks_A DNA double-strand break 38.8 12 0.00042 28.1 1.5 20 27-46 170-189 (203)
228 1nog_A Conserved hypothetical 38.7 20 0.0007 28.2 2.9 23 24-46 80-102 (177)
229 2p4v_A Transcription elongatio 38.5 25 0.00087 26.6 3.3 13 18-30 9-21 (158)
230 3t97_C Nuclear pore glycoprote 38.5 25 0.00086 23.9 2.9 17 28-44 29-45 (64)
231 3hh0_A Transcriptional regulat 38.4 56 0.0019 24.1 5.1 9 30-38 92-100 (146)
232 2p4v_A Transcription elongatio 38.2 23 0.00078 26.9 3.0 25 26-50 54-78 (158)
233 2xu6_A MDV1 coiled coil; prote 38.1 39 0.0013 23.9 3.9 31 16-46 32-63 (72)
234 3mov_A Lamin-B1; LMNB1, B-type 38.0 35 0.0012 24.4 3.8 24 22-45 34-57 (95)
235 3na7_A HP0958; flagellar bioge 37.9 26 0.00087 28.0 3.4 21 22-42 94-114 (256)
236 3uul_A Utrophin; spectrin repe 37.8 60 0.002 21.4 4.8 37 11-47 29-65 (118)
237 2p2u_A HOST-nuclease inhibitor 37.8 32 0.0011 26.5 3.8 16 55-70 66-81 (171)
238 3oja_B Anopheles plasmodium-re 37.6 16 0.00055 31.1 2.3 30 19-48 450-479 (597)
239 3mud_A DNA repair protein XRCC 37.6 26 0.00088 28.2 3.3 19 25-43 135-153 (175)
240 3qao_A LMO0526 protein, MERR-l 37.6 33 0.0011 27.5 4.0 30 22-51 87-116 (249)
241 2wvr_A Geminin; DNA replicatio 37.6 30 0.001 28.8 3.8 38 26-63 116-153 (209)
242 4i0x_B ESAT-6-like protein MAB 37.3 29 0.00098 23.7 3.1 19 27-45 27-45 (103)
243 3gp4_A Transcriptional regulat 37.0 32 0.0011 25.3 3.6 24 25-48 81-104 (142)
244 3q8t_A Beclin-1; autophagy, AT 36.9 35 0.0012 24.3 3.6 23 21-43 21-43 (96)
245 2gd5_A Charged multivesicular 36.9 33 0.0011 26.1 3.7 26 20-45 16-41 (179)
246 2l5g_A GPS2 protein, G protein 36.8 32 0.0011 21.8 3.0 19 26-44 16-34 (38)
247 3ku8_A GYRA14, DNA gyrase subu 36.7 13 0.00045 29.0 1.5 48 20-67 15-62 (156)
248 2pn0_A Prokaryotic transcripti 36.6 13 0.00044 27.7 1.3 42 10-51 6-51 (141)
249 1lwu_C Fibrinogen gamma chain; 36.6 30 0.001 29.7 3.7 18 27-44 35-52 (323)
250 4abm_A Charged multivesicular 36.5 39 0.0013 23.5 3.7 24 22-45 56-79 (79)
251 2w83_C C-JUN-amino-terminal ki 36.3 39 0.0013 24.2 3.7 21 23-43 56-76 (77)
252 3p8c_E Probable protein brick1 36.1 29 0.001 24.6 3.0 24 23-46 50-73 (75)
253 2gkw_A TNF receptor-associated 35.9 30 0.001 26.1 3.4 23 23-45 5-27 (192)
254 3hnw_A Uncharacterized protein 35.6 28 0.00097 26.3 3.1 19 25-43 82-100 (138)
255 3u59_A Tropomyosin beta chain; 35.6 12 0.0004 26.5 0.9 16 25-40 86-101 (101)
256 2ic6_A Nucleocapsid protein; h 35.6 17 0.00059 26.0 1.8 43 24-72 4-46 (78)
257 1uk5_A BAG-family molecular ch 35.5 93 0.0032 23.2 5.9 26 9-34 21-46 (111)
258 1t6f_A Geminin; coiled-coil, c 35.5 47 0.0016 21.0 3.6 24 22-45 11-34 (37)
259 1ez3_A Syntaxin-1A; three heli 35.4 22 0.00074 24.8 2.3 28 23-50 10-37 (127)
260 3hh0_A Transcriptional regulat 35.3 30 0.001 25.5 3.2 27 23-49 92-118 (146)
261 2zhg_A Redox-sensitive transcr 35.3 30 0.001 25.8 3.2 23 25-47 97-119 (154)
262 3u1c_A Tropomyosin alpha-1 cha 35.2 15 0.00051 26.2 1.5 16 25-40 86-101 (101)
263 1gax_A Valrs, valyl-tRNA synth 35.1 24 0.00081 33.5 3.1 30 17-46 792-821 (862)
264 3tq7_B Microtubule-associated 35.0 11 0.00036 27.0 0.6 16 53-68 48-63 (82)
265 1gk7_A Vimentin; intermediate 35.0 35 0.0012 21.0 3.0 19 26-44 21-39 (39)
266 2bbw_A Adenylate kinase 4, AK4 34.9 1.1E+02 0.0039 22.8 6.4 49 15-64 181-235 (246)
267 1joc_A EEA1, early endosomal a 34.9 41 0.0014 24.6 3.8 38 20-57 6-44 (125)
268 1m1j_C Fibrinogen gamma chain; 34.8 22 0.00074 31.5 2.7 22 22-43 88-116 (409)
269 3ci3_A Cobalamin adenosyltrans 34.8 21 0.00072 28.5 2.4 23 24-46 95-117 (194)
270 1g6u_A Domain swapped dimer; d 34.8 43 0.0015 21.9 3.5 13 34-46 22-34 (48)
271 1yf2_A Type I restriction-modi 34.6 26 0.00089 27.5 2.9 33 15-47 376-408 (425)
272 2zxx_A Geminin; coiled-coil, c 34.6 38 0.0013 24.1 3.5 38 21-58 37-74 (79)
273 1flk_A TNF receptor associated 34.6 38 0.0013 26.4 3.8 21 27-47 52-72 (228)
274 4adz_A CSOR; transcription, co 34.1 29 0.00099 27.0 3.0 46 18-63 42-87 (136)
275 1fzc_B Fibrin; blood coagulati 34.0 33 0.0011 29.3 3.6 41 20-60 32-84 (328)
276 3f6n_A Virion-associated prote 34.0 28 0.00097 27.0 2.9 22 22-43 6-27 (129)
277 4ew8_A Sensor protein DIVL; si 33.9 16 0.00054 26.9 1.4 35 8-42 7-41 (268)
278 1ca9_A TRAF2, protein (TNF rec 33.7 35 0.0012 25.5 3.4 23 25-47 17-39 (192)
279 4b4t_K 26S protease regulatory 33.7 24 0.00081 30.8 2.7 26 22-47 67-92 (428)
280 3fav_B ESAT-6, 6 kDa early sec 33.6 37 0.0013 22.1 3.1 21 24-44 18-38 (94)
281 3v26_X ORF3, ORF95, probable s 33.4 38 0.0013 23.7 3.3 23 23-45 74-96 (101)
282 4ghu_A TNF receptor-associated 33.3 42 0.0014 25.8 3.8 21 26-46 15-35 (198)
283 4e61_A Protein BIM1; EB1-like 33.2 32 0.0011 25.7 3.0 23 23-45 9-31 (106)
284 2olt_A Hypothetical protein; s 33.0 40 0.0014 25.6 3.7 46 21-66 160-211 (227)
285 2aze_B Transcription factor E2 33.0 20 0.00067 26.1 1.8 23 24-46 5-27 (106)
286 2nt8_A Cobalamin adenosyltrans 32.9 23 0.00079 29.0 2.4 22 24-45 124-145 (223)
287 1yf2_A Type I restriction-modi 32.8 31 0.0011 27.0 3.0 36 14-49 165-200 (425)
288 4dci_A Uncharacterized protein 32.8 38 0.0013 26.4 3.5 24 22-45 33-56 (150)
289 1d66_A Protein (GAL4); protein 32.8 22 0.00075 21.9 1.8 13 33-45 53-65 (66)
290 1zxa_A CGMP-dependent protein 32.5 43 0.0015 23.1 3.4 21 25-45 25-45 (67)
291 3na7_A HP0958; flagellar bioge 32.4 30 0.001 27.6 2.9 18 28-45 93-110 (256)
292 3sja_C Golgi to ER traffic pro 32.4 40 0.0014 23.3 3.2 21 25-45 32-52 (65)
293 3kin_B Kinesin heavy chain; mo 32.4 40 0.0014 24.6 3.4 26 21-46 85-110 (117)
294 2p22_A Suppressor protein STP2 32.1 17 0.00059 28.9 1.5 28 24-51 55-82 (174)
295 1zxa_A CGMP-dependent protein 31.9 52 0.0018 22.7 3.7 21 25-45 32-52 (67)
296 1rty_A YVQK protein; all alpha 31.9 25 0.00086 28.0 2.4 23 24-46 87-109 (193)
297 3p7i_A PHND, subunit of alkylp 31.8 35 0.0012 27.5 3.2 28 24-51 290-317 (321)
298 2gr7_A Adhesin; trimeric autot 31.5 33 0.0011 25.8 2.9 50 18-70 25-74 (129)
299 3vlc_E Golgi to ER traffic pro 31.4 29 0.00098 25.5 2.4 20 29-48 60-79 (94)
300 3i00_A HIP-I, huntingtin-inter 31.3 50 0.0017 24.7 3.8 20 25-44 15-34 (120)
301 1slq_A VP4; beta sandwich, gre 31.2 28 0.00094 30.0 2.6 18 28-45 245-262 (278)
302 3t97_C Nuclear pore glycoprote 30.8 44 0.0015 22.6 3.2 27 22-48 16-42 (64)
303 2ve7_C Kinetochore protein NUF 30.8 24 0.00081 28.8 2.1 20 25-44 155-174 (250)
304 1r8e_A Multidrug-efflux transp 30.7 43 0.0015 25.7 3.5 20 28-47 82-101 (278)
305 4emc_A Monopolin complex subun 30.6 38 0.0013 27.7 3.3 25 22-46 24-48 (190)
306 2wg5_A General control protein 30.4 25 0.00086 25.3 2.0 19 27-45 9-27 (109)
307 3h43_A Proteasome-activating n 30.3 29 0.00098 24.2 2.2 18 32-49 2-19 (85)
308 1ydx_A Type I restriction enzy 29.8 34 0.0012 27.4 2.9 32 16-47 353-384 (406)
309 3efg_A Protein SLYX homolog; x 29.8 52 0.0018 22.8 3.4 24 23-46 12-35 (78)
310 3uun_A Dystrophin; triple heli 29.7 81 0.0028 20.6 4.3 36 12-47 30-65 (119)
311 1woz_A 177AA long conserved hy 29.6 30 0.001 27.2 2.4 22 24-45 79-100 (177)
312 1yke_B RNA polymerase II holoe 29.5 74 0.0025 24.4 4.6 42 24-67 91-132 (151)
313 1auk_A Arylsulfatase A; cerebr 29.5 66 0.0023 27.2 4.7 34 11-44 217-250 (489)
314 1dip_A Delta-sleep-inducing pe 29.4 24 0.00082 25.4 1.7 31 16-46 3-36 (78)
315 2ovj_A Mgcracgap, RAC GTPase-a 29.2 88 0.003 23.6 5.0 23 50-72 70-92 (201)
316 3czp_A Putative polyphosphate 28.9 71 0.0024 28.5 5.0 47 17-63 12-69 (500)
317 3sjb_C Golgi to ER traffic pro 28.8 33 0.0011 25.2 2.4 21 28-48 52-72 (93)
318 3kqg_A Langerin, C-type lectin 28.8 56 0.0019 23.4 3.7 24 20-43 18-41 (182)
319 2v6v_A BUD emergence protein 1 28.7 55 0.0019 24.6 3.7 50 28-77 99-148 (156)
320 3ke4_A Hypothetical cytosolic 28.4 31 0.0011 28.2 2.4 23 24-46 106-128 (213)
321 1ysm_A Calcyclin-binding prote 28.0 46 0.0016 23.2 3.0 17 28-44 29-45 (77)
322 3ra3_A P1C; coiled coil domain 28.0 61 0.0021 19.2 3.0 21 24-44 6-26 (28)
323 1yhn_B RILP, RAB interacting l 27.9 63 0.0022 22.5 3.6 24 21-44 6-29 (65)
324 3u59_A Tropomyosin beta chain; 27.9 58 0.002 22.8 3.5 20 25-44 44-63 (101)
325 3i5c_A Fusion of general contr 27.9 62 0.0021 22.8 3.7 25 22-46 4-28 (206)
326 2ah6_A BH1595, unknown conserv 27.8 32 0.0011 27.8 2.4 22 24-45 100-121 (208)
327 3ljm_A Coil Ser L9C; de novo d 27.7 73 0.0025 19.2 3.4 20 26-45 9-28 (31)
328 2dfs_A Myosin-5A; myosin-V, in 27.6 45 0.0015 32.5 3.7 24 22-45 1020-1043(1080)
329 1qsd_A Protein (beta-tubulin b 27.5 40 0.0014 24.6 2.7 34 21-62 67-100 (106)
330 1ux5_A BNI1 protein; structura 27.4 79 0.0027 26.7 4.8 19 24-42 297-315 (411)
331 1ykh_B RNA polymerase II holoe 27.4 54 0.0019 24.4 3.4 18 25-42 92-109 (132)
332 3f42_A Protein HP0035; helicob 27.3 41 0.0014 24.2 2.7 24 27-50 12-35 (99)
333 2pmr_A Uncharacterized protein 27.2 84 0.0029 22.3 4.2 33 28-61 7-39 (87)
334 1wt6_A Myotonin-protein kinase 26.6 55 0.0019 23.6 3.2 18 27-44 54-71 (81)
335 2w6a_A ARF GTPase-activating p 26.6 74 0.0025 22.0 3.7 17 29-45 38-54 (63)
336 1oxj_A RNA-binding protein sma 26.6 1.1E+02 0.0037 24.6 5.2 46 18-63 50-96 (173)
337 2aze_B Transcription factor E2 26.5 67 0.0023 23.3 3.7 24 22-45 10-40 (106)
338 2g2d_A ATP:cobalamin adenosylt 26.5 23 0.00078 28.2 1.3 23 24-46 94-116 (193)
339 4b4t_M 26S protease regulatory 26.4 64 0.0022 28.2 4.2 15 28-42 56-70 (434)
340 3uux_B Mitochondrial division 26.2 58 0.002 27.5 3.7 29 17-45 189-218 (242)
341 1fmh_A General control protein 26.1 85 0.0029 19.1 3.5 11 35-45 18-28 (33)
342 3bas_A Myosin heavy chain, str 26.1 63 0.0021 22.4 3.4 22 21-42 66-87 (89)
343 3mtu_A Tropomyosin alpha-1 cha 26.1 58 0.002 22.2 3.1 18 28-45 12-29 (75)
344 1t3u_A Conserved hypothetical 26.1 76 0.0026 21.9 3.8 17 27-43 77-93 (104)
345 1lwu_C Fibrinogen gamma chain; 25.8 58 0.002 27.9 3.7 14 30-43 24-37 (323)
346 1zke_A Hypothetical protein HP 25.6 32 0.0011 25.0 1.8 26 23-48 50-75 (83)
347 1v9d_A Diaphanous protein homo 25.5 85 0.0029 25.9 4.6 23 23-45 215-237 (340)
348 1vcs_A Vesicle transport throu 25.5 67 0.0023 22.7 3.5 26 20-45 69-94 (102)
349 1wvt_A Hypothetical protein ST 25.3 23 0.00077 27.8 1.0 22 25-46 78-99 (172)
350 2ve7_C Kinetochore protein NUF 25.3 29 0.001 28.3 1.7 39 23-61 160-199 (250)
351 2idx_A COB(I)yrinic acid A,C-d 25.3 30 0.001 27.6 1.7 23 24-46 93-115 (196)
352 1ucv_A Ephrin type-A receptor 25.2 46 0.0016 22.2 2.5 26 19-51 55-80 (81)
353 1gk6_A Vimentin; intermediate 25.2 74 0.0025 20.7 3.4 20 23-42 5-24 (59)
354 1wy1_A Hypothetical protein PH 25.2 27 0.00093 27.3 1.5 22 24-46 81-102 (172)
355 2v4h_A NF-kappa-B essential mo 25.2 58 0.002 24.6 3.2 20 24-43 44-63 (110)
356 1fzc_C Fibrin; blood coagulati 25.2 1E+02 0.0036 26.3 5.2 19 26-44 19-37 (319)
357 2ic9_A Nucleocapsid protein; h 25.1 26 0.0009 25.9 1.3 43 24-72 4-46 (96)
358 3h6p_C ESAT-6-like protein ESX 25.0 23 0.00078 23.6 0.9 22 23-44 18-39 (96)
359 3he4_B Synzip5; heterodimeric 25.0 65 0.0022 20.9 3.0 18 25-42 20-37 (46)
360 3bas_A Myosin heavy chain, str 25.0 59 0.002 22.5 3.1 27 19-45 8-34 (89)
361 1jcd_A Major outer membrane li 24.9 83 0.0028 20.6 3.6 22 23-44 9-30 (52)
362 1r8i_A TRAC; VIRB5, helical bu 24.9 67 0.0023 25.1 3.7 26 24-49 21-46 (213)
363 4aj5_1 SKA3, spindle and kinet 24.9 78 0.0027 23.6 3.8 36 26-63 43-78 (101)
364 2xv5_A Lamin-A/C; structural p 24.7 84 0.0029 21.6 3.8 23 21-43 8-30 (74)
365 3ilw_A DNA gyrase subunit A; D 24.7 73 0.0025 28.9 4.4 44 24-67 415-463 (470)
366 2wq1_A General control protein 24.7 67 0.0023 19.8 2.9 23 24-46 6-28 (33)
367 1c94_A Retro-GCN4 leucine zipp 24.6 85 0.0029 19.6 3.4 30 19-48 3-36 (38)
368 1nkp_A C-MYC, MYC proto-oncoge 24.5 79 0.0027 21.9 3.6 18 27-44 54-71 (88)
369 3n1e_A Vacuolar protein sortin 24.5 56 0.0019 25.1 3.1 21 30-50 112-132 (141)
370 3g9r_A Fusion complex of HIV-1 24.3 59 0.002 20.9 2.7 15 23-37 26-40 (42)
371 3s4r_A Vimentin; alpha-helix, 24.3 60 0.002 22.9 3.0 13 30-42 75-87 (93)
372 2zhy_A ATP:COB(I)alamin adenos 24.2 34 0.0012 27.0 1.9 22 24-45 86-107 (183)
373 3msx_B RHO GTPase-activating p 24.1 1.3E+02 0.0043 22.5 5.0 13 59-71 86-98 (201)
374 4b4t_L 26S protease subunit RP 24.1 71 0.0024 27.9 4.1 17 30-46 84-100 (437)
375 2rkh_A Putative APHA-like tran 23.9 41 0.0014 26.1 2.3 26 24-49 121-146 (180)
376 3mxz_A Tubulin-specific chaper 23.8 33 0.0011 25.5 1.6 40 20-63 69-109 (116)
377 1fxk_C Protein (prefoldin); ar 23.8 66 0.0023 22.9 3.2 24 25-48 22-45 (133)
378 2p22_C Protein SRN2; endosome, 23.7 71 0.0024 25.3 3.7 36 20-62 130-165 (192)
379 1a92_A Delta antigen; leucine 23.5 57 0.0019 21.7 2.6 25 26-50 15-39 (50)
380 1q06_A Transcriptional regulat 23.5 47 0.0016 24.0 2.4 21 27-47 81-101 (135)
381 2zdi_C Prefoldin subunit alpha 23.5 68 0.0023 23.6 3.3 21 25-45 98-118 (151)
382 3ghg_C Fibrinogen gamma chain; 23.4 85 0.0029 27.9 4.5 25 23-47 89-113 (411)
383 3u06_A Protein claret segregat 23.3 65 0.0022 28.0 3.6 18 27-44 19-36 (412)
384 1buu_A Protein (mannose-bindin 23.3 68 0.0023 23.1 3.3 18 23-40 28-45 (168)
385 2efr_A General control protein 23.3 60 0.0021 25.3 3.1 18 26-43 99-116 (155)
386 4h9n_C Death domain-associated 23.3 52 0.0018 27.1 2.8 21 20-40 11-31 (212)
387 2ke4_A CDC42-interacting prote 23.2 56 0.0019 23.5 2.7 23 24-46 61-83 (98)
388 3qao_A LMO0526 protein, MERR-l 23.2 70 0.0024 25.6 3.6 19 28-46 79-97 (249)
389 4gfh_A DNA topoisomerase 2; to 23.2 94 0.0032 30.9 5.1 47 23-71 1016-1062(1177)
390 2fxo_A Myosin heavy chain, car 23.2 84 0.0029 22.9 3.7 27 21-47 72-98 (129)
391 2oqq_A Transcription factor HY 23.1 76 0.0026 20.4 3.0 15 26-40 18-32 (42)
392 2pnv_A Small conductance calci 23.1 80 0.0028 20.0 3.1 19 27-45 18-36 (43)
393 3fau_A NEDD4-binding protein 2 23.0 77 0.0026 20.9 3.2 26 15-41 3-28 (82)
394 1wmi_B RELB, hypothetical prot 22.9 64 0.0022 22.5 2.9 24 23-46 9-32 (67)
395 3fk2_A Glucocorticoid receptor 22.9 1.1E+02 0.0038 23.9 4.7 19 53-71 124-142 (246)
396 4dzo_A Mitotic spindle assembl 22.8 35 0.0012 25.4 1.6 20 25-44 4-23 (123)
397 1ydx_A Type I restriction enzy 22.8 48 0.0016 26.5 2.5 35 16-50 165-199 (406)
398 2pbi_B Guanine nucleotide-bind 22.8 55 0.0019 25.2 2.8 24 22-45 8-31 (354)
399 3tnu_A Keratin, type I cytoske 22.8 83 0.0028 22.9 3.6 24 24-47 37-60 (131)
400 2d9i_A NEDD4-binding protein 2 22.7 75 0.0026 21.6 3.2 31 9-40 5-35 (96)
401 2pms_C Pneumococcal surface pr 22.5 68 0.0023 24.6 3.2 27 24-50 67-93 (125)
402 2ynq_A ESSB; membrane protein, 22.5 88 0.003 24.8 3.9 32 15-47 120-151 (161)
403 1ik9_A DNA repair protein XRCC 22.5 78 0.0027 25.4 3.7 9 55-63 160-168 (213)
404 3lbx_A Spectrin alpha chain, e 22.5 75 0.0026 23.2 3.4 36 13-48 83-118 (161)
405 3m62_A Ubiquitin conjugation f 22.4 61 0.0021 31.9 3.6 30 18-47 402-431 (968)
406 3d5a_X RF1, peptide chain rele 22.4 65 0.0022 28.2 3.4 22 23-44 74-95 (354)
407 1rh4_A Right-handed coiled coi 22.2 62 0.0021 20.0 2.4 16 20-35 19-34 (35)
408 1qsd_A Protein (beta-tubulin b 22.2 1.2E+02 0.0041 22.0 4.4 9 53-61 72-80 (106)
409 3oja_A Leucine-rich immune mol 22.2 64 0.0022 27.0 3.3 17 28-44 445-461 (487)
410 3zbh_A ESXA; unknown function, 22.0 86 0.0029 20.1 3.3 18 27-44 25-42 (99)
411 2p61_A Hypothetical protein TM 22.0 81 0.0028 24.4 3.6 25 19-43 106-130 (162)
412 1zvu_A Topoisomerase IV subuni 22.0 74 0.0025 30.3 4.0 44 24-67 401-449 (716)
413 2oo2_A Hypothetical protein AF 21.7 79 0.0027 22.5 3.2 19 28-46 9-27 (86)
414 3r46_A Coiled coil helix L24D; 21.7 88 0.003 19.3 3.0 20 26-45 3-22 (35)
415 1flk_A TNF receptor associated 21.5 75 0.0026 24.7 3.4 23 24-46 42-64 (228)
416 4fi5_A Nucleoprotein; structur 21.5 39 0.0013 25.7 1.6 23 50-72 41-63 (113)
417 1qzv_F Plant photosystem I: su 21.4 1.1E+02 0.0038 24.2 4.3 40 27-66 15-54 (154)
418 3f31_A Spectrin alpha chain, b 21.3 54 0.0018 23.5 2.3 35 12-46 72-106 (149)
419 2lxm_B Charged multivesicular 21.3 92 0.0032 21.0 3.3 17 18-34 20-36 (57)
420 3o0z_A RHO-associated protein 21.2 94 0.0032 24.7 3.9 22 22-43 87-108 (168)
421 3onj_A T-snare VTI1; helix, HA 21.2 85 0.0029 21.9 3.3 26 20-45 67-93 (97)
422 3cvf_A Homer-3, homer protein 21.1 58 0.002 23.0 2.4 29 20-48 8-36 (79)
423 3lay_A Zinc resistance-associa 21.1 76 0.0026 24.9 3.3 18 25-42 113-130 (175)
424 4ghu_A TNF receptor-associated 21.0 72 0.0025 24.5 3.1 21 25-45 7-27 (198)
425 4fm3_A Uncharacterized hypothe 21.0 84 0.0029 23.0 3.3 22 22-43 75-96 (98)
426 1m7k_A Silencer of death domai 20.9 62 0.0021 23.7 2.6 30 19-48 18-47 (99)
427 1wwv_A Connector enhancer of k 20.7 28 0.00095 24.4 0.6 33 14-51 58-90 (91)
428 2xkj_E Topoisomerase IV; type 20.5 82 0.0028 30.2 4.0 42 26-67 697-743 (767)
429 3rag_A Uncharacterized protein 20.5 65 0.0022 26.6 2.9 30 30-63 99-128 (242)
430 1xdn_A RNA editing ligase MP52 20.4 1E+02 0.0035 26.2 4.2 32 13-47 70-101 (277)
431 2c5k_T Syntaxin TLG1, T-snare 20.3 97 0.0033 21.9 3.5 25 16-43 69-93 (95)
432 1bg1_A Protein (transcription 20.3 65 0.0022 30.1 3.2 33 18-50 12-45 (596)
433 2gtl_M Hemoglobin linker chain 20.2 73 0.0025 26.0 3.1 41 24-69 10-50 (217)
434 3plt_A Sphingolipid long chain 20.2 77 0.0026 26.4 3.3 12 50-61 183-194 (234)
435 1zbt_A RF-1, peptide chain rel 20.2 74 0.0025 28.0 3.4 7 68-74 126-132 (371)
436 2vs0_A Virulence factor ESXA; 20.1 1E+02 0.0034 19.7 3.3 17 28-44 23-39 (97)
437 3byi_A RHO GTPase activating p 20.1 1.5E+02 0.005 22.5 4.7 18 55-72 94-111 (214)
438 1sf9_A YFHH hypothetical prote 20.1 66 0.0023 24.9 2.7 26 27-52 34-59 (128)
No 1
>1got_G GT-gamma; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: a.137.3.1 PDB: 1tbg_E 2trc_G 1b9y_B 1b9x_B 1a0r_G*
Probab=96.24 E-value=0.002 Score=45.41 Aligned_cols=56 Identities=27% Similarity=0.443 Sum_probs=41.4
Q ss_pred CchhhhHhHHHHHHHHHHHHHHHHHHhhhcccCchhhhhHHHHHhhh--hcCCCCccccc
Q 037836 16 DLYGKRRELAKVQVLEREISFLEEELKTVDRFHPASRSCKEVADFVV--AKSDPLIPVNR 73 (163)
Q Consensus 16 D~~GKhR~~Aelq~LeqEI~fLEEEL~~LE~~~paS~~CKEv~~~Ve--s~pDPLLP~t~ 73 (163)
|..---+-++.+++|.+++.+|+.||+ ++.+ ++|.++.|++.|++ +.-||||+--.
T Consensus 8 ~~~~~~~~~~~~~~lr~~veqLr~el~-~~Ri-kVS~aa~~L~~Yce~~~~~DpLl~g~~ 65 (73)
T 1got_G 8 DPVINIEDLTEKDKLKMEVDQLKKEVT-LERM-LVSKCCEEFRDYVEERSGEDPLVKGIP 65 (73)
T ss_dssp --------CTHHHHHHHHHHHHHHHTT-CCCC-CHHHHHHHHHHHHHHHGGGCHHHHCCC
T ss_pred CchhhhcccccHHHHHHHHHHHHHHHC-Cchh-hHHHHHHHHHHHHHhcCCCCCCcCCCC
Confidence 333344566889999999999999994 5554 79999999999999 56999997543
No 2
>3v5w_G G gamma-I, guanine nucleotide-binding protein G(I)/G(S)/G(O) gamma-2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Bos taurus} PDB: 1xhm_B 3pvu_G* 3cik_G 3krw_G* 3krx_G* 3psc_G 1omw_G* 3pvw_G* 3uzs_G 1gp2_G* 1gg2_G* 2bcj_G* 3ah8_G* 2qns_B 3kj5_B 3sn6_G*
Probab=94.97 E-value=0.021 Score=41.04 Aligned_cols=59 Identities=20% Similarity=0.346 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHhhhcccCchhhhhHHHHHhhhh--cCCCCcccccCCCchhhHHHHHhC
Q 037836 27 VQVLEREISFLEEELKTVDRFHPASRSCKEVADFVVA--KSDPLIPVNRKNRRSCRFWKWLCG 87 (163)
Q Consensus 27 lq~LeqEI~fLEEEL~~LE~~~paS~~CKEv~~~Ves--~pDPLLP~t~g~~~s~~~~rW~~~ 87 (163)
|+++.+.+..|.-|.. +|.+ +||.+.+||++|++. ..||||--.....|.++=.+|+..
T Consensus 15 i~q~rk~VeQLr~Ea~-i~Ri-kVSqaaadL~~yc~~~~~~DpLl~Gvp~~~NPFkeKk~~c~ 75 (77)
T 3v5w_G 15 IAQARKLVEQLKMEAN-IDRI-KVSKAAADLMAYCEAHAKEDPLLTPVPASENPFREKKFFSA 75 (77)
T ss_dssp HHHHHHHHHHHHHHHS-SCCC-CHHHHHHHHHHHHHHSGGGCTTTSCCCGGGCTTTTC-----
T ss_pred HHHHHHHHHHHHHHhc-cchh-hHHHHHHHHHHHHHhcCCCCCCcCCCCCCCCCCCCCcCccc
Confidence 5666667777776654 5554 699999999999997 789999655555576666666653
No 3
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=92.81 E-value=0.08 Score=34.43 Aligned_cols=25 Identities=16% Similarity=0.219 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhccc
Q 037836 23 ELAKVQVLEREISFLEEELKTVDRF 47 (163)
Q Consensus 23 ~~Aelq~LeqEI~fLEEEL~~LE~~ 47 (163)
....|+.||++|..||+.|++|+..
T Consensus 47 ~~~~~~~Le~ri~~Le~~l~~l~~~ 71 (72)
T 2er8_A 47 KRARNEAIEKRFKELTRTLTNLTSD 71 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC---
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3477999999999999999998754
No 4
>4dac_A Computationally designed crystal forming protein; alpha-helix, three-helix bundle, coiled-coil protein, DE NOV computational protein design; 2.10A {Synthetic}
Probab=91.77 E-value=0.15 Score=30.60 Aligned_cols=24 Identities=33% Similarity=0.386 Sum_probs=20.2
Q ss_pred hHhHHHHHHHHHHHHHHHHHHhhh
Q 037836 21 RRELAKVQVLEREISFLEEELKTV 44 (163)
Q Consensus 21 hR~~Aelq~LeqEI~fLEEEL~~L 44 (163)
.++-|.+++||+|++-||.|...|
T Consensus 4 ykldanvkrlekevgklegevarl 27 (28)
T 4dac_A 4 YKLDANVKRLEKEVGKLEGEVARL 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred eeccccHHHHHHHHhhhhhhhhhc
Confidence 357789999999999999987654
No 5
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=91.70 E-value=0.15 Score=37.10 Aligned_cols=54 Identities=11% Similarity=0.262 Sum_probs=43.6
Q ss_pred hHhHHHHHHHHHHHHHHHHHHhhhcccCchhhhhHHHHHhhh--hcCCCCcccccC
Q 037836 21 RRELAKVQVLEREISFLEEELKTVDRFHPASRSCKEVADFVV--AKSDPLIPVNRK 74 (163)
Q Consensus 21 hR~~Aelq~LeqEI~fLEEEL~~LE~~~paS~~CKEv~~~Ve--s~pDPLLP~t~g 74 (163)
.++++.+++|++++..|++++++|+...+--.-.+|.++.+. ...+=|.|++.+
T Consensus 4 ~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~l~~~~~~~~lvplg~~ 59 (133)
T 1fxk_C 4 AEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQGKDGSETLVPVGAG 59 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEEEEETT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCeEEEEcCCC
Confidence 467888999999999999999999988888888888888887 344556666654
No 6
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=91.25 E-value=0.23 Score=29.74 Aligned_cols=25 Identities=36% Similarity=0.430 Sum_probs=22.2
Q ss_pred hHhHHHHHHHHHHHHHHHHHHhhhc
Q 037836 21 RRELAKVQVLEREISFLEEELKTVD 45 (163)
Q Consensus 21 hR~~Aelq~LeqEI~fLEEEL~~LE 45 (163)
+|+..+-.+|.|||.-||-|+..||
T Consensus 3 rrlkqknarlkqeiaaleyeiaale 27 (28)
T 3ra3_B 3 RRLKQKNARLKQEIAALEYEIAALE 27 (28)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHhc
Confidence 6777888899999999999998887
No 7
>2pbi_A Regulator of G-protein signaling 9; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=90.50 E-value=0.1 Score=46.14 Aligned_cols=45 Identities=18% Similarity=0.259 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCchhhhhHHHHHhhhhcC--CCCcccc
Q 037836 26 KVQVLEREISFLEEELKTVDRFHPASRSCKEVADFVVAKS--DPLIPVN 72 (163)
Q Consensus 26 elq~LeqEI~fLEEEL~~LE~~~paS~~CKEv~~~Ves~p--DPLLP~t 72 (163)
-++.+.+||.+|+-|| ..+.+ ++|.++.+++.++|... ||||.-.
T Consensus 220 ~~~~~r~~veqLk~~l-~~~ri-kvS~~~e~l~~y~e~~~~~DPll~g~ 266 (424)
T 2pbi_A 220 TVTAVRKEIMYYQQAL-MRSTV-KSSVSLGGIVKYSEQFSSNDAIMSGC 266 (424)
T ss_dssp CHHHHHHHHHHHHHHH-HSCCC-CHHHHHHHHHHHHHHHGGGCHHHHCC
T ss_pred cHHHHHHHHHHHHHHh-cccce-eHHHHHHHHHHHHHhhccCCCccccC
Confidence 3567888999999998 45554 69999999999998765 9998544
No 8
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=90.44 E-value=0.14 Score=32.94 Aligned_cols=22 Identities=18% Similarity=0.231 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhcc
Q 037836 25 AKVQVLEREISFLEEELKTVDR 46 (163)
Q Consensus 25 Aelq~LeqEI~fLEEEL~~LE~ 46 (163)
..|+.|+++|..||++|++|+.
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l~~ 65 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRLKA 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3478889999999988888864
No 9
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=89.93 E-value=0.29 Score=35.70 Aligned_cols=35 Identities=17% Similarity=0.069 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcccCchhhhhHHH
Q 037836 23 ELAKVQVLEREISFLEEELKTVDRFHPASRSCKEV 57 (163)
Q Consensus 23 ~~Aelq~LeqEI~fLEEEL~~LE~~~paS~~CKEv 57 (163)
++++++.|++||..|+|||+.|.+..-.-.-.-|+
T Consensus 12 l~~~~~~l~~~i~~lkeel~~L~~~P~~Vg~v~e~ 46 (109)
T 2wg5_A 12 LEDKVEELLSKNYHLENEVARLRSPPLLVGVVSDI 46 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEE
Confidence 67899999999999999999999876543333333
No 10
>1pwb_A SP-D, PSP-D, pulmonary surfactant-associated protein D; collectin, C-type lectin, alpha-helical coiled coil, carbohydrate recognition domain; HET: GLC; 1.40A {Homo sapiens} SCOP: d.169.1.1 h.1.1.1 PDB: 1pw9_A* 3ikn_A* 3ikp_A* 3ikq_A* 3ikr_A* 2rie_A* 2ggx_A* 2ggu_A* 2ork_A* 2orj_A* 2ria_A* 2rib_A* 2ric_A* 2rid_A* 2os9_A* 3dbz_A 3g81_A* 3g83_A* 1b08_A 3g84_A* ...
Probab=87.59 E-value=0.39 Score=35.32 Aligned_cols=20 Identities=15% Similarity=0.413 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHhhhcc
Q 037836 27 VQVLEREISFLEEELKTVDR 46 (163)
Q Consensus 27 lq~LeqEI~fLEEEL~~LE~ 46 (163)
|+.|+++|+.|+++|.+|++
T Consensus 33 l~~L~~~l~~Lq~~l~~l~~ 52 (177)
T 1pwb_A 33 VEALQGQVQHLQAAFSQYKK 52 (177)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 66777888888888877654
No 11
>1buu_A Protein (mannose-binding protein A); lectin, HOST defense, metalloprotein, sugar binding protein; 1.90A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1
Probab=86.58 E-value=0.44 Score=34.93 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=20.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhhcc
Q 037836 22 RELAKVQVLEREISFLEEELKTVDR 46 (163)
Q Consensus 22 R~~Aelq~LeqEI~fLEEEL~~LE~ 46 (163)
=+..+|+.|+++|+.|+.+|.+|++
T Consensus 20 ~~~~~l~~L~~~~~~L~~~l~~l~~ 44 (168)
T 1buu_A 20 AIEVKLANMEAEINTLKSKLELTNK 44 (168)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555688999999999999988765
No 12
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=85.46 E-value=1 Score=29.55 Aligned_cols=28 Identities=29% Similarity=0.385 Sum_probs=23.3
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHHHhhhc
Q 037836 18 YGKRRELAKVQVLEREISFLEEELKTVD 45 (163)
Q Consensus 18 ~GKhR~~Aelq~LeqEI~fLEEEL~~LE 45 (163)
+.+.|.++-|+.||.++..|++|-.+|.
T Consensus 15 rSR~RKk~~~~~LE~~v~~L~~eN~~L~ 42 (55)
T 1dh3_A 15 ESRRKKKEYVKSLENRVAVLENQNKTLI 42 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888999999999999998877764
No 13
>1uk5_A BAG-family molecular chaperone regulator-3; triple helix bandle, CAIR-1, BIS, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.7.7.1
Probab=85.10 E-value=1.6 Score=32.88 Aligned_cols=47 Identities=19% Similarity=0.256 Sum_probs=31.4
Q ss_pred CCCCCCCCCC-CCCCCchhhhHhHHHHHHHHHHHHHHHHHHhhhcccC
Q 037836 2 SLPPPCPKSP-PEYPDLYGKRRELAKVQVLEREISFLEEELKTVDRFH 48 (163)
Q Consensus 2 ~l~~p~PKsP-P~~pD~~GKhR~~Aelq~LeqEI~fLEEEL~~LE~~~ 48 (163)
+.++++|..| |...|.--+|....+|+.+..|+.-|+++.+++.|..
T Consensus 6 ~~~~~e~~~~~~~~~~~~~~~p~~~~I~~I~~eV~~L~~qV~~f~g~k 53 (111)
T 1uk5_A 6 SGAPAEPAAPKSGEAETPPKHPGVLKVEAILEKVQGLEQAVDSFEGKK 53 (111)
T ss_dssp CCCCCCCCCCCCCSSSSCCCCHHHHHHHHHHHHHHHHHHHHHTCCSCS
T ss_pred CCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 3344444444 4445777778877888888888888888877776643
No 14
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=84.85 E-value=0.99 Score=29.33 Aligned_cols=27 Identities=19% Similarity=0.295 Sum_probs=21.7
Q ss_pred hHhHHHHHHHHHHHHHHHHHHhhhccc
Q 037836 21 RRELAKVQVLEREISFLEEELKTVDRF 47 (163)
Q Consensus 21 hR~~Aelq~LeqEI~fLEEEL~~LE~~ 47 (163)
.|+-+||++.|++|.-||.-|++||..
T Consensus 12 ~kVdrEI~Kte~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 12 DRVDREITMVEQQISKLKKKQQQLEEE 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467788888888888888888888753
No 15
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=84.66 E-value=0.93 Score=28.27 Aligned_cols=23 Identities=17% Similarity=0.443 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhc
Q 037836 23 ELAKVQVLEREISFLEEELKTVD 45 (163)
Q Consensus 23 ~~Aelq~LeqEI~fLEEEL~~LE 45 (163)
-|++|..|.++...||+++..||
T Consensus 12 ~qqDIddlkrQN~~Le~Qir~le 34 (34)
T 1a93_B 12 HQQDIDDLKRQNALLEQQVRALX 34 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hHhhHHHHHHHHHHHHHHHHhcC
Confidence 46789999999999999999887
No 16
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=84.65 E-value=0.95 Score=30.93 Aligned_cols=21 Identities=19% Similarity=0.498 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhc
Q 037836 25 AKVQVLEREISFLEEELKTVD 45 (163)
Q Consensus 25 Aelq~LeqEI~fLEEEL~~LE 45 (163)
+++..|.+|+..|+.+|..|+
T Consensus 61 ~e~~~L~~~~~~L~~~l~~L~ 81 (83)
T 1nkp_B 61 QDIDDLKRQNALLEQQVRALG 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 344444444444444444443
No 17
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=84.63 E-value=0.93 Score=31.57 Aligned_cols=25 Identities=16% Similarity=0.251 Sum_probs=19.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhhcc
Q 037836 22 RELAKVQVLEREISFLEEELKTVDR 46 (163)
Q Consensus 22 R~~Aelq~LeqEI~fLEEEL~~LE~ 46 (163)
+.|-||..|+++|.-||+++..|+.
T Consensus 19 keqrEle~le~~Ie~LE~~i~~le~ 43 (89)
T 2lw1_A 19 KLQRELEQLPQLLEDLEAKLEALQT 43 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567788888888888888888764
No 18
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=84.02 E-value=0.62 Score=34.01 Aligned_cols=36 Identities=11% Similarity=0.205 Sum_probs=30.2
Q ss_pred CCchhhhHhHHHHHHHHHHHHHHHHHHhhhcccCch
Q 037836 15 PDLYGKRRELAKVQVLEREISFLEEELKTVDRFHPA 50 (163)
Q Consensus 15 pD~~GKhR~~Aelq~LeqEI~fLEEEL~~LE~~~pa 50 (163)
|--.-|.+++++|+.|++||.-...+-+.|++|..|
T Consensus 12 PpeqRkkkL~~Ki~el~~ei~ke~~~regl~Km~~v 47 (98)
T 2ke4_A 12 PPEQQRKRLQQQLEERSRELQKEVDQREALKKMKDV 47 (98)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334568899999999999999999888888888666
No 19
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=83.92 E-value=0.13 Score=34.70 Aligned_cols=27 Identities=11% Similarity=0.138 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcccCc
Q 037836 23 ELAKVQVLEREISFLEEELKTVDRFHP 49 (163)
Q Consensus 23 ~~Aelq~LeqEI~fLEEEL~~LE~~~p 49 (163)
..++|++|++|+..|+.|++.|.+..+
T Consensus 64 ~~~ei~~L~~e~~~L~~e~~~Lkk~~~ 90 (97)
T 2jn6_A 64 EAEQIRQLKKENALQRARTRHPAESCL 90 (97)
T ss_dssp THHHHHHHHHCGGGGGGTTSCCCGGGG
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999988888776543
No 20
>2rjz_A PILO protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Pseudomonas aeruginosa}
Probab=83.20 E-value=0.69 Score=34.97 Aligned_cols=46 Identities=13% Similarity=0.198 Sum_probs=37.8
Q ss_pred CchhhhHhHHHHHHHHHHHHHHHHHHhhhcccCchhhhhHHHHHhh
Q 037836 16 DLYGKRRELAKVQVLEREISFLEEELKTVDRFHPASRSCKEVADFV 61 (163)
Q Consensus 16 D~~GKhR~~Aelq~LeqEI~fLEEEL~~LE~~~paS~~CKEv~~~V 61 (163)
++.-|.++.|+|.+|++|+..||++|+++...=|..+-=-+|++.|
T Consensus 6 ~~~~k~~~aa~L~~l~~ql~~l~~~l~~l~~~LP~~~em~~LL~~i 51 (147)
T 2rjz_A 6 QFSTKAFQAANLEAYKAQMKEMEESFGALLRQLPSDTEVPGLLEDI 51 (147)
T ss_dssp HHHHTGGGCSSHHHHHHHHHHHHHHHHHHHHTTTGGGHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 3566889999999999999999999999998887776555566555
No 21
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=82.69 E-value=1 Score=38.12 Aligned_cols=25 Identities=12% Similarity=0.296 Sum_probs=20.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhhcc
Q 037836 22 RELAKVQVLEREISFLEEELKTVDR 46 (163)
Q Consensus 22 R~~Aelq~LeqEI~fLEEEL~~LE~ 46 (163)
|+.++++.|.+||..|++||+.|-.
T Consensus 72 ~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 72 KLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3677889999999999999998854
No 22
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=82.26 E-value=1 Score=31.90 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcc
Q 037836 23 ELAKVQVLEREISFLEEELKTVDR 46 (163)
Q Consensus 23 ~~Aelq~LeqEI~fLEEEL~~LE~ 46 (163)
+..+|+.||++|+-||.+|++|++
T Consensus 2 ~~~~l~~l~~~~~~l~~~l~~l~~ 25 (149)
T 1rtm_1 2 IEVKLANMEAEINTLKSKLELTNK 25 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345688888888888888887765
No 23
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=82.14 E-value=1 Score=33.36 Aligned_cols=33 Identities=24% Similarity=0.347 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHhhhcccCchhhhhHHHHHh
Q 037836 28 QVLEREISFLEEELKTVDRFHPASRSCKEVADF 60 (163)
Q Consensus 28 q~LeqEI~fLEEEL~~LE~~~paS~~CKEv~~~ 60 (163)
+.|+.||.-|+.|+..||+++.-++.-|-=..+
T Consensus 50 ~eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~ 82 (96)
T 1t3j_A 50 KHLEEEIARLSKEIDQLEKMQNNSKLLRNKAVQ 82 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 568899999999999999998877766543333
No 24
>1htn_A Tetranectin; plasminogen binding, kringle 4, alpha-helical coiled coil, C-type lectin, carbohydrate recognition domain; 2.80A {Homo sapiens} SCOP: d.169.1.1 h.1.1.1
Probab=81.57 E-value=0.48 Score=34.99 Aligned_cols=24 Identities=13% Similarity=0.182 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccc
Q 037836 24 LAKVQVLEREISFLEEELKTVDRF 47 (163)
Q Consensus 24 ~Aelq~LeqEI~fLEEEL~~LE~~ 47 (163)
...|+.|+++|..|++||..|..+
T Consensus 21 ~~~~~~L~~~~~~l~~~l~~l~~~ 44 (182)
T 1htn_A 21 TKMFEELKSRLDTLSQEVALLKEQ 44 (182)
T ss_dssp ------CHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455677888888888888877755
No 25
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=80.97 E-value=1.5 Score=28.80 Aligned_cols=25 Identities=16% Similarity=0.266 Sum_probs=19.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhhcc
Q 037836 22 RELAKVQVLEREISFLEEELKTVDR 46 (163)
Q Consensus 22 R~~Aelq~LeqEI~fLEEEL~~LE~ 46 (163)
++..++..|.+|+.-|+++|+.|+.
T Consensus 31 ~v~~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 31 QVRKDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5677888999999999999998874
No 26
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=80.02 E-value=1.9 Score=30.34 Aligned_cols=25 Identities=12% Similarity=0.287 Sum_probs=17.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhhcc
Q 037836 22 RELAKVQVLEREISFLEEELKTVDR 46 (163)
Q Consensus 22 R~~Aelq~LeqEI~fLEEEL~~LE~ 46 (163)
++++++.+|.+|...|+.+|++|+|
T Consensus 63 ~l~~~~~~L~~~n~~L~~rl~~L~~ 87 (88)
T 1nkp_A 63 KLISEEDLLRKRREQLKHKLEQLGG 87 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4555666777777778888877765
No 27
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=78.93 E-value=1.4 Score=28.82 Aligned_cols=20 Identities=25% Similarity=0.408 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 037836 25 AKVQVLEREISFLEEELKTV 44 (163)
Q Consensus 25 Aelq~LeqEI~fLEEEL~~L 44 (163)
.+|+.|++.|..||+.|++|
T Consensus 58 ~~~~~L~~ri~~LE~~l~~l 77 (81)
T 1hwt_C 58 NELKKLRERVKSLEKTLSKV 77 (81)
T ss_dssp HHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 55666677776666666555
No 28
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=78.88 E-value=1.6 Score=31.10 Aligned_cols=25 Identities=24% Similarity=0.461 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccCc
Q 037836 25 AKVQVLEREISFLEEELKTVDRFHP 49 (163)
Q Consensus 25 Aelq~LeqEI~fLEEEL~~LE~~~p 49 (163)
|...+|.++|++|++||..||.-+.
T Consensus 43 atnarL~eq~~lLK~EIRRlERnqe 67 (71)
T 3bbp_D 43 ATNAILMEQIKLLKSEIRRLERNQE 67 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred chHHHHHHHHHHHHHHHHHHHhhHh
Confidence 5678999999999999999997653
No 29
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=78.52 E-value=0.62 Score=34.78 Aligned_cols=54 Identities=19% Similarity=0.231 Sum_probs=35.0
Q ss_pred hHhHHHHHHHHHHHHHHHHHHhhh---cccCchhhhhHHHHHhhh-hcCCCCcccccC
Q 037836 21 RRELAKVQVLEREISFLEEELKTV---DRFHPASRSCKEVADFVV-AKSDPLIPVNRK 74 (163)
Q Consensus 21 hR~~Aelq~LeqEI~fLEEEL~~L---E~~~paS~~CKEv~~~Ve-s~pDPLLP~t~g 74 (163)
.++++.+++|++|+..|.+.+..| +..-+-..--.|.++.+. ...+=|.|++.+
T Consensus 12 ~ql~~~~qql~~~~~~l~~~~~~L~~a~~~~~e~~~~l~~l~~l~~~~~~ilvplg~~ 69 (151)
T 2zdi_C 12 EKLAYEYQVLQAQAQILAQNLELLNLAKAEVQTVRETLENLKKIEEEKPEILVPIGAG 69 (151)
T ss_dssp HHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSCEEEEECSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEEEEcCCC
Confidence 456778888888888888888888 544444444444444444 344557777653
No 30
>3pbf_A Pulmonary surfactant-associated protein A; collectin, carbohydrate binding, lectin, mannose, sugar BIND protein; 1.80A {Rattus norvegicus} PDB: 1r14_A* 1r13_A* 3paq_A* 3par_A 3pak_A
Probab=78.00 E-value=2.2 Score=29.84 Aligned_cols=27 Identities=7% Similarity=0.014 Sum_probs=22.3
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHhhhccc
Q 037836 20 KRRELAKVQVLEREISFLEEELKTVDRF 47 (163)
Q Consensus 20 KhR~~Aelq~LeqEI~fLEEEL~~LE~~ 47 (163)
+.+++.+|++|+++|..|+++| ++.+.
T Consensus 4 ~e~l~~~~~~l~~~l~~~~~~~-~~~~~ 30 (148)
T 3pbf_A 4 DEELQTELYEIKHQILQTMGVL-SLQGS 30 (148)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH-HHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHhc
Confidence 3578899999999999999999 66544
No 31
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=77.59 E-value=1.9 Score=27.43 Aligned_cols=23 Identities=13% Similarity=-0.009 Sum_probs=20.0
Q ss_pred hHhHHHHHHHHHHHHHHHHHHhh
Q 037836 21 RRELAKVQVLEREISFLEEELKT 43 (163)
Q Consensus 21 hR~~Aelq~LeqEI~fLEEEL~~ 43 (163)
..++.+|+.||++|..|+..|++
T Consensus 47 ~~L~~ri~~Le~~l~~l~~~l~~ 69 (70)
T 1zme_C 47 QQLQKDLNDKTEENNRLKALLLE 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 55888999999999999998875
No 32
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=77.49 E-value=2.2 Score=29.69 Aligned_cols=15 Identities=33% Similarity=0.570 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q 037836 27 VQVLEREISFLEEEL 41 (163)
Q Consensus 27 lq~LeqEI~fLEEEL 41 (163)
+.+|.+|+..|+.+|
T Consensus 63 ~~~L~~e~~~L~~~L 77 (80)
T 1nlw_A 63 IDQLQREQRHLKRQL 77 (80)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 33
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=77.15 E-value=2.1 Score=30.84 Aligned_cols=28 Identities=18% Similarity=0.248 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccCchh
Q 037836 24 LAKVQVLEREISFLEEELKTVDRFHPAS 51 (163)
Q Consensus 24 ~Aelq~LeqEI~fLEEEL~~LE~~~paS 51 (163)
.+..++|++|++-|.+|++.||+.+...
T Consensus 110 ~~~~~~l~~~~~~l~~~l~~le~~~~~~ 137 (139)
T 3eff_K 110 KAAEEAYTRTTRALHERFDRLERMLDDN 137 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456788899999999999999876554
No 34
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=77.11 E-value=2.5 Score=30.67 Aligned_cols=27 Identities=26% Similarity=0.303 Sum_probs=22.7
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHhhhcc
Q 037836 20 KRRELAKVQVLEREISFLEEELKTVDR 46 (163)
Q Consensus 20 KhR~~Aelq~LeqEI~fLEEEL~~LE~ 46 (163)
+-+++++|+.|+.++.-|+.||.+++.
T Consensus 3 ~~~L~~~i~~L~~q~~~L~~ei~~~~a 29 (85)
T 3viq_B 3 KSQLESRVHLLEQQKEQLESSLQDALA 29 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457889999999999999999988863
No 35
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=76.59 E-value=2.2 Score=28.39 Aligned_cols=27 Identities=15% Similarity=0.319 Sum_probs=23.9
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHhhhcc
Q 037836 20 KRRELAKVQVLEREISFLEEELKTVDR 46 (163)
Q Consensus 20 KhR~~Aelq~LeqEI~fLEEEL~~LE~ 46 (163)
+.|..-||..|++-++-|++|++.+++
T Consensus 23 ~~~r~DEV~~Le~NLrEL~~ei~~~~~ 49 (51)
T 1yzm_A 23 AAGRMDEVRTLQENLRQLQDEYDQQQT 49 (51)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhCCcHHHHHHHHHHHHHHHHHHHHhc
Confidence 567788999999999999999999874
No 36
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=75.97 E-value=3.1 Score=32.44 Aligned_cols=47 Identities=15% Similarity=0.203 Sum_probs=32.0
Q ss_pred hHhHHHHHHHHHHHHHHHHHHhhh-cccCchhhhhHHHHHhhhhcCCC
Q 037836 21 RRELAKVQVLEREISFLEEELKTV-DRFHPASRSCKEVADFVVAKSDP 67 (163)
Q Consensus 21 hR~~Aelq~LeqEI~fLEEEL~~L-E~~~paS~~CKEv~~~Ves~pDP 67 (163)
..++|+|+.+.+++.-|+.||++| +|.+....+-.|-..+-+.+.||
T Consensus 62 k~Lhaev~~v~~~F~~Ld~~L~~l~~~s~e~~~i~~EY~r~k~~K~dp 109 (140)
T 1xaw_A 62 KSLQSVLDEINKELSRLDKELDDYREESEEYMAAADEYNRLKQVKGSA 109 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHTSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcCCc
Confidence 468899999999999999999985 34444444545555443344554
No 37
>1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1
Probab=75.83 E-value=1 Score=35.85 Aligned_cols=35 Identities=23% Similarity=0.202 Sum_probs=28.8
Q ss_pred HHHHHHhhhcccCchhhhhHHHHHhhhhcCCCCcc
Q 037836 36 FLEEELKTVDRFHPASRSCKEVADFVVAKSDPLIP 70 (163)
Q Consensus 36 fLEEEL~~LE~~~paS~~CKEv~~~Ves~pDPLLP 70 (163)
.|+|.|++||.+.+.+.--+++++|+++..-.++.
T Consensus 223 ~l~~~~~~~~~~~~~~~~~~~~~~f~~~~~r~~~~ 257 (270)
T 1j2z_A 223 SLRESAKLELEEHANNPFVKEICSFILESSRGVAY 257 (270)
T ss_dssp CHHHHHHHHHHHTSSCHHHHHHHHHHHHCSSCBCC
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHhccCCccC
Confidence 36999999998887788889999999987666655
No 38
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=75.26 E-value=2.5 Score=29.71 Aligned_cols=27 Identities=15% Similarity=0.319 Sum_probs=23.6
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHhhhcc
Q 037836 20 KRRELAKVQVLEREISFLEEELKTVDR 46 (163)
Q Consensus 20 KhR~~Aelq~LeqEI~fLEEEL~~LE~ 46 (163)
+.|..-||..|++-++-|++|++.++.
T Consensus 41 ~~~r~DEV~tLe~NLrEL~~ei~~~q~ 67 (69)
T 1z0k_B 41 AAGRMDEVRTLQENLRQLQDEYDQQQT 67 (69)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHHHhc
Confidence 567778999999999999999999874
No 39
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=75.07 E-value=2.8 Score=30.81 Aligned_cols=22 Identities=36% Similarity=0.424 Sum_probs=14.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHhh
Q 037836 22 RELAKVQVLEREISFLEEELKT 43 (163)
Q Consensus 22 R~~Aelq~LeqEI~fLEEEL~~ 43 (163)
++..++++|.++|..||+||+.
T Consensus 93 ~e~~~~~~L~~~i~~Le~el~~ 114 (117)
T 3kin_B 93 KEKEKNKALKSVIQHLEVELNR 114 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777777777764
No 40
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=75.00 E-value=2.9 Score=27.40 Aligned_cols=23 Identities=22% Similarity=0.427 Sum_probs=10.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhh
Q 037836 22 RELAKVQVLEREISFLEEELKTV 44 (163)
Q Consensus 22 R~~Aelq~LeqEI~fLEEEL~~L 44 (163)
|....++.||.++..|+.|-.+|
T Consensus 19 rKk~~~~~Le~~v~~L~~~n~~L 41 (62)
T 1jnm_A 19 RKLERIARLEEKVKTLKAQNSEL 41 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555555555555444443
No 41
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=74.16 E-value=1.1 Score=37.69 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccC
Q 037836 25 AKVQVLEREISFLEEELKTVDRFH 48 (163)
Q Consensus 25 Aelq~LeqEI~fLEEEL~~LE~~~ 48 (163)
++++.|++|++-|++|+++||+.-
T Consensus 185 ~eie~L~~~~~~L~eEi~~Le~~~ 208 (315)
T 2ve7_A 185 FKLESLEAKNRALNEQIARLEQER 208 (315)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888888888888888887653
No 42
>2yf2_A C4B binding protein; immune system, complement system; 2.24A {Gallus gallus}
Probab=73.90 E-value=2.9 Score=29.02 Aligned_cols=25 Identities=28% Similarity=0.315 Sum_probs=20.9
Q ss_pred hHhHHHHHHHHHHHHHHHHHHhhhc
Q 037836 21 RRELAKVQVLEREISFLEEELKTVD 45 (163)
Q Consensus 21 hR~~Aelq~LeqEI~fLEEEL~~LE 45 (163)
-|-+.||++|=-||+-||.||..|-
T Consensus 30 ~rTLLEi~KL~LEIQKL~~EL~gls 54 (65)
T 2yf2_A 30 VKTLLEIRKLFLEIQKLKVELQGLS 54 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcchh
Confidence 4677889999999999999988764
No 43
>2lw9_A Unconventionnal myosin-X; MYO10 anti-CC, motor protein; NMR {Homo sapiens}
Probab=73.82 E-value=3.5 Score=27.70 Aligned_cols=21 Identities=24% Similarity=0.378 Sum_probs=17.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHh
Q 037836 22 RELAKVQVLEREISFLEEELK 42 (163)
Q Consensus 22 R~~Aelq~LeqEI~fLEEEL~ 42 (163)
|.+.||-+||+||.-||.--+
T Consensus 3 rQ~EEILRLErEIE~Lqrqke 23 (51)
T 2lw9_A 3 KQVEEILRLEKEIEDLQRMKE 23 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999985443
No 44
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=73.07 E-value=2.7 Score=27.39 Aligned_cols=24 Identities=21% Similarity=0.131 Sum_probs=12.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhhc
Q 037836 22 RELAKVQVLEREISFLEEELKTVD 45 (163)
Q Consensus 22 R~~Aelq~LeqEI~fLEEEL~~LE 45 (163)
|..+.++.||+++..|++|-.+|.
T Consensus 19 rKk~~~~~Le~~~~~L~~~n~~L~ 42 (61)
T 1t2k_D 19 KRKVWVQSLEKKAEDLSSLNGQLQ 42 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555554443
No 45
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=73.00 E-value=2.7 Score=27.51 Aligned_cols=18 Identities=33% Similarity=0.427 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 037836 26 KVQVLEREISFLEEELKT 43 (163)
Q Consensus 26 elq~LeqEI~fLEEEL~~ 43 (163)
.|++||++|.-||+||..
T Consensus 13 sV~KLek~ID~LEdeL~~ 30 (52)
T 2z5i_A 13 EVARLKKLVDDLEDELYA 30 (52)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 488999999999998863
No 46
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=72.73 E-value=4.1 Score=27.25 Aligned_cols=27 Identities=19% Similarity=0.322 Sum_probs=21.0
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHhhhcc
Q 037836 20 KRRELAKVQVLEREISFLEEELKTVDR 46 (163)
Q Consensus 20 KhR~~Aelq~LeqEI~fLEEEL~~LE~ 46 (163)
+.|.++.++.||.++..|+.|-.+|+.
T Consensus 25 R~RK~~~~~~Le~~v~~L~~eN~~L~~ 51 (63)
T 2dgc_A 25 RARKLQRMKQLEDKVEELLSKNYHLEN 51 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788888888888888777764
No 47
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=72.44 E-value=2.9 Score=34.11 Aligned_cols=33 Identities=18% Similarity=0.270 Sum_probs=16.4
Q ss_pred CCCCCchhhhHhHHHHHHHHHHHHHHHHHHhhh
Q 037836 12 PEYPDLYGKRRELAKVQVLEREISFLEEELKTV 44 (163)
Q Consensus 12 P~~pD~~GKhR~~Aelq~LeqEI~fLEEEL~~L 44 (163)
..+|+..|.|.....++.|+++|.-|++||+++
T Consensus 213 ~~~p~~~~~~~p~~~l~~l~~~i~~l~~~l~~~ 245 (357)
T 3rrk_A 213 LRFPGAYGAMPLGKAAARMKERARLAPEELVGI 245 (357)
T ss_dssp CCCCGGGGGSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCcccCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666673333344444555555544444444
No 48
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=72.03 E-value=3.8 Score=34.10 Aligned_cols=45 Identities=16% Similarity=0.162 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccCchhhhhHHHHHhh-hhcCCCC
Q 037836 24 LAKVQVLEREISFLEEELKTVDRFHPASRSCKEVADFV-VAKSDPL 68 (163)
Q Consensus 24 ~Aelq~LeqEI~fLEEEL~~LE~~~paS~~CKEv~~~V-es~pDPL 68 (163)
+.+|..|+.||.-|++|+++|-.+-.....-.+|++-+ +..+|-|
T Consensus 121 h~~ie~l~eEi~~LkeEn~eLkeLae~~q~la~vi~~l~~~~~~~~ 166 (209)
T 2wvr_A 121 HKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIERLNGEPLDNF 166 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 34566666777777777777777777777666766544 3344443
No 49
>2ovc_A Potassium voltage-gated channel subfamily KQT MEM; potassium channel, ION channel assemb coiled-coil, tetramer, transport protein; 2.07A {Homo sapiens}
Probab=72.02 E-value=5.5 Score=24.44 Aligned_cols=30 Identities=17% Similarity=0.303 Sum_probs=25.2
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHHHhhhccc
Q 037836 18 YGKRRELAKVQVLEREISFLEEELKTVDRF 47 (163)
Q Consensus 18 ~GKhR~~Aelq~LeqEI~fLEEEL~~LE~~ 47 (163)
.|+--+.+.|.++|+|+..++.-|++|=++
T Consensus 3 ~~~~Sm~~Rl~kVE~qv~~md~KLd~l~~~ 32 (33)
T 2ovc_A 3 VDEISMMGRVVKVEKQVQSIEHKLDLLLGF 32 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466778999999999999999999988543
No 50
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=71.77 E-value=4.1 Score=27.67 Aligned_cols=22 Identities=14% Similarity=0.161 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc
Q 037836 24 LAKVQVLEREISFLEEELKTVD 45 (163)
Q Consensus 24 ~Aelq~LeqEI~fLEEEL~~LE 45 (163)
+.++++|++|+..|++|.+.|+
T Consensus 53 ~~~~~~l~~e~~~L~~~~~~L~ 74 (83)
T 1nkp_B 53 RRKNHTHQQDIDDLKRQNALLE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444443
No 51
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=71.41 E-value=4.7 Score=26.55 Aligned_cols=23 Identities=13% Similarity=0.299 Sum_probs=15.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhh
Q 037836 22 RELAKVQVLEREISFLEEELKTV 44 (163)
Q Consensus 22 R~~Aelq~LeqEI~fLEEEL~~L 44 (163)
|+.+.|+.--+||.-|.|||+.|
T Consensus 27 rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 27 KLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555666677777777777765
No 52
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil, signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP: a.2.6.1
Probab=71.09 E-value=3.9 Score=29.58 Aligned_cols=27 Identities=11% Similarity=0.142 Sum_probs=23.4
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHhhhcc
Q 037836 20 KRRELAKVQVLEREISFLEEELKTVDR 46 (163)
Q Consensus 20 KhR~~Aelq~LeqEI~fLEEEL~~LE~ 46 (163)
+-+..++|...++.|..|++||++|+.
T Consensus 58 ~~~V~~eL~~sn~kl~~L~~eL~eL~a 84 (86)
T 1cxz_B 58 LGPVELLLRGSSRRLDLLHQQLQELHA 84 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 446778899999999999999999985
No 53
>3qx3_A DNA topoisomerase 2-beta; toprim domain, winged-helix domain, coiled-coil domain, DNA and cleavage, nucleus; HET: DNA EVP; 2.16A {Homo sapiens} PDB: 4fm9_A*
Probab=70.78 E-value=4.8 Score=38.92 Aligned_cols=40 Identities=23% Similarity=0.253 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccCchhhhhHHHHHhhhh
Q 037836 24 LAKVQVLEREISFLEEELKTVDRFHPASRSCKEVADFVVA 63 (163)
Q Consensus 24 ~Aelq~LeqEI~fLEEEL~~LE~~~paS~~CKEv~~~Ves 63 (163)
..++++|.+|+..+++||+.|+++.+..-=-+||.+|++.
T Consensus 733 ~E~~~kL~~q~~~k~~El~~L~~~t~~dlW~~DLd~f~~~ 772 (803)
T 3qx3_A 733 KEKVEELIKQRDAKGREVNDLKRKSPSDLWKEDLAAFVEE 772 (803)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999988999888754
No 54
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=70.38 E-value=4.2 Score=27.05 Aligned_cols=21 Identities=19% Similarity=0.309 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhc
Q 037836 25 AKVQVLEREISFLEEELKTVD 45 (163)
Q Consensus 25 Aelq~LeqEI~fLEEEL~~LE 45 (163)
.+++.|+++..-|+++++.|+
T Consensus 30 ~~~~~L~~~N~~L~~~i~~L~ 50 (63)
T 1ci6_A 30 GECKELEKKNEALKERADSLA 50 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444
No 55
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=70.09 E-value=3.6 Score=27.06 Aligned_cols=23 Identities=17% Similarity=0.131 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcc
Q 037836 24 LAKVQVLEREISFLEEELKTVDR 46 (163)
Q Consensus 24 ~Aelq~LeqEI~fLEEEL~~LE~ 46 (163)
...++.|+++|..||+.|++|-.
T Consensus 44 ~~~~~~L~~r~~~le~~l~~l~~ 66 (89)
T 3coq_A 44 RAHLTEVESRLERLEQLFLLIFP 66 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC
Confidence 35688999999999999988854
No 56
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=69.92 E-value=5.1 Score=26.68 Aligned_cols=23 Identities=13% Similarity=0.190 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcc
Q 037836 24 LAKVQVLEREISFLEEELKTVDR 46 (163)
Q Consensus 24 ~Aelq~LeqEI~fLEEEL~~LE~ 46 (163)
..||..|.+.|..|+-||++|-|
T Consensus 55 k~Ei~elrr~iq~L~~el~slk~ 77 (77)
T 3trt_A 55 KQESTEYRRQVQSLTMEVDALKG 77 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhhcC
Confidence 45788899999999999988754
No 57
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=69.52 E-value=3.9 Score=27.02 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=14.0
Q ss_pred hHhHHHHHHHHHHHHHHHHHHhhhc
Q 037836 21 RRELAKVQVLEREISFLEEELKTVD 45 (163)
Q Consensus 21 hR~~Aelq~LeqEI~fLEEEL~~LE 45 (163)
.|.++.++.|++++..|++|-..|.
T Consensus 19 ~rKk~~~~~Le~~v~~L~~~n~~L~ 43 (63)
T 2wt7_A 19 NRRRELTDTLQAETDQLEDEKSALQ 43 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444446666666666666555444
No 58
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=68.92 E-value=0.28 Score=40.09 Aligned_cols=44 Identities=16% Similarity=0.170 Sum_probs=25.6
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHhhhcccCchhhhhHHHHHhhhh
Q 037836 20 KRRELAKVQVLEREISFLEEELKTVDRFHPASRSCKEVADFVVA 63 (163)
Q Consensus 20 KhR~~Aelq~LeqEI~fLEEEL~~LE~~~paS~~CKEv~~~Ves 63 (163)
..++++|.++|.+|+..|++++.+++.+..--.-.++++.+.+.
T Consensus 21 ~~~l~~eN~~Lk~e~~~l~~~~~~~~~l~~En~rLr~lL~~~~~ 64 (255)
T 2j5u_A 21 LKNTYTENQHLKERLEELAQLESEVADLKKENKDLKESLDITDS 64 (255)
T ss_dssp -----CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 34455566677777777776666666665555556777776654
No 59
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=68.56 E-value=4.6 Score=28.97 Aligned_cols=13 Identities=15% Similarity=0.439 Sum_probs=2.2
Q ss_pred HhhhhcCCCCccc
Q 037836 59 DFVVAKSDPLIPV 71 (163)
Q Consensus 59 ~~Ves~pDPLLP~ 71 (163)
..+...|++++..
T Consensus 71 ~ll~~~p~~~~~~ 83 (87)
T 1hjb_A 71 NLFKQLPEPLLAS 83 (87)
T ss_dssp HHHHC--------
T ss_pred HHHHHCcHHHhcc
Confidence 3344567766643
No 60
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=68.53 E-value=4.4 Score=26.92 Aligned_cols=26 Identities=19% Similarity=0.290 Sum_probs=14.9
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHhhhc
Q 037836 20 KRRELAKVQVLEREISFLEEELKTVD 45 (163)
Q Consensus 20 KhR~~Aelq~LeqEI~fLEEEL~~LE 45 (163)
+.|..++++.|++++..|++|-.+|+
T Consensus 18 R~KKk~~~~~le~~~~~L~~~N~~L~ 43 (63)
T 1ci6_A 18 RQKKRAEQEALTGECKELEKKNEALK 43 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666666666655554
No 61
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=68.48 E-value=4.8 Score=24.75 Aligned_cols=19 Identities=26% Similarity=0.564 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 037836 26 KVQVLEREISFLEEELKTV 44 (163)
Q Consensus 26 elq~LeqEI~fLEEEL~~L 44 (163)
||..|.|||.-|+.|+..|
T Consensus 3 eiaalkqeiaalkkeiaal 21 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAAL 21 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 5666777777777776544
No 62
>4fz4_A 0197-18KD, uncharacterized protein conserved in bacteria; surface antigen, immune system; 2.44A {Streptococcus suis}
Probab=68.39 E-value=4.5 Score=32.28 Aligned_cols=51 Identities=24% Similarity=0.341 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcccCch----------------hhhhHHHHHhhhh--cCCCCccccc
Q 037836 23 ELAKVQVLEREISFLEEELKTVDRFHPA----------------SRSCKEVADFVVA--KSDPLIPVNR 73 (163)
Q Consensus 23 ~~Aelq~LeqEI~fLEEEL~~LE~~~pa----------------S~~CKEv~~~Ves--~pDPLLP~t~ 73 (163)
.+|+|++|+.=+..||.||++||++..- ++.=++.++.|.+ ..|++++.+.
T Consensus 2 ~~~~l~~~q~l~kele~eL~eLek~p~y~~~s~Y~~Qk~lWee~~~i~~~~m~~~~~lk~d~~~~kk~~ 70 (154)
T 4fz4_A 2 AMAKVEEVQKVVKELEKELGELDKVPSYGDAQDYSYQKALWEEFLRIGKDNMDYASKMKADDKFFHKVK 70 (154)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTSCCCCSCGGGHHHHHHHHHHHHHHHHHHHHTTSCCTTCTTHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhcccccCCcchhhHHHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHHH
Confidence 3688999999999999999999998763 4455566665543 2455555554
No 63
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=67.96 E-value=3.1 Score=28.90 Aligned_cols=19 Identities=42% Similarity=0.639 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 037836 26 KVQVLEREISFLEEELKTV 44 (163)
Q Consensus 26 elq~LeqEI~fLEEEL~~L 44 (163)
||+.+|.|+.-||||++.|
T Consensus 49 evkkveeevkkleeeikkl 67 (67)
T 1lq7_A 49 EVKKVEEEVKKLEEEIKKL 67 (67)
T ss_dssp THHHHHHHHHHHHHHHHHC
T ss_pred chhHHHHHHHHHHHHHhcC
Confidence 5778888999999998764
No 64
>1j8b_A YBAB; hypothetical protein, structural genomics, structure function project, S2F, unknown function; HET: MSE; 1.75A {Haemophilus influenzae RD} SCOP: d.222.1.1 PDB: 1pug_A
Probab=67.94 E-value=4.1 Score=29.91 Aligned_cols=30 Identities=10% Similarity=0.218 Sum_probs=25.0
Q ss_pred hHhHHHHHHHHHHHHHHHHHHhhhcccCch
Q 037836 21 RRELAKVQVLEREISFLEEELKTVDRFHPA 50 (163)
Q Consensus 21 hR~~Aelq~LeqEI~fLEEEL~~LE~~~pa 50 (163)
..++.++|++++++.-+||||+++|-...|
T Consensus 11 ~~mmkqaq~mQ~~m~~~QeeL~~~~v~g~s 40 (112)
T 1j8b_A 11 GGLMKQAQQMQEKMQKMQEEIAQLEVTGES 40 (112)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccEEEEEE
Confidence 357888999999999999999998755443
No 65
>1ybx_A Conserved hypothetical protein; ST genomics, PSI, protein structure initiative, southeast COLL for structural genomics, secsg; HET: MSE; 1.80A {Clostridium thermocellum}
Probab=67.73 E-value=4.2 Score=31.54 Aligned_cols=31 Identities=23% Similarity=0.252 Sum_probs=25.7
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHhhhcccCch
Q 037836 20 KRRELAKVQVLEREISFLEEELKTVDRFHPA 50 (163)
Q Consensus 20 KhR~~Aelq~LeqEI~fLEEEL~~LE~~~pa 50 (163)
-..++.++|++++++.-+||||+++|-...|
T Consensus 43 m~~mmkQAQkmQ~km~k~QeeL~~~eveg~s 73 (143)
T 1ybx_A 43 INNLVKQAQKMQRDMERVQEELKEKTVEASA 73 (143)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCEEEEEE
Confidence 3568889999999999999999998755443
No 66
>3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} SCOP: b.81.1.0
Probab=67.59 E-value=4.2 Score=31.99 Aligned_cols=34 Identities=18% Similarity=0.249 Sum_probs=23.6
Q ss_pred HHHHHHHhhhcccCchhhhhHHHHHhhhhcCCCCc
Q 037836 35 SFLEEELKTVDRFHPASRSCKEVADFVVAKSDPLI 69 (163)
Q Consensus 35 ~fLEEEL~~LE~~~paS~~CKEv~~~Ves~pDPLL 69 (163)
..|+|.|++|+..- .+.--+++++|+++..-.++
T Consensus 225 ~~~~~~~~~~~~~~-~~~~~~~~~~f~~~~~r~~~ 258 (266)
T 3r0s_A 225 GDLKENAKNLLENQ-ESENVKKMCHFILETKRGIP 258 (266)
T ss_dssp SCHHHHHHHHHTTC-CCHHHHHHHHHHHHCSSCCC
T ss_pred CcHHHHHHHHHhhc-CCHHHHHHHHHHHhccCCcC
Confidence 34788888888754 44556899999976544443
No 67
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=67.51 E-value=3.4 Score=29.97 Aligned_cols=26 Identities=23% Similarity=0.460 Sum_probs=15.5
Q ss_pred hHhHHHHHHHHHHHHHHHHHHhhhcc
Q 037836 21 RRELAKVQVLEREISFLEEELKTVDR 46 (163)
Q Consensus 21 hR~~Aelq~LeqEI~fLEEEL~~LE~ 46 (163)
+|.+.++..|+.+|..||.+|+.|+.
T Consensus 12 ~~~~~~~~~l~~~~~~l~~~l~~~~~ 37 (182)
T 3kqg_A 12 KSDLEKASALNTKIRALQGSLENMSK 37 (182)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666665544
No 68
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=67.50 E-value=5.2 Score=24.57 Aligned_cols=26 Identities=23% Similarity=0.266 Sum_probs=19.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhhccc
Q 037836 22 RELAKVQVLEREISFLEEELKTVDRF 47 (163)
Q Consensus 22 R~~Aelq~LeqEI~fLEEEL~~LE~~ 47 (163)
|+..+|..|+.-++.||+.|+.||.+
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~t 28 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEET 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777777777788888777754
No 69
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=67.07 E-value=5.6 Score=29.21 Aligned_cols=18 Identities=33% Similarity=0.632 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHhhhccc
Q 037836 30 LEREISFLEEELKTVDRF 47 (163)
Q Consensus 30 LeqEI~fLEEEL~~LE~~ 47 (163)
||.+|..|+|||..|-++
T Consensus 88 LE~~iesL~eEl~FLKk~ 105 (119)
T 3ol1_A 88 LERKVESLQEEIAFLKKL 105 (119)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555555555544433
No 70
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=67.03 E-value=5.3 Score=26.15 Aligned_cols=23 Identities=13% Similarity=0.082 Sum_probs=12.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhh
Q 037836 22 RELAKVQVLEREISFLEEELKTV 44 (163)
Q Consensus 22 R~~Aelq~LeqEI~fLEEEL~~L 44 (163)
-+++|++.|.+++.-|++++++|
T Consensus 23 aLk~E~~eLk~k~~~L~~~~~el 45 (53)
T 2yy0_A 23 LLRLELAEMKEKYEAIVEENKKL 45 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555554
No 71
>3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently linked comple supercoiling; HET: DNA PTR TSP; 2.48A {Saccharomyces cerevisiae} SCOP: e.11.1.1 PDB: 3l4k_A* 1bjt_A 1bgw_A 2rgr_A*
Probab=67.02 E-value=6.5 Score=37.77 Aligned_cols=40 Identities=18% Similarity=0.161 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccCchhhhhHHHHHhhhh
Q 037836 24 LAKVQVLEREISFLEEELKTVDRFHPASRSCKEVADFVVA 63 (163)
Q Consensus 24 ~Aelq~LeqEI~fLEEEL~~LE~~~paS~~CKEv~~~Ves 63 (163)
.-++++|.+|+..+++||+.|+++.+..-=-+||.+|++.
T Consensus 706 ~E~~~kL~~q~~~k~~El~~L~~~t~~dlW~~DLd~f~~~ 745 (757)
T 3l4j_A 706 KERYQKLLKQKQEKETELENLLKLSAKDIWNTDLKAFEVG 745 (757)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 4679999999999999999999999999999999988753
No 72
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=66.90 E-value=5.9 Score=27.14 Aligned_cols=24 Identities=8% Similarity=0.133 Sum_probs=14.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhhc
Q 037836 22 RELAKVQVLEREISFLEEELKTVD 45 (163)
Q Consensus 22 R~~Aelq~LeqEI~fLEEEL~~LE 45 (163)
+++++++.|.++|+.|+.++++++
T Consensus 12 ~lq~~~~~l~~q~~~l~~~~~e~~ 35 (107)
T 1fxk_A 12 QLQQQAQAISVQKQTVEMQINETQ 35 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666665554
No 73
>2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV, PER-ARNT-SIM, PAS, flavoprotein, protein; HET: FMN; 1.45A {Bacillus subtilis} PDB: 2pr6_A*
Probab=66.70 E-value=2.3 Score=27.63 Aligned_cols=28 Identities=14% Similarity=0.246 Sum_probs=22.2
Q ss_pred chhhhHhHHHHHHHHHHHHHHHHHHhhh
Q 037836 17 LYGKRRELAKVQVLEREISFLEEELKTV 44 (163)
Q Consensus 17 ~~GKhR~~Aelq~LeqEI~fLEEEL~~L 44 (163)
+.|-.|-.-+.+++|+++..++++|+.|
T Consensus 104 ~~~~~~DITe~k~~e~~l~~~~~~l~~l 131 (132)
T 2pr5_A 104 FVGIQNDITKQKEYEKLLEDSLTEITAL 131 (132)
T ss_dssp EEEEEEECHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEEEeCcHHHHHHHHHHHHHHHHHhc
Confidence 3455566678889999999999999876
No 74
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=66.19 E-value=3.4 Score=27.75 Aligned_cols=23 Identities=22% Similarity=0.187 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcc
Q 037836 24 LAKVQVLEREISFLEEELKTVDR 46 (163)
Q Consensus 24 ~Aelq~LeqEI~fLEEEL~~LE~ 46 (163)
...|+.||+.|..||+.|+++..
T Consensus 47 ~~~~~~Le~rl~~le~~l~~~~~ 69 (96)
T 1pyi_A 47 RSYVFFLEDRLAVMMRVLKEYGV 69 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC
Confidence 34688999999999999998864
No 75
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=66.18 E-value=3.4 Score=28.87 Aligned_cols=24 Identities=21% Similarity=0.041 Sum_probs=10.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhhc
Q 037836 22 RELAKVQVLEREISFLEEELKTVD 45 (163)
Q Consensus 22 R~~Aelq~LeqEI~fLEEEL~~LE 45 (163)
+.+.+|.+|+++++.|.+.|++++
T Consensus 39 ~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 39 DARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344455555555555555555544
No 76
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=65.37 E-value=7 Score=26.98 Aligned_cols=24 Identities=21% Similarity=0.338 Sum_probs=14.4
Q ss_pred hHhHHHHHHHHHHHHHHHHHHhhh
Q 037836 21 RRELAKVQVLEREISFLEEELKTV 44 (163)
Q Consensus 21 hR~~Aelq~LeqEI~fLEEEL~~L 44 (163)
.|..+.|+.||++|.-|+++.++|
T Consensus 25 eRK~~~i~~LE~~v~~le~~~~~l 48 (70)
T 1gd2_E 25 KRKEDHLKALETQVVTLKELHSST 48 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666666655543
No 77
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=65.19 E-value=6.6 Score=27.24 Aligned_cols=23 Identities=13% Similarity=0.138 Sum_probs=11.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhh
Q 037836 22 RELAKVQVLEREISFLEEELKTV 44 (163)
Q Consensus 22 R~~Aelq~LeqEI~fLEEEL~~L 44 (163)
+++.+++.|.++|+.|+.+++++
T Consensus 17 ~l~~~~~~l~~q~~~l~~~~~e~ 39 (117)
T 2zqm_A 17 SYQQQLQLVVQQKQKVQLELTEA 39 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555554444444
No 78
>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} SCOP: a.2.1.1 d.26.1.2
Probab=64.85 E-value=6.9 Score=29.67 Aligned_cols=19 Identities=21% Similarity=0.237 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHhhhcccCc
Q 037836 31 EREISFLEEELKTVDRFHP 49 (163)
Q Consensus 31 eqEI~fLEEEL~~LE~~~p 49 (163)
|+.|.+|+++|+..+-+++
T Consensus 59 e~ri~~Le~~L~~a~vid~ 77 (158)
T 1grj_A 59 EGRIKDIEAKLSNAQVIDV 77 (158)
T ss_dssp HHHHHHHHHHHHHEEEECG
T ss_pred HHHHHHHHHHHhhCeecCc
Confidence 3345555555555554443
No 79
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=64.67 E-value=6.6 Score=28.02 Aligned_cols=28 Identities=14% Similarity=0.328 Sum_probs=19.1
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHHHhhhc
Q 037836 18 YGKRRELAKVQVLEREISFLEEELKTVD 45 (163)
Q Consensus 18 ~GKhR~~Aelq~LeqEI~fLEEEL~~LE 45 (163)
-|+.++..-|++|++|-..|+.+++.|.
T Consensus 39 ~G~~KL~~mi~~l~~E~~~l~~ni~~lk 66 (78)
T 3iv1_A 39 KGHQKLEEMVTRLDQEVAEVDKNIELLK 66 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3777777777777777766666665553
No 80
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=64.26 E-value=6.7 Score=26.94 Aligned_cols=19 Identities=16% Similarity=0.242 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHhhhc
Q 037836 27 VQVLEREISFLEEELKTVD 45 (163)
Q Consensus 27 lq~LeqEI~fLEEEL~~LE 45 (163)
|+.|++++..|++|+++|+
T Consensus 52 I~~Lq~~~~~L~~e~~~L~ 70 (82)
T 1am9_A 52 IRFLQHSNQKLKQENLSLR 70 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444
No 81
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=64.24 E-value=7.2 Score=25.52 Aligned_cols=21 Identities=14% Similarity=0.393 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhc
Q 037836 25 AKVQVLEREISFLEEELKTVD 45 (163)
Q Consensus 25 Aelq~LeqEI~fLEEEL~~LE 45 (163)
+++..|.+|...|+.+++.|.
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~ 39 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIV 39 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666654
No 82
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=64.16 E-value=5.3 Score=27.44 Aligned_cols=25 Identities=32% Similarity=0.355 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhccc
Q 037836 23 ELAKVQVLEREISFLEEELKTVDRF 47 (163)
Q Consensus 23 ~~Aelq~LeqEI~fLEEEL~~LE~~ 47 (163)
+.++|++||.+-.+-|.|++.|.++
T Consensus 23 L~~kv~~Le~~c~e~eQEieRL~~L 47 (58)
T 3a2a_A 23 LAAKIQHLEFSCSEKEQEIERLNKL 47 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999888654
No 83
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=63.80 E-value=7.3 Score=28.26 Aligned_cols=24 Identities=21% Similarity=0.272 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccc
Q 037836 24 LAKVQVLEREISFLEEELKTVDRF 47 (163)
Q Consensus 24 ~Aelq~LeqEI~fLEEEL~~LE~~ 47 (163)
+.+|..++.||.-|++|+++|..+
T Consensus 44 h~~ie~~~eEi~~Lk~en~~L~el 67 (83)
T 1wlq_A 44 HKEIEQKDSEIARLRKENKDLAEV 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555556666666666666443
No 84
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=63.75 E-value=6.4 Score=26.06 Aligned_cols=26 Identities=27% Similarity=0.281 Sum_probs=21.5
Q ss_pred hHhHHHHHHHHHHHHHHHHHHhhhcc
Q 037836 21 RRELAKVQVLEREISFLEEELKTVDR 46 (163)
Q Consensus 21 hR~~Aelq~LeqEI~fLEEEL~~LE~ 46 (163)
+++.++|+.||..-+.+|.|++.|.+
T Consensus 14 ~~L~~kv~~Le~~c~~~eQEieRL~~ 39 (48)
T 3vmx_A 14 IQLATKIQHLEFSCSEKEQEIERLNK 39 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 56788899999999999988887754
No 85
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=63.27 E-value=7.9 Score=28.54 Aligned_cols=41 Identities=20% Similarity=0.204 Sum_probs=27.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhhcccCc-hhhhhHHHHHhhh
Q 037836 22 RELAKVQVLEREISFLEEELKTVDRFHP-ASRSCKEVADFVV 62 (163)
Q Consensus 22 R~~Aelq~LeqEI~fLEEEL~~LE~~~p-aS~~CKEv~~~Ve 62 (163)
-|..||++|++||.-||+=...+-.+.. |.--=.||.+|-+
T Consensus 51 eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~L~~eLe~F~~ 92 (96)
T 1t3j_A 51 HLEEEIARLSKEIDQLEKMQNNSKLLRNKAVQLESELENFSK 92 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3567888888888888866555555543 5555566666654
No 86
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=63.10 E-value=6.1 Score=29.24 Aligned_cols=27 Identities=37% Similarity=0.308 Sum_probs=20.0
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHhhhcc
Q 037836 20 KRRELAKVQVLEREISFLEEELKTVDR 46 (163)
Q Consensus 20 KhR~~Aelq~LeqEI~fLEEEL~~LE~ 46 (163)
--.+..+|+.|++|..-|.+|++.||+
T Consensus 14 ~~~lr~ei~~Le~E~~rLr~~~~~LE~ 40 (100)
T 1go4_E 14 ADTLRLKVEELEGERSRLEEEKRMLEA 40 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556788888888888888887774
No 87
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=62.94 E-value=5.2 Score=27.14 Aligned_cols=20 Identities=15% Similarity=0.386 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHhhhcc
Q 037836 27 VQVLEREISFLEEELKTVDR 46 (163)
Q Consensus 27 lq~LeqEI~fLEEEL~~LE~ 46 (163)
|+.|++++..|++|+++|+.
T Consensus 59 I~~L~~~~~~L~~e~~~L~~ 78 (80)
T 1hlo_A 59 IQYMRRKNHTHQQDIDDLKR 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 77888888888888888763
No 88
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=62.86 E-value=2.7 Score=28.98 Aligned_cols=27 Identities=19% Similarity=0.075 Sum_probs=21.5
Q ss_pred hHhHHHHHHHHHHHHHHHHHHhhhccc
Q 037836 21 RRELAKVQVLEREISFLEEELKTVDRF 47 (163)
Q Consensus 21 hR~~Aelq~LeqEI~fLEEEL~~LE~~ 47 (163)
+-++.+++.|++|+..|++++++...+
T Consensus 53 ~~Lq~~~~~L~~e~~~L~~~~~~~~~~ 79 (82)
T 1am9_A 53 RFLQHSNQKLKQENLSLRTAVHKSKSL 79 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 457888999999999999988876543
No 89
>1z0j_B FYVE-finger-containing RAB5 effector protein RABE, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Homo sapiens} SCOP: a.2.19.1
Probab=62.71 E-value=6 Score=27.10 Aligned_cols=27 Identities=22% Similarity=0.288 Sum_probs=23.6
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHhhhcc
Q 037836 20 KRRELAKVQVLEREISFLEEELKTVDR 46 (163)
Q Consensus 20 KhR~~Aelq~LeqEI~fLEEEL~~LE~ 46 (163)
+.|..-||..|++-++-|++|+..+++
T Consensus 30 ~~~R~DEV~~Le~NLrEL~~ei~~~~~ 56 (59)
T 1z0j_B 30 QCGRLDEVEVLTENLRELKHTLAKQKG 56 (59)
T ss_dssp HSSCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HcCChHHHHHHHHHHHHHHHHHHHHhc
Confidence 456678999999999999999999886
No 90
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=62.69 E-value=20 Score=23.95 Aligned_cols=21 Identities=19% Similarity=0.294 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 037836 24 LAKVQVLEREISFLEEELKTV 44 (163)
Q Consensus 24 ~Aelq~LeqEI~fLEEEL~~L 44 (163)
..+++.|+++|..|++-++.|
T Consensus 45 ~~~~~~l~~~i~~L~~~~~~L 65 (99)
T 1q08_A 45 QERLQEVEARIAELQSMQRSL 65 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444443333
No 91
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=62.69 E-value=5.7 Score=31.70 Aligned_cols=29 Identities=17% Similarity=0.214 Sum_probs=22.3
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHHHhhhcc
Q 037836 18 YGKRRELAKVQVLEREISFLEEELKTVDR 46 (163)
Q Consensus 18 ~GKhR~~Aelq~LeqEI~fLEEEL~~LE~ 46 (163)
.|+.++.++++.||+|..-|+.+++.|+.
T Consensus 56 ~g~~~L~~~~~~Le~~~~~L~~~i~~l~~ 84 (174)
T 2p22_A 56 IDKNHLRAVEQAIEQTMHSLNAQIDVLTA 84 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47777888888888888888877777765
No 92
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=62.64 E-value=10 Score=34.23 Aligned_cols=47 Identities=13% Similarity=0.060 Sum_probs=33.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhhcccCchhhhhHHHHHhhhhcCCCCcccccC
Q 037836 22 RELAKVQVLEREISFLEEELKTVDRFHPASRSCKEVADFVVAKSDPLIPVNRK 74 (163)
Q Consensus 22 R~~Aelq~LeqEI~fLEEEL~~LE~~~paS~~CKEv~~~Ves~pDPLLP~t~g 74 (163)
.++++++.|..||.-||++|+++|. --.+++..|-..+||=.|+.+.
T Consensus 75 ~l~~~~~~l~~~i~~le~~~~~~~~------~~~~~l~~iPN~~~~~vP~g~~ 121 (485)
T 3qne_A 75 DLIAEKEKLSNEKKEIIEKEAEADK------NLRSKINQVGNIVHESVVDSQD 121 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHTTSCCCCCTTSCCCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHhCCCCCCccCCCCCC
Confidence 3566677777777777777776653 4467778888888999997654
No 93
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=62.35 E-value=9.4 Score=29.49 Aligned_cols=40 Identities=13% Similarity=0.186 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHhhhc--------ccCchhhhhHHHHHhhhhcCC
Q 037836 27 VQVLEREISFLEEELKTVD--------RFHPASRSCKEVADFVVAKSD 66 (163)
Q Consensus 27 lq~LeqEI~fLEEEL~~LE--------~~~paS~~CKEv~~~Ves~pD 66 (163)
+++|+.=+.|.++.|.+.| ++..++.+.+||.+-|++=||
T Consensus 102 ~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~~hi~sLPD 149 (152)
T 4fla_A 102 ARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELKSHIQSLPD 149 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Confidence 4566666667777765554 456788899999999999988
No 94
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=62.17 E-value=9.4 Score=24.77 Aligned_cols=21 Identities=19% Similarity=0.360 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhc
Q 037836 25 AKVQVLEREISFLEEELKTVD 45 (163)
Q Consensus 25 Aelq~LeqEI~fLEEEL~~LE 45 (163)
.+-..|..||..|++|+.+|.
T Consensus 36 ~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 36 SLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555543
No 95
>2nov_A DNA topoisomerase 4 subunit A; protein, PARC, TOPO IV, GRAM-positive bacteria, quinolone target, DNA binding, DNA cleavage; HET: DNA; 2.67A {Streptococcus pneumoniae} PDB: 3foe_A* 3fof_A* 3k9f_A* 3ksa_A* 3ksb_A* 3ltn_A* 3rad_A* 3rae_A* 3raf_A*
Probab=62.11 E-value=6.5 Score=35.82 Aligned_cols=48 Identities=15% Similarity=0.095 Sum_probs=42.7
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHhhhcccCchhhhhHHHHHhhhhcCCC
Q 037836 20 KRRELAKVQVLEREISFLEEELKTVDRFHPASRSCKEVADFVVAKSDP 67 (163)
Q Consensus 20 KhR~~Aelq~LeqEI~fLEEEL~~LE~~~paS~~CKEv~~~Ves~pDP 67 (163)
.||+..=.+|.+-+++-+|++++-|||+-.|-..-.||++.|.+..|+
T Consensus 351 ~~R~~v~~rR~~~~L~k~~~r~hilegl~~a~~~id~vI~iIr~s~~~ 398 (496)
T 2nov_A 351 AHRREVILARSRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENK 398 (496)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHTTSSSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCH
Confidence 688888899999999999999999999999888889999988877765
No 96
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=61.68 E-value=12 Score=32.85 Aligned_cols=48 Identities=21% Similarity=0.271 Sum_probs=36.5
Q ss_pred hHhHHHHHHHHHHHHHHHHHHhhhcccCchhhhhHHHHHhhhhcCCCCcccccC
Q 037836 21 RRELAKVQVLEREISFLEEELKTVDRFHPASRSCKEVADFVVAKSDPLIPVNRK 74 (163)
Q Consensus 21 hR~~Aelq~LeqEI~fLEEEL~~LE~~~paS~~CKEv~~~Ves~pDPLLP~t~g 74 (163)
..+.++++.|..+|.-||++++++|. --.+++..|-..+||-.|+.+.
T Consensus 72 ~~l~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ipN~~~~~vP~g~~ 119 (455)
T 2dq0_A 72 DELLAKSREIVKRIGELENEVEELKK------KIDYYLWRLPNITHPSVPVGKD 119 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHTTSCCCCCTTSCCCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHhCCCCCCccCCCCCC
Confidence 45677888888888888888888773 3467777888888898888654
No 97
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=61.62 E-value=8.1 Score=27.12 Aligned_cols=18 Identities=28% Similarity=0.488 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHhhhc
Q 037836 28 QVLEREISFLEEELKTVD 45 (163)
Q Consensus 28 q~LeqEI~fLEEEL~~LE 45 (163)
.+|..||..|+.||..|-
T Consensus 53 ~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 53 ERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344445555555554443
No 98
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=61.43 E-value=7.1 Score=30.14 Aligned_cols=19 Identities=42% Similarity=0.525 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 037836 24 LAKVQVLEREISFLEEELK 42 (163)
Q Consensus 24 ~Aelq~LeqEI~fLEEEL~ 42 (163)
|++|+.|+-||.-|.++|+
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq 88 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQ 88 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555444
No 99
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=61.39 E-value=6.2 Score=33.77 Aligned_cols=39 Identities=18% Similarity=0.342 Sum_probs=26.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhhcccC----------c--hhhhhHHHHHh
Q 037836 22 RELAKVQVLEREISFLEEELKTVDRFH----------P--ASRSCKEVADF 60 (163)
Q Consensus 22 R~~Aelq~LeqEI~fLEEEL~~LE~~~----------p--aS~~CKEv~~~ 60 (163)
-++++|.+|+++|..||.+|.+++.+- | .-+-|+||...
T Consensus 32 ~Lq~~le~L~~KI~~LE~~v~~q~~~~~~~~~~~~~~p~~~~~dC~~i~~~ 82 (323)
T 1lwu_B 32 SMKSVLEHLRAKMQRMEEAIKTQKELCSAPCTVNCRVPVVSGMHCEDIYRN 82 (323)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHTTSSBCEECCCEESCCBSSHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCHHHHHhc
Confidence 366778888888888888887665441 1 12478888764
No 100
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=61.26 E-value=9.2 Score=24.90 Aligned_cols=24 Identities=38% Similarity=0.368 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcc
Q 037836 23 ELAKVQVLEREISFLEEELKTVDR 46 (163)
Q Consensus 23 ~~Aelq~LeqEI~fLEEEL~~LE~ 46 (163)
+..+|..|+.|-..|.+||+.|..
T Consensus 27 LE~~v~~L~~eN~~L~~~~~~L~~ 50 (55)
T 1dh3_A 27 LENRVAVLENQNKTLIEELKALKD 50 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888888888877754
No 101
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=61.03 E-value=6.1 Score=27.51 Aligned_cols=26 Identities=15% Similarity=0.181 Sum_probs=16.8
Q ss_pred hHhHHHHHHHHHHHHHHHHHHhhhcc
Q 037836 21 RRELAKVQVLEREISFLEEELKTVDR 46 (163)
Q Consensus 21 hR~~Aelq~LeqEI~fLEEEL~~LE~ 46 (163)
.-+..+++.|+++|..|++-++.|+.
T Consensus 77 ~~l~~~~~~l~~~i~~l~~~~~~l~~ 102 (108)
T 2vz4_A 77 AHLRRQHELLSARIGKLQKMAAAVEQ 102 (108)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777777777766666654
No 102
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=60.77 E-value=7 Score=27.45 Aligned_cols=33 Identities=24% Similarity=0.221 Sum_probs=23.7
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHhhhcccCchh
Q 037836 19 GKRRELAKVQVLEREISFLEEELKTVDRFHPAS 51 (163)
Q Consensus 19 GKhR~~Aelq~LeqEI~fLEEEL~~LE~~~paS 51 (163)
|.|-..++||.+|.+=.-||+.+..||+-=..|
T Consensus 1 ~~~~~~~kLq~~E~~N~~Le~~v~~le~~Le~s 33 (72)
T 3cve_A 1 GSHNSHMKLQEVEIRNKDLEGQLSEMEQRLEKS 33 (72)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 678888889888888888888888777654443
No 103
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=60.57 E-value=7.2 Score=35.71 Aligned_cols=48 Identities=10% Similarity=0.113 Sum_probs=41.7
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHhhhcccCchhhhhHHHHHhhhhcCCC
Q 037836 20 KRRELAKVQVLEREISFLEEELKTVDRFHPASRSCKEVADFVVAKSDP 67 (163)
Q Consensus 20 KhR~~Aelq~LeqEI~fLEEEL~~LE~~~paS~~CKEv~~~Ves~pDP 67 (163)
.||+..=.+|.+-+++-+|++++-|||+-.|-..-.||+..|.+..|+
T Consensus 375 ~~R~~v~~rR~~~~L~k~~~r~hilegl~~a~~~id~vI~iIr~s~~~ 422 (514)
T 2inr_A 375 NHQIEVVANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNK 422 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCCSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 588888889999999999999999999988887789999888777764
No 104
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=60.29 E-value=7.3 Score=25.63 Aligned_cols=25 Identities=16% Similarity=0.205 Sum_probs=21.1
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHhhh
Q 037836 20 KRRELAKVQVLEREISFLEEELKTV 44 (163)
Q Consensus 20 KhR~~Aelq~LeqEI~fLEEEL~~L 44 (163)
+.|..-||..|++-++-|++|++.+
T Consensus 22 ~~rRfdEV~~L~~NL~EL~~E~~~~ 46 (48)
T 3v1a_A 22 AAGRMDEVRTLQENLHQLMHEYFQQ 46 (48)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HhcChHHHHHHHHHHHHHHHHHHhh
Confidence 4567789999999999999998765
No 105
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=60.06 E-value=7.5 Score=26.60 Aligned_cols=22 Identities=18% Similarity=0.280 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc
Q 037836 24 LAKVQVLEREISFLEEELKTVD 45 (163)
Q Consensus 24 ~Aelq~LeqEI~fLEEEL~~LE 45 (163)
-.+|..|++-|+.||+||+.++
T Consensus 40 E~ev~~L~kKiq~lE~eld~~e 61 (81)
T 1ic2_A 40 EDELVALQKKLKGTEDELDKYS 61 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3457788888888888887664
No 106
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=60.04 E-value=9.7 Score=26.85 Aligned_cols=14 Identities=29% Similarity=0.309 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHH
Q 037836 28 QVLEREISFLEEEL 41 (163)
Q Consensus 28 q~LeqEI~fLEEEL 41 (163)
+.||.+|...++|+
T Consensus 43 ~eLEk~L~ekd~eI 56 (72)
T 3nmd_A 43 DELELELDQKDELI 56 (72)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 107
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=60.01 E-value=8 Score=25.92 Aligned_cols=20 Identities=5% Similarity=0.242 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHhhhcc
Q 037836 27 VQVLEREISFLEEELKTVDR 46 (163)
Q Consensus 27 lq~LeqEI~fLEEEL~~LE~ 46 (163)
++.|++++..|++++++|+.
T Consensus 41 ~~~L~~~~~~l~~~i~~L~~ 60 (99)
T 1q08_A 41 KGIVQERLQEVEARIAELQS 60 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666665544
No 108
>1h7c_A Tubulin-specific chaperone A; protein folding, cofactor A; 1.8A {Homo sapiens} SCOP: a.7.5.1
Probab=59.91 E-value=8.6 Score=28.16 Aligned_cols=38 Identities=32% Similarity=0.317 Sum_probs=22.7
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHhhhcccCchhhhhHHHHHhhh
Q 037836 20 KRRELAKVQVLEREISFLEEELKTVDRFHPASRSCKEVADFVV 62 (163)
Q Consensus 20 KhR~~Aelq~LeqEI~fLEEEL~~LE~~~paS~~CKEv~~~Ve 62 (163)
++|++++++.|++ ||++| +.+++++....+ +|+++.+.
T Consensus 68 ~~Rl~~a~~~L~~---~l~~e-~~~~~~ee~~~A-ke~l~~a~ 105 (108)
T 1h7c_A 68 QRRLEAAYLDLQR---ILENE-KDLEEAEEYKEA-RLVLDSVK 105 (108)
T ss_dssp HHHHHHHHHHHHH---HHHHC-GGGTTSHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHH---HHHhc-ccCCCcHHHHHH-HHHHHHHH
Confidence 4678888888877 44444 455555544433 66666554
No 109
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=59.82 E-value=8.9 Score=26.56 Aligned_cols=20 Identities=35% Similarity=0.536 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 037836 25 AKVQVLEREISFLEEELKTV 44 (163)
Q Consensus 25 Aelq~LeqEI~fLEEEL~~L 44 (163)
.+|+.|+.++..|+++++++
T Consensus 84 ~~i~~le~~~~~l~~~l~~l 103 (117)
T 2zqm_A 84 VRLNALERQEKKLNEKLKEL 103 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443
No 110
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=59.77 E-value=5.8 Score=29.70 Aligned_cols=23 Identities=30% Similarity=0.553 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhc
Q 037836 23 ELAKVQVLEREISFLEEELKTVD 45 (163)
Q Consensus 23 ~~Aelq~LeqEI~fLEEEL~~LE 45 (163)
.+++|+.|+-||.-|..+|+...
T Consensus 65 qq~~v~elqgEI~~Lnq~Lqda~ 87 (99)
T 3ni0_A 65 QQARIKELENEVTKLNQELENLR 87 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778888888888888887765
No 111
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=59.46 E-value=8 Score=26.87 Aligned_cols=24 Identities=17% Similarity=0.324 Sum_probs=11.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhhc
Q 037836 22 RELAKVQVLEREISFLEEELKTVD 45 (163)
Q Consensus 22 R~~Aelq~LeqEI~fLEEEL~~LE 45 (163)
-+..+++.|+++|..|++-++.|+
T Consensus 79 ~l~~~~~~l~~~i~~l~~~~~~l~ 102 (109)
T 1r8d_A 79 ALQSQKEILMKKKQRMDEMIQTID 102 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555554444444
No 112
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=59.34 E-value=11 Score=26.99 Aligned_cols=19 Identities=21% Similarity=0.347 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 037836 26 KVQVLEREISFLEEELKTV 44 (163)
Q Consensus 26 elq~LeqEI~fLEEEL~~L 44 (163)
|-.+|+++|..+++||..|
T Consensus 35 EN~~Lh~~ie~~~eEi~~L 53 (79)
T 2zxx_A 35 ENEKLHKEIEQKDSEIARL 53 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455666666666655443
No 113
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=58.89 E-value=10 Score=37.57 Aligned_cols=38 Identities=18% Similarity=0.183 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccCchhhhhHHHHHhhh
Q 037836 25 AKVQVLEREISFLEEELKTVDRFHPASRSCKEVADFVV 62 (163)
Q Consensus 25 Aelq~LeqEI~fLEEEL~~LE~~~paS~~CKEv~~~Ve 62 (163)
.|++.|++|+..|++||+.|+++.+..---+||.+|.+
T Consensus 1127 ee~ekL~~E~~e~~~ei~~L~~~s~~~lw~~DLd~~~~ 1164 (1177)
T 4gfh_A 1127 ERYQKLLKQKQEKETELENLLKLSAKDIWNTDLKAFEV 1164 (1177)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 58999999999999999999999877666677777654
No 114
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=58.62 E-value=9.3 Score=29.02 Aligned_cols=26 Identities=8% Similarity=0.152 Sum_probs=20.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhhccc
Q 037836 22 RELAKVQVLEREISFLEEELKTVDRF 47 (163)
Q Consensus 22 R~~Aelq~LeqEI~fLEEEL~~LE~~ 47 (163)
++...|.+++++|..||+++++||..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (192)
T 2gkw_A 11 RHDQMLSVHDIRLADMDLRFQVLETA 36 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 44456777788888999889888875
No 115
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=58.54 E-value=3.4 Score=29.99 Aligned_cols=23 Identities=30% Similarity=0.297 Sum_probs=15.0
Q ss_pred hHhHHHHHHHHHHHHHHHHHHhh
Q 037836 21 RRELAKVQVLEREISFLEEELKT 43 (163)
Q Consensus 21 hR~~Aelq~LeqEI~fLEEEL~~ 43 (163)
=|+|-+|-.||.++.-||+||++
T Consensus 61 iRLQKKImdLE~~~~~l~~el~~ 83 (88)
T 1uuj_A 61 IRLQKKVMELESKLNEAKEEFTS 83 (88)
T ss_dssp HHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 37788888888888888877764
No 116
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=58.52 E-value=4.7 Score=28.35 Aligned_cols=18 Identities=22% Similarity=0.259 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 037836 27 VQVLEREISFLEEELKTV 44 (163)
Q Consensus 27 lq~LeqEI~fLEEEL~~L 44 (163)
+..|++|=.-|+.|+++|
T Consensus 45 ~~~L~~eN~~L~~~v~~L 62 (78)
T 1gu4_A 45 VLELTAENERLQKKVEQL 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444444
No 117
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=58.33 E-value=8.2 Score=36.73 Aligned_cols=48 Identities=15% Similarity=0.159 Sum_probs=44.0
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHhhhcccCchhhhhHHHHHhhhhcCCC
Q 037836 20 KRRELAKVQVLEREISFLEEELKTVDRFHPASRSCKEVADFVVAKSDP 67 (163)
Q Consensus 20 KhR~~Aelq~LeqEI~fLEEEL~~LE~~~paS~~CKEv~~~Ves~pDP 67 (163)
.||+..=.+|.+-+++-+|++++-|||+-.|-..-.||++.+.+..||
T Consensus 326 ~~R~~v~~rR~~~~L~k~~~r~hiLegl~ia~~~iDeVI~iIR~s~~~ 373 (716)
T 1zvu_A 326 VFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEP 373 (716)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHSSSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHhcCch
Confidence 688888899999999999999999999999988899999999988886
No 118
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=58.03 E-value=7.3 Score=27.90 Aligned_cols=17 Identities=41% Similarity=0.515 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 037836 25 AKVQVLEREISFLEEEL 41 (163)
Q Consensus 25 Aelq~LeqEI~fLEEEL 41 (163)
++|++|++|+..|.+-|
T Consensus 57 ~~v~~L~~E~~~Lr~ll 73 (87)
T 1hjb_A 57 KKVEQLSRELSTLRNLF 73 (87)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 119
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=57.42 E-value=14 Score=33.40 Aligned_cols=47 Identities=23% Similarity=0.217 Sum_probs=36.5
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHhhhcccCchhhhhHHHHHhhhhcCCCCcccc
Q 037836 20 KRRELAKVQVLEREISFLEEELKTVDRFHPASRSCKEVADFVVAKSDPLIPVN 72 (163)
Q Consensus 20 KhR~~Aelq~LeqEI~fLEEEL~~LE~~~paS~~CKEv~~~Ves~pDPLLP~t 72 (163)
-+.+.++++.|.++|..||+||+++| .--++++..|-..+||-.|+.
T Consensus 175 Y~~l~~eV~pLk~eLk~lE~eL~e~e------~eL~~lll~ipN~~~~~vp~g 221 (536)
T 3err_A 175 YADMLKRVEPLRNELQKLEDDAKDNQ------QKLEALLLQVPLPPWPGAPVG 221 (536)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHTTCCCCCCTTSCCS
T ss_pred hHHHHHhhhhhHHHHHHHHHHHHHHH------HHHHHHhcCCCCCCCCCCCCC
Confidence 35677778888888888888887765 355788888888999999976
No 120
>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A*
Probab=57.03 E-value=9.1 Score=36.31 Aligned_cols=48 Identities=4% Similarity=0.056 Sum_probs=42.0
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHhhhcccCchhhhhHHHHHhhhhcCCC
Q 037836 20 KRRELAKVQVLEREISFLEEELKTVDRFHPASRSCKEVADFVVAKSDP 67 (163)
Q Consensus 20 KhR~~Aelq~LeqEI~fLEEEL~~LE~~~paS~~CKEv~~~Ves~pDP 67 (163)
.||+..=.+|.+-+++.+|++++-|||+-.|-.--.||+..+.+..||
T Consensus 558 ~~R~~v~~rR~~~~L~k~~~r~hilegl~~a~~~iD~vI~iIr~s~~~ 605 (692)
T 2xcs_B 558 EHQKTVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTD 605 (692)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTCSSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHhCCCH
Confidence 588888888999999999999999999988888888999988888776
No 121
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=56.70 E-value=13 Score=24.18 Aligned_cols=24 Identities=17% Similarity=0.216 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcc
Q 037836 23 ELAKVQVLEREISFLEEELKTVDR 46 (163)
Q Consensus 23 ~~Aelq~LeqEI~fLEEEL~~LE~ 46 (163)
+.++-..|..||..|++|+..|.+
T Consensus 34 L~~~n~~L~~~v~~L~~e~~~Lk~ 57 (62)
T 1jnm_A 34 LKAQNSELASTANMLREQVAQLKQ 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666666654
No 122
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=56.64 E-value=16 Score=21.88 Aligned_cols=25 Identities=12% Similarity=0.304 Sum_probs=20.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhhcc
Q 037836 22 RELAKVQVLEREISFLEEELKTVDR 46 (163)
Q Consensus 22 R~~Aelq~LeqEI~fLEEEL~~LE~ 46 (163)
-|..||.++.+.|..|-|-|+.+|+
T Consensus 3 ~IkkELtQIK~kvDsLLe~Le~~~~ 27 (28)
T 1txp_A 3 AIKKELTQIKQKVDSLLENLEKIEK 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4677899999999999888877764
No 123
>2cly_B ATP synthase D chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.53.1.1 PDB: 2wss_U*
Probab=56.64 E-value=9.4 Score=29.61 Aligned_cols=26 Identities=19% Similarity=0.275 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHhhhcccCchhh
Q 037836 27 VQVLEREISFLEEELKTVDRFHPASR 52 (163)
Q Consensus 27 lq~LeqEI~fLEEEL~~LE~~~paS~ 52 (163)
++..+.+|..||+||+.|+++-|.+.
T Consensus 104 ~~~s~~ri~~lekeL~~i~~~~P~~~ 129 (160)
T 2cly_B 104 LTQSKTRIQEYEKELEKMRNIIPFDQ 129 (160)
T ss_dssp HHHHHHHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHHHHHHHHHHcCCChHh
Confidence 66677899999999999999998876
No 124
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=56.37 E-value=9.7 Score=33.35 Aligned_cols=28 Identities=25% Similarity=0.427 Sum_probs=19.4
Q ss_pred hHhHHHHHHHHHHHHHHHHHHhhhcccC
Q 037836 21 RRELAKVQVLEREISFLEEELKTVDRFH 48 (163)
Q Consensus 21 hR~~Aelq~LeqEI~fLEEEL~~LE~~~ 48 (163)
+|+.++.+.|++++..|+|||+.|....
T Consensus 42 ~~l~~~~~~l~~~~~~~~~e~~~l~~~~ 69 (405)
T 4b4t_J 42 RRLEAQRNALNDKVRFIKDELRLLQEPG 69 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3556666677777778888887776643
No 125
>3bj4_A Potassium voltage-gated channel subfamily KQT member 1; coiled coil, alternative splicing, deafness, disease mutation, glycoprotein, ION transport; 2.00A {Homo sapiens}
Probab=56.32 E-value=12 Score=24.77 Aligned_cols=29 Identities=17% Similarity=0.336 Sum_probs=23.8
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHhhhccc
Q 037836 19 GKRRELAKVQVLEREISFLEEELKTVDRF 47 (163)
Q Consensus 19 GKhR~~Aelq~LeqEI~fLEEEL~~LE~~ 47 (163)
|+--+++.|.++|+++..++.-|+.|=.+
T Consensus 11 ~~~S~~~Rl~rVE~qV~~md~KLd~l~~~ 39 (49)
T 3bj4_A 11 GSNTIGARLNRVEDKVTQLDQRLALITDM 39 (49)
T ss_dssp -CCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56668899999999999999999887543
No 126
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=56.16 E-value=5.2 Score=24.54 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcc
Q 037836 23 ELAKVQVLEREISFLEEELKTVDR 46 (163)
Q Consensus 23 ~~Aelq~LeqEI~fLEEEL~~LE~ 46 (163)
++-+|+.|++|..-+||++..++.
T Consensus 9 vKkKiq~lq~q~d~aee~~~~~~~ 32 (37)
T 3azd_A 9 VRRKIRSLQEQNYHLENEVARLKK 32 (37)
T ss_dssp HHHHHHHHHHHTTTTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677788888778877777654
No 127
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=56.04 E-value=16 Score=21.55 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhhh
Q 037836 23 ELAKVQVLEREISFLEEELKTV 44 (163)
Q Consensus 23 ~~Aelq~LeqEI~fLEEEL~~L 44 (163)
+..|+-.|.-|++-|++|.+.|
T Consensus 5 lkdevgelkgevralkdevkdl 26 (27)
T 3v86_A 5 LKDEVGELKGEVRALKDEVKDL 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhHHHHHHHHHhcc
Confidence 4457777888888888888765
No 128
>3d24_B Peroxisome proliferator-activated receptor gamma coactivator 1-alpha; nuclear receptor, ligand binding domain, DNA- binding, metal-binding, nucleus; 2.11A {Homo sapiens}
Probab=56.02 E-value=5.3 Score=23.66 Aligned_cols=21 Identities=24% Similarity=0.689 Sum_probs=19.2
Q ss_pred CchhhhhHHHHHhhhhcCCCC
Q 037836 48 HPASRSCKEVADFVVAKSDPL 68 (163)
Q Consensus 48 ~paS~~CKEv~~~Ves~pDPL 68 (163)
+++||-|.||+..+-+.+|++
T Consensus 4 ~~qrRpCtELlKyLTs~~~~~ 24 (26)
T 3d24_B 4 KPQRRPCSELLKYLTTNDDXX 24 (26)
T ss_pred CccCCcHHHHHHHHhcCCccc
Confidence 688999999999999999885
No 129
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=56.01 E-value=9 Score=32.11 Aligned_cols=27 Identities=30% Similarity=0.306 Sum_probs=22.3
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHhhhcc
Q 037836 20 KRRELAKVQVLEREISFLEEELKTVDR 46 (163)
Q Consensus 20 KhR~~Aelq~LeqEI~fLEEEL~~LE~ 46 (163)
+..+++++++|+.||.-||++.+++.+
T Consensus 187 ie~L~~~~~~L~eEi~~Le~~~e~~~k 213 (315)
T 2ve7_A 187 LESLEAKNRALNEQIARLEQERSTANK 213 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 457788899999999999888877776
No 130
>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}
Probab=56.00 E-value=29 Score=29.44 Aligned_cols=46 Identities=15% Similarity=0.154 Sum_probs=37.0
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHhh-------------hcccCchhh--hhHHHHHhhhhc
Q 037836 19 GKRRELAKVQVLEREISFLEEELKT-------------VDRFHPASR--SCKEVADFVVAK 64 (163)
Q Consensus 19 GKhR~~Aelq~LeqEI~fLEEEL~~-------------LE~~~paS~--~CKEv~~~Ves~ 64 (163)
.|--..++|..|..|+..||+.|.. +||++.|-. .-+.|.+.++.+
T Consensus 42 ~k~~y~~~l~~L~~~L~~lQ~~l~~~~~~~~~~~vlIvfEG~DaAGKgg~Ik~l~~~ldPR 102 (289)
T 3rhf_A 42 VKADGKALLAAQDARLAELQEKLFAEGKFGNPKRLLLILQAMDTAGKGGIVSHVVGAMDPQ 102 (289)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEEECTTSSHHHHHHHHHHHSCGG
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCcEEEEEECCCCCChHHHHHHHHHhcCcC
Confidence 5667888999999999999999965 578888866 777777776543
No 131
>2doh_C Fragment, plasminogen-binding group A streptococcal M-like PAM; lysine-binding site, kringle domains, hydrolase; HET: DIO; 2.30A {Homo sapiens} PDB: 2kj4_B 1i5k_C 2doi_C
Probab=55.97 E-value=11 Score=22.99 Aligned_cols=22 Identities=32% Similarity=0.333 Sum_probs=16.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhh
Q 037836 22 RELAKVQVLEREISFLEEELKTV 44 (163)
Q Consensus 22 R~~Aelq~LeqEI~fLEEEL~~L 44 (163)
+-.|||++|.+| +..++||+.|
T Consensus 5 ~d~~eL~rLknE-Rh~~~elerl 26 (30)
T 2doh_C 5 TADAELQRLKNE-RHEEAELERL 26 (30)
T ss_dssp CHHHHHHHHHHH-HHHHHHHHHC
T ss_pred HHHHHHHHHHHH-HHHHHHHHHH
Confidence 346899999887 5667776654
No 132
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=55.80 E-value=16 Score=27.52 Aligned_cols=18 Identities=17% Similarity=0.139 Sum_probs=8.6
Q ss_pred hHhHHHHHHHHHHHHHHH
Q 037836 21 RRELAKVQVLEREISFLE 38 (163)
Q Consensus 21 hR~~Aelq~LeqEI~fLE 38 (163)
.+++++|+.|+.++.-|+
T Consensus 10 ~~L~~~i~~l~~~L~~lk 27 (122)
T 3viq_A 10 LKLEKEVRNLQEQLITAE 27 (122)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344445555555544443
No 133
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=55.57 E-value=13 Score=25.84 Aligned_cols=25 Identities=12% Similarity=0.060 Sum_probs=19.0
Q ss_pred hHhHHHHHHHHHHHHHHHHHHhhhc
Q 037836 21 RRELAKVQVLEREISFLEEELKTVD 45 (163)
Q Consensus 21 hR~~Aelq~LeqEI~fLEEEL~~LE 45 (163)
.|..++++.++..|..||+||.++-
T Consensus 24 ~~~~~~l~~~q~~i~~lE~el~~~r 48 (86)
T 1x8y_A 24 DSLARERDTSRRLLAEKEREMAEMR 48 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556778888888888888887763
No 134
>4e6u_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; lipopolysaccaride synthesis; 1.41A {Acinetobacter baumannii} PDB: 4e6t_A*
Probab=55.37 E-value=5.5 Score=31.04 Aligned_cols=29 Identities=7% Similarity=0.119 Sum_probs=20.7
Q ss_pred HHHHHHhhhcc-cCchhhhhHHHHHhhhhc
Q 037836 36 FLEEELKTVDR-FHPASRSCKEVADFVVAK 64 (163)
Q Consensus 36 fLEEEL~~LE~-~~paS~~CKEv~~~Ves~ 64 (163)
.|+|.|++|+. ..+.+.--+++++|+++.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 259 (265)
T 4e6u_A 230 TSVQAIDQIKSEILPSVPEAQLLIDSLEQS 259 (265)
T ss_dssp CHHHHHHHHHHHTTTTCGGGHHHHHHHHHC
T ss_pred CHHHHHHHHHhhhcCCCHHHHHHHHHHhhc
Confidence 36778888876 555555678999998753
No 135
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=55.22 E-value=12 Score=27.58 Aligned_cols=23 Identities=17% Similarity=0.182 Sum_probs=14.9
Q ss_pred hHhHHHHHHHHHHHHHHHHHHhh
Q 037836 21 RRELAKVQVLEREISFLEEELKT 43 (163)
Q Consensus 21 hR~~Aelq~LeqEI~fLEEEL~~ 43 (163)
.+++.+++.|++||..|+++|-.
T Consensus 35 ~~l~~e~k~l~ke~~~l~~~~a~ 57 (171)
T 2zvf_A 35 ERFFEEWKDQRKEIERLKSVIAD 57 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666677777777766666543
No 136
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=55.22 E-value=17 Score=31.46 Aligned_cols=46 Identities=24% Similarity=0.198 Sum_probs=33.2
Q ss_pred hHhHHHHHHHHHHHHHHHHHHhhhcccCchhhhhHHHHHhhhhcCCCCcccc
Q 037836 21 RRELAKVQVLEREISFLEEELKTVDRFHPASRSCKEVADFVVAKSDPLIPVN 72 (163)
Q Consensus 21 hR~~Aelq~LeqEI~fLEEEL~~LE~~~paS~~CKEv~~~Ves~pDPLLP~t 72 (163)
..+.++++.|..+|.-||++++++| .--.+++..|-..+||=.|+.
T Consensus 67 ~~l~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ipN~~~~~vp~g 112 (421)
T 1ses_A 67 EALIARGKALGEEAKRLEEALREKE------ARLEALLLQVPLPPWPGAPVG 112 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHTTCCCCCCTTSCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhCCCCCCCCCCCC
Confidence 3456777777777777777777776 234667777888888888875
No 137
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=55.16 E-value=12 Score=28.90 Aligned_cols=25 Identities=12% Similarity=0.220 Sum_probs=17.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhhcc
Q 037836 22 RELAKVQVLEREISFLEEELKTVDR 46 (163)
Q Consensus 22 R~~Aelq~LeqEI~fLEEEL~~LE~ 46 (163)
-++.||+.|+|+++-.++|+++|-.
T Consensus 75 eLqgEI~~Lnq~Lq~a~ae~erlr~ 99 (121)
T 3mq7_A 75 ELEGEITTLNHKLQDASAEVERLRR 99 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566777777777777777777643
No 138
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=54.94 E-value=10 Score=27.64 Aligned_cols=24 Identities=29% Similarity=0.274 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcc
Q 037836 23 ELAKVQVLEREISFLEEELKTVDR 46 (163)
Q Consensus 23 ~~Aelq~LeqEI~fLEEEL~~LE~ 46 (163)
++.+++.|+++|..|++-++.|+.
T Consensus 84 l~~~~~~l~~~i~~L~~~~~~L~~ 107 (135)
T 1q06_A 84 TLEKVAEIERHIEELQSMRDQLLA 107 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666655555543
No 139
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=54.83 E-value=9.2 Score=27.71 Aligned_cols=25 Identities=24% Similarity=0.442 Sum_probs=15.9
Q ss_pred HhHHHHHHHH----HHHHHHHHHHhhhcc
Q 037836 22 RELAKVQVLE----REISFLEEELKTVDR 46 (163)
Q Consensus 22 R~~Aelq~Le----qEI~fLEEEL~~LE~ 46 (163)
+..++|+.|- .||.+-++||+.||.
T Consensus 37 kekEqL~~LKkkl~~el~~h~~ei~~le~ 65 (84)
T 1gmj_A 37 RAKEQLAALKKHKENEISHHAKEIERLQK 65 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444454444 677887777777765
No 140
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=54.52 E-value=13 Score=26.89 Aligned_cols=24 Identities=17% Similarity=0.284 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCc
Q 037836 26 KVQVLEREISFLEEELKTVDRFHP 49 (163)
Q Consensus 26 elq~LeqEI~fLEEEL~~LE~~~p 49 (163)
|-+.|.++|.-|+||+..|...-.
T Consensus 47 EN~~Lh~~ie~l~eEi~~lk~en~ 70 (83)
T 1uii_A 47 ENEKLHKEIEQKDNEIARLKKENK 70 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666667766666554433
No 141
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=54.29 E-value=15 Score=24.09 Aligned_cols=19 Identities=37% Similarity=0.382 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 037836 24 LAKVQVLEREISFLEEELK 42 (163)
Q Consensus 24 ~Aelq~LeqEI~fLEEEL~ 42 (163)
+.++..|+.|-.-|++|++
T Consensus 29 e~~v~~L~~~n~~L~~ei~ 47 (63)
T 2wt7_A 29 QAETDQLEDEKSALQTEIA 47 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444333333333
No 142
>2qup_A BH1478 protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Bacillus halodurans}
Probab=54.19 E-value=12 Score=28.44 Aligned_cols=26 Identities=15% Similarity=0.294 Sum_probs=24.2
Q ss_pred CchhhhHhHHHHHHHHHHHHHHHHHH
Q 037836 16 DLYGKRRELAKVQVLEREISFLEEEL 41 (163)
Q Consensus 16 D~~GKhR~~Aelq~LeqEI~fLEEEL 41 (163)
|.+|+||...-|+..++++..|.+||
T Consensus 94 ~r~gr~r~y~iV~~ID~kL~eLt~~l 119 (145)
T 2qup_A 94 NRRGRTKIYKIVKEVDRKLLDLTDAV 119 (145)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCeeEEeehhHHhHHHHHHHHHH
Confidence 56899999999999999999999987
No 143
>3hfe_A Potassium voltage-gated channel subfamily KQT MEM; trimer, atrial fibrillation, cell membrane, cytoplasmic VESI deafness, disease mutation; 1.70A {Homo sapiens} PDB: 3hfc_A
Probab=53.98 E-value=12 Score=22.97 Aligned_cols=26 Identities=19% Similarity=0.358 Sum_probs=20.7
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHhhh
Q 037836 19 GKRRELAKVQVLEREISFLEEELKTV 44 (163)
Q Consensus 19 GKhR~~Aelq~LeqEI~fLEEEL~~L 44 (163)
|.--+-|.|.|+|++|..+..-|+.|
T Consensus 4 g~nTIGaRLnRvE~k~t~MD~kL~~i 29 (31)
T 3hfe_A 4 GSNTIGARLNRVEDKVTQLDQRLALI 29 (31)
T ss_dssp -CCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHh
Confidence 44445678999999999999988876
No 144
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=53.93 E-value=11 Score=34.13 Aligned_cols=48 Identities=13% Similarity=0.041 Sum_probs=42.4
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHhhhcccCchhhhhHHHHHhhhhcCCC
Q 037836 20 KRRELAKVQVLEREISFLEEELKTVDRFHPASRSCKEVADFVVAKSDP 67 (163)
Q Consensus 20 KhR~~Aelq~LeqEI~fLEEEL~~LE~~~paS~~CKEv~~~Ves~pDP 67 (163)
.||+..=.+|++-+++-+|+.++-|||+-.|-..-.||+..+.+..|+
T Consensus 337 ~~R~~~~~rR~~~~L~k~~~r~hilegl~~a~~~iD~vI~iIr~s~~~ 384 (470)
T 3ilw_A 337 DHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETV 384 (470)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHCSSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 688888899999999999999999999999988889999888776654
No 145
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=53.80 E-value=13 Score=26.99 Aligned_cols=25 Identities=20% Similarity=0.332 Sum_probs=17.1
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHhhh
Q 037836 20 KRRELAKVQVLEREISFLEEELKTV 44 (163)
Q Consensus 20 KhR~~Aelq~LeqEI~fLEEEL~~L 44 (163)
|-+++.+|..-.+||.-||++|+.+
T Consensus 46 Kkkl~~el~~h~~ei~~le~~i~rh 70 (84)
T 1gmj_A 46 KKHKENEISHHAKEIERLQKEIERH 70 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777777777777777654
No 146
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=53.78 E-value=13 Score=32.16 Aligned_cols=47 Identities=30% Similarity=0.440 Sum_probs=35.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhhcccCchhhhhHHHHHhhhhcCCCCcccccC
Q 037836 22 RELAKVQVLEREISFLEEELKTVDRFHPASRSCKEVADFVVAKSDPLIPVNRK 74 (163)
Q Consensus 22 R~~Aelq~LeqEI~fLEEEL~~LE~~~paS~~CKEv~~~Ves~pDPLLP~t~g 74 (163)
.+.++++.|..+|.-||++++++|. --.+++..|-..+||=.|+.+.
T Consensus 72 ~l~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ipN~~~~~vp~g~~ 118 (425)
T 2dq3_A 72 EIQNRVKELKEEIDRLEEELRKVEE------ELKNTLLWIPNLPHPSVPVGED 118 (425)
T ss_dssp TSTTHHHHHHHHHHHHHHHHHHHHH------HHHHHHHTSCCCCCTTSCCCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHhCCCCCCCCCCCCCC
Confidence 4567888888888888888888773 3467777888888888887643
No 147
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=53.64 E-value=12 Score=28.37 Aligned_cols=26 Identities=15% Similarity=0.386 Sum_probs=19.2
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHhhhc
Q 037836 20 KRRELAKVQVLEREISFLEEELKTVD 45 (163)
Q Consensus 20 KhR~~Aelq~LeqEI~fLEEEL~~LE 45 (163)
|-|++.+..+|+.++..|+-+++.|+
T Consensus 85 REkl~~eKe~L~~ql~~Lq~q~~~l~ 110 (110)
T 2v4h_A 85 REKLVEKKEYLQEQLEQLQREFNKLK 110 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHhcC
Confidence 45677777888888888887777663
No 148
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=53.41 E-value=16 Score=32.77 Aligned_cols=45 Identities=13% Similarity=0.170 Sum_probs=30.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhhcccCchhhhhHHHHHhhhhcCCCCcccc
Q 037836 22 RELAKVQVLEREISFLEEELKTVDRFHPASRSCKEVADFVVAKSDPLIPVN 72 (163)
Q Consensus 22 R~~Aelq~LeqEI~fLEEEL~~LE~~~paS~~CKEv~~~Ves~pDPLLP~t 72 (163)
.+.++++.|..||.-||++++++| .--.+++..|-..+||=.|+.
T Consensus 120 ~l~~~~~~l~~~i~~l~~~~~~~~------~~l~~~l~~iPN~~~~~vP~g 164 (501)
T 1wle_A 120 SLRARGREIRKQLTLLYPKEAQLE------EQFYLRALRLPNQTHPDVPVG 164 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHTTSCCCCCTTCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhCCCCCCCCCCCC
Confidence 345566666666666666666655 344567777888888888876
No 149
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=53.15 E-value=12 Score=29.57 Aligned_cols=24 Identities=21% Similarity=0.130 Sum_probs=15.6
Q ss_pred hHhHHHHHHHHHHHHHHHHHHhhh
Q 037836 21 RRELAKVQVLEREISFLEEELKTV 44 (163)
Q Consensus 21 hR~~Aelq~LeqEI~fLEEEL~~L 44 (163)
.+++.++.+|+++|.-|++||++-
T Consensus 71 ~~L~~El~~l~~ki~dLeeel~eK 94 (152)
T 3a7p_A 71 AILQKELKSKEQEIRRLKEVIALK 94 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777777777766543
No 150
>2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter baumannii} PDB: 2xkk_A*
Probab=53.15 E-value=11 Score=36.19 Aligned_cols=48 Identities=15% Similarity=0.200 Sum_probs=43.6
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHhhhcccCchhhhhHHHHHhhhhcCCC
Q 037836 20 KRRELAKVQVLEREISFLEEELKTVDRFHPASRSCKEVADFVVAKSDP 67 (163)
Q Consensus 20 KhR~~Aelq~LeqEI~fLEEEL~~LE~~~paS~~CKEv~~~Ves~pDP 67 (163)
.||+..=.+|++-+++-+|++++-|||+-.|-..-.||++.|.+..||
T Consensus 620 ~~R~~v~~rR~~~~L~k~~~r~hiLegl~ia~~~iD~vI~iIr~s~~~ 667 (767)
T 2xkj_E 620 EIRKKTVTRRLQYHLNRIEKRLHILAGLLIAYLDIDTVIRIIREEDQP 667 (767)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHCSSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhccch
Confidence 588888899999999999999999999988888889999999988886
No 151
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=52.79 E-value=10 Score=24.52 Aligned_cols=18 Identities=22% Similarity=0.449 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHhhhcccC
Q 037836 31 EREISFLEEELKTVDRFH 48 (163)
Q Consensus 31 eqEI~fLEEEL~~LE~~~ 48 (163)
.++|..|++.|++||.+-
T Consensus 57 ~~~~~~L~~ri~~LE~~l 74 (81)
T 1hwt_C 57 DNELKKLRERVKSLEKTL 74 (81)
T ss_dssp HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 478999999999999763
No 152
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=52.49 E-value=10 Score=27.03 Aligned_cols=18 Identities=22% Similarity=0.350 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 037836 27 VQVLEREISFLEEELKTV 44 (163)
Q Consensus 27 lq~LeqEI~fLEEEL~~L 44 (163)
+..+++||++|++||+.+
T Consensus 21 ~~gv~~~i~~Lk~eL~~m 38 (115)
T 3qfl_A 21 HKGVKKNIEDLGKELESM 38 (115)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HhchHHHHHHHHHHHHHH
Confidence 455667777777777654
No 153
>2a26_A Calcyclin-binding protein; helical hairpin, dimerization, apoptosis; HET: CXS; 1.20A {Homo sapiens} SCOP: a.2.16.1
Probab=52.34 E-value=12 Score=24.33 Aligned_cols=19 Identities=32% Similarity=0.254 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHhhhc
Q 037836 27 VQVLEREISFLEEELKTVD 45 (163)
Q Consensus 27 lq~LeqEI~fLEEEL~~LE 45 (163)
.+.|.+||+.||.||..+|
T Consensus 29 k~~L~~ei~~lE~ei~~~~ 47 (50)
T 2a26_A 29 RDALTAEKSKIETEIKNKM 47 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3457778888888877553
No 154
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=52.13 E-value=16 Score=25.12 Aligned_cols=24 Identities=13% Similarity=0.217 Sum_probs=16.2
Q ss_pred hHhHHHHHHHHHHHHHHHHHHhhh
Q 037836 21 RRELAKVQVLEREISFLEEELKTV 44 (163)
Q Consensus 21 hR~~Aelq~LeqEI~fLEEEL~~L 44 (163)
+|...+++.++..|..||+||.++
T Consensus 22 ~~~~~~~~~~q~~i~~lE~eL~~~ 45 (84)
T 1gk4_A 22 ENFAVEAANYQDTIGRLQDEIQNM 45 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777777777777777665
No 155
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=51.64 E-value=13 Score=28.01 Aligned_cols=28 Identities=29% Similarity=0.353 Sum_probs=22.4
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHhhhccc
Q 037836 20 KRRELAKVQVLEREISFLEEELKTVDRF 47 (163)
Q Consensus 20 KhR~~Aelq~LeqEI~fLEEEL~~LE~~ 47 (163)
--.++.+.-.|++||+-|+++|+.|+..
T Consensus 2 ~~~L~~~~~~L~~~i~~l~~~L~~lkqa 29 (122)
T 3viq_A 2 HMQLLSRRLKLEKEVRNLQEQLITAETA 29 (122)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777888999999999999887654
No 156
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=51.60 E-value=15 Score=25.43 Aligned_cols=22 Identities=5% Similarity=0.069 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc
Q 037836 24 LAKVQVLEREISFLEEELKTVD 45 (163)
Q Consensus 24 ~Aelq~LeqEI~fLEEEL~~LE 45 (163)
.++++.|+.+|..|++++++|+
T Consensus 70 ~~~l~~l~~~i~~l~~~i~~l~ 91 (112)
T 1l8d_A 70 HLDLNNSKNTLAKLIDRKSELE 91 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555554
No 157
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=51.37 E-value=16 Score=26.50 Aligned_cols=26 Identities=19% Similarity=0.266 Sum_probs=19.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhhccc
Q 037836 22 RELAKVQVLEREISFLEEELKTVDRF 47 (163)
Q Consensus 22 R~~Aelq~LeqEI~fLEEEL~~LE~~ 47 (163)
.++.+|..|+.||..|++|+++|-.+
T Consensus 50 ~Lh~~ie~l~eEi~~lk~en~eL~el 75 (83)
T 1uii_A 50 KLHKEIEQKDNEIARLKKENKELAEV 75 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667788888888888888777543
No 158
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=50.91 E-value=20 Score=24.69 Aligned_cols=26 Identities=12% Similarity=0.146 Sum_probs=19.6
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHhhhc
Q 037836 20 KRRELAKVQVLEREISFLEEELKTVD 45 (163)
Q Consensus 20 KhR~~Aelq~LeqEI~fLEEEL~~LE 45 (163)
--.+-++|..||++|.-|+++|..-+
T Consensus 24 le~le~~Ie~LE~~i~~le~~ladp~ 49 (89)
T 2lw1_A 24 LEQLPQLLEDLEAKLEALQTQVADAS 49 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 33456788889999999998886543
No 159
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=50.05 E-value=17 Score=24.23 Aligned_cols=13 Identities=15% Similarity=0.325 Sum_probs=6.0
Q ss_pred HHHHHHHHHhhhc
Q 037836 33 EISFLEEELKTVD 45 (163)
Q Consensus 33 EI~fLEEEL~~LE 45 (163)
.|..||.++++|+
T Consensus 31 ~~~~Le~~v~~L~ 43 (63)
T 2dgc_A 31 RMKQLEDKVEELL 43 (63)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 160
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=49.97 E-value=16 Score=31.92 Aligned_cols=23 Identities=22% Similarity=0.195 Sum_probs=10.3
Q ss_pred hHhHHHHHHHHHHHHHHHHHHhh
Q 037836 21 RRELAKVQVLEREISFLEEELKT 43 (163)
Q Consensus 21 hR~~Aelq~LeqEI~fLEEEL~~ 43 (163)
.+++.++++||+|+.+|+.|.+.
T Consensus 45 ~dl~~~lk~le~~~~~L~~e~e~ 67 (428)
T 4b4t_K 45 SDIYFKLKKLEKEYELLTLQEDY 67 (428)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555444433
No 161
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=49.68 E-value=15 Score=26.90 Aligned_cols=25 Identities=28% Similarity=0.260 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhccc
Q 037836 23 ELAKVQVLEREISFLEEELKTVDRF 47 (163)
Q Consensus 23 ~~Aelq~LeqEI~fLEEEL~~LE~~ 47 (163)
++++-+.|+++|.-|++.|+.+|.+
T Consensus 102 L~~~kkkle~e~~~Lk~~led~e~~ 126 (129)
T 2fxo_A 102 LTAKKRKLEDECSELKRDIDDLELT 126 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455556666666666666666653
No 162
>3pbf_A Pulmonary surfactant-associated protein A; collectin, carbohydrate binding, lectin, mannose, sugar BIND protein; 1.80A {Rattus norvegicus} PDB: 1r14_A* 1r13_A* 3paq_A* 3par_A 3pak_A
Probab=49.31 E-value=7.6 Score=27.02 Aligned_cols=22 Identities=9% Similarity=0.063 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHhhhcccC
Q 037836 27 VQVLEREISFLEEELKTVDRFH 48 (163)
Q Consensus 27 lq~LeqEI~fLEEEL~~LE~~~ 48 (163)
+.+|+++|..||++|..|++.-
T Consensus 4 ~e~l~~~~~~l~~~l~~~~~~~ 25 (148)
T 3pbf_A 4 DEELQTELYEIKHQILQTMGVL 25 (148)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777766543
No 163
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=49.13 E-value=15 Score=25.46 Aligned_cols=22 Identities=14% Similarity=0.125 Sum_probs=12.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhh
Q 037836 23 ELAKVQVLEREISFLEEELKTV 44 (163)
Q Consensus 23 ~~Aelq~LeqEI~fLEEEL~~L 44 (163)
+.+|++.++..|..||+||.++
T Consensus 3 l~~e~~~~~~~i~~lE~eL~~~ 24 (74)
T 2xv5_A 3 SARERDTSRRLLAEKEREMAEM 24 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666665554
No 164
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=48.78 E-value=15 Score=24.99 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcc
Q 037836 23 ELAKVQVLEREISFLEEELKTVDR 46 (163)
Q Consensus 23 ~~Aelq~LeqEI~fLEEEL~~LE~ 46 (163)
+.++.++|++++.-|..+++.|+.
T Consensus 6 ~i~~f~~lq~~~~~l~~q~~~l~~ 29 (107)
T 1fxk_A 6 QLAQFQQLQQQAQAISVQKQTVEM 29 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666653
No 165
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=48.74 E-value=19 Score=25.67 Aligned_cols=27 Identities=15% Similarity=0.234 Sum_probs=17.1
Q ss_pred hHhHHHHHHHHHHHHHHHHHHhhhccc
Q 037836 21 RRELAKVQVLEREISFLEEELKTVDRF 47 (163)
Q Consensus 21 hR~~Aelq~LeqEI~fLEEEL~~LE~~ 47 (163)
.|++.|.+.|+..|..|++..++|+..
T Consensus 49 ~~l~~E~~~l~~ni~~lk~K~~EL~~~ 75 (78)
T 3iv1_A 49 TRLDQEVAEVDKNIELLKKKDEELSSA 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666777776666666543
No 166
>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum}
Probab=48.50 E-value=16 Score=25.76 Aligned_cols=23 Identities=35% Similarity=0.632 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhc
Q 037836 23 ELAKVQVLEREISFLEEELKTVD 45 (163)
Q Consensus 23 ~~Aelq~LeqEI~fLEEEL~~LE 45 (163)
+-.+|++||+.+.+||-.|.+++
T Consensus 50 ln~kL~~lE~~L~iLEAklsSI~ 72 (73)
T 3pp5_A 50 LNEKLTILDRQVDYLEATFKTVQ 72 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHhccC
Confidence 34567889999999988887654
No 167
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=48.37 E-value=25 Score=26.56 Aligned_cols=50 Identities=20% Similarity=0.234 Sum_probs=36.6
Q ss_pred chhhhHh-HHHHHHHHHHHHHHHHHHhhhcccCchhhhhHHHHHhhhhcCCCCcccc
Q 037836 17 LYGKRRE-LAKVQVLEREISFLEEELKTVDRFHPASRSCKEVADFVVAKSDPLIPVN 72 (163)
Q Consensus 17 ~~GKhR~-~Aelq~LeqEI~fLEEEL~~LE~~~paS~~CKEv~~~Ves~pDPLLP~t 72 (163)
|-|..|+ |+.|+.|+.||...|.+|- .|..--|+-..-+|..||.+.=.+
T Consensus 26 ~~~~~~~tM~~ieeLQ~Ei~~~E~QL~------iArQKLkdAe~~~E~DPDevNK~t 76 (107)
T 2k48_A 26 FQGIDPFTMSTLQELQENITAHEQQLV------TARQKLKDAEKAVEVDPDDVNKST 76 (107)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred hhccccccHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcCCCcHHHHHH
Confidence 4566664 6788888888888877764 355567888899999999865444
No 168
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=48.19 E-value=19 Score=25.76 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=16.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhhc
Q 037836 22 RELAKVQVLEREISFLEEELKTVD 45 (163)
Q Consensus 22 R~~Aelq~LeqEI~fLEEEL~~LE 45 (163)
.+-++|+++=..|..|+.|+++|.
T Consensus 10 qLE~KIq~avdtI~lLqmEieELK 33 (81)
T 2jee_A 10 KLEAKVQQAIDTITLLQMEIEELK 33 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777777777664
No 169
>1k1f_A Breakpoint cluster region protein; oligomerization, coiled coil, BCR-ABL kinase, transferase; 2.20A {Homo sapiens} SCOP: a.147.1.1
Probab=48.13 E-value=35 Score=24.18 Aligned_cols=35 Identities=20% Similarity=0.193 Sum_probs=26.9
Q ss_pred CCCCCCCCchhhhHhHHHHHHHHHHHHHHHHHHhh
Q 037836 9 KSPPEYPDLYGKRRELAKVQVLEREISFLEEELKT 43 (163)
Q Consensus 9 KsPP~~pD~~GKhR~~Aelq~LeqEI~fLEEEL~~ 43 (163)
.+-|.+-++..-.-|..+|.+-..-|+-||+|+++
T Consensus 17 ~~epp~m~l~~vgdiEqeLe~Ck~sIrrLE~evn~ 51 (72)
T 1k1f_A 17 DSEPPRMELRSVGDIEQELERAKASIRRLEQEVNQ 51 (72)
T ss_dssp TSCCCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcHhHHhhhhHHHHHHHHHHHHHHHHHHHHhH
Confidence 34455578888788888888888888888888874
No 170
>2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A
Probab=48.10 E-value=7.4 Score=30.07 Aligned_cols=28 Identities=18% Similarity=0.273 Sum_probs=19.1
Q ss_pred HHHHHhhhcccCchhhhhHHHHHhhhhc
Q 037836 37 LEEELKTVDRFHPASRSCKEVADFVVAK 64 (163)
Q Consensus 37 LEEEL~~LE~~~paS~~CKEv~~~Ves~ 64 (163)
|+|-|++||.+.+.+.--+++++|+++.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (262)
T 2qia_A 229 LDEVKPEIAELAETYPEVKAFTDFFARS 256 (262)
T ss_dssp HHHHHHHHHHHHTTCGGGHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHhc
Confidence 5666666666554455568899998864
No 171
>1pwb_A SP-D, PSP-D, pulmonary surfactant-associated protein D; collectin, C-type lectin, alpha-helical coiled coil, carbohydrate recognition domain; HET: GLC; 1.40A {Homo sapiens} SCOP: d.169.1.1 h.1.1.1 PDB: 1pw9_A* 3ikn_A* 3ikp_A* 3ikq_A* 3ikr_A* 2rie_A* 2ggx_A* 2ggu_A* 2ork_A* 2orj_A* 2ria_A* 2rib_A* 2ric_A* 2rid_A* 2os9_A* 3dbz_A 3g81_A* 3g83_A* 1b08_A 3g84_A* ...
Probab=47.83 E-value=15 Score=26.64 Aligned_cols=31 Identities=26% Similarity=0.290 Sum_probs=16.4
Q ss_pred CCCCCCCCchhhh----HhHHHHHHHHHHHHHHHH
Q 037836 9 KSPPEYPDLYGKR----RELAKVQVLEREISFLEE 39 (163)
Q Consensus 9 KsPP~~pD~~GKh----R~~Aelq~LeqEI~fLEE 39 (163)
|-+|+.++....+ .++.+|+.|++++..|++
T Consensus 18 ~g~~g~~~~~~~~~~l~~L~~~l~~Lq~~l~~l~~ 52 (177)
T 1pwb_A 18 KGESGLPDVASLRQQVEALQGQVQHLQAAFSQYKK 52 (177)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcccccHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3344444443333 234899999999999986
No 172
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=47.69 E-value=15 Score=26.23 Aligned_cols=21 Identities=19% Similarity=0.286 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhc
Q 037836 25 AKVQVLEREISFLEEELKTVD 45 (163)
Q Consensus 25 Aelq~LeqEI~fLEEEL~~LE 45 (163)
.+|..|++.|+.||+||+.++
T Consensus 44 ~Ei~sL~kk~~~lE~eld~~e 64 (101)
T 3u1c_A 44 DDIVQLEKQLRVTEDSRDQVL 64 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456666677777777776554
No 173
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=47.54 E-value=16 Score=26.77 Aligned_cols=40 Identities=10% Similarity=-0.012 Sum_probs=27.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhhcccCchhhhhHHHHHhhh
Q 037836 22 RELAKVQVLEREISFLEEELKTVDRFHPASRSCKEVADFVV 62 (163)
Q Consensus 22 R~~Aelq~LeqEI~fLEEEL~~LE~~~paS~~CKEv~~~Ve 62 (163)
-+..+|++|..|++-||.||++|..-. |...=+++++.++
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~~~~-a~~~~~~l~~~~~ 68 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLKSVI-ADLWADILMERAE 68 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhcE
Confidence 356788999999999999999988643 3333345554443
No 174
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=47.29 E-value=15 Score=28.37 Aligned_cols=25 Identities=12% Similarity=0.155 Sum_probs=14.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhhcc
Q 037836 22 RELAKVQVLEREISFLEEELKTVDR 46 (163)
Q Consensus 22 R~~Aelq~LeqEI~fLEEEL~~LE~ 46 (163)
-+..+++.|++||..|++-++.|+.
T Consensus 83 ~l~~~~~~l~~~i~~l~~~~~~l~~ 107 (278)
T 1r8e_A 83 FYTEQERQIREKLDFLSALEQTISL 107 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666665554
No 175
>4fxw_B Splicing factor 1; UHM, protein binding, phosphorylat; HET: SEP; 2.29A {Homo sapiens} PDB: 4fxx_A
Probab=47.25 E-value=32 Score=26.15 Aligned_cols=38 Identities=32% Similarity=0.320 Sum_probs=28.1
Q ss_pred CCCCCCCCCCchhhh---HhHHHHHHHHHHHHHHHHHHhhh
Q 037836 7 CPKSPPEYPDLYGKR---RELAKVQVLEREISFLEEELKTV 44 (163)
Q Consensus 7 ~PKsPP~~pD~~GKh---R~~Aelq~LeqEI~fLEEEL~~L 44 (163)
+..|||-.=|-.|++ |.+-.-++||.|=..|=||+-.+
T Consensus 71 RSPSPpP~Yd~~G~R~NTRE~R~r~~LE~ER~~lIe~~~k~ 111 (124)
T 4fxw_B 71 RSPSPEPIYNSEGKRLNTREFRTRKKLEEERHNLITEMVAL 111 (124)
T ss_dssp SCCCCCCCBCTTSCBSSCHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred CCCCCCCccCccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455665566889986 67777888999888887776554
No 176
>3lpx_A GYRA, DNA gyrase, A subunit; topoisomraseii, ATP-binding, isomerase, nucleo binding; HET: DNA; 2.60A {Colwellia psychrerythraea} SCOP: e.11.1.1 PDB: 2wl2_A* 2y3p_A* 3nuh_A* 1ab4_A
Probab=47.09 E-value=14 Score=33.88 Aligned_cols=48 Identities=6% Similarity=0.056 Sum_probs=44.5
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHhhhcccCchhhhhHHHHHhhhhcCCC
Q 037836 20 KRRELAKVQVLEREISFLEEELKTVDRFHPASRSCKEVADFVVAKSDP 67 (163)
Q Consensus 20 KhR~~Aelq~LeqEI~fLEEEL~~LE~~~paS~~CKEv~~~Ves~pDP 67 (163)
.||+..=.+|.+-+++-+++.++-|||+-.|-.-.-||++.+-+..||
T Consensus 326 ~~R~evv~rR~~~~L~ka~~R~hileGl~~a~~~iDevI~iIR~s~~~ 373 (500)
T 3lpx_A 326 LHRREVVTRRTIFELRKARDRAHILEGLSIALANIDPIIEMIKNSNNR 373 (500)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHTTTTTCSSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCH
Confidence 688888889999999999999999999999999999999999998887
No 177
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=47.04 E-value=19 Score=25.81 Aligned_cols=21 Identities=24% Similarity=0.205 Sum_probs=14.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHh
Q 037836 22 RELAKVQVLEREISFLEEELK 42 (163)
Q Consensus 22 R~~Aelq~LeqEI~fLEEEL~ 42 (163)
+++.+|.-=|+||+.|+|.|+
T Consensus 22 ~Lr~eL~~Ke~eI~~L~e~i~ 42 (75)
T 3a7o_A 22 ILQKELKSKEQEIRRLKEVIA 42 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455566667777777777764
No 178
>4ec6_A Putative uncharacterized protein; GRAM-positive, conjugation, NTF2-like, unknown function; 2.50A {Enterococcus faecalis}
Probab=46.68 E-value=4.2 Score=32.59 Aligned_cols=41 Identities=15% Similarity=0.278 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccCchhh----hhHHHHHhhhhcC
Q 037836 25 AKVQVLEREISFLEEELKTVDRFHPASR----SCKEVADFVVAKS 65 (163)
Q Consensus 25 Aelq~LeqEI~fLEEEL~~LE~~~paS~----~CKEv~~~Ves~p 65 (163)
.+||.++.|+.-|+++++.|..+|.+.- .++=++.+-=++.
T Consensus 28 ~~~k~~kke~~~L~~qv~~vk~~q~~q~kvDvF~RyFLs~YfS~~ 72 (161)
T 4ec6_A 28 TQLQSVKKESELLEEQIERVKETDISQSKIDTFGRYFLTYYFSQE 72 (161)
T ss_dssp -------------------------CHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhCCcceeeehhhhHHHhCCC
Confidence 5689999999999999999999988653 5555555544444
No 179
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=46.59 E-value=19 Score=24.90 Aligned_cols=20 Identities=5% Similarity=0.024 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHhhhc
Q 037836 26 KVQVLEREISFLEEELKTVD 45 (163)
Q Consensus 26 elq~LeqEI~fLEEEL~~LE 45 (163)
.+...++++.-|+++|++|+
T Consensus 65 ~i~~~~~~l~~l~~~i~~l~ 84 (112)
T 1l8d_A 65 LLSKYHLDLNNSKNTLAKLI 84 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555554444
No 180
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=45.73 E-value=19 Score=33.00 Aligned_cols=43 Identities=16% Similarity=0.142 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhccc--Cch---hhhhHHHHHhhhhcCCC
Q 037836 25 AKVQVLEREISFLEEELKTVDRF--HPA---SRSCKEVADFVVAKSDP 67 (163)
Q Consensus 25 Aelq~LeqEI~fLEEEL~~LE~~--~pa---S~~CKEv~~~Ves~pDP 67 (163)
.++++|++|+..|++|+++|+.+ .+. ...=+|+.+..+.-.||
T Consensus 454 ~e~~kl~~E~~~l~~ei~~l~~iL~~~~~~~~~i~~el~~i~~~yg~~ 501 (514)
T 2inr_A 454 TDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFKSE 501 (514)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 47788888999999988888887 332 33567787777777775
No 181
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=45.66 E-value=21 Score=25.01 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccCc
Q 037836 25 AKVQVLEREISFLEEELKTVDRFHP 49 (163)
Q Consensus 25 Aelq~LeqEI~fLEEEL~~LE~~~p 49 (163)
|||...|.||.-.|.||+...|-+.
T Consensus 26 aelaafekeiaafeselqaykgkgn 50 (73)
T 2a3d_A 26 AELAAFEKEIAAFESELQAYKGKGN 50 (73)
T ss_dssp GTHHHHHHHHHHHHHHHHHSSSCCS
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCC
Confidence 5788899999999999998877543
No 182
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=45.63 E-value=21 Score=26.36 Aligned_cols=18 Identities=0% Similarity=0.200 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHhhhc
Q 037836 28 QVLEREISFLEEELKTVD 45 (163)
Q Consensus 28 q~LeqEI~fLEEEL~~LE 45 (163)
+.|++++..|++++++|+
T Consensus 98 ~~l~~~~~~l~~~i~~L~ 115 (148)
T 3gpv_A 98 KLMKQQEANVLQLIQDTE 115 (148)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 183
>2lq4_p Lysophosphatidic acid receptor 1; GPCR, G protein-coupled receptor, de novo protein; NMR {Artificial gene}
Probab=45.56 E-value=5.8 Score=28.33 Aligned_cols=20 Identities=40% Similarity=0.652 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHhhhc
Q 037836 26 KVQVLEREISFLEEELKTVD 45 (163)
Q Consensus 26 elq~LeqEI~fLEEEL~~LE 45 (163)
|+|.||.|+..||.||+.-.
T Consensus 14 elqalekelaqlekelqawn 33 (80)
T 2lq4_p 14 ELQALEKELAQLEKELQAWN 33 (80)
T ss_dssp TTHHHHTTHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 56778888888887776543
No 184
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=45.23 E-value=15 Score=31.63 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc
Q 037836 24 LAKVQVLEREISFLEEELKTVD 45 (163)
Q Consensus 24 ~Aelq~LeqEI~fLEEEL~~LE 45 (163)
+.++..|+++|..||+|+++|+
T Consensus 16 ~~~~~~l~~~~~~~~~~~~~~~ 37 (403)
T 4etp_A 16 KEKIAALKEKIKDTELGMKELN 37 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 185
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=45.15 E-value=4.5 Score=30.14 Aligned_cols=25 Identities=16% Similarity=0.345 Sum_probs=16.5
Q ss_pred hHhHHHHHHHHHHHHHHHHHHhhhc
Q 037836 21 RRELAKVQVLEREISFLEEELKTVD 45 (163)
Q Consensus 21 hR~~Aelq~LeqEI~fLEEEL~~LE 45 (163)
-|.++++..||.|+..|+.|++.|.
T Consensus 54 ~rk~~~~~~LE~e~~~L~~e~e~L~ 78 (107)
T 3a5t_A 54 VKRVTQKEELEKQKAELQQEVEKLA 78 (107)
T ss_dssp HHHHHHHHHHHHHHTTTSSTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677777777777776666654
No 186
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=45.10 E-value=18 Score=24.99 Aligned_cols=21 Identities=14% Similarity=0.262 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHhhhccc
Q 037836 27 VQVLEREISFLEEELKTVDRF 47 (163)
Q Consensus 27 lq~LeqEI~fLEEEL~~LE~~ 47 (163)
.+.|++++..|++++++|+.+
T Consensus 77 ~~~l~~~~~~l~~~i~~l~~~ 97 (109)
T 1r8d_A 77 KAALQSQKEILMKKKQRMDEM 97 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 567888899999998888765
No 187
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=44.91 E-value=10 Score=24.73 Aligned_cols=20 Identities=0% Similarity=0.134 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHhhhc
Q 037836 26 KVQVLEREISFLEEELKTVD 45 (163)
Q Consensus 26 elq~LeqEI~fLEEEL~~LE 45 (163)
=|+++.+++.-|.+|.++|+
T Consensus 28 FLd~v~~~~~~l~~e~~~L~ 47 (57)
T 2wuj_A 28 FLAQVRKDYEIVLRKKTELE 47 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666654
No 188
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=44.28 E-value=9.8 Score=32.88 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc
Q 037836 24 LAKVQVLEREISFLEEELKTVD 45 (163)
Q Consensus 24 ~Aelq~LeqEI~fLEEEL~~LE 45 (163)
..||+.|++|+..||+++++++
T Consensus 9 ~~~~~~l~~~~~~l~~~~~~~~ 30 (403)
T 4etp_A 9 KEKIAALKEKIAALKEKIKDTE 30 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444
No 189
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=44.25 E-value=22 Score=26.23 Aligned_cols=25 Identities=16% Similarity=0.073 Sum_probs=15.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhhcc
Q 037836 22 RELAKVQVLEREISFLEEELKTVDR 46 (163)
Q Consensus 22 R~~Aelq~LeqEI~fLEEEL~~LE~ 46 (163)
-+..+++.|+++|..|++-++.|+.
T Consensus 99 ~l~~~~~~l~~~i~~L~~~~~~L~~ 123 (148)
T 3gpv_A 99 LMKQQEANVLQLIQDTEKNLKKIQQ 123 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677777777666666543
No 190
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=44.13 E-value=16 Score=22.98 Aligned_cols=27 Identities=26% Similarity=0.357 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcccCc
Q 037836 23 ELAKVQVLEREISFLEEELKTVDRFHP 49 (163)
Q Consensus 23 ~~Aelq~LeqEI~fLEEEL~~LE~~~p 49 (163)
+-++|..|.++-..||.|...|.++-.
T Consensus 6 LE~kVEeLl~~~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 6 LEAEVEEIESEVWHLENEVARLEKENA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 345666777777777777776665543
No 191
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=43.99 E-value=26 Score=22.02 Aligned_cols=23 Identities=30% Similarity=0.286 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhc
Q 037836 23 ELAKVQVLEREISFLEEELKTVD 45 (163)
Q Consensus 23 ~~Aelq~LeqEI~fLEEEL~~LE 45 (163)
+..+...||+|+.-|++.|.+-|
T Consensus 13 Ll~~~~~Le~EV~RL~~ll~~~e 35 (36)
T 1kd8_A 13 IESEVWHLENEVARLEKENAECE 35 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHhcccc
Confidence 45667788888888888887654
No 192
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=43.89 E-value=21 Score=25.16 Aligned_cols=17 Identities=12% Similarity=0.321 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHhhhcc
Q 037836 30 LEREISFLEEELKTVDR 46 (163)
Q Consensus 30 LeqEI~fLEEEL~~LE~ 46 (163)
|.++|..|+.|+..|-|
T Consensus 25 Lq~Ql~~Lq~Ev~~LRG 41 (83)
T 2xdj_A 25 LQQQLSDNQSDIDSLRG 41 (83)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33444444444444433
No 193
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=43.88 E-value=18 Score=29.56 Aligned_cols=20 Identities=20% Similarity=0.436 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHhhhc
Q 037836 26 KVQVLEREISFLEEELKTVD 45 (163)
Q Consensus 26 elq~LeqEI~fLEEEL~~LE 45 (163)
+|+..++||.-|+++|.+|+
T Consensus 35 ql~~k~~ei~~L~~ql~sl~ 54 (190)
T 4emc_A 35 KLDTKATEIKQLQKQIDSLN 54 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555554
No 194
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=43.66 E-value=19 Score=25.67 Aligned_cols=24 Identities=25% Similarity=0.250 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcc
Q 037836 23 ELAKVQVLEREISFLEEELKTVDR 46 (163)
Q Consensus 23 ~~Aelq~LeqEI~fLEEEL~~LE~ 46 (163)
+.++|+.|++|=.-|.+||+.||+
T Consensus 9 l~~eL~~l~~eE~~L~~eL~~lEk 32 (96)
T 3q8t_A 9 LQRELKELALEEERLIQELEDVEK 32 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555554
No 195
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=43.54 E-value=16 Score=25.62 Aligned_cols=21 Identities=33% Similarity=0.566 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHhhhcccC
Q 037836 28 QVLEREISFLEEELKTVDRFH 48 (163)
Q Consensus 28 q~LeqEI~fLEEEL~~LE~~~ 48 (163)
..||.+|..|+|||..|-+++
T Consensus 66 ~dLE~kvesL~eEl~fLkk~h 86 (86)
T 3swk_A 66 LDLERKVESLQEEIAFLKKLH 86 (86)
T ss_dssp HHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHhhcC
Confidence 357888888999988876543
No 196
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=43.25 E-value=21 Score=26.73 Aligned_cols=43 Identities=16% Similarity=0.233 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHhhhc--------ccCchhhhhHHHHHh----hhhcCCCC
Q 037836 26 KVQVLEREISFLEEELKTVD--------RFHPASRSCKEVADF----VVAKSDPL 68 (163)
Q Consensus 26 elq~LeqEI~fLEEEL~~LE--------~~~paS~~CKEv~~~----Ves~pDPL 68 (163)
+|+.|++||.-|+..++.|| ++..+-.-|+|..+. |....||.
T Consensus 19 ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIEiLcQe~~~~~~e~~~~~~~~~ 73 (106)
T 4e61_A 19 TIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDIEILVHTTQDLINEGVYKFNDET 73 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchh
Confidence 44455555555555555555 344556678887765 33445654
No 197
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=43.10 E-value=31 Score=31.05 Aligned_cols=45 Identities=13% Similarity=0.179 Sum_probs=31.9
Q ss_pred HHH-HHHHHHHHHHHHHHHhhhcccCchhhhhHHHHHhhhhcCCCCcccccC
Q 037836 24 LAK-VQVLEREISFLEEELKTVDRFHPASRSCKEVADFVVAKSDPLIPVNRK 74 (163)
Q Consensus 24 ~Ae-lq~LeqEI~fLEEEL~~LE~~~paS~~CKEv~~~Ves~pDPLLP~t~g 74 (163)
.++ ++.|..||.-||++++++|. --.+++..|-..+||-.|+.+.
T Consensus 109 ~~~~~~~l~~~i~~le~~~~~~~~------~~~~~l~~iPN~~~~~vP~g~~ 154 (484)
T 3lss_A 109 LKQLSKDLSDQVAGLAKEAQQLEE------ERDKLMLNVGNILHESVPIAQD 154 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHTTCCCCCCTTSCCCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHhCCCCCCccCCCCCC
Confidence 455 66777777777777777663 4467777888888888887643
No 198
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=42.65 E-value=27 Score=25.28 Aligned_cols=21 Identities=19% Similarity=0.273 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhc
Q 037836 25 AKVQVLEREISFLEEELKTVD 45 (163)
Q Consensus 25 Aelq~LeqEI~fLEEEL~~LE 45 (163)
.++..||.|+..|+-|++.|.
T Consensus 48 ~q~~~LE~e~~~L~~e~~~L~ 68 (90)
T 2wt7_B 48 QQKHHLENEKTQLIQQVEQLK 68 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666665554
No 199
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=42.64 E-value=27 Score=24.03 Aligned_cols=22 Identities=14% Similarity=0.071 Sum_probs=10.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhhh
Q 037836 23 ELAKVQVLEREISFLEEELKTV 44 (163)
Q Consensus 23 ~~Aelq~LeqEI~fLEEEL~~L 44 (163)
++.+.++|++|+..|+.|.++|
T Consensus 52 L~~~~~~l~~e~~~L~~e~~~L 73 (80)
T 1nlw_A 52 LEDSDRKAVHQIDQLQREQRHL 73 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555554444
No 200
>3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana}
Probab=42.51 E-value=18 Score=29.11 Aligned_cols=44 Identities=18% Similarity=0.375 Sum_probs=21.2
Q ss_pred HHHHHhhhccc--CchhhhhHHHHHhhhhcCCCCcccccCCCchhhHHHHHh
Q 037836 37 LEEELKTVDRF--HPASRSCKEVADFVVAKSDPLIPVNRKNRRSCRFWKWLC 86 (163)
Q Consensus 37 LEEEL~~LE~~--~paS~~CKEv~~~Ves~pDPLLP~t~g~~~s~~~~rW~~ 86 (163)
|+|.|++||.. .+.+.--+++++|+++. +...+|...++.+|--
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~------~~~~~r~~~~~~~~~~ 302 (305)
T 3t57_A 257 FEERLTELEQDQELYSVPAVSAMLQSIRDS------FTESRRGICKFRQWLD 302 (305)
T ss_dssp SHHHHHHHHHCHHHHTSHHHHHHHHHHHHT------TSTTCCCBCC------
T ss_pred HHHHHHHHHhhcccCCCHHHHHHHHHHHhc------cccCcCCCcCcccccc
Confidence 56777777654 23333458899998742 0112333455666654
No 201
>2nov_A DNA topoisomerase 4 subunit A; protein, PARC, TOPO IV, GRAM-positive bacteria, quinolone target, DNA binding, DNA cleavage; HET: DNA; 2.67A {Streptococcus pneumoniae} PDB: 3foe_A* 3fof_A* 3k9f_A* 3ksa_A* 3ksb_A* 3ltn_A* 3rad_A* 3rae_A* 3raf_A*
Probab=42.23 E-value=26 Score=31.95 Aligned_cols=44 Identities=20% Similarity=0.204 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccc--Cch---hhhhHHHHHhhhhcCCC
Q 037836 24 LAKVQVLEREISFLEEELKTVDRF--HPA---SRSCKEVADFVVAKSDP 67 (163)
Q Consensus 24 ~Aelq~LeqEI~fLEEEL~~LE~~--~pa---S~~CKEv~~~Ves~pDP 67 (163)
..++++|++|+..|++|+++|+.+ .+. ...=+|+.+..+.-.||
T Consensus 429 ~~e~~kl~~E~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~i~~~y~~~ 477 (496)
T 2nov_A 429 NTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP 477 (496)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHCCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 347788888888888888888877 332 33567888877777775
No 202
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=42.16 E-value=12 Score=27.58 Aligned_cols=30 Identities=17% Similarity=0.159 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHhhhcccCchhhhhHH
Q 037836 27 VQVLEREISFLEEELKTVDRFHPASRSCKE 56 (163)
Q Consensus 27 lq~LeqEI~fLEEEL~~LE~~~paS~~CKE 56 (163)
|+.|++++..|++|.+.++.++.....-+.
T Consensus 76 Ik~Lq~~~~~l~~~~~~~~~l~~~n~~L~~ 105 (118)
T 4ati_A 76 IRKLQREQQRAKDLENRQKKLEHANRHLLL 105 (118)
T ss_dssp HHHHHHHHHHHHHHCC--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777788787776666666655554443
No 203
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=42.16 E-value=21 Score=30.37 Aligned_cols=14 Identities=14% Similarity=0.112 Sum_probs=6.3
Q ss_pred hhHHHHHhhhhcCC
Q 037836 53 SCKEVADFVVAKSD 66 (163)
Q Consensus 53 ~CKEv~~~Ves~pD 66 (163)
--|++.+.+..+||
T Consensus 573 ~~~~l~~~~~~~~~ 586 (597)
T 3oja_B 573 KVKQLEAKKNRNPD 586 (597)
T ss_dssp HHHHHHHTTC----
T ss_pred HHHHHHHHhcCCCc
Confidence 45666666666666
No 204
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=42.02 E-value=18 Score=23.81 Aligned_cols=34 Identities=26% Similarity=0.357 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHhhhcccCchhhhhHHHHHhhhh
Q 037836 27 VQVLEREISFLEEELKTVDRFHPASRSCKEVADFVVA 63 (163)
Q Consensus 27 lq~LeqEI~fLEEEL~~LE~~~paS~~CKEv~~~Ves 63 (163)
|.+||+|+..||.|-+.|.+-. --=|+++.++|.
T Consensus 5 vaqlenevaslenenetlkkkn---lhkkdliaylek 38 (49)
T 3he5_A 5 VAQLENEVASLENENETLKKKN---LHKKDLIAYLEK 38 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccHHHHHhc---ccHHHHHHHHHH
Confidence 6789999999998877665422 122666666653
No 205
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=41.81 E-value=16 Score=26.71 Aligned_cols=24 Identities=21% Similarity=0.320 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccc
Q 037836 24 LAKVQVLEREISFLEEELKTVDRF 47 (163)
Q Consensus 24 ~Aelq~LeqEI~fLEEEL~~LE~~ 47 (163)
..||..|.+.|+.|+-||++|.++
T Consensus 35 k~Ei~elrr~iq~L~~el~~l~~~ 58 (129)
T 3tnu_B 35 KHEISEMNRMIQRLRAEIDNVKKQ 58 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhH
Confidence 456777778888888877777665
No 206
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=41.76 E-value=15 Score=29.79 Aligned_cols=28 Identities=14% Similarity=0.190 Sum_probs=15.9
Q ss_pred CCCCchhhhHhHHHHHHHHHHHHHHHHHHhhhc
Q 037836 13 EYPDLYGKRRELAKVQVLEREISFLEEELKTVD 45 (163)
Q Consensus 13 ~~pD~~GKhR~~Aelq~LeqEI~fLEEEL~~LE 45 (163)
+..++.+++ +++|.++|+-||++|.+|-
T Consensus 65 ~aVSL~erQ-----~~~LR~r~~~Le~~L~~Li 92 (252)
T 3e98_A 65 DAVSLVERQ-----VRLLRERNIEMRHRLSQLM 92 (252)
T ss_dssp --CHHHHHH-----HHHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHH-----HHHHHHHHHHHHHHHHHHH
Confidence 445555443 5566667777777776653
No 207
>3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} SCOP: b.81.1.0 PDB: 3i3a_A* 3i3x_A*
Probab=41.35 E-value=17 Score=28.23 Aligned_cols=29 Identities=10% Similarity=0.077 Sum_probs=22.1
Q ss_pred HHHHHHhhhcccCchhhhhHHHHHhhhhc
Q 037836 36 FLEEELKTVDRFHPASRSCKEVADFVVAK 64 (163)
Q Consensus 36 fLEEEL~~LE~~~paS~~CKEv~~~Ves~ 64 (163)
-|+|.|++||..-+.+.--+++++|+++.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 251 (259)
T 3hsq_A 223 STRKALDELEASGNLIEQVKYIIKFFRDS 251 (259)
T ss_dssp CHHHHHHHHHTTCCCCHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHhC
Confidence 36888888888766666678999999754
No 208
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=41.25 E-value=13 Score=26.82 Aligned_cols=23 Identities=17% Similarity=0.055 Sum_probs=17.4
Q ss_pred hHhHHHHHHHHHHHHHHHHHHhh
Q 037836 21 RRELAKVQVLEREISFLEEELKT 43 (163)
Q Consensus 21 hR~~Aelq~LeqEI~fLEEEL~~ 43 (163)
..+++++++|++||.-++.||.+
T Consensus 11 ~~L~~q~~~L~~ei~~~~a~L~~ 33 (85)
T 3viq_B 11 HLLEQQKEQLESSLQDALAKLKN 33 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 35677888888888888877764
No 209
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=41.19 E-value=11 Score=27.09 Aligned_cols=27 Identities=37% Similarity=0.430 Sum_probs=20.9
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHhhhcc
Q 037836 20 KRRELAKVQVLEREISFLEEELKTVDR 46 (163)
Q Consensus 20 KhR~~Aelq~LeqEI~fLEEEL~~LE~ 46 (163)
|.-+.|+|..|..|...|++||+++..
T Consensus 32 k~DLI~rvdELt~E~e~l~~El~s~~~ 58 (77)
T 2w83_C 32 KNDLIAKVDELTCEKDVLQGELEAVKQ 58 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 445678888888888888888887753
No 210
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=40.95 E-value=29 Score=25.30 Aligned_cols=25 Identities=12% Similarity=0.304 Sum_probs=12.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhhcc
Q 037836 22 RELAKVQVLEREISFLEEELKTVDR 46 (163)
Q Consensus 22 R~~Aelq~LeqEI~fLEEEL~~LE~ 46 (163)
+++++|+.|......||..|.++|.
T Consensus 47 ~L~~el~~l~~~~~~LE~~l~e~e~ 71 (129)
T 3tnu_B 47 RLRAEIDNVKKQCANLQNAIADAEQ 71 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3444555554444555555544443
No 211
>2rbd_A BH2358 protein; putative spore coat protein, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE PG4; 1.54A {Bacillus halodurans c-125}
Probab=40.86 E-value=31 Score=25.56 Aligned_cols=26 Identities=23% Similarity=0.197 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcccCc
Q 037836 23 ELAKVQVLEREISFLEEELKTVDRFHP 49 (163)
Q Consensus 23 ~~Aelq~LeqEI~fLEEEL~~LE~~~p 49 (163)
++..++.++++|..||+.|+. ||+..
T Consensus 52 L~~~~~~~~~~i~~l~~~~~~-~g~p~ 77 (171)
T 2rbd_A 52 IDEAIQAMQDENHQLEELLRS-NGVGL 77 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-TTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHH-CCCCC
Confidence 445577778888888877754 66653
No 212
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=40.81 E-value=24 Score=22.74 Aligned_cols=27 Identities=19% Similarity=0.517 Sum_probs=22.9
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHhhhcc
Q 037836 20 KRRELAKVQVLEREISFLEEELKTVDR 46 (163)
Q Consensus 20 KhR~~Aelq~LeqEI~fLEEEL~~LE~ 46 (163)
|.-+..+|+++++||.--|+.+.+|.+
T Consensus 4 k~~l~qkI~kVdrEI~Kte~kI~~lqk 30 (42)
T 2l5g_B 4 KEELIQNMDRVDREITMVEQQISKLKK 30 (42)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455778899999999999999988765
No 213
>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus} SCOP: a.2.1.1 d.26.1.2 PDB: 2eul_A 3aoh_X* 3aoi_X* 2etn_A
Probab=40.72 E-value=28 Score=26.12 Aligned_cols=26 Identities=19% Similarity=0.178 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccCch
Q 037836 25 AKVQVLEREISFLEEELKTVDRFHPA 50 (163)
Q Consensus 25 Aelq~LeqEI~fLEEEL~~LE~~~pa 50 (163)
.+..+||+.|.+|+++|+..+-+++.
T Consensus 53 ~~q~~~e~ri~~L~~~L~~a~vi~~~ 78 (156)
T 2f23_A 53 QEKARIEARIDSLEDILSRAVILEEG 78 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHEEECCTT
T ss_pred HHHHHHHHHHHHHHHHHHhCcccCCC
Confidence 34556677888888888887776664
No 214
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=40.60 E-value=28 Score=25.63 Aligned_cols=19 Identities=21% Similarity=0.359 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 037836 26 KVQVLEREISFLEEELKTV 44 (163)
Q Consensus 26 elq~LeqEI~fLEEEL~~L 44 (163)
+++.|+++|..|++-++.|
T Consensus 89 ~~~~l~~~i~~L~~~~~~L 107 (142)
T 3gp4_A 89 QRIELKNRIDVMQEALDRL 107 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433
No 215
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=40.52 E-value=30 Score=25.00 Aligned_cols=24 Identities=13% Similarity=0.176 Sum_probs=12.7
Q ss_pred hHhHHHHHHHHHHHHHHHHHHhhh
Q 037836 21 RRELAKVQVLEREISFLEEELKTV 44 (163)
Q Consensus 21 hR~~Aelq~LeqEI~fLEEEL~~L 44 (163)
|-+..++..|.+|+..|.+|+..+
T Consensus 51 ~~LE~e~~~L~~e~~~L~~e~~~~ 74 (90)
T 2wt7_B 51 HHLENEKTQLIQQVEQLKQEVSRL 74 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555544
No 216
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=40.10 E-value=16 Score=27.82 Aligned_cols=22 Identities=14% Similarity=0.389 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhcc
Q 037836 25 AKVQVLEREISFLEEELKTVDR 46 (163)
Q Consensus 25 Aelq~LeqEI~fLEEEL~~LE~ 46 (163)
.|+++|++|+..|+++|+.+..
T Consensus 2 ~e~~~l~~~~~~l~~~~~~~~~ 23 (340)
T 1got_B 2 SELDQLRQEAEQLKNQIRDARK 23 (340)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHh
Confidence 4677777777777777776543
No 217
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=40.09 E-value=26 Score=25.81 Aligned_cols=26 Identities=19% Similarity=0.096 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcccC
Q 037836 23 ELAKVQVLEREISFLEEELKTVDRFH 48 (163)
Q Consensus 23 ~~Aelq~LeqEI~fLEEEL~~LE~~~ 48 (163)
..-+|.+|++||.-|.+-|..||.-+
T Consensus 73 ~~~~~e~Lq~E~erLr~~v~~lEeg~ 98 (100)
T 1go4_E 73 LREDHSQLQAECERLRGLLRAMERGG 98 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 34567777777777777777777633
No 218
>3bs5_A Protein aveugle; sterIle alpha motif, SAM domain, SAM domain dimer, SAM domain complex, cytoplasm, membrane; 2.00A {Drosophila melanogaster}
Probab=39.97 E-value=27 Score=24.91 Aligned_cols=31 Identities=10% Similarity=0.179 Sum_probs=21.5
Q ss_pred CCchhhhHhHHHHHHHHHHHHHHHHHHhhhccc
Q 037836 15 PDLYGKRRELAKVQVLEREISFLEEELKTVDRF 47 (163)
Q Consensus 15 pD~~GKhR~~Aelq~LeqEI~fLEEEL~~LE~~ 47 (163)
.++.=|.|++.+|+.|.++... .|+++||+.
T Consensus 73 ~~~GhR~kIl~~I~~Lr~~~~~--~~~~~l~~~ 103 (106)
T 3bs5_A 73 TDNRDREAIWREIVKQRLKTDI--MEIRDMERL 103 (106)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhhh--HHHHHHHhc
Confidence 3444577889999999876644 367777765
No 219
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=39.77 E-value=26 Score=28.51 Aligned_cols=27 Identities=19% Similarity=0.288 Sum_probs=22.5
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHhhhcc
Q 037836 20 KRRELAKVQVLEREISFLEEELKTVDR 46 (163)
Q Consensus 20 KhR~~Aelq~LeqEI~fLEEEL~~LE~ 46 (163)
.+.++.+|+.|+++|..+++||+++-.
T Consensus 228 l~~l~~~i~~l~~~l~~~~~~l~~~~~ 254 (357)
T 3rrk_A 228 AARMKERARLAPEELVGIREEVARLSR 254 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888999999999999999888644
No 220
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=39.74 E-value=24 Score=30.26 Aligned_cols=26 Identities=15% Similarity=0.141 Sum_probs=17.1
Q ss_pred hHhHHHHHHHHHHHHHHHHHHhhhcc
Q 037836 21 RRELAKVQVLEREISFLEEELKTVDR 46 (163)
Q Consensus 21 hR~~Aelq~LeqEI~fLEEEL~~LE~ 46 (163)
+.+++.|+.|+.+|..|++.|.+||.
T Consensus 21 ~~L~~~l~~~~~ki~~L~~~i~~l~~ 46 (319)
T 1fzc_C 21 RYLQEIYNSNNQKIVNLKEKVAQLEA 46 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667777777777776666653
No 221
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=39.65 E-value=21 Score=28.96 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccc
Q 037836 24 LAKVQVLEREISFLEEELKTVDRF 47 (163)
Q Consensus 24 ~Aelq~LeqEI~fLEEEL~~LE~~ 47 (163)
.+++++..+++..|++|.++|..+
T Consensus 35 ~~~l~~~~~~~~~l~~En~rLr~l 58 (255)
T 2j5u_A 35 LEELAQLESEVADLKKENKDLKES 58 (255)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555666566655543
No 222
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=39.57 E-value=24 Score=25.73 Aligned_cols=27 Identities=37% Similarity=0.546 Sum_probs=20.9
Q ss_pred hhHhHHHHHHHHHHHHHH----HHHHhhhcc
Q 037836 20 KRRELAKVQVLEREISFL----EEELKTVDR 46 (163)
Q Consensus 20 KhR~~Aelq~LeqEI~fL----EEEL~~LE~ 46 (163)
|--+.++|+.|..||.|| ||||++|.+
T Consensus 85 r~dLE~~iesL~eEl~FLKk~heeEl~eLq~ 115 (119)
T 3ol1_A 85 RLDLERKVESLQEEIAFLKKLHEEEIQELQA 115 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334677899999999998 578888764
No 223
>4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis}
Probab=39.36 E-value=11 Score=29.95 Aligned_cols=28 Identities=29% Similarity=0.400 Sum_probs=17.7
Q ss_pred HHHHHhhhcccCchhh----hhHHHHHhhhhc
Q 037836 37 LEEELKTVDRFHPASR----SCKEVADFVVAK 64 (163)
Q Consensus 37 LEEEL~~LE~~~paS~----~CKEv~~~Ves~ 64 (163)
|+|.|++|+..-+.+. --+++++|+++.
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 277 (283)
T 4eqy_A 246 LEEAKVQLSELAQAGGDGDAAVKALVDFVESS 277 (283)
T ss_dssp HHHHHHHHHHHTTSSSTTHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhcccCCchHHHHHHHHHHHhhc
Confidence 5666666665443333 468899998643
No 224
>3bmb_A Regulator of nucleoside diphosphate kinase; RNA polymerase, elongation factor, anti-GRE factor, RNA binding protein; 1.91A {Escherichia coli}
Probab=39.14 E-value=15 Score=27.01 Aligned_cols=41 Identities=15% Similarity=0.063 Sum_probs=30.1
Q ss_pred CCCCCCchhhhHhHHHHHHHH----HHHHHHHHHHhhhcccCchh
Q 037836 11 PPEYPDLYGKRRELAKVQVLE----REISFLEEELKTVDRFHPAS 51 (163)
Q Consensus 11 PP~~pD~~GKhR~~Aelq~Le----qEI~fLEEEL~~LE~~~paS 51 (163)
|+-+--..|-.|+.++|..|. ..|.+||++|+..+=+++..
T Consensus 4 ~~i~iT~~d~~rL~~~l~~~~~~~~~~i~~L~~~L~~A~vi~~~~ 48 (136)
T 3bmb_A 4 PTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEE 48 (136)
T ss_dssp CCCEEEHHHHHHHHHHHHSGGGTTCHHHHHHHHHHHTCEEECGGG
T ss_pred CceEECHHHHHHHHHHHHhhhhcCcHHHHHHHHHHhccEEECCcc
Confidence 334445567889999888775 35899999999888777654
No 225
>2yf2_A C4B binding protein; immune system, complement system; 2.24A {Gallus gallus}
Probab=38.93 E-value=34 Score=23.66 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=18.2
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHHH
Q 037836 18 YGKRRELAKVQVLEREISFLEEEL 41 (163)
Q Consensus 18 ~GKhR~~Aelq~LeqEI~fLEEEL 41 (163)
.--+++-.|||+|+.|++-|-.|.
T Consensus 34 LEi~KL~LEIQKL~~EL~glskef 57 (65)
T 2yf2_A 34 LEIRKLFLEIQKLKVELQGLSKEF 57 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcchhHHH
Confidence 345677888999999888777664
No 226
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=38.88 E-value=32 Score=25.16 Aligned_cols=25 Identities=16% Similarity=0.023 Sum_probs=12.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhhcc
Q 037836 22 RELAKVQVLEREISFLEEELKTVDR 46 (163)
Q Consensus 22 R~~Aelq~LeqEI~fLEEEL~~LE~ 46 (163)
+++++|+.|......||..|.++|.
T Consensus 49 ~L~~el~~l~~~~~sLE~~l~e~e~ 73 (131)
T 3tnu_A 49 NLEIELQSQLSMKASLENSLEETKG 73 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3444555444444455555544443
No 227
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=38.77 E-value=12 Score=28.12 Aligned_cols=20 Identities=10% Similarity=0.094 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHhhhcc
Q 037836 27 VQVLEREISFLEEELKTVDR 46 (163)
Q Consensus 27 lq~LeqEI~fLEEEL~~LE~ 46 (163)
.++|..+++.+++||++||+
T Consensus 170 ~~~l~~~~~~~~~~~~~l~~ 189 (203)
T 3qks_A 170 YKKLSELKKTINNRIKEYRD 189 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443
No 228
>1nog_A Conserved hypothetical protein TA0546; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics; 1.55A {Thermoplasma acidophilum} SCOP: a.25.2.2
Probab=38.72 E-value=20 Score=28.18 Aligned_cols=23 Identities=13% Similarity=0.277 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcc
Q 037836 24 LAKVQVLEREISFLEEELKTVDR 46 (163)
Q Consensus 24 ~Aelq~LeqEI~fLEEEL~~LE~ 46 (163)
...|++||++|..+.++|..|.+
T Consensus 80 ~~~v~~LE~~id~~~~~l~~l~~ 102 (177)
T 1nog_A 80 REMIDYLEARVKEMKAEIGKIEL 102 (177)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCS
T ss_pred HHHHHHHHHHHHHHHhhCCCCCc
Confidence 38899999999999999988763
No 229
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=38.53 E-value=25 Score=26.64 Aligned_cols=13 Identities=15% Similarity=0.166 Sum_probs=7.4
Q ss_pred hhhhHhHHHHHHH
Q 037836 18 YGKRRELAKVQVL 30 (163)
Q Consensus 18 ~GKhR~~Aelq~L 30 (163)
.|..|+++||++|
T Consensus 9 ~g~~~L~~EL~~L 21 (158)
T 2p4v_A 9 EGYEKLKQELNYL 21 (158)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3555555555555
No 230
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=38.52 E-value=25 Score=23.87 Aligned_cols=17 Identities=24% Similarity=0.526 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHhhh
Q 037836 28 QVLEREISFLEEELKTV 44 (163)
Q Consensus 28 q~LeqEI~fLEEEL~~L 44 (163)
++|+|++.|++..=++|
T Consensus 29 ~~ldq~Ld~Ie~QQ~EL 45 (64)
T 3t97_C 29 KRLDQELDFILSQQKEL 45 (64)
T ss_dssp HHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555555544433333
No 231
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=38.42 E-value=56 Score=24.10 Aligned_cols=9 Identities=22% Similarity=0.080 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 037836 30 LEREISFLE 38 (163)
Q Consensus 30 LeqEI~fLE 38 (163)
|+++|.-|+
T Consensus 92 L~~~i~~l~ 100 (146)
T 3hh0_A 92 LLAEQERIA 100 (146)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 232
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=38.16 E-value=23 Score=26.90 Aligned_cols=25 Identities=8% Similarity=0.371 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCch
Q 037836 26 KVQVLEREISFLEEELKTVDRFHPA 50 (163)
Q Consensus 26 elq~LeqEI~fLEEEL~~LE~~~pa 50 (163)
++.++|+.|++|+++|+..+-+++.
T Consensus 54 ~q~~~e~rI~~L~~~L~~A~vid~~ 78 (158)
T 2p4v_A 54 RLREIDRRVRYLTKCMENLKIVDYS 78 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCEECCCC
T ss_pred HHHHHHHHHHHHHHHHhhCeecCCc
Confidence 4578899999999999888777664
No 233
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=38.15 E-value=39 Score=23.86 Aligned_cols=31 Identities=32% Similarity=0.556 Sum_probs=24.8
Q ss_pred CchhhhHhH-HHHHHHHHHHHHHHHHHhhhcc
Q 037836 16 DLYGKRREL-AKVQVLEREISFLEEELKTVDR 46 (163)
Q Consensus 16 D~~GKhR~~-Aelq~LeqEI~fLEEEL~~LE~ 46 (163)
++.|+|++. -.|..|||+=.|||.+|..+|.
T Consensus 32 nL~~mR~ivldRlA~lEqdE~~LE~~l~~i~~ 63 (72)
T 2xu6_A 32 NLRQKKEKLLGKIANIEQNQLMLEDNLKQIDD 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 456677665 4688999999999999998875
No 234
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=38.03 E-value=35 Score=24.37 Aligned_cols=24 Identities=13% Similarity=0.044 Sum_probs=15.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhhc
Q 037836 22 RELAKVQVLEREISFLEEELKTVD 45 (163)
Q Consensus 22 R~~Aelq~LeqEI~fLEEEL~~LE 45 (163)
|...+++.++..|..||+||.++.
T Consensus 34 ~~~~e~~~~q~~i~~lE~eL~~~r 57 (95)
T 3mov_A 34 LLAKEKDNSRRMLTDKEREMAEIR 57 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666677777777776653
No 235
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=37.92 E-value=26 Score=27.96 Aligned_cols=21 Identities=5% Similarity=0.026 Sum_probs=11.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHh
Q 037836 22 RELAKVQVLEREISFLEEELK 42 (163)
Q Consensus 22 R~~Aelq~LeqEI~fLEEEL~ 42 (163)
-++.||..++++|++||+++.
T Consensus 94 aL~kEie~~~~~i~~lE~eil 114 (256)
T 3na7_A 94 SLNIEEDIAKERSNQANREIE 114 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666655543
No 236
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=37.82 E-value=60 Score=21.36 Aligned_cols=37 Identities=14% Similarity=0.093 Sum_probs=28.7
Q ss_pred CCCCCCchhhhHhHHHHHHHHHHHHHHHHHHhhhccc
Q 037836 11 PPEYPDLYGKRRELAKVQVLEREISFLEEELKTVDRF 47 (163)
Q Consensus 11 PP~~pD~~GKhR~~Aelq~LeqEI~fLEEEL~~LE~~ 47 (163)
.|...|+-.-...+.+.+.|++||.-.+..++.|..+
T Consensus 29 ~~~~~d~~~v~~~l~~h~~l~~ei~~~~~~v~~v~~~ 65 (118)
T 3uul_A 29 DDISDDVEDVKEQFATHETFMMELSAHQSSVGSVLQA 65 (118)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677788888888889999999888888777543
No 237
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=37.81 E-value=32 Score=26.52 Aligned_cols=16 Identities=19% Similarity=0.314 Sum_probs=9.4
Q ss_pred HHHHHhhhhcCCCCcc
Q 037836 55 KEVADFVVAKSDPLIP 70 (163)
Q Consensus 55 KEv~~~Ves~pDPLLP 70 (163)
..|..|++.+.|=|.+
T Consensus 66 ~~l~~y~e~~r~elf~ 81 (171)
T 2p2u_A 66 DGVATFATLNKTEMFK 81 (171)
T ss_dssp HHHHHHHHHTHHHHCC
T ss_pred HHHHHHHHHhHHHhcC
Confidence 3456667777555544
No 238
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=37.64 E-value=16 Score=31.12 Aligned_cols=30 Identities=23% Similarity=0.281 Sum_probs=19.8
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHhhhcccC
Q 037836 19 GKRRELAKVQVLEREISFLEEELKTVDRFH 48 (163)
Q Consensus 19 GKhR~~Aelq~LeqEI~fLEEEL~~LE~~~ 48 (163)
+...+++++.+++.+|..|++|+++.|..-
T Consensus 450 ~~e~l~~e~~~~~~~i~~l~~~~~~~~~~l 479 (597)
T 3oja_B 450 GNEQLEAEVNELRAEVQQLTNEQIQQEQLL 479 (597)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334567788888888888888877766543
No 239
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=37.64 E-value=26 Score=28.21 Aligned_cols=19 Identities=26% Similarity=0.263 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 037836 25 AKVQVLEREISFLEEELKT 43 (163)
Q Consensus 25 Aelq~LeqEI~fLEEEL~~ 43 (163)
..|+.||++|.-|||||..
T Consensus 135 rtV~kLqkeiD~LEDeL~~ 153 (175)
T 3mud_A 135 DTTAKNEKSIDDLEEKVAH 153 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3578888899999988843
No 240
>3qao_A LMO0526 protein, MERR-like transcriptional regulator; structural genomics, the center for structural genomics of I diseases, csgid; 1.87A {Listeria monocytogenes}
Probab=37.63 E-value=33 Score=27.53 Aligned_cols=30 Identities=17% Similarity=0.098 Sum_probs=17.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhhcccCchh
Q 037836 22 RELAKVQVLEREISFLEEELKTVDRFHPAS 51 (163)
Q Consensus 22 R~~Aelq~LeqEI~fLEEEL~~LE~~~paS 51 (163)
.+.+++++|++.|..|++-|+.+++-...+
T Consensus 87 ~L~~~~~~L~~~~~~l~~~i~~~~~~~~~~ 116 (249)
T 3qao_A 87 LLIEKKQRIETMLATLDLTIKNEKGEITMT 116 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 344555666666666666666666644443
No 241
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=37.57 E-value=30 Score=28.78 Aligned_cols=38 Identities=13% Similarity=0.237 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCchhhhhHHHHHhhhh
Q 037836 26 KVQVLEREISFLEEELKTVDRFHPASRSCKEVADFVVA 63 (163)
Q Consensus 26 elq~LeqEI~fLEEEL~~LE~~~paS~~CKEv~~~Ves 63 (163)
|-+.|+++|.-|+||+..|.....-.+.--|++..+.+
T Consensus 116 EN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~la~ 153 (209)
T 2wvr_A 116 ENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQYMAE 153 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999997776655555555544443
No 242
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=37.26 E-value=29 Score=23.67 Aligned_cols=19 Identities=11% Similarity=0.200 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHhhhc
Q 037836 27 VQVLEREISFLEEELKTVD 45 (163)
Q Consensus 27 lq~LeqEI~fLEEEL~~LE 45 (163)
.++|+.++.-|+.+|+.|.
T Consensus 27 ~~~i~~~l~~L~~~v~~L~ 45 (103)
T 4i0x_B 27 KEFVTENLDQLESRAQKLV 45 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444443
No 243
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=37.03 E-value=32 Score=25.28 Aligned_cols=24 Identities=13% Similarity=0.261 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccC
Q 037836 25 AKVQVLEREISFLEEELKTVDRFH 48 (163)
Q Consensus 25 Aelq~LeqEI~fLEEEL~~LE~~~ 48 (163)
..++.|++++..|++++++|+.+.
T Consensus 81 ~~~~~L~~~~~~l~~~i~~L~~~~ 104 (142)
T 3gp4_A 81 ARAELLKKQRIELKNRIDVMQEAL 104 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777777776543
No 244
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=36.94 E-value=35 Score=24.28 Aligned_cols=23 Identities=17% Similarity=0.365 Sum_probs=11.3
Q ss_pred hHhHHHHHHHHHHHHHHHHHHhh
Q 037836 21 RRELAKVQVLEREISFLEEELKT 43 (163)
Q Consensus 21 hR~~Aelq~LeqEI~fLEEEL~~ 43 (163)
.+++++|..||+|=.-|..||+.
T Consensus 21 ~~L~~eL~~lEke~~~l~~el~~ 43 (96)
T 3q8t_A 21 ERLIQELEDVEKNRKVVAENLEK 43 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHH
Confidence 35556666555544444444433
No 245
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=36.93 E-value=33 Score=26.12 Aligned_cols=26 Identities=19% Similarity=0.310 Sum_probs=18.9
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHhhhc
Q 037836 20 KRRELAKVQVLEREISFLEEELKTVD 45 (163)
Q Consensus 20 KhR~~Aelq~LeqEI~fLEEEL~~LE 45 (163)
++.+..++..|+|||.-||.|.+.++
T Consensus 16 ~~~L~~~~r~Ldr~~~kle~~ekk~~ 41 (179)
T 2gd5_A 16 SLKIRKEMRVVDRQIRDIQREEEKVK 41 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677788888888887777664
No 246
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=36.79 E-value=32 Score=21.83 Aligned_cols=19 Identities=26% Similarity=0.389 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 037836 26 KVQVLEREISFLEEELKTV 44 (163)
Q Consensus 26 elq~LeqEI~fLEEEL~~L 44 (163)
+|.+|+.++..|+||-.+|
T Consensus 16 Qi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 16 QILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4677777777777776654
No 247
>3ku8_A GYRA14, DNA gyrase subunit A; alpha+beta, SH3 domain, topoisomerase, toxin-isomerase compl; HET: DNA; 1.93A {Escherichia coli} PDB: 4ely_A* 1x75_A* 3kua_A* 4elz_A*
Probab=36.67 E-value=13 Score=29.02 Aligned_cols=48 Identities=8% Similarity=0.079 Sum_probs=36.0
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHhhhcccCchhhhhHHHHHhhhhcCCC
Q 037836 20 KRRELAKVQVLEREISFLEEELKTVDRFHPASRSCKEVADFVVAKSDP 67 (163)
Q Consensus 20 KhR~~Aelq~LeqEI~fLEEEL~~LE~~~paS~~CKEv~~~Ves~pDP 67 (163)
-||...=..+.+-|++-.++-++=|||+-.|-..--||++.+-+.+||
T Consensus 15 ~hR~eVVtRRt~f~L~Ka~~R~HILEGL~iAl~nIDeVI~iIR~S~~~ 62 (156)
T 3ku8_A 15 VPRGSHMTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTP 62 (156)
T ss_dssp -------CCHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHCSSH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCH
Confidence 367766677777788888888888999999999999999999988887
No 248
>2pn0_A Prokaryotic transcription elongation factor GREA/GREB; structural genomics, APC6349, PSI-2, protein structure initiative; HET: MSE; 1.70A {Nitrosomonas europaea}
Probab=36.63 E-value=13 Score=27.67 Aligned_cols=42 Identities=19% Similarity=0.158 Sum_probs=30.0
Q ss_pred CCCCCCCchhhhHhHHHHHHHH----HHHHHHHHHHhhhcccCchh
Q 037836 10 SPPEYPDLYGKRRELAKVQVLE----REISFLEEELKTVDRFHPAS 51 (163)
Q Consensus 10 sPP~~pD~~GKhR~~Aelq~Le----qEI~fLEEEL~~LE~~~paS 51 (163)
.|+-|-.-.|-.|+.+++..|. ..|.+||++|+..+=+++..
T Consensus 6 ~~~i~iT~~d~~rL~~~l~~~~~~~~~~~~~L~~~L~~A~vi~~~~ 51 (141)
T 2pn0_A 6 KPKIMISSLDAERLEILLETLSQNAFPGRDDLEAELARAEVVDPEE 51 (141)
T ss_dssp CCCCEEEHHHHHHHHHHHHHTTTCCCTTHHHHHHHHHTCEEECGGG
T ss_pred CCceEECHHHHHHHHHHHHhhhhcChHHHHHHHHHHhcCEEECCcc
Confidence 3445556678888888888765 35888999988877666543
No 249
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=36.59 E-value=30 Score=29.72 Aligned_cols=18 Identities=17% Similarity=0.270 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 037836 27 VQVLEREISFLEEELKTV 44 (163)
Q Consensus 27 lq~LeqEI~fLEEEL~~L 44 (163)
|+.+++.|..|++.|.+|
T Consensus 35 l~~~~~~i~~l~~~i~~l 52 (323)
T 1lwu_C 35 WRVNQQFVTRLQQQLVDI 52 (323)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333344444333333
No 250
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=36.50 E-value=39 Score=23.46 Aligned_cols=24 Identities=13% Similarity=0.223 Sum_probs=12.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhhc
Q 037836 22 RELAKVQVLEREISFLEEELKTVD 45 (163)
Q Consensus 22 R~~Aelq~LeqEI~fLEEEL~~LE 45 (163)
+....|.+++.++.-||.-+..||
T Consensus 56 ~~E~qL~q~~~ql~~LE~q~~~iE 79 (79)
T 4abm_A 56 RYEKQLAQIDGTLSTIEFQREALE 79 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 334445555555555555555544
No 251
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=36.28 E-value=39 Score=24.20 Aligned_cols=21 Identities=33% Similarity=0.229 Sum_probs=7.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhh
Q 037836 23 ELAKVQVLEREISFLEEELKT 43 (163)
Q Consensus 23 ~~Aelq~LeqEI~fLEEEL~~ 43 (163)
.+...+++++.|+.|||||+.
T Consensus 56 ~~~~~~r~~~ri~elEeElkr 76 (77)
T 2w83_C 56 VKQAKLKLEEKNRELEEELRK 76 (77)
T ss_dssp HHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 344556677777777777764
No 252
>3p8c_E Probable protein brick1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=36.12 E-value=29 Score=24.55 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcc
Q 037836 23 ELAKVQVLEREISFLEEELKTVDR 46 (163)
Q Consensus 23 ~~Aelq~LeqEI~fLEEEL~~LE~ 46 (163)
+--+|+.||+.|.+||-.|.+-|+
T Consensus 50 ln~KL~~LEr~L~iLEAklss~~~ 73 (75)
T 3p8c_E 50 LNEKLTALERRIEYIEARVTKGET 73 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHhcccc
Confidence 345678888888888877766554
No 253
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=35.87 E-value=30 Score=26.12 Aligned_cols=23 Identities=13% Similarity=0.159 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhc
Q 037836 23 ELAKVQVLEREISFLEEELKTVD 45 (163)
Q Consensus 23 ~~Aelq~LeqEI~fLEEEL~~LE 45 (163)
+..++.+++++|.-++.+|.+||
T Consensus 5 l~~~~~~~~~~~~~~~~~~~~~~ 27 (192)
T 2gkw_A 5 LESQLSRHDQMLSVHDIRLADMD 27 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777778887777777665
No 254
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=35.62 E-value=28 Score=26.27 Aligned_cols=19 Identities=26% Similarity=0.319 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 037836 25 AKVQVLEREISFLEEELKT 43 (163)
Q Consensus 25 Aelq~LeqEI~fLEEEL~~ 43 (163)
++|+.+++||..|.+||.+
T Consensus 82 ~~l~~~~kE~~~lK~el~~ 100 (138)
T 3hnw_A 82 LDIENKDKEIYDLKHELIA 100 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433
No 255
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=35.62 E-value=12 Score=26.52 Aligned_cols=16 Identities=50% Similarity=0.721 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 037836 25 AKVQVLEREISFLEEE 40 (163)
Q Consensus 25 Aelq~LeqEI~fLEEE 40 (163)
++|..|+|-|+.||||
T Consensus 86 ~evasLnRriqllEEe 101 (101)
T 3u59_A 86 AEVASLNRRIQLVEEE 101 (101)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHccC
Confidence 3678888888888864
No 256
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=35.58 E-value=17 Score=25.97 Aligned_cols=43 Identities=14% Similarity=0.236 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccCchhhhhHHHHHhhhhcCCCCcccc
Q 037836 24 LAKVQVLEREISFLEEELKTVDRFHPASRSCKEVADFVVAKSDPLIPVN 72 (163)
Q Consensus 24 ~Aelq~LeqEI~fLEEEL~~LE~~~paS~~CKEv~~~Ves~pDPLLP~t 72 (163)
|+.|+.|+.||...|..|- .|..--|+-..-+|..||++.=.+
T Consensus 4 M~~l~eLq~e~~~~E~QL~------~A~QKLkdA~~~~e~DPDevNK~~ 46 (78)
T 2ic6_A 4 MSTLKEVQDNITLHEQRLV------TTRQKLKDAERAVELDPDDVNKST 46 (78)
T ss_dssp -CHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcCCCcHHHHHH
Confidence 4456666666666555543 344467888888999999865433
No 257
>1uk5_A BAG-family molecular chaperone regulator-3; triple helix bandle, CAIR-1, BIS, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.7.7.1
Probab=35.51 E-value=93 Score=23.24 Aligned_cols=26 Identities=35% Similarity=0.551 Sum_probs=19.5
Q ss_pred CCCCCCCCchhhhHhHHHHHHHHHHH
Q 037836 9 KSPPEYPDLYGKRRELAKVQVLEREI 34 (163)
Q Consensus 9 KsPP~~pD~~GKhR~~Aelq~LeqEI 34 (163)
-.||..|.+.--..++.+|+.|+.|+
T Consensus 21 ~~~~~~p~~~~I~~I~~eV~~L~~qV 46 (111)
T 1uk5_A 21 ETPPKHPGVLKVEAILEKVQGLEQAV 46 (111)
T ss_dssp SSCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 34567776777778888999998884
No 258
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=35.50 E-value=47 Score=20.95 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=17.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhhc
Q 037836 22 RELAKVQVLEREISFLEEELKTVD 45 (163)
Q Consensus 22 R~~Aelq~LeqEI~fLEEEL~~LE 45 (163)
.++.+|.+-+.||..|++|=++|-
T Consensus 11 kLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 11 KLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHH
Confidence 456677777888888888777664
No 259
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=35.41 E-value=22 Score=24.80 Aligned_cols=28 Identities=25% Similarity=0.318 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcccCch
Q 037836 23 ELAKVQVLEREISFLEEELKTVDRFHPA 50 (163)
Q Consensus 23 ~~Aelq~LeqEI~fLEEEL~~LE~~~pa 50 (163)
...+|+.+..+|.-|++.+++|..++..
T Consensus 10 F~~~v~~I~~~i~~i~~~v~~l~~~~~~ 37 (127)
T 1ez3_A 10 FFEQVEEIRGFIDKIAENVEEVKRKHSA 37 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777777777777777666653
No 260
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=35.32 E-value=30 Score=25.54 Aligned_cols=27 Identities=19% Similarity=0.247 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcccCc
Q 037836 23 ELAKVQVLEREISFLEEELKTVDRFHP 49 (163)
Q Consensus 23 ~~Aelq~LeqEI~fLEEEL~~LE~~~p 49 (163)
+.+++++|++-+..|++-|+.+++...
T Consensus 92 L~~~i~~l~~~l~~l~~~i~~~~~~~~ 118 (146)
T 3hh0_A 92 LLAEQERIAKVLSHMDEMTKKFQKEER 118 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 344455555555555555555544433
No 261
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=35.30 E-value=30 Score=25.78 Aligned_cols=23 Identities=22% Similarity=0.143 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhccc
Q 037836 25 AKVQVLEREISFLEEELKTVDRF 47 (163)
Q Consensus 25 Aelq~LeqEI~fLEEEL~~LE~~ 47 (163)
.+++.|++||..|++-++.|+.+
T Consensus 97 ~~~~~l~~qi~~L~~~~~~L~~~ 119 (154)
T 2zhg_A 97 QWREELDRRIHTLVALRDELDGC 119 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677777777777777776654
No 262
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=35.21 E-value=15 Score=26.21 Aligned_cols=16 Identities=44% Similarity=0.694 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 037836 25 AKVQVLEREISFLEEE 40 (163)
Q Consensus 25 Aelq~LeqEI~fLEEE 40 (163)
++|..|+|-|+.||||
T Consensus 86 ~ev~~L~RriqllEEe 101 (101)
T 3u1c_A 86 SEVASLNRRIQLVEEE 101 (101)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHccC
Confidence 3778888888888875
No 263
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=35.09 E-value=24 Score=33.46 Aligned_cols=30 Identities=17% Similarity=-0.003 Sum_probs=23.7
Q ss_pred chhhhHhHHHHHHHHHHHHHHHHHHhhhcc
Q 037836 17 LYGKRRELAKVQVLEREISFLEEELKTVDR 46 (163)
Q Consensus 17 ~~GKhR~~Aelq~LeqEI~fLEEEL~~LE~ 46 (163)
+-|.--..+|+++|++|+..|+.||+.++|
T Consensus 792 ~~~~~d~~~~~~rl~k~~~~~~~~~~~~~~ 821 (862)
T 1gax_A 792 LEGLLDVEEWRRRQEKRLKELLALAERSQR 821 (862)
T ss_dssp CCSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eccccCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445678889999999999999988886
No 264
>3tq7_B Microtubule-associated protein RP/EB family membe; CAP-Gly domain, protein-protein interaction, microtubule BIN cytoskeleton, protein binding; 2.30A {Homo sapiens} SCOP: a.245.1.1
Probab=34.96 E-value=11 Score=26.96 Aligned_cols=16 Identities=6% Similarity=0.150 Sum_probs=6.3
Q ss_pred hhHHHHHhhhhcCCCC
Q 037836 53 SCKEVADFVVAKSDPL 68 (163)
Q Consensus 53 ~CKEv~~~Ves~pDPL 68 (163)
.++.|.+.+=+.-|=+
T Consensus 48 ~~~~I~~ILYaTeegf 63 (82)
T 3tq7_B 48 VISGIIGILYATEEGF 63 (82)
T ss_dssp HHHHHHHHHTCCC---
T ss_pred HHHHHHHHHhccccCC
Confidence 4455555444444433
No 265
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=34.96 E-value=35 Score=21.05 Aligned_cols=19 Identities=37% Similarity=0.511 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 037836 26 KVQVLEREISFLEEELKTV 44 (163)
Q Consensus 26 elq~LeqEI~fLEEEL~~L 44 (163)
+|..||++-+.||.+|+.|
T Consensus 21 kVR~LE~~N~~Le~~i~~l 39 (39)
T 1gk7_A 21 KVRFLEQQNKILLAELEQL 39 (39)
T ss_dssp HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 5666777777777777653
No 266
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=34.91 E-value=1.1e+02 Score=22.76 Aligned_cols=49 Identities=10% Similarity=-0.026 Sum_probs=32.7
Q ss_pred CCchhhhHhHHHHHHHHHHHHHHHHHHh------hhcccCchhhhhHHHHHhhhhc
Q 037836 15 PDLYGKRRELAKVQVLEREISFLEEELK------TVDRFHPASRSCKEVADFVVAK 64 (163)
Q Consensus 15 pD~~GKhR~~Aelq~LeqEI~fLEEEL~------~LE~~~paS~~CKEv~~~Ves~ 64 (163)
-|...+..++..|+.+.++..-+.+..+ .+++.++ ..+-++|.+.|+..
T Consensus 181 ld~~~~~~i~~~l~~~~~~~~~v~~~~~~~~~~~~id~~~~-~~v~~~i~~~l~~~ 235 (246)
T 2bbw_A 181 QEDDKPEAVAARLRQYKDVAKPVIELYKSRGVLHQFSGTET-NKIWPYVYTLFSNK 235 (246)
T ss_dssp CGGGSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHHHHHHHTT
T ss_pred CCCCcHHHHHHHHHHHHHhHHHHHHHHhhcCcEEEECCCCc-HHHHHHHHHHHHhh
Confidence 3566777788888888877765554443 4667666 66777777777654
No 267
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=34.88 E-value=41 Score=24.60 Aligned_cols=38 Identities=21% Similarity=0.308 Sum_probs=22.5
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHhhhcc-cCchhhhhHHH
Q 037836 20 KRRELAKVQVLEREISFLEEELKTVDR-FHPASRSCKEV 57 (163)
Q Consensus 20 KhR~~Aelq~LeqEI~fLEEEL~~LE~-~~paS~~CKEv 57 (163)
|+-++.+.-..|+|+..|++++.+|-. ++.+..+-+|+
T Consensus 6 ~~~~~~~~~~~e~e~~~l~~~~~el~~~l~~~~~~~~e~ 44 (125)
T 1joc_A 6 RRALLERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQEL 44 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666777788888777766543 33333344444
No 268
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=34.83 E-value=22 Score=31.45 Aligned_cols=22 Identities=14% Similarity=0.132 Sum_probs=11.0
Q ss_pred HhHHHHHHHHH-------HHHHHHHHHhh
Q 037836 22 RELAKVQVLER-------EISFLEEELKT 43 (163)
Q Consensus 22 R~~Aelq~Leq-------EI~fLEEEL~~ 43 (163)
.|+-+|.+||. +|..||+.|++
T Consensus 88 kml~~~~~~e~~~~~~~~~i~~l~~~~~~ 116 (409)
T 1m1j_C 88 KIIEEIIRYENTILAHENTIQQLTDMHIM 116 (409)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHh
Confidence 35555555555 44455544443
No 269
>3ci3_A Cobalamin adenosyltransferase PDUO-like protein; adenosyltransferase variant, adenosylcobalamin binding, ATP binding; HET: 3PO 5AD B12; 1.11A {Lactobacillus reuteri} PDB: 3ci1_A* 3ci4_A* 2r6t_A* 2r6x_A* 3gah_A* 3gai_A* 3gaj_A*
Probab=34.80 E-value=21 Score=28.49 Aligned_cols=23 Identities=17% Similarity=0.161 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcc
Q 037836 24 LAKVQVLEREISFLEEELKTVDR 46 (163)
Q Consensus 24 ~Aelq~LeqEI~fLEEEL~~LE~ 46 (163)
..+|++||++|..+.++|..|.+
T Consensus 95 ~~~v~~LE~~id~~~~~l~pl~~ 117 (194)
T 3ci3_A 95 EQPTVWLEEKIDNYTQVVPAVKK 117 (194)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCSS
T ss_pred HHHHHHHHHHHHHHHhhCCCCCc
Confidence 58899999999999999988763
No 270
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=34.77 E-value=43 Score=21.88 Aligned_cols=13 Identities=31% Similarity=0.675 Sum_probs=6.1
Q ss_pred HHHHHHHHhhhcc
Q 037836 34 ISFLEEELKTVDR 46 (163)
Q Consensus 34 I~fLEEEL~~LE~ 46 (163)
+.-||.||+.||+
T Consensus 22 laaleselqalek 34 (48)
T 1g6u_A 22 LAALESELQALEK 34 (48)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444445544443
No 271
>1yf2_A Type I restriction-modification enzyme, S subunit; structura genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii} SCOP: d.287.1.2 d.287.1.2
Probab=34.61 E-value=26 Score=27.45 Aligned_cols=33 Identities=12% Similarity=0.320 Sum_probs=26.8
Q ss_pred CCchhhhHhHHHHHHHHHHHHHHHHHHhhhccc
Q 037836 15 PDLYGKRRELAKVQVLEREISFLEEELKTVDRF 47 (163)
Q Consensus 15 pD~~GKhR~~Aelq~LeqEI~fLEEEL~~LE~~ 47 (163)
|.+-=-+|+.+.|+.|+++|..+|++|+.|+.+
T Consensus 376 Ppl~eQ~~I~~~l~~ld~~i~~~~~~~~~l~~~ 408 (425)
T 1yf2_A 376 PPLEEQKQIAKILSSVDKSIELKKQKKEKLQRM 408 (425)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444456788888999999999999999988754
No 272
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=34.61 E-value=38 Score=24.12 Aligned_cols=38 Identities=18% Similarity=0.188 Sum_probs=24.6
Q ss_pred hHhHHHHHHHHHHHHHHHHHHhhhcccCchhhhhHHHH
Q 037836 21 RRELAKVQVLEREISFLEEELKTVDRFHPASRSCKEVA 58 (163)
Q Consensus 21 hR~~Aelq~LeqEI~fLEEEL~~LE~~~paS~~CKEv~ 58 (163)
.+++.+|..++.||.-|++|-+.|.-+-.-.+.-.||+
T Consensus 37 ~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~~~laevl 74 (79)
T 2zxx_A 37 EKLHKEIEQKDSEIARLRKENKDLAEVAEHVQYMAEVI 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888888888888777744433333333333
No 273
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A
Probab=34.58 E-value=38 Score=26.41 Aligned_cols=21 Identities=5% Similarity=0.195 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHhhhccc
Q 037836 27 VQVLEREISFLEEELKTVDRF 47 (163)
Q Consensus 27 lq~LeqEI~fLEEEL~~LE~~ 47 (163)
|..++++|..||++|++||..
T Consensus 52 i~~~~~~i~~~~~~l~~l~~~ 72 (228)
T 1flk_A 52 LSVHDIRLADMDLRFQVLETA 72 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHhhcc
Confidence 455555666666666666654
No 274
>4adz_A CSOR; transcription, copper sensor; 1.70A {Streptomyces lividans}
Probab=34.06 E-value=29 Score=26.95 Aligned_cols=46 Identities=13% Similarity=0.176 Sum_probs=30.7
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHHHhhhcccCchhhhhHHHHHhhhh
Q 037836 18 YGKRRELAKVQVLEREISFLEEELKTVDRFHPASRSCKEVADFVVA 63 (163)
Q Consensus 18 ~GKhR~~Aelq~LeqEI~fLEEEL~~LE~~~paS~~CKEv~~~Ves 63 (163)
.+.|+...+-+.|-+-++-+|..|+.|++|=..-+-|.||+.-|-+
T Consensus 42 ~~~~g~~~~Kk~ll~RLkRIeGQvrGI~rMIEedr~C~DIL~QlaA 87 (136)
T 4adz_A 42 RGVHGYHKQKAEHLKRLRRIEGQIRGLQRMVDEDVYCIDILTQVSA 87 (136)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4556666666777777777777777777777777889999876544
No 275
>1fzc_B Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_B* 1fza_B* 1fze_B* 1fzf_B* 1fzg_B* 1n86_B* 1n8e_B 2h43_B* 2hlo_B* 2hod_B* 2hpc_B* 2q9i_B* 2xnx_B 2xny_B 3e1i_B* 2z4e_B* 2oyh_B* 1ltj_B* 1rf0_B* 1lt9_B* ...
Probab=34.01 E-value=33 Score=29.26 Aligned_cols=41 Identities=20% Similarity=0.342 Sum_probs=29.5
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHhhhcccC----------c--hhhhhHHHHHh
Q 037836 20 KRRELAKVQVLEREISFLEEELKTVDRFH----------P--ASRSCKEVADF 60 (163)
Q Consensus 20 KhR~~Aelq~LeqEI~fLEEEL~~LE~~~----------p--aS~~CKEv~~~ 60 (163)
-+-+++.+.+|+++|..||+++++++..- | .-+-|+||...
T Consensus 32 I~~Lq~~le~l~~KIq~Le~~v~~~~~~~~~~~~~~~~~p~~~~~dC~~i~~~ 84 (328)
T 1fzc_B 32 LRVLRSILENLRSKIQKLESDVSAQMEYCRTPCTVSCNIPVVSGKECEEIIRK 84 (328)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSBCEECCCEESCCBSSHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcCCCCCCCCHHHHHhc
Confidence 45578888899999999999888776431 1 12469998864
No 276
>3f6n_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding, D binding protein; 3.10A {Cauliflower mosaic virus}
Probab=33.97 E-value=28 Score=27.02 Aligned_cols=22 Identities=9% Similarity=0.167 Sum_probs=17.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHhh
Q 037836 22 RELAKVQVLEREISFLEEELKT 43 (163)
Q Consensus 22 R~~Aelq~LeqEI~fLEEEL~~ 43 (163)
-++++|..|-.+|..|+.|+++
T Consensus 6 ~i~~ei~e~~~~i~~l~~~Ik~ 27 (129)
T 3f6n_A 6 QIQKEVSEILSDQKSMKADIKA 27 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888888777
No 277
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=33.88 E-value=16 Score=26.91 Aligned_cols=35 Identities=6% Similarity=-0.148 Sum_probs=9.9
Q ss_pred CCCCCCCCCchhhhHhHHHHHHHHHHHHHHHHHHh
Q 037836 8 PKSPPEYPDLYGKRRELAKVQVLEREISFLEEELK 42 (163)
Q Consensus 8 PKsPP~~pD~~GKhR~~Aelq~LeqEI~fLEEEL~ 42 (163)
+-.|+...+..-.|+++.+++++++++..++++.+
T Consensus 7 ~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~ 41 (268)
T 4ew8_A 7 HHHHSSGLVPRGSHMLQSALADRSAALAEAERLKR 41 (268)
T ss_dssp ------------------CCHHHHHHHHHHHHHHH
T ss_pred ccCccCCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555566776666666666655554443
No 278
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A
Probab=33.71 E-value=35 Score=25.45 Aligned_cols=23 Identities=9% Similarity=0.174 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhccc
Q 037836 25 AKVQVLEREISFLEEELKTVDRF 47 (163)
Q Consensus 25 Aelq~LeqEI~fLEEEL~~LE~~ 47 (163)
..|.+.+++|.-||++|++||..
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~ 39 (192)
T 1ca9_A 17 RSIGLKDLAMADLEQKVLEMEAS 39 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC
Confidence 44666778888888888888863
No 279
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=33.68 E-value=24 Score=30.79 Aligned_cols=26 Identities=23% Similarity=0.282 Sum_probs=17.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhhccc
Q 037836 22 RELAKVQVLEREISFLEEELKTVDRF 47 (163)
Q Consensus 22 R~~Aelq~LeqEI~fLEEEL~~LE~~ 47 (163)
++..+++.|++|+..++||++.|.+.
T Consensus 67 ~l~~~~~~~~~e~~~~~ee~~~l~~~ 92 (428)
T 4b4t_K 67 YIKDEQRHLKRELKRAQEEVKRIQSV 92 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34556667777777888888777554
No 280
>3fav_B ESAT-6, 6 kDa early secretory antigenic target; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_B
Probab=33.64 E-value=37 Score=22.11 Aligned_cols=21 Identities=10% Similarity=0.104 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 037836 24 LAKVQVLEREISFLEEELKTV 44 (163)
Q Consensus 24 ~Aelq~LeqEI~fLEEEL~~L 44 (163)
....+.|+.++.-|+.+++.|
T Consensus 18 ~~~~~~i~~~l~~l~~~v~~l 38 (94)
T 3fav_B 18 QGNVTSIHSLLDEGKQSLTKL 38 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444
No 281
>3v26_X ORF3, ORF95, probable sigma(54) modulation protein; ribosome hibernation factor, YHBH, protein E, stress respons stationary phase; 3.10A {Escherichia coli} PDB: 3v28_X 2rql_A
Probab=33.36 E-value=38 Score=23.69 Aligned_cols=23 Identities=17% Similarity=0.208 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhc
Q 037836 23 ELAKVQVLEREISFLEEELKTVD 45 (163)
Q Consensus 23 ~~Aelq~LeqEI~fLEEEL~~LE 45 (163)
+-+.++.|||+|+-..|.|++-.
T Consensus 74 ID~a~dkLerQLrK~K~k~~~~~ 96 (101)
T 3v26_X 74 IDGLIDKLARQLTKHKDKLKQHH 96 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Confidence 45678999999999999999754
No 282
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=33.30 E-value=42 Score=25.81 Aligned_cols=21 Identities=5% Similarity=0.210 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHhhhcc
Q 037836 26 KVQVLEREISFLEEELKTVDR 46 (163)
Q Consensus 26 elq~LeqEI~fLEEEL~~LE~ 46 (163)
.|.+-+++|..||+.|++||+
T Consensus 15 ~~~~~~~~~~~l~~~~~~~~~ 35 (198)
T 4ghu_A 15 MLSVHDIRLADMDLRFQVLET 35 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 345556688999999999995
No 283
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=33.16 E-value=32 Score=25.69 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhc
Q 037836 23 ELAKVQVLEREISFLEEELKTVD 45 (163)
Q Consensus 23 ~~Aelq~LeqEI~fLEEEL~~LE 45 (163)
+++||....+||..|++|+++|.
T Consensus 9 l~~eL~~~~~ei~~L~~ei~eLk 31 (106)
T 4e61_A 9 IQAELTKSQETIGSLNEEIEQYK 31 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777778877777777654
No 284
>2olt_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 2.00A {Shewanella oneidensis} PDB: 2iiu_A*
Probab=33.03 E-value=40 Score=25.58 Aligned_cols=46 Identities=13% Similarity=0.309 Sum_probs=28.5
Q ss_pred hHhHHHHHHHHHHHHHHHHHHhh----hcc-cCc-hhhhhHHHHHhhhhcCC
Q 037836 21 RRELAKVQVLEREISFLEEELKT----VDR-FHP-ASRSCKEVADFVVAKSD 66 (163)
Q Consensus 21 hR~~Aelq~LeqEI~fLEEEL~~----LE~-~~p-aS~~CKEv~~~Ves~pD 66 (163)
+....+|.++|+|+.-|+.++.. .|. +++ ....-+|+++.+|...|
T Consensus 160 ~~~~~~i~~lE~~~D~l~~~~~~~Lf~~~~~~d~~~~i~~~ei~~~lE~i~D 211 (227)
T 2olt_A 160 AKMINELDIIEEDTDDLQIQLRRQLFALESELNPVDVMFLYKTIEWVGGLAD 211 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHH
Confidence 45667888888888877766532 221 233 23366777777776655
No 285
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=33.00 E-value=20 Score=26.13 Aligned_cols=23 Identities=17% Similarity=0.326 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcc
Q 037836 24 LAKVQVLEREISFLEEELKTVDR 46 (163)
Q Consensus 24 ~Aelq~LeqEI~fLEEEL~~LE~ 46 (163)
..+++.|.+||.-|+++=+.|+.
T Consensus 5 ~~~~~~Lk~El~~L~~~E~~LD~ 27 (106)
T 2aze_B 5 GGRLEGLTQDLRQLQESEQQLDH 27 (106)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666555555553
No 286
>2nt8_A Cobalamin adenosyltransferase; ATP binding; HET: ATP; 1.68A {Lactobacillus reuteri}
Probab=32.94 E-value=23 Score=29.03 Aligned_cols=22 Identities=18% Similarity=0.128 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc
Q 037836 24 LAKVQVLEREISFLEEELKTVD 45 (163)
Q Consensus 24 ~Aelq~LeqEI~fLEEEL~~LE 45 (163)
.++|++||++|..++++|..|.
T Consensus 124 ~~~v~~LE~~Id~~~~~lppl~ 145 (223)
T 2nt8_A 124 EQPTVWLEEKIDNYTQVVPAVK 145 (223)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCS
T ss_pred HHHHHHHHHHHHHHHhhCCCCC
Confidence 5889999999999999998876
No 287
>1yf2_A Type I restriction-modification enzyme, S subunit; structura genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii} SCOP: d.287.1.2 d.287.1.2
Probab=32.85 E-value=31 Score=27.04 Aligned_cols=36 Identities=14% Similarity=0.361 Sum_probs=28.6
Q ss_pred CCCchhhhHhHHHHHHHHHHHHHHHHHHhhhcccCc
Q 037836 14 YPDLYGKRRELAKVQVLEREISFLEEELKTVDRFHP 49 (163)
Q Consensus 14 ~pD~~GKhR~~Aelq~LeqEI~fLEEEL~~LE~~~p 49 (163)
.|.+-=-+||.+.|+.|++.|..+|++++.|+.+..
T Consensus 165 lPpl~EQ~~I~~~l~~ld~~i~~~~~~i~~l~~~k~ 200 (425)
T 1yf2_A 165 LPPLEEQKQIAKILTKIDEGIEIIEKSINKLERIKK 200 (425)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666788999999999999999988888876543
No 288
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=32.80 E-value=38 Score=26.38 Aligned_cols=24 Identities=21% Similarity=0.195 Sum_probs=16.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhhc
Q 037836 22 RELAKVQVLEREISFLEEELKTVD 45 (163)
Q Consensus 22 R~~Aelq~LeqEI~fLEEEL~~LE 45 (163)
.+++.|++||+|+.-||-|++.+.
T Consensus 33 ~l~~~i~q~d~elqQLefq~kr~~ 56 (150)
T 4dci_A 33 EISNGIANADQQLAQLEQEGQTVV 56 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777777776653
No 289
>1d66_A Protein (GAL4); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.70A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1aw6_A
Probab=32.79 E-value=22 Score=21.90 Aligned_cols=13 Identities=15% Similarity=0.419 Sum_probs=6.2
Q ss_pred HHHHHHHHHhhhc
Q 037836 33 EISFLEEELKTVD 45 (163)
Q Consensus 33 EI~fLEEEL~~LE 45 (163)
.|..||+.|++||
T Consensus 53 ~~~~Le~rl~~LE 65 (66)
T 1d66_A 53 HLTEVESRLERLE 65 (66)
T ss_dssp HHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHc
Confidence 3444555555554
No 290
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=32.54 E-value=43 Score=23.09 Aligned_cols=21 Identities=29% Similarity=0.515 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhc
Q 037836 25 AKVQVLEREISFLEEELKTVD 45 (163)
Q Consensus 25 Aelq~LeqEI~fLEEEL~~LE 45 (163)
+.|..||+++++-++|+++|.
T Consensus 25 e~I~eLE~~L~~kd~eI~eLr 45 (67)
T 1zxa_A 25 ERIKELEKRLSEKEEEIQELK 45 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555555443
No 291
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=32.44 E-value=30 Score=27.58 Aligned_cols=18 Identities=17% Similarity=0.195 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHhhhc
Q 037836 28 QVLEREISFLEEELKTVD 45 (163)
Q Consensus 28 q~LeqEI~fLEEEL~~LE 45 (163)
+.|++||.+++.++..||
T Consensus 93 ~aL~kEie~~~~~i~~lE 110 (256)
T 3na7_A 93 RSLNIEEDIAKERSNQAN 110 (256)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333334444444433333
No 292
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=32.41 E-value=40 Score=23.28 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhc
Q 037836 25 AKVQVLEREISFLEEELKTVD 45 (163)
Q Consensus 25 Aelq~LeqEI~fLEEEL~~LE 45 (163)
|+-.+|+|++.-|.+||+.+-
T Consensus 32 AKWaKL~Rk~DKl~~ele~l~ 52 (65)
T 3sja_C 32 AKWTKNNRKLDSLDKEINNLK 52 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445567777777777777664
No 293
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=32.37 E-value=40 Score=24.57 Aligned_cols=26 Identities=8% Similarity=0.017 Sum_probs=19.0
Q ss_pred hHhHHHHHHHHHHHHHHHHHHhhhcc
Q 037836 21 RRELAKVQVLEREISFLEEELKTVDR 46 (163)
Q Consensus 21 hR~~Aelq~LeqEI~fLEEEL~~LE~ 46 (163)
..+..++++...|+..|++++++||.
T Consensus 85 ~~l~~~~~~e~~~~~~L~~~i~~Le~ 110 (117)
T 3kin_B 85 EEWKKKYEKEKEKNKALKSVIQHLEV 110 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555677777788888888888873
No 294
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=32.11 E-value=17 Score=28.90 Aligned_cols=28 Identities=7% Similarity=0.019 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccCchh
Q 037836 24 LAKVQVLEREISFLEEELKTVDRFHPAS 51 (163)
Q Consensus 24 ~Aelq~LeqEI~fLEEEL~~LE~~~paS 51 (163)
....+.|+.++.-||+|.+.|++--.+.
T Consensus 55 ~~g~~~L~~~~~~Le~~~~~L~~~i~~l 82 (174)
T 2p22_A 55 AIDKNHLRAVEQAIEQTMHSLNAQIDVL 82 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777887777777654433
No 295
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=31.88 E-value=52 Score=22.70 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhc
Q 037836 25 AKVQVLEREISFLEEELKTVD 45 (163)
Q Consensus 25 Aelq~LeqEI~fLEEEL~~LE 45 (163)
++|+.=+.||+-|+++|+.+-
T Consensus 32 ~~L~~kd~eI~eLr~~LdK~q 52 (67)
T 1zxa_A 32 KRLSEKEEEIQELKRKLHKCQ 52 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444445555666665555543
No 296
>1rty_A YVQK protein; all alpha-helical trimeric protein, structural genomics, PSI, protein structure initiative; 2.40A {Bacillus subtilis} SCOP: a.25.2.2
Probab=31.86 E-value=25 Score=28.01 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcc
Q 037836 24 LAKVQVLEREISFLEEELKTVDR 46 (163)
Q Consensus 24 ~Aelq~LeqEI~fLEEEL~~LE~ 46 (163)
...|++||++|..+.++|..|.+
T Consensus 87 ~~~v~~LE~~Id~~~~~l~pl~~ 109 (193)
T 1rty_A 87 EESVSFLETRIDAYTAEAPELKK 109 (193)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCCS
T ss_pred HHHHHHHHHHHHHHHhhCCCCCc
Confidence 38899999999999999988763
No 297
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=31.78 E-value=35 Score=27.53 Aligned_cols=28 Identities=18% Similarity=0.271 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccCchh
Q 037836 24 LAKVQVLEREISFLEEELKTVDRFHPAS 51 (163)
Q Consensus 24 ~Aelq~LeqEI~fLEEEL~~LE~~~paS 51 (163)
+++|+.+|+++.-|+..+..|+++..++
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (321)
T 3p7i_A 290 LAKTTAIQAQLDDLDRLNNALSAMSSVS 317 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 3466777777777777777776665554
No 298
>2gr7_A Adhesin; trimeric autotransporter, adhesion, membrane protein, protei secretion, microbial pathogenesis; HET: C8E; 2.30A {Haemophilus influenzae} SCOP: d.24.1.4
Probab=31.49 E-value=33 Score=25.79 Aligned_cols=50 Identities=16% Similarity=0.089 Sum_probs=29.2
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHHHhhhcccCchhhhhHHHHHhhhhcCCCCcc
Q 037836 18 YGKRRELAKVQVLEREISFLEEELKTVDRFHPASRSCKEVADFVVAKSDPLIP 70 (163)
Q Consensus 18 ~GKhR~~Aelq~LeqEI~fLEEEL~~LE~~~paS~~CKEv~~~Ves~pDPLLP 70 (163)
.--|-....|+.++++|.-|+++|+++++.-.+-.+ ...-+-..|.|.+|
T Consensus 25 ~QL~~v~~~v~~~~~~in~L~~~I~~~~k~a~aGiA---~A~A~A~LPq~~~p 74 (129)
T 2gr7_A 25 SQLYAVAKGVTNLAGQVNNLEGKVNKVGKRADAGTA---SALAASQLPQATMP 74 (129)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHTCCCCCST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhCCCcccCC
Confidence 333445566778888899999888888764333221 22334456766666
No 299
>3vlc_E Golgi to ER traffic protein 1; ATPase, membrane protein insertion, ATP binding, membrane PR binding; HET: ADP; 4.50A {Saccharomyces cerevisiae}
Probab=31.37 E-value=29 Score=25.52 Aligned_cols=20 Identities=15% Similarity=0.237 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHhhhcccC
Q 037836 29 VLEREISFLEEELKTVDRFH 48 (163)
Q Consensus 29 ~LeqEI~fLEEEL~~LE~~~ 48 (163)
+|+|++.-|.+||+.+.+.-
T Consensus 60 KL~Rk~DKl~~ele~l~~~L 79 (94)
T 3vlc_E 60 KNNRKLDSLDKEINNLKDEI 79 (94)
T ss_dssp HHHHHHHHHHHHTTTHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45556666667766665433
No 300
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=31.34 E-value=50 Score=24.66 Aligned_cols=20 Identities=35% Similarity=0.413 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 037836 25 AKVQVLEREISFLEEELKTV 44 (163)
Q Consensus 25 Aelq~LeqEI~fLEEEL~~L 44 (163)
+.|.+|.+||.-|..||+.|
T Consensus 15 ~~Ie~Lkreie~lk~ele~l 34 (120)
T 3i00_A 15 HLIERLYREISGLKAQLENM 34 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44666777777777776666
No 301
>1slq_A VP4; beta sandwich, greek KEY, alpha helical triple coiled-coil, membrane penetration protein, non-enveloped virus, spike protein; 3.20A {Rhesus rotavirus} SCOP: f.47.1.1
Probab=31.17 E-value=28 Score=29.95 Aligned_cols=18 Identities=39% Similarity=0.564 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHhhhc
Q 037836 28 QVLEREISFLEEELKTVD 45 (163)
Q Consensus 28 q~LeqEI~fLEEEL~~LE 45 (163)
|.|||+|+.|.||.++|-
T Consensus 245 qDLerql~~LR~eFN~Ls 262 (278)
T 1slq_A 245 QDLERQLGELREEFNALS 262 (278)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHH
Confidence 689999999999999885
No 302
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=30.84 E-value=44 Score=22.64 Aligned_cols=27 Identities=15% Similarity=0.118 Sum_probs=19.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhhcccC
Q 037836 22 RELAKVQVLEREISFLEEELKTVDRFH 48 (163)
Q Consensus 22 R~~Aelq~LeqEI~fLEEEL~~LE~~~ 48 (163)
.+..++.+++++-.-|+.+|+.+|+-|
T Consensus 16 ~L~~~v~~~e~~Q~~ldq~Ld~Ie~QQ 42 (64)
T 3t97_C 16 SLHREVEKVKLDQKRLDQELDFILSQQ 42 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777777777777888777766
No 303
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=30.76 E-value=24 Score=28.82 Aligned_cols=20 Identities=20% Similarity=0.104 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 037836 25 AKVQVLEREISFLEEELKTV 44 (163)
Q Consensus 25 Aelq~LeqEI~fLEEEL~~L 44 (163)
+++++|++|++-||.+|++|
T Consensus 155 ~~i~ql~~En~~le~~Ie~L 174 (250)
T 2ve7_C 155 DKMQQLNAAHQEALMKLERL 174 (250)
T ss_dssp HHHHHHHHHHHHHHHSCC--
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 304
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=30.74 E-value=43 Score=25.69 Aligned_cols=20 Identities=10% Similarity=0.175 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHhhhccc
Q 037836 28 QVLEREISFLEEELKTVDRF 47 (163)
Q Consensus 28 q~LeqEI~fLEEEL~~LE~~ 47 (163)
+.|++++..|++|+++|+.+
T Consensus 82 ~~l~~~~~~l~~~i~~l~~~ 101 (278)
T 1r8e_A 82 AFYTEQERQIREKLDFLSAL 101 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555443
No 305
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=30.58 E-value=38 Score=27.68 Aligned_cols=25 Identities=16% Similarity=0.248 Sum_probs=17.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhhcc
Q 037836 22 RELAKVQVLEREISFLEEELKTVDR 46 (163)
Q Consensus 22 R~~Aelq~LeqEI~fLEEEL~~LE~ 46 (163)
.++.|+.+|.+|+.-.++|++.|..
T Consensus 24 ~L~~En~~L~~ql~~k~~ei~~L~~ 48 (190)
T 4emc_A 24 NLVNENFVLSEKLDTKATEIKQLQK 48 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777778888887878777543
No 306
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=30.35 E-value=25 Score=25.29 Aligned_cols=19 Identities=16% Similarity=0.198 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHhhhc
Q 037836 27 VQVLEREISFLEEELKTVD 45 (163)
Q Consensus 27 lq~LeqEI~fLEEEL~~LE 45 (163)
.++|+.|+..|++|++.++
T Consensus 9 ~~~l~~~~~~l~~~i~~lk 27 (109)
T 2wg5_A 9 MKQLEDKVEELLSKNYHLE 27 (109)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5889999999999998775
No 307
>3h43_A Proteasome-activating nucleotidase; regulatory particle, nucleosidase, ATP-binding, cytoplasm, nucleotide-binding, hydrolase; 2.10A {Methanocaldococcus jannaschii}
Probab=30.31 E-value=29 Score=24.17 Aligned_cols=18 Identities=22% Similarity=0.178 Sum_probs=13.1
Q ss_pred HHHHHHHHHHhhhcccCc
Q 037836 32 REISFLEEELKTVDRFHP 49 (163)
Q Consensus 32 qEI~fLEEEL~~LE~~~p 49 (163)
+|+..|+|||+.|-+..-
T Consensus 2 ~ev~~lkeei~~L~~~P~ 19 (85)
T 3h43_A 2 KENEILRRELDRMRVPPL 19 (85)
T ss_dssp HHHHHHHHHHHHHHSCCE
T ss_pred cHHHHHHHHHHHhcCCCc
Confidence 577888888888766553
No 308
>1ydx_A Type I restriction enzyme specificity protein Mg4; type-I HSDS, DNA binding protein; 2.30A {Mycoplasma genitalium} SCOP: d.287.1.2 d.287.1.2
Probab=29.78 E-value=34 Score=27.38 Aligned_cols=32 Identities=16% Similarity=0.246 Sum_probs=25.7
Q ss_pred CchhhhHhHHHHHHHHHHHHHHHHHHhhhccc
Q 037836 16 DLYGKRRELAKVQVLEREISFLEEELKTVDRF 47 (163)
Q Consensus 16 D~~GKhR~~Aelq~LeqEI~fLEEEL~~LE~~ 47 (163)
++-=-.++...|+.|+++|..+|++|+.|+.+
T Consensus 353 pl~eQ~~I~~~l~~id~~i~~~~~~i~~L~~l 384 (406)
T 1ydx_A 353 SFQLQRKAGKIVFLLDQKLDQYKKELSSLTVI 384 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445778888899999999999999888754
No 309
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=29.76 E-value=52 Score=22.75 Aligned_cols=24 Identities=29% Similarity=0.392 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcc
Q 037836 23 ELAKVQVLEREISFLEEELKTVDR 46 (163)
Q Consensus 23 ~~Aelq~LeqEI~fLEEEL~~LE~ 46 (163)
+.+.|..||-.|.|+|+-|++|..
T Consensus 12 le~Ri~~LE~klAfqE~tIeeLn~ 35 (78)
T 3efg_A 12 LEARLVELETRLSFQEQALTELSE 35 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777777766666643
No 310
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=29.71 E-value=81 Score=20.56 Aligned_cols=36 Identities=3% Similarity=-0.009 Sum_probs=27.6
Q ss_pred CCCCCchhhhHhHHHHHHHHHHHHHHHHHHhhhccc
Q 037836 12 PEYPDLYGKRRELAKVQVLEREISFLEEELKTVDRF 47 (163)
Q Consensus 12 P~~pD~~GKhR~~Aelq~LeqEI~fLEEEL~~LE~~ 47 (163)
|...|+-+-..++.+.+.|++||.--+..++.|..+
T Consensus 30 ~~~~d~~~v~~~l~~h~~l~~ei~~~~~~v~~~~~~ 65 (119)
T 3uun_A 30 EISNDVEVVKDQFHTHEGYMMDLTAHQGRVGNILQL 65 (119)
T ss_dssp SCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 334577777888888888999998888888777544
No 311
>1woz_A 177AA long conserved hypothetical protein (ST1454; structural genomics, unknown function; 1.94A {Sulfolobus tokodaii}
Probab=29.57 E-value=30 Score=27.17 Aligned_cols=22 Identities=23% Similarity=0.092 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc
Q 037836 24 LAKVQVLEREISFLEEELKTVD 45 (163)
Q Consensus 24 ~Aelq~LeqEI~fLEEEL~~LE 45 (163)
...|++||++|..+.++|..|.
T Consensus 79 ~~~v~~LE~~id~~~~~l~~l~ 100 (177)
T 1woz_A 79 EKYVKWLEERTVEYRKESGPVK 100 (177)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCE
T ss_pred HHHHHHHHHHHHHHHhhCCCCC
Confidence 3889999999999999998875
No 312
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=29.50 E-value=74 Score=24.39 Aligned_cols=42 Identities=17% Similarity=0.283 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccCchhhhhHHHHHhhhhcCCC
Q 037836 24 LAKVQVLEREISFLEEELKTVDRFHPASRSCKEVADFVVAKSDP 67 (163)
Q Consensus 24 ~Aelq~LeqEI~fLEEEL~~LE~~~paS~~CKEv~~~Ves~pDP 67 (163)
.+.|++|+.|..-.++||++. +..+-..-+.|-+.+....|=
T Consensus 91 ~~ri~~Le~E~~~~~~el~~~--v~eae~ll~~v~~~l~~ia~~ 132 (151)
T 1yke_B 91 LRKIDMLQKKLVEVEDEKIEA--IKKKEKLLRHVDSLIEDFVDG 132 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 344555666655555555432 344444555555555555553
No 313
>1auk_A Arylsulfatase A; cerebroside-3-sulfate hydrolysis, lysosomal enzyme, hydrolas; HET: NDG NAG; 2.10A {Homo sapiens} SCOP: c.76.1.2 PDB: 1n2k_A* 1n2l_A* 1e1z_P* 1e2s_P* 1e3c_P* 1e33_P*
Probab=29.47 E-value=66 Score=27.18 Aligned_cols=34 Identities=9% Similarity=0.130 Sum_probs=28.0
Q ss_pred CCCCCCchhhhHhHHHHHHHHHHHHHHHHHHhhh
Q 037836 11 PPEYPDLYGKRRELAKVQVLEREISFLEEELKTV 44 (163)
Q Consensus 11 PP~~pD~~GKhR~~Aelq~LeqEI~fLEEEL~~L 44 (163)
|+.|.+...+..-.+.|..++++|+-|-+.|+++
T Consensus 217 p~~~~~~~~~~~Y~~~v~~~D~~vG~ll~~L~~~ 250 (489)
T 1auk_A 217 GQSFAERSGRGPFGDSLMELDAAVGTLMTAIGDL 250 (489)
T ss_dssp CTTTTTTSSSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ChhhccccchhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3556666666778899999999999999999986
No 314
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=29.37 E-value=24 Score=25.39 Aligned_cols=31 Identities=29% Similarity=0.387 Sum_probs=17.0
Q ss_pred CchhhhHhHH---HHHHHHHHHHHHHHHHhhhcc
Q 037836 16 DLYGKRRELA---KVQVLEREISFLEEELKTVDR 46 (163)
Q Consensus 16 D~~GKhR~~A---elq~LeqEI~fLEEEL~~LE~ 46 (163)
|+.-.|-|.| ||..|..+|..|+|...+||.
T Consensus 3 DLVKtHLm~AVREEVevLKe~I~EL~e~~~qLE~ 36 (78)
T 1dip_A 3 DLVKNHLMYAVREEVEILKEQIRELVEKNSQLER 36 (78)
T ss_dssp CSTTTGGGGTCTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444433 455666666666666666653
No 315
>2ovj_A Mgcracgap, RAC GTPase-activating protein 1; signaling protein, structural genomics, structural genomics consortium, SGC; HET: 7PE; 1.49A {Homo sapiens}
Probab=29.18 E-value=88 Score=23.62 Aligned_cols=23 Identities=22% Similarity=0.488 Sum_probs=14.4
Q ss_pred hhhhhHHHHHhhhhcCCCCcccc
Q 037836 50 ASRSCKEVADFVVAKSDPLIPVN 72 (163)
Q Consensus 50 aS~~CKEv~~~Ves~pDPLLP~t 72 (163)
+-.+.-=+..|...-||||||..
T Consensus 70 ~h~va~lLK~flreLpePLi~~~ 92 (201)
T 2ovj_A 70 IHAICSLLKDFLRNLKEPLLTFR 92 (201)
T ss_dssp HHHHHHHHHHHHHTSSSCTTCTT
T ss_pred HHHHHHHHHHHHHhCCCCCCCHH
Confidence 33344444556677788888864
No 316
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=28.87 E-value=71 Score=28.51 Aligned_cols=47 Identities=17% Similarity=0.148 Sum_probs=38.0
Q ss_pred chhhhHhHHHHHHHHHHHHHHHHHHhh---------hcccCchhh--hhHHHHHhhhh
Q 037836 17 LYGKRRELAKVQVLEREISFLEEELKT---------VDRFHPASR--SCKEVADFVVA 63 (163)
Q Consensus 17 ~~GKhR~~Aelq~LeqEI~fLEEEL~~---------LE~~~paS~--~CKEv~~~Ves 63 (163)
...|....+++..|..|+..||+.|.. +||++.|-. .-+.|.+.+..
T Consensus 12 ~~~k~~y~~~l~~l~~~L~~lQ~~~~~~~~~~vlIvfEG~D~AGKg~~Ik~l~~~l~p 69 (500)
T 3czp_A 12 SIDKDTYEKAVIELREALLEAQFELKQQARFPVIILINGIEGAGKGETVKLLNEWMDP 69 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECTTSSHHHHHHHHHHHSCG
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCcCCCCHHHHHHHHHHhcCc
Confidence 345777888999999999999999988 799998865 67777766643
No 317
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=28.82 E-value=33 Score=25.19 Aligned_cols=21 Identities=14% Similarity=0.226 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHhhhcccC
Q 037836 28 QVLEREISFLEEELKTVDRFH 48 (163)
Q Consensus 28 q~LeqEI~fLEEEL~~LE~~~ 48 (163)
.+|+|++.-|.+||+.+.+.-
T Consensus 52 aKL~Rk~DKl~~ele~l~~~l 72 (93)
T 3sjb_C 52 TKNNRKLDSLDKEINNLKDEI 72 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777777765433
No 318
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=28.77 E-value=56 Score=23.36 Aligned_cols=24 Identities=17% Similarity=0.206 Sum_probs=19.1
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHhh
Q 037836 20 KRRELAKVQVLEREISFLEEELKT 43 (163)
Q Consensus 20 KhR~~Aelq~LeqEI~fLEEEL~~ 43 (163)
-..++++|+.|++++..|+..|++
T Consensus 18 ~~~l~~~~~~l~~~l~~~~~~l~~ 41 (182)
T 3kqg_A 18 ASALNTKIRALQGSLENMSKLLKR 41 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678899999999988888864
No 319
>2v6v_A BUD emergence protein 1; homotypic fusion, regulator, PI3P, 3-kinase, PX domain, SH3 domain, cytoskeleton, cell polarity; 1.5A {Saccharomyces cerevisiae} PDB: 2czo_A
Probab=28.69 E-value=55 Score=24.62 Aligned_cols=50 Identities=6% Similarity=0.013 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHhhhcccCchhhhhHHHHHhhhhcCCCCcccccCCCc
Q 037836 28 QVLEREISFLEEELKTVDRFHPASRSCKEVADFVVAKSDPLIPVNRKNRR 77 (163)
Q Consensus 28 q~LeqEI~fLEEEL~~LE~~~paS~~CKEv~~~Ves~pDPLLP~t~g~~~ 77 (163)
..+|+-..-||+=|+.|=++.+.-.-+.+|.+|.+.+++-+-|....+++
T Consensus 99 ~~~e~Rr~~Le~YL~~Ll~lp~~i~~s~~v~~Ff~~~~~D~~~~~~~~~~ 148 (156)
T 2v6v_A 99 SITKKRKEDLNIYVADLVNLPDYISRSEMVHSLFVVLNNGFDREFERDEN 148 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCHHHHTSHHHHHTTSCCSSSSCEEECC---
T ss_pred HHHHHHHHHHHHHHHHHHhCCccccCCHHHHHHhCCCCcccccccccCcC
Confidence 35677778888889999998887778899999999999999998887766
No 320
>3ke4_A Hypothetical cytosolic protein; helix bundle, transferase; 1.90A {Bacillus cereus} PDB: 3ke5_A*
Probab=28.43 E-value=31 Score=28.19 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcc
Q 037836 24 LAKVQVLEREISFLEEELKTVDR 46 (163)
Q Consensus 24 ~Aelq~LeqEI~fLEEEL~~LE~ 46 (163)
...|+.||++|..++++|..|.+
T Consensus 106 ~~~v~~LE~~ID~~~~~lppl~~ 128 (213)
T 3ke4_A 106 IVMVESLERKIDLYIEEAPPLER 128 (213)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCCS
T ss_pred HHHHHHHHHHHHHHHhcCCCCCc
Confidence 56799999999999999987754
No 321
>1ysm_A Calcyclin-binding protein; helix-turn-helix, metal binding protein; NMR {Mus musculus} SCOP: a.2.16.1
Probab=28.03 E-value=46 Score=23.22 Aligned_cols=17 Identities=41% Similarity=0.411 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHhhh
Q 037836 28 QVLEREISFLEEELKTV 44 (163)
Q Consensus 28 q~LeqEI~fLEEEL~~L 44 (163)
+.|.+||+.||.||..+
T Consensus 29 ~~L~~ei~~lE~ei~~~ 45 (77)
T 1ysm_A 29 DTLTSEKSKIETELKNK 45 (77)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45677788888777765
No 322
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=27.95 E-value=61 Score=19.17 Aligned_cols=21 Identities=19% Similarity=0.347 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 037836 24 LAKVQVLEREISFLEEELKTV 44 (163)
Q Consensus 24 ~Aelq~LeqEI~fLEEEL~~L 44 (163)
.-|-+.|||.|.-|++.+.+|
T Consensus 6 efendaleqkiaalkqkiasl 26 (28)
T 3ra3_A 6 EFENDALEQKIAALKQKIASL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHh
Confidence 345677888888888877765
No 323
>1yhn_B RILP, RAB interacting lysosomal protein; protein transport; HET: GTP; 3.00A {Homo sapiens} SCOP: h.1.34.1
Probab=27.88 E-value=63 Score=22.51 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=16.7
Q ss_pred hHhHHHHHHHHHHHHHHHHHHhhh
Q 037836 21 RRELAKVQVLEREISFLEEELKTV 44 (163)
Q Consensus 21 hR~~Aelq~LeqEI~fLEEEL~~L 44 (163)
+.++-|-+.|.-++-+|||||.-.
T Consensus 6 r~iLqERNELKa~vf~lqeEL~yY 29 (65)
T 1yhn_B 6 EQILQERNELKAKVFLLKEELAYF 29 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777788888887643
No 324
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=27.86 E-value=58 Score=22.85 Aligned_cols=20 Identities=20% Similarity=0.285 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 037836 25 AKVQVLEREISFLEEELKTV 44 (163)
Q Consensus 25 Aelq~LeqEI~fLEEEL~~L 44 (163)
.+|..|.+.|+.||+||+.+
T Consensus 44 ~ei~sL~kKiq~lE~eld~~ 63 (101)
T 3u59_A 44 EEQQGLQKKLKGTEDEVEKY 63 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666543
No 325
>3i5c_A Fusion of general control protein GCN4 and WSPR R regulator protein; C-DI-GMP, ggdef, leucine zipper, signaling protein; HET: C2E; 1.94A {Pseudomonas aeruginosa PAO1} PDB: 3i5b_A*
Probab=27.85 E-value=62 Score=22.82 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=15.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhhcc
Q 037836 22 RELAKVQVLEREISFLEEELKTVDR 46 (163)
Q Consensus 22 R~~Aelq~LeqEI~fLEEEL~~LE~ 46 (163)
.+..+++.|.+++..|++++++|+.
T Consensus 4 ~l~~~~~~l~~~~~~~~~~~~~l~~ 28 (206)
T 3i5c_A 4 QLEDKVEELLSKNYHLENEVARLKK 28 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666666666666554
No 326
>2ah6_A BH1595, unknown conserved protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bacillus halodurans}
Probab=27.85 E-value=32 Score=27.84 Aligned_cols=22 Identities=23% Similarity=0.261 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc
Q 037836 24 LAKVQVLEREISFLEEELKTVD 45 (163)
Q Consensus 24 ~Aelq~LeqEI~fLEEEL~~LE 45 (163)
..+|++||++|..+.++|..|.
T Consensus 100 ~~~v~~LE~~Id~~~~~l~pl~ 121 (208)
T 2ah6_A 100 QEIVDFLEQRIDAYIKEAPELE 121 (208)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHHHHHHhhCCCCc
Confidence 3889999999999999998876
No 327
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=27.70 E-value=73 Score=19.20 Aligned_cols=20 Identities=30% Similarity=0.546 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHhhhc
Q 037836 26 KVQVLEREISFLEEELKTVD 45 (163)
Q Consensus 26 elq~LeqEI~fLEEEL~~LE 45 (163)
+-..||..++-||..|+.||
T Consensus 9 kcaalesklqalekkleale 28 (31)
T 3ljm_A 9 KCAALESKLQALEKKLEALE 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34456677777777777666
No 328
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=27.62 E-value=45 Score=32.47 Aligned_cols=24 Identities=17% Similarity=0.232 Sum_probs=17.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhhc
Q 037836 22 RELAKVQVLEREISFLEEELKTVD 45 (163)
Q Consensus 22 R~~Aelq~LeqEI~fLEEEL~~LE 45 (163)
+++.+|+.|+.|...|++++++||
T Consensus 1020 ~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1020 ETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677777777777777777777
No 329
>1qsd_A Protein (beta-tubulin binding post-chaperonin cofactor); four-helix-bundle, chaperone; 2.20A {Saccharomyces cerevisiae} SCOP: a.7.5.1
Probab=27.47 E-value=40 Score=24.58 Aligned_cols=34 Identities=18% Similarity=0.039 Sum_probs=17.6
Q ss_pred hHhHHHHHHHHHHHHHHHHHHhhhcccCchhhhhHHHHHhhh
Q 037836 21 RRELAKVQVLEREISFLEEELKTVDRFHPASRSCKEVADFVV 62 (163)
Q Consensus 21 hR~~Aelq~LeqEI~fLEEEL~~LE~~~paS~~CKEv~~~Ve 62 (163)
+|++++++.|++- |+.++|.+.... =+|+++.+.
T Consensus 67 ~Rl~~a~~~L~~~-------l~~~~~~ee~~~-Ake~l~~a~ 100 (106)
T 1qsd_A 67 EKIREFKEDLEQF-------LKTYQGTEDVSD-ARSAITSAQ 100 (106)
T ss_dssp HHHHHHHHHHHHH-------HHTCCSSSCCHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHH-------HHhccCcHHHHH-HHHHHHHHH
Confidence 4555555555553 345666555433 255555443
No 330
>1ux5_A BNI1 protein; structural protein, FH2 actin cytoskeleton; 2.5A {Saccharomyces cerevisiae} SCOP: a.207.1.1 PDB: 1y64_B* 1ux4_A
Probab=27.41 E-value=79 Score=26.68 Aligned_cols=19 Identities=11% Similarity=0.237 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 037836 24 LAKVQVLEREISFLEEELK 42 (163)
Q Consensus 24 ~Aelq~LeqEI~fLEEEL~ 42 (163)
+++|+.|++.+..++.||+
T Consensus 297 ~~d~~~L~~~l~~v~~~l~ 315 (411)
T 1ux5_A 297 VNDCKDFSQSIVNVERSVE 315 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666665
No 331
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=27.39 E-value=54 Score=24.41 Aligned_cols=18 Identities=22% Similarity=0.431 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 037836 25 AKVQVLEREISFLEEELK 42 (163)
Q Consensus 25 Aelq~LeqEI~fLEEEL~ 42 (163)
+.|++|+.|..-.++||+
T Consensus 92 ~ri~~L~~E~~~~~~el~ 109 (132)
T 1ykh_B 92 RKIDMLQKKLVEVEDEKI 109 (132)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555554444
No 332
>3f42_A Protein HP0035; helicobacter pylori unknown-function, structural genomics, P protein structure initiative; HET: MSE; 1.78A {Helicobacter pylori}
Probab=27.26 E-value=41 Score=24.17 Aligned_cols=24 Identities=25% Similarity=0.249 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHhhhcccCch
Q 037836 27 VQVLEREISFLEEELKTVDRFHPA 50 (163)
Q Consensus 27 lq~LeqEI~fLEEEL~~LE~~~pa 50 (163)
+|++++++.-+||||++.|-...|
T Consensus 12 mq~mQ~~m~~~QeeL~~~~v~g~s 35 (99)
T 3f42_A 12 LDGMKKEFSQLEEKNKDTIHTSKS 35 (99)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHHHHHHHhcCEEEEEE
Confidence 389999999999999998865544
No 333
>2pmr_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.32A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.8.11.1
Probab=27.18 E-value=84 Score=22.31 Aligned_cols=33 Identities=18% Similarity=0.352 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHhhhcccCchhhhhHHHHHhh
Q 037836 28 QVLEREISFLEEELKTVDRFHPASRSCKEVADFV 61 (163)
Q Consensus 28 q~LeqEI~fLEEEL~~LE~~~paS~~CKEv~~~V 61 (163)
.++++-|+.|+|-|++++.+. ....=+|+++.+
T Consensus 7 Eki~kYi~~leeaL~~i~~~~-l~~~a~~~l~mA 39 (87)
T 2pmr_A 7 ERIEKDLELLEKNLMEMKSIK-LSDDEEAVVERA 39 (87)
T ss_dssp HHHHHHHHHHHHHHHHHTTSC-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccccc-chHHHHHHHHHH
Confidence 578999999999999999742 222334555443
No 334
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=26.57 E-value=55 Score=23.57 Aligned_cols=18 Identities=22% Similarity=0.340 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 037836 27 VQVLEREISFLEEELKTV 44 (163)
Q Consensus 27 lq~LeqEI~fLEEEL~~L 44 (163)
.+-|+.||.-|++||++|
T Consensus 54 n~eL~~e~~~l~~~~eel 71 (81)
T 1wt6_A 54 NRDLEAHVRQLQERMELL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445666666666666665
No 335
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=26.55 E-value=74 Score=22.03 Aligned_cols=17 Identities=24% Similarity=0.427 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHhhhc
Q 037836 29 VLEREISFLEEELKTVD 45 (163)
Q Consensus 29 ~LeqEI~fLEEEL~~LE 45 (163)
.|.+|++.||.+|+.|.
T Consensus 38 ~ls~Elr~mQ~~lq~LQ 54 (63)
T 2w6a_A 38 SLSDELRKLQREIHKLQ 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 46678888888877764
No 336
>1oxj_A RNA-binding protein smaug; SAM domain, PHAT domain; 1.80A {Drosophila melanogaster} SCOP: a.60.1.2 a.118.1.13
Probab=26.55 E-value=1.1e+02 Score=24.57 Aligned_cols=46 Identities=13% Similarity=0.172 Sum_probs=32.9
Q ss_pred hhhhHhHHHHHHHHHHHHHHHH-HHhhhcccCchhhhhHHHHHhhhh
Q 037836 18 YGKRRELAKVQVLEREISFLEE-ELKTVDRFHPASRSCKEVADFVVA 63 (163)
Q Consensus 18 ~GKhR~~Aelq~LeqEI~fLEE-EL~~LE~~~paS~~CKEv~~~Ves 63 (163)
.-||+|+.+|+.|...-..|.+ |=+-+||-.....+-+|+-..|.+
T Consensus 50 GARrKIL~aIq~Lrer~~~l~~le~~~~~g~~~l~~~l~el~~i~~t 96 (173)
T 1oxj_A 50 GASHKLALCIDKLKERANILNRVEQELLSGQMELSTAVEELTNIVLT 96 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHTTTTS
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhhccchHHHHHHHHHHHHHhC
Confidence 4477888889988766544432 223356777899999999999876
No 337
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=26.51 E-value=67 Score=23.27 Aligned_cols=24 Identities=8% Similarity=0.191 Sum_probs=12.5
Q ss_pred HhHHHHHHH-------HHHHHHHHHHHhhhc
Q 037836 22 RELAKVQVL-------EREISFLEEELKTVD 45 (163)
Q Consensus 22 R~~Aelq~L-------eqEI~fLEEEL~~LE 45 (163)
++++||..| ++.|+.+++.|+.|-
T Consensus 10 ~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lt 40 (106)
T 2aze_B 10 GLTQDLRQLQESEQQLDHLMNICTTQLRLLS 40 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555555 445555555555543
No 338
>2g2d_A ATP:cobalamin adenosyltransferase; helix bundle, trimer, structural genomics, PSI, protein STRU initiative; 2.00A {Mycobacterium tuberculosis}
Probab=26.51 E-value=23 Score=28.19 Aligned_cols=23 Identities=13% Similarity=0.075 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcc
Q 037836 24 LAKVQVLEREISFLEEELKTVDR 46 (163)
Q Consensus 24 ~Aelq~LeqEI~fLEEEL~~LE~ 46 (163)
..+|++||++|..+.++|..|.+
T Consensus 94 ~~~v~~LE~~id~~~~~l~pl~~ 116 (193)
T 2g2d_A 94 QSYIDRLEGWCDAYNAGLPALKS 116 (193)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCSS
T ss_pred HHHHHHHHHHHHHHHhhCCCCCc
Confidence 58899999999999999988763
No 339
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=26.38 E-value=64 Score=28.19 Aligned_cols=15 Identities=27% Similarity=0.319 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHh
Q 037836 28 QVLEREISFLEEELK 42 (163)
Q Consensus 28 q~LeqEI~fLEEEL~ 42 (163)
+.|+++|+.++||++
T Consensus 56 ~~~~~~~~~~~~~i~ 70 (434)
T 4b4t_M 56 NVMLEKIKDNKEKIK 70 (434)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 340
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=26.23 E-value=58 Score=27.46 Aligned_cols=29 Identities=34% Similarity=0.576 Sum_probs=21.2
Q ss_pred chhhhHhH-HHHHHHHHHHHHHHHHHhhhc
Q 037836 17 LYGKRREL-AKVQVLEREISFLEEELKTVD 45 (163)
Q Consensus 17 ~~GKhR~~-Aelq~LeqEI~fLEEEL~~LE 45 (163)
+.++|+++ ..|..|||+=.|||.||..++
T Consensus 189 L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~ 218 (242)
T 3uux_B 189 LRQKKEKLLGKIANIEQNQLLLEDNLKQID 218 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34555544 568889999999999997664
No 341
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=26.15 E-value=85 Score=19.13 Aligned_cols=11 Identities=27% Similarity=0.434 Sum_probs=4.7
Q ss_pred HHHHHHHhhhc
Q 037836 35 SFLEEELKTVD 45 (163)
Q Consensus 35 ~fLEEEL~~LE 45 (163)
-.||+|..+||
T Consensus 18 yqleqevaqle 28 (33)
T 1fmh_A 18 YQLEQEVAQLE 28 (33)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 33444444443
No 342
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=26.15 E-value=63 Score=22.41 Aligned_cols=22 Identities=27% Similarity=0.262 Sum_probs=13.1
Q ss_pred hHhHHHHHHHHHHHHHHHHHHh
Q 037836 21 RRELAKVQVLEREISFLEEELK 42 (163)
Q Consensus 21 hR~~Aelq~LeqEI~fLEEEL~ 42 (163)
.|+.+.-+.||.+|.-|++.|+
T Consensus 66 ~~L~~~K~eLE~~l~el~~rl~ 87 (89)
T 3bas_A 66 EELLSKNYHLENEVARLKKLVG 87 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 4555555666666666666554
No 343
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=26.13 E-value=58 Score=22.24 Aligned_cols=18 Identities=11% Similarity=0.130 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHhhhc
Q 037836 28 QVLEREISFLEEELKTVD 45 (163)
Q Consensus 28 q~LeqEI~fLEEEL~~LE 45 (163)
+.|.+|+.-+.++++.||
T Consensus 12 qaLk~Ekdna~e~~e~lE 29 (75)
T 3mtu_A 12 QMLKLDKENALDRAEQAE 29 (75)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555555555555555
No 344
>1t3u_A Conserved hypothetical protein; NYSGXRC, unknown ORF, COG3027, PSI, protein structure initiative; 2.50A {Pseudomonas aeruginosa PAO1} SCOP: d.244.1.1 PDB: 1w2e_A
Probab=26.10 E-value=76 Score=21.93 Aligned_cols=17 Identities=6% Similarity=0.071 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHhh
Q 037836 27 VQVLEREISFLEEELKT 43 (163)
Q Consensus 27 lq~LeqEI~fLEEEL~~ 43 (163)
++.++++|..|.++|++
T Consensus 77 ~~~~~~~i~~L~~~le~ 93 (104)
T 1t3u_A 77 SSSTRERVRELLDRVDR 93 (104)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455555555555544
No 345
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=25.77 E-value=58 Score=27.90 Aligned_cols=14 Identities=21% Similarity=0.240 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHhh
Q 037836 30 LEREISFLEEELKT 43 (163)
Q Consensus 30 LeqEI~fLEEEL~~ 43 (163)
.+.+|..||+.|++
T Consensus 24 ~~~~i~~L~~~l~~ 37 (323)
T 1lwu_C 24 HDAQIQELSEMWRV 37 (323)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444443
No 346
>1zke_A Hypothetical protein HP1531; layer of helix-turn-helix, structural G PSI, protein structure initiative, midwest center for struc genomics; 1.60A {Helicobacter pylori} SCOP: a.30.6.1
Probab=25.60 E-value=32 Score=25.01 Aligned_cols=26 Identities=19% Similarity=0.291 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcccC
Q 037836 23 ELAKVQVLEREISFLEEELKTVDRFH 48 (163)
Q Consensus 23 ~~Aelq~LeqEI~fLEEEL~~LE~~~ 48 (163)
-++-+++++.|+.-|+|+++.|.++.
T Consensus 50 ~~~~~~QideeV~~LKe~IdaLNK~K 75 (83)
T 1zke_A 50 NEAFFTQLSEEVERLKELINALNKIK 75 (83)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35668999999999999999998765
No 347
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A {Mus musculus} SCOP: a.207.1.1
Probab=25.53 E-value=85 Score=25.88 Aligned_cols=23 Identities=9% Similarity=0.251 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhc
Q 037836 23 ELAKVQVLEREISFLEEELKTVD 45 (163)
Q Consensus 23 ~~Aelq~LeqEI~fLEEEL~~LE 45 (163)
++.+|+.|+++|..++.+|+.+.
T Consensus 215 l~~~l~~l~~~~~~~~~~l~~~~ 237 (340)
T 1v9d_A 215 LQKSLDQMKKQIADVERDVQNFP 237 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 34567777777777777776553
No 348
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=25.47 E-value=67 Score=22.67 Aligned_cols=26 Identities=15% Similarity=0.252 Sum_probs=21.8
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHhhhc
Q 037836 20 KRRELAKVQVLEREISFLEEELKTVD 45 (163)
Q Consensus 20 KhR~~Aelq~LeqEI~fLEEEL~~LE 45 (163)
|..++++|..-.+|+.-|+.||+.+-
T Consensus 69 R~~~~~klr~Yk~dL~~lk~elk~~~ 94 (102)
T 1vcs_A 69 RGMYSNRMRSYKQEMGKLETDFKRSR 94 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66888889999999988998888764
No 349
>1wvt_A Hypothetical protein ST2180; structural genomics, unknown function; 2.30A {Sulfolobus tokodaii}
Probab=25.34 E-value=23 Score=27.80 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhcc
Q 037836 25 AKVQVLEREISFLEEELKTVDR 46 (163)
Q Consensus 25 Aelq~LeqEI~fLEEEL~~LE~ 46 (163)
..|++||++|..+.++|..|.+
T Consensus 78 ~~v~~LE~~id~~~~~l~pl~~ 99 (172)
T 1wvt_A 78 EKVKGIEELITNYSKELEPLRN 99 (172)
T ss_dssp HHHHHHHHHHHHHHTTSCCCCS
T ss_pred HHHHHHHHHHHHHHhhCCCCcc
Confidence 7899999999999999987763
No 350
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=25.33 E-value=29 Score=28.29 Aligned_cols=39 Identities=18% Similarity=0.068 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhccc-CchhhhhHHHHHhh
Q 037836 23 ELAKVQVLEREISFLEEELKTVDRF-HPASRSCKEVADFV 61 (163)
Q Consensus 23 ~~Aelq~LeqEI~fLEEEL~~LE~~-~paS~~CKEv~~~V 61 (163)
+++|++.|+++|.-|++|+++.+.- .|-.+-..+|-..|
T Consensus 160 l~~En~~le~~Ie~Lk~e~~e~~te~~p~~k~~~qly~~v 199 (250)
T 2ve7_C 160 LNAAHQEALMKLERLEKEVDEDTTVTIPSAVYVAQLYHQV 199 (250)
T ss_dssp HHHHHHHHHHSCC-------------CTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH
Confidence 4455555555555555555555443 22233444444444
No 351
>2idx_A COB(I)yrinic acid A,C-diamide adenosyltransferase; ATP, cobalamin; HET: ATP; 2.50A {Homo sapiens}
Probab=25.26 E-value=30 Score=27.61 Aligned_cols=23 Identities=17% Similarity=0.159 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcc
Q 037836 24 LAKVQVLEREISFLEEELKTVDR 46 (163)
Q Consensus 24 ~Aelq~LeqEI~fLEEEL~~LE~ 46 (163)
...|++||++|..+.++|..|.+
T Consensus 93 ~~~v~~LE~~Id~~~~~lppl~~ 115 (196)
T 2idx_A 93 AGPILELEQWIDKYTSQLPPLTA 115 (196)
T ss_dssp SHHHHHHHHHHHHHHHTSCCCCS
T ss_pred HHHHHHHHHHHHHHHhhCCCCCc
Confidence 38899999999999999988763
No 352
>1ucv_A Ephrin type-A receptor 8; receptor oligomerization, developmental regulation, tyrosine kinase, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=25.24 E-value=46 Score=22.22 Aligned_cols=26 Identities=19% Similarity=0.390 Sum_probs=15.3
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHhhhcccCchh
Q 037836 19 GKRRELAKVQVLEREISFLEEELKTVDRFHPAS 51 (163)
Q Consensus 19 GKhR~~Aelq~LeqEI~fLEEEL~~LE~~~paS 51 (163)
=|+||+.+|+. |.+.+.+..+.+|.|
T Consensus 55 hrkkIl~ai~~-------l~~~~~~~~~~~~~~ 80 (81)
T 1ucv_A 55 HQKKILGSIQT-------MRAQLTSTQGSGPSS 80 (81)
T ss_dssp HHHHHHHHHHH-------HHHHHSCCSSCSSCC
T ss_pred HHHHHHHHHHH-------HHHHHhhcCCCCCCC
Confidence 34455555555 445556777777765
No 353
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=25.20 E-value=74 Score=20.66 Aligned_cols=20 Identities=30% Similarity=0.192 Sum_probs=11.8
Q ss_pred hHHHHHHHHHHHHHHHHHHh
Q 037836 23 ELAKVQVLEREISFLEEELK 42 (163)
Q Consensus 23 ~~Aelq~LeqEI~fLEEEL~ 42 (163)
.++.|..||.|+.-++.|++
T Consensus 5 ~q~~i~~le~el~~~r~e~~ 24 (59)
T 1gk6_A 5 LEDKVEELLSKNYHLENEVA 24 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666655543
No 354
>1wy1_A Hypothetical protein PH0671; structural genomics, riken structural genomics/proteomics in RSGI, transferase; 1.80A {Pyrococcus horikoshii}
Probab=25.18 E-value=27 Score=27.29 Aligned_cols=22 Identities=27% Similarity=0.283 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcc
Q 037836 24 LAKVQVLEREISFLEEELKTVDR 46 (163)
Q Consensus 24 ~Aelq~LeqEI~fLEEEL~~LE~ 46 (163)
...|++||++|..+.++|. |.+
T Consensus 81 ~~~v~~LE~~id~~~~~lp-l~~ 102 (172)
T 1wy1_A 81 EERIKWLEGLISRYEEMVN-LKS 102 (172)
T ss_dssp HHHHHHHHHHHHHHHTTCS-CCS
T ss_pred HHHHHHHHHHHHHHhhhCC-CcC
Confidence 5889999999999999988 763
No 355
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=25.17 E-value=58 Score=24.58 Aligned_cols=20 Identities=15% Similarity=0.099 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 037836 24 LAKVQVLEREISFLEEELKT 43 (163)
Q Consensus 24 ~Aelq~LeqEI~fLEEEL~~ 43 (163)
|.+++.|.+||.-++++|+.
T Consensus 44 q~~idelk~ei~q~~~~lE~ 63 (110)
T 2v4h_A 44 QELIDKLKEEAEQHKIVMET 63 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555544443
No 356
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=25.16 E-value=1e+02 Score=26.25 Aligned_cols=19 Identities=5% Similarity=0.153 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 037836 26 KVQVLEREISFLEEELKTV 44 (163)
Q Consensus 26 elq~LeqEI~fLEEEL~~L 44 (163)
+|+.|+..+..|+++|++|
T Consensus 19 ~i~~L~~~l~~~~~ki~~L 37 (319)
T 1fzc_C 19 SIRYLQEIYNSNNQKIVNL 37 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433
No 357
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=25.05 E-value=26 Score=25.93 Aligned_cols=43 Identities=14% Similarity=0.236 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccCchhhhhHHHHHhhhhcCCCCcccc
Q 037836 24 LAKVQVLEREISFLEEELKTVDRFHPASRSCKEVADFVVAKSDPLIPVN 72 (163)
Q Consensus 24 ~Aelq~LeqEI~fLEEEL~~LE~~~paS~~CKEv~~~Ves~pDPLLP~t 72 (163)
|+.|+.|+.||...|..|- .|..-.++-..-+|..||.+.=.+
T Consensus 4 M~~i~eLq~e~~~~E~QL~------~A~QKLkdA~~~~e~DPDevNk~~ 46 (96)
T 2ic9_A 4 MSTLKEVQDNITLHEQRLV------TTRQKLKDAERAVELDPDDVNKST 46 (96)
T ss_dssp CCTHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcCCCcHHHHHH
Confidence 4455666666655555543 244466777888888898765433
No 358
>3h6p_C ESAT-6-like protein ESXR; four-helix bundle, structural genomics, PSI-2, protein struc initiative, TB structural genomics consortium; 1.91A {Mycobacterium tuberculosis} PDB: 2kg7_B 3q4h_B
Probab=25.04 E-value=23 Score=23.59 Aligned_cols=22 Identities=9% Similarity=-0.065 Sum_probs=10.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhhh
Q 037836 23 ELAKVQVLEREISFLEEELKTV 44 (163)
Q Consensus 23 ~~Aelq~LeqEI~fLEEEL~~L 44 (163)
+....++|+.++.-|+.+|+.|
T Consensus 18 i~~~~~~i~~~l~~l~~~v~~L 39 (96)
T 3h6p_C 18 MAGYAGTLQSLGADIASEQAVL 39 (96)
T ss_dssp --CHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455555555555555555
No 359
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=25.03 E-value=65 Score=20.85 Aligned_cols=18 Identities=28% Similarity=0.545 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 037836 25 AKVQVLEREISFLEEELK 42 (163)
Q Consensus 25 Aelq~LeqEI~fLEEEL~ 42 (163)
|||+.|..-++|-+.||+
T Consensus 20 aelknlkehlkfakaele 37 (46)
T 3he4_B 20 AELKNLKEHLKFAKAELE 37 (46)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHH
Confidence 555555555555555554
No 360
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=24.98 E-value=59 Score=22.54 Aligned_cols=27 Identities=11% Similarity=0.250 Sum_probs=16.8
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHhhhc
Q 037836 19 GKRRELAKVQVLEREISFLEEELKTVD 45 (163)
Q Consensus 19 GKhR~~Aelq~LeqEI~fLEEEL~~LE 45 (163)
+-.|...+++.++.|+.-|++.|+..|
T Consensus 8 ~~~~~eeEm~~~eeel~~lke~l~k~e 34 (89)
T 3bas_A 8 SIARQEEEMKEQLKQMDKMKEDLAKTE 34 (89)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777777777665444
No 361
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=24.91 E-value=83 Score=20.61 Aligned_cols=22 Identities=5% Similarity=0.042 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhh
Q 037836 23 ELAKVQVLEREISFLEEELKTV 44 (163)
Q Consensus 23 ~~Aelq~LeqEI~fLEEEL~~L 44 (163)
+-.+|+.|..+|.-|+.+...|
T Consensus 9 Lss~V~~L~~kVdqLssdV~al 30 (52)
T 1jcd_A 9 ASSDAQTANAKADQASNDANAA 30 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666655544
No 362
>1r8i_A TRAC; VIRB5, helical bundle, structural protein; 3.00A {Escherichia coli} SCOP: a.8.7.1
Probab=24.91 E-value=67 Score=25.07 Aligned_cols=26 Identities=4% Similarity=0.148 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccCc
Q 037836 24 LAKVQVLEREISFLEEELKTVDRFHP 49 (163)
Q Consensus 24 ~Aelq~LeqEI~fLEEEL~~LE~~~p 49 (163)
...|++|.++|.-++..|++|.|.-.
T Consensus 21 ~~Ql~~~k~Ql~q~k~qy~sltG~r~ 46 (213)
T 1r8i_A 21 AQQLEQLKSQLETQKNMYESMAKTTN 46 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCccc
Confidence 34456677777777778888777543
No 363
>4aj5_1 SKA3, spindle and kinetochore-associated protein 3; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=24.86 E-value=78 Score=23.59 Aligned_cols=36 Identities=22% Similarity=0.336 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCchhhhhHHHHHhhhh
Q 037836 26 KVQVLEREISFLEEELKTVDRFHPASRSCKEVADFVVA 63 (163)
Q Consensus 26 elq~LeqEI~fLEEEL~~LE~~~paS~~CKEv~~~Ves 63 (163)
.+..|+-||+-|++.++.+ ++.++.-=+|+.+|+.+
T Consensus 43 ilhdl~seV~~LK~dv~~~--L~k~~~e~qe~~~FIKa 78 (101)
T 4aj5_1 43 ILYDLHSEVQTLKDDINIL--LDKARLENQEGIDFIKA 78 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHhhHHHHHHHH
Confidence 3555555666666555543 23333333555555543
No 364
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=24.75 E-value=84 Score=21.61 Aligned_cols=23 Identities=13% Similarity=0.174 Sum_probs=15.0
Q ss_pred hHhHHHHHHHHHHHHHHHHHHhh
Q 037836 21 RRELAKVQVLEREISFLEEELKT 43 (163)
Q Consensus 21 hR~~Aelq~LeqEI~fLEEEL~~ 43 (163)
...++.|..||.|+..++.|++.
T Consensus 8 ~~~~~~i~~lE~eL~~~r~e~~~ 30 (74)
T 2xv5_A 8 DTSRRLLAEKEREMAEMRARMQQ 30 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777777666543
No 365
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=24.73 E-value=73 Score=28.87 Aligned_cols=44 Identities=16% Similarity=0.213 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccCch-----hhhhHHHHHhhhhcCCC
Q 037836 24 LAKVQVLEREISFLEEELKTVDRFHPA-----SRSCKEVADFVVAKSDP 67 (163)
Q Consensus 24 ~Aelq~LeqEI~fLEEEL~~LE~~~pa-----S~~CKEv~~~Ves~pDP 67 (163)
..|+..|++|+.-|++|+++|+.+-.. ...=+|+.+..+.=.||
T Consensus 415 ~le~~kl~~E~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~i~~~yg~~ 463 (470)
T 3ilw_A 415 ALERQRIIDDLAKIEAEIADLEDILAKPERQRGIVRDELAEIVDRHGDD 463 (470)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 356777777777777777777776322 12446666666655554
No 366
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=24.72 E-value=67 Score=19.81 Aligned_cols=23 Identities=13% Similarity=0.104 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcc
Q 037836 24 LAKVQVLEREISFLEEELKTVDR 46 (163)
Q Consensus 24 ~Aelq~LeqEI~fLEEEL~~LE~ 46 (163)
-.+|..|-+++..||.|...|-+
T Consensus 6 EdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 6 EDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHH
Confidence 35566777777777777766643
No 367
>1c94_A Retro-GCN4 leucine zipper; retro-coiled coil, 4-alpha-helix-bundle, peptide synthesis, gene regulation; 2.08A {Synthetic} SCOP: k.11.1.1
Probab=24.61 E-value=85 Score=19.64 Aligned_cols=30 Identities=30% Similarity=0.540 Sum_probs=18.6
Q ss_pred hhhHhHHHHHHHHHHH----HHHHHHHhhhcccC
Q 037836 19 GKRRELAKVQVLEREI----SFLEEELKTVDRFH 48 (163)
Q Consensus 19 GKhR~~Aelq~LeqEI----~fLEEEL~~LE~~~ 48 (163)
||.-.+.+|..+|+|+ ++|||--++|.+|.
T Consensus 3 gregvlkklravenelhynkslleevkdelqkmr 36 (38)
T 1c94_A 3 GREGVLKKLRAVENELHYNKSLLEEVKDELQKMR 36 (38)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 5555666777777776 45665555666653
No 368
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=24.51 E-value=79 Score=21.91 Aligned_cols=18 Identities=17% Similarity=0.086 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 037836 27 VQVLEREISFLEEELKTV 44 (163)
Q Consensus 27 lq~LeqEI~fLEEEL~~L 44 (163)
|+.|+++..-|++|++.|
T Consensus 54 I~~L~~~~~~l~~~~~~L 71 (88)
T 1nkp_A 54 ILSVQAEEQKLISEEDLL 71 (88)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444433
No 369
>3n1e_A Vacuolar protein sorting-associated protein 54; spinal muscular atrophy, vesicle trafficking, golgi apparatu tethering complex, GARP.; 1.70A {Mus musculus} PDB: 3n1b_A
Probab=24.45 E-value=56 Score=25.06 Aligned_cols=21 Identities=10% Similarity=0.368 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHhhhcccCch
Q 037836 30 LEREISFLEEELKTVDRFHPA 50 (163)
Q Consensus 30 LeqEI~fLEEEL~~LE~~~pa 50 (163)
+-+|+.|.++.|+.|+|++.+
T Consensus 112 v~~Dv~ff~~~L~~L~g~~d~ 132 (141)
T 3n1e_A 112 VTADVAFYTGNLQALKGLKDL 132 (141)
T ss_dssp HHHHHHHHHHHHHTSTTCTTC
T ss_pred HHHHHHHHHHHhcccCCCCcc
Confidence 568999999999999998763
No 370
>3g9r_A Fusion complex of HIV-1 envelope glycoprotein and saccharomyces cerevisiae general...; GP41, MPER, membrane fusion, AIDS; 2.00A {Human immunodeficiency virus 1}
Probab=24.35 E-value=59 Score=20.94 Aligned_cols=15 Identities=27% Similarity=0.357 Sum_probs=9.6
Q ss_pred hHHHHHHHHHHHHHH
Q 037836 23 ELAKVQVLEREISFL 37 (163)
Q Consensus 23 ~~Aelq~LeqEI~fL 37 (163)
|..+|+++|+||+-+
T Consensus 26 Mv~~~~~~~~~~~~~ 40 (42)
T 3g9r_A 26 LKSKIKRIENEIKRI 40 (42)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 445677777777654
No 371
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=24.33 E-value=60 Score=22.91 Aligned_cols=13 Identities=31% Similarity=0.353 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHh
Q 037836 30 LEREISFLEEELK 42 (163)
Q Consensus 30 LeqEI~fLEEEL~ 42 (163)
|+-||.-|+++++
T Consensus 75 l~~e~dnl~~~~~ 87 (93)
T 3s4r_A 75 VEVERDNLAEDIM 87 (93)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333444444433
No 372
>2zhy_A ATP:COB(I)alamin adenosyltransferase, putative; helix bundle; 1.80A {Burkholderia thailandensis} PDB: 2zhz_A*
Probab=24.18 E-value=34 Score=26.97 Aligned_cols=22 Identities=14% Similarity=0.208 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc
Q 037836 24 LAKVQVLEREISFLEEELKTVD 45 (163)
Q Consensus 24 ~Aelq~LeqEI~fLEEEL~~LE 45 (163)
...|+.||++|..++++|..|.
T Consensus 86 ~~~v~~LE~~id~~~~~l~pl~ 107 (183)
T 2zhy_A 86 DAHLARLDGWLAHYNGQLPPLE 107 (183)
T ss_dssp HHHHHHHHHHHHHHHHTSCCCC
T ss_pred HHHHHHHHHHHHHHHhhCCCCc
Confidence 4778999999999999987765
No 373
>3msx_B RHO GTPase-activating protein 20; protein-proten complex, transition state, protein BI; HET: GDP; 1.65A {Homo sapiens}
Probab=24.13 E-value=1.3e+02 Score=22.49 Aligned_cols=13 Identities=15% Similarity=0.340 Sum_probs=6.6
Q ss_pred HhhhhcCCCCccc
Q 037836 59 DFVVAKSDPLIPV 71 (163)
Q Consensus 59 ~~Ves~pDPLLP~ 71 (163)
.|...-||||||.
T Consensus 86 ~flreLp~pLl~~ 98 (201)
T 3msx_B 86 DFLRNIPGSIFSS 98 (201)
T ss_dssp HHHHTSTTTTTTG
T ss_pred HHHHhCCCCCCCH
Confidence 3444455555553
No 374
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=24.10 E-value=71 Score=27.90 Aligned_cols=17 Identities=24% Similarity=0.374 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHhhhcc
Q 037836 30 LEREISFLEEELKTVDR 46 (163)
Q Consensus 30 LeqEI~fLEEEL~~LE~ 46 (163)
|++|...++|||+.|..
T Consensus 84 l~~~~~~~~~~~~~l~~ 100 (437)
T 4b4t_L 84 LEKLYDKTENDIKALQS 100 (437)
T ss_dssp HHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 33334444444444443
No 375
>2rkh_A Putative APHA-like transcription factor; ZP_00208345.1, STRU genomics, joint center for structural genomics, JCSG; 2.00A {Magnetospirillum magnetotacticum}
Probab=23.92 E-value=41 Score=26.09 Aligned_cols=26 Identities=12% Similarity=0.170 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccCc
Q 037836 24 LAKVQVLEREISFLEEELKTVDRFHP 49 (163)
Q Consensus 24 ~Aelq~LeqEI~fLEEEL~~LE~~~p 49 (163)
...+..|++-|..||++|++++++..
T Consensus 121 e~~~~~L~~r~~~l~~~l~~~~~~~~ 146 (180)
T 2rkh_A 121 EERAHQIDLLIEGVDSELARLADLRG 146 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567889999999999999887653
No 376
>3mxz_A Tubulin-specific chaperone A; helix bundle; 1.60A {Arabidopsis thaliana}
Probab=23.80 E-value=33 Score=25.52 Aligned_cols=40 Identities=20% Similarity=0.173 Sum_probs=18.6
Q ss_pred hhHhHHHHHHHHHHHHHHHH-HHhhhcccCchhhhhHHHHHhhhh
Q 037836 20 KRRELAKVQVLEREISFLEE-ELKTVDRFHPASRSCKEVADFVVA 63 (163)
Q Consensus 20 KhR~~Aelq~LeqEI~fLEE-EL~~LE~~~paS~~CKEv~~~Ves 63 (163)
++|++++++.|++-|...++ ++..-|-+. .=+++++.++.
T Consensus 69 ~~RL~~a~~~L~~~l~~~~~~~~~~~ee~~----~Ak~~l~~ae~ 109 (116)
T 3mxz_A 69 HKRLESALADLKSTLAELEETDEKEGPEIE----DAKKTVADVEK 109 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC-CCCCHHHH----HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCChHHHH----HHHHHHHHHHH
Confidence 45666666666654443321 222222222 33666666554
No 377
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=23.80 E-value=66 Score=22.86 Aligned_cols=24 Identities=25% Similarity=0.248 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccC
Q 037836 25 AKVQVLEREISFLEEELKTVDRFH 48 (163)
Q Consensus 25 Aelq~LeqEI~fLEEEL~~LE~~~ 48 (163)
+++++|+.+|.-+++=++.|+.+.
T Consensus 22 ~~~~~l~~~i~e~~~~~e~l~~l~ 45 (133)
T 1fxk_C 22 QQMEAVRATISELEILEKTLSDIQ 45 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334444444444444444444433
No 378
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=23.70 E-value=71 Score=25.35 Aligned_cols=36 Identities=22% Similarity=0.274 Sum_probs=21.6
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHhhhcccCchhhhhHHHHHhhh
Q 037836 20 KRRELAKVQVLEREISFLEEELKTVDRFHPASRSCKEVADFVV 62 (163)
Q Consensus 20 KhR~~Aelq~LeqEI~fLEEEL~~LE~~~paS~~CKEv~~~Ve 62 (163)
++|++++++..|.|-.-|++.. ++| ||. .||.+||.
T Consensus 130 ~~~L~~a~~e~eeeS~~l~~~F--~~~---~~e--~dv~~Fl~ 165 (192)
T 2p22_C 130 KKKLEQNTKKLDEESSQLETTT--RSI---DSA--DDLDQFIK 165 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSC--SCC---CCH--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--cCC---ccc--chHHHHHH
Confidence 5677777777777777666655 222 222 46666664
No 379
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=23.53 E-value=57 Score=21.74 Aligned_cols=25 Identities=28% Similarity=0.513 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCch
Q 037836 26 KVQVLEREISFLEEELKTVDRFHPA 50 (163)
Q Consensus 26 elq~LeqEI~fLEEEL~~LE~~~pa 50 (163)
++..||++++-.+..++.||.-.|-
T Consensus 15 k~eeler~lrk~kk~iKklEdeNPW 39 (50)
T 1a92_A 15 KLEELERDLRKLKKKIKKLEEDNPW 39 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHhhhccCCc
Confidence 3567888888888888888865553
No 380
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=23.50 E-value=47 Score=23.97 Aligned_cols=21 Identities=5% Similarity=0.173 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHhhhccc
Q 037836 27 VQVLEREISFLEEELKTVDRF 47 (163)
Q Consensus 27 lq~LeqEI~fLEEEL~~LE~~ 47 (163)
++.|++++..|++++++|+.+
T Consensus 81 ~~~l~~~~~~l~~~i~~L~~~ 101 (135)
T 1q06_A 81 KRRTLEKVAEIERHIEELQSM 101 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777777777654
No 381
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=23.46 E-value=68 Score=23.57 Aligned_cols=21 Identities=19% Similarity=0.414 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhc
Q 037836 25 AKVQVLEREISFLEEELKTVD 45 (163)
Q Consensus 25 Aelq~LeqEI~fLEEEL~~LE 45 (163)
.+++.|++.|.+|++.|+.|+
T Consensus 98 eA~~~l~~ri~~l~~~l~~l~ 118 (151)
T 2zdi_C 98 EAISFLEKRLKEYDEAIKKTQ 118 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555444
No 382
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=23.41 E-value=85 Score=27.93 Aligned_cols=25 Identities=12% Similarity=0.207 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhccc
Q 037836 23 ELAKVQVLEREISFLEEELKTVDRF 47 (163)
Q Consensus 23 ~~Aelq~LeqEI~fLEEEL~~LE~~ 47 (163)
|+.|+++||.-|.-.+..|.+|+++
T Consensus 89 ml~~~~~~~~~~~~~~~~i~~l~~~ 113 (411)
T 3ghg_C 89 MLEEIMKYEASILTHDSSIRYLQEI 113 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 6667766666665555555555443
No 383
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=23.33 E-value=65 Score=27.99 Aligned_cols=18 Identities=28% Similarity=0.136 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 037836 27 VQVLEREISFLEEELKTV 44 (163)
Q Consensus 27 lq~LeqEI~fLEEEL~~L 44 (163)
++.|+++|..+++|++++
T Consensus 19 ~~~l~~~~~~~~~~~~~~ 36 (412)
T 3u06_A 19 TEELLRCNEQQAAELETC 36 (412)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444433
No 384
>1buu_A Protein (mannose-binding protein A); lectin, HOST defense, metalloprotein, sugar binding protein; 1.90A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1
Probab=23.31 E-value=68 Score=23.05 Aligned_cols=18 Identities=11% Similarity=0.220 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 037836 23 ELAKVQVLEREISFLEEE 40 (163)
Q Consensus 23 ~~Aelq~LeqEI~fLEEE 40 (163)
++.+|+.|++++..|++-
T Consensus 28 L~~~~~~L~~~l~~l~~~ 45 (168)
T 1buu_A 28 MEAEINTLKSKLELTNKL 45 (168)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 448999999999999863
No 385
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=23.31 E-value=60 Score=25.28 Aligned_cols=18 Identities=44% Similarity=0.532 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 037836 26 KVQVLEREISFLEEELKT 43 (163)
Q Consensus 26 elq~LeqEI~fLEEEL~~ 43 (163)
.|++||++|.-||++|..
T Consensus 99 sv~kLEk~id~lEd~L~~ 116 (155)
T 2efr_A 99 SVTKLEKSIDDLEDELYA 116 (155)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 467788888888887764
No 386
>4h9n_C Death domain-associated protein 6; histone chaperone, DNA binding protein-apoptosis complex; 1.95A {Homo sapiens} PDB: 4h9o_C
Probab=23.28 E-value=52 Score=27.10 Aligned_cols=21 Identities=24% Similarity=0.189 Sum_probs=12.2
Q ss_pred hhHhHHHHHHHHHHHHHHHHH
Q 037836 20 KRRELAKVQVLEREISFLEEE 40 (163)
Q Consensus 20 KhR~~Aelq~LeqEI~fLEEE 40 (163)
.+|+.-.|++++++|+-|||.
T Consensus 11 I~~le~~l~~~~k~Ik~LEe~ 31 (212)
T 4h9n_C 11 IQRLEQLLALYVAEIRRLQEK 31 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 344444556666677776654
No 387
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=23.24 E-value=56 Score=23.52 Aligned_cols=23 Identities=13% Similarity=0.118 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcc
Q 037836 24 LAKVQVLEREISFLEEELKTVDR 46 (163)
Q Consensus 24 ~Aelq~LeqEI~fLEEEL~~LE~ 46 (163)
..+|..+.++|..|+.||..++.
T Consensus 61 ~~~L~e~~~kid~L~~el~K~q~ 83 (98)
T 2ke4_A 61 EPQIAETLSNIERLKLEVQKYEA 83 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777888888888776654
No 388
>3qao_A LMO0526 protein, MERR-like transcriptional regulator; structural genomics, the center for structural genomics of I diseases, csgid; 1.87A {Listeria monocytogenes}
Probab=23.20 E-value=70 Score=25.59 Aligned_cols=19 Identities=16% Similarity=0.275 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHhhhcc
Q 037836 28 QVLEREISFLEEELKTVDR 46 (163)
Q Consensus 28 q~LeqEI~fLEEEL~~LE~ 46 (163)
+.|++++..|++++++|+.
T Consensus 79 ~~L~~~~~~L~~~~~~L~~ 97 (249)
T 3qao_A 79 VALDMQRHLLIEKKQRIET 97 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555555544443
No 389
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=23.17 E-value=94 Score=30.86 Aligned_cols=47 Identities=6% Similarity=0.065 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcccCchhhhhHHHHHhhhhcCCCCccc
Q 037836 23 ELAKVQVLEREISFLEEELKTVDRFHPASRSCKEVADFVVAKSDPLIPV 71 (163)
Q Consensus 23 ~~Aelq~LeqEI~fLEEEL~~LE~~~paS~~CKEv~~~Ves~pDPLLP~ 71 (163)
++.+|++|+.++.||++=++. .+.-+-+-=.||++-+.+..+|-.+-
T Consensus 1016 l~~~l~k~~~r~~fi~~vi~~--~L~i~~~~~devI~~Lr~~~~~~~ak 1062 (1177)
T 4gfh_A 1016 LQWEVEKYSFQVKFIKMIIEK--ELTVTNKPRNAIIQELENLGFPRFNK 1062 (1177)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT--SCCCSSSCHHHHHHHHHHTTCCEECS
T ss_pred HHHHHHHHHHHHHHHHHhhcC--eEEEecCCHHHHHHHHHHCCCcccch
Confidence 455555555555555542221 14445555678888888877765553
No 390
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=23.17 E-value=84 Score=22.88 Aligned_cols=27 Identities=11% Similarity=0.215 Sum_probs=19.1
Q ss_pred hHhHHHHHHHHHHHHHHHHHHhhhccc
Q 037836 21 RRELAKVQVLEREISFLEEELKTVDRF 47 (163)
Q Consensus 21 hR~~Aelq~LeqEI~fLEEEL~~LE~~ 47 (163)
.|+++.-..|+..|.-|++.|++.|..
T Consensus 72 ~~L~~~k~eLe~~l~el~~rleeeee~ 98 (129)
T 2fxo_A 72 DQLIKNKIQLEAKVKEMNKRLEDEEEM 98 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666777778887777777776543
No 391
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=23.07 E-value=76 Score=20.43 Aligned_cols=15 Identities=40% Similarity=0.461 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHH
Q 037836 26 KVQVLEREISFLEEE 40 (163)
Q Consensus 26 elq~LeqEI~fLEEE 40 (163)
....||..|++||-|
T Consensus 18 ~naeLEervstLq~E 32 (42)
T 2oqq_A 18 KNSELEERLSTLQNE 32 (42)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 344455555555544
No 392
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=23.06 E-value=80 Score=20.02 Aligned_cols=19 Identities=32% Similarity=0.382 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHhhhc
Q 037836 27 VQVLEREISFLEEELKTVD 45 (163)
Q Consensus 27 lq~LeqEI~fLEEEL~~LE 45 (163)
-..||+.|.-||.-|+.|.
T Consensus 18 ~e~LE~Ri~~LE~KLd~L~ 36 (43)
T 2pnv_A 18 SEDFEKRIVTLETKLETLI 36 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3457777777777776664
No 393
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=22.97 E-value=77 Score=20.91 Aligned_cols=26 Identities=31% Similarity=0.291 Sum_probs=17.0
Q ss_pred CCchhhhHhHHHHHHHHHHHHHHHHHH
Q 037836 15 PDLYGKRRELAKVQVLEREISFLEEEL 41 (163)
Q Consensus 15 pD~~GKhR~~Aelq~LeqEI~fLEEEL 41 (163)
-|++|.+...| ++.|++.|....+++
T Consensus 3 lDLHGl~v~eA-~~~l~~~l~~~~~~~ 28 (82)
T 3fau_A 3 LDLHGLHVDEA-LEHLMRVLEKKTEEF 28 (82)
T ss_dssp EECTTSCHHHH-HHHHHHHHHHHHHHH
T ss_pred EECCCCcHHHH-HHHHHHHHHHHHHHh
Confidence 48899887776 467776555544443
No 394
>1wmi_B RELB, hypothetical protein PHS014; toxin-antitoxin complex, hydrolase-hydrolase inhibitor compl; 2.30A {Pyrococcus horikoshii} SCOP: a.137.13.1
Probab=22.93 E-value=64 Score=22.51 Aligned_cols=24 Identities=33% Similarity=0.362 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcc
Q 037836 23 ELAKVQVLEREISFLEEELKTVDR 46 (163)
Q Consensus 23 ~~Aelq~LeqEI~fLEEEL~~LE~ 46 (163)
++.||.+|..||+-||.=|--++.
T Consensus 9 vl~ELeRlkveiQRLE~ml~p~~~ 32 (67)
T 1wmi_B 9 VLKELERLKVEIQRLEAMLMPEER 32 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCBCC
T ss_pred HHHHHHHHHHHHHHHHHHhccccC
Confidence 677888888888888765543333
No 395
>3fk2_A Glucocorticoid receptor DNA-binding factor 1; structural genomics consortium, GTPase-activating protein, SGC, alternative splicing, anti-oncogene; 2.80A {Homo sapiens}
Probab=22.88 E-value=1.1e+02 Score=23.91 Aligned_cols=19 Identities=26% Similarity=0.534 Sum_probs=11.6
Q ss_pred hhHHHHHhhhhcCCCCccc
Q 037836 53 SCKEVADFVVAKSDPLIPV 71 (163)
Q Consensus 53 ~CKEv~~~Ves~pDPLLP~ 71 (163)
+.-=+-.|...-||||||.
T Consensus 124 va~lLK~fLReLPePLl~~ 142 (246)
T 3fk2_A 124 VAGAMKSFFSELPDPLVPY 142 (246)
T ss_dssp HHHHHHHHHHHSSSCSSCH
T ss_pred HHHHHHHHHHhCCCccCCH
Confidence 3333445666778888874
No 396
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=22.82 E-value=35 Score=25.36 Aligned_cols=20 Identities=15% Similarity=0.220 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 037836 25 AKVQVLEREISFLEEELKTV 44 (163)
Q Consensus 25 Aelq~LeqEI~fLEEEL~~L 44 (163)
.||+.|++||..+|...+.|
T Consensus 4 ~e~~~l~~qi~~~ekr~~RL 23 (123)
T 4dzo_A 4 KEVAELKKQVESAELKNQRL 23 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35566666665555544444
No 397
>1ydx_A Type I restriction enzyme specificity protein Mg4; type-I HSDS, DNA binding protein; 2.30A {Mycoplasma genitalium} SCOP: d.287.1.2 d.287.1.2
Probab=22.82 E-value=48 Score=26.54 Aligned_cols=35 Identities=6% Similarity=0.126 Sum_probs=27.6
Q ss_pred CchhhhHhHHHHHHHHHHHHHHHHHHhhhcccCch
Q 037836 16 DLYGKRRELAKVQVLEREISFLEEELKTVDRFHPA 50 (163)
Q Consensus 16 D~~GKhR~~Aelq~LeqEI~fLEEEL~~LE~~~pa 50 (163)
.+-=-+||.+.|+.+++.|..+|+.++.|+.+..+
T Consensus 165 ~l~eQ~~I~~~l~~~d~~i~~~~~~~~~l~~~k~~ 199 (406)
T 1ydx_A 165 NKNEQHAIANTLSVFDERLENLASLIEINRKLRDE 199 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556788888999999999999888888765543
No 398
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=22.79 E-value=55 Score=25.21 Aligned_cols=24 Identities=21% Similarity=0.219 Sum_probs=17.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhhc
Q 037836 22 RELAKVQVLEREISFLEEELKTVD 45 (163)
Q Consensus 22 R~~Aelq~LeqEI~fLEEEL~~LE 45 (163)
+++.+++.|.+|+.-|+++|++..
T Consensus 8 ~~~~~~~~~~~~~~~l~~~~~~~~ 31 (354)
T 2pbi_B 8 HENETLASLKSEAESLKGKLEEER 31 (354)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 356678888889988888887764
No 399
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=22.77 E-value=83 Score=22.92 Aligned_cols=24 Identities=25% Similarity=0.302 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccc
Q 037836 24 LAKVQVLEREISFLEEELKTVDRF 47 (163)
Q Consensus 24 ~Aelq~LeqEI~fLEEEL~~LE~~ 47 (163)
..||..|.+.|+.|+-||+++.++
T Consensus 37 k~Ei~elrr~iq~L~~el~~l~~~ 60 (131)
T 3tnu_A 37 KSEISELRRTMQNLEIELQSQLSM 60 (131)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 346777777778888777777655
No 400
>2d9i_A NEDD4-binding protein 2; SMR domain, N4BP2, BCL-3 binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.68.8.1
Probab=22.73 E-value=75 Score=21.55 Aligned_cols=31 Identities=29% Similarity=0.227 Sum_probs=21.1
Q ss_pred CCCCCCCCchhhhHhHHHHHHHHHHHHHHHHH
Q 037836 9 KSPPEYPDLYGKRRELAKVQVLEREISFLEEE 40 (163)
Q Consensus 9 KsPP~~pD~~GKhR~~Aelq~LeqEI~fLEEE 40 (163)
+++...-|++|.+..+| ++.|++-|....++
T Consensus 5 ~~~~~~lDLHGl~v~eA-~~~L~~~L~~~~~~ 35 (96)
T 2d9i_A 5 SSGQNVLDLHGLHVDEA-LEHLMRVLEKKTEE 35 (96)
T ss_dssp CCSCCEEECTTSCHHHH-HHHHHHHHHHHHHH
T ss_pred CCCCCeEECCCCCHHHH-HHHHHHHHHHHHHH
Confidence 35566679999988766 57777666554433
No 401
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=22.54 E-value=68 Score=24.56 Aligned_cols=27 Identities=30% Similarity=0.430 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccCch
Q 037836 24 LAKVQVLEREISFLEEELKTVDRFHPA 50 (163)
Q Consensus 24 ~Aelq~LeqEI~fLEEEL~~LE~~~pa 50 (163)
+-+|..|+.+|.-||.||+.+|.+..|
T Consensus 67 ~~ki~eL~~kvA~le~e~~~~e~~~~~ 93 (125)
T 2pms_C 67 SDKIDELDAEIAKLEDQLKAAEENNNV 93 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCC----
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 335677889999999999988875443
No 402
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=22.50 E-value=88 Score=24.79 Aligned_cols=32 Identities=28% Similarity=0.386 Sum_probs=25.2
Q ss_pred CCchhhhHhHHHHHHHHHHHHHHHHHHhhhccc
Q 037836 15 PDLYGKRRELAKVQVLEREISFLEEELKTVDRF 47 (163)
Q Consensus 15 pD~~GKhR~~Aelq~LeqEI~fLEEEL~~LE~~ 47 (163)
+++-|.-| +.+|+.++.||.-|.+++++-|..
T Consensus 120 ~~Lsg~er-~ekL~~~~~ei~e~~k~~~e~~~~ 151 (161)
T 2ynq_A 120 TDLSGDEK-QKKLDEIDQEIKEYERERKESEAQ 151 (161)
T ss_dssp SSSCHHHH-HHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCChHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666 578999999999999999886543
No 403
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=22.48 E-value=78 Score=25.42 Aligned_cols=9 Identities=22% Similarity=0.091 Sum_probs=4.4
Q ss_pred HHHHHhhhh
Q 037836 55 KEVADFVVA 63 (163)
Q Consensus 55 KEv~~~Ves 63 (163)
+++.+||.+
T Consensus 160 ~qlE~~v~~ 168 (213)
T 1ik9_A 160 GRFEKAVSA 168 (213)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 445555544
No 404
>3lbx_A Spectrin alpha chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} PDB: 1owa_A
Probab=22.47 E-value=75 Score=23.23 Aligned_cols=36 Identities=19% Similarity=0.247 Sum_probs=29.6
Q ss_pred CCCCchhhhHhHHHHHHHHHHHHHHHHHHhhhcccC
Q 037836 13 EYPDLYGKRRELAKVQVLEREISFLEEELKTVDRFH 48 (163)
Q Consensus 13 ~~pD~~GKhR~~Aelq~LeqEI~fLEEEL~~LE~~~ 48 (163)
.|-|+.+-++++.+-+.++.||.--++-+++|...+
T Consensus 83 ~~~d~~~v~~ll~kH~afe~El~a~~~~~~~l~~~g 118 (161)
T 3lbx_A 83 SYEDPTNIQGKYQKHQSLEAEVQTKSRLMSELEKTR 118 (161)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888889999999999999999888888876543
No 405
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=22.45 E-value=61 Score=31.93 Aligned_cols=30 Identities=30% Similarity=0.461 Sum_probs=24.0
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHHHhhhccc
Q 037836 18 YGKRRELAKVQVLEREISFLEEELKTVDRF 47 (163)
Q Consensus 18 ~GKhR~~Aelq~LeqEI~fLEEEL~~LE~~ 47 (163)
+|-.-...++++|.|+|+.+|+||+.+|..
T Consensus 402 lG~~~~~~~~~~l~~~i~~~~~~l~~~~~~ 431 (968)
T 3m62_A 402 YGLGGTLSFEEKMGSEIKALKEEIEKVKKI 431 (968)
T ss_dssp HTHHHHHHHHHTHHHHHHHHHHHHHHHTTC
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 577777777888888888888888888854
No 406
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=22.37 E-value=65 Score=28.18 Aligned_cols=22 Identities=27% Similarity=0.206 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhh
Q 037836 23 ELAKVQVLEREISFLEEELKTV 44 (163)
Q Consensus 23 ~~Aelq~LeqEI~fLEEEL~~L 44 (163)
..+||+.|+.++..||+||+.|
T Consensus 74 a~~e~~~l~~~~~~le~~l~~l 95 (354)
T 3d5a_X 74 AKAEREALLARKEALEKELERH 95 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
No 407
>1rh4_A Right-handed coiled coil tetramer; de novo design; 1.90A {Synthetic construct} SCOP: k.17.1.1
Probab=22.21 E-value=62 Score=19.96 Aligned_cols=16 Identities=31% Similarity=0.461 Sum_probs=11.0
Q ss_pred hhHhHHHHHHHHHHHH
Q 037836 20 KRRELAKVQVLEREIS 35 (163)
Q Consensus 20 KhR~~Aelq~LeqEI~ 35 (163)
|-.++|+++.+.|||.
T Consensus 19 kaeilaalkkikqeia 34 (35)
T 1rh4_A 19 KAEILAALKKIKQEIA 34 (35)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhc
Confidence 3456777788877773
No 408
>1qsd_A Protein (beta-tubulin binding post-chaperonin cofactor); four-helix-bundle, chaperone; 2.20A {Saccharomyces cerevisiae} SCOP: a.7.5.1
Probab=22.21 E-value=1.2e+02 Score=21.99 Aligned_cols=9 Identities=11% Similarity=0.364 Sum_probs=4.5
Q ss_pred hhHHHHHhh
Q 037836 53 SCKEVADFV 61 (163)
Q Consensus 53 ~CKEv~~~V 61 (163)
+-.+|.+||
T Consensus 72 a~~~L~~~l 80 (106)
T 1qsd_A 72 FKEDLEQFL 80 (106)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444555555
No 409
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=22.17 E-value=64 Score=27.02 Aligned_cols=17 Identities=18% Similarity=0.024 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHhhh
Q 037836 28 QVLEREISFLEEELKTV 44 (163)
Q Consensus 28 q~LeqEI~fLEEEL~~L 44 (163)
++|++|..-|+.||+++
T Consensus 445 ~~~~~~~~~~~~~~~~~ 461 (487)
T 3oja_A 445 TQLAEENARLKKLNGEA 461 (487)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhhhhh
Confidence 33333333344444443
No 410
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=22.03 E-value=86 Score=20.11 Aligned_cols=18 Identities=17% Similarity=0.139 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 037836 27 VQVLEREISFLEEELKTV 44 (163)
Q Consensus 27 lq~LeqEI~fLEEEL~~L 44 (163)
.+.|++++.-|+.+++.|
T Consensus 25 ~~~i~~~l~~L~~~v~~L 42 (99)
T 3zbh_A 25 SSNVTELIARLDQMSHTL 42 (99)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444444
No 411
>2p61_A Hypothetical protein TM_1646; structural genomics, unknown function, PSI-2, protein structure initiative; 2.70A {Thermotoga maritima MSB8} SCOP: a.24.29.1
Probab=21.99 E-value=81 Score=24.37 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=22.9
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHhh
Q 037836 19 GKRRELAKVQVLEREISFLEEELKT 43 (163)
Q Consensus 19 GKhR~~Aelq~LeqEI~fLEEEL~~ 43 (163)
|++|...-|+..++++..|-+||=+
T Consensus 106 G~~r~y~iVk~ID~kL~eLt~~ll~ 130 (162)
T 2p61_A 106 GRARLHLVVEEVNEKLMDLTEKIMK 130 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCceeEEeehHHhHHHHHHHHHHHH
Confidence 9999999999999999999998743
No 412
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=21.95 E-value=74 Score=30.32 Aligned_cols=44 Identities=20% Similarity=0.066 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccCchh-----hhhHHHHHhhhhcCCC
Q 037836 24 LAKVQVLEREISFLEEELKTVDRFHPAS-----RSCKEVADFVVAKSDP 67 (163)
Q Consensus 24 ~Aelq~LeqEI~fLEEEL~~LE~~~paS-----~~CKEv~~~Ves~pDP 67 (163)
..|++.|++|+..|++|+++|+.+=..- ..=+|+.+..+.=.||
T Consensus 401 ~le~~kl~~E~~eL~~~i~~l~~iL~~~~~l~~~i~~EL~~i~~kygd~ 449 (716)
T 1zvu_A 401 KLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDD 449 (716)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 3466777777777777777777543322 2446666666665665
No 413
>2oo2_A Hypothetical protein AF_1782; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Archaeoglobus fulgidus dsm 4304} SCOP: a.8.11.1
Probab=21.71 E-value=79 Score=22.51 Aligned_cols=19 Identities=16% Similarity=0.244 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHhhhcc
Q 037836 28 QVLEREISFLEEELKTVDR 46 (163)
Q Consensus 28 q~LeqEI~fLEEEL~~LE~ 46 (163)
.++++-|+.|+|-|++++.
T Consensus 9 Eki~kYi~~l~eaL~~i~~ 27 (86)
T 2oo2_A 9 RETLKWLERIEERVKEIEG 27 (86)
T ss_dssp HHHHHHHHHHHHHGGGEEE
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 4789999999999999996
No 414
>3r46_A Coiled coil helix L24D; coiled coil domain, parallel hexamer, KIH interactions, HYDR channel, synthetic biology, de novo protein; 1.75A {Synthetic} PDB: 3r48_A 3r47_A 3r3k_A* 3r48_B 3r4a_A
Probab=21.68 E-value=88 Score=19.26 Aligned_cols=20 Identities=20% Similarity=0.522 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHhhhc
Q 037836 26 KVQVLEREISFLEEELKTVD 45 (163)
Q Consensus 26 elq~LeqEI~fLEEEL~~LE 45 (163)
||+.+-||++-+-.||+.+-
T Consensus 3 elkaiaqelkaiakelkaia 22 (35)
T 3r46_A 3 ELKAIAQELKAIAKELKAIA 22 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 67888888888888888663
No 415
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A
Probab=21.53 E-value=75 Score=24.70 Aligned_cols=23 Identities=13% Similarity=0.167 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcc
Q 037836 24 LAKVQVLEREISFLEEELKTVDR 46 (163)
Q Consensus 24 ~Aelq~LeqEI~fLEEEL~~LE~ 46 (163)
.+.|..+++.|.-++.+|++||.
T Consensus 42 ~~h~~~~~~~i~~~~~~i~~~~~ 64 (228)
T 1flk_A 42 ESQLSRHDQMLSVHDIRLADMDL 64 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677788889999999998883
No 416
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=21.51 E-value=39 Score=25.72 Aligned_cols=23 Identities=13% Similarity=0.118 Sum_probs=14.6
Q ss_pred hhhhhHHHHHhhhhcCCCCcccc
Q 037836 50 ASRSCKEVADFVVAKSDPLIPVN 72 (163)
Q Consensus 50 aS~~CKEv~~~Ves~pDPLLP~t 72 (163)
|..-.++-..-||..||.+.=.+
T Consensus 41 ArQKLkdA~~~~e~DPDevNK~t 63 (113)
T 4fi5_A 41 ARQKVRDAEKQYEKDPDELNKRT 63 (113)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcHHHHHH
Confidence 33355667777888888764433
No 417
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Probab=21.42 E-value=1.1e+02 Score=24.24 Aligned_cols=40 Identities=10% Similarity=0.091 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHhhhcccCchhhhhHHHHHhhhhcCC
Q 037836 27 VQVLEREISFLEEELKTVDRFHPASRSCKEVADFVVAKSD 66 (163)
Q Consensus 27 lq~LeqEI~fLEEEL~~LE~~~paS~~CKEv~~~Ves~pD 66 (163)
-+||+++|+-||.-|+..|---+-.-+.+--++-...+=|
T Consensus 15 aKRlk~sVKKLE~RLkKYepgSpPALALqqqIeKTK~RFd 54 (154)
T 1qzv_F 15 XXXEKQALKKLQASLKLYADDSAPALAIKATMEXXXXXXX 54 (154)
T ss_pred HHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhcccc
Confidence 4678888888888888877555444556666655555443
No 418
>3f31_A Spectrin alpha chain, brain; LONE helix followed by A triple helical bundle, actin cappin binding, alternative splicing, calcium; 2.30A {Homo sapiens} SCOP: a.7.1.0
Probab=21.33 E-value=54 Score=23.51 Aligned_cols=35 Identities=23% Similarity=0.287 Sum_probs=27.4
Q ss_pred CCCCCchhhhHhHHHHHHHHHHHHHHHHHHhhhcc
Q 037836 12 PEYPDLYGKRRELAKVQVLEREISFLEEELKTVDR 46 (163)
Q Consensus 12 P~~pD~~GKhR~~Aelq~LeqEI~fLEEEL~~LE~ 46 (163)
+.|-|.-+-++++.+-+.++.||.--++-++.|..
T Consensus 72 ~~~~d~~~v~~~l~kH~afe~El~a~~~~l~~v~~ 106 (149)
T 3f31_A 72 ENYKDPTNLQGKLQKHQAFEAEVQANSGAIVKLDE 106 (149)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888888888888999998887777766644
No 419
>2lxm_B Charged multivesicular BODY protein 5; MIT, protein transport; NMR {Homo sapiens}
Probab=21.28 E-value=92 Score=20.95 Aligned_cols=17 Identities=18% Similarity=0.214 Sum_probs=11.0
Q ss_pred hhhhHhHHHHHHHHHHH
Q 037836 18 YGKRRELAKVQVLEREI 34 (163)
Q Consensus 18 ~GKhR~~Aelq~LeqEI 34 (163)
+----+.|||..|+||.
T Consensus 20 iDEdEL~aELe~LeqE~ 36 (57)
T 2lxm_B 20 LDEDDLEAELDALGDEL 36 (57)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 34456677777777765
No 420
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=21.22 E-value=94 Score=24.73 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=10.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHhh
Q 037836 22 RELAKVQVLEREISFLEEELKT 43 (163)
Q Consensus 22 R~~Aelq~LeqEI~fLEEEL~~ 43 (163)
+....+.-|+..|.-|++||+.
T Consensus 87 q~se~~~elq~ri~~L~~El~~ 108 (168)
T 3o0z_A 87 HDSEMIGDLQARITSLQEEVKH 108 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444445555555544
No 421
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=21.15 E-value=85 Score=21.93 Aligned_cols=26 Identities=15% Similarity=0.238 Sum_probs=18.7
Q ss_pred hhHhHHHHHHHHHHHHH-HHHHHhhhc
Q 037836 20 KRRELAKVQVLEREISF-LEEELKTVD 45 (163)
Q Consensus 20 KhR~~Aelq~LeqEI~f-LEEEL~~LE 45 (163)
|..++++|..-.+++.- |+.||+.|-
T Consensus 67 R~~~~~klr~Yk~dl~~~lk~~lk~l~ 93 (97)
T 3onj_A 67 RATYKAKLREWKKTIQSDIKRPLQSLV 93 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56677777777777777 777777663
No 422
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=21.09 E-value=58 Score=23.02 Aligned_cols=29 Identities=31% Similarity=0.363 Sum_probs=16.8
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHhhhcccC
Q 037836 20 KRRELAKVQVLEREISFLEEELKTVDRFH 48 (163)
Q Consensus 20 KhR~~Aelq~LeqEI~fLEEEL~~LE~~~ 48 (163)
++...++||.||.+=.-||+.+..||+-=
T Consensus 8 ~e~~~~klq~~E~rN~~Le~~v~~le~~L 36 (79)
T 3cvf_A 8 REETQQKVQDLETRNAELEHQLRAMERSL 36 (79)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 44556667666666666666666666543
No 423
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=21.09 E-value=76 Score=24.88 Aligned_cols=18 Identities=28% Similarity=0.521 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 037836 25 AKVQVLEREISFLEEELK 42 (163)
Q Consensus 25 Aelq~LeqEI~fLEEEL~ 42 (163)
++|+.|.+||.-|+.+|.
T Consensus 113 akI~aL~~Ei~~Lr~qL~ 130 (175)
T 3lay_A 113 AKINAVAKEMESLGQKLD 130 (175)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 424
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=21.02 E-value=72 Score=24.45 Aligned_cols=21 Identities=14% Similarity=0.262 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhc
Q 037836 25 AKVQVLEREISFLEEELKTVD 45 (163)
Q Consensus 25 Aelq~LeqEI~fLEEEL~~LE 45 (163)
.+|.+|+++|..-..+|++||
T Consensus 7 ~~~~~~~~~~~~~~~~~~~l~ 27 (198)
T 4ghu_A 7 SQLSRHDQMLSVHDIRLADMD 27 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666555666655
No 425
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=20.98 E-value=84 Score=23.00 Aligned_cols=22 Identities=14% Similarity=0.309 Sum_probs=16.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHhh
Q 037836 22 RELAKVQVLEREISFLEEELKT 43 (163)
Q Consensus 22 R~~Aelq~LeqEI~fLEEEL~~ 43 (163)
+-+..|+.|++-|.-|++||-+
T Consensus 75 Ka~~~~~el~~~I~~LrqEl~~ 96 (98)
T 4fm3_A 75 KSKDQLGELDKSLKRLRKQLGE 96 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 4456788889999999988854
No 426
>1m7k_A Silencer of death domains; three helix bundle, chaperone; NMR {Homo sapiens} SCOP: a.7.7.1
Probab=20.95 E-value=62 Score=23.72 Aligned_cols=30 Identities=13% Similarity=0.246 Sum_probs=22.0
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHhhhcccC
Q 037836 19 GKRRELAKVQVLEREISFLEEELKTVDRFH 48 (163)
Q Consensus 19 GKhR~~Aelq~LeqEI~fLEEEL~~LE~~~ 48 (163)
..|.-..+|+.+..|+.-|+.+.+.++|..
T Consensus 18 ~~~~~~~kI~~I~~ev~~L~~~V~~f~G~k 47 (99)
T 1m7k_A 18 STPPSIKKIIHVLEKVQYLEQEVEEFVGKK 47 (99)
T ss_dssp -CCCSHHHHHHHHHHHHHHHHHHHHCCSCT
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 445666678888888888888888888763
No 427
>1wwv_A Connector enhancer of kinase suppressor of RAS 1; structural genomics, protein regulation, transcription; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=20.71 E-value=28 Score=24.41 Aligned_cols=33 Identities=24% Similarity=0.164 Sum_probs=19.5
Q ss_pred CCCchhhhHhHHHHHHHHHHHHHHHHHHhhhcccCchh
Q 037836 14 YPDLYGKRRELAKVQVLEREISFLEEELKTVDRFHPAS 51 (163)
Q Consensus 14 ~pD~~GKhR~~Aelq~LeqEI~fLEEEL~~LE~~~paS 51 (163)
...+.=++||+.+|+.|.++..-|+ -|.+++.|
T Consensus 58 I~~~Ghr~~Il~~I~~L~~~~~~l~-----~e~l~~~~ 90 (91)
T 1wwv_A 58 VRSLGHQELILGGVEQLQALSSRLQ-----TENSGPSS 90 (91)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHSCSS-----TTTCCCCC
T ss_pred CCcHhHHHHHHHHHHHHHHHhhccc-----hhcccccC
Confidence 3444456677777777777665444 34555543
No 428
>2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter baumannii} PDB: 2xkk_A*
Probab=20.51 E-value=82 Score=30.22 Aligned_cols=42 Identities=10% Similarity=-0.014 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCc-----hhhhhHHHHHhhhhcCCC
Q 037836 26 KVQVLEREISFLEEELKTVDRFHP-----ASRSCKEVADFVVAKSDP 67 (163)
Q Consensus 26 elq~LeqEI~fLEEEL~~LE~~~p-----aS~~CKEv~~~Ves~pDP 67 (163)
|+..|++|+.-|++|+++|+.+-. ....=+|+.+..+.=.||
T Consensus 697 e~~kl~~E~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~~~~~yg~~ 743 (767)
T 2xkj_E 697 EEMEIRHEQDELSAKAAIIREQLENPESLKNLIISELKEDAKKFGDE 743 (767)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCC
Confidence 456666777777777776665421 223567888877777775
No 429
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=20.48 E-value=65 Score=26.57 Aligned_cols=30 Identities=20% Similarity=0.348 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHhhhcccCchhhhhHHHHHhhhh
Q 037836 30 LEREISFLEEELKTVDRFHPASRSCKEVADFVVA 63 (163)
Q Consensus 30 LeqEI~fLEEEL~~LE~~~paS~~CKEv~~~Ves 63 (163)
+++|++.+..+ ++|+++|+-| -||++.|+.
T Consensus 99 v~~~~~~i~g~--~~~~l~p~~r--~~~~~~~~~ 128 (242)
T 3rag_A 99 VNQELLAVMGK--STEDLPPADR--ARVMQVVEK 128 (242)
T ss_dssp HHHHHHHHSSC--CGGGSCHHHH--HHHHHHHHH
T ss_pred HHHHHHhhccc--ccccCCcchh--cchhhhhhh
Confidence 34444444443 6677899887 244444443
No 430
>1xdn_A RNA editing ligase MP52; HET: MSE ATP; 1.20A {Trypanosoma brucei} SCOP: d.142.2.4
Probab=20.40 E-value=1e+02 Score=26.24 Aligned_cols=32 Identities=16% Similarity=0.264 Sum_probs=26.5
Q ss_pred CCCCchhhhHhHHHHHHHHHHHHHHHHHHhhhccc
Q 037836 13 EYPDLYGKRRELAKVQVLEREISFLEEELKTVDRF 47 (163)
Q Consensus 13 ~~pD~~GKhR~~Aelq~LeqEI~fLEEEL~~LE~~ 47 (163)
..-||.|=|++ +.+|++.|+.|.++|...++.
T Consensus 70 ~~e~FfGy~~i---~~~l~~~~~~l~~~l~~~~~~ 101 (277)
T 1xdn_A 70 PNENFFGYHIL---IDEFTAQIRILNDLLKQKYGL 101 (277)
T ss_dssp TTCCCTTGGGG---HHHHHHHHHHHHHHHHHHHTC
T ss_pred cccccccHHHH---HHHHHHHHHHHHHHHHHhhcc
Confidence 35799999999 667788999999999876654
No 431
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=20.33 E-value=97 Score=21.93 Aligned_cols=25 Identities=16% Similarity=0.420 Sum_probs=16.4
Q ss_pred CchhhhHhHHHHHHHHHHHHHHHHHHhh
Q 037836 16 DLYGKRRELAKVQVLEREISFLEEELKT 43 (163)
Q Consensus 16 D~~GKhR~~Aelq~LeqEI~fLEEEL~~ 43 (163)
++-+|+|. |+.|++||.-|+.++++
T Consensus 69 EI~~Rk~~---v~~l~~~i~~lk~~~~~ 93 (95)
T 2c5k_T 69 DVSGREAQ---VKNIKQQLDALKLRFDR 93 (95)
T ss_dssp CCHHHHHH---HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHhc
Confidence 44555555 66677778877777753
No 432
>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex, cytokine activation, complex (transcription factor/DNA), transcription/DNA complex; HET: DNA PTR; 2.25A {Mus musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A
Probab=20.29 E-value=65 Score=30.06 Aligned_cols=33 Identities=21% Similarity=0.372 Sum_probs=20.6
Q ss_pred hhhhHhH-HHHHHHHHHHHHHHHHHhhhcccCch
Q 037836 18 YGKRREL-AKVQVLEREISFLEEELKTVDRFHPA 50 (163)
Q Consensus 18 ~GKhR~~-Aelq~LeqEI~fLEEEL~~LE~~~pa 50 (163)
-.||+.+ ..|+.|..+++-+|.+++.||-+|..
T Consensus 12 ~~k~~ei~~~v~~lr~~~q~~e~~ik~Le~~Qe~ 45 (596)
T 1bg1_A 12 TEKQQMLEQHLQDVRKRVQDLEQKMKVVENLQDD 45 (596)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677665 55666666666666666666666554
No 433
>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Probab=20.22 E-value=73 Score=26.02 Aligned_cols=41 Identities=17% Similarity=0.193 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccCchhhhhHHHHHhhhhcCCCCc
Q 037836 24 LAKVQVLEREISFLEEELKTVDRFHPASRSCKEVADFVVAKSDPLI 69 (163)
Q Consensus 24 ~Aelq~LeqEI~fLEEEL~~LE~~~paS~~CKEv~~~Ves~pDPLL 69 (163)
.+.|.+|+.|+..|+++++ |++. +.=++-+..+.++.|.+-
T Consensus 10 ~~r~~~l~~~~~~l~~~~~---~~~~--~~~~~~~~~l~~~~~~~~ 50 (217)
T 2gtl_M 10 NLHIDYLAKKLHDIEEEYN---KLTH--DVDKKTIRQLKARISNLE 50 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHH---TSCC--CCCHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHh---hccc--ccchhhhhhcccccccCC
Confidence 4567788888888888876 4333 222333355555555443
No 434
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=20.18 E-value=77 Score=26.39 Aligned_cols=12 Identities=8% Similarity=0.160 Sum_probs=6.4
Q ss_pred hhhhhHHHHHhh
Q 037836 50 ASRSCKEVADFV 61 (163)
Q Consensus 50 aS~~CKEv~~~V 61 (163)
...--|.|++.|
T Consensus 183 la~~gk~Ll~ll 194 (234)
T 3plt_A 183 IAGYGKALLELL 194 (234)
T ss_dssp HHHHHHHHHTTS
T ss_pred HHHHHHHHHHhc
Confidence 444555566555
No 435
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=20.15 E-value=74 Score=28.02 Aligned_cols=7 Identities=0% Similarity=0.339 Sum_probs=3.0
Q ss_pred CcccccC
Q 037836 68 LIPVNRK 74 (163)
Q Consensus 68 LLP~t~g 74 (163)
+|-++.|
T Consensus 126 ileI~aG 132 (371)
T 1zbt_A 126 ILEIRGA 132 (371)
T ss_dssp EEEEEEC
T ss_pred EEEEEcC
Confidence 3444444
No 436
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=20.11 E-value=1e+02 Score=19.71 Aligned_cols=17 Identities=12% Similarity=0.130 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHhhh
Q 037836 28 QVLEREISFLEEELKTV 44 (163)
Q Consensus 28 q~LeqEI~fLEEEL~~L 44 (163)
+.|+.++.-|+.+++.|
T Consensus 23 ~~l~~~l~~L~~~~~~L 39 (97)
T 2vs0_A 23 DQIRQILSDLTRAQGEI 39 (97)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444433
No 437
>3byi_A RHO GTPase activating protein 15; BM046, arhgap15, structural genomics consortium, signaling protein; 2.25A {Homo sapiens}
Probab=20.09 E-value=1.5e+02 Score=22.45 Aligned_cols=18 Identities=22% Similarity=0.434 Sum_probs=11.4
Q ss_pred HHHHHhhhhcCCCCcccc
Q 037836 55 KEVADFVVAKSDPLIPVN 72 (163)
Q Consensus 55 KEv~~~Ves~pDPLLP~t 72 (163)
-=+..|...-||||||..
T Consensus 94 ~lLK~flreLPePLl~~~ 111 (214)
T 3byi_A 94 GALKMFFRELPEPLFPYS 111 (214)
T ss_dssp HHHHHHHHHSSSCSSCHH
T ss_pred HHHHHHHHhCCCCCCCHH
Confidence 334455666788888753
No 438
>1sf9_A YFHH hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative, midwest center for structural genomics; 1.71A {Bacillus subtilis} SCOP: b.34.15.1
Probab=20.07 E-value=66 Score=24.91 Aligned_cols=26 Identities=19% Similarity=0.312 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHhhhcccCchhh
Q 037836 27 VQVLEREISFLEEELKTVDRFHPASR 52 (163)
Q Consensus 27 lq~LeqEI~fLEEEL~~LE~~~paS~ 52 (163)
-+.|++||.-|+|+-..-|-++.++-
T Consensus 34 ~~EL~~EI~~L~EKaRKAEq~Gi~NE 59 (128)
T 1sf9_A 34 PHELNTEIALLSEKARKAEQHGIINE 59 (128)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCccH
Confidence 35789999999999998888888775
Done!