BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037838
         (403 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1J1E|C Chain C, Crystal Structure Of The 52kda Domain Of Human Cardiac
           Troponin In The Ca2+ Saturated Form
 pdb|1J1E|F Chain F, Crystal Structure Of The 52kda Domain Of Human Cardiac
           Troponin In The Ca2+ Saturated Form
          Length = 180

 Score = 30.0 bits (66), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 1/33 (3%)

Query: 321 EDSELIEKRPLVLWREKVLSLSGYRGRKKKIQS 353
           ED+E  E R +  WR+ + +LSG  GRKKK +S
Sbjct: 149 EDTEK-ENREVGDWRKNIDALSGMEGRKKKFES 180


>pdb|2EO4|A Chain A, Crystal Structure Of Hypothetical Histidine Triad
           Nucleotide-Binding Protein St2152 From Sulfolobus
           Tokodaii Strain7
          Length = 149

 Score = 29.3 bits (64), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 29/51 (56%)

Query: 142 FGLPLDFRTTWVHKYPELFRVVKCKEDPELEYLELVTWNPKWAITELEKKV 192
           F L +    TW   YP++F+  K +++ E EY EL+    + +I  L++K+
Sbjct: 93  FHLHVHIIPTWEGDYPDIFKSFKPRKEQEKEYYELLQKIIRESIENLKRKI 143


>pdb|4I1S|A Chain A, Melanoma Differentiation Associated Protein-5 Helicase
           Domain Complex With Inhibitor Non-structural Protein V
          Length = 243

 Score = 28.9 bits (63), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 1/68 (1%)

Query: 273 RLVTDHLTHYRREFVMPQKLMRL-LLKHFGIFYVSERGKRFSVFLTEGYEDSELIEKRPL 331
           R+  +HL  Y     +   + R+    H   FY  E+ K+F V    G  D   I    L
Sbjct: 52  RVCAEHLKKYNEALQINDTIRRIDAYNHLKTFYNDEKEKKFEVLSGSGSLDESDIFLXTL 111

Query: 332 VLWREKVL 339
            L  +K+L
Sbjct: 112 FLRNKKIL 119


>pdb|3DEC|A Chain A, Crystal Structure Of A Glycosyl Hydrolases Family 2
           Protein From Bacteroides Thetaiotaomicron
          Length = 1000

 Score = 28.1 bits (61), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 217 PEYKKVYRYGGKIEHFQKRAYLSPYADARELKAGSLE 253
           PE++  Y  G  +       Y+ PYADA E++ G+ E
Sbjct: 5   PEWQSQYAVG--LNKLDPHTYVWPYADASEVEKGTFE 39


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.136    0.403 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,548,854
Number of Sequences: 62578
Number of extensions: 478261
Number of successful extensions: 897
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 894
Number of HSP's gapped (non-prelim): 7
length of query: 403
length of database: 14,973,337
effective HSP length: 101
effective length of query: 302
effective length of database: 8,652,959
effective search space: 2613193618
effective search space used: 2613193618
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)