BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037838
         (403 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q02141|LEU1_LACLA 2-isopropylmalate synthase OS=Lactococcus lactis subsp. lactis
           (strain IL1403) GN=leuA PE=3 SV=1
          Length = 513

 Score = 35.0 bits (79), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 51/230 (22%), Positives = 100/230 (43%), Gaps = 29/230 (12%)

Query: 87  LLWCGMTEEAEDLLEEEERLLEEHSDKAAEYVTRCLMMSVDKRLPLAKIAHFRRDFGLPL 146
           ++  G +  + D  E  +++ +  +D A   + RC++  +DK +   K A + +   + +
Sbjct: 41  VIEAGFSAASPDSFEAVKQIADSLNDTAVTALARCVISDIDKAVEAVKGAKYPQ---IHV 97

Query: 147 DFRTTWVH-KY-----PE--LFRVVKCKEDPELEYLELVTWNPKWAI-TELEKKVLGVTE 197
              T+ +H KY     PE  L  + KC      E +E+V ++P+ A  TEL   +L   +
Sbjct: 98  FIATSPIHMKYKLKISPEEVLKNIDKCVRYAR-ERVEVVEFSPEDATRTEL-NFLLEAVQ 155

Query: 198 AGPDHTPEMLSLPFPLKF--PPEYKKVYRYGGKIEHFQKRAYLSPY-------ADAREL- 247
              D     +++P  + +  P EY K++++        +    SP+       A A  L 
Sbjct: 156 TAVDAGATYINIPDTVGYTTPEEYGKIFKFLIDNTKSDREIIFSPHCHDDLGMAVANSLA 215

Query: 248 --KAGSLEFDKRAIAVMHELLSFTLEKRLVTDHLTHYRREFVMPQKLMRL 295
             KAG+   +     +     +  LE+  V  H+   R++F   Q  ++L
Sbjct: 216 AIKAGAGRVEGTVNGIGERAGNAALEEIAVALHI---RKDFYQAQSPLKL 262


>sp|Q5R601|VAPA_PONAB Vesicle-associated membrane protein-associated protein A OS=Pongo
           abelii GN=VAPA PE=2 SV=2
          Length = 249

 Score = 32.7 bits (73), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 5/91 (5%)

Query: 42  EPEMVIPVRSLDQYRKQINLPKPHKMSDFIRKSPKLFELCKDKNGLLWCGMTEEAEDLLE 101
           EP   +P   L+  ++   +PKPH +S    ++ KL E CK   G +   ++EE   L +
Sbjct: 143 EPSKAVP---LNASKQDGPMPKPHSVSLNDTETRKLMEECKRLQGEMM-KLSEENRHLRD 198

Query: 102 EEERLLE-EHSDKAAEYVTRCLMMSVDKRLP 131
           E  RL +  HSDK     T     +V   LP
Sbjct: 199 EGLRLRKVAHSDKPGSTSTASFRDNVTSPLP 229


>sp|Q9P0L0|VAPA_HUMAN Vesicle-associated membrane protein-associated protein A OS=Homo
           sapiens GN=VAPA PE=1 SV=3
          Length = 249

 Score = 32.7 bits (73), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 5/91 (5%)

Query: 42  EPEMVIPVRSLDQYRKQINLPKPHKMSDFIRKSPKLFELCKDKNGLLWCGMTEEAEDLLE 101
           EP   +P   L+  ++   +PKPH +S    ++ KL E CK   G +   ++EE   L +
Sbjct: 143 EPSKAVP---LNASKQDGPMPKPHSVSLNDTETRKLMEECKRLQGEMM-KLSEENRHLRD 198

Query: 102 EEERLLE-EHSDKAAEYVTRCLMMSVDKRLP 131
           E  RL +  HSDK     T     +V   LP
Sbjct: 199 EGLRLRKVAHSDKPGSTSTASFRDNVTSPLP 229


>sp|B3Q4F9|KATG_RHIE6 Catalase-peroxidase OS=Rhizobium etli (strain CIAT 652) GN=katG
           PE=3 SV=2
          Length = 728

 Score = 32.0 bits (71), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 21/43 (48%)

Query: 182 KWAITELEKKVLGVTEAGPDHTPEMLSLPFPLKFPPEYKKVYR 224
           +W     E  +    EAG  H P ML+    L+F P Y+K+ R
Sbjct: 341 QWQAKNAEASIPDAYEAGKKHLPTMLTSDLALRFDPIYEKISR 383


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.136    0.398 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 153,513,323
Number of Sequences: 539616
Number of extensions: 6761523
Number of successful extensions: 20180
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 20166
Number of HSP's gapped (non-prelim): 36
length of query: 403
length of database: 191,569,459
effective HSP length: 120
effective length of query: 283
effective length of database: 126,815,539
effective search space: 35888797537
effective search space used: 35888797537
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)