Query 037838
Match_columns 403
No_of_seqs 143 out of 199
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 04:50:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037838.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037838hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11955 PORR: Plant organelle 100.0 5E-114 1E-118 859.5 30.2 330 13-346 1-331 (335)
2 PF11955 PORR: Plant organelle 99.3 5.8E-12 1.3E-16 126.9 11.4 141 106-307 11-152 (335)
3 PLN03196 MOC1-like protein; Pr 65.1 3.5 7.7E-05 44.2 1.7 50 257-309 324-374 (487)
4 PF12872 OST-HTH: OST-HTH/LOTU 59.7 19 0.00042 27.7 4.6 47 34-83 9-66 (74)
5 PF11927 DUF3445: Protein of u 55.2 40 0.00087 33.1 7.0 137 87-243 9-177 (249)
6 PLN03196 MOC1-like protein; Pr 39.6 27 0.00058 37.6 3.3 47 114-163 325-371 (487)
7 TIGR02337 HpaR homoprotocatech 32.9 1.9E+02 0.0041 24.3 6.9 76 35-116 33-112 (118)
8 PRK10870 transcriptional repre 23.2 1.7E+02 0.0036 26.9 5.2 66 38-107 63-132 (176)
9 PF13601 HTH_34: Winged helix 19.7 1.3E+02 0.0029 24.2 3.3 56 52-108 17-77 (80)
10 PF14403 CP_ATPgrasp_2: Circul 17.4 1.8E+02 0.0039 31.2 4.6 61 254-318 57-117 (445)
No 1
>PF11955 PORR: Plant organelle RNA recognition domain; InterPro: IPR021099 The plant organelle RNA recognition (PORR) domain, previously known as DUF860, is a component of group II intron ribonucleoprotein particles in maize chloroplasts. It is required for the splicing of the introns with which it associates, and promotes splicing in the context of a heterodimer with the RNase III-domain protein RNC1. Proteins containing this domain are predicted to localise to mitochondria or chloroplasts []. It seems likely that most PORR proteins function in organellar RNA metabolism [].
Probab=100.00 E-value=5.4e-114 Score=859.48 Aligned_cols=330 Identities=46% Similarity=0.741 Sum_probs=312.3
Q ss_pred ccCCchHHHHHHhHhHHhhHHHHHHHHhcCCCCcccccchhhhcccCCCCCCcchhhHhhhCCCceEeccC-CCCcccee
Q 037838 13 NKRIRPLEIAAEKWKIFSKMKFLMEILRKEPEMVIPVRSLDQYRKQINLPKPHKMSDFIRKSPKLFELCKD-KNGLLWCG 91 (403)
Q Consensus 13 ~~R~~~Ld~~~~r~k~l~~v~~l~~li~~~P~~~ipl~~L~~~~~~LgL~~~~~v~~FlrkyP~iF~~~~~-~~~~~~~r 91 (403)
++||++||++|+++|+++++++|+++|+++|+++||+++|++++++|||+ ++++++||+|||+||++|.+ +.+++||+
T Consensus 1 w~rd~~lD~~i~~~k~l~~v~~l~~~i~~~p~~~~pl~~l~k~~~~L~l~-~~~~~~flrkyP~iF~~~~~~~~~~~~~~ 79 (335)
T PF11955_consen 1 WVRDPYLDKVIEREKRLRFVLRLKDLILSQPSHSLPLRDLSKLRRQLGLK-PRKVSRFLRKYPSIFEVFQHPSRSVPWFR 79 (335)
T ss_pred CCCchhHHHHHHhhhhHHHHHHHHHHHHcCCCCcccHHHHHHHHHhcCCC-cccHHHHHHhCCceEEEeccCCCCCceEE
Confidence 57999999999999999999999999999999999999999999999994 58999999999999999995 57889999
Q ss_pred cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhccCCCccchhHHHHhHHhcCCChhhhccccccCCCceEEeecCCCCCc
Q 037838 92 MTEEAEDLLEEEERLLEEHSDKAAEYVTRCLMMSVDKRLPLAKIAHFRRDFGLPLDFRTTWVHKYPELFRVVKCKEDPEL 171 (403)
Q Consensus 92 LT~~a~~L~~eE~~v~~~~e~~~v~rLrKLLMmS~~~rLpL~kl~~lr~dLGLP~Df~~slv~~yP~~Frvv~~~~dg~~ 171 (403)
|||+|++|++||+++++++++++|++|+||||||.+++|||++|++++||||||+||++++|++|||+|++|+.. +|.
T Consensus 80 LT~~a~~L~~eE~~~~~~~e~~~v~rL~KLLMMS~~~rlpL~ki~~l~~dLGLP~Df~~~lv~~yP~~Frvv~~~-~~~- 157 (335)
T PF11955_consen 80 LTPEAEDLLREERRVREEMEPDLVERLRKLLMMSKDRRLPLSKIAHLRRDLGLPDDFRDSLVPKYPDYFRVVDLE-DGG- 157 (335)
T ss_pred eCHHHHHHHHHHHHHHHhChHHHHHHHHHHhccCCCCcccHHHHHHHHHHcCCChhhccchhhhCCCCcEEeecC-CCC-
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999955 555
Q ss_pred CeEEeecCCCCccchHHHHhhhcccCCCCCCCCCCcccCccccCCcchhhhhhhhHHHHHHhcCCCCCCCcccccCCCCC
Q 037838 172 EYLELVTWNPKWAITELEKKVLGVTEAGPDHTPEMLSLPFPLKFPPEYKKVYRYGGKIEHFQKRAYLSPYADARELKAGS 251 (403)
Q Consensus 172 ~~LeLv~Wdp~LAVS~~Ek~~~~~~~~~~~~~~~~~~~~Fp~~fP~gf~~~~~~~~kl~~fQ~LPyiSPYed~~~l~~~S 251 (403)
.+||||+|||+||||++|++++....+. +......+++|||+||+||++.+++++|+++||+|||+|||+|+++++++|
T Consensus 158 ~~LeLv~Wd~~LAvs~~E~~~~~~~~~~-~~~~~~~~~~Fp~~fp~G~~l~k~~~~~l~~fQ~lPy~SPYed~~~l~~~s 236 (335)
T PF11955_consen 158 RYLELVSWDPELAVSALEKRAEKEYREK-REDGFDRPLAFPVSFPKGFRLKKKFREWLEEFQKLPYISPYEDASHLDPGS 236 (335)
T ss_pred CEEEEeecCCccCcCccchhhhhccccc-cccccCCceeeeecCCCCccccHHHHHHHHHHhcCCCCCCCCCccCCCCCC
Confidence 8999999999999999999998642111 122345689999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHhhccchhhhhhhHHHhhhhhcCCcHHHHHHhhhCCCceEEeecCCeeEEEEecccCCCCccccChh
Q 037838 252 LEFDKRAIAVMHELLSFTLEKRLVTDHLTHYRREFVMPQKLMRLLLKHFGIFYVSERGKRFSVFLTEGYEDSELIEKRPL 331 (403)
Q Consensus 252 ~e~EKRaVaVlHELLSLTveKr~~~~~L~hfr~efgLp~k~~~ll~rHPgIFYvS~Kg~~~TVfLREAY~~~~LIek~PL 331 (403)
+++|||||||+|||||||||||+++++|+|||+|||||++|+++|+|||||||||+||+|+||||||||++|+|||||||
T Consensus 237 ~~~EKRaVaVlHElLSLTveKr~~~~~L~~fr~ef~lp~k~~~~l~rHPgIFYvS~kg~~~TVfLrEAY~~~~Liek~Pl 316 (335)
T PF11955_consen 237 DEAEKRAVAVLHELLSLTVEKRTEVDHLTHFRKEFGLPQKFRRLLLRHPGIFYVSLKGKRHTVFLREAYDGGELIEKHPL 316 (335)
T ss_pred hHHHhHHHHHHHHHHHhhhhhhccHHHHHHHHHHhCCcHHHHHHHHhCCCeEEEeccCCceEEEEeeccCCCCCCCCCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcccc
Q 037838 332 VLWREKVLSLSGYRG 346 (403)
Q Consensus 332 v~~R~K~~~L~g~r~ 346 (403)
+.+|+||++||+...
T Consensus 317 ~~~r~k~~~Lm~~~~ 331 (335)
T PF11955_consen 317 VVIREKFLELMQEGR 331 (335)
T ss_pred HHHHHHHHHHHhhcc
Confidence 999999999996443
No 2
>PF11955 PORR: Plant organelle RNA recognition domain; InterPro: IPR021099 The plant organelle RNA recognition (PORR) domain, previously known as DUF860, is a component of group II intron ribonucleoprotein particles in maize chloroplasts. It is required for the splicing of the introns with which it associates, and promotes splicing in the context of a heterodimer with the RNase III-domain protein RNC1. Proteins containing this domain are predicted to localise to mitochondria or chloroplasts []. It seems likely that most PORR proteins function in organellar RNA metabolism [].
Probab=99.34 E-value=5.8e-12 Score=126.89 Aligned_cols=141 Identities=21% Similarity=0.347 Sum_probs=113.3
Q ss_pred HHHhchHHHHHHHHHHHhccCCCccchhHHHHhHHhcCCChhhhccccccCCCceEEeecCCCCCcCeEEeecCCCCccc
Q 037838 106 LLEEHSDKAAEYVTRCLMMSVDKRLPLAKIAHFRRDFGLPLDFRTTWVHKYPELFRVVKCKEDPELEYLELVTWNPKWAI 185 (403)
Q Consensus 106 v~~~~e~~~v~rLrKLLMmS~~~rLpL~kl~~lr~dLGLP~Df~~slv~~yP~~Frvv~~~~dg~~~~LeLv~Wdp~LAV 185 (403)
+-.+.....|.+|+.+|.-++++.|||+.+..++..|||+.-=..+++.+||..|.+...+..+. .++.|+. -|.
T Consensus 11 i~~~k~l~~v~~l~~~i~~~p~~~~pl~~l~k~~~~L~l~~~~~~~flrkyP~iF~~~~~~~~~~-~~~~LT~----~a~ 85 (335)
T PF11955_consen 11 IEREKRLRFVLRLKDLILSQPSHSLPLRDLSKLRRQLGLKPRKVSRFLRKYPSIFEVFQHPSRSV-PWFRLTP----EAE 85 (335)
T ss_pred HHhhhhHHHHHHHHHHHHcCCCCcccHHHHHHHHHhcCCCcccHHHHHHhCCceEEEeccCCCCC-ceEEeCH----HHH
Confidence 44455668999999999999999999999999999999952222579999999999987543555 8888884 222
Q ss_pred hHHHHhhhcccCCCCCCCCCCcccCccccCCcchhhhhhhhHHHHHHhcCCCCCCCcccccCCCCChhhhHHHHHHHHHH
Q 037838 186 TELEKKVLGVTEAGPDHTPEMLSLPFPLKFPPEYKKVYRYGGKIEHFQKRAYLSPYADARELKAGSLEFDKRAIAVMHEL 265 (403)
Q Consensus 186 S~~Ek~~~~~~~~~~~~~~~~~~~~Fp~~fP~gf~~~~~~~~kl~~fQ~LPyiSPYed~~~l~~~S~e~EKRaVaVlHEL 265 (403)
..++++.. -+ .++|--+|..|+.|
T Consensus 86 ~L~~eE~~----------------------------------------------------~~----~~~e~~~v~rL~KL 109 (335)
T PF11955_consen 86 DLLREERR----------------------------------------------------VR----EEMEPDLVERLRKL 109 (335)
T ss_pred HHHHHHHH----------------------------------------------------HH----HhChHHHHHHHHHH
Confidence 22211111 01 12467899999999
Q ss_pred hhccchhhhhhhHHHhhhhhcCCcHHHHH-HhhhCCCceEEee
Q 037838 266 LSFTLEKRLVTDHLTHYRREFVMPQKLMR-LLLKHFGIFYVSE 307 (403)
Q Consensus 266 LSLTveKr~~~~~L~hfr~efgLp~k~~~-ll~rHPgIFYvS~ 307 (403)
|+|+..+++.+.+|.|++++||||.+|.. ++.+||+.|-|..
T Consensus 110 LMMS~~~rlpL~ki~~l~~dLGLP~Df~~~lv~~yP~~Frvv~ 152 (335)
T PF11955_consen 110 LMMSKDRRLPLSKIAHLRRDLGLPDDFRDSLVPKYPDYFRVVD 152 (335)
T ss_pred hccCCCCcccHHHHHHHHHHcCCChhhccchhhhCCCCcEEee
Confidence 99999999999999999999999999988 6899999999988
No 3
>PLN03196 MOC1-like protein; Provisional
Probab=65.06 E-value=3.5 Score=44.16 Aligned_cols=50 Identities=14% Similarity=0.214 Sum_probs=38.1
Q ss_pred HHHHHHHHHhhccchhhhhhhHHHhhhhhcCCc-HHHHHHhhhCCCceEEeecC
Q 037838 257 RAIAVMHELLSFTLEKRLVTDHLTHYRREFVMP-QKLMRLLLKHFGIFYVSERG 309 (403)
Q Consensus 257 RaVaVlHELLSLTveKr~~~~~L~hfr~efgLp-~k~~~ll~rHPgIFYvS~Kg 309 (403)
++|..+-.+|++..+|- ..++..|++ +|++ +.+..|+.++|.++-.|.+.
T Consensus 324 ~~v~k~P~il~lSe~kl--~~kvefL~~-~Gls~edI~~mv~k~P~lL~~S~~~ 374 (487)
T PLN03196 324 RVIEKLPQIVSLNRNVA--LKHVEFLRG-RGFSAQDVAKMVVRCPQILALNLEI 374 (487)
T ss_pred HHHHhcchhhcccHHHH--HHHHHHHHH-cCCCHHHHHHHHHhCCceeeccHHH
Confidence 45566667888887653 457777775 9998 55667999999999999854
No 4
>PF12872 OST-HTH: OST-HTH/LOTUS domain; PDB: 2KPM_A 3S93_B 3RCO_A 2KZV_A.
Probab=59.70 E-value=19 Score=27.70 Aligned_cols=47 Identities=17% Similarity=0.348 Sum_probs=32.1
Q ss_pred HHHHHHhcCCC--Ccccccchhhh---------cccCCCCCCcchhhHhhhCCCceEeccC
Q 037838 34 FLMEILRKEPE--MVIPVRSLDQY---------RKQINLPKPHKMSDFIRKSPKLFELCKD 83 (403)
Q Consensus 34 ~l~~li~~~P~--~~ipl~~L~~~---------~~~LgL~~~~~v~~FlrkyP~iF~~~~~ 83 (403)
.|.++|.+.++ +.++++.|... -+.+|+. ++..||+..|.+|++-..
T Consensus 9 ~l~~ll~~~~~~~g~v~ls~l~~~~~~~~~~f~~~~yG~~---~l~~ll~~~~~~~~i~~~ 66 (74)
T PF12872_consen 9 LLRELLESQKGEDGWVSLSQLGQEYKKKYPDFDPRDYGFS---SLSELLESLPDVVEIEER 66 (74)
T ss_dssp HHHHHHHHTCTTTSSEEHHHHHHHHHHHHTT--TCCTTSS---SHHHHHHT-TTTEEEEEE
T ss_pred HHHHHHHhCcCCCceEEHHHHHHHHHHHCCCCCccccCCC---cHHHHHHhCCCeEEEeee
Confidence 34456645554 37999888774 3456664 589999999999999433
No 5
>PF11927 DUF3445: Protein of unknown function (DUF3445); InterPro: IPR021848 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 264 to 418 amino acids in length. This protein has a conserved RLP sequence motif. This protein has two completely conserved R residues that may be functionally important.
Probab=55.23 E-value=40 Score=33.08 Aligned_cols=137 Identities=18% Similarity=0.149 Sum_probs=73.8
Q ss_pred ccceecCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhccCCCccchhHHHHhHHhcCCChhhh-ccccccCCCceEEeec
Q 037838 87 LLWCGMTEEAEDLLEEEERLLEEHSDKAAEYVTRCLMMSVDKRLPLAKIAHFRRDFGLPLDFR-TTWVHKYPELFRVVKC 165 (403)
Q Consensus 87 ~~~~rLT~~a~~L~~eE~~v~~~~e~~~v~rLrKLLMmS~~~rLpL~kl~~lr~dLGLP~Df~-~slv~~yP~~Frvv~~ 165 (403)
..|+.+...-.+-+++=+++++++...+..- .+. .....+++ .++. +-++.+||++|.+...
T Consensus 9 ~~wi~iD~~Y~~~~~~R~~ll~~~~~~v~~~-------~p~-------~~~A~~El---l~~v~~~L~~ryP~~F~~~~~ 71 (249)
T PF11927_consen 9 SDWIEIDNTYAARLAERRRLLAEHPDEVLQA-------LPG-------SEAAVWEL---LELVLDYLPARYPQYFSLDGD 71 (249)
T ss_pred HHhccccHHHHHHHHHHHHHHHHCcchhhcc-------Ccc-------HHHHHHHH---HHHHHHHHHHhCchheEEcCC
Confidence 4688899888888888888888766554432 111 12222333 1333 3478899999999543
Q ss_pred C-------CCCCcCeEEeecCCCCccchHHHHhhhcccCCC---CCC-CC-CCcccCccccCCcchhhhhhhhHHHHH--
Q 037838 166 K-------EDPELEYLELVTWNPKWAITELEKKVLGVTEAG---PDH-TP-EMLSLPFPLKFPPEYKKVYRYGGKIEH-- 231 (403)
Q Consensus 166 ~-------~dg~~~~LeLv~Wdp~LAVS~~Ek~~~~~~~~~---~~~-~~-~~~~~~Fp~~fP~gf~~~~~~~~kl~~-- 231 (403)
. -.| ....+...+ .+....++--+....++- ... .. +-.--|.-+.||.||.+..++..-+..
T Consensus 72 ~~~~~~n~~~g--e~~~~~~~~-~~~~~pL~~~~~~vqEDl~il~~~~~~~~~~L~A~~~cfP~~W~l~~K~G~~l~~IH 148 (249)
T PF11927_consen 72 GDRWWHNRLTG--ETFPLDPPD-SLPLDPLEILGRLVQEDLCILLRDEEDGEYRLRAGVVCFPAGWSLSEKIGKPLAAIH 148 (249)
T ss_pred CceeEEeccCC--CEEecCCCC-CCchhHHHHHHHhChhcEEEEeecCCCCcEEEeheeeecCCCCCHHHHcCCcHHHhc
Confidence 2 123 344444321 344445554443222221 000 01 111246677788888776654433322
Q ss_pred -----------------HhcCCCCCCCcc
Q 037838 232 -----------------FQKRAYLSPYAD 243 (403)
Q Consensus 232 -----------------fQ~LPyiSPYed 243 (403)
|.+|+--+|+..
T Consensus 149 ~PVP~y~~~l~~sm~rff~rl~~~~pv~R 177 (249)
T PF11927_consen 149 GPVPGYKEKLAKSMNRFFDRLQPGKPVWR 177 (249)
T ss_pred CCccchhHHHHHHHHHHHHhCCCCCCeEE
Confidence 667776666654
No 6
>PLN03196 MOC1-like protein; Provisional
Probab=39.58 E-value=27 Score=37.59 Aligned_cols=47 Identities=13% Similarity=0.253 Sum_probs=33.6
Q ss_pred HHHHHHHHHhccCCCccchhHHHHhHHhcCCChhhhccccccCCCceEEe
Q 037838 114 AAEYVTRCLMMSVDKRLPLAKIAHFRRDFGLPLDFRTTWVHKYPELFRVV 163 (403)
Q Consensus 114 ~v~rLrKLLMmS~~~rLpL~kl~~lr~dLGLP~Df~~slv~~yP~~Frvv 163 (403)
++.+.-.++.+|.++ -..++.-++ .+|+..+-..+++.++|+.+..-
T Consensus 325 ~v~k~P~il~lSe~k--l~~kvefL~-~~Gls~edI~~mv~k~P~lL~~S 371 (487)
T PLN03196 325 VIEKLPQIVSLNRNV--ALKHVEFLR-GRGFSAQDVAKMVVRCPQILALN 371 (487)
T ss_pred HHHhcchhhcccHHH--HHHHHHHHH-HcCCCHHHHHHHHHhCCceeecc
Confidence 344555566666543 235777777 59999888888999999988764
No 7
>TIGR02337 HpaR homoprotocatechuate degradation operon regulator, HpaR. This Helix-Turn-Helix transcriptional regulator is a member of the MarR family (pfam01047) and is found in association with operons for the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate.
Probab=32.87 E-value=1.9e+02 Score=24.27 Aligned_cols=76 Identities=16% Similarity=0.259 Sum_probs=44.9
Q ss_pred HHHHHhcCCCCcccccchhhhcccCCCCCCcchhhHhhhC--CCceEeccCC--CCccceecCHHHHHHHHHHHHHHHhc
Q 037838 35 LMEILRKEPEMVIPVRSLDQYRKQINLPKPHKMSDFIRKS--PKLFELCKDK--NGLLWCGMTEEAEDLLEEEERLLEEH 110 (403)
Q Consensus 35 l~~li~~~P~~~ipl~~L~~~~~~LgL~~~~~v~~Flrky--P~iF~~~~~~--~~~~~~rLT~~a~~L~~eE~~v~~~~ 110 (403)
+...|..+| .++++.|+ +.+|+.++ .+...|.+- =++.+-..++ +....+.||++|.+++.+=..+..+.
T Consensus 33 iL~~l~~~~--~~t~~ela---~~~~~~~~-tvs~~l~~Le~~GlI~r~~~~~D~R~~~v~LT~~G~~~~~~~~~~~~~~ 106 (118)
T TIGR02337 33 ILRILAEQG--SMEFTQLA---NQACILRP-SLTGILARLERDGLVTRLKASNDQRRVYISLTPKGQALYASLSPQIEEI 106 (118)
T ss_pred HHHHHHHcC--CcCHHHHH---HHhCCCch-hHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHHHHhhHHHHHH
Confidence 334555555 35555665 67888754 444433322 1333333332 45578999999999999877666655
Q ss_pred hHHHHH
Q 037838 111 SDKAAE 116 (403)
Q Consensus 111 e~~~v~ 116 (403)
...+..
T Consensus 107 ~~~~~~ 112 (118)
T TIGR02337 107 YAAIEE 112 (118)
T ss_pred HHHHHH
Confidence 555444
No 8
>PRK10870 transcriptional repressor MprA; Provisional
Probab=23.18 E-value=1.7e+02 Score=26.91 Aligned_cols=66 Identities=14% Similarity=0.124 Sum_probs=35.5
Q ss_pred HHhcCCCCcccccchhhhcccCCCCCCcchhhHhhhC--CCceEeccC--CCCccceecCHHHHHHHHHHHHHH
Q 037838 38 ILRKEPEMVIPVRSLDQYRKQINLPKPHKMSDFIRKS--PKLFELCKD--KNGLLWCGMTEEAEDLLEEEERLL 107 (403)
Q Consensus 38 li~~~P~~~ipl~~L~~~~~~LgL~~~~~v~~Flrky--P~iF~~~~~--~~~~~~~rLT~~a~~L~~eE~~v~ 107 (403)
.|...++..+..++|+ +.+|++.+ .+...+.+- =++=+-..+ .++.-++.||++|.+++.+=....
T Consensus 63 ~L~~~~~~~it~~eLa---~~l~l~~~-tvsr~v~rLe~kGlV~R~~~~~DrR~~~v~LT~~G~~~~~~i~~~~ 132 (176)
T PRK10870 63 TLESQENHSIQPSELS---CALGSSRT-NATRIADELEKRGWIERRESDNDRRCLHLQLTEKGHEFLREVLPPQ 132 (176)
T ss_pred HHhcCCCCCcCHHHHH---HHHCCCHH-HHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHHHHHHHH
Confidence 3334444555556555 67777643 343333221 111111112 245679999999999987644333
No 9
>PF13601 HTH_34: Winged helix DNA-binding domain; PDB: 1UB9_A.
Probab=19.70 E-value=1.3e+02 Score=24.23 Aligned_cols=56 Identities=11% Similarity=0.323 Sum_probs=29.7
Q ss_pred hhhhcccCCCCCCcchhhHhh---hC--CCceEeccCCCCccceecCHHHHHHHHHHHHHHH
Q 037838 52 LDQYRKQINLPKPHKMSDFIR---KS--PKLFELCKDKNGLLWCGMTEEAEDLLEEEERLLE 108 (403)
Q Consensus 52 L~~~~~~LgL~~~~~v~~Flr---ky--P~iF~~~~~~~~~~~~rLT~~a~~L~~eE~~v~~ 108 (403)
.+.+++.||++. ..+..=|+ .. =.+-..+.+.++..|++||++|.+...+-.+.++
T Consensus 17 f~~L~~~l~lt~-g~Ls~hL~~Le~~GyV~~~k~~~~~~p~t~~~lT~~Gr~~~~~~~~~L~ 77 (80)
T PF13601_consen 17 FSELKEELGLTD-GNLSKHLKKLEEAGYVEVEKEFEGRRPRTWYSLTDKGREAFERYVAALR 77 (80)
T ss_dssp HHHHHHHTT--H-HHHHHHHHHHHHTTSEEEEEE-SSS--EEEEEE-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcCH-HHHHHHHHHHHHCCCEEEEEeccCCCCeEEEEECHHHHHHHHHHHHHHH
Confidence 344457888874 33433222 22 2222334444456799999999999888766654
No 10
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2
Probab=17.36 E-value=1.8e+02 Score=31.24 Aligned_cols=61 Identities=23% Similarity=0.190 Sum_probs=47.7
Q ss_pred hhHHHHHHHHHHhhccchhhhhhhHHHhhhhhcCCcHHHHHHhhhCCCceEEeecCCeeEEEEec
Q 037838 254 FDKRAIAVMHELLSFTLEKRLVTDHLTHYRREFVMPQKLMRLLLKHFGIFYVSERGKRFSVFLTE 318 (403)
Q Consensus 254 ~EKRaVaVlHELLSLTveKr~~~~~L~hfr~efgLp~k~~~ll~rHPgIFYvS~Kg~~~TVfLRE 318 (403)
.=++++..++.++.=.+...+.-. .||+-||+|....+++...||+=..+ --.|.=|||.+
T Consensus 57 ~l~~~~~~l~~i~~kv~~~~l~d~---~lR~~fg~~~~~e~Li~~dpgy~~~l-p~aR~Dvf~~~ 117 (445)
T PF14403_consen 57 RLNRIAETLYSILLKVIRRYLRDP---ELRKLFGFSPEEEELILIDPGYDSPL-PIARLDVFLTE 117 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCH---HHHHHhCcCHHHHHHhcCCCCCCCcC-cceeeeEEEcC
Confidence 346788888888876665555544 89999999999999999999986666 55677777775
Done!