Query 037838
Match_columns 403
No_of_seqs 143 out of 199
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 07:40:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037838.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037838hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s93_A Tudor domain-containing 74.6 5.7 0.00019 32.9 5.8 66 22-91 2-78 (102)
2 3m66_A Mterf3, mterf domain-co 70.0 0.88 3E-05 42.6 -0.1 92 57-162 84-178 (270)
3 3rco_A Tudor domain-containing 48.2 20 0.00067 29.1 4.3 50 35-88 18-77 (89)
4 3m66_A Mterf3, mterf domain-co 42.5 8.8 0.0003 35.7 1.6 43 264-308 138-181 (270)
5 4b8x_A SCO5413, possible MARR- 19.9 1.1E+02 0.0038 25.2 4.4 66 37-106 42-111 (147)
6 3eco_A MEPR; mutlidrug efflux 19.3 99 0.0034 24.5 3.9 69 34-107 35-108 (139)
7 4fp9_B Mterf domain-containing 18.9 41 0.0014 33.0 1.7 43 264-308 139-182 (335)
8 2qvo_A Uncharacterized protein 18.2 88 0.003 24.0 3.2 63 43-111 27-92 (95)
9 3mva_O Transcription terminati 17.5 32 0.0011 33.2 0.4 58 57-160 94-151 (343)
10 3jw4_A Transcriptional regulat 17.2 1.8E+02 0.0061 23.4 5.0 70 35-108 46-119 (148)
No 1
>3s93_A Tudor domain-containing protein 5; structural genomics consortium, SGC, transcription; 2.28A {Homo sapiens}
Probab=74.58 E-value=5.7 Score=32.89 Aligned_cols=66 Identities=11% Similarity=0.239 Sum_probs=47.0
Q ss_pred HHHhHhHHhhHH-HHHHHHhcCCCCcccccchhhh----------cccCCCCCCcchhhHhhhCCCceEeccCCCCccce
Q 037838 22 AAEKWKIFSKMK-FLMEILRKEPEMVIPVRSLDQY----------RKQINLPKPHKMSDFIRKSPKLFELCKDKNGLLWC 90 (403)
Q Consensus 22 ~~~r~k~l~~v~-~l~~li~~~P~~~ipl~~L~~~----------~~~LgL~~~~~v~~FlrkyP~iF~~~~~~~~~~~~ 90 (403)
.+++++.+..|. -|+++|.+.++ .+|++.|.+= .+.||.+ .+.+||+--|.++.+...+.|..+|
T Consensus 2 ~~~~~~~l~~vkk~irslLiS~K~-gvtl~~L~~dYr~~~G~~iP~r~lGy~---sl~~fL~sipdvv~~~~~~~G~~~v 77 (102)
T 3s93_A 2 MSEQERIQECLRKEIRSLLISTKD-GLSPQELEKEYLLMVGNHLPLRILGYR---STMELVLDMPDVVRVCPGAGGTVIL 77 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSSS-CBCHHHHHHHHHHHHSSCCCTGGGTCS---SHHHHHHTCTTTEEEECCGGGCCEE
T ss_pred CccHHHHHHHHHHHHHHhheeCCC-CcCHHHHHHHHHHHcCCcCCchhcCcC---CHHHHHHcCCCeEEEEecCCCCEEE
Confidence 467888888877 56678888775 7888888762 4556664 4889999999999875544334333
Q ss_pred e
Q 037838 91 G 91 (403)
Q Consensus 91 r 91 (403)
.
T Consensus 78 ~ 78 (102)
T 3s93_A 78 K 78 (102)
T ss_dssp E
T ss_pred E
Confidence 3
No 2
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=70.00 E-value=0.88 Score=42.61 Aligned_cols=92 Identities=17% Similarity=0.361 Sum_probs=50.3
Q ss_pred ccCCCCCCcchhhHhhhCCCceEeccCCCCccceecCHHHHHHHHHHHHHHHhchHHHHHHHH---HHHhccCCCccchh
Q 037838 57 KQINLPKPHKMSDFIRKSPKLFELCKDKNGLLWCGMTEEAEDLLEEEERLLEEHSDKAAEYVT---RCLMMSVDKRLPLA 133 (403)
Q Consensus 57 ~~LgL~~~~~v~~FlrkyP~iF~~~~~~~~~~~~rLT~~a~~L~~eE~~v~~~~e~~~v~rLr---KLLMmS~~~rLpL~ 133 (403)
+.+|++. ..+...+.++|.++..-.. ++.+.. +.+.++..+ ....++.-+. .+|.+|.++. -.
T Consensus 84 ~~~Gls~-~~i~~~l~~~P~lL~~s~~-------~l~~~v-~~L~~~lG~---~~~~i~~ll~~~P~il~~s~e~~--~~ 149 (270)
T 3m66_A 84 HSKNFSK-ADVAQMVRKAPFLLNFSVE-------RLDNRL-GFFQKELEL---SVKKTRDLVVRLPRLLTGSLEPV--KE 149 (270)
T ss_dssp HHTTCCH-HHHHHHHHHSTTGGGSCHH-------HHHHHH-HHHHHHHCC---CHHHHHHHHHHSGGGGTSCSHHH--HH
T ss_pred HHcCCCH-HHHHHHHHhCCHHHcCCHH-------HHHHHH-HHHHHHhCC---CHHHHHHHHHhCCcceeechHHH--HH
Confidence 3567763 5677777777777742111 111111 111111111 1122333333 6777776631 34
Q ss_pred HHHHhHHhcCCChhhhccccccCCCceEE
Q 037838 134 KIAHFRRDFGLPLDFRTTWVHKYPELFRV 162 (403)
Q Consensus 134 kl~~lr~dLGLP~Df~~slv~~yP~~Frv 162 (403)
++.-+...+|++.+=...++.++|+.+..
T Consensus 150 ~v~~l~~~~G~s~~ei~~~v~~~P~il~~ 178 (270)
T 3m66_A 150 NMKVYRLELGFKHNEIQHMITRIPKMLTA 178 (270)
T ss_dssp HHHHHHHTSCCCHHHHHHHHHHCGGGGTS
T ss_pred HHHHHHHHcCCCHHHHHHHHHhCChhhee
Confidence 55656778999988777888999988754
No 3
>3rco_A Tudor domain-containing protein 7; structural genomics, structural genomics consortium, SGC, HL DNA binding protein; 1.80A {Homo sapiens} PDB: 2lh9_A
Probab=48.25 E-value=20 Score=29.12 Aligned_cols=50 Identities=18% Similarity=0.425 Sum_probs=35.8
Q ss_pred HHHHHhcCCCCcccccchhhh----------cccCCCCCCcchhhHhhhCCCceEeccCCCCcc
Q 037838 35 LMEILRKEPEMVIPVRSLDQY----------RKQINLPKPHKMSDFIRKSPKLFELCKDKNGLL 88 (403)
Q Consensus 35 l~~li~~~P~~~ipl~~L~~~----------~~~LgL~~~~~v~~FlrkyP~iF~~~~~~~~~~ 88 (403)
|+++|.|.|+. ++++.|.+= .++||.+ .+.+||+--|.++.+-..+.+.-
T Consensus 18 iRslL~S~k~g-vtl~~L~~DYr~l~G~~iP~r~lGy~---sl~~fL~siPdvv~~~~~~~Gev 77 (89)
T 3rco_A 18 LRAVLQSHKNG-VALPRLQGEYRSLTGDWIPFKQLGFP---TLEAYLRSVPAVVRIETSRSGEI 77 (89)
T ss_dssp HHHHHHTCTTC-EEHHHHHHHHHHHHSSCCCTTTTTCS---SHHHHHHTCTTTEEEEECTTSCE
T ss_pred HHHHhhcCCCC-CCHHHHHHHHHHHhCCcCChhhhCcc---cHHHHHhcccCeEEEEecCCCCE
Confidence 44578888765 888888762 4667774 48899999999999744333433
No 4
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=42.49 E-value=8.8 Score=35.69 Aligned_cols=43 Identities=16% Similarity=0.289 Sum_probs=29.0
Q ss_pred HHhhccchhhhhhhHHHhhhhhcCCcHH-HHHHhhhCCCceEEeec
Q 037838 264 ELLSFTLEKRLVTDHLTHYRREFVMPQK-LMRLLLKHFGIFYVSER 308 (403)
Q Consensus 264 ELLSLTveKr~~~~~L~hfr~efgLp~k-~~~ll~rHPgIFYvS~K 308 (403)
.+|.+.+++- ..++.-|.+++|++.+ +..++.++|.|+..|.+
T Consensus 138 ~il~~s~e~~--~~~v~~l~~~~G~s~~ei~~~v~~~P~il~~s~~ 181 (270)
T 3m66_A 138 RLLTGSLEPV--KENMKVYRLELGFKHNEIQHMITRIPKMLTANKM 181 (270)
T ss_dssp GGGTSCSHHH--HHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCHH
T ss_pred cceeechHHH--HHHHHHHHHHcCCCHHHHHHHHHhCChhheecHH
Confidence 5566666542 3445556778888875 45588888888888874
No 5
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=19.87 E-value=1.1e+02 Score=25.20 Aligned_cols=66 Identities=9% Similarity=0.143 Sum_probs=38.0
Q ss_pred HHHhcCCCCcccccchhhhcccCCCCCCcchhhH---hhhCCCceEeccC-CCCccceecCHHHHHHHHHHHHH
Q 037838 37 EILRKEPEMVIPVRSLDQYRKQINLPKPHKMSDF---IRKSPKLFELCKD-KNGLLWCGMTEEAEDLLEEEERL 106 (403)
Q Consensus 37 ~li~~~P~~~ipl~~L~~~~~~LgL~~~~~v~~F---lrkyP~iF~~~~~-~~~~~~~rLT~~a~~L~~eE~~v 106 (403)
.+|...|+..++.+.|. +.+|++++ .+.+. |.+-=-|=..-.+ -+..-++.||++|.+++.+=...
T Consensus 42 ~~L~~~~~~~~t~~eLa---~~l~~~~~-tvs~~v~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~~~~ 111 (147)
T 4b8x_A 42 VLLTFSKSGELPMSKIG---ERLMVHPT-SVTNTVDRLVRSGLVAKRPNPNDGRGTLATITDKGREVVEAATRD 111 (147)
T ss_dssp HHHHTSGGGEEEHHHHH---HHHTCCHH-HHHHHHHHHHHTTSEEEEECC----CEEEEECHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCcCHHHHH---HHHCCCHH-HHHHHHHHHHhCCCEEEeecCCcCceeEEEECHHHHHHHHHHHHH
Confidence 35555666667777776 77888743 34433 3333333332221 24567999999999998754333
No 6
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=19.32 E-value=99 Score=24.54 Aligned_cols=69 Identities=16% Similarity=0.211 Sum_probs=40.9
Q ss_pred HHHHHHhcCCCCcccccchhhhcccCCCCCCcchhhHh---hhCCCceEeccCC--CCccceecCHHHHHHHHHHHHHH
Q 037838 34 FLMEILRKEPEMVIPVRSLDQYRKQINLPKPHKMSDFI---RKSPKLFELCKDK--NGLLWCGMTEEAEDLLEEEERLL 107 (403)
Q Consensus 34 ~l~~li~~~P~~~ipl~~L~~~~~~LgL~~~~~v~~Fl---rkyP~iF~~~~~~--~~~~~~rLT~~a~~L~~eE~~v~ 107 (403)
.+...|..+|+..+++.+|. +.+|++++ .+...| .+- ++-+-..++ +..-++.||++|.+++.+-....
T Consensus 35 ~vL~~l~~~~~~~~t~~ela---~~l~~~~~-tvs~~l~~Le~~-Gli~r~~~~~D~R~~~~~LT~~G~~~~~~~~~~~ 108 (139)
T 3eco_A 35 HTLGYLYAHQQDGLTQNDIA---KALQRTGP-TVSNLLRNLERK-KLIYRYVDAQDTRRKNIGLTTSGIKLVEAFTSIF 108 (139)
T ss_dssp HHHHHHHHSTTTCEEHHHHH---HHHTCCHH-HHHHHHHHHHHT-TSEEEEECCC--CCEEEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCcCHHHHH---HHhCCCcc-cHHHHHHHHHHC-CCEeecCCCCCCCeeeeEECHHHHHHHHHHHHHH
Confidence 44446666775567777766 67788743 444433 222 233322222 44678999999999987654444
No 7
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=18.93 E-value=41 Score=32.96 Aligned_cols=43 Identities=7% Similarity=0.226 Sum_probs=30.5
Q ss_pred HHhhccchhhhhhhHHHhhhhhcCCcH-HHHHHhhhCCCceEEeec
Q 037838 264 ELLSFTLEKRLVTDHLTHYRREFVMPQ-KLMRLLLKHFGIFYVSER 308 (403)
Q Consensus 264 ELLSLTveKr~~~~~L~hfr~efgLp~-k~~~ll~rHPgIFYvS~K 308 (403)
.+|++..++ ...++..|+..+|++. .+..|+.++|.|+..|..
T Consensus 139 ~lL~~s~e~--i~~~v~~L~~~lGfS~~ev~~mv~r~P~lL~~S~e 182 (335)
T 4fp9_B 139 EIFTMRQQD--INDTVRLLKEKCLFTVQQVTKILHSCPSVLREDLG 182 (335)
T ss_dssp GGGTSCHHH--HHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCHH
T ss_pred hhhccChHH--HHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHH
Confidence 345555543 2345667888999976 466799999999999864
No 8
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=18.22 E-value=88 Score=23.95 Aligned_cols=63 Identities=6% Similarity=0.152 Sum_probs=38.7
Q ss_pred CCCcccccchhhhcccCCCCCCcchhhH---hhhCCCceEeccCCCCccceecCHHHHHHHHHHHHHHHhch
Q 037838 43 PEMVIPVRSLDQYRKQINLPKPHKMSDF---IRKSPKLFELCKDKNGLLWCGMTEEAEDLLEEEERLLEEHS 111 (403)
Q Consensus 43 P~~~ipl~~L~~~~~~LgL~~~~~v~~F---lrkyP~iF~~~~~~~~~~~~rLT~~a~~L~~eE~~v~~~~e 111 (403)
++..++...|+ +.+|++++ .+.+. |.+.=-| .....++.-.+.||++|.+++.+-.....+.+
T Consensus 27 ~~~~~t~~eLa---~~l~i~~~-tvs~~l~~Le~~Glv--~~~~d~R~~~v~LT~~G~~~~~~~~~~~~~~e 92 (95)
T 2qvo_A 27 GGNDVYIQYIA---SKVNSPHS-YVWLIIKKFEEAKMV--ECELEGRTKIIRLTDKGQKIAQQIKSIIDIME 92 (95)
T ss_dssp TTCCEEHHHHH---HHSSSCHH-HHHHHHHHHHHTTSE--EEEEETTEEEEEECHHHHHHHHHHHHHHHHC-
T ss_pred CCCCcCHHHHH---HHHCcCHH-HHHHHHHHHHHCcCc--cCCCCCCeEEEEEChhHHHHHHHHHHHHHHHh
Confidence 33446666666 67888753 34433 4444444 22222445689999999999988776665544
No 9
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=17.47 E-value=32 Score=33.25 Aligned_cols=58 Identities=16% Similarity=0.237 Sum_probs=0.0
Q ss_pred ccCCCCCCcchhhHhhhCCCceEeccCCCCccceecCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhccCCCccchhHHH
Q 037838 57 KQINLPKPHKMSDFIRKSPKLFELCKDKNGLLWCGMTEEAEDLLEEEERLLEEHSDKAAEYVTRCLMMSVDKRLPLAKIA 136 (403)
Q Consensus 57 ~~LgL~~~~~v~~FlrkyP~iF~~~~~~~~~~~~rLT~~a~~L~~eE~~v~~~~e~~~v~rLrKLLMmS~~~rLpL~kl~ 136 (403)
+.+|++ +..+...|.+||.+ |+-+....--...++
T Consensus 94 ~~lG~s-~~~i~~il~~~P~i--------------------------------------------Ll~s~~~~~l~p~v~ 128 (343)
T 3mva_O 94 RKIVTS-DLEIVNILERSPES--------------------------------------------FFRSNNNLNLENNIK 128 (343)
T ss_dssp TTTSSC-HHHHHHHHHHCSHH--------------------------------------------HHSCCCHHHHHHHHH
T ss_pred HHcCCC-HHHHHHHHHHCCHH--------------------------------------------HhCCChHhhHHHHHH
Q ss_pred HhHHhcCCChhhhccccccCCCce
Q 037838 137 HFRRDFGLPLDFRTTWVHKYPELF 160 (403)
Q Consensus 137 ~lr~dLGLP~Df~~slv~~yP~~F 160 (403)
-++ ++|+|.+-...++.++|..|
T Consensus 129 fL~-~lGl~~~~i~~ll~~~P~il 151 (343)
T 3mva_O 129 FLY-SVGLTRKCLCRLLTNAPRTF 151 (343)
T ss_dssp HHH-HTTCCHHHHHHHHHHCGGGG
T ss_pred HHH-HhCCCHHHHHHHHHhCChhh
No 10
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=17.23 E-value=1.8e+02 Score=23.37 Aligned_cols=70 Identities=9% Similarity=0.072 Sum_probs=33.2
Q ss_pred HHHHHhcCCCCcccccchhhhcccCCCCCCcchhhHhhh---CCCceEec-cCCCCccceecCHHHHHHHHHHHHHHH
Q 037838 35 LMEILRKEPEMVIPVRSLDQYRKQINLPKPHKMSDFIRK---SPKLFELC-KDKNGLLWCGMTEEAEDLLEEEERLLE 108 (403)
Q Consensus 35 l~~li~~~P~~~ipl~~L~~~~~~LgL~~~~~v~~Flrk---yP~iF~~~-~~~~~~~~~rLT~~a~~L~~eE~~v~~ 108 (403)
+...|..+|+..++..+|. +.+|++++ .+...|.+ -=-|-..- ...+..-++.||++|.+++.+-.....
T Consensus 46 vL~~l~~~~~~~~t~~eLa---~~l~~~~~-~vs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~~~~~~~ 119 (148)
T 3jw4_A 46 MIGYIYENQESGIIQKDLA---QFFGRRGA-SITSMLQGLEKKGYIERRIPENNARQKNIYVLPKGAALVEEFNNIFL 119 (148)
T ss_dssp HHHHHHHHTTTCCCHHHHH---HC-------CHHHHHHHHHHTTSBCCC--------CCCCBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCCHHHHH---HHHCCChh-HHHHHHHHHHHCCCEEeeCCCCCchhheeeECHHHHHHHHHHHHHHH
Confidence 3445555554456666666 77888753 44443322 21121111 112445689999999999887555443
Done!