Query 037838
Match_columns 403
No_of_seqs 143 out of 199
Neff 5.0
Searched_HMMs 13730
Date Mon Mar 25 07:40:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037838.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/037838hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3broa1 a.4.5.28 (A:3-137) Tra 39.1 17 0.0013 27.7 4.8 71 34-108 33-107 (135)
2 d2frha1 a.4.5.28 (A:102-216) P 18.7 35 0.0025 25.7 3.0 62 38-102 41-105 (115)
3 d2gdwa1 a.28.1.2 (A:8-83) Pept 17.7 85 0.0062 21.8 4.8 49 253-302 7-67 (76)
4 d1p4xa1 a.4.5.28 (A:1-125) Sta 17.6 1.4E+02 0.0099 22.4 6.5 66 37-106 41-110 (125)
5 d3ctaa1 a.4.5.28 (A:5-89) Ta10 15.9 30 0.0022 25.1 1.8 58 44-107 19-79 (85)
6 d1ub9a_ a.4.5.28 (A:) Hypothet 15.6 1.1E+02 0.0082 21.7 5.2 67 33-105 19-89 (100)
7 d1p4xa2 a.4.5.28 (A:126-250) S 15.2 1.2E+02 0.0088 22.9 5.5 63 36-102 39-105 (125)
8 d1hsja1 a.4.5.28 (A:373-487) S 15.0 87 0.0063 23.3 4.5 65 36-104 38-106 (115)
9 d1sfka_ a.190.1.1 (A:) Flavivi 11.3 33 0.0024 25.0 0.8 19 269-287 47-65 (73)
10 d1gpma1 c.26.2.1 (A:208-404) G 9.1 66 0.0048 24.6 2.0 21 133-157 175-195 (197)
No 1
>d3broa1 a.4.5.28 (A:3-137) Transcriptional regulator OEOE1854 {Oenococcus oeni [TaxId: 1247]}
Probab=39.15 E-value=17 Score=27.72 Aligned_cols=71 Identities=10% Similarity=0.163 Sum_probs=46.0
Q ss_pred HHHHHHhcCCCCcccccchhhhcccCCCCCCcchh---hHhhhCCCceEeccC-CCCccceecCHHHHHHHHHHHHHHH
Q 037838 34 FLMEILRKEPEMVIPVRSLDQYRKQINLPKPHKMS---DFIRKSPKLFELCKD-KNGLLWCGMTEEAEDLLEEEERLLE 108 (403)
Q Consensus 34 ~l~~li~~~P~~~ipl~~L~~~~~~LgL~~~~~v~---~FlrkyP~iF~~~~~-~~~~~~~rLT~~a~~L~~eE~~v~~ 108 (403)
.+...|..+|++.+++.+|+ +.+|+.++ .+. .-|.+-=-|-....+ .+....+.|||+|.+++.+=.....
T Consensus 33 ~vL~~l~~~~~~~it~~ela---~~~~~~~~-~vs~~l~~L~~~g~v~r~~~~~D~R~~~i~lT~~G~~~~~~~~~~~~ 107 (135)
T d3broa1 33 TIIDYLSRNKNKEVLQRDLE---SEFSIKSS-TATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANKLETIILSYMD 107 (135)
T ss_dssp HHHHHHHHTTTSCCBHHHHH---HHHTCCHH-HHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCHHHHH---HHHCcCHh-HHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccHHHHHHHHHHHHHHH
Confidence 44456777898888888887 66777643 333 334444444444322 3556799999999999876554443
No 2
>d2frha1 a.4.5.28 (A:102-216) Pleiotropic regulator of virulence genes, SarA {Staphylococcus aureus [TaxId: 1280]}
Probab=18.66 E-value=35 Score=25.70 Aligned_cols=62 Identities=8% Similarity=0.137 Sum_probs=38.9
Q ss_pred HHhcCCCCcccccchhhhcccCCCCCC--cchhhHhhhCCCceEeccC-CCCccceecCHHHHHHHHH
Q 037838 38 ILRKEPEMVIPVRSLDQYRKQINLPKP--HKMSDFIRKSPKLFELCKD-KNGLLWCGMTEEAEDLLEE 102 (403)
Q Consensus 38 li~~~P~~~ipl~~L~~~~~~LgL~~~--~~v~~FlrkyP~iF~~~~~-~~~~~~~rLT~~a~~L~~e 102 (403)
.|..+|+..+++..|. +.+++.++ -++..-|.+---|-..-.+ .++.-++.|||+|.+.+.+
T Consensus 41 ~l~~~~~~~~t~~~la---~~l~~~~~tvs~~i~~Le~~gli~r~~~~~D~R~~~i~LT~~G~~~~~~ 105 (115)
T d2frha1 41 YISENKEKEYYLKDII---NHLNYKQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKIES 105 (115)
T ss_dssp HHHHTCCSEEEHHHHH---HHSSSHHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHH---HHHCCCHhHHHHHHHHHHhhhhheeeecccCCceEEEEECHHHHHHHHH
Confidence 5667888778777776 67777643 1233334444444333222 2456799999999998765
No 3
>d2gdwa1 a.28.1.2 (A:8-83) Peptidyl carrier protein (PCP), thioester domain {Bacillus brevis [TaxId: 1393]}
Probab=17.69 E-value=85 Score=21.79 Aligned_cols=49 Identities=12% Similarity=0.169 Sum_probs=31.2
Q ss_pred hhhHHHHHHHHHHhhcc-chh-----------hhhhhHHHhhhhhcCCcHHHHHHhhhCCCc
Q 037838 253 EFDKRAIAVMHELLSFT-LEK-----------RLVTDHLTHYRREFVMPQKLMRLLLKHFGI 302 (403)
Q Consensus 253 e~EKRaVaVlHELLSLT-veK-----------r~~~~~L~hfr~efgLp~k~~~ll~rHPgI 302 (403)
+.|++..+++-++|... +.- ...+.-+..++++||++-.+..++ .||-+
T Consensus 7 ~~E~~l~~i~~~vL~~~~i~~~~~f~~lG~dSl~a~~l~~~i~~~~~~~l~~~~l~-~~pTi 67 (76)
T d2gdwa1 7 AVESKLAEIWERVLGVSGIGILDNFFQIGGHSLKAMAVAAQVHREYQVELPLKVLF-AQPTI 67 (76)
T ss_dssp HHHHHHHHHHHHHTTSSCCCTTTTSSTTTCTTHHHHHHHHHHHHTTSSCCTTHHHH-HSCSH
T ss_pred HHHHHHHHHHHHHcCCCCCCCCCCHHHcCCChHHHHHHHHHHHHHHCCCCCHHHHH-cCCCH
Confidence 46777777777777653 111 122444556788899888888776 57753
No 4
>d1p4xa1 a.4.5.28 (A:1-125) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]}
Probab=17.62 E-value=1.4e+02 Score=22.40 Aligned_cols=66 Identities=14% Similarity=0.249 Sum_probs=38.5
Q ss_pred HHHhcCCCCcccccchhhhcccCCCCCCcchhhHhhh---CCCceEe-ccCCCCccceecCHHHHHHHHHHHHH
Q 037838 37 EILRKEPEMVIPVRSLDQYRKQINLPKPHKMSDFIRK---SPKLFEL-CKDKNGLLWCGMTEEAEDLLEEEERL 106 (403)
Q Consensus 37 ~li~~~P~~~ipl~~L~~~~~~LgL~~~~~v~~Flrk---yP~iF~~-~~~~~~~~~~rLT~~a~~L~~eE~~v 106 (403)
..|...|++.+++..|. +.+++.++ .+...|.+ -=-|=.. ....++.-.+.||++|.+++.+-...
T Consensus 41 ~~l~~~~~~~~t~~eia---~~~~~~~~-~vs~~l~~L~~~g~v~r~~~~~D~R~~~i~lT~~G~~~~~~~~~~ 110 (125)
T d1p4xa1 41 TYLFHQQENTLPFKKIV---SDLCYKQS-DLVQHIKVLVKHSYISKVRSKIDERNTYISISEEQREKIAERVTL 110 (125)
T ss_dssp HHHHSCSCSEEEHHHHH---HHSSSCGG-GTHHHHHHHHHTTSCEEEECSSSTTSEEEECCHHHHHHHHHHHHH
T ss_pred HHHHHhccCCcCHHHHH---HHhCCCcc-hHHHHHHHHHHCCCceeecccCCCCeEEEEECHHHHHHHHHHHHH
Confidence 35566777777777776 66777643 33333222 1111111 12235677999999999987754333
No 5
>d3ctaa1 a.4.5.28 (A:5-89) Ta1064 (RFK), N-terminal domain {Thermoplasma acidophilum [TaxId: 2303]}
Probab=15.90 E-value=30 Score=25.13 Aligned_cols=58 Identities=16% Similarity=0.087 Sum_probs=34.8
Q ss_pred CCcccccchhhhcccCCCCCCcchhhHhhhC---CCceEeccCCCCccceecCHHHHHHHHHHHHHH
Q 037838 44 EMVIPVRSLDQYRKQINLPKPHKMSDFIRKS---PKLFELCKDKNGLLWCGMTEEAEDLLEEEERLL 107 (403)
Q Consensus 44 ~~~ipl~~L~~~~~~LgL~~~~~v~~Flrky---P~iF~~~~~~~~~~~~rLT~~a~~L~~eE~~v~ 107 (403)
+..|+..+|+ +.+|++. ..+...|.+- =-|-. ...++.-++.||++|.+++.++..-+
T Consensus 19 ~~~lt~~eLa---~~l~i~~-~~vs~~l~~Le~~GlV~r--~~D~R~~~i~LT~~G~~~l~~~~~~~ 79 (85)
T d3ctaa1 19 RAYLTSSKLA---DMLGISQ-QSASRIIIDLEKNGYITR--TVTKRGQILNITEKGLDVLYTEFADL 79 (85)
T ss_dssp EEECCHHHHH---HHHTSCH-HHHHHHHHHHHHTTSEEE--EEETTEEEEEECHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHH---HHHCCCH-HHHHHHHHHHHHCCCeee--ecccccccceECHHHHHHHHHHHHHH
Confidence 3356666666 7788874 3555444332 11111 12245568999999999988766433
No 6
>d1ub9a_ a.4.5.28 (A:) Hypothetical protein PH1061 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=15.56 E-value=1.1e+02 Score=21.69 Aligned_cols=67 Identities=12% Similarity=0.051 Sum_probs=36.6
Q ss_pred HHHHHHHhcCCCCcccccchhhhcccCCCCCCcchhhHhh---hCCCc-eEeccCCCCccceecCHHHHHHHHHHHH
Q 037838 33 KFLMEILRKEPEMVIPVRSLDQYRKQINLPKPHKMSDFIR---KSPKL-FELCKDKNGLLWCGMTEEAEDLLEEEER 105 (403)
Q Consensus 33 ~~l~~li~~~P~~~ipl~~L~~~~~~LgL~~~~~v~~Flr---kyP~i-F~~~~~~~~~~~~rLT~~a~~L~~eE~~ 105 (403)
+.+..+|..++ .+++.+|. +.+|+..+ .+..-|. +.=-| -+.....++..+++||++|.++..+-..
T Consensus 19 ~~IL~~L~~~~--~~~~~eLa---~~l~is~~-~vs~~l~~L~~~glV~~~~~~~d~r~~~~~LT~~G~~~~~~~~~ 89 (100)
T d1ub9a_ 19 LGIMIFLLPRR--KAPFSQIQ---KVLDLTPG-NLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGMEEAKRFLS 89 (100)
T ss_dssp HHHHHHHHHHS--EEEHHHHH---HHTTCCHH-HHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHHHHHHHHH
T ss_pred HHHHHHhccCC--CeeHHHHH---HHHhhccc-cccHHHHHHhhhceeEEEEcCcCCccccccCCHHHHHHHHHHHH
Confidence 34555665554 35555554 78888743 3333222 22222 1112223456789999999887765433
No 7
>d1p4xa2 a.4.5.28 (A:126-250) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]}
Probab=15.18 E-value=1.2e+02 Score=22.92 Aligned_cols=63 Identities=13% Similarity=0.240 Sum_probs=37.5
Q ss_pred HHHHhcCCCCcccccchhhhcccCCCCCCcchhhHhhh---CCCceEe-ccCCCCccceecCHHHHHHHHH
Q 037838 36 MEILRKEPEMVIPVRSLDQYRKQINLPKPHKMSDFIRK---SPKLFEL-CKDKNGLLWCGMTEEAEDLLEE 102 (403)
Q Consensus 36 ~~li~~~P~~~ipl~~L~~~~~~LgL~~~~~v~~Flrk---yP~iF~~-~~~~~~~~~~rLT~~a~~L~~e 102 (403)
...|...++..+++..+. +.+|++.+ .+.+-+.+ -=-|=.. ....++.-++.||++|.+++.+
T Consensus 39 L~~l~~~~~~~~~~~~ia---~~l~~~~~-~vs~~v~~L~~~glV~r~~~~~D~R~v~i~LT~~G~~~~~~ 105 (125)
T d1p4xa2 39 LAIITSQNKNIVLLKDLI---ETIHHKYP-QTVRALNNLKKQGYLIKERSTEDERKILIHMDDAQQDHAEQ 105 (125)
T ss_dssp HHHHHTTTTCCEEHHHHH---HHSSSCHH-HHHHHHHHHHHHTSSEEEECSSSTTCEEEECCHHHHHHHHH
T ss_pred HHHHHHccCCCccHHHHH---HHHCCCcc-hHHHHHHHHHhccCEeeeecCCCCCeEEEEECHHHHHHHHH
Confidence 345656666677777776 77888753 34333322 1222111 1223556799999999998865
No 8
>d1hsja1 a.4.5.28 (A:373-487) Staphylococcal accessory regulator A homolog, SarR {Staphylococcus aureus [TaxId: 1280]}
Probab=14.97 E-value=87 Score=23.30 Aligned_cols=65 Identities=6% Similarity=0.035 Sum_probs=39.2
Q ss_pred HHHHhcCCCCcccccchhhhcccCCCCCCcchhhHhh---hCCCceEe-ccCCCCccceecCHHHHHHHHHHH
Q 037838 36 MEILRKEPEMVIPVRSLDQYRKQINLPKPHKMSDFIR---KSPKLFEL-CKDKNGLLWCGMTEEAEDLLEEEE 104 (403)
Q Consensus 36 ~~li~~~P~~~ipl~~L~~~~~~LgL~~~~~v~~Flr---kyP~iF~~-~~~~~~~~~~rLT~~a~~L~~eE~ 104 (403)
...|..+++..+++..|+ ..+|+..+ .+.+.|. +-=-|=.. ...-++.-++.||++|.+++.+=.
T Consensus 38 L~~l~~~~~~~~t~~ela---~~l~~~~~-~vs~~i~~Le~~gli~r~~~~~D~R~~~i~LT~~G~~~~~~~~ 106 (115)
T d1hsja1 38 LNHILRSESNEISSKEIA---KCSEFKPY-YLTKALQKLKDLKLLSKKRSLQDERTVIVYVTDTQKANIQKLI 106 (115)
T ss_dssp HHHHHTCSCSEEEHHHHH---HSSCCCHH-HHHHHHHHHHTTTTSCCEECCSSSSCCEEECCSSHHHHHHHHH
T ss_pred HHHHHccCCCCcCHHHHH---HHHCCChh-hHHHHHHHHHHcCCeEEEeecCCCceEEEEECHHHHHHHHHHH
Confidence 335555666677777776 77888743 3443332 22222212 122356789999999999987643
No 9
>d1sfka_ a.190.1.1 (A:) Flavivirus capsid protein C {Kunjin virus [TaxId: 11077]}
Probab=11.34 E-value=33 Score=25.04 Aligned_cols=19 Identities=21% Similarity=0.508 Sum_probs=16.7
Q ss_pred cchhhhhhhHHHhhhhhcC
Q 037838 269 TLEKRLVTDHLTHYRREFV 287 (403)
Q Consensus 269 TveKr~~~~~L~hfr~efg 287 (403)
+|+|...+.+|..||+|.|
T Consensus 47 ~v~K~~A~k~L~~FKKeig 65 (73)
T d1sfka_ 47 SVNKQTAMKHLLSFKKELG 65 (73)
T ss_dssp TSCHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHH
Confidence 5788889999999999976
No 10
>d1gpma1 c.26.2.1 (A:208-404) GMP synthetase, central domain {Escherichia coli [TaxId: 562]}
Probab=9.09 E-value=66 Score=24.60 Aligned_cols=21 Identities=24% Similarity=0.574 Sum_probs=16.9
Q ss_pred hHHHHhHHhcCCChhhhccccccCC
Q 037838 133 AKIAHFRRDFGLPLDFRTTWVHKYP 157 (403)
Q Consensus 133 ~kl~~lr~dLGLP~Df~~slv~~yP 157 (403)
..|..+..+||||.+ ++.++|
T Consensus 175 ~eV~~lA~~lglP~~----i~~~~p 195 (197)
T d1gpma1 175 DEVRKIGLELGLPYD----MLYRHP 195 (197)
T ss_dssp HHHHHHHHHTTCCHH----HHTSCC
T ss_pred HHHHHHHHHcCCCHH----HhCCCC
Confidence 478899999999996 566666
Done!