BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037839
(177 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 91 SYPKLPYSEARLQKKDSTATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTC 150
S +LP S T C +C+ D+ S +LR+LP C+H FH KCVD WL+ + TC
Sbjct: 5 SSGQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTC 63
Query: 151 PVCR 154
P+CR
Sbjct: 64 PICR 67
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 28/43 (65%)
Query: 112 CSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCR 154
C++CLA+ + R LP C H FH +CVD WL H TCP+CR
Sbjct: 8 CAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCR 50
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 112 CSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCR 154
C +C DY + +R LP C+HLFH C+ PWL H +CPVCR
Sbjct: 18 CPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCR 59
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 112 CSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCR 154
C+ICL+ + +R LP C HLFH CVD WL + CP+CR
Sbjct: 17 CTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICR 58
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 111 CCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCR 154
CC IC ++Y D+ LP C H FH CV WL+ TCPVCR
Sbjct: 42 CCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCR 84
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 112 CSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVC 153
C++CL D++ D L + P C H FH KC+ WL + CP+C
Sbjct: 18 CAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLC 58
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
Query: 98 SEARLQKKDSTATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCR 154
S R+++ CC IC+ D R+ L+ C+H F KC+D W H CP+CR
Sbjct: 5 SSGRVKQLTDEEECC-ICM-DGRAD----LILPCAHSFCQKCIDKWSDRHRNCPICR 55
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 35.8 bits (81), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 112 CSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCR 154
C ICL D + M LP C H F C+ W+R +PTCP+C+
Sbjct: 8 CPICLEDPSNYSMA--LP-CLHAFCYVCITRWIRQNPTCPLCK 47
>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human
Ring-Box Protein 2
Length = 81
Score = 33.9 bits (76), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 101 RLQKKDSTATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCR 154
R+Q D+ C C A+ + D + + +C+H FH C+ W++ + CP+C+
Sbjct: 22 RVQVMDA----CLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQ 71
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger
And Chy Zinc Finger Domain-Containing Protein 1 From Mus
Musculus
Length = 55
Score = 33.1 bits (74), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 106 DSTATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVC 153
S ++ C ICL D +S ++ + C HL H C + L+ CP+C
Sbjct: 2 SSGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLC 49
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 130 DCSHLFHVKCVDPWLRLHPTCPVCR 154
+C+H F C++ W++ CP+CR
Sbjct: 70 NCAHSFCSYCINEWMKRKIECPICR 94
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 130 DCSHLFHVKCVDPWLRLHPTCPVCR 154
+C+H F C++ W++ CP+CR
Sbjct: 70 NCAHSFCSYCINEWMKRKIECPICR 94
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
Northeast Structural Genomics Consortium Target Ht2b
Length = 52
Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 112 CSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVC 153
C ICL D +S ++ + C HL H C + L+ CP+C
Sbjct: 8 CPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLC 49
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 31.2 bits (69), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 130 DCSHLFHVKCVDPWLRLHPTCPVCR 154
+C+H F C++ W++ CP+CR
Sbjct: 81 NCAHSFCSYCINEWMKRKIECPICR 105
>pdb|3AWD|A Chain A, Crystal Structure Of Gox2181
pdb|3AWD|B Chain B, Crystal Structure Of Gox2181
pdb|3AWD|C Chain C, Crystal Structure Of Gox2181
pdb|3AWD|D Chain D, Crystal Structure Of Gox2181
Length = 260
Score = 30.8 bits (68), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 73 HNQSSIVIDVGLDESTIKSYPKLPYSEARLQKKDSTATCCSICLADYRSSDM 124
H+ SS+V+DV ES + + E R+ D C IC+++ ++ DM
Sbjct: 62 HDVSSVVMDVTNTESVQNAVRSVHEQEGRV---DILVACAGICISEVKAEDM 110
>pdb|4A0K|B Chain B, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 117
Score = 30.4 bits (67), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 131 CSHLFHVKCVDPWLRLHPTCPV 152
C+H FH C+ WL+ CP+
Sbjct: 84 CNHAFHFHCISRWLKTRQVCPL 105
>pdb|2LGV|A Chain A, Rbx1
Length = 100
Score = 30.4 bits (67), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 131 CSHLFHVKCVDPWLRLHPTCPV 152
C+H FH C+ WL+ CP+
Sbjct: 67 CNHAFHFHCISRWLKTRQVCPL 88
>pdb|1U6G|B Chain B, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
pdb|2HYE|D Chain D, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 108
Score = 30.0 bits (66), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 131 CSHLFHVKCVDPWLRLHPTCPV 152
C+H FH C+ WL+ CP+
Sbjct: 75 CNHAFHFHCISRWLKTRQVCPL 96
>pdb|4A0C|D Chain D, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|F Chain F, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0L|F Chain F, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|I Chain I, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 98
Score = 30.0 bits (66), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 131 CSHLFHVKCVDPWLRLHPTCPV 152
C+H FH C+ WL+ CP+
Sbjct: 65 CNHAFHFHCISRWLKTRQVCPL 86
>pdb|3DQV|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|Y Chain Y, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 106
Score = 30.0 bits (66), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 131 CSHLFHVKCVDPWLRLHPTCPV 152
C+H FH C+ WL+ CP+
Sbjct: 73 CNHAFHFHCISRWLKTRQVCPL 94
>pdb|3DPL|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation.
pdb|3RTR|B Chain B, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|D Chain D, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|F Chain F, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|H Chain H, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|4F52|B Chain B, Structure Of A Glomulin-Rbx1-Cul1 Complex
pdb|4F52|D Chain D, Structure Of A Glomulin-Rbx1-Cul1 Complex
Length = 106
Score = 30.0 bits (66), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 131 CSHLFHVKCVDPWLRLHPTCPV 152
C+H FH C+ WL+ CP+
Sbjct: 73 CNHAFHFHCISRWLKTRQVCPL 94
>pdb|1LDJ|B Chain B, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
pdb|1LDK|C Chain C, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 90
Score = 29.6 bits (65), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 131 CSHLFHVKCVDPWLRLHPTCPV 152
C+H FH C+ WL+ CP+
Sbjct: 57 CNHAFHFHCISRWLKTRQVCPL 78
>pdb|2YQL|A Chain A, Solution Structure Of The Phd Domain In Phd Finger Protein
21a
Length = 56
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 8/47 (17%)
Query: 112 CSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHP----TCPVCR 154
CS+C R S L + CS ++H+ C+DP L+ P CP C+
Sbjct: 12 CSVC----RKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQ 54
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 105 KDSTATCCSICLADYR---SSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCR 154
+ S C IC+ Y + L + +C H+F +C+ L+ TCP CR
Sbjct: 6 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR 58
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 112 CSICLADYR---SSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCR 154
C IC+ Y + L + +C H+F +C+ L+ TCP CR
Sbjct: 10 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR 55
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 112 CSICLADYR---SSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCR 154
C IC+ Y + L + +C H+F +C+ L+ TCP CR
Sbjct: 75 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR 120
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 112 CSICLADYR---SSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCR 154
C IC+ Y + L + +C H+F +C+ L+ TCP CR
Sbjct: 18 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR 63
>pdb|2LN0|A Chain A, Structure Of Moz
Length = 110
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Query: 87 STIKSYPKLPYSEARLQKKDSTATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRL 146
S +K P+L L+ + CS C +++D + C FH++C DP L
Sbjct: 37 SCLKFSPELTVRVKALRWQCIECKTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTR 96
Query: 147 HPT----CPVCR 154
P C +CR
Sbjct: 97 MPKGMWICQICR 108
>pdb|3V43|A Chain A, Crystal Structure Of Moz
Length = 112
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Query: 87 STIKSYPKLPYSEARLQKKDSTATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRL 146
S +K P+L L+ + CS C +++D + C FH++C DP L
Sbjct: 39 SCLKFSPELTVRVKALRWQCIECKTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTR 98
Query: 147 HPT----CPVCR 154
P C +CR
Sbjct: 99 MPKGMWICQICR 110
>pdb|2PUY|A Chain A, Crystal Structure Of The Bhc80 Phd Finger
pdb|2PUY|B Chain B, Crystal Structure Of The Bhc80 Phd Finger
Length = 60
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 8/47 (17%)
Query: 112 CSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHP----TCPVCR 154
CS+C R S L + CS ++H+ C+DP L+ P CP C+
Sbjct: 8 CSVC----RKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQ 50
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 112 CSICLADYR---SSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCR 154
C IC+ Y + L + +C H+F +C+ L+ TCP CR
Sbjct: 6 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR 51
>pdb|4GY5|A Chain A, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|B Chain B, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|C Chain C, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|D Chain D, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
Length = 241
Score = 26.6 bits (57), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 9/59 (15%)
Query: 105 KDSTATCCSICL----ADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPT-----CPVCR 154
KD C +C + D + +C FH+ C+DP L P+ CP CR
Sbjct: 181 KDDVNRLCRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECR 239
>pdb|3ASK|A Chain A, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|B Chain B, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|C Chain C, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|D Chain D, Structure Of Uhrf1 In Complex With Histone Tail
Length = 226
Score = 26.6 bits (57), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 9/59 (15%)
Query: 105 KDSTATCCSICL----ADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPT-----CPVCR 154
KD C +C + D + +C FH+ C+DP L P+ CP CR
Sbjct: 165 KDDVNRLCRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECR 223
>pdb|2Y43|A Chain A, Rad18 Ubiquitin Ligase Ring Domain Structure
pdb|2Y43|B Chain B, Rad18 Ubiquitin Ligase Ring Domain Structure
Length = 99
Score = 26.6 bits (57), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 112 CSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVC 153
C IC + ++ ++P CSH + C+ +L CP C
Sbjct: 25 CGICFEYF---NIAMIIPQCSHNYCSLCIRKFLSYKTQCPTC 63
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,260,792
Number of Sequences: 62578
Number of extensions: 92122
Number of successful extensions: 227
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 187
Number of HSP's gapped (non-prelim): 45
length of query: 177
length of database: 14,973,337
effective HSP length: 92
effective length of query: 85
effective length of database: 9,216,161
effective search space: 783373685
effective search space used: 783373685
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)