Query 037839
Match_columns 177
No_of_seqs 146 out of 1607
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 04:51:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037839.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037839hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4628 Predicted E3 ubiquitin 99.8 3.1E-20 6.8E-25 151.6 7.6 85 83-171 206-291 (348)
2 PF13639 zf-RING_2: Ring finge 99.7 3.1E-17 6.7E-22 96.7 1.5 43 111-154 2-44 (44)
3 PHA02929 N1R/p28-like protein; 99.5 4.6E-14 1E-18 110.8 5.6 77 82-159 148-228 (238)
4 PF12678 zf-rbx1: RING-H2 zinc 99.4 6.2E-14 1.3E-18 91.3 3.0 46 108-154 18-73 (73)
5 COG5540 RING-finger-containing 99.4 4.8E-13 1E-17 106.5 3.7 51 108-159 322-373 (374)
6 KOG0317 Predicted E3 ubiquitin 99.3 1.8E-12 4E-17 102.7 5.9 51 108-162 238-288 (293)
7 COG5243 HRD1 HRD ubiquitin lig 99.3 1E-12 2.2E-17 107.2 4.3 55 106-161 284-348 (491)
8 PLN03208 E3 ubiquitin-protein 99.3 4.3E-12 9.4E-17 96.1 4.2 57 108-168 17-89 (193)
9 KOG0823 Predicted E3 ubiquitin 99.2 9.3E-12 2E-16 96.0 2.8 59 106-168 44-105 (230)
10 cd00162 RING RING-finger (Real 99.2 2.8E-11 6.1E-16 70.4 3.8 44 111-157 1-45 (45)
11 PF13920 zf-C3HC4_3: Zinc fing 99.2 1.9E-11 4.1E-16 73.8 2.7 45 110-158 3-48 (50)
12 PF13923 zf-C3HC4_2: Zinc fing 99.1 2.2E-11 4.8E-16 69.7 2.5 39 112-153 1-39 (39)
13 PF12861 zf-Apc11: Anaphase-pr 99.1 4.6E-11 1E-15 78.9 3.2 52 108-159 20-83 (85)
14 PHA02926 zinc finger-like prot 99.1 1.1E-10 2.3E-15 89.8 3.6 52 108-159 169-231 (242)
15 PF14634 zf-RING_5: zinc-RING 99.0 2.8E-10 6E-15 66.8 3.3 44 111-155 1-44 (44)
16 COG5194 APC11 Component of SCF 99.0 1.7E-10 3.7E-15 74.5 2.2 51 109-159 20-82 (88)
17 KOG0802 E3 ubiquitin ligase [P 99.0 1.7E-10 3.6E-15 101.3 2.8 54 108-162 290-345 (543)
18 PF15227 zf-C3HC4_4: zinc fing 99.0 2.5E-10 5.3E-15 66.4 2.3 38 112-153 1-42 (42)
19 KOG0320 Predicted E3 ubiquitin 99.0 5.4E-10 1.2E-14 83.0 4.5 53 108-162 130-182 (187)
20 PF00097 zf-C3HC4: Zinc finger 98.9 4E-10 8.7E-15 65.0 1.9 39 112-153 1-41 (41)
21 smart00504 Ubox Modified RING 98.9 2E-09 4.2E-14 67.7 4.2 48 110-161 2-49 (63)
22 smart00184 RING Ring finger. E 98.9 1.7E-09 3.7E-14 60.6 3.3 38 112-153 1-39 (39)
23 TIGR00599 rad18 DNA repair pro 98.8 4.7E-09 1E-13 88.2 4.2 50 108-161 25-74 (397)
24 COG5574 PEX10 RING-finger-cont 98.8 3.1E-09 6.8E-14 83.5 2.4 51 108-162 214-266 (271)
25 KOG1734 Predicted RING-contain 98.8 1.4E-09 3.1E-14 85.6 0.4 61 98-159 213-282 (328)
26 KOG2930 SCF ubiquitin ligase, 98.7 4.7E-09 1E-13 71.1 1.9 53 105-157 42-107 (114)
27 KOG1493 Anaphase-promoting com 98.7 3.1E-09 6.7E-14 68.1 -0.8 52 107-158 18-81 (84)
28 KOG2164 Predicted E3 ubiquitin 98.6 5.7E-08 1.2E-12 82.7 6.5 52 109-164 186-242 (513)
29 smart00744 RINGv The RING-vari 98.6 6.5E-08 1.4E-12 58.0 3.1 42 111-154 1-49 (49)
30 PF13445 zf-RING_UBOX: RING-ty 98.6 5.2E-08 1.1E-12 56.7 2.6 38 112-151 1-43 (43)
31 KOG0828 Predicted E3 ubiquitin 98.5 2.5E-07 5.5E-12 78.5 6.2 50 109-159 571-635 (636)
32 KOG4265 Predicted E3 ubiquitin 98.4 1.4E-07 3.1E-12 77.2 2.8 49 107-159 288-337 (349)
33 KOG0287 Postreplication repair 98.4 9.2E-08 2E-12 77.8 1.6 48 109-160 23-70 (442)
34 TIGR00570 cdk7 CDK-activating 98.4 3.9E-07 8.4E-12 74.0 4.2 55 109-164 3-60 (309)
35 PF11793 FANCL_C: FANCL C-term 98.3 7.5E-08 1.6E-12 62.1 -0.4 49 110-158 3-66 (70)
36 COG5432 RAD18 RING-finger-cont 98.3 3.2E-07 6.9E-12 73.3 2.4 47 109-159 25-71 (391)
37 KOG0827 Predicted E3 ubiquitin 98.3 2.8E-07 6.1E-12 76.1 1.6 47 111-157 6-55 (465)
38 PF04564 U-box: U-box domain; 98.3 4.5E-07 9.7E-12 58.9 1.8 50 108-161 3-53 (73)
39 KOG2177 Predicted E3 ubiquitin 98.2 4.9E-07 1.1E-11 72.2 1.9 44 108-155 12-55 (386)
40 COG5219 Uncharacterized conser 98.2 5.5E-07 1.2E-11 81.5 0.8 53 106-158 1466-1523(1525)
41 KOG4172 Predicted E3 ubiquitin 98.1 4.1E-07 9E-12 54.7 -0.3 45 110-158 8-54 (62)
42 KOG0804 Cytoplasmic Zn-finger 98.1 1.2E-06 2.6E-11 73.7 1.2 49 108-159 174-223 (493)
43 PF14835 zf-RING_6: zf-RING of 98.1 8.5E-07 1.8E-11 55.4 0.2 46 110-160 8-53 (65)
44 KOG1645 RING-finger-containing 98.1 3E-06 6.5E-11 70.6 3.3 50 108-157 3-55 (463)
45 KOG3970 Predicted E3 ubiquitin 98.0 3.5E-06 7.7E-11 65.1 3.2 58 109-168 50-116 (299)
46 KOG0825 PHD Zn-finger protein 97.9 1.6E-06 3.5E-11 77.2 -0.5 51 109-160 123-173 (1134)
47 KOG0978 E3 ubiquitin ligase in 97.8 7.8E-06 1.7E-10 72.8 1.3 49 109-161 643-692 (698)
48 KOG4445 Uncharacterized conser 97.8 6.1E-06 1.3E-10 66.3 0.1 52 107-159 113-187 (368)
49 KOG1039 Predicted E3 ubiquitin 97.7 2E-05 4.2E-10 65.4 2.6 52 107-158 159-221 (344)
50 KOG1785 Tyrosine kinase negati 97.7 1.1E-05 2.3E-10 67.3 0.5 50 106-159 366-417 (563)
51 KOG0824 Predicted E3 ubiquitin 97.6 2.9E-05 6.3E-10 62.5 2.1 49 109-161 7-56 (324)
52 KOG0311 Predicted E3 ubiquitin 97.6 8.2E-06 1.8E-10 66.9 -1.7 49 108-159 42-91 (381)
53 PF11789 zf-Nse: Zinc-finger o 97.4 7E-05 1.5E-09 46.2 1.2 41 109-152 11-53 (57)
54 KOG1952 Transcription factor N 97.3 0.00019 4.2E-09 64.8 3.9 53 106-158 188-247 (950)
55 KOG1428 Inhibitor of type V ad 97.3 0.00013 2.8E-09 69.2 2.9 53 106-159 3483-3545(3738)
56 PHA02862 5L protein; Provision 97.2 0.00016 3.5E-09 52.3 1.6 54 110-168 3-63 (156)
57 KOG4159 Predicted E3 ubiquitin 97.2 0.00019 4.2E-09 60.7 2.3 50 107-160 82-131 (398)
58 KOG0297 TNF receptor-associate 97.1 0.00033 7.1E-09 59.5 2.7 52 108-162 20-71 (391)
59 KOG1941 Acetylcholine receptor 97.1 0.00026 5.6E-09 59.1 1.6 46 109-155 365-413 (518)
60 KOG0801 Predicted E3 ubiquitin 97.0 0.00022 4.8E-09 52.6 0.6 29 108-137 176-204 (205)
61 KOG1814 Predicted E3 ubiquitin 97.0 0.00036 7.8E-09 58.5 1.7 48 108-156 183-238 (445)
62 PHA02825 LAP/PHD finger-like p 96.9 0.00077 1.7E-08 49.7 2.9 55 108-166 7-67 (162)
63 PF05883 Baculo_RING: Baculovi 96.9 0.00047 1E-08 49.5 1.6 39 108-147 25-69 (134)
64 KOG1571 Predicted E3 ubiquitin 96.9 0.00051 1.1E-08 56.7 1.7 47 105-158 301-347 (355)
65 KOG4692 Predicted E3 ubiquitin 96.8 0.0012 2.7E-08 54.5 3.8 51 105-159 418-468 (489)
66 PF12906 RINGv: RING-variant d 96.8 0.00072 1.6E-08 40.0 1.8 40 112-153 1-47 (47)
67 COG5152 Uncharacterized conser 96.8 0.00058 1.2E-08 52.1 1.5 45 109-157 196-240 (259)
68 KOG0826 Predicted E3 ubiquitin 96.8 0.0023 4.9E-08 52.4 4.9 48 106-156 297-344 (357)
69 PF14570 zf-RING_4: RING/Ubox 96.7 0.00096 2.1E-08 39.5 1.8 45 112-157 1-47 (48)
70 PF10367 Vps39_2: Vacuolar sor 96.6 0.00073 1.6E-08 46.5 1.0 32 108-141 77-108 (109)
71 KOG2879 Predicted E3 ubiquitin 96.6 0.0023 4.9E-08 51.2 3.5 53 106-161 236-290 (298)
72 KOG4275 Predicted E3 ubiquitin 96.5 0.00041 8.8E-09 55.8 -1.0 41 109-157 300-341 (350)
73 KOG0827 Predicted E3 ubiquitin 96.5 5.9E-05 1.3E-09 62.7 -6.0 52 107-159 194-246 (465)
74 KOG1002 Nucleotide excision re 96.5 0.0013 2.8E-08 57.0 1.7 58 106-168 533-595 (791)
75 KOG3039 Uncharacterized conser 96.4 0.0034 7.4E-08 49.5 3.4 52 110-161 222-273 (303)
76 KOG1813 Predicted E3 ubiquitin 96.3 0.0017 3.7E-08 52.3 1.1 47 109-159 241-287 (313)
77 KOG4739 Uncharacterized protei 96.1 0.0027 5.8E-08 49.9 1.6 47 111-161 5-51 (233)
78 KOG3268 Predicted E3 ubiquitin 96.1 0.005 1.1E-07 46.3 2.7 30 130-159 189-229 (234)
79 PHA03096 p28-like protein; Pro 96.1 0.0035 7.7E-08 50.9 2.0 46 110-155 179-231 (284)
80 KOG2660 Locus-specific chromos 95.9 0.002 4.4E-08 52.6 -0.1 51 108-161 14-64 (331)
81 PF04641 Rtf2: Rtf2 RING-finge 95.7 0.013 2.9E-07 47.0 4.0 52 107-160 111-163 (260)
82 PF14447 Prok-RING_4: Prokaryo 95.7 0.0078 1.7E-07 36.5 2.0 45 111-161 9-53 (55)
83 KOG1940 Zn-finger protein [Gen 95.6 0.0085 1.8E-07 48.3 2.4 46 109-155 158-204 (276)
84 COG5222 Uncharacterized conser 95.5 0.01 2.2E-07 48.2 2.5 53 110-165 275-329 (427)
85 PF08746 zf-RING-like: RING-li 95.5 0.0066 1.4E-07 35.1 1.1 41 112-153 1-43 (43)
86 COG5236 Uncharacterized conser 95.4 0.022 4.7E-07 47.2 4.2 47 107-157 59-107 (493)
87 PF14446 Prok-RING_1: Prokaryo 95.1 0.033 7.1E-07 33.8 3.3 34 109-142 5-38 (54)
88 KOG2114 Vacuolar assembly/sort 95.0 0.011 2.5E-07 53.8 1.6 43 109-157 840-882 (933)
89 KOG4185 Predicted E3 ubiquitin 94.9 0.023 5E-07 46.2 2.9 48 109-157 3-54 (296)
90 KOG0309 Conserved WD40 repeat- 94.7 0.021 4.6E-07 51.6 2.4 25 127-152 1045-1069(1081)
91 KOG2932 E3 ubiquitin ligase in 94.7 0.011 2.4E-07 48.2 0.5 45 109-158 90-134 (389)
92 KOG1100 Predicted E3 ubiquitin 94.5 0.019 4.1E-07 44.7 1.4 40 112-159 161-201 (207)
93 KOG3002 Zn finger protein [Gen 94.4 0.025 5.3E-07 46.4 2.0 44 107-158 46-91 (299)
94 KOG3053 Uncharacterized conser 94.3 0.018 3.9E-07 45.7 1.0 51 108-159 19-83 (293)
95 PF10272 Tmpp129: Putative tra 94.0 0.044 9.5E-07 45.9 2.7 29 131-159 311-352 (358)
96 KOG1001 Helicase-like transcri 93.3 0.029 6.3E-07 50.9 0.5 48 110-162 455-504 (674)
97 KOG3161 Predicted E3 ubiquitin 93.0 0.032 7E-07 49.6 0.4 45 109-156 11-55 (861)
98 PF07800 DUF1644: Protein of u 92.6 0.14 3.1E-06 37.9 3.2 32 110-144 3-46 (162)
99 KOG2817 Predicted E3 ubiquitin 92.5 0.11 2.4E-06 43.7 2.9 47 108-155 333-382 (394)
100 KOG2034 Vacuolar sorting prote 92.1 0.069 1.5E-06 49.1 1.3 35 108-144 816-850 (911)
101 KOG0298 DEAD box-containing he 92.0 0.054 1.2E-06 51.6 0.5 47 109-158 1153-1199(1394)
102 KOG1812 Predicted E3 ubiquitin 91.6 0.07 1.5E-06 45.3 0.7 52 109-161 146-206 (384)
103 COG5175 MOT2 Transcriptional r 91.4 0.16 3.5E-06 42.1 2.6 54 108-161 13-67 (480)
104 PF05290 Baculo_IE-1: Baculovi 91.2 0.21 4.6E-06 35.9 2.7 54 108-161 79-135 (140)
105 PF03854 zf-P11: P-11 zinc fin 91.0 0.081 1.8E-06 31.1 0.4 27 131-157 18-45 (50)
106 PF08693 SKG6: Transmembrane a 91.0 0.1 2.2E-06 29.6 0.8 21 23-43 13-33 (40)
107 COG5183 SSM4 Protein involved 90.5 0.18 3.8E-06 46.3 2.2 57 106-163 9-71 (1175)
108 KOG3899 Uncharacterized conser 90.3 0.14 3.1E-06 41.5 1.3 31 131-161 325-368 (381)
109 KOG3800 Predicted E3 ubiquitin 89.2 0.17 3.6E-06 41.0 0.9 58 111-168 2-61 (300)
110 KOG1609 Protein involved in mR 88.7 0.24 5.2E-06 40.3 1.6 51 109-160 78-136 (323)
111 PF04478 Mid2: Mid2 like cell 88.2 0.27 5.9E-06 36.2 1.4 31 21-51 50-80 (154)
112 PRK06287 cobalt transport prot 86.8 1.2 2.6E-05 30.9 3.9 38 9-48 67-104 (107)
113 PF02891 zf-MIZ: MIZ/SP-RING z 86.3 0.8 1.7E-05 27.2 2.5 42 111-156 4-50 (50)
114 COG5220 TFB3 Cdk activating ki 85.8 0.18 3.9E-06 39.9 -0.7 64 109-172 10-78 (314)
115 PF01102 Glycophorin_A: Glycop 85.7 1.1 2.4E-05 31.8 3.4 13 39-51 82-94 (122)
116 KOG0269 WD40 repeat-containing 85.3 0.7 1.5E-05 42.2 2.6 40 111-152 781-820 (839)
117 KOG4362 Transcriptional regula 84.7 0.24 5.2E-06 44.7 -0.5 47 109-159 21-70 (684)
118 PF05568 ASFV_J13L: African sw 84.4 2 4.2E-05 31.5 4.1 28 25-52 32-59 (189)
119 smart00132 LIM Zinc-binding do 84.1 0.97 2.1E-05 24.3 2.0 37 112-158 2-38 (39)
120 PF01034 Syndecan: Syndecan do 83.3 0.37 8E-06 30.2 0.0 26 24-49 15-40 (64)
121 PF07975 C1_4: TFIIH C1-like d 83.1 0.77 1.7E-05 27.5 1.4 43 112-154 2-50 (51)
122 PF13901 DUF4206: Domain of un 83.0 0.96 2.1E-05 35.0 2.3 41 109-155 152-197 (202)
123 KOG0825 PHD Zn-finger protein 82.9 0.76 1.6E-05 42.2 1.8 53 107-159 94-155 (1134)
124 KOG4367 Predicted Zn-finger pr 82.6 0.76 1.6E-05 39.5 1.7 35 108-146 3-37 (699)
125 PTZ00370 STEVOR; Provisional 82.0 1.5 3.3E-05 35.6 3.1 29 20-48 254-282 (296)
126 PF11023 DUF2614: Protein of u 81.6 3.7 8E-05 28.7 4.5 20 142-161 80-99 (114)
127 PF01102 Glycophorin_A: Glycop 80.7 2.3 5E-05 30.3 3.3 32 21-52 67-98 (122)
128 PF02009 Rifin_STEVOR: Rifin/s 79.8 1.3 2.7E-05 36.5 2.0 28 23-50 256-283 (299)
129 TIGR00622 ssl1 transcription f 79.7 2.9 6.3E-05 29.3 3.5 45 110-154 56-110 (112)
130 KOG2066 Vacuolar assembly/sort 78.8 0.8 1.7E-05 42.0 0.6 43 109-153 784-830 (846)
131 KOG0802 E3 ubiquitin ligase [P 78.6 1.4 3E-05 39.2 2.0 45 108-160 478-522 (543)
132 PF01363 FYVE: FYVE zinc finge 78.5 1 2.3E-05 28.2 0.9 36 108-143 8-43 (69)
133 PF05393 Hum_adeno_E3A: Human 77.9 4.3 9.4E-05 27.1 3.7 10 20-29 32-41 (94)
134 smart00249 PHD PHD zinc finger 77.9 1.4 3.1E-05 24.6 1.4 30 112-142 2-31 (47)
135 PRK09458 pspB phage shock prot 77.7 2.6 5.7E-05 27.3 2.6 26 26-51 8-33 (75)
136 KOG3842 Adaptor protein Pellin 77.2 2.7 5.8E-05 34.7 3.1 53 107-160 339-416 (429)
137 PF06906 DUF1272: Protein of u 76.9 4.6 9.9E-05 24.6 3.3 46 111-161 7-55 (57)
138 KOG3113 Uncharacterized conser 75.5 2.8 6E-05 33.6 2.7 50 108-160 110-160 (293)
139 PTZ00046 rifin; Provisional 75.4 2.2 4.8E-05 35.8 2.3 32 21-52 313-344 (358)
140 PF00628 PHD: PHD-finger; Int 75.2 1.6 3.4E-05 25.5 1.0 42 112-154 2-49 (51)
141 KOG1829 Uncharacterized conser 75.1 0.91 2E-05 40.5 -0.1 42 109-154 511-557 (580)
142 PF02009 Rifin_STEVOR: Rifin/s 75.1 2.5 5.4E-05 34.8 2.5 36 16-51 253-288 (299)
143 PF00412 LIM: LIM domain; Int 75.0 1.7 3.6E-05 25.9 1.1 40 112-161 1-40 (58)
144 TIGR01477 RIFIN variant surfac 74.9 2.5 5.4E-05 35.5 2.4 31 22-52 309-339 (353)
145 PF15179 Myc_target_1: Myc tar 74.6 5.8 0.00013 30.2 4.1 35 1-35 1-35 (197)
146 PRK11486 flagellar biosynthesi 73.7 8.4 0.00018 27.5 4.5 28 22-49 16-43 (124)
147 KOG1815 Predicted E3 ubiquitin 73.6 2.3 5E-05 36.8 2.0 51 108-161 69-129 (444)
148 PF06667 PspB: Phage shock pro 73.3 6.8 0.00015 25.4 3.7 25 25-49 7-31 (75)
149 PF15048 OSTbeta: Organic solu 72.7 7.4 0.00016 27.7 4.0 34 12-45 26-59 (125)
150 PF13908 Shisa: Wnt and FGF in 72.6 7.6 0.00016 29.2 4.5 6 27-32 84-89 (179)
151 KOG4718 Non-SMC (structural ma 71.8 2.2 4.8E-05 33.2 1.3 42 109-153 181-222 (235)
152 cd00350 rubredoxin_like Rubred 71.7 2.7 5.9E-05 22.5 1.3 21 130-156 6-26 (33)
153 PF12768 Rax2: Cortical protei 70.8 5.1 0.00011 32.7 3.3 29 23-51 232-260 (281)
154 KOG2807 RNA polymerase II tran 70.5 5 0.00011 33.3 3.1 46 109-155 330-375 (378)
155 KOG1812 Predicted E3 ubiquitin 69.2 2.4 5.1E-05 36.1 1.1 44 109-153 306-351 (384)
156 PRK14750 kdpF potassium-transp 69.1 9.8 0.00021 19.8 2.9 21 23-43 1-21 (29)
157 PF06024 DUF912: Nucleopolyhed 68.6 4.3 9.3E-05 27.8 2.1 17 28-44 68-84 (101)
158 PF13717 zinc_ribbon_4: zinc-r 68.4 2.9 6.2E-05 23.0 1.0 25 111-136 4-36 (36)
159 smart00064 FYVE Protein presen 68.2 5.2 0.00011 24.8 2.3 36 109-144 10-45 (68)
160 PF08114 PMP1_2: ATPase proteo 67.8 2.6 5.7E-05 23.9 0.8 17 33-49 17-33 (43)
161 cd00065 FYVE FYVE domain; Zinc 67.6 4.8 0.0001 23.9 2.0 35 110-144 3-37 (57)
162 COG5109 Uncharacterized conser 67.6 4.8 0.0001 33.3 2.5 44 109-153 336-382 (396)
163 PF07213 DAP10: DAP10 membrane 67.6 15 0.00032 24.1 4.3 27 26-52 38-64 (79)
164 PF13719 zinc_ribbon_5: zinc-r 66.4 3.8 8.1E-05 22.6 1.2 25 111-136 4-36 (37)
165 PTZ00046 rifin; Provisional 66.0 3.6 7.8E-05 34.6 1.5 37 16-52 312-348 (358)
166 TIGR03141 cytochro_ccmD heme e 65.8 7.5 0.00016 22.4 2.5 30 20-49 3-32 (45)
167 TIGR01477 RIFIN variant surfac 65.7 3.9 8.4E-05 34.3 1.7 37 16-52 307-343 (353)
168 KOG3039 Uncharacterized conser 65.5 5.2 0.00011 32.0 2.2 33 108-144 42-74 (303)
169 PF08374 Protocadherin: Protoc 65.2 5.8 0.00012 31.0 2.4 26 19-44 35-60 (221)
170 PF05393 Hum_adeno_E3A: Human 65.0 10 0.00023 25.3 3.3 31 22-52 30-61 (94)
171 PF15102 TMEM154: TMEM154 prot 64.6 7.3 0.00016 28.6 2.7 13 32-44 70-82 (146)
172 PRK00523 hypothetical protein; 64.3 9.3 0.0002 24.5 2.8 30 22-51 3-32 (72)
173 PF04710 Pellino: Pellino; In 64.2 2.8 6.1E-05 35.6 0.6 66 87-156 255-337 (416)
174 TIGR02976 phageshock_pspB phag 64.0 13 0.00029 24.0 3.6 24 27-50 9-32 (75)
175 PF10571 UPF0547: Uncharacteri 63.7 4.5 9.7E-05 20.6 1.1 22 112-135 3-24 (26)
176 KOG3005 GIY-YIG type nuclease 63.5 4.7 0.0001 32.5 1.7 48 110-157 183-242 (276)
177 COG4736 CcoQ Cbb3-type cytochr 63.5 17 0.00038 22.5 3.9 25 28-52 12-36 (60)
178 PF13209 DUF4017: Protein of u 63.5 7.9 0.00017 23.4 2.3 37 12-48 23-59 (60)
179 PHA02844 putative transmembran 62.9 12 0.00026 24.1 3.2 11 15-25 42-52 (75)
180 PF13190 PDGLE: PDGLE domain 62.2 14 0.0003 24.6 3.6 35 9-43 53-87 (88)
181 PF14991 MLANA: Protein melan- 61.6 1.9 4E-05 30.2 -0.7 16 37-52 39-54 (118)
182 PF06676 DUF1178: Protein of u 61.4 2.4 5.2E-05 31.2 -0.2 28 131-163 10-48 (148)
183 PF07406 NICE-3: NICE-3 protei 61.3 8.7 0.00019 29.4 2.8 31 13-43 3-33 (186)
184 PF04710 Pellino: Pellino; In 61.3 2.7 5.9E-05 35.7 0.0 52 109-161 328-404 (416)
185 PTZ00382 Variant-specific surf 60.6 5.9 0.00013 26.9 1.6 6 42-47 88-93 (96)
186 PF04995 CcmD: Heme exporter p 60.6 7.8 0.00017 22.4 1.9 22 20-41 2-23 (46)
187 PHA02849 putative transmembran 60.3 17 0.00037 23.7 3.5 22 20-41 13-34 (82)
188 KOG3842 Adaptor protein Pellin 59.4 3.6 7.8E-05 34.0 0.4 48 102-155 283-349 (429)
189 PF15050 SCIMP: SCIMP protein 59.2 9.1 0.0002 27.1 2.3 18 26-43 11-28 (133)
190 PF10083 DUF2321: Uncharacteri 58.3 6.6 0.00014 29.1 1.6 46 113-161 8-53 (158)
191 PF14575 EphA2_TM: Ephrin type 56.8 16 0.00034 23.6 3.0 23 27-50 6-28 (75)
192 PF04971 Lysis_S: Lysis protei 56.6 14 0.00031 23.4 2.6 30 23-52 34-63 (68)
193 PF10717 ODV-E18: Occlusion-de 56.0 42 0.00092 22.2 4.9 17 16-32 17-33 (85)
194 COG1862 YajC Preprotein transl 55.9 11 0.00024 25.7 2.2 15 34-48 14-28 (97)
195 KOG3637 Vitronectin receptor, 55.8 16 0.00035 35.2 4.1 32 18-49 976-1009(1030)
196 PRK14748 kdpF potassium-transp 55.6 24 0.00051 18.4 2.9 19 24-42 2-20 (29)
197 PF14654 Epiglycanin_C: Mucin, 54.8 23 0.00051 24.1 3.6 36 6-48 9-44 (106)
198 PF06365 CD34_antigen: CD34/Po 54.7 13 0.00029 28.8 2.8 25 27-51 106-130 (202)
199 PF02480 Herpes_gE: Alphaherpe 54.6 4.1 8.9E-05 35.3 0.0 30 20-49 350-379 (439)
200 PF15176 LRR19-TM: Leucine-ric 54.6 24 0.00053 24.1 3.7 25 18-42 14-38 (102)
201 PF09680 Tiny_TM_bacill: Prote 54.6 16 0.00034 18.2 2.1 13 22-34 5-17 (24)
202 PF05454 DAG1: Dystroglycan (D 54.5 4.1 8.9E-05 33.3 0.0 10 42-51 166-175 (290)
203 PF05715 zf-piccolo: Piccolo Z 53.8 10 0.00022 23.4 1.6 11 148-158 3-13 (61)
204 PTZ00382 Variant-specific surf 53.6 5.8 0.00013 26.9 0.6 7 29-35 79-85 (96)
205 PF14569 zf-UDP: Zinc-binding 53.3 25 0.00054 22.9 3.5 59 108-166 8-70 (80)
206 PF00957 Synaptobrevin: Synapt 53.1 16 0.00034 24.0 2.7 22 24-45 67-88 (89)
207 PLN02189 cellulose synthase 53.1 24 0.00052 33.9 4.7 60 108-167 33-96 (1040)
208 KOG4577 Transcription factor L 52.7 3.2 6.9E-05 33.9 -0.9 39 109-157 92-130 (383)
209 PF06844 DUF1244: Protein of u 51.8 9.4 0.0002 24.1 1.3 11 135-145 12-22 (68)
210 PF04423 Rad50_zn_hook: Rad50 51.6 4.4 9.5E-05 24.2 -0.2 11 149-159 22-32 (54)
211 PF12877 DUF3827: Domain of un 51.5 24 0.00052 32.1 4.2 35 18-52 266-301 (684)
212 PF05624 LSR: Lipolysis stimul 51.5 20 0.00043 20.9 2.5 20 22-41 3-22 (49)
213 PF11980 DUF3481: Domain of un 50.8 24 0.00052 23.4 3.1 34 18-51 12-46 (87)
214 PF14169 YdjO: Cold-inducible 50.7 8.5 0.00018 23.7 1.0 14 147-160 39-52 (59)
215 KOG2068 MOT2 transcription fac 50.7 14 0.0003 30.7 2.5 50 109-159 249-299 (327)
216 PF06679 DUF1180: Protein of u 50.3 57 0.0012 24.4 5.5 10 25-34 98-107 (163)
217 PF05399 EVI2A: Ectropic viral 50.2 19 0.00042 28.0 3.0 16 26-41 134-149 (227)
218 PF13908 Shisa: Wnt and FGF in 50.2 20 0.00044 26.8 3.2 17 23-39 76-92 (179)
219 PF07204 Orthoreo_P10: Orthore 49.3 9.6 0.00021 25.8 1.1 22 30-52 50-71 (98)
220 KOG1729 FYVE finger containing 49.1 3.2 6.8E-05 34.0 -1.5 39 109-148 214-252 (288)
221 PF14979 TMEM52: Transmembrane 48.9 26 0.00056 25.7 3.4 32 20-51 19-51 (154)
222 PRK01844 hypothetical protein; 48.7 23 0.0005 22.7 2.8 25 25-49 5-29 (72)
223 PF03229 Alpha_GJ: Alphavirus 48.7 35 0.00076 24.0 3.8 26 23-48 84-109 (126)
224 PF15330 SIT: SHP2-interacting 48.5 22 0.00047 24.7 2.8 16 26-41 4-19 (107)
225 PF14851 FAM176: FAM176 family 48.3 34 0.00073 25.3 4.0 16 23-38 26-41 (153)
226 PHA02819 hypothetical protein; 48.3 34 0.00074 21.8 3.4 12 14-25 39-50 (71)
227 PRK11827 hypothetical protein; 48.3 7.2 0.00016 24.1 0.4 19 142-160 3-21 (60)
228 KOG3579 Predicted E3 ubiquitin 48.2 15 0.00033 30.0 2.3 39 108-146 267-305 (352)
229 PHA03265 envelope glycoprotein 47.7 19 0.00041 30.3 2.8 15 38-52 364-378 (402)
230 PF14946 DUF4501: Domain of un 47.4 73 0.0016 23.9 5.5 37 16-52 82-121 (180)
231 COG1592 Rubrerythrin [Energy p 47.0 11 0.00024 28.2 1.3 25 125-156 134-158 (166)
232 PHA03099 epidermal growth fact 46.9 20 0.00044 25.7 2.5 10 27-36 105-114 (139)
233 PF13314 DUF4083: Domain of un 46.6 16 0.00035 22.3 1.7 8 21-28 6-13 (58)
234 PF06305 DUF1049: Protein of u 46.5 9 0.00019 23.7 0.6 13 3-15 3-15 (68)
235 PF06937 EURL: EURL protein; 46.3 19 0.00041 29.1 2.5 43 109-151 30-74 (285)
236 PF10497 zf-4CXXC_R1: Zinc-fin 46.2 33 0.00072 23.6 3.5 24 132-155 37-69 (105)
237 PRK13415 flagella biosynthesis 45.2 38 0.00082 26.6 4.0 33 16-48 60-92 (219)
238 PF07191 zinc-ribbons_6: zinc- 45.1 1.7 3.7E-05 27.8 -2.8 40 111-159 3-42 (70)
239 PF11770 GAPT: GRB2-binding ad 45.1 6.8 0.00015 28.8 -0.1 27 22-48 11-37 (158)
240 KOG0824 Predicted E3 ubiquitin 44.5 18 0.00038 29.8 2.1 49 108-159 104-152 (324)
241 PF14914 LRRC37AB_C: LRRC37A/B 44.1 31 0.00068 25.3 3.2 7 18-24 112-118 (154)
242 PF09723 Zn-ribbon_8: Zinc rib 44.0 5.8 0.00012 22.5 -0.5 25 130-155 10-34 (42)
243 PRK04778 septation ring format 43.8 19 0.00042 32.2 2.5 25 27-51 5-29 (569)
244 PF10873 DUF2668: Protein of u 43.6 31 0.00067 25.3 3.1 25 13-37 58-82 (155)
245 PF09451 ATG27: Autophagy-rela 43.4 38 0.00083 27.2 4.0 9 87-95 241-249 (268)
246 PF12259 DUF3609: Protein of u 43.0 41 0.00088 28.5 4.2 27 18-44 293-320 (361)
247 PLN02436 cellulose synthase A 42.2 45 0.00098 32.3 4.7 60 108-167 35-98 (1094)
248 PF14311 DUF4379: Domain of un 41.8 17 0.00037 21.6 1.3 23 130-153 33-55 (55)
249 smart00647 IBR In Between Ring 41.6 8.6 0.00019 23.1 -0.0 18 126-143 41-58 (64)
250 KOG2041 WD40 repeat protein [G 41.1 19 0.00041 33.4 2.0 47 109-159 1131-1186(1189)
251 PF13832 zf-HC5HC2H_2: PHD-zin 41.1 20 0.00044 24.4 1.8 33 109-142 55-87 (110)
252 PF04341 DUF485: Protein of un 41.1 32 0.0007 22.9 2.7 29 22-50 51-79 (91)
253 PF05545 FixQ: Cbb3-type cytoc 40.9 47 0.001 19.2 3.1 7 42-48 27-33 (49)
254 PF10577 UPF0560: Uncharacteri 40.9 29 0.00064 32.3 3.2 18 36-53 288-305 (807)
255 PF07649 C1_3: C1-like domain; 39.9 27 0.00058 18.0 1.8 29 111-140 2-30 (30)
256 PF11395 DUF2873: Protein of u 39.2 50 0.0011 18.3 2.7 10 31-40 16-25 (43)
257 cd00729 rubredoxin_SM Rubredox 39.0 21 0.00045 19.2 1.3 21 130-156 7-27 (34)
258 PHA03054 IMV membrane protein; 38.6 59 0.0013 20.8 3.4 10 16-25 43-52 (72)
259 PF13179 DUF4006: Family of un 38.5 28 0.0006 22.0 1.9 18 16-33 11-28 (66)
260 PF07245 Phlebovirus_G2: Phleb 38.1 11 0.00025 33.3 0.2 11 26-36 471-481 (507)
261 PRK11901 hypothetical protein; 37.8 31 0.00067 28.7 2.6 20 23-42 36-55 (327)
262 KOG2979 Protein involved in DN 37.8 17 0.00037 29.2 1.1 41 109-152 176-218 (262)
263 TIGR01732 tiny_TM_bacill conse 36.7 39 0.00085 17.2 1.9 6 23-28 8-13 (26)
264 PF15353 HECA: Headcase protei 36.3 24 0.00051 24.4 1.5 13 131-143 40-52 (107)
265 KOG2231 Predicted E3 ubiquitin 35.7 40 0.00087 30.9 3.2 53 111-167 2-61 (669)
266 PF09125 COX2-transmemb: Cytoc 35.5 65 0.0014 17.8 2.8 17 27-43 17-33 (38)
267 PHA02844 putative transmembran 35.4 1E+02 0.0022 19.9 4.2 32 15-46 39-70 (75)
268 COG5627 MMS21 DNA repair prote 35.2 19 0.00041 28.6 0.9 48 109-159 189-240 (275)
269 COG3114 CcmD Heme exporter pro 35.1 11 0.00024 23.6 -0.3 31 12-42 6-36 (67)
270 KOG2071 mRNA cleavage and poly 34.5 20 0.00044 32.1 1.1 34 108-143 512-556 (579)
271 COG4357 Zinc finger domain con 34.2 35 0.00076 23.2 2.0 29 131-160 65-93 (105)
272 COG3763 Uncharacterized protei 34.1 57 0.0012 20.8 2.8 22 26-47 6-27 (71)
273 PF07438 DUF1514: Protein of u 33.6 41 0.00088 21.1 2.0 15 23-37 3-17 (66)
274 PF09777 OSTMP1: Osteopetrosis 33.1 53 0.0012 26.0 3.2 30 21-50 189-218 (237)
275 PF06024 DUF912: Nucleopolyhed 33.0 95 0.0021 21.1 4.1 27 21-48 58-84 (101)
276 PF12297 EVC2_like: Ellis van 32.8 49 0.0011 28.5 3.1 28 10-37 57-84 (429)
277 PF02318 FYVE_2: FYVE-type zin 32.5 32 0.0007 24.0 1.8 34 108-142 53-88 (118)
278 PF06160 EzrA: Septation ring 32.5 20 0.00044 32.0 0.9 23 29-51 3-25 (560)
279 PF09472 MtrF: Tetrahydrometha 32.2 23 0.00051 22.2 0.8 19 20-38 42-60 (64)
280 COG2835 Uncharacterized conser 31.8 22 0.00048 22.0 0.7 11 149-159 10-20 (60)
281 KOG1815 Predicted E3 ubiquitin 31.8 16 0.00034 31.7 0.0 37 110-146 227-267 (444)
282 TIGR00686 phnA alkylphosphonat 31.8 28 0.0006 24.2 1.2 24 111-134 4-28 (109)
283 PHA03164 hypothetical protein; 31.6 36 0.00079 22.1 1.7 9 37-45 73-81 (88)
284 PF07423 DUF1510: Protein of u 31.4 40 0.00087 26.4 2.2 19 27-45 18-36 (217)
285 COG3813 Uncharacterized protei 30.5 43 0.00094 21.5 1.9 29 132-162 28-56 (84)
286 PF15298 AJAP1_PANP_C: AJAP1/P 29.9 33 0.00071 26.5 1.5 13 38-50 117-129 (205)
287 KOG1245 Chromatin remodeling c 29.9 17 0.00038 36.1 -0.0 50 107-157 1106-1159(1404)
288 KOG4443 Putative transcription 29.7 29 0.00062 31.6 1.3 26 130-155 40-70 (694)
289 PF10146 zf-C4H2: Zinc finger- 29.4 44 0.00096 26.4 2.2 25 136-160 197-221 (230)
290 PF05961 Chordopox_A13L: Chord 29.2 1E+02 0.0022 19.5 3.3 11 27-37 6-16 (68)
291 PF15168 TRIQK: Triple QxxK/R 29.2 76 0.0016 20.6 2.8 19 26-44 53-71 (79)
292 PF05568 ASFV_J13L: African sw 29.0 79 0.0017 23.3 3.2 27 23-49 34-60 (189)
293 PHA02692 hypothetical protein; 28.9 1.3E+02 0.0027 19.2 3.8 6 20-25 44-49 (70)
294 COG4306 Uncharacterized protei 28.7 36 0.00078 24.4 1.4 24 134-160 29-52 (160)
295 PF04210 MtrG: Tetrahydrometha 28.5 60 0.0013 20.7 2.2 15 26-40 52-66 (70)
296 PF03988 DUF347: Repeat of Unk 28.4 1.1E+02 0.0024 18.2 3.4 16 19-34 25-40 (55)
297 COG4477 EzrA Negative regulato 28.2 46 0.001 29.7 2.3 26 27-52 4-29 (570)
298 COG3492 Uncharacterized protei 28.2 30 0.00065 23.3 0.9 12 135-146 43-54 (104)
299 smart00734 ZnF_Rad18 Rad18-lik 28.1 30 0.00066 17.4 0.7 9 149-157 3-11 (26)
300 PF13771 zf-HC5HC2H: PHD-like 27.8 39 0.00084 21.9 1.4 33 109-142 36-68 (90)
301 KOG4451 Uncharacterized conser 27.7 44 0.00095 26.5 1.9 27 135-161 251-277 (286)
302 KOG3653 Transforming growth fa 26.9 1.3E+02 0.0028 26.8 4.6 11 137-147 292-302 (534)
303 PRK10220 hypothetical protein; 26.5 49 0.0011 23.0 1.7 24 111-134 5-29 (111)
304 KOG1094 Discoidin domain recep 25.8 88 0.0019 28.7 3.6 7 6-12 374-380 (807)
305 PF15106 TMEM156: TMEM156 prot 25.8 86 0.0019 24.5 3.1 23 28-50 180-202 (226)
306 COG4325 Predicted membrane pro 25.7 96 0.0021 26.7 3.6 35 15-49 151-185 (464)
307 PF02060 ISK_Channel: Slow vol 25.6 88 0.0019 22.4 2.9 27 23-49 45-71 (129)
308 COG2991 Uncharacterized protei 25.6 1E+02 0.0022 19.9 2.9 27 26-52 5-31 (77)
309 PF13453 zf-TFIIB: Transcripti 25.5 26 0.00057 19.5 0.2 14 149-162 1-14 (41)
310 KOG1538 Uncharacterized conser 25.3 35 0.00075 31.5 1.0 33 125-157 1044-1076(1081)
311 PF06422 PDR_CDR: CDR ABC tran 25.3 1.3E+02 0.0029 20.4 3.7 25 23-47 50-74 (103)
312 PF14914 LRRC37AB_C: LRRC37A/B 25.3 94 0.002 22.9 3.1 25 16-40 113-138 (154)
313 PF07282 OrfB_Zn_ribbon: Putat 25.0 62 0.0014 19.9 1.9 33 110-142 29-63 (69)
314 PF08274 PhnA_Zn_Ribbon: PhnA 24.5 25 0.00054 18.5 0.0 24 111-134 4-28 (30)
315 PRK05978 hypothetical protein; 24.3 50 0.0011 24.3 1.5 25 132-161 42-66 (148)
316 KOG2952 Cell cycle control pro 24.3 1E+02 0.0022 26.0 3.4 38 10-49 302-339 (351)
317 PRK01343 zinc-binding protein; 24.2 49 0.0011 20.2 1.2 13 147-159 9-21 (57)
318 PHA03030 hypothetical protein; 23.9 76 0.0016 21.9 2.2 8 40-47 16-23 (122)
319 PF08391 Ly49: Ly49-like prote 23.8 26 0.00057 24.8 0.0 19 24-42 6-24 (119)
320 KOG4323 Polycomb-like PHD Zn-f 23.7 51 0.0011 28.9 1.7 50 109-158 168-226 (464)
321 PF05191 ADK_lid: Adenylate ki 23.7 32 0.00069 18.8 0.3 27 129-157 5-31 (36)
322 PF06750 DiS_P_DiS: Bacterial 23.7 1.1E+02 0.0024 20.4 3.0 37 110-159 34-70 (92)
323 PF00974 Rhabdo_glycop: Rhabdo 23.5 27 0.00058 30.9 0.0 29 20-48 450-478 (501)
324 PHA03029 hypothetical protein; 23.4 54 0.0012 21.2 1.4 28 19-46 5-32 (92)
325 KOG2462 C2H2-type Zn-finger pr 23.2 35 0.00076 27.7 0.6 48 108-159 160-227 (279)
326 PRK01026 tetrahydromethanopter 23.1 99 0.0021 20.1 2.5 16 26-41 55-70 (77)
327 PF11241 DUF3043: Protein of u 22.9 60 0.0013 24.5 1.8 33 2-34 59-93 (170)
328 PF07227 DUF1423: Protein of u 22.9 50 0.0011 28.7 1.5 31 110-142 129-163 (446)
329 PRK11088 rrmA 23S rRNA methylt 22.9 59 0.0013 25.9 1.9 25 110-135 3-27 (272)
330 PF00737 PsbH: Photosystem II 22.8 1.8E+02 0.004 17.4 5.0 27 15-41 16-42 (52)
331 CHL00066 psbH photosystem II p 22.7 2.2E+02 0.0048 18.3 4.3 27 15-41 31-57 (73)
332 PF11337 DUF3139: Protein of u 22.6 1.2E+02 0.0026 19.7 3.1 9 83-91 48-56 (85)
333 PRK01741 cell division protein 22.5 85 0.0018 26.3 2.7 19 25-43 6-24 (332)
334 KOG1140 N-end rule pathway, re 22.3 45 0.00098 33.9 1.3 15 131-145 1151-1165(1738)
335 PRK13275 mtrF tetrahydromethan 22.2 66 0.0014 20.4 1.6 17 21-37 43-59 (67)
336 PF02480 Herpes_gE: Alphaherpe 22.1 30 0.00064 30.1 0.0 37 16-52 349-385 (439)
337 CHL00019 atpF ATP synthase CF0 22.1 1.1E+02 0.0024 23.0 3.1 9 36-44 36-44 (184)
338 PF03107 C1_2: C1 domain; Int 22.0 56 0.0012 16.8 1.1 28 111-139 2-29 (30)
339 PLN00055 photosystem II reacti 21.8 2.3E+02 0.005 18.2 4.6 27 15-41 31-57 (73)
340 PF15106 TMEM156: TMEM156 prot 21.7 89 0.0019 24.5 2.5 28 23-50 179-206 (226)
341 PF12297 EVC2_like: Ellis van 21.5 1.1E+02 0.0023 26.6 3.2 30 22-51 64-94 (429)
342 KOG1973 Chromatin remodeling p 21.2 21 0.00045 29.0 -1.1 28 130-157 239-269 (274)
343 PRK10905 cell division protein 21.2 64 0.0014 26.9 1.7 14 28-41 3-16 (328)
344 PRK00418 DNA gyrase inhibitor; 21.1 50 0.0011 20.5 0.9 11 148-158 7-17 (62)
345 TIGR01149 mtrG N5-methyltetrah 21.1 95 0.0021 19.8 2.1 10 26-35 52-61 (70)
346 PF00130 C1_1: Phorbol esters/ 21.0 80 0.0017 18.2 1.8 34 108-142 10-45 (53)
347 COG1545 Predicted nucleic-acid 20.9 53 0.0011 23.8 1.1 20 130-157 34-53 (140)
348 COG3364 Zn-ribbon containing p 20.8 60 0.0013 22.4 1.3 23 131-157 8-30 (112)
349 KOG4812 Golgi-associated prote 20.7 1.5E+02 0.0033 23.7 3.6 27 8-34 211-237 (262)
350 PF14584 DUF4446: Protein of u 20.7 90 0.0019 23.0 2.3 11 109-119 97-107 (151)
351 PF01286 XPA_N: XPA protein N- 20.6 15 0.00032 20.0 -1.4 20 131-154 9-28 (34)
352 PF12263 DUF3611: Protein of u 20.6 1.6E+02 0.0035 22.4 3.7 30 15-44 49-79 (183)
353 smart00531 TFIIE Transcription 20.4 98 0.0021 22.4 2.5 13 148-160 124-136 (147)
354 TIGR02205 septum_zipA cell div 20.4 73 0.0016 26.1 1.9 23 25-47 5-27 (284)
355 KOG4482 Sarcoglycan complex, a 20.0 77 0.0017 27.1 2.0 23 25-47 301-323 (449)
No 1
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=3.1e-20 Score=151.55 Aligned_cols=85 Identities=39% Similarity=0.823 Sum_probs=71.2
Q ss_pred CCCHHHHhhCCCccchhhhhccCCCCcccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCC-CCcCCCCCCCCCC
Q 037839 83 GLDESTIKSYPKLPYSEARLQKKDSTATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHP-TCPVCRTSPLPTP 161 (177)
Q Consensus 83 ~l~~~~~~~~p~~~~~~~~~~~~~~~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~-~CP~CR~~~~~~~ 161 (177)
.+.+..++++|...|......... ..|+||||+|+.+|.+|.|| |+|.||..||+.|+.+.+ .||+||+++....
T Consensus 206 r~~k~~l~~~p~~~f~~~~~~~~~---~~CaIClEdY~~GdklRiLP-C~H~FH~~CIDpWL~~~r~~CPvCK~di~~~~ 281 (348)
T KOG4628|consen 206 RLIKRLLKKLPVRTFTKGDDEDAT---DTCAICLEDYEKGDKLRILP-CSHKFHVNCIDPWLTQTRTFCPVCKRDIRTDS 281 (348)
T ss_pred hhHHHHHhhCCcEEeccccccCCC---ceEEEeecccccCCeeeEec-CCCchhhccchhhHhhcCccCCCCCCcCCCCC
Confidence 477888999999888875532221 57999999999999999999 999999999999998775 5999999998877
Q ss_pred CCCCcccccC
Q 037839 162 LSTPLAEVVP 171 (177)
Q Consensus 162 ~~~~~~~~~~ 171 (177)
..+...|..+
T Consensus 282 ~~~~~~e~tp 291 (348)
T KOG4628|consen 282 GSEPVSEDTP 291 (348)
T ss_pred CCCCccCCCc
Confidence 7777777554
No 2
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.65 E-value=3.1e-17 Score=96.73 Aligned_cols=43 Identities=42% Similarity=1.182 Sum_probs=40.3
Q ss_pred cCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCcCCC
Q 037839 111 CCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCR 154 (177)
Q Consensus 111 ~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR 154 (177)
+|+||+++|..++.+..++ |||+||.+||..|++++.+||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHhCCcCCccC
Confidence 6999999999999999999 999999999999999999999997
No 3
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.48 E-value=4.6e-14 Score=110.81 Aligned_cols=77 Identities=27% Similarity=0.638 Sum_probs=57.6
Q ss_pred CCCCHHHHhhCCCccchhhhhccCCCCcccCccccccccCCC----ceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCC
Q 037839 82 VGLDESTIKSYPKLPYSEARLQKKDSTATCCSICLADYRSSD----MLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSP 157 (177)
Q Consensus 82 ~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~C~ICl~~f~~~~----~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~ 157 (177)
.+..+..+..+|.+......... ...+.+|+||++.+..+. .+..++.|+|.||.+||..|+..+.+||+||.++
T Consensus 148 ~~~~~~~i~~lp~vl~~~e~~~~-~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~ 226 (238)
T PHA02929 148 GKNYKKFLKTIPSVLSEYEKLYN-RSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPF 226 (238)
T ss_pred cchhHHHHHhcchhhhhhhhhhc-CCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEe
Confidence 35677788888887655433222 234578999999987643 1334545999999999999999999999999987
Q ss_pred CC
Q 037839 158 LP 159 (177)
Q Consensus 158 ~~ 159 (177)
..
T Consensus 227 ~~ 228 (238)
T PHA02929 227 IS 228 (238)
T ss_pred eE
Confidence 64
No 4
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.44 E-value=6.2e-14 Score=91.33 Aligned_cols=46 Identities=35% Similarity=0.950 Sum_probs=36.1
Q ss_pred CcccCccccccccCC----------CceeecCCCCCcccHhhHHHHHhcCCCCcCCC
Q 037839 108 TATCCSICLADYRSS----------DMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCR 154 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~----------~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR 154 (177)
.++.|+||++.|..+ -.+...+ |||.||..||.+|++.+.+||+||
T Consensus 18 ~~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~-C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 18 ADDNCAICREPLEDPCPECQAPQDECPIVWGP-CGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CCSBETTTTSBTTSTTCCHHHCTTTS-EEEET-TSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred cCCcccccChhhhChhhhhcCCccccceEecc-cCCCEEHHHHHHHHhcCCcCCCCC
Confidence 345699999999432 2344455 999999999999999999999998
No 5
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=4.8e-13 Score=106.54 Aligned_cols=51 Identities=49% Similarity=1.114 Sum_probs=46.0
Q ss_pred CcccCccccccccCCCceeecCCCCCcccHhhHHHHHh-cCCCCcCCCCCCCC
Q 037839 108 TATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLR-LHPTCPVCRTSPLP 159 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~-~~~~CP~CR~~~~~ 159 (177)
.+-+|+||++.|..+|.++.+| |.|.||..|++.|+. -+..||+||.++-|
T Consensus 322 ~GveCaICms~fiK~d~~~vlP-C~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLP-CDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CCceEEEEhhhhcccceEEEec-cCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 4578999999999999999999 999999999999998 46689999998843
No 6
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=1.8e-12 Score=102.69 Aligned_cols=51 Identities=29% Similarity=0.804 Sum_probs=44.2
Q ss_pred CcccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCCCCCC
Q 037839 108 TATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPLPTPL 162 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~~~~~ 162 (177)
....|.+||+...++ ..+| |||+||+.||..|...+..||+||..+.|..+
T Consensus 238 a~~kC~LCLe~~~~p---SaTp-CGHiFCWsCI~~w~~ek~eCPlCR~~~~pskv 288 (293)
T KOG0317|consen 238 ATRKCSLCLENRSNP---SATP-CGHIFCWSCILEWCSEKAECPLCREKFQPSKV 288 (293)
T ss_pred CCCceEEEecCCCCC---CcCc-CcchHHHHHHHHHHccccCCCcccccCCCcce
Confidence 345799999997766 5667 99999999999999999999999999988653
No 7
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=1e-12 Score=107.23 Aligned_cols=55 Identities=31% Similarity=0.880 Sum_probs=44.6
Q ss_pred CCCcccCccccccccCCC----------ceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCCCCC
Q 037839 106 DSTATCCSICLADYRSSD----------MLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPLPTP 161 (177)
Q Consensus 106 ~~~~~~C~ICl~~f~~~~----------~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~~~~ 161 (177)
..++..|+||++++-.++ .-..+| |||++|-+|++.|++++++||+||.++..+.
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLp-CGHilHl~CLknW~ERqQTCPICr~p~ifd~ 348 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLP-CGHILHLHCLKNWLERQQTCPICRRPVIFDQ 348 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCccccc-ccceeeHHHHHHHHHhccCCCcccCcccccc
Confidence 345678999999953332 235788 9999999999999999999999999976543
No 8
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.26 E-value=4.3e-12 Score=96.13 Aligned_cols=57 Identities=30% Similarity=0.691 Sum_probs=44.7
Q ss_pred CcccCccccccccCCCceeecCCCCCcccHhhHHHHHhc----------------CCCCcCCCCCCCCCCCCCCccc
Q 037839 108 TATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRL----------------HPTCPVCRTSPLPTPLSTPLAE 168 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~----------------~~~CP~CR~~~~~~~~~~~~~~ 168 (177)
+..+|+||++.+.++ .+++ |||+||+.||..|+.. ...||+||+++....+.+.+.+
T Consensus 17 ~~~~CpICld~~~dP---VvT~-CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiygr 89 (193)
T PLN03208 17 GDFDCNICLDQVRDP---VVTL-CGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYGR 89 (193)
T ss_pred CccCCccCCCcCCCc---EEcC-CCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeecc
Confidence 457899999998766 4566 9999999999999852 2479999999987665555443
No 9
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=9.3e-12 Score=96.03 Aligned_cols=59 Identities=27% Similarity=0.611 Sum_probs=46.3
Q ss_pred CCCcccCccccccccCCCceeecCCCCCcccHhhHHHHHhc---CCCCcCCCCCCCCCCCCCCccc
Q 037839 106 DSTATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRL---HPTCPVCRTSPLPTPLSTPLAE 168 (177)
Q Consensus 106 ~~~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~---~~~CP~CR~~~~~~~~~~~~~~ 168 (177)
.....+|-|||+.-+++ | ++. |||+|||-||.+|+.. ++.||+||+.+..+.+-+.+..
T Consensus 44 ~~~~FdCNICLd~akdP--V-vTl-CGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYGr 105 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDP--V-VTL-CGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYGR 105 (230)
T ss_pred CCCceeeeeeccccCCC--E-Eee-cccceehHHHHHHHhhcCCCeeCCccccccccceEEeeecc
Confidence 34567899999996655 3 444 9999999999999965 4469999999988776555543
No 10
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=99.17 E-value=2.8e-11 Score=70.42 Aligned_cols=44 Identities=45% Similarity=1.152 Sum_probs=36.7
Q ss_pred cCccccccccCCCceeecCCCCCcccHhhHHHHHhc-CCCCcCCCCCC
Q 037839 111 CCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRL-HPTCPVCRTSP 157 (177)
Q Consensus 111 ~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~-~~~CP~CR~~~ 157 (177)
.|+||++.+ .+.+...+ |||.||..|+..|+.. +..||+||..+
T Consensus 1 ~C~iC~~~~--~~~~~~~~-C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEF--REPVVLLP-CGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhh--hCceEecC-CCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 499999998 34455665 9999999999999987 77899999864
No 11
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.16 E-value=1.9e-11 Score=73.79 Aligned_cols=45 Identities=38% Similarity=0.889 Sum_probs=38.0
Q ss_pred ccCccccccccCCCceeecCCCCCc-ccHhhHHHHHhcCCCCcCCCCCCC
Q 037839 110 TCCSICLADYRSSDMLRLLPDCSHL-FHVKCVDPWLRLHPTCPVCRTSPL 158 (177)
Q Consensus 110 ~~C~ICl~~f~~~~~v~~l~~C~H~-fH~~Ci~~Wl~~~~~CP~CR~~~~ 158 (177)
..|.||++... .+..+| |||. |+..|+..|++....||+||+++.
T Consensus 3 ~~C~iC~~~~~---~~~~~p-CgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 3 EECPICFENPR---DVVLLP-CGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp SB-TTTSSSBS---SEEEET-TCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred CCCccCCccCC---ceEEeC-CCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 46999999854 467888 9999 999999999999999999999874
No 12
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=99.15 E-value=2.2e-11 Score=69.69 Aligned_cols=39 Identities=41% Similarity=1.123 Sum_probs=32.7
Q ss_pred CccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCcCC
Q 037839 112 CSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVC 153 (177)
Q Consensus 112 C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~C 153 (177)
|+||++.+.+ .+..++ |||+||.+|+..|++.+..||+|
T Consensus 1 C~iC~~~~~~--~~~~~~-CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD--PVVVTP-CGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS--EEEECT-TSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccC--cCEECC-CCCchhHHHHHHHHHCcCCCcCC
Confidence 7899999776 455777 99999999999999998899998
No 13
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=99.12 E-value=4.6e-11 Score=78.94 Aligned_cols=52 Identities=31% Similarity=0.710 Sum_probs=39.2
Q ss_pred CcccCccccccccC--------CCc-eeecCCCCCcccHhhHHHHHhc---CCCCcCCCCCCCC
Q 037839 108 TATCCSICLADYRS--------SDM-LRLLPDCSHLFHVKCVDPWLRL---HPTCPVCRTSPLP 159 (177)
Q Consensus 108 ~~~~C~ICl~~f~~--------~~~-v~~l~~C~H~fH~~Ci~~Wl~~---~~~CP~CR~~~~~ 159 (177)
.++.|.||...|.. ++. -.++..|+|.||..||.+|+.+ +..||+||++...
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 36679999999962 232 2234459999999999999975 4689999998643
No 14
>PHA02926 zinc finger-like protein; Provisional
Probab=99.06 E-value=1.1e-10 Score=89.77 Aligned_cols=52 Identities=33% Similarity=0.792 Sum_probs=39.6
Q ss_pred CcccCccccccccCC-----CceeecCCCCCcccHhhHHHHHhcC------CCCcCCCCCCCC
Q 037839 108 TATCCSICLADYRSS-----DMLRLLPDCSHLFHVKCVDPWLRLH------PTCPVCRTSPLP 159 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~-----~~v~~l~~C~H~fH~~Ci~~Wl~~~------~~CP~CR~~~~~ 159 (177)
.+.+|+||+|..-.+ ..-.+|+.|+|.||..||..|...+ .+||+||..+..
T Consensus 169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~ 231 (242)
T PHA02926 169 KEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRN 231 (242)
T ss_pred CCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeee
Confidence 456799999986332 2234666799999999999998753 359999997753
No 15
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=99.02 E-value=2.8e-10 Score=66.83 Aligned_cols=44 Identities=34% Similarity=0.850 Sum_probs=37.3
Q ss_pred cCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCcCCCC
Q 037839 111 CCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRT 155 (177)
Q Consensus 111 ~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~ 155 (177)
.|.||++.|...+..++++ |||+|+..|+..+......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~-CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTS-CGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcc-cCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 4999999995556677777 9999999999998756678999985
No 16
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=99.00 E-value=1.7e-10 Score=74.50 Aligned_cols=51 Identities=27% Similarity=0.605 Sum_probs=39.2
Q ss_pred cccCcccccccc-----------CCC-ceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCCC
Q 037839 109 ATCCSICLADYR-----------SSD-MLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPLP 159 (177)
Q Consensus 109 ~~~C~ICl~~f~-----------~~~-~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~~ 159 (177)
.+.|+||...+. .++ .......|+|.||..||.+||.++..||++|++...
T Consensus 20 id~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~ 82 (88)
T COG5194 20 IDVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWVL 82 (88)
T ss_pred cchhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeEE
Confidence 456777777763 233 333444699999999999999999999999998753
No 17
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=1.7e-10 Score=101.32 Aligned_cols=54 Identities=37% Similarity=0.858 Sum_probs=46.1
Q ss_pred CcccCccccccccCCCc--eeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCCCCCC
Q 037839 108 TATCCSICLADYRSSDM--LRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPLPTPL 162 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~~--v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~~~~~ 162 (177)
....|+||+|++..+.. ...++ |+|+||..|+..|+++.++||.||..+...+.
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~-C~Hifh~~CL~~W~er~qtCP~CR~~~~~~~~ 345 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLP-CGHIFHDSCLRSWFERQQTCPTCRTVLYDYVL 345 (543)
T ss_pred cCCeeeeechhhccccccccceee-cccchHHHHHHHHHHHhCcCCcchhhhhcccc
Confidence 45679999999998655 66888 99999999999999999999999996655443
No 18
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.99 E-value=2.5e-10 Score=66.36 Aligned_cols=38 Identities=34% Similarity=0.892 Sum_probs=29.3
Q ss_pred CccccccccCCCceeecCCCCCcccHhhHHHHHhcC----CCCcCC
Q 037839 112 CSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLH----PTCPVC 153 (177)
Q Consensus 112 C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~----~~CP~C 153 (177)
|+||++.|.++ ..++ |||.|+..||..|++.. ..||.|
T Consensus 1 CpiC~~~~~~P---v~l~-CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDP---VSLP-CGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSE---EE-S-SSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCc---cccC-CcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999988 5676 99999999999999653 369987
No 19
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=5.4e-10 Score=83.05 Aligned_cols=53 Identities=25% Similarity=0.580 Sum_probs=42.9
Q ss_pred CcccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCCCCCC
Q 037839 108 TATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPLPTPL 162 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~~~~~ 162 (177)
....|+|||+.+.+... +..+|||+||..||..-++....||+||+.+.-+.+
T Consensus 130 ~~~~CPiCl~~~sek~~--vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k~~ 182 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEKVP--VSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHKQF 182 (187)
T ss_pred cccCCCceecchhhccc--cccccchhHHHHHHHHHHHhCCCCCCcccccchhhh
Confidence 34679999999986543 323599999999999999999999999987755543
No 20
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.94 E-value=4e-10 Score=64.99 Aligned_cols=39 Identities=41% Similarity=1.063 Sum_probs=33.1
Q ss_pred CccccccccCCCceeecCCCCCcccHhhHHHHHh--cCCCCcCC
Q 037839 112 CSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLR--LHPTCPVC 153 (177)
Q Consensus 112 C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~--~~~~CP~C 153 (177)
|+||++.+..+. ..++ |||.||..|+..|+. ....||+|
T Consensus 1 C~iC~~~~~~~~--~~~~-C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPV--ILLP-CGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEE--EETT-TSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCC--EEec-CCCcchHHHHHHHHHhcCCccCCcC
Confidence 789999987663 4676 999999999999998 45579988
No 21
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.90 E-value=2e-09 Score=67.73 Aligned_cols=48 Identities=23% Similarity=0.442 Sum_probs=41.2
Q ss_pred ccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCCCCC
Q 037839 110 TCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPLPTP 161 (177)
Q Consensus 110 ~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~~~~ 161 (177)
..|+||.+.+.++ ..++ |||+|+..||..|++++..||+|+.++....
T Consensus 2 ~~Cpi~~~~~~~P---v~~~-~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~ 49 (63)
T smart00504 2 FLCPISLEVMKDP---VILP-SGQTYERRAIEKWLLSHGTDPVTGQPLTHED 49 (63)
T ss_pred cCCcCCCCcCCCC---EECC-CCCEEeHHHHHHHHHHCCCCCCCcCCCChhh
Confidence 3599999999887 4567 9999999999999998889999999885433
No 22
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.89 E-value=1.7e-09 Score=60.63 Aligned_cols=38 Identities=42% Similarity=1.101 Sum_probs=31.9
Q ss_pred CccccccccCCCceeecCCCCCcccHhhHHHHHh-cCCCCcCC
Q 037839 112 CSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLR-LHPTCPVC 153 (177)
Q Consensus 112 C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~-~~~~CP~C 153 (177)
|+||++. ......++ |||.||..|+..|+. .+..||+|
T Consensus 1 C~iC~~~---~~~~~~~~-C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEE---LKDPVVLP-CGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccC---CCCcEEec-CCChHHHHHHHHHHHhCcCCCCCC
Confidence 7899988 34556777 999999999999998 56679987
No 23
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.79 E-value=4.7e-09 Score=88.21 Aligned_cols=50 Identities=32% Similarity=0.696 Sum_probs=42.7
Q ss_pred CcccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCCCCC
Q 037839 108 TATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPLPTP 161 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~~~~ 161 (177)
....|+||++.|..+ .+++ |||.||..||..|+.....||+||..+....
T Consensus 25 ~~l~C~IC~d~~~~P---vitp-CgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~~ 74 (397)
T TIGR00599 25 TSLRCHICKDFFDVP---VLTS-CSHTFCSLCIRRCLSNQPKCPLCRAEDQESK 74 (397)
T ss_pred cccCCCcCchhhhCc---cCCC-CCCchhHHHHHHHHhCCCCCCCCCCcccccc
Confidence 455799999999876 3566 9999999999999988888999999987643
No 24
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=3.1e-09 Score=83.53 Aligned_cols=51 Identities=29% Similarity=0.775 Sum_probs=41.6
Q ss_pred CcccCccccccccCCCceeecCCCCCcccHhhHHH-HHhcCCC-CcCCCCCCCCCCC
Q 037839 108 TATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDP-WLRLHPT-CPVCRTSPLPTPL 162 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~-Wl~~~~~-CP~CR~~~~~~~~ 162 (177)
....|+||++....+ ..++ |||+||+.||.. |-.++.. ||+||+.+.++..
T Consensus 214 ~d~kC~lC~e~~~~p---s~t~-CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~v 266 (271)
T COG5574 214 ADYKCFLCLEEPEVP---SCTP-CGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKKV 266 (271)
T ss_pred cccceeeeecccCCc---cccc-ccchhhHHHHHHHHHhhccccCchhhhhccchhh
Confidence 356799999996655 5666 999999999999 8766665 9999999988653
No 25
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=1.4e-09 Score=85.62 Aligned_cols=61 Identities=28% Similarity=0.574 Sum_probs=47.0
Q ss_pred hhhhhccCCCCcccCccccccccCCC-------ceeecCCCCCcccHhhHHHHH--hcCCCCcCCCCCCCC
Q 037839 98 SEARLQKKDSTATCCSICLADYRSSD-------MLRLLPDCSHLFHVKCVDPWL--RLHPTCPVCRTSPLP 159 (177)
Q Consensus 98 ~~~~~~~~~~~~~~C~ICl~~f~~~~-------~v~~l~~C~H~fH~~Ci~~Wl--~~~~~CP~CR~~~~~ 159 (177)
+......+..++..|+||-..+.... .+..|. |+|+||..||..|. -++++||.|+..+-.
T Consensus 213 s~~glPtkhl~d~vCaVCg~~~~~s~~eegvienty~Ls-CnHvFHEfCIrGWcivGKkqtCPYCKekVdl 282 (328)
T KOG1734|consen 213 SPSGLPTKHLSDSVCAVCGQQIDVSVDEEGVIENTYKLS-CNHVFHEFCIRGWCIVGKKQTCPYCKEKVDL 282 (328)
T ss_pred CCCCCCCCCCCcchhHhhcchheeecchhhhhhhheeee-cccchHHHhhhhheeecCCCCCchHHHHhhH
Confidence 33334445566778999988886544 677887 99999999999996 567899999987654
No 26
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=4.7e-09 Score=71.12 Aligned_cols=53 Identities=26% Similarity=0.589 Sum_probs=41.5
Q ss_pred CCCCcccCcccccccc-------------CCCceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCC
Q 037839 105 KDSTATCCSICLADYR-------------SSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSP 157 (177)
Q Consensus 105 ~~~~~~~C~ICl~~f~-------------~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~ 157 (177)
.....+.|+||..... .++.+.....|+|.||..||.+|++++..||+|.++-
T Consensus 42 WDi~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW 107 (114)
T KOG2930|consen 42 WDIVVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEW 107 (114)
T ss_pred eeeeechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcce
Confidence 3445667999987662 2345556667999999999999999999999998764
No 27
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=3.1e-09 Score=68.15 Aligned_cols=52 Identities=29% Similarity=0.719 Sum_probs=38.3
Q ss_pred CCcccCccccccccC--------CC-ceeecCCCCCcccHhhHHHHHhc---CCCCcCCCCCCC
Q 037839 107 STATCCSICLADYRS--------SD-MLRLLPDCSHLFHVKCVDPWLRL---HPTCPVCRTSPL 158 (177)
Q Consensus 107 ~~~~~C~ICl~~f~~--------~~-~v~~l~~C~H~fH~~Ci~~Wl~~---~~~CP~CR~~~~ 158 (177)
...+.|-||.-.|.. +| .-.++..|.|.||..||..|+.. +..||+||++..
T Consensus 18 ~~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 18 APDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred CCCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 344579999999852 33 22233359999999999999965 347999999764
No 28
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=5.7e-08 Score=82.73 Aligned_cols=52 Identities=25% Similarity=0.588 Sum_probs=40.7
Q ss_pred cccCccccccccCCCceeecCCCCCcccHhhHHHHHhcC-----CCCcCCCCCCCCCCCCC
Q 037839 109 ATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLH-----PTCPVCRTSPLPTPLST 164 (177)
Q Consensus 109 ~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~-----~~CP~CR~~~~~~~~~~ 164 (177)
...|+|||+...-+ ..+ .|||+||..||-.++... ..||+||..+.+.-+.+
T Consensus 186 ~~~CPICL~~~~~p---~~t-~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~p 242 (513)
T KOG2164|consen 186 DMQCPICLEPPSVP---VRT-NCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLP 242 (513)
T ss_pred CCcCCcccCCCCcc---ccc-ccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceee
Confidence 66799999996655 233 499999999999988543 47999999998755443
No 29
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=98.55 E-value=6.5e-08 Score=57.98 Aligned_cols=42 Identities=26% Similarity=0.775 Sum_probs=32.6
Q ss_pred cCccccccccCCCceeecCCCC-----CcccHhhHHHHHhcC--CCCcCCC
Q 037839 111 CCSICLADYRSSDMLRLLPDCS-----HLFHVKCVDPWLRLH--PTCPVCR 154 (177)
Q Consensus 111 ~C~ICl~~f~~~~~v~~l~~C~-----H~fH~~Ci~~Wl~~~--~~CP~CR 154 (177)
.|.||++ +..++.....| |. |.+|..|+..|+..+ .+||+|+
T Consensus 1 ~CrIC~~-~~~~~~~l~~P-C~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHD-EGDEGDPLVSP-CRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCC-CCCCCCeeEec-cccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 3899999 34445555788 75 899999999999654 4899995
No 30
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.55 E-value=5.2e-08 Score=56.71 Aligned_cols=38 Identities=29% Similarity=0.810 Sum_probs=22.1
Q ss_pred CccccccccCCC-ceeecCCCCCcccHhhHHHHHhcC----CCCc
Q 037839 112 CSICLADYRSSD-MLRLLPDCSHLFHVKCVDPWLRLH----PTCP 151 (177)
Q Consensus 112 C~ICl~~f~~~~-~v~~l~~C~H~fH~~Ci~~Wl~~~----~~CP 151 (177)
|+||.+ |..++ .-.+|+ |||+|+.+|+..|+.++ ..||
T Consensus 1 CpIc~e-~~~~~n~P~~L~-CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLP-CGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-S-SS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEe-CccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 86644 346788 99999999999999753 2576
No 31
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=2.5e-07 Score=78.47 Aligned_cols=50 Identities=34% Similarity=0.848 Sum_probs=37.9
Q ss_pred cccCccccccccC---CC-----------ceeecCCCCCcccHhhHHHHHhc-CCCCcCCCCCCCC
Q 037839 109 ATCCSICLADYRS---SD-----------MLRLLPDCSHLFHVKCVDPWLRL-HPTCPVCRTSPLP 159 (177)
Q Consensus 109 ~~~C~ICl~~f~~---~~-----------~v~~l~~C~H~fH~~Ci~~Wl~~-~~~CP~CR~~~~~ 159 (177)
..+|+||+..... +. .-...| |.|+||..|+..|+.. +-.||+||+++-+
T Consensus 571 t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tP-C~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 571 TNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTP-CHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred cccceEeccccceeeccCcchhhhhhhhccccccc-hHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 4579999988742 11 122446 9999999999999985 4489999998843
No 32
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=1.4e-07 Score=77.21 Aligned_cols=49 Identities=31% Similarity=0.683 Sum_probs=41.1
Q ss_pred CCcccCccccccccCCCceeecCCCCCc-ccHhhHHHHHhcCCCCcCCCCCCCC
Q 037839 107 STATCCSICLADYRSSDMLRLLPDCSHL-FHVKCVDPWLRLHPTCPVCRTSPLP 159 (177)
Q Consensus 107 ~~~~~C~ICl~~f~~~~~v~~l~~C~H~-fH~~Ci~~Wl~~~~~CP~CR~~~~~ 159 (177)
....+|+||+.+ ...+.+|| |.|. .|..|.+..--.+..||+||+++..
T Consensus 288 ~~gkeCVIClse---~rdt~vLP-CRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 288 ESGKECVICLSE---SRDTVVLP-CRHLCLCSGCAKSLRYQTNNCPICRQPIEE 337 (349)
T ss_pred cCCCeeEEEecC---CcceEEec-chhhehhHhHHHHHHHhhcCCCccccchHh
Confidence 346789999999 55668999 9999 8999999866567789999999854
No 33
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.41 E-value=9.2e-08 Score=77.77 Aligned_cols=48 Identities=29% Similarity=0.773 Sum_probs=42.5
Q ss_pred cccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCCCC
Q 037839 109 ATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPLPT 160 (177)
Q Consensus 109 ~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~~~ 160 (177)
-..|.||.+.|..+ .++| |+|.||..||..+|..+..||.|+.++...
T Consensus 23 lLRC~IC~eyf~ip---~itp-CsHtfCSlCIR~~L~~~p~CP~C~~~~~Es 70 (442)
T KOG0287|consen 23 LLRCGICFEYFNIP---MITP-CSHTFCSLCIRKFLSYKPQCPTCCVTVTES 70 (442)
T ss_pred HHHHhHHHHHhcCc---eecc-ccchHHHHHHHHHhccCCCCCceecccchh
Confidence 34699999999988 5666 999999999999999999999999988753
No 34
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.37 E-value=3.9e-07 Score=74.03 Aligned_cols=55 Identities=25% Similarity=0.551 Sum_probs=40.7
Q ss_pred cccCcccccc-ccCCCc-eeecCCCCCcccHhhHHHHHhc-CCCCcCCCCCCCCCCCCC
Q 037839 109 ATCCSICLAD-YRSSDM-LRLLPDCSHLFHVKCVDPWLRL-HPTCPVCRTSPLPTPLST 164 (177)
Q Consensus 109 ~~~C~ICl~~-f~~~~~-v~~l~~C~H~fH~~Ci~~Wl~~-~~~CP~CR~~~~~~~~~~ 164 (177)
+..|++|... +..++. +.+.+ |||.||..|++..+.. ...||.|+.++...++.+
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~-CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~ 60 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRV 60 (309)
T ss_pred CCCCCcCCCCCccCcccccccCC-CCCcccHHHHHHHhcCCCCCCCCCCCccchhhccc
Confidence 3569999996 445543 22334 9999999999996644 558999999998776543
No 35
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=98.34 E-value=7.5e-08 Score=62.07 Aligned_cols=49 Identities=24% Similarity=0.654 Sum_probs=23.7
Q ss_pred ccCccccccccCCC----ceeecCCCCCcccHhhHHHHHhc---CC--------CCcCCCCCCC
Q 037839 110 TCCSICLADYRSSD----MLRLLPDCSHLFHVKCVDPWLRL---HP--------TCPVCRTSPL 158 (177)
Q Consensus 110 ~~C~ICl~~f~~~~----~v~~l~~C~H~fH~~Ci~~Wl~~---~~--------~CP~CR~~~~ 158 (177)
.+|.||+..+..++ .+-.-+.|++.||..|+..||.. .+ .||.|++++.
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 46999999876332 22222259999999999999954 11 5999998874
No 36
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.31 E-value=3.2e-07 Score=73.29 Aligned_cols=47 Identities=32% Similarity=0.675 Sum_probs=40.7
Q ss_pred cccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCCC
Q 037839 109 ATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPLP 159 (177)
Q Consensus 109 ~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~~ 159 (177)
...|.||-+.|..+ ..++ |||-||..||...|..+..||+||.+...
T Consensus 25 ~lrC~IC~~~i~ip---~~Tt-CgHtFCslCIR~hL~~qp~CP~Cr~~~~e 71 (391)
T COG5432 25 MLRCRICDCRISIP---CETT-CGHTFCSLCIRRHLGTQPFCPVCREDPCE 71 (391)
T ss_pred HHHhhhhhheeecc---eecc-cccchhHHHHHHHhcCCCCCccccccHHh
Confidence 34699999999877 3455 99999999999999999999999998764
No 37
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=2.8e-07 Score=76.13 Aligned_cols=47 Identities=28% Similarity=0.823 Sum_probs=36.5
Q ss_pred cCccccccccCCCceeecCCCCCcccHhhHHHHHhc---CCCCcCCCCCC
Q 037839 111 CCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRL---HPTCPVCRTSP 157 (177)
Q Consensus 111 ~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~---~~~CP~CR~~~ 157 (177)
.|.||-+-+....++.-...|||+||..|+..|+.. +..||.||-.+
T Consensus 6 ~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~ 55 (465)
T KOG0827|consen 6 ECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKL 55 (465)
T ss_pred eeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecc
Confidence 699996666555566655569999999999999975 35799999443
No 38
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.26 E-value=4.5e-07 Score=58.92 Aligned_cols=50 Identities=22% Similarity=0.380 Sum_probs=38.3
Q ss_pred CcccCccccccccCCCceeecCCCCCcccHhhHHHHHhc-CCCCcCCCCCCCCCC
Q 037839 108 TATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRL-HPTCPVCRTSPLPTP 161 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~-~~~CP~CR~~~~~~~ 161 (177)
+...|+|+.+-|.++ ..++ +||.|...||..|+.+ +..||+|+.++....
T Consensus 3 ~~f~CpIt~~lM~dP---Vi~~-~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~ 53 (73)
T PF04564_consen 3 DEFLCPITGELMRDP---VILP-SGHTYERSAIERWLEQNGGTDPFTRQPLSESD 53 (73)
T ss_dssp GGGB-TTTSSB-SSE---EEET-TSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGG
T ss_pred cccCCcCcCcHhhCc---eeCC-cCCEEcHHHHHHHHHcCCCCCCCCCCcCCccc
Confidence 346799999999987 5677 9999999999999988 789999999887644
No 39
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=4.9e-07 Score=72.25 Aligned_cols=44 Identities=39% Similarity=0.834 Sum_probs=38.7
Q ss_pred CcccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCcCCCC
Q 037839 108 TATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRT 155 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~ 155 (177)
+...|+||++.|..+ ..++ |||.||..|+..++.....||.||.
T Consensus 12 ~~~~C~iC~~~~~~p---~~l~-C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 12 EELTCPICLEYFREP---VLLP-CGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred ccccChhhHHHhhcC---cccc-ccchHhHHHHHHhcCCCcCCcccCC
Confidence 456799999999998 6787 9999999999999885567999993
No 40
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.15 E-value=5.5e-07 Score=81.50 Aligned_cols=53 Identities=25% Similarity=0.620 Sum_probs=38.0
Q ss_pred CCCcccCccccccccC-CC--ceeecCCCCCcccHhhHHHHHhc--CCCCcCCCCCCC
Q 037839 106 DSTATCCSICLADYRS-SD--MLRLLPDCSHLFHVKCVDPWLRL--HPTCPVCRTSPL 158 (177)
Q Consensus 106 ~~~~~~C~ICl~~f~~-~~--~v~~l~~C~H~fH~~Ci~~Wl~~--~~~CP~CR~~~~ 158 (177)
....++|+||..-+.. +. .-...+.|.|-||..|+..|+++ +.+||+||..+.
T Consensus 1466 fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1466 FSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred cCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 3557889999887651 10 00122349999999999999986 457999998763
No 41
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=4.1e-07 Score=54.70 Aligned_cols=45 Identities=31% Similarity=0.678 Sum_probs=34.5
Q ss_pred ccCccccccccCCCceeecCCCCCc-ccHhhHHHHHh-cCCCCcCCCCCCC
Q 037839 110 TCCSICLADYRSSDMLRLLPDCSHL-FHVKCVDPWLR-LHPTCPVCRTSPL 158 (177)
Q Consensus 110 ~~C~ICl~~f~~~~~v~~l~~C~H~-fH~~Ci~~Wl~-~~~~CP~CR~~~~ 158 (177)
.+|.||+|.-.+. ++..|||. .|.+|-.+.++ .+-.||+||+++.
T Consensus 8 dECTICye~pvds----VlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 8 DECTICYEHPVDS----VLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred cceeeeccCcchH----HHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 5799999985443 34459999 79999766555 5779999999874
No 42
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=98.07 E-value=1.2e-06 Score=73.66 Aligned_cols=49 Identities=35% Similarity=0.851 Sum_probs=38.7
Q ss_pred CcccCccccccccCCC-ceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCCC
Q 037839 108 TATCCSICLADYRSSD-MLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPLP 159 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~-~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~~ 159 (177)
+...|+||||.+...- -++... |.|.||..|+..|.. .+||+||-...+
T Consensus 174 ELPTCpVCLERMD~s~~gi~t~~-c~Hsfh~~cl~~w~~--~scpvcR~~q~p 223 (493)
T KOG0804|consen 174 ELPTCPVCLERMDSSTTGILTIL-CNHSFHCSCLMKWWD--SSCPVCRYCQSP 223 (493)
T ss_pred cCCCcchhHhhcCccccceeeee-cccccchHHHhhccc--CcChhhhhhcCc
Confidence 3567999999987643 334455 999999999999965 589999987764
No 43
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.07 E-value=8.5e-07 Score=55.43 Aligned_cols=46 Identities=30% Similarity=0.755 Sum_probs=23.0
Q ss_pred ccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCCCC
Q 037839 110 TCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPLPT 160 (177)
Q Consensus 110 ~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~~~ 160 (177)
..|++|.+-+..+ | .+..|.|+|+..||..-+. ..||+|+.+....
T Consensus 8 LrCs~C~~~l~~p--v-~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw~q 53 (65)
T PF14835_consen 8 LRCSICFDILKEP--V-CLGGCEHIFCSSCIRDCIG--SECPVCHTPAWIQ 53 (65)
T ss_dssp TS-SSS-S--SS---B----SSS--B-TTTGGGGTT--TB-SSS--B-S-S
T ss_pred cCCcHHHHHhcCC--c-eeccCccHHHHHHhHHhcC--CCCCCcCChHHHH
Confidence 3599999998877 3 3345999999999988544 3599999887543
No 44
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=3e-06 Score=70.55 Aligned_cols=50 Identities=32% Similarity=0.852 Sum_probs=38.5
Q ss_pred CcccCccccccccCC-CceeecCCCCCcccHhhHHHHHhc--CCCCcCCCCCC
Q 037839 108 TATCCSICLADYRSS-DMLRLLPDCSHLFHVKCVDPWLRL--HPTCPVCRTSP 157 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~-~~v~~l~~C~H~fH~~Ci~~Wl~~--~~~CP~CR~~~ 157 (177)
....|+|||+++..+ +.....+.|||.|-.+||+.|+.+ ...||.|...-
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~ka 55 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKA 55 (463)
T ss_pred ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChh
Confidence 456799999999754 444444469999999999999953 34799997654
No 45
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=3.5e-06 Score=65.12 Aligned_cols=58 Identities=36% Similarity=0.746 Sum_probs=47.0
Q ss_pred cccCccccccccCCCceeecCCCCCcccHhhHHHHHhc--------CCCCcCCCCCCCCC-CCCCCccc
Q 037839 109 ATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRL--------HPTCPVCRTSPLPT-PLSTPLAE 168 (177)
Q Consensus 109 ~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~--------~~~CP~CR~~~~~~-~~~~~~~~ 168 (177)
...|..|--.+..+|.+|.. |-|+||++|++.|... ..+||.|..++++. ++..++++
T Consensus 50 ~pNC~LC~t~La~gdt~RLv--CyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~NlvsPva~ 116 (299)
T KOG3970|consen 50 NPNCRLCNTPLASGDTTRLV--CYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPINLVSPVAE 116 (299)
T ss_pred CCCCceeCCccccCcceeeh--hhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCccccchhHH
Confidence 45699999999999988754 9999999999999754 34899999999874 66566654
No 46
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.94 E-value=1.6e-06 Score=77.23 Aligned_cols=51 Identities=27% Similarity=0.436 Sum_probs=41.9
Q ss_pred cccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCCCC
Q 037839 109 ATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPLPT 160 (177)
Q Consensus 109 ~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~~~ 160 (177)
...|++|+..+..+......+ |+|.||..|+..|-+.-.+||+||..+.-.
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k~-c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~v 173 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEKH-TAHYFCEECVGSWSRCAQTCPVDRGEFGEV 173 (1134)
T ss_pred hhhhhHHHHHHHHHhhccccc-cccccHHHHhhhhhhhcccCchhhhhhhee
Confidence 345888888887665555565 999999999999999999999999987653
No 47
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=7.8e-06 Score=72.82 Aligned_cols=49 Identities=22% Similarity=0.591 Sum_probs=38.0
Q ss_pred cccCccccccccCCCceeecCCCCCcccHhhHHHHHh-cCCCCcCCCCCCCCCC
Q 037839 109 ATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLR-LHPTCPVCRTSPLPTP 161 (177)
Q Consensus 109 ~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~-~~~~CP~CR~~~~~~~ 161 (177)
-..|++|-..+++ +.+. .|||+||..|+..-+. +...||.|.+.+.+.-
T Consensus 643 ~LkCs~Cn~R~Kd---~vI~-kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganD 692 (698)
T KOG0978|consen 643 LLKCSVCNTRWKD---AVIT-KCGHVFCEECVQTRYETRQRKCPKCNAAFGAND 692 (698)
T ss_pred ceeCCCccCchhh---HHHH-hcchHHHHHHHHHHHHHhcCCCCCCCCCCCccc
Confidence 3469999966443 3344 4999999999999885 5678999999987654
No 48
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=97.76 E-value=6.1e-06 Score=66.30 Aligned_cols=52 Identities=31% Similarity=0.695 Sum_probs=43.2
Q ss_pred CCcccCccccccccCCCceeecCCCCCcccHhhHHHHHhc-----------------------CCCCcCCCCCCCC
Q 037839 107 STATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRL-----------------------HPTCPVCRTSPLP 159 (177)
Q Consensus 107 ~~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~-----------------------~~~CP~CR~~~~~ 159 (177)
.....|+|||..|..++....++ |-|.||..|+.+++.. ...||+||-.+..
T Consensus 113 ~p~gqCvICLygfa~~~~ft~T~-C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~ 187 (368)
T KOG4445|consen 113 HPNGQCVICLYGFASSPAFTVTA-CDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKI 187 (368)
T ss_pred CCCCceEEEEEeecCCCceeeeh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccc
Confidence 34567999999999999898998 9999999999887632 1269999998764
No 49
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=2e-05 Score=65.38 Aligned_cols=52 Identities=29% Similarity=0.832 Sum_probs=39.6
Q ss_pred CCcccCccccccccCCC----ceeecCCCCCcccHhhHHHHH--hc-----CCCCcCCCCCCC
Q 037839 107 STATCCSICLADYRSSD----MLRLLPDCSHLFHVKCVDPWL--RL-----HPTCPVCRTSPL 158 (177)
Q Consensus 107 ~~~~~C~ICl~~f~~~~----~v~~l~~C~H~fH~~Ci~~Wl--~~-----~~~CP~CR~~~~ 158 (177)
..+..|.||++...... .-..+|+|.|.||..||..|- .+ .+.||.||....
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 34678999999876543 123557799999999999997 33 468999998654
No 50
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.68 E-value=1.1e-05 Score=67.28 Aligned_cols=50 Identities=32% Similarity=0.767 Sum_probs=40.6
Q ss_pred CCCcccCccccccccCCCceeecCCCCCcccHhhHHHHHhc--CCCCcCCCCCCCC
Q 037839 106 DSTATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRL--HPTCPVCRTSPLP 159 (177)
Q Consensus 106 ~~~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~--~~~CP~CR~~~~~ 159 (177)
+.....|.||-|. +..|.+-| |||+.|..|+..|-.. .+.||.||..+-.
T Consensus 366 gsTFeLCKICaen---dKdvkIEP-CGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKG 417 (563)
T KOG1785|consen 366 GSTFELCKICAEN---DKDVKIEP-CGHLLCTSCLAAWQDSDEGQTCPFCRCEIKG 417 (563)
T ss_pred cchHHHHHHhhcc---CCCccccc-ccchHHHHHHHhhcccCCCCCCCceeeEecc
Confidence 3445679999887 56788888 9999999999999743 5789999997654
No 51
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=2.9e-05 Score=62.51 Aligned_cols=49 Identities=29% Similarity=0.442 Sum_probs=38.9
Q ss_pred cccCccccccccCCCceeecCCCCCcccHhhHHHHHhc-CCCCcCCCCCCCCCC
Q 037839 109 ATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRL-HPTCPVCRTSPLPTP 161 (177)
Q Consensus 109 ~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~-~~~CP~CR~~~~~~~ 161 (177)
..+|+||+....-+ ..++ |+|.||..||+.=... +..|++||.++-++=
T Consensus 7 ~~eC~IC~nt~n~P---v~l~-C~HkFCyiCiKGsy~ndk~~CavCR~pids~i 56 (324)
T KOG0824|consen 7 KKECLICYNTGNCP---VNLY-CFHKFCYICIKGSYKNDKKTCAVCRFPIDSTI 56 (324)
T ss_pred CCcceeeeccCCcC---cccc-ccchhhhhhhcchhhcCCCCCceecCCCCcch
Confidence 34799999996655 5666 9999999999876654 456999999997653
No 52
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=8.2e-06 Score=66.89 Aligned_cols=49 Identities=29% Similarity=0.651 Sum_probs=39.1
Q ss_pred CcccCccccccccCCCceeecCCCCCcccHhhHHHHHhc-CCCCcCCCCCCCC
Q 037839 108 TATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRL-HPTCPVCRTSPLP 159 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~-~~~CP~CR~~~~~ 159 (177)
.+..|+|||+-++.. +..+.|.|-||.+||..-++. ++.||.||+.+.+
T Consensus 42 ~~v~c~icl~llk~t---mttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~S 91 (381)
T KOG0311|consen 42 IQVICPICLSLLKKT---MTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVS 91 (381)
T ss_pred hhhccHHHHHHHHhh---cccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccc
Confidence 355699999998765 344469999999999887754 6789999997765
No 53
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.39 E-value=7e-05 Score=46.20 Aligned_cols=41 Identities=22% Similarity=0.587 Sum_probs=27.7
Q ss_pred cccCccccccccCCCceeecCCCCCcccHhhHHHHHhc--CCCCcC
Q 037839 109 ATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRL--HPTCPV 152 (177)
Q Consensus 109 ~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~--~~~CP~ 152 (177)
...|+|.+..|++| |+-.. |||+|-.+.|..|+++ ...||+
T Consensus 11 ~~~CPiT~~~~~~P--V~s~~-C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 11 SLKCPITLQPFEDP--VKSKK-CGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp -SB-TTTSSB-SSE--EEESS-S--EEEHHHHHHHCTTTS-EE-SC
T ss_pred ccCCCCcCChhhCC--cCcCC-CCCeecHHHHHHHHHhcCCCCCCC
Confidence 45699999999876 55555 9999999999999944 446998
No 54
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=97.34 E-value=0.00019 Score=64.80 Aligned_cols=53 Identities=25% Similarity=0.657 Sum_probs=42.0
Q ss_pred CCCcccCccccccccCCCceeecCCCCCcccHhhHHHHHhc-------CCCCcCCCCCCC
Q 037839 106 DSTATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRL-------HPTCPVCRTSPL 158 (177)
Q Consensus 106 ~~~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~-------~~~CP~CR~~~~ 158 (177)
...-.+|.||.+.+.....+.--..|-|+||..||..|.++ ...||.|+....
T Consensus 188 ~~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~~ 247 (950)
T KOG1952|consen 188 SNRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVSK 247 (950)
T ss_pred hcCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchhc
Confidence 34456899999999888777765568899999999999864 237999985443
No 55
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=97.34 E-value=0.00013 Score=69.15 Aligned_cols=53 Identities=28% Similarity=0.637 Sum_probs=42.2
Q ss_pred CCCcccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCC----------CCcCCCCCCCC
Q 037839 106 DSTATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHP----------TCPVCRTSPLP 159 (177)
Q Consensus 106 ~~~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~----------~CP~CR~~~~~ 159 (177)
...++.|.||+-+-......+.|. |+|+||..|-.+-+.+.. +||+|+.++.-
T Consensus 3483 QD~DDmCmICFTE~L~AAP~IqL~-C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3483 QDADDMCMICFTEALSAAPAIQLD-CSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred cccCceEEEEehhhhCCCcceecC-CccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence 345677999998877777777887 999999999977665532 79999998754
No 56
>PHA02862 5L protein; Provisional
Probab=97.21 E-value=0.00016 Score=52.32 Aligned_cols=54 Identities=20% Similarity=0.503 Sum_probs=39.8
Q ss_pred ccCccccccccCCCceeecCCCC-----CcccHhhHHHHHhc--CCCCcCCCCCCCCCCCCCCccc
Q 037839 110 TCCSICLADYRSSDMLRLLPDCS-----HLFHVKCVDPWLRL--HPTCPVCRTSPLPTPLSTPLAE 168 (177)
Q Consensus 110 ~~C~ICl~~f~~~~~v~~l~~C~-----H~fH~~Ci~~Wl~~--~~~CP~CR~~~~~~~~~~~~~~ 168 (177)
..|-||+++-.+. .-| |. ..-|.+|+.+|+.. +..||+|+.++..++...++.+
T Consensus 3 diCWIC~~~~~e~----~~P-C~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik~~yKpf~k 63 (156)
T PHA02862 3 DICWICNDVCDER----NNF-CGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIKKTYVSFKK 63 (156)
T ss_pred CEEEEecCcCCCC----ccc-ccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEEEccccHHH
Confidence 4699999984322 345 54 56799999999965 4479999999988776655543
No 57
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.00019 Score=60.68 Aligned_cols=50 Identities=26% Similarity=0.668 Sum_probs=42.5
Q ss_pred CCcccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCCCC
Q 037839 107 STATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPLPT 160 (177)
Q Consensus 107 ~~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~~~ 160 (177)
..+.+|.||..-+..+ ..+| |||.||..|+++-+.....||.||..+...
T Consensus 82 ~sef~c~vc~~~l~~p---v~tp-cghs~c~~Cl~r~ld~~~~cp~Cr~~l~e~ 131 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPP---VVTP-CGHSFCLECLDRSLDQETECPLCRDELVEL 131 (398)
T ss_pred cchhhhhhhHhhcCCC---cccc-ccccccHHHHHHHhccCCCCcccccccccc
Confidence 4577899999998877 4567 999999999999777778899999998753
No 58
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.10 E-value=0.00033 Score=59.45 Aligned_cols=52 Identities=29% Similarity=0.574 Sum_probs=42.5
Q ss_pred CcccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCCCCCC
Q 037839 108 TATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPLPTPL 162 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~~~~~ 162 (177)
....|++|...+.++-.. .. |||.||..|+..|+..+..||.|+..+.....
T Consensus 20 ~~l~C~~C~~vl~~p~~~--~~-cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~ 71 (391)
T KOG0297|consen 20 ENLLCPICMSVLRDPVQT--TT-CGHRFCAGCLLESLSNHQKCPVCRQELTQAEE 71 (391)
T ss_pred ccccCccccccccCCCCC--CC-CCCcccccccchhhccCcCCcccccccchhhc
Confidence 345799999998887332 34 99999999999999999999999988765443
No 59
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.05 E-value=0.00026 Score=59.05 Aligned_cols=46 Identities=35% Similarity=0.878 Sum_probs=37.7
Q ss_pred cccCccccccccC-CCceeecCCCCCcccHhhHHHHHhc--CCCCcCCCC
Q 037839 109 ATCCSICLADYRS-SDMLRLLPDCSHLFHVKCVDPWLRL--HPTCPVCRT 155 (177)
Q Consensus 109 ~~~C~ICl~~f~~-~~~v~~l~~C~H~fH~~Ci~~Wl~~--~~~CP~CR~ 155 (177)
+..|-.|=+.+.. ++.+.-|| |.|+||..|+...+.+ .++||-||+
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALp-CsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALP-CSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred hhhhhhhhhhhcCCcccccccc-hhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 5569999888864 44677888 9999999999999865 458999993
No 60
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.00022 Score=52.61 Aligned_cols=29 Identities=34% Similarity=0.783 Sum_probs=26.5
Q ss_pred CcccCccccccccCCCceeecCCCCCcccH
Q 037839 108 TATCCSICLADYRSSDMLRLLPDCSHLFHV 137 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~ 137 (177)
+..+|+||||++..++.+..|| |--+||+
T Consensus 176 dkGECvICLEdL~~GdtIARLP-CLCIYHK 204 (205)
T KOG0801|consen 176 DKGECVICLEDLEAGDTIARLP-CLCIYHK 204 (205)
T ss_pred cCCcEEEEhhhccCCCceeccc-eEEEeec
Confidence 4567999999999999999999 9999996
No 61
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.00036 Score=58.49 Aligned_cols=48 Identities=25% Similarity=0.721 Sum_probs=38.8
Q ss_pred CcccCccccccccCCCceeecCCCCCcccHhhHHHHHhcC--------CCCcCCCCC
Q 037839 108 TATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLH--------PTCPVCRTS 156 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~--------~~CP~CR~~ 156 (177)
.-..|.||+++.........+| |+|+||..|+..++... -.||-+...
T Consensus 183 slf~C~ICf~e~~G~~c~~~lp-C~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~ 238 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLP-CSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCG 238 (445)
T ss_pred hcccceeeehhhcCcceeeecc-cchHHHHHHHHHHHHHhhhcceeeeecCCCCCCc
Confidence 4557999999998888899999 99999999999998431 258776543
No 62
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=96.92 E-value=0.00077 Score=49.68 Aligned_cols=55 Identities=20% Similarity=0.595 Sum_probs=37.9
Q ss_pred CcccCccccccccCCCceeecC-CCCC---cccHhhHHHHHhcC--CCCcCCCCCCCCCCCCCCc
Q 037839 108 TATCCSICLADYRSSDMLRLLP-DCSH---LFHVKCVDPWLRLH--PTCPVCRTSPLPTPLSTPL 166 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~~v~~l~-~C~H---~fH~~Ci~~Wl~~~--~~CP~CR~~~~~~~~~~~~ 166 (177)
.+..|-||.++-. +. ..| .|.. ..|.+|+..|+..+ ..|++|++++.......++
T Consensus 7 ~~~~CRIC~~~~~--~~--~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~~~~kpl 67 (162)
T PHA02825 7 MDKCCWICKDEYD--VV--TNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIKKNYKKC 67 (162)
T ss_pred CCCeeEecCCCCC--Cc--cCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEEEecCCC
Confidence 4567999998843 22 245 2333 46999999999654 4799999988765444333
No 63
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=96.91 E-value=0.00047 Score=49.55 Aligned_cols=39 Identities=21% Similarity=0.505 Sum_probs=30.5
Q ss_pred CcccCccccccccCCCceeecCCCC------CcccHhhHHHHHhcC
Q 037839 108 TATCCSICLADYRSSDMLRLLPDCS------HLFHVKCVDPWLRLH 147 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~~v~~l~~C~------H~fH~~Ci~~Wl~~~ 147 (177)
...+|+||++.....+-|..++ || |.||.+|+.+|-+.+
T Consensus 25 ~~~EC~IC~~~I~~~~GvV~vt-~~g~lnLEkmfc~~C~~rw~~~~ 69 (134)
T PF05883_consen 25 CTVECQICFDRIDNNDGVVYVT-DGGTLNLEKMFCADCDKRWRRER 69 (134)
T ss_pred cCeeehhhhhhhhcCCCEEEEe-cCCeehHHHHHHHHHHHHHHhhc
Confidence 4568999999998855566666 65 899999999994433
No 64
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.00051 Score=56.72 Aligned_cols=47 Identities=30% Similarity=0.695 Sum_probs=33.4
Q ss_pred CCCCcccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCC
Q 037839 105 KDSTATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPL 158 (177)
Q Consensus 105 ~~~~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~ 158 (177)
.......|+||+++..+ ...+| |||.-+ |..- -+...+||+||+.+.
T Consensus 301 ~~~~p~lcVVcl~e~~~---~~fvp-cGh~cc--ct~c-s~~l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 301 ELPQPDLCVVCLDEPKS---AVFVP-CGHVCC--CTLC-SKHLPQCPVCRQRIR 347 (355)
T ss_pred ccCCCCceEEecCCccc---eeeec-CCcEEE--chHH-HhhCCCCchhHHHHH
Confidence 33456679999999554 56888 999965 5533 233456999998764
No 65
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.0012 Score=54.46 Aligned_cols=51 Identities=29% Similarity=0.541 Sum_probs=42.3
Q ss_pred CCCCcccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCCC
Q 037839 105 KDSTATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPLP 159 (177)
Q Consensus 105 ~~~~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~~ 159 (177)
...++..|+||... +-.....| |+|.-|++||.+-+.+.+.|=.|++.+..
T Consensus 418 p~sEd~lCpICyA~---pi~Avf~P-C~H~SC~~CI~qHlmN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 418 PDSEDNLCPICYAG---PINAVFAP-CSHRSCYGCITQHLMNCKRCFFCKTTVID 468 (489)
T ss_pred CCcccccCcceecc---cchhhccC-CCCchHHHHHHHHHhcCCeeeEecceeee
Confidence 33556789999876 44445777 99999999999999999999999998864
No 66
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=96.83 E-value=0.00072 Score=39.97 Aligned_cols=40 Identities=30% Similarity=0.931 Sum_probs=26.4
Q ss_pred CccccccccCCCceeecCCCC-----CcccHhhHHHHHhc--CCCCcCC
Q 037839 112 CSICLADYRSSDMLRLLPDCS-----HLFHVKCVDPWLRL--HPTCPVC 153 (177)
Q Consensus 112 C~ICl~~f~~~~~v~~l~~C~-----H~fH~~Ci~~Wl~~--~~~CP~C 153 (177)
|-||++.-...+. ...| |+ ...|.+|+..|+.. +.+|++|
T Consensus 1 CrIC~~~~~~~~~-li~p-C~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEP-LISP-CRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-S-SS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCc-eecc-cccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 6799998766553 3455 64 35799999999964 4579887
No 67
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=96.81 E-value=0.00058 Score=52.10 Aligned_cols=45 Identities=29% Similarity=0.586 Sum_probs=38.1
Q ss_pred cccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCC
Q 037839 109 ATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSP 157 (177)
Q Consensus 109 ~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~ 157 (177)
...|.||-++|+.+ .+.. |||.||..|...-++....|-+|-+..
T Consensus 196 PF~C~iCKkdy~sp---vvt~-CGH~FC~~Cai~~y~kg~~C~~Cgk~t 240 (259)
T COG5152 196 PFLCGICKKDYESP---VVTE-CGHSFCSLCAIRKYQKGDECGVCGKAT 240 (259)
T ss_pred ceeehhchhhccch---hhhh-cchhHHHHHHHHHhccCCcceecchhh
Confidence 55799999999987 3444 999999999988888888999997654
No 68
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.0023 Score=52.35 Aligned_cols=48 Identities=19% Similarity=0.450 Sum_probs=37.4
Q ss_pred CCCcccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCcCCCCC
Q 037839 106 DSTATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTS 156 (177)
Q Consensus 106 ~~~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~ 156 (177)
..+...|++|+..-.++-.+- .-|-+||..|+..++.++..||+=-.+
T Consensus 297 ~~~~~~CpvClk~r~Nptvl~---vSGyVfCY~Ci~~Yv~~~~~CPVT~~p 344 (357)
T KOG0826|consen 297 PPDREVCPVCLKKRQNPTVLE---VSGYVFCYPCIFSYVVNYGHCPVTGYP 344 (357)
T ss_pred CCccccChhHHhccCCCceEE---ecceEEeHHHHHHHHHhcCCCCccCCc
Confidence 345667999999988763332 269999999999999999999984433
No 69
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=96.75 E-value=0.00096 Score=39.48 Aligned_cols=45 Identities=24% Similarity=0.609 Sum_probs=21.8
Q ss_pred CccccccccCCCceeecC-CCCCcccHhhHHHHHh-cCCCCcCCCCCC
Q 037839 112 CSICLADYRSSDMLRLLP-DCSHLFHVKCVDPWLR-LHPTCPVCRTSP 157 (177)
Q Consensus 112 C~ICl~~f~~~~~v~~l~-~C~H~fH~~Ci~~Wl~-~~~~CP~CR~~~ 157 (177)
|++|.+++...+. ...| .||+.++..|...-+. ....||-||.+.
T Consensus 1 cp~C~e~~d~~d~-~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDK-DFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCT-T--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCC-ccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 7889999844332 3444 4889999999988665 366899999875
No 70
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=96.65 E-value=0.00073 Score=46.49 Aligned_cols=32 Identities=28% Similarity=0.800 Sum_probs=26.3
Q ss_pred CcccCccccccccCCCceeecCCCCCcccHhhHH
Q 037839 108 TATCCSICLADYRSSDMLRLLPDCSHLFHVKCVD 141 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~ 141 (177)
+...|++|-..+.. ......| |||+||..|+.
T Consensus 77 ~~~~C~vC~k~l~~-~~f~~~p-~~~v~H~~C~~ 108 (109)
T PF10367_consen 77 ESTKCSVCGKPLGN-SVFVVFP-CGHVVHYSCIK 108 (109)
T ss_pred CCCCccCcCCcCCC-ceEEEeC-CCeEEeccccc
Confidence 45679999999987 4556777 99999999985
No 71
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.59 E-value=0.0023 Score=51.17 Aligned_cols=53 Identities=21% Similarity=0.456 Sum_probs=39.1
Q ss_pred CCCcccCccccccccCCCceeecCCCCCcccHhhHHHHHhc--CCCCcCCCCCCCCCC
Q 037839 106 DSTATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRL--HPTCPVCRTSPLPTP 161 (177)
Q Consensus 106 ~~~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~--~~~CP~CR~~~~~~~ 161 (177)
.....+|++|-+.-..| ....+ |||+||.-||..=+.. ...||.|-.++.+.+
T Consensus 236 ~t~~~~C~~Cg~~PtiP--~~~~~-C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~~lq 290 (298)
T KOG2879|consen 236 GTSDTECPVCGEPPTIP--HVIGK-CGHIYCYYCIATSRLWDASFTCPLCGENVEPLQ 290 (298)
T ss_pred ccCCceeeccCCCCCCC--eeecc-ccceeehhhhhhhhcchhhcccCccCCCCcchh
Confidence 34577899998885555 23444 9999999999775543 468999988887543
No 72
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.53 E-value=0.00041 Score=55.81 Aligned_cols=41 Identities=29% Similarity=0.709 Sum_probs=33.4
Q ss_pred cccCccccccccCCCceeecCCCCCc-ccHhhHHHHHhcCCCCcCCCCCC
Q 037839 109 ATCCSICLADYRSSDMLRLLPDCSHL-FHVKCVDPWLRLHPTCPVCRTSP 157 (177)
Q Consensus 109 ~~~C~ICl~~f~~~~~v~~l~~C~H~-fH~~Ci~~Wl~~~~~CP~CR~~~ 157 (177)
...|+||++. +.++..|+ |||. -|..|-... +.||+||+-+
T Consensus 300 ~~LC~ICmDa---P~DCvfLe-CGHmVtCt~CGkrm----~eCPICRqyi 341 (350)
T KOG4275|consen 300 RRLCAICMDA---PRDCVFLE-CGHMVTCTKCGKRM----NECPICRQYI 341 (350)
T ss_pred HHHHHHHhcC---CcceEEee-cCcEEeehhhcccc----ccCchHHHHH
Confidence 4569999988 77788998 9998 588888653 4899999855
No 73
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.51 E-value=5.9e-05 Score=62.66 Aligned_cols=52 Identities=25% Similarity=0.565 Sum_probs=44.4
Q ss_pred CCcccCccccccccCC-CceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCCC
Q 037839 107 STATCCSICLADYRSS-DMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPLP 159 (177)
Q Consensus 107 ~~~~~C~ICl~~f~~~-~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~~ 159 (177)
.....|+||.+.++.. +.+..+. |||++|.+|+..|+.+...||.|++.+--
T Consensus 194 slv~sl~I~~~slK~~y~k~~~~~-~g~~~~~~kL~k~L~~~~kl~~~~rel~~ 246 (465)
T KOG0827|consen 194 SLVGSLSICFESLKQNYDKISAIV-CGHIYHHGKLSKWLATKRKLPSCRRELPK 246 (465)
T ss_pred HHHhhhHhhHHHHHHHHHHHHHHh-hcccchhhHHHHHHHHHHHhHHHHhhhhh
Confidence 4466799999999876 6666776 99999999999999988899999997743
No 74
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.49 E-value=0.0013 Score=57.01 Aligned_cols=58 Identities=26% Similarity=0.525 Sum_probs=41.9
Q ss_pred CCCcccCccccccccCCCceeecCCCCCcccHhhHHHHHhc-----CCCCcCCCCCCCCCCCCCCccc
Q 037839 106 DSTATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRL-----HPTCPVCRTSPLPTPLSTPLAE 168 (177)
Q Consensus 106 ~~~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~-----~~~CP~CR~~~~~~~~~~~~~~ 168 (177)
+....+|-+|-+.-++. .... |.|.||..|+..++.. +-+||.|...+..+ ++.+.++
T Consensus 533 nk~~~~C~lc~d~aed~---i~s~-ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD-lse~ale 595 (791)
T KOG1002|consen 533 NKGEVECGLCHDPAEDY---IESS-CHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID-LSEPALE 595 (791)
T ss_pred ccCceeecccCChhhhh---Hhhh-hhHHHHHHHHHHHHHhhhcccCCCCcccccccccc-ccchhhh
Confidence 34567899999985543 3555 9999999999888743 34799998887655 4444444
No 75
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.41 E-value=0.0034 Score=49.49 Aligned_cols=52 Identities=15% Similarity=0.256 Sum_probs=45.4
Q ss_pred ccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCCCCC
Q 037839 110 TCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPLPTP 161 (177)
Q Consensus 110 ~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~~~~ 161 (177)
..|+||.+.+.+.-.+..|..|||+|+.+|.+..+..-..||+|-.++....
T Consensus 222 yiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrd 273 (303)
T KOG3039|consen 222 YICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRD 273 (303)
T ss_pred eecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccc
Confidence 4599999999988877777779999999999999998999999988876543
No 76
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.26 E-value=0.0017 Score=52.32 Aligned_cols=47 Identities=21% Similarity=0.391 Sum_probs=39.7
Q ss_pred cccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCCC
Q 037839 109 ATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPLP 159 (177)
Q Consensus 109 ~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~~ 159 (177)
...|-||...|..+ ++.. |+|.||..|...=+++...|++|.+....
T Consensus 241 Pf~c~icr~~f~~p---Vvt~-c~h~fc~~ca~~~~qk~~~c~vC~~~t~g 287 (313)
T KOG1813|consen 241 PFKCFICRKYFYRP---VVTK-CGHYFCEVCALKPYQKGEKCYVCSQQTHG 287 (313)
T ss_pred Cccccccccccccc---hhhc-CCceeehhhhccccccCCcceeccccccc
Confidence 45699999999987 3444 99999999998888888999999887653
No 77
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.14 E-value=0.0027 Score=49.89 Aligned_cols=47 Identities=26% Similarity=0.545 Sum_probs=34.2
Q ss_pred cCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCCCCC
Q 037839 111 CCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPLPTP 161 (177)
Q Consensus 111 ~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~~~~ 161 (177)
.|--|...-. ++...++. |+|+||..|...- ....||+||.++-...
T Consensus 5 hCn~C~~~~~-~~~f~LTa-C~HvfC~~C~k~~--~~~~C~lCkk~ir~i~ 51 (233)
T KOG4739|consen 5 HCNKCFRFPS-QDPFFLTA-CRHVFCEPCLKAS--SPDVCPLCKKSIRIIQ 51 (233)
T ss_pred EeccccccCC-CCceeeee-chhhhhhhhcccC--Cccccccccceeeeee
Confidence 3666665544 67777776 9999999998652 2238999999976544
No 78
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.08 E-value=0.005 Score=46.31 Aligned_cols=30 Identities=33% Similarity=0.839 Sum_probs=24.3
Q ss_pred CCCCcccHhhHHHHHhc----CC-------CCcCCCCCCCC
Q 037839 130 DCSHLFHVKCVDPWLRL----HP-------TCPVCRTSPLP 159 (177)
Q Consensus 130 ~C~H~fH~~Ci~~Wl~~----~~-------~CP~CR~~~~~ 159 (177)
.||.-||.-|+..|++. .+ .||+|..++..
T Consensus 189 qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pial 229 (234)
T KOG3268|consen 189 QCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIAL 229 (234)
T ss_pred ccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCccee
Confidence 49999999999999964 11 69999888753
No 79
>PHA03096 p28-like protein; Provisional
Probab=96.06 E-value=0.0035 Score=50.90 Aligned_cols=46 Identities=26% Similarity=0.645 Sum_probs=33.1
Q ss_pred ccCccccccccCC----CceeecCCCCCcccHhhHHHHHhcC---CCCcCCCC
Q 037839 110 TCCSICLADYRSS----DMLRLLPDCSHLFHVKCVDPWLRLH---PTCPVCRT 155 (177)
Q Consensus 110 ~~C~ICl~~f~~~----~~v~~l~~C~H~fH~~Ci~~Wl~~~---~~CP~CR~ 155 (177)
..|.||++..... ..-..|+.|.|.||..|+..|-... ..||.||.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 5699999987642 2344677899999999999997542 34544443
No 80
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=95.88 E-value=0.002 Score=52.63 Aligned_cols=51 Identities=22% Similarity=0.505 Sum_probs=41.4
Q ss_pred CcccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCCCCC
Q 037839 108 TATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPLPTP 161 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~~~~ 161 (177)
..-.|.+|-..|.+...+ . .|-|-||..||...+.....||.|...+....
T Consensus 14 ~~itC~LC~GYliDATTI--~-eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t~ 64 (331)
T KOG2660|consen 14 PHITCRLCGGYLIDATTI--T-ECLHTFCKSCIVKYLEESKYCPTCDIVIHKTH 64 (331)
T ss_pred cceehhhccceeecchhH--H-HHHHHHHHHHHHHHHHHhccCCccceeccCcc
Confidence 455799998888765333 2 49999999999999999999999998876653
No 81
>PF04641 Rtf2: Rtf2 RING-finger
Probab=95.73 E-value=0.013 Score=47.00 Aligned_cols=52 Identities=19% Similarity=0.480 Sum_probs=40.6
Q ss_pred CCcccCccccccccCCC-ceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCCCC
Q 037839 107 STATCCSICLADYRSSD-MLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPLPT 160 (177)
Q Consensus 107 ~~~~~C~ICl~~f~~~~-~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~~~ 160 (177)
.....|+|...+|.... -+.+.+ |||+|...++..- .....||+|-.++...
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~-cG~V~s~~alke~-k~~~~Cp~c~~~f~~~ 163 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRP-CGCVFSEKALKEL-KKSKKCPVCGKPFTEE 163 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcC-CCCEeeHHHHHhh-cccccccccCCccccC
Confidence 45678999999995544 455556 9999999999985 4456899999988754
No 82
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=95.72 E-value=0.0078 Score=36.52 Aligned_cols=45 Identities=27% Similarity=0.428 Sum_probs=32.2
Q ss_pred cCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCCCCC
Q 037839 111 CCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPLPTP 161 (177)
Q Consensus 111 ~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~~~~ 161 (177)
.|..|... +..-.++| |||+.+..|...+ +-+-||.|-+++....
T Consensus 9 ~~~~~~~~---~~~~~~~p-CgH~I~~~~f~~~--rYngCPfC~~~~~~~~ 53 (55)
T PF14447_consen 9 PCVFCGFV---GTKGTVLP-CGHLICDNCFPGE--RYNGCPFCGTPFEFDD 53 (55)
T ss_pred eEEEcccc---cccccccc-ccceeeccccChh--hccCCCCCCCcccCCC
Confidence 35555554 33345777 9999999998774 4457999999887643
No 83
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=95.61 E-value=0.0085 Score=48.35 Aligned_cols=46 Identities=28% Similarity=0.582 Sum_probs=38.2
Q ss_pred cccCccccccccCCC-ceeecCCCCCcccHhhHHHHHhcCCCCcCCCC
Q 037839 109 ATCCSICLADYRSSD-MLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRT 155 (177)
Q Consensus 109 ~~~C~ICl~~f~~~~-~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~ 155 (177)
...|+||.+.+-... .+..++ |||.-|..|+......+..||+|.+
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~-CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLK-CGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccC-cccchHHHHHHHHhccCCCCCcccc
Confidence 445999999886554 445676 9999999999999887899999988
No 84
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.50 E-value=0.01 Score=48.17 Aligned_cols=53 Identities=26% Similarity=0.528 Sum_probs=39.4
Q ss_pred ccCccccccccCCCceeecCCCCCcccHhhHHHHH-hcCCCCcCCCC-CCCCCCCCCC
Q 037839 110 TCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWL-RLHPTCPVCRT-SPLPTPLSTP 165 (177)
Q Consensus 110 ~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl-~~~~~CP~CR~-~~~~~~~~~~ 165 (177)
..|+.|-.-+.++ ...+.|+|.||.+||..-| .....||.|.+ +++.+.+.+-
T Consensus 275 LkCplc~~Llrnp---~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~pD 329 (427)
T COG5222 275 LKCPLCHCLLRNP---MKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTPD 329 (427)
T ss_pred ccCcchhhhhhCc---ccCccccchHHHHHHhhhhhhccccCCCcccccchhhccCcc
Confidence 5699998887766 3346799999999998655 56789999965 6655555443
No 85
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=95.50 E-value=0.0066 Score=35.15 Aligned_cols=41 Identities=24% Similarity=0.622 Sum_probs=22.3
Q ss_pred CccccccccCCCceeecCCCCCcccHhhHHHHHhcCC--CCcCC
Q 037839 112 CSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHP--TCPVC 153 (177)
Q Consensus 112 C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~--~CP~C 153 (177)
|.+|-+-...+...... +|+=.+|..|+..+++... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~-~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNR-DCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS---S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCC-ccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 55666666655433322 3888899999999997655 69987
No 86
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.42 E-value=0.022 Score=47.22 Aligned_cols=47 Identities=28% Similarity=0.626 Sum_probs=35.2
Q ss_pred CCcccCccccccccCCCceeecCCCCCcccHhhHHHH--HhcCCCCcCCCCCC
Q 037839 107 STATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPW--LRLHPTCPVCRTSP 157 (177)
Q Consensus 107 ~~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~W--l~~~~~CP~CR~~~ 157 (177)
.+...|.||-+.... ...+| |+|..|.-|.-+. |-..+.||+||..-
T Consensus 59 Een~~C~ICA~~~TY---s~~~P-C~H~~CH~Ca~RlRALY~~K~C~~CrTE~ 107 (493)
T COG5236 59 EENMNCQICAGSTTY---SARYP-CGHQICHACAVRLRALYMQKGCPLCRTET 107 (493)
T ss_pred cccceeEEecCCceE---EEecc-CCchHHHHHHHHHHHHHhccCCCcccccc
Confidence 345679999888554 46788 9999999997553 34567899999853
No 87
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=95.12 E-value=0.033 Score=33.76 Aligned_cols=34 Identities=21% Similarity=0.692 Sum_probs=30.2
Q ss_pred cccCccccccccCCCceeecCCCCCcccHhhHHH
Q 037839 109 ATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDP 142 (177)
Q Consensus 109 ~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~ 142 (177)
...|.+|-+.|.+++.+.+-|.||=.+|.+|.+.
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 4569999999998888889999999999999855
No 88
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.04 E-value=0.011 Score=53.81 Aligned_cols=43 Identities=23% Similarity=0.576 Sum_probs=33.1
Q ss_pred cccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCC
Q 037839 109 ATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSP 157 (177)
Q Consensus 109 ~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~ 157 (177)
...|..|--.+.-|- ..-. |||.||.+|++ .+...||-|+..+
T Consensus 840 ~skCs~C~~~LdlP~--VhF~-CgHsyHqhC~e---~~~~~CP~C~~e~ 882 (933)
T KOG2114|consen 840 VSKCSACEGTLDLPF--VHFL-CGHSYHQHCLE---DKEDKCPKCLPEL 882 (933)
T ss_pred eeeecccCCccccce--eeee-cccHHHHHhhc---cCcccCCccchhh
Confidence 357999988877663 3333 99999999998 4556899998744
No 89
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.86 E-value=0.023 Score=46.23 Aligned_cols=48 Identities=35% Similarity=0.748 Sum_probs=36.9
Q ss_pred cccCccccccccCCC---ceeecCCCCCcccHhhHHHHHhcC-CCCcCCCCCC
Q 037839 109 ATCCSICLADYRSSD---MLRLLPDCSHLFHVKCVDPWLRLH-PTCPVCRTSP 157 (177)
Q Consensus 109 ~~~C~ICl~~f~~~~---~v~~l~~C~H~fH~~Ci~~Wl~~~-~~CP~CR~~~ 157 (177)
...|-||-++|...+ .-+.|. |||.|+..|+..-+... ..||.||.+.
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~~l~-c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPRVLK-CGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CCceeecCccccccCcccCCcccc-cCceehHhHHHHHhcCceeeccCCCCcc
Confidence 346999999998763 234555 99999999997766543 4699999984
No 90
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=94.71 E-value=0.021 Score=51.57 Aligned_cols=25 Identities=32% Similarity=0.800 Sum_probs=22.5
Q ss_pred ecCCCCCcccHhhHHHHHhcCCCCcC
Q 037839 127 LLPDCSHLFHVKCVDPWLRLHPTCPV 152 (177)
Q Consensus 127 ~l~~C~H~fH~~Ci~~Wl~~~~~CP~ 152 (177)
... |+|+.|.+|...|+...-.||.
T Consensus 1045 Cg~-C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1045 CGT-CGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred hcc-ccccccHHHHHHHHhcCCcCCC
Confidence 444 9999999999999999999997
No 91
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=94.65 E-value=0.011 Score=48.16 Aligned_cols=45 Identities=24% Similarity=0.698 Sum_probs=30.4
Q ss_pred cccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCC
Q 037839 109 ATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPL 158 (177)
Q Consensus 109 ~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~ 158 (177)
...|.=|= |...-.-|+.| |.|+||.+|... ..-+.||.|-..++
T Consensus 90 VHfCd~Cd--~PI~IYGRmIP-CkHvFCl~CAr~--~~dK~Cp~C~d~Vq 134 (389)
T KOG2932|consen 90 VHFCDRCD--FPIAIYGRMIP-CKHVFCLECARS--DSDKICPLCDDRVQ 134 (389)
T ss_pred eEeecccC--Ccceeeecccc-cchhhhhhhhhc--CccccCcCcccHHH
Confidence 34466552 22223447888 999999999865 44678999976553
No 92
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.46 E-value=0.019 Score=44.65 Aligned_cols=40 Identities=33% Similarity=0.785 Sum_probs=31.2
Q ss_pred CccccccccCCCceeecCCCCCc-ccHhhHHHHHhcCCCCcCCCCCCCC
Q 037839 112 CSICLADYRSSDMLRLLPDCSHL-FHVKCVDPWLRLHPTCPVCRTSPLP 159 (177)
Q Consensus 112 C~ICl~~f~~~~~v~~l~~C~H~-fH~~Ci~~Wl~~~~~CP~CR~~~~~ 159 (177)
|-.|-+. +..|..+| |.|+ +|..|-.. -..||+|+.+...
T Consensus 161 Cr~C~~~---~~~VlllP-CrHl~lC~~C~~~----~~~CPiC~~~~~s 201 (207)
T KOG1100|consen 161 CRKCGER---EATVLLLP-CRHLCLCGICDES----LRICPICRSPKTS 201 (207)
T ss_pred ceecCcC---CceEEeec-ccceEeccccccc----CccCCCCcChhhc
Confidence 8888766 66788999 9988 88889865 2469999987643
No 93
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=94.42 E-value=0.025 Score=46.39 Aligned_cols=44 Identities=23% Similarity=0.627 Sum_probs=34.6
Q ss_pred CCcccCccccccccCCCceeecCCC--CCcccHhhHHHHHhcCCCCcCCCCCCC
Q 037839 107 STATCCSICLADYRSSDMLRLLPDC--SHLFHVKCVDPWLRLHPTCPVCRTSPL 158 (177)
Q Consensus 107 ~~~~~C~ICl~~f~~~~~v~~l~~C--~H~fH~~Ci~~Wl~~~~~CP~CR~~~~ 158 (177)
.+..+|+||.+.+..+ ... | ||+.|..|-. +.+..||.||.++.
T Consensus 46 ~~lleCPvC~~~l~~P----i~Q-C~nGHlaCssC~~---~~~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 46 LDLLDCPVCFNPLSPP----IFQ-CDNGHLACSSCRT---KVSNKCPTCRLPIG 91 (299)
T ss_pred hhhccCchhhccCccc----cee-cCCCcEehhhhhh---hhcccCCccccccc
Confidence 3556899999999988 333 5 7999999875 34567999999886
No 94
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.35 E-value=0.018 Score=45.73 Aligned_cols=51 Identities=27% Similarity=0.791 Sum_probs=35.9
Q ss_pred CcccCccccccccCCCc-eeecCCC-----CCcccHhhHHHHHhcCC--------CCcCCCCCCCC
Q 037839 108 TATCCSICLADYRSSDM-LRLLPDC-----SHLFHVKCVDPWLRLHP--------TCPVCRTSPLP 159 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~~-v~~l~~C-----~H~fH~~Ci~~Wl~~~~--------~CP~CR~~~~~ 159 (177)
.+..|-||+..=++... -.+-| | .|..|..|+..|+..++ .||-|++....
T Consensus 19 ~eR~CWiCF~TdeDn~~a~WV~P-CrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYii 83 (293)
T KOG3053|consen 19 LERCCWICFATDEDNRLAAWVHP-CRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYII 83 (293)
T ss_pred cceeEEEEeccCcccchhhhccc-ccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhee
Confidence 45679999987443321 12344 4 38899999999995532 59999998764
No 95
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=94.01 E-value=0.044 Score=45.94 Aligned_cols=29 Identities=24% Similarity=0.839 Sum_probs=22.9
Q ss_pred CCCcccHhhHHHHHhcCC-------------CCcCCCCCCCC
Q 037839 131 CSHLFHVKCVDPWLRLHP-------------TCPVCRTSPLP 159 (177)
Q Consensus 131 C~H~fH~~Ci~~Wl~~~~-------------~CP~CR~~~~~ 159 (177)
|.-.+|.+|+.+|+..++ .||+||+.+..
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCi 352 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCI 352 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCccccee
Confidence 667789999999995432 69999998754
No 96
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=93.26 E-value=0.029 Score=50.86 Aligned_cols=48 Identities=29% Similarity=0.680 Sum_probs=36.7
Q ss_pred ccCccccccccCCCceeecCCCCCcccHhhHHHHHhc--CCCCcCCCCCCCCCCC
Q 037839 110 TCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRL--HPTCPVCRTSPLPTPL 162 (177)
Q Consensus 110 ~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~--~~~CP~CR~~~~~~~~ 162 (177)
..|.||++ .+.....+ |+|.||.+|+..-+.. ...||+||..+....+
T Consensus 455 ~~c~ic~~----~~~~~it~-c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l 504 (674)
T KOG1001|consen 455 HWCHICCD----LDSFFITR-CGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKL 504 (674)
T ss_pred cccccccc----cccceeec-ccchHHHHHHHhccccccCCCCcHHHHHHHHHHH
Confidence 67999999 35555666 9999999999887654 3369999987765443
No 97
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.01 E-value=0.032 Score=49.62 Aligned_cols=45 Identities=22% Similarity=0.539 Sum_probs=31.9
Q ss_pred cccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCcCCCCC
Q 037839 109 ATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTS 156 (177)
Q Consensus 109 ~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~ 156 (177)
...|.||+..|......-+...|||..|..|...-.+ .+|| |+.+
T Consensus 11 ~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn--~scp-~~~D 55 (861)
T KOG3161|consen 11 LLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYN--ASCP-TKRD 55 (861)
T ss_pred HhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhh--ccCC-CCcc
Confidence 3469999998876543333334999999999987544 5788 6553
No 98
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=92.60 E-value=0.14 Score=37.88 Aligned_cols=32 Identities=28% Similarity=0.730 Sum_probs=19.9
Q ss_pred ccCccccccccCCCceeecC-----------CCCCcc-cHhhHHHHH
Q 037839 110 TCCSICLADYRSSDMLRLLP-----------DCSHLF-HVKCVDPWL 144 (177)
Q Consensus 110 ~~C~ICl~~f~~~~~v~~l~-----------~C~H~f-H~~Ci~~Wl 144 (177)
..|+||||.--+. .+|- -|+-.| |..|++++-
T Consensus 3 ~~CpICme~PHNA---VLLlCSS~~kgcRpymc~Ts~rhSNCLdqfk 46 (162)
T PF07800_consen 3 VTCPICMEHPHNA---VLLLCSSHEKGCRPYMCDTSYRHSNCLDQFK 46 (162)
T ss_pred ccCceeccCCCce---EEEEeccccCCccccccCCccchhHHHHHHH
Confidence 4699999984332 2222 155444 788999864
No 99
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.53 E-value=0.11 Score=43.73 Aligned_cols=47 Identities=15% Similarity=0.403 Sum_probs=38.1
Q ss_pred CcccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCC---CCcCCCC
Q 037839 108 TATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHP---TCPVCRT 155 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~---~CP~CR~ 155 (177)
....|+|=-+.-.+...-..|. |||+...+-+.+..++.. .||+|=.
T Consensus 333 SvF~CPVlKeqtsdeNPPm~L~-CGHVISkdAlnrLS~ng~~sfKCPYCP~ 382 (394)
T KOG2817|consen 333 SVFICPVLKEQTSDENPPMMLI-CGHVISKDALNRLSKNGSQSFKCPYCPV 382 (394)
T ss_pred ceeecccchhhccCCCCCeeee-ccceecHHHHHHHhhCCCeeeeCCCCCc
Confidence 4567999888877777777888 999999999999776644 6999943
No 100
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.14 E-value=0.069 Score=49.13 Aligned_cols=35 Identities=23% Similarity=0.557 Sum_probs=27.0
Q ss_pred CcccCccccccccCCCceeecCCCCCcccHhhHHHHH
Q 037839 108 TATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWL 144 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl 144 (177)
.+..|.+|-..+... .-.+-| |||.||++|+..=.
T Consensus 816 p~d~C~~C~~~ll~~-pF~vf~-CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 816 PQDSCDHCGRPLLIK-PFYVFP-CGHCFHRDCLIRHV 850 (911)
T ss_pred CccchHHhcchhhcC-cceeee-ccchHHHHHHHHHH
Confidence 466799998888754 334666 99999999997654
No 101
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=91.98 E-value=0.054 Score=51.64 Aligned_cols=47 Identities=28% Similarity=0.682 Sum_probs=38.0
Q ss_pred cccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCC
Q 037839 109 ATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPL 158 (177)
Q Consensus 109 ~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~ 158 (177)
...|.||++......- .. .|||.++..|+..|+..+..||.|+....
T Consensus 1153 ~~~c~ic~dil~~~~~--I~-~cgh~~c~~c~~~~l~~~s~~~~~ksi~~ 1199 (1394)
T KOG0298|consen 1153 HFVCEICLDILRNQGG--IA-GCGHEPCCRCDELWLYASSRCPICKSIKG 1199 (1394)
T ss_pred ccchHHHHHHHHhcCC--ee-eechhHhhhHHHHHHHHhccCcchhhhhh
Confidence 4479999999884433 23 39999999999999999999999985443
No 102
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.58 E-value=0.07 Score=45.30 Aligned_cols=52 Identities=27% Similarity=0.669 Sum_probs=34.7
Q ss_pred cccCccccccccCC-CceeecCCCCCcccHhhHHHHHhcC------CCCcC--CCCCCCCCC
Q 037839 109 ATCCSICLADYRSS-DMLRLLPDCSHLFHVKCVDPWLRLH------PTCPV--CRTSPLPTP 161 (177)
Q Consensus 109 ~~~C~ICl~~f~~~-~~v~~l~~C~H~fH~~Ci~~Wl~~~------~~CP~--CR~~~~~~~ 161 (177)
...|.||..+.... +.-.... |+|.||.+|....+..+ ..||- |...+....
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~-C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~~~~ 206 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLK-CGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLTLES 206 (384)
T ss_pred cccCccCccccccHhhhHHHhc-ccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCCHHH
Confidence 56799999555444 4444454 99999999999887642 25655 555554433
No 103
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=91.42 E-value=0.16 Score=42.09 Aligned_cols=54 Identities=17% Similarity=0.341 Sum_probs=37.0
Q ss_pred CcccCccccccccCCCceeecCCCCCcccHhhHHHHHhc-CCCCcCCCCCCCCCC
Q 037839 108 TATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRL-HPTCPVCRTSPLPTP 161 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~-~~~CP~CR~~~~~~~ 161 (177)
+++.|+.|++++...|.-..--+||-..|.-|...--+. +-.||-||+.+-..+
T Consensus 13 eed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~den 67 (480)
T COG5175 13 EEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDEN 67 (480)
T ss_pred ccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccc
Confidence 445599999999876654332248988777776553222 347999999876654
No 104
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=91.21 E-value=0.21 Score=35.90 Aligned_cols=54 Identities=26% Similarity=0.489 Sum_probs=36.6
Q ss_pred CcccCccccccccCCCceeecCCCCCcccHhhHHHHHh---cCCCCcCCCCCCCCCC
Q 037839 108 TATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLR---LHPTCPVCRTSPLPTP 161 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~---~~~~CP~CR~~~~~~~ 161 (177)
...+|-||.|...+..-+.=--.||-..|..|....++ .+..||+|+.++-+.+
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSS 135 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence 45679999988654321111114999999998766554 3678999999886544
No 105
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=91.00 E-value=0.081 Score=31.08 Aligned_cols=27 Identities=30% Similarity=0.795 Sum_probs=21.3
Q ss_pred CC-CcccHhhHHHHHhcCCCCcCCCCCC
Q 037839 131 CS-HLFHVKCVDPWLRLHPTCPVCRTSP 157 (177)
Q Consensus 131 C~-H~fH~~Ci~~Wl~~~~~CP~CR~~~ 157 (177)
|+ |..|..|+...+..+..||+|..++
T Consensus 18 C~dHYLCl~CLt~ml~~s~~C~iC~~~L 45 (50)
T PF03854_consen 18 CSDHYLCLNCLTLMLSRSDRCPICGKPL 45 (50)
T ss_dssp -SS-EEEHHHHHHT-SSSSEETTTTEE-
T ss_pred ecchhHHHHHHHHHhccccCCCcccCcC
Confidence 76 9999999999999999999998876
No 106
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=90.98 E-value=0.1 Score=29.60 Aligned_cols=21 Identities=19% Similarity=0.365 Sum_probs=8.0
Q ss_pred chhhHHHHHHHHHHHHHHHHH
Q 037839 23 YGIGVSVGILILITTITLASY 43 (177)
Q Consensus 23 ~~i~i~l~il~li~~i~l~~~ 43 (177)
.++++.+.+.++++++.+++|
T Consensus 13 Ia~~VvVPV~vI~~vl~~~l~ 33 (40)
T PF08693_consen 13 IAVGVVVPVGVIIIVLGAFLF 33 (40)
T ss_pred EEEEEEechHHHHHHHHHHhh
Confidence 333444444333333333333
No 107
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=90.48 E-value=0.18 Score=46.27 Aligned_cols=57 Identities=23% Similarity=0.557 Sum_probs=41.4
Q ss_pred CCCcccCccccccccCCCceeecC-CCC---CcccHhhHHHHHhc--CCCCcCCCCCCCCCCCC
Q 037839 106 DSTATCCSICLADYRSSDMLRLLP-DCS---HLFHVKCVDPWLRL--HPTCPVCRTSPLPTPLS 163 (177)
Q Consensus 106 ~~~~~~C~ICl~~f~~~~~v~~l~-~C~---H~fH~~Ci~~Wl~~--~~~CP~CR~~~~~~~~~ 163 (177)
+.+...|.||..+=..++.+. -| +|. ...|.+|+.+|+.- ...|-+|+.++.-+..+
T Consensus 9 N~d~~~CRICr~e~~~d~pLf-hPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk~IY 71 (1175)
T COG5183 9 NEDKRSCRICRTEDIRDDPLF-HPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKDIY 71 (1175)
T ss_pred CccchhceeecCCCCCCCcCc-ccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeeeeec
Confidence 345578999999977777663 34 233 33799999999964 45799999988765543
No 108
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.30 E-value=0.14 Score=41.50 Aligned_cols=31 Identities=23% Similarity=0.521 Sum_probs=24.7
Q ss_pred CCCcccHhhHHHHHhc-------------CCCCcCCCCCCCCCC
Q 037839 131 CSHLFHVKCVDPWLRL-------------HPTCPVCRTSPLPTP 161 (177)
Q Consensus 131 C~H~fH~~Ci~~Wl~~-------------~~~CP~CR~~~~~~~ 161 (177)
|...+|.+|+.+|+.. +-+||+||+.+....
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~d 368 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRD 368 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEee
Confidence 7788999999999843 348999999886543
No 109
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=89.17 E-value=0.17 Score=41.00 Aligned_cols=58 Identities=24% Similarity=0.548 Sum_probs=39.9
Q ss_pred cCccccc-cccCCCceeecCCCCCcccHhhHHHHHhc-CCCCcCCCCCCCCCCCCCCccc
Q 037839 111 CCSICLA-DYRSSDMLRLLPDCSHLFHVKCVDPWLRL-HPTCPVCRTSPLPTPLSTPLAE 168 (177)
Q Consensus 111 ~C~ICl~-~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~-~~~CP~CR~~~~~~~~~~~~~~ 168 (177)
.|++|-. .|.+++...+...|+|-.|..|.+.-+.. ...||-|-..+.-.++-..+-|
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~nfr~q~fE 61 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKNNFRVQTFE 61 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhcccchhhcc
Confidence 3777754 34556644433359999999999998854 5589999887776665443333
No 110
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=88.68 E-value=0.24 Score=40.31 Aligned_cols=51 Identities=27% Similarity=0.694 Sum_probs=36.8
Q ss_pred cccCccccccccCCCc-eeecCCCC-----CcccHhhHHHHHh--cCCCCcCCCCCCCCC
Q 037839 109 ATCCSICLADYRSSDM-LRLLPDCS-----HLFHVKCVDPWLR--LHPTCPVCRTSPLPT 160 (177)
Q Consensus 109 ~~~C~ICl~~f~~~~~-v~~l~~C~-----H~fH~~Ci~~Wl~--~~~~CP~CR~~~~~~ 160 (177)
+..|-||.++...... ....| |. +..|..|+..|+. .+..|.+|.......
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~p-C~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~ 136 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISP-CSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINV 136 (323)
T ss_pred CCcEEEEecccccccccccccC-ccccCcHHHHHHHHHHhhhccccCeeeecccccceec
Confidence 4679999998654331 23444 53 5579999999997 456799999877654
No 111
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=88.19 E-value=0.27 Score=36.18 Aligned_cols=31 Identities=32% Similarity=0.518 Sum_probs=16.8
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHhhccCcch
Q 037839 21 FGYGIGVSVGILILITTITLASYFCTRGQQQ 51 (177)
Q Consensus 21 ~~~~i~i~l~il~li~~i~l~~~~~~r~~~~ 51 (177)
+.+++++-+|+.+++.++.++|+||.|+++.
T Consensus 50 IVIGvVVGVGg~ill~il~lvf~~c~r~kkt 80 (154)
T PF04478_consen 50 IVIGVVVGVGGPILLGILALVFIFCIRRKKT 80 (154)
T ss_pred EEEEEEecccHHHHHHHHHhheeEEEecccC
Confidence 3445555555555555555556666665543
No 112
>PRK06287 cobalt transport protein CbiN; Validated
Probab=86.78 E-value=1.2 Score=30.91 Aligned_cols=38 Identities=16% Similarity=0.233 Sum_probs=26.6
Q ss_pred CCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHhhccC
Q 037839 9 SDGFLGSSNIGGFGYGIGVSVGILILITTITLASYFCTRG 48 (177)
Q Consensus 9 ~~~~~~~~~~~~~~~~i~i~l~il~li~~i~l~~~~~~r~ 48 (177)
.||..++ ...++|++..++|+++++.++..+.+..+|+
T Consensus 67 pDY~i~g--~~~~g~ilsgiiGv~i~l~l~~~~~~~l~r~ 104 (107)
T PRK06287 67 PDYSIPG--MGKIGEIIAMVIGTLLVLALAYGVGKIFKKK 104 (107)
T ss_pred CCCCCCC--CcchhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4666665 3357899988888877777777766666554
No 113
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=86.29 E-value=0.8 Score=27.20 Aligned_cols=42 Identities=24% Similarity=0.596 Sum_probs=18.3
Q ss_pred cCccccccccCCCceeecCCCCCcccHhhHHHHHhc-----CCCCcCCCCC
Q 037839 111 CCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRL-----HPTCPVCRTS 156 (177)
Q Consensus 111 ~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~-----~~~CP~CR~~ 156 (177)
.|+|....+..+ +|-.. |.|+-+-+ ++.|+.. ...||+|.++
T Consensus 4 ~CPls~~~i~~P--~Rg~~-C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 4 RCPLSFQRIRIP--VRGKN-CKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp B-TTTSSB-SSE--EEETT---SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eCCCCCCEEEeC--ccCCc-CcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 478887777655 55555 99983222 2344422 3479999864
No 114
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=85.81 E-value=0.18 Score=39.85 Aligned_cols=64 Identities=23% Similarity=0.497 Sum_probs=41.3
Q ss_pred cccCcccccc-ccCCCcee-ecCCCCCcccHhhHHHHHhc-CCCCc--CCCCCCCCCCCCCCcccccCC
Q 037839 109 ATCCSICLAD-YRSSDMLR-LLPDCSHLFHVKCVDPWLRL-HPTCP--VCRTSPLPTPLSTPLAEVVPL 172 (177)
Q Consensus 109 ~~~C~ICl~~-f~~~~~v~-~l~~C~H~fH~~Ci~~Wl~~-~~~CP--~CR~~~~~~~~~~~~~~~~~~ 172 (177)
+..|+||..+ |.+|+... +-|.|-|..|.+|.++-+.. ...|| -|-.-+.-..+-...-+..++
T Consensus 10 d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILRK~kf~~qtFeD~~v 78 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILRKIKFIKQTFEDITV 78 (314)
T ss_pred cccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHhcccccccchhhh
Confidence 4469999865 45666433 44459999999999999866 45899 575544333333334344433
No 115
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=85.70 E-value=1.1 Score=31.84 Aligned_cols=13 Identities=31% Similarity=0.376 Sum_probs=5.2
Q ss_pred HHHHHhhccCcch
Q 037839 39 TLASYFCTRGQQQ 51 (177)
Q Consensus 39 ~l~~~~~~r~~~~ 51 (177)
++++|+++|++++
T Consensus 82 lli~y~irR~~Kk 94 (122)
T PF01102_consen 82 LLISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHS--
T ss_pred HHHHHHHHHHhcc
Confidence 3444555444443
No 116
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=85.29 E-value=0.7 Score=42.16 Aligned_cols=40 Identities=20% Similarity=0.360 Sum_probs=29.4
Q ss_pred cCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCcC
Q 037839 111 CCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPV 152 (177)
Q Consensus 111 ~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~ 152 (177)
.|++|-.... +..+..- .|||.-|.+|+.+|+....-||.
T Consensus 781 ~CtVC~~vi~-G~~~~c~-~C~H~gH~sh~~sw~~~~s~ca~ 820 (839)
T KOG0269|consen 781 KCTVCDLVIR-GVDVWCQ-VCGHGGHDSHLKSWFFKASPCAK 820 (839)
T ss_pred Cceeecceee-eeEeecc-cccccccHHHHHHHHhcCCCCcc
Confidence 5888866544 2233333 49999999999999988877765
No 117
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=84.72 E-value=0.24 Score=44.69 Aligned_cols=47 Identities=26% Similarity=0.672 Sum_probs=36.4
Q ss_pred cccCccccccccCCCceeecCCCCCcccHhhHHHHHhc---CCCCcCCCCCCCC
Q 037839 109 ATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRL---HPTCPVCRTSPLP 159 (177)
Q Consensus 109 ~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~---~~~CP~CR~~~~~ 159 (177)
..+|.||+..+..+ ..+ +|.|+|+..|+..-+.. ...||+|+..+.-
T Consensus 21 ~lEc~ic~~~~~~p---~~~-kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK 70 (684)
T KOG4362|consen 21 ILECPICLEHVKEP---SLL-KCDHIFLKFCLNKLFESKKGPKQCALCKSDIEK 70 (684)
T ss_pred hccCCceeEEeecc---chh-hhhHHHHhhhhhceeeccCccccchhhhhhhhh
Confidence 45799999999887 344 49999999998776643 3479999976643
No 118
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=84.39 E-value=2 Score=31.50 Aligned_cols=28 Identities=21% Similarity=0.555 Sum_probs=20.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhhccCcchh
Q 037839 25 IGVSVGILILITTITLASYFCTRGQQQQ 52 (177)
Q Consensus 25 i~i~l~il~li~~i~l~~~~~~r~~~~~ 52 (177)
+.|+++|.++++.|++..|+|.++.+..
T Consensus 32 ~tILiaIvVliiiiivli~lcssRKkKa 59 (189)
T PF05568_consen 32 YTILIAIVVLIIIIIVLIYLCSSRKKKA 59 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 3677777777777777777777665554
No 119
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=84.10 E-value=0.97 Score=24.35 Aligned_cols=37 Identities=19% Similarity=0.515 Sum_probs=24.5
Q ss_pred CccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCC
Q 037839 112 CSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPL 158 (177)
Q Consensus 112 C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~ 158 (177)
|..|-..+...+..... =+..||.+|+ .|..|+.+|.
T Consensus 2 C~~C~~~i~~~~~~~~~--~~~~~H~~Cf--------~C~~C~~~L~ 38 (39)
T smart00132 2 CAGCGKPIRGGELVLRA--LGKVWHPECF--------KCSKCGKPLG 38 (39)
T ss_pred ccccCCcccCCcEEEEe--CCccccccCC--------CCcccCCcCc
Confidence 77777777665333222 4788998887 5788877663
No 120
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=83.27 E-value=0.37 Score=30.19 Aligned_cols=26 Identities=27% Similarity=0.293 Sum_probs=0.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhccCc
Q 037839 24 GIGVSVGILILITTITLASYFCTRGQ 49 (177)
Q Consensus 24 ~i~i~l~il~li~~i~l~~~~~~r~~ 49 (177)
..++++|+++.++++++++|.++++.
T Consensus 15 IaG~Vvgll~ailLIlf~iyR~rkkd 40 (64)
T PF01034_consen 15 IAGGVVGLLFAILLILFLIYRMRKKD 40 (64)
T ss_dssp ----------------------S---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33555666666666666666555443
No 121
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=83.13 E-value=0.77 Score=27.52 Aligned_cols=43 Identities=21% Similarity=0.459 Sum_probs=21.7
Q ss_pred CccccccccCCC------ceeecCCCCCcccHhhHHHHHhcCCCCcCCC
Q 037839 112 CSICLADYRSSD------MLRLLPDCSHLFHVKCVDPWLRLHPTCPVCR 154 (177)
Q Consensus 112 C~ICl~~f~~~~------~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR 154 (177)
|--|+..|..+. ....-+.|++.|+.+|=.---..-.+||-|-
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHHHHTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCcChhhhccccCCcCCC
Confidence 455666666542 3456667999999999532123445799883
No 122
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=83.00 E-value=0.96 Score=34.96 Aligned_cols=41 Identities=32% Similarity=0.825 Sum_probs=28.4
Q ss_pred cccCcccccc-----ccCCCceeecCCCCCcccHhhHHHHHhcCCCCcCCCC
Q 037839 109 ATCCSICLAD-----YRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRT 155 (177)
Q Consensus 109 ~~~C~ICl~~-----f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~ 155 (177)
+..|-+|-+. |+. +.+..-+.|+-+||..|... ..||-|-+
T Consensus 152 GfiCe~C~~~~~IfPF~~-~~~~~C~~C~~v~H~~C~~~-----~~CpkC~R 197 (202)
T PF13901_consen 152 GFICEICNSDDIIFPFQI-DTTVRCPKCKSVFHKSCFRK-----KSCPKCAR 197 (202)
T ss_pred CCCCccCCCCCCCCCCCC-CCeeeCCcCccccchhhcCC-----CCCCCcHh
Confidence 5678888753 222 24445556999999999973 67999954
No 123
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=82.94 E-value=0.76 Score=42.25 Aligned_cols=53 Identities=8% Similarity=0.101 Sum_probs=37.2
Q ss_pred CCcccCccccccccCCCc---eeecCCCCCcccHhhHHHHHhc------CCCCcCCCCCCCC
Q 037839 107 STATCCSICLADYRSSDM---LRLLPDCSHLFHVKCVDPWLRL------HPTCPVCRTSPLP 159 (177)
Q Consensus 107 ~~~~~C~ICl~~f~~~~~---v~~l~~C~H~fH~~Ci~~Wl~~------~~~CP~CR~~~~~ 159 (177)
.+...|.+|.-++..++. +.-+.+|+|.||..||..|..+ +-.|+.|...+..
T Consensus 94 a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~s 155 (1134)
T KOG0825|consen 94 AESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGS 155 (1134)
T ss_pred ccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhhh
Confidence 345668888888887432 2222359999999999999854 2358889876654
No 124
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=82.60 E-value=0.76 Score=39.48 Aligned_cols=35 Identities=31% Similarity=0.611 Sum_probs=29.0
Q ss_pred CcccCccccccccCCCceeecCCCCCcccHhhHHHHHhc
Q 037839 108 TATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRL 146 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~ 146 (177)
++..|+||..-|.++ ++|| |+|..|..|...-+.+
T Consensus 3 eelkc~vc~~f~~ep---iil~-c~h~lc~~ca~~~~~~ 37 (699)
T KOG4367|consen 3 EELKCPVCGSFYREP---IILP-CSHNLCQACARNILVQ 37 (699)
T ss_pred ccccCceehhhccCc---eEee-cccHHHHHHHHhhccc
Confidence 345799999999988 6888 9999999999775543
No 125
>PTZ00370 STEVOR; Provisional
Probab=82.03 E-value=1.5 Score=35.64 Aligned_cols=29 Identities=24% Similarity=0.411 Sum_probs=14.6
Q ss_pred CccchhhHHHHHHHHHHHHHHHHHhhccC
Q 037839 20 GFGYGIGVSVGILILITTITLASYFCTRG 48 (177)
Q Consensus 20 ~~~~~i~i~l~il~li~~i~l~~~~~~r~ 48 (177)
...|+|+.++.+++.+++|++.+|+.+||
T Consensus 254 F~Pygiaalvllil~vvliilYiwlyrrR 282 (296)
T PTZ00370 254 FYPYGIAALVLLILAVVLIILYIWLYRRR 282 (296)
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34577765555555555544444433333
No 126
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=81.62 E-value=3.7 Score=28.69 Aligned_cols=20 Identities=20% Similarity=0.341 Sum_probs=14.3
Q ss_pred HHHhcCCCCcCCCCCCCCCC
Q 037839 142 PWLRLHPTCPVCRTSPLPTP 161 (177)
Q Consensus 142 ~Wl~~~~~CP~CR~~~~~~~ 161 (177)
..+.+...|+.|++++..++
T Consensus 80 KmLGr~D~CM~C~~pLTLd~ 99 (114)
T PF11023_consen 80 KMLGRVDACMHCKEPLTLDP 99 (114)
T ss_pred hhhchhhccCcCCCcCccCc
Confidence 33445557999999998654
No 127
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=80.69 E-value=2.3 Score=30.25 Aligned_cols=32 Identities=19% Similarity=0.261 Sum_probs=20.1
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHhhccCcchh
Q 037839 21 FGYGIGVSVGILILITTITLASYFCTRGQQQQ 52 (177)
Q Consensus 21 ~~~~i~i~l~il~li~~i~l~~~~~~r~~~~~ 52 (177)
.++.++++.|++++|+++++.+...+++....
T Consensus 67 ~~Ii~gv~aGvIg~Illi~y~irR~~Kk~~~~ 98 (122)
T PF01102_consen 67 IGIIFGVMAGVIGIILLISYCIRRLRKKSSSD 98 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS------
T ss_pred eehhHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 44556788888888888888888777777665
No 128
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=79.79 E-value=1.3 Score=36.49 Aligned_cols=28 Identities=21% Similarity=0.275 Sum_probs=12.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHhhccCcc
Q 037839 23 YGIGVSVGILILITTITLASYFCTRGQQ 50 (177)
Q Consensus 23 ~~i~i~l~il~li~~i~l~~~~~~r~~~ 50 (177)
..|..++..+++|++++++.|+..|.||
T Consensus 256 t~I~aSiiaIliIVLIMvIIYLILRYRR 283 (299)
T PF02009_consen 256 TAIIASIIAILIIVLIMVIIYLILRYRR 283 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444455554444433
No 129
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=79.72 E-value=2.9 Score=29.27 Aligned_cols=45 Identities=20% Similarity=0.376 Sum_probs=34.2
Q ss_pred ccCccccccccCCC----------ceeecCCCCCcccHhhHHHHHhcCCCCcCCC
Q 037839 110 TCCSICLADYRSSD----------MLRLLPDCSHLFHVKCVDPWLRLHPTCPVCR 154 (177)
Q Consensus 110 ~~C~ICl~~f~~~~----------~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR 154 (177)
..|--|+..|..+. ....-+.|++.|+.+|=.-+-..-.+||-|-
T Consensus 56 ~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 56 RFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 46999999987531 2234456999999999877777777899995
No 130
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.78 E-value=0.8 Score=41.97 Aligned_cols=43 Identities=21% Similarity=0.488 Sum_probs=30.7
Q ss_pred cccCccccccccC----CCceeecCCCCCcccHhhHHHHHhcCCCCcCC
Q 037839 109 ATCCSICLADYRS----SDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVC 153 (177)
Q Consensus 109 ~~~C~ICl~~f~~----~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~C 153 (177)
+..|.-|++.... .+.+.++. |||+||..|+..-..+++ |-.|
T Consensus 784 e~rc~~c~~~~l~~~~~~~~~~v~~-c~h~yhk~c~~~~~~~~~-~~~~ 830 (846)
T KOG2066|consen 784 EERCSSCFEPNLPSGAAFDSVVVFH-CGHMYHKECLMMESLRNA-CNIE 830 (846)
T ss_pred hhhhhhhcccccccCcccceeeEEE-ccchhhhcccccHHHhcc-cChh
Confidence 3469999887652 24677776 999999999977665544 5444
No 131
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=78.58 E-value=1.4 Score=39.22 Aligned_cols=45 Identities=33% Similarity=0.881 Sum_probs=36.6
Q ss_pred CcccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCCCC
Q 037839 108 TATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPLPT 160 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~~~ 160 (177)
....|.||+.+. ..+..+ |. |..|+..|+..+..||+|+..+...
T Consensus 478 ~~~~~~~~~~~~----~~~~~~-~~---~~~~l~~~~~~~~~~pl~~~~~~~~ 522 (543)
T KOG0802|consen 478 PNDVCAICYQEM----SARITP-CS---HALCLRKWLYVQEVCPLCHTYMKED 522 (543)
T ss_pred ccCcchHHHHHH----Hhcccc-cc---chhHHHhhhhhccccCCCchhhhcc
Confidence 456799999997 345555 77 8999999999999999999877654
No 132
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=78.52 E-value=1 Score=28.18 Aligned_cols=36 Identities=17% Similarity=0.362 Sum_probs=18.0
Q ss_pred CcccCccccccccCCCceeecCCCCCcccHhhHHHH
Q 037839 108 TATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPW 143 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~W 143 (177)
+...|.+|...|..-..-..-..||++|+..|....
T Consensus 8 ~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~ 43 (69)
T PF01363_consen 8 EASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQR 43 (69)
T ss_dssp G-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EE
T ss_pred CCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCE
Confidence 345799999999754432333359999999998654
No 133
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=77.89 E-value=4.3 Score=27.05 Aligned_cols=10 Identities=20% Similarity=0.102 Sum_probs=4.2
Q ss_pred CccchhhHHH
Q 037839 20 GFGYGIGVSV 29 (177)
Q Consensus 20 ~~~~~i~i~l 29 (177)
++++.++++.
T Consensus 32 ~Lgm~~lvI~ 41 (94)
T PF05393_consen 32 NLGMWFLVIC 41 (94)
T ss_pred ccchhHHHHH
Confidence 4444443333
No 134
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PRK09458 pspB phage shock protein B; Provisional
Probab=77.69 E-value=2.6 Score=27.26 Aligned_cols=26 Identities=12% Similarity=0.042 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhccCcch
Q 037839 26 GVSVGILILITTITLASYFCTRGQQQ 51 (177)
Q Consensus 26 ~i~l~il~li~~i~l~~~~~~r~~~~ 51 (177)
+.++.+++++..+++++.|..+++..
T Consensus 8 ~PliiF~ifVaPiWL~LHY~sk~~~~ 33 (75)
T PRK09458 8 IPLTIFVLFVAPIWLWLHYRSKRQGS 33 (75)
T ss_pred HhHHHHHHHHHHHHHHHhhcccccCC
Confidence 34444455555666666665555433
No 136
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=77.18 E-value=2.7 Score=34.75 Aligned_cols=53 Identities=25% Similarity=0.537 Sum_probs=36.0
Q ss_pred CCcccCccccccccC----------------CCceeecCCCCCcccHhhHHHHHhc---------CCCCcCCCCCCCCC
Q 037839 107 STATCCSICLADYRS----------------SDMLRLLPDCSHLFHVKCVDPWLRL---------HPTCPVCRTSPLPT 160 (177)
Q Consensus 107 ~~~~~C~ICl~~f~~----------------~~~v~~l~~C~H~fH~~Ci~~Wl~~---------~~~CP~CR~~~~~~ 160 (177)
....+|++|+..-.. +-.....| |||+--..-..-|-+. +..||.|-+.+...
T Consensus 339 ~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~P-CGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ge 416 (429)
T KOG3842|consen 339 QRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNP-CGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAGE 416 (429)
T ss_pred cccCcCCeeeeecceeeeeccccceeEecCCCcccccCC-cccccchhhhhHhhcCcCCCccccccccCcchhhhhccC
Confidence 346789999976320 11233556 9999888888888654 34799998777543
No 137
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=76.93 E-value=4.6 Score=24.61 Aligned_cols=46 Identities=26% Similarity=0.631 Sum_probs=32.9
Q ss_pred cCccccccccCCC-ceeecCCCCC--cccHhhHHHHHhcCCCCcCCCCCCCCCC
Q 037839 111 CCSICLADYRSSD-MLRLLPDCSH--LFHVKCVDPWLRLHPTCPVCRTSPLPTP 161 (177)
Q Consensus 111 ~C~ICl~~f~~~~-~v~~l~~C~H--~fH~~Ci~~Wl~~~~~CP~CR~~~~~~~ 161 (177)
.|--|-.++..+. +.++ |.+ -|+.+|.+..+ +..||.|-..+...+
T Consensus 7 nCE~C~~dLp~~s~~A~I---CSfECTFC~~C~e~~l--~~~CPNCgGelv~RP 55 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEAYI---CSFECTFCADCAETML--NGVCPNCGGELVRRP 55 (57)
T ss_pred CccccCCCCCCCCCcceE---EeEeCcccHHHHHHHh--cCcCcCCCCccccCC
Confidence 4777777776554 2222 653 49999999976 468999999887765
No 138
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.45 E-value=2.8 Score=33.56 Aligned_cols=50 Identities=14% Similarity=0.263 Sum_probs=35.5
Q ss_pred CcccCccccccccCCCc-eeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCCCC
Q 037839 108 TATCCSICLADYRSSDM-LRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPLPT 160 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~~-v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~~~ 160 (177)
....|+|=--+|...-. +...+ |||+|-..-+.+ .+..+|++|.+.+...
T Consensus 110 a~fiCPvtgleMng~~~F~~l~~-CGcV~SerAlKe--ikas~C~~C~a~y~~~ 160 (293)
T KOG3113|consen 110 ARFICPVTGLEMNGKYRFCALRC-CGCVFSERALKE--IKASVCHVCGAAYQED 160 (293)
T ss_pred ceeecccccceecceEEEEEEec-cceeccHHHHHH--hhhccccccCCccccc
Confidence 35668887777665443 33444 999998877766 2367899999988654
No 139
>PTZ00046 rifin; Provisional
Probab=75.43 E-value=2.2 Score=35.81 Aligned_cols=32 Identities=19% Similarity=0.288 Sum_probs=17.0
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHhhccCcchh
Q 037839 21 FGYGIGVSVGILILITTITLASYFCTRGQQQQ 52 (177)
Q Consensus 21 ~~~~i~i~l~il~li~~i~l~~~~~~r~~~~~ 52 (177)
+...|+.++..+++|+++.++.|+..|.||..
T Consensus 313 ~~taIiaSiiAIvVIVLIMvIIYLILRYRRKK 344 (358)
T PTZ00046 313 LQTAIIASIVAIVVIVLIMVIIYLILRYRRKK 344 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 33445555555555555556666555555443
No 140
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=75.20 E-value=1.6 Score=25.54 Aligned_cols=42 Identities=31% Similarity=0.725 Sum_probs=27.7
Q ss_pred CccccccccCCCceeecCCCCCcccHhhHHHHHh------cCCCCcCCC
Q 037839 112 CSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLR------LHPTCPVCR 154 (177)
Q Consensus 112 C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~------~~~~CP~CR 154 (177)
|.||-.....++.+.-- .|+..||..|+..=.. ....||.|+
T Consensus 2 C~vC~~~~~~~~~i~C~-~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 2 CPVCGQSDDDGDMIQCD-SCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp BTTTTSSCTTSSEEEBS-TTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred CcCCCCcCCCCCeEEcC-CCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 78888854444455444 4999999999854321 245688774
No 141
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=75.11 E-value=0.91 Score=40.48 Aligned_cols=42 Identities=29% Similarity=0.780 Sum_probs=25.2
Q ss_pred cccCccccc-----cccCCCceeecCCCCCcccHhhHHHHHhcCCCCcCCC
Q 037839 109 ATCCSICLA-----DYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCR 154 (177)
Q Consensus 109 ~~~C~ICl~-----~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR 154 (177)
...|.+|-. .|+.....+... |+++||..|... ++..||.|-
T Consensus 511 gfiCe~Cq~~~iiyPF~~~~~~rC~~-C~avfH~~C~~r---~s~~CPrC~ 557 (580)
T KOG1829|consen 511 GFICELCQHNDIIYPFETRNTRRCST-CLAVFHKKCLRR---KSPCCPRCE 557 (580)
T ss_pred eeeeeeccCCCcccccccccceeHHH-HHHHHHHHHHhc---cCCCCCchH
Confidence 455777722 122122233444 999999999855 233499994
No 142
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=75.06 E-value=2.5 Score=34.76 Aligned_cols=36 Identities=14% Similarity=0.084 Sum_probs=24.6
Q ss_pred CCCCCccchhhHHHHHHHHHHHHHHHHHhhccCcch
Q 037839 16 SNIGGFGYGIGVSVGILILITTITLASYFCTRGQQQ 51 (177)
Q Consensus 16 ~~~~~~~~~i~i~l~il~li~~i~l~~~~~~r~~~~ 51 (177)
+.-..+.++++.++.|+++++.|+++++|.|++...
T Consensus 253 ~~~t~I~aSiiaIliIVLIMvIIYLILRYRRKKKmk 288 (299)
T PF02009_consen 253 SLTTAIIASIIAILIIVLIMVIIYLILRYRRKKKMK 288 (299)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 344567777777777777777778888777755444
No 143
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=75.03 E-value=1.7 Score=25.93 Aligned_cols=40 Identities=15% Similarity=0.456 Sum_probs=24.0
Q ss_pred CccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCCCCC
Q 037839 112 CSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPLPTP 161 (177)
Q Consensus 112 C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~~~~ 161 (177)
|+-|-..+...+.+.. . -+..||.+|+ .|-.|+.++....
T Consensus 1 C~~C~~~I~~~~~~~~-~-~~~~~H~~Cf--------~C~~C~~~l~~~~ 40 (58)
T PF00412_consen 1 CARCGKPIYGTEIVIK-A-MGKFWHPECF--------KCSKCGKPLNDGD 40 (58)
T ss_dssp BTTTSSBESSSSEEEE-E-TTEEEETTTS--------BETTTTCBTTTSS
T ss_pred CCCCCCCccCcEEEEE-e-CCcEEEcccc--------ccCCCCCccCCCe
Confidence 5556666664443322 2 5677887776 5777777775544
No 144
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=74.87 E-value=2.5 Score=35.46 Aligned_cols=31 Identities=19% Similarity=0.216 Sum_probs=16.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhhccCcchh
Q 037839 22 GYGIGVSVGILILITTITLASYFCTRGQQQQ 52 (177)
Q Consensus 22 ~~~i~i~l~il~li~~i~l~~~~~~r~~~~~ 52 (177)
...|+.++..+++|+++.++.|+..|.||..
T Consensus 309 ~t~IiaSiIAIvvIVLIMvIIYLILRYRRKK 339 (353)
T TIGR01477 309 YTPIIASIIAILIIVLIMVIIYLILRYRRKK 339 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 3444455555555555556666555554443
No 145
>PF15179 Myc_target_1: Myc target protein 1
Probab=74.62 E-value=5.8 Score=30.18 Aligned_cols=35 Identities=20% Similarity=0.168 Sum_probs=18.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCccchhhHHHHHHHHH
Q 037839 1 MNETTVKASDGFLGSSNIGGFGYGIGVSVGILILI 35 (177)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~i~i~l~il~li 35 (177)
|.+-...+-..+-.+.+.+.+.+++.+...|.++|
T Consensus 1 MA~N~T~~~~~~~~~f~~~~lIlaF~vSm~iGLvi 35 (197)
T PF15179_consen 1 MANNTTSLLLEWLENFDWEDLILAFCVSMAIGLVI 35 (197)
T ss_pred CCCCcccccccchhhcchhhHHHHHHHHHHHHHHH
Confidence 33334444445556666777776664444443333
No 146
>PRK11486 flagellar biosynthesis protein FliO; Provisional
Probab=73.68 E-value=8.4 Score=27.49 Aligned_cols=28 Identities=21% Similarity=0.183 Sum_probs=16.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhhccCc
Q 037839 22 GYGIGVSVGILILITTITLASYFCTRGQ 49 (177)
Q Consensus 22 ~~~i~i~l~il~li~~i~l~~~~~~r~~ 49 (177)
++.+.++.+.++++.+|+++.|+.+|..
T Consensus 16 ~~l~qv~~~L~lVl~lI~~~aWLlkR~~ 43 (124)
T PRK11486 16 SPLLQVSGALIGIIALILAAAWLVKRLG 43 (124)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3445555555566566666666666653
No 147
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=73.64 E-value=2.3 Score=36.83 Aligned_cols=51 Identities=25% Similarity=0.537 Sum_probs=36.4
Q ss_pred CcccCccccccccCCCceeecCCCCCcccHhhHHHHHhcC--------CCCcC--CCCCCCCCC
Q 037839 108 TATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLH--------PTCPV--CRTSPLPTP 161 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~--------~~CP~--CR~~~~~~~ 161 (177)
....|-||.+.+.. .+..+. |||.|+..|....+.++ -+||. |++.+....
T Consensus 69 ~~~~c~ic~~~~~~--~~~~~~-c~H~~c~~cw~~yl~~kI~~~~~~~i~cp~~~C~a~v~~~~ 129 (444)
T KOG1815|consen 69 GDVQCGICVESYDG--EIIGLG-CGHPFCPPCWTGYLGTKIHEGEEAKIKCPAHGCPALVGEDT 129 (444)
T ss_pred ccccCCcccCCCcc--hhhhcC-CCcHHHHHHHHHHhhheeeccccccccCCCCCccccCCCce
Confidence 44579999999876 455665 99999999999888552 14544 666555443
No 148
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=73.31 E-value=6.8 Score=25.39 Aligned_cols=25 Identities=12% Similarity=0.151 Sum_probs=13.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhhccCc
Q 037839 25 IGVSVGILILITTITLASYFCTRGQ 49 (177)
Q Consensus 25 i~i~l~il~li~~i~l~~~~~~r~~ 49 (177)
++.++.+++++..+++++.|..+++
T Consensus 7 ~~plivf~ifVap~WL~lHY~sk~~ 31 (75)
T PF06667_consen 7 FVPLIVFMIFVAPIWLILHYRSKWK 31 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3444444455555666665555543
No 149
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=72.68 E-value=7.4 Score=27.68 Aligned_cols=34 Identities=15% Similarity=0.227 Sum_probs=21.4
Q ss_pred CCCCCCCCCccchhhHHHHHHHHHHHHHHHHHhh
Q 037839 12 FLGSSNIGGFGYGIGVSVGILILITTITLASYFC 45 (177)
Q Consensus 12 ~~~~~~~~~~~~~i~i~l~il~li~~i~l~~~~~ 45 (177)
|.--.+...|.|+|.++.++.+++.++++..=+.
T Consensus 26 ~fR~ED~tpWNysiL~Ls~vvlvi~~~LLgrsi~ 59 (125)
T PF15048_consen 26 FFRVEDATPWNYSILALSFVVLVISFFLLGRSIQ 59 (125)
T ss_pred heecCCCCCcchHHHHHHHHHHHHHHHHHHHHhH
Confidence 3344456788999977776666666655554333
No 150
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=72.64 E-value=7.6 Score=29.17 Aligned_cols=6 Identities=33% Similarity=0.783 Sum_probs=2.3
Q ss_pred HHHHHH
Q 037839 27 VSVGIL 32 (177)
Q Consensus 27 i~l~il 32 (177)
|+++++
T Consensus 84 vi~~Vi 89 (179)
T PF13908_consen 84 VICGVI 89 (179)
T ss_pred hhhHHH
Confidence 333333
No 151
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=71.80 E-value=2.2 Score=33.20 Aligned_cols=42 Identities=24% Similarity=0.676 Sum_probs=33.5
Q ss_pred cccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCcCC
Q 037839 109 ATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVC 153 (177)
Q Consensus 109 ~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~C 153 (177)
...|.+|.+-.-.+ ++.- .||-.+|..|+..++++...||.|
T Consensus 181 lk~Cn~Ch~LvIqg--~rCg-~c~i~~h~~c~qty~q~~~~cphc 222 (235)
T KOG4718|consen 181 LKNCNLCHCLVIQG--IRCG-SCNIQYHRGCIQTYLQRRDICPHC 222 (235)
T ss_pred HHHHhHhHHHhhee--eccC-cccchhhhHHHHHHhcccCcCCch
Confidence 45699998876655 2333 388889999999999998999999
No 152
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=71.74 E-value=2.7 Score=22.53 Aligned_cols=21 Identities=24% Similarity=0.583 Sum_probs=13.7
Q ss_pred CCCCcccHhhHHHHHhcCCCCcCCCCC
Q 037839 130 DCSHLFHVKCVDPWLRLHPTCPVCRTS 156 (177)
Q Consensus 130 ~C~H~fH~~Ci~~Wl~~~~~CP~CR~~ 156 (177)
.|||++-..- ....||+|.++
T Consensus 6 ~CGy~y~~~~------~~~~CP~Cg~~ 26 (33)
T cd00350 6 VCGYIYDGEE------APWVCPVCGAP 26 (33)
T ss_pred CCCCEECCCc------CCCcCcCCCCc
Confidence 3888764433 34589999763
No 153
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=70.82 E-value=5.1 Score=32.65 Aligned_cols=29 Identities=17% Similarity=0.399 Sum_probs=20.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHhhccCcch
Q 037839 23 YGIGVSVGILILITTITLASYFCTRGQQQ 51 (177)
Q Consensus 23 ~~i~i~l~il~li~~i~l~~~~~~r~~~~ 51 (177)
+++++.+|+++++.++.+++.+.+|++..
T Consensus 232 IslAiALG~v~ll~l~Gii~~~~~r~~~~ 260 (281)
T PF12768_consen 232 ISLAIALGTVFLLVLIGIILAYIRRRRQG 260 (281)
T ss_pred EehHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 55677778777777777777777666443
No 154
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=70.47 E-value=5 Score=33.33 Aligned_cols=46 Identities=24% Similarity=0.483 Sum_probs=33.2
Q ss_pred cccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCcCCCC
Q 037839 109 ATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRT 155 (177)
Q Consensus 109 ~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~ 155 (177)
...|-.|.++.......+.-. |.|.||.+|=.---..-..||-|..
T Consensus 330 ~~~Cf~C~~~~~~~~~y~C~~-Ck~~FCldCDv~iHesLh~CpgCeh 375 (378)
T KOG2807|consen 330 SRFCFACQGELLSSGRYRCES-CKNVFCLDCDVFIHESLHNCPGCEH 375 (378)
T ss_pred CcceeeeccccCCCCcEEchh-ccceeeccchHHHHhhhhcCCCcCC
Confidence 345999988877665555554 9999999996543344567999963
No 155
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=69.19 E-value=2.4 Score=36.11 Aligned_cols=44 Identities=23% Similarity=0.420 Sum_probs=29.9
Q ss_pred cccCccccccccCCC--ceeecCCCCCcccHhhHHHHHhcCCCCcCC
Q 037839 109 ATCCSICLADYRSSD--MLRLLPDCSHLFHVKCVDPWLRLHPTCPVC 153 (177)
Q Consensus 109 ~~~C~ICl~~f~~~~--~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~C 153 (177)
-..|+.|.-.++... ....-. |||-|++.|...|...+..|..|
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~Cr-C~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTCR-CGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred cCcCcccceeeeecCCcceEEee-ccccchhhcCcchhhCCccccCc
Confidence 346887776655433 222333 99999999999998776666443
No 156
>PRK14750 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=69.06 E-value=9.8 Score=19.79 Aligned_cols=21 Identities=14% Similarity=0.407 Sum_probs=11.6
Q ss_pred chhhHHHHHHHHHHHHHHHHH
Q 037839 23 YGIGVSVGILILITTITLASY 43 (177)
Q Consensus 23 ~~i~i~l~il~li~~i~l~~~ 43 (177)
|+++++.|+++++.++....|
T Consensus 1 Ms~~vi~g~llv~lLl~YLvY 21 (29)
T PRK14750 1 MNFSIVCGALLVLLLLGYLVY 21 (29)
T ss_pred CcHHHHHHHHHHHHHHHHHHH
Confidence 345666666666555444444
No 157
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=68.60 E-value=4.3 Score=27.79 Aligned_cols=17 Identities=12% Similarity=0.366 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHh
Q 037839 28 SVGILILITTITLASYF 44 (177)
Q Consensus 28 ~l~il~li~~i~l~~~~ 44 (177)
++++++++++++++.||
T Consensus 68 lls~v~IlVily~IyYF 84 (101)
T PF06024_consen 68 LLSFVCILVILYAIYYF 84 (101)
T ss_pred HHHHHHHHHHHhhheEE
Confidence 33333333333344343
No 158
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=68.39 E-value=2.9 Score=23.00 Aligned_cols=25 Identities=36% Similarity=0.813 Sum_probs=15.6
Q ss_pred cCccccccccCCCc--------eeecCCCCCccc
Q 037839 111 CCSICLADYRSSDM--------LRLLPDCSHLFH 136 (177)
Q Consensus 111 ~C~ICl~~f~~~~~--------v~~l~~C~H~fH 136 (177)
.|+=|...|..+|. ++-. .|||+|+
T Consensus 4 ~Cp~C~~~y~i~d~~ip~~g~~v~C~-~C~~~f~ 36 (36)
T PF13717_consen 4 TCPNCQAKYEIDDEKIPPKGRKVRCS-KCGHVFF 36 (36)
T ss_pred ECCCCCCEEeCCHHHCCCCCcEEECC-CCCCEeC
Confidence 47777777765442 4333 3888774
No 159
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=67.79 E-value=2.6 Score=23.87 Aligned_cols=17 Identities=18% Similarity=0.241 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHhhccCc
Q 037839 33 ILITTITLASYFCTRGQ 49 (177)
Q Consensus 33 ~li~~i~l~~~~~~r~~ 49 (177)
+.+..+.++..+..|++
T Consensus 17 Vglv~i~iva~~iYRKw 33 (43)
T PF08114_consen 17 VGLVGIGIVALFIYRKW 33 (43)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 161
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=67.64 E-value=4.8 Score=23.95 Aligned_cols=35 Identities=17% Similarity=0.442 Sum_probs=24.0
Q ss_pred ccCccccccccCCCceeecCCCCCcccHhhHHHHH
Q 037839 110 TCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWL 144 (177)
Q Consensus 110 ~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl 144 (177)
..|.+|-..|.....-..-..||++|+..|.....
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~ 37 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRI 37 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCee
Confidence 35889988887543222223499999999987654
No 162
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=67.61 E-value=4.8 Score=33.29 Aligned_cols=44 Identities=16% Similarity=0.348 Sum_probs=32.6
Q ss_pred cccCccccccccCCCceeecCCCCCcccHhhHHHHHhcC---CCCcCC
Q 037839 109 ATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLH---PTCPVC 153 (177)
Q Consensus 109 ~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~---~~CP~C 153 (177)
...|++--+.-.....-.++. |||+.-..-++..-++. ..||+|
T Consensus 336 ~FiCPVlKe~~t~ENpP~ml~-CgHVIskeal~~LS~nG~~~FKCPYC 382 (396)
T COG5109 336 LFICPVLKELCTDENPPVMLE-CGHVISKEALSVLSQNGVLSFKCPYC 382 (396)
T ss_pred eeeccccHhhhcccCCCeeee-ccceeeHHHHHHHhhcCcEEeeCCCC
Confidence 456887766666656667887 99999988888855442 369999
No 163
>PF07213 DAP10: DAP10 membrane protein; InterPro: IPR009861 This family consists of several mammalian DAP10 membrane proteins. In activated mouse natural killer (NK) cells, the NKG2D receptor associates with two intracellular adaptors, DAP10 and DAP12, which trigger phosphatidyl inositol 3 kinase (PI3K) and Syk family protein tyrosine kinases, respectively. It has been suggested that the DAP10-PI3K pathway is sufficient to initiate NKG2D-mediated killing of target cells [].
Probab=67.58 E-value=15 Score=24.05 Aligned_cols=27 Identities=26% Similarity=0.589 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhccCcchh
Q 037839 26 GVSVGILILITTITLASYFCTRGQQQQ 52 (177)
Q Consensus 26 ~i~l~il~li~~i~l~~~~~~r~~~~~ 52 (177)
+++++=+++-++|..+.|+|-|.+++.
T Consensus 38 GiV~~D~vlTLLIv~~vy~car~r~r~ 64 (79)
T PF07213_consen 38 GIVAADAVLTLLIVLVVYYCARPRRRP 64 (79)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccCC
Confidence 566666677778888888888876555
No 164
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=66.43 E-value=3.8 Score=22.61 Aligned_cols=25 Identities=32% Similarity=0.824 Sum_probs=15.3
Q ss_pred cCccccccccCCC--------ceeecCCCCCccc
Q 037839 111 CCSICLADYRSSD--------MLRLLPDCSHLFH 136 (177)
Q Consensus 111 ~C~ICl~~f~~~~--------~v~~l~~C~H~fH 136 (177)
.|+=|-..|..++ .++-- .|+|+|.
T Consensus 4 ~CP~C~~~f~v~~~~l~~~~~~vrC~-~C~~~f~ 36 (37)
T PF13719_consen 4 TCPNCQTRFRVPDDKLPAGGRKVRCP-KCGHVFR 36 (37)
T ss_pred ECCCCCceEEcCHHHcccCCcEEECC-CCCcEee
Confidence 4777777776544 33333 3778774
No 165
>PTZ00046 rifin; Provisional
Probab=65.97 E-value=3.6 Score=34.60 Aligned_cols=37 Identities=14% Similarity=0.083 Sum_probs=28.5
Q ss_pred CCCCCccchhhHHHHHHHHHHHHHHHHHhhccCcchh
Q 037839 16 SNIGGFGYGIGVSVGILILITTITLASYFCTRGQQQQ 52 (177)
Q Consensus 16 ~~~~~~~~~i~i~l~il~li~~i~l~~~~~~r~~~~~ 52 (177)
+....+.++|+.++.|+++++.|+++++|.|++....
T Consensus 312 ~~~taIiaSiiAIvVIVLIMvIIYLILRYRRKKKMkK 348 (358)
T PTZ00046 312 ILQTAIIASIVAIVVIVLIMVIIYLILRYRRKKKMKK 348 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHH
Confidence 4445788888877778788888888888888776655
No 166
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=65.83 E-value=7.5 Score=22.42 Aligned_cols=30 Identities=17% Similarity=0.284 Sum_probs=14.4
Q ss_pred CccchhhHHHHHHHHHHHHHHHHHhhccCc
Q 037839 20 GFGYGIGVSVGILILITTITLASYFCTRGQ 49 (177)
Q Consensus 20 ~~~~~i~i~l~il~li~~i~l~~~~~~r~~ 49 (177)
+.+..+..+.++.++++.+.++....++++
T Consensus 3 gy~~yVW~sYg~t~l~l~~li~~~~~~~r~ 32 (45)
T TIGR03141 3 GYAFYVWLAYGITALVLAGLILWSLLDRRR 32 (45)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555444444444444433
No 167
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=65.73 E-value=3.9 Score=34.32 Aligned_cols=37 Identities=11% Similarity=0.078 Sum_probs=28.5
Q ss_pred CCCCCccchhhHHHHHHHHHHHHHHHHHhhccCcchh
Q 037839 16 SNIGGFGYGIGVSVGILILITTITLASYFCTRGQQQQ 52 (177)
Q Consensus 16 ~~~~~~~~~i~i~l~il~li~~i~l~~~~~~r~~~~~ 52 (177)
+....+.++++.++.|+++++.|+++++|.|++....
T Consensus 307 ~~~t~IiaSiIAIvvIVLIMvIIYLILRYRRKKKMkK 343 (353)
T TIGR01477 307 NYYTPIIASIIAILIIVLIMVIIYLILRYRRKKKMKK 343 (353)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHH
Confidence 3445788888877778788888888888888776654
No 168
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.52 E-value=5.2 Score=31.98 Aligned_cols=33 Identities=24% Similarity=0.528 Sum_probs=27.7
Q ss_pred CcccCccccccccCCCceeecCCCCCcccHhhHHHHH
Q 037839 108 TATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWL 144 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl 144 (177)
+...|+.||..+.++ .+.+ =||+|+.+||..++
T Consensus 42 ~FdcCsLtLqPc~dP---vit~-~GylfdrEaILe~i 74 (303)
T KOG3039|consen 42 PFDCCSLTLQPCRDP---VITP-DGYLFDREAILEYI 74 (303)
T ss_pred CcceeeeecccccCC---ccCC-CCeeeeHHHHHHHH
Confidence 466799999999887 4555 79999999998886
No 169
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=65.21 E-value=5.8 Score=30.98 Aligned_cols=26 Identities=19% Similarity=0.241 Sum_probs=16.8
Q ss_pred CCccchhhHHHHHHHHHHHHHHHHHh
Q 037839 19 GGFGYGIGVSVGILILITTITLASYF 44 (177)
Q Consensus 19 ~~~~~~i~i~l~il~li~~i~l~~~~ 44 (177)
.++.+.|+++.|++.+|++|+++.+.
T Consensus 35 d~~~I~iaiVAG~~tVILVI~i~v~v 60 (221)
T PF08374_consen 35 DYVKIMIAIVAGIMTVILVIFIVVLV 60 (221)
T ss_pred cceeeeeeeecchhhhHHHHHHHHHH
Confidence 46677777777777666665555443
No 170
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=64.98 E-value=10 Score=25.26 Aligned_cols=31 Identities=10% Similarity=0.247 Sum_probs=16.0
Q ss_pred cchhhHHHHHHHHH-HHHHHHHHhhccCcchh
Q 037839 22 GYGIGVSVGILILI-TTITLASYFCTRGQQQQ 52 (177)
Q Consensus 22 ~~~i~i~l~il~li-~~i~l~~~~~~r~~~~~ 52 (177)
+..+.+.++++.++ +++++.++.|.+.|++.
T Consensus 30 ~~~Lgm~~lvI~~iFil~VilwfvCC~kRkrs 61 (94)
T PF05393_consen 30 WPNLGMWFLVICGIFILLVILWFVCCKKRKRS 61 (94)
T ss_pred CCccchhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 45666655555444 34444445555555554
No 171
>PF15102 TMEM154: TMEM154 protein family
Probab=64.62 E-value=7.3 Score=28.56 Aligned_cols=13 Identities=31% Similarity=0.843 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHh
Q 037839 32 LILITTITLASYF 44 (177)
Q Consensus 32 l~li~~i~l~~~~ 44 (177)
+++++++++++++
T Consensus 70 lLLl~vV~lv~~~ 82 (146)
T PF15102_consen 70 LLLLSVVCLVIYY 82 (146)
T ss_pred HHHHHHHHheeEE
Confidence 3333333333333
No 172
>PRK00523 hypothetical protein; Provisional
Probab=64.34 E-value=9.3 Score=24.53 Aligned_cols=30 Identities=17% Similarity=0.368 Sum_probs=16.7
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhhccCcch
Q 037839 22 GYGIGVSVGILILITTITLASYFCTRGQQQ 51 (177)
Q Consensus 22 ~~~i~i~l~il~li~~i~l~~~~~~r~~~~ 51 (177)
...+.++++++.++.-++..||+-++....
T Consensus 3 ~~~l~I~l~i~~li~G~~~Gffiark~~~k 32 (72)
T PRK00523 3 AIGLALGLGIPLLIVGGIIGYFVSKKMFKK 32 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666555556655554433
No 173
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=64.24 E-value=2.8 Score=35.61 Aligned_cols=66 Identities=23% Similarity=0.380 Sum_probs=8.4
Q ss_pred HHHhhCCCccchhhhhccCCCCcccCccccccccCCC-----------ceeecCCCCCcccHhhHHHHHhc------CCC
Q 037839 87 STIKSYPKLPYSEARLQKKDSTATCCSICLADYRSSD-----------MLRLLPDCSHLFHVKCVDPWLRL------HPT 149 (177)
Q Consensus 87 ~~~~~~p~~~~~~~~~~~~~~~~~~C~ICl~~f~~~~-----------~v~~l~~C~H~fH~~Ci~~Wl~~------~~~ 149 (177)
+-+...|+..--....+..+..-..|++=|..+.-+. .-.-+. |||++- ...|-.. ...
T Consensus 255 ~gL~~~Pt~~~Le~~~~~lNa~rpQCPVglnTL~fp~~~~~~~~~~~qP~VYl~-CGHVhG---~h~Wg~~~~~~~~~r~ 330 (416)
T PF04710_consen 255 EGLAHSPTKKHLEALRQELNAGRPQCPVGLNTLVFPSKSRKDVPDERQPWVYLN-CGHVHG---YHNWGQDSDRDPRSRT 330 (416)
T ss_dssp HHHHHS-CCHHHHHHCHHSS------------------------------------------------------------
T ss_pred hhhhcCCcHHHHHHHHHHHhhcCCCCCcCCCccccccccccccccccCceeecc-ccceee---eccccccccccccccc
Confidence 3444455554333334444555667888776664322 122343 999853 2366532 457
Q ss_pred CcCCCCC
Q 037839 150 CPVCRTS 156 (177)
Q Consensus 150 CP~CR~~ 156 (177)
||+||..
T Consensus 331 CPlCr~~ 337 (416)
T PF04710_consen 331 CPLCRQV 337 (416)
T ss_dssp -------
T ss_pred CCCcccc
Confidence 9999973
No 174
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=64.04 E-value=13 Score=24.03 Aligned_cols=24 Identities=8% Similarity=0.184 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHhhccCcc
Q 037839 27 VSVGILILITTITLASYFCTRGQQ 50 (177)
Q Consensus 27 i~l~il~li~~i~l~~~~~~r~~~ 50 (177)
-++.+++++..+++++.|..+++.
T Consensus 9 Pliif~ifVap~wl~lHY~~k~~~ 32 (75)
T TIGR02976 9 PLIIFVIFVAPLWLILHYRSKRKT 32 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcc
Confidence 333344444555555555555443
No 175
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=63.69 E-value=4.5 Score=20.60 Aligned_cols=22 Identities=32% Similarity=0.674 Sum_probs=10.3
Q ss_pred CccccccccCCCceeecCCCCCcc
Q 037839 112 CSICLADYRSSDMLRLLPDCSHLF 135 (177)
Q Consensus 112 C~ICl~~f~~~~~v~~l~~C~H~f 135 (177)
|+-|-...... ...-|.|||.|
T Consensus 3 CP~C~~~V~~~--~~~Cp~CG~~F 24 (26)
T PF10571_consen 3 CPECGAEVPES--AKFCPHCGYDF 24 (26)
T ss_pred CCCCcCCchhh--cCcCCCCCCCC
Confidence 55555554322 22333466665
No 176
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=63.54 E-value=4.7 Score=32.50 Aligned_cols=48 Identities=29% Similarity=0.641 Sum_probs=34.6
Q ss_pred ccCccccccccCCCceeec---CCCCCcccHhhHHHHHh-c--------CCCCcCCCCCC
Q 037839 110 TCCSICLADYRSSDMLRLL---PDCSHLFHVKCVDPWLR-L--------HPTCPVCRTSP 157 (177)
Q Consensus 110 ~~C~ICl~~f~~~~~v~~l---~~C~H~fH~~Ci~~Wl~-~--------~~~CP~CR~~~ 157 (177)
.+|-+|.+++.+.+..+.. +.|+-++|..|+..-+. . ...||.|++-+
T Consensus 183 ~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~ 242 (276)
T KOG3005|consen 183 VECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFL 242 (276)
T ss_pred hhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhcee
Confidence 5799999999655544332 25888999999988432 2 23799998844
No 177
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=63.48 E-value=17 Score=22.45 Aligned_cols=25 Identities=16% Similarity=0.260 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHhhccCcchh
Q 037839 28 SVGILILITTITLASYFCTRGQQQQ 52 (177)
Q Consensus 28 ~l~il~li~~i~l~~~~~~r~~~~~ 52 (177)
.++++++.++++.++++..|..++.
T Consensus 12 a~~t~~~~l~fiavi~~ayr~~~K~ 36 (60)
T COG4736 12 AWGTIAFTLFFIAVIYFAYRPGKKG 36 (60)
T ss_pred HHHHHHHHHHHHHHHHHHhcccchh
Confidence 3344444444444445444444443
No 178
>PF13209 DUF4017: Protein of unknown function (DUF4017)
Probab=63.46 E-value=7.9 Score=23.37 Aligned_cols=37 Identities=22% Similarity=0.248 Sum_probs=27.2
Q ss_pred CCCCCCCCCccchhhHHHHHHHHHHHHHHHHHhhccC
Q 037839 12 FLGSSNIGGFGYGIGVSVGILILITTITLASYFCTRG 48 (177)
Q Consensus 12 ~~~~~~~~~~~~~i~i~l~il~li~~i~l~~~~~~r~ 48 (177)
.+++-|.-||+..++-.-++-++++..++.||.-+++
T Consensus 23 aSegYN~vgWKlfvGQ~YAiPif~i~aiitFyinkk~ 59 (60)
T PF13209_consen 23 ASEGYNTVGWKLFVGQAYAIPIFIITAIITFYINKKK 59 (60)
T ss_pred cccCccccchhheecchhHhHHHHHHHHHhheecccc
Confidence 3455677789988888888888877777777765543
No 179
>PHA02844 putative transmembrane protein; Provisional
Probab=62.91 E-value=12 Score=24.09 Aligned_cols=11 Identities=9% Similarity=-0.206 Sum_probs=4.4
Q ss_pred CCCCCCccchh
Q 037839 15 SSNIGGFGYGI 25 (177)
Q Consensus 15 ~~~~~~~~~~i 25 (177)
+++-.++.+.|
T Consensus 42 ~~~~~~~~~~i 52 (75)
T PHA02844 42 NVCSSSTKIWI 52 (75)
T ss_pred ccCChhHHHHH
Confidence 33333444444
No 180
>PF13190 PDGLE: PDGLE domain
Probab=62.19 E-value=14 Score=24.58 Aligned_cols=35 Identities=11% Similarity=0.019 Sum_probs=24.2
Q ss_pred CCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHHH
Q 037839 9 SDGFLGSSNIGGFGYGIGVSVGILILITTITLASY 43 (177)
Q Consensus 9 ~~~~~~~~~~~~~~~~i~i~l~il~li~~i~l~~~ 43 (177)
-||..++-+...++|.+..++|+++++.+.+.+.+
T Consensus 53 pDY~i~g~~~~~~g~~lsgivGv~~~~~l~~~i~~ 87 (88)
T PF13190_consen 53 PDYTIPGLGNQALGTILSGIVGVALTLALAYGIGK 87 (88)
T ss_pred CCcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHh
Confidence 36666544445788999888888888776665543
No 181
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=61.63 E-value=1.9 Score=30.18 Aligned_cols=16 Identities=13% Similarity=0.565 Sum_probs=0.0
Q ss_pred HHHHHHHhhccCcchh
Q 037839 37 TITLASYFCTRGQQQQ 52 (177)
Q Consensus 37 ~i~l~~~~~~r~~~~~ 52 (177)
++++-.+||+|+....
T Consensus 39 LLliGCWYckRRSGYk 54 (118)
T PF14991_consen 39 LLLIGCWYCKRRSGYK 54 (118)
T ss_dssp ----------------
T ss_pred HHHHhheeeeecchhh
Confidence 3344456777776655
No 182
>PF06676 DUF1178: Protein of unknown function (DUF1178); InterPro: IPR009562 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown.
Probab=61.38 E-value=2.4 Score=31.19 Aligned_cols=28 Identities=32% Similarity=0.820 Sum_probs=20.2
Q ss_pred CCCcccHhhHHHHHhcC-----------CCCcCCCCCCCCCCCC
Q 037839 131 CSHLFHVKCVDPWLRLH-----------PTCPVCRTSPLPTPLS 163 (177)
Q Consensus 131 C~H~fH~~Ci~~Wl~~~-----------~~CP~CR~~~~~~~~~ 163 (177)
+||.| +.||.+. -+||+|-..-+.+.++
T Consensus 10 ~gH~F-----EgWF~ss~~fd~Q~~~glv~CP~Cgs~~V~K~lm 48 (148)
T PF06676_consen 10 NGHEF-----EGWFRSSAAFDRQQARGLVSCPVCGSTEVSKALM 48 (148)
T ss_pred CCCcc-----ceecCCHHHHHHHHHcCCccCCCCCCCeEeeecC
Confidence 57876 6898652 2799998877666555
No 183
>PF07406 NICE-3: NICE-3 protein; InterPro: IPR010876 This family consists of several eukaryotic NICE-3 and related proteins. The gene coding for NICE-3 is part of the epidermal differentiation complex (EDC), which comprises a large number of genes that are of crucial importance for the maturation of the human epidermis []. The function of NICE-3 is unknown.
Probab=61.30 E-value=8.7 Score=29.36 Aligned_cols=31 Identities=16% Similarity=0.250 Sum_probs=20.9
Q ss_pred CCCCCCCCccchhhHHHHHHHHHHHHHHHHH
Q 037839 13 LGSSNIGGFGYGIGVSVGILILITTITLASY 43 (177)
Q Consensus 13 ~~~~~~~~~~~~i~i~l~il~li~~i~l~~~ 43 (177)
++.+...|+...+++++|+++++++++++..
T Consensus 3 ~~~~~lsGv~vvlv~a~g~l~~vllfIfaKR 33 (186)
T PF07406_consen 3 SNSEWLSGVNVVLVIAYGSLVFVLLFIFAKR 33 (186)
T ss_pred cccccccceeeehhhHHHHHHHHHHHHHHHH
Confidence 3444566777777888888777766666543
No 184
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=61.27 E-value=2.7 Score=35.71 Aligned_cols=52 Identities=23% Similarity=0.531 Sum_probs=0.0
Q ss_pred cccCccccccccC----------------CCceeecCCCCCcccHhhHHHHHhc---------CCCCcCCCCCCCCCC
Q 037839 109 ATCCSICLADYRS----------------SDMLRLLPDCSHLFHVKCVDPWLRL---------HPTCPVCRTSPLPTP 161 (177)
Q Consensus 109 ~~~C~ICl~~f~~----------------~~~v~~l~~C~H~fH~~Ci~~Wl~~---------~~~CP~CR~~~~~~~ 161 (177)
...|++|+..-.. +-....-| |||+--.....-|-+- +..||.|-.+|....
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~P-CGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g~~ 404 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNP-CGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDGEQ 404 (416)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecc-cccccchhhhhhhhcCCCCCCcccccccCCcccCcccCCC
Confidence 6789999965320 11344666 9999888888888643 247999988887543
No 185
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=60.64 E-value=5.9 Score=26.87 Aligned_cols=6 Identities=33% Similarity=0.667 Sum_probs=2.2
Q ss_pred HHhhcc
Q 037839 42 SYFCTR 47 (177)
Q Consensus 42 ~~~~~r 47 (177)
++|+.|
T Consensus 88 w~f~~r 93 (96)
T PTZ00382 88 WWFVCR 93 (96)
T ss_pred heeEEe
Confidence 333333
No 186
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=60.57 E-value=7.8 Score=22.41 Aligned_cols=22 Identities=23% Similarity=0.451 Sum_probs=9.6
Q ss_pred CccchhhHHHHHHHHHHHHHHH
Q 037839 20 GFGYGIGVSVGILILITTITLA 41 (177)
Q Consensus 20 ~~~~~i~i~l~il~li~~i~l~ 41 (177)
+.++.+..+.++.++++...++
T Consensus 2 gy~~yVW~sYg~t~~~l~~l~~ 23 (46)
T PF04995_consen 2 GYGFYVWSSYGVTALVLAGLIV 23 (46)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433333
No 187
>PHA02849 putative transmembrane protein; Provisional
Probab=60.30 E-value=17 Score=23.67 Aligned_cols=22 Identities=14% Similarity=0.010 Sum_probs=8.5
Q ss_pred CccchhhHHHHHHHHHHHHHHH
Q 037839 20 GFGYGIGVSVGILILITTITLA 41 (177)
Q Consensus 20 ~~~~~i~i~l~il~li~~i~l~ 41 (177)
+.|..+++.+.++++..+++++
T Consensus 13 ~~g~v~vi~v~v~vI~i~~flL 34 (82)
T PHA02849 13 DAGAVTVILVFVLVISFLAFML 34 (82)
T ss_pred ccchHHHHHHHHHHHHHHHHHH
Confidence 3444444444333333333333
No 188
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=59.44 E-value=3.6 Score=34.03 Aligned_cols=48 Identities=25% Similarity=0.595 Sum_probs=29.7
Q ss_pred hccCCCCcccCccccccccCCCc-----------eeecCCCCCc--ccHhhHHHHHhc------CCCCcCCCC
Q 037839 102 LQKKDSTATCCSICLADYRSSDM-----------LRLLPDCSHL--FHVKCVDPWLRL------HPTCPVCRT 155 (177)
Q Consensus 102 ~~~~~~~~~~C~ICl~~f~~~~~-----------v~~l~~C~H~--fH~~Ci~~Wl~~------~~~CP~CR~ 155 (177)
.+..+..-..|++=|..+.-+.. -.-+. |||+ +| .|=.+ ...||+||.
T Consensus 283 ~~~iNA~RPQCPVglnTL~~P~~~~~~~~~~~QP~vYl~-CGHV~G~H-----~WG~~e~~g~~~r~CPmC~~ 349 (429)
T KOG3842|consen 283 RQEINAARPQCPVGLNTLAFPSKRRKRVVDEKQPWVYLN-CGHVHGYH-----NWGVRENTGQRERECPMCRV 349 (429)
T ss_pred HHHHhccCCCCCcccceeecccccccccccccCCeEEEe-cccccccc-----ccccccccCcccCcCCeeee
Confidence 34445556679988887754432 12344 9988 55 56422 347999986
No 189
>PF15050 SCIMP: SCIMP protein
Probab=59.22 E-value=9.1 Score=27.09 Aligned_cols=18 Identities=22% Similarity=0.418 Sum_probs=7.1
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 037839 26 GVSVGILILITTITLASY 43 (177)
Q Consensus 26 ~i~l~il~li~~i~l~~~ 43 (177)
++.++|+++-+.+.+++|
T Consensus 11 iLAVaII~vS~~lglIly 28 (133)
T PF15050_consen 11 ILAVAIILVSVVLGLILY 28 (133)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444333333344444
No 190
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=58.26 E-value=6.6 Score=29.07 Aligned_cols=46 Identities=26% Similarity=0.416 Sum_probs=31.9
Q ss_pred ccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCCCCC
Q 037839 113 SICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPLPTP 161 (177)
Q Consensus 113 ~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~~~~ 161 (177)
.||+..-...+..-.-|.=.+-||..|-..-+. .||.|..++...-
T Consensus 8 qiC~NGH~~t~~~~~~p~~~~~fC~kCG~~tI~---~Cp~C~~~IrG~y 53 (158)
T PF10083_consen 8 QICLNGHVITDSYDKNPELREKFCSKCGAKTIT---SCPNCSTPIRGDY 53 (158)
T ss_pred HHccCccccccccccCchHHHHHHHHhhHHHHH---HCcCCCCCCCCce
Confidence 367776655554444443456799999988765 4999999987653
No 191
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=56.80 E-value=16 Score=23.56 Aligned_cols=23 Identities=26% Similarity=0.569 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHhhccCcc
Q 037839 27 VSVGILILITTITLASYFCTRGQQ 50 (177)
Q Consensus 27 i~l~il~li~~i~l~~~~~~r~~~ 50 (177)
+++|+++++.+ ++++.++.|+..
T Consensus 6 ~~~g~~~ll~~-v~~~~~~~rr~~ 28 (75)
T PF14575_consen 6 IIVGVLLLLVL-VIIVIVCFRRCK 28 (75)
T ss_dssp HHHHHHHHHHH-HHHHHCCCTT--
T ss_pred HHHHHHHHHHh-heeEEEEEeeEc
Confidence 34444333333 333444444443
No 192
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=56.57 E-value=14 Score=23.42 Aligned_cols=30 Identities=27% Similarity=0.372 Sum_probs=18.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHhhccCcchh
Q 037839 23 YGIGVSVGILILITTITLASYFCTRGQQQQ 52 (177)
Q Consensus 23 ~~i~i~l~il~li~~i~l~~~~~~r~~~~~ 52 (177)
..|+++.++++.++.++.-+||..|..++.
T Consensus 34 ~aIGvi~gi~~~~lt~ltN~YFK~k~drr~ 63 (68)
T PF04971_consen 34 AAIGVIGGIFFGLLTYLTNLYFKIKEDRRK 63 (68)
T ss_pred hhHHHHHHHHHHHHHHHhHhhhhhhHhhhH
Confidence 456667767666666666677666554443
No 193
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=55.98 E-value=42 Score=22.15 Aligned_cols=17 Identities=18% Similarity=0.331 Sum_probs=8.9
Q ss_pred CCCCCccchhhHHHHHH
Q 037839 16 SNIGGFGYGIGVSVGIL 32 (177)
Q Consensus 16 ~~~~~~~~~i~i~l~il 32 (177)
.++.++--...+.+.+.
T Consensus 17 ~~~~~l~pn~lMtILiv 33 (85)
T PF10717_consen 17 NNLNGLNPNTLMTILIV 33 (85)
T ss_pred ccccccChhHHHHHHHH
Confidence 35666665554444433
No 194
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=55.90 E-value=11 Score=25.70 Aligned_cols=15 Identities=20% Similarity=0.124 Sum_probs=6.7
Q ss_pred HHHHHHHHHHhhccC
Q 037839 34 LITTITLASYFCTRG 48 (177)
Q Consensus 34 li~~i~l~~~~~~r~ 48 (177)
.+++++.+|||.-.|
T Consensus 14 ~~vl~~~ifyFli~R 28 (97)
T COG1862 14 PLVLIFAIFYFLIIR 28 (97)
T ss_pred HHHHHHHHHHHhhcC
Confidence 334444555553333
No 195
>KOG3637 consensus Vitronectin receptor, alpha subunit [Extracellular structures]
Probab=55.75 E-value=16 Score=35.16 Aligned_cols=32 Identities=22% Similarity=0.221 Sum_probs=21.8
Q ss_pred CCCccchhhHHHHHHHHHHHHHHHHH--hhccCc
Q 037839 18 IGGFGYGIGVSVGILILITTITLASY--FCTRGQ 49 (177)
Q Consensus 18 ~~~~~~~i~i~l~il~li~~i~l~~~--~~~r~~ 49 (177)
++-|.|.++++.|+|+|.+++++++. |++|.+
T Consensus 976 vp~wiIi~svl~GLLlL~llv~~LwK~GFFKR~r 1009 (1030)
T KOG3637|consen 976 VPLWIIILSVLGGLLLLALLVLLLWKCGFFKRNR 1009 (1030)
T ss_pred cceeeehHHHHHHHHHHHHHHHHHHhcCccccCC
Confidence 66677777888888888776666554 444444
No 196
>PRK14748 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=55.62 E-value=24 Score=18.37 Aligned_cols=19 Identities=21% Similarity=0.422 Sum_probs=9.7
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 037839 24 GIGVSVGILILITTITLAS 42 (177)
Q Consensus 24 ~i~i~l~il~li~~i~l~~ 42 (177)
++.+++|++++++++....
T Consensus 2 s~~vi~G~ilv~lLlgYLv 20 (29)
T PRK14748 2 SAGVITGVLLVFLLLGYLV 20 (29)
T ss_pred cHHHHHHHHHHHHHHHHHH
Confidence 4555666655555443333
No 197
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=54.83 E-value=23 Score=24.11 Aligned_cols=36 Identities=17% Similarity=0.399 Sum_probs=19.4
Q ss_pred CCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHhhccC
Q 037839 6 VKASDGFLGSSNIGGFGYGIGVSVGILILITTITLASYFCTRG 48 (177)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~i~i~l~il~li~~i~l~~~~~~r~ 48 (177)
+||++++++ |.+ |.|.+..+++.+-++..++||.|+
T Consensus 9 ~KPsGsL~P------WeI-fLItLasVvvavGl~aGLfFcvR~ 44 (106)
T PF14654_consen 9 VKPSGSLKP------WEI-FLITLASVVVAVGLFAGLFFCVRN 44 (106)
T ss_pred cccCCCccc------hHH-HHHHHHHHHHHHHHHHHHHHHhhh
Confidence 466666664 233 334444445545555556666655
No 198
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=54.73 E-value=13 Score=28.78 Aligned_cols=25 Identities=24% Similarity=0.506 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHhhccCcch
Q 037839 27 VSVGILILITTITLASYFCTRGQQQ 51 (177)
Q Consensus 27 i~l~il~li~~i~l~~~~~~r~~~~ 51 (177)
+++|.+++++++++..|+|..||..
T Consensus 106 v~~g~~lLla~~~~~~Y~~~~Rrs~ 130 (202)
T PF06365_consen 106 VTSGSFLLLAILLGAGYCCHQRRSW 130 (202)
T ss_pred HHhhHHHHHHHHHHHHHHhhhhccC
Confidence 3344334444445555666655554
No 199
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=54.63 E-value=4.1 Score=35.34 Aligned_cols=30 Identities=23% Similarity=0.462 Sum_probs=0.0
Q ss_pred CccchhhHHHHHHHHHHHHHHHHHhhccCc
Q 037839 20 GFGYGIGVSVGILILITTITLASYFCTRGQ 49 (177)
Q Consensus 20 ~~~~~i~i~l~il~li~~i~l~~~~~~r~~ 49 (177)
.....+++++|++++++++++++++|.+++
T Consensus 350 ~~~~~l~vVlgvavlivVv~viv~vc~~~r 379 (439)
T PF02480_consen 350 RGAALLGVVLGVAVLIVVVGVIVWVCLRCR 379 (439)
T ss_dssp ------------------------------
T ss_pred cccchHHHHHHHHHHHHHHHHHhheeeeeh
Confidence 333444445455555555555544444433
No 200
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=54.60 E-value=24 Score=24.14 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=17.4
Q ss_pred CCCccchhhHHHHHHHHHHHHHHHH
Q 037839 18 IGGFGYGIGVSVGILILITTITLAS 42 (177)
Q Consensus 18 ~~~~~~~i~i~l~il~li~~i~l~~ 42 (177)
...|.|.++++++.+++-++|.+++
T Consensus 14 g~sW~~LVGVv~~al~~SlLIalaa 38 (102)
T PF15176_consen 14 GRSWPFLVGVVVTALVTSLLIALAA 38 (102)
T ss_pred CcccHhHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888777766655553
No 201
>PF09680 Tiny_TM_bacill: Protein of unknown function (Tiny_TM_bacill); InterPro: IPR010070 This entry represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=54.56 E-value=16 Score=18.20 Aligned_cols=13 Identities=31% Similarity=0.593 Sum_probs=5.7
Q ss_pred cchhhHHHHHHHH
Q 037839 22 GYGIGVSVGILIL 34 (177)
Q Consensus 22 ~~~i~i~l~il~l 34 (177)
+|.+.+++.++++
T Consensus 5 ~FalivVLFILLi 17 (24)
T PF09680_consen 5 GFALIVVLFILLI 17 (24)
T ss_pred cchhHHHHHHHHH
Confidence 4444444444433
No 202
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=54.53 E-value=4.1 Score=33.34 Aligned_cols=10 Identities=20% Similarity=0.647 Sum_probs=0.0
Q ss_pred HHhhccCcch
Q 037839 42 SYFCTRGQQQ 51 (177)
Q Consensus 42 ~~~~~r~~~~ 51 (177)
+.+|.|+++.
T Consensus 166 a~icyrrkR~ 175 (290)
T PF05454_consen 166 ACICYRRKRK 175 (290)
T ss_dssp ----------
T ss_pred HHHhhhhhhc
Confidence 3344444333
No 203
>PF05715 zf-piccolo: Piccolo Zn-finger; InterPro: IPR008899 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This (predicted) zinc finger is found in the bassoon and piccolo proteins, both of which are components of the presynaptic cytoskeletal matrix (PCM) assembled at the active zone of neurotransmitter release, where Piccolo plays a role in the trafficking of synaptic vesicles (SVs) [, , ]. The Piccolo zinc fingers were found to interact with the dual prenylated rab3A and VAMP2/Synaptobrevin II receptor PRA1. There are eight conserved cysteines in Piccolo-type zinc fingers, suggesting that they coordinates two zinc ligands. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding, 0045202 synapse
Probab=53.78 E-value=10 Score=23.40 Aligned_cols=11 Identities=36% Similarity=0.996 Sum_probs=6.9
Q ss_pred CCCcCCCCCCC
Q 037839 148 PTCPVCRTSPL 158 (177)
Q Consensus 148 ~~CP~CR~~~~ 158 (177)
..||+|+..+.
T Consensus 3 ~~CPlCkt~~n 13 (61)
T PF05715_consen 3 SLCPLCKTTLN 13 (61)
T ss_pred ccCCcccchhh
Confidence 45777776653
No 204
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=53.59 E-value=5.8 Score=26.93 Aligned_cols=7 Identities=43% Similarity=0.439 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 037839 29 VGILILI 35 (177)
Q Consensus 29 l~il~li 35 (177)
++.|+.+
T Consensus 79 v~~lv~~ 85 (96)
T PTZ00382 79 VGGLVGF 85 (96)
T ss_pred HHHHHHH
Confidence 3333333
No 205
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=53.33 E-value=25 Score=22.95 Aligned_cols=59 Identities=19% Similarity=0.346 Sum_probs=20.3
Q ss_pred CcccCccccccccCCC--ceeec-CCCCCcccHhhHHHHHh-cCCCCcCCCCCCCCCCCCCCc
Q 037839 108 TATCCSICLADYRSSD--MLRLL-PDCSHLFHVKCVDPWLR-LHPTCPVCRTSPLPTPLSTPL 166 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~--~v~~l-~~C~H~fH~~Ci~~Wl~-~~~~CP~CR~~~~~~~~~~~~ 166 (177)
....|-||=++..... ++.+. -.|+--.|..|.+-=.+ .++.||.|++++--...++.+
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr~kgsp~V 70 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKRHKGSPRV 70 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B----TT----
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcccccCCCCC
Confidence 4557999988875322 22111 12555578889865443 367899999888655544443
No 206
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=53.10 E-value=16 Score=24.00 Aligned_cols=22 Identities=14% Similarity=0.409 Sum_probs=9.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHhh
Q 037839 24 GIGVSVGILILITTITLASYFC 45 (177)
Q Consensus 24 ~i~i~l~il~li~~i~l~~~~~ 45 (177)
.+.++++++++++++++++++|
T Consensus 67 k~~~i~~~iv~~~~~~i~~~~~ 88 (89)
T PF00957_consen 67 KLYIIIIIIVIIIILIIIIVIC 88 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHhHHhhhhhhhhHHHHHHh
Confidence 3344444444444444444443
No 207
>PLN02189 cellulose synthase
Probab=53.05 E-value=24 Score=33.91 Aligned_cols=60 Identities=20% Similarity=0.353 Sum_probs=37.8
Q ss_pred CcccCccccccccC---CCceeecCCCCCcccHhhHHHHHh-cCCCCcCCCCCCCCCCCCCCcc
Q 037839 108 TATCCSICLADYRS---SDMLRLLPDCSHLFHVKCVDPWLR-LHPTCPVCRTSPLPTPLSTPLA 167 (177)
Q Consensus 108 ~~~~C~ICl~~f~~---~~~v~~l~~C~H~fH~~Ci~~Wl~-~~~~CP~CR~~~~~~~~~~~~~ 167 (177)
....|.||-++... ++.-.....|+--.|..|.+-=-+ .++.||-|++.+---..++++.
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~r~kgs~~v~ 96 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYKRLKGSPRVE 96 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhhccCCCCcC
Confidence 34579999999753 222222223666689999943222 3668999999987555455444
No 208
>KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription]
Probab=52.71 E-value=3.2 Score=33.86 Aligned_cols=39 Identities=23% Similarity=0.653 Sum_probs=28.8
Q ss_pred cccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCC
Q 037839 109 ATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSP 157 (177)
Q Consensus 109 ~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~ 157 (177)
++.|+-|.+.+.....||.. =.|+||..|+. |-+|++.+
T Consensus 92 GTKCsaC~~GIpPtqVVRkA--qd~VYHl~CF~--------C~iC~R~L 130 (383)
T KOG4577|consen 92 GTKCSACQEGIPPTQVVRKA--QDFVYHLHCFA--------CFICKRQL 130 (383)
T ss_pred CCcchhhcCCCChHHHHHHh--hcceeehhhhh--------hHhhhccc
Confidence 56799999888776666654 47999999983 56666655
No 209
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=51.83 E-value=9.4 Score=24.06 Aligned_cols=11 Identities=36% Similarity=1.108 Sum_probs=8.2
Q ss_pred ccHhhHHHHHh
Q 037839 135 FHVKCVDPWLR 145 (177)
Q Consensus 135 fH~~Ci~~Wl~ 145 (177)
||..|+..|+.
T Consensus 12 FCRNCLskWy~ 22 (68)
T PF06844_consen 12 FCRNCLSKWYR 22 (68)
T ss_dssp --HHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999985
No 210
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=51.61 E-value=4.4 Score=24.20 Aligned_cols=11 Identities=27% Similarity=0.736 Sum_probs=5.5
Q ss_pred CCcCCCCCCCC
Q 037839 149 TCPVCRTSPLP 159 (177)
Q Consensus 149 ~CP~CR~~~~~ 159 (177)
.||+|.+++..
T Consensus 22 ~CPlC~r~l~~ 32 (54)
T PF04423_consen 22 CCPLCGRPLDE 32 (54)
T ss_dssp E-TTT--EE-H
T ss_pred cCCCCCCCCCH
Confidence 79999888754
No 211
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=51.49 E-value=24 Score=32.06 Aligned_cols=35 Identities=17% Similarity=0.266 Sum_probs=19.8
Q ss_pred CCCccchhhHHHHHHHHHHHHHHH-HHhhccCcchh
Q 037839 18 IGGFGYGIGVSVGILILITTITLA-SYFCTRGQQQQ 52 (177)
Q Consensus 18 ~~~~~~~i~i~l~il~li~~i~l~-~~~~~r~~~~~ 52 (177)
...+++++++++.+++++++++++ +.+|++.....
T Consensus 266 ~~NlWII~gVlvPv~vV~~Iiiil~~~LCRk~K~eF 301 (684)
T PF12877_consen 266 PNNLWIIAGVLVPVLVVLLIIIILYWKLCRKNKLEF 301 (684)
T ss_pred CCCeEEEehHhHHHHHHHHHHHHHHHHHhcccccCC
Confidence 346777777777666655544444 44555544443
No 212
>PF05624 LSR: Lipolysis stimulated receptor (LSR); InterPro: IPR008664 This domain consists of mammalian LISCH7 protein homologues. LISCH7 is a liver-specific BHLH-ZIP transcription factor.
Probab=51.45 E-value=20 Score=20.90 Aligned_cols=20 Identities=20% Similarity=0.371 Sum_probs=13.2
Q ss_pred cchhhHHHHHHHHHHHHHHH
Q 037839 22 GYGIGVSVGILILITTITLA 41 (177)
Q Consensus 22 ~~~i~i~l~il~li~~i~l~ 41 (177)
.+-+.+++|++++++++.+-
T Consensus 3 l~V~~iilg~~ll~~LigiC 22 (49)
T PF05624_consen 3 LFVVLIILGALLLLLLIGIC 22 (49)
T ss_pred EEEeHHHHHHHHHHHHHHHH
Confidence 34556777777777766654
No 213
>PF11980 DUF3481: Domain of unknown function (DUF3481); InterPro: IPR022579 This domain of unknown function is located in the C terminus of the eukaryotic neuropilin receptor family of proteins. It is found in association with PF00754 from PFAM, PF00431 from PFAM and PF00629 from PFAM. There are two completely conserved residues (Y and E) that may be functionally important.
Probab=50.85 E-value=24 Score=23.36 Aligned_cols=34 Identities=18% Similarity=0.314 Sum_probs=16.3
Q ss_pred CCCccchh-hHHHHHHHHHHHHHHHHHhhccCcch
Q 037839 18 IGGFGYGI-GVSVGILILITTITLASYFCTRGQQQ 51 (177)
Q Consensus 18 ~~~~~~~i-~i~l~il~li~~i~l~~~~~~r~~~~ 51 (177)
++.++|.| +..-+.+++..+.+.+..+|.|.+..
T Consensus 12 lp~~~yyiiA~gga~llL~~v~l~vvL~C~r~~~a 46 (87)
T PF11980_consen 12 LPPYWYYIIAMGGALLLLVAVCLGVVLYCHRFHWA 46 (87)
T ss_pred CCceeeHHHhhccHHHHHHHHHHHHHHhhhhhccc
Confidence 44455544 44444444444443445556655543
No 214
>PF14169 YdjO: Cold-inducible protein YdjO
Probab=50.75 E-value=8.5 Score=23.75 Aligned_cols=14 Identities=29% Similarity=1.039 Sum_probs=10.9
Q ss_pred CCCCcCCCCCCCCC
Q 037839 147 HPTCPVCRTSPLPT 160 (177)
Q Consensus 147 ~~~CP~CR~~~~~~ 160 (177)
.+.||+|.++....
T Consensus 39 ~p~CPlC~s~M~~~ 52 (59)
T PF14169_consen 39 EPVCPLCKSPMVSG 52 (59)
T ss_pred CccCCCcCCccccc
Confidence 45899999987654
No 215
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=50.69 E-value=14 Score=30.69 Aligned_cols=50 Identities=26% Similarity=0.531 Sum_probs=36.8
Q ss_pred cccCccccccccCCCceeecC-CCCCcccHhhHHHHHhcCCCCcCCCCCCCC
Q 037839 109 ATCCSICLADYRSSDMLRLLP-DCSHLFHVKCVDPWLRLHPTCPVCRTSPLP 159 (177)
Q Consensus 109 ~~~C~ICl~~f~~~~~v~~l~-~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~~ 159 (177)
...|+||-+.....+.- .+| .|+|..|..|+..-...+..||.||.+...
T Consensus 249 ~~s~p~~~~~~~~~d~~-~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~~ 299 (327)
T KOG2068|consen 249 PPSCPICYEDLDLTDSN-FLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYER 299 (327)
T ss_pred CCCCCCCCCcccccccc-cccccccccchhhhhhcccccCCCCCccCCcccc
Confidence 36799999987554433 334 488888888887766778899999977654
No 216
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=50.31 E-value=57 Score=24.40 Aligned_cols=10 Identities=40% Similarity=0.468 Sum_probs=3.9
Q ss_pred hhHHHHHHHH
Q 037839 25 IGVSVGILIL 34 (177)
Q Consensus 25 i~i~l~il~l 34 (177)
+.|++++..+
T Consensus 98 ~~Vl~g~s~l 107 (163)
T PF06679_consen 98 LYVLVGLSAL 107 (163)
T ss_pred HHHHHHHHHH
Confidence 3344444333
No 217
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=50.23 E-value=19 Score=28.04 Aligned_cols=16 Identities=25% Similarity=0.436 Sum_probs=8.3
Q ss_pred hHHHHHHHHHHHHHHH
Q 037839 26 GVSVGILILITTITLA 41 (177)
Q Consensus 26 ~i~l~il~li~~i~l~ 41 (177)
.|+|++|++|+.++++
T Consensus 134 lIIIAVLfLICT~LfL 149 (227)
T PF05399_consen 134 LIIIAVLFLICTLLFL 149 (227)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3555555555544444
No 218
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=50.19 E-value=20 Score=26.84 Aligned_cols=17 Identities=24% Similarity=0.499 Sum_probs=9.3
Q ss_pred chhhHHHHHHHHHHHHH
Q 037839 23 YGIGVSVGILILITTIT 39 (177)
Q Consensus 23 ~~i~i~l~il~li~~i~ 39 (177)
..++|+++|++++++|+
T Consensus 76 ~~~~iivgvi~~Vi~Iv 92 (179)
T PF13908_consen 76 FITGIIVGVICGVIAIV 92 (179)
T ss_pred ceeeeeeehhhHHHHHH
Confidence 35556666666555443
No 219
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=49.28 E-value=9.6 Score=25.76 Aligned_cols=22 Identities=9% Similarity=0.404 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHhhccCcchh
Q 037839 30 GILILITTITLASYFCTRGQQQQ 52 (177)
Q Consensus 30 ~il~li~~i~l~~~~~~r~~~~~ 52 (177)
|+++++++ +.+++.|+.++...
T Consensus 50 G~iLilIi-i~Lv~CC~~K~K~~ 71 (98)
T PF07204_consen 50 GLILILII-IALVCCCRAKHKTS 71 (98)
T ss_pred hhhhHHHH-HHHHHHhhhhhhhH
Confidence 44444333 44555565555433
No 220
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=49.14 E-value=3.2 Score=33.97 Aligned_cols=39 Identities=23% Similarity=0.477 Sum_probs=29.8
Q ss_pred cccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCC
Q 037839 109 ATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHP 148 (177)
Q Consensus 109 ~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~ 148 (177)
...|.+|+++|..+....... |--+||..|+-.|+.+..
T Consensus 214 ~rvC~~CF~el~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 252 (288)
T KOG1729|consen 214 IRVCDICFEELEKGARGDRED-SLPVFHGKCYPNWLTTGA 252 (288)
T ss_pred ceecHHHHHHHhcccccchhh-cccccccccccccccccc
Confidence 348999999998755555554 666999999999987643
No 221
>PF14979 TMEM52: Transmembrane 52
Probab=48.88 E-value=26 Score=25.72 Aligned_cols=32 Identities=22% Similarity=0.339 Sum_probs=16.3
Q ss_pred CccchhhHHHHHHHHHHHHHHH-HHhhccCcch
Q 037839 20 GFGYGIGVSVGILILITTITLA-SYFCTRGQQQ 51 (177)
Q Consensus 20 ~~~~~i~i~l~il~li~~i~l~-~~~~~r~~~~ 51 (177)
.|.+.++++++++++++.+... +.||..+++.
T Consensus 19 LWyIwLill~~~llLLCG~ta~C~rfCClrk~~ 51 (154)
T PF14979_consen 19 LWYIWLILLIGFLLLLCGLTASCVRFCCLRKQA 51 (154)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 4455555555555555544333 4545555443
No 222
>PRK01844 hypothetical protein; Provisional
Probab=48.75 E-value=23 Score=22.71 Aligned_cols=25 Identities=20% Similarity=0.542 Sum_probs=13.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhhccCc
Q 037839 25 IGVSVGILILITTITLASYFCTRGQ 49 (177)
Q Consensus 25 i~i~l~il~li~~i~l~~~~~~r~~ 49 (177)
++++++++.++.-+++.||+-++..
T Consensus 5 ~~I~l~I~~li~G~~~Gff~ark~~ 29 (72)
T PRK01844 5 LGILVGVVALVAGVALGFFIARKYM 29 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555443
No 223
>PF03229 Alpha_GJ: Alphavirus glycoprotein J; InterPro: IPR004913 The exact function of the herpesvirus glycoprotein J is unknown, but it appears to play a role in the inhibition of apotosis of the host cell [].; GO: 0019050 suppression by virus of host apoptosis
Probab=48.74 E-value=35 Score=24.04 Aligned_cols=26 Identities=15% Similarity=0.224 Sum_probs=15.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHhhccC
Q 037839 23 YGIGVSVGILILITTITLASYFCTRG 48 (177)
Q Consensus 23 ~~i~i~l~il~li~~i~l~~~~~~r~ 48 (177)
+.+.++||-|+++.+..+-.....+|
T Consensus 84 ~aLp~VIGGLcaL~LaamGA~~LLrR 109 (126)
T PF03229_consen 84 FALPLVIGGLCALTLAAMGAGALLRR 109 (126)
T ss_pred cchhhhhhHHHHHHHHHHHHHHHHHH
Confidence 66667777777666665554433333
No 224
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=48.48 E-value=22 Score=24.67 Aligned_cols=16 Identities=13% Similarity=0.125 Sum_probs=6.8
Q ss_pred hHHHHHHHHHHHHHHH
Q 037839 26 GVSVGILILITTITLA 41 (177)
Q Consensus 26 ~i~l~il~li~~i~l~ 41 (177)
..++++++++++++-+
T Consensus 4 l~il~llLll~l~asl 19 (107)
T PF15330_consen 4 LGILALLLLLSLAASL 19 (107)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444443333
No 225
>PF14851 FAM176: FAM176 family
Probab=48.31 E-value=34 Score=25.34 Aligned_cols=16 Identities=25% Similarity=0.603 Sum_probs=8.7
Q ss_pred chhhHHHHHHHHHHHH
Q 037839 23 YGIGVSVGILILITTI 38 (177)
Q Consensus 23 ~~i~i~l~il~li~~i 38 (177)
|..+|.+|+++.++++
T Consensus 26 Fv~gVC~GLlLtLcll 41 (153)
T PF14851_consen 26 FVSGVCAGLLLTLCLL 41 (153)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3345666665555544
No 226
>PHA02819 hypothetical protein; Provisional
Probab=48.28 E-value=34 Score=21.81 Aligned_cols=12 Identities=17% Similarity=-0.272 Sum_probs=4.7
Q ss_pred CCCCCCCccchh
Q 037839 14 GSSNIGGFGYGI 25 (177)
Q Consensus 14 ~~~~~~~~~~~i 25 (177)
++++-.++.+.|
T Consensus 39 ~~~~~~~~~~~i 50 (71)
T PHA02819 39 KTKKSFLRYYLI 50 (71)
T ss_pred cccCChhHHHHH
Confidence 333333444444
No 227
>PRK11827 hypothetical protein; Provisional
Probab=48.27 E-value=7.2 Score=24.14 Aligned_cols=19 Identities=26% Similarity=0.349 Sum_probs=12.4
Q ss_pred HHHhcCCCCcCCCCCCCCC
Q 037839 142 PWLRLHPTCPVCRTSPLPT 160 (177)
Q Consensus 142 ~Wl~~~~~CP~CR~~~~~~ 160 (177)
.|+..--.||.|+.++...
T Consensus 3 ~~LLeILaCP~ckg~L~~~ 21 (60)
T PRK11827 3 HRLLEIIACPVCNGKLWYN 21 (60)
T ss_pred hHHHhheECCCCCCcCeEc
Confidence 3444445688888887654
No 228
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=48.19 E-value=15 Score=29.98 Aligned_cols=39 Identities=18% Similarity=0.480 Sum_probs=28.4
Q ss_pred CcccCccccccccCCCceeecCCCCCcccHhhHHHHHhc
Q 037839 108 TATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRL 146 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~ 146 (177)
....|.+|.|.+++.--|..-..=+|-||--|-..-++.
T Consensus 267 apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~ 305 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQ 305 (352)
T ss_pred CceeehhhhhhhccCceeecCCCcccceecccCHHHHHh
Confidence 346799999999876554322223699999999887765
No 229
>PHA03265 envelope glycoprotein D; Provisional
Probab=47.75 E-value=19 Score=30.31 Aligned_cols=15 Identities=20% Similarity=0.574 Sum_probs=8.1
Q ss_pred HHHHHHhhccCcchh
Q 037839 38 ITLASYFCTRGQQQQ 52 (177)
Q Consensus 38 i~l~~~~~~r~~~~~ 52 (177)
+..++|+|.|++...
T Consensus 364 vg~il~~~~rr~k~~ 378 (402)
T PHA03265 364 VGVILYVCLRRKKEL 378 (402)
T ss_pred hhHHHHHHhhhhhhh
Confidence 334456666665544
No 230
>PF14946 DUF4501: Domain of unknown function (DUF4501)
Probab=47.45 E-value=73 Score=23.90 Aligned_cols=37 Identities=14% Similarity=0.318 Sum_probs=20.2
Q ss_pred CCCCCccchhhHHHHHHHHHHHHHHH---HHhhccCcchh
Q 037839 16 SNIGGFGYGIGVSVGILILITTITLA---SYFCTRGQQQQ 52 (177)
Q Consensus 16 ~~~~~~~~~i~i~l~il~li~~i~l~---~~~~~r~~~~~ 52 (177)
.++++-+.+..+++|.+++-+.+++- |||++|..+.-
T Consensus 82 p~~g~P~vAASL~LgTffIS~~LilSvA~FFYLKrs~kLP 121 (180)
T PF14946_consen 82 PHTGGPQVAASLFLGTFFISLGLILSVASFFYLKRSSKLP 121 (180)
T ss_pred CcCCChhHHHHHHHHHHHHHHHHHHHHhhheeecccccCC
Confidence 35556566677777776654333322 45555554444
No 231
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=46.98 E-value=11 Score=28.23 Aligned_cols=25 Identities=20% Similarity=0.559 Sum_probs=16.1
Q ss_pred eeecCCCCCcccHhhHHHHHhcCCCCcCCCCC
Q 037839 125 LRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTS 156 (177)
Q Consensus 125 v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~ 156 (177)
+.+.+.|||++-. .....||+|.++
T Consensus 134 ~~vC~vCGy~~~g-------e~P~~CPiCga~ 158 (166)
T COG1592 134 VWVCPVCGYTHEG-------EAPEVCPICGAP 158 (166)
T ss_pred EEEcCCCCCcccC-------CCCCcCCCCCCh
Confidence 5566668987411 334589999764
No 232
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=46.89 E-value=20 Score=25.73 Aligned_cols=10 Identities=30% Similarity=0.105 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 037839 27 VSVGILILIT 36 (177)
Q Consensus 27 i~l~il~li~ 36 (177)
++++++++++
T Consensus 105 ~il~il~~i~ 114 (139)
T PHA03099 105 GIVLVLVGII 114 (139)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 233
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=46.56 E-value=16 Score=22.33 Aligned_cols=8 Identities=38% Similarity=0.106 Sum_probs=3.2
Q ss_pred ccchhhHH
Q 037839 21 FGYGIGVS 28 (177)
Q Consensus 21 ~~~~i~i~ 28 (177)
+.|.++++
T Consensus 6 ~Iy~~~Vi 13 (58)
T PF13314_consen 6 LIYYILVI 13 (58)
T ss_pred HHHHHHHH
Confidence 34444333
No 234
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=46.50 E-value=9 Score=23.69 Aligned_cols=13 Identities=15% Similarity=0.189 Sum_probs=5.6
Q ss_pred CCCCCCCCCCCCC
Q 037839 3 ETTVKASDGFLGS 15 (177)
Q Consensus 3 ~~~~~~~~~~~~~ 15 (177)
|+++-+-+++...
T Consensus 3 N~~~V~v~~~~~~ 15 (68)
T PF06305_consen 3 NTQPVTVNFLFGQ 15 (68)
T ss_pred CCceEEEEEEeee
Confidence 3444444444443
No 235
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=46.26 E-value=19 Score=29.11 Aligned_cols=43 Identities=23% Similarity=0.347 Sum_probs=26.7
Q ss_pred cccCccccccccCCCceeecC-CCCCcccHhhHHHH-HhcCCCCc
Q 037839 109 ATCCSICLADYRSSDMLRLLP-DCSHLFHVKCVDPW-LRLHPTCP 151 (177)
Q Consensus 109 ~~~C~ICl~~f~~~~~v~~l~-~C~H~fH~~Ci~~W-l~~~~~CP 151 (177)
-..|.||++-...+-.-.-|. .=.=.-|.+|++.| +..++.||
T Consensus 30 LsfChiCfEl~iegvpks~llHtkSlRGHrdCFEK~HlIanQ~~p 74 (285)
T PF06937_consen 30 LSFCHICFELSIEGVPKSNLLHTKSLRGHRDCFEKYHLIANQDCP 74 (285)
T ss_pred eeecceeeccccccCccccccccccccchHHHHHHHHHHHcCCCC
Confidence 446999998865543211111 01113689999999 46678898
No 236
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=46.20 E-value=33 Score=23.60 Aligned_cols=24 Identities=25% Similarity=0.461 Sum_probs=18.4
Q ss_pred CCcccHhhHHHHHhc---------CCCCcCCCC
Q 037839 132 SHLFHVKCVDPWLRL---------HPTCPVCRT 155 (177)
Q Consensus 132 ~H~fH~~Ci~~Wl~~---------~~~CP~CR~ 155 (177)
.=.|+..|+..++.. ...||.||.
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 556999999888633 347999987
No 237
>PRK13415 flagella biosynthesis protein FliZ; Provisional
Probab=45.20 E-value=38 Score=26.60 Aligned_cols=33 Identities=9% Similarity=-0.112 Sum_probs=16.4
Q ss_pred CCCCCccchhhHHHHHHHHHHHHHHHHHhhccC
Q 037839 16 SNIGGFGYGIGVSVGILILITTITLASYFCTRG 48 (177)
Q Consensus 16 ~~~~~~~~~i~i~l~il~li~~i~l~~~~~~r~ 48 (177)
.+....+..+-+++++++++.+++++..|..++
T Consensus 60 ~~~~s~~~l~qmi~aL~~VI~Liy~l~rwL~rR 92 (219)
T PRK13415 60 ASSVSAFDFVKLIGATLFVIFLIYALVKWLNKR 92 (219)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333344455555555555555555554444443
No 238
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=45.13 E-value=1.7 Score=27.79 Aligned_cols=40 Identities=18% Similarity=0.408 Sum_probs=20.8
Q ss_pred cCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCCC
Q 037839 111 CCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPLP 159 (177)
Q Consensus 111 ~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~~ 159 (177)
.|+.|..++... =+|.++..|-.. +.....||-|.+++.-
T Consensus 3 ~CP~C~~~L~~~--------~~~~~C~~C~~~-~~~~a~CPdC~~~Le~ 42 (70)
T PF07191_consen 3 TCPKCQQELEWQ--------GGHYHCEACQKD-YKKEAFCPDCGQPLEV 42 (70)
T ss_dssp B-SSS-SBEEEE--------TTEEEETTT--E-EEEEEE-TTT-SB-EE
T ss_pred cCCCCCCccEEe--------CCEEECcccccc-ceecccCCCcccHHHH
Confidence 588887775432 256666667655 3555678888887753
No 239
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=45.13 E-value=6.8 Score=28.82 Aligned_cols=27 Identities=26% Similarity=0.367 Sum_probs=13.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhhccC
Q 037839 22 GYGIGVSVGILILITTITLASYFCTRG 48 (177)
Q Consensus 22 ~~~i~i~l~il~li~~i~l~~~~~~r~ 48 (177)
..+|++++.++++++.|..++++-++.
T Consensus 11 ~i~igi~Ll~lLl~cgiGcvwhwkhr~ 37 (158)
T PF11770_consen 11 AISIGISLLLLLLLCGIGCVWHWKHRD 37 (158)
T ss_pred HHHHHHHHHHHHHHHhcceEEEeeccC
Confidence 345555555555555555555544443
No 240
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=44.54 E-value=18 Score=29.84 Aligned_cols=49 Identities=24% Similarity=0.556 Sum_probs=38.4
Q ss_pred CcccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCCC
Q 037839 108 TATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPLP 159 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~~ 159 (177)
+...|.||...+..+... - .|.|.|+..|-..|....+.||.|+....+
T Consensus 104 ~~~~~~~~~g~l~vpt~~--q-g~w~qf~~~~p~~~~~~~~~~~d~~~~~~p 152 (324)
T KOG0824|consen 104 DHDICYICYGKLTVPTRI--Q-GCWHQFCYVCPKSNFAMGNDCPDCRGKISP 152 (324)
T ss_pred CccceeeeeeeEEecccc--c-CceeeeeecCCchhhhhhhccchhhcCcCc
Confidence 345688998887766432 2 399999999999999998999999886654
No 241
>PF14914 LRRC37AB_C: LRRC37A/B like protein 1 C-terminal domain
Probab=44.10 E-value=31 Score=25.33 Aligned_cols=7 Identities=43% Similarity=1.331 Sum_probs=4.3
Q ss_pred CCCccch
Q 037839 18 IGGFGYG 24 (177)
Q Consensus 18 ~~~~~~~ 24 (177)
.++++|.
T Consensus 112 Vp~~gY~ 118 (154)
T PF14914_consen 112 VPGYGYN 118 (154)
T ss_pred ccccccc
Confidence 5666665
No 242
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=44.00 E-value=5.8 Score=22.48 Aligned_cols=25 Identities=28% Similarity=0.501 Sum_probs=14.7
Q ss_pred CCCCcccHhhHHHHHhcCCCCcCCCC
Q 037839 130 DCSHLFHVKCVDPWLRLHPTCPVCRT 155 (177)
Q Consensus 130 ~C~H~fH~~Ci~~Wl~~~~~CP~CR~ 155 (177)
.|||.|-...-..= .....||.|.+
T Consensus 10 ~Cg~~fe~~~~~~~-~~~~~CP~Cg~ 34 (42)
T PF09723_consen 10 ECGHEFEVLQSISE-DDPVPCPECGS 34 (42)
T ss_pred CCCCEEEEEEEcCC-CCCCcCCCCCC
Confidence 48888754321110 23457999987
No 243
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=43.77 E-value=19 Score=32.21 Aligned_cols=25 Identities=16% Similarity=0.317 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHhhccCcch
Q 037839 27 VSVGILILITTITLASYFCTRGQQQ 51 (177)
Q Consensus 27 i~l~il~li~~i~l~~~~~~r~~~~ 51 (177)
+++++++++++++++.|+++|+...
T Consensus 5 ~ii~i~ii~i~~~~~~~~~rr~~~~ 29 (569)
T PRK04778 5 LIIAIVVIIIIAYLAGLILRKRNYK 29 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444555555444
No 244
>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known [].
Probab=43.58 E-value=31 Score=25.30 Aligned_cols=25 Identities=28% Similarity=0.500 Sum_probs=15.8
Q ss_pred CCCCCCCCccchhhHHHHHHHHHHH
Q 037839 13 LGSSNIGGFGYGIGVSVGILILITT 37 (177)
Q Consensus 13 ~~~~~~~~~~~~i~i~l~il~li~~ 37 (177)
..+..|.|+.++++++++++..+.+
T Consensus 58 lsgtAIaGIVfgiVfimgvva~i~i 82 (155)
T PF10873_consen 58 LSGTAIAGIVFGIVFIMGVVAGIAI 82 (155)
T ss_pred cccceeeeeehhhHHHHHHHHHHHH
Confidence 3466777887777766666555433
No 245
>PF09451 ATG27: Autophagy-related protein 27; InterPro: IPR018939 Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. There are more than 25 AuTophaGy-related (ATG) genes that are essential for autophagy, although it is still not known how the autophagosome is made. Atg9 is a potential membrane carrier to deliver lipids that are used to form the vesicle. Atg27 is another transmembrane protein, and is a cycling protein []. It acts as an effector of VPS34 phosphatidylinositol 3-phosphate kinase signalling and regulates the cytoplasm to vacuole transport (Cvt) vesicle formation. It is also required for autophagy-dependent cycling of ATG9.
Probab=43.38 E-value=38 Score=27.20 Aligned_cols=9 Identities=33% Similarity=0.405 Sum_probs=4.0
Q ss_pred HHHhhCCCc
Q 037839 87 STIKSYPKL 95 (177)
Q Consensus 87 ~~~~~~p~~ 95 (177)
+....+|.+
T Consensus 241 dfw~~lP~l 249 (268)
T PF09451_consen 241 DFWRSLPYL 249 (268)
T ss_pred hHHHhchHH
Confidence 344445433
No 246
>PF12259 DUF3609: Protein of unknown function (DUF3609); InterPro: IPR022048 This domain family is found in eukaryotes and viruses, and is typically between 348 and 360 amino acids in length.
Probab=43.04 E-value=41 Score=28.48 Aligned_cols=27 Identities=30% Similarity=0.422 Sum_probs=10.2
Q ss_pred CCCccchhhHHHHHHHHHH-HHHHHHHh
Q 037839 18 IGGFGYGIGVSVGILILIT-TITLASYF 44 (177)
Q Consensus 18 ~~~~~~~i~i~l~il~li~-~i~l~~~~ 44 (177)
++++.+.+..+.+.+++++ ++.+++++
T Consensus 293 ~~~~~~~~i~v~~~~vli~vl~~~~~~~ 320 (361)
T PF12259_consen 293 IGDYPIVHIAVCGAIVLIIVLISLAWLY 320 (361)
T ss_pred hcCCceEEEehhHHHHHHHHHHHHHhhe
Confidence 3344444333333333333 33333333
No 247
>PLN02436 cellulose synthase A
Probab=42.18 E-value=45 Score=32.27 Aligned_cols=60 Identities=18% Similarity=0.357 Sum_probs=37.5
Q ss_pred CcccCcccccccc---CCCceeecCCCCCcccHhhHHHHHh-cCCCCcCCCCCCCCCCCCCCcc
Q 037839 108 TATCCSICLADYR---SSDMLRLLPDCSHLFHVKCVDPWLR-LHPTCPVCRTSPLPTPLSTPLA 167 (177)
Q Consensus 108 ~~~~C~ICl~~f~---~~~~v~~l~~C~H~fH~~Ci~~Wl~-~~~~CP~CR~~~~~~~~~~~~~ 167 (177)
....|.||-++.. +++.-.-...|+--.|..|.+-=-+ .++.||-|++.+---..++++.
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~r~kgs~~~~ 98 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPRVE 98 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhhccCCCCcC
Confidence 3457999999963 3332222123666689999943222 3568999999987544454444
No 248
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=41.78 E-value=17 Score=21.64 Aligned_cols=23 Identities=30% Similarity=0.738 Sum_probs=13.7
Q ss_pred CCCCcccHhhHHHHHhcCCCCcCC
Q 037839 130 DCSHLFHVKCVDPWLRLHPTCPVC 153 (177)
Q Consensus 130 ~C~H~fH~~Ci~~Wl~~~~~CP~C 153 (177)
.|||.|-.. +..-......||.|
T Consensus 33 ~Cgh~w~~~-v~~R~~~~~~CP~C 55 (55)
T PF14311_consen 33 KCGHEWKAS-VNDRTRRGKGCPYC 55 (55)
T ss_pred CCCCeeEcc-HhhhccCCCCCCCC
Confidence 478876443 22223456679988
No 249
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=41.65 E-value=8.6 Score=23.14 Aligned_cols=18 Identities=33% Similarity=0.929 Sum_probs=13.8
Q ss_pred eecCCCCCcccHhhHHHH
Q 037839 126 RLLPDCSHLFHVKCVDPW 143 (177)
Q Consensus 126 ~~l~~C~H~fH~~Ci~~W 143 (177)
..-+.|+|.|+..|...|
T Consensus 41 v~C~~C~~~fC~~C~~~~ 58 (64)
T smart00647 41 VTCPKCGFSFCFRCKVPW 58 (64)
T ss_pred eECCCCCCeECCCCCCcC
Confidence 344348999999998887
No 250
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=41.12 E-value=19 Score=33.40 Aligned_cols=47 Identities=23% Similarity=0.552 Sum_probs=29.9
Q ss_pred cccCccccccccC----C-----CceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCCC
Q 037839 109 ATCCSICLADYRS----S-----DMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPLP 159 (177)
Q Consensus 109 ~~~C~ICl~~f~~----~-----~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~~ 159 (177)
...|+=|...|.. | ....+.|.|.|-.|..=|.. ...||+|......
T Consensus 1131 ~~~c~ec~~kfP~CiasG~pIt~~~fWlC~~CkH~a~~~EIs~----y~~CPLCHs~~~~ 1186 (1189)
T KOG2041|consen 1131 DLQCSECQTKFPVCIASGRPITDNIFWLCPRCKHRAHQHEISK----YNCCPLCHSMESF 1186 (1189)
T ss_pred CCCChhhcCcCceeeccCCccccceEEEccccccccccccccc----cccCccccChhhc
Confidence 3456666666631 1 23445556999888776644 4679999887643
No 251
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=41.07 E-value=20 Score=24.38 Aligned_cols=33 Identities=27% Similarity=0.403 Sum_probs=21.1
Q ss_pred cccCccccccccCCCceeecCCCCCcccHhhHHH
Q 037839 109 ATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDP 142 (177)
Q Consensus 109 ~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~ 142 (177)
...|.||......--.+... .|...||..|...
T Consensus 55 ~~~C~iC~~~~G~~i~C~~~-~C~~~fH~~CA~~ 87 (110)
T PF13832_consen 55 KLKCSICGKSGGACIKCSHP-GCSTAFHPTCARK 87 (110)
T ss_pred CCcCcCCCCCCceeEEcCCC-CCCcCCCHHHHHH
Confidence 34699998882221122222 3888999999865
No 252
>PF04341 DUF485: Protein of unknown function, DUF485; InterPro: IPR007436 This family includes several putative integral membrane proteins.
Probab=41.06 E-value=32 Score=22.87 Aligned_cols=29 Identities=14% Similarity=0.367 Sum_probs=20.4
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhhccCcc
Q 037839 22 GYGIGVSVGILILITTITLASYFCTRGQQ 50 (177)
Q Consensus 22 ~~~i~i~l~il~li~~i~l~~~~~~r~~~ 50 (177)
...+++.+|+.+++..+.+...|.++-++
T Consensus 51 ~~t~g~~~g~~~~~~~~~l~~~Yv~~An~ 79 (91)
T PF04341_consen 51 SLTLGIVLGLGQIVFAWVLTWLYVRRANR 79 (91)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 56677777777777777777777665544
No 253
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=40.94 E-value=47 Score=19.22 Aligned_cols=7 Identities=0% Similarity=-0.121 Sum_probs=2.5
Q ss_pred HHhhccC
Q 037839 42 SYFCTRG 48 (177)
Q Consensus 42 ~~~~~r~ 48 (177)
++..+++
T Consensus 27 ~w~~~~~ 33 (49)
T PF05545_consen 27 IWAYRPR 33 (49)
T ss_pred HHHHccc
Confidence 3333333
No 254
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=40.91 E-value=29 Score=32.32 Aligned_cols=18 Identities=11% Similarity=0.320 Sum_probs=11.1
Q ss_pred HHHHHHHHhhccCcchhh
Q 037839 36 TTITLASYFCTRGQQQQQ 53 (177)
Q Consensus 36 ~~i~l~~~~~~r~~~~~~ 53 (177)
+++.+++|||+|+....+
T Consensus 288 ~lL~vLl~yCrrkc~~~r 305 (807)
T PF10577_consen 288 ILLCVLLCYCRRKCLKPR 305 (807)
T ss_pred HHHHHHHHhhhcccCCcc
Confidence 344455778888765553
No 255
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=39.93 E-value=27 Score=17.96 Aligned_cols=29 Identities=17% Similarity=0.459 Sum_probs=9.7
Q ss_pred cCccccccccCCCceeecCCCCCcccHhhH
Q 037839 111 CCSICLADYRSSDMLRLLPDCSHLFHVKCV 140 (177)
Q Consensus 111 ~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci 140 (177)
.|.+|-+.... .....-..|.-.+|..|+
T Consensus 2 ~C~~C~~~~~~-~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDG-GWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S---EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCC-CceEECccCCCccChhcC
Confidence 47777777655 333433458888898885
No 256
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=39.17 E-value=50 Score=18.33 Aligned_cols=10 Identities=30% Similarity=0.647 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 037839 31 ILILITTITL 40 (177)
Q Consensus 31 il~li~~i~l 40 (177)
++++++++.+
T Consensus 16 ~llflv~iml 25 (43)
T PF11395_consen 16 FLLFLVIIML 25 (43)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 257
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=39.00 E-value=21 Score=19.22 Aligned_cols=21 Identities=19% Similarity=0.569 Sum_probs=12.3
Q ss_pred CCCCcccHhhHHHHHhcCCCCcCCCCC
Q 037839 130 DCSHLFHVKCVDPWLRLHPTCPVCRTS 156 (177)
Q Consensus 130 ~C~H~fH~~Ci~~Wl~~~~~CP~CR~~ 156 (177)
.|||++=.+. ....||+|.++
T Consensus 7 ~CG~i~~g~~------~p~~CP~Cg~~ 27 (34)
T cd00729 7 VCGYIHEGEE------APEKCPICGAP 27 (34)
T ss_pred CCCCEeECCc------CCCcCcCCCCc
Confidence 3787753221 23479999764
No 258
>PHA03054 IMV membrane protein; Provisional
Probab=38.65 E-value=59 Score=20.76 Aligned_cols=10 Identities=20% Similarity=0.225 Sum_probs=4.0
Q ss_pred CCCCCccchh
Q 037839 16 SNIGGFGYGI 25 (177)
Q Consensus 16 ~~~~~~~~~i 25 (177)
++-.++.+.|
T Consensus 43 ~~~~~~~~~i 52 (72)
T PHA03054 43 TGCWGWYWLI 52 (72)
T ss_pred cCCchHHHHH
Confidence 3333444444
No 259
>PF13179 DUF4006: Family of unknown function (DUF4006)
Probab=38.53 E-value=28 Score=21.98 Aligned_cols=18 Identities=22% Similarity=0.311 Sum_probs=7.0
Q ss_pred CCCCCccchhhHHHHHHH
Q 037839 16 SNIGGFGYGIGVSVGILI 33 (177)
Q Consensus 16 ~~~~~~~~~i~i~l~il~ 33 (177)
+++.|+-.++++++++++
T Consensus 11 nGi~G~LIAvvLLLsIl~ 28 (66)
T PF13179_consen 11 NGITGMLIAVVLLLSILA 28 (66)
T ss_pred cchHhHHHHHHHHHHHHH
Confidence 334443333333333333
No 260
>PF07245 Phlebovirus_G2: Phlebovirus glycoprotein G2; InterPro: IPR009878 This domain is found in several Phlebovirus glycoprotein G2 sequences. Members of the Bunyaviridae family acquire an envelope by budding through the lipid bilayer of the Golgi complex. The budding compartment is thought to be determined by the accumulation of the two heterodimeric membrane glycoproteins G1 and G2 in the Golgi [].
Probab=38.11 E-value=11 Score=33.26 Aligned_cols=11 Identities=27% Similarity=0.365 Sum_probs=4.5
Q ss_pred hHHHHHHHHHH
Q 037839 26 GVSVGILILIT 36 (177)
Q Consensus 26 ~i~l~il~li~ 36 (177)
+++++++++.+
T Consensus 471 ~~Il~~l~i~~ 481 (507)
T PF07245_consen 471 LIILGFLIIGI 481 (507)
T ss_pred HHHHHHHHHHH
Confidence 33444444433
No 261
>PRK11901 hypothetical protein; Reviewed
Probab=37.81 E-value=31 Score=28.73 Aligned_cols=20 Identities=25% Similarity=0.438 Sum_probs=12.8
Q ss_pred chhhHHHHHHHHHHHHHHHH
Q 037839 23 YGIGVSVGILILITTITLAS 42 (177)
Q Consensus 23 ~~i~i~l~il~li~~i~l~~ 42 (177)
-.+.|.+|||||+++|+-|-
T Consensus 36 Qh~MiGiGilVLlLLIi~Ig 55 (327)
T PRK11901 36 QHMMIGIGILVLLLLIIAIG 55 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34557777777776666654
No 262
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=37.76 E-value=17 Score=29.16 Aligned_cols=41 Identities=17% Similarity=0.259 Sum_probs=30.4
Q ss_pred cccCccccccccCCCceeecCCCCCcccHhhHHHHHhcC--CCCcC
Q 037839 109 ATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLH--PTCPV 152 (177)
Q Consensus 109 ~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~--~~CP~ 152 (177)
...|+|=...+.+| ++-. .|||+|-.+=|...+... ..||+
T Consensus 176 s~rdPis~~~I~nP--viSk-kC~HvydrDsI~~~l~~~~~i~CPv 218 (262)
T KOG2979|consen 176 SNRDPISKKPIVNP--VISK-KCGHVYDRDSIMQILCDEITIRCPV 218 (262)
T ss_pred cccCchhhhhhhch--hhhc-CcCcchhhhhHHHHhccCceeeccc
Confidence 34588887777776 3333 599999999999987663 35887
No 263
>TIGR01732 tiny_TM_bacill conserved hypothetical tiny transmembrane protein. This model represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=36.66 E-value=39 Score=17.16 Aligned_cols=6 Identities=17% Similarity=0.351 Sum_probs=2.1
Q ss_pred chhhHH
Q 037839 23 YGIGVS 28 (177)
Q Consensus 23 ~~i~i~ 28 (177)
+.+.++
T Consensus 8 f~livV 13 (26)
T TIGR01732 8 FALIVV 13 (26)
T ss_pred hHHHHH
Confidence 333333
No 264
>PF15353 HECA: Headcase protein family homologue
Probab=36.28 E-value=24 Score=24.43 Aligned_cols=13 Identities=23% Similarity=0.910 Sum_probs=11.9
Q ss_pred CCCcccHhhHHHH
Q 037839 131 CSHLFHVKCVDPW 143 (177)
Q Consensus 131 C~H~fH~~Ci~~W 143 (177)
.|+..|.+|++.|
T Consensus 40 ~~~~MH~~CF~~w 52 (107)
T PF15353_consen 40 FGQYMHRECFEKW 52 (107)
T ss_pred CCCchHHHHHHHH
Confidence 5788999999999
No 265
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=35.72 E-value=40 Score=30.89 Aligned_cols=53 Identities=23% Similarity=0.400 Sum_probs=35.7
Q ss_pred cCccccccccCCCceeecCCCCC-cccHhhHHHHH--hc----CCCCcCCCCCCCCCCCCCCcc
Q 037839 111 CCSICLADYRSSDMLRLLPDCSH-LFHVKCVDPWL--RL----HPTCPVCRTSPLPTPLSTPLA 167 (177)
Q Consensus 111 ~C~ICl~~f~~~~~v~~l~~C~H-~fH~~Ci~~Wl--~~----~~~CP~CR~~~~~~~~~~~~~ 167 (177)
.|+||-.... .+ ....||| ..+.+|..+.. .. ...||+||..+.........-
T Consensus 2 ~c~ic~~s~~---~~-~~~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~~~~s~~~~~~ 61 (669)
T KOG2231|consen 2 SCAICAFSPD---FV-GRGSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREVETKSNGDSSD 61 (669)
T ss_pred CcceeecCcc---cc-ccccccccccchhhhhhhhhhcccccccccCcccccceeeeccccccc
Confidence 4899987733 33 3345999 69999987764 22 345899999887655544333
No 266
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=35.50 E-value=65 Score=17.80 Aligned_cols=17 Identities=18% Similarity=0.555 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 037839 27 VSVGILILITTITLASY 43 (177)
Q Consensus 27 i~l~il~li~~i~l~~~ 43 (177)
+++++.++++++.++.|
T Consensus 17 i~F~l~mi~vFi~li~y 33 (38)
T PF09125_consen 17 IAFALAMILVFIALIGY 33 (38)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444445455555544
No 267
>PHA02844 putative transmembrane protein; Provisional
Probab=35.44 E-value=1e+02 Score=19.89 Aligned_cols=32 Identities=9% Similarity=-0.052 Sum_probs=14.7
Q ss_pred CCCCCCccchhhHHHHHHHHHHHHHHHHHhhc
Q 037839 15 SSNIGGFGYGIGVSVGILILITTITLASYFCT 46 (177)
Q Consensus 15 ~~~~~~~~~~i~i~l~il~li~~i~l~~~~~~ 46 (177)
.++.....-...+++.++.++++.++.+.|.+
T Consensus 39 ~~~~~~~~~~~~~ii~i~~v~~~~~~~flYLK 70 (75)
T PHA02844 39 NKNNVCSSSTKIWILTIIFVVFATFLTFLYLK 70 (75)
T ss_pred cccccCChhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334444444555554444444444444443
No 268
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=35.21 E-value=19 Score=28.65 Aligned_cols=48 Identities=21% Similarity=0.414 Sum_probs=33.7
Q ss_pred cccCccccccccCCCceeecCCCCCcccHhhHHHHHhc--CCCCcC--CCCCCCC
Q 037839 109 ATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRL--HPTCPV--CRTSPLP 159 (177)
Q Consensus 109 ~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~--~~~CP~--CR~~~~~ 159 (177)
...|+|=+..+..+ ....+|+|.|-.+-|...++. -..||. |.+.+.-
T Consensus 189 ~nrCpitl~p~~~p---ils~kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~~~ 240 (275)
T COG5627 189 SNRCPITLNPDFYP---ILSSKCNHKPEMDLINKKLQVECTRVCPRLICSQKEVV 240 (275)
T ss_pred cccCCcccCcchhH---HHHhhhcccccHHHHHHHhcCCceeecchhhcchheec
Confidence 34699988887665 233359999999999998874 445775 6554443
No 269
>COG3114 CcmD Heme exporter protein D [Intracellular trafficking and secretion]
Probab=35.13 E-value=11 Score=23.61 Aligned_cols=31 Identities=16% Similarity=0.413 Sum_probs=19.8
Q ss_pred CCCCCCCCCccchhhHHHHHHHHHHHHHHHH
Q 037839 12 FLGSSNIGGFGYGIGVSVGILILITTITLAS 42 (177)
Q Consensus 12 ~~~~~~~~~~~~~i~i~l~il~li~~i~l~~ 42 (177)
|++-.+-+|+++.+...+++-++.+.++++-
T Consensus 6 w~dFfaMGgyafyVWlA~~~tll~l~~l~v~ 36 (67)
T COG3114 6 WSDFFAMGGYAFYVWLAVGMTLLPLAVLVVH 36 (67)
T ss_pred HHHHHHccCchHHHHHHHHHHHHHHHHHHHH
Confidence 3444566788888877777766655554443
No 270
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=34.54 E-value=20 Score=32.09 Aligned_cols=34 Identities=26% Similarity=0.632 Sum_probs=23.7
Q ss_pred CcccCccccccccC-----------CCceeecCCCCCcccHhhHHHH
Q 037839 108 TATCCSICLADYRS-----------SDMLRLLPDCSHLFHVKCVDPW 143 (177)
Q Consensus 108 ~~~~C~ICl~~f~~-----------~~~v~~l~~C~H~fH~~Ci~~W 143 (177)
....|+||.|.|+. .+-|.+. =|-+||..|+..-
T Consensus 512 ~~~~C~IC~EkFe~v~d~e~~~Wm~kdaV~le--~G~ifH~~Cl~e~ 556 (579)
T KOG2071|consen 512 RQASCPICQEKFEVVFDQEEDLWMYKDAVYLE--FGRIFHSKCLSEK 556 (579)
T ss_pred cccCCcccccccceeecchhhheeecceeeec--cCceeeccccchH
Confidence 45679999999963 1223322 3889999998764
No 271
>COG4357 Zinc finger domain containing protein (CHY type) [Function unknown]
Probab=34.22 E-value=35 Score=23.22 Aligned_cols=29 Identities=17% Similarity=0.414 Sum_probs=18.8
Q ss_pred CCCcccHhhHHHHHhcCCCCcCCCCCCCCC
Q 037839 131 CSHLFHVKCVDPWLRLHPTCPVCRTSPLPT 160 (177)
Q Consensus 131 C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~~~ 160 (177)
||+--|..-+.++. .-..||.|++++.|.
T Consensus 65 CGvC~~~LT~~EY~-~~~~Cp~C~spFNp~ 93 (105)
T COG4357 65 CGVCRKLLTRAEYG-MCGSCPYCQSPFNPG 93 (105)
T ss_pred hhhhhhhhhHHHHh-hcCCCCCcCCCCCcc
Confidence 66655555555543 234699999999774
No 272
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.06 E-value=57 Score=20.81 Aligned_cols=22 Identities=9% Similarity=0.244 Sum_probs=8.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhcc
Q 037839 26 GVSVGILILITTITLASYFCTR 47 (177)
Q Consensus 26 ~i~l~il~li~~i~l~~~~~~r 47 (177)
++++.++.++..++.-+|+-+|
T Consensus 6 ail~ivl~ll~G~~~G~fiark 27 (71)
T COG3763 6 AILLIVLALLAGLIGGFFIARK 27 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3433333333333344444333
No 273
>PF07438 DUF1514: Protein of unknown function (DUF1514); InterPro: IPR009999 This entry is represented by Bacteriophage phi PVL, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Staphylococcus aureus and related bacteriophage proteins of around 65 residues in length. The function of this family is unknown.
Probab=33.58 E-value=41 Score=21.09 Aligned_cols=15 Identities=27% Similarity=0.388 Sum_probs=7.8
Q ss_pred chhhHHHHHHHHHHH
Q 037839 23 YGIGVSVGILILITT 37 (177)
Q Consensus 23 ~~i~i~l~il~li~~ 37 (177)
..+.+++++++++++
T Consensus 3 IiiSIvLai~lLI~l 17 (66)
T PF07438_consen 3 IIISIVLAIALLISL 17 (66)
T ss_pred hhHHHHHHHHHHHHH
Confidence 445555555555443
No 274
>PF09777 OSTMP1: Osteopetrosis-associated transmembrane protein 1 precursor; InterPro: IPR019172 Osteopetrosis-associated transmembrane protein 1 (OSTM1) is required for osteoclast and melanocyte maturation and function. Mutations in OSTM1 give rise to autosomal recessive osteopetrosis, also called autosomal recessive Albers-Schonberg disease [, ].
Probab=33.09 E-value=53 Score=26.03 Aligned_cols=30 Identities=30% Similarity=0.277 Sum_probs=17.0
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHhhccCcc
Q 037839 21 FGYGIGVSVGILILITTITLASYFCTRGQQ 50 (177)
Q Consensus 21 ~~~~i~i~l~il~li~~i~l~~~~~~r~~~ 50 (177)
.+..|++++.++++.+++.+..|+.-+++.
T Consensus 189 ~~~~i~v~~~vl~lpv~FY~~s~~~~~~~~ 218 (237)
T PF09777_consen 189 ETAVIAVSVFVLFLPVLFYLSSYLHSERKK 218 (237)
T ss_pred hhHHHHHHHHHHHHHHHHHHhheeeecccc
Confidence 444455555555566666666666555544
No 275
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=33.03 E-value=95 Score=21.07 Aligned_cols=27 Identities=15% Similarity=0.087 Sum_probs=12.2
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHhhccC
Q 037839 21 FGYGIGVSVGILILITTITLASYFCTRG 48 (177)
Q Consensus 21 ~~~~i~i~l~il~li~~i~l~~~~~~r~ 48 (177)
......++++++.++ ++++++|.....
T Consensus 58 ~~~~~iili~lls~v-~IlVily~IyYF 84 (101)
T PF06024_consen 58 QNNGNIILISLLSFV-CILVILYAIYYF 84 (101)
T ss_pred cccccchHHHHHHHH-HHHHHHhhheEE
Confidence 333444555554444 444444444444
No 276
>PF12297 EVC2_like: Ellis van Creveld protein 2 like protein; InterPro: IPR022076 This family of proteins is found in eukaryotes. Proteins in this family are typically between 571 and 1310 amino acids in length. There are two conserved sequence motifs: LPA and ELH. EVC2 is implicated in Ellis van Creveld chondrodysplastic dwarfism in humans. Mutations in this protein can give rise to this congenital condition. LIMBIN is a protein which shares around 80% sequence homology with EVC2 and it is implicated in a similar condition in bovine chondrodysplastic dwarfism.
Probab=32.76 E-value=49 Score=28.55 Aligned_cols=28 Identities=11% Similarity=0.171 Sum_probs=15.7
Q ss_pred CCCCCCCCCCCccchhhHHHHHHHHHHH
Q 037839 10 DGFLGSSNIGGFGYGIGVSVGILILITT 37 (177)
Q Consensus 10 ~~~~~~~~~~~~~~~i~i~l~il~li~~ 37 (177)
....++-+..+.+|.+++++++++..+.
T Consensus 57 ~~vlpNHGlhaagFfvaflvslVL~~l~ 84 (429)
T PF12297_consen 57 ISVLPNHGLHAAGFFVAFLVSLVLTWLC 84 (429)
T ss_pred ceeccCcchHHHHHHHHHHHHHHHHHHH
Confidence 4445555666666666666655554443
No 277
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=32.52 E-value=32 Score=23.96 Aligned_cols=34 Identities=21% Similarity=0.302 Sum_probs=21.5
Q ss_pred CcccCccccccccC--CCceeecCCCCCcccHhhHHH
Q 037839 108 TATCCSICLADYRS--SDMLRLLPDCSHLFHVKCVDP 142 (177)
Q Consensus 108 ~~~~C~ICl~~f~~--~~~v~~l~~C~H~fH~~Ci~~ 142 (177)
....|++|...|.. +...... +|+|.+|..|-..
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~-~C~~~VC~~C~~~ 88 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCV-DCKHRVCKKCGVY 88 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEET-TTTEEEETTSEEE
T ss_pred CCcchhhhCCcccccCCCCCcCC-cCCccccCccCCc
Confidence 45689999998743 2233333 5999999998644
No 278
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=32.51 E-value=20 Score=32.04 Aligned_cols=23 Identities=17% Similarity=0.522 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHhhccCcch
Q 037839 29 VGILILITTITLASYFCTRGQQQ 51 (177)
Q Consensus 29 l~il~li~~i~l~~~~~~r~~~~ 51 (177)
+|+++++++++++.|+.+|+...
T Consensus 3 I~iivi~l~~~~~~~~~rk~~~k 25 (560)
T PF06160_consen 3 IGIIVIVLIIYIIGYIYRKRYYK 25 (560)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555544433
No 279
>PF09472 MtrF: Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF); InterPro: IPR013347 Many archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This domain is mostly found in MtrF, where it covers the entire length of the protein. This polypeptide is one of eight subunits of the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase complex found in methanogenic archaea. This is a membrane-associated enzyme complex that uses methyl-transfer reactions to drive a sodium-ion pump []. MtrF itself is involved in the transfer of the methyl group from N5-methyltetrahydromethanopterin to coenzyme M. Subsequently, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase. In some organisms this domain is found at the C-terminal region of what appears to be a fusion of the MtrA and MtrF proteins [, ]. The function of these proteins is unknown, though it is likely that they are involved in C1 metabolism.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016020 membrane
Probab=32.22 E-value=23 Score=22.19 Aligned_cols=19 Identities=21% Similarity=0.384 Sum_probs=8.7
Q ss_pred CccchhhHHHHHHHHHHHH
Q 037839 20 GFGYGIGVSVGILILITTI 38 (177)
Q Consensus 20 ~~~~~i~i~l~il~li~~i 38 (177)
-.|+.+++++++++++..+
T Consensus 42 ~~GfaiG~~~AlvLv~ip~ 60 (64)
T PF09472_consen 42 IKGFAIGFLFALVLVGIPI 60 (64)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3445555555444444433
No 280
>COG2835 Uncharacterized conserved protein [Function unknown]
Probab=31.85 E-value=22 Score=21.97 Aligned_cols=11 Identities=36% Similarity=0.999 Sum_probs=9.0
Q ss_pred CCcCCCCCCCC
Q 037839 149 TCPVCRTSPLP 159 (177)
Q Consensus 149 ~CP~CR~~~~~ 159 (177)
.||+||.++.-
T Consensus 10 aCP~~kg~L~~ 20 (60)
T COG2835 10 ACPVCKGPLVY 20 (60)
T ss_pred eccCcCCcceE
Confidence 59999999754
No 281
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=31.82 E-value=16 Score=31.73 Aligned_cols=37 Identities=16% Similarity=0.295 Sum_probs=25.6
Q ss_pred ccCccccccccCCCcee----ecCCCCCcccHhhHHHHHhc
Q 037839 110 TCCSICLADYRSSDMLR----LLPDCSHLFHVKCVDPWLRL 146 (177)
Q Consensus 110 ~~C~ICl~~f~~~~~v~----~l~~C~H~fH~~Ci~~Wl~~ 146 (177)
..|+.|....+...-.. ....|+|.||+.|+..|-..
T Consensus 227 k~CP~c~~~iek~~gc~~~~~~~~~c~~~FCw~Cl~~~~~h 267 (444)
T KOG1815|consen 227 KECPKCKVPIEKDGGCNHMTCKSASCKHEFCWVCLASLSDH 267 (444)
T ss_pred ccCCCcccchhccCCccccccccCCcCCeeceeeecccccc
Confidence 34999988887655221 11139999999998888644
No 282
>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA. The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).
Probab=31.75 E-value=28 Score=24.21 Aligned_cols=24 Identities=25% Similarity=0.537 Sum_probs=15.3
Q ss_pred cCccccccccCCC-ceeecCCCCCc
Q 037839 111 CCSICLADYRSSD-MLRLLPDCSHL 134 (177)
Q Consensus 111 ~C~ICl~~f~~~~-~v~~l~~C~H~ 134 (177)
.|+-|-.+|...+ .....|.|+|-
T Consensus 4 ~CP~C~seytY~dg~~~iCpeC~~E 28 (109)
T TIGR00686 4 PCPKCNSEYTYHDGTQLICPSCLYE 28 (109)
T ss_pred cCCcCCCcceEecCCeeECcccccc
Confidence 5999998887554 33444556664
No 283
>PHA03164 hypothetical protein; Provisional
Probab=31.58 E-value=36 Score=22.07 Aligned_cols=9 Identities=22% Similarity=0.309 Sum_probs=3.7
Q ss_pred HHHHHHHhh
Q 037839 37 TITLASYFC 45 (177)
Q Consensus 37 ~i~l~~~~~ 45 (177)
+++++.|.+
T Consensus 73 fiifvlyvF 81 (88)
T PHA03164 73 FIIFVLYVF 81 (88)
T ss_pred HHHHHHHhe
Confidence 334444443
No 284
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=31.43 E-value=40 Score=26.43 Aligned_cols=19 Identities=26% Similarity=0.536 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 037839 27 VSVGILILITTITLASYFC 45 (177)
Q Consensus 27 i~l~il~li~~i~l~~~~~ 45 (177)
++|+|++|+++++.+..|+
T Consensus 18 iaI~IV~lLIiiva~~lf~ 36 (217)
T PF07423_consen 18 IAIGIVSLLIIIVAYQLFF 36 (217)
T ss_pred HHHHHHHHHHHHHhhhhee
Confidence 3333333333333333333
No 285
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.53 E-value=43 Score=21.54 Aligned_cols=29 Identities=24% Similarity=0.620 Sum_probs=22.3
Q ss_pred CCcccHhhHHHHHhcCCCCcCCCCCCCCCCC
Q 037839 132 SHLFHVKCVDPWLRLHPTCPVCRTSPLPTPL 162 (177)
Q Consensus 132 ~H~fH~~Ci~~Wl~~~~~CP~CR~~~~~~~~ 162 (177)
.|-||.+|.+.-|. -.||.|-..+.-.+.
T Consensus 28 EcTFCadCae~~l~--g~CPnCGGelv~RP~ 56 (84)
T COG3813 28 ECTFCADCAENRLH--GLCPNCGGELVARPI 56 (84)
T ss_pred eeehhHhHHHHhhc--CcCCCCCchhhcCcC
Confidence 47899999987443 589999888776554
No 286
>PF15298 AJAP1_PANP_C: AJAP1/PANP C-terminus
Probab=29.92 E-value=33 Score=26.48 Aligned_cols=13 Identities=31% Similarity=0.284 Sum_probs=6.2
Q ss_pred HHHHHHhhccCcc
Q 037839 38 ITLASYFCTRGQQ 50 (177)
Q Consensus 38 i~l~~~~~~r~~~ 50 (177)
-.+++.+|..+..
T Consensus 117 TtlvlK~C~~~s~ 129 (205)
T PF15298_consen 117 TTLVLKNCCAQSQ 129 (205)
T ss_pred hhhhhhhhhhhhc
Confidence 3444555654433
No 287
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=29.91 E-value=17 Score=36.14 Aligned_cols=50 Identities=28% Similarity=0.586 Sum_probs=38.5
Q ss_pred CCcccCccccccccCCCceeecCCCCCcccHhhHHHHHhc----CCCCcCCCCCC
Q 037839 107 STATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRL----HPTCPVCRTSP 157 (177)
Q Consensus 107 ~~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~----~~~CP~CR~~~ 157 (177)
.....|.+|.......+.+...- |.-.||.-|+..-+.. ...||-||..-
T Consensus 1106 ~~~~~c~~cr~k~~~~~m~lc~~-c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~ 1159 (1404)
T KOG1245|consen 1106 AVNALCKVCRRKKQDEKMLLCDE-CLSGFHLFCLRPALSSVPPGDWMCPSCRKEH 1159 (1404)
T ss_pred cchhhhhhhhhcccchhhhhhHh-hhhhHHHHhhhhhhccCCcCCccCCccchhh
Confidence 34557999999988766655554 8888999999887754 45799998765
No 288
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=29.74 E-value=29 Score=31.63 Aligned_cols=26 Identities=38% Similarity=1.005 Sum_probs=20.7
Q ss_pred CCCCcccHhhHHHHHhc-----CCCCcCCCC
Q 037839 130 DCSHLFHVKCVDPWLRL-----HPTCPVCRT 155 (177)
Q Consensus 130 ~C~H~fH~~Ci~~Wl~~-----~~~CP~CR~ 155 (177)
+|+-.||..|...|+.. .+.||-||.
T Consensus 40 ~c~~~yH~~cvt~~~~~~~l~~gWrC~~crv 70 (694)
T KOG4443|consen 40 DCGQKYHPYCVTSWAQHAVLSGGWRCPSCRV 70 (694)
T ss_pred hhcccCCcchhhHHHhHHHhcCCcccCCcee
Confidence 48999999999999854 356888765
No 289
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=29.40 E-value=44 Score=26.42 Aligned_cols=25 Identities=24% Similarity=0.612 Sum_probs=17.7
Q ss_pred cHhhHHHHHhcCCCCcCCCCCCCCC
Q 037839 136 HVKCVDPWLRLHPTCPVCRTSPLPT 160 (177)
Q Consensus 136 H~~Ci~~Wl~~~~~CP~CR~~~~~~ 160 (177)
|..|...--++-..||+|++.-.+.
T Consensus 197 C~sC~qqIHRNAPiCPlCK~KsRSr 221 (230)
T PF10146_consen 197 CQSCHQQIHRNAPICPLCKAKSRSR 221 (230)
T ss_pred hHhHHHHHhcCCCCCcccccccccC
Confidence 5567666445566899999877664
No 290
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=29.24 E-value=1e+02 Score=19.54 Aligned_cols=11 Identities=18% Similarity=0.193 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q 037839 27 VSVGILILITT 37 (177)
Q Consensus 27 i~l~il~li~~ 37 (177)
++++|.++++.
T Consensus 6 iLi~ICVaii~ 16 (68)
T PF05961_consen 6 ILIIICVAIIG 16 (68)
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 291
>PF15168 TRIQK: Triple QxxK/R motif-containing protein family
Probab=29.19 E-value=76 Score=20.59 Aligned_cols=19 Identities=26% Similarity=0.305 Sum_probs=9.7
Q ss_pred hHHHHHHHHHHHHHHHHHh
Q 037839 26 GVSVGILILITTITLASYF 44 (177)
Q Consensus 26 ~i~l~il~li~~i~l~~~~ 44 (177)
.++.+++++++.++..||+
T Consensus 53 l~l~ail~lL~a~Ya~fyl 71 (79)
T PF15168_consen 53 LVLAAILVLLLAFYAFFYL 71 (79)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555555555554444443
No 292
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=28.97 E-value=79 Score=23.29 Aligned_cols=27 Identities=30% Similarity=0.258 Sum_probs=15.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHhhccCc
Q 037839 23 YGIGVSVGILILITTITLASYFCTRGQ 49 (177)
Q Consensus 23 ~~i~i~l~il~li~~i~l~~~~~~r~~ 49 (177)
+.|+|++.++++++++.+.....++..
T Consensus 34 ILiaIvVliiiiivli~lcssRKkKaa 60 (189)
T PF05568_consen 34 ILIAIVVLIIIIIVLIYLCSSRKKKAA 60 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 555666666666666666655444443
No 293
>PHA02692 hypothetical protein; Provisional
Probab=28.91 E-value=1.3e+02 Score=19.22 Aligned_cols=6 Identities=0% Similarity=-0.180 Sum_probs=2.5
Q ss_pred Cccchh
Q 037839 20 GFGYGI 25 (177)
Q Consensus 20 ~~~~~i 25 (177)
++.+.+
T Consensus 44 ~~~~~i 49 (70)
T PHA02692 44 PWTTVF 49 (70)
T ss_pred chHHHH
Confidence 444433
No 294
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.71 E-value=36 Score=24.39 Aligned_cols=24 Identities=29% Similarity=0.652 Sum_probs=16.6
Q ss_pred cccHhhHHHHHhcCCCCcCCCCCCCCC
Q 037839 134 LFHVKCVDPWLRLHPTCPVCRTSPLPT 160 (177)
Q Consensus 134 ~fH~~Ci~~Wl~~~~~CP~CR~~~~~~ 160 (177)
.||..|-..-+. +||.|.+++..+
T Consensus 29 afcskcgeati~---qcp~csasirgd 52 (160)
T COG4306 29 AFCSKCGEATIT---QCPICSASIRGD 52 (160)
T ss_pred HHHhhhchHHHh---cCCccCCccccc
Confidence 367777766544 599998887653
No 295
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=28.54 E-value=60 Score=20.66 Aligned_cols=15 Identities=40% Similarity=0.848 Sum_probs=6.7
Q ss_pred hHHHHHHHHHHHHHH
Q 037839 26 GVSVGILILITTITL 40 (177)
Q Consensus 26 ~i~l~il~li~~i~l 40 (177)
++++|+++++.++.+
T Consensus 52 G~v~Glii~~~~~~l 66 (70)
T PF04210_consen 52 GLVIGLIIFIIYIVL 66 (70)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444555444444333
No 296
>PF03988 DUF347: Repeat of Unknown Function (DUF347) ; InterPro: IPR007136 This repeat is found as four tandem repeats in a family of bacterial membrane proteins. Each repeat contains two transmembrane regions and a conserved tryptophan.
Probab=28.44 E-value=1.1e+02 Score=18.20 Aligned_cols=16 Identities=31% Similarity=0.401 Sum_probs=7.9
Q ss_pred CCccchhhHHHHHHHH
Q 037839 19 GGFGYGIGVSVGILIL 34 (177)
Q Consensus 19 ~~~~~~i~i~l~il~l 34 (177)
-+++|..+.++...++
T Consensus 25 lglg~~~~~~~~~~~l 40 (55)
T PF03988_consen 25 LGLGYLISTLIFAALL 40 (55)
T ss_pred cCccHHHHHHHHHHHH
Confidence 4566666444433333
No 297
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=28.24 E-value=46 Score=29.66 Aligned_cols=26 Identities=15% Similarity=0.379 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHhhccCcchh
Q 037839 27 VSVGILILITTITLASYFCTRGQQQQ 52 (177)
Q Consensus 27 i~l~il~li~~i~l~~~~~~r~~~~~ 52 (177)
++++++++++.++.+.|+++++....
T Consensus 4 liv~llVilv~~~~~g~~lRkk~~~r 29 (570)
T COG4477 4 LIVALLVILVAAYAVGYLLRKKNYQR 29 (570)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 45555566566666666666665443
No 298
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.22 E-value=30 Score=23.28 Aligned_cols=12 Identities=33% Similarity=0.930 Sum_probs=10.6
Q ss_pred ccHhhHHHHHhc
Q 037839 135 FHVKCVDPWLRL 146 (177)
Q Consensus 135 fH~~Ci~~Wl~~ 146 (177)
||..|+..|+..
T Consensus 43 FCRNCLs~Wy~e 54 (104)
T COG3492 43 FCRNCLSNWYRE 54 (104)
T ss_pred HHHHHHHHHHHH
Confidence 999999999854
No 299
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=28.11 E-value=30 Score=17.38 Aligned_cols=9 Identities=44% Similarity=1.073 Sum_probs=7.2
Q ss_pred CCcCCCCCC
Q 037839 149 TCPVCRTSP 157 (177)
Q Consensus 149 ~CP~CR~~~ 157 (177)
.||+|.+.+
T Consensus 3 ~CPiC~~~v 11 (26)
T smart00734 3 QCPVCFREV 11 (26)
T ss_pred cCCCCcCcc
Confidence 589997776
No 300
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=27.76 E-value=39 Score=21.93 Aligned_cols=33 Identities=30% Similarity=0.450 Sum_probs=21.4
Q ss_pred cccCccccccccCCCceeecCCCCCcccHhhHHH
Q 037839 109 ATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDP 142 (177)
Q Consensus 109 ~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~ 142 (177)
...|.+|-...-..-.+..- .|.-.||..|...
T Consensus 36 ~~~C~~C~~~~Ga~i~C~~~-~C~~~fH~~CA~~ 68 (90)
T PF13771_consen 36 KLKCSICKKKGGACIGCSHP-GCSRSFHVPCARK 68 (90)
T ss_pred CCCCcCCCCCCCeEEEEeCC-CCCcEEChHHHcc
Confidence 34699998762222233233 4999999999854
No 301
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=27.75 E-value=44 Score=26.50 Aligned_cols=27 Identities=22% Similarity=0.598 Sum_probs=18.6
Q ss_pred ccHhhHHHHHhcCCCCcCCCCCCCCCC
Q 037839 135 FHVKCVDPWLRLHPTCPVCRTSPLPTP 161 (177)
Q Consensus 135 fH~~Ci~~Wl~~~~~CP~CR~~~~~~~ 161 (177)
-|..|...--++-..||+|++.-.+.+
T Consensus 251 ~ClsChqqIHRNAPiCPlCKaKsRSrN 277 (286)
T KOG4451|consen 251 VCLSCHQQIHRNAPICPLCKAKSRSRN 277 (286)
T ss_pred HHHHHHHHHhcCCCCCcchhhccccCC
Confidence 345666665556679999998776643
No 302
>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]
Probab=26.92 E-value=1.3e+02 Score=26.75 Aligned_cols=11 Identities=9% Similarity=0.184 Sum_probs=6.9
Q ss_pred HhhHHHHHhcC
Q 037839 137 VKCVDPWLRLH 147 (177)
Q Consensus 137 ~~Ci~~Wl~~~ 147 (177)
..++..||+.+
T Consensus 292 kGsL~dyL~~n 302 (534)
T KOG3653|consen 292 KGSLCDYLKAN 302 (534)
T ss_pred CCcHHHHHHhc
Confidence 44777777653
No 303
>PRK10220 hypothetical protein; Provisional
Probab=26.47 E-value=49 Score=23.04 Aligned_cols=24 Identities=29% Similarity=0.782 Sum_probs=14.9
Q ss_pred cCccccccccCCC-ceeecCCCCCc
Q 037839 111 CCSICLADYRSSD-MLRLLPDCSHL 134 (177)
Q Consensus 111 ~C~ICl~~f~~~~-~v~~l~~C~H~ 134 (177)
.|+-|-.+|...+ ...+-|.|+|-
T Consensus 5 ~CP~C~seytY~d~~~~vCpeC~hE 29 (111)
T PRK10220 5 HCPKCNSEYTYEDNGMYICPECAHE 29 (111)
T ss_pred cCCCCCCcceEcCCCeEECCcccCc
Confidence 5888888887554 33344446653
No 304
>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]
Probab=25.82 E-value=88 Score=28.69 Aligned_cols=7 Identities=0% Similarity=-0.292 Sum_probs=2.8
Q ss_pred CCCCCCC
Q 037839 6 VKASDGF 12 (177)
Q Consensus 6 ~~~~~~~ 12 (177)
+.|.+|.
T Consensus 374 P~s~~~~ 380 (807)
T KOG1094|consen 374 PESRGYQ 380 (807)
T ss_pred CCccccc
Confidence 3334443
No 305
>PF15106 TMEM156: TMEM156 protein family
Probab=25.81 E-value=86 Score=24.53 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHhhccCcc
Q 037839 28 SVGILILITTITLASYFCTRGQQ 50 (177)
Q Consensus 28 ~l~il~li~~i~l~~~~~~r~~~ 50 (177)
++.+++++.++++++|......+
T Consensus 180 vLVllVfiflii~iI~KIle~hr 202 (226)
T PF15106_consen 180 VLVLLVFIFLIILIIYKILEGHR 202 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Confidence 33334444455555555544444
No 306
>COG4325 Predicted membrane protein [Function unknown]
Probab=25.68 E-value=96 Score=26.71 Aligned_cols=35 Identities=26% Similarity=0.351 Sum_probs=27.0
Q ss_pred CCCCCCccchhhHHHHHHHHHHHHHHHHHhhccCc
Q 037839 15 SSNIGGFGYGIGVSVGILILITTITLASYFCTRGQ 49 (177)
Q Consensus 15 ~~~~~~~~~~i~i~l~il~li~~i~l~~~~~~r~~ 49 (177)
.++.++|.-.+++.+++++++..+.+.+||.+.-.
T Consensus 151 ~d~~g~FIp~~avtv~lLlaiisig~~iyfl~~l~ 185 (464)
T COG4325 151 RDGQGAFIPKVAVTVSLLLAIISIGALIYFLHHLM 185 (464)
T ss_pred cCccccceehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44557788888899999998888888888876544
No 307
>PF02060 ISK_Channel: Slow voltage-gated potassium channel; InterPro: IPR000369 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Two types of beta subunit (KCNE and KCNAB) are presently known to associate with voltage-gated alpha subunits (Kv, KCNQ and eag-like). However, not all combinations of alpha and beta subunits are possible. The KCNE family of K+ channel subunits are membrane glycoproteins that possess a single transmembrane (TM) domain. They share no structural relationship with the alpha subunit proteins, which possess pore forming domains. The subunits appear to have a regulatory function, modulating the kinetics and voltage dependence of the alpha subunits of voltage-dependent K+ channels. KCNE subunits are formed from short polypeptides of ~130 amino acids, and are divided into five subfamilies: KCNE1 (MinK/IsK), KCNE2 (MiRP1), KCNE3 (MiRP2), KCNE4 (MiRP3) and KCNE1L (AMMECR2). ; GO: 0005249 voltage-gated potassium channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2K21_A.
Probab=25.57 E-value=88 Score=22.39 Aligned_cols=27 Identities=22% Similarity=0.239 Sum_probs=14.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHhhccCc
Q 037839 23 YGIGVSVGILILITTITLASYFCTRGQ 49 (177)
Q Consensus 23 ~~i~i~l~il~li~~i~l~~~~~~r~~ 49 (177)
+.|.+++|+..++++-+++.|...+++
T Consensus 45 lYIL~vmgfFgff~~gImlsyvRSKK~ 71 (129)
T PF02060_consen 45 LYILVVMGFFGFFTVGIMLSYVRSKKR 71 (129)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344455666666565556666544443
No 308
>COG2991 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.55 E-value=1e+02 Score=19.88 Aligned_cols=27 Identities=19% Similarity=0.303 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhccCcchh
Q 037839 26 GVSVGILILITTITLASYFCTRGQQQQ 52 (177)
Q Consensus 26 ~i~l~il~li~~i~l~~~~~~r~~~~~ 52 (177)
.+.++++++++....+-|++.|+....
T Consensus 5 lltFg~Fllvi~gMsiG~I~krk~I~G 31 (77)
T COG2991 5 LLTFGIFLLVIAGMSIGYIFKRKSIKG 31 (77)
T ss_pred HHHHHHHHHHHHHHhHhhheecccccc
Confidence 345555555555555667677665443
No 309
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=25.46 E-value=26 Score=19.48 Aligned_cols=14 Identities=43% Similarity=0.857 Sum_probs=9.9
Q ss_pred CCcCCCCCCCCCCC
Q 037839 149 TCPVCRTSPLPTPL 162 (177)
Q Consensus 149 ~CP~CR~~~~~~~~ 162 (177)
.||.|+..+....+
T Consensus 1 ~CP~C~~~l~~~~~ 14 (41)
T PF13453_consen 1 KCPRCGTELEPVRL 14 (41)
T ss_pred CcCCCCcccceEEE
Confidence 49999887765443
No 310
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=25.33 E-value=35 Score=31.50 Aligned_cols=33 Identities=30% Similarity=0.714 Sum_probs=24.6
Q ss_pred eeecCCCCCcccHhhHHHHHhcCCCCcCCCCCC
Q 037839 125 LRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSP 157 (177)
Q Consensus 125 v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~ 157 (177)
+...|.|.-+||.+=++.-..++-.||.||.+.
T Consensus 1044 it~Cp~C~~~F~~eDFEl~vLqKGHCPFCrTS~ 1076 (1081)
T KOG1538|consen 1044 ITMCPSCFQMFHSEDFELLVLQKGHCPFCRTSK 1076 (1081)
T ss_pred hhhCchHHhhhccchhhHHHHhcCCCCcccccc
Confidence 444455777888777777677778999999865
No 311
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=25.28 E-value=1.3e+02 Score=20.37 Aligned_cols=25 Identities=16% Similarity=0.297 Sum_probs=13.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHhhcc
Q 037839 23 YGIGVSVGILILITTITLASYFCTR 47 (177)
Q Consensus 23 ~~i~i~l~il~li~~i~l~~~~~~r 47 (177)
-.++|++++.++++++.+++.-..+
T Consensus 50 RN~GIli~f~i~f~~~~~~~~e~~~ 74 (103)
T PF06422_consen 50 RNFGILIAFWIFFIVLTLLATEFIK 74 (103)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455666666665555555443333
No 312
>PF14914 LRRC37AB_C: LRRC37A/B like protein 1 C-terminal domain
Probab=25.26 E-value=94 Score=22.91 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=10.7
Q ss_pred CCCCCc-cchhhHHHHHHHHHHHHHH
Q 037839 16 SNIGGF-GYGIGVSVGILILITTITL 40 (177)
Q Consensus 16 ~~~~~~-~~~i~i~l~il~li~~i~l 40 (177)
.+-++. +..+++.+.+++.++++++
T Consensus 113 p~~gY~nklilaisvtvv~~iliii~ 138 (154)
T PF14914_consen 113 PGYGYNNKLILAISVTVVVMILIIIF 138 (154)
T ss_pred ccccccchhHHHHHHHHHHHHHHHHH
Confidence 333333 4455555444444333333
No 313
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=24.98 E-value=62 Score=19.87 Aligned_cols=33 Identities=15% Similarity=0.304 Sum_probs=22.3
Q ss_pred ccCccccccccC--CCceeecCCCCCcccHhhHHH
Q 037839 110 TCCSICLADYRS--SDMLRLLPDCSHLFHVKCVDP 142 (177)
Q Consensus 110 ~~C~ICl~~f~~--~~~v~~l~~C~H~fH~~Ci~~ 142 (177)
..|+.|-..... ......-+.||+.+|.|--..
T Consensus 29 q~C~~CG~~~~~~~~~r~~~C~~Cg~~~~rD~naA 63 (69)
T PF07282_consen 29 QTCPRCGHRNKKRRSGRVFTCPNCGFEMDRDVNAA 63 (69)
T ss_pred cCccCcccccccccccceEEcCCCCCEECcHHHHH
Confidence 359999887766 344555556888888775544
No 314
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=24.51 E-value=25 Score=18.51 Aligned_cols=24 Identities=33% Similarity=0.818 Sum_probs=8.8
Q ss_pred cCccccccccCCC-ceeecCCCCCc
Q 037839 111 CCSICLADYRSSD-MLRLLPDCSHL 134 (177)
Q Consensus 111 ~C~ICl~~f~~~~-~v~~l~~C~H~ 134 (177)
.|+-|-.++...| .+.+-|.|+|.
T Consensus 4 ~Cp~C~se~~y~D~~~~vCp~C~~e 28 (30)
T PF08274_consen 4 KCPLCGSEYTYEDGELLVCPECGHE 28 (30)
T ss_dssp --TTT-----EE-SSSEEETTTTEE
T ss_pred CCCCCCCcceeccCCEEeCCccccc
Confidence 4777777765433 33444556664
No 315
>PRK05978 hypothetical protein; Provisional
Probab=24.34 E-value=50 Score=24.31 Aligned_cols=25 Identities=20% Similarity=0.445 Sum_probs=19.6
Q ss_pred CCcccHhhHHHHHhcCCCCcCCCCCCCCCC
Q 037839 132 SHLFHVKCVDPWLRLHPTCPVCRTSPLPTP 161 (177)
Q Consensus 132 ~H~fH~~Ci~~Wl~~~~~CP~CR~~~~~~~ 161 (177)
||+|+ .+++-+..||.|-.++...+
T Consensus 42 G~LF~-----g~Lkv~~~C~~CG~~~~~~~ 66 (148)
T PRK05978 42 GKLFR-----AFLKPVDHCAACGEDFTHHR 66 (148)
T ss_pred Ccccc-----cccccCCCccccCCccccCC
Confidence 47775 77888899999998887643
No 316
>KOG2952 consensus Cell cycle control protein [Cell cycle control, cell division, chromosome partitioning; Transcription; Signal transduction mechanisms]
Probab=24.31 E-value=1e+02 Score=26.01 Aligned_cols=38 Identities=24% Similarity=0.280 Sum_probs=16.2
Q ss_pred CCCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHhhccCc
Q 037839 10 DGFLGSSNIGGFGYGIGVSVGILILITTITLASYFCTRGQ 49 (177)
Q Consensus 10 ~~~~~~~~~~~~~~~i~i~l~il~li~~i~l~~~~~~r~~ 49 (177)
++..+-...-|+.|.+ +-++.+++.++++++++...++
T Consensus 302 SwlGgkN~FLgI~YLv--VG~ic~~l~~~f~~~~l~~~r~ 339 (351)
T KOG2952|consen 302 SWLGGKNPFLGIAYLV--VGSICILLGLIFLVIYLFKPRR 339 (351)
T ss_pred cccccCCccceehHHH--HHHHHHHHHHHHHHHHhhcccc
Confidence 3333433333444444 3333444444445555444443
No 317
>PRK01343 zinc-binding protein; Provisional
Probab=24.19 E-value=49 Score=20.24 Aligned_cols=13 Identities=23% Similarity=0.649 Sum_probs=9.8
Q ss_pred CCCCcCCCCCCCC
Q 037839 147 HPTCPVCRTSPLP 159 (177)
Q Consensus 147 ~~~CP~CR~~~~~ 159 (177)
...||+|++++..
T Consensus 9 ~~~CP~C~k~~~~ 21 (57)
T PRK01343 9 TRPCPECGKPSTR 21 (57)
T ss_pred CCcCCCCCCcCcC
Confidence 3579999998753
No 318
>PHA03030 hypothetical protein; Provisional
Probab=23.92 E-value=76 Score=21.86 Aligned_cols=8 Identities=0% Similarity=0.206 Sum_probs=3.4
Q ss_pred HHHHhhcc
Q 037839 40 LASYFCTR 47 (177)
Q Consensus 40 l~~~~~~r 47 (177)
+++||.+-
T Consensus 16 ~iffYI~~ 23 (122)
T PHA03030 16 FIFFYIRI 23 (122)
T ss_pred HHHHHhee
Confidence 34444443
No 319
>PF08391 Ly49: Ly49-like protein, N-terminal region; InterPro: IPR013600 The sequences making up this entry are annotated as, or are similar to, Ly49 receptors (e.g. P20937 from SWISSPROT). These are type II transmembrane receptors expressed by mouse natural killer (NK) cells. They are classified as being activating (e.g.Ly49D and H) or inhibitory (e.g. Ly49A and G), depending on their effect on NK cell function []. They are members of the C-type lectin receptor superfamily [], and in fact in many family members this region is found immediately N-terminal to a lectin C-type domain (IPR001304 from INTERPRO). ; PDB: 1QO3_D 3C8J_D 1P4L_D 3C8K_D 3G8K_B 1JA3_B 3CAD_A 3G8L_A.
Probab=23.83 E-value=26 Score=24.79 Aligned_cols=19 Identities=42% Similarity=0.578 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 037839 24 GIGVSVGILILITTITLAS 42 (177)
Q Consensus 24 ~i~i~l~il~li~~i~l~~ 42 (177)
.|++++||+.+++++.+++
T Consensus 6 liav~LGILCllLLvtv~v 24 (119)
T PF08391_consen 6 LIAVALGILCLLLLVTVAV 24 (119)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566777766665555443
No 320
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=23.72 E-value=51 Score=28.89 Aligned_cols=50 Identities=22% Similarity=0.561 Sum_probs=31.1
Q ss_pred cccCcccccccc-CCCceeecCCCCCcccHhhHHHHHhc--------CCCCcCCCCCCC
Q 037839 109 ATCCSICLADYR-SSDMLRLLPDCSHLFHVKCVDPWLRL--------HPTCPVCRTSPL 158 (177)
Q Consensus 109 ~~~C~ICl~~f~-~~~~v~~l~~C~H~fH~~Ci~~Wl~~--------~~~CP~CR~~~~ 158 (177)
...|.+|..... .++.+.....|+-.||..|....... ...|-+|..-.-
T Consensus 168 n~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~~~ 226 (464)
T KOG4323|consen 168 NLQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRGPK 226 (464)
T ss_pred cceeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccchh
Confidence 445999996543 33333333358888999998664322 236888876443
No 321
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=23.71 E-value=32 Score=18.83 Aligned_cols=27 Identities=22% Similarity=0.764 Sum_probs=15.3
Q ss_pred CCCCCcccHhhHHHHHhcCCCCcCCCCCC
Q 037839 129 PDCSHLFHVKCVDPWLRLHPTCPVCRTSP 157 (177)
Q Consensus 129 ~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~ 157 (177)
+.||++||..=--. +....|..|-.+|
T Consensus 5 ~~Cg~~Yh~~~~pP--~~~~~Cd~cg~~L 31 (36)
T PF05191_consen 5 PKCGRIYHIEFNPP--KVEGVCDNCGGEL 31 (36)
T ss_dssp TTTTEEEETTTB----SSTTBCTTTTEBE
T ss_pred CCCCCccccccCCC--CCCCccCCCCCee
Confidence 45999999431111 2334687776654
No 322
>PF06750 DiS_P_DiS: Bacterial Peptidase A24 N-terminal domain; InterPro: IPR010627 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This domain is found at the N terminus of bacterial aspartic peptidases belonging to MEROPS peptidase family A24 (clan AD), subfamily A24A (type IV prepilin peptidase, IPR000045 from INTERPRO). It's function has not been specifically determined; however some of the family have been characterised as bifunctional [], and this domain may contain the N-methylation activity. The domain consists of an intracellular region between a pair of transmembrane domains. This intracellular region contains an invariant proline and four conserved cysteines. These Cys residues are arranged in a two-pair motif, with the Cys residues of a pair separated (usually) by 2 aa and with each pair separated by 21 largely hydrophilic residues (C-X-X-C...X21...C-X-X-C); they have been shown to be essential to the overall function of the enzyme [, ]. The bifunctional enzyme prepilin peptidase (PilD) from Pseudomonas aeruginosa is a key determinant in both type-IV pilus biogenesis and extracellular protein secretion, in its roles as a leader peptidase and methyl transferase (MTase). It is responsible for endopeptidic cleavage of the unique leader peptides that characterise type-IV pilin precursors, as well as proteins with homologous leader sequences that are essential components of the general secretion pathway found in a variety of Gram-negative pathogens. Following removal of the leader peptides, the same enzyme is responsible for the second posttranslational modification that characterises the type-IV pilins and their homologues, namely N-methylation of the newly exposed N-terminal amino acid residue [].
Probab=23.67 E-value=1.1e+02 Score=20.42 Aligned_cols=37 Identities=27% Similarity=0.538 Sum_probs=27.3
Q ss_pred ccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCCC
Q 037839 110 TCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPLP 159 (177)
Q Consensus 110 ~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~~ 159 (177)
..|.-|...+.--| ..| +-.|+..+-.|..|++++..
T Consensus 34 S~C~~C~~~L~~~~---lIP----------i~S~l~lrGrCr~C~~~I~~ 70 (92)
T PF06750_consen 34 SHCPHCGHPLSWWD---LIP----------ILSYLLLRGRCRYCGAPIPP 70 (92)
T ss_pred CcCcCCCCcCcccc---cch----------HHHHHHhCCCCcccCCCCCh
Confidence 45887777665443 334 78999989999999998854
No 323
>PF00974 Rhabdo_glycop: Rhabdovirus spike glycoprotein; InterPro: IPR001903 Different families of ssRNA negative-strand viruses contain glycoproteins responsible for forming spikes on the surface of the virion. The glycoprotein spike is made up of a trimer of glycoproteins. These proteins are frequently abbreviated to G protein. Channel formed by glycoprotein spike is thought to function in a similar manner to Influenza virus M2 protein channel, thus allowing a signal to pass across the viral membrane to signal for viral uncoating [, ].; GO: 0019031 viral envelope; PDB: 2CMZ_C 2J6J_A 3EGD_D.
Probab=23.54 E-value=27 Score=30.91 Aligned_cols=29 Identities=21% Similarity=0.326 Sum_probs=0.0
Q ss_pred CccchhhHHHHHHHHHHHHHHHHHhhccC
Q 037839 20 GFGYGIGVSVGILILITTITLASYFCTRG 48 (177)
Q Consensus 20 ~~~~~i~i~l~il~li~~i~l~~~~~~r~ 48 (177)
+|+..+.++++++++++++++++..|.+.
T Consensus 450 ~W~~~~~~~~~~vi~~illi~l~~cc~~~ 478 (501)
T PF00974_consen 450 NWGEWLSIIAIAVILLILLILLIRCCCRC 478 (501)
T ss_dssp -----------------------------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 35544444443444444444444444444
No 324
>PHA03029 hypothetical protein; Provisional
Probab=23.43 E-value=54 Score=21.24 Aligned_cols=28 Identities=14% Similarity=0.085 Sum_probs=14.6
Q ss_pred CCccchhhHHHHHHHHHHHHHHHHHhhc
Q 037839 19 GGFGYGIGVSVGILILITTITLASYFCT 46 (177)
Q Consensus 19 ~~~~~~i~i~l~il~li~~i~l~~~~~~ 46 (177)
+-..+.+++++-+++++..+.+++=|..
T Consensus 5 ei~~~ii~~iiyiilila~igiiwg~ll 32 (92)
T PHA03029 5 EIVFLIIAIIIYIILILAIIGIIWGFLL 32 (92)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555544433
No 325
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=23.23 E-value=35 Score=27.70 Aligned_cols=48 Identities=33% Similarity=0.663 Sum_probs=27.6
Q ss_pred CcccCccccccccC-CC---cee--ecC----CCCCcccHhhHHHHHhc----------CCCCcCCCCCCCC
Q 037839 108 TATCCSICLADYRS-SD---MLR--LLP----DCSHLFHVKCVDPWLRL----------HPTCPVCRTSPLP 159 (177)
Q Consensus 108 ~~~~C~ICl~~f~~-~~---~v~--~l~----~C~H~fH~~Ci~~Wl~~----------~~~CP~CR~~~~~ 159 (177)
....|.+|=..|.. +. .++ .|+ .||-.|. ..||.+ ...||.|.+.+-.
T Consensus 160 ka~~C~~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFS----RPWLLQGHiRTHTGEKPF~C~hC~kAFAD 227 (279)
T KOG2462|consen 160 KAFSCKYCGKVYVSMPALKMHIRTHTLPCECGICGKAFS----RPWLLQGHIRTHTGEKPFSCPHCGKAFAD 227 (279)
T ss_pred ccccCCCCCceeeehHHHhhHhhccCCCccccccccccc----chHHhhcccccccCCCCccCCcccchhcc
Confidence 34579999888752 11 111 122 2555553 578743 2479999887643
No 326
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=23.10 E-value=99 Score=20.11 Aligned_cols=16 Identities=38% Similarity=0.814 Sum_probs=7.4
Q ss_pred hHHHHHHHHHHHHHHH
Q 037839 26 GVSVGILILITTITLA 41 (177)
Q Consensus 26 ~i~l~il~li~~i~l~ 41 (177)
++++|+++++++..+.
T Consensus 55 G~viGlli~~i~~~~~ 70 (77)
T PRK01026 55 GLVIGLLIVLVYIILS 70 (77)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555544444333
No 327
>PF11241 DUF3043: Protein of unknown function (DUF3043); InterPro: IPR021403 Some members in this family of proteins with unknown function are annotated as membrane proteins. This cannot be confirmed.
Probab=22.95 E-value=60 Score=24.47 Aligned_cols=33 Identities=21% Similarity=0.268 Sum_probs=19.9
Q ss_pred CCCCCCC--CCCCCCCCCCCCccchhhHHHHHHHH
Q 037839 2 NETTVKA--SDGFLGSSNIGGFGYGIGVSVGILIL 34 (177)
Q Consensus 2 ~~~~~~~--~~~~~~~~~~~~~~~~i~i~l~il~l 34 (177)
|.|++.- .||.+.--|++.+.+-+++++.++.+
T Consensus 59 DrGP~Rr~vRD~VDsR~~i~e~fmP~alv~lv~~~ 93 (170)
T PF11241_consen 59 DRGPVRRYVRDYVDSRRNIGEFFMPVALVLLVLSF 93 (170)
T ss_pred cccchhhhhhhhhhcccchHHHHHHHHHHHHHHHH
Confidence 4555555 67777777777777655444443333
No 328
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=22.91 E-value=50 Score=28.71 Aligned_cols=31 Identities=23% Similarity=0.578 Sum_probs=19.4
Q ss_pred ccCccccccccCCC----ceeecCCCCCcccHhhHHH
Q 037839 110 TCCSICLADYRSSD----MLRLLPDCSHLFHVKCVDP 142 (177)
Q Consensus 110 ~~C~ICl~~f~~~~----~v~~l~~C~H~fH~~Ci~~ 142 (177)
-.|.||.. |.... .+..- .|||+-|.+|..+
T Consensus 129 C~C~iC~k-fD~~~n~~~Wi~Cd-~CgH~cH~dCALr 163 (446)
T PF07227_consen 129 CMCCICSK-FDDNKNTCSWIGCD-VCGHWCHLDCALR 163 (446)
T ss_pred CCccccCC-cccCCCCeeEEecc-CCCceehhhhhcc
Confidence 35788855 54322 23222 3999999999844
No 329
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=22.89 E-value=59 Score=25.88 Aligned_cols=25 Identities=20% Similarity=0.436 Sum_probs=17.9
Q ss_pred ccCccccccccCCCceeecCCCCCcc
Q 037839 110 TCCSICLADYRSSDMLRLLPDCSHLF 135 (177)
Q Consensus 110 ~~C~ICl~~f~~~~~v~~l~~C~H~f 135 (177)
..|++|-..+...+.-.... .||.|
T Consensus 3 ~~CP~C~~~l~~~~~~~~C~-~~h~f 27 (272)
T PRK11088 3 YQCPLCHQPLTLEENSWICP-QNHQF 27 (272)
T ss_pred ccCCCCCcchhcCCCEEEcC-CCCCC
Confidence 36999999997655544444 67887
No 330
>PF00737 PsbH: Photosystem II 10 kDa phosphoprotein; InterPro: IPR001056 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight phosphoprotein PsbH found in PSII. The phosphorylation site of PsbH is located in the N terminus, where reversible phosphorylation is light-dependent and redox-controlled. PsbH is necessary for the photoprotection of PSII, being required for: (1) the rapid degradation of photodamaged D1 core protein to prevent further oxidative damage to the PSII core, and (2) the insertion of newly synthesised D1 protein into the thylakoid membrane []. PsbH may also regulate the transfer of electrons from D2 (Qa) to D1 (Qb) in the reaction core.; GO: 0042301 phosphate ion binding, 0015979 photosynthesis, 0050821 protein stabilization, 0009523 photosystem II, 0016020 membrane; PDB: 3PRR_H 2AXT_h 3BZ2_H 3BZ1_H 4FBY_W 3PRQ_H 3KZI_H 1S5L_h 3A0H_H 3ARC_H ....
Probab=22.80 E-value=1.8e+02 Score=17.36 Aligned_cols=27 Identities=11% Similarity=0.119 Sum_probs=14.4
Q ss_pred CCCCCCccchhhHHHHHHHHHHHHHHH
Q 037839 15 SSNIGGFGYGIGVSVGILILITTITLA 41 (177)
Q Consensus 15 ~~~~~~~~~~i~i~l~il~li~~i~l~ 41 (177)
+.-.+||+..-.+.+...++.++++++
T Consensus 16 GkVaPGWGTtplM~~~m~lf~vfl~ii 42 (52)
T PF00737_consen 16 GKVAPGWGTTPLMGVFMALFAVFLLII 42 (52)
T ss_dssp T--BSTTTTHHHHHHHHHHHHHHHHHH
T ss_pred CCcCCCccchHHHHHHHHHHHHHHHHH
Confidence 556678887665555554444444443
No 331
>CHL00066 psbH photosystem II protein H
Probab=22.71 E-value=2.2e+02 Score=18.27 Aligned_cols=27 Identities=11% Similarity=0.224 Sum_probs=14.4
Q ss_pred CCCCCCccchhhHHHHHHHHHHHHHHH
Q 037839 15 SSNIGGFGYGIGVSVGILILITTITLA 41 (177)
Q Consensus 15 ~~~~~~~~~~i~i~l~il~li~~i~l~ 41 (177)
+.-.+||+....+.+...++.++++++
T Consensus 31 GkvapgWGTtp~Mgv~m~lf~vfl~ii 57 (73)
T CHL00066 31 GKVAPGWGTTPLMGVAMALFAVFLSII 57 (73)
T ss_pred CcccCCccchHHHHHHHHHHHHHHHHH
Confidence 444567886665555544444444443
No 332
>PF11337 DUF3139: Protein of unknown function (DUF3139); InterPro: IPR021486 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=22.59 E-value=1.2e+02 Score=19.67 Aligned_cols=9 Identities=67% Similarity=0.826 Sum_probs=3.8
Q ss_pred CCCHHHHhh
Q 037839 83 GLDESTIKS 91 (177)
Q Consensus 83 ~l~~~~~~~ 91 (177)
|..++.+++
T Consensus 48 gy~e~~I~~ 56 (85)
T PF11337_consen 48 GYKESDIKS 56 (85)
T ss_pred CCcHHHhhh
Confidence 344444433
No 333
>PRK01741 cell division protein ZipA; Provisional
Probab=22.48 E-value=85 Score=26.27 Aligned_cols=19 Identities=26% Similarity=0.483 Sum_probs=10.1
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 037839 25 IGVSVGILILITTITLASY 43 (177)
Q Consensus 25 i~i~l~il~li~~i~l~~~ 43 (177)
|.|+||++++++++..-+|
T Consensus 6 iliILg~lal~~Lv~hgiW 24 (332)
T PRK01741 6 ILIILGILALVALVAHGIW 24 (332)
T ss_pred hHHHHHHHHHHHHHHhhhh
Confidence 4556666665555444443
No 334
>KOG1140 consensus N-end rule pathway, recognition component UBR1 [Posttranslational modification, protein turnover, chaperones]
Probab=22.31 E-value=45 Score=33.89 Aligned_cols=15 Identities=27% Similarity=0.888 Sum_probs=13.6
Q ss_pred CCCcccHhhHHHHHh
Q 037839 131 CSHLFHVKCVDPWLR 145 (177)
Q Consensus 131 C~H~fH~~Ci~~Wl~ 145 (177)
|||..|..|....++
T Consensus 1151 c~h~mh~~c~~~~~~ 1165 (1738)
T KOG1140|consen 1151 CGHHMHYGCFKRYVQ 1165 (1738)
T ss_pred cCCcchHHHHHHHHH
Confidence 999999999988874
No 335
>PRK13275 mtrF tetrahydromethanopterin S-methyltransferase subunit F; Provisional
Probab=22.21 E-value=66 Score=20.36 Aligned_cols=17 Identities=24% Similarity=0.759 Sum_probs=7.5
Q ss_pred ccchhhHHHHHHHHHHH
Q 037839 21 FGYGIGVSVGILILITT 37 (177)
Q Consensus 21 ~~~~i~i~l~il~li~~ 37 (177)
.++.++.+++++++++.
T Consensus 43 ~G~aiG~~~AlvLv~ip 59 (67)
T PRK13275 43 IGFAIGFLLALLLVVVP 59 (67)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444333
No 336
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=22.07 E-value=30 Score=30.10 Aligned_cols=37 Identities=14% Similarity=0.142 Sum_probs=0.0
Q ss_pred CCCCCccchhhHHHHHHHHHHHHHHHHHhhccCcchh
Q 037839 16 SNIGGFGYGIGVSVGILILITTITLASYFCTRGQQQQ 52 (177)
Q Consensus 16 ~~~~~~~~~i~i~l~il~li~~i~l~~~~~~r~~~~~ 52 (177)
+...-+..+++.++++++++.++.++..+++++++..
T Consensus 349 ~~~~~~l~vVlgvavlivVv~viv~vc~~~rrrR~~~ 385 (439)
T PF02480_consen 349 SRGAALLGVVLGVAVLIVVVGVIVWVCLRCRRRRRQR 385 (439)
T ss_dssp -------------------------------------
T ss_pred CcccchHHHHHHHHHHHHHHHHHhheeeeehhccccc
Confidence 3344444444333333344444444444455554444
No 337
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=22.05 E-value=1.1e+02 Score=22.96 Aligned_cols=9 Identities=22% Similarity=0.567 Sum_probs=3.4
Q ss_pred HHHHHHHHh
Q 037839 36 TTITLASYF 44 (177)
Q Consensus 36 ~~i~l~~~~ 44 (177)
++++++.||
T Consensus 36 ill~lL~~f 44 (184)
T CHL00019 36 VVLGVLIYF 44 (184)
T ss_pred HHHHHHHHH
Confidence 333333343
No 338
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=21.99 E-value=56 Score=16.82 Aligned_cols=28 Identities=21% Similarity=0.629 Sum_probs=15.8
Q ss_pred cCccccccccCCCceeecCCCCCcccHhh
Q 037839 111 CCSICLADYRSSDMLRLLPDCSHLFHVKC 139 (177)
Q Consensus 111 ~C~ICl~~f~~~~~v~~l~~C~H~fH~~C 139 (177)
.|.+|-++..... ...-..|...+|..|
T Consensus 2 ~C~~C~~~~~~~~-~Y~C~~c~f~lh~~C 29 (30)
T PF03107_consen 2 WCDVCRRKIDGFY-FYHCSECCFTLHVRC 29 (30)
T ss_pred CCCCCCCCcCCCE-eEEeCCCCCeEcCcc
Confidence 4778866654432 222233666677766
No 339
>PLN00055 photosystem II reaction center protein H; Provisional
Probab=21.75 E-value=2.3e+02 Score=18.18 Aligned_cols=27 Identities=11% Similarity=0.224 Sum_probs=14.6
Q ss_pred CCCCCCccchhhHHHHHHHHHHHHHHH
Q 037839 15 SSNIGGFGYGIGVSVGILILITTITLA 41 (177)
Q Consensus 15 ~~~~~~~~~~i~i~l~il~li~~i~l~ 41 (177)
+.-.+||+....+.+...++.++++++
T Consensus 31 GkvapgWGTtp~Mg~~m~lf~vfl~ii 57 (73)
T PLN00055 31 GKVAPGWGTTPLMGVAMALFAVFLSII 57 (73)
T ss_pred CcccCCccchhHHHHHHHHHHHHHHHH
Confidence 445568886665555544444444443
No 340
>PF15106 TMEM156: TMEM156 protein family
Probab=21.74 E-value=89 Score=24.47 Aligned_cols=28 Identities=25% Similarity=0.108 Sum_probs=13.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHhhccCcc
Q 037839 23 YGIGVSVGILILITTITLASYFCTRGQQ 50 (177)
Q Consensus 23 ~~i~i~l~il~li~~i~l~~~~~~r~~~ 50 (177)
|.+++++.+++++++|.=++---+|.+.
T Consensus 179 YvLVllVfiflii~iI~KIle~hrrvqk 206 (226)
T PF15106_consen 179 YVLVLLVFIFLIILIIYKILEGHRRVQK 206 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHhH
Confidence 4555555555554555445444443333
No 341
>PF12297 EVC2_like: Ellis van Creveld protein 2 like protein; InterPro: IPR022076 This family of proteins is found in eukaryotes. Proteins in this family are typically between 571 and 1310 amino acids in length. There are two conserved sequence motifs: LPA and ELH. EVC2 is implicated in Ellis van Creveld chondrodysplastic dwarfism in humans. Mutations in this protein can give rise to this congenital condition. LIMBIN is a protein which shares around 80% sequence homology with EVC2 and it is implicated in a similar condition in bovine chondrodysplastic dwarfism.
Probab=21.47 E-value=1.1e+02 Score=26.57 Aligned_cols=30 Identities=20% Similarity=0.275 Sum_probs=19.4
Q ss_pred cchh-hHHHHHHHHHHHHHHHHHhhccCcch
Q 037839 22 GYGI-GVSVGILILITTITLASYFCTRGQQQ 51 (177)
Q Consensus 22 ~~~i-~i~l~il~li~~i~l~~~~~~r~~~~ 51 (177)
|+.. ++++++++-+++.++++++..+.+..
T Consensus 64 GlhaagFfvaflvslVL~~l~~f~l~r~~~l 94 (429)
T PF12297_consen 64 GLHAAGFFVAFLVSLVLTWLCFFLLARTRCL 94 (429)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 3433 67777777777777777766555443
No 342
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=21.17 E-value=21 Score=28.95 Aligned_cols=28 Identities=29% Similarity=0.667 Sum_probs=20.3
Q ss_pred CCC-CcccHhhHHHHH--hcCCCCcCCCCCC
Q 037839 130 DCS-HLFHVKCVDPWL--RLHPTCPVCRTSP 157 (177)
Q Consensus 130 ~C~-H~fH~~Ci~~Wl--~~~~~CP~CR~~~ 157 (177)
.|. -.||..|+..-. +.+.-||.|+...
T Consensus 239 ~C~~eWFH~~CVGL~~~PkgkWyC~~C~~~~ 269 (274)
T KOG1973|consen 239 GCPIEWFHFTCVGLKTKPKGKWYCPRCKAEN 269 (274)
T ss_pred CCCcceEEEeccccccCCCCcccchhhhhhh
Confidence 487 889999986532 2345799998754
No 343
>PRK10905 cell division protein DamX; Validated
Probab=21.16 E-value=64 Score=26.89 Aligned_cols=14 Identities=43% Similarity=0.570 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHH
Q 037839 28 SVGILILITTITLA 41 (177)
Q Consensus 28 ~l~il~li~~i~l~ 41 (177)
.+|||+|+++|+-|
T Consensus 3 GiGilVLlLLIigI 16 (328)
T PRK10905 3 GVGILVLLLLIIGI 16 (328)
T ss_pred chhHHHHHHHHHHH
Confidence 34555555444444
No 344
>PRK00418 DNA gyrase inhibitor; Reviewed
Probab=21.13 E-value=50 Score=20.55 Aligned_cols=11 Identities=27% Similarity=0.733 Sum_probs=9.0
Q ss_pred CCCcCCCCCCC
Q 037839 148 PTCPVCRTSPL 158 (177)
Q Consensus 148 ~~CP~CR~~~~ 158 (177)
..||.|++++.
T Consensus 7 v~CP~C~k~~~ 17 (62)
T PRK00418 7 VNCPTCGKPVE 17 (62)
T ss_pred ccCCCCCCccc
Confidence 46999999874
No 345
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=21.13 E-value=95 Score=19.75 Aligned_cols=10 Identities=20% Similarity=1.009 Sum_probs=4.1
Q ss_pred hHHHHHHHHH
Q 037839 26 GVSVGILILI 35 (177)
Q Consensus 26 ~i~l~il~li 35 (177)
++++|+++++
T Consensus 52 G~viGlli~~ 61 (70)
T TIGR01149 52 GLVIGLILFL 61 (70)
T ss_pred HHHHHHHHHH
Confidence 3444444433
No 346
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=21.02 E-value=80 Score=18.16 Aligned_cols=34 Identities=24% Similarity=0.418 Sum_probs=22.0
Q ss_pred CcccCccccccc--cCCCceeecCCCCCcccHhhHHH
Q 037839 108 TATCCSICLADY--RSSDMLRLLPDCSHLFHVKCVDP 142 (177)
Q Consensus 108 ~~~~C~ICl~~f--~~~~~v~~l~~C~H~fH~~Ci~~ 142 (177)
....|.+|-+.+ ....-.+-.- |+-..|.+|+..
T Consensus 10 ~~~~C~~C~~~i~g~~~~g~~C~~-C~~~~H~~C~~~ 45 (53)
T PF00130_consen 10 KPTYCDVCGKFIWGLGKQGYRCSW-CGLVCHKKCLSK 45 (53)
T ss_dssp STEB-TTSSSBECSSSSCEEEETT-TT-EEETTGGCT
T ss_pred CCCCCcccCcccCCCCCCeEEECC-CCChHhhhhhhh
Confidence 355799998888 2333344444 999999999854
No 347
>COG1545 Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]
Probab=20.91 E-value=53 Score=23.77 Aligned_cols=20 Identities=20% Similarity=0.755 Sum_probs=14.8
Q ss_pred CCCCcccHhhHHHHHhcCCCCcCCCCCC
Q 037839 130 DCSHLFHVKCVDPWLRLHPTCPVCRTSP 157 (177)
Q Consensus 130 ~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~ 157 (177)
+|||+|+ --+.-||.|.++-
T Consensus 34 ~CG~v~~--------PPr~~Cp~C~~~~ 53 (140)
T COG1545 34 KCGRVYF--------PPRAYCPKCGSET 53 (140)
T ss_pred CCCeEEc--------CCcccCCCCCCCC
Confidence 5999985 3345699998874
No 348
>COG3364 Zn-ribbon containing protein [General function prediction only]
Probab=20.84 E-value=60 Score=22.38 Aligned_cols=23 Identities=26% Similarity=0.694 Sum_probs=13.6
Q ss_pred CCCcccHhhHHHHHhcCCCCcCCCCCC
Q 037839 131 CSHLFHVKCVDPWLRLHPTCPVCRTSP 157 (177)
Q Consensus 131 C~H~fH~~Ci~~Wl~~~~~CP~CR~~~ 157 (177)
|||+|-.. -...+ +-||-|-...
T Consensus 8 CG~vf~~g-~~~il---~GCp~CG~nk 30 (112)
T COG3364 8 CGEVFDDG-SEEIL---SGCPKCGCNK 30 (112)
T ss_pred cccccccc-cHHHH---ccCccccchh
Confidence 99998664 22222 2488886543
No 349
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=20.75 E-value=1.5e+02 Score=23.74 Aligned_cols=27 Identities=26% Similarity=0.221 Sum_probs=13.1
Q ss_pred CCCCCCCCCCCCCccchhhHHHHHHHH
Q 037839 8 ASDGFLGSSNIGGFGYGIGVSVGILIL 34 (177)
Q Consensus 8 ~~~~~~~~~~~~~~~~~i~i~l~il~l 34 (177)
-+++|-+..|--.|.-.|++++|++++
T Consensus 211 ~sd~f~~y~n~q~wLwwi~~vlG~ll~ 237 (262)
T KOG4812|consen 211 FSDDFESYFNGQYWLWWIFLVLGLLLF 237 (262)
T ss_pred cccccccccccchHHHHHHHHHHHHHH
Confidence 356666665553443344444444433
No 350
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=20.67 E-value=90 Score=22.98 Aligned_cols=11 Identities=27% Similarity=0.241 Sum_probs=6.5
Q ss_pred cccCccccccc
Q 037839 109 ATCCSICLADY 119 (177)
Q Consensus 109 ~~~C~ICl~~f 119 (177)
....++++-+-
T Consensus 97 ~LSFslAlLD~ 107 (151)
T PF14584_consen 97 DLSFSLALLDD 107 (151)
T ss_pred cceeeeEEEeC
Confidence 44566776653
No 351
>PF01286 XPA_N: XPA protein N-terminal; InterPro: IPR022652 Xeroderma pigmentosum (XP) [] is a human autosomal recessive disease, characterised by a high incidence of sunlight-induced skin cancer. Skin cells of individual's with this condition are hypersensitive to ultraviolet light, due to defects in the incision step of DNA excision repair. There are a minimum of seven genetic complementation groups involved in this pathway: XP-A to XP-G. XP-A is the most severe form of the disease and is due to defects in a 30 kDa nuclear protein called XPA (or XPAC) []. The sequence of the XPA protein is conserved from higher eukaryotes [] to yeast (gene RAD14) []. XPA is a hydrophilic protein of 247 to 296 amino-acid residues which has a C4-type zinc finger motif in its central section. This entry contains the zinc-finger containing region in the XPA protein. It is found N-terminal to PF05181 from PFAM ; PDB: 1D4U_A 1XPA_A.
Probab=20.59 E-value=15 Score=20.04 Aligned_cols=20 Identities=35% Similarity=0.748 Sum_probs=9.1
Q ss_pred CCCcccHhhHHHHHhcCCCCcCCC
Q 037839 131 CSHLFHVKCVDPWLRLHPTCPVCR 154 (177)
Q Consensus 131 C~H~fH~~Ci~~Wl~~~~~CP~CR 154 (177)
|+..| .++||.++..+++|.
T Consensus 9 C~~~f----~dSyL~~~F~~~VCD 28 (34)
T PF01286_consen 9 CGKPF----MDSYLLNNFDLPVCD 28 (34)
T ss_dssp T--EE----S-SSCCCCTS-S--T
T ss_pred hCCHH----HHHHHHHhCCccccc
Confidence 66666 456777766666653
No 352
>PF12263 DUF3611: Protein of unknown function (DUF3611); InterPro: IPR022051 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 180 and 205 amino acids in length. There are two completely conserved residues (W and G) that may be functionally important.
Probab=20.56 E-value=1.6e+02 Score=22.40 Aligned_cols=30 Identities=20% Similarity=0.371 Sum_probs=12.5
Q ss_pred CCCCCCccchhhH-HHHHHHHHHHHHHHHHh
Q 037839 15 SSNIGGFGYGIGV-SVGILILITTITLASYF 44 (177)
Q Consensus 15 ~~~~~~~~~~i~i-~l~il~li~~i~l~~~~ 44 (177)
.+...|.+.++.. +.+++++...++..|+|
T Consensus 49 ~~~~~G~~~gl~~a~~gl~~l~~si~~~fry 79 (183)
T PF12263_consen 49 PNRNPGLGIGLFLAICGLVALFFSIFWSFRY 79 (183)
T ss_pred CCcCCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455555532 33333333333343444
No 353
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=20.41 E-value=98 Score=22.40 Aligned_cols=13 Identities=31% Similarity=0.534 Sum_probs=10.4
Q ss_pred CCCcCCCCCCCCC
Q 037839 148 PTCPVCRTSPLPT 160 (177)
Q Consensus 148 ~~CP~CR~~~~~~ 160 (177)
..||.|...+...
T Consensus 124 f~Cp~Cg~~l~~~ 136 (147)
T smart00531 124 FTCPRCGEELEED 136 (147)
T ss_pred EECCCCCCEEEEc
Confidence 6799999988653
No 354
>TIGR02205 septum_zipA cell division protein ZipA. This model represents the full length of bacterial cell division protein ZipA. The N-terminal hydrophobic stretch is an uncleaved signal-anchor sequence. This is followed by an unconserved, variable length, low complexity region, and then a conserved C-terminal region of about 140 amino acids (see pfam04354) that interacts with the tubulin-like cell division protein FtsZ.
Probab=20.38 E-value=73 Score=26.07 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=12.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcc
Q 037839 25 IGVSVGILILITTITLASYFCTR 47 (177)
Q Consensus 25 i~i~l~il~li~~i~l~~~~~~r 47 (177)
|.|++|++.++.+++--+|..++
T Consensus 5 iLIIvGaiaI~aLl~hGlwt~Rk 27 (284)
T TIGR02205 5 ILIIVGILAIAALLFHGLWTSRK 27 (284)
T ss_pred hHHHHHHHHHHHHHHcccccccc
Confidence 45666666665555544544433
No 355
>KOG4482 consensus Sarcoglycan complex, alpha/epsilon subunits [Function unknown]
Probab=20.03 E-value=77 Score=27.11 Aligned_cols=23 Identities=17% Similarity=0.455 Sum_probs=9.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcc
Q 037839 25 IGVSVGILILITTITLASYFCTR 47 (177)
Q Consensus 25 i~i~l~il~li~~i~l~~~~~~r 47 (177)
++|-+++.+++++++..+++|+|
T Consensus 301 faIpl~Valll~~~La~imc~rr 323 (449)
T KOG4482|consen 301 FAIPLGVALLLVLALAYIMCCRR 323 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Confidence 34444444444444444444443
Done!