Query 037839
Match_columns 177
No_of_seqs 146 out of 1607
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 07:41:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037839.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037839hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.8 7E-19 2.4E-23 118.6 6.3 78 79-159 12-89 (91)
2 1x4j_A Ring finger protein 38; 99.7 3.5E-18 1.2E-22 110.9 2.9 68 89-160 6-73 (75)
3 2ect_A Ring finger protein 126 99.7 8.7E-17 3E-21 104.9 6.4 59 108-167 14-72 (78)
4 1iym_A EL5; ring-H2 finger, ub 99.7 4.8E-17 1.6E-21 99.1 4.3 51 108-158 4-54 (55)
5 2kiz_A E3 ubiquitin-protein li 99.6 2.4E-16 8.1E-21 100.5 5.9 53 107-160 12-64 (69)
6 2ep4_A Ring finger protein 24; 99.6 2.6E-16 8.8E-21 101.6 5.7 52 108-160 14-65 (74)
7 2ecl_A Ring-box protein 2; RNF 99.6 3.1E-16 1.1E-20 103.3 4.2 52 108-159 14-76 (81)
8 3ng2_A RNF4, snurf, ring finge 99.6 1.7E-15 5.9E-20 96.8 4.6 55 108-163 9-67 (71)
9 2ecm_A Ring finger and CHY zin 99.6 2.4E-15 8.2E-20 91.4 5.0 50 108-158 4-54 (55)
10 1v87_A Deltex protein 2; ring- 99.6 3E-15 1E-19 104.4 5.7 54 108-162 24-97 (114)
11 2ea6_A Ring finger protein 4; 99.5 4.4E-15 1.5E-19 94.2 4.1 51 108-159 14-68 (69)
12 2d8s_A Cellular modulator of i 99.5 8.5E-15 2.9E-19 96.1 5.3 58 108-167 14-78 (80)
13 3dpl_R Ring-box protein 1; ubi 99.5 1.8E-15 6.3E-20 104.5 2.2 53 105-158 33-100 (106)
14 2xeu_A Ring finger protein 4; 99.5 2.6E-15 8.9E-20 93.9 2.6 52 109-161 3-58 (64)
15 2ct2_A Tripartite motif protei 99.5 5.9E-14 2E-18 93.1 6.6 59 108-167 14-76 (88)
16 2djb_A Polycomb group ring fin 99.5 5.3E-14 1.8E-18 90.3 6.2 53 108-163 14-66 (72)
17 1chc_A Equine herpes virus-1 r 99.5 3.4E-14 1.2E-18 90.0 4.7 49 108-159 4-52 (68)
18 2d8t_A Dactylidin, ring finger 99.5 9.1E-15 3.1E-19 93.7 1.0 51 108-162 14-64 (71)
19 2ecy_A TNF receptor-associated 99.4 1.2E-13 4.2E-18 87.0 5.5 51 108-162 14-65 (66)
20 4a0k_B E3 ubiquitin-protein li 99.4 2.9E-15 9.9E-20 105.0 -2.3 55 104-159 43-112 (117)
21 2ecn_A Ring finger protein 141 99.4 2.2E-14 7.6E-19 91.4 1.7 49 108-161 14-62 (70)
22 2csy_A Zinc finger protein 183 99.4 1.7E-13 5.8E-18 89.8 4.4 47 108-158 14-60 (81)
23 2yur_A Retinoblastoma-binding 99.4 2.9E-13 1E-17 87.3 5.5 50 108-160 14-65 (74)
24 2ysl_A Tripartite motif-contai 99.4 2.6E-13 8.8E-18 87.0 5.0 50 108-161 19-71 (73)
25 4ayc_A E3 ubiquitin-protein li 99.4 1.7E-13 6E-18 98.7 3.3 48 109-160 53-100 (138)
26 4ap4_A E3 ubiquitin ligase RNF 99.4 2.2E-13 7.4E-18 96.8 3.6 54 108-162 6-63 (133)
27 2ecw_A Tripartite motif-contai 99.4 9.3E-13 3.2E-17 86.5 6.2 50 108-161 18-73 (85)
28 3lrq_A E3 ubiquitin-protein li 99.4 1.7E-13 5.8E-18 93.5 2.6 51 108-161 21-72 (100)
29 1g25_A CDK-activating kinase a 99.4 4.2E-13 1.4E-17 84.3 4.0 54 109-163 3-59 (65)
30 2ecv_A Tripartite motif-contai 99.4 1.1E-12 3.6E-17 86.2 6.0 50 108-161 18-73 (85)
31 1t1h_A Gspef-atpub14, armadill 99.3 6.1E-13 2.1E-17 86.4 4.0 50 108-161 7-57 (78)
32 2egp_A Tripartite motif-contai 99.3 2.6E-13 9E-18 88.2 2.0 49 108-160 11-66 (79)
33 2ct0_A Non-SMC element 1 homol 99.3 8.1E-13 2.8E-17 85.2 3.7 49 107-158 13-63 (74)
34 2ysj_A Tripartite motif-contai 99.3 2.3E-12 7.7E-17 80.4 5.1 42 108-153 19-63 (63)
35 2y43_A E3 ubiquitin-protein li 99.3 1E-12 3.6E-17 89.2 3.5 49 109-160 22-70 (99)
36 2ckl_A Polycomb group ring fin 99.3 1.9E-12 6.3E-17 89.4 4.0 50 108-160 14-63 (108)
37 3fl2_A E3 ubiquitin-protein li 99.3 3.9E-12 1.3E-16 89.8 4.9 47 109-159 52-99 (124)
38 4ap4_A E3 ubiquitin ligase RNF 99.3 1.1E-12 3.6E-17 93.1 1.8 54 107-161 70-127 (133)
39 2ecj_A Tripartite motif-contai 99.3 3.6E-12 1.2E-16 77.9 3.8 42 108-153 14-58 (58)
40 1jm7_A BRCA1, breast cancer ty 99.3 5.1E-12 1.7E-16 87.4 5.0 50 109-162 21-73 (112)
41 3ztg_A E3 ubiquitin-protein li 99.3 6.8E-12 2.3E-16 83.9 5.4 48 108-158 12-61 (92)
42 2ckl_B Ubiquitin ligase protei 99.2 6.3E-12 2.1E-16 93.0 4.0 48 109-159 54-102 (165)
43 1rmd_A RAG1; V(D)J recombinati 99.2 4.9E-12 1.7E-16 88.3 3.0 54 109-166 23-77 (116)
44 1z6u_A NP95-like ring finger p 99.2 1.8E-11 6.2E-16 89.4 4.8 48 109-160 78-126 (150)
45 3hct_A TNF receptor-associated 99.2 9.8E-12 3.3E-16 87.1 3.1 50 108-161 17-67 (118)
46 2vje_A E3 ubiquitin-protein li 99.1 1.5E-11 5.1E-16 77.1 2.7 47 108-158 7-56 (64)
47 3l11_A E3 ubiquitin-protein li 99.1 7.1E-12 2.4E-16 87.3 1.1 47 109-159 15-62 (115)
48 1bor_A Transcription factor PM 99.1 2.2E-11 7.6E-16 74.2 3.1 48 107-161 4-51 (56)
49 1e4u_A Transcriptional repress 99.1 1.2E-10 4E-15 75.9 6.1 56 107-163 9-66 (78)
50 2vje_B MDM4 protein; proto-onc 99.1 2.2E-11 7.4E-16 76.1 2.2 49 108-158 6-55 (63)
51 2kr4_A Ubiquitin conjugation f 99.1 4.4E-11 1.5E-15 79.1 3.5 49 108-160 13-61 (85)
52 2y1n_A E3 ubiquitin-protein li 99.1 9.3E-11 3.2E-15 97.2 6.1 49 108-160 331-380 (389)
53 2kre_A Ubiquitin conjugation f 99.1 5.8E-11 2E-15 81.0 3.5 50 108-161 28-77 (100)
54 3knv_A TNF receptor-associated 99.1 3.6E-11 1.2E-15 86.9 2.1 50 107-160 29-79 (141)
55 1wgm_A Ubiquitin conjugation f 99.1 1.1E-10 3.8E-15 79.3 4.1 50 108-161 21-71 (98)
56 1jm7_B BARD1, BRCA1-associated 99.1 5.1E-11 1.7E-15 83.3 2.4 46 109-160 22-68 (117)
57 3k1l_B Fancl; UBC, ring, RWD, 99.0 7.7E-11 2.6E-15 95.7 2.3 53 106-158 305-372 (381)
58 4ic3_A E3 ubiquitin-protein li 99.0 7.8E-11 2.7E-15 75.9 1.1 43 109-159 24-67 (74)
59 3hcs_A TNF receptor-associated 98.9 5.9E-10 2E-14 82.6 3.1 51 107-161 16-67 (170)
60 1vyx_A ORF K3, K3RING; zinc-bi 98.9 1.8E-09 6.2E-14 66.7 4.3 49 107-159 4-59 (60)
61 2c2l_A CHIP, carboxy terminus 98.9 1.1E-09 3.8E-14 86.6 4.0 51 107-161 206-257 (281)
62 2ea5_A Cell growth regulator w 98.9 1.8E-09 6E-14 68.4 4.0 45 107-159 13-58 (68)
63 2yu4_A E3 SUMO-protein ligase 98.8 9.5E-10 3.3E-14 74.0 2.4 49 108-159 6-63 (94)
64 2ecg_A Baculoviral IAP repeat- 98.8 1.6E-09 5.6E-14 69.7 3.0 43 109-159 25-68 (75)
65 1wim_A KIAA0161 protein; ring 98.8 1.7E-09 5.9E-14 72.5 2.7 48 108-156 4-61 (94)
66 2f42_A STIP1 homology and U-bo 98.7 6.7E-09 2.3E-13 77.7 4.3 50 107-160 104-154 (179)
67 2yho_A E3 ubiquitin-protein li 98.7 3.2E-09 1.1E-13 69.2 1.5 44 109-160 18-62 (79)
68 3t6p_A Baculoviral IAP repeat- 98.6 1.2E-08 4.3E-13 83.6 1.1 43 109-159 295-338 (345)
69 3htk_C E3 SUMO-protein ligase 98.5 1.6E-08 5.4E-13 79.5 1.5 51 108-161 180-234 (267)
70 2bay_A PRE-mRNA splicing facto 98.5 2.9E-08 1E-12 61.4 1.7 48 110-161 4-52 (61)
71 3vk6_A E3 ubiquitin-protein li 98.4 2.7E-07 9.1E-12 61.9 3.5 46 111-159 3-49 (101)
72 3nw0_A Non-structural maintena 98.0 4.7E-06 1.6E-10 64.9 4.4 48 107-157 178-227 (238)
73 2lri_C Autoimmune regulator; Z 96.7 0.0017 6E-08 40.3 3.7 51 108-162 11-65 (66)
74 2ko5_A Ring finger protein Z; 96.0 0.003 1E-07 41.6 2.1 49 107-161 26-74 (99)
75 2jun_A Midline-1; B-BOX, TRIM, 95.4 0.011 3.7E-07 39.3 3.1 34 109-143 3-36 (101)
76 1wil_A KIAA1045 protein; ring 95.3 0.031 1.1E-06 36.0 4.7 34 108-143 14-47 (89)
77 2l2t_A Receptor tyrosine-prote 94.4 0.05 1.7E-06 30.8 3.6 30 23-52 12-41 (44)
78 2ks1_B Epidermal growth factor 94.0 0.061 2.1E-06 30.4 3.4 34 16-51 8-41 (44)
79 1we9_A PHD finger family prote 92.6 0.022 7.6E-07 34.7 0.1 48 108-156 5-58 (64)
80 3lqh_A Histone-lysine N-methyl 92.4 0.05 1.7E-06 40.4 1.7 48 109-157 2-64 (183)
81 2jwa_A Receptor tyrosine-prote 91.5 0.12 4.2E-06 29.1 2.3 28 24-51 14-41 (44)
82 1wep_A PHF8; structural genomi 90.0 0.34 1.2E-05 30.6 3.7 50 108-159 11-66 (79)
83 2lbm_A Transcriptional regulat 89.6 0.35 1.2E-05 34.3 3.9 45 107-155 61-116 (142)
84 1f62_A Transcription factor WS 89.4 0.17 5.8E-06 29.1 1.7 44 111-155 2-49 (51)
85 2ysm_A Myeloid/lymphoid or mix 89.3 0.12 4E-06 34.9 1.1 46 108-154 6-55 (111)
86 1wem_A Death associated transc 89.2 0.065 2.2E-06 33.7 -0.2 49 109-159 16-73 (76)
87 2k16_A Transcription initiatio 88.9 0.098 3.4E-06 32.8 0.4 49 108-157 17-69 (75)
88 3o36_A Transcription intermedi 88.4 0.12 3.9E-06 38.2 0.6 46 109-158 4-53 (184)
89 2l5u_A Chromodomain-helicase-D 88.3 0.2 6.7E-06 30.2 1.5 44 108-155 10-57 (61)
90 3v43_A Histone acetyltransfera 88.1 0.84 2.9E-05 30.8 4.9 46 109-154 5-62 (112)
91 3u5n_A E3 ubiquitin-protein li 87.9 0.079 2.7E-06 39.9 -0.5 47 108-158 6-56 (207)
92 1mm2_A MI2-beta; PHD, zinc fin 87.8 0.15 5.1E-06 30.7 0.7 46 108-157 8-57 (61)
93 2k1k_A Ephrin type-A receptor 87.3 0.95 3.3E-05 24.5 3.8 23 25-47 14-36 (38)
94 2kgg_A Histone demethylase jar 86.2 0.32 1.1E-05 28.2 1.6 44 111-154 4-52 (52)
95 2lv9_A Histone-lysine N-methyl 86.2 0.2 6.8E-06 33.2 0.8 46 108-155 27-75 (98)
96 3ql9_A Transcriptional regulat 85.3 0.81 2.8E-05 31.9 3.5 46 107-156 55-111 (129)
97 2vpb_A Hpygo1, pygopus homolog 83.0 1.1 3.6E-05 27.3 3.0 33 108-140 7-40 (65)
98 1z2q_A LM5-1; membrane protein 83.0 1.1 3.9E-05 28.5 3.3 37 107-143 19-55 (84)
99 2ri7_A Nucleosome-remodeling f 82.8 0.26 8.9E-06 35.8 0.1 47 108-156 7-59 (174)
100 3v43_A Histone acetyltransfera 82.5 0.39 1.3E-05 32.5 0.9 45 111-155 63-111 (112)
101 2yw8_A RUN and FYVE domain-con 82.3 1 3.6E-05 28.5 2.9 36 107-142 17-52 (82)
102 2l8s_A Integrin alpha-1; trans 82.3 2.1 7.3E-05 25.0 3.9 24 18-41 7-30 (54)
103 2ro1_A Transcription intermedi 82.1 0.33 1.1E-05 36.0 0.4 45 110-158 3-51 (189)
104 3o70_A PHD finger protein 13; 81.9 0.22 7.5E-06 30.7 -0.5 46 108-155 18-66 (68)
105 2knc_A Integrin alpha-IIB; tra 81.9 1.8 6.3E-05 25.3 3.6 24 18-41 10-33 (54)
106 1x4u_A Zinc finger, FYVE domai 81.6 1.3 4.3E-05 28.3 3.1 36 107-142 12-47 (84)
107 1joc_A EEA1, early endosomal a 81.3 0.93 3.2E-05 31.3 2.6 35 108-142 68-102 (125)
108 2yql_A PHD finger protein 21A; 81.2 0.14 4.7E-06 30.2 -1.5 44 108-155 8-55 (56)
109 3t7l_A Zinc finger FYVE domain 81.2 1.1 3.6E-05 29.1 2.6 36 108-143 19-54 (90)
110 1wew_A DNA-binding family prot 81.1 0.29 1E-05 30.9 -0.1 49 109-158 16-74 (78)
111 2k9y_A Ephrin type-A receptor 80.5 1.4 4.8E-05 23.9 2.6 23 24-46 16-38 (41)
112 1fp0_A KAP-1 corepressor; PHD 80.2 1.1 3.8E-05 29.0 2.5 45 108-156 24-72 (88)
113 1wfk_A Zinc finger, FYVE domai 79.6 1.5 5.2E-05 28.3 3.0 35 108-142 8-42 (88)
114 2cs3_A Protein C14ORF4, MY039 79.0 3.6 0.00012 26.2 4.4 39 108-146 14-52 (93)
115 2e6s_A E3 ubiquitin-protein li 79.0 0.45 1.5E-05 30.1 0.3 45 110-155 27-76 (77)
116 1xwh_A Autoimmune regulator; P 78.9 0.27 9.3E-06 30.0 -0.8 45 108-156 7-55 (66)
117 1vfy_A Phosphatidylinositol-3- 78.8 1.6 5.4E-05 27.0 2.8 33 110-142 12-44 (73)
118 2k1a_A Integrin alpha-IIB; sin 78.5 3.1 0.0001 23.0 3.6 24 17-40 7-30 (42)
119 2kwj_A Zinc finger protein DPF 78.3 1.8 6.1E-05 29.2 3.2 44 111-154 3-59 (114)
120 1y02_A CARP2, FYVE-ring finger 78.1 0.24 8.1E-06 34.2 -1.4 48 108-155 18-65 (120)
121 3m62_A Ubiquitin conjugation f 77.6 1.2 4E-05 40.9 2.6 50 107-160 889-939 (968)
122 2l43_A N-teminal domain from h 77.4 0.35 1.2E-05 31.3 -0.6 55 108-162 24-81 (88)
123 3asl_A E3 ubiquitin-protein li 76.5 0.48 1.6E-05 29.3 -0.1 45 111-156 20-69 (70)
124 3shb_A E3 ubiquitin-protein li 75.4 0.35 1.2E-05 30.6 -1.0 45 111-156 28-77 (77)
125 2xb1_A Pygopus homolog 2, B-ce 75.2 1.7 5.7E-05 29.0 2.3 50 110-159 4-64 (105)
126 1dvp_A HRS, hepatocyte growth 75.1 1.6 5.5E-05 32.9 2.5 34 109-142 161-194 (220)
127 1wee_A PHD finger family prote 75.1 0.23 7.9E-06 30.8 -1.9 48 108-157 15-67 (72)
128 2klu_A T-cell surface glycopro 74.7 2.2 7.7E-05 26.0 2.5 20 27-46 13-32 (70)
129 1weo_A Cellulose synthase, cat 74.6 15 0.0005 23.8 7.8 59 108-166 15-77 (93)
130 1wen_A Inhibitor of growth fam 73.9 1.7 5.8E-05 26.8 1.9 45 108-157 15-66 (71)
131 4gne_A Histone-lysine N-methyl 73.9 2.5 8.6E-05 28.3 2.9 47 107-159 13-65 (107)
132 2puy_A PHD finger protein 21A; 73.4 0.53 1.8E-05 28.0 -0.5 43 109-155 5-51 (60)
133 3zyq_A Hepatocyte growth facto 73.1 1.9 6.5E-05 32.7 2.4 35 109-143 164-198 (226)
134 2yt5_A Metal-response element- 72.8 2.2 7.5E-05 25.6 2.2 49 108-156 5-61 (66)
135 2ku3_A Bromodomain-containing 72.8 4.6 0.00016 24.9 3.7 50 106-155 13-65 (71)
136 1weu_A Inhibitor of growth fam 72.1 2.8 9.6E-05 27.3 2.7 45 108-157 35-86 (91)
137 3i2d_A E3 SUMO-protein ligase 70.5 2.9 9.9E-05 34.2 3.0 47 110-159 250-300 (371)
138 1wyh_A SLIM 2, skeletal muscle 70.3 3.2 0.00011 24.9 2.6 42 110-161 6-47 (72)
139 2klu_A T-cell surface glycopro 70.2 4.9 0.00017 24.5 3.3 30 23-52 12-41 (70)
140 4fo9_A E3 SUMO-protein ligase 69.9 3 0.0001 34.0 3.0 47 111-160 217-267 (360)
141 1z60_A TFIIH basal transcripti 69.7 1.8 6.2E-05 25.8 1.3 43 110-153 16-58 (59)
142 1x4k_A Skeletal muscle LIM-pro 68.7 3 0.0001 25.0 2.2 41 110-160 6-46 (72)
143 2d8v_A Zinc finger FYVE domain 68.3 3.9 0.00013 24.9 2.5 32 108-144 7-39 (67)
144 1x4l_A Skeletal muscle LIM-pro 68.1 4.4 0.00015 24.3 2.9 42 110-161 6-49 (72)
145 2e6r_A Jumonji/ARID domain-con 66.9 0.5 1.7E-05 30.9 -1.8 48 108-156 15-66 (92)
146 1iij_A ERBB-2 receptor protein 66.9 1.9 6.6E-05 22.9 0.9 22 27-48 13-34 (35)
147 3ask_A E3 ubiquitin-protein li 66.7 1.9 6.4E-05 32.9 1.1 46 110-156 175-225 (226)
148 1x63_A Skeletal muscle LIM-pro 66.4 5.7 0.00019 24.4 3.3 41 110-160 16-56 (82)
149 2cu8_A Cysteine-rich protein 2 65.7 3.7 0.00013 25.0 2.2 42 109-161 9-50 (76)
150 1x61_A Thyroid receptor intera 65.4 5.1 0.00018 23.9 2.8 38 111-158 7-44 (72)
151 1zbd_B Rabphilin-3A; G protein 65.2 4.4 0.00015 28.2 2.8 35 107-141 53-88 (134)
152 2gmg_A Hypothetical protein PF 64.8 1.3 4.4E-05 29.7 -0.1 28 130-162 72-99 (105)
153 3hd7_A Vesicle-associated memb 64.7 4.7 0.00016 26.0 2.6 22 24-45 69-90 (91)
154 3mpx_A FYVE, rhogef and PH dom 64.0 1.4 4.9E-05 36.2 0.0 50 108-157 374-430 (434)
155 2dj7_A Actin-binding LIM prote 62.4 5.4 0.00018 24.7 2.6 39 109-158 15-53 (80)
156 1g47_A Pinch protein; LIM doma 62.4 5.7 0.00019 24.0 2.6 43 109-161 11-53 (77)
157 2kog_A Vesicle-associated memb 61.9 6.5 0.00022 26.8 3.1 23 23-45 96-118 (119)
158 3o7a_A PHD finger protein 13 v 61.7 0.9 3.1E-05 26.2 -1.2 41 114-155 8-51 (52)
159 2l34_A TYRO protein tyrosine k 61.2 11 0.00037 19.6 3.2 23 25-47 10-32 (33)
160 2co8_A NEDD9 interacting prote 60.6 7.2 0.00025 24.2 2.9 42 109-161 15-56 (82)
161 1iml_A CRIP, cysteine rich int 60.2 3.1 0.0001 25.4 1.1 45 107-156 25-70 (76)
162 3a1b_A DNA (cytosine-5)-methyl 59.6 11 0.00038 27.0 4.0 44 107-154 77-132 (159)
163 1x68_A FHL5 protein; four-and- 58.7 5.4 0.00019 24.2 2.1 41 110-160 6-48 (76)
164 2pv0_B DNA (cytosine-5)-methyl 58.4 9.9 0.00034 31.2 4.1 45 107-155 91-147 (386)
165 2egq_A FHL1 protein; LIM domai 55.0 8.5 0.00029 23.2 2.5 42 110-161 16-60 (77)
166 3f6q_B LIM and senescent cell 55.0 6.4 0.00022 23.3 1.9 42 109-160 11-52 (72)
167 2d8z_A Four and A half LIM dom 54.8 12 0.00041 22.1 3.2 39 110-160 6-44 (70)
168 2l3k_A Rhombotin-2, linker, LI 54.5 6.1 0.00021 26.6 1.9 49 105-157 32-80 (123)
169 2d8y_A Eplin protein; LIM doma 54.4 13 0.00045 23.3 3.4 41 110-161 16-56 (91)
170 2cup_A Skeletal muscle LIM-pro 53.2 12 0.00041 23.8 3.2 48 107-159 31-78 (101)
171 1nyp_A Pinch protein; LIM doma 51.4 8.6 0.00029 22.5 2.0 40 110-161 6-45 (66)
172 1a7i_A QCRP2 (LIM1); LIM domai 51.4 4.6 0.00016 24.9 0.8 41 110-161 8-48 (81)
173 2ehe_A Four and A half LIM dom 51.3 9 0.00031 23.5 2.2 42 110-161 16-57 (82)
174 1wev_A Riken cDNA 1110020M19; 50.3 8.7 0.0003 24.5 2.0 49 109-157 16-73 (88)
175 1x64_A Alpha-actinin-2 associa 49.6 17 0.00057 22.7 3.3 41 109-161 25-65 (89)
176 2vnf_A ING 4, P29ING4, inhibit 49.3 2.2 7.6E-05 25.3 -0.9 42 109-155 10-58 (60)
177 2g6q_A Inhibitor of growth pro 49.2 2.4 8.2E-05 25.4 -0.8 44 109-155 11-59 (62)
178 2knc_B Integrin beta-3; transm 48.1 13 0.00044 23.4 2.5 8 26-33 16-23 (79)
179 2dar_A PDZ and LIM domain prot 47.8 10 0.00034 23.9 2.0 41 109-161 25-65 (90)
180 1x62_A C-terminal LIM domain p 47.7 11 0.00038 23.0 2.2 38 109-158 15-52 (79)
181 2zet_C Melanophilin; complex, 46.3 13 0.00044 26.4 2.6 32 108-140 67-100 (153)
182 1v6g_A Actin binding LIM prote 45.0 17 0.00058 22.1 2.8 39 110-160 16-54 (81)
183 2o35_A Hypothetical protein DU 44.6 9.3 0.00032 25.2 1.4 12 135-146 43-54 (105)
184 3fyb_A Protein of unknown func 44.2 9.4 0.00032 25.1 1.4 11 135-145 42-52 (104)
185 2d8x_A Protein pinch; LIM doma 44.1 14 0.00048 21.8 2.2 39 110-160 6-44 (70)
186 2iyb_E Testin, TESS, TES; LIM 43.7 13 0.00043 21.8 1.9 41 111-161 4-46 (65)
187 1wig_A KIAA1808 protein; LIM d 43.5 24 0.00081 21.1 3.2 36 111-158 7-42 (73)
188 3mjh_B Early endosome antigen 43.0 6 0.00021 20.8 0.3 15 109-123 5-19 (34)
189 2pk7_A Uncharacterized protein 42.4 4.3 0.00015 24.9 -0.4 17 143-159 4-20 (69)
190 2cor_A Pinch protein; LIM doma 41.0 26 0.0009 21.3 3.2 40 109-160 15-54 (79)
191 1wd2_A Ariadne-1 protein homol 40.0 4.5 0.00015 24.0 -0.6 36 110-145 7-46 (60)
192 2cuq_A Four and A half LIM dom 39.8 16 0.00054 22.1 2.0 38 110-159 16-53 (80)
193 1zfo_A LAsp-1; LIM domain, zin 39.8 15 0.00051 18.4 1.5 28 110-140 4-31 (31)
194 2jmo_A Parkin; IBR, E3 ligase, 39.1 2.3 8E-05 26.7 -2.1 19 130-150 55-73 (80)
195 2cur_A Skeletal muscle LIM-pro 39.0 15 0.0005 21.6 1.7 38 110-159 6-43 (69)
196 3c6w_A P28ING5, inhibitor of g 38.6 3.3 0.00011 24.5 -1.4 42 109-155 9-57 (59)
197 1yuz_A Nigerythrin; rubrythrin 36.5 19 0.00067 26.6 2.3 25 125-156 171-195 (202)
198 3pwf_A Rubrerythrin; non heme 35.9 20 0.00069 25.7 2.3 26 124-156 137-162 (170)
199 1m3v_A FLIN4, fusion of the LI 35.8 28 0.00095 23.1 2.9 51 108-160 31-82 (122)
200 1q55_A EP-cadherin, C-cadherin 35.3 7.9 0.00027 35.2 0.0 21 21-41 704-724 (880)
201 2l4z_A DNA endonuclease RBBP8, 33.8 16 0.00054 24.7 1.3 39 109-158 61-99 (123)
202 2jny_A Uncharacterized BCR; st 33.0 6.4 0.00022 24.0 -0.7 19 142-160 5-23 (67)
203 2xjy_A Rhombotin-2; oncoprotei 32.4 25 0.00085 23.5 2.2 51 107-159 27-78 (131)
204 1x3h_A Leupaxin; paxillin fami 31.3 22 0.00074 21.5 1.6 40 110-161 16-55 (80)
205 2ku7_A MLL1 PHD3-CYP33 RRM chi 31.1 44 0.0015 22.1 3.3 29 131-159 8-47 (140)
206 2dlo_A Thyroid receptor-intera 31.1 17 0.00059 22.1 1.1 40 109-160 15-54 (81)
207 1lko_A Rubrerythrin all-iron(I 30.8 18 0.00061 26.5 1.3 24 127-156 157-180 (191)
208 2jvx_A NF-kappa-B essential mo 29.2 13 0.00044 18.6 0.2 10 148-157 4-13 (28)
209 1b8t_A Protein (CRP1); LIM dom 29.0 32 0.0011 24.8 2.4 37 111-158 117-153 (192)
210 1rut_X Flinc4, fusion protein 28.9 23 0.00077 25.5 1.6 49 108-158 31-80 (188)
211 3vhs_A ATPase wrnip1; zinc fin 27.9 16 0.00053 17.8 0.3 9 149-157 8-16 (29)
212 3kqi_A GRC5, PHD finger protei 27.5 42 0.0014 20.4 2.4 47 109-157 10-62 (75)
213 2k21_A Potassium voltage-gated 26.9 64 0.0022 22.2 3.4 23 26-48 57-79 (138)
214 3kv5_D JMJC domain-containing 26.4 45 0.0015 28.2 3.2 48 108-157 36-89 (488)
215 2hf1_A Tetraacyldisaccharide-1 26.3 21 0.00073 21.6 0.9 13 148-160 9-21 (68)
216 1zza_A Stannin, AG8_1; helix, 26.1 53 0.0018 20.3 2.6 28 18-45 11-38 (90)
217 2l9u_A Receptor tyrosine-prote 25.8 39 0.0013 17.7 1.7 14 22-35 7-20 (40)
218 3kv4_A PHD finger protein 8; e 25.4 13 0.00044 31.2 -0.4 45 114-159 9-59 (447)
219 2jtn_A LIM domain-binding prot 25.3 30 0.001 24.7 1.6 49 105-159 83-131 (182)
220 2jne_A Hypothetical protein YF 25.2 21 0.00071 23.4 0.7 41 110-159 33-73 (101)
221 2das_A Zinc finger MYM-type pr 25.0 83 0.0028 18.6 3.2 35 109-143 20-55 (62)
222 2kdx_A HYPA, hydrogenase/ureas 24.6 29 0.00098 23.2 1.3 22 130-157 78-100 (119)
223 2jr6_A UPF0434 protein NMA0874 24.4 6.7 0.00023 24.0 -1.7 16 145-160 6-21 (68)
224 2ct7_A Ring finger protein 31; 23.2 6 0.00021 25.1 -2.2 17 127-143 45-61 (86)
225 2lcq_A Putative toxin VAPC6; P 23.2 19 0.00065 25.4 0.2 22 130-157 137-158 (165)
226 2vrw_B P95VAV, VAV1, proto-onc 22.8 64 0.0022 25.9 3.4 36 107-142 355-391 (406)
227 2kpi_A Uncharacterized protein 22.8 53 0.0018 18.9 2.1 14 108-121 9-22 (56)
228 2js4_A UPF0434 protein BB2007; 22.8 23 0.00078 21.6 0.5 15 146-160 7-21 (70)
229 3dl8_E Protein-export membrane 22.6 1.1E+02 0.0038 20.2 3.9 34 11-44 40-73 (107)
230 2csz_A Synaptotagmin-like prot 22.5 54 0.0019 20.4 2.2 34 107-140 23-57 (76)
231 1pfi_A Major coat protein of P 21.5 95 0.0033 16.9 2.8 20 27-46 25-44 (46)
232 2rsd_A E3 SUMO-protein ligase 21.4 30 0.001 20.7 0.8 45 110-155 11-64 (68)
233 1j2o_A FLIN2, fusion of rhombo 21.0 1.4E+02 0.0047 19.2 4.3 40 105-146 26-66 (114)
234 1afo_A Glycophorin A; integral 20.8 1.1E+02 0.0038 16.4 3.3 8 27-34 19-26 (40)
235 2xqn_T Testin, TESS; metal-bin 20.4 53 0.0018 21.6 2.0 25 132-158 50-74 (126)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.76 E-value=7e-19 Score=118.56 Aligned_cols=78 Identities=35% Similarity=0.741 Sum_probs=65.9
Q ss_pred eecCCCCHHHHhhCCCccchhhhhccCCCCcccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCC
Q 037839 79 VIDVGLDESTIKSYPKLPYSEARLQKKDSTATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPL 158 (177)
Q Consensus 79 ~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~ 158 (177)
....+++++.++.+|...+..... .......|+||+++|..++.++.++ |||.||..||..|+..+.+||+||+++.
T Consensus 12 ~~~~~~s~~~i~~lp~~~~~~~~~--~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 12 VANPPASKESIDALPEILVTEDHG--AVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCRCMFP 88 (91)
T ss_dssp SCCCCCCHHHHHTSCEEECCTTCS--SSSSCSEETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred cCCCCCCHHHHHhCCCeeeccccc--ccCCCCCCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHcCCcCcCcCccCC
Confidence 344689999999999887765432 2335668999999999999899999 9999999999999999999999999885
Q ss_pred C
Q 037839 159 P 159 (177)
Q Consensus 159 ~ 159 (177)
+
T Consensus 89 ~ 89 (91)
T 2l0b_A 89 P 89 (91)
T ss_dssp C
T ss_pred C
Confidence 4
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=3.5e-18 Score=110.90 Aligned_cols=68 Identities=40% Similarity=0.972 Sum_probs=55.1
Q ss_pred HhhCCCccchhhhhccCCCCcccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCCCC
Q 037839 89 IKSYPKLPYSEARLQKKDSTATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPLPT 160 (177)
Q Consensus 89 ~~~~p~~~~~~~~~~~~~~~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~~~ 160 (177)
++.+|...+.... ...+...|+||++.|..++.++.++ |||+||..||..|++.+.+||+||+++.+.
T Consensus 6 i~~lp~~~~~~~~---~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 6 SGQLPSYRFNPNN---HQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp CSSCCCEEBCSSS---CSSSCCEETTTTEECCBTCEEEEET-TTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred HhhCCcEEecCcc---ccCCCCCCeECCcccCCCCeEEEEC-CCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 3455665554322 2234568999999999999999999 999999999999999999999999998764
No 3
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.67 E-value=8.7e-17 Score=104.90 Aligned_cols=59 Identities=41% Similarity=0.904 Sum_probs=51.7
Q ss_pred CcccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCCCCCCCCCcc
Q 037839 108 TATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPLPTPLSTPLA 167 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~~~~~~~~~~ 167 (177)
....|+||++.|..++.+..++ |||.||..||..|++.+.+||+||+.+......+.-.
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~ 72 (78)
T 2ect_A 14 SGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTATNPP 72 (78)
T ss_dssp SSCCCTTTTSCCCTTSCEEECT-TSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSCCCCS
T ss_pred CCCCCeeCCccccCCCCEEEeC-CCCeecHHHHHHHHHcCCcCcCcCCccCCcccCCCCC
Confidence 4567999999999998888898 9999999999999999999999999998776554433
No 4
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.66 E-value=4.8e-17 Score=99.14 Aligned_cols=51 Identities=43% Similarity=1.038 Sum_probs=46.0
Q ss_pred CcccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCC
Q 037839 108 TATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPL 158 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~ 158 (177)
+...|+||++.|..++.+..++.|||.||..|+..|++++.+||+||+++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 456799999999998888888679999999999999999999999999874
No 5
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.64 E-value=2.4e-16 Score=100.46 Aligned_cols=53 Identities=42% Similarity=0.910 Sum_probs=47.7
Q ss_pred CCcccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCCCC
Q 037839 107 STATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPLPT 160 (177)
Q Consensus 107 ~~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~~~ 160 (177)
.....|+||++.|..++.++.++ |||.||..||..|+..+.+||+||+.+...
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred CCCCCCeeCCccccCCCcEEEeC-CCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence 34567999999999888888998 999999999999999999999999998654
No 6
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=2.6e-16 Score=101.64 Aligned_cols=52 Identities=37% Similarity=0.947 Sum_probs=47.5
Q ss_pred CcccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCCCC
Q 037839 108 TATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPLPT 160 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~~~ 160 (177)
....|+||++.|..++.+..++ |||.||..||..|++.+.+||+||+++...
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 14 LHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQL 65 (74)
T ss_dssp CSCBCSSSCCBCCSSSCEEEET-TTEEEEHHHHHHHHHHCSBCTTTCCBCSSC
T ss_pred CCCCCcCCCcccCCCCcEEEcC-CCCEecHHHHHHHHHcCCcCCCcCcccccc
Confidence 4567999999999999998998 999999999999999989999999998653
No 7
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=3.1e-16 Score=103.29 Aligned_cols=52 Identities=25% Similarity=0.722 Sum_probs=42.1
Q ss_pred CcccCccccccccC-----------CCceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCCC
Q 037839 108 TATCCSICLADYRS-----------SDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPLP 159 (177)
Q Consensus 108 ~~~~C~ICl~~f~~-----------~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~~ 159 (177)
++..|+||+++|.. ++.++.++.|||.||.+||..|+..+.+||+||+++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 45568888888754 44455665699999999999999999999999999854
No 8
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.57 E-value=1.7e-15 Score=96.77 Aligned_cols=55 Identities=25% Similarity=0.620 Sum_probs=46.9
Q ss_pred CcccCccccccccCC----CceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCCCCCCC
Q 037839 108 TATCCSICLADYRSS----DMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPLPTPLS 163 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~----~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~~~~~~ 163 (177)
+...|+||++.|..+ +.+..++ |||.||..||..|+..+.+||+||+++....+.
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 67 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKRYH 67 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSCC
T ss_pred CCCCCcccChhhhccccccCCeEeCC-CCChHhHHHHHHHHHcCCCCCCCCCccChhhee
Confidence 456799999999764 4556777 999999999999999999999999999876544
No 9
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.57 E-value=2.4e-15 Score=91.42 Aligned_cols=50 Identities=34% Similarity=0.812 Sum_probs=43.1
Q ss_pred CcccCccccccccCCC-ceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCC
Q 037839 108 TATCCSICLADYRSSD-MLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPL 158 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~-~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~ 158 (177)
+...|+||++.|..++ .+..++ |||.||..|+..|+..+.+||+||+++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLP-CGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECT-TSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecC-CCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 4567999999997644 566777 9999999999999999999999999874
No 10
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.56 E-value=3e-15 Score=104.40 Aligned_cols=54 Identities=28% Similarity=0.511 Sum_probs=43.1
Q ss_pred CcccCccccccccCCC---------------ceeecCCCCCcccHhhHHHHH-----hcCCCCcCCCCCCCCCCC
Q 037839 108 TATCCSICLADYRSSD---------------MLRLLPDCSHLFHVKCVDPWL-----RLHPTCPVCRTSPLPTPL 162 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~---------------~v~~l~~C~H~fH~~Ci~~Wl-----~~~~~CP~CR~~~~~~~~ 162 (177)
....|+||++.|..+. .++.++ |+|+||..||..|+ ..+.+||+||+.+.....
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~g 97 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTG 97 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCC-CCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCCC
Confidence 3457999999997653 344676 99999999999999 446689999999876533
No 11
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=4.4e-15 Score=94.20 Aligned_cols=51 Identities=27% Similarity=0.675 Sum_probs=43.6
Q ss_pred CcccCccccccccCC----CceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCCC
Q 037839 108 TATCCSICLADYRSS----DMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPLP 159 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~----~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~~ 159 (177)
+...|+||++.|..+ +.+..++ |||.||..||..|+..+..||+||+++..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 14 GTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CCCCCTTTCCCHHHHTTTTCCEEECS-SSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCcccCccccccccccCCeEeCC-CCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 456799999999864 3446777 99999999999999999999999998753
No 12
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=8.5e-15 Score=96.14 Aligned_cols=58 Identities=21% Similarity=0.608 Sum_probs=47.7
Q ss_pred CcccCccccccccCCCceeecCCCC-----CcccHhhHHHHHhcC--CCCcCCCCCCCCCCCCCCcc
Q 037839 108 TATCCSICLADYRSSDMLRLLPDCS-----HLFHVKCVDPWLRLH--PTCPVCRTSPLPTPLSTPLA 167 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~~v~~l~~C~-----H~fH~~Ci~~Wl~~~--~~CP~CR~~~~~~~~~~~~~ 167 (177)
+...|+||+++|..++.+ ++| |+ |.||.+||+.|+..+ .+||+||+++.......|++
T Consensus 14 ~~~~C~IC~~~~~~~~~l-~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~~~P~~ 78 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPL-ITP-CHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKLSGPS 78 (80)
T ss_dssp TSCCCSSSCCCCCSSSCE-ECS-SSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCCSCCCC
T ss_pred CCCCCeEcCccccCCCee-Eec-cccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCcccCCCC
Confidence 456799999999877776 588 86 999999999999765 48999999998766555543
No 13
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.53 E-value=1.8e-15 Score=104.47 Aligned_cols=53 Identities=25% Similarity=0.538 Sum_probs=44.2
Q ss_pred CCCCcccCccccccccCCC---------------ceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCC
Q 037839 105 KDSTATCCSICLADYRSSD---------------MLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPL 158 (177)
Q Consensus 105 ~~~~~~~C~ICl~~f~~~~---------------~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~ 158 (177)
....+..|+||++.|..+- .++.++ |+|.||..||..|+..+.+||+||+++.
T Consensus 33 ~d~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 33 WDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp ESSCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET-TSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred cCCCCCCCccCChhHhCcCchhhccccccCCccceEeecc-cCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 3445678999999998651 356677 9999999999999999999999999864
No 14
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.53 E-value=2.6e-15 Score=93.88 Aligned_cols=52 Identities=27% Similarity=0.655 Sum_probs=44.8
Q ss_pred cccCccccccccCC----CceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCCCCC
Q 037839 109 ATCCSICLADYRSS----DMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPLPTP 161 (177)
Q Consensus 109 ~~~C~ICl~~f~~~----~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~~~~ 161 (177)
...|+||++.|..+ +.+..++ |||.||..|+..|+.++..||+||+++....
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 58 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKR 58 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEET-TSCEEEHHHHHHHHHHCSBCTTTCCBCTTTC
T ss_pred CCCCCccChhhhCccccCCCEEeCC-CCCchhHHHHHHHHHcCCCCCCCCccCCccc
Confidence 45799999999764 4556777 9999999999999999999999999987654
No 15
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=5.9e-14 Score=93.13 Aligned_cols=59 Identities=24% Similarity=0.571 Sum_probs=47.8
Q ss_pred CcccCccccccccCCCc-eeecCCCCCcccHhhHHHHHhcC---CCCcCCCCCCCCCCCCCCcc
Q 037839 108 TATCCSICLADYRSSDM-LRLLPDCSHLFHVKCVDPWLRLH---PTCPVCRTSPLPTPLSTPLA 167 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~~-v~~l~~C~H~fH~~Ci~~Wl~~~---~~CP~CR~~~~~~~~~~~~~ 167 (177)
+...|+||++.|...+. ...++ |||.||..|+..|+..+ ..||+||+++....+.....
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~i~~l~~ 76 (88)
T 2ct2_A 14 EVLECPICMESFTEEQLRPKLLH-CGHTICRQCLEKLLASSINGVRCPFCSKITRITSLTQLTD 76 (88)
T ss_dssp SCCBCTTTCCBCCTTSSCEEECS-SSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSSTTTSEE
T ss_pred CCCCCccCCccccccCCCeEECC-CCChhhHHHHHHHHHcCCCCcCCCCCCCcccchhHHHHHH
Confidence 45679999999988664 56777 99999999999999875 78999999987765444333
No 16
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=5.3e-14 Score=90.28 Aligned_cols=53 Identities=23% Similarity=0.429 Sum_probs=44.2
Q ss_pred CcccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCCCCCCC
Q 037839 108 TATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPLPTPLS 163 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~~~~~~ 163 (177)
+...|+||++.|.++ +..++ |||.||..||..|+..+..||+||+++......
T Consensus 14 ~~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 66 (72)
T 2djb_A 14 PYILCSICKGYLIDA--TTITE-CLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPL 66 (72)
T ss_dssp GGGSCTTTSSCCSSC--EECSS-SCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSC
T ss_pred CCCCCCCCChHHHCc--CEECC-CCCHHHHHHHHHHHHcCCcCCCcCcccCccccc
Confidence 456799999998864 33346 999999999999999889999999999765544
No 17
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.47 E-value=3.4e-14 Score=89.99 Aligned_cols=49 Identities=39% Similarity=0.897 Sum_probs=42.4
Q ss_pred CcccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCCC
Q 037839 108 TATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPLP 159 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~~ 159 (177)
....|+||++.+..+ +..++ |||.||..|+..|+..+.+||+||+++..
T Consensus 4 ~~~~C~IC~~~~~~~--~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNY--SMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSC--EEETT-TTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCC--cEecC-CCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 355799999998753 46787 99999999999999999999999999864
No 18
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=9.1e-15 Score=93.66 Aligned_cols=51 Identities=33% Similarity=0.600 Sum_probs=43.4
Q ss_pred CcccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCCCCCC
Q 037839 108 TATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPLPTPL 162 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~~~~~ 162 (177)
+...|+||++.+..+ ..++ |||.||..||..|+..+..||+||+.+....+
T Consensus 14 ~~~~C~IC~~~~~~~---~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 64 (71)
T 2d8t_A 14 TVPECAICLQTCVHP---VSLP-CKHVFCYLCVKGASWLGKRCALCRQEIPEDFL 64 (71)
T ss_dssp SCCBCSSSSSBCSSE---EEET-TTEEEEHHHHHHCTTCSSBCSSSCCBCCHHHH
T ss_pred CCCCCccCCcccCCC---EEcc-CCCHHHHHHHHHHHHCCCcCcCcCchhCHhhc
Confidence 456799999998765 5667 99999999999999998999999999875443
No 19
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=1.2e-13 Score=87.05 Aligned_cols=51 Identities=24% Similarity=0.493 Sum_probs=42.4
Q ss_pred CcccCccccccccCCCceeecCCCCCcccHhhHHHHHh-cCCCCcCCCCCCCCCCC
Q 037839 108 TATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLR-LHPTCPVCRTSPLPTPL 162 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~-~~~~CP~CR~~~~~~~~ 162 (177)
+...|+||++.+.++. .++ |||.||..||..|+. ....||+||+++....+
T Consensus 14 ~~~~C~IC~~~~~~p~---~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 14 DKYKCEKCHLVLCSPK---QTE-CGHRFCESCMAALLSSSSPKCTACQESIVKDKV 65 (66)
T ss_dssp CCEECTTTCCEESSCC---CCS-SSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred cCCCCCCCChHhcCee---ECC-CCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence 4567999999998763 356 999999999999994 56789999999876553
No 20
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.44 E-value=2.9e-15 Score=105.03 Aligned_cols=55 Identities=24% Similarity=0.529 Sum_probs=3.0
Q ss_pred cCCCCcccCccccccccCC-------------C--ceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCCC
Q 037839 104 KKDSTATCCSICLADYRSS-------------D--MLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPLP 159 (177)
Q Consensus 104 ~~~~~~~~C~ICl~~f~~~-------------~--~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~~ 159 (177)
........|+||+++|..+ + .+..++ |+|.||..||..|+..+.+||+||+++..
T Consensus 43 ~wd~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~-C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 43 AWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWEF 112 (117)
T ss_dssp EECCCC-----------------------------------------------------------------
T ss_pred eecCCCCcCeECChhhcCcChhhhcccccccccccccccCC-cCceEcHHHHHHHHHcCCcCCCCCCeeee
Confidence 3444567899999999753 2 222345 99999999999999999999999998653
No 21
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=2.2e-14 Score=91.44 Aligned_cols=49 Identities=35% Similarity=0.859 Sum_probs=43.0
Q ss_pred CcccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCCCCC
Q 037839 108 TATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPLPTP 161 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~~~~ 161 (177)
+...|+||++.+.. ..++ |||.||..|+..|+..+..||+||+++....
T Consensus 14 ~~~~C~IC~~~~~~----~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 14 DEEECCICMDGRAD----LILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCSSSCCSCCS----EEET-TTEEECHHHHHHSSCCCSSCHHHHHCTTCCC
T ss_pred CCCCCeeCCcCccC----cccC-CCCcccHHHHHHHHHCcCcCCCcCCcccCCC
Confidence 45679999999876 5777 9999999999999999999999999987654
No 22
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=1.7e-13 Score=89.84 Aligned_cols=47 Identities=23% Similarity=0.578 Sum_probs=41.4
Q ss_pred CcccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCC
Q 037839 108 TATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPL 158 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~ 158 (177)
....|+||++.|..+ ..++ |||.||..||..|+.....||+||+++.
T Consensus 14 ~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 14 IPFRCFICRQAFQNP---VVTK-CRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCSBCSSSCSBCCSE---EECT-TSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCcCCCchhcCe---eEcc-CCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 456799999999765 4577 9999999999999998899999999985
No 23
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.40 E-value=2.9e-13 Score=87.31 Aligned_cols=50 Identities=22% Similarity=0.547 Sum_probs=41.0
Q ss_pred CcccCccccccccCCCceeecCCCCCcccHhhHHHHHhcC--CCCcCCCCCCCCC
Q 037839 108 TATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLH--PTCPVCRTSPLPT 160 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~--~~CP~CR~~~~~~ 160 (177)
+...|+||++.|..+ ..++.|||.||..||..|+..+ ..||+||+++...
T Consensus 14 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2yur_A 14 DELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSP 65 (74)
T ss_dssp GGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCT
T ss_pred CCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCc
Confidence 456799999999876 3455599999999999999865 6899999986543
No 24
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=2.6e-13 Score=87.03 Aligned_cols=50 Identities=28% Similarity=0.593 Sum_probs=41.5
Q ss_pred CcccCccccccccCCCceeecCCCCCcccHhhHHHHHh---cCCCCcCCCCCCCCCC
Q 037839 108 TATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLR---LHPTCPVCRTSPLPTP 161 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~---~~~~CP~CR~~~~~~~ 161 (177)
+...|+||++.|..+ ..++ |||.||..|+..|+. ....||+||+++....
T Consensus 19 ~~~~C~IC~~~~~~~---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 19 EEVICPICLDILQKP---VTID-CGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CCCBCTTTCSBCSSE---EECT-TCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred cCCEeccCCcccCCe---EEcC-CCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence 456799999998854 4567 999999999999996 4568999999987543
No 25
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.37 E-value=1.7e-13 Score=98.71 Aligned_cols=48 Identities=27% Similarity=0.736 Sum_probs=42.0
Q ss_pred cccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCCCC
Q 037839 109 ATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPLPT 160 (177)
Q Consensus 109 ~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~~~ 160 (177)
...|+||++.|..+ ..++ |||.||..||..|+..+.+||+||+++...
T Consensus 53 ~~~C~iC~~~~~~~---~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 53 ELQCIICSEYFIEA---VTLN-CAHSFCSYCINEWMKRKIECPICRKDIKSK 100 (138)
T ss_dssp HSBCTTTCSBCSSE---EEET-TSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred cCCCcccCcccCCc---eECC-CCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence 34699999999765 5677 999999999999999999999999998654
No 26
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.37 E-value=2.2e-13 Score=96.75 Aligned_cols=54 Identities=26% Similarity=0.632 Sum_probs=46.4
Q ss_pred CcccCccccccccCC----CceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCCCCCC
Q 037839 108 TATCCSICLADYRSS----DMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPLPTPL 162 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~----~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~~~~~ 162 (177)
+...|+||++.|..+ +.+..++ |||.||..||..|++.+.+||+||+.+.....
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l 63 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 63 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEET-TCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCE
T ss_pred CCCCCcccChhhhCccccccCeEecC-CCChhhHHHHHHHHHhCCCCCCCCCcCccccc
Confidence 456799999999765 5556777 99999999999999999999999999976654
No 27
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.37 E-value=9.3e-13 Score=86.50 Aligned_cols=50 Identities=26% Similarity=0.521 Sum_probs=42.6
Q ss_pred CcccCccccccccCCCceeecCCCCCcccHhhHHHHHhc------CCCCcCCCCCCCCCC
Q 037839 108 TATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRL------HPTCPVCRTSPLPTP 161 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~------~~~CP~CR~~~~~~~ 161 (177)
+...|+||++.|..+ ..++ |||.||..|+..|+.. ...||+||+++....
T Consensus 18 ~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecw_A 18 EEVTCPICLELLKEP---VSAD-CNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGN 73 (85)
T ss_dssp TTTSCTTTCSCCSSC---EECT-TSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTC
T ss_pred cCCCCcCCChhhCcc---eeCC-CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHh
Confidence 456799999999876 3677 9999999999999987 668999999987654
No 28
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.36 E-value=1.7e-13 Score=93.52 Aligned_cols=51 Identities=27% Similarity=0.615 Sum_probs=42.2
Q ss_pred CcccCccccccccCCCceeecCCCCCcccHhhHHHHHhcC-CCCcCCCCCCCCCC
Q 037839 108 TATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLH-PTCPVCRTSPLPTP 161 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~-~~CP~CR~~~~~~~ 161 (177)
+...|+||++.|..+ +..++ |||.||..||..|+..+ ..||+||+++....
T Consensus 21 ~~~~C~IC~~~~~~p--~~~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (100)
T 3lrq_A 21 EVFRCFICMEKLRDA--RLCPH-CSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRE 72 (100)
T ss_dssp HHTBCTTTCSBCSSE--EECTT-TCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred CCCCCccCCccccCc--cccCC-CCChhhHHHHHHHHHHCcCCCCCCCCcCCHHH
Confidence 345799999999864 33366 99999999999999887 69999999986544
No 29
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.36 E-value=4.2e-13 Score=84.28 Aligned_cols=54 Identities=24% Similarity=0.519 Sum_probs=43.2
Q ss_pred cccCccccc-cccCCCce-eecCCCCCcccHhhHHHHHhc-CCCCcCCCCCCCCCCCC
Q 037839 109 ATCCSICLA-DYRSSDML-RLLPDCSHLFHVKCVDPWLRL-HPTCPVCRTSPLPTPLS 163 (177)
Q Consensus 109 ~~~C~ICl~-~f~~~~~v-~~l~~C~H~fH~~Ci~~Wl~~-~~~CP~CR~~~~~~~~~ 163 (177)
+..|+||++ .|.++... ..++ |||.||..|+..|+.+ ...||+||+++....+.
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~ 59 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFR 59 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECT-TCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCE
T ss_pred CCcCCcCCCCccCCCccCeecCC-CCCHhHHHHHHHHHHcCCCcCCCCCCccccccce
Confidence 457999999 78777543 3466 9999999999999765 46799999999776543
No 30
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=1.1e-12 Score=86.24 Aligned_cols=50 Identities=32% Similarity=0.660 Sum_probs=42.6
Q ss_pred CcccCccccccccCCCceeecCCCCCcccHhhHHHHHhc------CCCCcCCCCCCCCCC
Q 037839 108 TATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRL------HPTCPVCRTSPLPTP 161 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~------~~~CP~CR~~~~~~~ 161 (177)
+...|+||++.|..+ ..++ |||.||..|+..|+.. ...||+||..+....
T Consensus 18 ~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecv_A 18 EEVTCPICLELLTQP---LSLD-CGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPEN 73 (85)
T ss_dssp CCCCCTTTCSCCSSC---BCCS-SSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSS
T ss_pred CCCCCCCCCcccCCc---eeCC-CCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHh
Confidence 456799999999875 4567 9999999999999977 778999999998654
No 31
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.34 E-value=6.1e-13 Score=86.42 Aligned_cols=50 Identities=20% Similarity=0.449 Sum_probs=42.7
Q ss_pred CcccCccccccccCCCceeecCCCCCcccHhhHHHHHhc-CCCCcCCCCCCCCCC
Q 037839 108 TATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRL-HPTCPVCRTSPLPTP 161 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~-~~~CP~CR~~~~~~~ 161 (177)
+...|+||++.|.++ ..++ |||.||..||..|+.. +..||+||+++....
T Consensus 7 ~~~~C~IC~~~~~~P---v~~~-CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~ 57 (78)
T 1t1h_A 7 EYFRCPISLELMKDP---VIVS-TGQTYERSSIQKWLDAGHKTCPKSQETLLHAG 57 (78)
T ss_dssp SSSSCTTTSCCCSSE---EEET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCC
T ss_pred ccCCCCCccccccCC---EEcC-CCCeecHHHHHHHHHHCcCCCCCCcCCCChhh
Confidence 456799999999876 4567 9999999999999987 778999999987554
No 32
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.33 E-value=2.6e-13 Score=88.23 Aligned_cols=49 Identities=27% Similarity=0.509 Sum_probs=41.7
Q ss_pred CcccCccccccccCCCceeecCCCCCcccHhhHHHHHhc-------CCCCcCCCCCCCCC
Q 037839 108 TATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRL-------HPTCPVCRTSPLPT 160 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~-------~~~CP~CR~~~~~~ 160 (177)
+...|+||++.|..+ ..++ |||.||..|+..|+.. ...||+||.++...
T Consensus 11 ~~~~C~IC~~~~~~p---~~l~-CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 66 (79)
T 2egp_A 11 EEVTCPICLELLTEP---LSLD-CGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE 66 (79)
T ss_dssp CCCEETTTTEECSSC---CCCS-SSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS
T ss_pred cCCCCcCCCcccCCe---eECC-CCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh
Confidence 456799999999876 3467 9999999999999976 56899999998764
No 33
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.32 E-value=8.1e-13 Score=85.18 Aligned_cols=49 Identities=22% Similarity=0.572 Sum_probs=41.5
Q ss_pred CCcccCccccccccCCCceeecCCCCCcccHhhHHHHHhcC--CCCcCCCCCCC
Q 037839 107 STATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLH--PTCPVCRTSPL 158 (177)
Q Consensus 107 ~~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~--~~CP~CR~~~~ 158 (177)
....+|+||.+.+..++.+. .|+|.||..||.+||+++ .+||+||++..
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~---~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCE---TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECS---SSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCCCcCcchhhHcccCCccC---CCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 34578999999998765443 499999999999999887 78999998875
No 34
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=2.3e-12 Score=80.36 Aligned_cols=42 Identities=29% Similarity=0.677 Sum_probs=35.8
Q ss_pred CcccCccccccccCCCceeecCCCCCcccHhhHHHHHh---cCCCCcCC
Q 037839 108 TATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLR---LHPTCPVC 153 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~---~~~~CP~C 153 (177)
+...|+||++.|.++ ..++ |||.||..||..|++ ....||+|
T Consensus 19 ~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 19 EEVICPICLDILQKP---VTID-CGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCBCTTTCSBCSSC---EECT-TSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred cCCCCCcCCchhCCe---EEeC-CCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 456799999999865 4567 999999999999998 45689998
No 35
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.30 E-value=1e-12 Score=89.23 Aligned_cols=49 Identities=22% Similarity=0.632 Sum_probs=41.5
Q ss_pred cccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCCCC
Q 037839 109 ATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPLPT 160 (177)
Q Consensus 109 ~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~~~ 160 (177)
...|+||++.|..+ +..++ |||.||..||..|+..+..||+||+++...
T Consensus 22 ~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 70 (99)
T 2y43_A 22 LLRCGICFEYFNIA--MIIPQ-CSHNYCSLCIRKFLSYKTQCPTCCVTVTEP 70 (99)
T ss_dssp HTBCTTTCSBCSSE--EECTT-TCCEEEHHHHHHHHTTCCBCTTTCCBCCGG
T ss_pred CCCcccCChhhCCc--CEECC-CCCHhhHHHHHHHHHCCCCCCCCCCcCChh
Confidence 45799999999864 33336 999999999999999889999999998753
No 36
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.28 E-value=1.9e-12 Score=89.38 Aligned_cols=50 Identities=22% Similarity=0.584 Sum_probs=42.4
Q ss_pred CcccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCCCC
Q 037839 108 TATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPLPT 160 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~~~ 160 (177)
+...|+||++.|..+ +..++ |||.||..||..|+..+..||+||..+...
T Consensus 14 ~~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 14 PHLMCVLCGGYFIDA--TTIIE-CLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp GGTBCTTTSSBCSSE--EEETT-TCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred CcCCCccCChHHhCc--CEeCC-CCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 355799999999764 44447 999999999999999989999999998754
No 37
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.26 E-value=3.9e-12 Score=89.84 Aligned_cols=47 Identities=23% Similarity=0.416 Sum_probs=40.4
Q ss_pred cccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCC-CCcCCCCCCCC
Q 037839 109 ATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHP-TCPVCRTSPLP 159 (177)
Q Consensus 109 ~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~-~CP~CR~~~~~ 159 (177)
...|+||++.|..+ ..++ |||.||..||..|+..+. .||+||+++..
T Consensus 52 ~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVFRP---ITTV-CQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCSSE---EECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCCcCChHHcCc---EEee-CCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 45799999999865 4567 999999999999998544 89999999976
No 38
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.26 E-value=1.1e-12 Score=93.13 Aligned_cols=54 Identities=28% Similarity=0.646 Sum_probs=45.4
Q ss_pred CCcccCccccccccCC----CceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCCCCC
Q 037839 107 STATCCSICLADYRSS----DMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPLPTP 161 (177)
Q Consensus 107 ~~~~~C~ICl~~f~~~----~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~~~~ 161 (177)
.+...|+||++.|..+ .....++ |||.||..||..|+..+++||+||+++....
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 127 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKR 127 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEET-TSBEEEHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCCCccccccccCcceEeCC-CCChhhHHHHHHHHHcCCCCCCCCCcCChhc
Confidence 3566799999999763 3445677 9999999999999999999999999997654
No 39
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=3.6e-12 Score=77.88 Aligned_cols=42 Identities=31% Similarity=0.882 Sum_probs=35.2
Q ss_pred CcccCccccccccCCCceeecCCCCCcccHhhHHHHHh---cCCCCcCC
Q 037839 108 TATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLR---LHPTCPVC 153 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~---~~~~CP~C 153 (177)
+...|+||++.+..+ ..++ |||.||..||..|+. .+..||+|
T Consensus 14 ~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKEP---VIIE-CGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSSC---CCCS-SCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCcccCcc---EeCC-CCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 456799999999876 4567 999999999999954 46689998
No 40
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.25 E-value=5.1e-12 Score=87.41 Aligned_cols=50 Identities=26% Similarity=0.578 Sum_probs=41.6
Q ss_pred cccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCC---CCcCCCCCCCCCCC
Q 037839 109 ATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHP---TCPVCRTSPLPTPL 162 (177)
Q Consensus 109 ~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~---~CP~CR~~~~~~~~ 162 (177)
...|+||++.|..+ ..++ |||.||..||..|+..+. .||+||.++....+
T Consensus 21 ~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 73 (112)
T 1jm7_A 21 ILECPICLELIKEP---VSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSL 73 (112)
T ss_dssp HTSCSSSCCCCSSC---CBCT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTC
T ss_pred CCCCcccChhhcCe---EECC-CCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhc
Confidence 34799999999866 3467 999999999999998654 89999999876544
No 41
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.25 E-value=6.8e-12 Score=83.94 Aligned_cols=48 Identities=23% Similarity=0.566 Sum_probs=40.0
Q ss_pred CcccCccccccccCCCceeecCCCCCcccHhhHHHHHhcC--CCCcCCCCCCC
Q 037839 108 TATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLH--PTCPVCRTSPL 158 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~--~~CP~CR~~~~ 158 (177)
+...|+||++.|..+ ..++.|||.||..||..|+... ..||+||.++.
T Consensus 12 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 12 DELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp TTTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred cCCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 456799999999876 3555599999999999999653 58999999974
No 42
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.21 E-value=6.3e-12 Score=93.00 Aligned_cols=48 Identities=29% Similarity=0.688 Sum_probs=40.8
Q ss_pred cccCccccccccCCCceeecCCCCCcccHhhHHHHHhc-CCCCcCCCCCCCC
Q 037839 109 ATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRL-HPTCPVCRTSPLP 159 (177)
Q Consensus 109 ~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~-~~~CP~CR~~~~~ 159 (177)
...|+||++.|..+ +..++ |||.||..||..|+.. +..||+||.++..
T Consensus 54 ~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 54 ELMCPICLDMLKNT--MTTKE-CLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHBCTTTSSBCSSE--EEETT-TCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCcccChHhhCc--CEeCC-CCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 45799999999864 44457 9999999999999987 7789999999854
No 43
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.21 E-value=4.9e-12 Score=88.27 Aligned_cols=54 Identities=31% Similarity=0.671 Sum_probs=44.3
Q ss_pred cccCccccccccCCCceeecCCCCCcccHhhHHHHHhc-CCCCcCCCCCCCCCCCCCCc
Q 037839 109 ATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRL-HPTCPVCRTSPLPTPLSTPL 166 (177)
Q Consensus 109 ~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~-~~~CP~CR~~~~~~~~~~~~ 166 (177)
...|+||++.|..+ ..++ |||.||..||..|+.. +..||+||+++....+..+.
T Consensus 23 ~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~ 77 (116)
T 1rmd_A 23 SISCQICEHILADP---VETS-CKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPV 77 (116)
T ss_dssp HTBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCC
T ss_pred CCCCCCCCcHhcCc---EEcC-CCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccH
Confidence 35699999998765 3467 9999999999999987 67899999999876554443
No 44
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.18 E-value=1.8e-11 Score=89.38 Aligned_cols=48 Identities=19% Similarity=0.409 Sum_probs=41.3
Q ss_pred cccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCC-CCcCCCCCCCCC
Q 037839 109 ATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHP-TCPVCRTSPLPT 160 (177)
Q Consensus 109 ~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~-~CP~CR~~~~~~ 160 (177)
...|+||++.|..+ ..++ |||.||..||..|+.... .||+||.++...
T Consensus 78 ~~~C~IC~~~~~~p---v~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELVYQP---VTTE-CFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBCSSE---EECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CCEeecCChhhcCC---EEcC-CCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 45799999998865 4577 999999999999998654 899999999876
No 45
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.17 E-value=9.8e-12 Score=87.12 Aligned_cols=50 Identities=30% Similarity=0.547 Sum_probs=42.4
Q ss_pred CcccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCC-CCcCCCCCCCCCC
Q 037839 108 TATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHP-TCPVCRTSPLPTP 161 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~-~CP~CR~~~~~~~ 161 (177)
+...|+||++.|..+ ..++ |||.||..||..|+.... .||+||.++....
T Consensus 17 ~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 67 (118)
T 3hct_A 17 SKYECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLENQ 67 (118)
T ss_dssp GGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCcCChhhcCe---EECC-cCChhhHHHHHHHHhhCCCCCCCCCCCcCHHh
Confidence 456799999999876 4567 999999999999998755 9999999987644
No 46
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.14 E-value=1.5e-11 Score=77.14 Aligned_cols=47 Identities=23% Similarity=0.534 Sum_probs=39.3
Q ss_pred CcccCccccccccCCCceeec--CCCCCc-ccHhhHHHHHhcCCCCcCCCCCCC
Q 037839 108 TATCCSICLADYRSSDMLRLL--PDCSHL-FHVKCVDPWLRLHPTCPVCRTSPL 158 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~~v~~l--~~C~H~-fH~~Ci~~Wl~~~~~CP~CR~~~~ 158 (177)
+...|+||++.+.+. ..+ | |||. |+.+|+..|...+..||+||+++.
T Consensus 7 ~~~~C~IC~~~~~~~---~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKNG---CIVHGK-TGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSCE---EEEETT-EEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCCE---EEECCC-CCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 345799999986543 343 8 9999 899999999998889999999884
No 47
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.14 E-value=7.1e-12 Score=87.32 Aligned_cols=47 Identities=26% Similarity=0.596 Sum_probs=40.1
Q ss_pred cccCccccccccCCCceeecCCCCCcccHhhHHHHHhc-CCCCcCCCCCCCC
Q 037839 109 ATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRL-HPTCPVCRTSPLP 159 (177)
Q Consensus 109 ~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~-~~~CP~CR~~~~~ 159 (177)
...|+||++.|..+ ..++ |||.||..||..|+.. +..||+||..+..
T Consensus 15 ~~~C~iC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 15 ECQCGICMEILVEP---VTLP-CNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHBCTTTCSBCSSC---EECT-TSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCccCCcccCce---eEcC-CCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 45799999999876 4567 9999999999999976 6689999998853
No 48
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.14 E-value=2.2e-11 Score=74.25 Aligned_cols=48 Identities=25% Similarity=0.578 Sum_probs=39.5
Q ss_pred CCcccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCCCCC
Q 037839 107 STATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPLPTP 161 (177)
Q Consensus 107 ~~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~~~~ 161 (177)
.+...|+||++.|..+ +.++ |||.||..|+..| ...||+||+++....
T Consensus 4 ~~~~~C~IC~~~~~~p---~~l~-CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~ 51 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCP---KLLP-CLHTLCSGCLEAS---GMQCPICQAPWPLGA 51 (56)
T ss_dssp CCCSSCSSSCSSCBCC---SCST-TSCCSBTTTCSSS---SSSCSSCCSSSSCCS
T ss_pred ccCCCceEeCCccCCe---EEcC-CCCcccHHHHccC---CCCCCcCCcEeecCC
Confidence 3456799999999876 5677 9999999999874 568999999986543
No 49
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.12 E-value=1.2e-10 Score=75.90 Aligned_cols=56 Identities=18% Similarity=0.350 Sum_probs=42.6
Q ss_pred CCcccCccccccccCCCce-eecCCCCCcccHhhHHHHHhc-CCCCcCCCCCCCCCCCC
Q 037839 107 STATCCSICLADYRSSDML-RLLPDCSHLFHVKCVDPWLRL-HPTCPVCRTSPLPTPLS 163 (177)
Q Consensus 107 ~~~~~C~ICl~~f~~~~~v-~~l~~C~H~fH~~Ci~~Wl~~-~~~CP~CR~~~~~~~~~ 163 (177)
.++..|+||++.+...+.. .-++ |||.||..|+..|+.. ...||.||+++...++.
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~-CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~ 66 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCT-CGYQICRFCWHRIRTDENGLCPACRKPYPEDPAV 66 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSST-TSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSSC
T ss_pred ccCCcCCccCccCccccccccccC-CCCCcCHHHHHHHHhcCCCCCCCCCCccCCCchh
Confidence 3556799999998654432 2234 9999999999998743 56899999999876543
No 50
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.11 E-value=2.2e-11 Score=76.13 Aligned_cols=49 Identities=20% Similarity=0.420 Sum_probs=39.1
Q ss_pred CcccCccccccccCCCceeecCCCCCc-ccHhhHHHHHhcCCCCcCCCCCCC
Q 037839 108 TATCCSICLADYRSSDMLRLLPDCSHL-FHVKCVDPWLRLHPTCPVCRTSPL 158 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~~v~~l~~C~H~-fH~~Ci~~Wl~~~~~CP~CR~~~~ 158 (177)
....|+||++.+.+. .+..+| |||. |+..|+..|.+.+..||+||+++.
T Consensus 6 ~~~~C~IC~~~~~~~-~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPRDG-NIIHGR-TGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBSCE-EEEETT-EEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred cCCCCcccCCcCCCe-EEEecC-CCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 345799999986543 122348 9999 999999999988889999999884
No 51
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.10 E-value=4.4e-11 Score=79.14 Aligned_cols=49 Identities=14% Similarity=0.041 Sum_probs=43.2
Q ss_pred CcccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCCCC
Q 037839 108 TATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPLPT 160 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~~~ 160 (177)
+...|+||++-|.++ ..++ |||.|+..||..|+..+.+||+||.++...
T Consensus 13 ~~~~CpI~~~~m~dP---V~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 61 (85)
T 2kr4_A 13 DEFRDPLMDTLMTDP---VRLP-SGTVMDRSIILRHLLNSPTDPFNRQMLTES 61 (85)
T ss_dssp TTTBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred hheECcccCchhcCC---eECC-CCCEECHHHHHHHHhcCCCCCCCcCCCChH
Confidence 456799999999987 5677 999999999999999888999999988654
No 52
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.09 E-value=9.3e-11 Score=97.21 Aligned_cols=49 Identities=31% Similarity=0.757 Sum_probs=41.8
Q ss_pred CcccCccccccccCCCceeecCCCCCcccHhhHHHHHh-cCCCCcCCCCCCCCC
Q 037839 108 TATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLR-LHPTCPVCRTSPLPT 160 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~-~~~~CP~CR~~~~~~ 160 (177)
....|+||++.+..+ ..+| |||.||..|+..|+. .+..||+||+++...
T Consensus 331 ~~~~C~ICle~~~~p---v~lp-CGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 331 TFQLCKICAENDKDV---KIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSSBCTTTSSSBCCE---EEET-TCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCCccCcCCCCe---EEeC-CCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 346899999998653 6777 999999999999998 678999999998754
No 53
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.08 E-value=5.8e-11 Score=80.96 Aligned_cols=50 Identities=14% Similarity=0.050 Sum_probs=43.9
Q ss_pred CcccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCCCCC
Q 037839 108 TATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPLPTP 161 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~~~~ 161 (177)
+...|+||++-|.+| ..++ |||.|+..||..|+..+.+||+||.++....
T Consensus 28 ~~~~CpI~~~~m~dP---V~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~ 77 (100)
T 2kre_A 28 DEFRDPLMDTLMTDP---VRLP-SGTIMDRSIILRHLLNSPTDPFNRQTLTESM 77 (100)
T ss_dssp TTTBCTTTCSBCSSE---EEET-TTEEEEHHHHHHHTTSCSBCSSSCCBCCTTS
T ss_pred HhhCCcCccCcccCC---eECC-CCCEEchHHHHHHHHcCCCCCCCCCCCChhh
Confidence 466899999999987 5677 9999999999999998889999999987543
No 54
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.06 E-value=3.6e-11 Score=86.91 Aligned_cols=50 Identities=22% Similarity=0.462 Sum_probs=42.0
Q ss_pred CCcccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCC-CCcCCCCCCCCC
Q 037839 107 STATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHP-TCPVCRTSPLPT 160 (177)
Q Consensus 107 ~~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~-~CP~CR~~~~~~ 160 (177)
.+...|+||++.|..+ ..++ |||.||..||..|+.... .||+||.++...
T Consensus 29 ~~~~~C~IC~~~~~~p---v~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 79 (141)
T 3knv_A 29 EAKYLCSACRNVLRRP---FQAQ-CGHRYCSFCLASILSSGPQNCAACVHEGIYE 79 (141)
T ss_dssp CGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHGGGSCEECHHHHHTTCCC
T ss_pred CcCcCCCCCChhhcCc---EECC-CCCccCHHHHHHHHhcCCCCCCCCCCccccc
Confidence 4566899999999877 4466 999999999999998654 899999987544
No 55
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.05 E-value=1.1e-10 Score=79.27 Aligned_cols=50 Identities=16% Similarity=0.034 Sum_probs=43.6
Q ss_pred CcccCccccccccCCCceeecCCCC-CcccHhhHHHHHhcCCCCcCCCCCCCCCC
Q 037839 108 TATCCSICLADYRSSDMLRLLPDCS-HLFHVKCVDPWLRLHPTCPVCRTSPLPTP 161 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~~v~~l~~C~-H~fH~~Ci~~Wl~~~~~CP~CR~~~~~~~ 161 (177)
+...|+||++-|.++ ..++ || |.|+..||..|+..+.+||+||.++....
T Consensus 21 ~~~~CpI~~~~m~dP---V~~~-cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~ 71 (98)
T 1wgm_A 21 DEFLDPIMSTLMCDP---VVLP-SSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQ 71 (98)
T ss_dssp TTTBCTTTCSBCSSE---EECT-TTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTT
T ss_pred HhcCCcCccccccCC---eECC-CCCeEECHHHHHHHHHhCCCCCCCCCCCChhh
Confidence 456799999999987 4677 99 99999999999998889999999987543
No 56
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.05 E-value=5.1e-11 Score=83.29 Aligned_cols=46 Identities=33% Similarity=0.649 Sum_probs=39.3
Q ss_pred cccCccccccccCCCceeec-CCCCCcccHhhHHHHHhcCCCCcCCCCCCCCC
Q 037839 109 ATCCSICLADYRSSDMLRLL-PDCSHLFHVKCVDPWLRLHPTCPVCRTSPLPT 160 (177)
Q Consensus 109 ~~~C~ICl~~f~~~~~v~~l-~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~~~ 160 (177)
...|+||++.|..+ ..+ + |||.||..||..|+. ..||+||.++...
T Consensus 22 ~~~C~IC~~~~~~p---v~~~~-CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~ 68 (117)
T 1jm7_B 22 LLRCSRCTNILREP---VCLGG-CEHIFCSNCVSDCIG--TGCPVCYTPAWIQ 68 (117)
T ss_dssp TTSCSSSCSCCSSC---BCCCS-SSCCBCTTTGGGGTT--TBCSSSCCBCSCS
T ss_pred CCCCCCCChHhhCc---cEeCC-CCCHHHHHHHHHHhc--CCCcCCCCcCccc
Confidence 45799999999876 445 6 999999999999987 7899999998544
No 57
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=99.01 E-value=7.7e-11 Score=95.70 Aligned_cols=53 Identities=23% Similarity=0.560 Sum_probs=40.4
Q ss_pred CCCcccCccccccccCCC----ceeecCCCCCcccHhhHHHHHhcC-----------CCCcCCCCCCC
Q 037839 106 DSTATCCSICLADYRSSD----MLRLLPDCSHLFHVKCVDPWLRLH-----------PTCPVCRTSPL 158 (177)
Q Consensus 106 ~~~~~~C~ICl~~f~~~~----~v~~l~~C~H~fH~~Ci~~Wl~~~-----------~~CP~CR~~~~ 158 (177)
+....+|+||++.+..+. .+...+.|||.||..|+..|+++. ..||+||+++.
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred ccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 346778999999998732 222333499999999999999752 36999999774
No 58
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.99 E-value=7.8e-11 Score=75.87 Aligned_cols=43 Identities=28% Similarity=0.671 Sum_probs=36.5
Q ss_pred cccCccccccccCCCceeecCCCCCc-ccHhhHHHHHhcCCCCcCCCCCCCC
Q 037839 109 ATCCSICLADYRSSDMLRLLPDCSHL-FHVKCVDPWLRLHPTCPVCRTSPLP 159 (177)
Q Consensus 109 ~~~C~ICl~~f~~~~~v~~l~~C~H~-fH~~Ci~~Wl~~~~~CP~CR~~~~~ 159 (177)
...|+||++.+.++ ..+| |||. ||..|+..| ..||+||+++..
T Consensus 24 ~~~C~iC~~~~~~~---~~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 24 EKLCKICMDRNIAI---VFVP-CGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HTBCTTTSSSBCCE---EEET-TCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred CCCCCCCCCCCCCE---EEcC-CCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 45799999997653 5678 9999 999999998 789999998854
No 59
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.89 E-value=5.9e-10 Score=82.64 Aligned_cols=51 Identities=29% Similarity=0.540 Sum_probs=42.5
Q ss_pred CCcccCccccccccCCCceeecCCCCCcccHhhHHHHHhcC-CCCcCCCCCCCCCC
Q 037839 107 STATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLH-PTCPVCRTSPLPTP 161 (177)
Q Consensus 107 ~~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~-~~CP~CR~~~~~~~ 161 (177)
.+...|+||++.|..+ ..++ |||.||..||..|+... ..||+||.++....
T Consensus 16 ~~~~~C~IC~~~~~~p---v~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 67 (170)
T 3hcs_A 16 ESKYECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLENQ 67 (170)
T ss_dssp CGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCChhhcCc---EECC-CCCHHHHHHHHHHHHhCCCCCCCCccCcchhh
Confidence 3456799999999876 4567 99999999999999764 48999999987654
No 60
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.88 E-value=1.8e-09 Score=66.68 Aligned_cols=49 Identities=20% Similarity=0.602 Sum_probs=37.6
Q ss_pred CCcccCccccccccCCCceeecCCCC--C---cccHhhHHHHHhc--CCCCcCCCCCCCC
Q 037839 107 STATCCSICLADYRSSDMLRLLPDCS--H---LFHVKCVDPWLRL--HPTCPVCRTSPLP 159 (177)
Q Consensus 107 ~~~~~C~ICl~~f~~~~~v~~l~~C~--H---~fH~~Ci~~Wl~~--~~~CP~CR~~~~~ 159 (177)
.+...|.||+++. ++.+ ++| |. | .||..|+..|+.. +.+||+||.++..
T Consensus 4 ~~~~~CrIC~~~~--~~~l-~~P-C~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 4 EDVPVCWICNEEL--GNER-FRA-CGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp CSCCEETTTTEEC--SCCC-CCS-CCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCEeEEeecCC--CCce-ecC-cCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 3566899999984 3333 577 65 4 8999999999964 5689999998753
No 61
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.87 E-value=1.1e-09 Score=86.58 Aligned_cols=51 Identities=18% Similarity=0.229 Sum_probs=42.6
Q ss_pred CCcccCccccccccCCCceeecCCCCCcccHhhHHHHHhcC-CCCcCCCCCCCCCC
Q 037839 107 STATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLH-PTCPVCRTSPLPTP 161 (177)
Q Consensus 107 ~~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~-~~CP~CR~~~~~~~ 161 (177)
.....|+||++-|.+| .+++ |||.||..||..|+..+ .+||+||.++....
T Consensus 206 ~~~~~c~i~~~~~~dP---v~~~-~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~ 257 (281)
T 2c2l_A 206 PDYLCGKISFELMREP---CITP-SGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQ 257 (281)
T ss_dssp CSTTBCTTTCSBCSSE---EECS-SCCEEETTHHHHHHHHTCSSCTTTCCCCCGGG
T ss_pred CcccCCcCcCCHhcCC---eECC-CCCEECHHHHHHHHHHCCCCCcCCCCCCchhc
Confidence 3567899999999987 4677 99999999999999764 45999999986543
No 62
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.86 E-value=1.8e-09 Score=68.40 Aligned_cols=45 Identities=29% Similarity=0.620 Sum_probs=37.0
Q ss_pred CCcccCccccccccCCCceeecCCCCCc-ccHhhHHHHHhcCCCCcCCCCCCCC
Q 037839 107 STATCCSICLADYRSSDMLRLLPDCSHL-FHVKCVDPWLRLHPTCPVCRTSPLP 159 (177)
Q Consensus 107 ~~~~~C~ICl~~f~~~~~v~~l~~C~H~-fH~~Ci~~Wl~~~~~CP~CR~~~~~ 159 (177)
.+...|.||++.+. .+..+| |||. ||..|+.. ...||+||+++..
T Consensus 13 ~~~~~C~IC~~~~~---~~v~~p-CgH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGTV---NWVLLP-CRHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSCC---CCEETT-TTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred CCCCCCCCcCcCCC---CEEEEC-CCChhhhHHHHhc----CCCCCCCCcchhc
Confidence 34567999999854 357888 9999 99999984 4789999999865
No 63
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.84 E-value=9.5e-10 Score=73.97 Aligned_cols=49 Identities=14% Similarity=0.381 Sum_probs=39.0
Q ss_pred CcccCccccccccCCCceeecCCCCCcccHhhHHHHHhcC------CCCcC--CCCC-CCC
Q 037839 108 TATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLH------PTCPV--CRTS-PLP 159 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~------~~CP~--CR~~-~~~ 159 (177)
....|+||++.|.+| | .++.|||.|+..||..|+..+ .+||+ |+.. +..
T Consensus 6 ~~~~CPI~~~~~~dP--V-~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~ 63 (94)
T 2yu4_A 6 SGFTCPITKEEMKKP--V-KNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRK 63 (94)
T ss_dssp SCCBCTTTCSBCSSE--E-EESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCG
T ss_pred cEeECcCcCchhcCC--E-EcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCH
Confidence 456799999999976 3 443499999999999999753 48999 9876 543
No 64
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.83 E-value=1.6e-09 Score=69.70 Aligned_cols=43 Identities=28% Similarity=0.676 Sum_probs=35.3
Q ss_pred cccCccccccccCCCceeecCCCCCc-ccHhhHHHHHhcCCCCcCCCCCCCC
Q 037839 109 ATCCSICLADYRSSDMLRLLPDCSHL-FHVKCVDPWLRLHPTCPVCRTSPLP 159 (177)
Q Consensus 109 ~~~C~ICl~~f~~~~~v~~l~~C~H~-fH~~Ci~~Wl~~~~~CP~CR~~~~~ 159 (177)
...|+||++.+..+ ..+| |||. ||..|+.. ...||+||+++..
T Consensus 25 ~~~C~IC~~~~~~~---~~~p-CgH~~~C~~C~~~----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRNIAI---VFVP-CGHLVTCKQCAEA----VDKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSCCCB---CCSS-SCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred CCCCCcCCCCCCCE---EEec-CCCHHHHHHHhhC----CCCCccCCceecC
Confidence 34699999997654 5677 9999 99999964 3789999999865
No 65
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.80 E-value=1.7e-09 Score=72.53 Aligned_cols=48 Identities=25% Similarity=0.762 Sum_probs=39.8
Q ss_pred CcccCccccccccCCCceeecCCCCCcccHhhHHHHHhc--------CCCCcC--CCCC
Q 037839 108 TATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRL--------HPTCPV--CRTS 156 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~--------~~~CP~--CR~~ 156 (177)
....|+||++++..++.+...+ |||.||.+|+..++.. ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~-CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETT-TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCC-CCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 3557999999998877666667 9999999999999853 136999 9988
No 66
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.74 E-value=6.7e-09 Score=77.66 Aligned_cols=50 Identities=18% Similarity=0.226 Sum_probs=42.2
Q ss_pred CCcccCccccccccCCCceeecCCCCCcccHhhHHHHHhcC-CCCcCCCCCCCCC
Q 037839 107 STATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLH-PTCPVCRTSPLPT 160 (177)
Q Consensus 107 ~~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~-~~CP~CR~~~~~~ 160 (177)
.+...|+||++-|.+| ..++ |||.|+..||..|+..+ .+||+||.++...
T Consensus 104 p~~f~CPI~~elm~DP---V~~~-~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~ 154 (179)
T 2f42_A 104 PDYLCGKISFELMREP---CITP-SGITYDRKDIEEHLQRVGHFDPVTRSPLTQD 154 (179)
T ss_dssp CGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred cHhhcccCccccCCCC---eECC-CCCEECHHHHHHHHHhCCCCCCCCcCCCChh
Confidence 4567899999999977 4567 99999999999999764 4799999988654
No 67
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.71 E-value=3.2e-09 Score=69.16 Aligned_cols=44 Identities=27% Similarity=0.656 Sum_probs=36.4
Q ss_pred cccCccccccccCCCceeecCCCCCc-ccHhhHHHHHhcCCCCcCCCCCCCCC
Q 037839 109 ATCCSICLADYRSSDMLRLLPDCSHL-FHVKCVDPWLRLHPTCPVCRTSPLPT 160 (177)
Q Consensus 109 ~~~C~ICl~~f~~~~~v~~l~~C~H~-fH~~Ci~~Wl~~~~~CP~CR~~~~~~ 160 (177)
...|+||++.+.. ...+| |||. |+..|+..| ..||+||+++...
T Consensus 18 ~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 18 AMLCMVCCEEEIN---STFCP-CGHTVCCESCAAQL----QSCPVCRSRVEHV 62 (79)
T ss_dssp HTBCTTTSSSBCC---EEEET-TCBCCBCHHHHTTC----SBCTTTCCBCCEE
T ss_pred CCEeEEeCcccCc---EEEEC-CCCHHHHHHHHHhc----CcCCCCCchhhCe
Confidence 3479999998654 46788 9999 999999877 4899999998753
No 68
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.55 E-value=1.2e-08 Score=83.63 Aligned_cols=43 Identities=28% Similarity=0.735 Sum_probs=36.7
Q ss_pred cccCccccccccCCCceeecCCCCCc-ccHhhHHHHHhcCCCCcCCCCCCCC
Q 037839 109 ATCCSICLADYRSSDMLRLLPDCSHL-FHVKCVDPWLRLHPTCPVCRTSPLP 159 (177)
Q Consensus 109 ~~~C~ICl~~f~~~~~v~~l~~C~H~-fH~~Ci~~Wl~~~~~CP~CR~~~~~ 159 (177)
...|+||++.+..+ ..+| |||. ||..|+..| ..||+||+++..
T Consensus 295 ~~~C~IC~~~~~~~---v~lp-CgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 295 ERTCKVCMDKEVSV---VFIP-CGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp TCBCTTTSSSBCCE---EEET-TCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred CCCCCccCCcCCce---EEcC-CCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 46799999997654 5678 9999 999999988 689999998853
No 69
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.54 E-value=1.6e-08 Score=79.51 Aligned_cols=51 Identities=22% Similarity=0.438 Sum_probs=41.0
Q ss_pred CcccCccccccccCCCceeecCCCCCcccHhhHHHHHhcC--CCCcC--CCCCCCCCC
Q 037839 108 TATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLH--PTCPV--CRTSPLPTP 161 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~--~~CP~--CR~~~~~~~ 161 (177)
....|+||++.|..| |+... |||.|+..||..|+..+ ..||+ ||..+....
T Consensus 180 ~el~CPIcl~~f~DP--Vts~~-CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~d 234 (267)
T 3htk_C 180 IELTCPITCKPYEAP--LISRK-CNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRD 234 (267)
T ss_dssp CCSBCTTTSSBCSSE--EEESS-SCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGG
T ss_pred eeeECcCccCcccCC--eeeCC-CCCcccHHHHHHHHHhCCCCCCCcccccCcCchhh
Confidence 345799999999876 44445 99999999999999764 47999 999876543
No 70
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.51 E-value=2.9e-08 Score=61.37 Aligned_cols=48 Identities=13% Similarity=0.182 Sum_probs=41.0
Q ss_pred ccCccccccccCCCceeec-CCCCCcccHhhHHHHHhcCCCCcCCCCCCCCCC
Q 037839 110 TCCSICLADYRSSDMLRLL-PDCSHLFHVKCVDPWLRLHPTCPVCRTSPLPTP 161 (177)
Q Consensus 110 ~~C~ICl~~f~~~~~v~~l-~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~~~~ 161 (177)
..|+||++-+.++ | .+ + +||+|...||.+|+.++.+||+.+.++....
T Consensus 4 ~~CpIs~~~m~dP--V-~~~~-sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~ 52 (61)
T 2bay_A 4 MLCAISGKVPRRP--V-LSPK-SRTIFEKSLLEQYVKDTGNDPITNEPLSIEE 52 (61)
T ss_dssp CCCTTTCSCCSSE--E-EETT-TTEEEEHHHHHHHHHHHSBCTTTCCBCCGGG
T ss_pred EEecCCCCCCCCC--E-EeCC-CCcEEcHHHHHHHHHhCCCCcCCcCCCChhh
Confidence 4699999999976 3 45 5 9999999999999988888999999886543
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.36 E-value=2.7e-07 Score=61.89 Aligned_cols=46 Identities=24% Similarity=0.535 Sum_probs=36.6
Q ss_pred cCccccccccCCCceeecCCCCCcccHhhHHHHHh-cCCCCcCCCCCCCC
Q 037839 111 CCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLR-LHPTCPVCRTSPLP 159 (177)
Q Consensus 111 ~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~-~~~~CP~CR~~~~~ 159 (177)
.|.+|--.+. ...|+.| |+|+||.+|+..|.+ +.++||.|+.++..
T Consensus 3 fC~~C~~Pi~--iygRmIP-CkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIK--VYGRMIP-CKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCS--EEEEEET-TCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeE--EEeeecc-ccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 3677755543 4568898 999999999999985 46789999998864
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=98.00 E-value=4.7e-06 Score=64.93 Aligned_cols=48 Identities=21% Similarity=0.543 Sum_probs=38.9
Q ss_pred CCcccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCC--CCcCCCCCC
Q 037839 107 STATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHP--TCPVCRTSP 157 (177)
Q Consensus 107 ~~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~--~CP~CR~~~ 157 (177)
.....|.||.+-...+..+ +.|+|.||..|+..|++.+. .||.|+.+.
T Consensus 178 ~~i~~C~iC~~iv~~g~~C---~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W 227 (238)
T 3nw0_A 178 DAVKICNICHSLLIQGQSC---ETCGIRMHLPCVAKYFQSNAEPRCPHCNDYW 227 (238)
T ss_dssp TTCCBCTTTCSBCSSCEEC---SSSCCEECHHHHHHHTTTCSSCBCTTTCCBC
T ss_pred CCCCcCcchhhHHhCCccc---CccChHHHHHHHHHHHHhCCCCCCCCCCCCC
Confidence 3577899999998876332 24999999999999997654 899999874
No 73
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=96.67 E-value=0.0017 Score=40.26 Aligned_cols=51 Identities=27% Similarity=0.601 Sum_probs=36.9
Q ss_pred CcccCccccccccCCCceeecCCCCCcccHhhHHHHHhc----CCCCcCCCCCCCCCCC
Q 037839 108 TATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRL----HPTCPVCRTSPLPTPL 162 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~----~~~CP~CR~~~~~~~~ 162 (177)
....|.||.+. ++.+.-- .|...||..|+...+.. ...||.|++...+.+.
T Consensus 11 ~~~~C~vC~~~---~~ll~Cd-~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~p~P~ 65 (66)
T 2lri_C 11 PGARCGVCGDG---TDVLRCT-HCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVTPAPV 65 (66)
T ss_dssp TTCCCTTTSCC---TTCEECS-SSCCEECHHHHCTTTCCCCSSSCCCTTTTTCCCCCCC
T ss_pred CCCCcCCCCCC---CeEEECC-CCCCceecccCCCccCcCCCCCEECccccCCCccCCC
Confidence 34569999754 4444433 49999999999887754 3479999987766654
No 74
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=96.01 E-value=0.003 Score=41.58 Aligned_cols=49 Identities=22% Similarity=0.596 Sum_probs=37.0
Q ss_pred CCcccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCCCCC
Q 037839 107 STATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPLPTP 161 (177)
Q Consensus 107 ~~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~~~~ 161 (177)
.....|..|+-+++. ......|.+|..|+...+..+..||+|..++ ++.
T Consensus 26 ~G~~nCKsCWf~~k~-----LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pL-Ptk 74 (99)
T 2ko5_A 26 LGPQFCKSCWFENKG-----LVECNNHYLCLNCLTLLLSVSNRCPICKMPL-PTK 74 (99)
T ss_dssp SCCCCCCSSCSCCSS-----EEECSSCEEEHHHHHHTCSSSSEETTTTEEC-CCC
T ss_pred cCcccChhhccccCC-----eeeecchhhHHHHHHHHHhhccCCcccCCcC-Ccc
Confidence 345679999877442 2221359999999999999999999999877 443
No 75
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.42 E-value=0.011 Score=39.25 Aligned_cols=34 Identities=15% Similarity=0.388 Sum_probs=26.0
Q ss_pred cccCccccccccCCCceeecCCCCCcccHhhHHHH
Q 037839 109 ATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPW 143 (177)
Q Consensus 109 ~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~W 143 (177)
+..|.||++.+..+....-+. |+|.|+..|+..+
T Consensus 3 e~~C~~C~~~~~~~av~~C~~-C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVT-CEVSYCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETT-TTEEECHHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCc-CChHHhHHHCHHH
Confidence 456999998754444444576 9999999999984
No 76
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=95.27 E-value=0.031 Score=36.00 Aligned_cols=34 Identities=18% Similarity=0.575 Sum_probs=22.7
Q ss_pred CcccCccccccccCCCceeecCCCCCcccHhhHHHH
Q 037839 108 TATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPW 143 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~W 143 (177)
.+..|.||- .|..++....- .|+-+||..|+.+.
T Consensus 14 ~D~~C~VC~-~~t~~~l~pCR-vC~RvfH~~CL~r~ 47 (89)
T 1wil_A 14 NDEMCDVCE-VWTAESLFPCR-VCTRVFHDGCLRRM 47 (89)
T ss_dssp CSCCCTTTC-CCCSSCCSSCS-SSSSCCCHHHHHHH
T ss_pred CCcccCccc-cccccceeccc-cccccccHhhcccc
Confidence 345699994 33334332222 39999999999986
No 77
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=94.43 E-value=0.05 Score=30.76 Aligned_cols=30 Identities=20% Similarity=0.293 Sum_probs=18.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHhhccCcchh
Q 037839 23 YGIGVSVGILILITTITLASYFCTRGQQQQ 52 (177)
Q Consensus 23 ~~i~i~l~il~li~~i~l~~~~~~r~~~~~ 52 (177)
+..+++.|+++++++...+++|.+|+++++
T Consensus 12 IA~gVVgGv~~v~ii~~~~~~~~RRRr~~~ 41 (44)
T 2l2t_A 12 IAAGVIGGLFILVIVGLTFAVYVRRKSIKK 41 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCSSC
T ss_pred EEEeehHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 444566666666666666666666665443
No 78
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=94.05 E-value=0.061 Score=30.42 Aligned_cols=34 Identities=18% Similarity=0.242 Sum_probs=19.5
Q ss_pred CCCCCccchhhHHHHHHHHHHHHHHHHHhhccCcch
Q 037839 16 SNIGGFGYGIGVSVGILILITTITLASYFCTRGQQQ 51 (177)
Q Consensus 16 ~~~~~~~~~i~i~l~il~li~~i~l~~~~~~r~~~~ 51 (177)
|+.+. ++.+++.|+++++++..++++|.+|++++
T Consensus 8 s~~~~--IA~gVVgGv~~~~ii~~~~~~~~RRr~~~ 41 (44)
T 2ks1_B 8 PKIPS--IATGMVGALLLLLVVALGIGLFMRRRHIV 41 (44)
T ss_dssp SCSSS--STHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCcce--EEeehhHHHHHHHHHHHHHHHHhhhhHhh
Confidence 44444 44455666666666666666666666543
No 79
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=92.61 E-value=0.022 Score=34.68 Aligned_cols=48 Identities=25% Similarity=0.518 Sum_probs=32.8
Q ss_pred CcccCccccccccCCC-ceeecCCCCCcccHhhHHHHHh-----cCCCCcCCCCC
Q 037839 108 TATCCSICLADYRSSD-MLRLLPDCSHLFHVKCVDPWLR-----LHPTCPVCRTS 156 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~-~v~~l~~C~H~fH~~Ci~~Wl~-----~~~~CP~CR~~ 156 (177)
+...|+||...+..+. .|.-- .|...||..|+..-.. ....||.|+..
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd-~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCD-LCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECS-SSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCccCCCCCEEEcc-CCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 4567999998875433 44444 4999999999854321 34679999754
No 80
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=92.36 E-value=0.05 Score=40.42 Aligned_cols=48 Identities=27% Similarity=0.589 Sum_probs=34.3
Q ss_pred cccCccccccccCCC----ceeecCCCCCcccHhhHHH------HHh-----cCCCCcCCCCCC
Q 037839 109 ATCCSICLADYRSSD----MLRLLPDCSHLFHVKCVDP------WLR-----LHPTCPVCRTSP 157 (177)
Q Consensus 109 ~~~C~ICl~~f~~~~----~v~~l~~C~H~fH~~Ci~~------Wl~-----~~~~CP~CR~~~ 157 (177)
+..|+||...|..++ .|..- .|...||..|... -+. ....||.|+..-
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd-~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCG-KCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECT-TTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred cCcCCCCcCccCCcccCCCeEECC-CCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 346999999998876 34444 4999999999732 111 167999998754
No 81
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=91.55 E-value=0.12 Score=29.10 Aligned_cols=28 Identities=29% Similarity=0.355 Sum_probs=14.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhccCcch
Q 037839 24 GIGVSVGILILITTITLASYFCTRGQQQ 51 (177)
Q Consensus 24 ~i~i~l~il~li~~i~l~~~~~~r~~~~ 51 (177)
..+.++|+++++++.+.+++|.+|++++
T Consensus 14 Ia~~vVGvll~vi~~l~~~~~~RRR~~~ 41 (44)
T 2jwa_A 14 IISAVVGILLVVVLGVVFGILIKRRQQK 41 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCSC
T ss_pred hHHHHHHHHHHHHHHHHHHhheehhhhh
Confidence 4456666555544444445555555433
No 82
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=89.97 E-value=0.34 Score=30.62 Aligned_cols=50 Identities=26% Similarity=0.452 Sum_probs=32.8
Q ss_pred CcccCcccccccc-CCCceeecCCCCCcccHhhHHHHH-----hcCCCCcCCCCCCCC
Q 037839 108 TATCCSICLADYR-SSDMLRLLPDCSHLFHVKCVDPWL-----RLHPTCPVCRTSPLP 159 (177)
Q Consensus 108 ~~~~C~ICl~~f~-~~~~v~~l~~C~H~fH~~Ci~~Wl-----~~~~~CP~CR~~~~~ 159 (177)
....| ||...+. .+..|..-. |...||..|+..-- .....||.|+....+
T Consensus 11 ~~~~C-~C~~~~d~~~~MIqCd~-C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~~ 66 (79)
T 1wep_A 11 VPVYC-LCRQPYNVNHFMIECGL-CQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFGP 66 (79)
T ss_dssp CCCCS-TTSCSCCSSSCEEEBTT-TCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSCS
T ss_pred CccEE-EcCCccCCCCceEEcCC-CCCcEEeeecCcccccccCCCeEECCCcccccCC
Confidence 34557 8988775 334454444 99999999984321 135689999876543
No 83
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=89.65 E-value=0.35 Score=34.30 Aligned_cols=45 Identities=20% Similarity=0.442 Sum_probs=32.3
Q ss_pred CCcccCccccccccCCCceeecCCCCCcccHhhHHHHHh-----------cCCCCcCCCC
Q 037839 107 STATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLR-----------LHPTCPVCRT 155 (177)
Q Consensus 107 ~~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~-----------~~~~CP~CR~ 155 (177)
..+..|.+|-+. ++.+ .-..|-..||..|+..-+. ....||+|+.
T Consensus 61 g~~d~C~vC~~G---G~Ll-cCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 61 GMDEQCRWCAEG---GNLI-CCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp SCBCSCSSSCCC---SSEE-ECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCeecccCCC---CcEE-eCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 346779999876 4433 3335999999999986541 2458999974
No 84
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=89.37 E-value=0.17 Score=29.12 Aligned_cols=44 Identities=25% Similarity=0.665 Sum_probs=29.0
Q ss_pred cCccccccccCCCceeecCCCCCcccHhhHHHHHhc----CCCCcCCCC
Q 037839 111 CCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRL----HPTCPVCRT 155 (177)
Q Consensus 111 ~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~----~~~CP~CR~ 155 (177)
.|.||...-..++.+.-- .|...||..|+..=+.. ...||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd-~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCD-ECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECT-TTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECC-CCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 488888764333444433 49999999999653322 346999965
No 85
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=89.32 E-value=0.12 Score=34.93 Aligned_cols=46 Identities=22% Similarity=0.503 Sum_probs=30.5
Q ss_pred CcccCccccccccCCCceeecCCCCCcccHhhHHHHHhc----CCCCcCCC
Q 037839 108 TATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRL----HPTCPVCR 154 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~----~~~CP~CR 154 (177)
.+..|.||.+.-...+.+.-- .|+..||..|+...+.. ...||.|+
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~-~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCT-TCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECS-SSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCcCCCCCCCCcCCeECC-CCCCCcChHHhCCccccccccCccCCcCC
Confidence 456799998874333334444 49999999999876532 34566654
No 86
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=89.22 E-value=0.065 Score=33.75 Aligned_cols=49 Identities=29% Similarity=0.457 Sum_probs=32.8
Q ss_pred cccCccccccccCCCceeecCCCCCcccHhhHHHH---------HhcCCCCcCCCCCCCC
Q 037839 109 ATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPW---------LRLHPTCPVCRTSPLP 159 (177)
Q Consensus 109 ~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~W---------l~~~~~CP~CR~~~~~ 159 (177)
...| ||...+..+..|.--. |...||..|+..- ......||.|+..-.+
T Consensus 16 ~~~C-~C~~~~~~~~MI~Cd~-C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~p 73 (76)
T 1wem_A 16 ALYC-ICRQPHNNRFMICCDR-CEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSGP 73 (76)
T ss_dssp CCCS-TTCCCCCSSCEEECSS-SCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSCS
T ss_pred CCEE-ECCCccCCCCEEEeCC-CCCcEeCeEEccchhhhhhccCCCCeEECcCCcCccCc
Confidence 4557 8988765444554444 9999999998421 1246789999865544
No 87
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=88.85 E-value=0.098 Score=32.76 Aligned_cols=49 Identities=24% Similarity=0.449 Sum_probs=32.4
Q ss_pred CcccCccccccccCCCceeecCCCCCcccHhhHHHHHh----cCCCCcCCCCCC
Q 037839 108 TATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLR----LHPTCPVCRTSP 157 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~----~~~~CP~CR~~~ 157 (177)
....|.||.........+..- .|...||..|+..-.. ....||.|+..+
T Consensus 17 ~~~~C~~C~~~~~~~~mi~CD-~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~ 69 (75)
T 2k16_A 17 QIWICPGCNKPDDGSPMIGCD-DCDDWYHWPCVGIMAAPPEEMQWFCPKCANKI 69 (75)
T ss_dssp EEECBTTTTBCCSSCCEEECS-SSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHH
T ss_pred CCcCCCCCCCCCCCCCEEEcC-CCCcccccccCCCCccCCCCCCEEChhccCch
Confidence 445699998775432334333 4899999999965432 245799997654
No 88
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=88.40 E-value=0.12 Score=38.18 Aligned_cols=46 Identities=26% Similarity=0.659 Sum_probs=32.4
Q ss_pred cccCccccccccCCCceeecCCCCCcccHhhHHHHHhc----CCCCcCCCCCCC
Q 037839 109 ATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRL----HPTCPVCRTSPL 158 (177)
Q Consensus 109 ~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~----~~~CP~CR~~~~ 158 (177)
+..|.+|... ++.+ .-..|...||..|+..-+.. ...||.|+..-.
T Consensus 4 ~~~C~~C~~~---g~ll-~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~ 53 (184)
T 3o36_A 4 EDWCAVCQNG---GELL-CCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSK 53 (184)
T ss_dssp CSSCTTTCCC---SSCE-ECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCccccCCCC---Ceee-ecCCCCcccCccccCCCCCCCCCCCEECccccCccc
Confidence 4569999855 4444 33349999999998765543 357999987554
No 89
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=88.32 E-value=0.2 Score=30.18 Aligned_cols=44 Identities=25% Similarity=0.786 Sum_probs=30.4
Q ss_pred CcccCccccccccCCCceeecCCCCCcccHhhHHHHHhc----CCCCcCCCC
Q 037839 108 TATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRL----HPTCPVCRT 155 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~----~~~CP~CR~ 155 (177)
....|.+|... ++.+ .-..|...||..|+..-+.. ...||.|+.
T Consensus 10 ~~~~C~vC~~~---g~ll-~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 10 HQDYCEVCQQG---GEII-LCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCSSCTTTSCC---SSEE-ECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCccCCCC---CcEE-ECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 45579999874 3433 33358899999999874432 347999965
No 90
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=88.13 E-value=0.84 Score=30.75 Aligned_cols=46 Identities=26% Similarity=0.522 Sum_probs=28.2
Q ss_pred cccCcccccccc-----CCCceeecCCCCCcccHhhHHH------HH-hcCCCCcCCC
Q 037839 109 ATCCSICLADYR-----SSDMLRLLPDCSHLFHVKCVDP------WL-RLHPTCPVCR 154 (177)
Q Consensus 109 ~~~C~ICl~~f~-----~~~~v~~l~~C~H~fH~~Ci~~------Wl-~~~~~CP~CR 154 (177)
...|.+|+..-. .++++..-..|+..||..|+.. .+ .....||.|+
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 346999987631 2233333345999999999953 12 2345677764
No 91
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=87.94 E-value=0.079 Score=39.88 Aligned_cols=47 Identities=28% Similarity=0.607 Sum_probs=33.0
Q ss_pred CcccCccccccccCCCceeecCCCCCcccHhhHHHHHhc----CCCCcCCCCCCC
Q 037839 108 TATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRL----HPTCPVCRTSPL 158 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~----~~~CP~CR~~~~ 158 (177)
....|.+|... ++ +..-..|...||..|+...+.. ...||.|+..-.
T Consensus 6 ~~~~C~~C~~~---g~-ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~ 56 (207)
T 3u5n_A 6 NEDWCAVCQNG---GD-LLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGK 56 (207)
T ss_dssp SCSSBTTTCCC---EE-EEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCCCCCCCCC---Cc-eEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCccc
Confidence 45679999754 33 4444459999999999765533 357999987543
No 92
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=87.80 E-value=0.15 Score=30.74 Aligned_cols=46 Identities=24% Similarity=0.648 Sum_probs=31.0
Q ss_pred CcccCccccccccCCCceeecCCCCCcccHhhHHHHHhc----CCCCcCCCCCC
Q 037839 108 TATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRL----HPTCPVCRTSP 157 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~----~~~CP~CR~~~ 157 (177)
....|.+|-+. ++.+.-- .|...||..|+..-+.. ...||.|+...
T Consensus 8 ~~~~C~vC~~~---g~ll~Cd-~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 8 HMEFCRVCKDG---GELLCCD-TCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SCSSCTTTCCC---SSCBCCS-SSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCcCCCCCCC---CCEEEcC-CCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 45569999863 3433333 48899999999753332 34799997654
No 93
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=87.27 E-value=0.95 Score=24.54 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=10.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcc
Q 037839 25 IGVSVGILILITTITLASYFCTR 47 (177)
Q Consensus 25 i~i~l~il~li~~i~l~~~~~~r 47 (177)
.+++++.++.+.++..+.+|+.|
T Consensus 14 AGiVvG~v~gv~li~~l~~~~~r 36 (38)
T 2k1k_A 14 VAVIFGLLLGAALLLGILVFRSR 36 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred eeeehHHHHHHHHHHHHHHHHee
Confidence 35555555444444444344433
No 94
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=86.25 E-value=0.32 Score=28.18 Aligned_cols=44 Identities=18% Similarity=0.289 Sum_probs=27.5
Q ss_pred cCccccccccCCCceeecC-CCCCcccHhhHHHH----HhcCCCCcCCC
Q 037839 111 CCSICLADYRSSDMLRLLP-DCSHLFHVKCVDPW----LRLHPTCPVCR 154 (177)
Q Consensus 111 ~C~ICl~~f~~~~~v~~l~-~C~H~fH~~Ci~~W----l~~~~~CP~CR 154 (177)
.|.+|...+..++.-+.-- .|...||..|+..- ...+..||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 3678888775443322222 38889999997432 13567899985
No 95
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=86.24 E-value=0.2 Score=33.19 Aligned_cols=46 Identities=24% Similarity=0.372 Sum_probs=31.1
Q ss_pred CcccCccccccccCCCceeecCCCCCcccHhhHHHHHh---cCCCCcCCCC
Q 037839 108 TATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLR---LHPTCPVCRT 155 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~---~~~~CP~CR~ 155 (177)
+...| ||-.....+..|.--. |.-.||..|+..=.. ....||.|+.
T Consensus 27 d~vrC-iC~~~~~~~~mi~Cd~-C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 27 DVTRC-ICGFTHDDGYMICCDK-CSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CBCCC-TTSCCSCSSCEEEBTT-TCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CCEEe-ECCCccCCCcEEEcCC-CCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 34567 7877766565555444 999999999864222 2357999974
No 96
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=85.29 E-value=0.81 Score=31.87 Aligned_cols=46 Identities=22% Similarity=0.414 Sum_probs=31.5
Q ss_pred CCcccCccccccccCCCceeecCCCCCcccHhhHHHHH-----------hcCCCCcCCCCC
Q 037839 107 STATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWL-----------RLHPTCPVCRTS 156 (177)
Q Consensus 107 ~~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl-----------~~~~~CP~CR~~ 156 (177)
..+..|.||-+. ++ +..-..|-..||..|+..-+ .....|++|+..
T Consensus 55 g~~~~C~vC~dG---G~-LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 55 GMDEQCRWCAEG---GN-LICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp SCBSSCTTTCCC---SE-EEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCCcCeecCCC---Ce-eEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 345679999876 33 33333588999999998642 124689999653
No 97
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=83.01 E-value=1.1 Score=27.30 Aligned_cols=33 Identities=24% Similarity=0.533 Sum_probs=23.5
Q ss_pred CcccCccccccccCCCceeecC-CCCCcccHhhH
Q 037839 108 TATCCSICLADYRSSDMLRLLP-DCSHLFHVKCV 140 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~~v~~l~-~C~H~fH~~Ci 140 (177)
....|.+|...+..++.-+.-- .|.-.||..|.
T Consensus 7 ~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cv 40 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQDAILCEASCQKWFHRICT 40 (65)
T ss_dssp --CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHH
T ss_pred CcCcCccCCCccCCCCCeEecccCccccCchhcc
Confidence 3456999999987655444433 49999999997
No 98
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=83.01 E-value=1.1 Score=28.52 Aligned_cols=37 Identities=14% Similarity=0.293 Sum_probs=26.0
Q ss_pred CCcccCccccccccCCCceeecCCCCCcccHhhHHHH
Q 037839 107 STATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPW 143 (177)
Q Consensus 107 ~~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~W 143 (177)
.+...|.+|...|..-..--.-..||++||..|....
T Consensus 19 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 19 EDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 3456799999999754322222359999999997553
No 99
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=82.80 E-value=0.26 Score=35.80 Aligned_cols=47 Identities=26% Similarity=0.555 Sum_probs=31.1
Q ss_pred CcccCccccccccCCC-ceeecCCCCCcccHhhHHHHH-----hcCCCCcCCCCC
Q 037839 108 TATCCSICLADYRSSD-MLRLLPDCSHLFHVKCVDPWL-----RLHPTCPVCRTS 156 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~-~v~~l~~C~H~fH~~Ci~~Wl-----~~~~~CP~CR~~ 156 (177)
....| +|......+. .+..- .|...||..|+..-- .....||.|+..
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd-~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCD-RCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECT-TTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECC-CCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 34568 9988765333 34433 499999999984321 235689999763
No 100
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=82.47 E-value=0.39 Score=32.46 Aligned_cols=45 Identities=31% Similarity=0.693 Sum_probs=30.0
Q ss_pred cCccccccccCCCceeecCCCCCcccHhhHHHHHhc----CCCCcCCCC
Q 037839 111 CCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRL----HPTCPVCRT 155 (177)
Q Consensus 111 ~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~----~~~CP~CR~ 155 (177)
.|.||...-.+++.+..-..|...||..|+..-+.. ...||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 588888653333344444459999999999754433 347999974
No 101
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=82.31 E-value=1 Score=28.53 Aligned_cols=36 Identities=25% Similarity=0.542 Sum_probs=25.5
Q ss_pred CCcccCccccccccCCCceeecCCCCCcccHhhHHH
Q 037839 107 STATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDP 142 (177)
Q Consensus 107 ~~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~ 142 (177)
.+...|.+|...|..-..--.-..||++|+..|...
T Consensus 17 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 17 DEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred ccCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 345679999999975432222235999999999754
No 102
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=82.27 E-value=2.1 Score=25.01 Aligned_cols=24 Identities=17% Similarity=0.187 Sum_probs=12.8
Q ss_pred CCCccchhhHHHHHHHHHHHHHHH
Q 037839 18 IGGFGYGIGVSVGILILITTITLA 41 (177)
Q Consensus 18 ~~~~~~~i~i~l~il~li~~i~l~ 41 (177)
++-+.+.++++.|++++.+++++.
T Consensus 7 vp~WiIi~svl~GLLLL~Lii~~L 30 (54)
T 2l8s_A 7 VPLWVILLSAFAGLLLLMLLILAL 30 (54)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHH
Confidence 444555556666666655444433
No 103
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=82.07 E-value=0.33 Score=36.03 Aligned_cols=45 Identities=29% Similarity=0.664 Sum_probs=30.9
Q ss_pred ccCccccccccCCCceeecCCCCCcccHhhHHHHHhc----CCCCcCCCCCCC
Q 037839 110 TCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRL----HPTCPVCRTSPL 158 (177)
Q Consensus 110 ~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~----~~~CP~CR~~~~ 158 (177)
..|.+|... ++.+..- .|...||..|+..=+.. ...||.|+..-.
T Consensus 3 ~~C~~C~~~---g~ll~Cd-~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~~ 51 (189)
T 2ro1_A 3 TICRVCQKP---GDLVMCN-QCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPD 51 (189)
T ss_dssp CCBTTTCCC---SSCCCCT-TTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSCC
T ss_pred CcCccCCCC---CceeECC-CCCchhccccCCCCcccCCCCCCCCcCccCCCC
Confidence 469999865 4444333 48899999999653322 347999987643
No 104
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=81.87 E-value=0.22 Score=30.72 Aligned_cols=46 Identities=20% Similarity=0.513 Sum_probs=29.9
Q ss_pred CcccCccccccccCCCceeecCCCCCcccHhhHHHHH---hcCCCCcCCCC
Q 037839 108 TATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWL---RLHPTCPVCRT 155 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl---~~~~~CP~CR~ 155 (177)
+...| ||-.....+..|.--. |...||..|+..-- .....||.|+.
T Consensus 18 ~~~~C-iC~~~~~~~~MIqCd~-C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 18 GLVTC-FCMKPFAGRPMIECNE-CHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TCCCS-TTCCCCTTCCEEECTT-TCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CceEe-ECCCcCCCCCEEECCC-CCccccccccCcCcccCCCcEECCCCCC
Confidence 45568 9987765333555444 99999999985421 12457888864
No 105
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=81.86 E-value=1.8 Score=25.33 Aligned_cols=24 Identities=25% Similarity=0.242 Sum_probs=12.5
Q ss_pred CCCccchhhHHHHHHHHHHHHHHH
Q 037839 18 IGGFGYGIGVSVGILILITTITLA 41 (177)
Q Consensus 18 ~~~~~~~i~i~l~il~li~~i~l~ 41 (177)
++-+.+.++++.|++++.+++++.
T Consensus 10 vp~wiIi~svl~GLllL~li~~~L 33 (54)
T 2knc_A 10 IPIWWVLVGVLGGLLLLTILVLAM 33 (54)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHH
Confidence 444555556666666555444333
No 106
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.57 E-value=1.3 Score=28.27 Aligned_cols=36 Identities=19% Similarity=0.422 Sum_probs=24.6
Q ss_pred CCcccCccccccccCCCceeecCCCCCcccHhhHHH
Q 037839 107 STATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDP 142 (177)
Q Consensus 107 ~~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~ 142 (177)
.+...|.+|...|..-..--.-..||++||..|...
T Consensus 12 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 12 NNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 345679999999965432122224999999999643
No 107
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=81.30 E-value=0.93 Score=31.26 Aligned_cols=35 Identities=14% Similarity=0.407 Sum_probs=24.7
Q ss_pred CcccCccccccccCCCceeecCCCCCcccHhhHHH
Q 037839 108 TATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDP 142 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~ 142 (177)
+...|.+|...|..-..--.-..||++||..|...
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 34579999999975432222234999999999754
No 108
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.24 E-value=0.14 Score=30.25 Aligned_cols=44 Identities=32% Similarity=0.793 Sum_probs=29.3
Q ss_pred CcccCccccccccCCCceeecCCCCCcccHhhHHHHHhc----CCCCcCCCC
Q 037839 108 TATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRL----HPTCPVCRT 155 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~----~~~CP~CR~ 155 (177)
....|.+|... ++.+.-- .|...||..|+..-+.. ...||.|+.
T Consensus 8 ~~~~C~vC~~~---g~ll~Cd-~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 8 HEDFCSVCRKS---GQLLMCD-TCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SCCSCSSSCCS---SCCEECS-SSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCccCCCC---CeEEEcC-CCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 45569999875 4444433 49999999999753322 336887753
No 109
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=81.17 E-value=1.1 Score=29.11 Aligned_cols=36 Identities=17% Similarity=0.362 Sum_probs=25.5
Q ss_pred CcccCccccccccCCCceeecCCCCCcccHhhHHHH
Q 037839 108 TATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPW 143 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~W 143 (177)
+...|.+|...|..-..-..-..||++||..|...+
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 345799999999754322233359999999997654
No 110
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=81.15 E-value=0.29 Score=30.89 Aligned_cols=49 Identities=24% Similarity=0.442 Sum_probs=31.0
Q ss_pred cccCccccccccCCCceeec-CCCCCcccHhhHHHHH---------hcCCCCcCCCCCCC
Q 037839 109 ATCCSICLADYRSSDMLRLL-PDCSHLFHVKCVDPWL---------RLHPTCPVCRTSPL 158 (177)
Q Consensus 109 ~~~C~ICl~~f~~~~~v~~l-~~C~H~fH~~Ci~~Wl---------~~~~~CP~CR~~~~ 158 (177)
...| ||-.....+..|.-- +.|...||..|+.--- ..+..||.|+..-.
T Consensus 16 ~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~~ 74 (78)
T 1wew_A 16 KVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTSG 74 (78)
T ss_dssp CCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCCS
T ss_pred CEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcccC
Confidence 4457 787765455444433 0399999999985321 13567999976543
No 111
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=80.45 E-value=1.4 Score=23.95 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=9.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhc
Q 037839 24 GIGVSVGILILITTITLASYFCT 46 (177)
Q Consensus 24 ~i~i~l~il~li~~i~l~~~~~~ 46 (177)
.++++.|+.+++.++.+++++++
T Consensus 16 ~~~vv~Gv~ll~~iv~~~~~~~r 38 (41)
T 2k9y_A 16 IGGVAVGVVLLLVLAGVGFFIHR 38 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSS
T ss_pred EeehhHHHHHHHHHHHHheeEee
Confidence 34455555544323333333333
No 112
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=80.21 E-value=1.1 Score=29.04 Aligned_cols=45 Identities=29% Similarity=0.666 Sum_probs=31.4
Q ss_pred CcccCccccccccCCCceeecCCCCCcccHhhHHHHHhc----CCCCcCCCCC
Q 037839 108 TATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRL----HPTCPVCRTS 156 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~----~~~CP~CR~~ 156 (177)
....|.+|... ++.+..- .|.-.||..|+..=+.. ...||.|+..
T Consensus 24 n~~~C~vC~~~---g~LL~CD-~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 24 SATICRVCQKP---GDLVMCN-QCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSCCSSSCSS---SCCEECT-TSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCcCcCcCCC---CCEEECC-CCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 45579999875 4444333 48899999999764433 3479999754
No 113
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=79.60 E-value=1.5 Score=28.27 Aligned_cols=35 Identities=14% Similarity=0.274 Sum_probs=24.9
Q ss_pred CcccCccccccccCCCceeecCCCCCcccHhhHHH
Q 037839 108 TATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDP 142 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~ 142 (177)
+...|.+|...|..-..--.-..||++||..|...
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 34579999999975542222235999999999754
No 114
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=79.03 E-value=3.6 Score=26.15 Aligned_cols=39 Identities=21% Similarity=0.479 Sum_probs=29.9
Q ss_pred CcccCccccccccCCCceeecCCCCCcccHhhHHHHHhc
Q 037839 108 TATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRL 146 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~ 146 (177)
....|.+|.+.+++.--|..-..=+|-||--|-...+++
T Consensus 14 a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 456799999999887666433334799999999988865
No 115
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=79.01 E-value=0.45 Score=30.05 Aligned_cols=45 Identities=29% Similarity=0.691 Sum_probs=29.0
Q ss_pred ccCccccccccCCCceeecCCCCCcccHhhHHHHHhc-----CCCCcCCCC
Q 037839 110 TCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRL-----HPTCPVCRT 155 (177)
Q Consensus 110 ~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~-----~~~CP~CR~ 155 (177)
..|.||...-..+ .+..-..|...||..|+..=+.. ...||.|+.
T Consensus 27 c~C~vC~~~~~~~-~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKHEPN-MQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCCCST-TEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcCCCC-CEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 3688998643333 33333359999999999743322 347888865
No 116
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=78.89 E-value=0.27 Score=29.98 Aligned_cols=45 Identities=24% Similarity=0.646 Sum_probs=30.6
Q ss_pred CcccCccccccccCCCceeecCCCCCcccHhhHHHHHhc----CCCCcCCCCC
Q 037839 108 TATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRL----HPTCPVCRTS 156 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~----~~~CP~CR~~ 156 (177)
....|.||.+. ++.+.-- .|...||..|+..-+.. ...||.|...
T Consensus 7 ~~~~C~vC~~~---g~ll~CD-~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 7 NEDECAVCRDG---GELICCD-GCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CCCSBSSSSCC---SSCEECS-SCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCccCCCC---CCEEEcC-CCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 45579999864 4444333 48999999999753322 3469999653
No 117
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=78.78 E-value=1.6 Score=27.00 Aligned_cols=33 Identities=15% Similarity=0.355 Sum_probs=23.2
Q ss_pred ccCccccccccCCCceeecCCCCCcccHhhHHH
Q 037839 110 TCCSICLADYRSSDMLRLLPDCSHLFHVKCVDP 142 (177)
Q Consensus 110 ~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~ 142 (177)
..|.+|...|..-..--.-..||++|+..|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 479999999975432222224999999999743
No 118
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=78.48 E-value=3.1 Score=23.05 Aligned_cols=24 Identities=25% Similarity=0.247 Sum_probs=12.0
Q ss_pred CCCCccchhhHHHHHHHHHHHHHH
Q 037839 17 NIGGFGYGIGVSVGILILITTITL 40 (177)
Q Consensus 17 ~~~~~~~~i~i~l~il~li~~i~l 40 (177)
.++-+.+.++++.|++++..++++
T Consensus 7 ~vp~wiIi~s~l~GLllL~li~~~ 30 (42)
T 2k1a_A 7 AIPIWWVLVGVLGGLLLLTILVLA 30 (42)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHH
Confidence 344444555566666555444333
No 119
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=78.28 E-value=1.8 Score=29.22 Aligned_cols=44 Identities=23% Similarity=0.514 Sum_probs=27.2
Q ss_pred cCccccccccC------CCceeecCCCCCcccHhhHHHH------Hh-cCCCCcCCC
Q 037839 111 CCSICLADYRS------SDMLRLLPDCSHLFHVKCVDPW------LR-LHPTCPVCR 154 (177)
Q Consensus 111 ~C~ICl~~f~~------~~~v~~l~~C~H~fH~~Ci~~W------l~-~~~~CP~CR 154 (177)
.|.+|+..-.. ++.+..-..|+..||..|+..+ +. ....||.|+
T Consensus 3 ~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 59 (114)
T 2kwj_A 3 YCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK 59 (114)
T ss_dssp CCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGC
T ss_pred cCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccC
Confidence 59999875411 2233333359999999998654 22 245676663
No 120
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=78.14 E-value=0.24 Score=34.18 Aligned_cols=48 Identities=19% Similarity=0.413 Sum_probs=29.2
Q ss_pred CcccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCcCCCC
Q 037839 108 TATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRT 155 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~ 155 (177)
....|..|-..|..-..--.-..||.+||..|.........+|-.|-.
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~ 65 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQR 65 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHH
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHH
Confidence 345799999999754322222359999999997665544556766643
No 121
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=77.57 E-value=1.2 Score=40.95 Aligned_cols=50 Identities=14% Similarity=0.084 Sum_probs=42.2
Q ss_pred CCcccCccccccccCCCceeecCCCC-CcccHhhHHHHHhcCCCCcCCCCCCCCC
Q 037839 107 STATCCSICLADYRSSDMLRLLPDCS-HLFHVKCVDPWLRLHPTCPVCRTSPLPT 160 (177)
Q Consensus 107 ~~~~~C~ICl~~f~~~~~v~~l~~C~-H~fH~~Ci~~Wl~~~~~CP~CR~~~~~~ 160 (177)
.+...|+|=++-+.+| .++| -| +.|-..+|..|+.++.+||.=|.++...
T Consensus 889 P~~F~cPIs~~lM~DP---Vilp-sG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~ 939 (968)
T 3m62_A 889 PDEFLDPLMYTIMKDP---VILP-ASKMNIDRSTIKAHLLSDSTDPFNRMPLKLE 939 (968)
T ss_dssp CGGGBCTTTCSBCSSE---EECT-TTCCEEEHHHHHHHHTTCCBCTTTCCBCCGG
T ss_pred cHHhCCcchhhHHhCC---eEcC-CCCEEECHHHHHHHHhcCCCCCCCCCCCCcc
Confidence 4567799999998877 5677 66 6799999999999999999999988654
No 122
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=77.40 E-value=0.35 Score=31.35 Aligned_cols=55 Identities=22% Similarity=0.403 Sum_probs=34.5
Q ss_pred CcccCccccccc-cCCCceeecCCCCCcccHhhHHHHH--hcCCCCcCCCCCCCCCCC
Q 037839 108 TATCCSICLADY-RSSDMLRLLPDCSHLFHVKCVDPWL--RLHPTCPVCRTSPLPTPL 162 (177)
Q Consensus 108 ~~~~C~ICl~~f-~~~~~v~~l~~C~H~fH~~Ci~~Wl--~~~~~CP~CR~~~~~~~~ 162 (177)
....|.||...- ..++.+..-..|.-.||..|+..-. .....||.|........+
T Consensus 24 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~~~~ 81 (88)
T 2l43_A 24 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRARPAL 81 (88)
T ss_dssp CCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTSCC-
T ss_pred CCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccchhhh
Confidence 456799998763 2223444444588999999997532 124579999765544443
No 123
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=76.49 E-value=0.48 Score=29.29 Aligned_cols=45 Identities=29% Similarity=0.686 Sum_probs=27.7
Q ss_pred cCccccccccCCCceeecCCCCCcccHhhHHHHHhc-----CCCCcCCCCC
Q 037839 111 CCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRL-----HPTCPVCRTS 156 (177)
Q Consensus 111 ~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~-----~~~CP~CR~~ 156 (177)
.|.||...-..+ .+..-..|...||..|+..=+.. ...||.|+..
T Consensus 20 ~C~~C~~~~~~~-~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 20 ACHLCGGRQDPD-KQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp SBTTTCCCSCGG-GEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CCcCCCCcCCCC-CEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 467777542222 33333358899999999843322 4479988753
No 124
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=75.44 E-value=0.35 Score=30.63 Aligned_cols=45 Identities=31% Similarity=0.717 Sum_probs=27.3
Q ss_pred cCccccccccCCCceeecCCCCCcccHhhHHHHHhc----C-CCCcCCCCC
Q 037839 111 CCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRL----H-PTCPVCRTS 156 (177)
Q Consensus 111 ~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~----~-~~CP~CR~~ 156 (177)
.|.||-..-.. +.+..-..|...||..|+..-+.. . ..||.|+.+
T Consensus 28 ~C~vC~~~~d~-~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~d 77 (77)
T 3shb_A 28 ACHLCGGRQDP-DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 77 (77)
T ss_dssp SBTTTCCCSCG-GGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC--
T ss_pred cCCccCCCCCC-cceeEeCCCCCccCcccCCCcccCCCCCCceECcCcccc
Confidence 46677655322 233333358899999999864432 2 579999763
No 125
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=75.21 E-value=1.7 Score=29.04 Aligned_cols=50 Identities=20% Similarity=0.404 Sum_probs=33.2
Q ss_pred ccCccccccccCCCceeecC-CCCCcccHhhHHHH------H----hcCCCCcCCCCCCCC
Q 037839 110 TCCSICLADYRSSDMLRLLP-DCSHLFHVKCVDPW------L----RLHPTCPVCRTSPLP 159 (177)
Q Consensus 110 ~~C~ICl~~f~~~~~v~~l~-~C~H~fH~~Ci~~W------l----~~~~~CP~CR~~~~~ 159 (177)
..|.||...+........-- .|...||..|+..- + .....||.|+..-.+
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~~ 64 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKEG 64 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTTT
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCCC
Confidence 46999999986544333332 48899999997321 1 135689999876543
No 126
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=75.10 E-value=1.6 Score=32.85 Aligned_cols=34 Identities=15% Similarity=0.503 Sum_probs=24.2
Q ss_pred cccCccccccccCCCceeecCCCCCcccHhhHHH
Q 037839 109 ATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDP 142 (177)
Q Consensus 109 ~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~ 142 (177)
...|.+|...|..-..-..-..||++||..|...
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 4689999999975432222235999999999754
No 127
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=75.07 E-value=0.23 Score=30.84 Aligned_cols=48 Identities=19% Similarity=0.294 Sum_probs=30.8
Q ss_pred CcccCccccccccCCC-ceeecCCCCCcccHhhHHHHH----hcCCCCcCCCCCC
Q 037839 108 TATCCSICLADYRSSD-MLRLLPDCSHLFHVKCVDPWL----RLHPTCPVCRTSP 157 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~-~v~~l~~C~H~fH~~Ci~~Wl----~~~~~CP~CR~~~ 157 (177)
....| ||-.....++ .|.-- .|...||..|+..-- .....||.|+..-
T Consensus 15 ~~~~C-~C~~~~~~g~~mI~Cd-~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~ 67 (72)
T 1wee_A 15 WKVDC-KCGTKDDDGERMLACD-GCGVWHHTRCIGINNADALPSKFLCFRCIELS 67 (72)
T ss_dssp SEECC-TTCCCSCCSSCEEECS-SSCEEEETTTTTCCTTSCCCSCCCCHHHHHHC
T ss_pred cceEe-eCCCccCCCCcEEECC-CCCCccCCeeeccCccccCCCcEECCCccCCC
Confidence 34568 6887755443 44444 498999999985421 2345799997644
No 128
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=74.75 E-value=2.2 Score=25.98 Aligned_cols=20 Identities=30% Similarity=0.386 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 037839 27 VSVGILILITTITLASYFCT 46 (177)
Q Consensus 27 i~l~il~li~~i~l~~~~~~ 46 (177)
++-|++.++.++.+.+|++.
T Consensus 13 vlGg~~~lll~~glcI~ccv 32 (70)
T 2klu_A 13 VLGGVAGLLLFIGLGIFFSV 32 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHhh
Confidence 33344444444444444343
No 129
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=74.59 E-value=15 Score=23.78 Aligned_cols=59 Identities=20% Similarity=0.283 Sum_probs=37.5
Q ss_pred CcccCccccccccCCC--ceeec-CCCCCcccHhhHHHHHh-cCCCCcCCCCCCCCCCCCCCc
Q 037839 108 TATCCSICLADYRSSD--MLRLL-PDCSHLFHVKCVDPWLR-LHPTCPVCRTSPLPTPLSTPL 166 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~--~v~~l-~~C~H~fH~~Ci~~Wl~-~~~~CP~CR~~~~~~~~~~~~ 166 (177)
....|.||=++..... ++.+. -.|+--.|..|.+--.+ .++.||.|++.+-...-.+++
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr~kgsp~v 77 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKRLRGSPRV 77 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCCCTTCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccccccCCCCc
Confidence 4467999998864322 12111 12665679999976554 367899999999654444443
No 130
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=73.89 E-value=1.7 Score=26.83 Aligned_cols=45 Identities=31% Similarity=0.675 Sum_probs=27.4
Q ss_pred CcccCccccccccCCCceeecCC--CC-CcccHhhHHHHHhc----CCCCcCCCCCC
Q 037839 108 TATCCSICLADYRSSDMLRLLPD--CS-HLFHVKCVDPWLRL----HPTCPVCRTSP 157 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~~v~~l~~--C~-H~fH~~Ci~~Wl~~----~~~CP~CR~~~ 157 (177)
+...| ||-.... ++.| .--. |. ..||..|+. +.. +..||.|+..-
T Consensus 15 ~~~~C-~C~~~~~-g~MI-~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 15 EPTYC-LCHQVSY-GEMI-GCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp SCCCS-TTCCCSC-SSEE-CCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCEE-ECCCCCC-CCEe-EeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 34568 7977532 3322 2223 55 689999996 322 45799997643
No 131
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=73.89 E-value=2.5 Score=28.34 Aligned_cols=47 Identities=21% Similarity=0.514 Sum_probs=29.7
Q ss_pred CCcccCccccccccCCCceeecC--CCCCcccHhhHHHHHhc----CCCCcCCCCCCCC
Q 037839 107 STATCCSICLADYRSSDMLRLLP--DCSHLFHVKCVDPWLRL----HPTCPVCRTSPLP 159 (177)
Q Consensus 107 ~~~~~C~ICl~~f~~~~~v~~l~--~C~H~fH~~Ci~~Wl~~----~~~CP~CR~~~~~ 159 (177)
..+..|.+|.+. ++ +..-. .|-..||..|+. +.. ...||.|+..+..
T Consensus 13 ~~~~~C~~C~~~---G~-ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~ 65 (107)
T 4gne_A 13 MHEDYCFQCGDG---GE-LVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDECS 65 (107)
T ss_dssp SSCSSCTTTCCC---SE-EEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTTC
T ss_pred CCCCCCCcCCCC---Cc-EeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcCC
Confidence 456679999843 33 33332 388999999997 433 3468877655443
No 132
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=73.37 E-value=0.53 Score=28.00 Aligned_cols=43 Identities=33% Similarity=0.814 Sum_probs=29.1
Q ss_pred cccCccccccccCCCceeecCCCCCcccHhhHHHHHhc----CCCCcCCCC
Q 037839 109 ATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRL----HPTCPVCRT 155 (177)
Q Consensus 109 ~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~----~~~CP~CR~ 155 (177)
+..|.+|... ++.+.-- .|...||..|+..-+.. ...||.|+.
T Consensus 5 ~~~C~vC~~~---g~ll~Cd-~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~ 51 (60)
T 2puy_A 5 EDFCSVCRKS---GQLLMCD-TCSRVYHLDCLDPPLKTIPKGMWICPRCQD 51 (60)
T ss_dssp CSSCTTTCCC---SSCEECS-SSSCEECGGGSSSCCSSCCCSCCCCHHHHH
T ss_pred CCCCcCCCCC---CcEEEcC-CCCcCEECCcCCCCcCCCCCCceEChhccC
Confidence 4569999874 4444433 49999999999753322 346888854
No 133
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=73.13 E-value=1.9 Score=32.71 Aligned_cols=35 Identities=20% Similarity=0.462 Sum_probs=24.9
Q ss_pred cccCccccccccCCCceeecCCCCCcccHhhHHHH
Q 037839 109 ATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPW 143 (177)
Q Consensus 109 ~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~W 143 (177)
...|.+|...|..-..-..-..||++||..|-...
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 45799999999754322233359999999997543
No 134
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=72.83 E-value=2.2 Score=25.59 Aligned_cols=49 Identities=20% Similarity=0.582 Sum_probs=32.2
Q ss_pred CcccCccccccccC-CCceeecCCCCCcccHhhHHHHH-------hcCCCCcCCCCC
Q 037839 108 TATCCSICLADYRS-SDMLRLLPDCSHLFHVKCVDPWL-------RLHPTCPVCRTS 156 (177)
Q Consensus 108 ~~~~C~ICl~~f~~-~~~v~~l~~C~H~fH~~Ci~~Wl-------~~~~~CP~CR~~ 156 (177)
....|.||...... +..+..-..|...||..|+..=+ .....||.|+..
T Consensus 5 ~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 5 SSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 45579999987532 23444444599999999987522 234579888654
No 135
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=72.80 E-value=4.6 Score=24.86 Aligned_cols=50 Identities=20% Similarity=0.397 Sum_probs=32.1
Q ss_pred CCCcccCccccccc-cCCCceeecCCCCCcccHhhHHHHH--hcCCCCcCCCC
Q 037839 106 DSTATCCSICLADY-RSSDMLRLLPDCSHLFHVKCVDPWL--RLHPTCPVCRT 155 (177)
Q Consensus 106 ~~~~~~C~ICl~~f-~~~~~v~~l~~C~H~fH~~Ci~~Wl--~~~~~CP~CR~ 155 (177)
......|.||.+.- ..++.+..-..|.-.||..|+..-. .....||.|+.
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 34566799998763 2334444444699999999996422 12346877753
No 136
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=72.07 E-value=2.8 Score=27.26 Aligned_cols=45 Identities=31% Similarity=0.700 Sum_probs=27.9
Q ss_pred CcccCccccccccCCCceeecCC--CC-CcccHhhHHHHHhc----CCCCcCCCCCC
Q 037839 108 TATCCSICLADYRSSDMLRLLPD--CS-HLFHVKCVDPWLRL----HPTCPVCRTSP 157 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~~v~~l~~--C~-H~fH~~Ci~~Wl~~----~~~CP~CR~~~ 157 (177)
+...| ||..... ++.|. --. |. ..||..|+. +.. +..||.|+..-
T Consensus 35 e~~yC-iC~~~~~-g~MI~-CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 35 EPTYC-LCHQVSY-GEMIG-CDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCBCS-TTCCBCC-SCCCC-CSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CCcEE-ECCCCCC-CCEeE-ecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 34567 9987643 33332 112 55 689999996 322 45799997654
No 137
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=70.47 E-value=2.9 Score=34.25 Aligned_cols=47 Identities=21% Similarity=0.353 Sum_probs=31.1
Q ss_pred ccCccccccccCCCceeecCCCCCc--ccHhhHHHHHh--cCCCCcCCCCCCCC
Q 037839 110 TCCSICLADYRSSDMLRLLPDCSHL--FHVKCVDPWLR--LHPTCPVCRTSPLP 159 (177)
Q Consensus 110 ~~C~ICl~~f~~~~~v~~l~~C~H~--fH~~Ci~~Wl~--~~~~CP~CR~~~~~ 159 (177)
..|++=...+..+ ++-.. |.|+ |-..-+..+.. ....||+|.+.+..
T Consensus 250 L~CPlS~~ri~~P--vRg~~-C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~ 300 (371)
T 3i2d_A 250 LQCPISYTRMKYP--SKSIN-CKHLQCFDALWFLHSQLQIPTWQCPVCQIDIAL 300 (371)
T ss_dssp SBCTTTSSBCSSE--EEETT-CCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCG
T ss_pred ecCCCcccccccc--CcCCc-CCCcceECHHHHHHHhhcCCceeCCCCCcccCH
Confidence 3588888777655 66666 9998 54333333322 24589999988754
No 138
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=70.27 E-value=3.2 Score=24.87 Aligned_cols=42 Identities=17% Similarity=0.302 Sum_probs=28.8
Q ss_pred ccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCCCCC
Q 037839 110 TCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPLPTP 161 (177)
Q Consensus 110 ~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~~~~ 161 (177)
..|+-|-..+...+.+.. . -+..||..|+ .|-.|+.+|....
T Consensus 6 ~~C~~C~~~I~~~~~~~~-a-~~~~~H~~CF--------~C~~C~~~L~~~~ 47 (72)
T 1wyh_A 6 SGCSACGETVMPGSRKLE-Y-GGQTWHEHCF--------LCSGCEQPLGSRS 47 (72)
T ss_dssp CBCSSSCCBCCSSSCEEC-S-TTCCEETTTC--------BCTTTCCBTTTSC
T ss_pred CCCccCCCccccCccEEE-E-CccccCcccC--------eECCCCCcCCCCc
Confidence 458888888776444432 2 5778888886 5888888876543
No 139
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=70.23 E-value=4.9 Score=24.47 Aligned_cols=30 Identities=20% Similarity=0.207 Sum_probs=23.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHhhccCcchh
Q 037839 23 YGIGVSVGILILITTITLASYFCTRGQQQQ 52 (177)
Q Consensus 23 ~~i~i~l~il~li~~i~l~~~~~~r~~~~~ 52 (177)
+.++-++++++++.+.++....+++++++.
T Consensus 12 ivlGg~~~lll~~glcI~ccvkcrhRrrqA 41 (70)
T 2klu_A 12 IVLGGVAGLLLFIGLGIFFSVRSRHRRRQA 41 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCSSSC
T ss_pred HHHhHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 688888889999988888666677666655
No 140
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=69.88 E-value=3 Score=33.98 Aligned_cols=47 Identities=21% Similarity=0.374 Sum_probs=31.8
Q ss_pred cCccccccccCCCceeecCCCCCc--ccHhhHHHHHhc--CCCCcCCCCCCCCC
Q 037839 111 CCSICLADYRSSDMLRLLPDCSHL--FHVKCVDPWLRL--HPTCPVCRTSPLPT 160 (177)
Q Consensus 111 ~C~ICl~~f~~~~~v~~l~~C~H~--fH~~Ci~~Wl~~--~~~CP~CR~~~~~~ 160 (177)
.|+|=...+..+ +|-.. |.|+ |-..-+..+..+ ...||+|.+.+...
T Consensus 217 ~CPlS~~ri~~P--~Rg~~-C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~ 267 (360)
T 4fo9_A 217 MCPLGKMRLTIP--CRAVT-CTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYE 267 (360)
T ss_dssp BCTTTCSBCSSE--EEETT-CCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGG
T ss_pred eCCCccceeccC--CcCCC-CCCCccCCHHHHHHHHhhCCCeECCCCCcccCHH
Confidence 588887777655 66666 9998 554444443332 45899999987653
No 141
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=69.75 E-value=1.8 Score=25.82 Aligned_cols=43 Identities=21% Similarity=0.495 Sum_probs=29.7
Q ss_pred ccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCcCC
Q 037839 110 TCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVC 153 (177)
Q Consensus 110 ~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~C 153 (177)
..|--|...|.... +..-+.|++.|+.+|=.---..-.+||-|
T Consensus 16 ~~C~~C~~~~~~~~-~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQH-VYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSE-EECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCc-cEECCccCcCcccchhHHHHhhccCCcCC
Confidence 35999999985432 34456799999999953322445579987
No 142
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=68.71 E-value=3 Score=24.99 Aligned_cols=41 Identities=15% Similarity=0.300 Sum_probs=28.0
Q ss_pred ccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCCCC
Q 037839 110 TCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPLPT 160 (177)
Q Consensus 110 ~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~~~ 160 (177)
..|+.|-..+...+.+... -+..||.+|+ .|-.|+.+|...
T Consensus 6 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~~ 46 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKMEY--KGSSWHETCF--------ICHRCQQPIGTK 46 (72)
T ss_dssp CCBSSSCCCCCSSSCEEEE--TTEEEETTTT--------CCSSSCCCCCSS
T ss_pred CCCccCCCcccCCceEEEE--CcCeecccCC--------cccccCCccCCC
Confidence 3588888887765444332 4678888876 588888877554
No 143
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=68.32 E-value=3.9 Score=24.92 Aligned_cols=32 Identities=28% Similarity=0.593 Sum_probs=25.5
Q ss_pred CcccCccccccccCCCceeecCCC-CCcccHhhHHHHH
Q 037839 108 TATCCSICLADYRSSDMLRLLPDC-SHLFHVKCVDPWL 144 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~~v~~l~~C-~H~fH~~Ci~~Wl 144 (177)
...-|.||.++ ..++.+. | |-+||..|....-
T Consensus 7 e~pWC~ICneD----AtlrC~g-CdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 7 GLPWCCICNED----ATLRCAG-CDGDLYCARCFREGH 39 (67)
T ss_dssp CCSSCTTTCSC----CCEEETT-TTSEEECSSHHHHHT
T ss_pred CCCeeEEeCCC----CeEEecC-CCCceehHHHHHHHc
Confidence 44569999988 4577887 9 8999999998753
No 144
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=68.13 E-value=4.4 Score=24.28 Aligned_cols=42 Identities=17% Similarity=0.324 Sum_probs=28.8
Q ss_pred ccCccccccccC--CCceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCCCCC
Q 037839 110 TCCSICLADYRS--SDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPLPTP 161 (177)
Q Consensus 110 ~~C~ICl~~f~~--~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~~~~ 161 (177)
..|+-|-..+.. .+.+. .. -+..||.+|+ .|-.|+.+|....
T Consensus 6 ~~C~~C~~~I~~~~~~~~~-~a-~~~~wH~~CF--------~C~~C~~~L~~~~ 49 (72)
T 1x4l_A 6 SGCAGCTNPISGLGGTKYI-SF-EERQWHNDCF--------NCKKCSLSLVGRG 49 (72)
T ss_dssp CSBTTTTBCCCCSSSCSCE-EC-SSCEECTTTC--------BCSSSCCBCTTSC
T ss_pred CCCcCCCccccCCCCcceE-EE-CCcccCcccC--------EeccCCCcCCCCc
Confidence 458888888775 33332 22 5788998886 5888988886443
No 145
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=66.93 E-value=0.5 Score=30.87 Aligned_cols=48 Identities=23% Similarity=0.549 Sum_probs=31.3
Q ss_pred CcccCccccccccCCCceeecCCCCCcccHhhHHHHHhc----CCCCcCCCCC
Q 037839 108 TATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRL----HPTCPVCRTS 156 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~----~~~CP~CR~~ 156 (177)
+...|.||...-.....+ .-..|...||..|+..=+.. ...||.|+..
T Consensus 15 ~~~~C~vC~~~~~~~~ll-~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 15 DSYICQVCSRGDEDDKLL-FCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCSSSCCSGGGGGCE-ECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred CCCCCccCCCcCCCCCEE-EcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 345699998774333333 33359999999999743322 3479999753
No 146
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=66.87 E-value=1.9 Score=22.88 Aligned_cols=22 Identities=18% Similarity=0.474 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHhhccC
Q 037839 27 VSVGILILITTITLASYFCTRG 48 (177)
Q Consensus 27 i~l~il~li~~i~l~~~~~~r~ 48 (177)
.++|+++++++...+..|.+|+
T Consensus 13 gVvglll~vii~l~~~~~iRRr 34 (35)
T 1iij_A 13 TVVGVLLFLILVVVVGILIKRR 34 (35)
T ss_dssp HHHHHHHHHHHTTTTTHHHHHC
T ss_pred HHHHHHHHHHHHHHhheEEeec
Confidence 3344333333333334445544
No 147
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=66.74 E-value=1.9 Score=32.92 Aligned_cols=46 Identities=30% Similarity=0.730 Sum_probs=26.0
Q ss_pred ccCccccccccCCCceeecCCCCCcccHhhHHHHHhc-----CCCCcCCCCC
Q 037839 110 TCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRL-----HPTCPVCRTS 156 (177)
Q Consensus 110 ~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~-----~~~CP~CR~~ 156 (177)
..|.+|-..-..++.+ .-..|...||..|+..=+.. ...||.|+.+
T Consensus 175 c~C~vC~~~~~~~~lL-~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 175 CACHLCGGRQDPDKQL-MCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp TSCSSSCCCCC--CCE-ECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCCcCCCCCCCCCCeE-EcCCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 3588887643333333 33359999999999853322 3479999753
No 148
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=66.36 E-value=5.7 Score=24.42 Aligned_cols=41 Identities=20% Similarity=0.395 Sum_probs=30.4
Q ss_pred ccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCCCC
Q 037839 110 TCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPLPT 160 (177)
Q Consensus 110 ~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~~~ 160 (177)
..|+.|-..+..++.+... -+..||.+|+ .|-.|+.+|...
T Consensus 16 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~~ 56 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQNVEY--KGTVWHKDCF--------TCSNCKQVIGTG 56 (82)
T ss_dssp CBCSSSCCBCCSSSCEEEC--SSCEEETTTC--------CCSSSCCCCTTS
T ss_pred CcCccCCcccccCceEEEE--CccccccccC--------chhhCCCccCCC
Confidence 4699999988766654332 5788998887 688898888654
No 149
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=65.68 E-value=3.7 Score=24.96 Aligned_cols=42 Identities=19% Similarity=0.405 Sum_probs=30.8
Q ss_pred cccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCCCCC
Q 037839 109 ATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPLPTP 161 (177)
Q Consensus 109 ~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~~~~ 161 (177)
...|+-|-+.+..++.+.. -+..||.+|+ .|..|+.+|....
T Consensus 9 ~~~C~~C~~~I~~~~~v~a---~~~~~H~~CF--------~C~~C~~~L~~~~ 50 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVSS---LGKDWHKFCL--------KCERCSKTLTPGG 50 (76)
T ss_dssp CCBCTTTCCBCCTTTEEEE---TTEEEETTTC--------BCSSSCCBCCTTS
T ss_pred CCCCcCCCCEeECCeEEEE---CCeEeeCCCC--------CCCCCCCccCCCc
Confidence 3469999998876655432 5778998886 5889988887543
No 150
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=65.43 E-value=5.1 Score=23.94 Aligned_cols=38 Identities=26% Similarity=0.551 Sum_probs=20.9
Q ss_pred cCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCC
Q 037839 111 CCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPL 158 (177)
Q Consensus 111 ~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~ 158 (177)
.|+-|-..+...+.+.. . -+..||.+|+ .|-.|+.+|.
T Consensus 7 ~C~~C~~~I~~~~~~~~-a-~~~~~H~~CF--------~C~~C~~~L~ 44 (72)
T 1x61_A 7 GCGGCGEDVVGDGAGVV-A-LDRVFHVGCF--------VCSTCRAQLR 44 (72)
T ss_dssp CCSSSCSCCCSSSCCEE-C-SSSEECTTTC--------BCSSSCCBCT
T ss_pred CCccCCCccCCCceEEE-E-CCCeEcccCC--------cccccCCcCC
Confidence 46667666554332222 1 3566776665 4666766664
No 151
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=65.20 E-value=4.4 Score=28.21 Aligned_cols=35 Identities=17% Similarity=0.309 Sum_probs=24.3
Q ss_pred CCcccCcccccccc-CCCceeecCCCCCcccHhhHH
Q 037839 107 STATCCSICLADYR-SSDMLRLLPDCSHLFHVKCVD 141 (177)
Q Consensus 107 ~~~~~C~ICl~~f~-~~~~v~~l~~C~H~fH~~Ci~ 141 (177)
.....|++|...|. ....-..-.+|.|.+|..|-.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 45678999999994 222223334599999998864
No 152
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=64.79 E-value=1.3 Score=29.68 Aligned_cols=28 Identities=21% Similarity=0.736 Sum_probs=18.5
Q ss_pred CCCCcccHhhHHHHHhcCCCCcCCCCCCCCCCC
Q 037839 130 DCSHLFHVKCVDPWLRLHPTCPVCRTSPLPTPL 162 (177)
Q Consensus 130 ~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~~~~~ 162 (177)
+||+.|. +. +.....||.|++.-...+.
T Consensus 72 ~CG~~F~----~~-~~kPsrCP~CkSe~Ie~P~ 99 (105)
T 2gmg_A 72 KCGFVFK----AE-INIPSRCPKCKSEWIEEPR 99 (105)
T ss_dssp TTCCBCC----CC-SSCCSSCSSSCCCCBCCCC
T ss_pred hCcCeec----cc-CCCCCCCcCCCCCccCCcc
Confidence 4999991 11 2345679999987665554
No 153
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=64.71 E-value=4.7 Score=26.05 Aligned_cols=22 Identities=23% Similarity=0.495 Sum_probs=11.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHhh
Q 037839 24 GIGVSVGILILITTITLASYFC 45 (177)
Q Consensus 24 ~i~i~l~il~li~~i~l~~~~~ 45 (177)
.+.++++++++++++++++++|
T Consensus 69 K~~iii~~iv~~il~ii~~~~~ 90 (91)
T 3hd7_A 69 KMMIILGVICAIILIIIIVYFS 90 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555555555555554
No 154
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=63.95 E-value=1.4 Score=36.22 Aligned_cols=50 Identities=16% Similarity=0.289 Sum_probs=0.0
Q ss_pred CcccCccccccccCCCceeecCCCCCcccHhhHHHHHhc-------CCCCcCCCCCC
Q 037839 108 TATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRL-------HPTCPVCRTSP 157 (177)
Q Consensus 108 ~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~-------~~~CP~CR~~~ 157 (177)
....|.+|-..|..-..-.....||++||..|-..++.- .++|-.|-..+
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp ---------------------------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 456799999998644221122249999999998766411 23566664433
No 155
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=62.39 E-value=5.4 Score=24.71 Aligned_cols=39 Identities=21% Similarity=0.539 Sum_probs=29.1
Q ss_pred cccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCC
Q 037839 109 ATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPL 158 (177)
Q Consensus 109 ~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~ 158 (177)
...|+-|-..+..++.+.. -+..||.+|+ .|-.|+.+|.
T Consensus 15 ~~~C~~C~~~I~~~~~v~a---~~~~wH~~CF--------~C~~C~~~L~ 53 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQSLLA---LDKQWHVSCF--------KCQTCSVILT 53 (80)
T ss_dssp CSCCTTTCCCCSSSCCEEE---TTEEECTTTC--------BCSSSCCBCS
T ss_pred CCCCcCcCCeeCCCeEEEE---CCcccccccC--------CcCcCCCCcC
Confidence 4469999988876665543 4678998886 5888988875
No 156
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=62.36 E-value=5.7 Score=24.05 Aligned_cols=43 Identities=16% Similarity=0.447 Sum_probs=29.7
Q ss_pred cccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCCCCC
Q 037839 109 ATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPLPTP 161 (177)
Q Consensus 109 ~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~~~~ 161 (177)
...|+-|-..+...+.+... -|..||..|+ .|-.|+.++....
T Consensus 11 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~~~ 53 (77)
T 1g47_A 11 SATCERCKGGFAPAEKIVNS--NGELYHEQCF--------VCAQCFQQFPEGL 53 (77)
T ss_dssp CCBCSSSCCBCCSTTTCEEE--TTEEECTTTC--------CCTTTCCCCGGGC
T ss_pred CCCchhcCCccCCCceEEEe--CccEeccccC--------eECCCCCCCCCCC
Confidence 45699998888755544322 4778898886 5888888776543
No 157
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=61.87 E-value=6.5 Score=26.76 Aligned_cols=23 Identities=22% Similarity=0.473 Sum_probs=11.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHhh
Q 037839 23 YGIGVSVGILILITTITLASYFC 45 (177)
Q Consensus 23 ~~i~i~l~il~li~~i~l~~~~~ 45 (177)
|.+.++++++++++++++++++|
T Consensus 96 ~K~~iii~~iv~iii~iIi~~~c 118 (119)
T 2kog_A 96 LKMMIILGVICAIILIIIIVYFS 118 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhee
Confidence 44444555555555555555544
No 158
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=61.65 E-value=0.9 Score=26.17 Aligned_cols=41 Identities=20% Similarity=0.505 Sum_probs=25.0
Q ss_pred cccccccCCCceeecCCCCCcccHhhHHHHH---hcCCCCcCCCC
Q 037839 114 ICLADYRSSDMLRLLPDCSHLFHVKCVDPWL---RLHPTCPVCRT 155 (177)
Q Consensus 114 ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl---~~~~~CP~CR~ 155 (177)
||-.....+..|.--. |+..||..|+..-- .....||.|+.
T Consensus 8 ~C~~~~~~~~MI~Cd~-C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFAGRPMIECNE-CHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCTTCCEEECTT-TCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCCCCCEEEcCC-CCccccccccCCCcccCCCcEECcCCCC
Confidence 5655544334444443 88999999985321 23457888864
No 159
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=61.24 E-value=11 Score=19.59 Aligned_cols=23 Identities=48% Similarity=0.728 Sum_probs=15.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcc
Q 037839 25 IGVSVGILILITTITLASYFCTR 47 (177)
Q Consensus 25 i~i~l~il~li~~i~l~~~~~~r 47 (177)
.+++++-++.+.++.+.+|++.|
T Consensus 10 aGIVvgdi~~t~~i~~~vy~~~r 32 (33)
T 2l34_A 10 AGIVVGDLVLTVLIALAVYFLGR 32 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCC
T ss_pred EeEeHHHHHHHHHHHHHHhheec
Confidence 36677777777777777776654
No 160
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=60.58 E-value=7.2 Score=24.18 Aligned_cols=42 Identities=24% Similarity=0.583 Sum_probs=30.3
Q ss_pred cccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCCCCC
Q 037839 109 ATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPLPTP 161 (177)
Q Consensus 109 ~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~~~~ 161 (177)
...|+-|-..+...+.+. . -+..||.+|+ .|-.|+.+|....
T Consensus 15 ~~~C~~C~~~I~~~e~v~--a-~~~~wH~~CF--------~C~~C~~~L~~~~ 56 (82)
T 2co8_A 15 GDLCALCGEHLYVLERLC--V-NGHFFHRSCF--------RCHTCEATLWPGG 56 (82)
T ss_dssp SCBCSSSCCBCCTTTBCC--B-TTBCCBTTTC--------BCSSSCCBCCTTS
T ss_pred CCCCcccCCCcccceEEE--E-CCCeeCCCcC--------EEcCCCCCcCCCc
Confidence 456999998876555543 2 5778999986 5888888776544
No 161
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=60.25 E-value=3.1 Score=25.38 Aligned_cols=45 Identities=11% Similarity=0.093 Sum_probs=25.6
Q ss_pred CCcccCccccccccCCCceeecCCCCCcccH-hhHHHHHhcCCCCcCCCCC
Q 037839 107 STATCCSICLADYRSSDMLRLLPDCSHLFHV-KCVDPWLRLHPTCPVCRTS 156 (177)
Q Consensus 107 ~~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~-~Ci~~Wl~~~~~CP~CR~~ 156 (177)
..-..|..|-..+..+.- .. . =|.+||. .|...-+ ...|--|...
T Consensus 25 ~~CF~C~~C~~~L~~~~~-~~-~-~g~~yC~~~cy~~~f--~~~C~~C~~~ 70 (76)
T 1iml_A 25 RPCLKCEKCGKTLTSGGH-AE-H-EGKPYCNHPCYSAMF--GPKGFGRGGA 70 (76)
T ss_dssp TTTCBCTTTCCBCCTTTE-EE-E-TTEEEETTTHHHHHS--SCCCSSCCCS
T ss_pred CCCCCccccCccCCCCce-EC-c-CCeEeeCHHHHHHHh--CccCCCcCCc
Confidence 345667788777665432 22 2 4677777 5775532 3457666543
No 162
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=59.63 E-value=11 Score=27.03 Aligned_cols=44 Identities=25% Similarity=0.585 Sum_probs=31.3
Q ss_pred CCcccCccccccccCCCceeecC--CCCCcccHhhHHHHHhc----------CCCCcCCC
Q 037839 107 STATCCSICLADYRSSDMLRLLP--DCSHLFHVKCVDPWLRL----------HPTCPVCR 154 (177)
Q Consensus 107 ~~~~~C~ICl~~f~~~~~v~~l~--~C~H~fH~~Ci~~Wl~~----------~~~CP~CR 154 (177)
..+..|.||-+. ..+..-. .|...||..||+.++-. ..+|=+|.
T Consensus 77 G~~~yC~wC~~G----g~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~ 132 (159)
T 3a1b_A 77 GYQSYCTICCGG----REVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCG 132 (159)
T ss_dssp SSBSSCTTTSCC----SEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTC
T ss_pred CCcceeeEecCC----CeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecC
Confidence 346679999865 3444433 48899999999998733 34788885
No 163
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=58.71 E-value=5.4 Score=24.22 Aligned_cols=41 Identities=17% Similarity=0.438 Sum_probs=27.7
Q ss_pred ccCccccccccC--CCceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCCCC
Q 037839 110 TCCSICLADYRS--SDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPLPT 160 (177)
Q Consensus 110 ~~C~ICl~~f~~--~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~~~ 160 (177)
..|+-|-..+.. ...+... -+..||.+|+ .|-.|+.+|...
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~a--~~~~wH~~CF--------~C~~C~~~L~~~ 48 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFICF--QDSQWHSECF--------NCGKCSVSLVGK 48 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEEE--TTEEEEGGGC--------BCTTTCCBCSSS
T ss_pred CCCccCCCcccCCCCceeEEE--CCcccCcccC--------ChhhCCCcCCCC
Confidence 358888888774 3333222 5778998886 588888877543
No 164
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=58.41 E-value=9.9 Score=31.24 Aligned_cols=45 Identities=27% Similarity=0.630 Sum_probs=31.9
Q ss_pred CCcccCccccccccCCCceeecC--CCCCcccHhhHHHHHh----------cCCCCcCCCC
Q 037839 107 STATCCSICLADYRSSDMLRLLP--DCSHLFHVKCVDPWLR----------LHPTCPVCRT 155 (177)
Q Consensus 107 ~~~~~C~ICl~~f~~~~~v~~l~--~C~H~fH~~Ci~~Wl~----------~~~~CP~CR~ 155 (177)
..+..|.+|-+. + .+..-. .|...||..||+.++- ...+|=+|.-
T Consensus 91 G~~~yCr~C~~G---g-~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 91 GYQSYCSICCSG---E-TLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLP 147 (386)
T ss_dssp SSBCSCTTTCCC---S-SCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred CCcccceEcCCC---C-eEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence 346679999865 3 333333 5999999999999872 2458988853
No 165
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=55.03 E-value=8.5 Score=23.24 Aligned_cols=42 Identities=14% Similarity=0.319 Sum_probs=29.8
Q ss_pred ccCccccccccC---CCceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCCCCC
Q 037839 110 TCCSICLADYRS---SDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPLPTP 161 (177)
Q Consensus 110 ~~C~ICl~~f~~---~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~~~~ 161 (177)
..|+-|-..+.. ...+... =+..||..|+ .|-.|+.+|....
T Consensus 16 ~~C~~C~~~I~~~g~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~~~ 60 (77)
T 2egq_A 16 KKCAGCKNPITGFGKGSSVVAY--EGQSWHDYCF--------HCKKCSVNLANKR 60 (77)
T ss_dssp CCCSSSCCCCCCCSSCCCEEEE--TTEEEETTTC--------BCSSSCCBCTTSC
T ss_pred ccCcccCCcccCCCCCceeEEE--CcceeCcccC--------EehhcCCCCCCCc
Confidence 469999888875 3333222 4778998886 5999999886543
No 166
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=54.95 E-value=6.4 Score=23.28 Aligned_cols=42 Identities=17% Similarity=0.476 Sum_probs=30.8
Q ss_pred cccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCCCC
Q 037839 109 ATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPLPT 160 (177)
Q Consensus 109 ~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~~~ 160 (177)
...|+-|-..+...+.+... -+..||..|+ .|-.|..++...
T Consensus 11 ~~~C~~C~~~i~~~e~~~~~--~~~~~H~~CF--------~C~~C~~~L~~~ 52 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIVNS--NGELYHEQCF--------VCAQCFQQFPEG 52 (72)
T ss_dssp TCBCTTTCCBCCTTCEEEEE--TTEEEETTTS--------SCTTTCCCCGGG
T ss_pred CccchhcCccccCCceEEEe--CcCeeCcCCC--------cccCCCCCCCCC
Confidence 34699999988866654332 5778998887 588898887654
No 167
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=54.79 E-value=12 Score=22.06 Aligned_cols=39 Identities=18% Similarity=0.435 Sum_probs=25.7
Q ss_pred ccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCCCC
Q 037839 110 TCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPLPT 160 (177)
Q Consensus 110 ~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~~~ 160 (177)
..|+-|-..+.. +. +.. -+..||.+|+ .|-.|+.+|...
T Consensus 6 ~~C~~C~~~I~~-~~--~~a-~~~~~H~~CF--------~C~~C~~~L~~~ 44 (70)
T 2d8z_A 6 SGCVQCKKPITT-GG--VTY-REQPWHKECF--------VCTACRKQLSGQ 44 (70)
T ss_dssp CBCSSSCCBCCS-SE--EES-SSSEEETTTS--------BCSSSCCBCTTS
T ss_pred CCCcccCCeecc-ce--EEE-CccccCCCCC--------ccCCCCCcCCcC
Confidence 358888877763 22 222 5678888876 588888877543
No 168
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=54.54 E-value=6.1 Score=26.57 Aligned_cols=49 Identities=12% Similarity=0.243 Sum_probs=31.5
Q ss_pred CCCCcccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCC
Q 037839 105 KDSTATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSP 157 (177)
Q Consensus 105 ~~~~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~ 157 (177)
....-..|..|-..+..++..... =+.+||..|....+.. .|..|....
T Consensus 32 ~H~~CF~C~~C~~~L~~g~~f~~~--~g~~yC~~cy~~~~~~--~~~~~~~~~ 80 (123)
T 2l3k_A 32 YHLECFKCAACQKHFSVGDRYLLI--NSDIVCEQDIYEWTKI--NGGSGGSGG 80 (123)
T ss_dssp CCTTTCBCTTTCCBCCTTCEEEEC--SSSEEEGGGHHHHHHH--HTCCCCCCS
T ss_pred cccccCccccCCCCCCCCCcEEee--CCEEEcHHHhHHHhcc--ccCCCCCCC
Confidence 345567788888888655544333 4788899998887642 355554443
No 169
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=54.36 E-value=13 Score=23.33 Aligned_cols=41 Identities=22% Similarity=0.542 Sum_probs=26.2
Q ss_pred ccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCCCCC
Q 037839 110 TCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPLPTP 161 (177)
Q Consensus 110 ~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~~~~ 161 (177)
..|+-|-..+...+.+ .. -+..||.+|+ .|-.|..+|....
T Consensus 16 ~~C~~C~~~I~~~~~v--~a-~~~~~H~~CF--------~C~~C~~~L~~~~ 56 (91)
T 2d8y_A 16 ETCVECQKTVYPMERL--LA-NQQVFHISCF--------RCSYCNNKLSLGT 56 (91)
T ss_dssp CBCTTTCCBCCTTSEE--EC-SSSEEETTTC--------BCTTTCCBCCTTT
T ss_pred CcCccCCCccCCceeE--EE-CCCEECCCCC--------eeCCCCCCCCCCC
Confidence 4588887777654443 22 5677887775 4777777765543
No 170
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=53.20 E-value=12 Score=23.83 Aligned_cols=48 Identities=19% Similarity=0.378 Sum_probs=30.1
Q ss_pred CCcccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCCC
Q 037839 107 STATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPLP 159 (177)
Q Consensus 107 ~~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~~ 159 (177)
..-..|..|-..+....- ... =|.+||..|... .-...|..|..++.+
T Consensus 31 ~~CF~C~~C~~~L~~~~~-~~~--~g~~yC~~cy~~--~~~~~C~~C~~~I~~ 78 (101)
T 2cup_A 31 DTCFRCAKCLHPLANETF-VAK--DNKILCNKCTTR--EDSPKCKGCFKAIVA 78 (101)
T ss_dssp TTTCCCSSSCCCTTSSCC-EEE--TTEEECHHHHTT--CCCCBCSSSCCBCCS
T ss_pred hcCCcccccCCCCCcCee-ECc--CCEEEChhHhhh--hcCCccccCCCcccc
Confidence 345668888877753322 222 467788887744 224578889888864
No 171
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=51.40 E-value=8.6 Score=22.48 Aligned_cols=40 Identities=18% Similarity=0.418 Sum_probs=28.2
Q ss_pred ccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCCCCC
Q 037839 110 TCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPLPTP 161 (177)
Q Consensus 110 ~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~~~~ 161 (177)
..|+-|-..+. ++. +.. -+..||.+|+ .|-.|+.+|....
T Consensus 6 ~~C~~C~~~I~-~~~--~~a-~~~~~H~~CF--------~C~~C~~~L~~~~ 45 (66)
T 1nyp_A 6 PICGACRRPIE-GRV--VNA-MGKQWHVEHF--------VCAKCEKPFLGHR 45 (66)
T ss_dssp CEETTTTEECC-SCE--ECC-TTSBEETTTC--------BCTTTCCBCSSSC
T ss_pred CCCcccCCEec-ceE--EEE-CccccccCcC--------EECCCCCCCCCCc
Confidence 45888888877 332 333 5788998886 5888988886543
No 172
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=51.38 E-value=4.6 Score=24.85 Aligned_cols=41 Identities=24% Similarity=0.459 Sum_probs=27.1
Q ss_pred ccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCCCCC
Q 037839 110 TCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPLPTP 161 (177)
Q Consensus 110 ~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~~~~ 161 (177)
..|+.|-+.+..++.+.. -+..||.+|+ .|-.|+.+|...+
T Consensus 8 ~~C~~C~~~I~~~~~~~a---~~~~~H~~CF--------~C~~C~~~L~~~~ 48 (81)
T 1a7i_A 8 NKCGACGRTVYHAEEVQC---DGRSFHRCCF--------LCMVCRKNLDSTT 48 (81)
T ss_dssp CBCSSSCCBCSSTTEEEE---TTEEEESSSE--------ECSSSCCEECSSC
T ss_pred CcCcCcCccccCceeEEe---CCcccccccC--------ccCCCCCCCCCCC
Confidence 458888887765554332 4677887776 4777877775543
No 173
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.30 E-value=9 Score=23.50 Aligned_cols=42 Identities=21% Similarity=0.392 Sum_probs=28.7
Q ss_pred ccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCCCCC
Q 037839 110 TCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPLPTP 161 (177)
Q Consensus 110 ~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~~~~ 161 (177)
..|+-|-..+...+.+.. . -+..||..|+ .|-.|+.+|....
T Consensus 16 ~~C~~C~~~I~~~~~~~~-a-~~~~~H~~CF--------~C~~C~~~L~~~~ 57 (82)
T 2ehe_A 16 NTCAECQQLIGHDSRELF-Y-EDRHFHEGCF--------RCCRCQRSLADEP 57 (82)
T ss_dssp CBCTTTCCBCCSSCCBCC-C-SSCCCBTTTS--------BCTTTCCBCSSCC
T ss_pred CcCccCCCccccCcEEEE-e-CCccccccCC--------eecCCCCccCCCc
Confidence 369999888774333322 2 4788998886 5888888876443
No 174
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=50.31 E-value=8.7 Score=24.52 Aligned_cols=49 Identities=22% Similarity=0.513 Sum_probs=33.1
Q ss_pred cccCccccccccC-CCceeecCCCCCcccHhhHHHHHh--------cCCCCcCCCCCC
Q 037839 109 ATCCSICLADYRS-SDMLRLLPDCSHLFHVKCVDPWLR--------LHPTCPVCRTSP 157 (177)
Q Consensus 109 ~~~C~ICl~~f~~-~~~v~~l~~C~H~fH~~Ci~~Wl~--------~~~~CP~CR~~~ 157 (177)
...|.||...-.. ++.+..--.|...||..|+..-+. ....||.|+...
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~ 73 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQM 73 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHH
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchh
Confidence 3469999976432 234444446999999999975432 245799997644
No 175
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=49.56 E-value=17 Score=22.70 Aligned_cols=41 Identities=15% Similarity=0.343 Sum_probs=29.5
Q ss_pred cccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCCCCC
Q 037839 109 ATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPLPTP 161 (177)
Q Consensus 109 ~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~~~~ 161 (177)
...|+-|-+.+.. ..+ .. -+..||.+|+ .|-.|+..|....
T Consensus 25 ~~~C~~C~~~I~~-~~~--~a-~~~~~H~~CF--------~C~~C~~~L~~~~ 65 (89)
T 1x64_A 25 MPLCDKCGSGIVG-AVV--KA-RDKYRHPECF--------VCADCNLNLKQKG 65 (89)
T ss_dssp CCBCTTTCCBCCS-CCE--ES-SSCEECTTTC--------CCSSSCCCTTTSC
T ss_pred CCCcccCCCEecc-cEE--EE-CCceECccCC--------EecCCCCCCCCCC
Confidence 4569999888774 322 22 6788999886 5889988886544
No 176
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=49.30 E-value=2.2 Score=25.30 Aligned_cols=42 Identities=33% Similarity=0.719 Sum_probs=25.0
Q ss_pred cccCccccccccCCCceeecCC--CC-CcccHhhHHHHHhc----CCCCcCCCC
Q 037839 109 ATCCSICLADYRSSDMLRLLPD--CS-HLFHVKCVDPWLRL----HPTCPVCRT 155 (177)
Q Consensus 109 ~~~C~ICl~~f~~~~~v~~l~~--C~-H~fH~~Ci~~Wl~~----~~~CP~CR~ 155 (177)
...| ||..... ++.+ .--. |. ..||..|+. +.. +..||.|++
T Consensus 10 ~~~C-~C~~~~~-g~mi-~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 10 PTYC-LCHQVSY-GEMI-GCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CEET-TTTEECC-SEEE-ECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCEE-ECCCcCC-CCEE-EeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 4457 8977532 3322 2223 44 689999997 332 347888854
No 177
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=49.25 E-value=2.4 Score=25.39 Aligned_cols=44 Identities=30% Similarity=0.628 Sum_probs=25.5
Q ss_pred cccCccccccccCCCceeecCC--CC-CcccHhhHHHHH--hcCCCCcCCCC
Q 037839 109 ATCCSICLADYRSSDMLRLLPD--CS-HLFHVKCVDPWL--RLHPTCPVCRT 155 (177)
Q Consensus 109 ~~~C~ICl~~f~~~~~v~~l~~--C~-H~fH~~Ci~~Wl--~~~~~CP~CR~ 155 (177)
...| ||-... .++.+ .--. |. ..||..|+..-- ..+..||.|+.
T Consensus 11 ~~yC-~C~~~~-~g~MI-~CD~c~C~~~WfH~~Cvgl~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 11 PTYC-LCNQVS-YGEMI-GCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CEET-TTTEEC-CSEEE-ECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHT
T ss_pred CcEE-ECCCCC-CCCee-eeeCCCCCcccEecccCCcCcCCCCCEECcCccc
Confidence 4557 897753 23332 2223 44 789999996210 12457998864
No 178
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=48.08 E-value=13 Score=23.38 Aligned_cols=8 Identities=38% Similarity=0.435 Sum_probs=3.1
Q ss_pred hHHHHHHH
Q 037839 26 GVSVGILI 33 (177)
Q Consensus 26 ~i~l~il~ 33 (177)
+++.|+++
T Consensus 16 gvi~gill 23 (79)
T 2knc_B 16 SVMGAILL 23 (79)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34444333
No 179
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.77 E-value=10 Score=23.85 Aligned_cols=41 Identities=17% Similarity=0.361 Sum_probs=28.0
Q ss_pred cccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCCCCC
Q 037839 109 ATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPLPTP 161 (177)
Q Consensus 109 ~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~~~~ 161 (177)
...|+-|-..+. ++.+. . -+..||.+|+ .|-.|+.+|....
T Consensus 25 ~~~C~~C~~~I~-~~~v~--a-~~~~~H~~CF--------~C~~C~~~L~~~~ 65 (90)
T 2dar_A 25 TPMCAHCNQVIR-GPFLV--A-LGKSWHPEEF--------NCAHCKNTMAYIG 65 (90)
T ss_dssp CCBBSSSCCBCC-SCEEE--E-TTEEECTTTC--------BCSSSCCBCSSSC
T ss_pred CCCCccCCCEec-ceEEE--E-CCccccccCC--------ccCCCCCCCCCCE
Confidence 346888888874 33332 2 5788888886 5888888886543
No 180
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.69 E-value=11 Score=22.95 Aligned_cols=38 Identities=18% Similarity=0.328 Sum_probs=26.5
Q ss_pred cccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCC
Q 037839 109 ATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPL 158 (177)
Q Consensus 109 ~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~ 158 (177)
...|+-|-..+.. +. +.. -+..||.+|+ .|-.|+.+|.
T Consensus 15 ~~~C~~C~~~I~~-~~--~~a-~~~~~H~~CF--------~C~~C~~~L~ 52 (79)
T 1x62_A 15 LPMCDKCGTGIVG-VF--VKL-RDRHRHPECY--------VCTDCGTNLK 52 (79)
T ss_dssp CCCCSSSCCCCCS-SC--EEC-SSCEECTTTT--------SCSSSCCCHH
T ss_pred CCccccCCCCccC-cE--EEE-CcceeCcCcC--------eeCCCCCCCC
Confidence 3469999888764 22 233 5788998886 5888887764
No 181
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=46.31 E-value=13 Score=26.44 Aligned_cols=32 Identities=31% Similarity=0.652 Sum_probs=23.4
Q ss_pred CcccCcccccccc--CCCceeecCCCCCcccHhhH
Q 037839 108 TATCCSICLADYR--SSDMLRLLPDCSHLFHVKCV 140 (177)
Q Consensus 108 ~~~~C~ICl~~f~--~~~~v~~l~~C~H~fH~~Ci 140 (177)
.+..|++|...|. .+...... +|+|.+|..|-
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~-~C~~~VC~~C~ 100 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCL-ECSLFVCKSCS 100 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECT-TTCCEECGGGE
T ss_pred CCccchhhcCccccccCCCCcCC-CCCchhhcccc
Confidence 4678999999874 33333334 59999999997
No 182
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.98 E-value=17 Score=22.14 Aligned_cols=39 Identities=26% Similarity=0.571 Sum_probs=27.8
Q ss_pred ccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCCCC
Q 037839 110 TCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPLPT 160 (177)
Q Consensus 110 ~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~~~ 160 (177)
..|+-|-..+. ++.+. . -+..||.+|+ .|-.|+.+|...
T Consensus 16 ~~C~~C~~~I~-~~~v~--a-~~~~wH~~CF--------~C~~C~~~L~~~ 54 (81)
T 1v6g_A 16 TRCFSCDQFIE-GEVVS--A-LGKTYHPDCF--------VCAVCRLPFPPG 54 (81)
T ss_dssp CBCTTTCCBCC-SCCEE--E-TTEEECTTTS--------SCSSSCCCCCSS
T ss_pred CcCccccCEec-cceEE--E-CCceeCccCC--------ccccCCCCCCCC
Confidence 36999988877 33333 2 5788998887 588888887643
No 183
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=44.55 E-value=9.3 Score=25.21 Aligned_cols=12 Identities=33% Similarity=0.930 Sum_probs=10.5
Q ss_pred ccHhhHHHHHhc
Q 037839 135 FHVKCVDPWLRL 146 (177)
Q Consensus 135 fH~~Ci~~Wl~~ 146 (177)
||..|+..|+..
T Consensus 43 FCRNCLskWy~~ 54 (105)
T 2o35_A 43 FCRNCLSNWYRE 54 (105)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999853
No 184
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=44.22 E-value=9.4 Score=25.12 Aligned_cols=11 Identities=36% Similarity=1.011 Sum_probs=10.2
Q ss_pred ccHhhHHHHHh
Q 037839 135 FHVKCVDPWLR 145 (177)
Q Consensus 135 fH~~Ci~~Wl~ 145 (177)
||..|+..|+.
T Consensus 42 FCRNCLskWy~ 52 (104)
T 3fyb_A 42 FCRNCLAKWLM 52 (104)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999985
No 185
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.14 E-value=14 Score=21.78 Aligned_cols=39 Identities=15% Similarity=0.472 Sum_probs=24.7
Q ss_pred ccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCCCC
Q 037839 110 TCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPLPT 160 (177)
Q Consensus 110 ~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~~~ 160 (177)
..|+-|-..+.. +.+. . -+..||.+|+ .|-.|+.+|...
T Consensus 6 ~~C~~C~~~I~~-~~~~--a-~~~~~H~~CF--------~C~~C~~~L~~~ 44 (70)
T 2d8x_A 6 SGCHQCGEFIIG-RVIK--A-MNNSWHPECF--------RCDLCQEVLADI 44 (70)
T ss_dssp SBCSSSCCBCCS-CCEE--E-TTEEECTTTS--------BCSSSCCBCSSS
T ss_pred CcCccCCCEecc-eEEE--E-CcccccccCC--------EeCCCCCcCCCC
Confidence 457778777652 3322 2 4667887776 577787777654
No 186
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=43.67 E-value=13 Score=21.76 Aligned_cols=41 Identities=15% Similarity=0.376 Sum_probs=28.1
Q ss_pred cCccccccccCCCceeecCCCCCccc--HhhHHHHHhcCCCCcCCCCCCCCCC
Q 037839 111 CCSICLADYRSSDMLRLLPDCSHLFH--VKCVDPWLRLHPTCPVCRTSPLPTP 161 (177)
Q Consensus 111 ~C~ICl~~f~~~~~v~~l~~C~H~fH--~~Ci~~Wl~~~~~CP~CR~~~~~~~ 161 (177)
.|+-|-..+..++..... -+..|| .+|+ .|-.|+.+|....
T Consensus 4 ~C~~C~~~I~~~~~~v~a--~~~~wH~~~~CF--------~C~~C~~~L~~~~ 46 (65)
T 2iyb_E 4 VCQGCHNAIDPEVQRVTY--NNFSWHASTECF--------LCSCCSKCLIGQK 46 (65)
T ss_dssp ECTTTSSEECTTSCEEEE--TTEEEETTTTTS--------BCTTTCCBCTTSC
T ss_pred CCcCCCCeeccCceEEEE--CCCccCCCCCCE--------ECCCCCCcCCCCc
Confidence 588888887754333222 577899 8886 5888888886543
No 187
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.53 E-value=24 Score=21.13 Aligned_cols=36 Identities=19% Similarity=0.412 Sum_probs=22.5
Q ss_pred cCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCC
Q 037839 111 CCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPL 158 (177)
Q Consensus 111 ~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~ 158 (177)
.|+-|-..+.. +.+ .. -+..||.+|+ .|-.|+.+|.
T Consensus 7 ~C~~C~~~I~~-~~v--~a-~~~~wH~~CF--------~C~~C~~~L~ 42 (73)
T 1wig_A 7 GCDSCEKYITG-RVL--EA-GEKHYHPSCA--------LCVRCGQMFA 42 (73)
T ss_dssp SCSSSCCCCSS-CCB--CC-SSCCBCTTTS--------CCSSSCCCCC
T ss_pred CcccCCCEecC-eeE--Ee-CCCCCCCCcC--------EeCCCCCCCC
Confidence 57777776654 222 22 5677787775 5777777765
No 188
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=43.04 E-value=6 Score=20.76 Aligned_cols=15 Identities=27% Similarity=0.636 Sum_probs=10.4
Q ss_pred cccCccccccccCCC
Q 037839 109 ATCCSICLADYRSSD 123 (177)
Q Consensus 109 ~~~C~ICl~~f~~~~ 123 (177)
+..|++|+..+...+
T Consensus 5 GFiCP~C~~~l~s~~ 19 (34)
T 3mjh_B 5 GFICPQCMKSLGSAD 19 (34)
T ss_dssp EEECTTTCCEESSHH
T ss_pred ccCCcHHHHHcCCHH
Confidence 456888888776543
No 189
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=42.38 E-value=4.3 Score=24.95 Aligned_cols=17 Identities=24% Similarity=0.382 Sum_probs=10.5
Q ss_pred HHhcCCCCcCCCCCCCC
Q 037839 143 WLRLHPTCPVCRTSPLP 159 (177)
Q Consensus 143 Wl~~~~~CP~CR~~~~~ 159 (177)
|+..--.||.|++++..
T Consensus 4 ~LLeiL~CP~ck~~L~~ 20 (69)
T 2pk7_A 4 KLLDILACPICKGPLKL 20 (69)
T ss_dssp CGGGTCCCTTTCCCCEE
T ss_pred HHHhheeCCCCCCcCeE
Confidence 34444568888777654
No 190
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.99 E-value=26 Score=21.28 Aligned_cols=40 Identities=18% Similarity=0.314 Sum_probs=27.6
Q ss_pred cccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCCCC
Q 037839 109 ATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPLPT 160 (177)
Q Consensus 109 ~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~~~ 160 (177)
...|+-|-..+. +..+ .. -+..||.+|+ .|-.|+.+|...
T Consensus 15 ~~~C~~C~~~I~-~~~v--~a-~~~~~H~~CF--------~C~~C~~~L~~~ 54 (79)
T 2cor_A 15 KYICQKCHAIID-EQPL--IF-KNDPYHPDHF--------NCANCGKELTAD 54 (79)
T ss_dssp CCBCTTTCCBCC-SCCC--CC-SSSCCCTTTS--------BCSSSCCBCCTT
T ss_pred CCCCccCCCEec-ceEE--EE-CcceeCCCCC--------EeCCCCCccCCC
Confidence 346888888877 3332 22 5778888886 588888887644
No 191
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=39.97 E-value=4.5 Score=24.03 Aligned_cols=36 Identities=19% Similarity=0.505 Sum_probs=23.8
Q ss_pred ccCccccccccCCCceeecC--C--CCCcccHhhHHHHHh
Q 037839 110 TCCSICLADYRSSDMLRLLP--D--CSHLFHVKCVDPWLR 145 (177)
Q Consensus 110 ~~C~ICl~~f~~~~~v~~l~--~--C~H~fH~~Ci~~Wl~ 145 (177)
..|+-|...++..+-...+. . |+|.|+..|...|-.
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~ 46 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEP 46 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCccc
Confidence 35777777776655333333 2 778888888888753
No 192
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.85 E-value=16 Score=22.14 Aligned_cols=38 Identities=18% Similarity=0.438 Sum_probs=25.9
Q ss_pred ccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCCC
Q 037839 110 TCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPLP 159 (177)
Q Consensus 110 ~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~~ 159 (177)
..|+-|-..+... . +.. -+..||.+|+ .|-.|+.+|..
T Consensus 16 ~~C~~C~~~I~~~-~--v~a-~~~~~H~~CF--------~C~~C~~~L~~ 53 (80)
T 2cuq_A 16 PRCARCSKTLTQG-G--VTY-RDQPWHRECL--------VCTGCQTPLAG 53 (80)
T ss_dssp CCCTTTCCCCCSC-C--EES-SSSEECTTTC--------BCSSSCCBCTT
T ss_pred CcCCCCCCEecCc-E--EEE-CCchhhhhhC--------CcccCCCcCCC
Confidence 4588888877543 2 223 5778888876 58888888754
No 193
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=39.77 E-value=15 Score=18.43 Aligned_cols=28 Identities=14% Similarity=0.375 Sum_probs=18.8
Q ss_pred ccCccccccccCCCceeecCCCCCcccHhhH
Q 037839 110 TCCSICLADYRSSDMLRLLPDCSHLFHVKCV 140 (177)
Q Consensus 110 ~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci 140 (177)
..|+.|-...-..+.+. . -|..||..|+
T Consensus 4 ~~C~~C~k~Vy~~Ek~~--~-~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVN--C-LDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGCCC--S-SSSCCCGGGC
T ss_pred CcCCccCCEEecceeEE--E-CCeEecccCC
Confidence 35888887765544433 2 5788999884
No 194
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=39.09 E-value=2.3 Score=26.73 Aligned_cols=19 Identities=21% Similarity=0.716 Sum_probs=14.9
Q ss_pred CCCCcccHhhHHHHHhcCCCC
Q 037839 130 DCSHLFHVKCVDPWLRLHPTC 150 (177)
Q Consensus 130 ~C~H~fH~~Ci~~Wl~~~~~C 150 (177)
.|||.||..|-..|-. ..|
T Consensus 55 ~C~~~FC~~C~~~wH~--~~C 73 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE--GEC 73 (80)
T ss_dssp CCSCCEETTTTEECCS--SCS
T ss_pred CCCCeeccccCccccC--Ccc
Confidence 4999999999988833 445
No 195
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.95 E-value=15 Score=21.61 Aligned_cols=38 Identities=18% Similarity=0.449 Sum_probs=22.5
Q ss_pred ccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCCC
Q 037839 110 TCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPLP 159 (177)
Q Consensus 110 ~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~~ 159 (177)
..|+-|-..+.. +.+.. -+..||.+|+ .|..|+.+|..
T Consensus 6 ~~C~~C~~~I~~-~~~~a---~~~~~H~~CF--------~C~~C~~~L~~ 43 (69)
T 2cur_A 6 SGCVKCNKAITS-GGITY---QDQPWHADCF--------VCVTCSKKLAG 43 (69)
T ss_dssp CCCSSSCCCCCT-TCEEE---TTEEECTTTT--------BCTTTCCBCTT
T ss_pred CCCcccCCEeCc-ceEEE---CccccccCcC--------EECCCCCCCCC
Confidence 357777776653 33322 4566777775 47777777653
No 196
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=38.63 E-value=3.3 Score=24.50 Aligned_cols=42 Identities=33% Similarity=0.726 Sum_probs=25.5
Q ss_pred cccCccccccccCCCceeecCC--CC-CcccHhhHHHHHhc----CCCCcCCCC
Q 037839 109 ATCCSICLADYRSSDMLRLLPD--CS-HLFHVKCVDPWLRL----HPTCPVCRT 155 (177)
Q Consensus 109 ~~~C~ICl~~f~~~~~v~~l~~--C~-H~fH~~Ci~~Wl~~----~~~CP~CR~ 155 (177)
...| ||-... .++.+ .--. |. ..||..|+. +.. +..||.|++
T Consensus 9 ~~yC-~C~~~~-~g~mi-~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 9 PTYC-LCHQVS-YGEMI-GCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CEET-TTTEEC-CSEEE-ECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CcEE-ECCCCC-CCCee-EeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 4457 887753 23322 2223 55 689999997 322 347888864
No 197
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=36.46 E-value=19 Score=26.58 Aligned_cols=25 Identities=24% Similarity=0.632 Sum_probs=16.2
Q ss_pred eeecCCCCCcccHhhHHHHHhcCCCCcCCCCC
Q 037839 125 LRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTS 156 (177)
Q Consensus 125 v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~ 156 (177)
....+.|||++- . .....||+|..+
T Consensus 171 ~~~C~~CG~i~~-g------~~p~~CP~C~~~ 195 (202)
T 1yuz_A 171 FHLCPICGYIHK-G------EDFEKCPICFRP 195 (202)
T ss_dssp EEECSSSCCEEE-S------SCCSBCTTTCCB
T ss_pred EEEECCCCCEEc-C------cCCCCCCCCCCC
Confidence 444456999964 2 223589999875
No 198
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=35.87 E-value=20 Score=25.75 Aligned_cols=26 Identities=23% Similarity=0.444 Sum_probs=16.4
Q ss_pred ceeecCCCCCcccHhhHHHHHhcCCCCcCCCCC
Q 037839 124 MLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTS 156 (177)
Q Consensus 124 ~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~ 156 (177)
...+.+.|||++-. .....||+|..+
T Consensus 137 ~~~~C~~CG~i~~~-------~~p~~CP~Cg~~ 162 (170)
T 3pwf_A 137 KVYICPICGYTAVD-------EAPEYCPVCGAP 162 (170)
T ss_dssp CEEECTTTCCEEES-------CCCSBCTTTCCB
T ss_pred CeeEeCCCCCeeCC-------CCCCCCCCCCCC
Confidence 34445569998752 223489999764
No 199
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=35.83 E-value=28 Score=23.12 Aligned_cols=51 Identities=8% Similarity=-0.071 Sum_probs=35.8
Q ss_pred CcccCccccccccC-CCceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCCCC
Q 037839 108 TATCCSICLADYRS-SDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPLPT 160 (177)
Q Consensus 108 ~~~~C~ICl~~f~~-~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~~~ 160 (177)
.-..|..|-..+.. +... ... =|.+||..|...-+..+..|..|..++.+.
T Consensus 31 ~CF~C~~C~~~L~~~~~~~-~~~-~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~ 82 (122)
T 1m3v_A 31 RCLKCSSCQAQLGDIGTSS-YTK-SGMILCRNDYIRLFGNSGAGGSGGHMGSGG 82 (122)
T ss_dssp HHHCCSSSCCCTTTSEECC-EEE-TTEEECHHHHHHHHCCCCSSSCSSCCSCCE
T ss_pred hCCCcCCCCCcccccCCeE-EEE-CCeeecHHHHHHHcCCCCccccCCCCcCch
Confidence 44579999888752 2222 222 578899999988776555899999988764
No 200
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Probab=35.35 E-value=7.9 Score=35.18 Aligned_cols=21 Identities=14% Similarity=0.105 Sum_probs=0.0
Q ss_pred ccchhhHHHHHHHHHHHHHHH
Q 037839 21 FGYGIGVSVGILILITTITLA 41 (177)
Q Consensus 21 ~~~~i~i~l~il~li~~i~l~ 41 (177)
.+..++|++++++++++++++
T Consensus 704 ~~aii~il~~~~~ll~~~ll~ 724 (880)
T 1q55_A 704 LPIILVILGSVLALLILFLLL 724 (880)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334455666666665544443
No 201
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=33.77 E-value=16 Score=24.66 Aligned_cols=39 Identities=18% Similarity=0.436 Sum_probs=28.6
Q ss_pred cccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCC
Q 037839 109 ATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPL 158 (177)
Q Consensus 109 ~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~ 158 (177)
...|+-|-........+.. -+..||.+|+ .|-.|+.+|.
T Consensus 61 ~~~C~~C~~~I~~~~~v~a---~~~~wH~~CF--------~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYA---MDSYWHSRCL--------KCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEE---TTEEEETTTS--------BCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEEe---CCcEEccccc--------CcCcCCCccc
Confidence 3569999988774422332 5788999986 6999998885
No 202
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=33.02 E-value=6.4 Score=24.00 Aligned_cols=19 Identities=21% Similarity=0.133 Sum_probs=13.3
Q ss_pred HHHhcCCCCcCCCCCCCCC
Q 037839 142 PWLRLHPTCPVCRTSPLPT 160 (177)
Q Consensus 142 ~Wl~~~~~CP~CR~~~~~~ 160 (177)
.|+..--.||.|+.++...
T Consensus 5 ~~LLeiL~CP~ck~~L~~~ 23 (67)
T 2jny_A 5 PQLLEVLACPKDKGPLRYL 23 (67)
T ss_dssp GGGTCCCBCTTTCCBCEEE
T ss_pred HHHHHHhCCCCCCCcCeEe
Confidence 4555555799999987643
No 203
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=32.42 E-value=25 Score=23.45 Aligned_cols=51 Identities=10% Similarity=0.149 Sum_probs=27.2
Q ss_pred CCcccCccccccccC-CCceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCCC
Q 037839 107 STATCCSICLADYRS-SDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPLP 159 (177)
Q Consensus 107 ~~~~~C~ICl~~f~~-~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~~ 159 (177)
..-..|..|-..+.. +...... =|..||..|...-+.....|..|..++.+
T Consensus 27 ~~CF~C~~C~~~L~~~~~~~~~~--~g~~yC~~~y~~~~~~~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 27 EDCLSCDLCGCRLGEVGRRLYYK--LGRKLCRRDYLRLFGQDGLCASCDKRIRA 78 (131)
T ss_dssp TTTCBCTTTCCBCSSTTCCEEEE--TTEEECHHHHHHHHCCCEECTTTCCEECT
T ss_pred HHHcccCcCCCccccCCCeEEEE--CCEEeecCchhhhCCCccChhhcCCccCc
Confidence 344567777666643 2222222 35667777766644332357777666643
No 204
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.27 E-value=22 Score=21.48 Aligned_cols=40 Identities=23% Similarity=0.406 Sum_probs=26.5
Q ss_pred ccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCCCCC
Q 037839 110 TCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPLPTP 161 (177)
Q Consensus 110 ~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~~~~ 161 (177)
..|+-|-..+.. +.+.. -+..||.+|+ .|-.|+.+|....
T Consensus 16 ~~C~~C~~~I~~-~~v~a---~~~~~H~~CF--------~C~~C~~~L~~~~ 55 (80)
T 1x3h_A 16 PKCGGCNRPVLE-NYLSA---MDTVWHPECF--------VCGDCFTSFSTGS 55 (80)
T ss_dssp CBCTTTCCBCCS-SCEEE---TTEEECTTTC--------BCSSSCCBSCSSC
T ss_pred CccccCCCeecc-eeEEE---CCCeEecCcC--------ChhhCCCCCCCCc
Confidence 358888877764 33322 4677888776 5888888876543
No 205
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=31.10 E-value=44 Score=22.05 Aligned_cols=29 Identities=31% Similarity=0.576 Sum_probs=19.3
Q ss_pred CCCcccHhhH---H---HHHhc-----CCCCcCCCCCCCC
Q 037839 131 CSHLFHVKCV---D---PWLRL-----HPTCPVCRTSPLP 159 (177)
Q Consensus 131 C~H~fH~~Ci---~---~Wl~~-----~~~CP~CR~~~~~ 159 (177)
|++.||..|. + .-+.+ ...||.|.....+
T Consensus 8 c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~~~~~ 47 (140)
T 2ku7_A 8 CDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHVD 47 (140)
T ss_dssp CSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTTTSCC
T ss_pred CCCccCCcccccCHHHHHHHhhccccceeeCccccccccC
Confidence 9999999995 1 11222 3579999765443
No 206
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.10 E-value=17 Score=22.08 Aligned_cols=40 Identities=23% Similarity=0.471 Sum_probs=26.6
Q ss_pred cccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCCCC
Q 037839 109 ATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPLPT 160 (177)
Q Consensus 109 ~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~~~ 160 (177)
...|+-|-..+.. ..+ .. -+..||.+|+ .|..|+.+|...
T Consensus 15 ~~~C~~C~~~I~~-~~~--~a-~~~~~H~~CF--------~C~~C~~~L~~~ 54 (81)
T 2dlo_A 15 LEKCATCSQPILD-RIL--RA-MGKAYHPGCF--------TCVVCHRGLDGI 54 (81)
T ss_dssp CCBCTTTCCBCCS-CCE--EE-TTEEECTTTC--------BCSSSCCBCTTS
T ss_pred CCccccCCCeecc-eeE--EE-CCccccHHhc--------CcccCCCccCCC
Confidence 3468888887763 222 22 5677888876 588888887644
No 207
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=30.78 E-value=18 Score=26.46 Aligned_cols=24 Identities=17% Similarity=0.436 Sum_probs=15.0
Q ss_pred ecCCCCCcccHhhHHHHHhcCCCCcCCCCC
Q 037839 127 LLPDCSHLFHVKCVDPWLRLHPTCPVCRTS 156 (177)
Q Consensus 127 ~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~ 156 (177)
..+.|||++-.+ .-...||+|..+
T Consensus 157 ~C~~CG~~~~g~------~~p~~CP~C~~~ 180 (191)
T 1lko_A 157 RCRNCGYVHEGT------GAPELCPACAHP 180 (191)
T ss_dssp EETTTCCEEEEE------ECCSBCTTTCCB
T ss_pred EECCCCCEeeCC------CCCCCCCCCcCC
Confidence 334599986422 122389999875
No 208
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=29.21 E-value=13 Score=18.57 Aligned_cols=10 Identities=30% Similarity=0.823 Sum_probs=6.9
Q ss_pred CCCcCCCCCC
Q 037839 148 PTCPVCRTSP 157 (177)
Q Consensus 148 ~~CP~CR~~~ 157 (177)
..||+|+..+
T Consensus 4 ~~CpvCk~q~ 13 (28)
T 2jvx_A 4 FCCPKCQYQA 13 (28)
T ss_dssp EECTTSSCEE
T ss_pred ccCccccccC
Confidence 3588887654
No 209
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=28.95 E-value=32 Score=24.76 Aligned_cols=37 Identities=19% Similarity=0.418 Sum_probs=18.2
Q ss_pred cCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCC
Q 037839 111 CCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPL 158 (177)
Q Consensus 111 ~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~ 158 (177)
.|+.|-..+...+.+.. -+..||.+|+ .|-.|+.+|.
T Consensus 117 ~C~~C~~~I~~~~~v~a---~~~~~H~~CF--------~C~~C~~~L~ 153 (192)
T 1b8t_A 117 GCPRCGQAVYAAEKVIG---AGKSWHKSCF--------RCAKCGKSLE 153 (192)
T ss_dssp ECTTTSCEECSSSCEEE---TTEEECTTTC--------BCTTTCCBCC
T ss_pred cCCCCCCEecCcEEEec---CCCccchhcC--------CccccCCCCC
Confidence 46666655544433321 3445555553 3555555553
No 210
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=28.92 E-value=23 Score=25.55 Aligned_cols=49 Identities=14% Similarity=0.144 Sum_probs=21.7
Q ss_pred CcccCccccccccC-CCceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCC
Q 037839 108 TATCCSICLADYRS-SDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPL 158 (177)
Q Consensus 108 ~~~~C~ICl~~f~~-~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~ 158 (177)
.-..|..|-..+.. +...... =|.+||..|...-+..+..|+.|..++.
T Consensus 31 ~CF~C~~C~~~L~~~g~~~~~~--~g~~yC~~cy~~~~~~~~~C~~C~~~I~ 80 (188)
T 1rut_X 31 RCLKCSSCQAQLGDIGTSSYTK--SGMILCRNDYIRLFGNSGACSACGQSIP 80 (188)
T ss_dssp GGCBCTTTCCBHHHHCSEEEEE--TTEEECHHHHHHHHSCCEECTTTCCEEC
T ss_pred cCcccCCCCcccccCCceEEEe--CCccccccccccccccCCccccCCCccc
Confidence 34455555555443 2222111 3455555555543322124555555554
No 211
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=27.90 E-value=16 Score=17.82 Aligned_cols=9 Identities=44% Similarity=1.172 Sum_probs=6.3
Q ss_pred CCcCCCCCC
Q 037839 149 TCPVCRTSP 157 (177)
Q Consensus 149 ~CP~CR~~~ 157 (177)
+||+|.+.+
T Consensus 8 qcpvcqq~m 16 (29)
T 3vhs_A 8 QCPVCQQMM 16 (29)
T ss_dssp ECTTTCCEE
T ss_pred eChHHHHhC
Confidence 588887643
No 212
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=27.47 E-value=42 Score=20.36 Aligned_cols=47 Identities=26% Similarity=0.516 Sum_probs=29.0
Q ss_pred cccCccccccccC-CCceeecCCCCCcccHhhHHHHHh-----cCCCCcCCCCCC
Q 037839 109 ATCCSICLADYRS-SDMLRLLPDCSHLFHVKCVDPWLR-----LHPTCPVCRTSP 157 (177)
Q Consensus 109 ~~~C~ICl~~f~~-~~~v~~l~~C~H~fH~~Ci~~Wl~-----~~~~CP~CR~~~ 157 (177)
...| ||-..+.. +..|.-- .|.-.||..|+..--. ....||.|+...
T Consensus 10 ~~yC-iC~~~~~~~~~MI~Cd-~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~~ 62 (75)
T 3kqi_A 10 PVYC-VCRLPYDVTRFMIECD-ACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKTH 62 (75)
T ss_dssp CEET-TTTEECCTTSCEEECT-TTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHHH
T ss_pred eeEE-ECCCcCCCCCCEEEcC-CCCCCEecccccccccccCCCCEEECCCCcccC
Confidence 3345 78766543 2344444 4899999999954211 245799997543
No 213
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=26.86 E-value=64 Score=22.21 Aligned_cols=23 Identities=17% Similarity=0.229 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhccC
Q 037839 26 GVSVGILILITTITLASYFCTRG 48 (177)
Q Consensus 26 ~i~l~il~li~~i~l~~~~~~r~ 48 (177)
.+++++..++++-+++.|...|+
T Consensus 57 L~vmgffgff~~GImLsYiRSKk 79 (138)
T 2k21_A 57 LMVLGFFGFFTLGIMLSYIRSKK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHhhh
Confidence 44455555555555555544433
No 214
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=26.43 E-value=45 Score=28.16 Aligned_cols=48 Identities=25% Similarity=0.481 Sum_probs=30.6
Q ss_pred CcccCcccccccc-CCCceeecCCCCCcccHhhHHHHHh-----cCCCCcCCCCCC
Q 037839 108 TATCCSICLADYR-SSDMLRLLPDCSHLFHVKCVDPWLR-----LHPTCPVCRTSP 157 (177)
Q Consensus 108 ~~~~C~ICl~~f~-~~~~v~~l~~C~H~fH~~Ci~~Wl~-----~~~~CP~CR~~~ 157 (177)
....| ||-..+. .+..|..-. |.-.||..|+.---. ....||.|+...
T Consensus 36 ~~~yC-~C~~~~d~~~~MIqCd~-C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 89 (488)
T 3kv5_D 36 PPVYC-VCRQPYDVNRFMIECDI-CKDWFHGSCVGVEEHHAVDIDLYHCPNCAVLH 89 (488)
T ss_dssp CCEET-TTTEECCTTSCEEEBTT-TCCEEEHHHHTCCGGGGGGEEEBCCHHHHHHH
T ss_pred CCeEE-eCCCcCCCCCCeEEccC-CCCceeeeecCcCcccccCCCEEECCCCcCCc
Confidence 34456 8887764 333454444 999999999843211 235899998543
No 215
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=26.33 E-value=21 Score=21.63 Aligned_cols=13 Identities=23% Similarity=0.713 Sum_probs=10.1
Q ss_pred CCCcCCCCCCCCC
Q 037839 148 PTCPVCRTSPLPT 160 (177)
Q Consensus 148 ~~CP~CR~~~~~~ 160 (177)
-.||.|+.++...
T Consensus 9 L~CP~ck~~L~~~ 21 (68)
T 2hf1_A 9 LVCPLCKGPLVFD 21 (68)
T ss_dssp CBCTTTCCBCEEE
T ss_pred eECCCCCCcCeEe
Confidence 4699999987643
No 216
>1zza_A Stannin, AG8_1; helix, membrane protein; NMR {Homo sapiens}
Probab=26.06 E-value=53 Score=20.28 Aligned_cols=28 Identities=18% Similarity=0.017 Sum_probs=11.5
Q ss_pred CCCccchhhHHHHHHHHHHHHHHHHHhh
Q 037839 18 IGGFGYGIGVSVGILILITTITLASYFC 45 (177)
Q Consensus 18 ~~~~~~~i~i~l~il~li~~i~l~~~~~ 45 (177)
..|.-..+++++++..+-.++...+.|.
T Consensus 11 ttgvvtv~viliavaalg~li~gcwcyl 38 (90)
T 1zza_A 11 TTGVVTVIVILIAIAALGALILGCWCYL 38 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CcceEEehhHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433443333333
No 217
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=25.80 E-value=39 Score=17.70 Aligned_cols=14 Identities=14% Similarity=0.494 Sum_probs=6.7
Q ss_pred cchhhHHHHHHHHH
Q 037839 22 GYGIGVSVGILILI 35 (177)
Q Consensus 22 ~~~i~i~l~il~li 35 (177)
.+++.+++|+.+++
T Consensus 7 ~malt~i~gl~vif 20 (40)
T 2l9u_A 7 TMALTVIAGLVVIF 20 (40)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34455555544443
No 218
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=25.43 E-value=13 Score=31.21 Aligned_cols=45 Identities=27% Similarity=0.442 Sum_probs=28.6
Q ss_pred ccccccc-CCCceeecCCCCCcccHhhHHHH---H--hcCCCCcCCCCCCCC
Q 037839 114 ICLADYR-SSDMLRLLPDCSHLFHVKCVDPW---L--RLHPTCPVCRTSPLP 159 (177)
Q Consensus 114 ICl~~f~-~~~~v~~l~~C~H~fH~~Ci~~W---l--~~~~~CP~CR~~~~~ 159 (177)
||-..+. .+..|..- .|...||..|+.-- . ..+..||.|+....+
T Consensus 9 iC~~~~d~~~~MIqCD-~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~~~~~ 59 (447)
T 3kv4_A 9 LCRLPYDVTRFMIECD-MCQDWFHGSCVGVEEEKAADIDLYHCPNCEVLHGP 59 (447)
T ss_dssp TTTEECCTTSCEEECT-TTCCEEEHHHHTCCHHHHTTEEECCCHHHHHHHCC
T ss_pred eCCCcCCCCCCeEEcC-CCCcccccccCCcCcccccCCCEEECCCCccccCC
Confidence 7777654 23344444 49999999998421 1 134689999775443
No 219
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=25.30 E-value=30 Score=24.71 Aligned_cols=49 Identities=14% Similarity=0.169 Sum_probs=29.4
Q ss_pred CCCCcccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCCC
Q 037839 105 KDSTATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPLP 159 (177)
Q Consensus 105 ~~~~~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~~ 159 (177)
....-..|..|-..+.... .. . =|..||..|...- -...|..|..++.+
T Consensus 83 wH~~CF~C~~C~~~L~~~~--f~-~-~g~~yC~~~y~~~--f~~kC~~C~~~I~~ 131 (182)
T 2jtn_A 83 WHSKCLKCSDCHVPLAERC--FS-R-GESVYCKDDFFKR--FGTKCAACQLGIPP 131 (182)
T ss_dssp ECSSTTSCTTTCCCCSSCC--EE-E-TTEEECHHHHHHT--TSCCCTTTCCCCCS
T ss_pred EccccCccCCCCCccCCCc--ee-E-CCEeeecCccccc--cccccccCCCccCC
Confidence 3445567888877776543 12 2 4677777776552 23467777776654
No 220
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=25.22 E-value=21 Score=23.43 Aligned_cols=41 Identities=17% Similarity=0.381 Sum_probs=25.6
Q ss_pred ccCccccccccCCCceeecCCCCCcccHhhHHHHHhcCCCCcCCCCCCCC
Q 037839 110 TCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRTSPLP 159 (177)
Q Consensus 110 ~~C~ICl~~f~~~~~v~~l~~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~~~ 159 (177)
..|+.|..++... -++.+|..|-.. +.....||-|.++|.-
T Consensus 33 ~~CP~Cq~eL~~~--------g~~~hC~~C~~~-f~~~a~CPdC~q~Lev 73 (101)
T 2jne_A 33 LHCPQCQHVLDQD--------NGHARCRSCGEF-IEMKALCPDCHQPLQV 73 (101)
T ss_dssp CBCSSSCSBEEEE--------TTEEEETTTCCE-EEEEEECTTTCSBCEE
T ss_pred ccCccCCCcceec--------CCEEECccccch-hhccccCcchhhHHHH
Confidence 4699998886532 233335555443 3555679999888753
No 221
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=25.03 E-value=83 Score=18.62 Aligned_cols=35 Identities=17% Similarity=0.433 Sum_probs=27.3
Q ss_pred cccCccccccccCCCceeecCCCCCcccHh-hHHHH
Q 037839 109 ATCCSICLADYRSSDMLRLLPDCSHLFHVK-CVDPW 143 (177)
Q Consensus 109 ~~~C~ICl~~f~~~~~v~~l~~C~H~fH~~-Ci~~W 143 (177)
...|+-|-..+..+.....-...-|+||.. ||..+
T Consensus 20 ~v~C~~CKk~lqKGQtAyqrkGs~~LFCS~~CL~~f 55 (62)
T 2das_A 20 KITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLSSF 55 (62)
T ss_dssp SCBCTTTCCBCCTTSCCEECTTCCCEESSHHHHHHH
T ss_pred ccChhhccchhhcCceeeeecCchhheechHHHccc
Confidence 456999999999988766665577999754 98874
No 222
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=24.59 E-value=29 Score=23.19 Aligned_cols=22 Identities=36% Similarity=0.842 Sum_probs=15.3
Q ss_pred CCCCcccHhhHHHHHhcCC-CCcCCCCCC
Q 037839 130 DCSHLFHVKCVDPWLRLHP-TCPVCRTSP 157 (177)
Q Consensus 130 ~C~H~fH~~Ci~~Wl~~~~-~CP~CR~~~ 157 (177)
+|||.|-.+ .... .||.|.++.
T Consensus 78 ~CG~~~e~~------~~~~~~CP~Cgs~~ 100 (119)
T 2kdx_A 78 DCSHVFKPN------ALDYGVCEKCHSKN 100 (119)
T ss_dssp SSSCEECSC------CSTTCCCSSSSSCC
T ss_pred CCCCEEeCC------CCCCCcCccccCCC
Confidence 499988642 2345 799998764
No 223
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=24.41 E-value=6.7 Score=23.96 Aligned_cols=16 Identities=19% Similarity=0.090 Sum_probs=11.0
Q ss_pred hcCCCCcCCCCCCCCC
Q 037839 145 RLHPTCPVCRTSPLPT 160 (177)
Q Consensus 145 ~~~~~CP~CR~~~~~~ 160 (177)
..--.||.|+.++...
T Consensus 6 L~iL~CP~ck~~L~~~ 21 (68)
T 2jr6_A 6 LDILVCPVTKGRLEYH 21 (68)
T ss_dssp SCCCBCSSSCCBCEEE
T ss_pred hhheECCCCCCcCeEe
Confidence 3334699999887643
No 224
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=23.20 E-value=6 Score=25.06 Aligned_cols=17 Identities=35% Similarity=1.023 Sum_probs=13.0
Q ss_pred ecCCCCCcccHhhHHHH
Q 037839 127 LLPDCSHLFHVKCVDPW 143 (177)
Q Consensus 127 ~l~~C~H~fH~~Ci~~W 143 (177)
.-+.|+|.||..|-..|
T Consensus 45 ~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 45 TCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp ECTTTCCEECSSSCSBC
T ss_pred EeCCCCCccccccCCch
Confidence 33359999998888777
No 225
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=23.15 E-value=19 Score=25.44 Aligned_cols=22 Identities=23% Similarity=0.539 Sum_probs=14.6
Q ss_pred CCCCcccHhhHHHHHhcCCCCcCCCCCC
Q 037839 130 DCSHLFHVKCVDPWLRLHPTCPVCRTSP 157 (177)
Q Consensus 130 ~C~H~fH~~Ci~~Wl~~~~~CP~CR~~~ 157 (177)
.|||.|-.. .....||.|-.++
T Consensus 137 ~Cg~~~~~~------~~~~~Cp~CG~~~ 158 (165)
T 2lcq_A 137 GCGRKFSTL------PPGGVCPDCGSKV 158 (165)
T ss_dssp SSCCEESSC------CGGGBCTTTCCBE
T ss_pred CCCCcccCC------CCCCcCCCCCCcc
Confidence 499988533 2234799998764
No 226
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=22.84 E-value=64 Score=25.94 Aligned_cols=36 Identities=19% Similarity=0.275 Sum_probs=24.5
Q ss_pred CCcccCcccccccc-CCCceeecCCCCCcccHhhHHH
Q 037839 107 STATCCSICLADYR-SSDMLRLLPDCSHLFHVKCVDP 142 (177)
Q Consensus 107 ~~~~~C~ICl~~f~-~~~~v~~l~~C~H~fH~~Ci~~ 142 (177)
.....|..|-..|. ....-..-..||.++|..|...
T Consensus 355 ~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~~ 391 (406)
T 2vrw_B 355 EETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGR 391 (406)
T ss_dssp SSCCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGGG
T ss_pred CCCCCCccccchhceeCCCCCCCCCCcCccchhhhhh
Confidence 35678999998875 2222122224999999999865
No 227
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=22.82 E-value=53 Score=18.95 Aligned_cols=14 Identities=21% Similarity=0.508 Sum_probs=9.1
Q ss_pred CcccCccccccccC
Q 037839 108 TATCCSICLADYRS 121 (177)
Q Consensus 108 ~~~~C~ICl~~f~~ 121 (177)
+...|++|...+..
T Consensus 9 ~iL~CP~c~~~L~~ 22 (56)
T 2kpi_A 9 EILACPACHAPLEE 22 (56)
T ss_dssp TSCCCSSSCSCEEE
T ss_pred hheeCCCCCCccee
Confidence 34568888776543
No 228
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=22.82 E-value=23 Score=21.64 Aligned_cols=15 Identities=27% Similarity=0.401 Sum_probs=10.8
Q ss_pred cCCCCcCCCCCCCCC
Q 037839 146 LHPTCPVCRTSPLPT 160 (177)
Q Consensus 146 ~~~~CP~CR~~~~~~ 160 (177)
.--.||.|+.++...
T Consensus 7 ~iL~CP~ck~~L~~~ 21 (70)
T 2js4_A 7 DILVCPVCKGRLEFQ 21 (70)
T ss_dssp CCCBCTTTCCBEEEE
T ss_pred hheECCCCCCcCEEe
Confidence 334699999987643
No 229
>3dl8_E Protein-export membrane protein SECG; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
Probab=22.65 E-value=1.1e+02 Score=20.22 Aligned_cols=34 Identities=15% Similarity=0.182 Sum_probs=21.4
Q ss_pred CCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHh
Q 037839 11 GFLGSSNIGGFGYGIGVSVGILILITTITLASYF 44 (177)
Q Consensus 11 ~~~~~~~~~~~~~~i~i~l~il~li~~i~l~~~~ 44 (177)
.+.+..+.+.+-..+.++++++++++.+.+.+..
T Consensus 40 slfG~rg~~~~L~K~T~ilailF~v~sl~L~~l~ 73 (107)
T 3dl8_E 40 SIFGVGGVETILTKATYWLGALFLVLALLLSVIP 73 (107)
T ss_dssp CCCCSSCCCCCTTHHHHHHHHHHHHHHHHHHCC-
T ss_pred cccccchHhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555667777777777777776666555443
No 230
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.52 E-value=54 Score=20.36 Aligned_cols=34 Identities=18% Similarity=0.378 Sum_probs=21.2
Q ss_pred CCcccCccccccccCC-CceeecCCCCCcccHhhH
Q 037839 107 STATCCSICLADYRSS-DMLRLLPDCSHLFHVKCV 140 (177)
Q Consensus 107 ~~~~~C~ICl~~f~~~-~~v~~l~~C~H~fH~~Ci 140 (177)
.....|+.|.+.|-.- +.-..-+.|.|..|.+|=
T Consensus 23 ~~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~Cr 57 (76)
T 2csz_A 23 YSDRTCARCQESLGRLSPKTNTCRGCNHLVCRDCR 57 (76)
T ss_dssp CCCCBCSSSCCBCSSSCTTTSEETTTTEECCTTSE
T ss_pred CCccchhhhCccccccccCCCcCcccChhhccccc
Confidence 4567899999998521 111122348888777763
No 231
>1pfi_A Major coat protein of PF1 virus; complex(viral coat protein/DNA), helical virus; HET: DC; 3.00A {Pseudomonas phage PF1} SCOP: h.1.4.1 PDB: 1ifn_A 1ifm_A* 1pjf_A 1ql1_A 1ql2_A 1zn5_A 2ifm_A 2ifn_A 2klv_A 2ksj_A 2xkm_A 3ifm_A 4ifm_A
Probab=21.51 E-value=95 Score=16.87 Aligned_cols=20 Identities=20% Similarity=0.285 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 037839 27 VSVGILILITTITLASYFCT 46 (177)
Q Consensus 27 i~l~il~li~~i~l~~~~~~ 46 (177)
.++|.++++.+.-+++.+.+
T Consensus 25 ~IVGaLvil~VAGLiysm~R 44 (46)
T 1pfi_A 25 YIVGALVILAVAGLIYSMLR 44 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 45555566555555554443
No 232
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=21.41 E-value=30 Score=20.65 Aligned_cols=45 Identities=24% Similarity=0.440 Sum_probs=26.7
Q ss_pred ccCccccccccCCCceeec-CCCCCcccHhhHHHH---Hh-----cCCCCcCCCC
Q 037839 110 TCCSICLADYRSSDMLRLL-PDCSHLFHVKCVDPW---LR-----LHPTCPVCRT 155 (177)
Q Consensus 110 ~~C~ICl~~f~~~~~v~~l-~~C~H~fH~~Ci~~W---l~-----~~~~CP~CR~ 155 (177)
..| ||-.....+..|.-- ..|...||..|+.-- .. .+..||.||.
T Consensus 11 v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 11 VRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp ECC-TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred EEe-ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 347 786655555444432 138888999998321 00 1357999873
No 233
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=21.02 E-value=1.4e+02 Score=19.24 Aligned_cols=40 Identities=8% Similarity=-0.005 Sum_probs=24.0
Q ss_pred CCCCcccCccccccccC-CCceeecCCCCCcccHhhHHHHHhc
Q 037839 105 KDSTATCCSICLADYRS-SDMLRLLPDCSHLFHVKCVDPWLRL 146 (177)
Q Consensus 105 ~~~~~~~C~ICl~~f~~-~~~v~~l~~C~H~fH~~Ci~~Wl~~ 146 (177)
+...-..|+.|-..+.. +.... .. =|.+||..|...-+..
T Consensus 26 wH~~CF~C~~C~~~L~~~g~~~~-~~-~g~~yC~~~y~~~f~~ 66 (114)
T 1j2o_A 26 WHEDCLSCDLCGCRLGEVGRRLY-YK-LGRKLCRRDYLRLGGS 66 (114)
T ss_dssp ECTTTCCCSSSCSCCCCSSSCCC-CB-TTBCCCHHHHHHHHTS
T ss_pred HHHhcCcccccCCchhcCCCeeE-EE-CCeeechHHHHHHhCc
Confidence 34456678888777753 22221 22 4677888888775553
No 234
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=20.76 E-value=1.1e+02 Score=16.37 Aligned_cols=8 Identities=25% Similarity=0.368 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 037839 27 VSVGILIL 34 (177)
Q Consensus 27 i~l~il~l 34 (177)
+..|++..
T Consensus 19 vmaGiIG~ 26 (40)
T 1afo_A 19 VMAGVIGT 26 (40)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 235
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=20.40 E-value=53 Score=21.62 Aligned_cols=25 Identities=12% Similarity=0.125 Sum_probs=11.2
Q ss_pred CCcccHhhHHHHHhcCCCCcCCCCCCC
Q 037839 132 SHLFHVKCVDPWLRLHPTCPVCRTSPL 158 (177)
Q Consensus 132 ~H~fH~~Ci~~Wl~~~~~CP~CR~~~~ 158 (177)
|..||..|...- -...|+.|..++.
T Consensus 50 g~~yC~~cy~~~--~~~~C~~C~~~I~ 74 (126)
T 2xqn_T 50 DKPVCKPCYVKN--HAVVCQGCHNAID 74 (126)
T ss_dssp TEEEEHHHHHHH--SCCBCTTTCSBCC
T ss_pred CEEechHHhCcC--cCccCcccCCcCC
Confidence 444555554331 1234555555544
Done!