BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037840
(464 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GGZ|A Chain A, Crystal Structure Of The Calmodulin-Like Protein (Hclp)
From Human Epithelial Cells
Length = 148
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 13/85 (15%)
Query: 275 GDGALTSR---IVARIFEQAP-----RKFTCKVARHMNYE-DFVYFLI----SVEDKSSE 321
GDG +T+R V R Q P R ++ R N DF FL ++D +E
Sbjct: 23 GDGCITTRELGTVMRSLGQNPTEAELRDMMSEIDRDGNGTVDFPEFLGMMARKMKDTDNE 82
Query: 322 PSVEYWFKLLDLDGNGKLTPGEMRY 346
+ F++ D DGNG ++ E+R+
Sbjct: 83 EEIREAFRVFDKDGNGFVSAAELRH 107
>pdb|3U0K|A Chain A, Crystal Structure Of The Genetically Encoded Calcium
Indicator Rcamp
Length = 440
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 13/93 (13%)
Query: 275 GDGALTSRIVARIFEQAPRKFTCKVARHMNYE---------DFVYFLI----SVEDKSSE 321
GDG +T++ + + + T + M E DF FLI ++D SE
Sbjct: 315 GDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTIDFPEFLIMMARKMKDTDSE 374
Query: 322 PSVEYWFKLLDLDGNGKLTPGEMRYFYEDHAKK 354
+ F++ D DGNG ++ E+R+ + +K
Sbjct: 375 EEIREAFRVFDKDGNGYISAAELRHVMTNLGEK 407
>pdb|1BJF|A Chain A, Crystal Structure Of Recombinant Bovine Neurocalcin Delta
At 2.4 Angstroms
pdb|1BJF|B Chain B, Crystal Structure Of Recombinant Bovine Neurocalcin Delta
At 2.4 Angstroms
Length = 193
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 7/76 (9%)
Query: 269 GDLMTYGDGALTSRIVARIFEQAPRKFTCKVARHMNYEDFVYFLISVEDKSSEPSVEYWF 328
G+ YGD S+ +F R F +++ +F+ L E +++ F
Sbjct: 53 GNFFPYGD---ASKFAEHVF----RTFDANGDGTIDFREFIIALSVTSRGKLEQKLKWAF 105
Query: 329 KLLDLDGNGKLTPGEM 344
+ DLDGNG ++ EM
Sbjct: 106 SMYDLDGNGYISKAEM 121
>pdb|4GOW|D Chain D, Crystal Structure Of Ca2+CAM:KV7.4 (KCNQ4) B HELIX COMPLEX
Length = 144
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 13/93 (13%)
Query: 275 GDGALTSRIVARIFEQAPRKFTCKVARHMNYE---------DFVYFLI----SVEDKSSE 321
GDG +T++ + + + T + M E DF FL ++D SE
Sbjct: 21 GDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSE 80
Query: 322 PSVEYWFKLLDLDGNGKLTPGEMRYFYEDHAKK 354
+ F++ D DGNG ++ E+R+ + +K
Sbjct: 81 EEIREAFRVFDKDGNGYISAAELRHVMTNLGEK 113
>pdb|1XFU|O Chain O, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|P Chain P, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|Q Chain Q, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|R Chain R, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|S Chain S, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|T Chain T, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFV|O Chain O, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|P Chain P, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|Q Chain Q, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|R Chain R, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|S Chain S, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|T Chain T, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFW|O Chain O, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|P Chain P, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|Q Chain Q, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|R Chain R, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|S Chain S, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|T Chain T, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFY|O Chain O, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|P Chain P, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|Q Chain Q, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|R Chain R, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|S Chain S, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|T Chain T, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFZ|O Chain O, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|P Chain P, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|Q Chain Q, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|R Chain R, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|S Chain S, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|T Chain T, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
Length = 149
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 13/93 (13%)
Query: 275 GDGALTSRIVARIFEQAPRKFTCKVARHMNYE---------DFVYFLI----SVEDKSSE 321
GDG +T++ + + + T + M E DF FL ++D SE
Sbjct: 24 GDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSE 83
Query: 322 PSVEYWFKLLDLDGNGKLTPGEMRYFYEDHAKK 354
+ F++ D DGNG ++ E+R+ + +K
Sbjct: 84 EEIREAFRVFDKDGNGYISAAELRHVMTNLGEK 116
>pdb|2VAY|A Chain A, Calmodulin Complexed With Cav1.1 Iq Peptide
pdb|2LGF|A Chain A, Solution Structure Of Ca2+CALMODULIN COMPLEXED WITH A
PEPTIDE Representing The Calmodulin-Binding Domain Of
L-Selectin
Length = 146
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 13/93 (13%)
Query: 275 GDGALTSRIVARIFEQAPRKFTCKVARHMNYE---------DFVYFLI----SVEDKSSE 321
GDG +T++ + + + T + M E DF FL ++D SE
Sbjct: 21 GDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSE 80
Query: 322 PSVEYWFKLLDLDGNGKLTPGEMRYFYEDHAKK 354
+ F++ D DGNG ++ E+R+ + +K
Sbjct: 81 EEIREAFRVFDKDGNGYISAAELRHVMTNLGEK 113
>pdb|2IX7|A Chain A, Structure Of Apo-Calmodulin Bound To Unconventional Myosin
V
pdb|2IX7|B Chain B, Structure Of Apo-Calmodulin Bound To Unconventional Myosin
V
Length = 145
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 13/93 (13%)
Query: 275 GDGALTSRIVARIFEQAPRKFTCKVARHMNYE---------DFVYFLI----SVEDKSSE 321
GDG +T++ + + + T + M E DF FL ++D SE
Sbjct: 22 GDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSE 81
Query: 322 PSVEYWFKLLDLDGNGKLTPGEMRYFYEDHAKK 354
+ F++ D DGNG ++ E+R+ + +K
Sbjct: 82 EEIREAFRVFDKDGNGYISAAELRHVMTNLGEK 114
>pdb|2F2O|A Chain A, Structure Of Calmodulin Bound To A Calcineurin Peptide: A
New Way Of Making An Old Binding Mode
pdb|2F2O|B Chain B, Structure Of Calmodulin Bound To A Calcineurin Peptide: A
New Way Of Making An Old Binding Mode
pdb|2F2P|A Chain A, Structure Of Calmodulin Bound To A Calcineurin Peptide: A
New Way Of Making An Old Binding Mode
pdb|2F2P|B Chain B, Structure Of Calmodulin Bound To A Calcineurin Peptide: A
New Way Of Making An Old Binding Mode
Length = 179
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 13/93 (13%)
Query: 275 GDGALTSRIVARIFEQAPRKFTCKVARHMNYE---------DFVYFLI----SVEDKSSE 321
GDG +T++ + + + T + M E DF FL ++D SE
Sbjct: 24 GDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSE 83
Query: 322 PSVEYWFKLLDLDGNGKLTPGEMRYFYEDHAKK 354
+ F++ D DGNG ++ E+R+ + +K
Sbjct: 84 EEIREAFRVFDKDGNGYISAAELRHVMTNLGEK 116
>pdb|2BE6|A Chain A, 2.0 A Crystal Structure Of The Cav1.2 Iq Domain-CaCAM
COMPLEX
pdb|2BE6|B Chain B, 2.0 A Crystal Structure Of The Cav1.2 Iq Domain-CaCAM
COMPLEX
pdb|2BE6|C Chain C, 2.0 A Crystal Structure Of The Cav1.2 Iq Domain-CaCAM
COMPLEX
pdb|1ZUZ|A Chain A, Calmodulin In Complex With A Mutant Peptide From Human
Drp-1 Kinase
Length = 150
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 13/93 (13%)
Query: 275 GDGALTSRIVARIFEQAPRKFTCKVARHMNYE---------DFVYFLI----SVEDKSSE 321
GDG +T++ + + + T + M E DF FL ++D SE
Sbjct: 24 GDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSE 83
Query: 322 PSVEYWFKLLDLDGNGKLTPGEMRYFYEDHAKK 354
+ F++ D DGNG ++ E+R+ + +K
Sbjct: 84 EEIREAFRVFDKDGNGYISAAELRHVMTNLGEK 116
>pdb|1IQ5|A Chain A, CalmodulinNEMATODE CA2+CALMODULIN DEPENDENT KINASE KINASE
Fragment
pdb|1LVC|D Chain D, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
2' Deoxy, 3' Anthraniloyl Atp
pdb|1LVC|E Chain E, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
2' Deoxy, 3' Anthraniloyl Atp
pdb|1LVC|F Chain F, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
2' Deoxy, 3' Anthraniloyl Atp
pdb|2BKI|B Chain B, Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal Structure
pdb|2BKI|D Chain D, Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal Structure
pdb|1WRZ|A Chain A, Calmodulin Complexed With A Peptide From A Human
Death-Associated Protein Kinase
pdb|2V01|A Chain A, Recombinant Vertebrate Calmodulin Complexed With Pb
pdb|2V02|A Chain A, Recombinant Vertebrate Calmodulin Complexed With Ba
pdb|2R28|A Chain A, The Complex Structure Of Calmodulin Bound To A Calcineurin
Peptide
pdb|2R28|B Chain B, The Complex Structure Of Calmodulin Bound To A Calcineurin
Peptide
pdb|2W73|A Chain A, High-Resolution Structure Of The Complex Between
Calmodulin And A Peptide From Calcineurin A
pdb|2W73|B Chain B, High-Resolution Structure Of The Complex Between
Calmodulin And A Peptide From Calcineurin A
pdb|2W73|E Chain E, High-Resolution Structure Of The Complex Between
Calmodulin And A Peptide From Calcineurin A
pdb|2W73|F Chain F, High-Resolution Structure Of The Complex Between
Calmodulin And A Peptide From Calcineurin A
pdb|3HR4|B Chain B, Human Inos Reductase And Calmodulin Complex
pdb|3HR4|D Chain D, Human Inos Reductase And Calmodulin Complex
pdb|3HR4|F Chain F, Human Inos Reductase And Calmodulin Complex
pdb|3HR4|H Chain H, Human Inos Reductase And Calmodulin Complex
pdb|3OXQ|A Chain A, Crystal Structure Of Ca2+CAM-Cav1.2 Pre-IqIQ DOMAIN
COMPLEX
pdb|3OXQ|B Chain B, Crystal Structure Of Ca2+CAM-Cav1.2 Pre-IqIQ DOMAIN
COMPLEX
pdb|3OXQ|C Chain C, Crystal Structure Of Ca2+CAM-Cav1.2 Pre-IqIQ DOMAIN
COMPLEX
pdb|3OXQ|D Chain D, Crystal Structure Of Ca2+CAM-Cav1.2 Pre-IqIQ DOMAIN
COMPLEX
pdb|2Y4V|A Chain A, Crystal Structure Of Human Calmodulin In Complex With A
Dap Kinase-1 Mutant (W305y) Peptide
pdb|3SJQ|A Chain A, Crystal Structure Of A Small Conductance Potassium Channel
Splice Variant Complexed With Calcium-Calmodulin
pdb|3SJQ|B Chain B, Crystal Structure Of A Small Conductance Potassium Channel
Splice Variant Complexed With Calcium-Calmodulin
pdb|4DCK|B Chain B, Crystal Structure Of The C-Terminus Of Voltage-Gated
Sodium Channel In Complex With Fgf13 And Cam
pdb|3SUI|A Chain A, Crystal Structure Of Ca2+-Calmodulin In Complex With A
Trpv1 C- Terminal Peptide
pdb|4G27|R Chain R, Calcium-Calmodulin Complexed With The Calmodulin Binding
Domain From A Small Conductance Potassium Channel Splice
Variant And Phenylurea
pdb|4G28|R Chain R, Calcium-Calmodulin Complexed With The Calmodulin Binding
Domain From A Small Conductance Potassium Channel Splice
Variant And Ebio-1
Length = 149
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 13/93 (13%)
Query: 275 GDGALTSRIVARIFEQAPRKFTCKVARHMNYE---------DFVYFLI----SVEDKSSE 321
GDG +T++ + + + T + M E DF FL ++D SE
Sbjct: 24 GDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSE 83
Query: 322 PSVEYWFKLLDLDGNGKLTPGEMRYFYEDHAKK 354
+ F++ D DGNG ++ E+R+ + +K
Sbjct: 84 EEIREAFRVFDKDGNGYISAAELRHVMTNLGEK 116
>pdb|1CDL|A Chain A, Target Enzyme Recognition By Calmodulin: 2.4 Angstroms
Structure Of A Calmodulin-Peptide Complex
pdb|1CDL|B Chain B, Target Enzyme Recognition By Calmodulin: 2.4 Angstroms
Structure Of A Calmodulin-Peptide Complex
pdb|1CDL|C Chain C, Target Enzyme Recognition By Calmodulin: 2.4 Angstroms
Structure Of A Calmodulin-Peptide Complex
pdb|1CDL|D Chain D, Target Enzyme Recognition By Calmodulin: 2.4 Angstroms
Structure Of A Calmodulin-Peptide Complex
pdb|1PK0|D Chain D, Crystal Structure Of The Ef3-Cam Complexed With Pmeapp
pdb|1PK0|E Chain E, Crystal Structure Of The Ef3-Cam Complexed With Pmeapp
pdb|1PK0|F Chain F, Crystal Structure Of The Ef3-Cam Complexed With Pmeapp
pdb|3GP2|A Chain A, Calmodulin Bound To Peptide From Calmodulin Kinase Ii
(Camkii)
Length = 147
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 13/93 (13%)
Query: 275 GDGALTSRIVARIFEQAPRKFTCKVARHMNYE---------DFVYFLI----SVEDKSSE 321
GDG +T++ + + + T + M E DF FL ++D SE
Sbjct: 23 GDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSE 82
Query: 322 PSVEYWFKLLDLDGNGKLTPGEMRYFYEDHAKK 354
+ F++ D DGNG ++ E+R+ + +K
Sbjct: 83 EEIREAFRVFDKDGNGYISAAELRHVMTNLGEK 115
>pdb|2WEL|D Chain D, Crystal Structure Of Su6656-Bound CalciumCALMODULIN-
Dependent Protein Kinase Ii Delta In Complex With
Calmodulin
Length = 150
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 13/93 (13%)
Query: 275 GDGALTSRIVARIFEQAPRKFTCKVARHMNYE---------DFVYFLI----SVEDKSSE 321
GDG +T++ + + + T + M E DF FL ++D SE
Sbjct: 25 GDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSE 84
Query: 322 PSVEYWFKLLDLDGNGKLTPGEMRYFYEDHAKK 354
+ F++ D DGNG ++ E+R+ + +K
Sbjct: 85 EEIREAFRVFDKDGNGYISAAELRHVMTNLGEK 117
>pdb|1CDM|A Chain A, Modulation Of Calmodulin Plasticity In Molecular
Recognition On The Basis Of X-Ray Structures
Length = 144
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 13/93 (13%)
Query: 275 GDGALTSRIVARIFEQAPRKFTCKVARHMNYE---------DFVYFLI----SVEDKSSE 321
GDG +T++ + + + T + M E DF FL ++D SE
Sbjct: 20 GDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSE 79
Query: 322 PSVEYWFKLLDLDGNGKLTPGEMRYFYEDHAKK 354
+ F++ D DGNG ++ E+R+ + +K
Sbjct: 80 EEIREAFRVFDKDGNGYISAAELRHVMTNLGEK 112
>pdb|3EWT|A Chain A, Crystal Structure Of Calmodulin Complexed With A Peptide
pdb|3EWV|A Chain A, Crystal Structure Of Calmodulin Complexed With A Peptide
Length = 154
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 13/93 (13%)
Query: 275 GDGALTSRIVARIFEQAPRKFTCKVARHMNYE---------DFVYFLI----SVEDKSSE 321
GDG +T++ + + + T + M E DF FL ++D SE
Sbjct: 29 GDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSE 88
Query: 322 PSVEYWFKLLDLDGNGKLTPGEMRYFYEDHAKK 354
+ F++ D DGNG ++ E+R+ + +K
Sbjct: 89 EEIREAFRVFDKDGNGYISAAELRHVMTNLGEK 121
>pdb|1CM1|A Chain A, Motions Of Calmodulin-Single-Conformer Refinement
pdb|1CM4|A Chain A, Motions Of Calmodulin-four-conformer Refinement
pdb|1CKK|A Chain A, CalmodulinRAT CA2+CALMODULIN DEPENDENT PROTEIN KINASE
Fragment
pdb|1CFF|A Chain A, Nmr Solution Structure Of A Complex Of Calmodulin With A
Binding Peptide Of The Ca2+-Pump
pdb|1QIV|A Chain A, Calmodulin Complexed With
N-(3,3,-Diphenylpropyl)-N'-[1-R-(
3,4-Bis-Butoxyphenyl)-Ethyl]-Propylenediamine (Dpd), 1:2
Complex
pdb|1QIW|A Chain A, Calmodulin Complexed With
N-(3,3,-Diphenylpropyl)-N'-[1-R-(
3,4-Bis-Butoxyphenyl)-Ethyl]-Propylenediamine (Dpd)
pdb|1QIW|B Chain B, Calmodulin Complexed With
N-(3,3,-Diphenylpropyl)-N'-[1-R-(
3,4-Bis-Butoxyphenyl)-Ethyl]-Propylenediamine (Dpd)
pdb|1G4Y|R Chain R, 1.60 A Crystal Structure Of The Gating Domain From Small
Conductance Potassium Channel Complexed With
Calcium-Calmodulin
pdb|1K90|D Chain D, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
3' Deoxy-Atp
pdb|1K90|E Chain E, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
3' Deoxy-Atp
pdb|1K90|F Chain F, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
3' Deoxy-Atp
pdb|1IWQ|A Chain A, Crystal Structure Of Marcks Calmodulin Binding Domain
Peptide Complexed With Ca2+CALMODULIN
pdb|1NWD|A Chain A, Solution Structure Of Ca2+CALMODULIN BOUND TO THE C-
Terminal Domain Of Petunia Glutamate Decarboxylase
pdb|1L7Z|A Chain A, Crystal Structure Of Ca2+/calmodulin Complexed With
Myristoylated Cap-23/nap-22 Peptide
pdb|1S26|D Chain D, Structure Of Anthrax Edema Factor-calmodulin-alpha,beta-
Methyleneadenosine 5'-triphosphate Complex Reveals An
Alternative Mode Of Atp Binding To The Catalytic Site
pdb|1S26|E Chain E, Structure Of Anthrax Edema Factor-calmodulin-alpha,beta-
Methyleneadenosine 5'-triphosphate Complex Reveals An
Alternative Mode Of Atp Binding To The Catalytic Site
pdb|1S26|F Chain F, Structure Of Anthrax Edema Factor-calmodulin-alpha,beta-
Methyleneadenosine 5'-triphosphate Complex Reveals An
Alternative Mode Of Atp Binding To The Catalytic Site
pdb|1SK6|D Chain D, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin,
3',5' Cyclic Amp (Camp), And Pyrophosphate
pdb|1SK6|E Chain E, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin,
3',5' Cyclic Amp (Camp), And Pyrophosphate
pdb|1SK6|F Chain F, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin,
3',5' Cyclic Amp (Camp), And Pyrophosphate
pdb|1QX5|D Chain D, Crystal Structure Of Apocalmodulin
pdb|1QX5|I Chain I, Crystal Structure Of Apocalmodulin
pdb|1QX5|B Chain B, Crystal Structure Of Apocalmodulin
pdb|1QX5|J Chain J, Crystal Structure Of Apocalmodulin
pdb|1QX5|K Chain K, Crystal Structure Of Apocalmodulin
pdb|1QX5|T Chain T, Crystal Structure Of Apocalmodulin
pdb|1QX5|R Chain R, Crystal Structure Of Apocalmodulin
pdb|1QX5|Y Chain Y, Crystal Structure Of Apocalmodulin
pdb|1XA5|A Chain A, Structure Of Calmodulin In Complex With Kar-2, A Bis-Indol
Alkaloid
pdb|1SY9|A Chain A, Structure Of Calmodulin Complexed With A Fragment Of The
Olfactory Cng Channel
pdb|2F3Y|A Chain A, CalmodulinIQ DOMAIN COMPLEX
pdb|2F3Z|A Chain A, CalmodulinIQ-Aa Domain Complex
pdb|1X02|A Chain A, Solution Structure Of Stereo Array Isotope Labeled (Sail)
Calmodulin
pdb|2DFS|B Chain B, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|C Chain C, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|D Chain D, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|E Chain E, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|F Chain F, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|G Chain G, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|N Chain N, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|O Chain O, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|P Chain P, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|Q Chain Q, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|R Chain R, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|S Chain S, 3-D Structure Of Myosin-V Inhibited State
pdb|1YR5|A Chain A, 1.7-A Structure Of Calmodulin Bound To A Peptide From Dap
Kinase
pdb|2FOT|A Chain A, Crystal Structure Of The Complex Between Calmodulin And
Alphaii-Spectrin
pdb|2BCX|A Chain A, Crystal Structure Of Calmodulin In Complex With A
Ryanodine Receptor Peptide
pdb|1A29|A Chain A, Calmodulin Complexed With Trifluoperazine (1:2 Complex)
pdb|1CFC|A Chain A, Calcium-Free Calmodulin
pdb|1CFD|A Chain A, Calcium-Free Calmodulin
pdb|1CLL|A Chain A, Calmodulin Structure Refined At 1.7 Angstroms Resolution
pdb|1CTR|A Chain A, Drug Binding By Calmodulin: Crystal Structure Of A
Calmodulin-Trifluoperazine Complex
pdb|1LIN|A Chain A, Calmodulin Complexed With Trifluoperazine (1:4 Complex)
pdb|1MUX|A Chain A, Solution Nmr Structure Of CalmodulinW-7 Complex: The Basis
Of Diversity In Molecular Recognition, 30 Structures
pdb|2HQW|A Chain A, Crystal Structure Of Ca2+CALMODULIN BOUND TO NMDA RECEPTOR
NR1C1 Peptide
pdb|2O5G|A Chain A, Calmodulin-Smooth Muscle Light Chain Kinase Peptide
Complex
pdb|2O60|A Chain A, Calmodulin Bound To Peptide From Neuronal Nitric Oxide
Synthase
pdb|3BXK|A Chain A, Crystal Structure Of The PQ-Type Calcium Channel (Cav2.1)
Iq Domain And Ca2+calmodulin Complex
pdb|3BXK|C Chain C, Crystal Structure Of The PQ-Type Calcium Channel (Cav2.1)
Iq Domain And Ca2+calmodulin Complex
pdb|3BXL|A Chain A, Crystal Structure Of The R-Type Calcium Channel (Cav2.3)
Iq Domain And Ca2+calmodulin Complex
pdb|2K0E|A Chain A, A Coupled Equilibrium Shift Mechanism In Calmodulin-
Mediated Signal Transduction
pdb|2K0F|A Chain A, Calmodulin Complexed With Calmodulin-Binding Peptide From
Smooth Muscle Myosin Light Chain Kinase
pdb|3DVE|A Chain A, Crystal Structure Of Ca2+CAM-Cav2.2 Iq Domain Complex
pdb|3DVJ|A Chain A, Crystal Structure Of Ca2+CAM-Cav2.2 Iq Domain (Without
Cloning Artifact, Hm To Tv) Complex
pdb|3DVK|A Chain A, Crystal Structure Of Ca2+CAM-Cav2.3 Iq Domain Complex
pdb|3DVM|A Chain A, Crystal Structure Of Ca2+CAM-Cav2.1 Iq Domain Complex
pdb|2JZI|A Chain A, Structure Of Calmodulin Complexed With The Calmodulin
Binding Domain Of Calcineurin
pdb|3BYA|A Chain A, Structure Of A Calmodulin Complex
pdb|3G43|A Chain A, Crystal Structure Of The Calmodulin-Bound Cav1.2
C-Terminal Regulatory Domain Dimer
pdb|3G43|B Chain B, Crystal Structure Of The Calmodulin-Bound Cav1.2
C-Terminal Regulatory Domain Dimer
pdb|3G43|C Chain C, Crystal Structure Of The Calmodulin-Bound Cav1.2
C-Terminal Regulatory Domain Dimer
pdb|3G43|D Chain D, Crystal Structure Of The Calmodulin-Bound Cav1.2
C-Terminal Regulatory Domain Dimer
pdb|2KNE|A Chain A, Calmodulin Wraps Around Its Binding Domain In The Plasma
Membrane Ca2+ Pump Anchored By A Novel 18-1 Motif
pdb|2KDU|A Chain A, Structural Basis Of The Munc13-1CA2+-Calmodulin
Interaction: A Novel 1-26 Calmodulin Binding Motif With
A Bipartite Binding Mode
pdb|2X0G|B Chain B, X-ray Structure Of A Dap-kinase Calmodulin Complex
pdb|3GOF|A Chain A, Calmodulin Bound To Peptide From Macrophage Nitric Oxide
Synthase
pdb|3GOF|B Chain B, Calmodulin Bound To Peptide From Macrophage Nitric Oxide
Synthase
pdb|3IF7|A Chain A, Structure Of Calmodulin Complexed With Its First
Endogenous Inhibitor, Sphingosylphosphorylcholine
pdb|2L53|A Chain A, Solution Nmr Structure Of Apo-Calmodulin In Complex With
The Iq Motif Of Human Cardiac Sodium Channel Nav1.5
pdb|2L7L|A Chain A, Solution Structure Of Ca2+CALMODULIN COMPLEXED WITH A
PEPTIDE Representing The Calmodulin-Binding Domain Of
Calmodulin Kinase I
pdb|2LL6|A Chain A, Solution Nmr Structure Of Cam Bound To Inos Cam Binding
Domain Peptide
pdb|2LL7|A Chain A, Solution Nmr Structure Of Cam Bound To The Enos Cam
Binding Domain Peptide
pdb|4EHQ|A Chain A, Crystal Structure Of Calmodulin Binding Domain Of Orai1 In
Complex With Ca2+CALMODULIN DISPLAYS A UNIQUE BINDING
MODE
Length = 148
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 13/93 (13%)
Query: 275 GDGALTSRIVARIFEQAPRKFTCKVARHMNYE---------DFVYFLI----SVEDKSSE 321
GDG +T++ + + + T + M E DF FL ++D SE
Sbjct: 23 GDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSE 82
Query: 322 PSVEYWFKLLDLDGNGKLTPGEMRYFYEDHAKK 354
+ F++ D DGNG ++ E+R+ + +K
Sbjct: 83 EEIREAFRVFDKDGNGYISAAELRHVMTNLGEK 115
>pdb|1DMO|A Chain A, Calmodulin, Nmr, 30 Structures
pdb|3CLN|A Chain A, Structure Of Calmodulin Refined At 2.2 Angstroms
Resolution
Length = 148
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 13/93 (13%)
Query: 275 GDGALTSRIVARIFEQAPRKFTCKVARHMNYE---------DFVYFLI----SVEDKSSE 321
GDG +T++ + + + T + M E DF FL ++D SE
Sbjct: 23 GDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSE 82
Query: 322 PSVEYWFKLLDLDGNGKLTPGEMRYFYEDHAKK 354
+ F++ D DGNG ++ E+R+ + +K
Sbjct: 83 EEIREAFRVFDKDGNGYISAAELRHVMTNLGEK 115
>pdb|4DJC|A Chain A, 1.35 A Crystal Structure Of The Nav1.5 Diii-Iv-CaCAM
COMPLEX
Length = 152
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 13/93 (13%)
Query: 275 GDGALTSRIVARIFEQAPRKFTCKVARHMNYE---------DFVYFLI----SVEDKSSE 321
GDG +T++ + + + T + M E DF FL ++D SE
Sbjct: 27 GDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSE 86
Query: 322 PSVEYWFKLLDLDGNGKLTPGEMRYFYEDHAKK 354
+ F++ D DGNG ++ E+R+ + +K
Sbjct: 87 EEIREAFRVFDKDGNGYISAAELRHVMTNLGEK 119
>pdb|2K0J|A Chain A, Solution Structure Of Cam Complexed To Drp1p
pdb|2K61|A Chain A, Solution Structure Of Cam Complexed To Dapk Peptide
Length = 148
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 13/93 (13%)
Query: 275 GDGALTSRIVARIFEQAPRKFTCKVARHMNYE---------DFVYFLI----SVEDKSSE 321
GDG +T++ + + + T + M E DF FL ++D SE
Sbjct: 23 GDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTIDFPEFLTMMARKMKDTDSE 82
Query: 322 PSVEYWFKLLDLDGNGKLTPGEMRYFYEDHAKK 354
+ F++ D DGNG ++ E+R+ + +K
Sbjct: 83 EEIREAFRVFDKDGNGYISAAELRHVMTNLGEK 115
>pdb|2YGG|B Chain B, Complex Of Cambr And Cam
Length = 150
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 13/93 (13%)
Query: 275 GDGALTSRIVARIFEQAPRKFTCKVARHMNYE---------DFVYFLI----SVEDKSSE 321
GDG +T++ + + + T + M E DF FL ++D SE
Sbjct: 24 GDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSE 83
Query: 322 PSVEYWFKLLDLDGNGKLTPGEMRYFYEDHAKK 354
+ F++ D DGNG ++ E+R+ + +K
Sbjct: 84 EEIREAFRVFDKDGNGYISAAELRHVMTNLGEK 116
>pdb|1K93|D Chain D, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin
pdb|1K93|E Chain E, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin
pdb|1K93|F Chain F, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin
Length = 144
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 13/93 (13%)
Query: 275 GDGALTSRIVARIFEQAPRKFTCKVARHMNYE---------DFVYFLI----SVEDKSSE 321
GDG +T++ + + + T + M E DF FL ++D SE
Sbjct: 19 GDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSE 78
Query: 322 PSVEYWFKLLDLDGNGKLTPGEMRYFYEDHAKK 354
+ F++ D DGNG ++ E+R+ + +K
Sbjct: 79 EEIREAFRVFDKDGNGYISAAELRHVMTNLGEK 111
>pdb|1Y0V|H Chain H, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|I Chain I, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|J Chain J, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|K Chain K, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|L Chain L, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|M Chain M, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
Length = 146
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 13/93 (13%)
Query: 275 GDGALTSRIVARIFEQAPRKFTCKVARHMNYE---------DFVYFLI----SVEDKSSE 321
GDG +T++ + + + T + M E DF FL ++D SE
Sbjct: 21 GDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSE 80
Query: 322 PSVEYWFKLLDLDGNGKLTPGEMRYFYEDHAKK 354
+ F++ D DGNG ++ E+R+ + +K
Sbjct: 81 EEIREAFRVFDKDGNGYISAAELRHVMTNLGEK 113
>pdb|1JFJ|A Chain A, Nmr Solution Structure Of An Ef-Hand Calcium Binding
Protein From Entamoeba Histolytica
pdb|1JFK|A Chain A, Minimum Energy Representative Structure Of A Calcium Bound
Ef-hand Protein From Entamoeba Histolytica
Length = 134
Score = 32.7 bits (73), Expect = 0.50, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 25/34 (73%)
Query: 328 FKLLDLDGNGKLTPGEMRYFYEDHAKKPVSFEMI 361
+KL+D+DG+GKLT E+ F++ H + V+ +++
Sbjct: 81 YKLMDVDGDGKLTKEEVTSFFKKHGIEKVAEQVM 114
>pdb|2NXQ|A Chain A, Crystal Structure Of Calcium Binding Protein 1 From
Entamoeba Histolytica: A Novel Arrangement Of Ef Hand
Motifs
pdb|2NXQ|B Chain B, Crystal Structure Of Calcium Binding Protein 1 From
Entamoeba Histolytica: A Novel Arrangement Of Ef Hand
Motifs
pdb|3PX1|A Chain A, Structure Of Calcium Binding Protein-1 From Entamoeba
Histolytica In Complex With Strontium
pdb|3PX1|B Chain B, Structure Of Calcium Binding Protein-1 From Entamoeba
Histolytica In Complex With Strontium
pdb|3QJK|A Chain A, Structure Of Calcium Binding Protein-1 From Entamoeba
Histolytica In Complex With Lead
pdb|3QJK|B Chain B, Structure Of Calcium Binding Protein-1 From Entamoeba
Histolytica In Complex With Lead
pdb|3ULG|A Chain A, Crystal Structure Of Calcium-Binding Protein-1 From
Entamoeba Histolytica In Complex With Barium
pdb|3ULG|B Chain B, Crystal Structure Of Calcium-Binding Protein-1 From
Entamoeba Histolytica In Complex With Barium
Length = 134
Score = 32.7 bits (73), Expect = 0.50, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 25/34 (73%)
Query: 328 FKLLDLDGNGKLTPGEMRYFYEDHAKKPVSFEMI 361
+KL+D+DG+GKLT E+ F++ H + V+ +++
Sbjct: 81 YKLMDVDGDGKLTKEEVTSFFKKHGIEKVAEQVM 114
>pdb|2EXR|A Chain A, X-Ray Structure Of Cytokinin OxidaseDEHYDROGENASE (CKX)
FROM Arabidopsis Thaliana At5g21482
pdb|2Q4W|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Cytokinin OxidaseDEHYDROGENASE (CKX) FROM ARABIDOPSIS
THALIANA AT5G21482
Length = 524
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 9/83 (10%)
Query: 375 EYITLRDLKRSDLSRIVFEVLSNRGKLLAFDDRVRFPLPRRRGHQHPDLIEWLRFVDKEF 434
+ +T +++ S+L F VL G+ R R L PD + W+R V EF
Sbjct: 202 DVVTCSEIENSEL---FFSVLGGLGQF-GIITRARVLL-----QPAPDXVRWIRVVYTEF 252
Query: 435 ESMLIDAEFISSSEDEPMEDWGE 457
+ DAE++ S ++E D+ E
Sbjct: 253 DEFTQDAEWLVSQKNESSFDYVE 275
>pdb|1OOJ|A Chain A, Structural Genomics Of Caenorhabditis Elegans : Calmodulin
Length = 149
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 13/93 (13%)
Query: 275 GDGALTSRIVARIFEQAPRKFTCKVARHMNYE---------DFVYFLI----SVEDKSSE 321
GDG +T++ + + + T + M E DF FL ++D SE
Sbjct: 24 GDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSE 83
Query: 322 PSVEYWFKLLDLDGNGKLTPGEMRYFYEDHAKK 354
+ F++ D DGNG ++ E+R+ + +K
Sbjct: 84 EEIREAFRVFDKDGNGFISAAELRHVMTNLGEK 116
>pdb|2BKH|B Chain B, Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Structure
pdb|2VAS|B Chain B, Myosin Vi (Md-Insert2-Cam, Delta-Insert1) Post-Rigor State
pdb|3GN4|B Chain B, Myosin Lever Arm
pdb|3GN4|D Chain D, Myosin Lever Arm
pdb|3GN4|F Chain F, Myosin Lever Arm
pdb|3GN4|H Chain H, Myosin Lever Arm
pdb|3L9I|C Chain C, Myosin Vi Nucleotide-Free (Mdinsert2) L310g Mutant Crystal
Structure
pdb|2X51|B Chain B, M6 Delta Insert1
pdb|4ANJ|B Chain B, Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke State
(Mg.Adp.Alf4)
pdb|4DBP|C Chain C, Myosin Vi Nucleotide-free (mdinsert2) D179y Crystal
Structure
pdb|4DBQ|B Chain B, Myosin Vi D179y (md-insert2-cam, Delta-insert1) Post-rigor
State
Length = 149
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 13/93 (13%)
Query: 275 GDGALTSRIVARIFEQAPRKFTCKVARHMNYE---------DFVYFLI----SVEDKSSE 321
GDG +T++ + + + T + M E DF FL ++D SE
Sbjct: 24 GDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSE 83
Query: 322 PSVEYWFKLLDLDGNGKLTPGEMRYFYEDHAKK 354
+ F++ D DGNG ++ E+R+ + +K
Sbjct: 84 EEIREAFRVFDKDGNGFISAAELRHVMTNLGEK 116
>pdb|2I18|A Chain A, The Refined Structure Of C-Terminal Domain Of An Ef-Hand
Calcium Binding Protein From Entamoeba Histolytica
Length = 64
Score = 32.3 bits (72), Expect = 0.56, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 25/34 (73%)
Query: 328 FKLLDLDGNGKLTPGEMRYFYEDHAKKPVSFEMI 361
+KL+D+DG+GKLT E+ F++ H + V+ +++
Sbjct: 11 YKLMDVDGDGKLTKEEVTSFFKKHGIEKVAEQVM 44
>pdb|2VB6|B Chain B, Myosin Vi (Md-Insert2-Cam, Delta Insert1) Post-Rigor State
( Crystal Form 2)
Length = 149
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 13/93 (13%)
Query: 275 GDGALTSRIVARIFEQAPRKFTCKVARHMNYE---------DFVYFLI----SVEDKSSE 321
GDG +T++ + + + T + M E DF FL ++D SE
Sbjct: 24 GDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSE 83
Query: 322 PSVEYWFKLLDLDGNGKLTPGEMRYFYEDHAKK 354
+ F++ D DGNG ++ E+R+ + +K
Sbjct: 84 EEIREAFRVFDKDGNGFISAAELRHVMTNLGEK 116
>pdb|3O78|A Chain A, The Structure Of Ca2+ Sensor (Case-12)
pdb|3O78|B Chain B, The Structure Of Ca2+ Sensor (Case-12)
Length = 415
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 13/93 (13%)
Query: 275 GDGALTSRIVARIFEQAPRKFTCKVARHMNYE---------DFVYFLI----SVEDKSSE 321
GDG +T++ + + + T + M E DF FL ++D SE
Sbjct: 290 GDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSE 349
Query: 322 PSVEYWFKLLDLDGNGKLTPGEMRYFYEDHAKK 354
+ F++ D DGNG ++ E+R+ + +K
Sbjct: 350 EEIREAFRVFDKDGNGYISAAELRHVMTNLGEK 382
>pdb|3O77|A Chain A, The Structure Of Ca2+ Sensor (Case-16)
Length = 415
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 13/93 (13%)
Query: 275 GDGALTSRIVARIFEQAPRKFTCKVARHMNYE---------DFVYFLI----SVEDKSSE 321
GDG +T++ + + + T + M E DF FL ++D SE
Sbjct: 290 GDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSE 349
Query: 322 PSVEYWFKLLDLDGNGKLTPGEMRYFYEDHAKK 354
+ F++ D DGNG ++ E+R+ + +K
Sbjct: 350 EEIREAFRVFDKDGNGYISAAELRHVMTNLGEK 382
>pdb|2BBM|A Chain A, Solution Structure Of A Calmodulin-Target Peptide Complex
By Multidimensional Nmr
pdb|2BBN|A Chain A, Solution Structure Of A Calmodulin-Target Peptide Complex
By Multidimensional Nmr
pdb|1MXE|A Chain A, Structure Of The Complex Of Calmodulin With The Target
Sequence Of Camki
pdb|1MXE|B Chain B, Structure Of The Complex Of Calmodulin With The Target
Sequence Of Camki
pdb|4CLN|A Chain A, Structure Of A Recombinant Calmodulin From Drosophila
Melanogaster Refined At 2.2-Angstroms Resolution
Length = 148
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 13/93 (13%)
Query: 275 GDGALTSRIVARIFEQAPRKFTCKVARHMNYE---------DFVYFLI----SVEDKSSE 321
GDG +T++ + + + T + M E DF FL ++D SE
Sbjct: 23 GDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSE 82
Query: 322 PSVEYWFKLLDLDGNGKLTPGEMRYFYEDHAKK 354
+ F++ D DGNG ++ E+R+ + +K
Sbjct: 83 EEIREAFRVFDKDGNGFISAAELRHVMTNLGEK 115
>pdb|1PRW|A Chain A, Crystal Structure Of Bovine Brain Ca++ Calmodulin In A
Compact Form
Length = 149
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 13/85 (15%)
Query: 275 GDGALTSRIVARIFEQAPRKFTCKVARHMNYE---------DFVYFLI----SVEDKSSE 321
GDG +T++ + + + T + M E DF FL ++D SE
Sbjct: 24 GDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSE 83
Query: 322 PSVEYWFKLLDLDGNGKLTPGEMRY 346
+ F++ D DGNG ++ E+R+
Sbjct: 84 EEIREAFRVFDKDGNGYISAAELRH 108
>pdb|1UP5|A Chain A, Chicken Calmodulin
pdb|1UP5|B Chain B, Chicken Calmodulin
Length = 148
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 13/85 (15%)
Query: 275 GDGALTSRIVARIFEQAPRKFTCKVARHMNYE---------DFVYFLI----SVEDKSSE 321
GDG +T++ + + + T + M E DF FL ++D SE
Sbjct: 23 GDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSE 82
Query: 322 PSVEYWFKLLDLDGNGKLTPGEMRY 346
+ F++ D DGNG ++ E+R+
Sbjct: 83 EEIREAFRVFDKDGNGYISAAELRH 107
>pdb|3EVR|A Chain A, Crystal Structure Of Calcium Bound Monomeric Gcamp2
Length = 411
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 13/93 (13%)
Query: 275 GDGALTSRIVARIFEQAPRKFTCKVARHMNYE---------DFVYFLI----SVEDKSSE 321
GDG +T++ + + + T + M E DF FL ++D SE
Sbjct: 287 GDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSE 346
Query: 322 PSVEYWFKLLDLDGNGKLTPGEMRYFYEDHAKK 354
+ F++ D DGNG ++ E+R+ + +K
Sbjct: 347 EEIREAFRVFDKDGNGYISAAELRHVMTNLGEK 379
>pdb|2LV6|A Chain A, The Complex Between Ca-calmodulin And Skeletal Muscle
Myosin Light Chain Kinase From Combination Of Nmr And
Aqueous And Contrast-matched Saxs Data
Length = 148
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 13/93 (13%)
Query: 275 GDGALTSRIVARIFEQAPRKFTCKVARHMNYE---------DFVYFLI----SVEDKSSE 321
GDG +T++ + + + T + M E DF FL ++D SE
Sbjct: 23 GDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSE 82
Query: 322 PSVEYWFKLLDLDGNGKLTPGEMRYFYEDHAKK 354
+ F++ D DGNG ++ E+R+ + +K
Sbjct: 83 EEIREAFRVFDKDGNGFISAAELRHVMTNLGEK 115
>pdb|3EK8|A Chain A, Calcium-Saturated Gcamp2 T116vG87R MUTANT MONOMER
Length = 449
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 13/93 (13%)
Query: 275 GDGALTSRIVARIFEQAPRKFTCKVARHMNYE---------DFVYFLI----SVEDKSSE 321
GDG +T++ + + + T + M E DF FL ++D SE
Sbjct: 324 GDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSE 383
Query: 322 PSVEYWFKLLDLDGNGKLTPGEMRYFYEDHAKK 354
+ F++ D DGNG ++ E+R+ + +K
Sbjct: 384 EEIREAFRVFDKDGNGYISAAELRHVMTNLGEK 416
>pdb|3SG6|A Chain A, Crystal Structure Of Dimeric Gcamp2-Lia(Linker 1)
Length = 450
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 13/93 (13%)
Query: 275 GDGALTSRIVARIFEQAPRKFTCKVARHMNYE---------DFVYFLI----SVEDKSSE 321
GDG +T++ + + + T + M E DF FL ++D SE
Sbjct: 325 GDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSE 384
Query: 322 PSVEYWFKLLDLDGNGKLTPGEMRYFYEDHAKK 354
+ F++ D DGNG ++ E+R+ + +K
Sbjct: 385 EEIREAFRVFDKDGNGYISAAELRHVMTNLGEK 417
>pdb|3EVU|A Chain A, Crystal Structure Of Calcium Bound Dimeric Gcamp2, (#1)
pdb|3EVV|A Chain A, Crystal Structure Of Calcium Bound Dimeric Gcamp2 (#2)
pdb|3EK4|A Chain A, Calcium-Saturated Gcamp2 Monomer
pdb|3EK7|A Chain A, Calcium-Saturated Gcamp2 Dimer
Length = 449
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 13/93 (13%)
Query: 275 GDGALTSRIVARIFEQAPRKFTCKVARHMNYE---------DFVYFLI----SVEDKSSE 321
GDG +T++ + + + T + M E DF FL ++D SE
Sbjct: 324 GDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSE 383
Query: 322 PSVEYWFKLLDLDGNGKLTPGEMRYFYEDHAKK 354
+ F++ D DGNG ++ E+R+ + +K
Sbjct: 384 EEIREAFRVFDKDGNGYISAAELRHVMTNLGEK 416
>pdb|3SG7|A Chain A, Crystal Structure Of Gcamp3-Kf(Linker 1)
Length = 448
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 13/93 (13%)
Query: 275 GDGALTSRIVARIFEQAPRKFTCKVARHMNYE---------DFVYFLI----SVEDKSSE 321
GDG +T++ + + + T + M E DF FL ++D SE
Sbjct: 323 GDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTIDFPEFLTMMARKMKDTDSE 382
Query: 322 PSVEYWFKLLDLDGNGKLTPGEMRYFYEDHAKK 354
+ F++ D DGNG ++ E+R+ + +K
Sbjct: 383 EEIREAFRVFDKDGNGYISAAELRHVMTNLGEK 415
>pdb|3PM8|A Chain A, Cad Domain Of Pff0520w, Calcium Dependent Protein Kinase
pdb|3PM8|B Chain B, Cad Domain Of Pff0520w, Calcium Dependent Protein Kinase
Length = 197
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 290 QAPRKFTCKVARHMNYEDFVYFLISVEDKSSEPSVEYWFKLLDLDGNGKLTPGEM-RYFY 348
Q R + ++Y DF+ I + + FK D+DGNGK++ E+ R F
Sbjct: 97 QVLRDIDSNASGQIHYTDFLAATIDKQTYLKKEVCLIPFKFFDIDGNGKISVEELKRIFG 156
Query: 349 EDHAKKPV 356
D + P+
Sbjct: 157 RDDIENPL 164
>pdb|2JNX|A Chain A, Nmr Derived Solution Structure Of An Ef-Hand Calcium
Binding Protein From Entamoeba Histolytica
Length = 134
Score = 31.6 bits (70), Expect = 0.92, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 9/83 (10%)
Query: 303 MNYEDFVYFLISV--EDKSSEP-SVEYWFKLLDLDGNGKLTPGEMRYFYEDHAKKPVSFE 359
++ +F F +V +D S E ++ +KL+D DG+GKLT E+ F+ K +E
Sbjct: 53 IDLAEFTKFAAAVKEQDLSDEKVGLKILYKLMDADGDGKLTKEEVTTFF-----KKFGYE 107
Query: 360 MILCQIIDMIAPEREEYITLRDL 382
++ QI+ A + YITL +
Sbjct: 108 KVVDQIMKADA-NGDGYITLEEF 129
Score = 28.9 bits (63), Expect = 6.7, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 34/64 (53%)
Query: 303 MNYEDFVYFLISVEDKSSEPSVEYWFKLLDLDGNGKLTPGEMRYFYEDHAKKPVSFEMIL 362
++YE+ F+ S +E ++ FK +D+DGNG++ E F ++ +S E +
Sbjct: 17 VSYEEVKAFVSSKRPIKNEQLLQLIFKAIDIDGNGEIDLAEFTKFAAAVKEQDLSDEKVG 76
Query: 363 CQII 366
+I+
Sbjct: 77 LKIL 80
>pdb|2KZ2|A Chain A, Calmodulin, C-Terminal Domain, F92e Mutant
Length = 94
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 28/52 (53%)
Query: 309 VYFLISVEDKSSEPSVEYWFKLLDLDGNGKLTPGEMRYFYEDHAKKPVSFEM 360
+YF ++D SE + F++ D DGNG ++ E+R+ + +K E+
Sbjct: 16 LYFQSLMKDTDSEEEIREAFRVEDKDGNGYISAAELRHVMTNLGEKLTDEEV 67
>pdb|3EKH|A Chain A, Calcium-Saturated Gcamp2 T116vK378W MUTANT MONOMER
Length = 449
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 13/93 (13%)
Query: 275 GDGALTSRIVARIFEQAPRKFTCKVARHMNYE---------DFVYFLISV----EDKSSE 321
GDG +T++ + + + T + M E DF FL + +D SE
Sbjct: 324 GDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARWMKDTDSE 383
Query: 322 PSVEYWFKLLDLDGNGKLTPGEMRYFYEDHAKK 354
+ F++ D DGNG ++ E+R+ + +K
Sbjct: 384 EEIREAFRVFDKDGNGYISAAELRHVMTNLGEK 416
>pdb|1AHR|A Chain A, Calmodulin Mutant With A Two Residue Deletion In The
Central Helix
Length = 146
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 11/91 (12%)
Query: 275 GDGALTSRIVARIFEQAPRKFTCKVARHMNYE---------DFVYFL--ISVEDKSSEPS 323
GDG +T++ + + + T + M E DF FL ++ + K SE
Sbjct: 23 GDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDSEEE 82
Query: 324 VEYWFKLLDLDGNGKLTPGEMRYFYEDHAKK 354
+ F++ D DGNG ++ E+R+ + +K
Sbjct: 83 IREAFRVFDKDGNGFISAAELRHVMTNLGEK 113
>pdb|2HET|A Chain A, Non-Myristoylated Bovine Recoverin (Truncated At
C-Terminus) With Calcium Bound To Ef-Hand 3
pdb|2HET|B Chain B, Non-Myristoylated Bovine Recoverin (Truncated At
C-Terminus) With Calcium Bound To Ef-Hand 3
pdb|2HET|C Chain C, Non-Myristoylated Bovine Recoverin (Truncated At
C-Terminus) With Calcium Bound To Ef-Hand 3
pdb|2HET|D Chain D, Non-Myristoylated Bovine Recoverin (Truncated At
C-Terminus) With Calcium Bound To Ef-Hand 3
Length = 189
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 14/85 (16%)
Query: 293 RKFTCKVARHMNYEDFVYFLISVEDKSSEPSVEYWFKLLDLDGNGKLTPGEMRYFYEDHA 352
R F ++++++V L + +E+ F L D+DGNG ++ E+
Sbjct: 70 RSFDANSDGTLDFKEYVIALHMTSAGKTNQKLEWAFSLYDVDGNGTISKNEVL------- 122
Query: 353 KKPVSFEMILCQIIDMIAPEREEYI 377
I+ I MI+PE +++
Sbjct: 123 -------EIVTAIFKMISPEDTKHL 140
>pdb|1OMR|A Chain A, Non-Myristoylated Wild-Type Bovine Recoverin With Calcium
Bound To Ef- Hand 3
pdb|1REC|A Chain A, Three-Dimensional Structure Of Recoverin, A Calcium Sensor
In Vision
pdb|1IKU|A Chain A, Myristoylated Recoverin In The Calcium-Free State, Nmr, 22
Structures
Length = 201
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 14/85 (16%)
Query: 293 RKFTCKVARHMNYEDFVYFLISVEDKSSEPSVEYWFKLLDLDGNGKLTPGEMRYFYEDHA 352
R F ++++++V L + +E+ F L D+DGNG ++ E+
Sbjct: 70 RSFDANSDGTLDFKEYVIALHMTSAGKTNQKLEWAFSLYDVDGNGTISKNEVL------- 122
Query: 353 KKPVSFEMILCQIIDMIAPEREEYI 377
I+ I MI+PE +++
Sbjct: 123 -------EIVTAIFKMISPEDTKHL 140
>pdb|1QS7|A Chain A, The 1.8 Angstrom Structure Of Calmodulin Rs20 Peptide
Complex
pdb|1QS7|C Chain C, The 1.8 Angstrom Structure Of Calmodulin Rs20 Peptide
Complex
Length = 145
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 13/93 (13%)
Query: 275 GDGALTSRIVARIFEQAPRKFTCKVARHMNYE---------DFVYFLI----SVEDKSSE 321
GDG +T++ + + + T + M E DF FL ++D SE
Sbjct: 20 GDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSE 79
Query: 322 PSVEYWFKLLDLDGNGKLTPGEMRYFYEDHAKK 354
++ F++ D DGNG ++ E+R+ + +K
Sbjct: 80 EELKEAFRVFDKDGNGFISAAELRHVMTNLGEK 112
>pdb|2I94|A Chain A, Nmr Structure Of Recoverin Bound To Rhodopsin Kinase
Length = 202
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 14/85 (16%)
Query: 293 RKFTCKVARHMNYEDFVYFLISVEDKSSEPSVEYWFKLLDLDGNGKLTPGEMRYFYEDHA 352
R F ++++++V L + +E+ F L D+DGNG ++ E+
Sbjct: 71 RSFDANSDGTLDFKEYVIALHMTSAGKTNQKLEWAFSLYDVDGNGTISKNEVL------- 123
Query: 353 KKPVSFEMILCQIIDMIAPEREEYI 377
I+ I MI+PE +++
Sbjct: 124 -------EIVTAIFKMISPEDTKHL 141
>pdb|1JSA|A Chain A, Myristoylated Recoverin With Two Calciums Bound, Nmr, 24
Structures
Length = 201
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 14/85 (16%)
Query: 293 RKFTCKVARHMNYEDFVYFLISVEDKSSEPSVEYWFKLLDLDGNGKLTPGEMRYFYEDHA 352
R F ++++++V L + +E+ F L D+DGNG ++ E+
Sbjct: 70 RSFDANSDGTLDFKEYVIALHMTSAGKTNQKLEWAFSLYDVDGNGTISKNEVL------- 122
Query: 353 KKPVSFEMILCQIIDMIAPEREEYI 377
I+ I MI+PE +++
Sbjct: 123 -------EIVTAIFKMISPEDTKHL 140
>pdb|3LIJ|A Chain A, Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820) In
Complex With Ca2+ And Amppnp
Length = 494
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 302 HMNYEDFVYFLISVEDKSSEPSVEYWFKLLDLDGNGKLTPGEM-RYFYEDHAKKPVSFEM 360
+++Y +FV + + S+ +E F+ D DGNGK++ E+ F DH + EM
Sbjct: 406 YIDYSEFVTVAMDRKSLLSKDKLESAFQKFDQDGNGKISVDELASVFGLDHLESKTWKEM 465
Query: 361 I 361
I
Sbjct: 466 I 466
>pdb|4EWF|A Chain A, The Crystal Structure Of Beta-Lactamase From Sphaerobacter
Thermophilus Dsm 20745
pdb|4EWF|B Chain B, The Crystal Structure Of Beta-Lactamase From Sphaerobacter
Thermophilus Dsm 20745
pdb|4EWF|C Chain C, The Crystal Structure Of Beta-Lactamase From Sphaerobacter
Thermophilus Dsm 20745
pdb|4EWF|D Chain D, The Crystal Structure Of Beta-Lactamase From Sphaerobacter
Thermophilus Dsm 20745
Length = 275
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 275 GDGALTSRIVARIFEQAPRK---FTCKVARHMNYEDFVYFLISVEDKSS 320
G+ ALT RIV R ++AP + ED VY IS+ D ++
Sbjct: 69 GERALTDRIVLRAADKAPGSGVLLHLHDGLELTLEDLVYLTISISDNTA 117
>pdb|1CLM|A Chain A, Structure Of Paramecium Tetraurelia Calmodulin At 1.8
Angstroms Resolution
Length = 148
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 13/93 (13%)
Query: 275 GDGALTSRIVARIFEQAPRKFTCKVARHMNYE---------DFVYFLI----SVEDKSSE 321
GDG +T++ + + + T + M E DF FL ++++ SE
Sbjct: 23 GDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLMARKMKEQDSE 82
Query: 322 PSVEYWFKLLDLDGNGKLTPGEMRYFYEDHAKK 354
+ FK+ D DGNG ++ E+R+ + +K
Sbjct: 83 EELIEAFKVFDRDGNGLISAAELRHVMTNLGEK 115
>pdb|1EXR|A Chain A, The 1.0 Angstrom Crystal Structure Of Ca+2 Bound
Calmodulin
pdb|1N0Y|A Chain A, Crystal Structure Of Pb-Bound Calmodulin
pdb|1N0Y|B Chain B, Crystal Structure Of Pb-Bound Calmodulin
pdb|1OSA|A Chain A, Crystal Structure Of Recombinant Paramecium Tetraurelia
Calmodulin At 1.68 Angstroms Resolution
Length = 148
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 13/93 (13%)
Query: 275 GDGALTSRIVARIFEQAPRKFTCKVARHMNYE---------DFVYFLI----SVEDKSSE 321
GDG +T++ + + + T + M E DF FL ++++ SE
Sbjct: 23 GDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLMARKMKEQDSE 82
Query: 322 PSVEYWFKLLDLDGNGKLTPGEMRYFYEDHAKK 354
+ FK+ D DGNG ++ E+R+ + +K
Sbjct: 83 EELIEAFKVFDRDGNGLISAAELRHVMTNLGEK 115
>pdb|3L19|A Chain A, Crystal Structure Of Calcium Binding Domain Of Cpcdpk3,
Cgd5_820
pdb|3L19|B Chain B, Crystal Structure Of Calcium Binding Domain Of Cpcdpk3,
Cgd5_820
Length = 214
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 302 HMNYEDFVYFLISVEDKSSEPSVEYWFKLLDLDGNGKLTPGEM-RYFYEDHAKKPVSFEM 360
+++Y +FV + + S+ +E F+ D DGNGK++ E+ F DH + EM
Sbjct: 123 YIDYSEFVTVAMDRKSLLSKDKLESAFQKFDQDGNGKISVDELASVFGLDHLESKTWKEM 182
Query: 361 I 361
I
Sbjct: 183 I 183
>pdb|1OMV|A Chain A, Non-Myristoylated Bovine Recoverin (E85q Mutant) With
Calcium Bound To Ef-Hand 3
Length = 201
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 14/85 (16%)
Query: 293 RKFTCKVARHMNYEDFVYFLISVEDKSSEPSVEYWFKLLDLDGNGKLTPGEMRYFYEDHA 352
R F ++++ +V L + +E+ F L D+DGNG ++ E+
Sbjct: 70 RSFDANSDGTLDFKQYVIALHMTSAGKTNQKLEWAFSLYDVDGNGTISKNEVL------- 122
Query: 353 KKPVSFEMILCQIIDMIAPEREEYI 377
I+ I MI+PE +++
Sbjct: 123 -------EIVTAIFKMISPEDTKHL 140
>pdb|1LA3|A Chain A, Solution Structure Of Recoverin Mutant, E85q
Length = 201
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 14/85 (16%)
Query: 293 RKFTCKVARHMNYEDFVYFLISVEDKSSEPSVEYWFKLLDLDGNGKLTPGEMRYFYEDHA 352
R F ++++ +V L + +E+ F L D+DGNG ++ E+
Sbjct: 70 RSFDANSDGTLDFKQYVIALHMTSAGKTNQKLEWAFSLYDVDGNGTISKNEVL------- 122
Query: 353 KKPVSFEMILCQIIDMIAPEREEYI 377
I+ I MI+PE +++
Sbjct: 123 -------EIVTAIFKMISPEDTKHL 140
>pdb|3SG2|A Chain A, Crystal Structure Of Gcamp2-T116v,D381y
Length = 449
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 12/61 (19%)
Query: 294 KFTCKVARHMNYEDFVYFLISVEDKSSEPSVEYWFKLLDLDGNGKLTPGEMRYFYEDHAK 353
+F +AR M Y D SE + F++ D DGNG ++ E+R+ + +
Sbjct: 368 EFLTMMARKMKYTD------------SEEEIREAFRVFDKDGNGYISAAELRHVMTNLGE 415
Query: 354 K 354
K
Sbjct: 416 K 416
>pdb|3SG3|A Chain A, Crystal Structure Of Gcamp3-D380y
Length = 449
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 12/61 (19%)
Query: 294 KFTCKVARHMNYEDFVYFLISVEDKSSEPSVEYWFKLLDLDGNGKLTPGEMRYFYEDHAK 353
+F +AR M Y D SE + F++ D DGNG ++ E+R+ + +
Sbjct: 368 EFLTMMARKMKYTD------------SEEEIREAFRVFDKDGNGYISAAELRHVMTNLGE 415
Query: 354 K 354
K
Sbjct: 416 K 416
>pdb|2D8N|A Chain A, Crystal Structure Of Human Recoverin At 2.2 A Resolution
Length = 207
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 27/52 (51%)
Query: 293 RKFTCKVARHMNYEDFVYFLISVEDKSSEPSVEYWFKLLDLDGNGKLTPGEM 344
R F + ++++++V L + +E+ F L D+DGNG ++ E+
Sbjct: 78 RSFDSNLDGTLDFKEYVIALHXTTAGKTNQKLEWAFSLYDVDGNGTISKNEV 129
>pdb|2HF5|A Chain A, The Structure And Function Of A Novel Two-Site Calcium-
Binding Fragment Of Calmodulin
Length = 68
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 307 DFVYFLI----SVEDKSSEPSVEYWFKLLDLDGNGKLTPGEMRY 346
DF FL ++D SE + F++ D DGNG ++ E+R+
Sbjct: 19 DFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRH 62
>pdb|3SG4|A Chain A, Crystal Structure Of Gcamp3-D380y, Lp(Linker 2)
Length = 448
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 12/61 (19%)
Query: 294 KFTCKVARHMNYEDFVYFLISVEDKSSEPSVEYWFKLLDLDGNGKLTPGEMRYFYEDHAK 353
+F +AR M Y D SE + F++ D DGNG ++ E+R+ + +
Sbjct: 367 EFLTMMARKMKYTD------------SEEEIREAFRVFDKDGNGYISAAELRHVMTNLGE 414
Query: 354 K 354
K
Sbjct: 415 K 415
>pdb|1FW4|A Chain A, Crystal Structure Of E. Coli Fragment Tr2c From Calmodulin
To 1.7 A Resolution
pdb|2LQP|A Chain A, Nmr Solution Structure Of The Ca2+-Calmodulin C-Terminal
Domain In A Complex With A Peptide (Nscate) From The
L-Type Voltage-Gated Calcium Channel Alpha1c Subunit
Length = 71
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 317 DKSSEPSVEYWFKLLDLDGNGKLTPGEMRYFYEDHAKKPVSFEM 360
D SE + F++ D DGNG ++ E+R+ + +K E+
Sbjct: 1 DTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEV 44
>pdb|1CMF|A Chain A, Nmr Solution Structure Of Apo Calmodulin Carboxy-Terminal
Domain
pdb|1CMG|A Chain A, Nmr Solution Structure Of Calcium-Loaded Calmodulin
Carboxy- Terminal Domain
Length = 73
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 315 VEDKSSEPSVEYWFKLLDLDGNGKLTPGEMRYFYEDHAKKPVSFEM 360
++D SE + F++ D DGNG ++ E+R+ + +K E+
Sbjct: 1 MKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEV 46
>pdb|1YRU|B Chain B, Crystal Structure Analysis Of The Adenylyl Cyclaes
Catalytic Domain Of Adenylyl Cyclase Toxin Of Bordetella
Pertussis In Presence Of C-Terminal Calmodulin And 1mm
Calcium Chloride
pdb|1YRT|B Chain B, Crystal Structure Analysis Of The Adenylyl Cyclaes
Catalytic Domain Of Adenylyl Cyclase Toxin Of Bordetella
Pertussis In Presence Of C-Terminal Calmodulin
Length = 74
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 315 VEDKSSEPSVEYWFKLLDLDGNGKLTPGEMRYFYEDHAKKPVSFEM 360
++D SE + F++ D DGNG ++ E+R+ + +K E+
Sbjct: 2 MKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEV 47
>pdb|3SG5|A Chain A, Crystal Structure Of Dimeric Gcamp3-D380y, Qp(Linker 1),
Lp(Linker 2)
Length = 448
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 13/93 (13%)
Query: 275 GDGALTSRIVARIFEQAPRKFTCKVARHMNYE---------DFVYFLISVEDK----SSE 321
GDG +T++ + + + T + M E DF FL + K SE
Sbjct: 323 GDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTIDFPEFLTMMARKMKYTDSE 382
Query: 322 PSVEYWFKLLDLDGNGKLTPGEMRYFYEDHAKK 354
+ F++ D DGNG ++ E+R+ + +K
Sbjct: 383 EEIREAFRVFDKDGNGYISAAELRHVMTNLGEK 415
>pdb|2LMT|A Chain A, Nmr Structure Of Androcam
pdb|2LMU|A Chain A, Androcam At High Calcium
pdb|2LMV|A Chain A, Androcam At High Calcium With Three Explicit Ca2+
Length = 148
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 302 HMNYEDFVYFLI-SVEDKSSEPSVEYWFKLLDLDGNGKLTPGEMRY 346
+N+ +F + + + +E + FK+ D DG+G ++P E+R+
Sbjct: 62 QLNFTEFCGIMAKQMRETDTEEEMREAFKIFDRDGDGFISPAELRF 107
>pdb|2L1W|A Chain A, The Solution Structure Of Soybean Calmodulin Isoform 4
Complexed With The Vacuolar Calcium Atpase Bca1 Peptide
Length = 149
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 13/85 (15%)
Query: 275 GDGALTSR---IVARIFEQAP-----RKFTCKVARHMN----YEDFVYFLIS-VEDKSSE 321
GDG +T V R +Q P + +V N +++F+ + V+D +E
Sbjct: 23 GDGCITVEELATVIRSLDQNPTEEELQDMISEVDADGNGTIEFDEFLSLMAKKVKDTDAE 82
Query: 322 PSVEYWFKLLDLDGNGKLTPGEMRY 346
++ FK+ D D NG ++ E+R+
Sbjct: 83 EELKEAFKVFDKDQNGYISASELRH 107
>pdb|1Y6W|A Chain A, Trapped Intermediate Of Calmodulin
Length = 148
Score = 28.9 bits (63), Expect = 5.6, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 316 EDKSSEPSVEYWFKLLDLDGNGKLTPGEMRYFYEDHAKK 354
+D SE + F++ D DGNG ++ E+R+ + +K
Sbjct: 77 KDTDSEEEIREAFRVFDKDGNGYISAAELRHVXTNLGEK 115
>pdb|2GGZ|A Chain A, Crystal Structure Of Human Guanylate Cyclase Activating
Protein-3
pdb|2GGZ|B Chain B, Crystal Structure Of Human Guanylate Cyclase Activating
Protein-3
Length = 211
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 305 YEDFVYFLISVE---DKSSEPSVEYWFKLLDLDGNGKLTPGEM 344
+ DF+ F+ +V + E ++++FKL D DGNG + E+
Sbjct: 73 FVDFLEFIAAVNLIMQEKMEQKLKWYFKLYDADGNGSIDKNEL 115
>pdb|1OE9|B Chain B, Crystal Structure Of Myosin V Motor With Essential Light
Chain - Nucleotide-Free
pdb|1W7I|B Chain B, Crystal Structure Of Myosin V Motor Without Nucleotide
Soaked In 10 Mm Mgadp
pdb|1W7J|B Chain B, Crystal Structure Of Myosin V Motor With Essential Light
Chain + Adp-Befx - Near Rigor
Length = 151
Score = 28.9 bits (63), Expect = 5.9, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 300 ARHMNYEDFVYFLISVEDKSSEPSVEYW---FKLLDLDGNGKLTPGEMRY 346
+R +++E F+ L +V + + E + F++ D +GNGK+ E+R+
Sbjct: 62 SRRVDFETFLPMLQAVAKNRGQGTYEDYLEGFRVFDKEGNGKVMGAELRH 111
>pdb|2R2I|A Chain A, Myristoylated Guanylate Cyclase Activating Protein-1 With
Calcium Bound
Length = 198
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 29/56 (51%)
Query: 289 EQAPRKFTCKVARHMNYEDFVYFLISVEDKSSEPSVEYWFKLLDLDGNGKLTPGEM 344
EQ F ++++ ++V L V + + ++FKL D+DGNG + GE+
Sbjct: 55 EQMFETFDFNKDGYIDFMEYVAALSLVLKGKVDQKLRWYFKLYDVDGNGCIDRGEL 110
>pdb|1XFX|O Chain O, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|P Chain P, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|Q Chain Q, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|R Chain R, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|S Chain S, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|T Chain T, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
Length = 149
Score = 28.9 bits (63), Expect = 6.8, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 307 DFVYFLI----SVEDKSSEPSVEYWFKLLDLDGNGKLTPGEMRYFYEDHAKK 354
DF FL +D SE + F++ D DGNG ++ E+R+ + +K
Sbjct: 65 DFPEFLTXXARKXKDTDSEEEIREAFRVFDKDGNGYISAAELRHVXTNLGEK 116
>pdb|1NIW|A Chain A, Crystal Structure Of Endothelial Nitric Oxide Synthase
Peptide Bound To Calmodulin
pdb|1NIW|C Chain C, Crystal Structure Of Endothelial Nitric Oxide Synthase
Peptide Bound To Calmodulin
pdb|1NIW|E Chain E, Crystal Structure Of Endothelial Nitric Oxide Synthase
Peptide Bound To Calmodulin
pdb|1NIW|G Chain G, Crystal Structure Of Endothelial Nitric Oxide Synthase
Peptide Bound To Calmodulin
pdb|1QX7|I Chain I, Crystal Structure Of Apocam Bound To The Gating Domain Of
Small Conductance Ca2+-Activated Potassium Channel
pdb|1QX7|R Chain R, Crystal Structure Of Apocam Bound To The Gating Domain Of
Small Conductance Ca2+-Activated Potassium Channel
pdb|1QX7|A Chain A, Crystal Structure Of Apocam Bound To The Gating Domain Of
Small Conductance Ca2+-Activated Potassium Channel
pdb|1QX7|B Chain B, Crystal Structure Of Apocam Bound To The Gating Domain Of
Small Conductance Ca2+-Activated Potassium Channel
pdb|1QX7|M Chain M, Crystal Structure Of Apocam Bound To The Gating Domain Of
Small Conductance Ca2+-Activated Potassium Channel
Length = 148
Score = 28.9 bits (63), Expect = 7.2, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 307 DFVYFLI----SVEDKSSEPSVEYWFKLLDLDGNGKLTPGEMRYFYEDHAKK 354
DF FL +D SE + F++ D DGNG ++ E+R+ + +K
Sbjct: 64 DFPEFLTXXARKXKDTDSEEEIREAFRVFDKDGNGYISAAELRHVXTNLGEK 115
>pdb|2BEC|A Chain A, Crystal Structure Of Chp2 In Complex With Its Binding
Region In Nhe1 And Insights Into The Mechanism Of Ph
Regulation
Length = 202
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 53/132 (40%), Gaps = 30/132 (22%)
Query: 235 DTDGVLRY--FSYKQFYVIYRKFGEVDANHDFLIDQGDLMTYGDGA---LTSRIVARIFE 289
D D + R FS ++ +F +D N + + DL G A L RI+ F
Sbjct: 13 DGDSIRRETGFSQASLLRLHHRFRALDRNKKGYLSRMDLQQIGALAVNPLGDRIIESFFP 72
Query: 290 QAPRKFTCKVARHMNYEDFVYFLIS---VEDKSSEPS--------------VEYWFKLLD 332
++ +++ FV L VED+ +E + Y F+L D
Sbjct: 73 DGSQR--------VDFPGFVRVLAHFRPVEDEDTETQDPKKPEPLNSRRNKLHYAFQLYD 124
Query: 333 LDGNGKLTPGEM 344
LD +GK++ EM
Sbjct: 125 LDRDGKISRHEM 136
>pdb|1VRK|A Chain A, The 1.9 Angstrom Structure Of E84k-Calmodulin Rs20 Peptide
Complex
Length = 148
Score = 28.5 bits (62), Expect = 9.3, Method: Composition-based stats.
Identities = 12/40 (30%), Positives = 24/40 (60%)
Query: 315 VEDKSSEPSVEYWFKLLDLDGNGKLTPGEMRYFYEDHAKK 354
++D SE ++ F++ D DGNG ++ E+R+ + +K
Sbjct: 76 MKDTDSEEKLKEAFRVFDKDGNGFISAAELRHVMTNLGEK 115
>pdb|1QTX|A Chain A, The 1.65 Angstrom Structure Of Calmodulin Rs20 Peptide
Complex
Length = 148
Score = 28.5 bits (62), Expect = 9.4, Method: Composition-based stats.
Identities = 12/40 (30%), Positives = 24/40 (60%)
Query: 315 VEDKSSEPSVEYWFKLLDLDGNGKLTPGEMRYFYEDHAKK 354
++D SE ++ F++ D DGNG ++ E+R+ + +K
Sbjct: 76 MKDTDSEEELKEAFRVFDKDGNGFISAAELRHVMTNLGEK 115
>pdb|1U4C|A Chain A, Structure Of Spindle Checkpoint Protein Bub3
pdb|1U4C|B Chain B, Structure Of Spindle Checkpoint Protein Bub3
Length = 349
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 54/144 (37%), Gaps = 19/144 (13%)
Query: 225 PAMQRVDDEEDTDGVLRYFSYKQFYVIYRKFGEVDANHDFLIDQGDLMTYGDGALTSRIV 284
P+ Q + + E G+ R Y +I A+ D LI+ D YGDG + + +
Sbjct: 90 PSFQALTNNEANLGICRICKYGDDKLIA-------ASWDGLIEVIDPRNYGDGVIAVKNL 142
Query: 285 ARIFEQAPRKFTCKVARHMNYEDFVYFLISVEDKSSEPSVEYWFKL-LDLDGNGKLTPGE 343
KV + D + V +S+ WF+L L D NG +
Sbjct: 143 --------NSNNTKVKNKIFTXDTNSSRLIVGXNNSQVQ---WFRLPLCEDDNGTIEESG 191
Query: 344 MRYFYEDHAKKPVSFEMILCQIID 367
++Y D A P E C ID
Sbjct: 192 LKYQIRDVALLPKEQEGYACSSID 215
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.142 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,786,811
Number of Sequences: 62578
Number of extensions: 598947
Number of successful extensions: 1347
Number of sequences better than 100.0: 81
Number of HSP's better than 100.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1263
Number of HSP's gapped (non-prelim): 99
length of query: 464
length of database: 14,973,337
effective HSP length: 102
effective length of query: 362
effective length of database: 8,590,381
effective search space: 3109717922
effective search space used: 3109717922
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)