Query 037841
Match_columns 561
No_of_seqs 283 out of 2389
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 07:44:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037841.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037841hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kg2_A Glutamate receptor 2; I 100.0 2.1E-55 7.3E-60 505.8 24.9 419 1-453 360-814 (823)
2 1yae_A Glutamate receptor, ion 99.9 1.4E-27 4.9E-32 242.9 15.7 278 45-420 9-305 (312)
3 3g3k_A Glutamate receptor, ion 99.9 1.2E-25 4.1E-30 221.5 16.1 238 47-406 2-258 (259)
4 4h5g_A Amino acid ABC superfam 99.9 3.1E-25 1.1E-29 217.1 15.6 224 48-400 11-237 (243)
5 2a5s_A N-methyl-D-aspartate re 99.9 1.7E-26 5.8E-31 231.9 6.6 251 44-406 24-283 (284)
6 4gvo_A LMO2349 protein; struct 99.9 2.5E-25 8.4E-30 217.9 14.3 224 47-401 7-236 (243)
7 2v3u_A Glutamate receptor delt 99.9 1.2E-24 4E-29 214.7 18.6 241 47-406 1-264 (265)
8 1pb7_A N-methyl-D-aspartate re 99.9 2.4E-25 8.2E-30 224.6 11.1 235 49-406 41-291 (292)
9 2rc8_A Glutamate [NMDA] recept 99.9 1.2E-24 4.1E-29 219.6 12.4 213 79-406 68-293 (294)
10 3kzg_A Arginine 3RD transport 99.9 7.6E-24 2.6E-28 205.6 17.5 224 48-405 2-235 (237)
11 3k4u_A Binding component of AB 99.9 7.2E-24 2.5E-28 206.8 17.3 231 47-407 3-235 (245)
12 1mqi_A Glutamate receptor 2; G 99.9 1.7E-23 5.7E-28 206.7 17.4 239 48-406 3-262 (263)
13 4f3p_A Glutamine-binding perip 99.9 3.3E-23 1.1E-27 202.7 19.0 223 47-403 22-245 (249)
14 3hv1_A Polar amino acid ABC up 99.9 2.5E-23 8.6E-28 206.0 17.6 223 47-402 19-250 (268)
15 3i6v_A Periplasmic His/Glu/Gln 99.9 1.6E-23 5.6E-28 203.1 15.5 221 47-408 3-225 (232)
16 3kbr_A Cyclohexadienyl dehydra 99.9 2.7E-23 9.4E-28 201.6 15.2 222 47-400 13-237 (239)
17 3del_B Arginine binding protei 99.9 5.6E-23 1.9E-27 199.8 16.8 222 47-405 9-237 (242)
18 1ii5_A SLR1257 protein; membra 99.9 1.8E-22 6.2E-27 194.4 19.5 222 48-401 3-227 (233)
19 3tql_A Arginine-binding protei 99.9 1.1E-22 3.9E-27 194.8 17.3 219 49-399 2-227 (227)
20 3h7m_A Sensor protein; histidi 99.9 2.3E-22 8E-27 193.7 17.8 222 46-401 8-231 (234)
21 1wdn_A GLNBP, glutamine bindin 99.9 4.9E-22 1.7E-26 190.2 18.5 220 49-402 3-224 (226)
22 3mpk_A Virulence sensor protei 99.9 3.2E-22 1.1E-26 198.4 16.7 220 48-401 31-253 (267)
23 2iee_A ORF2, probable ABC tran 99.9 1.1E-22 3.7E-27 202.2 12.7 229 40-400 12-246 (271)
24 4dz1_A DALS D-alanine transpor 99.9 8.3E-22 2.8E-26 194.4 19.0 223 47-401 27-254 (259)
25 2y7i_A STM4351; arginine-bindi 99.9 1.1E-21 3.7E-26 188.6 18.7 218 47-400 4-228 (229)
26 4eq9_A ABC transporter substra 99.9 8.6E-22 3E-26 191.4 16.5 221 48-401 7-236 (246)
27 1lst_A Lysine, arginine, ornit 99.9 1.2E-21 3.9E-26 189.9 17.2 222 48-401 3-233 (239)
28 2q88_A EHUB, putative ABC tran 99.9 2.5E-21 8.5E-26 190.0 15.7 223 48-399 12-239 (257)
29 2pyy_A Ionotropic glutamate re 99.9 2.9E-21 9.9E-26 185.1 14.8 221 48-401 2-223 (228)
30 2pvu_A ARTJ; basic amino acid 99.9 1.7E-20 5.7E-25 186.3 19.8 241 26-401 16-263 (272)
31 4i62_A Amino acid ABC transpor 99.8 9.5E-21 3.2E-25 186.6 16.5 224 48-401 38-265 (269)
32 3qax_A Probable ABC transporte 99.8 1.9E-20 6.4E-25 184.4 17.4 219 48-402 30-255 (268)
33 2vha_A Periplasmic binding tra 99.8 2.7E-20 9.1E-25 186.1 17.7 228 47-405 15-253 (287)
34 2yln_A Putative ABC transporte 99.8 2E-20 6.9E-25 187.3 16.0 219 48-402 56-279 (283)
35 1xt8_A Putative amino-acid tra 99.8 3.9E-20 1.3E-24 185.7 15.7 218 48-400 43-265 (292)
36 2yjp_A Putative ABC transporte 99.8 4.5E-20 1.5E-24 185.5 15.5 218 48-400 54-276 (291)
37 2v25_A Major cell-binding fact 99.7 4.6E-18 1.6E-22 166.1 11.1 214 48-399 37-258 (259)
38 3n5l_A Binding protein compone 99.0 2.5E-09 8.6E-14 108.1 11.5 213 49-398 4-241 (310)
39 3p7i_A PHND, subunit of alkylp 98.9 1E-08 3.5E-13 104.2 12.6 212 48-398 13-250 (321)
40 2ozz_A Hypothetical protein YH 98.7 2.9E-08 9.9E-13 94.9 9.4 180 78-399 29-223 (231)
41 2x26_A Periplasmic aliphatic s 98.2 2.1E-05 7.1E-10 78.5 14.6 118 274-399 97-231 (308)
42 3ksx_A Nitrate transport prote 98.1 4.9E-05 1.7E-09 76.6 16.5 91 274-371 123-219 (324)
43 3uif_A Sulfonate ABC transport 98.0 3.3E-05 1.1E-09 78.8 12.8 104 274-384 111-227 (348)
44 3un6_A Hypothetical protein sa 97.8 4.9E-05 1.7E-09 77.3 10.2 121 274-400 145-283 (341)
45 3qsl_A Putative exported prote 97.8 0.00018 6.2E-09 72.5 14.2 136 91-348 59-205 (346)
46 3ix1_A N-formyl-4-amino-5-amin 97.7 0.00019 6.4E-09 71.4 10.9 76 78-163 16-95 (302)
47 2f5x_A BUGD; periplasmic bindi 97.3 0.0034 1.1E-07 62.9 14.7 120 274-398 123-275 (312)
48 2dvz_A BUGE, putative exported 97.2 0.005 1.7E-07 61.7 14.1 120 274-398 127-279 (314)
49 2qpq_A Protein BUG27; alpha/be 97.1 0.0063 2.2E-07 60.6 14.4 118 274-398 114-266 (301)
50 4ddd_A Immunogenic protein; ss 96.9 0.003 1E-07 63.8 9.6 59 274-338 138-203 (327)
51 2x7q_A Ca3427, possible thiami 96.5 0.0093 3.2E-07 59.7 10.2 105 274-388 112-236 (321)
52 1zbm_A Hypothetical protein AF 96.5 0.0052 1.8E-07 60.1 8.0 102 278-388 99-210 (280)
53 4ab5_A Transcriptional regulat 96.4 0.023 7.9E-07 52.3 11.7 85 48-165 7-91 (222)
54 3ho7_A OXYR; beta-alpha-barrel 96.1 0.068 2.3E-06 49.5 13.0 84 48-164 10-93 (232)
55 2zzv_A ABC transporter, solute 96.0 0.084 2.9E-06 53.8 14.2 60 271-341 163-222 (361)
56 2k1e_A Water soluble analogue 95.9 0.0064 2.2E-07 50.2 4.3 77 188-268 18-96 (103)
57 2ih3_C Voltage-gated potassium 95.9 0.017 6E-07 49.2 7.1 74 190-267 41-116 (122)
58 2g29_A Nitrate transport prote 95.5 0.092 3.2E-06 54.6 12.5 103 278-387 151-272 (417)
59 3eff_K Voltage-gated potassium 95.5 0.043 1.5E-06 47.8 8.2 73 191-267 21-95 (139)
60 2pfy_A Putative exported prote 95.5 0.21 7.1E-06 49.4 14.3 100 272-384 129-231 (301)
61 2pfz_A Putative exported prote 95.4 0.18 6.2E-06 49.8 13.4 100 272-384 128-230 (301)
62 2a9h_A Voltage-gated potassium 95.3 0.036 1.2E-06 49.3 7.2 77 190-270 64-142 (155)
63 1atg_A MODA, periplasmic molyb 95.2 0.16 5.4E-06 46.9 11.9 70 84-164 15-90 (231)
64 3fzv_A Probable transcriptiona 95.1 0.69 2.4E-05 44.7 16.8 194 48-385 94-294 (306)
65 3oxn_A Putative transcriptiona 95.1 0.29 9.9E-06 45.6 13.5 85 48-165 18-102 (241)
66 2hzl_A Trap-T family sorbitol/ 95.1 0.14 4.8E-06 52.1 12.0 100 272-384 163-267 (365)
67 1us5_A Putative GLUR0 ligand b 94.9 0.11 3.8E-06 51.2 10.3 59 274-338 123-188 (314)
68 3jv9_A OXYR, transcriptional r 94.9 0.48 1.6E-05 42.9 14.0 70 82-165 18-87 (219)
69 2fyi_A HTH-type transcriptiona 94.7 1.4 4.8E-05 40.4 17.1 85 48-164 13-97 (228)
70 2y7p_A LYSR-type regulatory pr 94.7 0.58 2E-05 43.0 14.1 71 81-165 21-91 (218)
71 2esn_A Probable transcriptiona 94.6 0.65 2.2E-05 45.1 15.1 177 82-385 115-301 (310)
72 2ql3_A Probable transcriptiona 94.6 1.3 4.5E-05 39.7 16.3 69 82-164 19-87 (209)
73 2hxr_A HTH-type transcriptiona 94.5 1.4 4.7E-05 40.7 16.3 69 82-164 44-112 (238)
74 1al3_A Cys regulon transcripti 94.1 2.5 8.7E-05 41.3 18.3 192 82-400 107-305 (324)
75 3fxq_A LYSR type regulator of 94.1 0.68 2.3E-05 45.0 13.9 72 82-165 106-177 (305)
76 1i6a_A OXYR, hydrogen peroxide 94.1 0.13 4.4E-06 47.3 8.1 84 48-164 4-87 (219)
77 4esw_A Pyrimidine biosynthesis 94.0 0.22 7.6E-06 49.9 10.3 64 274-344 103-170 (342)
78 4h33_A LMO2059 protein; bilaye 93.8 0.13 4.3E-06 44.7 6.9 56 213-268 42-99 (137)
79 3gzg_A Molybdate-binding perip 93.6 0.59 2E-05 44.8 12.0 70 84-164 38-113 (253)
80 1ixc_A CBNR, LYSR-type regulat 93.5 1.1 3.8E-05 42.9 14.0 84 48-164 90-173 (294)
81 3ldc_A Calcium-gated potassium 93.0 0.3 1E-05 38.2 7.2 52 214-265 28-81 (82)
82 3r26_A Molybdate-binding perip 92.9 1.2 4E-05 42.0 12.8 115 274-398 107-232 (237)
83 3ouf_A Potassium channel prote 92.1 0.18 6.2E-06 40.8 5.0 57 213-269 31-89 (97)
84 2xwv_A Sialic acid-binding per 92.1 2.2 7.5E-05 42.2 14.0 101 272-384 133-236 (312)
85 4gx0_A TRKA domain protein; me 92.0 0.29 9.9E-06 52.9 8.0 120 214-340 51-181 (565)
86 2i49_A Bicarbonate transporter 92.0 0.79 2.7E-05 47.7 11.1 106 277-387 153-280 (429)
87 1sw5_A Osmoprotection protein 91.9 1.1 3.8E-05 43.3 11.4 113 274-397 125-252 (275)
88 2q67_A Potassium channel prote 91.8 0.37 1.3E-05 40.2 6.7 54 214-267 49-104 (114)
89 2h9b_A HTH-type transcriptiona 91.5 3.8 0.00013 39.7 15.1 69 82-164 104-172 (312)
90 1uth_A LYSR-type regulatory pr 91.4 1.9 6.6E-05 42.0 12.8 69 82-164 119-187 (315)
91 2hpg_A ABC transporter, peripl 91.2 0.87 3E-05 45.5 10.0 102 271-384 147-251 (327)
92 3vou_A ION transport 2 domain 91.2 0.66 2.3E-05 40.6 8.0 54 214-267 52-107 (148)
93 2h98_A HTH-type transcriptiona 90.8 5 0.00017 39.0 15.2 69 82-164 104-172 (313)
94 1p7b_A Integral membrane chann 90.8 0.37 1.3E-05 48.3 6.7 61 210-270 92-154 (333)
95 1xl4_A Inward rectifier potass 90.8 0.51 1.7E-05 46.6 7.6 61 209-269 77-139 (301)
96 1r9l_A Glycine betaine-binding 90.5 0.82 2.8E-05 45.2 9.0 40 84-133 24-63 (309)
97 1orq_C Potassium channel; volt 90.5 0.52 1.8E-05 44.1 7.2 71 192-266 147-219 (223)
98 3kos_A HTH-type transcriptiona 90.3 3.7 0.00013 37.0 12.9 103 275-385 96-203 (219)
99 1xs5_A 29 kDa protein, membran 90.1 5.3 0.00018 37.8 14.0 36 87-132 21-56 (241)
100 2vpn_A Periplasmic substrate b 89.3 1.3 4.5E-05 43.8 9.5 102 271-384 129-233 (316)
101 1twy_A ABC transporter, peripl 89.1 13 0.00043 35.0 16.2 72 82-164 41-113 (290)
102 1lnq_A MTHK channels, potassiu 88.9 0.2 7E-06 50.2 3.1 124 214-345 45-171 (336)
103 3pjs_K KCSA, voltage-gated pot 88.8 0.027 9.2E-07 50.8 -3.2 72 193-268 50-123 (166)
104 3onm_A Transcriptional regulat 88.5 11 0.00037 34.5 14.9 83 48-165 26-108 (238)
105 3beh_A MLL3241 protein; transm 87.1 0.73 2.5E-05 46.5 6.0 72 191-266 142-215 (355)
106 3hn0_A Nitrate transport prote 85.5 1.1 3.9E-05 43.5 6.2 61 283-348 95-161 (283)
107 2qks_A KIR3.1-prokaryotic KIR 84.3 2.1 7.1E-05 42.6 7.5 57 214-270 78-136 (321)
108 2rin_A Putative glycine betain 84.3 2 6.9E-05 42.1 7.4 62 274-341 105-182 (298)
109 2de3_A Dibenzothiophene desulf 82.5 2.1 7.2E-05 43.3 6.9 120 271-399 108-298 (365)
110 3k6v_A Solute-binding protein 82.1 25 0.00085 35.2 14.6 70 85-165 59-134 (354)
111 3tmg_A Glycine betaine, L-prol 81.9 7.1 0.00024 37.8 10.2 42 82-134 30-71 (280)
112 3l6g_A Betaine ABC transporter 81.2 4.7 0.00016 38.5 8.5 95 266-371 89-199 (256)
113 2czl_A Hypothetical protein TT 81.2 3.2 0.00011 39.6 7.4 58 277-342 91-150 (272)
114 3hhf_B Transcriptional regulat 80.6 1.7 5.7E-05 39.0 4.9 65 82-163 21-85 (213)
115 4ef1_A Pheromone COB1/lipoprot 80.3 21 0.00073 33.7 12.5 38 86-133 21-58 (246)
116 2r9r_B Paddle chimera voltage 78.5 4.4 0.00015 43.1 7.9 56 212-267 373-430 (514)
117 2hxw_A Major antigenic peptide 76.3 15 0.00053 33.6 10.4 68 84-163 16-90 (237)
118 1nh8_A ATP phosphoribosyltrans 75.3 10 0.00034 37.1 8.8 100 274-386 121-224 (304)
119 2xxp_A CPS2A; replication, pep 72.6 4.1 0.00014 41.7 5.6 69 270-347 24-99 (398)
120 3ukm_A Potassium channel subfa 72.5 3.7 0.00013 39.8 5.0 63 213-275 200-271 (280)
121 1p99_A Hypothetical protein PG 70.9 32 0.0011 33.4 11.4 36 87-132 56-91 (295)
122 3szp_A Transcriptional regulat 70.8 5.3 0.00018 37.7 5.7 80 48-163 90-169 (291)
123 3muq_A Uncharacterized conserv 69.6 71 0.0024 29.8 13.2 75 80-165 18-95 (237)
124 3u65_B TP33 protein; tetratric 69.2 9.3 0.00032 37.9 7.3 102 272-385 145-251 (328)
125 4edp_A ABC transporter, substr 67.5 59 0.002 31.3 12.9 81 311-396 215-297 (351)
126 3cfz_A UPF0100 protein MJ1186; 66.4 63 0.0022 30.7 12.6 70 84-164 20-95 (292)
127 4ecf_A ABC-type phosphate tran 66.1 78 0.0027 29.8 13.0 72 82-164 17-91 (264)
128 3fd3_A Chromosome replication 61.2 80 0.0027 27.2 12.4 67 81-162 15-81 (208)
129 3lr1_A Tungstate ABC transport 59.8 6.8 0.00023 37.0 3.9 76 80-166 18-96 (236)
130 2qsx_A Putative transcriptiona 59.7 56 0.0019 29.1 10.3 79 48-162 18-96 (218)
131 3cfx_A UPF0100 protein MA_0280 59.5 1.2E+02 0.0041 28.7 15.3 70 84-164 20-95 (296)
132 3cij_A UPF0100 protein AF_0094 59.1 1.2E+02 0.0042 28.6 16.7 70 84-164 20-95 (295)
133 3isp_A HTH-type transcriptiona 58.9 30 0.001 32.8 8.6 54 97-163 119-172 (303)
134 3r6u_A Choline-binding protein 57.9 1E+02 0.0034 29.6 12.1 90 273-371 130-230 (284)
135 3mz1_A Putative transcriptiona 57.5 31 0.0011 32.2 8.5 66 81-163 101-166 (300)
136 1h3d_A ATP-phosphoribosyltrans 57.2 46 0.0016 32.4 9.4 100 274-386 116-218 (299)
137 3tqw_A Methionine-binding prot 56.6 75 0.0026 29.8 10.5 34 90-133 25-58 (240)
138 2klu_A T-cell surface glycopro 54.0 14 0.00047 27.0 3.7 18 427-444 12-29 (70)
139 3o66_A Glycine betaine/carniti 52.2 77 0.0026 30.4 10.2 66 273-343 129-202 (282)
140 3sya_A G protein-activated inw 50.6 28 0.00096 34.6 6.8 60 212-271 89-152 (340)
141 3cvg_A Putative metal binding 47.9 17 0.00059 35.0 4.8 75 81-165 33-116 (294)
142 3um7_A Potassium channel subfa 47.4 16 0.00055 35.9 4.4 53 213-265 114-168 (309)
143 3fxb_A Trap dicarboxylate tran 45.5 30 0.001 34.0 6.2 102 272-385 144-248 (326)
144 4euo_A ABC transporter, substr 45.3 2.1E+02 0.007 27.2 15.7 86 308-399 175-260 (320)
145 3um7_A Potassium channel subfa 44.6 32 0.0011 33.7 6.1 53 214-266 224-284 (309)
146 3cg1_A UPF0100 protein PF0080; 44.5 2.1E+02 0.007 26.9 13.4 69 85-164 21-100 (296)
147 3rvy_A ION transport protein; 42.7 31 0.0011 33.0 5.7 58 212-269 178-243 (285)
148 3spc_A Inward-rectifier K+ cha 42.5 53 0.0018 32.7 7.3 60 212-271 92-155 (343)
149 2vd3_A ATP phosphoribosyltrans 41.4 45 0.0016 32.2 6.5 100 274-385 106-207 (289)
150 2ks1_B Epidermal growth factor 41.2 36 0.0012 22.9 4.0 11 441-451 30-40 (44)
151 3kn3_A Putative periplasmic pr 35.1 17 0.00057 34.4 2.2 75 80-165 18-95 (242)
152 2b4l_A Glycine betaine-binding 33.2 64 0.0022 30.7 6.1 58 47-134 163-220 (268)
153 2jwa_A Receptor tyrosine-prote 32.1 1.1E+02 0.0039 20.4 5.6 21 431-451 19-39 (44)
154 4exl_A PBP 1, phosphate-bindin 31.6 85 0.0029 29.6 6.7 72 83-164 18-91 (265)
155 3hhg_A Transcriptional regulat 29.9 28 0.00096 32.9 3.0 80 48-163 92-171 (306)
156 4gd5_A Phosphate ABC transport 29.3 81 0.0028 29.8 6.2 71 85-165 53-123 (279)
157 1pc3_A Phosphate-binding prote 27.3 54 0.0018 32.5 4.6 71 84-164 42-114 (350)
158 3ukm_A Potassium channel subfa 27.1 79 0.0027 30.4 5.5 54 212-265 91-146 (280)
159 2k1k_A Ephrin type-A receptor 26.0 61 0.0021 21.0 3.0 13 435-447 24-36 (38)
160 3mwb_A Prephenate dehydratase; 25.1 1.6E+02 0.0056 28.7 7.4 85 284-373 6-101 (313)
161 2qmx_A Prephenate dehydratase; 24.1 2.1E+02 0.007 27.5 7.9 80 284-374 6-96 (283)
162 2qmw_A PDT, prephenate dehydra 22.2 2E+02 0.0067 27.4 7.2 82 285-374 4-98 (267)
163 1gtk_A Porphobilinogen deamina 21.8 5.5E+02 0.019 24.9 11.5 59 275-342 114-175 (313)
164 1ixh_A Phosphate-binding prote 21.7 77 0.0026 30.8 4.5 70 84-164 17-87 (321)
No 1
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=100.00 E-value=2.1e-55 Score=505.82 Aligned_cols=419 Identities=20% Similarity=0.363 Sum_probs=339.6
Q ss_pred CcceecCCCCCCceecCCCCcccCCccceecCCCCCCCCCCCccCCCCceEEEEecCCCCCcceEEEee--CCCCCCCce
Q 037841 1 RGIGFWTPEKGLTQKLSSNSTTKSKLKPIIWPGDSTSDPKGWEVPTNEKKLRIGVPVKKGFSYFVNVTI--DPKTQEPTS 78 (561)
Q Consensus 1 ~~~g~w~~~~g~~~~~~~~~~~~~~~~~~~wpg~~~~~p~~~~~~~~g~~LrVgv~~~~~~~pf~~~~~--d~~~~~~~~ 78 (561)
+.||+|++++|+....+ -...+++++|+|++.. ++||++... ++.++++ +
T Consensus 360 ~~vg~w~~~~g~~~~~~------------------------~~~~~~~~~l~v~~~~---~~P~~~~~~~~~~~~~~~-~ 411 (823)
T 3kg2_A 360 RKIGYWSEVDKMVLTED------------------------DTSGLEQKTVVVTTIL---ESPYVMMKANHAALAGNE-R 411 (823)
T ss_dssp EEEEEEETTTEEEECCC------------------------CCSSCCCCCEEEEECC---CTTTSEECTTGGGCCGGG-G
T ss_pred eeEEEEcCCCCceeccC------------------------cccccCCCEEEEEEec---CCCcEEEecCccccCCCC-c
Confidence 36899999999885431 0113568999999974 455666532 2224566 8
Q ss_pred EEEehHHHHHHHHHHCCCceeEEEEecCCCCCC---CCCCHHHHHHHHHcCcccEEEeceeeecCcceeeeccccccccc
Q 037841 79 VTGFCIDVFKAVIQELPYAVAYDFVPYGQPDGT---SSGSYNDLIYQVFLGEFDAAVGDITILLNRSNYVDFTLPYTESG 155 (561)
Q Consensus 79 ~~G~~idl~~~i~~~l~f~v~~~~v~~~~~~g~---~ngs~~~li~~l~~g~~D~~vg~~~it~~R~~~vdfT~p~~~~~ 155 (561)
+.|+++|+++++++++|+++++..++.+ .+|. .||+|++++++|.+|++|++++++++|++|.+.+|||.||+.++
T Consensus 412 ~~G~~~dl~~~~a~~l~~~~~~~~~~~~-~~g~~~~~~g~~~~~~~~l~~~~~D~~~~~~~~t~~R~~~~dfs~py~~~~ 490 (823)
T 3kg2_A 412 YEGYCVDLAAEIAKHCGFKYKLTIVGDG-KYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLG 490 (823)
T ss_dssp EESHHHHHHHHHHHHHTCCEEEEECSSC-CCCCBCTTTCCBCHHHHHHHTTSCSEECSCCBCCHHHHTTEEECSCSEEEC
T ss_pred eEEEHHHHHHHHHHHcCCcEEEEEccCC-cccccCCCCCchhhHHHhhccccCcEEecceecchhheeeEEeccchhhCC
Confidence 9999999999999999997777665533 2332 67899999999999999999999999999999999999999999
Q ss_pred eEEEEEccCCCCCCcceeccccchhhHHHHHHHHHHHHHHHhhhhcccCCCCCCC--------------ccCccchhHHH
Q 037841 156 VSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWALEHRVNEDFRGP--------------ARHQVGTSFWF 221 (561)
Q Consensus 156 ~~ivvp~~~~~~~~~~~fl~PF~~~vW~~~~~~~i~~~~v~~~l~~~~~~~~~~~--------------~~~~~~~~~~~ 221 (561)
+++++|++....++++.|++||++.+|++++++++++++++|+++|..+.+++.+ ...++.+++|+
T Consensus 491 ~~~~v~~~~~~~~~~~~fl~Pf~~~vW~~i~~~~~~~~~~l~~~~~~~p~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (823)
T 3kg2_A 491 ISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHTEEFEDGRETQSSESTNEFGIFNSLWF 570 (823)
T ss_dssp EEEEEECCCCCCCCGGGTTTTSCHHHHHHHHHHHHHHHTTGGGTC-----------------------CHHHHHHHHHHH
T ss_pred EEEEEECCCcccccchHhhcCCchhHHHHHHHHHHHHHHHHHHHHhcChhhccCcccccccccccccccccccHHHHHHH
Confidence 9999999887667899999999999999999999999999999998753332211 12357789999
Q ss_pred HHHHhhhcccc-ccccchhHHHHHHHHHHHHHHHHHhHhhheeeeEeeccCCCcCCHHHHHhCCC-eeEEEeCchHHHHH
Q 037841 222 SFSTMVFSQRE-RVISNLARFVVIVWYFVVLVLTQSYTASLTSLLTVQQLQPTITDVKMLIKRGD-NVGYQKGSFVLGIL 299 (561)
Q Consensus 222 ~~~~l~~~~~~-~~~s~~~Ril~~~w~~~~lil~~~Yta~LtS~Lt~~~~~~~I~sl~dL~~~~~-~vg~~~gs~~~~~l 299 (561)
+++++++++.. .|++.+.|+++++|++++||++++|+|+|+|+||++++.++|++++||.+++. ++|+..++...+++
T Consensus 571 ~~~~l~~~g~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~I~s~~dL~~~~~i~~~~~~~~~~~~~~ 650 (823)
T 3kg2_A 571 SLGAFMQQGADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLSKQTEIAYGTLDSGSTKEFF 650 (823)
T ss_dssp TTTTSCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSHHHHHCCSSEEECBSSSHHHHHH
T ss_pred HHHHHHhcCCCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCHHHHhhCCCeeEEEEeCCcHHHHH
Confidence 99999988854 67999999999999999999999999999999999999999999999997653 67777788888888
Q ss_pred HhcCCCc-----------cceeecCChHHHHHHhh-ccccCCceeEEeecchhHHHHHhcC-CcceEEeCcccccCceEE
Q 037841 300 KQLGFDE-----------RKLVVYNSPEECHELFQ-KGSANGGIAAAFEEIPYGKLLVGQH-CYKYTMVEPTFKTAGFGF 366 (561)
Q Consensus 300 ~~~~~~~-----------~~~~~~~s~~~~~~~l~-~g~~~~gv~a~i~~~~~~~~~l~~~-~~~l~~v~~~~~~~~~~~ 366 (561)
++..... ...+.+.+.+++++++. .+. .+|++.+.+.+.|+.++. |+ +.++++.+...++++
T Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~A~~~~~~~~~y~~~~~~c~-l~~v~~~~~~~~~~~ 725 (823)
T 3kg2_A 651 RRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKG----KYAYLLESTMNEYIEQRKPCD-TMKVGGNLDSKGYGI 725 (823)
T ss_dssp HHCCCHHHHHHHHHHHHCSSCCCBSSHHHHHHHHHTTTT----SEEEEEEHHHHHHHHTSTTCC-EEEESCCSSCEEECC
T ss_pred HhccchHHHHHHHHHHhcCCccccCCHHHHHHHHhccCC----ceEEEechHHHHHHHhcCCCc-eEEccccccccceeE
Confidence 7643221 01124568899999996 333 689999999999888776 96 889999999999999
Q ss_pred EecCCCCChhhHHHHHhhccccchhHHHHHHHcccCCCCCCCCC--ccccccccccchhHHHHHHHHHHHHHHHHHHHHH
Q 037841 367 AFPLHSPLVHDVSKAILSVTEGDKMKEIEDAWFKKHSSCPDAST--VVSSRSLGLNSFWGLFLIAGIAAILALIIFLAVF 444 (561)
Q Consensus 367 ~~~k~spl~~~in~~Il~l~e~G~~~~i~~kw~~~~~~c~~~~~--~~~~~~L~l~~~~g~F~il~~g~~lallvfl~E~ 444 (561)
++||||||++.||++|+++.|+|++++|.++|+.+...|..... ..+..+|+++++.|+|+++++|+++|+++|++|+
T Consensus 726 ~~~k~spl~~~~~~~il~l~e~G~~~~~~~~w~~~~~~c~~~~~~~~~~~~~L~l~~l~g~f~il~~g~~la~~vf~~E~ 805 (823)
T 3kg2_A 726 ATPKGSSLGTPVNLAVLKLSEQGLLDKLKNKWWYDKGECGAKDSGSKEKTSALSLSNVAGVFYILVGGLGLAMLVALIEF 805 (823)
T ss_dssp EEETTCSSHHHHHHHHHHHHHTTHHHHHHHHHHTTSCSCSSTTTSTTTCCCSCCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecCCChHHHHHHHHHHHHHhCCcHHHHHHhhCcCCCCCCCCCccccccCCccchhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988888987542 2466799999999999999999999999999999
Q ss_pred HHHhhcccc
Q 037841 445 VGQHRNVLR 453 (561)
Q Consensus 445 ~~~~~~~~~ 453 (561)
+|+++++++
T Consensus 806 ~~~~~~~~~ 814 (823)
T 3kg2_A 806 CYKSRAEAK 814 (823)
T ss_dssp HHC------
T ss_pred HHHcchhhh
Confidence 998877654
No 2
>1yae_A Glutamate receptor, ionotropic kainate 2; kainate receptor, membrane protein; HET: NAG FUC DOQ; 3.11A {Rattus norvegicus} SCOP: c.94.1.1
Probab=99.95 E-value=1.4e-27 Score=242.92 Aligned_cols=278 Identities=19% Similarity=0.368 Sum_probs=195.5
Q ss_pred CCCCceEEEEecCCCCCcceEEEeeC--CCCCCCceEEEehHHHHHHHHHHCCCceeEEEEecCCCCCCC---CCCHHHH
Q 037841 45 PTNEKKLRIGVPVKKGFSYFVNVTID--PKTQEPTSVTGFCIDVFKAVIQELPYAVAYDFVPYGQPDGTS---SGSYNDL 119 (561)
Q Consensus 45 ~~~g~~LrVgv~~~~~~~pf~~~~~d--~~~~~~~~~~G~~idl~~~i~~~l~f~v~~~~v~~~~~~g~~---ngs~~~l 119 (561)
..++++||||+.. ++||.+.+.. ..++++ ++.|+++||++++++++|+++++..++.+ .+|.. +++|+++
T Consensus 9 i~~~~~l~V~~~~---~~P~~~~~~~~~~~~~~g-~~~G~~vdl~~~ia~~lg~~~~~~~~~~~-~~g~~~~~~~~~~~~ 83 (312)
T 1yae_A 9 SLSNRSLIVTTIL---EEPYVLFKKSDKPLYGND-RFEGYCIDLLRELSTILGFTYEIRLVEDG-KYGAQDDVNGQWNGM 83 (312)
T ss_dssp TTCSCEEEEEECC---BTTTBEECCCSSCCCGGG-GEESHHHHHHHHHHHHHCCEEEEEECSSC-CCCCBCTTTCCBCSH
T ss_pred hhcCceEEEEEec---cCCeeEEeccccccCCCc-eEEEEEHHHHHHHHHHcCCeEEEEecCCC-ccceeccCCCcchHH
Confidence 3567899999983 4778876520 111345 89999999999999999986555544432 23331 5789999
Q ss_pred HHHHHcCcccEEEeceeeecCcceeeeccccccccceEEEEEccCCCCCCcceeccccchhhHHHHHHHHHHHHHHHhhh
Q 037841 120 IYQVFLGEFDAAVGDITILLNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWAL 199 (561)
Q Consensus 120 i~~l~~g~~D~~vg~~~it~~R~~~vdfT~p~~~~~~~ivvp~~~~~~~~~~~fl~PF~~~vW~~~~~~~i~~~~v~~~l 199 (561)
+.+|.+|++|++++++++|++|.+.++||.||+.++.+++++++.....++|.|+.||+..
T Consensus 84 ~~~l~~g~~D~~~~~~~~t~eR~~~~~fs~py~~~~~~~~~~~~~~~~~~~~~~~~pf~~~------------------- 144 (312)
T 1yae_A 84 VRELIDHKADLAVAPLAITYVREKVIDFSKPFMTLGISILYRKPNGTNPGVFSFLNGGSLV------------------- 144 (312)
T ss_dssp HHHHHTTSCSEECSSCBCCHHHHHHEEEEEEEEEECEEEEEEC-------------------------------------
T ss_pred HHHHhCCCcCEEeecceechhhcceEEecceeeecceEEEEeCCccccccceeeecccccC-------------------
Confidence 9999999999999989999999999999999999999999998765557899999999910
Q ss_pred hcccCCCCCCCccCccchhHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHhHhhheeeeEeeccCCCcCCHHH
Q 037841 200 EHRVNEDFRGPARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWYFVVLVLTQSYTASLTSLLTVQQLQPTITDVKM 279 (561)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~Ril~~~w~~~~lil~~~Yta~LtS~Lt~~~~~~~I~sl~d 279 (561)
|+ |+++....|++++|
T Consensus 145 ----------------------------------p~------------------------------tv~~~~~~i~~~~d 160 (312)
T 1yae_A 145 ----------------------------------PR------------------------------GSERMESPIDSADD 160 (312)
T ss_dssp --------------------------------------------------------------------------CCSHHH
T ss_pred ----------------------------------Cc------------------------------ccccccCCCCCHHH
Confidence 00 45666677999999
Q ss_pred HHhCCC---eeEEEeCchHHHHHHhcCCC-----------ccceeecCChHHHHHHhhccccCCceeEEeecchhHHHHH
Q 037841 280 LIKRGD---NVGYQKGSFVLGILKQLGFD-----------ERKLVVYNSPEECHELFQKGSANGGIAAAFEEIPYGKLLV 345 (561)
Q Consensus 280 L~~~~~---~vg~~~gs~~~~~l~~~~~~-----------~~~~~~~~s~~~~~~~l~~g~~~~gv~a~i~~~~~~~~~l 345 (561)
|. |+ ++|+..++....++.+..++ ..+++.+.+.++++++|..|+ ||++.+...+.+++
T Consensus 161 L~--g~~~~~vg~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~-----Da~i~~~~~~~~~~ 233 (312)
T 1yae_A 161 LA--KQTKIEYGAVEDGATMTFFKKSKISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSD-----YAFLMESTTIEFVT 233 (312)
T ss_dssp HH--TCSSSEEECBTTSHHHHHHHHCCBHHHHHHHHHHHHTHHHHCBSSHHHHHHHHHHSS-----EEEEEEHHHHHHHH
T ss_pred Hh--hccCceEEEEeCChHHHHHHhccCchHHHHHHHHHhcCCCcccCCHHHHHHHHHcCC-----cEEEeccHHHHHHH
Confidence 96 54 79977776667777654332 124577889999999999987 88999999999999
Q ss_pred hcCCcceEEeCcccccCceEEEecCCCCChhhHHHHHhhccccchhHHHHHHHcccCCCCCCCCCcccccccccc
Q 037841 346 GQHCYKYTMVEPTFKTAGFGFAFPLHSPLVHDVSKAILSVTEGDKMKEIEDAWFKKHSSCPDASTVVSSRSLGLN 420 (561)
Q Consensus 346 ~~~~~~l~~v~~~~~~~~~~~~~~k~spl~~~in~~Il~l~e~G~~~~i~~kw~~~~~~c~~~~~~~~~~~L~l~ 420 (561)
+++|+ +.++++.+...+++++++|++||++.||++|.++.++|.+++|.+||++. ..|...... +...++++
T Consensus 234 ~~~~~-l~~~~~~~~~~~~~~a~~k~~~l~~~in~~l~~l~~~G~~~~i~~kw~~~-~~c~~~~~~-~~~~~~~~ 305 (312)
T 1yae_A 234 QRNCN-LTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHMMKEKWWRG-NGCPEEESK-EASALGVQ 305 (312)
T ss_dssp TTCTT-EEEESSCSSCEEEEEEEETTCSSHHHHHHHHHHHHHHTHHHHHHHHHHCC-SCC---------------
T ss_pred hcCCC-EEEecccccccceEEEEeCCCCcHHHHHHHHHHHHHcCCHHHHHhhhcCC-CCCCCCCCc-cchhhhhh
Confidence 88885 88998888888899999999999999999999999999999999999975 589875432 44444443
No 3
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ...
Probab=99.93 E-value=1.2e-25 Score=221.53 Aligned_cols=238 Identities=21% Similarity=0.385 Sum_probs=195.2
Q ss_pred CCceEEEEecCCCCCcceEEEeeC--CCCCCCceEEEehHHHHHHHHHHCCCceeEEEEecCCCCCC---CCCCHHHHHH
Q 037841 47 NEKKLRIGVPVKKGFSYFVNVTID--PKTQEPTSVTGFCIDVFKAVIQELPYAVAYDFVPYGQPDGT---SSGSYNDLIY 121 (561)
Q Consensus 47 ~g~~LrVgv~~~~~~~pf~~~~~d--~~~~~~~~~~G~~idl~~~i~~~l~f~v~~~~v~~~~~~g~---~ngs~~~li~ 121 (561)
++++||||+. .++||.+.+.+ +.++++ ++.|+++||++++++++|++++++.++.+. .|. .+++|++++.
T Consensus 2 ~~~~l~v~~~---~~~P~~~~~~~~~~~~~~g-~~~G~~vdl~~~ia~~lg~~~~~~~~p~~~-~g~~~~~~~~~~~~~~ 76 (259)
T 3g3k_A 2 SNRSLIVTTI---LEEPYVLFKKSDKPLYGND-RFEGYCIDLLRELSTHLGFTYEIRLVEDGK-YGAQDDVNGQWNGMVR 76 (259)
T ss_dssp -CCCEEEEEC---CBTTTBEECCCSSCCCGGG-GEESHHHHHHHHHHHHHTCCEEEEECTTCC-CCCBCTTTCCBCHHHH
T ss_pred CCcEEEEEEe---cCCCeEEEeecccccCCCc-eeeeEHHHHHHHHHHHcCCeEEEEECCCCC-cCcccCCCCcchHHHH
Confidence 3688999997 34677877643 122356 999999999999999999977776665432 222 1468999999
Q ss_pred HHHcCcccEEEeceeeecCcceeeeccccccccceEEEEEccCCCCCCcceeccccchhhHHHHHHHHHHHHHHHhhhhc
Q 037841 122 QVFLGEFDAAVGDITILLNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWALEH 201 (561)
Q Consensus 122 ~l~~g~~D~~vg~~~it~~R~~~vdfT~p~~~~~~~ivvp~~~~~~~~~~~fl~PF~~~vW~~~~~~~i~~~~v~~~l~~ 201 (561)
+|.+|++|++++++++|++|.+.++||.||+.++.+++++++..
T Consensus 77 ~l~~g~~D~~~~~~~~t~eR~~~~~fs~py~~~~~~~~~~~~~~------------------------------------ 120 (259)
T 3g3k_A 77 ELIDHKADLAVAPLAITYVREEVIDFSKPFMTLGISILYRKGTP------------------------------------ 120 (259)
T ss_dssp HHHTTSCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEESSSS------------------------------------
T ss_pred HHhcCcccEEEeeeEecccccceEeeeeeeeeCCEEEEEeCCcc------------------------------------
Confidence 99999999999999999999999999999999999999986542
Q ss_pred ccCCCCCCCccCccchhHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHhHhhheeeeEeeccCCCcCCHHHHH
Q 037841 202 RVNEDFRGPARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWYFVVLVLTQSYTASLTSLLTVQQLQPTITDVKMLI 281 (561)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~Ril~~~w~~~~lil~~~Yta~LtS~Lt~~~~~~~I~sl~dL~ 281 (561)
|++++||.
T Consensus 121 ------------------------------------------------------------------------i~~~~dL~ 128 (259)
T 3g3k_A 121 ------------------------------------------------------------------------IDSADDLA 128 (259)
T ss_dssp ------------------------------------------------------------------------CCSHHHHH
T ss_pred ------------------------------------------------------------------------ccCHHHhc
Confidence 68999995
Q ss_pred hCCC---eeEEEeCchHHHHHHhcCCCc-----------cceeecCChHHHHHHhhccccCCceeEEeecchhHHHHHhc
Q 037841 282 KRGD---NVGYQKGSFVLGILKQLGFDE-----------RKLVVYNSPEECHELFQKGSANGGIAAAFEEIPYGKLLVGQ 347 (561)
Q Consensus 282 ~~~~---~vg~~~gs~~~~~l~~~~~~~-----------~~~~~~~s~~~~~~~l~~g~~~~gv~a~i~~~~~~~~~l~~ 347 (561)
|+ .+|+..++...+++.+..... ..++.+++.++++++|..|+ +|++.+...+.+++++
T Consensus 129 --g~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~-----da~i~~~~~~~~~~~~ 201 (259)
T 3g3k_A 129 --KQTKIEYGAVEDGATMTFFKRSKISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSD-----YAFLMESTTIEFVTQR 201 (259)
T ss_dssp --TCSSSEEEEETTSHHHHHHHHCCSHHHHHHHHHHHHTHHHHEESSHHHHHHHHHHSS-----EEEEEEHHHHHHHHHH
T ss_pred --cCCCceEEEecCcHHHHHHhhccchhHHHHHHHHHhcCCCcccCCHHHHHHHHHhCC-----eEEEechHHHHHHhcC
Confidence 44 388888888888887643321 23467889999999999997 7899999999999888
Q ss_pred CCcceEEeCcccccCceEEEecCCCCChhhHHHHHhhccccchhHHHHHHHcccCCCCC
Q 037841 348 HCYKYTMVEPTFKTAGFGFAFPLHSPLVHDVSKAILSVTEGDKMKEIEDAWFKKHSSCP 406 (561)
Q Consensus 348 ~~~~l~~v~~~~~~~~~~~~~~k~spl~~~in~~Il~l~e~G~~~~i~~kw~~~~~~c~ 406 (561)
.|+ +.+++..+...+++++++|++||+..||++|.+|.++|.+++|.++|++ ...|+
T Consensus 202 ~~~-l~~~~~~~~~~~~~~a~~k~~~l~~~in~~l~~l~~~G~~~~i~~kw~~-~~~c~ 258 (259)
T 3g3k_A 202 NCN-LTQIGGLIDSKGYGVGTPMGSPYRDKITLAILKLQEQGKLHMMKEKWWR-GNGCP 258 (259)
T ss_dssp CTT-EEEESSCSSCEEECCEEETTCTHHHHHHHHHHHHHHTC-CHHHHHHHHC-C--CC
T ss_pred Cce-EEEecccceeeeEEEEECCCCccHHHHHHHHHHHHhcChHHHHHHhhcC-CCCCC
Confidence 885 8899988888899999999999999999999999999999999999997 45586
No 4
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A*
Probab=99.93 E-value=3.1e-25 Score=217.14 Aligned_cols=224 Identities=21% Similarity=0.273 Sum_probs=191.5
Q ss_pred CceEEEEecCCCCCcceEEEeeCCCCCCCceEEEehHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCc
Q 037841 48 EKKLRIGVPVKKGFSYFVNVTIDPKTQEPTSVTGFCIDVFKAVIQELPYAVAYDFVPYGQPDGTSSGSYNDLIYQVFLGE 127 (561)
Q Consensus 48 g~~LrVgv~~~~~~~pf~~~~~d~~~~~~~~~~G~~idl~~~i~~~l~f~v~~~~v~~~~~~g~~ngs~~~li~~l~~g~ 127 (561)
.++|+||+. ++|+||.+.+. .++++ ++.||++||++++++++|+ ++++++ .+|++++.+|.+|+
T Consensus 11 ~g~L~Vg~~--~~~pP~~~~~~--~d~~g-~~~G~~vdl~~~ia~~lg~--~~~~~~---------~~~~~~~~~l~~g~ 74 (243)
T 4h5g_A 11 KGKLVVATS--PDYAPFEFQSL--VDGKN-QVVGADIDMAQAIADELGV--KLEILS---------MSFDNVLTSLQTGK 74 (243)
T ss_dssp HTEEEEEEC--CCBTTTBEEEE--ETTEE-EEESHHHHHHHHHHHHHTS--EEEEEE---------CCGGGHHHHHHTTS
T ss_pred CCEEEEEEC--CCCCCcEeeec--cCCCC-cEEEeHHHHHHHHHHHhCC--ceEEec---------ccHHHHHHHHHcCC
Confidence 368999997 78999988542 12456 8999999999999999997 555555 25999999999999
Q ss_pred ccEEEeceeeecCcceeeeccccccccceEEEEEccCCCCCCcceeccccchhhHHHHHHHHHHHHHHHhhhhcccCCCC
Q 037841 128 FDAAVGDITILLNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWALEHRVNEDF 207 (561)
Q Consensus 128 ~D~~vg~~~it~~R~~~vdfT~p~~~~~~~ivvp~~~~~~~~~~~fl~PF~~~vW~~~~~~~i~~~~v~~~l~~~~~~~~ 207 (561)
+|++++++++|++|.+.++||.||+.++.++++++.+...
T Consensus 75 ~d~~~~~~~~t~eR~~~~~fs~py~~~~~~~~v~~~~~~~---------------------------------------- 114 (243)
T 4h5g_A 75 ADLAVAGISATDERKEVFDFSIPYYENKISFLVHKADVEK---------------------------------------- 114 (243)
T ss_dssp CSEECSSCBCCHHHHTTEEECSCSBCCCEEEEEEGGGTTT----------------------------------------
T ss_pred CCcccccccCChhHccEEEccCccccCccccccccccccc----------------------------------------
Confidence 9999999999999999999999999999999998765432
Q ss_pred CCCccCccchhHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHhHhhheeeeEeeccCCCcCCHHHHHhCCCee
Q 037841 208 RGPARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWYFVVLVLTQSYTASLTSLLTVQQLQPTITDVKMLIKRGDNV 287 (561)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~Ril~~~w~~~~lil~~~Yta~LtS~Lt~~~~~~~I~sl~dL~~~~~~v 287 (561)
+++++|| .|++|
T Consensus 115 ------------------------------------------------------------------~~~~~dl--~g~~i 126 (243)
T 4h5g_A 115 ------------------------------------------------------------------YKDLTSL--ESANI 126 (243)
T ss_dssp ------------------------------------------------------------------CCSHHHH--HTSEE
T ss_pred ------------------------------------------------------------------ccccccC--CCCEE
Confidence 7899999 59999
Q ss_pred EEEeCchHHHHHHhcCCCccceeecCChHHHHHHhhccccCCceeEEeecchhHHHHHhcCCc-ceEEe-CcccccCceE
Q 037841 288 GYQKGSFVLGILKQLGFDERKLVVYNSPEECHELFQKGSANGGIAAAFEEIPYGKLLVGQHCY-KYTMV-EPTFKTAGFG 365 (561)
Q Consensus 288 g~~~gs~~~~~l~~~~~~~~~~~~~~s~~~~~~~l~~g~~~~gv~a~i~~~~~~~~~l~~~~~-~l~~v-~~~~~~~~~~ 365 (561)
|+..|+....++++. ++..+++.+++.++++++|..|+ +|+++.+...+.+++.++.. .+..+ .......+++
T Consensus 127 ~v~~g~~~~~~l~~~-~~~~~i~~~~~~~~~~~~l~~Gr----vD~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (243)
T 4h5g_A 127 AAQKGTVPESMVKEQ-LPKAQLTSLTNMGEAVNELQAGK----IDAVHMDEPVALSYAAKNAGLAVATVSLKMKDGDANA 201 (243)
T ss_dssp EEETTSHHHHHHHHH-CTTSEEEEESCHHHHHHHHHHTS----CSEEEEEHHHHHHHHHHCTTEEECSCCCCCCSSCCBC
T ss_pred EecCCcHHHHHHHHh-cccceeEEeCCHHHHHHHHHcCC----ccEEEecHHHHHHHHHHCCCCceeeccCCcccCceEE
Confidence 999999999988774 56778999999999999999999 99999999998888887753 12222 3444556789
Q ss_pred EEecCCCC-ChhhHHHHHhhccccchhHHHHHHHcc
Q 037841 366 FAFPLHSP-LVHDVSKAILSVTEGDKMKEIEDAWFK 400 (561)
Q Consensus 366 ~~~~k~sp-l~~~in~~Il~l~e~G~~~~i~~kw~~ 400 (561)
++++|++| |++.||++|.+|.++|.+++|.+||+.
T Consensus 202 ~a~~k~~~~L~~~~n~aL~~l~~dG~~~~i~~Kw~~ 237 (243)
T 4h5g_A 202 VALRKNSDDLKEVVDKVIQKLKDEGTYQSYLEKAAS 237 (243)
T ss_dssp CEEESSCHHHHHHHHHHHHHHHHHTHHHHHHHHHTT
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 99999998 999999999999999999999999985
No 5
>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* 3oen_A* 3oel_A* 3oem_A* 3oek_A*
Probab=99.92 E-value=1.7e-26 Score=231.93 Aligned_cols=251 Identities=21% Similarity=0.340 Sum_probs=189.4
Q ss_pred cCCCCceEEEEecCCCCCcceEEEeeCCCCCCCceEEEehHHHHHHHHHHCCCceeEEEEecCCCCCC-CCCCHHHHHHH
Q 037841 44 VPTNEKKLRIGVPVKKGFSYFVNVTIDPKTQEPTSVTGFCIDVFKAVIQELPYAVAYDFVPYGQPDGT-SSGSYNDLIYQ 122 (561)
Q Consensus 44 ~~~~g~~LrVgv~~~~~~~pf~~~~~d~~~~~~~~~~G~~idl~~~i~~~l~f~v~~~~v~~~~~~g~-~ngs~~~li~~ 122 (561)
.|.+|++|||||+..++|++|.... ++.++.+ ++.|+++|+++++++++|+++++..++. ..+|. .+++|++++.+
T Consensus 24 ~~~~~~~lrvgv~~~~~~~~~~~~~-~~~~~~~-~~~G~~~dl~~~i~~~lg~~~~~~~~~~-~~~g~~~~~~~~~~~~~ 100 (284)
T 2a5s_A 24 DPLTETCVRNTVPCRKFVKINNSTN-EGMNVKK-CCKGFCIDILKKLSRTVKFTYDLYLVTN-GKHGKKVNNVWNGMIGE 100 (284)
T ss_dssp CCC-CCCCTTCEEEEEEEESSSSSS-CEEEEEE-EEESHHHHHHHHHHHHHTCCEEEEECCS-SSSCCEETTEECHHHHH
T ss_pred CCCCCcccccccccccccccccccc-CCCCCcc-eeeEEhHHHHHHHHHHCCCCEEEEEccC-CccCcccCCCHHHHHHH
Confidence 3467888888888777777664321 1112234 6899999999999999998555544332 22333 46789999999
Q ss_pred HHcCcccEEEeceeeecCcceeeeccccccccceEEEEEccCCCCCCcceeccccchhhHHHHHHHHHHHHHHHhhhhcc
Q 037841 123 VFLGEFDAAVGDITILLNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWALEHR 202 (561)
Q Consensus 123 l~~g~~D~~vg~~~it~~R~~~vdfT~p~~~~~~~ivvp~~~~~~~~~~~fl~PF~~~vW~~~~~~~i~~~~v~~~l~~~ 202 (561)
|.+|++|+++++++++++|.+.++||.||+.++.+++++++.... .+.
T Consensus 101 l~~g~~D~~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~~~~-~~~------------------------------- 148 (284)
T 2a5s_A 101 VVYQRAVMAVGSLTINEERSEVVDFSVPFVETGISVMVSRGTQVT-GLS------------------------------- 148 (284)
T ss_dssp HHTTSCSEECSSCBCCHHHHTTEEECCCCEEECEEEEEETTCCCC-STT-------------------------------
T ss_pred HhcCCcCEEEEEEEEeccccceEEeccCchhcCEEEEEECCcccc-ccc-------------------------------
Confidence 999999999999999999999999999999999999999664311 000
Q ss_pred cCCCCCCCccCccchhHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHhHhhheeeeEeeccCCCcCCHHHHHh
Q 037841 203 VNEDFRGPARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWYFVVLVLTQSYTASLTSLLTVQQLQPTITDVKMLIK 282 (561)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~Ril~~~w~~~~lil~~~Yta~LtS~Lt~~~~~~~I~sl~dL~~ 282 (561)
+ ...++++||.
T Consensus 149 ---d-----------------------------------------------------------------l~~~~~~~l~- 159 (284)
T 2a5s_A 149 ---D-----------------------------------------------------------------KKFQRPHDYS- 159 (284)
T ss_dssp ---S-----------------------------------------------------------------HHHHSGGGSS-
T ss_pred ---c-----------------------------------------------------------------cccCChhHcC-
Confidence 0 0012334441
Q ss_pred CCCeeEEEeCchHHHHHHhcCCCcc--ceeec--CChHHHHHHhhccccCCceeEEeecchhHHHHHhcC--CcceEEeC
Q 037841 283 RGDNVGYQKGSFVLGILKQLGFDER--KLVVY--NSPEECHELFQKGSANGGIAAAFEEIPYGKLLVGQH--CYKYTMVE 356 (561)
Q Consensus 283 ~~~~vg~~~gs~~~~~l~~~~~~~~--~~~~~--~s~~~~~~~l~~g~~~~gv~a~i~~~~~~~~~l~~~--~~~l~~v~ 356 (561)
.+.++|+..++...+.+.+. ++.. +++.+ .+.++++++|..|+ +||++.+...+.++++++ |+ +.+++
T Consensus 160 ~~~~vg~v~~~s~~~~l~~~-~~~~~~~i~~~~~~~~~~~l~~l~~G~----vDa~i~d~~~~~~~~~~~~~~~-l~~~~ 233 (284)
T 2a5s_A 160 PPFRFGTVPNGSTERNIRNN-YPYMHQYMTRFNQRGVEDALVSLKTGK----LDAFIYDAAVLNYKAGRDEGCK-LVTIG 233 (284)
T ss_dssp SCCCEECCTTSHHHHHHHTT-CHHHHHHHGGGCCSSHHHHHHHHHTTS----CSEEEEEHHHHHHHHHTCTTSC-EEEEE
T ss_pred CCceEEEEeCCchHHHHHHH-HHHHHHHHHhccCCCHHHHHHHHHcCC----eeEEEEchHHHHHHHhcCCCCC-EEEeC
Confidence 26789976655556666542 3322 34555 78999999999999 999999999999999876 65 77773
Q ss_pred --cccccCceEEEecCCCCChhhHHHHHhhccccchhHHHHHHHcccCCCCC
Q 037841 357 --PTFKTAGFGFAFPLHSPLVHDVSKAILSVTEGDKMKEIEDAWFKKHSSCP 406 (561)
Q Consensus 357 --~~~~~~~~~~~~~k~spl~~~in~~Il~l~e~G~~~~i~~kw~~~~~~c~ 406 (561)
..+...+++++++|+++|++.||++|.++.++|.+++|.++|+. ..|.
T Consensus 234 ~~~~~~~~~~~~a~~k~~~l~~~ln~~l~~l~~~g~~~~i~~kw~~--~~c~ 283 (284)
T 2a5s_A 234 SGYIFATTGYGIALQKGSPWKRQIDLALLQFVGDGEMEELETLWLT--GICH 283 (284)
T ss_dssp CCCGGGCEEECCEEETTCTTHHHHHHHHHHHHHHTHHHHHHHHHTC--CCCC
T ss_pred CccccccCceEEEecCCCHHHHHHHHHHHHHHhCChHHHHHHHhhh--ccCC
Confidence 56777889999999999999999999999999999999999995 3675
No 6
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A
Probab=99.92 E-value=2.5e-25 Score=217.85 Aligned_cols=224 Identities=15% Similarity=0.196 Sum_probs=185.5
Q ss_pred CCceEEEEecCCCCCcceEEEeeCCCCCCCceEEEehHHHHHHHHHHC-CCceeEEEEecCCCCCCCCCCHHHHHHHHHc
Q 037841 47 NEKKLRIGVPVKKGFSYFVNVTIDPKTQEPTSVTGFCIDVFKAVIQEL-PYAVAYDFVPYGQPDGTSSGSYNDLIYQVFL 125 (561)
Q Consensus 47 ~g~~LrVgv~~~~~~~pf~~~~~d~~~~~~~~~~G~~idl~~~i~~~l-~f~v~~~~v~~~~~~g~~ngs~~~li~~l~~ 125 (561)
+.++|+||+. ++|+||.+.+. ++ ++.|+++||+++++++| |+ ++++++ .+|.+++.+|.+
T Consensus 7 ~~~tl~vg~~--~~~pP~~~~d~-----~G-~~~G~~vdl~~~ia~~l~g~--~~~~~~---------~~~~~~~~~l~~ 67 (243)
T 4gvo_A 7 KVQTITVGTG--TQFPNVCFLDE-----NG-KLTGYDVELVKEIDKRLPGY--KFKFKT---------MDFSNLLVSLGA 67 (243)
T ss_dssp -CEEEEEEEC--SEETTTEEECT-----TS-CEESHHHHHHHHHHHTCTTE--EEEEEE---------CCGGGHHHHHHT
T ss_pred cCCeEEEEEC--CCCCCeEEECC-----CC-cEEEhHHHHHHHHHHhccCC--eEEEEE---------CCHHHHHHHHHC
Confidence 4578999997 78999999863 45 89999999999999998 76 555555 259999999999
Q ss_pred CcccEEEeceeeecCcceeeeccccccccceEEEEEccCCCCCCcceeccccchhhHHHHHHHHHHHHHHHhhhhcccCC
Q 037841 126 GEFDAAVGDITILLNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWALEHRVNE 205 (561)
Q Consensus 126 g~~D~~vg~~~it~~R~~~vdfT~p~~~~~~~ivvp~~~~~~~~~~~fl~PF~~~vW~~~~~~~i~~~~v~~~l~~~~~~ 205 (561)
|++|++++++++|++|.+.++||.||+.....+++.++....
T Consensus 68 g~~D~~~~~~~~t~eR~~~~~fs~p~~~~~~~~~~~~~~~~~-------------------------------------- 109 (243)
T 4gvo_A 68 GKVDIVAHQMEKSKEREKKFLFNDVAYNNFPLQLTVLDSNNS-------------------------------------- 109 (243)
T ss_dssp TSCSEECSCCBCCHHHHHHSEECSSCCEECCEEEEEETTCCS--------------------------------------
T ss_pred CCCCEecccCCCCHHHhhhhhhhhhhcccccceEEEeccccc--------------------------------------
Confidence 999999999999999999999999977765554444343322
Q ss_pred CCCCCccCccchhHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHhHhhheeeeEeeccCCCcCCHHHHHhCCC
Q 037841 206 DFRGPARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWYFVVLVLTQSYTASLTSLLTVQQLQPTITDVKMLIKRGD 285 (561)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~Ril~~~w~~~~lil~~~Yta~LtS~Lt~~~~~~~I~sl~dL~~~~~ 285 (561)
+++++|| .|+
T Consensus 110 --------------------------------------------------------------------~~~~~dL--~g~ 119 (243)
T 4gvo_A 110 --------------------------------------------------------------------INSTKDL--AGK 119 (243)
T ss_dssp --------------------------------------------------------------------CSSGGGG--TTC
T ss_pred --------------------------------------------------------------------cCchHHh--cCC
Confidence 7899999 699
Q ss_pred eeEEEeCchHHHHHHh----cCCCccceeecCChHHHHHHhhccccCCceeEEeecchhHHHHHhcCCcceEEeCccccc
Q 037841 286 NVGYQKGSFVLGILKQ----LGFDERKLVVYNSPEECHELFQKGSANGGIAAAFEEIPYGKLLVGQHCYKYTMVEPTFKT 361 (561)
Q Consensus 286 ~vg~~~gs~~~~~l~~----~~~~~~~~~~~~s~~~~~~~l~~g~~~~gv~a~i~~~~~~~~~l~~~~~~l~~v~~~~~~ 361 (561)
+||+..|+....++++ .+........+.+.++++++|..|+ +||++.+...+.++.++...++.++++.+..
T Consensus 120 ~v~v~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Gr----vDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (243)
T 4gvo_A 120 RVITSATSNGALVLKKINEEQGNNFEIAYEGQGSNDTANQLKTGR----ADATISTPFAVDFQNKTSAIKEKVVGDVLSN 195 (243)
T ss_dssp EEEECTTCHHHHHHHHHHHHTTSCSEEEECCSGGGSHHHHHHHTS----CSBEEECHHHHHHHHHTCSSCEEEEEEEEEC
T ss_pred eEEEecCchHHHHHHHHHHhccccceeccccCChHHHHHHHHcCC----ccEEEccHHHHHHHHhhCCCceEEeccCCCC
Confidence 9999999877766654 2222223345678889999999999 9999999998888888775457788888888
Q ss_pred CceEEEecCCCC-ChhhHHHHHhhccccchhHHHHHHHccc
Q 037841 362 AGFGFAFPLHSP-LVHDVSKAILSVTEGDKMKEIEDAWFKK 401 (561)
Q Consensus 362 ~~~~~~~~k~sp-l~~~in~~Il~l~e~G~~~~i~~kw~~~ 401 (561)
.+++++++|++| |++.||++|.+|.++|.+++|.+|||+.
T Consensus 196 ~~~~~~~~k~~~~l~~~in~~l~~l~~~G~~~~i~~kw~g~ 236 (243)
T 4gvo_A 196 AKVYFMLGKDETKLSKKVDEALQSIIDDGTLKKLSEKWLGA 236 (243)
T ss_dssp CEECCEECTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHCG
T ss_pred CcEEEEEeCCCHHHHHHHHHHHHHHHhCcHHHHHHHHHCCC
Confidence 899999999988 9999999999999999999999999964
No 7
>2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane, ionotropic glutamate receptors, transmembrane, membrane protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A
Probab=99.92 E-value=1.2e-24 Score=214.68 Aligned_cols=241 Identities=22% Similarity=0.298 Sum_probs=188.6
Q ss_pred CCceEEEEecCCCCCcceEEEeeCCCCCCCceEEEehHHHHHHHHHHCCCceeEEEEecCCCCCC--CCCCHHHHHHHHH
Q 037841 47 NEKKLRIGVPVKKGFSYFVNVTIDPKTQEPTSVTGFCIDVFKAVIQELPYAVAYDFVPYGQPDGT--SSGSYNDLIYQVF 124 (561)
Q Consensus 47 ~g~~LrVgv~~~~~~~pf~~~~~d~~~~~~~~~~G~~idl~~~i~~~l~f~v~~~~v~~~~~~g~--~ngs~~~li~~l~ 124 (561)
+|++||||+. +++||.+.+.+..+..+ ++.|+++||++++++++|+++++...+.+ .+|. .+++|++++.+|.
T Consensus 1 ~~~~l~v~~~---~~pP~~~~~~~~~g~~g-~~~G~~~dl~~~i~~~lg~~~~~~~~~~~-~~g~~~~~~~~~~~~~~l~ 75 (265)
T 2v3u_A 1 GGVVLRVVTV---LEEPFVMVSENVLGKPK-KYQGFSIDVLDALSNYLGFNYEIYVAPDH-KYGSPQEDGTWNGLVGELV 75 (265)
T ss_dssp CCCEEEEEEC---CBTTTBEEECCSTTCCC-EEESHHHHHHHHHHHHHTCEEEEEECTTC-CCCCBCTTSCBCHHHHHHH
T ss_pred CCeEEEEEEe---ccCCeEEEecCCCCCcc-eEeEEEHHHHHHHHHHcCCcEEEEEccCC-cccccCCCCCcchHHHHHH
Confidence 4789999997 34788888765333336 89999999999999999985555443322 2232 3568999999999
Q ss_pred cCcccEEEeceeeecCcceeeeccccccccceEEEEEccCCCCCCcceeccccchhhHHHHHHHHHHHHHHHhhhhcccC
Q 037841 125 LGEFDAAVGDITILLNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWALEHRVN 204 (561)
Q Consensus 125 ~g~~D~~vg~~~it~~R~~~vdfT~p~~~~~~~ivvp~~~~~~~~~~~fl~PF~~~vW~~~~~~~i~~~~v~~~l~~~~~ 204 (561)
+|++|+++++++++++|.+.++||.||+..+.++++++...
T Consensus 76 ~g~~D~~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~~--------------------------------------- 116 (265)
T 2v3u_A 76 FKRADIGISALTITPDRENVVDFTTRYMDYSVGVLLRRGTS--------------------------------------- 116 (265)
T ss_dssp TTSCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEETTCC---------------------------------------
T ss_pred cCCcCeEEeeeEeehhhhccccccceeeeccEEEEEECCCC---------------------------------------
Confidence 99999999889999999999999999999999999986532
Q ss_pred CCCCCCccCccchhHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHhHhhheeeeEeeccCCCcCCHHHHHhC-
Q 037841 205 EDFRGPARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWYFVVLVLTQSYTASLTSLLTVQQLQPTITDVKMLIKR- 283 (561)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~Ril~~~w~~~~lil~~~Yta~LtS~Lt~~~~~~~I~sl~dL~~~- 283 (561)
|++++||.+.
T Consensus 117 ---------------------------------------------------------------------i~~~~dL~~~v 127 (265)
T 2v3u_A 117 ---------------------------------------------------------------------IQSLQDLSKQT 127 (265)
T ss_dssp ---------------------------------------------------------------------CCSHHHHHTCS
T ss_pred ---------------------------------------------------------------------ccchhhhhhhh
Confidence 6889999611
Q ss_pred CCeeEEEeCchHHHHHHhcCCCc------------------cceeecCChHHHHHHhhccccCCceeEEeecchhHHHHH
Q 037841 284 GDNVGYQKGSFVLGILKQLGFDE------------------RKLVVYNSPEECHELFQKGSANGGIAAAFEEIPYGKLLV 345 (561)
Q Consensus 284 ~~~vg~~~gs~~~~~l~~~~~~~------------------~~~~~~~s~~~~~~~l~~g~~~~gv~a~i~~~~~~~~~l 345 (561)
+...|...++....++++.+... .++..+.+.++++++|..|+ + |++.+...+.+++
T Consensus 128 ~v~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~G~----~-a~~~~~~~~~~~~ 202 (265)
T 2v3u_A 128 DIPYGTVLDSAVYQHVRMKGLNPFERDSMYSQMWRMINRSNGSENNVLESQAGIQKVKYGN----Y-AFVWDAAVLEYVA 202 (265)
T ss_dssp SSCEECBTTSHHHHHHHHHHTCTTCSCTHHHHHHHHHCC-----CCBSSHHHHHHHHHHSS----C-EEEEEHHHHHHHH
T ss_pred cEEEEEeccHHHHHHHHhcCCCcccccHHHHHHHHHHHhhcCcccccCCHHHHHHHHHcCC----E-EEEEcchHHHHHH
Confidence 22345555566677776543321 12357889999999999999 8 8888888888887
Q ss_pred hcC--CcceEEeCcccccCceEEEecCCCCChhhHHHHHhhccccchhHHHHHHHcccCCCCC
Q 037841 346 GQH--CYKYTMVEPTFKTAGFGFAFPLHSPLVHDVSKAILSVTEGDKMKEIEDAWFKKHSSCP 406 (561)
Q Consensus 346 ~~~--~~~l~~v~~~~~~~~~~~~~~k~spl~~~in~~Il~l~e~G~~~~i~~kw~~~~~~c~ 406 (561)
+++ |+ +.+++..+...+++++++|++||++.||++|.++.++|.+++|.++|++....|.
T Consensus 203 ~~~~~~~-l~~~~~~~~~~~~~~~~~k~~~l~~~in~~l~~l~~~g~~~~i~~kw~~~~~~c~ 264 (265)
T 2v3u_A 203 INDPDCS-FYTVGNTVADRGYGIALQHGSPYRDVFSQRILELQQSGDMDILKHKWWPKNGQCD 264 (265)
T ss_dssp HHCTTCC-EEEEC---CCEEECCEEETTCTTHHHHHHHHHHHHHHTHHHHHHHHHCCCCCC--
T ss_pred hcCCCcc-EEEeccccCCcceEEEEeCCCccHHHHHHHHHHHhhCChHHHHHhhcCCCcCcCC
Confidence 765 54 8888888888889999999999999999999999999999999999999888885
No 8
>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A
Probab=99.92 E-value=2.4e-25 Score=224.59 Aligned_cols=235 Identities=21% Similarity=0.338 Sum_probs=187.8
Q ss_pred ceEEEEecCCCCCcceEEEeeCCCCCCCceEEEehHHHHHHHHHHCCCceeEEEEecCCCCCC---C----CCCHHHHHH
Q 037841 49 KKLRIGVPVKKGFSYFVNVTIDPKTQEPTSVTGFCIDVFKAVIQELPYAVAYDFVPYGQPDGT---S----SGSYNDLIY 121 (561)
Q Consensus 49 ~~LrVgv~~~~~~~pf~~~~~d~~~~~~~~~~G~~idl~~~i~~~l~f~v~~~~v~~~~~~g~---~----ngs~~~li~ 121 (561)
+.|+||+. +.|+||.+.+. ++ ++.||++||++++++++|+++++..++.+ .+|. . +++|++++.
T Consensus 41 ~~l~vg~~--~~~~P~~~~~~-----~g-~~~G~~vDll~~ia~~lg~~~~~~~~~d~-~~g~~~~~~~~~~~~w~~~~~ 111 (292)
T 1pb7_A 41 KVICTGPN--DTSPGSPRHTV-----PQ-CCYGFCIDLLIKLARTMNFTYEVHLVADG-KFGTQERVNNSNKKEWNGMMG 111 (292)
T ss_dssp CEEEEEEC----------CEE-----EE-EEESHHHHHHHHHHHHHTCCEEEEECTTC-CCCCEEECTTSSCEEECHHHH
T ss_pred ceeecccC--CCCCCcccccc-----cc-CcceeHHHHHHHHHHHcCceEEEEEecCC-cccccccccccccCcHHHHHH
Confidence 67889887 67888877664 34 89999999999999999986655554332 3443 1 258999999
Q ss_pred HHHcCcccEEEeceeeecCcceeeeccccccccceEEEEEccCCCCCCcceeccccchhhHHHHHHHHHHHHHHHhhhhc
Q 037841 122 QVFLGEFDAAVGDITILLNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWALEH 201 (561)
Q Consensus 122 ~l~~g~~D~~vg~~~it~~R~~~vdfT~p~~~~~~~ivvp~~~~~~~~~~~fl~PF~~~vW~~~~~~~i~~~~v~~~l~~ 201 (561)
+|.+|++|+++++++++++|.+.++||.||+.++.+++++++..
T Consensus 112 ~l~~g~~D~~~~~~~~t~~R~~~~~fs~Py~~~~~~i~~~~~~~------------------------------------ 155 (292)
T 1pb7_A 112 ELLSGQADMIVAPLTINNERAQYIEFSKPFKYQGLTILVKKGTR------------------------------------ 155 (292)
T ss_dssp HHHHTSCSEECSSCBCCHHHHTTEEECSCSEEEEEEEEEETTCC------------------------------------
T ss_pred HHHcCCcCEEEeeeEecHHHhcceEechhhHhcCeEEEEECCcC------------------------------------
Confidence 99999999999999999999999999999999999999986542
Q ss_pred ccCCCCCCCccCccchhHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHhHhhheeeeEeeccCCCcCCHHHHH
Q 037841 202 RVNEDFRGPARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWYFVVLVLTQSYTASLTSLLTVQQLQPTITDVKMLI 281 (561)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~Ril~~~w~~~~lil~~~Yta~LtS~Lt~~~~~~~I~sl~dL~ 281 (561)
+++++||.
T Consensus 156 ------------------------------------------------------------------------i~~~~dl~ 163 (292)
T 1pb7_A 156 ------------------------------------------------------------------------ITGINDPR 163 (292)
T ss_dssp ------------------------------------------------------------------------CCSTTCHH
T ss_pred ------------------------------------------------------------------------CCCCcCcc
Confidence 46677775
Q ss_pred hCC---Ce-eEEEeCchHHHHHHhc-C----CCccceeecCChHHHHHHhhccccCCceeEEeecchhHHHHHhcCCcce
Q 037841 282 KRG---DN-VGYQKGSFVLGILKQL-G----FDERKLVVYNSPEECHELFQKGSANGGIAAAFEEIPYGKLLVGQHCYKY 352 (561)
Q Consensus 282 ~~~---~~-vg~~~gs~~~~~l~~~-~----~~~~~~~~~~s~~~~~~~l~~g~~~~gv~a~i~~~~~~~~~l~~~~~~l 352 (561)
..+ .. +|+..++....++++. . .+..+++.+.+.++++++|.+|+ +||++.+...+.++++++|+ +
T Consensus 164 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~----vDa~i~d~~~~~~~~~~~~~-l 238 (292)
T 1pb7_A 164 LRNPSDKFIYATVKQSSVDIYFRRQVELSTMYRHMEKHNYESAAEAIQAVRDNK----LHAFIWDSAVLEFEASQKCD-L 238 (292)
T ss_dssp HHSCBTTBCEECBTTSHHHHHHHTCGGGHHHHHHHTTTCBSSHHHHHHHHHTTS----CSEEEEEHHHHHHHHHHCTT-E
T ss_pred ccCcccceEEEEEcCchHHHHhhhcccHHHHHHHHHhhcCCCHHHHHHHHHcCC----ceEEEEcHHHHHHHHhcCCC-E
Confidence 334 23 5777888877777542 1 12235667889999999999999 99999999999999999995 8
Q ss_pred EEeCcccccCceEEEecCCCCChhhHHHHHhhccccchhHHHHHHHcccCCCCC
Q 037841 353 TMVEPTFKTAGFGFAFPLHSPLVHDVSKAILSVTEGDKMKEIEDAWFKKHSSCP 406 (561)
Q Consensus 353 ~~v~~~~~~~~~~~~~~k~spl~~~in~~Il~l~e~G~~~~i~~kw~~~~~~c~ 406 (561)
.+++..+...+++++++|++||++.||++|.++.++|.+++|.+||+. ...|.
T Consensus 239 ~~~~~~~~~~~~~ia~~k~~~l~~~in~al~~l~~~G~~~~l~~kw~~-~~~c~ 291 (292)
T 1pb7_A 239 VTTGELFFRSGFGIGMRKDSPWKQNVSLSILKSHENGFMEDLDKTWVR-YQECD 291 (292)
T ss_dssp EECSSCSEEEEECCEEETTCSSHHHHHHHHHHHHHSSHHHHHHHHHTS-SSCCC
T ss_pred EEcCccccCCceEEEEeCCCHHHHHHHHHHHHHHhCCCHHHHHHhhCC-CCCCC
Confidence 889888888899999999999999999999999999999999999996 45675
No 9
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A
Probab=99.91 E-value=1.2e-24 Score=219.56 Aligned_cols=213 Identities=20% Similarity=0.386 Sum_probs=177.0
Q ss_pred EEEehHHHHHHHHHHCCCceeEEEEecCCCCCC-CCCCHHHHHHHHHcCcccEEEeceeeecCcceeeeccccccccceE
Q 037841 79 VTGFCIDVFKAVIQELPYAVAYDFVPYGQPDGT-SSGSYNDLIYQVFLGEFDAAVGDITILLNRSNYVDFTLPYTESGVS 157 (561)
Q Consensus 79 ~~G~~idl~~~i~~~l~f~v~~~~v~~~~~~g~-~ngs~~~li~~l~~g~~D~~vg~~~it~~R~~~vdfT~p~~~~~~~ 157 (561)
+.|+++||++++++++|+++++..++. ..+|. .+++|++++.+|.+|++|+++++++++++|.+.++||.||+.++.+
T Consensus 68 ~~G~~vdll~~ia~~lg~~~~~~~~~~-~~~g~~~~~~w~~~~~~l~~g~~D~~~~~~~~t~eR~~~~~fs~P~~~~~~~ 146 (294)
T 2rc8_A 68 CYGYCIDLLEQLAEDMNFDFDLYIVGD-GKYGAWKNGHWTGLVGDLLSGTANMAVTSFSINTARSQVIDFTSPFFSTSLG 146 (294)
T ss_dssp EESHHHHHHHHHHHHHTEEEEEEECTT-CCCCCEETTEECHHHHHHHHTSCSEECSSCBCCHHHHTTSEECSCSEEEEEE
T ss_pred ceEEhHHHHHHHHHHcCCcEEEEECCC-CcccccCCCCHHHHHHHHHCCCcCEEEeccccCHhHhceEEEccchHhcceE
Confidence 799999999999999998555544332 22333 5678999999999999999999899999999999999999999999
Q ss_pred EEEEccCCCCCCcceeccccchhhHHHHHHHHHHHHHHHhhhhcccCCCCCCCccCccchhHHHHHHHhhhccccccccc
Q 037841 158 MIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWALEHRVNEDFRGPARHQVGTSFWFSFSTMVFSQRERVISN 237 (561)
Q Consensus 158 ivvp~~~~~~~~~~~fl~PF~~~vW~~~~~~~i~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~ 237 (561)
++++++...
T Consensus 147 i~~~~~~~~----------------------------------------------------------------------- 155 (294)
T 2rc8_A 147 ILVRTRGTE----------------------------------------------------------------------- 155 (294)
T ss_dssp EEEETTSCC-----------------------------------------------------------------------
T ss_pred EEEECCCCC-----------------------------------------------------------------------
Confidence 999966422
Q ss_pred hhHHHHHHHHHHHHHHHHHhHhhheeeeEeeccCCCcCCHHHHH----hCCCeeEEEeCchHHHHHHhcCCCc----cce
Q 037841 238 LARFVVIVWYFVVLVLTQSYTASLTSLLTVQQLQPTITDVKMLI----KRGDNVGYQKGSFVLGILKQLGFDE----RKL 309 (561)
Q Consensus 238 ~~Ril~~~w~~~~lil~~~Yta~LtS~Lt~~~~~~~I~sl~dL~----~~~~~vg~~~gs~~~~~l~~~~~~~----~~~ 309 (561)
|++++||. ..|+++|+..|+....++++. ++. .+.
T Consensus 156 ------------------------------------i~~~~dL~~~~~~~g~~vg~~~gs~~~~~l~~~-~~~~~~~i~~ 198 (294)
T 2rc8_A 156 ------------------------------------LSGIHDPKLHHPSQGFRFGTVRESSAEDYVRQS-FPEMHEYMRR 198 (294)
T ss_dssp ------------------------------------CCSTTCHHHHSCCTTCCEECBTTSHHHHHHHHH-CHHHHHHHGG
T ss_pred ------------------------------------cCChhhhhhcCcccCeEEEEEcCChHHHHHHHH-HHHHHHHHHH
Confidence 67788884 238899999999999888764 221 122
Q ss_pred eecCChHHHHHHhhc--cccCCceeEEeecchhHHHHHhcC--CcceEEeCcccccCceEEEecCCCCChhhHHHHHhhc
Q 037841 310 VVYNSPEECHELFQK--GSANGGIAAAFEEIPYGKLLVGQH--CYKYTMVEPTFKTAGFGFAFPLHSPLVHDVSKAILSV 385 (561)
Q Consensus 310 ~~~~s~~~~~~~l~~--g~~~~gv~a~i~~~~~~~~~l~~~--~~~l~~v~~~~~~~~~~~~~~k~spl~~~in~~Il~l 385 (561)
..+.+.++++++|.+ |+ +||++.+...+.++++++ |+ +.++++.+...+++++++|+++|++.||++|.++
T Consensus 199 ~~~~~~~~~~~~l~~~~Gr----vDa~i~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~ia~~k~~~l~~~in~al~~l 273 (294)
T 2rc8_A 199 YNVPATPDGVQYLKNDPEK----LDAFIMDKALLDYEVSIDADCK-LLTVGKPFAIEGYGIGLPPNSPLTSNISELISQY 273 (294)
T ss_dssp GCBSSHHHHHHHHHSSSCC----CSEEEEEHHHHHHHHHTCSSSC-EEECSCCEEEEEECCEECTTCTHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHhccCc----eeEEEecHHHHHHHHhhCCCCC-EEEcCCcccccceEEEecCCCHHHHHHHHHHHHH
Confidence 357899999999999 88 999999999999998864 64 8888888888889999999999999999999999
Q ss_pred cccchhHHHHHHHcccCCCCC
Q 037841 386 TEGDKMKEIEDAWFKKHSSCP 406 (561)
Q Consensus 386 ~e~G~~~~i~~kw~~~~~~c~ 406 (561)
.++|.+++|.+||++ ...|.
T Consensus 274 ~~~G~~~~l~~kw~~-~~~c~ 293 (294)
T 2rc8_A 274 KSHGFMDVLHDKWYK-VVPCG 293 (294)
T ss_dssp HHTTHHHHHHHHHCC-C----
T ss_pred HhCCCHHHHHHhhcC-CCCCC
Confidence 999999999999996 55675
No 10
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=99.91 E-value=7.6e-24 Score=205.59 Aligned_cols=224 Identities=18% Similarity=0.290 Sum_probs=192.0
Q ss_pred CceEEEEecCCCCCcceEEE-eeCCCCCCCceEEEehHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcC
Q 037841 48 EKKLRIGVPVKKGFSYFVNV-TIDPKTQEPTSVTGFCIDVFKAVIQELPYAVAYDFVPYGQPDGTSSGSYNDLIYQVFLG 126 (561)
Q Consensus 48 g~~LrVgv~~~~~~~pf~~~-~~d~~~~~~~~~~G~~idl~~~i~~~l~f~v~~~~v~~~~~~g~~ngs~~~li~~l~~g 126 (561)
.++|+||+. ++|+||.+. + .++ ++.|+++|+++++++++|+++++... +|.+++.++.+|
T Consensus 2 ~~~l~v~~~--~~~~P~~~~~~-----~~g-~~~G~~~dl~~~i~~~~g~~~~~~~~-----------~~~~~~~~l~~g 62 (237)
T 3kzg_A 2 SLNLTIGTS--KFNPPFEVWSG-----NNS-SLYGFDIDLMQEICRRLHATCTFEAY-----------IFDDLFPALKNR 62 (237)
T ss_dssp CCEEEEEEE--SEETTTEECCC-----TTS-CCBSHHHHHHHHHHHHTTCEEEEEEE-----------CGGGHHHHHHTT
T ss_pred CceEEEEEC--CCCCCeEEEeC-----CCC-CEeeehHHHHHHHHHHhCCceEEEEc-----------CHHHHHHHHhCC
Confidence 368999998 679999987 4 345 88999999999999999985555432 489999999999
Q ss_pred cccEEEeceeeecCcceeeeccccccccceEEEEEccCCCCCCcceeccccchhhHHHHHHHHHHHHHHHhhhhcccCCC
Q 037841 127 EFDAAVGDITILLNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWALEHRVNED 206 (561)
Q Consensus 127 ~~D~~vg~~~it~~R~~~vdfT~p~~~~~~~ivvp~~~~~~~~~~~fl~PF~~~vW~~~~~~~i~~~~v~~~l~~~~~~~ 206 (561)
++|++++++..+++|.+.++||.||.....++++++...
T Consensus 63 ~~D~~~~~~~~~~~r~~~~~fs~p~~~~~~~~~~~~~~~----------------------------------------- 101 (237)
T 3kzg_A 63 EVDLVIASMIITDERKKHFIFSLPYMESNSQYITTVDSK----------------------------------------- 101 (237)
T ss_dssp SSSEECSSCBCCTTGGGTCEECCCSBCCEEEEEEETTCS-----------------------------------------
T ss_pred CCCEEEEccccChhHhccceeeeeeeecceEEEEECCCC-----------------------------------------
Confidence 999999889999999999999999999999999986542
Q ss_pred CCCCccCccchhHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHhHhhheeeeEeeccCCCcCCHHHHHhCCCe
Q 037841 207 FRGPARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWYFVVLVLTQSYTASLTSLLTVQQLQPTITDVKMLIKRGDN 286 (561)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~Ril~~~w~~~~lil~~~Yta~LtS~Lt~~~~~~~I~sl~dL~~~~~~ 286 (561)
+++++|| .|++
T Consensus 102 -------------------------------------------------------------------~~~~~dL--~g~~ 112 (237)
T 3kzg_A 102 -------------------------------------------------------------------ISTFDDL--HGKK 112 (237)
T ss_dssp -------------------------------------------------------------------CCSGGGG--TTCE
T ss_pred -------------------------------------------------------------------CCCHHHh--CCCE
Confidence 5889999 6899
Q ss_pred eEEEeCchHHHHHHhcCCCccceeecCChHHHHHHhhccccCCceeEEeecchhHHHHHhcCC------c-ceEEeCccc
Q 037841 287 VGYQKGSFVLGILKQLGFDERKLVVYNSPEECHELFQKGSANGGIAAAFEEIPYGKLLVGQHC------Y-KYTMVEPTF 359 (561)
Q Consensus 287 vg~~~gs~~~~~l~~~~~~~~~~~~~~s~~~~~~~l~~g~~~~gv~a~i~~~~~~~~~l~~~~------~-~l~~v~~~~ 359 (561)
||+..|+.....+.+. ++..+++.+.+.++++++|..|+ +||++.+...+.++++++. . ++.+++..+
T Consensus 113 i~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~G~----vDa~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 187 (237)
T 3kzg_A 113 IGVRKGTPYARQVLSE-NRNNQVIFYELIQDMLLGLSNNQ----VDASLMDYEAAKYWMASEPYAYKLIGKKYKLIGKKI 187 (237)
T ss_dssp EEEETTSTHHHHHHHT-CSSCEEEEESSHHHHHHHHHTTS----SSEEEEEHHHHHHHHTTSSTTHHHHCCSEEEEEEEE
T ss_pred EEEecCCHHHHHHHHh-CCCCcEEEeCCHHHHHHHHHcCC----CCEEEeCcHHHHHHHHhCCccccccCCceEEecCcc
Confidence 9999999977777663 45578899999999999999999 9999999999999998865 2 588888777
Q ss_pred -ccCceEEEecCCCC-ChhhHHHHHhhccccchhHHHHHHHcccCCCC
Q 037841 360 -KTAGFGFAFPLHSP-LVHDVSKAILSVTEGDKMKEIEDAWFKKHSSC 405 (561)
Q Consensus 360 -~~~~~~~~~~k~sp-l~~~in~~Il~l~e~G~~~~i~~kw~~~~~~c 405 (561)
...+++++++|+++ +++.||++|.++.++|.+++|.++|+.....|
T Consensus 188 ~~~~~~~~~~~k~~~~l~~~l~~~l~~l~~~G~~~~i~~k~~~~~~~~ 235 (237)
T 3kzg_A 188 SIGEGYSIMANPDQFVLIKKINKILLEMEADGTYLRLYSEYFEGHHHH 235 (237)
T ss_dssp ECTTCBCCEECGGGHHHHHHHHHHHHHHHHSSHHHHHHHHHC------
T ss_pred ccCccEEEEEcCCCHHHHHHHHHHHHHHHHCCcHHHHHHHHhCccccc
Confidence 78889999999977 99999999999999999999999999755444
No 11
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=99.91 E-value=7.2e-24 Score=206.83 Aligned_cols=231 Identities=20% Similarity=0.311 Sum_probs=200.5
Q ss_pred CCceEEEEecCCCCCcceEEEeeCCCCCCCceEEEehHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcC
Q 037841 47 NEKKLRIGVPVKKGFSYFVNVTIDPKTQEPTSVTGFCIDVFKAVIQELPYAVAYDFVPYGQPDGTSSGSYNDLIYQVFLG 126 (561)
Q Consensus 47 ~g~~LrVgv~~~~~~~pf~~~~~d~~~~~~~~~~G~~idl~~~i~~~l~f~v~~~~v~~~~~~g~~ngs~~~li~~l~~g 126 (561)
+.++|+||+. ++|+||.+.+. ++ ++.|+++|+++++++++|++ ++++.. +|.+++.++.+|
T Consensus 3 ~~~~l~v~~~--~~~~P~~~~~~-----~g-~~~G~~~dl~~~i~~~~g~~--~~~~~~---------~~~~~~~~l~~g 63 (245)
T 3k4u_A 3 LRGELRVGLE--PGYLPFEMKDK-----KG-NVIGFDVDLAREMAKAMGVK--LKLVPT---------SWDGLIPGLVTE 63 (245)
T ss_dssp CCSEEEEEEC--TTSTTTCEEET-----TT-EEESHHHHHHHHHHHHHTCE--EEEEEC---------CGGGHHHHHHTT
T ss_pred cCCeEEEEEC--CCcCCeeEECC-----CC-CCccchHHHHHHHHHHhCCe--EEEEEc---------cHHHHHHHHhCC
Confidence 3578999998 78999998763 45 89999999999999999974 555552 599999999999
Q ss_pred cccEEEeceeeecCcceeeeccccccccceEEEEEccCCCCCCcceeccccchhhHHHHHHHHHHHHHHHhhhhcccCCC
Q 037841 127 EFDAAVGDITILLNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWALEHRVNED 206 (561)
Q Consensus 127 ~~D~~vg~~~it~~R~~~vdfT~p~~~~~~~ivvp~~~~~~~~~~~fl~PF~~~vW~~~~~~~i~~~~v~~~l~~~~~~~ 206 (561)
++|++++++..+++|.+.+.||.||.....++++++.....
T Consensus 64 ~~D~~~~~~~~t~~r~~~~~~s~p~~~~~~~~~~~~~~~~~--------------------------------------- 104 (245)
T 3k4u_A 64 KFDIIISGMTISQERNLRVNFVEPYIVVGQSLLVKKGLEKG--------------------------------------- 104 (245)
T ss_dssp SCSEECSSCBCCHHHHTTSEECSCSEEECEEEEEETTTTTT---------------------------------------
T ss_pred CcCEEEecCcCCHHHHhhcCcchhhheeceEEEEECCcccc---------------------------------------
Confidence 99999888999999999999999999999999999764322
Q ss_pred CCCCccCccchhHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHhHhhheeeeEeeccCCCcCCHHHHHhCCCe
Q 037841 207 FRGPARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWYFVVLVLTQSYTASLTSLLTVQQLQPTITDVKMLIKRGDN 286 (561)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~Ril~~~w~~~~lil~~~Yta~LtS~Lt~~~~~~~I~sl~dL~~~~~~ 286 (561)
+++++||...|++
T Consensus 105 -------------------------------------------------------------------i~~~~dL~~~g~~ 117 (245)
T 3k4u_A 105 -------------------------------------------------------------------VKSYKDLDKPELT 117 (245)
T ss_dssp -------------------------------------------------------------------CCSGGGGCCSSCE
T ss_pred -------------------------------------------------------------------cCCHHHhccCCcE
Confidence 7899999544889
Q ss_pred eEEEeCchHHHHHHhcCCCccceeecCChHHHHHHhhccccCCceeEEeecchhHHHHHhcCC-cceEEeCcccccCceE
Q 037841 287 VGYQKGSFVLGILKQLGFDERKLVVYNSPEECHELFQKGSANGGIAAAFEEIPYGKLLVGQHC-YKYTMVEPTFKTAGFG 365 (561)
Q Consensus 287 vg~~~gs~~~~~l~~~~~~~~~~~~~~s~~~~~~~l~~g~~~~gv~a~i~~~~~~~~~l~~~~-~~l~~v~~~~~~~~~~ 365 (561)
||+..|+....++++. .+..+++.+++.++++++|..|+ +||++.+...+.+++++.. ..+.+++..+...+++
T Consensus 118 i~v~~g~~~~~~l~~~-~~~~~~~~~~~~~~~~~~L~~Gr----vDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (245)
T 3k4u_A 118 LVTKFGVSAEYAAKRL-FKNAKLKTYDTEAEAVQEVLNGK----ADMFIFDLPFNVAFMAQKGQGYLVHLDTSLTYEPLG 192 (245)
T ss_dssp EEEETTSHHHHHHHHH-CSSSEEEEESSHHHHHHHHHSSS----SEEEEEEHHHHHHHHHHTTTTTEEEECCCCSCEEEC
T ss_pred EEEeCCcHHHHHHHhh-CCcCCEEEeCCHHHHHHHHHcCC----CcEEEEcHHHHHHHHhcCCccceeecCCCcccccEE
Confidence 9999999999999874 45678899999999999999999 9999999999998887764 4577788888888999
Q ss_pred EEecCCCC-ChhhHHHHHhhccccchhHHHHHHHcccCCCCCC
Q 037841 366 FAFPLHSP-LVHDVSKAILSVTEGDKMKEIEDAWFKKHSSCPD 407 (561)
Q Consensus 366 ~~~~k~sp-l~~~in~~Il~l~e~G~~~~i~~kw~~~~~~c~~ 407 (561)
++++|++| +++.||++|.++.++|.+++|.++|++....+..
T Consensus 193 ~~~~k~~~~l~~~ln~~l~~l~~~g~~~~i~~k~~~~~~~~~~ 235 (245)
T 3k4u_A 193 WAIKKGDPDFLNWLNHFLAQIKHDGSYDELYERWFVDTKWLEK 235 (245)
T ss_dssp CEECTTCHHHHHHHHHHHHHHHHHSHHHHHHHHHHTCCSGGGC
T ss_pred EEEcCCCHHHHHHHHHHHHHHHhCcHHHHHHHHhcCccccchh
Confidence 99999999 9999999999999999999999999976544433
No 12
>1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A* 1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A* 1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A 1my0_A ...
Probab=99.90 E-value=1.7e-23 Score=206.65 Aligned_cols=239 Identities=18% Similarity=0.309 Sum_probs=188.1
Q ss_pred CceEEEEecCCCCCcceEEEeeC--CCCCCCceEEEehHHHHHHHHHHCCCceeEEEEecCCCCCC--CCC-CHHHHHHH
Q 037841 48 EKKLRIGVPVKKGFSYFVNVTID--PKTQEPTSVTGFCIDVFKAVIQELPYAVAYDFVPYGQPDGT--SSG-SYNDLIYQ 122 (561)
Q Consensus 48 g~~LrVgv~~~~~~~pf~~~~~d--~~~~~~~~~~G~~idl~~~i~~~l~f~v~~~~v~~~~~~g~--~ng-s~~~li~~ 122 (561)
+++|+|++. +|+||.+.+.+ +..+++ ++.|+++||++++++++|+++++...+.+ .+|. .++ +|++++.+
T Consensus 3 ~~~l~v~~~---~~pP~~~~~~~~~~~~~~g-~~~G~~~dl~~~ia~~lg~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~ 77 (263)
T 1mqi_A 3 NKTVVVTTI---LESPYVMMKKNHEMLEGNE-RYEGYCVDLAAEIAKHCGFKYKLTIVGDG-KYGARDADTKIWNGMVGE 77 (263)
T ss_dssp CCCEEEEEC---CBTTTBEECTTGGGCCGGG-GEESHHHHHHHHHHHHHTCCEEEEECTTC-CCCCBCTTTCCBCHHHHH
T ss_pred CeEEEEEEe---cCCCcEEEecCcccccCCC-ceeeeHHHHHHHHHHHcCceEEEEEcccc-ccCccCCCCCCcHHHHHH
Confidence 578999997 47888887642 111236 89999999999999999985554443211 1221 233 79999999
Q ss_pred HHcCcccEEEeceeeecCcceeeeccccccccceEEEEEccCCCCCCcceeccccchhhHHHHHHHHHHHHHHHhhhhcc
Q 037841 123 VFLGEFDAAVGDITILLNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWALEHR 202 (561)
Q Consensus 123 l~~g~~D~~vg~~~it~~R~~~vdfT~p~~~~~~~ivvp~~~~~~~~~~~fl~PF~~~vW~~~~~~~i~~~~v~~~l~~~ 202 (561)
|.+|++|+++++++++++|.+.++||.||+.++.++++++...
T Consensus 78 l~~g~~D~~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~~------------------------------------- 120 (263)
T 1mqi_A 78 LVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGTP------------------------------------- 120 (263)
T ss_dssp HHTTSCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEETTCS-------------------------------------
T ss_pred HHcCCcCEEEEeeEecHHHHhhcccccceecccEEEEEcCccc-------------------------------------
Confidence 9999999999889999999999999999999999999986542
Q ss_pred cCCCCCCCccCccchhHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHhHhhheeeeEeeccCCCcCCHHHHHh
Q 037841 203 VNEDFRGPARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWYFVVLVLTQSYTASLTSLLTVQQLQPTITDVKMLIK 282 (561)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~Ril~~~w~~~~lil~~~Yta~LtS~Lt~~~~~~~I~sl~dL~~ 282 (561)
+++++||.
T Consensus 121 -----------------------------------------------------------------------i~~~~dL~- 128 (263)
T 1mqi_A 121 -----------------------------------------------------------------------IESAEDLS- 128 (263)
T ss_dssp -----------------------------------------------------------------------CCSHHHHH-
T ss_pred -----------------------------------------------------------------------cCCHHHHh-
Confidence 68899995
Q ss_pred CCCe---eEEEeCchHHHHHHhcCCC-----------ccceeecCChHHHHHHh--hccccCCceeEEeecchhHHHHHh
Q 037841 283 RGDN---VGYQKGSFVLGILKQLGFD-----------ERKLVVYNSPEECHELF--QKGSANGGIAAAFEEIPYGKLLVG 346 (561)
Q Consensus 283 ~~~~---vg~~~gs~~~~~l~~~~~~-----------~~~~~~~~s~~~~~~~l--~~g~~~~gv~a~i~~~~~~~~~l~ 346 (561)
|++ +|...++...+.+.+.++. ..+++.+.+.++++++| ..|+ +|++.+...+.++++
T Consensus 129 -g~~~~~ig~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~-----da~~~~~~~~~~~~~ 202 (263)
T 1mqi_A 129 -KQTEIAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGK-----YAYLLESTMNEYIEQ 202 (263)
T ss_dssp -TCSSSEEECBSSSHHHHHHHHCCSHHHHHHHHHHHHCSSCCCBSSHHHHHHHHHHTTTS-----EEEEEEHHHHHHHTT
T ss_pred -cccCeeEEEEeccHHHHHHHhccchhHHHHHHHHhhCCCceecCCHHHHHHHHhhcCCc-----EEEEechHHHHHHHh
Confidence 665 5654444444555443321 12467788999999999 7777 588888888888887
Q ss_pred cCCcceEEeCcccccCceEEEecCCCCChhhHHHHHhhccccchhHHHHHHHcccCCCCC
Q 037841 347 QHCYKYTMVEPTFKTAGFGFAFPLHSPLVHDVSKAILSVTEGDKMKEIEDAWFKKHSSCP 406 (561)
Q Consensus 347 ~~~~~l~~v~~~~~~~~~~~~~~k~spl~~~in~~Il~l~e~G~~~~i~~kw~~~~~~c~ 406 (561)
++...+.++++.+...+++++++|+++|++.||++|.++.++|.+++|.++|+.....|+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~in~~l~~l~~~g~~~~i~~k~~~~~~~C~ 262 (263)
T 1mqi_A 203 RKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKGECG 262 (263)
T ss_dssp STTCCEEEESCCSCCEEECCEEETTCTTHHHHHHHHHHHHHTTHHHHHHHHHHTTTCSCC
T ss_pred cCCCceEEcCCcccccceEEEEeCCCccHHHHHHHHHHHHhcccHHHHHHHHcCCCCCCC
Confidence 763247778877878889999999999999999999999999999999999999888896
No 13
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=99.90 E-value=3.3e-23 Score=202.74 Aligned_cols=223 Identities=19% Similarity=0.370 Sum_probs=195.5
Q ss_pred CCceEEEEecCCCCCcceEEEeeCCCCCCCceEEEehHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcC
Q 037841 47 NEKKLRIGVPVKKGFSYFVNVTIDPKTQEPTSVTGFCIDVFKAVIQELPYAVAYDFVPYGQPDGTSSGSYNDLIYQVFLG 126 (561)
Q Consensus 47 ~g~~LrVgv~~~~~~~pf~~~~~d~~~~~~~~~~G~~idl~~~i~~~l~f~v~~~~v~~~~~~g~~ngs~~~li~~l~~g 126 (561)
..++|+||+. ++|+||.+. . ++ +++|+++|+++++++++|+++++... +|.+++.++.+|
T Consensus 22 ~~~~l~v~~~--~~~~P~~~~-~-----~g-~~~G~~~dl~~~i~~~~g~~~~~~~~-----------~~~~~~~~l~~g 81 (249)
T 4f3p_A 22 MAKELVVGTD--TSFMPFEFK-Q-----GD-KYVGFDLDLWAEIAKGAGWTYKIQPM-----------DFAGLIPALQTQ 81 (249)
T ss_dssp --CCEEEEEE--SCBTTTBEE-E-----TT-EEESHHHHHHHHHHHHHTCCEEEEEE-----------CGGGHHHHHHTT
T ss_pred cCceEEEEeC--CCCCCeEEe-c-----CC-eEEEEhHHHHHHHHHHcCCceEEEec-----------CHHHHHHHHHCC
Confidence 4678999997 788999886 2 34 89999999999999999986655543 489999999999
Q ss_pred cccEEEeceeeecCcceeeeccccccccceEEEEEccCCCCCCcceeccccchhhHHHHHHHHHHHHHHHhhhhcccCCC
Q 037841 127 EFDAAVGDITILLNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWALEHRVNED 206 (561)
Q Consensus 127 ~~D~~vg~~~it~~R~~~vdfT~p~~~~~~~ivvp~~~~~~~~~~~fl~PF~~~vW~~~~~~~i~~~~v~~~l~~~~~~~ 206 (561)
++|++++++..+++|.+.++||.||.....++++++....
T Consensus 82 ~~D~~~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~~---------------------------------------- 121 (249)
T 4f3p_A 82 NIDVALSGMTIKEERRKAIDFSDPYYDSGLAAMVQANNTT---------------------------------------- 121 (249)
T ss_dssp SCSEEEEEEECCHHHHTTEEECSCCEEEEEEEEEETTCCS----------------------------------------
T ss_pred CCCEEEeccccCHHHHcCcceecceeeccEEEEEECCCCC----------------------------------------
Confidence 9999988899999999999999999999999999866532
Q ss_pred CCCCccCccchhHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHhHhhheeeeEeeccCCCcCCHHHHHhCCCe
Q 037841 207 FRGPARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWYFVVLVLTQSYTASLTSLLTVQQLQPTITDVKMLIKRGDN 286 (561)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~Ril~~~w~~~~lil~~~Yta~LtS~Lt~~~~~~~I~sl~dL~~~~~~ 286 (561)
+++++|| .|++
T Consensus 122 -------------------------------------------------------------------i~~~~dL--~g~~ 132 (249)
T 4f3p_A 122 -------------------------------------------------------------------IKSIDDL--NGKV 132 (249)
T ss_dssp -------------------------------------------------------------------CCSSGGG--TTSE
T ss_pred -------------------------------------------------------------------cCChHHh--CCCE
Confidence 7899999 6999
Q ss_pred eEEEeCchHHHHHHhcCCCccceeecCChHHHHHHhhccccCCceeEEeecchhHHHHHhcCC-cceEEeCcccccCceE
Q 037841 287 VGYQKGSFVLGILKQLGFDERKLVVYNSPEECHELFQKGSANGGIAAAFEEIPYGKLLVGQHC-YKYTMVEPTFKTAGFG 365 (561)
Q Consensus 287 vg~~~gs~~~~~l~~~~~~~~~~~~~~s~~~~~~~l~~g~~~~gv~a~i~~~~~~~~~l~~~~-~~l~~v~~~~~~~~~~ 365 (561)
||+..|+....++++. .+..+++.+++.++++++|.+|+ +|+++.+...+.+++++.. ..+.+++..+...+++
T Consensus 133 i~v~~g~~~~~~l~~~-~~~~~~~~~~~~~~~~~~L~~Gr----vDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 207 (249)
T 4f3p_A 133 IAAKTGTATIDWIKAH-LKPKEIRQFPNIDQAYLALEAGR----VDAAMHDTPNVLFFVNNEGKGRVKVAGAPVSGDKYG 207 (249)
T ss_dssp EEEETTSHHHHHHHHH-CCCSEEEEESSHHHHHHHHHTTS----SSEEEEEHHHHHHHHHTTTTTTEEEEEEEEEEEEEE
T ss_pred EEEeCCChHHHHHHhc-CCCceEEEcCCHHHHHHHHHcCC----eeEEEeCcHHHHHHHHhCCCCceEEecCCCCCccEE
Confidence 9999999999998874 45668899999999999999999 9999999999999998764 3577888888888899
Q ss_pred EEecCCCCChhhHHHHHhhccccchhHHHHHHHcccCC
Q 037841 366 FAFPLHSPLVHDVSKAILSVTEGDKMKEIEDAWFKKHS 403 (561)
Q Consensus 366 ~~~~k~spl~~~in~~Il~l~e~G~~~~i~~kw~~~~~ 403 (561)
++++|++|+.+.||++|.++.++|.+++|.++|++...
T Consensus 208 ~~~~k~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~~~~ 245 (249)
T 4f3p_A 208 IGFPKGSPLVAKVNAELARMKADGRYAKIYKKWFGSEP 245 (249)
T ss_dssp EEEETTCTHHHHHHHHHHHHHHHTHHHHHHHHHHSSCC
T ss_pred EEEcCCchHHHHHHHHHHHHHhCCcHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999997543
No 14
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=99.90 E-value=2.5e-23 Score=205.95 Aligned_cols=223 Identities=18% Similarity=0.291 Sum_probs=196.0
Q ss_pred CCceEEEEecCCCCCcceEEEeeCCCCCCCceEEEehHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcC
Q 037841 47 NEKKLRIGVPVKKGFSYFVNVTIDPKTQEPTSVTGFCIDVFKAVIQELPYAVAYDFVPYGQPDGTSSGSYNDLIYQVFLG 126 (561)
Q Consensus 47 ~g~~LrVgv~~~~~~~pf~~~~~d~~~~~~~~~~G~~idl~~~i~~~l~f~v~~~~v~~~~~~g~~ngs~~~li~~l~~g 126 (561)
+.++||||+. ++|+||.+.+. ++ ++.|+++|+++++++++|+ +++++.. +|.+++.++.+|
T Consensus 19 ~~~~l~v~~~--~~~~P~~~~~~-----~g-~~~G~~~dl~~~i~~~~g~--~~~~~~~---------~~~~~~~~l~~g 79 (268)
T 3hv1_A 19 KEKKIKIGFD--ATFVPMGYEEK-----DG-SYIGFDIDLANAVFKLYGI--DVEWQAI---------DWDMKETELKNG 79 (268)
T ss_dssp HHTEEEEEEC--TEETTTEEECT-----TS-CEECHHHHHHHHHHHTTTC--EEEEEEC---------CGGGHHHHHHHT
T ss_pred cCCcEEEEEC--CCCCCceEECC-----CC-CEEEehHHHHHHHHHHhCC--cEEEEEC---------CHHHHHHHHHCC
Confidence 4678999997 68899998763 45 8999999999999999997 4555552 599999999999
Q ss_pred cccEEEeceeeecCcceeeeccccccccceEEEEEccCCCCCCcceeccccchhhHHHHHHHHHHHHHHHhhhhcccCCC
Q 037841 127 EFDAAVGDITILLNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWALEHRVNED 206 (561)
Q Consensus 127 ~~D~~vg~~~it~~R~~~vdfT~p~~~~~~~ivvp~~~~~~~~~~~fl~PF~~~vW~~~~~~~i~~~~v~~~l~~~~~~~ 206 (561)
++|++++++..+++|.+.++||.||.....++++++.. .
T Consensus 80 ~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~-~---------------------------------------- 118 (268)
T 3hv1_A 80 TIDLIWNGYSVTDERKQSADFTEPYMVNEQVLVTKKSS-G---------------------------------------- 118 (268)
T ss_dssp SCSEECSSCBCCHHHHTTCEECCCCEEECEEEEEEGGG-C----------------------------------------
T ss_pred CCCEEEecCccCHHHHhcCcCcHHHeeCceEEEEECCC-C----------------------------------------
Confidence 99999988999999999999999999999999998654 2
Q ss_pred CCCCccCccchhHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHhHhhheeeeEeeccCCCcCCHHHHHhCCCe
Q 037841 207 FRGPARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWYFVVLVLTQSYTASLTSLLTVQQLQPTITDVKMLIKRGDN 286 (561)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~Ril~~~w~~~~lil~~~Yta~LtS~Lt~~~~~~~I~sl~dL~~~~~~ 286 (561)
|++++|| .|++
T Consensus 119 -------------------------------------------------------------------i~~~~dL--~g~~ 129 (268)
T 3hv1_A 119 -------------------------------------------------------------------IDSVAGM--AGKT 129 (268)
T ss_dssp -------------------------------------------------------------------CCSSGGG--TTCC
T ss_pred -------------------------------------------------------------------CCCHHHh--CCCE
Confidence 7899999 6999
Q ss_pred eEEEeCchHHHHHHhcC------CCccceeecCChHHHHHHhhccccCCceeEEeecchhHHHHHhcCC--cceEEeCcc
Q 037841 287 VGYQKGSFVLGILKQLG------FDERKLVVYNSPEECHELFQKGSANGGIAAAFEEIPYGKLLVGQHC--YKYTMVEPT 358 (561)
Q Consensus 287 vg~~~gs~~~~~l~~~~------~~~~~~~~~~s~~~~~~~l~~g~~~~gv~a~i~~~~~~~~~l~~~~--~~l~~v~~~ 358 (561)
||+..|+....++.+.. ++..+++.+++.++++++|.+|+ +||++.+...+.+++++.. ..+.+++..
T Consensus 130 i~v~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Gr----vDa~i~~~~~~~~~~~~~~~~~~l~~~~~~ 205 (268)
T 3hv1_A 130 LGAQAGSSGYDAFNASPKILKDVVANQKVVQYSTFTQALIDLNSGR----IDGLLIDRVYANYYLEKSGVLDQYNVMPAG 205 (268)
T ss_dssp EEEETTCHHHHHHHHCTTTTTTTSGGGCEEEESSHHHHHHHHHHTS----CSEEEEEHHHHHHHHHHTTCGGGEEEEECS
T ss_pred EEEEeCCchHHHHHHhhHHHhhhcccceEEEeCCHHHHHHHHHcCC----CCEEEeCHHHHHHHHHhCCCCCceEECCCC
Confidence 99999999998887542 34467889999999999999999 9999999999999998874 468888887
Q ss_pred cccCceEEEecCCCC-ChhhHHHHHhhccccchhHHHHHHHcccC
Q 037841 359 FKTAGFGFAFPLHSP-LVHDVSKAILSVTEGDKMKEIEDAWFKKH 402 (561)
Q Consensus 359 ~~~~~~~~~~~k~sp-l~~~in~~Il~l~e~G~~~~i~~kw~~~~ 402 (561)
+...+++++++|+++ +++.||++|.++.++|.+++|.++|++..
T Consensus 206 ~~~~~~~~~~~k~~~~l~~~ln~~l~~l~~~g~~~~i~~k~~~~~ 250 (268)
T 3hv1_A 206 YEGESFAVGARKVDKTLIKKINQGFETLYKNGEFQKISNKWFGED 250 (268)
T ss_dssp SCCEEECCEECTTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHSSC
T ss_pred CCCCcEEEEEcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHhcCCC
Confidence 888889999999998 99999999999999999999999999753
No 15
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=99.90 E-value=1.6e-23 Score=203.12 Aligned_cols=221 Identities=19% Similarity=0.309 Sum_probs=188.3
Q ss_pred CCceEEEEecCCCCCcceEEEeeCCCCCCCceEEEehHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcC
Q 037841 47 NEKKLRIGVPVKKGFSYFVNVTIDPKTQEPTSVTGFCIDVFKAVIQELPYAVAYDFVPYGQPDGTSSGSYNDLIYQVFLG 126 (561)
Q Consensus 47 ~g~~LrVgv~~~~~~~pf~~~~~d~~~~~~~~~~G~~idl~~~i~~~l~f~v~~~~v~~~~~~g~~ngs~~~li~~l~~g 126 (561)
+.++||||+. ++|+||.+.+. ++ ++.|+++|+++++++++|++++ ++.. +|.+++.++.+|
T Consensus 3 ~a~~l~v~~~--~~~~P~~~~~~-----~g-~~~G~~~dl~~~i~~~~g~~~~--~~~~---------~~~~~~~~l~~g 63 (232)
T 3i6v_A 3 LADTVRMGTE--GAYPPYNFIND-----AG-EVDGFERELGDELCKRAGLTCE--WVKN---------DWDSIIPNLVSG 63 (232)
T ss_dssp ---CEEEEEC--SEETTTEEECT-----TS-CEESHHHHHHHHHHHHHTCCEE--EEEC---------CGGGHHHHHHTT
T ss_pred CCCEEEEEEC--CCCCCeeEECC-----CC-CEeeehHHHHHHHHHHcCCceE--EEEC---------CHHHHHHHHHCC
Confidence 3578999997 78999999763 45 8999999999999999998554 4442 599999999999
Q ss_pred cccEEEeceeeecCcceeeeccccccccceEEEEEccCCCCCCcceeccccchhhHHHHHHHHHHHHHHHhhhhcccCCC
Q 037841 127 EFDAAVGDITILLNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWALEHRVNED 206 (561)
Q Consensus 127 ~~D~~vg~~~it~~R~~~vdfT~p~~~~~~~ivvp~~~~~~~~~~~fl~PF~~~vW~~~~~~~i~~~~v~~~l~~~~~~~ 206 (561)
++|+++++++.+++|.+.++||.||+..+.++++++..
T Consensus 64 ~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~------------------------------------------ 101 (232)
T 3i6v_A 64 NYDTIIAGMSITDERDEVIDFTQNYIPPTASSYVATSD------------------------------------------ 101 (232)
T ss_dssp SCSEECSSCBCCHHHHTTSEEEEEEECCCEEEEEESST------------------------------------------
T ss_pred CCCEEEeCCcCCHHHHhhcCcccccccCCeEEEEECCC------------------------------------------
Confidence 99999888999999999999999999999999998442
Q ss_pred CCCCccCccchhHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHhHhhheeeeEeeccCCCcCCHHHHHhCCCe
Q 037841 207 FRGPARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWYFVVLVLTQSYTASLTSLLTVQQLQPTITDVKMLIKRGDN 286 (561)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~Ril~~~w~~~~lil~~~Yta~LtS~Lt~~~~~~~I~sl~dL~~~~~~ 286 (561)
++|| +| +
T Consensus 102 ----------------------------------------------------------------------~~dL--~g-~ 108 (232)
T 3i6v_A 102 ----------------------------------------------------------------------GADL--SG-I 108 (232)
T ss_dssp ----------------------------------------------------------------------TCCT--TS-E
T ss_pred ----------------------------------------------------------------------hHHh--CC-C
Confidence 3456 58 9
Q ss_pred eEEEeCchHHHHHHhcCCCccceeecCChHHHHHHhhccccCCceeEEeecchhHHHHHhcCCcceEEeCc-ccccCceE
Q 037841 287 VGYQKGSFVLGILKQLGFDERKLVVYNSPEECHELFQKGSANGGIAAAFEEIPYGKLLVGQHCYKYTMVEP-TFKTAGFG 365 (561)
Q Consensus 287 vg~~~gs~~~~~l~~~~~~~~~~~~~~s~~~~~~~l~~g~~~~gv~a~i~~~~~~~~~l~~~~~~l~~v~~-~~~~~~~~ 365 (561)
||+..|+....++++. ..+++.+++.++++++|..|+ +||++.+...+.++++++..++.+++. .+...+++
T Consensus 109 igv~~g~~~~~~l~~~---~~~~~~~~~~~~~~~~L~~Gr----vDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (232)
T 3i6v_A 109 VAAQTATIQAGYIAES---GATLVEFATPEETIAAVRNGE----ADAVFADRDYLVPIVAESGGELMFVGDDVPLGGGVG 181 (232)
T ss_dssp EEEETTSHHHHHHHHS---SSEEEEESSHHHHHHHHHTTS----SSEEEEEHHHHHHHHHHTTTSSEEEEEEEECSSCEE
T ss_pred EEEecCchHHHHHHhc---CCeEEEeCCHHHHHHHHHcCC----cCEEEEChHHHHHHHHhCCCCeEEecCCCCCCCcEE
Confidence 9999999999999886 467889999999999999999 999999999999999887334777765 45667899
Q ss_pred EEecCCCC-ChhhHHHHHhhccccchhHHHHHHHcccCCCCCCC
Q 037841 366 FAFPLHSP-LVHDVSKAILSVTEGDKMKEIEDAWFKKHSSCPDA 408 (561)
Q Consensus 366 ~~~~k~sp-l~~~in~~Il~l~e~G~~~~i~~kw~~~~~~c~~~ 408 (561)
++++|++| |+..||++|.++.++|.+++|.++|++....|...
T Consensus 182 ~~~~k~~~~l~~~ln~~l~~l~~~G~~~~i~~k~~~~~~~~~~~ 225 (232)
T 3i6v_A 182 MGLRESDGELRGKFDAAITSMKEDGTLNTMIKKWFGEDAAVYEE 225 (232)
T ss_dssp EEECTTCHHHHHHHHHHHHHHHHTSHHHHHHHHHHCTTSCCC--
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHCChHHHHHHHHcCCCCCcccc
Confidence 99999987 99999999999999999999999999866555443
No 16
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=99.90 E-value=2.7e-23 Score=201.55 Aligned_cols=222 Identities=17% Similarity=0.249 Sum_probs=191.5
Q ss_pred CCceEEEEecCCCCCcceEEEeeCCCCCCCceEEEehHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcC
Q 037841 47 NEKKLRIGVPVKKGFSYFVNVTIDPKTQEPTSVTGFCIDVFKAVIQELPYAVAYDFVPYGQPDGTSSGSYNDLIYQVFLG 126 (561)
Q Consensus 47 ~g~~LrVgv~~~~~~~pf~~~~~d~~~~~~~~~~G~~idl~~~i~~~l~f~v~~~~v~~~~~~g~~ngs~~~li~~l~~g 126 (561)
+.++|+||+. ++|+||.+.+. ++ ++.|+++|+++++++++|++ ++++.. +|.+++.++.+|
T Consensus 13 ~~~~l~v~~~--~~~~P~~~~~~-----~g-~~~G~~~dl~~~i~~~~g~~--~~~~~~---------~~~~~~~~l~~g 73 (239)
T 3kbr_A 13 ESGVLRVATT--GDYKPFSYRTE-----EG-GYAGFDVDMAQRLAESLGAK--LVVVPT---------SWPNLMRDFADD 73 (239)
T ss_dssp HHTEEEEEEC--SEETTTEEECT-----TS-CEESHHHHHHHHHHHHTTCE--EEEEEC---------CTTTHHHHHHTT
T ss_pred hCCeEEEEEC--CCCCCeeEECC-----CC-CEEeehHHHHHHHHHHHCCc--eEEEEe---------CHHHHHHHHHCC
Confidence 3578999997 77899998763 45 89999999999999999985 555552 589999999999
Q ss_pred cccEEEeceeeecCcceeeeccccccccceEEEEEccCCCCCCcceeccccchhhHHHHHHHHHHHHHHHhhhhcccCCC
Q 037841 127 EFDAAVGDITILLNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWALEHRVNED 206 (561)
Q Consensus 127 ~~D~~vg~~~it~~R~~~vdfT~p~~~~~~~ivvp~~~~~~~~~~~fl~PF~~~vW~~~~~~~i~~~~v~~~l~~~~~~~ 206 (561)
++|++++++..+++|.+.++||.||+..+.++++++.....
T Consensus 74 ~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~~~--------------------------------------- 114 (239)
T 3kbr_A 74 RFDIAMSGISINLERQRQAYFSIPYLRDGKTPITLCSEEAR--------------------------------------- 114 (239)
T ss_dssp CCSEECSSCBCCHHHHTTCEECSCSEEECEEEEEEGGGGGG---------------------------------------
T ss_pred CcCEEEeCCcCCHHHcCccccchHHhccCcEEEEECCcccc---------------------------------------
Confidence 99999888999999999999999999999999999765322
Q ss_pred CCCCccCccchhHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHhHhhheeeeEeeccCCCcCCHHHHHhCCCe
Q 037841 207 FRGPARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWYFVVLVLTQSYTASLTSLLTVQQLQPTITDVKMLIKRGDN 286 (561)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~Ril~~~w~~~~lil~~~Yta~LtS~Lt~~~~~~~I~sl~dL~~~~~~ 286 (561)
+++++||..+|++
T Consensus 115 -------------------------------------------------------------------i~~~~dL~~~g~~ 127 (239)
T 3kbr_A 115 -------------------------------------------------------------------FQTLEQIDQPGVT 127 (239)
T ss_dssp -------------------------------------------------------------------GSSHHHHSSTTCE
T ss_pred -------------------------------------------------------------------cCCHHHhcCCCcE
Confidence 7899999544889
Q ss_pred eEEEeCchHHHHHHhcCCCccceeecCChHHHHHHhhccccCCceeEEeecchhHHHHHhcCCcceEEeC--cccccCce
Q 037841 287 VGYQKGSFVLGILKQLGFDERKLVVYNSPEECHELFQKGSANGGIAAAFEEIPYGKLLVGQHCYKYTMVE--PTFKTAGF 364 (561)
Q Consensus 287 vg~~~gs~~~~~l~~~~~~~~~~~~~~s~~~~~~~l~~g~~~~gv~a~i~~~~~~~~~l~~~~~~l~~v~--~~~~~~~~ 364 (561)
||+..|+....++++. ++..+++.+++.++++++|.+|+ +||++.+...+.++++++.. +.++. ..+...++
T Consensus 128 v~~~~g~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~gr----vDa~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 201 (239)
T 3kbr_A 128 AIVNPGGTNEKFARAN-LKKARILVHPDNVTIFQQIVDGK----ADLMMTDAIEARLQSRLHPE-LCAVHPQQPFDFAEK 201 (239)
T ss_dssp EEECTTSHHHHHHHHH-CSSSEEEECCCTTTHHHHHHTTS----CSEEEEEHHHHHHHHHHCTT-EEECCCC-CCCCEEE
T ss_pred EEEcCCCcHHHHHHHh-CCCCceEEeCCHHHHHHHHHcCC----cCEEEEchHHHHHHHHhCCC-cEEecCCCCccccce
Confidence 9999999999999874 55678899999999999999999 99999999999999988764 55554 44677788
Q ss_pred EEEecCCCC-ChhhHHHHHhhccccchhHHHHHHHcc
Q 037841 365 GFAFPLHSP-LVHDVSKAILSVTEGDKMKEIEDAWFK 400 (561)
Q Consensus 365 ~~~~~k~sp-l~~~in~~Il~l~e~G~~~~i~~kw~~ 400 (561)
+++++| .+ +.+.||++|.++.++|.+++|.++|++
T Consensus 202 ~~~~~k-~~~l~~~ln~~l~~l~~~g~~~~i~~k~~~ 237 (239)
T 3kbr_A 202 AYLLPR-DEAFKRYVDQWLHIAEQSGLLRQRMEHWLE 237 (239)
T ss_dssp CCEECS-CHHHHHHHHHHHHHHHHHTHHHHHHHHHC-
T ss_pred EEEEcC-CHHHHHHHHHHHHHHHHCCcHHHHHHHHhc
Confidence 999999 55 999999999999999999999999995
No 17
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=99.90 E-value=5.6e-23 Score=199.78 Aligned_cols=222 Identities=18% Similarity=0.279 Sum_probs=194.0
Q ss_pred CCceEEEEecCCCCCcceEEEeeCCCCCCCceEEEehHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcC
Q 037841 47 NEKKLRIGVPVKKGFSYFVNVTIDPKTQEPTSVTGFCIDVFKAVIQELPYAVAYDFVPYGQPDGTSSGSYNDLIYQVFLG 126 (561)
Q Consensus 47 ~g~~LrVgv~~~~~~~pf~~~~~d~~~~~~~~~~G~~idl~~~i~~~l~f~v~~~~v~~~~~~g~~ngs~~~li~~l~~g 126 (561)
..++|+||+. ++|+||.+.+. ++ ++.|+++|+++++++++|+ +++++.. +|.+++.++.+|
T Consensus 9 ~~~~l~v~~~--~~~~P~~~~~~-----~g-~~~G~~~dl~~~i~~~~g~--~~~~~~~---------~~~~~~~~l~~g 69 (242)
T 3del_B 9 NSEKFIVGTN--ATYPPFEFVDK-----RG-EVVGFDIDLAREISNKLGK--TLDVREF---------SFDALILNLKQH 69 (242)
T ss_dssp --CEEEEEEC--SCBTTTBEECT-----TS-CEESHHHHHHHHHHHHHTC--EEEEEEC---------CGGGHHHHHHTT
T ss_pred cCCcEEEEeC--CCCCCeeEECC-----CC-CEEEeeHHHHHHHHHHcCC--ceEEEEc---------CHHHHHHHHhCC
Confidence 3578999996 78999998763 45 8999999999999999997 5555552 599999999999
Q ss_pred cccEEEeceeeecCcceeeecccccc--ccceEEEEEccCCCCCCcceeccccchhhHHHHHHHHHHHHHHHhhhhcccC
Q 037841 127 EFDAAVGDITILLNRSNYVDFTLPYT--ESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWALEHRVN 204 (561)
Q Consensus 127 ~~D~~vg~~~it~~R~~~vdfT~p~~--~~~~~ivvp~~~~~~~~~~~fl~PF~~~vW~~~~~~~i~~~~v~~~l~~~~~ 204 (561)
++|++++++..+++|.+.++| .||+ ..+.++++++.. .
T Consensus 70 ~~D~~~~~~~~~~~r~~~~~~-~p~~~~~~~~~~~~~~~~-~-------------------------------------- 109 (242)
T 3del_B 70 RIDAVITGMSITPSRLKEILM-IPYYGEEIKHLVLVFKGE-N-------------------------------------- 109 (242)
T ss_dssp SSSEECSSBBCCHHHHTTEEE-EEEEEEEESEEEEEEESC-C--------------------------------------
T ss_pred CcCEEEecCcCCHHHHhcccc-eeeeecCCceEEEEeCCC-C--------------------------------------
Confidence 999999889999999999999 9999 889999998662 1
Q ss_pred CCCCCCccCccchhHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHhHhhheeeeEeeccCCCcCCHHHHHhCC
Q 037841 205 EDFRGPARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWYFVVLVLTQSYTASLTSLLTVQQLQPTITDVKMLIKRG 284 (561)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~Ril~~~w~~~~lil~~~Yta~LtS~Lt~~~~~~~I~sl~dL~~~~ 284 (561)
+++++|| +|
T Consensus 110 ---------------------------------------------------------------------i~~~~dL--~g 118 (242)
T 3del_B 110 ---------------------------------------------------------------------KHPLPLT--QY 118 (242)
T ss_dssp ---------------------------------------------------------------------SCCCCGG--GS
T ss_pred ---------------------------------------------------------------------CCCHHHh--CC
Confidence 6889999 68
Q ss_pred CeeEEEeCchHHHHHHhcCCCccceeecCChHHHHHHhhccccCCceeEEeecchhHHHHHhcCCcceEEeCcccccCc-
Q 037841 285 DNVGYQKGSFVLGILKQLGFDERKLVVYNSPEECHELFQKGSANGGIAAAFEEIPYGKLLVGQHCYKYTMVEPTFKTAG- 363 (561)
Q Consensus 285 ~~vg~~~gs~~~~~l~~~~~~~~~~~~~~s~~~~~~~l~~g~~~~gv~a~i~~~~~~~~~l~~~~~~l~~v~~~~~~~~- 363 (561)
++||+..|+....++++ .+..+++.+++.++++++|..|+ +||++.+...+.++++++.. +.+++..+....
T Consensus 119 ~~i~v~~g~~~~~~l~~--~~~~~~~~~~~~~~~~~~L~~g~----vDa~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 191 (242)
T 3del_B 119 RSVAVQTGTYQEAYLQS--LSEVHIRSFDSTLEVLMEVMHGK----SPVAVLEPSIAQVVLKDFPA-LSTATIDLPEDQW 191 (242)
T ss_dssp SCEEEETTSHHHHHHHH--STTCCEEEESSHHHHHHHHHTTS----SSEEEECHHHHHHHGGGCTT-EEEEEEECCGGGC
T ss_pred CEEEEEcCcHHHHHHHh--CCCceEEEECCHHHHHHHHHcCC----CCEEEecHHHHHHHHHhCCC-eEEecCccCcccc
Confidence 99999999999999987 56678899999999999999999 99999999999999998875 778877777777
Q ss_pred ---eEEEecCCCC-ChhhHHHHHhhccccchhHHHHHHHcccCCCC
Q 037841 364 ---FGFAFPLHSP-LVHDVSKAILSVTEGDKMKEIEDAWFKKHSSC 405 (561)
Q Consensus 364 ---~~~~~~k~sp-l~~~in~~Il~l~e~G~~~~i~~kw~~~~~~c 405 (561)
++++++|+++ +++.||++|.++.++|.+++|.+||+.....+
T Consensus 192 ~~~~~~~~~k~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~~~~~~ 237 (242)
T 3del_B 192 VLGYGIGVASDRPALALKIEAAVQEIRKEGVLAELEQKWGLNNLEH 237 (242)
T ss_dssp EEEEEEEEETTCHHHHHHHHHHHHHHHHTTHHHHHHHHTTGGGCSS
T ss_pred cceEEEEEeCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHCCCCCcc
Confidence 8999999988 99999999999999999999999999754433
No 18
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=99.89 E-value=1.8e-22 Score=194.40 Aligned_cols=222 Identities=22% Similarity=0.341 Sum_probs=189.5
Q ss_pred CceEEEEecCCCCCcceEEEeeCCCCCCCceEEEehHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCc
Q 037841 48 EKKLRIGVPVKKGFSYFVNVTIDPKTQEPTSVTGFCIDVFKAVIQELPYAVAYDFVPYGQPDGTSSGSYNDLIYQVFLGE 127 (561)
Q Consensus 48 g~~LrVgv~~~~~~~pf~~~~~d~~~~~~~~~~G~~idl~~~i~~~l~f~v~~~~v~~~~~~g~~ngs~~~li~~l~~g~ 127 (561)
.++|+||+. +|+||.+.+.+ .++ ++.|+++|+++.+++++|++ ++++... +|.+++.++.+|+
T Consensus 3 ~~~l~v~~~---~~~P~~~~~~~---~~g-~~~G~~~dl~~~i~~~~g~~--~~~~~~~--------~~~~~~~~l~~g~ 65 (233)
T 1ii5_A 3 AMALKVGVV---GNPPFVFYGEG---KNA-AFTGISLDVWRAVAESQKWN--SEYVRQN--------SISAGITAVAEGE 65 (233)
T ss_dssp SCCEEEEEC---CCTTTCEEC---------CEESHHHHHHHHHHHHHTCC--EEEEECS--------CHHHHHHHHHTTS
T ss_pred CceEEEEec---CCCCeEEEecC---CCC-CEEEEeHHHHHHHHHHcCCc--EEEEEeC--------CHHHHHHHHHCCC
Confidence 468999997 48889887211 245 89999999999999999975 5555532 6999999999999
Q ss_pred ccEEEeceeeecCcc--eeeeccccccccceEEEEEccCCCCCCcceeccccchhhHHHHHHHHHHHHHHHhhhhcccCC
Q 037841 128 FDAAVGDITILLNRS--NYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWALEHRVNE 205 (561)
Q Consensus 128 ~D~~vg~~~it~~R~--~~vdfT~p~~~~~~~ivvp~~~~~~~~~~~fl~PF~~~vW~~~~~~~i~~~~v~~~l~~~~~~ 205 (561)
+|++++++..+.+|. +.++|+.||.....++++++.....
T Consensus 66 ~D~~~~~~~~~~~r~~~~~~~~s~p~~~~~~~~~~~~~~~~~-------------------------------------- 107 (233)
T 1ii5_A 66 LDILIGPISVTPERAAIEGITFTQPYFSSGIGLLIPGTATPL-------------------------------------- 107 (233)
T ss_dssp CSEEEEEEECCHHHHTSTTEEECCCCEEEEEEEEEEGGGTTT--------------------------------------
T ss_pred cCEEEeeeecCccccccceeEEccceeecCeEEEEECCCCCC--------------------------------------
Confidence 999998888999998 9999999999999999999665321
Q ss_pred CCCCCccCccchhHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHhHhhheeeeEeeccCCCcCCHHHHHhCCC
Q 037841 206 DFRGPARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWYFVVLVLTQSYTASLTSLLTVQQLQPTITDVKMLIKRGD 285 (561)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~Ril~~~w~~~~lil~~~Yta~LtS~Lt~~~~~~~I~sl~dL~~~~~ 285 (561)
+++++|| .|+
T Consensus 108 --------------------------------------------------------------------i~~~~dL--~g~ 117 (233)
T 1ii5_A 108 --------------------------------------------------------------------FRSVGDL--KNK 117 (233)
T ss_dssp --------------------------------------------------------------------CSSGGGG--TTC
T ss_pred --------------------------------------------------------------------CCCHHHh--CCC
Confidence 7899999 699
Q ss_pred eeEEEeCchHHHHHHhcCCCccceeecCChHHHHHHhhccccCCceeEEeecchhHHHHHhcCC-cceEEeCcccccCce
Q 037841 286 NVGYQKGSFVLGILKQLGFDERKLVVYNSPEECHELFQKGSANGGIAAAFEEIPYGKLLVGQHC-YKYTMVEPTFKTAGF 364 (561)
Q Consensus 286 ~vg~~~gs~~~~~l~~~~~~~~~~~~~~s~~~~~~~l~~g~~~~gv~a~i~~~~~~~~~l~~~~-~~l~~v~~~~~~~~~ 364 (561)
+||+..|+....++++. ..+++.+.+.++++++|..|+ +||++.+...+.+++++.. ..+.+++..+....+
T Consensus 118 ~v~~~~g~~~~~~l~~~---~~~~~~~~~~~~~~~~l~~g~----vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (233)
T 1ii5_A 118 EVAVVRDTTAVDWANFY---QADVRETNNLTAAITLLQKKQ----VEAVMFDRPALIYYTRQNPNLNLEVTEIRVSLEPY 190 (233)
T ss_dssp EEEEETTSHHHHHHHHT---TCEEEEESSHHHHHHHHHTTS----CSEEEEEHHHHHHHHHHCGGGCEEECSCCSEEEEE
T ss_pred eEEEECCccHHHHHHHc---CCCeEEcCCHHHHHHHHHcCC----ccEEEeCHHHHHHHHHhCCCCcEEEeCccccccce
Confidence 99999999999988875 346788999999999999999 9999999999999888764 258888877777889
Q ss_pred EEEecCCCCChhhHHHHHhhccccchhHHHHHHHccc
Q 037841 365 GFAFPLHSPLVHDVSKAILSVTEGDKMKEIEDAWFKK 401 (561)
Q Consensus 365 ~~~~~k~spl~~~in~~Il~l~e~G~~~~i~~kw~~~ 401 (561)
+++++|++++.+.+|++|.++.++|.+++|.++|+..
T Consensus 191 ~~~~~k~~~l~~~~~~~l~~l~~~g~~~~i~~k~~~~ 227 (233)
T 1ii5_A 191 GFVLKENSPLQKTINVEMLNLLYSRVIAEFTERWLGP 227 (233)
T ss_dssp EEEEETTCTTHHHHHHHHHHHHHTTHHHHHHHHHHC-
T ss_pred EEEEcCCchHHHHHHHHHHHHHhCCcHHHHHHHHcCC
Confidence 9999999999999999999999999999999999964
No 19
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=99.89 E-value=1.1e-22 Score=194.77 Aligned_cols=219 Identities=23% Similarity=0.343 Sum_probs=186.2
Q ss_pred ceEEEEecCCCCCcceEEEeeCCCCCCCceEEEehHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCcc
Q 037841 49 KKLRIGVPVKKGFSYFVNVTIDPKTQEPTSVTGFCIDVFKAVIQELPYAVAYDFVPYGQPDGTSSGSYNDLIYQVFLGEF 128 (561)
Q Consensus 49 ~~LrVgv~~~~~~~pf~~~~~d~~~~~~~~~~G~~idl~~~i~~~l~f~v~~~~v~~~~~~g~~ngs~~~li~~l~~g~~ 128 (561)
++||||+. ++|+||.+.+. ++ ++.|+++|+++++++++|++++ ++.. +|.+++.++.+|++
T Consensus 2 ~~l~v~~~--~~~~P~~~~~~-----~g-~~~G~~~dl~~~i~~~~g~~~~--~~~~---------~~~~~~~~l~~g~~ 62 (227)
T 3tql_A 2 DTIKFATE--ATYPPYVYMGP-----SG-QVEGFGADIVKAVCKQMQAVCT--ISNQ---------PWDSLIPSLKLGKF 62 (227)
T ss_dssp CEEEEEEC--SCBTTTBEEC-------C-CEESHHHHHHHHHHHHTTCEEE--EEEC---------CHHHHHHHHHHTSC
T ss_pred ceEEEEEc--CCCCCeeEECC-----CC-CcccchHHHHHHHHHHhCCeEE--EEeC---------CHHHHHHHHhCCCC
Confidence 57999997 57999998763 45 8999999999999999998554 4442 59999999999999
Q ss_pred cEEEeceeeecCcceeeeccccccccceEEEEEccCCCCCCcceeccccchhhHHHHHHHHHHHHHHHhhhhcccCCCCC
Q 037841 129 DAAVGDITILLNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWALEHRVNEDFR 208 (561)
Q Consensus 129 D~~vg~~~it~~R~~~vdfT~p~~~~~~~ivvp~~~~~~~~~~~fl~PF~~~vW~~~~~~~i~~~~v~~~l~~~~~~~~~ 208 (561)
|++++++..+++|.+.+.||.||.....++++++....
T Consensus 63 D~~~~~~~~~~~r~~~~~~s~p~~~~~~~l~~~~~~~~------------------------------------------ 100 (227)
T 3tql_A 63 DALFGGMNITTARQKEVDFTDPYYTNSVSFIADKNTPL------------------------------------------ 100 (227)
T ss_dssp SEECSSCBCCTTGGGTEEECSCSBCCEEEEEEETTSCC------------------------------------------
T ss_pred CEEEecCcCCHhHHhheecccceeccceEEEEeCCCCC------------------------------------------
Confidence 99988899999999999999999999999999966532
Q ss_pred CCccCccchhHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHhHhhheeeeEeeccCCCcCCHHHHHhCCCeeE
Q 037841 209 GPARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWYFVVLVLTQSYTASLTSLLTVQQLQPTITDVKMLIKRGDNVG 288 (561)
Q Consensus 209 ~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~Ril~~~w~~~~lil~~~Yta~LtS~Lt~~~~~~~I~sl~dL~~~~~~vg 288 (561)
+++++|| +|++||
T Consensus 101 -----------------------------------------------------------------~~~~~dL--~g~~v~ 113 (227)
T 3tql_A 101 -----------------------------------------------------------------TLSKQGL--KGKIIG 113 (227)
T ss_dssp -----------------------------------------------------------------CCSTTTT--TTCEEE
T ss_pred -----------------------------------------------------------------CCCHHHh--CCCEEE
Confidence 3788899 699999
Q ss_pred EEeCchHHHHHHhcCCCccceeecCChHHHHHHhhccccCCceeEEeecchhHHHHHhcCCc-ceEEeCcccc-----cC
Q 037841 289 YQKGSFVLGILKQLGFDERKLVVYNSPEECHELFQKGSANGGIAAAFEEIPYGKLLVGQHCY-KYTMVEPTFK-----TA 362 (561)
Q Consensus 289 ~~~gs~~~~~l~~~~~~~~~~~~~~s~~~~~~~l~~g~~~~gv~a~i~~~~~~~~~l~~~~~-~l~~v~~~~~-----~~ 362 (561)
+..|+....++++......+++.+.+.++++++|.+|+ +||++.+...+.+++++... .+.+++..+. ..
T Consensus 114 ~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~gr----vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (227)
T 3tql_A 114 VQGGTTFDSYLQDSFGNSITIQRYPSEEDALMDLTSGR----VDAVVGDTPLIKQWLKQNGRREYVLIGKPVNDPNYFGK 189 (227)
T ss_dssp EETTSHHHHHHHHHHGGGSEEEEESSHHHHHHHHTTTS----SSEEESCHHHHHHHHHHTTCCSEEEEEEECCCGGGCCS
T ss_pred EEecccHHHHHHHhccccceEEEcCCHHHHHHHHHcCC----cCEEEeChHHHHHHHHhCCCCCEEEecCcccCcccccc
Confidence 99999999988774322268889999999999999999 99999999999999887743 3666654433 34
Q ss_pred ceEEEecCCCC-ChhhHHHHHhhccccchhHHHHHHHc
Q 037841 363 GFGFAFPLHSP-LVHDVSKAILSVTEGDKMKEIEDAWF 399 (561)
Q Consensus 363 ~~~~~~~k~sp-l~~~in~~Il~l~e~G~~~~i~~kw~ 399 (561)
+++++++|++| +.+.||++|.++.++|.++++.++||
T Consensus 190 ~~~~~~~~~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~ 227 (227)
T 3tql_A 190 GVGIAVKKGNQALLLKLNKALAAIKANGVYAAIVQKYF 227 (227)
T ss_dssp CBCCEEETTCHHHHHHHHHHHHHHHHTSHHHHHHHHHC
T ss_pred ceEEEEcCCCHHHHHHHHHHHHHHHhCChHHHHHHhhC
Confidence 56899999988 99999999999999999999999996
No 20
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=99.89 E-value=2.3e-22 Score=193.73 Aligned_cols=222 Identities=14% Similarity=0.279 Sum_probs=194.1
Q ss_pred CCCceEEEEecCCCCCcceEEEeeCCCCCCCceEEEehHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHc
Q 037841 46 TNEKKLRIGVPVKKGFSYFVNVTIDPKTQEPTSVTGFCIDVFKAVIQELPYAVAYDFVPYGQPDGTSSGSYNDLIYQVFL 125 (561)
Q Consensus 46 ~~g~~LrVgv~~~~~~~pf~~~~~d~~~~~~~~~~G~~idl~~~i~~~l~f~v~~~~v~~~~~~g~~ngs~~~li~~l~~ 125 (561)
...++|+||+. ++|+||.+.+. ++ ++.|+++|+++++++++|++++++.. +|..++.++.+
T Consensus 8 ~~~~~l~v~~~--~~~~P~~~~~~-----~g-~~~G~~~dl~~~i~~~~g~~~~~~~~-----------~~~~~~~~l~~ 68 (234)
T 3h7m_A 8 DRHRTIVVGGD--RDYPPYEFIDQ-----NG-KPAGYNVELTRAIAEVMGMTVEFRLG-----------AWSEMFSALKS 68 (234)
T ss_dssp CSSSCEEEEEE--TEETTTEEECT-----TS-CEESHHHHHHHHHHHHHTCCEEEEEE-----------CGGGHHHHHHT
T ss_pred CCCCEEEEEec--CCCCCeEEECC-----CC-CEeeeEHHHHHHHHHHcCCceEEEeC-----------CHHHHHHHHhC
Confidence 34678999996 78899998763 45 89999999999999999986666532 58999999999
Q ss_pred CcccEEEeceeeecCcceeeeccccccccceEEEEEccCCCCCCcceeccccchhhHHHHHHHHHHHHHHHhhhhcccCC
Q 037841 126 GEFDAAVGDITILLNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWALEHRVNE 205 (561)
Q Consensus 126 g~~D~~vg~~~it~~R~~~vdfT~p~~~~~~~ivvp~~~~~~~~~~~fl~PF~~~vW~~~~~~~i~~~~v~~~l~~~~~~ 205 (561)
|++|++ .++..+++|.+.+.||.||.....++++++....
T Consensus 69 g~~D~~-~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~~--------------------------------------- 108 (234)
T 3h7m_A 69 GRVDVL-QGISWSEKRARQIDFTPPHTIVYHAIFARRDSPP--------------------------------------- 108 (234)
T ss_dssp TSSSEE-EEEECCHHHHTTEEEEEEEEEEEEEEEEESSSCC---------------------------------------
T ss_pred CCeeEE-EeccCCHhHHhhcCCCccccccceEEEEECCCCC---------------------------------------
Confidence 999996 5589999999999999999999999999966542
Q ss_pred CCCCCccCccchhHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHhHhhheeeeEeeccCCCcCCHHHHHhCCC
Q 037841 206 DFRGPARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWYFVVLVLTQSYTASLTSLLTVQQLQPTITDVKMLIKRGD 285 (561)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~Ril~~~w~~~~lil~~~Yta~LtS~Lt~~~~~~~I~sl~dL~~~~~ 285 (561)
+++++|| +|+
T Consensus 109 --------------------------------------------------------------------~~~~~dL--~g~ 118 (234)
T 3h7m_A 109 --------------------------------------------------------------------AAGLEDL--RGR 118 (234)
T ss_dssp --------------------------------------------------------------------CSSGGGG--TTS
T ss_pred --------------------------------------------------------------------CCCHHHh--CCC
Confidence 6899999 699
Q ss_pred eeEEEeCchHHHHHHhcCCCccceeecCChHHHHHHhhccccCCceeEEeecchhHHHHHhcC-CcceEEeCcccccCce
Q 037841 286 NVGYQKGSFVLGILKQLGFDERKLVVYNSPEECHELFQKGSANGGIAAAFEEIPYGKLLVGQH-CYKYTMVEPTFKTAGF 364 (561)
Q Consensus 286 ~vg~~~gs~~~~~l~~~~~~~~~~~~~~s~~~~~~~l~~g~~~~gv~a~i~~~~~~~~~l~~~-~~~l~~v~~~~~~~~~ 364 (561)
+||+..|+....++++. .+..+++.+++.++++++|.+|+ +|+++.+...+.+++++. ...+.+++..+...++
T Consensus 119 ~i~~~~g~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~g~----vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (234)
T 3h7m_A 119 KVALHRDGIMHEYLAER-GYGKDLVLTPTPADALRLLAAGG----CDYAVVAMVPGMYIIRENRLTNLVPVARSIAAQRY 193 (234)
T ss_dssp CEEEETTSHHHHHHHTT-TCGGGEEEESSHHHHHHHHHTTS----SSEEEEEHHHHHHHHHHTTCTTEEEEEEEEEEEEE
T ss_pred EEEEEeCchHHHHHHhc-CCCceEEEeCCHHHHHHHHHcCC----ceEEEeccHHHHHHHHhcCCCceEEeccccCCCce
Confidence 99999999999999875 34568889999999999999999 999999999999888876 3357788877788889
Q ss_pred EEEecCCCC-ChhhHHHHHhhccccchhHHHHHHHccc
Q 037841 365 GFAFPLHSP-LVHDVSKAILSVTEGDKMKEIEDAWFKK 401 (561)
Q Consensus 365 ~~~~~k~sp-l~~~in~~Il~l~e~G~~~~i~~kw~~~ 401 (561)
+++++|++| +++.||++|.++.++|.+++|.++|++.
T Consensus 194 ~~~~~~~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~~ 231 (234)
T 3h7m_A 194 GYAVRQGDAELLARFSEGLAILRKTGQYEAIRAKWLGV 231 (234)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHTHHHHHHHHSTTC
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHcCcHHHHHHHhccc
Confidence 999999988 9999999999999999999999999964
No 21
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=99.88 E-value=4.9e-22 Score=190.21 Aligned_cols=220 Identities=22% Similarity=0.334 Sum_probs=190.5
Q ss_pred ceEEEEecCCCCCcceEEEeeCCCCCCCceEEEehHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCcc
Q 037841 49 KKLRIGVPVKKGFSYFVNVTIDPKTQEPTSVTGFCIDVFKAVIQELPYAVAYDFVPYGQPDGTSSGSYNDLIYQVFLGEF 128 (561)
Q Consensus 49 ~~LrVgv~~~~~~~pf~~~~~d~~~~~~~~~~G~~idl~~~i~~~l~f~v~~~~v~~~~~~g~~ngs~~~li~~l~~g~~ 128 (561)
++|+||+. ++|+||.+.+ + + ++.|+++|+++++++++|++++++.. +|.+++.++.+|++
T Consensus 3 ~~l~v~~~--~~~~P~~~~~-----~-g-~~~G~~~dl~~~~~~~~g~~~~~~~~-----------~~~~~~~~l~~g~~ 62 (226)
T 1wdn_A 3 KKLVVATD--TAFVPFEFKQ-----G-D-LYVGFDVDLWAAIAKELKLDYELKPM-----------DFSGIIPALQTKNV 62 (226)
T ss_dssp -CEEEEEE--SSBTTTBEEE-----T-T-EEESHHHHHHHHHHHHHTCCEEEEEE-----------CGGGHHHHHHTTSS
T ss_pred ceEEEEEC--CCCCCeeEec-----C-C-cEEEeeHHHHHHHHHHhCCEEEEEEC-----------CHHHHHHHHhCCCC
Confidence 57999997 7889998875 2 4 89999999999999999986555532 58999999999999
Q ss_pred cEEEeceeeecCcceeeeccccccccceEEEEEccCCCCCCcceeccccchhhHHHHHHHHHHHHHHHhhhhcccCCCCC
Q 037841 129 DAAVGDITILLNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWALEHRVNEDFR 208 (561)
Q Consensus 129 D~~vg~~~it~~R~~~vdfT~p~~~~~~~ivvp~~~~~~~~~~~fl~PF~~~vW~~~~~~~i~~~~v~~~l~~~~~~~~~ 208 (561)
|++++++..+++|.+.++|+.||.....++++++..+.
T Consensus 63 D~~~~~~~~~~~r~~~~~~~~p~~~~~~~~~~~~~~~~------------------------------------------ 100 (226)
T 1wdn_A 63 DLALAGITITDERKKAIDFSDGYYKSGLLVMVKANNND------------------------------------------ 100 (226)
T ss_dssp SEEEEEEECCHHHHTTSEECSCCEEEEEEEEEETTCCS------------------------------------------
T ss_pred CEEEEcCcCCHHHhCccccccchhcCceEEEEeCCCCC------------------------------------------
Confidence 99988888899999999999999999999999866431
Q ss_pred CCccCccchhHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHhHhhheeeeEeeccCCCcCCHHHHHhCCCeeE
Q 037841 209 GPARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWYFVVLVLTQSYTASLTSLLTVQQLQPTITDVKMLIKRGDNVG 288 (561)
Q Consensus 209 ~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~Ril~~~w~~~~lil~~~Yta~LtS~Lt~~~~~~~I~sl~dL~~~~~~vg 288 (561)
+++++|| .|++||
T Consensus 101 -----------------------------------------------------------------i~~~~dL--~g~~i~ 113 (226)
T 1wdn_A 101 -----------------------------------------------------------------VKSVKDL--DGKVVA 113 (226)
T ss_dssp -----------------------------------------------------------------CSSSTTT--TTCEEE
T ss_pred -----------------------------------------------------------------CCCHHHh--CCCEEE
Confidence 6889999 689999
Q ss_pred EEeCchHHHHHHhcCCCccceeecCChHHHHHHhhccccCCceeEEeecchhHHHHHhcCC-cceEEeCcccccCceEEE
Q 037841 289 YQKGSFVLGILKQLGFDERKLVVYNSPEECHELFQKGSANGGIAAAFEEIPYGKLLVGQHC-YKYTMVEPTFKTAGFGFA 367 (561)
Q Consensus 289 ~~~gs~~~~~l~~~~~~~~~~~~~~s~~~~~~~l~~g~~~~gv~a~i~~~~~~~~~l~~~~-~~l~~v~~~~~~~~~~~~ 367 (561)
+..|+....++++. ++..+++.+.+.++++++|..|+ +|+++.+...+.+++++.. ..+.+++..+....++++
T Consensus 114 ~~~g~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~g~----vDa~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 188 (226)
T 1wdn_A 114 VKSGTGSVDYAKAN-IKTKDLRQFPNIDNAYMELGTNR----ADAVLHDTPNILYFIKTAGNGQFKAVGDSLEAQQYGIA 188 (226)
T ss_dssp EETTSHHHHHHHHH-CCCSEEEEESSHHHHHHHHHTTS----CSEEEEEHHHHHHHHHTTTTTTEEEEEEEEEEEEEEEE
T ss_pred EEcCCcHHHHHHHh-CCCceEEEeCCHHHHHHHHHcCC----cCEEEeCcHHHHHHHHhCCCCceEEecCCcccCceEEE
Confidence 99999999988875 34567788999999999999999 9999999999998888763 357777777777788999
Q ss_pred ecCCCC-ChhhHHHHHhhccccchhHHHHHHHcccC
Q 037841 368 FPLHSP-LVHDVSKAILSVTEGDKMKEIEDAWFKKH 402 (561)
Q Consensus 368 ~~k~sp-l~~~in~~Il~l~e~G~~~~i~~kw~~~~ 402 (561)
++|++| +.+.++++|.++.++|.+++|.++|++..
T Consensus 189 ~~k~~~~l~~~~~~~l~~l~~~g~~~~i~~k~~~~~ 224 (226)
T 1wdn_A 189 FPKGSDELRDKVNGALKTLRENGTYNEIYKKWFGTE 224 (226)
T ss_dssp ECTTCHHHHHHHHHHHHHHHHTSHHHHHHHHHHSSC
T ss_pred EeCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCC
Confidence 999986 99999999999999999999999999654
No 22
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=99.88 E-value=3.2e-22 Score=198.39 Aligned_cols=220 Identities=17% Similarity=0.287 Sum_probs=189.1
Q ss_pred CceEEEEecCCCCCcceEEEeeCCCCCCCceEEEehHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCc
Q 037841 48 EKKLRIGVPVKKGFSYFVNVTIDPKTQEPTSVTGFCIDVFKAVIQELPYAVAYDFVPYGQPDGTSSGSYNDLIYQVFLGE 127 (561)
Q Consensus 48 g~~LrVgv~~~~~~~pf~~~~~d~~~~~~~~~~G~~idl~~~i~~~l~f~v~~~~v~~~~~~g~~ngs~~~li~~l~~g~ 127 (561)
.++||||+. ++|+||.+.+. ++ ++.|+++|+++++++++|++ +++++.. +|.+++.++.+|+
T Consensus 31 ~~~l~v~~~--~~~~P~~~~~~-----~g-~~~G~~~dl~~~i~~~lg~~--~~~~~~~--------~~~~~~~~l~~G~ 92 (267)
T 3mpk_A 31 HPVVKVAVL--NLFAPFTLFRT-----DE-QFGGISAAVLQLLQLRTGLD--FEIIGVD--------TVEELIAKLRSGE 92 (267)
T ss_dssp CSEEEEEEE--TEETTTEECCT-----TC-CCBSHHHHHHHHHHHHHCCE--EEEEEES--------SHHHHHHHHHHTS
T ss_pred CCcEEEEeC--CCCCCeEEECC-----CC-cEeeeHHHHHHHHHHHHCCe--EEEEecC--------CHHHHHHHHHCCC
Confidence 678999997 67999998753 45 89999999999999999975 4555432 7999999999999
Q ss_pred ccEEEeceeeecCcceeeeccccccccceEEEEEccCCCCCCcceeccccchhhHHHHHHHHHHHHHHHhhhhcccCCCC
Q 037841 128 FDAAVGDITILLNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWALEHRVNEDF 207 (561)
Q Consensus 128 ~D~~vg~~~it~~R~~~vdfT~p~~~~~~~ivvp~~~~~~~~~~~fl~PF~~~vW~~~~~~~i~~~~v~~~l~~~~~~~~ 207 (561)
+|+++ +++.+++|.+.+.||.||...+.++++++....
T Consensus 93 ~D~~~-~~~~t~~r~~~~~fs~p~~~~~~~l~~~~~~~~----------------------------------------- 130 (267)
T 3mpk_A 93 ADMAG-ALFVNSARESFLSFSRPYVRNGMVIVTRQDPDA----------------------------------------- 130 (267)
T ss_dssp CSEEE-EEECCGGGTTTEEECSCSEEECEEEEEESSTTS-----------------------------------------
T ss_pred ccEEe-cccCChhhhcceEechhhccCceEEEEECCCCC-----------------------------------------
Confidence 99976 699999999999999999999999999966432
Q ss_pred CCCccCccchhHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHhHhhheeeeEeeccCCCcCCHHHHHhCCCee
Q 037841 208 RGPARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWYFVVLVLTQSYTASLTSLLTVQQLQPTITDVKMLIKRGDNV 287 (561)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~Ril~~~w~~~~lil~~~Yta~LtS~Lt~~~~~~~I~sl~dL~~~~~~v 287 (561)
+++++|| +|++|
T Consensus 131 ------------------------------------------------------------------i~~~~dL--~g~~i 142 (267)
T 3mpk_A 131 ------------------------------------------------------------------PVDADHL--DGRTV 142 (267)
T ss_dssp ------------------------------------------------------------------CSSGGGC--TTCEE
T ss_pred ------------------------------------------------------------------CCCHHHH--CCCEE
Confidence 6899999 69999
Q ss_pred EEEeCchHHHHHHhcCCCccceeecCChHHHHHHhhccccCCceeEEeecchhHHHHHhcC-CcceEEeCccc-ccCceE
Q 037841 288 GYQKGSFVLGILKQLGFDERKLVVYNSPEECHELFQKGSANGGIAAAFEEIPYGKLLVGQH-CYKYTMVEPTF-KTAGFG 365 (561)
Q Consensus 288 g~~~gs~~~~~l~~~~~~~~~~~~~~s~~~~~~~l~~g~~~~gv~a~i~~~~~~~~~l~~~-~~~l~~v~~~~-~~~~~~ 365 (561)
|+..|+....++++. ++..+++.+++.++++++|.+|+ +||++.+...+.+++++. ..++.+.+... ...+++
T Consensus 143 ~v~~g~~~~~~l~~~-~~~~~~~~~~~~~~~l~~L~~Gr----vDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 217 (267)
T 3mpk_A 143 ALVRNSAAIPLLQRR-YPQAKVVTADNPSEAMLMVANGQ----ADAVVQTQISASYYVNRYFAGKLRIASALDLPPAEIA 217 (267)
T ss_dssp EEETTCTHHHHHHHH-CTTSEEEEESSHHHHHHHHHHTS----CSEEEEEHHHHHHHHHHHCTTTEEEEEECSSCCEEEE
T ss_pred EEeCCchhHHHHHHh-CCCcEEEEeCCHHHHHHHHHcCC----CCEEEecHHHHHHHHHhcCCCceEEEeccCCCceeEE
Confidence 999999999999874 55678899999999999999999 999999999999988874 33477765533 467789
Q ss_pred EEecCCCC-ChhhHHHHHhhccccchhHHHHHHHccc
Q 037841 366 FAFPLHSP-LVHDVSKAILSVTEGDKMKEIEDAWFKK 401 (561)
Q Consensus 366 ~~~~k~sp-l~~~in~~Il~l~e~G~~~~i~~kw~~~ 401 (561)
++++|++| +...||++|.++.++| +++|.++|++.
T Consensus 218 ~~~~k~~~~l~~~ln~~l~~l~~~~-~~~i~~kw~~~ 253 (267)
T 3mpk_A 218 LATTRGQTELMSILNKALYSISNDE-LASIISRWRGS 253 (267)
T ss_dssp EEEETTCHHHHHHHHHHHHTSCHHH-HHHHHHTTC--
T ss_pred EEEcCCCHHHHHHHHHHHHhCCHHH-HHHHHHhhccC
Confidence 99999998 9999999999999996 99999999964
No 23
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis}
Probab=99.88 E-value=1.1e-22 Score=202.25 Aligned_cols=229 Identities=18% Similarity=0.290 Sum_probs=189.9
Q ss_pred CCCccCCCCceEEEEecCCCCCcceEEEeeCCCCCCCceEEEehHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHH
Q 037841 40 KGWEVPTNEKKLRIGVPVKKGFSYFVNVTIDPKTQEPTSVTGFCIDVFKAVIQELPYAVAYDFVPYGQPDGTSSGSYNDL 119 (561)
Q Consensus 40 ~~~~~~~~g~~LrVgv~~~~~~~pf~~~~~d~~~~~~~~~~G~~idl~~~i~~~l~f~v~~~~v~~~~~~g~~ngs~~~l 119 (561)
..|......++|+||+. ++|+||.+.+.+ ++.+ ++.|+++|+++++++++|+++ +++.. +|.++
T Consensus 12 ~~~~~i~~~~~l~v~~~--~~~pP~~~~~~~--~~~g-~~~G~~~dl~~~i~~~~g~~v--~~~~~---------~~~~~ 75 (271)
T 2iee_A 12 TGWEQIKDKGKIVVATS--GTLYPTSYHDTD--SGSD-KLTGYEVEVVREAAKRLGLKV--EFKEM---------GIDGM 75 (271)
T ss_dssp CCHHHHHHHTEEEEEEC--SCBTTTBEEETT--TTCC-EEECHHHHHHHHHHHHTTCEE--EEEEC---------CSTTH
T ss_pred chHHhhccCCeEEEEEC--CCCCCeeEeCCC--CCCC-CceeeHHHHHHHHHHHcCCeE--EEEEC---------CHHHH
Confidence 33443445688999997 689999987632 1226 899999999999999999854 44442 48899
Q ss_pred HHHHHcCcccEEEeceeeecCcceeeeccccccccceEEEEEccCCCCCCcceeccccchhhHHHHHHHHHHHHHHHhhh
Q 037841 120 IYQVFLGEFDAAVGDITILLNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWAL 199 (561)
Q Consensus 120 i~~l~~g~~D~~vg~~~it~~R~~~vdfT~p~~~~~~~ivvp~~~~~~~~~~~fl~PF~~~vW~~~~~~~i~~~~v~~~l 199 (561)
+.++.+|++|+++++++.+++|.+.++||.||.....++++++.....
T Consensus 76 ~~~l~~G~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~l~~~~~~~~~-------------------------------- 123 (271)
T 2iee_A 76 LTAVNSGQVDAAANDIDVTKDREEKFAFSTPYKYSYGTAIVRKDDLSG-------------------------------- 123 (271)
T ss_dssp HHHHHHTSSSEECSSCBCCHHHHTTEEECCCSEEEEEEEEECTTTGGG--------------------------------
T ss_pred HHHHHCCCcCEEEeCCcCChhhccceEEeecceeCCeEEEEECCCCCC--------------------------------
Confidence 999999999999988889999999999999999999999998664311
Q ss_pred hcccCCCCCCCccCccchhHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHhHhhheeeeEeeccCCCcCCHHH
Q 037841 200 EHRVNEDFRGPARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWYFVVLVLTQSYTASLTSLLTVQQLQPTITDVKM 279 (561)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~Ril~~~w~~~~lil~~~Yta~LtS~Lt~~~~~~~I~sl~d 279 (561)
|++++|
T Consensus 124 --------------------------------------------------------------------------i~~~~d 129 (271)
T 2iee_A 124 --------------------------------------------------------------------------IKTLKD 129 (271)
T ss_dssp --------------------------------------------------------------------------CSSGGG
T ss_pred --------------------------------------------------------------------------CCCHHH
Confidence 789999
Q ss_pred HHhCCCeeEEEeCchHHHHHHhcCCCccceeecCChHHH--HHHhhccccCCceeEEeecchhHHHHHh-cCC-cceEEe
Q 037841 280 LIKRGDNVGYQKGSFVLGILKQLGFDERKLVVYNSPEEC--HELFQKGSANGGIAAAFEEIPYGKLLVG-QHC-YKYTMV 355 (561)
Q Consensus 280 L~~~~~~vg~~~gs~~~~~l~~~~~~~~~~~~~~s~~~~--~~~l~~g~~~~gv~a~i~~~~~~~~~l~-~~~-~~l~~v 355 (561)
| +|++||+..|+....++++.+. +++.+.+.+++ +++|..|+ +| ++.+...+.+++. ++. .++.++
T Consensus 130 L--~g~~i~v~~g~~~~~~l~~~~~---~~~~~~~~~~~~l~~~L~~Gr----vD-~i~~~~~~~~~~~~~~~~~~~~~~ 199 (271)
T 2iee_A 130 L--KGKKAAGAATTVYMEVARKYGA---KEVIYDNATNEQYLKDVANGR----TD-VILNDYYLQTLALAAFPDLNITIH 199 (271)
T ss_dssp G--TTCEEESCTTSHHHHHHHHTTC---EEEECSSCCHHHHHHHHHHTS----SC-EEEEEHHHHHHHHHHCTTSSCEEC
T ss_pred h--CCCEEEEeCCccHHHHHHHcCC---ceEEeCChhhHHHHHHHHcCC----cc-EEeccHHHHHHHHHhCCCCceEEe
Confidence 9 6999999999999999987543 77889999988 99999999 99 6666666666555 442 357777
Q ss_pred -CcccccCceEEEecCCCC-ChhhHHHHHhhccccchhHHHHHHHcc
Q 037841 356 -EPTFKTAGFGFAFPLHSP-LVHDVSKAILSVTEGDKMKEIEDAWFK 400 (561)
Q Consensus 356 -~~~~~~~~~~~~~~k~sp-l~~~in~~Il~l~e~G~~~~i~~kw~~ 400 (561)
+..+...+++++++|++| ++..||++|.++.++|.+++|.++|+.
T Consensus 200 ~~~~~~~~~~~~~~~k~~~~l~~~ln~al~~l~~~G~~~~i~~k~~~ 246 (271)
T 2iee_A 200 PDIKYMPNKQALVMKKSNAALQKKMNEALKEMSKDGSLTKLSKQFFN 246 (271)
T ss_dssp SSCCEEEEEECCEEETTCHHHHHHHHHHHHHHHHHTHHHHHHHHHTT
T ss_pred cCCCcccceEEEEEcCCCHHHHHHHHHHHHHHHHCCCHHHHHHHhCC
Confidence 667777888999999988 999999999999999999999999996
No 24
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=99.88 E-value=8.3e-22 Score=194.39 Aligned_cols=223 Identities=19% Similarity=0.308 Sum_probs=190.7
Q ss_pred CCceEEEEecCCCCCcceEEEeeCCCCCCCceEEEehHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcC
Q 037841 47 NEKKLRIGVPVKKGFSYFVNVTIDPKTQEPTSVTGFCIDVFKAVIQELPYAVAYDFVPYGQPDGTSSGSYNDLIYQVFLG 126 (561)
Q Consensus 47 ~g~~LrVgv~~~~~~~pf~~~~~d~~~~~~~~~~G~~idl~~~i~~~l~f~v~~~~v~~~~~~g~~ngs~~~li~~l~~g 126 (561)
..++|+||+. +.|+||.+.+. ++ ++.|+++|+++++++++|++ ++++.. +|.+++.++.+|
T Consensus 27 ~~~~l~v~~~--~~~~P~~~~~~-----~g-~~~G~~~dl~~~i~~~~g~~--~~~~~~---------~~~~~~~~l~~g 87 (259)
T 4dz1_A 27 EGRTLNVAVS--PASPPMLFKSA-----DG-KLQGIDLELFSSYCQSRHCK--LNITEY---------AWDGMLGAVASG 87 (259)
T ss_dssp TTCEEEEEEC--CCBTTTBEECT-----TC-CEESHHHHHHHHHHHHHTCE--EEEEEC---------CHHHHHHHHHHT
T ss_pred cCCeEEEEEC--CCCCCeEEECC-----CC-CEEEeHHHHHHHHHHHhCCe--EEEEEc---------CHHHHHHHHhCC
Confidence 3578999997 78899998763 45 89999999999999999974 555552 599999999999
Q ss_pred cccEEEeceeeecCcceeeeccccccccceEEEEEccCCCCCCcceeccccchhhHHHHHHHHHHHHHHHhhhhcccCCC
Q 037841 127 EFDAAVGDITILLNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWALEHRVNED 206 (561)
Q Consensus 127 ~~D~~vg~~~it~~R~~~vdfT~p~~~~~~~ivvp~~~~~~~~~~~fl~PF~~~vW~~~~~~~i~~~~v~~~l~~~~~~~ 206 (561)
++|+++++++.+++|.+.++||.||+..+.+++++++....
T Consensus 88 ~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~~~--------------------------------------- 128 (259)
T 4dz1_A 88 QADVAFSGISITDKRKKVIDFSEPYYINSFYLVSMANHKIT--------------------------------------- 128 (259)
T ss_dssp SSSEEEEEEECCHHHHTTEEECCCSEEEEEEEEEETTSCCC---------------------------------------
T ss_pred CCCEEEECCcCCHHHhhccccccchhhCceEEEEEcCCCCC---------------------------------------
Confidence 99999888999999999999999999999999998665432
Q ss_pred CCCCccCccchhHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHhHhhheeeeEeeccCCCcCCHHHHHhCCCe
Q 037841 207 FRGPARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWYFVVLVLTQSYTASLTSLLTVQQLQPTITDVKMLIKRGDN 286 (561)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~Ril~~~w~~~~lil~~~Yta~LtS~Lt~~~~~~~I~sl~dL~~~~~~ 286 (561)
|++++|| +|++
T Consensus 129 -------------------------------------------------------------------i~~~~dL--~g~~ 139 (259)
T 4dz1_A 129 -------------------------------------------------------------------LNNLNEL--NKYS 139 (259)
T ss_dssp -------------------------------------------------------------------CCSGGGG--GGSC
T ss_pred -------------------------------------------------------------------CCCHHHh--CCCE
Confidence 7899999 5899
Q ss_pred eEEEeCchHHHHHHhc----CCCc-cceeecCChHHHHHHhhccccCCceeEEeecchhHHHHHhcCCcceEEeCccccc
Q 037841 287 VGYQKGSFVLGILKQL----GFDE-RKLVVYNSPEECHELFQKGSANGGIAAAFEEIPYGKLLVGQHCYKYTMVEPTFKT 361 (561)
Q Consensus 287 vg~~~gs~~~~~l~~~----~~~~-~~~~~~~s~~~~~~~l~~g~~~~gv~a~i~~~~~~~~~l~~~~~~l~~v~~~~~~ 361 (561)
||+..|+....++++. +++. .+++.+++.++++++|.+|+ +||++.+...+.+++++....+.........
T Consensus 140 v~v~~g~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~----vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (259)
T 4dz1_A 140 IGYPRGMAYSDLIKNDLEPKGYYSLSKVKLYPTYNETMADLKNGN----LDLAFIEEPVYFTFKNKKKMPIESRYVFKNV 215 (259)
T ss_dssp EEEETTSTHHHHHHHHTGGGTSCCGGGCEEESSHHHHHHHHHHTS----CSEEEEEHHHHHHHHHTSCCCEEEEEEEEEE
T ss_pred EEEeCCcHHHHHHHHhcccccccccceeEecCCHHHHHHHHHcCC----CCEEEecHHHHHHHhccCCCceEeecccCCC
Confidence 9999999998888763 2211 67889999999999999999 9999999998888877664446666666667
Q ss_pred CceEEEecCCCCChhhHHHHHhhccccchhHHHHHHHccc
Q 037841 362 AGFGFAFPLHSPLVHDVSKAILSVTEGDKMKEIEDAWFKK 401 (561)
Q Consensus 362 ~~~~~~~~k~spl~~~in~~Il~l~e~G~~~~i~~kw~~~ 401 (561)
.+++++++|+++|++.||++|.+ ..++.++++.++|...
T Consensus 216 ~~~~~~~~k~~~l~~~ln~~l~~-~g~~~l~~~~~~~~~~ 254 (259)
T 4dz1_A 216 DQLGIAFKKGSPVRDDFNLWLKE-QGPQKISGIVDSWMKH 254 (259)
T ss_dssp EEEEEEEETTCHHHHHHHHHHHH-HCHHHHHHHHHHHTCC
T ss_pred ceEEEEEeCChHHHHHHHHHHHh-CCCeehHHHHHHHHhh
Confidence 88999999999999999999999 8888999999999953
No 25
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=99.88 E-value=1.1e-21 Score=188.58 Aligned_cols=218 Identities=20% Similarity=0.372 Sum_probs=188.9
Q ss_pred CCceEEEEecCCCCCcceEEEeeCCCCCCCceEEEehHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcC
Q 037841 47 NEKKLRIGVPVKKGFSYFVNVTIDPKTQEPTSVTGFCIDVFKAVIQELPYAVAYDFVPYGQPDGTSSGSYNDLIYQVFLG 126 (561)
Q Consensus 47 ~g~~LrVgv~~~~~~~pf~~~~~d~~~~~~~~~~G~~idl~~~i~~~l~f~v~~~~v~~~~~~g~~ngs~~~li~~l~~g 126 (561)
+.++|+||+. ++|+||.+.+. ++ ++.|+++|+++++++++|+++ +++.. +|.+++.++.+|
T Consensus 4 ~a~~l~v~~~--~~~~P~~~~~~-----~g-~~~G~~~dl~~~i~~~~g~~~--~~~~~---------~~~~~~~~l~~g 64 (229)
T 2y7i_A 4 SARTLHFGTS--ATYAPYEFVDA-----DN-KIVGFDIDVANAVCKEMQAEC--SFTNQ---------SFDSLIPSLRFK 64 (229)
T ss_dssp SCCEEEEEEC--CCBTTTBEECT-----TS-CEESHHHHHHHHHHHHTTCEE--EEEEC---------CGGGHHHHHHTT
T ss_pred cCCcEEEEeC--CCcCCceEECC-----CC-CCcceeHHHHHHHHHHhCCeE--EEEEc---------CHHHHHHHHhCC
Confidence 4678999996 78899988753 45 899999999999999999854 44442 589999999999
Q ss_pred cccEEEeceeeecCcceeeecccccccc-ceEEEEEccCCCCCCcceeccccchhhHHHHHHHHHHHHHHHhhhhcccCC
Q 037841 127 EFDAAVGDITILLNRSNYVDFTLPYTES-GVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWALEHRVNE 205 (561)
Q Consensus 127 ~~D~~vg~~~it~~R~~~vdfT~p~~~~-~~~ivvp~~~~~~~~~~~fl~PF~~~vW~~~~~~~i~~~~v~~~l~~~~~~ 205 (561)
++|++++++..+++|.+.+.|+.||... ..++++++..
T Consensus 65 ~~D~~~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~----------------------------------------- 103 (229)
T 2y7i_A 65 KFDAVIAGMDMTPKREQQVSFSQPYYEGLSAVVVTRKGA----------------------------------------- 103 (229)
T ss_dssp SCSEECSSCBCCHHHHTTSEECSCSBCCCCEEEEEETTS-----------------------------------------
T ss_pred CceEEEecCccCHHHhcceeeccccccCCcEEEEEeCCC-----------------------------------------
Confidence 9999987788999999999999999999 9999998553
Q ss_pred CCCCCccCccchhHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHhHhhheeeeEeeccCCCcCCHHHHHhCCC
Q 037841 206 DFRGPARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWYFVVLVLTQSYTASLTSLLTVQQLQPTITDVKMLIKRGD 285 (561)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~Ril~~~w~~~~lil~~~Yta~LtS~Lt~~~~~~~I~sl~dL~~~~~ 285 (561)
+++++|| +|+
T Consensus 104 --------------------------------------------------------------------~~~~~dL--~g~ 113 (229)
T 2y7i_A 104 --------------------------------------------------------------------YHTFADL--KGK 113 (229)
T ss_dssp --------------------------------------------------------------------CCSTGGG--TTC
T ss_pred --------------------------------------------------------------------CCCHHHH--CCC
Confidence 3778999 699
Q ss_pred eeEEEeCchHHHHHHhcCCCccceeecCChHHHHHHhhccccCCceeEEeecchhHHHHHhcCCcceEEeCcccc-----
Q 037841 286 NVGYQKGSFVLGILKQLGFDERKLVVYNSPEECHELFQKGSANGGIAAAFEEIPYGKLLVGQHCYKYTMVEPTFK----- 360 (561)
Q Consensus 286 ~vg~~~gs~~~~~l~~~~~~~~~~~~~~s~~~~~~~l~~g~~~~gv~a~i~~~~~~~~~l~~~~~~l~~v~~~~~----- 360 (561)
+||+..|+....++++. .+..+++.+.+.++++++|.+|+ +|+++.+...+.++++++. ++.+++..+.
T Consensus 114 ~v~~~~g~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~gr----vDa~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 187 (229)
T 2y7i_A 114 KVGLENGTTHQRYLQDK-QQAITPVAYDSYLNAFTDLKNNR----LEGVFGDVAAIGKWLKNNP-DYAIMDERASDPDYY 187 (229)
T ss_dssp EEEEETTSHHHHHHHHH-CTTSEEEEESCHHHHHHHHHTTS----CSEEEEEHHHHHHHHTTCT-TEEECSCCBCCTTTS
T ss_pred EEEEecCCcHHHHHHHh-CCCCeEEecCCHHHHHHHHHcCC----cCEEEechHHHHHHHHhCC-CeEEecccccccccc
Confidence 99999999999988874 34567888999999999999999 9999999999999998877 5888776543
Q ss_pred cCceEEEecCCCC-ChhhHHHHHhhccccchhHHHHHHHcc
Q 037841 361 TAGFGFAFPLHSP-LVHDVSKAILSVTEGDKMKEIEDAWFK 400 (561)
Q Consensus 361 ~~~~~~~~~k~sp-l~~~in~~Il~l~e~G~~~~i~~kw~~ 400 (561)
..+++++++|++| ++..+|++|.++.++|.+++|.++|++
T Consensus 188 ~~~~~~~~~~~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~ 228 (229)
T 2y7i_A 188 GKGLGIAVRKDNDALLQEINAALDKVKASPEYAQMQEKWFT 228 (229)
T ss_dssp CCCBCCEECTTCHHHHHHHHHHHHHHHTSHHHHHHHHHHHC
T ss_pred ccceEEEEeCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcC
Confidence 2478999999988 999999999999999999999999985
No 26
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=99.87 E-value=8.6e-22 Score=191.44 Aligned_cols=221 Identities=12% Similarity=0.167 Sum_probs=186.5
Q ss_pred CceEEEEecCCCCCcceEEEeeCCCCCCCceEEEehHHHHHHHHHHCC-CceeEEEEecCCCCCCCCCCHHHHHHHHHcC
Q 037841 48 EKKLRIGVPVKKGFSYFVNVTIDPKTQEPTSVTGFCIDVFKAVIQELP-YAVAYDFVPYGQPDGTSSGSYNDLIYQVFLG 126 (561)
Q Consensus 48 g~~LrVgv~~~~~~~pf~~~~~d~~~~~~~~~~G~~idl~~~i~~~l~-f~v~~~~v~~~~~~g~~ngs~~~li~~l~~g 126 (561)
.++|+||+. .+|+||.+ +. ++ ++.|+++|+++++++++| ++ ++++.. +|.+++.++.+|
T Consensus 7 ~~~l~v~~~--~~~~P~~~-~~-----~g-~~~G~~~dl~~~i~~~~g~~~--~~~~~~---------~~~~~~~~l~~g 66 (246)
T 4eq9_A 7 KKEIIVATN--GSPRPFIY-EE-----NG-ELTGYEIEVVRAIFKDSDKYD--VKFEKT---------EWSGVFAGLDAD 66 (246)
T ss_dssp CEEEEEEEC--CCSTTTSE-EE-----TT-EEESHHHHHHHHHHTTCSSEE--EEEEEC---------CHHHHHHHHHTT
T ss_pred CCEEEEEeC--CCcCCeEE-cC-----CC-CCcccHHHHHHHHHHHcCCce--EEEEeC---------CHHHHHHHHhCC
Confidence 578999997 68899988 33 34 899999999999999999 74 555552 599999999999
Q ss_pred cccEEEeceeeecCcceeeeccccccccceEEEEEccCCCCCCcceeccccchhhHHHHHHHHHHHHHHHhhhhcccCCC
Q 037841 127 EFDAAVGDITILLNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWALEHRVNED 206 (561)
Q Consensus 127 ~~D~~vg~~~it~~R~~~vdfT~p~~~~~~~ivvp~~~~~~~~~~~fl~PF~~~vW~~~~~~~i~~~~v~~~l~~~~~~~ 206 (561)
++|++++++..+++|.+.++||.||.....++++++.+..
T Consensus 67 ~~D~~~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~~---------------------------------------- 106 (246)
T 4eq9_A 67 RYNMAVNNLSYTKERAEKYLYAAPIAQNPNVLVVKKDDSS---------------------------------------- 106 (246)
T ss_dssp SCSEECSSCCCCHHHHHHEEECCCCEECCEEEEEETTCCS----------------------------------------
T ss_pred CcCEEecccccChhhhhceeeccceecCceEEEEECCCCC----------------------------------------
Confidence 9999998899999999999999999999999999963322
Q ss_pred CCCCccCccchhHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHhHhhheeeeEeeccCCCcCCHHHHHhCCCe
Q 037841 207 FRGPARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWYFVVLVLTQSYTASLTSLLTVQQLQPTITDVKMLIKRGDN 286 (561)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~Ril~~~w~~~~lil~~~Yta~LtS~Lt~~~~~~~I~sl~dL~~~~~~ 286 (561)
+++++|| .|++
T Consensus 107 -------------------------------------------------------------------i~~~~dL--~g~~ 117 (246)
T 4eq9_A 107 -------------------------------------------------------------------IKSLDDI--GGKS 117 (246)
T ss_dssp -------------------------------------------------------------------CSSGGGC--TTCE
T ss_pred -------------------------------------------------------------------CCCHHHh--CCCE
Confidence 7899999 6999
Q ss_pred eEEEeCchHHHHHHhc--CCCc--ccee-ecCChHHHHHHhhccccCCceeEEeecchhHHHHHhcCC-cceEEeCcccc
Q 037841 287 VGYQKGSFVLGILKQL--GFDE--RKLV-VYNSPEECHELFQKGSANGGIAAAFEEIPYGKLLVGQHC-YKYTMVEPTFK 360 (561)
Q Consensus 287 vg~~~gs~~~~~l~~~--~~~~--~~~~-~~~s~~~~~~~l~~g~~~~gv~a~i~~~~~~~~~l~~~~-~~l~~v~~~~~ 360 (561)
||+..|+....++.+. ..+. .++. ...+.++++++|..|+ +|+++.+...+.+++++.. ..+.++.....
T Consensus 118 i~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~g~----vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (246)
T 4eq9_A 118 TEVVQATTSAKQLEAYNAEHTDNPTILNYTKADFQQIMVRLSDGQ----FDYKIFDKIGVETVIKNQGLDNLKVIELPSD 193 (246)
T ss_dssp EEECTTCHHHHHHHHHHHHCTTSCCEEEECCCCHHHHHHHHHTTS----SSEEEEEHHHHHHHHHHHTCTTEEEEECCCS
T ss_pred EEEecCccHHHHHHHHHhhCCCcceEEEecCCCHHHHHHHHHcCC----ceEEEecHHHHHHHHHhCCCCCceEecCcCC
Confidence 9999999988888761 1232 2333 2258899999999999 9999999999999988764 34777776666
Q ss_pred cCc-eEEEecCCCC-ChhhHHHHHhhccccchhHHHHHHHccc
Q 037841 361 TAG-FGFAFPLHSP-LVHDVSKAILSVTEGDKMKEIEDAWFKK 401 (561)
Q Consensus 361 ~~~-~~~~~~k~sp-l~~~in~~Il~l~e~G~~~~i~~kw~~~ 401 (561)
..+ ++++++|++| +++.||++|.++.++|.+++|.++|++.
T Consensus 194 ~~~~~~~~~~k~~~~l~~~ln~~l~~l~~~g~~~~i~~k~~~~ 236 (246)
T 4eq9_A 194 QQPYVYPLLAQGQDELKSFVDKRIKELYKDGTLEKLSKQFFGD 236 (246)
T ss_dssp SCCEECCEEETTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHSS
T ss_pred CCCcEEEEEcCCCHHHHHHHHHHHHHHHhCCcHHHHHHHhcCC
Confidence 555 8899999998 9999999999999999999999999964
No 27
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=99.87 E-value=1.2e-21 Score=189.88 Aligned_cols=222 Identities=17% Similarity=0.272 Sum_probs=185.4
Q ss_pred CceEEEEecCCCCCcceEEEeeCCCCCCCceEEEehHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCc
Q 037841 48 EKKLRIGVPVKKGFSYFVNVTIDPKTQEPTSVTGFCIDVFKAVIQELPYAVAYDFVPYGQPDGTSSGSYNDLIYQVFLGE 127 (561)
Q Consensus 48 g~~LrVgv~~~~~~~pf~~~~~d~~~~~~~~~~G~~idl~~~i~~~l~f~v~~~~v~~~~~~g~~ngs~~~li~~l~~g~ 127 (561)
.++|+||+. ++|+||.+.+. ++ ++.|+++|+++++++++|+++ +++. .+|.+++.++.+|+
T Consensus 3 ~~~l~v~~~--~~~~P~~~~~~-----~g-~~~G~~~dl~~~i~~~~g~~~--~~~~---------~~~~~~~~~l~~g~ 63 (239)
T 1lst_A 3 PQTVRIGTD--TTYAPFSSKDA-----KG-EFIGFDIDLGNEMCKRMQVKC--TWVA---------SDFDALIPSLKAKK 63 (239)
T ss_dssp CSEEEEEEC--SCBTTTBEECT-----TC-CEESHHHHHHHHHHHHHTCEE--EEEE---------CCGGGHHHHHHTTS
T ss_pred cceEEEEEC--CCcCCeeEECC-----CC-CEeeEHHHHHHHHHHHHCCeE--EEEe---------CCHHHHHHHHhCCC
Confidence 478999995 68899998763 45 899999999999999999854 4444 25999999999999
Q ss_pred ccEEEeceeeecCcceeeeccccccccceEEEEEccCCCCCCcceeccccchhhHHHHHHHHHHHHHHHhhhhcccCCCC
Q 037841 128 FDAAVGDITILLNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWALEHRVNEDF 207 (561)
Q Consensus 128 ~D~~vg~~~it~~R~~~vdfT~p~~~~~~~ivvp~~~~~~~~~~~fl~PF~~~vW~~~~~~~i~~~~v~~~l~~~~~~~~ 207 (561)
+|+++++++.+++|.+.++||.||.....++++++....
T Consensus 64 ~D~~~~~~~~t~~r~~~~~~s~p~~~~~~~l~~~~~~~~----------------------------------------- 102 (239)
T 1lst_A 64 IDAIISSLSITDKRQQEIAFSDKLYAADSRLIAAKGSPI----------------------------------------- 102 (239)
T ss_dssp CSEECSSCBCCHHHHHHCEECSCSBCCCEEEEEETTCCC-----------------------------------------
T ss_pred CCEEEECcCcCHHHhhceeecccceeCceEEEEeCCCCC-----------------------------------------
Confidence 999998889999999999999999999999999966432
Q ss_pred CCCccCccchhHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHhHhhheeeeEeeccCCCcCCHHHHHhCCCee
Q 037841 208 RGPARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWYFVVLVLTQSYTASLTSLLTVQQLQPTITDVKMLIKRGDNV 287 (561)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~Ril~~~w~~~~lil~~~Yta~LtS~Lt~~~~~~~I~sl~dL~~~~~~v 287 (561)
..+++|| .|++|
T Consensus 103 ------------------------------------------------------------------~~~~~dL--~g~~v 114 (239)
T 1lst_A 103 ------------------------------------------------------------------QPTLESL--KGKHV 114 (239)
T ss_dssp ------------------------------------------------------------------CSSHHHH--TTCEE
T ss_pred ------------------------------------------------------------------CCCHHHh--CCCEE
Confidence 2489999 69999
Q ss_pred EEEeCchHHHHHHhcC-CCccceeecCChHHHHHHhhccccCCceeEEeecchhHHH-HHhcC-CcceEEeCccccc---
Q 037841 288 GYQKGSFVLGILKQLG-FDERKLVVYNSPEECHELFQKGSANGGIAAAFEEIPYGKL-LVGQH-CYKYTMVEPTFKT--- 361 (561)
Q Consensus 288 g~~~gs~~~~~l~~~~-~~~~~~~~~~s~~~~~~~l~~g~~~~gv~a~i~~~~~~~~-~l~~~-~~~l~~v~~~~~~--- 361 (561)
|+..|+....++++.. .+..+++.+++.++++++|..|+ +|+++.+...+.+ ++.+. ..++.+++..+..
T Consensus 115 ~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~G~----vDa~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 190 (239)
T 1lst_A 115 GVLQGSTQEAYANDNWRTKGVDVVAYANQDLIYSDLTAGR----LDAALQDEVAASEGFLKQPAGKEYAFAGPSVKDKKY 190 (239)
T ss_dssp EEETTSHHHHHHHHHTGGGTCEEEEESSHHHHHHHHHTTS----CSEEEEEHHHHHHHTTTSGGGTTEEECSSCBCCHHH
T ss_pred EEEcCccHHHHHHHhcccCCCeEEEcCCHHHHHHHHHcCC----CCEEEeCcHHHHHHHHhccCCCceEEeccccccccc
Confidence 9999999888887642 13457788999999999999999 9999999888754 45543 2347777655543
Q ss_pred --CceEEEecCCCC-ChhhHHHHHhhccccchhHHHHHHHccc
Q 037841 362 --AGFGFAFPLHSP-LVHDVSKAILSVTEGDKMKEIEDAWFKK 401 (561)
Q Consensus 362 --~~~~~~~~k~sp-l~~~in~~Il~l~e~G~~~~i~~kw~~~ 401 (561)
.+++++++|+++ +.+.+|++|.++.++|.+++|.++|++.
T Consensus 191 ~~~~~~~~~~k~~~~l~~~~~~~l~~l~~~G~~~~i~~k~~~~ 233 (239)
T 1lst_A 191 FGDGTGVGLRKDDTELKAAFDKALTELRQDGTYDKMAKKYFDF 233 (239)
T ss_dssp HCSSBCCEECTTCHHHHHHHHHHHHHHHHTTHHHHHHHTTCSS
T ss_pred cCcceEEEEeCCCHHHHHHHHHHHHHHHHCccHHHHHHHHcCC
Confidence 368999999998 9999999999999999999999999964
No 28
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A*
Probab=99.86 E-value=2.5e-21 Score=190.00 Aligned_cols=223 Identities=16% Similarity=0.165 Sum_probs=188.2
Q ss_pred CceEEEEecCCCCCcceEEEeeCCCCCCCceEEEehHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCc
Q 037841 48 EKKLRIGVPVKKGFSYFVNVTIDPKTQEPTSVTGFCIDVFKAVIQELPYAVAYDFVPYGQPDGTSSGSYNDLIYQVFLGE 127 (561)
Q Consensus 48 g~~LrVgv~~~~~~~pf~~~~~d~~~~~~~~~~G~~idl~~~i~~~l~f~v~~~~v~~~~~~g~~ngs~~~li~~l~~g~ 127 (561)
.++|+||+. +|+||.+.+. ++ ++.|+++|+++++++++|++ .++++.. +|.+++.++.+|+
T Consensus 12 ~~~l~v~~~---~~~P~~~~~~-----~g-~~~G~~~dl~~~i~~~~g~~-~~~~~~~---------~~~~~~~~l~~g~ 72 (257)
T 2q88_A 12 QGFARIAIA---NEPPFTAVGA-----DG-KVSGAAPDVAREIFKRLGVA-DVVASIS---------EYGAMIPGLQAGR 72 (257)
T ss_dssp HTEEEEEEC---CCTTTCEECT-----TC-CEESHHHHHHHHHHHHTTCC-EEEEEEC---------CGGGHHHHHHTTS
T ss_pred CCeEEEEcC---CCCCeeEECC-----CC-CcccccHHHHHHHHHHcCCC-eeeEEeC---------CHHHHHHHHHCCC
Confidence 578999995 6888888653 45 89999999999999999986 1444442 5899999999999
Q ss_pred ccEEEeceeeecCcceeeeccccccccceEEEEEccCCCCCCcceeccccchhhHHHHHHHHHHHHHHHhhhhcccCCCC
Q 037841 128 FDAAVGDITILLNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWALEHRVNEDF 207 (561)
Q Consensus 128 ~D~~vg~~~it~~R~~~vdfT~p~~~~~~~ivvp~~~~~~~~~~~fl~PF~~~vW~~~~~~~i~~~~v~~~l~~~~~~~~ 207 (561)
+|++++++..+++|.+.++|+.||.....++++++.....
T Consensus 73 ~D~~~~~~~~t~~r~~~~~~s~p~~~~~~~~~~~~~~~~~---------------------------------------- 112 (257)
T 2q88_A 73 HDAITAGLFMKPERCAAVAYSQPILCDAEAFALKKGNPLG---------------------------------------- 112 (257)
T ss_dssp CSEECSCCBCCHHHHTTSEECSCCCEECEEEEEETTCTTC----------------------------------------
T ss_pred cCEEEecccCCHHHHhccccccchhcCceEEEEECCCccC----------------------------------------
Confidence 9999877899999999999999999999999999665322
Q ss_pred CCCccCccchhHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHhHhhheeeeEeeccCCCcCCHHHHHhC-CCe
Q 037841 208 RGPARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWYFVVLVLTQSYTASLTSLLTVQQLQPTITDVKMLIKR-GDN 286 (561)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~Ril~~~w~~~~lil~~~Yta~LtS~Lt~~~~~~~I~sl~dL~~~-~~~ 286 (561)
+++++||..+ |++
T Consensus 113 ------------------------------------------------------------------i~~~~dL~~~~g~~ 126 (257)
T 2q88_A 113 ------------------------------------------------------------------LKSYKDIADNPDAK 126 (257)
T ss_dssp ------------------------------------------------------------------CCBHHHHHHCTTCC
T ss_pred ------------------------------------------------------------------CCCHHHHhccCCce
Confidence 7899999543 889
Q ss_pred eEEEeCchHHHHHHhcCCCccceeecCChHHHHHHhhccccCCceeEEeecchhHHHHHhcCC-cceEEeCcccc--cCc
Q 037841 287 VGYQKGSFVLGILKQLGFDERKLVVYNSPEECHELFQKGSANGGIAAAFEEIPYGKLLVGQHC-YKYTMVEPTFK--TAG 363 (561)
Q Consensus 287 vg~~~gs~~~~~l~~~~~~~~~~~~~~s~~~~~~~l~~g~~~~gv~a~i~~~~~~~~~l~~~~-~~l~~v~~~~~--~~~ 363 (561)
||+..|+....++++.+++..+++.+++.++++++|..|+ +|+++.+...+.++++++. ..+..+.+... ..+
T Consensus 127 i~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~gr----vDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (257)
T 2q88_A 127 IGAPGGGTEEKLALEAGVPRDRVIVVPDGQSGLKMLQDGR----IDVYSLPVLSINDLVSKANDPNVEVLAPVEGAPVYC 202 (257)
T ss_dssp EEECTTSHHHHHHHHTTCCGGGEEECSSHHHHHHHHHHTS----CSEEEEEHHHHHHHHHHHCCTTEEEECSCBTCCCEE
T ss_pred EEEECCcccHHHHHhcCCCCceEEEcCCHHHHHHHHHcCC----CcEEEcCHHHHHHHHHhCCCcceeeecccCCccccc
Confidence 9999999999999887777778899999999999999999 9999999999999888764 34555443211 245
Q ss_pred eEEEecCCCC-ChhhHHHHHhhccccchhHHHHHHHc
Q 037841 364 FGFAFPLHSP-LVHDVSKAILSVTEGDKMKEIEDAWF 399 (561)
Q Consensus 364 ~~~~~~k~sp-l~~~in~~Il~l~e~G~~~~i~~kw~ 399 (561)
++++++|+++ +.+.||++|.++.++|.+++|.++|.
T Consensus 203 ~~~~~~k~~~~l~~~l~~~l~~~~~~g~~~~i~~k~~ 239 (257)
T 2q88_A 203 DGAAFRKGDEALRDAFDVELAKLKESGEFAKIIEPYG 239 (257)
T ss_dssp BCCEECGGGHHHHHHHHHHHHHHHHHTHHHHHHGGGT
T ss_pred eEEEEcCCCHHHHHHHHHHHHHHHhCCcHHHHHHHhC
Confidence 6789999976 99999999999999999999999994
No 29
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=99.86 E-value=2.9e-21 Score=185.07 Aligned_cols=221 Identities=21% Similarity=0.350 Sum_probs=183.4
Q ss_pred CceEEEEecCCCCCcceEEEeeCCCCCCCceEEEehHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCc
Q 037841 48 EKKLRIGVPVKKGFSYFVNVTIDPKTQEPTSVTGFCIDVFKAVIQELPYAVAYDFVPYGQPDGTSSGSYNDLIYQVFLGE 127 (561)
Q Consensus 48 g~~LrVgv~~~~~~~pf~~~~~d~~~~~~~~~~G~~idl~~~i~~~l~f~v~~~~v~~~~~~g~~ngs~~~li~~l~~g~ 127 (561)
.++|+||+. +|+||.+. . ++ ++.|+++|+++.+++++|+++++ +... +|.+++.++.+|+
T Consensus 2 ~~~l~v~~~---~~~P~~~~-~-----~g-~~~G~~~dl~~~~~~~~g~~~~~--~~~~--------~~~~~~~~l~~g~ 61 (228)
T 2pyy_A 2 QQPLLVATR---VIPPFVLS-N-----KG-ELSGFSIDLWRSIATQIGIESKL--IEYS--------SVPELISAIKDNK 61 (228)
T ss_dssp --CEEEEEC---CBTTTBBC-C---------CBSHHHHHHHHHHHHHTCCEEE--EECS--------SHHHHHHHHHTTS
T ss_pred CceEEEEec---CCCCeEEe-c-----CC-ceEEEeHHHHHHHHHHhCCcEEE--EEcC--------CHHHHHHHHHCCC
Confidence 367999997 47888775 2 34 78999999999999999985554 4432 6899999999999
Q ss_pred ccEEEeceeeecCcceeeeccccccccceEEEEEccCCCCCCcceeccccchhhHHHHHHHHHHHHHHHhhhhcccCCCC
Q 037841 128 FDAAVGDITILLNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWALEHRVNEDF 207 (561)
Q Consensus 128 ~D~~vg~~~it~~R~~~vdfT~p~~~~~~~ivvp~~~~~~~~~~~fl~PF~~~vW~~~~~~~i~~~~v~~~l~~~~~~~~ 207 (561)
+|++++++..+++|.+.+.|+.||.....++++++..+..
T Consensus 62 ~D~~~~~~~~~~~r~~~~~~~~p~~~~~~~~~~~~~~~~~---------------------------------------- 101 (228)
T 2pyy_A 62 VNLGIAAISITAEREQNFDFSLPIFASGLQIMVRNLESGT---------------------------------------- 101 (228)
T ss_dssp CSEECSSCBCCHHHHHHSEECSCSEEEEEEEEEEC---------------------------------------------
T ss_pred cCEEEeccccCHHHHccceecccchhcceEEEEECCcccc----------------------------------------
Confidence 9999888888999999999999999999999998664210
Q ss_pred CCCccCccchhHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHhHhhheeeeEeeccCCCcCCHHHHHhCCCee
Q 037841 208 RGPARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWYFVVLVLTQSYTASLTSLLTVQQLQPTITDVKMLIKRGDNV 287 (561)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~Ril~~~w~~~~lil~~~Yta~LtS~Lt~~~~~~~I~sl~dL~~~~~~v 287 (561)
..+++++|| .|++|
T Consensus 102 ----------------------------------------------------------------~~~~~~~dL--~g~~i 115 (228)
T 2pyy_A 102 ----------------------------------------------------------------GDIRSIDDL--PGKVV 115 (228)
T ss_dssp ----------------------------------------------------------------CCCCSGGGC--TTCEE
T ss_pred ----------------------------------------------------------------CCcCCHHHc--CCCeE
Confidence 127899999 69999
Q ss_pred EEEeCchHHHHHHhcCCCccceeecCChHHHHHHhhccccCCceeEEeecchhHHHHHhcCC-cceEEeCcccccCceEE
Q 037841 288 GYQKGSFVLGILKQLGFDERKLVVYNSPEECHELFQKGSANGGIAAAFEEIPYGKLLVGQHC-YKYTMVEPTFKTAGFGF 366 (561)
Q Consensus 288 g~~~gs~~~~~l~~~~~~~~~~~~~~s~~~~~~~l~~g~~~~gv~a~i~~~~~~~~~l~~~~-~~l~~v~~~~~~~~~~~ 366 (561)
|+..|+....++++.+. +++.+.+.++++++|..|+ +|+++.+...+.+++.+.. ..+.+++..+....+++
T Consensus 116 ~~~~g~~~~~~l~~~~~---~~~~~~~~~~~~~~l~~g~----~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
T 2pyy_A 116 ATTAGSTAATYLREHHI---SVLEVPKIEEAYKALQTKK----ADAVVFDAPVLLFYAANEGKGKVEIVGSILREESYGI 188 (228)
T ss_dssp EEETTSHHHHHHHHTTC---EEEEESSHHHHHHHHHTTS----SSEEEEEHHHHHHHHHTTTTTTEEEEEEEEEEEEECC
T ss_pred EEEcCcHHHHHHHHcCC---ceEecCCHHHHHHHHHcCC----CCEEEecHHHHHHHHHhCCCCcEEEecccccceeEEE
Confidence 99999999999987443 6788899999999999999 9999999999988887763 24777776677778899
Q ss_pred EecCCCCChhhHHHHHhhccccchhHHHHHHHccc
Q 037841 367 AFPLHSPLVHDVSKAILSVTEGDKMKEIEDAWFKK 401 (561)
Q Consensus 367 ~~~k~spl~~~in~~Il~l~e~G~~~~i~~kw~~~ 401 (561)
+++|++++...++++|.++.++|.+++|.++|+..
T Consensus 189 ~~~~~~~l~~~~~~~l~~l~~~g~~~~i~~k~~~~ 223 (228)
T 2pyy_A 189 ILPNNSPYRKPINQALLNLKENGTYQSLYDKWFDP 223 (228)
T ss_dssp EECTTCTTHHHHHHHHHHHHHTTHHHHHHHHHHCC
T ss_pred EEeCChHHHHHHHHHHHHHHhCCcHHHHHHHHcCC
Confidence 99999999999999999999999999999999964
No 30
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=99.85 E-value=1.7e-20 Score=186.25 Aligned_cols=241 Identities=21% Similarity=0.329 Sum_probs=189.4
Q ss_pred ccceecCCCCCCC---CCCCccCCCCceEEEEecCCCCCcceEEEeeCCCCCCCceEEEehHHHHHHHHHHCCCceeEEE
Q 037841 26 LKPIIWPGDSTSD---PKGWEVPTNEKKLRIGVPVKKGFSYFVNVTIDPKTQEPTSVTGFCIDVFKAVIQELPYAVAYDF 102 (561)
Q Consensus 26 ~~~~~wpg~~~~~---p~~~~~~~~g~~LrVgv~~~~~~~pf~~~~~d~~~~~~~~~~G~~idl~~~i~~~l~f~v~~~~ 102 (561)
+..+.|-++.... +..-......++|+||+. ++|+||.+.+ ++ ++.|+++|+++++++++|++++ +
T Consensus 16 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~v~~~--~~~~P~~~~~------~g-~~~G~~~dl~~~i~~~~g~~v~--~ 84 (272)
T 2pvu_A 16 PRGSHMGGGRSTETSSSSGGDGGATKKKVVVGTD--AAFAPFEYMQ------KG-KIVGFDVDLLDAVMKAAGLDYE--L 84 (272)
T ss_dssp ----------------------CCCCCCEEEEEC--CCBTTTBEEE------TT-EEESHHHHHHHHHHHHHTCCEE--E
T ss_pred cccceecCCCCCccccCccccccccCCeEEEEEC--CCCCCeEEec------CC-eEEEEHHHHHHHHHHHhCCceE--E
Confidence 4456676653221 111112234678999997 6889998863 24 8999999999999999998554 4
Q ss_pred EecCCCCCCCCCCHHHHHHHHHcCcccEEEeceeeecCcceeeeccccccccceEEEEEccCCCCCCcceeccccchhhH
Q 037841 103 VPYGQPDGTSSGSYNDLIYQVFLGEFDAAVGDITILLNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLW 182 (561)
Q Consensus 103 v~~~~~~g~~ngs~~~li~~l~~g~~D~~vg~~~it~~R~~~vdfT~p~~~~~~~ivvp~~~~~~~~~~~fl~PF~~~vW 182 (561)
+.. +|.+++.++.+|++|++++++..+++|.+.+.|+.||.....++++++...
T Consensus 85 ~~~---------~~~~~~~~l~~G~~D~~~~~~~~~~~r~~~~~~s~p~~~~~~~l~~~~~~~----------------- 138 (272)
T 2pvu_A 85 KNI---------GWDPLFASLQSKEVDMGISGITITDERKQSYDFSDPYFEATQVILVKQGSP----------------- 138 (272)
T ss_dssp EEC---------CHHHHHHHHHHTSSSEECSSCBCCHHHHTTEEECSCCEEECEEEEEETTCC-----------------
T ss_pred EEC---------CHHHHHHHHhCCCCCEEEeCCcCCHHHHhcCccchhhhccceEEEEECCCC-----------------
Confidence 442 599999999999999998878889999999999999999999999986542
Q ss_pred HHHHHHHHHHHHHHhhhhcccCCCCCCCccCccchhHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHhHhhhe
Q 037841 183 VTSGCFFIFIGFVVWALEHRVNEDFRGPARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWYFVVLVLTQSYTASLT 262 (561)
Q Consensus 183 ~~~~~~~i~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~Ril~~~w~~~~lil~~~Yta~Lt 262 (561)
T Consensus 139 -------------------------------------------------------------------------------- 138 (272)
T 2pvu_A 139 -------------------------------------------------------------------------------- 138 (272)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeEeeccCCCcCCHHHHHhCCCeeEEEeCchHHHHHHhc-CCCccceeecCChHHHHHHhhccccCCceeEEeecchhH
Q 037841 263 SLLTVQQLQPTITDVKMLIKRGDNVGYQKGSFVLGILKQL-GFDERKLVVYNSPEECHELFQKGSANGGIAAAFEEIPYG 341 (561)
Q Consensus 263 S~Lt~~~~~~~I~sl~dL~~~~~~vg~~~gs~~~~~l~~~-~~~~~~~~~~~s~~~~~~~l~~g~~~~gv~a~i~~~~~~ 341 (561)
+++++|| .|++||+..|+....++++. + ...+++.+.+.++++++|..|+ +|+++.+...+
T Consensus 139 -----------i~~~~dL--~g~~i~~~~g~~~~~~l~~~~~-~~~~i~~~~~~~~~~~~l~~G~----vDa~~~~~~~~ 200 (272)
T 2pvu_A 139 -----------VKNALDL--KGKTIGVQNATTGQEAAEKLFG-KGPHIKKFETTVVAIMELLNGG----VDAVITDNAVA 200 (272)
T ss_dssp -----------CCSGGGG--TTSCEEEETTSHHHHHHHHHHC-SSTTEEEESSHHHHHHHHHTTS----CSEEEEEHHHH
T ss_pred -----------CCCHHHh--CCCeEEEEcCchHHHHHHHhcC-CCCeEEEcCCHHHHHHHHHcCC----ccEEEeCHHHH
Confidence 6889999 68999999999998888764 4 4567888999999999999999 99999999999
Q ss_pred HHHHhcCCc-ceEEeCccc--ccCceEEEecCCCCChhhHHHHHhhccccchhHHHHHHHccc
Q 037841 342 KLLVGQHCY-KYTMVEPTF--KTAGFGFAFPLHSPLVHDVSKAILSVTEGDKMKEIEDAWFKK 401 (561)
Q Consensus 342 ~~~l~~~~~-~l~~v~~~~--~~~~~~~~~~k~spl~~~in~~Il~l~e~G~~~~i~~kw~~~ 401 (561)
.+++++... ++.+++... ....++++++|+..+.+.++++|.++.++|.++++.++|+..
T Consensus 201 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~~ 263 (272)
T 2pvu_A 201 NEYVKNNPNKKLQVIEDPKNFASEYYGMIFPKNSELKAKVDEALKNVINSGKYTEIYKKWFGK 263 (272)
T ss_dssp HHHHHHCGGGCEEEECCTTTSCCEEECCEEETTCTTHHHHHHHHHHHHHTTHHHHHHHHHHSS
T ss_pred HHHHHhCCCCceEEeccccccCCceEEEEEeCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCC
Confidence 988887643 377777653 566789999999449999999999999999999999999964
No 31
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=99.85 E-value=9.5e-21 Score=186.62 Aligned_cols=224 Identities=24% Similarity=0.337 Sum_probs=189.8
Q ss_pred CceEEEEecCCCCCcceEEEeeCCCCCCCceEEEehHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCc
Q 037841 48 EKKLRIGVPVKKGFSYFVNVTIDPKTQEPTSVTGFCIDVFKAVIQELPYAVAYDFVPYGQPDGTSSGSYNDLIYQVFLGE 127 (561)
Q Consensus 48 g~~LrVgv~~~~~~~pf~~~~~d~~~~~~~~~~G~~idl~~~i~~~l~f~v~~~~v~~~~~~g~~ngs~~~li~~l~~g~ 127 (561)
.++|+||+. +.|+||.+.+.. ++++ ++.|+++|+++.+++++|++ ++++.. +|.+++.++.+|+
T Consensus 38 ~~~l~v~~~--~~~~P~~~~~~~--~~~g-~~~G~~~dl~~~~~~~~g~~--~~~~~~---------~~~~~~~~l~~g~ 101 (269)
T 4i62_A 38 KGKLVVALN--PDFAPFEYQKVV--DGKN-QIVGSDIELAKAIATELGVE--LELSPM---------SFDNVLASVQSGK 101 (269)
T ss_dssp HTEEEEEEC--SCBTTTBEEEEE--TTEE-EEESHHHHHHHHHHHHHTCE--EEEEEC---------CHHHHHHHHHTTS
T ss_pred CCeEEEEec--CCCCCceeeccc--CCCC-cEeeecHHHHHHHHHHHCCc--eEEEEc---------CHHHHHHHHhCCC
Confidence 458999997 788999882200 1355 89999999999999999975 555552 5999999999999
Q ss_pred ccEEEeceeeecCcceeeeccccccccceEEEEEccCCCCCCcceeccccchhhHHHHHHHHHHHHHHHhhhhcccCCCC
Q 037841 128 FDAAVGDITILLNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWALEHRVNEDF 207 (561)
Q Consensus 128 ~D~~vg~~~it~~R~~~vdfT~p~~~~~~~ivvp~~~~~~~~~~~fl~PF~~~vW~~~~~~~i~~~~v~~~l~~~~~~~~ 207 (561)
+|++++++..+++|.+.+.|+.||.....++++++....
T Consensus 102 ~D~~~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~~----------------------------------------- 140 (269)
T 4i62_A 102 ADLAISGVSKTDERSKVFDFSTPYYTAKNKLIVKKSDLA----------------------------------------- 140 (269)
T ss_dssp CSEECSSCBCCHHHHTTEEECSCCEECCEEEEEEGGGTT-----------------------------------------
T ss_pred ccEEecCCcCCHhHhhceecccchhhcceEEEEECCccc-----------------------------------------
Confidence 999998899999999999999999999999999976432
Q ss_pred CCCccCccchhHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHhHhhheeeeEeeccCCCcCCHHHHHhCCCee
Q 037841 208 RGPARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWYFVVLVLTQSYTASLTSLLTVQQLQPTITDVKMLIKRGDNV 287 (561)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~Ril~~~w~~~~lil~~~Yta~LtS~Lt~~~~~~~I~sl~dL~~~~~~v 287 (561)
+|++++|| .|++|
T Consensus 141 -----------------------------------------------------------------~i~~~~dL--~g~~i 153 (269)
T 4i62_A 141 -----------------------------------------------------------------TYQSVNDL--AQKKV 153 (269)
T ss_dssp -----------------------------------------------------------------TCSSGGGG--C-CEE
T ss_pred -----------------------------------------------------------------cccCHHHh--CCCeE
Confidence 27899999 69999
Q ss_pred EEEeCchHHHHHHhcCCCccceeecCChHHHHHHhhccccCCceeEEeecchhHHHHHhcCCcceEEeCcccc---cCce
Q 037841 288 GYQKGSFVLGILKQLGFDERKLVVYNSPEECHELFQKGSANGGIAAAFEEIPYGKLLVGQHCYKYTMVEPTFK---TAGF 364 (561)
Q Consensus 288 g~~~gs~~~~~l~~~~~~~~~~~~~~s~~~~~~~l~~g~~~~gv~a~i~~~~~~~~~l~~~~~~l~~v~~~~~---~~~~ 364 (561)
|+..|+....++++. .+..+++.+++.++++++|.+|+ +||++.+...+.++++++.. +.+....+. ..++
T Consensus 154 ~~~~g~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~g~----vDa~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 227 (269)
T 4i62_A 154 GAQKGSIQETMAKDL-LQNSSLVSLPKNGNLITDLKSGQ----VDAVIFEEPVAKGFVENNPD-LAIADLNFEKEQDDSY 227 (269)
T ss_dssp EEETTSHHHHHHHHH-CTTSEEEEESCHHHHHHHHHTTS----SSEEEEEHHHHHHHHHHCTT-EEECSCCCCC-CCCEE
T ss_pred EEecCchHHHHHHHh-CCCCcEEecCCHHHHHHHHHcCC----CCEEEeChHHHHHHHHhCCC-CeEEeeccCCCcccce
Confidence 999999999988874 45668889999999999999999 99999999999999888764 555544433 6678
Q ss_pred EEEecCCCC-ChhhHHHHHhhccccchhHHHHHHHccc
Q 037841 365 GFAFPLHSP-LVHDVSKAILSVTEGDKMKEIEDAWFKK 401 (561)
Q Consensus 365 ~~~~~k~sp-l~~~in~~Il~l~e~G~~~~i~~kw~~~ 401 (561)
+++++|++| +.+.+|++|.++.++|.++++.++|++.
T Consensus 228 ~~~~~~~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~~ 265 (269)
T 4i62_A 228 AVAMKKDSKELKEAVDKTIQKLKESGELDKLIEDAFKA 265 (269)
T ss_dssp CCEEESSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhCChHHHHHHHHhCC
Confidence 999999998 9999999999999999999999999964
No 32
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=99.85 E-value=1.9e-20 Score=184.39 Aligned_cols=219 Identities=17% Similarity=0.266 Sum_probs=191.3
Q ss_pred CceEEEEecCCCCCcceEEEeeCCCCCCCceEEEehHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCc
Q 037841 48 EKKLRIGVPVKKGFSYFVNVTIDPKTQEPTSVTGFCIDVFKAVIQELPYAVAYDFVPYGQPDGTSSGSYNDLIYQVFLGE 127 (561)
Q Consensus 48 g~~LrVgv~~~~~~~pf~~~~~d~~~~~~~~~~G~~idl~~~i~~~l~f~v~~~~v~~~~~~g~~ngs~~~li~~l~~g~ 127 (561)
.++|+||+. ++|+||.+.+. ++ ++.|+++|+++.+++++|++ ++++.. +|.+++.++.+|+
T Consensus 30 ~~~l~v~~~--~~~~P~~~~~~-----~g-~~~G~~~dl~~~i~~~~g~~--~~~~~~---------~~~~~~~~l~~g~ 90 (268)
T 3qax_A 30 NRIWIVGTN--ATYPPFEYVDA-----QG-EVVGFDIDLAKAISEKLGKQ--LEVREF---------AFDALILNLKKHR 90 (268)
T ss_dssp -CEEEEEEC--SCBTTTBEECT-----TS-CEESHHHHHHHHHHHHHTCE--EEEEEC---------CGGGHHHHHHHTS
T ss_pred CCeEEEEEC--CCCCCceEECC-----CC-CEEEEEHHHHHHHHHHhCCe--EEEEec---------CHHHHHHHHhCCC
Confidence 568999997 68899988753 45 89999999999999999974 555542 5899999999999
Q ss_pred ccEEEeceeeecCcceeeecccccc--ccceEEEEEccCCCCCCcceeccccchhhHHHHHHHHHHHHHHHhhhhcccCC
Q 037841 128 FDAAVGDITILLNRSNYVDFTLPYT--ESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWALEHRVNE 205 (561)
Q Consensus 128 ~D~~vg~~~it~~R~~~vdfT~p~~--~~~~~ivvp~~~~~~~~~~~fl~PF~~~vW~~~~~~~i~~~~v~~~l~~~~~~ 205 (561)
+|++++++..+++|.+.++| .||. ..+.++++++....
T Consensus 91 ~D~~~~~~~~~~~r~~~~~~-~p~~~~~~~~~~~~~~~~~~--------------------------------------- 130 (268)
T 3qax_A 91 IDAILAGMSITPSRQKEIAL-LPYYGDEVQELMVVSKRSLE--------------------------------------- 130 (268)
T ss_dssp SSEECSCCBCCHHHHTTSEE-EEEECCCBCEEEEEEETTSC---------------------------------------
T ss_pred ccEEeecCccCHhHhcceee-ecceecccceEEEEECCCCC---------------------------------------
Confidence 99998889999999999999 9999 88899999866422
Q ss_pred CCCCCccCccchhHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHhHhhheeeeEeeccCCCcCCHHHHHhCCC
Q 037841 206 DFRGPARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWYFVVLVLTQSYTASLTSLLTVQQLQPTITDVKMLIKRGD 285 (561)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~Ril~~~w~~~~lil~~~Yta~LtS~Lt~~~~~~~I~sl~dL~~~~~ 285 (561)
+++++|| +|+
T Consensus 131 --------------------------------------------------------------------i~~~~dL--~g~ 140 (268)
T 3qax_A 131 --------------------------------------------------------------------TPVLPLT--QYS 140 (268)
T ss_dssp --------------------------------------------------------------------SCCCCGG--GSS
T ss_pred --------------------------------------------------------------------CCCHHHh--CCC
Confidence 7889999 699
Q ss_pred eeEEEeCchHHHHHHhcCCCccceeecCChHHHHHHhhccccCCceeEEeecchhHHHHHhcCCcceEEeCcccccCc--
Q 037841 286 NVGYQKGSFVLGILKQLGFDERKLVVYNSPEECHELFQKGSANGGIAAAFEEIPYGKLLVGQHCYKYTMVEPTFKTAG-- 363 (561)
Q Consensus 286 ~vg~~~gs~~~~~l~~~~~~~~~~~~~~s~~~~~~~l~~g~~~~gv~a~i~~~~~~~~~l~~~~~~l~~v~~~~~~~~-- 363 (561)
+||+..|+....++.+ .+..+++.+++.++++++|.+|+ +||++.+...+.++++++.. +.+++..+....
T Consensus 141 ~i~~~~g~~~~~~l~~--~~~~~~~~~~~~~~~~~~l~~G~----vDa~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 213 (268)
T 3qax_A 141 SVAVQTGTYQEHYLLS--QPGICVRSFDSTLEVIMEVRYGK----SPVAVLEPSVGRVVLKDFPN-LVATRLELPPECWV 213 (268)
T ss_dssp CEEEETTSHHHHHHHT--STTCCEEEESCHHHHHHHHHTTS----SSEEEECHHHHHHHGGGCTT-EEEEEEECCGGGCB
T ss_pred EEEEecCcHHHHHHHh--CCCceEEecCCHHHHHHHHHcCC----CCEEEecHHHHHHHHHhCCC-cEEecCccCccccc
Confidence 9999999999999887 45668889999999999999999 99999999999999988875 777777777777
Q ss_pred --eEEEecCCCC-ChhhHHHHHhhccccchhHHHHHHHcccC
Q 037841 364 --FGFAFPLHSP-LVHDVSKAILSVTEGDKMKEIEDAWFKKH 402 (561)
Q Consensus 364 --~~~~~~k~sp-l~~~in~~Il~l~e~G~~~~i~~kw~~~~ 402 (561)
++++++|++| +++.+|++|.++.++|.++++.++|+...
T Consensus 214 ~~~~~~~~k~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~~~ 255 (268)
T 3qax_A 214 LGCGLGVAKDRPEEIQTIQQAITDLKSEGVIQSLTKKWQLSE 255 (268)
T ss_dssp CCEEEEECTTCHHHHHHHHHHHHHHHHTTHHHHHHHHTTCSC
T ss_pred ccEEEEEeCCCHHHHHHHHHHHHHHHHCCcHHHHHHHHcCCc
Confidence 8999999988 99999999999999999999999999643
No 33
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=99.84 E-value=2.7e-20 Score=186.15 Aligned_cols=228 Identities=16% Similarity=0.213 Sum_probs=192.0
Q ss_pred CCceEEEEecCCCCCcceEEEeeCCCCCCCceEEEehHHHHHHHHHH----CCC-ceeEEEEecCCCCCCCCCCHHHHHH
Q 037841 47 NEKKLRIGVPVKKGFSYFVNVTIDPKTQEPTSVTGFCIDVFKAVIQE----LPY-AVAYDFVPYGQPDGTSSGSYNDLIY 121 (561)
Q Consensus 47 ~g~~LrVgv~~~~~~~pf~~~~~d~~~~~~~~~~G~~idl~~~i~~~----l~f-~v~~~~v~~~~~~g~~ngs~~~li~ 121 (561)
..++|+||+. ++|+||.+.+. ++ ++.|+++|+++++++. +|. .+++++++. +|.+++.
T Consensus 15 ~~~~l~v~~~--~~~~P~~~~~~-----~g-~~~G~~~dl~~~ia~~l~~~~G~~~~~v~~~~~---------~~~~~~~ 77 (287)
T 2vha_A 15 KNGVIVVGHR--ESSVPFSYYDN-----QQ-KVVGYSQDYSNAIVEAVKKKLNKPDLQVKLIPI---------TSQNRIP 77 (287)
T ss_dssp HHTEEEEEEC--SEETTTEEECS-----SS-CEESHHHHHHHHHHHHHHHHTTCTTCEEEEEEC---------CTTTHHH
T ss_pred hCCeEEEEEc--CCCCCceEECC-----CC-CcccccHHHHHHHHHHHHHhcCCCCceEEEEEC---------CHHHHHH
Confidence 3578999997 67899998763 35 8999999999999976 562 146666663 4788999
Q ss_pred HHHcCcccEEEeceeeecCcceeeeccccccccceEEEEEccCCCCCCcceeccccchhhHHHHHHHHHHHHHHHhhhhc
Q 037841 122 QVFLGEFDAAVGDITILLNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWALEH 201 (561)
Q Consensus 122 ~l~~g~~D~~vg~~~it~~R~~~vdfT~p~~~~~~~ivvp~~~~~~~~~~~fl~PF~~~vW~~~~~~~i~~~~v~~~l~~ 201 (561)
++.+|++|++++++..+.+|.+.++||.||...+.++++++..+
T Consensus 78 ~l~~g~~D~~~~~~~~t~~r~~~~~~s~p~~~~~~~l~~~~~~~------------------------------------ 121 (287)
T 2vha_A 78 LLQNGTFDFECGSTTNNVERQKQAAFSDTIFVVGTRLLTKKGGD------------------------------------ 121 (287)
T ss_dssp HHHTTSCSEECSSCBCCHHHHTTCEEEEEEEEEEEEEEEETTSS------------------------------------
T ss_pred HHHCCCeeEEeccccCCcchhhcccccceeeecceEEEEECCCC------------------------------------
Confidence 99999999998888899999999999999999999999986532
Q ss_pred ccCCCCCCCccCccchhHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHhHhhheeeeEeeccCCCcCCHHHHH
Q 037841 202 RVNEDFRGPARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWYFVVLVLTQSYTASLTSLLTVQQLQPTITDVKMLI 281 (561)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~Ril~~~w~~~~lil~~~Yta~LtS~Lt~~~~~~~I~sl~dL~ 281 (561)
|++++||
T Consensus 122 ------------------------------------------------------------------------i~sl~dL- 128 (287)
T 2vha_A 122 ------------------------------------------------------------------------IKDFADL- 128 (287)
T ss_dssp ------------------------------------------------------------------------CCSGGGG-
T ss_pred ------------------------------------------------------------------------CCCHHHc-
Confidence 6889999
Q ss_pred hCCCeeEEEeCchHHHHHHhcC---CCccceeecCChHHHHHHhhccccCCceeEEeecchhHHHHHhcCC--cceEEeC
Q 037841 282 KRGDNVGYQKGSFVLGILKQLG---FDERKLVVYNSPEECHELFQKGSANGGIAAAFEEIPYGKLLVGQHC--YKYTMVE 356 (561)
Q Consensus 282 ~~~~~vg~~~gs~~~~~l~~~~---~~~~~~~~~~s~~~~~~~l~~g~~~~gv~a~i~~~~~~~~~l~~~~--~~l~~v~ 356 (561)
.|++||+..|+....++++.. ....+++.+.+.++++++|..|+ +|+++.+...+.+++++.. ..+.+++
T Consensus 129 -~g~~v~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~G~----vDa~i~~~~~~~~~~~~~~~~~~~~~~~ 203 (287)
T 2vha_A 129 -KGKAVVVTSGTTSEVLLNKLNEEQKMNMRIISAKDHGDSFRTLESGR----AVAFMMDDALLAGERAKAKKPDNWDIVG 203 (287)
T ss_dssp -TTCEEEEETTSHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHTTS----CSEEEEEHHHHHHHHTTSSSGGGEEEES
T ss_pred -CCCEEEEeCCCcHHHHHHHHhhccCCCceEEEcCCHHHHHHHHHcCC----eeEEEeChHHHHHHHHhCCCCCceEecC
Confidence 689999999998888876531 12457788999999999999999 9999999999998888752 3588888
Q ss_pred cccccCceEEEecCCCC-ChhhHHHHHhhccccchhHHHHHHHcccCCCC
Q 037841 357 PTFKTAGFGFAFPLHSP-LVHDVSKAILSVTEGDKMKEIEDAWFKKHSSC 405 (561)
Q Consensus 357 ~~~~~~~~~~~~~k~sp-l~~~in~~Il~l~e~G~~~~i~~kw~~~~~~c 405 (561)
..+...+++++++|++| ++..||++|.++.++|.++++.++|+.....+
T Consensus 204 ~~~~~~~~~~~~~k~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~~~~~~ 253 (287)
T 2vha_A 204 KPQSQEAYGCMLRKDDPQFKKLMDDTIAQVQTSGEAEKWFDKWFKNPIPP 253 (287)
T ss_dssp CCSCEEEEEEEECTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHSCBTT
T ss_pred CccccCceEEEEeCCCHHHHHHHHHHHHHHHhCchHHHHHHHHcCCCCCc
Confidence 77778889999999988 99999999999999999999999999755433
No 34
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=99.84 E-value=2e-20 Score=187.29 Aligned_cols=219 Identities=17% Similarity=0.240 Sum_probs=189.5
Q ss_pred CceEEEEecCCCCCcceEEEeeCCCCCCCceEEEehHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCc
Q 037841 48 EKKLRIGVPVKKGFSYFVNVTIDPKTQEPTSVTGFCIDVFKAVIQELPYAVAYDFVPYGQPDGTSSGSYNDLIYQVFLGE 127 (561)
Q Consensus 48 g~~LrVgv~~~~~~~pf~~~~~d~~~~~~~~~~G~~idl~~~i~~~l~f~v~~~~v~~~~~~g~~ngs~~~li~~l~~g~ 127 (561)
.++|+||+. ++|+||.+.+. ++ .+.|+++|+++.+++++|++ ++++.. +|..++.+|.+|+
T Consensus 56 ~~~l~v~~~--~~~~P~~~~~~-----~g-~~~G~~~dl~~~i~~~~G~~--v~~~~~---------~~~~~~~~l~~G~ 116 (283)
T 2yln_A 56 KGTVTVGTE--GTYAPFTYHDK-----DG-KLTGYDVEVTRAVAEKLGVK--VEFKET---------QWDSMMAGLKAGR 116 (283)
T ss_dssp TCEEEEEEC--SEETTTEEECT-----TS-CEESHHHHHHHHHHHHHTCE--EEEEEC---------CGGGHHHHHHHTS
T ss_pred CCeEEEEEC--CCCCCeeEECC-----CC-CEeeehHHHHHHHHHHcCCc--eEEEEC---------CHHHHHHHHHCCC
Confidence 468999997 56999998763 45 89999999999999999974 555552 4899999999999
Q ss_pred ccEEEeceee-ecCcceeeeccccccccceEEEEEccCCCCCCcceeccccchhhHHHHHHHHHHHHHHHhhhhcccCCC
Q 037841 128 FDAAVGDITI-LLNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWALEHRVNED 206 (561)
Q Consensus 128 ~D~~vg~~~i-t~~R~~~vdfT~p~~~~~~~ivvp~~~~~~~~~~~fl~PF~~~vW~~~~~~~i~~~~v~~~l~~~~~~~ 206 (561)
+|++++++.. +.+|.+.++|+.||...+.++++++...
T Consensus 117 ~D~~~~~~~~~t~~r~~~~~~~~p~~~~~~~l~~~~~~~----------------------------------------- 155 (283)
T 2yln_A 117 FDVVANQVGLTSPERQATFDKSEPYSWSGAVLVAHNDSN----------------------------------------- 155 (283)
T ss_dssp CSEECSSCCCCSHHHHHHEEECSCSEEECEEEEEETTCS-----------------------------------------
T ss_pred cCEEEecCccCChhhhcceEeccCeeeecEEEEEECCCC-----------------------------------------
Confidence 9999987887 8999999999999999999999986542
Q ss_pred CCCCccCccchhHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHhHhhheeeeEeeccCCCcCCHHHHHhCCCe
Q 037841 207 FRGPARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWYFVVLVLTQSYTASLTSLLTVQQLQPTITDVKMLIKRGDN 286 (561)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~Ril~~~w~~~~lil~~~Yta~LtS~Lt~~~~~~~I~sl~dL~~~~~~ 286 (561)
|++++|| .|++
T Consensus 156 -------------------------------------------------------------------i~s~~dL--~G~~ 166 (283)
T 2yln_A 156 -------------------------------------------------------------------IKSIADI--KGVK 166 (283)
T ss_dssp -------------------------------------------------------------------CCSGGGC--TTSE
T ss_pred -------------------------------------------------------------------CCCHHHh--CCCE
Confidence 6889999 6999
Q ss_pred eEEEeCchHHHHHHhcCCCccceeecCChHHHHHHhhccccCCceeEEeecchhHHHHHhcCCc-ceEEeC-cccc-cCc
Q 037841 287 VGYQKGSFVLGILKQLGFDERKLVVYNSPEECHELFQKGSANGGIAAAFEEIPYGKLLVGQHCY-KYTMVE-PTFK-TAG 363 (561)
Q Consensus 287 vg~~~gs~~~~~l~~~~~~~~~~~~~~s~~~~~~~l~~g~~~~gv~a~i~~~~~~~~~l~~~~~-~l~~v~-~~~~-~~~ 363 (561)
||+..|+....++++.+ .+++.+.+.++++++|..|+ +|+++.+...+.+++++... .+.+++ ..+. ...
T Consensus 167 v~v~~g~~~~~~l~~~~---~~~~~~~~~~~~~~~l~~g~----vDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 239 (283)
T 2yln_A 167 TAQSLTSNYGEKAKAAG---AQLVPVDGLAQSLTLIEQKR----ADATLNDELAVLDYLKKNPNAGVKIVWSAPADEKVG 239 (283)
T ss_dssp EEECTTSHHHHHHHHTT---CEEEECSSHHHHHHHHHTTS----CCEEEEEHHHHHHHHHHSTTSSEEEEEECCGGGCEE
T ss_pred EEEecCchHHHHHHHcC---CeEEEeCCHHHHHHHHHcCC----CCEEEecHHHHHHHHHhCCCCcEEEccCcccCCccc
Confidence 99999999988888753 46788889999999999999 99999999999998887643 477777 6666 678
Q ss_pred eEEEecCCCC-ChhhHHHHHhhccccchhHHHHHHHcccC
Q 037841 364 FGFAFPLHSP-LVHDVSKAILSVTEGDKMKEIEDAWFKKH 402 (561)
Q Consensus 364 ~~~~~~k~sp-l~~~in~~Il~l~e~G~~~~i~~kw~~~~ 402 (561)
++++++|++| +.+.|+++|.++.++|.+++|.++|++..
T Consensus 240 ~~i~~~k~~~~l~~~i~~al~~l~~~g~~~~i~~k~~~~~ 279 (283)
T 2yln_A 240 SGLIVNKGNDEAVAKFSTAINELKADGTLKKLGEQFFGKD 279 (283)
T ss_dssp ECCEEESSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHSSC
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHCCcHHHHHHHHcCCC
Confidence 8999999987 99999999999999999999999999654
No 35
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=99.83 E-value=3.9e-20 Score=185.66 Aligned_cols=218 Identities=19% Similarity=0.194 Sum_probs=189.7
Q ss_pred CceEEEEecCCCCCcceEEEeeCCCCCCCceEEEehHHHHHHHHHHC---CCceeEEEEecCCCCCCCCCCHHHHHHHHH
Q 037841 48 EKKLRIGVPVKKGFSYFVNVTIDPKTQEPTSVTGFCIDVFKAVIQEL---PYAVAYDFVPYGQPDGTSSGSYNDLIYQVF 124 (561)
Q Consensus 48 g~~LrVgv~~~~~~~pf~~~~~d~~~~~~~~~~G~~idl~~~i~~~l---~f~v~~~~v~~~~~~g~~ngs~~~li~~l~ 124 (561)
.++|+||+. ++|+||.+.+. ++ .+.|+++|+++.+++++ |+++++ +.. +|.+++.++.
T Consensus 43 ~~~l~v~~~--~~~~P~~~~~~-----~g-~~~G~~~dl~~~i~~~~~~~g~~~~~--~~~---------~~~~~~~~l~ 103 (292)
T 1xt8_A 43 NGVVRIGVF--GDKPPFGYVDE-----KG-NNQGYDIALAKRIAKELFGDENKVQF--VLV---------EAANRVEFLK 103 (292)
T ss_dssp HSSEEEEEC--SEETTTEEECT-----TS-CEESHHHHHHHHHHHHHHSCTTCEEE--EEC---------CGGGHHHHHH
T ss_pred CCeEEEEEC--CCCCCeeEECC-----CC-CEeeEhHHHHHHHHHHhccCCceEEE--EEc---------CHHHHHHHHh
Confidence 467999997 67899998752 45 89999999999999999 985554 442 4889999999
Q ss_pred cCcccEEEeceeeecCcceeeeccccccccceEEEEEccCCCCCCcceeccccchhhHHHHHHHHHHHHHHHhhhhcccC
Q 037841 125 LGEFDAAVGDITILLNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWALEHRVN 204 (561)
Q Consensus 125 ~g~~D~~vg~~~it~~R~~~vdfT~p~~~~~~~ivvp~~~~~~~~~~~fl~PF~~~vW~~~~~~~i~~~~v~~~l~~~~~ 204 (561)
+|++|++++++..+.+|.+.++|+.||...+.++++++...
T Consensus 104 ~G~~D~~~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~--------------------------------------- 144 (292)
T 1xt8_A 104 SNKVDIILANFTQTPQRAEQVDFCSPYMKVALGVAVPKDSN--------------------------------------- 144 (292)
T ss_dssp TTSCSEECSSCBCCHHHHTTEEECCCCEEEEEEEEEETTCC---------------------------------------
T ss_pred CCCeeEEeecCCCCcchhcceeeeccceecceEEEEECCCC---------------------------------------
Confidence 99999998878889999999999999999999999986541
Q ss_pred CCCCCCccCccchhHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHhHhhheeeeEeeccCCCcCCHHHHHhCC
Q 037841 205 EDFRGPARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWYFVVLVLTQSYTASLTSLLTVQQLQPTITDVKMLIKRG 284 (561)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~Ril~~~w~~~~lil~~~Yta~LtS~Lt~~~~~~~I~sl~dL~~~~ 284 (561)
+++++|| .|
T Consensus 145 ---------------------------------------------------------------------i~~~~dL--~g 153 (292)
T 1xt8_A 145 ---------------------------------------------------------------------ITSVEDL--KD 153 (292)
T ss_dssp ---------------------------------------------------------------------CCSSGGG--TT
T ss_pred ---------------------------------------------------------------------CCCHHHh--CC
Confidence 6889999 69
Q ss_pred CeeEEEeCchHHHHHHhcCCCccceeecCChHHHHHHhhccccCCceeEEeecchhHHHHHhcCCcceEEeCcccccCce
Q 037841 285 DNVGYQKGSFVLGILKQLGFDERKLVVYNSPEECHELFQKGSANGGIAAAFEEIPYGKLLVGQHCYKYTMVEPTFKTAGF 364 (561)
Q Consensus 285 ~~vg~~~gs~~~~~l~~~~~~~~~~~~~~s~~~~~~~l~~g~~~~gv~a~i~~~~~~~~~l~~~~~~l~~v~~~~~~~~~ 364 (561)
++||+..|+....++++. .+..+++.+.+.++.+++|..|+ +|+++.+...+.++++++.+ +.+++..+...++
T Consensus 154 ~~i~~~~g~~~~~~l~~~-~~~~~~~~~~~~~~~~~~L~~G~----vDa~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~ 227 (292)
T 1xt8_A 154 KTLLLNKGTTADAYFTQN-YPNIKTLKYDQNTETFAALMDKR----GDALSHDNTLLFAWVKDHPD-FKMGIKELGNKDV 227 (292)
T ss_dssp SEEEEETTSHHHHHHHHH-CTTSEEEEESSHHHHHHHHHTTS----SSEEEEEHHHHHHHHHHCTT-EEEEEEEEEEEEE
T ss_pred CEEEEeCCCcHHHHHHHh-CCCceEEEcCCHHHHHHHHHcCC----ccEEEecHHHHHHHHHhCCC-eEEcccccccCce
Confidence 999999999998888775 34567788999999999999999 99999999999999888764 7777766666777
Q ss_pred -EEEecCCCC-ChhhHHHHHhhccccchhHHHHHHHcc
Q 037841 365 -GFAFPLHSP-LVHDVSKAILSVTEGDKMKEIEDAWFK 400 (561)
Q Consensus 365 -~~~~~k~sp-l~~~in~~Il~l~e~G~~~~i~~kw~~ 400 (561)
+++++|++| +.+.+|++|.++.++|.+++|.++|++
T Consensus 228 ~~~~~~k~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~ 265 (292)
T 1xt8_A 228 IAPAVKKGDKELKEFIDNLIIKLGQEQFFHKAYDETLK 265 (292)
T ss_dssp ECCEEETTCHHHHHHHHHHHHHHHTTTHHHHHHHHHTG
T ss_pred eEEEEeCCCHHHHHHHHHHHHHHHhCcHHHHHHHHhcC
Confidence 999999988 999999999999999999999999996
No 36
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=99.83 E-value=4.5e-20 Score=185.45 Aligned_cols=218 Identities=20% Similarity=0.257 Sum_probs=190.1
Q ss_pred CceEEEEecCCCCCcceEEEeeCCCCCCCceEEEehHHHHHHHHHHC---CCceeEEEEecCCCCCCCCCCHHHHHHHHH
Q 037841 48 EKKLRIGVPVKKGFSYFVNVTIDPKTQEPTSVTGFCIDVFKAVIQEL---PYAVAYDFVPYGQPDGTSSGSYNDLIYQVF 124 (561)
Q Consensus 48 g~~LrVgv~~~~~~~pf~~~~~d~~~~~~~~~~G~~idl~~~i~~~l---~f~v~~~~v~~~~~~g~~ngs~~~li~~l~ 124 (561)
.++||||+. ++|+||.+.+. ++ ++.|+++|+++.+++++ |+++++ +.. +|.+++.+|.
T Consensus 54 ~~~l~vg~~--~~~~P~~~~~~-----~g-~~~G~~~dl~~~i~~~~~~~g~~v~~--~~~---------~~~~~~~~l~ 114 (291)
T 2yjp_A 54 KGVIRIGVF--GDKPPFGYVDA-----NG-KNQGFDVEIAKDLAKDLLGSPDKVEF--VLT---------EAANRVEYVR 114 (291)
T ss_dssp HTCEEEEEC--SEETTTEEECT-----TS-CEESHHHHHHHHHHHHHHSCGGGEEE--EEC---------CGGGHHHHHH
T ss_pred CCeEEEEEc--CCCCCceEECC-----CC-CEeehHHHHHHHHHHHhccCCceEEE--EEc---------cHHHHHHHHh
Confidence 357999997 67899988762 45 89999999999999999 975544 442 4789999999
Q ss_pred cCcccEEEeceeeecCcceeeeccccccccceEEEEEccCCCCCCcceeccccchhhHHHHHHHHHHHHHHHhhhhcccC
Q 037841 125 LGEFDAAVGDITILLNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWALEHRVN 204 (561)
Q Consensus 125 ~g~~D~~vg~~~it~~R~~~vdfT~p~~~~~~~ivvp~~~~~~~~~~~fl~PF~~~vW~~~~~~~i~~~~v~~~l~~~~~ 204 (561)
+|++|++++++..+.+|.+.++|+.||...+.++++++.. .
T Consensus 115 ~G~~D~~~~~~~~~~~r~~~~~~~~p~~~~~~~l~~~~~~-~-------------------------------------- 155 (291)
T 2yjp_A 115 SGKVDLILANFTQTPERAEAVDFADPYMKVALGVVSPKNK-P-------------------------------------- 155 (291)
T ss_dssp TTSCSEECSSCBCCHHHHTTEEECCCCEEECEEEEEETTS-C--------------------------------------
T ss_pred CCCeeEEEeCCCCChHHHccceeccCeeecceEEEEeCCC-C--------------------------------------
Confidence 9999999988888999999999999999999999998654 1
Q ss_pred CCCCCCccCccchhHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHhHhhheeeeEeeccCCCcCCHHHHHhCC
Q 037841 205 EDFRGPARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWYFVVLVLTQSYTASLTSLLTVQQLQPTITDVKMLIKRG 284 (561)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~Ril~~~w~~~~lil~~~Yta~LtS~Lt~~~~~~~I~sl~dL~~~~ 284 (561)
|++++|| .|
T Consensus 156 ---------------------------------------------------------------------i~sl~dL--~g 164 (291)
T 2yjp_A 156 ---------------------------------------------------------------------ITDMAQL--KD 164 (291)
T ss_dssp ---------------------------------------------------------------------CCSGGGG--TT
T ss_pred ---------------------------------------------------------------------CCCHHHh--CC
Confidence 7899999 69
Q ss_pred CeeEEEeCchHHHHHHhcCCCccceeecCChHHHHHHhhccccCCceeEEeecchhHHHHHhcCCcceEEeCcccccCce
Q 037841 285 DNVGYQKGSFVLGILKQLGFDERKLVVYNSPEECHELFQKGSANGGIAAAFEEIPYGKLLVGQHCYKYTMVEPTFKTAGF 364 (561)
Q Consensus 285 ~~vg~~~gs~~~~~l~~~~~~~~~~~~~~s~~~~~~~l~~g~~~~gv~a~i~~~~~~~~~l~~~~~~l~~v~~~~~~~~~ 364 (561)
++||+..|+....++++. ++..+++.+.+.++++++|.+|+ +||++.+...+.+++++... +.+++..+...++
T Consensus 165 k~v~~~~g~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~G~----vDa~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 238 (291)
T 2yjp_A 165 QTLLVNKGTTADAFFTKS-HPEVKLLKFDQNTETFDALKDGR----GVALAHDNALLWAWAKENPN-FEVAIGNLGPAEF 238 (291)
T ss_dssp SEEEEETTSHHHHHHHHH-CTTSEEEEESSHHHHHHHHHTTS----SSEEEEEHHHHHHHHHHCTT-EEEEECCSSSCEE
T ss_pred CEEEEecCCcHHHHHHHh-CCCceEEEeCCHHHHHHHHHcCC----ccEEEecHHHHHHHHHhCCC-eEEcCCcccCCcc
Confidence 999999999988888875 34567888999999999999999 99999999999998888765 7788777777777
Q ss_pred -EEEecCCCC-ChhhHHHHHhhccccchhHHHHHHHcc
Q 037841 365 -GFAFPLHSP-LVHDVSKAILSVTEGDKMKEIEDAWFK 400 (561)
Q Consensus 365 -~~~~~k~sp-l~~~in~~Il~l~e~G~~~~i~~kw~~ 400 (561)
+++++|++| +.+.||++|.++.++|.++++.++|+.
T Consensus 239 ~~~~~~k~~~~l~~~l~~al~~l~~~g~~~~i~~k~~~ 276 (291)
T 2yjp_A 239 IAPAVQKGNADLLNWVNGEIAAMKKDGRLKAAYEKTLL 276 (291)
T ss_dssp ECCEEETTCHHHHHHHHHHHHHHHHHSHHHHHHHHHTH
T ss_pred eEEEEeCCCHHHHHHHHHHHHHHHhCChHHHHHHHhcc
Confidence 999999988 999999999999999999999999985
No 37
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=99.74 E-value=4.6e-18 Score=166.15 Aligned_cols=214 Identities=15% Similarity=0.258 Sum_probs=178.2
Q ss_pred CceEEEEecCCCCCcceEEEeeCCCCCCCceEEEehHHHHHHHHHHC---CCceeEEEEecCCCCCCCCCCHHHHHHHHH
Q 037841 48 EKKLRIGVPVKKGFSYFVNVTIDPKTQEPTSVTGFCIDVFKAVIQEL---PYAVAYDFVPYGQPDGTSSGSYNDLIYQVF 124 (561)
Q Consensus 48 g~~LrVgv~~~~~~~pf~~~~~d~~~~~~~~~~G~~idl~~~i~~~l---~f~v~~~~v~~~~~~g~~ngs~~~li~~l~ 124 (561)
.++|+||+. ++++||.+.+. +++ ++.|+++|+++.+++++ |+++++ +.. +|.+++.++.
T Consensus 37 ~~~l~vg~~--~~~~p~~~~~~----~~g-~~~G~~~~l~~~~~~~~~~pg~~v~~--~~~---------~~~~~~~~l~ 98 (259)
T 2v25_A 37 KGQLIVGVK--NDVPHYALLDQ----ATG-EIKGFEVDVAKLLAKSILGDDKKIKL--VAV---------NAKTRGPLLD 98 (259)
T ss_dssp HTCEEEEEC--SEETTTEEEET----TTT-EEESHHHHHHHHHHHHHHSCTTSEEE--EEC---------CTTTHHHHHH
T ss_pred CCeEEEEEC--CCCCCeEEEEC----CCC-eEEEeeHHHHHHHHHHhcCCCcceEE--EEc---------CHHHHHHHHh
Confidence 467999997 67889988652 245 89999999999999999 875544 442 4788999999
Q ss_pred cCcccEEEeceeeecCcceeeeccccccccceEEEEEccCCCCCCcceeccccchhhHHHHHHHHHHHHHHHhhhhcccC
Q 037841 125 LGEFDAAVGDITILLNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWALEHRVN 204 (561)
Q Consensus 125 ~g~~D~~vg~~~it~~R~~~vdfT~p~~~~~~~ivvp~~~~~~~~~~~fl~PF~~~vW~~~~~~~i~~~~v~~~l~~~~~ 204 (561)
+|++|++++++..+.+|.+.++|+.||.....++++++..+
T Consensus 99 ~g~~D~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~--------------------------------------- 139 (259)
T 2v25_A 99 NGSVDAVIATFTITPERKRIYNFSEPYYQDAIGLLVLKEKK--------------------------------------- 139 (259)
T ss_dssp TTSCSEECSSCBCCHHHHTTEEECSCSEEEEEEEEEEGGGC---------------------------------------
T ss_pred CCCCCEEEecCccCHHHHhcCcccccceeCceEEEEeCCCC---------------------------------------
Confidence 99999998878888899999999999999999999986532
Q ss_pred CCCCCCccCccchhHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHhHhhheeeeEeeccCCCcCCHHHHHhCC
Q 037841 205 EDFRGPARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWYFVVLVLTQSYTASLTSLLTVQQLQPTITDVKMLIKRG 284 (561)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~Ril~~~w~~~~lil~~~Yta~LtS~Lt~~~~~~~I~sl~dL~~~~ 284 (561)
+++++|| .|
T Consensus 140 ---------------------------------------------------------------------i~~~~dL--~g 148 (259)
T 2v25_A 140 ---------------------------------------------------------------------YKSLADM--KG 148 (259)
T ss_dssp ---------------------------------------------------------------------CCSGGGC--TT
T ss_pred ---------------------------------------------------------------------CCCHHHh--CC
Confidence 6789999 58
Q ss_pred CeeEEEeCchHHHHHHh----cCCCccceeecCChHHHHHHhhccccCCceeEEeecchhHHHHHhcCCcceEEeCcccc
Q 037841 285 DNVGYQKGSFVLGILKQ----LGFDERKLVVYNSPEECHELFQKGSANGGIAAAFEEIPYGKLLVGQHCYKYTMVEPTFK 360 (561)
Q Consensus 285 ~~vg~~~gs~~~~~l~~----~~~~~~~~~~~~s~~~~~~~l~~g~~~~gv~a~i~~~~~~~~~l~~~~~~l~~v~~~~~ 360 (561)
+++++..|+....++++ .+.+ .+++.+++.++.+++|..|+ +|+++.+...+.++++++.. +++..+.
T Consensus 149 ~~i~~~~g~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~l~~g~----vDa~~~~~~~~~~~~~~~~~---~~~~~~~ 220 (259)
T 2v25_A 149 ANIGVAQAATTKKAIGEAAKKIGID-VKFSEFPDYPSIKAALDAKR----VDAFSVDKSILLGYVDDKSE---ILPDSFE 220 (259)
T ss_dssp CEEEEETTCSHHHHHHHHHHHTTCC-CEEEEESSHHHHHHHHHTTS----SSEEEEEHHHHTTTCCTTEE---ECSCCCS
T ss_pred CEEEEecCCchHHHHHHHHHhcCCc-eeEEEeCCHHHHHHHHHcCC----CcEEEecHHHHHHHHHhCCC---ccccccc
Confidence 89999999887776654 2432 25678899999999999999 99999999888888776653 5566666
Q ss_pred cCceEEEecCCCC-ChhhHHHHHhhccccchhHHHHHHHc
Q 037841 361 TAGFGFAFPLHSP-LVHDVSKAILSVTEGDKMKEIEDAWF 399 (561)
Q Consensus 361 ~~~~~~~~~k~sp-l~~~in~~Il~l~e~G~~~~i~~kw~ 399 (561)
..+++++++|+.| +.+.+|++|.++.++ ++++.++|.
T Consensus 221 ~~~~~~~~~k~~~~l~~~~~~~l~~~~~~--~~~i~~k~~ 258 (259)
T 2v25_A 221 PQSYGIVTKKDDPAFAKYVDDFVKEHKNE--IDALAKKWG 258 (259)
T ss_dssp EEEECCEEETTCHHHHHHHHHHHHHTHHH--HHHHHHHTT
T ss_pred cceeEEEEcCCCHHHHHHHHHHHHHHHHH--HHHHHHHhC
Confidence 6778999999986 999999999999998 899999984
No 38
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=98.96 E-value=2.5e-09 Score=108.13 Aligned_cols=213 Identities=12% Similarity=0.024 Sum_probs=144.7
Q ss_pred ceEEEEecCCCCCcceEEEeeCCCCCCCceEEEehHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCcc
Q 037841 49 KKLRIGVPVKKGFSYFVNVTIDPKTQEPTSVTGFCIDVFKAVIQELPYAVAYDFVPYGQPDGTSSGSYNDLIYQVFLGEF 128 (561)
Q Consensus 49 ~~LrVgv~~~~~~~pf~~~~~d~~~~~~~~~~G~~idl~~~i~~~l~f~v~~~~v~~~~~~g~~ngs~~~li~~l~~g~~ 128 (561)
++|+||+. +.+.|+.... ...++.+.+++++|. +++++... +|++++..|.+|++
T Consensus 4 ~~l~iG~~--p~~~p~~~~~-------------~~~~l~~~l~k~lG~--~ve~~~~~--------~~~~~i~al~~G~v 58 (310)
T 3n5l_A 4 PVINFGII--STESSQNLKS-------------IWEPFLKDMSQQTGY--QVKAFFAP--------DYAGIIQGMRFDKV 58 (310)
T ss_dssp CEEEEEEC--CSSCHHHHHH-------------HHHHHHHHHHHHHSS--EEEEECCS--------SHHHHHHHHHTTSC
T ss_pred cEEEEEEe--cCCCHHHHHH-------------HHHHHHHHHHHHhCC--CEEEEeCC--------CHHHHHHHHHcCCC
Confidence 67999998 6777765321 235899999999997 45555433 79999999999999
Q ss_pred cEEEec-eeeec--Ccceeeecccccc-----ccceEEEEEccCCCCCCcceeccccchhhHHHHHHHHHHHHHHHhhhh
Q 037841 129 DAAVGD-ITILL--NRSNYVDFTLPYT-----ESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWALE 200 (561)
Q Consensus 129 D~~vg~-~~it~--~R~~~vdfT~p~~-----~~~~~ivvp~~~~~~~~~~~fl~PF~~~vW~~~~~~~i~~~~v~~~l~ 200 (561)
|+++.+ ..... +|.....|..++. ....+++|++..
T Consensus 59 Di~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~~lvv~~ds------------------------------------ 102 (310)
T 3n5l_A 59 DIAWYGNKAAMEAVDRAHGEIFAQTVAASGAPGYWSLLIANKDS------------------------------------ 102 (310)
T ss_dssp SEEECCHHHHHHHHHHSCEEEEEEEEETTCCSEEEEEEEEETTC------------------------------------
T ss_pred CEEEECcHHHHHHHHhcCCeEEEEEeccCCCcceEEEEEEECCC------------------------------------
Confidence 999744 33222 2223334433221 012356666432
Q ss_pred cccCCCCCCCccCccchhHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHhHhhheeeeEeeccCCCcCCHHHH
Q 037841 201 HRVNEDFRGPARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWYFVVLVLTQSYTASLTSLLTVQQLQPTITDVKML 280 (561)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~Ril~~~w~~~~lil~~~Yta~LtS~Lt~~~~~~~I~sl~dL 280 (561)
+|++++||
T Consensus 103 ------------------------------------------------------------------------~i~sl~DL 110 (310)
T 3n5l_A 103 ------------------------------------------------------------------------KIDSLEDM 110 (310)
T ss_dssp ------------------------------------------------------------------------SCCSHHHH
T ss_pred ------------------------------------------------------------------------CCCCHHHH
Confidence 27999999
Q ss_pred Hh--CCCeeEEE-eCch----HHHH-H-HhcCCCc---cceeecCChHHHHHHhhccccCCceeEEeecchhHHHHHhcC
Q 037841 281 IK--RGDNVGYQ-KGSF----VLGI-L-KQLGFDE---RKLVVYNSPEECHELFQKGSANGGIAAAFEEIPYGKLLVGQH 348 (561)
Q Consensus 281 ~~--~~~~vg~~-~gs~----~~~~-l-~~~~~~~---~~~~~~~s~~~~~~~l~~g~~~~gv~a~i~~~~~~~~~l~~~ 348 (561)
++ +|+++++. .|+. ...+ | ++.+.+. .+.+.+.+.++.+.+|..|+ +|+.+.+...+..+.++.
T Consensus 111 ~~~~kgk~ia~~~~gs~~~~l~~~~~l~~~~Gi~~~~~~~~v~~g~~~~~~~al~~G~----vDa~~~~~~~~~~~~~~~ 186 (310)
T 3n5l_A 111 LANAKSLTFGNGDPNSTSGYLVPGYYVFAKNNVDPVKAFKRTLNSSHEVNALAVANKQ----VDVATFNTEGMERLELTQ 186 (310)
T ss_dssp HHTGGGCEEEECCTTCTTTTHHHHHHTTTTTTCCHHHHSSEEEECCHHHHHHHHHTTS----SSEEEEEHHHHHHHHHHC
T ss_pred hhhcCCCEEEecCCCccHhHHHHHHHHHHHcCCChHHhccccccCCHHHHHHHHHcCC----ccEEEecchhHHHHHHhC
Confidence 54 46788863 3332 2222 3 4445442 23344467778999999999 999999998888887764
Q ss_pred C---cceEEeCcccccCceEEEecCCCC--ChhhHHHHHhhccccchhHHHHHHH
Q 037841 349 C---YKYTMVEPTFKTAGFGFAFPLHSP--LVHDVSKAILSVTEGDKMKEIEDAW 398 (561)
Q Consensus 349 ~---~~l~~v~~~~~~~~~~~~~~k~sp--l~~~in~~Il~l~e~G~~~~i~~kw 398 (561)
. .++.++........++++++++-| +++.++++|.++.++|..+++.+++
T Consensus 187 ~~~~~~lrvl~~s~~~p~~~i~~~~~~~~~l~~~l~~al~~~~~d~~~~~~l~~~ 241 (310)
T 3n5l_A 187 PEKARQLKVIWKSPLIPGDPLVWRNNLSDEQKNKLRDFFFKYGANAEQKKVLADL 241 (310)
T ss_dssp HHHHTTEEEEEEEEEEECCEEEEETTSCHHHHHHHHHHHHHCCCSHHHHHHHHHT
T ss_pred ccchhCEEEEEECCCCCCCcEEEECCCCHHHHHHHHHHHHhcCCChhHHHHHHhc
Confidence 2 246666544333456899999954 9999999999999999988887776
No 39
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=98.88 E-value=1e-08 Score=104.16 Aligned_cols=212 Identities=14% Similarity=0.078 Sum_probs=144.1
Q ss_pred CceEEEEecCCCCCcceEEEeeCCCCCCCceEEEehHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCc
Q 037841 48 EKKLRIGVPVKKGFSYFVNVTIDPKTQEPTSVTGFCIDVFKAVIQELPYAVAYDFVPYGQPDGTSSGSYNDLIYQVFLGE 127 (561)
Q Consensus 48 g~~LrVgv~~~~~~~pf~~~~~d~~~~~~~~~~G~~idl~~~i~~~l~f~v~~~~v~~~~~~g~~ngs~~~li~~l~~g~ 127 (561)
.++|+||+. |.+.|... .....++++.+++++|+. ++++... +|++++..|.+|+
T Consensus 13 ~~~l~~Gv~--p~~~~~~~-------------~~~~~~l~~~L~k~lG~~--ve~~~~~--------~~~~~i~aL~~G~ 67 (321)
T 3p7i_A 13 EKALNFGII--STESQQNL-------------KPQWTPFLQDMEKKLGVK--VNAFFAP--------DYAGIIQGMRFNK 67 (321)
T ss_dssp -CCEEEEEC--CSSCHHHH-------------HHHHHHHHHHHHHHHTSC--EEEECCS--------SHHHHHHHHHTTS
T ss_pred CCcEEEEEe--cCCCHHHH-------------HHHHHHHHHHHHHHHCCC--EEEEecC--------CHHHHHHHHHcCC
Confidence 578999998 55555432 223457999999999975 4444432 7999999999999
Q ss_pred ccEEEe-ceeeecC--cceeeeccc-------cccccceEEEEEccCCCCCCcceeccccchhhHHHHHHHHHHHHHHHh
Q 037841 128 FDAAVG-DITILLN--RSNYVDFTL-------PYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVW 197 (561)
Q Consensus 128 ~D~~vg-~~~it~~--R~~~vdfT~-------p~~~~~~~ivvp~~~~~~~~~~~fl~PF~~~vW~~~~~~~i~~~~v~~ 197 (561)
+|+++. ....+.. |.....|.. |++ ..+++|++..
T Consensus 68 vDia~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~y--~~~lvv~~ds--------------------------------- 112 (321)
T 3p7i_A 68 VDIAWYGNLSAMEAVDRANGQVFAQTVAADGSPGY--WSVLIVNKDS--------------------------------- 112 (321)
T ss_dssp CSEEECCHHHHHHHHHHSCEEEEEEEEETTCCSSB--CEEEEEETTC---------------------------------
T ss_pred CcEEEEChHHHHHHHHhcCCEEEEEEeccCCCcce--EEEEEEECCC---------------------------------
Confidence 999974 3444432 223333433 332 2366666443
Q ss_pred hhhcccCCCCCCCccCccchhHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHhHhhheeeeEeeccCCCcCCH
Q 037841 198 ALEHRVNEDFRGPARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWYFVVLVLTQSYTASLTSLLTVQQLQPTITDV 277 (561)
Q Consensus 198 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~Ril~~~w~~~~lil~~~Yta~LtS~Lt~~~~~~~I~sl 277 (561)
+|+++
T Consensus 113 ---------------------------------------------------------------------------~i~sl 117 (321)
T 3p7i_A 113 ---------------------------------------------------------------------------PINNL 117 (321)
T ss_dssp ---------------------------------------------------------------------------SCCSH
T ss_pred ---------------------------------------------------------------------------CCCCH
Confidence 27999
Q ss_pred HHHHh--CCCeeEE-EeCch----HHHH-H-HhcCCCcc--ceeecCChHHHHHHhhccccCCceeEEeecchhHHHHHh
Q 037841 278 KMLIK--RGDNVGY-QKGSF----VLGI-L-KQLGFDER--KLVVYNSPEECHELFQKGSANGGIAAAFEEIPYGKLLVG 346 (561)
Q Consensus 278 ~dL~~--~~~~vg~-~~gs~----~~~~-l-~~~~~~~~--~~~~~~s~~~~~~~l~~g~~~~gv~a~i~~~~~~~~~l~ 346 (561)
+||++ +|+++++ ..|+. .... | ++.+.+.. +.+.+.+..+.+.+|..|+ +|+++.+...+..+.+
T Consensus 118 ~DL~~~~kgk~va~~~~gsts~~l~~~~~l~~~~Gi~~~~~~~v~~~~~~~a~~al~~G~----vDa~~~~~~~~~~~~~ 193 (321)
T 3p7i_A 118 NDLLAKRKDLTFGNGDPNSTSGFLVPGYYVFAKNNISASDFKRTVNAGHETNALAVANKQ----VDVATNNTENLDKLKT 193 (321)
T ss_dssp HHHHHTGGGCEEEECCTTCTTTTHHHHHHTTGGGTCCGGGSSEEEECCHHHHHHHHHTTS----SSEEEEEHHHHHTHHH
T ss_pred HHHHhhcCCCEEEeCCCCccHHHHHHHHHHHHHcCCChhHceeeecCCHHHHHHHHHCCC----ceEEEechHHHHHHHH
Confidence 99953 3568886 33332 2222 3 44555432 2345667788999999999 9999999888888776
Q ss_pred cC---CcceEEeCcccccCceEEEecCCCC--ChhhHHHHHhhccccchhHHHHHHH
Q 037841 347 QH---CYKYTMVEPTFKTAGFGFAFPLHSP--LVHDVSKAILSVTEGDKMKEIEDAW 398 (561)
Q Consensus 347 ~~---~~~l~~v~~~~~~~~~~~~~~k~sp--l~~~in~~Il~l~e~G~~~~i~~kw 398 (561)
+. ..++.++........++++++++-| +++.|+++|.++.++|..+++.+++
T Consensus 194 ~~p~~~~~lrvl~~s~~~p~~~i~~~k~~~~~l~~~l~~aL~~~~~d~~~~~~l~~~ 250 (321)
T 3p7i_A 194 SAPEKLKELKVIWKSPLIPGDPIVWRKNLSETTKDKIYDFFMNYGKTPEEKAVLERL 250 (321)
T ss_dssp HCHHHHTTEEEEEECSCBCCCEEEEETTSCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred hCcchhccEEEEEEcCCCCCCceeeeCCCCHHHHHHHHHHHHhcCCCHHHHHHHHhc
Confidence 54 2347777544444456899999944 9999999999999999888887765
No 40
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1
Probab=98.73 E-value=2.9e-08 Score=94.91 Aligned_cols=180 Identities=9% Similarity=0.000 Sum_probs=133.0
Q ss_pred eEEEehHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCcccEEEeceeeecC------cceeeeccccc
Q 037841 78 SVTGFCIDVFKAVIQELPYAVAYDFVPYGQPDGTSSGSYNDLIYQVFLGEFDAAVGDITILLN------RSNYVDFTLPY 151 (561)
Q Consensus 78 ~~~G~~idl~~~i~~~l~f~v~~~~v~~~~~~g~~ngs~~~li~~l~~g~~D~~vg~~~it~~------R~~~vdfT~p~ 151 (561)
++.|+.--|.+.+. |+. +++.... .+++.+..|.+|++|+++.+...+++ |...+||+.||
T Consensus 29 ~yeGlatgl~~~f~---gi~--~~i~~mr--------g~~~RI~aL~~gk~D~aI~S~~aa~e~~~~~~r~~~vdFg~~y 95 (231)
T 2ozz_A 29 LYEGLASGLKAQFD---GIP--FYYAHMR--------GADIRVECLLNGVYDMAVVSRLAAESYLSQNNLCIALELGPHT 95 (231)
T ss_dssp HHHHHHHHHHHTTT---TSC--EEEEECS--------CHHHHHHHHHTTSCSEEEEEHHHHHHHHHHSCEEEEEECCTTS
T ss_pred hhhHHHHHHHHHhc---CCc--EEEEEcc--------ChHHHHHHHHcCCCCEEEEecccchhhhcccCeEEEEEcCCCc
Confidence 78888888888884 654 4444431 69999999999999999999999999 99999999999
Q ss_pred cccceEEEEEccCCCCCCcceeccccchhhHHHHHHHHHHHHHHHhhhhcccCCCCCCCccCccchhHHHHHHHhhhccc
Q 037841 152 TESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWALEHRVNEDFRGPARHQVGTSFWFSFSTMVFSQR 231 (561)
Q Consensus 152 ~~~~~~ivvp~~~~~~~~~~~fl~PF~~~vW~~~~~~~i~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 231 (561)
+.+...++++.++...
T Consensus 96 Yv~~h~li~~~~~~~~---------------------------------------------------------------- 111 (231)
T 2ozz_A 96 YVGEHQLICRKGESGN---------------------------------------------------------------- 111 (231)
T ss_dssp SSCCEEEEEETTCGGG----------------------------------------------------------------
T ss_pred cccCeEEEEeCCCccc----------------------------------------------------------------
Confidence 9888888888664221
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHhHhhheeeeEeeccCCCcCCHHHHHhCCCeeEEEeCchHHHHHHhcCCCccceee
Q 037841 232 ERVISNLARFVVIVWYFVVLVLTQSYTASLTSLLTVQQLQPTITDVKMLIKRGDNVGYQKGSFVLGILKQLGFDERKLVV 311 (561)
Q Consensus 232 ~~~~s~~~Ril~~~w~~~~lil~~~Yta~LtS~Lt~~~~~~~I~sl~dL~~~~~~vg~~~gs~~~~~l~~~~~~~~~~~~ 311 (561)
| ++||+..||..+..+.+..+....+..
T Consensus 112 ------------------------------------------i----------krVGvd~gS~dq~~lt~~~~~g~~Ve~ 139 (231)
T 2ozz_A 112 ------------------------------------------V----------KRVGLDSRSADQKIMTDVFFGDSDVER 139 (231)
T ss_dssp ------------------------------------------C----------CEEEECTTCHHHHHHHHHHHTTSCCEE
T ss_pred ------------------------------------------c----------EEEEecCCChhHHHHHhhhcCCCeEEE
Confidence 2 689999999998888774344445667
Q ss_pred c-CChHHHHHHhhccccCCceeEEee--cchhHHHHHhcCCcceE--EeCc---ccccCceEEEecCCCC-ChhhHHHHH
Q 037841 312 Y-NSPEECHELFQKGSANGGIAAAFE--EIPYGKLLVGQHCYKYT--MVEP---TFKTAGFGFAFPLHSP-LVHDVSKAI 382 (561)
Q Consensus 312 ~-~s~~~~~~~l~~g~~~~gv~a~i~--~~~~~~~~l~~~~~~l~--~v~~---~~~~~~~~~~~~k~sp-l~~~in~~I 382 (561)
+ .+..+++.+|.+|+ +||++. +.+... ++.+ +. -+.. ........++++||.+ +.+.+|++|
T Consensus 140 ve~~y~~~i~~L~~G~----IDA~Iwn~d~~~a~----~~~~-l~~~~l~~~~~~~~~~eavI~v~k~n~~L~~~ln~~I 210 (231)
T 2ozz_A 140 VDLSYHESLQRIVKGD----VDAVIWNVVAENEL----TMLG-LEATPLTDDPRFLQATEAVVLTRVDDYPMQQLLRAVV 210 (231)
T ss_dssp EECCHHHHHHHHHHTS----CCEEEEEC-CHHHH----HHTT-EEEEECCSCHHHHHTTCEEEEEETTCHHHHHHHHHHC
T ss_pred EECCHHHHHHHHHcCC----ccEEEEcCcchhhh----cCCC-cceeccccccccccCCceEEEEECCCHHHHHHHHHHh
Confidence 7 78899999999999 999999 666555 2221 22 2222 2344566789999965 777787776
Q ss_pred hhccccchhHHHHHHHc
Q 037841 383 LSVTEGDKMKEIEDAWF 399 (561)
Q Consensus 383 l~l~e~G~~~~i~~kw~ 399 (561)
. ...+..+.++-.
T Consensus 211 ~----~~~v~~~Q~~V~ 223 (231)
T 2ozz_A 211 D----KHALLAHQQRVV 223 (231)
T ss_dssp C----HHHHHHHHHHHH
T ss_pred H----HHHHHHHHHHHH
Confidence 3 334555666554
No 41
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli}
Probab=98.18 E-value=2.1e-05 Score=78.54 Aligned_cols=118 Identities=19% Similarity=0.253 Sum_probs=73.0
Q ss_pred cCCHHHHHhCCCeeEEEeCchHHHH----HHhcCCCcccee-ecCChHHHHHHhhccccCCceeEEeecchhHHHHHhcC
Q 037841 274 ITDVKMLIKRGDNVGYQKGSFVLGI----LKQLGFDERKLV-VYNSPEECHELFQKGSANGGIAAAFEEIPYGKLLVGQH 348 (561)
Q Consensus 274 I~sl~dL~~~~~~vg~~~gs~~~~~----l~~~~~~~~~~~-~~~s~~~~~~~l~~g~~~~gv~a~i~~~~~~~~~l~~~ 348 (561)
|++++|| .|++|++..|+..+.. +++.+.+...+. .+.+..+...+|..|+ +||++...++......+.
T Consensus 97 i~s~~dL--~Gk~i~~~~gs~~~~~l~~~l~~~Gl~~~~v~~~~~~~~~~~~al~~G~----vDa~~~~~~~~~~~~~~~ 170 (308)
T 2x26_A 97 IKTVADL--KGHKVAFQKGSSSHNLLLRALRQAGLKFTDIQPTYLTPADARAAFQQGN----VDAWAIWDPYYSAALLQG 170 (308)
T ss_dssp CCSGGGG--TTSEEEECTTSHHHHHHHHHHHHTTCCGGGSEEEECCHHHHHHHHHTTS----SSEEEEETTHHHHHHHHS
T ss_pred CCCHHHc--CCCEEeeeCCCcHHHHHHHHHHHcCCCHHHeEEEecChHHHHHHHHcCC----CCEEEecchhHHHHHhcC
Confidence 6899999 6999999777765543 445565533332 3456788999999999 999998888877766553
Q ss_pred CcceEEeCc--ccccCceEEEec----CCCC-ChhhHHHHHhh----ccccc-hhHHHHHHHc
Q 037841 349 CYKYTMVEP--TFKTAGFGFAFP----LHSP-LVHDVSKAILS----VTEGD-KMKEIEDAWF 399 (561)
Q Consensus 349 ~~~l~~v~~--~~~~~~~~~~~~----k~sp-l~~~in~~Il~----l~e~G-~~~~i~~kw~ 399 (561)
. +.++.. .+......+++. +..| +...|.+++.+ +.+++ ...++..+|+
T Consensus 171 ~--~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~al~~a~~~~~~~~~~~~~~~~~~~ 231 (308)
T 2x26_A 171 G--VRVLKDGTDLNQTGSFYLAARPYAEKNGAFIQGVLATFSEADALTRSQREQSIALLAKTM 231 (308)
T ss_dssp S--EEEEEESTTSCCCCEEEEEEHHHHHHTHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred C--cEEEecCCCcCCcceEEEEcHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHh
Confidence 2 333322 222222233433 2344 77777777765 33333 3455556665
No 42
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=98.14 E-value=4.9e-05 Score=76.60 Aligned_cols=91 Identities=21% Similarity=0.227 Sum_probs=59.4
Q ss_pred cCCHHHHHhCCCeeEEEeCchHH----HHHHhcCCCccc--eeecCChHHHHHHhhccccCCceeEEeecchhHHHHHhc
Q 037841 274 ITDVKMLIKRGDNVGYQKGSFVL----GILKQLGFDERK--LVVYNSPEECHELFQKGSANGGIAAAFEEIPYGKLLVGQ 347 (561)
Q Consensus 274 I~sl~dL~~~~~~vg~~~gs~~~----~~l~~~~~~~~~--~~~~~s~~~~~~~l~~g~~~~gv~a~i~~~~~~~~~l~~ 347 (561)
|++++|| .|++|++..|+... .++++.+.+... ++.+ +..+...+|..|+ +||++...++......+
T Consensus 123 I~s~~DL--kGk~i~v~~gs~~~~~~~~~l~~~Gl~~~~v~~v~~-~~~~~~~al~~G~----vDa~~~~~p~~~~~~~~ 195 (324)
T 3ksx_A 123 LRTVADL--KGKRIAFQKGSSAHNLLLRVLAKSGLSMRDITPLYL-SPANARAAFAAGQ----VDAWAIWDPWYSALTLD 195 (324)
T ss_dssp CCSGGGG--TTCEEEECTTSHHHHHHHHHHHHTTCCGGGSEEEEC-CHHHHHHHHHTTC----CSEEEEETTHHHHHHHT
T ss_pred CCCHHHh--CCCEEEecCCChHHHHHHHHHHHcCCCHHHeEEEeC-CHHHHHHHHHcCC----CCEEEEccHHHHHHHhc
Confidence 7999999 69999998777543 345555655433 3333 6788999999999 99998888887776655
Q ss_pred CCcceEEeCcccccCceEEEecCC
Q 037841 348 HCYKYTMVEPTFKTAGFGFAFPLH 371 (561)
Q Consensus 348 ~~~~l~~v~~~~~~~~~~~~~~k~ 371 (561)
...++......+......++++++
T Consensus 196 ~~~~~l~~~~~~~~~~~~~~~~~~ 219 (324)
T 3ksx_A 196 GSARLLANGEGLGLTGGFFLSSRR 219 (324)
T ss_dssp TSEEEEEESTTSCCCCEEEEEEHH
T ss_pred CCcEEEecccccCCCccEEEECHH
Confidence 421222223333333445555554
No 43
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=98.03 E-value=3.3e-05 Score=78.79 Aligned_cols=104 Identities=16% Similarity=0.180 Sum_probs=62.5
Q ss_pred cCCHHHHHhCCCeeEEEeCchHH----HHHHhcCCCccceeecC-ChHHHHHHhhccccCCceeEEeecchhHHHHHhcC
Q 037841 274 ITDVKMLIKRGDNVGYQKGSFVL----GILKQLGFDERKLVVYN-SPEECHELFQKGSANGGIAAAFEEIPYGKLLVGQH 348 (561)
Q Consensus 274 I~sl~dL~~~~~~vg~~~gs~~~----~~l~~~~~~~~~~~~~~-s~~~~~~~l~~g~~~~gv~a~i~~~~~~~~~l~~~ 348 (561)
|++++|| .|++||+..|+... .+|++.+.+...+..+. +..+...+|..|+ +||++...+..... .+.
T Consensus 111 i~s~~DL--kGk~I~v~~gs~~~~~~~~~l~~~Gl~~~~v~~v~~~~~~~~~al~~G~----vDa~~~~~~~~~~~-~~g 183 (348)
T 3uif_A 111 AKSIKDL--KGKKIALHRGRPWELAFSNLLQSEGLTFKDFKIVNVNPQVGAAALASGT----VDGFFSLFDSYILE-DRG 183 (348)
T ss_dssp CCSGGGG--TTSEEEECTTSTHHHHHHHHHHHTTCCGGGSEEECCCHHHHHHHHHHTS----SSEEEESTTHHHHH-HTT
T ss_pred CCCHHHc--CCCEEEecCCChHHHHHHHHHHHcCCCHHHeEEEECCHHHHHHHHHcCC----CCEEEechHHHHHH-hcC
Confidence 7999999 69999998787653 44555565543333332 5678899999999 99998877665432 222
Q ss_pred CcceEEeCccc---ccCceEEEecCC----CC-ChhhHHHHHhh
Q 037841 349 CYKYTMVEPTF---KTAGFGFAFPLH----SP-LVHDVSKAILS 384 (561)
Q Consensus 349 ~~~l~~v~~~~---~~~~~~~~~~k~----sp-l~~~in~~Il~ 384 (561)
..........+ .....+++++++ .| +...+.+++.+
T Consensus 184 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~a~~~ 227 (348)
T 3uif_A 184 VGKIIWSTKTAPVDWKLMGGVWARNDFVKQNPEITQAIVTAYLK 227 (348)
T ss_dssp SEEEEEEGGGSCGGGSCCEEEEEEHHHHHHCHHHHHHHHHHHHH
T ss_pred CcEEEEeccccCCCCcceeEEEECHHHHHHCHHHHHHHHHHHHH
Confidence 21121112212 123346777765 44 55555555443
No 44
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}
Probab=97.85 E-value=4.9e-05 Score=77.28 Aligned_cols=121 Identities=16% Similarity=0.077 Sum_probs=76.8
Q ss_pred cCCHHHHHhCCCeeEEEeCchHH-----HHHHhcCCCc--cceeecCChHHHHHHhhccccCCceeEEeecchhHHHHHh
Q 037841 274 ITDVKMLIKRGDNVGYQKGSFVL-----GILKQLGFDE--RKLVVYNSPEECHELFQKGSANGGIAAAFEEIPYGKLLVG 346 (561)
Q Consensus 274 I~sl~dL~~~~~~vg~~~gs~~~-----~~l~~~~~~~--~~~~~~~s~~~~~~~l~~g~~~~gv~a~i~~~~~~~~~l~ 346 (561)
|++++||. .|++||+..++... .+|++.+.+. .+++.+ +..+...+|..|+ +||++...++......
T Consensus 145 I~s~~DL~-kGk~i~v~~~~s~~~~~~~~~l~~~Gl~~~dv~~~~~-~~~~~~~al~~G~----vDa~~~~~p~~~~~~~ 218 (341)
T 3un6_A 145 LNEFNNNG-DDYHFGIPHRYSTHYLLLEELRKQLKIKPGHFSYHEM-SPAEMPAALSEHR----ITGYSVAEPFGALGEK 218 (341)
T ss_dssp GGGCCSSS-SCEEEEESCSSSHHHHHHHHHHHHTTCCTTSEEEEEC-CGGGHHHHHHTTS----CSEEEEETTHHHHHHH
T ss_pred CCCHHHhC-CCCEEEECCCCCHHHHHHHHHHHHcCCCHHHeEEEEc-ChHHHHHHHHcCC----CCEEEecCCHHHHHHh
Confidence 78889983 48899998754433 2455556543 344455 5678889999999 9999998888777666
Q ss_pred cCCcceEEeCccc-ccC-ceEEEecCC----CC-----ChhhHHHHHhhccccchhHHHHHHHcc
Q 037841 347 QHCYKYTMVEPTF-KTA-GFGFAFPLH----SP-----LVHDVSKAILSVTEGDKMKEIEDAWFK 400 (561)
Q Consensus 347 ~~~~~l~~v~~~~-~~~-~~~~~~~k~----sp-----l~~~in~~Il~l~e~G~~~~i~~kw~~ 400 (561)
+...........+ ... ..+++++++ .| +...+++++..+.+++.-.++..+|++
T Consensus 219 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~a~~~a~~~~~~~~~~~~~~~~~~~ 283 (341)
T 3un6_A 219 LGKGKTLKHGDDVIPDAYCCVLVLRGELLDQHKDVAQAFVQDYKKSGFKMNDRKQSVDIMTHHFK 283 (341)
T ss_dssp SSCCEEEEEGGGTSTTCCCEEEEECHHHHHHCHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHSS
T ss_pred cCCeEEEEeccccCCCCceEEEEECHHHHHHCHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhC
Confidence 5432222222222 222 245666654 44 566677777777777643366667763
No 45
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica}
Probab=97.83 E-value=0.00018 Score=72.53 Aligned_cols=136 Identities=15% Similarity=0.160 Sum_probs=97.7
Q ss_pred HHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCcccEEEeceeee----cCcceeeeccccccccceEEEEEccCCC
Q 037841 91 IQELPYAVAYDFVPYGQPDGTSSGSYNDLIYQVFLGEFDAAVGDITIL----LNRSNYVDFTLPYTESGVSMIVPIKDSK 166 (561)
Q Consensus 91 ~~~l~f~v~~~~v~~~~~~g~~ngs~~~li~~l~~g~~D~~vg~~~it----~~R~~~vdfT~p~~~~~~~ivvp~~~~~ 166 (561)
.+..|+ +++++.+. ++.+++.+|.+|++|+++++.... .++.....+..++...+..+++++....
T Consensus 59 ~~~~g~--~v~~~~~~--------~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 128 (346)
T 3qsl_A 59 FKDEGL--DVSIADFA--------GGSKALQAVVGGSADVVSGAFEHTLSLQAKGQFYRAFALQGRAPMIGVGVSKKNLP 128 (346)
T ss_dssp HHHTTC--EEEEEECS--------SHHHHHHHHHTTSCSEEEEETHHHHHHHHTTCCEEEEEESBSSCCEEEEEETTTCT
T ss_pred hHhhCC--eEEEEecC--------ChHHHHHHHHCCCCCEEccchHHHHHHHhCCCCeEEEEecccCCCcEEEEecCccc
Confidence 466786 45555543 689999999999999998765443 4555666677777666777888754311
Q ss_pred CCCcceeccccchhhHHHHHHHHHHHHHHHhhhhcccCCCCCCCccCccchhHHHHHHHhhhccccccccchhHHHHHHH
Q 037841 167 KRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWALEHRVNEDFRGPARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVW 246 (561)
Q Consensus 167 ~~~~~~fl~PF~~~vW~~~~~~~i~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~Ril~~~w 246 (561)
T Consensus 129 -------------------------------------------------------------------------------- 128 (346)
T 3qsl_A 129 -------------------------------------------------------------------------------- 128 (346)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHhHhhheeeeEeeccCCCcCCHHHHHhCCCeeEEE-eCchHH----HHHHhcCCC--ccceeecCChHHHH
Q 037841 247 YFVVLVLTQSYTASLTSLLTVQQLQPTITDVKMLIKRGDNVGYQ-KGSFVL----GILKQLGFD--ERKLVVYNSPEECH 319 (561)
Q Consensus 247 ~~~~lil~~~Yta~LtS~Lt~~~~~~~I~sl~dL~~~~~~vg~~-~gs~~~----~~l~~~~~~--~~~~~~~~s~~~~~ 319 (561)
+|++++|| .|++|++. .|+... .++++.+.+ ..+++.+....+..
T Consensus 129 --------------------------~i~s~~DL--~Gk~i~~~~~gs~~~~~~~~~l~~~G~~~~~v~~~~~~~~~~~~ 180 (346)
T 3qsl_A 129 --------------------------GYKGPADL--KGRKIGVTAPGSSTNMVVNFFLAKHGLKASDVSFIGVGAGAGAV 180 (346)
T ss_dssp --------------------------TCCSGGGG--TTCEEEESSTTSHHHHHHHHHHHHTTCCGGGSEEEECCSSHHHH
T ss_pred --------------------------CCCChHHc--CCCEEEECCCCcHHHHHHHHHHHHcCCCHHHeEEEecCCcHHHH
Confidence 27999999 69999997 566443 444555554 34566777778899
Q ss_pred HHhhccccCCceeEEeecchhHHHHHhcC
Q 037841 320 ELFQKGSANGGIAAAFEEIPYGKLLVGQH 348 (561)
Q Consensus 320 ~~l~~g~~~~gv~a~i~~~~~~~~~l~~~ 348 (561)
.+|..|+ +||++...++......+.
T Consensus 181 ~al~~G~----vDa~~~~~p~~~~~~~~g 205 (346)
T 3qsl_A 181 TALRSGQ----IDAISNTDPVVSMLETSG 205 (346)
T ss_dssp HHHHHTS----CSEEEEETTHHHHHHHTT
T ss_pred HHHHcCC----ccEEEecchhHHHHHhCC
Confidence 9999999 999999888876655544
No 46
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125}
Probab=97.66 E-value=0.00019 Score=71.36 Aligned_cols=76 Identities=13% Similarity=0.009 Sum_probs=52.9
Q ss_pred eEEEehHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCcccEEEec-eeeec---Ccceeeeccccccc
Q 037841 78 SVTGFCIDVFKAVIQELPYAVAYDFVPYGQPDGTSSGSYNDLIYQVFLGEFDAAVGD-ITILL---NRSNYVDFTLPYTE 153 (561)
Q Consensus 78 ~~~G~~idl~~~i~~~l~f~v~~~~v~~~~~~g~~ngs~~~li~~l~~g~~D~~vg~-~~it~---~R~~~vdfT~p~~~ 153 (561)
...|+.+.+-+-+.++.|+ +++++... ....++.+|.+|++|+++++ ..... +......+..++..
T Consensus 16 ~~~~~~va~~~g~~~~~Gl--~v~~~~~~--------~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 85 (302)
T 3ix1_A 16 VHTFLYVAIENGYFAEEGL--DVDIVFPT--------NPTDPIQLTASGAIPLALSYQPDVILARSKDLPVVSVASVVRS 85 (302)
T ss_dssp GGHHHHHHHHTTHHHHTTE--EEEEECCS--------STTHHHHHHHHTSCSEEEECHHHHHHHHHTTCCEEEEEEEECS
T ss_pred ccHHHHHHHHcChHHHcCC--cEEEecCC--------CCchHHHHHHCCCCCEEecCHHHHHHHHHCCCCEEEEEEEecc
Confidence 5568888888888899986 45555433 34589999999999999876 22222 33345556666666
Q ss_pred cceEEEEEcc
Q 037841 154 SGVSMIVPIK 163 (561)
Q Consensus 154 ~~~~ivvp~~ 163 (561)
.+..+++++.
T Consensus 86 ~~~~l~~~~~ 95 (302)
T 3ix1_A 86 PLNHVMFLAE 95 (302)
T ss_dssp CCEEEEEEGG
T ss_pred CCEEEEEECC
Confidence 7788888754
No 47
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I}
Probab=97.31 E-value=0.0034 Score=62.94 Aligned_cols=120 Identities=13% Similarity=0.142 Sum_probs=81.1
Q ss_pred cCCHHHHHh------CCCeeEEE-eCchHH----HHHHhcCCCccceeecCChHHHHHHhhccccCCceeEEeecchhHH
Q 037841 274 ITDVKMLIK------RGDNVGYQ-KGSFVL----GILKQLGFDERKLVVYNSPEECHELFQKGSANGGIAAAFEEIPYGK 342 (561)
Q Consensus 274 I~sl~dL~~------~~~~vg~~-~gs~~~----~~l~~~~~~~~~~~~~~s~~~~~~~l~~g~~~~gv~a~i~~~~~~~ 342 (561)
++|++||++ ....+|.. .|+..+ .+++..+.+. ..+.|....+.+.+|..|+ +|+++.......
T Consensus 123 ~~sl~dL~~~ak~~p~~~~~g~~g~Gs~~hl~~~~l~~~~Gi~~-~~Vpy~G~~~a~~aL~~G~----VD~~~~~~~~~~ 197 (312)
T 2f5x_A 123 PNNIKELAEYVKKNADKISLANAGIGAASHLCGTMLVEALGVNL-LTIPYKGTAPAMNDLLGKQ----VDLMCDQTTNTT 197 (312)
T ss_dssp CCSHHHHHHHHHHHGGGCEEEESSTTSHHHHHHHHHHHHHTCCC-EEEECSSHHHHHHHHHTTS----SCEEEEEHHHHH
T ss_pred CCCHHHHHHHHHhCCCceEEeCCCCCcHHHHHHHHHHHHHCCCe-EEeccCChHHHHHHHHcCC----ccEEEechHHHH
Confidence 799999975 23466664 245433 2334455543 4578999999999999999 999999877666
Q ss_pred HHHhcC-CcceEEeC--------c--cc---------ccCceEEEecCCCC--ChhhHHHHHhhccccchhHHHHHHH
Q 037841 343 LLVGQH-CYKYTMVE--------P--TF---------KTAGFGFAFPLHSP--LVHDVSKAILSVTEGDKMKEIEDAW 398 (561)
Q Consensus 343 ~~l~~~-~~~l~~v~--------~--~~---------~~~~~~~~~~k~sp--l~~~in~~Il~l~e~G~~~~i~~kw 398 (561)
.+++.. .+-+.+.. + .+ ....+++++|+|-| +++.+++++.++.+++.+++...++
T Consensus 198 ~~i~~g~lr~Lav~~~~r~~~~pdvPt~~E~G~~~~~~~~w~gl~ap~g~p~~vv~~l~~al~~~~~~p~~~~~~~~~ 275 (312)
T 2f5x_A 198 QQITSGKVKAYAVTSLKRVPTLPDLPTMDESGYKGFEVGIWHGMWAPKGTPKPVVDKLVKSLQAGLADPKFQERMKQL 275 (312)
T ss_dssp HHHHTTSSEEEEECSSSCCTTSTTSCBTTTTTCTTCCCEEEEEEEEETTCCHHHHHHHHHHHHHHHTCHHHHHHHHHT
T ss_pred HHHHcCCeEEEEEcCccchhhcCCCCCHhhcCCCCeeEEEEEEEEEcCCCCHHHHHHHHHHHHHHHcCHHHHHHHHHC
Confidence 655542 22122211 1 11 11235889999966 9999999999999999877766554
No 48
>2dvz_A BUGE, putative exported protein; periplamsic binding proteins, carboxylate binding, glutamate, transport protein; HET: GLU; 2.30A {Bordetella pertussis}
Probab=97.16 E-value=0.005 Score=61.70 Aligned_cols=120 Identities=18% Similarity=0.217 Sum_probs=81.1
Q ss_pred cCCHHHHHhC------CCeeEEE-eCchHH----HHHHhcCCCccceeecCChHHHHHHhhccccCCceeEEeecchhHH
Q 037841 274 ITDVKMLIKR------GDNVGYQ-KGSFVL----GILKQLGFDERKLVVYNSPEECHELFQKGSANGGIAAAFEEIPYGK 342 (561)
Q Consensus 274 I~sl~dL~~~------~~~vg~~-~gs~~~----~~l~~~~~~~~~~~~~~s~~~~~~~l~~g~~~~gv~a~i~~~~~~~ 342 (561)
++|++||+.. ...+|.. .|+..+ .+++..+.+. ..+.|....+.+.+|..|+ +|+++.......
T Consensus 127 ~~tl~dL~~~ak~~p~~~~~g~~g~Gs~~hl~~~~l~~~~Gi~~-~~Vpy~G~~~a~~al~~G~----vD~~~~~~~~~~ 201 (314)
T 2dvz_A 127 AKDFKGFLEELKKNPGKYSYGSSGTCGVLHLMGESFKMATGTDI-VHVPYKGSGPAVADAVGGQ----IELIFDNLPSSM 201 (314)
T ss_dssp CSSHHHHHHHHHTSTTTCEEEESCTTSHHHHHHHHHHHHHTCCC-EEEECSSHHHHHHHHHHTS----SSEEEEEHHHHH
T ss_pred CCCHHHHHHHHHhCCCcEEEeCCCCCcHHHHHHHHHHHHhCCCe-EEcccCCHHHHHHHHHcCC----ceEEEEcHHHHH
Confidence 7999999752 2366664 254432 2334455543 4578999999999999999 999999877666
Q ss_pred HHHhcC-CcceEEeCc----------cc---------ccCceEEEecCCCC--ChhhHHHHHhhccccchhHHHHHHH
Q 037841 343 LLVGQH-CYKYTMVEP----------TF---------KTAGFGFAFPLHSP--LVHDVSKAILSVTEGDKMKEIEDAW 398 (561)
Q Consensus 343 ~~l~~~-~~~l~~v~~----------~~---------~~~~~~~~~~k~sp--l~~~in~~Il~l~e~G~~~~i~~kw 398 (561)
.+++.. .+-+.+..+ .+ ....++++.|+|-| .++.+++++.++.+++.+++...++
T Consensus 202 ~~i~~g~lr~Lav~~~~r~~~~pdvPt~~e~G~~~~~~~~w~gl~ap~g~p~~vv~~l~~al~~~~~~p~~~~~~~~~ 279 (314)
T 2dvz_A 202 PQIQAGKLRAMAIAWPTRIDAIKDVPTFADAGFPVLNQPVWYGLLAPKGTPMDVVNKLRDAAVVALKDPKVIKALDDQ 279 (314)
T ss_dssp HHHHTTSSEEEEEESSSCCGGGTTSCBTTTTTCGGGCCCEEEEEEEETTCCHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHcCCEEEEEecCccccccCCCCCCHHhcCCCceEEeEEEEEEEcCCCCHHHHHHHHHHHHHHHcCHHHHHHHHHC
Confidence 555542 221222210 01 11236889999966 9999999999999999888776665
No 49
>2qpq_A Protein BUG27; alpha/beta domain, venus flytrap, transport protein; HET: CIT; 1.92A {Bordetella pertussis}
Probab=97.13 E-value=0.0063 Score=60.63 Aligned_cols=118 Identities=12% Similarity=0.040 Sum_probs=80.8
Q ss_pred cCCHHHHHhC------CCeeEEE-eCchHH----HHHHhcCCCccceeecCChHHHHHHhhccccCCceeEEeecchhHH
Q 037841 274 ITDVKMLIKR------GDNVGYQ-KGSFVL----GILKQLGFDERKLVVYNSPEECHELFQKGSANGGIAAAFEEIPYGK 342 (561)
Q Consensus 274 I~sl~dL~~~------~~~vg~~-~gs~~~----~~l~~~~~~~~~~~~~~s~~~~~~~l~~g~~~~gv~a~i~~~~~~~ 342 (561)
++|++||+.. ...+|.. .|+..+ .+++..+.+. ..+.|....+.+.+|..|+ +|+++.......
T Consensus 114 ~~sl~dL~~~ak~~p~~~~~g~~g~Gs~~hl~~~~l~~~~G~~~-~~Vpy~g~~~a~~al~~G~----vD~~~~~~~~~~ 188 (301)
T 2qpq_A 114 YKTLGELMAAAKQTNTQVTYGSCGNGTPQHLAGELLNVSAKTHM-VHVPYKGCGPALNDVLGSQ----IGLAVVTASSAI 188 (301)
T ss_dssp CCSHHHHHHHTCSSSCCCEEEESSTTSHHHHHHHHHHHHHTCCC-EEEECSSHHHHHHHHHTTS----SSCEEEEHHHHH
T ss_pred CCCHHHHHHHHHhCCCceEEecCCCCcHHHHHHHHHHHHhCCCe-EEeccCChHHHHHHHHCCC----ccEEEEcHHHHH
Confidence 7999999752 2356654 244433 2233455543 3578999999999999999 999998877665
Q ss_pred HHHhcCCcceEEe---Cc----------cc---------ccCceEEEecCCCC--ChhhHHHHHhhccccchhHHHHHHH
Q 037841 343 LLVGQHCYKYTMV---EP----------TF---------KTAGFGFAFPLHSP--LVHDVSKAILSVTEGDKMKEIEDAW 398 (561)
Q Consensus 343 ~~l~~~~~~l~~v---~~----------~~---------~~~~~~~~~~k~sp--l~~~in~~Il~l~e~G~~~~i~~kw 398 (561)
.+++.. + ++.+ .+ .+ ....++++.|+|-| ++..+++++.++.+++.+++..+++
T Consensus 189 ~~i~~g-~-lr~Lav~~~~r~~~~pdvPt~~e~G~~~~~~~~w~gl~ap~g~p~~vv~~l~~al~~~~~~~~~~~~~~~~ 266 (301)
T 2qpq_A 189 PFIKAG-K-LQALAVTSKERSALLPEVPTVAEQGVAGYELNQWHGLLVPGATPMAVRQKLYDGIAKVMQRDDVQKKLADL 266 (301)
T ss_dssp HHHHTT-S-EEEEEECSSSCCTTCTTSCBSGGGTCTTCCCEEEEEEEEETTCCHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHhcC-C-eEEEEEcCCccccccCCCCChHHhCCCceEEEeEEEEEecCCCCHHHHHHHHHHHHHHHcCHHHHHHHHHC
Confidence 555442 1 3332 11 01 12246889999966 9999999999999999888776665
No 50
>4ddd_A Immunogenic protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, immune system; 1.90A {Ehrlichia chaffeensis}
Probab=96.89 E-value=0.003 Score=63.77 Aligned_cols=59 Identities=19% Similarity=0.308 Sum_probs=43.6
Q ss_pred cCCHHHHHhCCCeeEEE-eCchH----HHHHHhcCCCcc--ceeecCChHHHHHHhhccccCCceeEEeecc
Q 037841 274 ITDVKMLIKRGDNVGYQ-KGSFV----LGILKQLGFDER--KLVVYNSPEECHELFQKGSANGGIAAAFEEI 338 (561)
Q Consensus 274 I~sl~dL~~~~~~vg~~-~gs~~----~~~l~~~~~~~~--~~~~~~s~~~~~~~l~~g~~~~gv~a~i~~~ 338 (561)
|++++|| .++++++. .|+.. +.+++..+.+.. ..+.|....+.+.+|..|+ +|+++...
T Consensus 138 i~sl~DL--~gk~v~~~~~Gs~~~~~~~~~l~~~Gi~~~~v~~v~~~g~~~a~~aL~~G~----vDa~~~~~ 203 (327)
T 4ddd_A 138 ISVIDDI--KGKRVNIGSPGTGVRVAMLKLLGEKGWTKKDFSVMAELKSSEQAQALCDNK----IDVMVDVI 203 (327)
T ss_dssp CCSGGGG--TTSEEECCSTTSHHHHHHHHHHHHHTCCGGGCSEEECCCHHHHHHHHHTTS----CSBEEEEE
T ss_pred CCCHHHh--CCCEEecCCCCccHHHHHHHHHHHcCCChHhcchhhcCCHHHHHHHHHcCC----CCEEEEcc
Confidence 7999999 58899884 45543 334455566543 3478889999999999999 99988754
No 51
>2x7q_A Ca3427, possible thiamine biosynthesis enzyme; unknown function; 2.00A {Candida albicans} PDB: 2x7p_A
Probab=96.52 E-value=0.0093 Score=59.68 Aligned_cols=105 Identities=18% Similarity=0.207 Sum_probs=60.8
Q ss_pred cCCHHHHHhCCCeeEEEe-CchHHH---HH-HhcCCCc-cceeecCChHHHHHHhhcc----ccCCceeEEeecchhHHH
Q 037841 274 ITDVKMLIKRGDNVGYQK-GSFVLG---IL-KQLGFDE-RKLVVYNSPEECHELFQKG----SANGGIAAAFEEIPYGKL 343 (561)
Q Consensus 274 I~sl~dL~~~~~~vg~~~-gs~~~~---~l-~~~~~~~-~~~~~~~s~~~~~~~l~~g----~~~~gv~a~i~~~~~~~~ 343 (561)
|++++|| ++||+.. |+.... .+ ++.+.+. .+++.+....+...+|..| + +||++.+......
T Consensus 112 i~s~~DL----K~i~~~~~gs~~~~~~~~l~~~~Gl~~dv~~v~~~~~~~~~~al~~G~~~~~----vDa~~~ep~~~~~ 183 (321)
T 2x7q_A 112 VTDAKQL----KRIGVSRIGSGSYVMSFVLAHQLGVPSFDQFQVLSNFKNLRDSVNLKDGVEG----SDAFMWEYFTSKK 183 (321)
T ss_dssp CSSGGGC----CEEEESSTTSHHHHHHHHHHHHHTSCCCCEEEECCSHHHHHHHHTTCTTSCC----CSEEEEEHHHHHH
T ss_pred CCChHHc----ceEEeeCCCcHHHHHHHHHHHhcCCCcceEEEEcCChHHHHHHHHcCCCccc----eEEEEecCccchh
Confidence 7899999 6899975 554332 23 3455543 4667777888899999999 8 9998655433333
Q ss_pred HHhcCCcceEEeCcccccC-ceEEEecCC----CC-----ChhhHHHHHhhcccc
Q 037841 344 LVGQHCYKYTMVEPTFKTA-GFGFAFPLH----SP-----LVHDVSKAILSVTEG 388 (561)
Q Consensus 344 ~l~~~~~~l~~v~~~~~~~-~~~~~~~k~----sp-----l~~~in~~Il~l~e~ 388 (561)
... .. .+..+.+..... ..+++++++ .| +...+.+++..+.++
T Consensus 184 ~~~-~g-~~~~~~d~~~~~~~~~l~~~~~~~~~~p~~v~~~~~a~~~a~~~~~~~ 236 (321)
T 2x7q_A 184 YYD-NH-EIKQIDQIYTPWSSWVVATSSDSLQAKSDVIKNFIDAVNQGIQYYNEH 236 (321)
T ss_dssp HHH-TT-SEEEEEEEECSSCSEEEEEEHHHHHHSHHHHHHHHHHHHHHHHHHHHC
T ss_pred hcc-CC-ceEEccccCCCCceEEEEEcHHHHhhCHHHHHHHHHHHHHHHHHHHHC
Confidence 222 22 244444332222 236666654 34 344445555455443
No 52
>1zbm_A Hypothetical protein AF1704; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.30A {Archaeoglobus fulgidus} SCOP: c.94.1.1
Probab=96.50 E-value=0.0052 Score=60.06 Aligned_cols=102 Identities=9% Similarity=-0.133 Sum_probs=57.1
Q ss_pred HHHHhCCCeeEEE-eCchHHHHHHhcCCCccceeecCChHHHHHHhhccccCCceeEEeecc-hhHHHHHhcCCcceEEe
Q 037841 278 KMLIKRGDNVGYQ-KGSFVLGILKQLGFDERKLVVYNSPEECHELFQKGSANGGIAAAFEEI-PYGKLLVGQHCYKYTMV 355 (561)
Q Consensus 278 ~dL~~~~~~vg~~-~gs~~~~~l~~~~~~~~~~~~~~s~~~~~~~l~~g~~~~gv~a~i~~~-~~~~~~l~~~~~~l~~v 355 (561)
+|| +|++||+. .++....+++.. ....+++ +.+..+...+|..|+ +||++... +... +.+.....+.-.
T Consensus 99 ~DL--kGK~Iav~~~~s~~~~ll~~~-l~~~~~~-~~~~~~~~~al~~G~----vDa~~~~~~~~~~-~~~~g~~~~~~~ 169 (280)
T 1zbm_A 99 ISL--DGKRIAVPGRYTTANLLLKLA-VEDFEPV-EMPFDRIIQAVLDEE----VDAGLLIHEGQIT-YADYGLKCVLDL 169 (280)
T ss_dssp CCC--TTCEEEESCTTSHHHHHHHHH-CSSCEEE-ECCGGGHHHHHHTTS----SSEEEECSGGGGT-GGGGTCEEEEEH
T ss_pred hhc--CCCEEEecCCCcHHHHHHHHH-hccCceE-ecCHHHHHHHHHcCC----CCEEEEechHHhH-HHhcCCeEeccH
Confidence 567 69999996 444444445542 2223443 446678999999999 99987543 4433 222222111111
Q ss_pred Ccc------cccCceEEEecCC-CC-ChhhHHHHHhhcccc
Q 037841 356 EPT------FKTAGFGFAFPLH-SP-LVHDVSKAILSVTEG 388 (561)
Q Consensus 356 ~~~------~~~~~~~~~~~k~-sp-l~~~in~~Il~l~e~ 388 (561)
++. ......+++++++ .| ++..|.+++.+..+.
T Consensus 170 ~~~~~~~~g~~~~~~~~~~~~~~~p~~v~~~~~a~~~a~~~ 210 (280)
T 1zbm_A 170 WDWWSEQVKLPLPLGLNAIRRDLSVEVQEEFLRAMRESIAF 210 (280)
T ss_dssp HHHHHTTCSSCEEEEEEEEETTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhCCCCCeeEEEEcccCCHHHHHHHHHHHHHHHHH
Confidence 111 1111236788888 56 777777777665543
No 53
>4ab5_A Transcriptional regulator, LYSR family; transcription factors; 2.51A {Neisseria meningitidis serogroup B} PDB: 4ab6_A
Probab=96.43 E-value=0.023 Score=52.26 Aligned_cols=85 Identities=18% Similarity=0.106 Sum_probs=58.3
Q ss_pred CceEEEEecCCCCCcceEEEeeCCCCCCCceEEEehHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCc
Q 037841 48 EKKLRIGVPVKKGFSYFVNVTIDPKTQEPTSVTGFCIDVFKAVIQELPYAVAYDFVPYGQPDGTSSGSYNDLIYQVFLGE 127 (561)
Q Consensus 48 g~~LrVgv~~~~~~~pf~~~~~d~~~~~~~~~~G~~idl~~~i~~~l~f~v~~~~v~~~~~~g~~ngs~~~li~~l~~g~ 127 (561)
.+.||||+. +.+ ...+-.+++..+.++.+ .+++++.. ++..+++.+|.+|+
T Consensus 7 ~g~l~Ig~~--~~~-----------------~~~~l~~~l~~f~~~~P-~i~i~i~~---------~~~~~~~~~l~~g~ 57 (222)
T 4ab5_A 7 AGELRIAVE--CHT-----------------CFDWLMPAMGEFRPMWP-QVELDIVS---------GFQADPVGLLLQHR 57 (222)
T ss_dssp TEEEEEECC--CTT-----------------THHHHHHHHHHHHHHST-TEEEEEEC---------CCCSCTHHHHHTTS
T ss_pred cceEEEEEe--hHH-----------------HHHHHHHHHHHHHHHCC-CcEEEEec---------CCHHHHHHHHHcCC
Confidence 467999997 332 12355678999999987 46777665 34567899999999
Q ss_pred ccEEEeceeeecCcceeeeccccccccceEEEEEccCC
Q 037841 128 FDAAVGDITILLNRSNYVDFTLPYTESGVSMIVPIKDS 165 (561)
Q Consensus 128 ~D~~vg~~~it~~R~~~vdfT~p~~~~~~~ivvp~~~~ 165 (561)
+|+++...... ...+ -..++....++++++...+
T Consensus 58 ~Di~i~~~~~~---~~~~-~~~~l~~~~~~~v~~~~~p 91 (222)
T 4ab5_A 58 ADLAIVSEAEK---QNGI-SFQPLFAYEMVGICAPDHP 91 (222)
T ss_dssp CSEEEESCCCC---CTTE-EEEEEEEEEEEEEECTTSG
T ss_pred cCEEEecCCCC---cCCe-EEEEeecCcEEEEecCCCh
Confidence 99998743322 1222 2467778889999986643
No 54
>3ho7_A OXYR; beta-alpha-barrels, DNA-binding, transcription, transcriptio regulation; 1.58A {Porphyromonas gingivalis}
Probab=96.09 E-value=0.068 Score=49.46 Aligned_cols=84 Identities=14% Similarity=0.014 Sum_probs=60.1
Q ss_pred CceEEEEecCCCCCcceEEEeeCCCCCCCceEEEehHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCc
Q 037841 48 EKKLRIGVPVKKGFSYFVNVTIDPKTQEPTSVTGFCIDVFKAVIQELPYAVAYDFVPYGQPDGTSSGSYNDLIYQVFLGE 127 (561)
Q Consensus 48 g~~LrVgv~~~~~~~pf~~~~~d~~~~~~~~~~G~~idl~~~i~~~l~f~v~~~~v~~~~~~g~~ngs~~~li~~l~~g~ 127 (561)
.+.|+||+. +.+ ...+-.+++..+.++.+ .+++++.. ++..+++.+|.+|+
T Consensus 10 ~g~l~Ig~~--~~~-----------------~~~~l~~~l~~~~~~~P-~v~i~~~~---------~~~~~~~~~l~~g~ 60 (232)
T 3ho7_A 10 TGRLNIAVL--PTI-----------------APYLLPRVFPIWKKELA-GLEIHVSE---------MQTSRCLASLLSGE 60 (232)
T ss_dssp CEEEEEEEC--TTT-----------------HHHHHHHHHHHHHHHST-TEEEEEEE---------CCHHHHHHHHHHTS
T ss_pred ceeEEEEec--ccc-----------------chhhhHHHHHHHHHHCC-CcEEEEEe---------CCHHHHHHHHHcCC
Confidence 467999997 332 12356688999999988 46777765 46789999999999
Q ss_pred ccEEEeceeeecCcceeeeccccccccceEEEEEccC
Q 037841 128 FDAAVGDITILLNRSNYVDFTLPYTESGVSMIVPIKD 164 (561)
Q Consensus 128 ~D~~vg~~~it~~R~~~vdfT~p~~~~~~~ivvp~~~ 164 (561)
+|+++....... ..+ -..++....++++++...
T Consensus 61 ~Dl~i~~~~~~~---~~l-~~~~l~~~~~~~v~~~~h 93 (232)
T 3ho7_A 61 IDMAIIASKAET---EGL-EDDLLYYEEFLGYVSRCE 93 (232)
T ss_dssp CSEEEESSCCCC---TTE-EEEEEEEEEEEEEECTTS
T ss_pred CCEEEEcCCCCC---CCe-EEEEecccCEEEEEcCCC
Confidence 999987543322 222 246777888999998654
No 55
>2zzv_A ABC transporter, solute-binding protein; periplasmic substrate binding protein, calcium, lactate, trap transporter, transport protein; 1.40A {Thermus thermophilus} PDB: 2zzw_A 2zzx_A
Probab=96.01 E-value=0.084 Score=53.76 Aligned_cols=60 Identities=18% Similarity=0.217 Sum_probs=46.6
Q ss_pred CCCcCCHHHHHhCCCeeEEEeCchHHHHHHhcCCCccceeecCChHHHHHHhhccccCCceeEEeecchhH
Q 037841 271 QPTITDVKMLIKRGDNVGYQKGSFVLGILKQLGFDERKLVVYNSPEECHELFQKGSANGGIAAAFEEIPYG 341 (561)
Q Consensus 271 ~~~I~sl~dL~~~~~~vg~~~gs~~~~~l~~~~~~~~~~~~~~s~~~~~~~l~~g~~~~gv~a~i~~~~~~ 341 (561)
..+|++++|| +|++|.+. +......++.+|.. .+.+ ...|...+|++|. +|+.....+..
T Consensus 163 ~~pI~s~~DL--kG~kirv~-~~~~~~~~~~lGa~---pv~~-~~~e~~~ALq~G~----VDg~~~~~~~~ 222 (361)
T 2zzv_A 163 KKPIRRFEDF--KGVKLRVP-GGMIAEVFAAAGAS---TVLL-PGGEVYPALERGV----IDAADFVGPAV 222 (361)
T ss_dssp SSCCCSGGGG--TTCEEECC-SHHHHHHHHHTTCE---EECC-CGGGHHHHHHTTS----CSEEECSCHHH
T ss_pred CCCcCChHHh--CCCEEeec-CHHHHHHHHHcCCe---eeec-ChHHHHHHHHcCC----cceeecCCcch
Confidence 3579999999 79999987 55666778887652 3333 5678899999999 99998777665
No 56
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=95.92 E-value=0.0064 Score=50.21 Aligned_cols=77 Identities=14% Similarity=0.048 Sum_probs=60.7
Q ss_pred HHHHHHHHHhhhhcccCCCCCCCccCccchhHHHHHHHhhhcc-cc-ccccchhHHHHHHHHHHHHHHHHHhHhhheeee
Q 037841 188 FFIFIGFVVWALEHRVNEDFRGPARHQVGTSFWFSFSTMVFSQ-RE-RVISNLARFVVIVWYFVVLVLTQSYTASLTSLL 265 (561)
Q Consensus 188 ~~i~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~-~~~s~~~Ril~~~w~~~~lil~~~Yta~LtS~L 265 (561)
.+++.+.+++.+|+..+ +....++.+++|+++.++.-.| ++ .|.+..+|++.++|.++++.+.+...+.+++.+
T Consensus 18 ~~~~~a~~~~~~E~~~~----~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~~~~~~i~~~~ 93 (103)
T 2k1e_A 18 VLEEASKKAVEAERGAP----GAALISYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTAALATDF 93 (103)
T ss_dssp HHHHHHHHHHHHHTTST----TCCCCCGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHHHHHHHHTHHHHHTTG
T ss_pred HHHHHHHhhhhhccCCC----CcccccHHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445666777776542 2344578999999999999777 43 578899999999999999999999999999887
Q ss_pred Eee
Q 037841 266 TVQ 268 (561)
Q Consensus 266 t~~ 268 (561)
+..
T Consensus 94 ~~~ 96 (103)
T 2k1e_A 94 VRR 96 (103)
T ss_dssp GGH
T ss_pred HHH
Confidence 653
No 57
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=95.90 E-value=0.017 Score=49.16 Aligned_cols=74 Identities=14% Similarity=0.158 Sum_probs=59.2
Q ss_pred HHHHHHHhhhhcccCCCCCCCccCccchhHHHHHHHhhhcc-cc-ccccchhHHHHHHHHHHHHHHHHHhHhhheeeeEe
Q 037841 190 IFIGFVVWALEHRVNEDFRGPARHQVGTSFWFSFSTMVFSQ-RE-RVISNLARFVVIVWYFVVLVLTQSYTASLTSLLTV 267 (561)
Q Consensus 190 i~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~-~~~s~~~Ril~~~w~~~~lil~~~Yta~LtS~Lt~ 267 (561)
++.+.++|.+|+..+ ++...++.+++|+++.++.-.| ++ .|.+..+|++.++|.++++.+.+...+.+++.++.
T Consensus 41 ~~~a~~~~~~E~~~~----~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~ 116 (122)
T 2ih3_C 41 LAGSYLAVLAERGAP----GAQLITYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVG 116 (122)
T ss_dssp HHHHHHHHHHHTTST----TCCCCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhheeeecCC----CCccCccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777886432 2344679999999999999777 44 67899999999999999999999999999988754
No 58
>2g29_A Nitrate transport protein NRTA; solute-binding protein, alpha-beta protein; 1.50A {Synechocystis SP}
Probab=95.55 E-value=0.092 Score=54.57 Aligned_cols=103 Identities=15% Similarity=0.107 Sum_probs=63.8
Q ss_pred HHHHhCCCeeEEE-eCchHH----HHHHhcCCCc---cceeecCChHHHHHHhhccccCCceeEEeecchhHHHHHhcCC
Q 037841 278 KMLIKRGDNVGYQ-KGSFVL----GILKQLGFDE---RKLVVYNSPEECHELFQKGSANGGIAAAFEEIPYGKLLVGQHC 349 (561)
Q Consensus 278 ~dL~~~~~~vg~~-~gs~~~----~~l~~~~~~~---~~~~~~~s~~~~~~~l~~g~~~~gv~a~i~~~~~~~~~l~~~~ 349 (561)
+|| .|++||+. .++... .+|++.+.+. .+++.+ ...+...+|..|+ +||++...++......+..
T Consensus 151 ~dL--kGk~iav~~~gs~~~~~l~~~L~~~Gl~~~~dv~~v~~-~~~~~~~aL~~G~----vDa~~~~eP~~~~~~~~g~ 223 (417)
T 2g29_A 151 AKV--TDPKVAMTFPGGTHDMWIRYWLAAGGMEPGKDFSTIVV-PPAQMVANVKVNA----MESFCVGEPWPLQTVNQGV 223 (417)
T ss_dssp HTS--SSCEEEESSTTSHHHHHHHHHHHHTTCCBTTTBEEEEC-CGGGHHHHHHTTS----CSEEEEETTHHHHHHHHTS
T ss_pred Hhc--CCCEEEEeCCCCHHHHHHHHHHHHcCCCCCCceEEEEC-CHHHHHHHHHcCC----CCEEEeCCCHHHHHHHcCC
Confidence 677 58999997 466543 3444556543 355666 4578899999999 9999988888766665543
Q ss_pred cceEEe-CcccccCc-eEEEecCC----CC-----ChhhHHHHHhhccc
Q 037841 350 YKYTMV-EPTFKTAG-FGFAFPLH----SP-----LVHDVSKAILSVTE 387 (561)
Q Consensus 350 ~~l~~v-~~~~~~~~-~~~~~~k~----sp-----l~~~in~~Il~l~e 387 (561)
...... .+.....+ .+++++++ .| +...+.++...+.+
T Consensus 224 ~~~~~~~~~~~~~~p~~~l~~~~~~~~~~p~~~~~~~~A~~~A~~~~~~ 272 (417)
T 2g29_A 224 GYQALTTGQLWKDHPEKAFGMRADWVDQNPKAAKALLMAVMEAQQWCDQ 272 (417)
T ss_dssp CEEEEEGGGTBTTCBCEEEEEEHHHHHHCHHHHHHHHHHHHHHHHHHHC
T ss_pred CEEEEechhhcCCCceEEEEECHHHHHHCHHHHHHHHHHHHHHHHHHhC
Confidence 222222 33323223 56777764 44 44456666666665
No 59
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=95.51 E-value=0.043 Score=47.82 Aligned_cols=73 Identities=15% Similarity=0.128 Sum_probs=57.2
Q ss_pred HHHHHHhhhhcccCCCCCCCccCccchhHHHHHHHhhhcc-c-cccccchhHHHHHHHHHHHHHHHHHhHhhheeeeEe
Q 037841 191 FIGFVVWALEHRVNEDFRGPARHQVGTSFWFSFSTMVFSQ-R-ERVISNLARFVVIVWYFVVLVLTQSYTASLTSLLTV 267 (561)
Q Consensus 191 ~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~-~~~~s~~~Ril~~~w~~~~lil~~~Yta~LtS~Lt~ 267 (561)
+.+.+++.+++.. .++...++..++|+++.++.-.| + ..|.+..+|++.++|.++++.+.+...+.+++.+..
T Consensus 21 ~~a~~~~~~e~~~----~~~~~~~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~~~~ 95 (139)
T 3eff_K 21 AGSYLAVLAERGA----PGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVG 95 (139)
T ss_dssp HHHHHHHHTTSSC----TTCCCCCHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTTH
T ss_pred HHHHHHHHHhcCC----CCcccCCHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566666543 22344678899999999998776 3 467899999999999999999999999999988743
No 60
>2pfy_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.95A {Bordetella pertussis tohama I}
Probab=95.47 E-value=0.21 Score=49.38 Aligned_cols=100 Identities=14% Similarity=0.064 Sum_probs=59.8
Q ss_pred CCcCCHHHHHhCCCeeEEEeCchHHHHHHhcCCCccceeecCChHHHHHHhhccccCCceeEEeecchhHHHH-HhcCCc
Q 037841 272 PTITDVKMLIKRGDNVGYQKGSFVLGILKQLGFDERKLVVYNSPEECHELFQKGSANGGIAAAFEEIPYGKLL-VGQHCY 350 (561)
Q Consensus 272 ~~I~sl~dL~~~~~~vg~~~gs~~~~~l~~~~~~~~~~~~~~s~~~~~~~l~~g~~~~gv~a~i~~~~~~~~~-l~~~~~ 350 (561)
.+|++++|| +|.+|.+. ++.....++.+|. ..+.. ...|...+|++|. +|+........... +.+.++
T Consensus 129 ~pI~s~~Dl--kG~KiR~~-~~~~~~~~~~lGa---~pv~~-~~~E~y~ALq~G~----vDg~~~~~~~~~~~~~~ev~k 197 (301)
T 2pfy_A 129 KPVAALADL--KGTRFRAY-SASTSHMAALMGA---VPTTV-QTPEVPQAFSTGV----IDAMLTSPATGVDSQAWDYVK 197 (301)
T ss_dssp SCCSSGGGG--TTCEEEEC-SHHHHHHHHHTTS---EEEEC-CGGGHHHHHHTTS----CSBEEECHHHHHHTTGGGTCC
T ss_pred CCCCCHHHh--CCCEEeec-ChhHHHHHHHcCC---cceec-cHHHHHHHHhcce----eeeEecCccccccccHHHHhh
Confidence 579999999 79999886 6666677888774 22333 6778999999999 99985443322211 112244
Q ss_pred ceEEeCcccccCceEEEecCCCC--ChhhHHHHHhh
Q 037841 351 KYTMVEPTFKTAGFGFAFPLHSP--LVHDVSKAILS 384 (561)
Q Consensus 351 ~l~~v~~~~~~~~~~~~~~k~sp--l~~~in~~Il~ 384 (561)
+...... ......+++++..- |-+...++|..
T Consensus 198 -~~~~~~~-~~~~~~~~~n~~~~~~L~~~~q~~i~~ 231 (301)
T 2pfy_A 198 -YYYDAQA-FIPQSFVIANKRAFQRLPAEVRQAVLD 231 (301)
T ss_dssp -EEEECCC-CCCEEEEEEEHHHHHHSCHHHHHHHHH
T ss_pred -hhccccc-ccceeeEEEcHHHHhcCCHHHHHHHHH
Confidence 3233332 22334566666521 44444444443
No 61
>2pfz_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.80A {Bordetella pertussis tohama I}
Probab=95.37 E-value=0.18 Score=49.82 Aligned_cols=100 Identities=12% Similarity=0.001 Sum_probs=59.6
Q ss_pred CCcCCHHHHHhCCCeeEEEeCchHHHHHHhcCCCccceeecCChHHHHHHhhccccCCceeEEeecchhHHHH-HhcCCc
Q 037841 272 PTITDVKMLIKRGDNVGYQKGSFVLGILKQLGFDERKLVVYNSPEECHELFQKGSANGGIAAAFEEIPYGKLL-VGQHCY 350 (561)
Q Consensus 272 ~~I~sl~dL~~~~~~vg~~~gs~~~~~l~~~~~~~~~~~~~~s~~~~~~~l~~g~~~~gv~a~i~~~~~~~~~-l~~~~~ 350 (561)
.+|++++|| +|++|.+. ++.....++.+|. ..+.. ...|...+|++|. +|+........... +.+.++
T Consensus 128 ~pI~s~~Dl--kG~KiR~~-~~~~~~~~~~lGa---~pv~~-~~~E~y~ALq~G~----vDg~~~~~~~~~~~~~~ev~k 196 (301)
T 2pfz_A 128 RDIKQVSDM--KGLKWRAY-SPVTAKIAELVGA---QPVTV-QQAELAQAMATGV----IDSYMSSGSTGFDTKTYEYIK 196 (301)
T ss_dssp SCCSSGGGG--TTCEEEES-SHHHHHHHHHHTC---EEEEC-CGGGHHHHHHTTS----CSEEEECHHHHHHTTGGGTCC
T ss_pred CCCCChHHh--cCCEEecC-ChhHHHHHHHcCC---cceec-CHHHHHHHHhcCe----eeEEecCccccccccHHHHhh
Confidence 579999999 79999885 6666678888774 22333 6778999999999 99985543332211 112243
Q ss_pred ceEEeCcccccCceEEEecCCC--CChhhHHHHHhh
Q 037841 351 KYTMVEPTFKTAGFGFAFPLHS--PLVHDVSKAILS 384 (561)
Q Consensus 351 ~l~~v~~~~~~~~~~~~~~k~s--pl~~~in~~Il~ 384 (561)
+...... ......+++.+.. -|-+...++|.+
T Consensus 197 -y~~~~~~-~~~~~~~~~n~~~~~~L~~~~q~~i~~ 230 (301)
T 2pfz_A 197 -KFYDTEA-WLPKNAVLVNKKAFDALDPATQQALKK 230 (301)
T ss_dssp -EEECCCC-CCCEEEEEEEHHHHHTSCHHHHHHHHH
T ss_pred -hheeccc-ccceeEEEEcHHHHhcCCHHHHHHHHH
Confidence 3222222 2233456666652 244444444433
No 62
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=95.33 E-value=0.036 Score=49.32 Aligned_cols=77 Identities=13% Similarity=0.137 Sum_probs=60.4
Q ss_pred HHHHHHHhhhhcccCCCCCCCccCccchhHHHHHHHhhhcc-cc-ccccchhHHHHHHHHHHHHHHHHHhHhhheeeeEe
Q 037841 190 IFIGFVVWALEHRVNEDFRGPARHQVGTSFWFSFSTMVFSQ-RE-RVISNLARFVVIVWYFVVLVLTQSYTASLTSLLTV 267 (561)
Q Consensus 190 i~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~-~~~s~~~Ril~~~w~~~~lil~~~Yta~LtS~Lt~ 267 (561)
++.+++++.+|+..+ ++...++..++|+++.++.-.| ++ .|.+..+|++.++|.++++.+.+...+.+++.++.
T Consensus 64 ~~~a~~~~~~E~~~~----~~~~~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~~ 139 (155)
T 2a9h_A 64 LAGSYLAVLAERGAP----GAALISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVG 139 (155)
T ss_dssp HHHHHHHHHHHTTSS----CSSTTSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhccCC----CCccCcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555777776432 2334578999999999999777 33 57889999999999999999999999999998876
Q ss_pred ecc
Q 037841 268 QQL 270 (561)
Q Consensus 268 ~~~ 270 (561)
...
T Consensus 140 ~~~ 142 (155)
T 2a9h_A 140 REQ 142 (155)
T ss_dssp CCC
T ss_pred HHH
Confidence 543
No 63
>1atg_A MODA, periplasmic molybdate-binding protein; tungstate, ABC transporter; 1.20A {Azotobacter vinelandii} SCOP: c.94.1.1
Probab=95.21 E-value=0.16 Score=46.88 Aligned_cols=70 Identities=10% Similarity=0.068 Sum_probs=43.2
Q ss_pred HHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCc-ccEEEeceeeecC---cceeee--ccccccccceE
Q 037841 84 IDVFKAVIQELPYAVAYDFVPYGQPDGTSSGSYNDLIYQVFLGE-FDAAVGDITILLN---RSNYVD--FTLPYTESGVS 157 (561)
Q Consensus 84 idl~~~i~~~l~f~v~~~~v~~~~~~g~~ngs~~~li~~l~~g~-~D~~vg~~~it~~---R~~~vd--fT~p~~~~~~~ 157 (561)
-++++.+.++-|.++++ .. ++-.+++.+|.+|+ +|+++..-....+ ....+. -..|+....++
T Consensus 15 ~~~~~~F~~~p~i~v~~--~~---------~~s~~l~~~l~~g~~~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 83 (231)
T 1atg_A 15 EQLAGQFAKQTGHAVVI--SS---------GSSGPVYAQIVNGAPYNVFFSADEKSPEKLDNQGFALPGSRFTYAIGKLV 83 (231)
T ss_dssp HHHHHHHHHHHCCCEEE--EE---------ECHHHHHHHHHTTCCCSEEECSSSHHHHHHHHTTCBCTTCCEEEEECCEE
T ss_pred HHHHHHHHhccCCeEEE--EE---------CCcHHHHHHHHcCCCCCEEEeCChhHHHHHHhcCCCcCCceeEeeeeeEE
Confidence 45777777776655444 33 24578999999998 9998763211111 111111 24678888899
Q ss_pred EEEEccC
Q 037841 158 MIVPIKD 164 (561)
Q Consensus 158 ivvp~~~ 164 (561)
+++++..
T Consensus 84 lv~~~~~ 90 (231)
T 1atg_A 84 LWSAKPG 90 (231)
T ss_dssp EEESSTT
T ss_pred EEEcCCC
Confidence 9988554
No 64
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=95.14 E-value=0.69 Score=44.73 Aligned_cols=194 Identities=14% Similarity=0.126 Sum_probs=116.2
Q ss_pred CceEEEEecCCCCCcceEEEeeCCCCCCCceEEEehHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCc
Q 037841 48 EKKLRIGVPVKKGFSYFVNVTIDPKTQEPTSVTGFCIDVFKAVIQELPYAVAYDFVPYGQPDGTSSGSYNDLIYQVFLGE 127 (561)
Q Consensus 48 g~~LrVgv~~~~~~~pf~~~~~d~~~~~~~~~~G~~idl~~~i~~~l~f~v~~~~v~~~~~~g~~ngs~~~li~~l~~g~ 127 (561)
.+.|+||+. +.+ ...+-.+++..+.++.+ .+++++.. ++..+++.+|.+|+
T Consensus 94 ~g~l~i~~~--~~~-----------------~~~~l~~~l~~f~~~~P-~i~i~l~~---------~~~~~~~~~l~~g~ 144 (306)
T 3fzv_A 94 AGQIDIGCF--ETV-----------------APLYLPGLIAGFRQAYP-GVEIRIRD---------GEQQELVQGLTSGR 144 (306)
T ss_dssp CEEEEEEEE--GGG-----------------HHHHHHHHHHHHHHHCT-TEEEEEEE---------ECHHHHHHHHHHTS
T ss_pred CceEEEEec--hhh-----------------hHHHHHHHHHHHHHHCC-CeEEEEEe---------CCHHHHHHHHHCCC
Confidence 467999997 322 12355678999999998 46777665 36789999999999
Q ss_pred ccEEEeceeeecCcceeeecccccc-ccceEEEEEccCCCCCCcceeccccchhhHHHHHHHHHHHHHHHhhhhcccCCC
Q 037841 128 FDAAVGDITILLNRSNYVDFTLPYT-ESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWALEHRVNED 206 (561)
Q Consensus 128 ~D~~vg~~~it~~R~~~vdfT~p~~-~~~~~ivvp~~~~~~~~~~~fl~PF~~~vW~~~~~~~i~~~~v~~~l~~~~~~~ 206 (561)
+|+++.... .....+. ..++. ....+++++...+..
T Consensus 145 ~Dl~i~~~~---~~~~~l~-~~~l~~~~~~~~v~~~~~pl~--------------------------------------- 181 (306)
T 3fzv_A 145 FDLAFLYEH---DLDSTIE-TEPLMPPQRPHALLPEGHRFA--------------------------------------- 181 (306)
T ss_dssp CSEEEECSS---SCCTTEE-EEESSCCBCCEEEEETTCTTT---------------------------------------
T ss_pred ccEEEEecc---ccccccc-eeeeeeccccEEEecCCCccc---------------------------------------
Confidence 999986322 1122222 34555 677788887554321
Q ss_pred CCCCccCccchhHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHhHhhheeeeEeeccCCCcCCHHHHHhCCCe
Q 037841 207 FRGPARHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWYFVVLVLTQSYTASLTSLLTVQQLQPTITDVKMLIKRGDN 286 (561)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~Ril~~~w~~~~lil~~~Yta~LtS~Lt~~~~~~~I~sl~dL~~~~~~ 286 (561)
....-+++||. +.+
T Consensus 182 ----------------------------------------------------------------~~~~~~~~dL~--~~~ 195 (306)
T 3fzv_A 182 ----------------------------------------------------------------GQAQVSLRDLC--LEP 195 (306)
T ss_dssp ----------------------------------------------------------------TSSEECHHHHT--TSC
T ss_pred ----------------------------------------------------------------CCCCCCHHHHc--CCC
Confidence 00124789994 555
Q ss_pred eEEEeCch----HHHHHHhcCCCccceeecCChHHHHHHhhccccCCceeEEeecchhHHHHHhcCCcceEEe--Ccccc
Q 037841 287 VGYQKGSF----VLGILKQLGFDERKLVVYNSPEECHELFQKGSANGGIAAAFEEIPYGKLLVGQHCYKYTMV--EPTFK 360 (561)
Q Consensus 287 vg~~~gs~----~~~~l~~~~~~~~~~~~~~s~~~~~~~l~~g~~~~gv~a~i~~~~~~~~~l~~~~~~l~~v--~~~~~ 360 (561)
+....... ...++++.+.........++.+....++..|. ..+++-........ .. ...+..+ +....
T Consensus 196 ~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~~g~----Gia~lp~~~~~~~~-~~-~~~l~~~~~~~~~~ 269 (306)
T 3fzv_A 196 MILLDVQPSRTYFVSLFEELGLTPNIAFSSPSIEMVRGMVGQGF----GFSLLVTRPHSECT-YD-GKKVVMVDLAEPVS 269 (306)
T ss_dssp EEEECCTTHHHHHHHHHHHTTCCCCEEEEESCHHHHHHHHHTTS----CBEEECCCCSCSBC-TT-SCBEEEEEESSCCC
T ss_pred EEEecCCcchHHHHHHHHHcCCCCCeEEEeCCHHHHHHHHHcCC----CEEEEecccccccc-cC-CCceEEEECCCCCc
Confidence 54433322 23445555665555567789999999999987 44444433222211 11 1124443 33344
Q ss_pred cCceEEEecCCCCChhhHHHHHhhc
Q 037841 361 TAGFGFAFPLHSPLVHDVSKAILSV 385 (561)
Q Consensus 361 ~~~~~~~~~k~spl~~~in~~Il~l 385 (561)
...++++.+++...-..+...+..+
T Consensus 270 ~~~~~l~~~~~~~~~~~~~~f~~~l 294 (306)
T 3fzv_A 270 TSGLAAAWLKRAQLTKPARLFVDYC 294 (306)
T ss_dssp BCCCEEEEETTSCCCHHHHHHHHHH
T ss_pred cceEEEEEeCCcccCHHHHHHHHHH
Confidence 5678888888866555554444333
No 65
>3oxn_A Putative transcriptional regulator, LYSR family; structural genomics, PSI-2, protein structure initiative; 2.70A {Vibrio parahaemolyticus}
Probab=95.13 E-value=0.29 Score=45.59 Aligned_cols=85 Identities=16% Similarity=0.163 Sum_probs=60.0
Q ss_pred CceEEEEecCCCCCcceEEEeeCCCCCCCceEEEehHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCc
Q 037841 48 EKKLRIGVPVKKGFSYFVNVTIDPKTQEPTSVTGFCIDVFKAVIQELPYAVAYDFVPYGQPDGTSSGSYNDLIYQVFLGE 127 (561)
Q Consensus 48 g~~LrVgv~~~~~~~pf~~~~~d~~~~~~~~~~G~~idl~~~i~~~l~f~v~~~~v~~~~~~g~~ngs~~~li~~l~~g~ 127 (561)
.+.|+||+. +.+ ...+-..++..+.++.+ .+++++.. ++..+++.+|.+|+
T Consensus 18 ~g~l~Ig~~--~~~-----------------~~~~l~~~l~~f~~~~P-~i~l~~~~---------~~~~~~~~~l~~g~ 68 (241)
T 3oxn_A 18 DQTFTIATT--DYA-----------------MQTILPFALPRIYQEAP-NVSFNFLP---------LQHDRLSDQLTYEG 68 (241)
T ss_dssp CCEEEEEEC--SHH-----------------HHHTHHHHHHHHHHHCT-TCEEEEEE---------CCGGGHHHHHHTSC
T ss_pred CceEEEEec--hHH-----------------HHHHHHHHHHHHHHHCC-CCEEEEEE---------CCcccHHHHHHcCC
Confidence 578999996 222 22356688999999987 46777766 35678999999999
Q ss_pred ccEEEeceeeecCcceeeeccccccccceEEEEEccCC
Q 037841 128 FDAAVGDITILLNRSNYVDFTLPYTESGVSMIVPIKDS 165 (561)
Q Consensus 128 ~D~~vg~~~it~~R~~~vdfT~p~~~~~~~ivvp~~~~ 165 (561)
+|++++.... ....+. ..++....++++++...+
T Consensus 69 ~Dl~i~~~~~---~~~~~~-~~~l~~~~~~~v~~~~hp 102 (241)
T 3oxn_A 69 ADLAICRPTG---PVEPLR-SEILGRVGVLCLLSKQHP 102 (241)
T ss_dssp CSEEEECCSS---CCTTEE-EEEEECCCEEEEEETTSG
T ss_pred CCEEEecCCC---CCccce-eEEeecccEEEEEeCCCC
Confidence 9999873222 222232 466778899999986653
No 66
>2hzl_A Trap-T family sorbitol/mannitol transporter, periplasmic binding protein, SMOM; trap transporter, periplasmic subunit, ligand binding; 1.40A {Rhodobacter sphaeroides 2} PDB: 2hzk_A
Probab=95.11 E-value=0.14 Score=52.14 Aligned_cols=100 Identities=17% Similarity=0.128 Sum_probs=60.4
Q ss_pred CCcCCHHHHHhCCCeeEEEeCchHHHHHHhcCCCccceeecCChHHHHHHhhccccCCceeEEeecchhHHHHH--hcCC
Q 037841 272 PTITDVKMLIKRGDNVGYQKGSFVLGILKQLGFDERKLVVYNSPEECHELFQKGSANGGIAAAFEEIPYGKLLV--GQHC 349 (561)
Q Consensus 272 ~~I~sl~dL~~~~~~vg~~~gs~~~~~l~~~~~~~~~~~~~~s~~~~~~~l~~g~~~~gv~a~i~~~~~~~~~l--~~~~ 349 (561)
.+|++++|| +|++|.+. + .....++.+|.. .+. -...|...+|++|. +|+.....+...+-. .+-+
T Consensus 163 ~pI~s~~DL--kG~KiR~~-~-~~~~~~~~lGa~---pv~-~~~~e~y~ALq~G~----VDg~~~~~p~~~~~~~~~ev~ 230 (365)
T 2hzl_A 163 REINTVADM--QGLKMRVG-G-FAGKVMERLGVV---PQQ-IAGGDIYPALEKGT----IDATEWVGPYDDEKLGFFKVA 230 (365)
T ss_dssp SCCCSTGGG--TTCEEECC-T-THHHHHHTTTCE---EEC-CCTTSHHHHHHHTS----CSEECCSCHHHHHHHTGGGTC
T ss_pred CCCCChHHh--CCCEEecC-C-cHHHHHHHcCCc---cee-cCHHHHHHHHhCCC----cceeeccCccchhhcChHHhh
Confidence 579999999 79999886 4 556778877653 222 24567889999999 999886555543211 2224
Q ss_pred cceEEeCc-ccccCceEEEecCCC--CChhhHHHHHhh
Q 037841 350 YKYTMVEP-TFKTAGFGFAFPLHS--PLVHDVSKAILS 384 (561)
Q Consensus 350 ~~l~~v~~-~~~~~~~~~~~~k~s--pl~~~in~~Il~ 384 (561)
+ +..... ........++++++. -|-+...++|..
T Consensus 231 k-~~~~~~~~~~~~~~~~v~n~~~~~~L~~~~q~~l~~ 267 (365)
T 2hzl_A 231 P-YYYYPGWWEGGPTVHFMFNKSAYEGLTPTYQSLLRT 267 (365)
T ss_dssp C-EEEECBTTCSSCEEEEEEEHHHHHHSCHHHHHHHHH
T ss_pred h-eeeccCccccccceEEEEcHHHHhcCCHHHHHHHHH
Confidence 4 333333 222234467777752 144444444443
No 67
>1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein, glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 1us4_A*
Probab=94.93 E-value=0.11 Score=51.18 Aligned_cols=59 Identities=27% Similarity=0.256 Sum_probs=41.6
Q ss_pred cCCHHHHHhCCCeeEE-EeCchHH----HHHHhcCCCccce--eecCChHHHHHHhhccccCCceeEEeecc
Q 037841 274 ITDVKMLIKRGDNVGY-QKGSFVL----GILKQLGFDERKL--VVYNSPEECHELFQKGSANGGIAAAFEEI 338 (561)
Q Consensus 274 I~sl~dL~~~~~~vg~-~~gs~~~----~~l~~~~~~~~~~--~~~~s~~~~~~~l~~g~~~~gv~a~i~~~ 338 (561)
+++++||. |+++++ ..|+..+ .++++.+.....+ ..+.+..+...+|..|+ +|+.+...
T Consensus 123 i~sl~dL~--g~~i~~~~~gs~~~~~~~~~l~~~G~~~~~v~~~~~~~~~~~~~al~~G~----vda~~~~~ 188 (314)
T 1us5_A 123 IRTVADLK--GKRVVVGDVGSGTEQNARQILEAYGLTFDDLGQAIRVSASQGIQLMQDKR----ADALFYTV 188 (314)
T ss_dssp CSSGGGGT--TSEEECCCTTCHHHHHHHHHHHHTTCCGGGSSEEECCCHHHHHHHHHTTS----CSEEEEEE
T ss_pred CCcHHHhC--CCEeecCCCCchHHHHHHHHHHHcCCCHHHcCceecCCHHHHHHHHHcCC----ccEEEEcc
Confidence 68999994 778887 4566543 3445556654333 36667888999999999 99988653
No 68
>3jv9_A OXYR, transcriptional regulator, LYSR family; LYSR-type transcriptional regulator, LTTR, redox, structural genomics, OPPF; 2.39A {Neisseria meningitidis}
Probab=94.88 E-value=0.48 Score=42.90 Aligned_cols=70 Identities=16% Similarity=0.151 Sum_probs=50.1
Q ss_pred ehHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCcccEEEeceeeecCcceeeeccccccccceEEEEE
Q 037841 82 FCIDVFKAVIQELPYAVAYDFVPYGQPDGTSSGSYNDLIYQVFLGEFDAAVGDITILLNRSNYVDFTLPYTESGVSMIVP 161 (561)
Q Consensus 82 ~~idl~~~i~~~l~f~v~~~~v~~~~~~g~~ngs~~~li~~l~~g~~D~~vg~~~it~~R~~~vdfT~p~~~~~~~ivvp 161 (561)
+-.+++..+.++.+ .+++++.. ++..++.++|.+|++|+++...... ...+ -..++....++++++
T Consensus 18 ~l~~~l~~~~~~~P-~i~i~i~~---------~~~~~~~~~l~~g~~Dl~i~~~~~~---~~~~-~~~~l~~~~~~~v~~ 83 (219)
T 3jv9_A 18 LLPKLIVSLRRTAP-KMPLMLEE---------NYTHTLTESLKRGDVDAIIVAEPFQ---EPGI-VTEPLYDEPFFVIVP 83 (219)
T ss_dssp HHHHHHHHHHHHST-TCCEEEEE---------ECHHHHHHHHHHTSSSEEEEESSCC---CTTE-EEEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHCC-CcEEEEEe---------CCcHHHHHHHHcCCCCEEEEcCCCC---CCCe-eEEEeeeceEEEEEe
Confidence 55678889998887 46777665 3578999999999999998743222 2222 246677888999998
Q ss_pred ccCC
Q 037841 162 IKDS 165 (561)
Q Consensus 162 ~~~~ 165 (561)
...+
T Consensus 84 ~~~p 87 (219)
T 3jv9_A 84 KGHS 87 (219)
T ss_dssp TTCG
T ss_pred CCCC
Confidence 6543
No 69
>2fyi_A HTH-type transcriptional regulator CBL; Lys-R family, cofactor-binding DO cysteine biosynthesis; 2.80A {Escherichia coli K12} SCOP: c.94.1.1
Probab=94.75 E-value=1.4 Score=40.44 Aligned_cols=85 Identities=18% Similarity=0.244 Sum_probs=58.6
Q ss_pred CceEEEEecCCCCCcceEEEeeCCCCCCCceEEEehHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCc
Q 037841 48 EKKLRIGVPVKKGFSYFVNVTIDPKTQEPTSVTGFCIDVFKAVIQELPYAVAYDFVPYGQPDGTSSGSYNDLIYQVFLGE 127 (561)
Q Consensus 48 g~~LrVgv~~~~~~~pf~~~~~d~~~~~~~~~~G~~idl~~~i~~~l~f~v~~~~v~~~~~~g~~ngs~~~li~~l~~g~ 127 (561)
.+.||||+. +.+ ...+-.+++..+.++.+ .+++++.. ++..+++++|.+|+
T Consensus 13 ~g~lrIg~~--~~~-----------------~~~~l~~~l~~f~~~~P-~v~l~l~~---------~~~~~~~~~l~~g~ 63 (228)
T 2fyi_A 13 SGVLTIATT--HTQ-----------------ARYSLPEVIKAFRELFP-EVRLELIQ---------GTPQEIATLLQNGE 63 (228)
T ss_dssp CEEEEEEEC--HHH-----------------HHHTHHHHHHHHHHHCT-TEEEEEEE---------CCHHHHHHHHHHTS
T ss_pred cceEEEeec--cch-----------------HHHHHHHHHHHHHHHCC-CcEEEEEe---------CCHHHHHHHHHcCC
Confidence 467999996 221 12355688999999998 57777765 36789999999999
Q ss_pred ccEEEeceeeecCcceeeeccccccccceEEEEEccC
Q 037841 128 FDAAVGDITILLNRSNYVDFTLPYTESGVSMIVPIKD 164 (561)
Q Consensus 128 ~D~~vg~~~it~~R~~~vdfT~p~~~~~~~ivvp~~~ 164 (561)
+|++++.... .....+. ..++....++++++...
T Consensus 64 ~Dl~i~~~~~--~~~~~l~-~~~l~~~~~~~v~~~~h 97 (228)
T 2fyi_A 64 ADIGIASERL--SNDPQLV-AFPWFRWHHSLLVPHDH 97 (228)
T ss_dssp CSEEEESSSS--TTCTTEE-EEEEEEECEEEEEETTC
T ss_pred ccEEEEeccc--CCCCCce-EEEeeecceEEEecCCC
Confidence 9999863211 1112222 35777888899998654
No 70
>2y7p_A LYSR-type regulatory protein; transcription regulator, DNA-binding, transcription, transcr factor, transcription regulation; HET: SAL PEU; 1.85A {Burkholderia SP} PDB: 2y7k_A* 2y84_A 2y7w_A 2y7r_A
Probab=94.65 E-value=0.58 Score=43.02 Aligned_cols=71 Identities=13% Similarity=0.060 Sum_probs=51.2
Q ss_pred EehHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCcccEEEeceeeecCcceeeeccccccccceEEEE
Q 037841 81 GFCIDVFKAVIQELPYAVAYDFVPYGQPDGTSSGSYNDLIYQVFLGEFDAAVGDITILLNRSNYVDFTLPYTESGVSMIV 160 (561)
Q Consensus 81 G~~idl~~~i~~~l~f~v~~~~v~~~~~~g~~ngs~~~li~~l~~g~~D~~vg~~~it~~R~~~vdfT~p~~~~~~~ivv 160 (561)
.+-..++..+.++.+ .+++++.. ++..+++++|.+|++|++++... .....+.+ .|+....+++++
T Consensus 21 ~~lp~~l~~f~~~~P-~v~l~l~~---------~~~~~l~~~L~~g~iDl~i~~~~---~~~~~l~~-~~l~~~~~~~v~ 86 (218)
T 2y7p_A 21 YFMPPLMEALAQRAP-HIQISTLR---------PNAGNLKEDMESGAVDLALGLLP---ELQTGFFQ-RRLFRHRYVCMF 86 (218)
T ss_dssp HHHHHHHHHHHHHCT-TCEEEEEC---------CCTTTHHHHHHHTSSCEEEECCT---TCCTTEEE-EEEEEECEEEEE
T ss_pred HHHHHHHHHHHHHCC-CCEEEEEe---------CCcccHHHHHhCCCceEEEecCC---CCCcceeE-EEeeeccEEEEE
Confidence 456678999999998 47777765 35678999999999999986321 11223333 578888999999
Q ss_pred EccCC
Q 037841 161 PIKDS 165 (561)
Q Consensus 161 p~~~~ 165 (561)
+...+
T Consensus 87 ~~~hp 91 (218)
T 2y7p_A 87 RKDHP 91 (218)
T ss_dssp ETTCS
T ss_pred cCCCC
Confidence 96654
No 71
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=94.64 E-value=0.65 Score=45.13 Aligned_cols=177 Identities=8% Similarity=-0.002 Sum_probs=104.7
Q ss_pred ehHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCcccEEEec---eeeecCcceeeeccccccccceEE
Q 037841 82 FCIDVFKAVIQELPYAVAYDFVPYGQPDGTSSGSYNDLIYQVFLGEFDAAVGD---ITILLNRSNYVDFTLPYTESGVSM 158 (561)
Q Consensus 82 ~~idl~~~i~~~l~f~v~~~~v~~~~~~g~~ngs~~~li~~l~~g~~D~~vg~---~~it~~R~~~vdfT~p~~~~~~~i 158 (561)
+-.+++..+.++.+ .+++++... +..+++.+|.+|++|+++.. .... ...+ -..++....+++
T Consensus 115 ~l~~~l~~f~~~~P-~i~i~l~~~---------~~~~~~~~l~~g~~Dl~i~~~~~~~~~---~~~l-~~~~l~~~~~~~ 180 (310)
T 2esn_A 115 LLPPLMNRLQHSAP-GVRLRLVNA---------ERKLSVEALASGRIDFALGYDEEHERL---PEGI-QAHDWFADRYVV 180 (310)
T ss_dssp HHHHHHHHHHHHST-TCEEEEECC---------SSSCCHHHHHHTSSSEEEECCSTTCCC---CTTE-EEEEEEEECEEE
T ss_pred HHHHHHHHHHHHCC-CeEEEEEeC---------CcccHHHHHHcCCCCEEEecCcccccC---CcCc-ceeeeeccceEE
Confidence 45678888999987 467776652 34567888999999999864 2211 1222 235677888899
Q ss_pred EEEccCCCCCCcceeccccchhhHHHHHHHHHHHHHHHhhhhcccCCCCCCCccCccchhHHHHHHHhhhccccccccch
Q 037841 159 IVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWALEHRVNEDFRGPARHQVGTSFWFSFSTMVFSQRERVISNL 238 (561)
Q Consensus 159 vvp~~~~~~~~~~~fl~PF~~~vW~~~~~~~i~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~ 238 (561)
+++...+..
T Consensus 181 v~~~~~pl~----------------------------------------------------------------------- 189 (310)
T 2esn_A 181 VARRDHPRL----------------------------------------------------------------------- 189 (310)
T ss_dssp EEESSCTTC-----------------------------------------------------------------------
T ss_pred EEeCCCCCc-----------------------------------------------------------------------
Confidence 988554321
Q ss_pred hHHHHHHHHHHHHHHHHHhHhhheeeeEeeccCCCcCCHHHHHhCCCeeEEEe-C----chHHHHHHhcCCCccceeecC
Q 037841 239 ARFVVIVWYFVVLVLTQSYTASLTSLLTVQQLQPTITDVKMLIKRGDNVGYQK-G----SFVLGILKQLGFDERKLVVYN 313 (561)
Q Consensus 239 ~Ril~~~w~~~~lil~~~Yta~LtS~Lt~~~~~~~I~sl~dL~~~~~~vg~~~-g----s~~~~~l~~~~~~~~~~~~~~ 313 (561)
. ..-+++||. +.++.... + .....++.+.+.........+
T Consensus 190 --------------------------------~-~~i~~~dL~--~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 234 (310)
T 2esn_A 190 --------------------------------A-GAPTLEGYL--AERHAVVTPWNEDSGVIDRLLARSGLRREVAVQLP 234 (310)
T ss_dssp --------------------------------S-SSCCHHHHH--TSEEEEECTTCCSSCHHHHHHHHTTCCCEEEEEES
T ss_pred --------------------------------C-CCCCHHHHh--cCCcEEEeCCCCcccHHHHHHHhCCCCeeEEEeCC
Confidence 0 135688995 55544332 2 235566766666544456778
Q ss_pred ChHHHHHHhhccccCCceeEEeecchhHHHHHhcCCcceEEeC--cccccCceEEEecCCCCChhhHHHHHhhc
Q 037841 314 SPEECHELFQKGSANGGIAAAFEEIPYGKLLVGQHCYKYTMVE--PTFKTAGFGFAFPLHSPLVHDVSKAILSV 385 (561)
Q Consensus 314 s~~~~~~~l~~g~~~~gv~a~i~~~~~~~~~l~~~~~~l~~v~--~~~~~~~~~~~~~k~spl~~~in~~Il~l 385 (561)
+.+...+++..|. ..+++.. ......+... .+..++ .......++++.+++.+....+...+..+
T Consensus 235 ~~~~~~~~v~~g~----Gia~lp~-~~~~~~~~~~--~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l 301 (310)
T 2esn_A 235 TVLAALFLAGSTD----FLLTAPR-HAARALAEAA--GLALYPAPFDIPPYVLRLYSHVQHVGRDAHAWMIGQL 301 (310)
T ss_dssp CHHHHHHHHHTSS----CEEEEEH-HHHHHHHHHH--TEEEECCSSCCCCEEEEEEEECC--CCHHHHHHHHHS
T ss_pred CHHHHHHHHhcCC----eEEEcHH-HHHHHHhhcC--CceEecCCCCCCCeeEEEEEeCcccCCHHHHHHHHHH
Confidence 8999999999887 4444443 3333322221 233343 22234567788888866555554444443
No 72
>2ql3_A Probable transcriptional regulator, LYSR family P; APC7314, rhodococcus RHA1, structural genomics, PSI-2; HET: MSE; 2.05A {Rhodococcus SP}
Probab=94.63 E-value=1.3 Score=39.74 Aligned_cols=69 Identities=20% Similarity=0.189 Sum_probs=49.1
Q ss_pred ehHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCcccEEEeceeeecCcceeeeccccccccceEEEEE
Q 037841 82 FCIDVFKAVIQELPYAVAYDFVPYGQPDGTSSGSYNDLIYQVFLGEFDAAVGDITILLNRSNYVDFTLPYTESGVSMIVP 161 (561)
Q Consensus 82 ~~idl~~~i~~~l~f~v~~~~v~~~~~~g~~ngs~~~li~~l~~g~~D~~vg~~~it~~R~~~vdfT~p~~~~~~~ivvp 161 (561)
+-.+++..+.++.+ .+++++.. ++..++..+|.+|++|+++.... .....+. +.++....++++++
T Consensus 19 ~l~~~l~~f~~~~P-~i~i~l~~---------~~~~~l~~~l~~g~~Dl~i~~~~---~~~~~l~-~~~l~~~~~~~v~~ 84 (209)
T 2ql3_A 19 ILPSMLYAFTAEYP-RASVEFRE---------DTQNRLRTQLEGGELDVAIVYDL---DLSPEWQ-TVPLMTREPMVVLG 84 (209)
T ss_dssp THHHHHHHHHHHCT-TEEEEEEE---------CCHHHHHHHHHTTSCSEEEEESS---SCCTTEE-EEEEEEECCEEEEE
T ss_pred hHHHHHHHHHHHCC-CceEEEEE---------CcHHHHHHHHHcCCccEEEEecC---CCCCCce-EEEeecCceEEEEe
Confidence 45688999999998 57777765 36788999999999999986321 1112222 35677788888888
Q ss_pred ccC
Q 037841 162 IKD 164 (561)
Q Consensus 162 ~~~ 164 (561)
...
T Consensus 85 ~~h 87 (209)
T 2ql3_A 85 AEH 87 (209)
T ss_dssp TTC
T ss_pred CCC
Confidence 554
No 73
>2hxr_A HTH-type transcriptional regulator CYNR; CYNR transcriptional regulator LYSR struc genomics, PSI-2, protein structure initiative; 2.05A {Escherichia coli} PDB: 3hfu_A
Probab=94.47 E-value=1.4 Score=40.66 Aligned_cols=69 Identities=12% Similarity=0.233 Sum_probs=49.7
Q ss_pred ehHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCcccEEEeceeeecCcceeeeccccccccceEEEEE
Q 037841 82 FCIDVFKAVIQELPYAVAYDFVPYGQPDGTSSGSYNDLIYQVFLGEFDAAVGDITILLNRSNYVDFTLPYTESGVSMIVP 161 (561)
Q Consensus 82 ~~idl~~~i~~~l~f~v~~~~v~~~~~~g~~ngs~~~li~~l~~g~~D~~vg~~~it~~R~~~vdfT~p~~~~~~~ivvp 161 (561)
+-..++..+.++.+ .+++++.. ++..+++.+|.+|++|+++..... ....+. ..++....++++++
T Consensus 44 ~l~~~l~~f~~~~P-~v~l~~~~---------~~~~~~~~~l~~g~~Dl~i~~~~~---~~~~l~-~~~l~~~~~~~v~~ 109 (238)
T 2hxr_A 44 FIGPLMADFYARYP-SITLQLQE---------MSQEKIEDMLCRDELDVGIAFAPV---HSPELE-AIPLLTESLALVVA 109 (238)
T ss_dssp THHHHHHHHHHHCT-TSCEEEEE---------CCHHHHHHHHHTTSCSEEEEESSC---CCTTEE-EEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHhCC-CcEEEEEE---------CCHHHHHHHHHcCCCcEEEEcCCC---Ccccce-eeeeccCcEEEEEc
Confidence 45678899999998 57777766 357889999999999999863221 112232 35778888999998
Q ss_pred ccC
Q 037841 162 IKD 164 (561)
Q Consensus 162 ~~~ 164 (561)
...
T Consensus 110 ~~h 112 (238)
T 2hxr_A 110 QHH 112 (238)
T ss_dssp TTS
T ss_pred CCC
Confidence 554
No 74
>1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine biosynthesis, transcription regulation; 1.80A {Klebsiella aerogenes} SCOP: c.94.1.1
Probab=94.13 E-value=2.5 Score=41.33 Aligned_cols=192 Identities=13% Similarity=0.092 Sum_probs=113.6
Q ss_pred ehHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCcccEEEeceeeecCcceeeeccccccccceEEEEE
Q 037841 82 FCIDVFKAVIQELPYAVAYDFVPYGQPDGTSSGSYNDLIYQVFLGEFDAAVGDITILLNRSNYVDFTLPYTESGVSMIVP 161 (561)
Q Consensus 82 ~~idl~~~i~~~l~f~v~~~~v~~~~~~g~~ngs~~~li~~l~~g~~D~~vg~~~it~~R~~~vdfT~p~~~~~~~ivvp 161 (561)
+-..++..+.++.+ .+++++.. ++..+++.+|.+|++|+++...... ....+. ..++....++++++
T Consensus 107 ~l~~~l~~f~~~~P-~v~i~l~~---------~~~~~~~~~l~~g~~Dlai~~~~~~--~~~~l~-~~~L~~~~~~~v~~ 173 (324)
T 1al3_A 107 ALPGVIKGFIERYP-RVSLHMHQ---------GSPTQIAEAVSKGNADFAIATEALH--LYDDLV-MLPCYHWNRSIVVT 173 (324)
T ss_dssp TSHHHHHHHHHHCT-EEEEEEEE---------CCHHHHHHHHHTTCCSEEEESSCCC--TTSCEE-EEEEEEECEEEEEC
T ss_pred HHHHHHHHHHHHCC-CCEEEEEE---------CCHHHHHHHHHCCCceEEEEecCCC--CCCCee-EEEecCCceEEEEc
Confidence 34577888888887 46676665 3578999999999999998632211 112222 35677778888888
Q ss_pred ccCCCCCCcceeccccchhhHHHHHHHHHHHHHHHhhhhcccCCCCCCCccCccchhHHHHHHHhhhccccccccchhHH
Q 037841 162 IKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWALEHRVNEDFRGPARHQVGTSFWFSFSTMVFSQRERVISNLARF 241 (561)
Q Consensus 162 ~~~~~~~~~~~fl~PF~~~vW~~~~~~~i~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~Ri 241 (561)
...+..
T Consensus 174 ~~~pl~-------------------------------------------------------------------------- 179 (324)
T 1al3_A 174 PEHPLA-------------------------------------------------------------------------- 179 (324)
T ss_dssp TTSTTT--------------------------------------------------------------------------
T ss_pred CCCccc--------------------------------------------------------------------------
Confidence 554321
Q ss_pred HHHHHHHHHHHHHHHhHhhheeeeEeeccCCCcCCHHHHHhCCCeeEE-EeCch----HHHHHHhcCCCccceeecCChH
Q 037841 242 VVIVWYFVVLVLTQSYTASLTSLLTVQQLQPTITDVKMLIKRGDNVGY-QKGSF----VLGILKQLGFDERKLVVYNSPE 316 (561)
Q Consensus 242 l~~~w~~~~lil~~~Yta~LtS~Lt~~~~~~~I~sl~dL~~~~~~vg~-~~gs~----~~~~l~~~~~~~~~~~~~~s~~ 316 (561)
....-+++||. +.++.. ..++. ...++.+.+.........++.+
T Consensus 180 -----------------------------~~~~~~~~dL~--~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 228 (324)
T 1al3_A 180 -----------------------------TKGSVSIEELA--QYPLVTYTFGFTGRSELDTAFNRAGLTPRIVFTATDAD 228 (324)
T ss_dssp -----------------------------TTSCCCHHHHH--TSEEEEECTTSTTHHHHHHHHHHHTCCCEEEEEESSHH
T ss_pred -----------------------------cCCCCCHHHHh--CCCeEEecCCCcHHHHHHHHHHHcCCCCceEEEeCCHH
Confidence 00135688995 555443 33332 2344555565544456778888
Q ss_pred HHHHHhhccccCCceeEEeecchhHHHHHhcCCcceEEeC--cccccCceEEEecCCCCChhhHHHHHhhccccchhHHH
Q 037841 317 ECHELFQKGSANGGIAAAFEEIPYGKLLVGQHCYKYTMVE--PTFKTAGFGFAFPLHSPLVHDVSKAILSVTEGDKMKEI 394 (561)
Q Consensus 317 ~~~~~l~~g~~~~gv~a~i~~~~~~~~~l~~~~~~l~~v~--~~~~~~~~~~~~~k~spl~~~in~~Il~l~e~G~~~~i 394 (561)
....++..|. -.+++... ....... . .+..++ .......++++.+++.++...+...+..+.+. .-+.+
T Consensus 229 ~~~~lv~~G~----Giailp~~-~~~~~~~--~-~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~fi~~l~~~-~~~~~ 299 (324)
T 1al3_A 229 VIKTYVRLGL----GVGVIASM-AVDPVSD--P-DLVKLDANGIFSHSTTKIGFRRSTFLRSYMYDFIQRFAPH-LTRDV 299 (324)
T ss_dssp HHHHHHHHTS----CEEEEEGG-GCCTTTC--T-TSEEEECBTTBCCEEEEEEEETTCCCCHHHHHHHHHHCTT-CCHHH
T ss_pred HHHHHHHhCC----CeEEechh-hhhhhcc--C-CeEEEECCCCCcceEEEEEEeCCCCCCHHHHHHHHHHHHH-hccch
Confidence 8999999987 44454432 2222111 2 244432 22334567788888877766666666665544 23445
Q ss_pred HHHHcc
Q 037841 395 EDAWFK 400 (561)
Q Consensus 395 ~~kw~~ 400 (561)
.++++.
T Consensus 300 ~~~~~~ 305 (324)
T 1al3_A 300 VDTAVA 305 (324)
T ss_dssp HHHHHH
T ss_pred hhhhhh
Confidence 555543
No 75
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=94.12 E-value=0.68 Score=44.96 Aligned_cols=72 Identities=17% Similarity=0.106 Sum_probs=49.6
Q ss_pred ehHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCcccEEEeceeeecCcceeeeccccccccceEEEEE
Q 037841 82 FCIDVFKAVIQELPYAVAYDFVPYGQPDGTSSGSYNDLIYQVFLGEFDAAVGDITILLNRSNYVDFTLPYTESGVSMIVP 161 (561)
Q Consensus 82 ~~idl~~~i~~~l~f~v~~~~v~~~~~~g~~ngs~~~li~~l~~g~~D~~vg~~~it~~R~~~vdfT~p~~~~~~~ivvp 161 (561)
+-..++..+.++.+ .+++++.. ++.++++..|.+|++|+++....... ....+ -..++....++++++
T Consensus 106 ~l~~~l~~f~~~~P-~i~i~l~~---------~~~~~~~~~l~~g~~Dlai~~~~~~~-~~~~l-~~~~L~~~~~~~v~~ 173 (305)
T 3fxq_A 106 ALPLALASFAREFP-DVTVNVRD---------GMYPAVSPQLRDGTLDFALTAAHKHD-IDTDL-EAQPLYVSDVVIVGQ 173 (305)
T ss_dssp HHHHHHHHHHHHCT-TCEEEEEE---------CCTTTTHHHHHHTSSSEEEEECCGGG-SCTTE-EEEEEEECCEEEEEE
T ss_pred HHHHHHHHHHHHCC-CCEEEEEE---------CCHHHHHHHHHcCCCCEEEecCCCCC-CccCe-eEEEeecCcEEEEEc
Confidence 56678899999988 47777766 24567888999999999986322111 01122 246777888999998
Q ss_pred ccCC
Q 037841 162 IKDS 165 (561)
Q Consensus 162 ~~~~ 165 (561)
...+
T Consensus 174 ~~hp 177 (305)
T 3fxq_A 174 RQHP 177 (305)
T ss_dssp TTCT
T ss_pred CCCC
Confidence 6543
No 76
>1i6a_A OXYR, hydrogen peroxide-inducible genes activator; OXYR regulatory domain, oxidized form, transcription; 2.30A {Escherichia coli} SCOP: c.94.1.1 PDB: 1i69_A
Probab=94.08 E-value=0.13 Score=47.33 Aligned_cols=84 Identities=14% Similarity=0.173 Sum_probs=58.9
Q ss_pred CceEEEEecCCCCCcceEEEeeCCCCCCCceEEEehHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCc
Q 037841 48 EKKLRIGVPVKKGFSYFVNVTIDPKTQEPTSVTGFCIDVFKAVIQELPYAVAYDFVPYGQPDGTSSGSYNDLIYQVFLGE 127 (561)
Q Consensus 48 g~~LrVgv~~~~~~~pf~~~~~d~~~~~~~~~~G~~idl~~~i~~~l~f~v~~~~v~~~~~~g~~ngs~~~li~~l~~g~ 127 (561)
.+.||||+. +.+ ...+-.+++..+.++.+ .+++++.. ++..+++++|.+|+
T Consensus 4 ~g~lrIg~~--~~~-----------------~~~~l~~~l~~f~~~~P-~v~l~l~~---------~~~~~~~~~l~~g~ 54 (219)
T 1i6a_A 4 SGPLHIGLI--PTV-----------------GPYLLPHIIPMLHQTFP-KLEMYLHE---------AQTHQLLAQLDSGK 54 (219)
T ss_dssp CEEEEEEEC--TTT-----------------HHHHHHHHHHHHHHHCT-TEEEEEEE---------CCHHHHHHHHHHTS
T ss_pred ceEEEEEec--cch-----------------hhhhhhHHHHHHHHHCC-CeEEEEEE---------CChHHHHHHHHcCC
Confidence 467999996 222 12356688999999998 57777765 36789999999999
Q ss_pred ccEEEeceeeecCcceeeeccccccccceEEEEEccC
Q 037841 128 FDAAVGDITILLNRSNYVDFTLPYTESGVSMIVPIKD 164 (561)
Q Consensus 128 ~D~~vg~~~it~~R~~~vdfT~p~~~~~~~ivvp~~~ 164 (561)
+|+++.... .....+. ..++....++++++...
T Consensus 55 ~Dl~i~~~~---~~~~~l~-~~~l~~~~~~~v~~~~h 87 (219)
T 1i6a_A 55 LDAVILALV---KESEAFI-EVPLFDEPMLLAIYEDH 87 (219)
T ss_dssp CSEEEEECC---GGGTTSE-EEEEEEEEEEEEEETTS
T ss_pred eeEEEecCC---CCCCCcc-eeeeecccEEEEEcCCC
Confidence 999986321 1112232 35777888999998654
No 77
>4esw_A Pyrimidine biosynthesis enzyme THI13; thiamin pyrimidine biosynthesis, transferase; HET: CIT; 1.60A {Candida albicans} PDB: 4esx_A*
Probab=94.03 E-value=0.22 Score=49.94 Aligned_cols=64 Identities=19% Similarity=0.313 Sum_probs=44.9
Q ss_pred cCCHHHHHhCCCeeEEEeCchH----HHHHHhcCCCccceeecCChHHHHHHhhccccCCceeEEeecchhHHHH
Q 037841 274 ITDVKMLIKRGDNVGYQKGSFV----LGILKQLGFDERKLVVYNSPEECHELFQKGSANGGIAAAFEEIPYGKLL 344 (561)
Q Consensus 274 I~sl~dL~~~~~~vg~~~gs~~----~~~l~~~~~~~~~~~~~~s~~~~~~~l~~g~~~~gv~a~i~~~~~~~~~ 344 (561)
+++++|| .|++||+. ++.. ..+|++.+.+...+..+....+...++..|+ +||.+...++....
T Consensus 103 ~~~~~dL--kGK~ig~~-~~~~~~~l~~~L~~~Gl~~~dv~~v~~~~~~~~al~~G~----vDa~~~~~p~~~~~ 170 (342)
T 4esw_A 103 TSDFQSL--KGKRIGYV-GEFGKIQVDELTKHYGMTPDDYVAVRCGMNVAKYILEGT----IDCGIGIECIQQVE 170 (342)
T ss_dssp CSSGGGG--TTCEEEES-SSHHHHHHHHHHGGGTCCGGGSEEEECGGGHHHHHHHTS----SSEEEEETTTHHHH
T ss_pred cCCHHHh--CCCEEEec-CCchHHHHHHHHHHcCCChhheEEecCCHHHHHHHHcCC----CCEEEEeccchHHH
Confidence 5789999 69999984 4433 3444556776666555555556778999999 99998876665443
No 78
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=93.84 E-value=0.13 Score=44.70 Aligned_cols=56 Identities=9% Similarity=0.287 Sum_probs=49.0
Q ss_pred CccchhHHHHHHHhhhcc-cc-ccccchhHHHHHHHHHHHHHHHHHhHhhheeeeEee
Q 037841 213 HQVGTSFWFSFSTMVFSQ-RE-RVISNLARFVVIVWYFVVLVLTQSYTASLTSLLTVQ 268 (561)
Q Consensus 213 ~~~~~~~~~~~~~l~~~~-~~-~~~s~~~Ril~~~w~~~~lil~~~Yta~LtS~Lt~~ 268 (561)
.++.+++|+++.++..-| ++ .|.+..+|++.++|+++++.+.+...+.+++.+...
T Consensus 42 ~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~ 99 (137)
T 4h33_A 42 NNYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCK 99 (137)
T ss_dssp CSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTT
T ss_pred CCHHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999998777 43 678999999999999999999999999999987543
No 79
>3gzg_A Molybdate-binding periplasmic protein; permease; molybdate complex, mutant K127S, metal binding protein; 1.55A {Xanthomonas axonopodis PV} PDB: 2h5y_A
Probab=93.58 E-value=0.59 Score=44.85 Aligned_cols=70 Identities=11% Similarity=0.055 Sum_probs=44.3
Q ss_pred HHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCc-ccEEEeceeeecCc---ceeee--ccccccccceE
Q 037841 84 IDVFKAVIQELPYAVAYDFVPYGQPDGTSSGSYNDLIYQVFLGE-FDAAVGDITILLNR---SNYVD--FTLPYTESGVS 157 (561)
Q Consensus 84 idl~~~i~~~l~f~v~~~~v~~~~~~g~~ngs~~~li~~l~~g~-~D~~vg~~~it~~R---~~~vd--fT~p~~~~~~~ 157 (561)
-++.+.+.++.|.++++.+ ++-..++.++.+|. +|+.++.-.-..++ ...++ -..+|....++
T Consensus 38 ~~l~~~Fe~~~gi~V~~~~-----------~~Sg~l~~qi~~g~~~DV~~sa~~~~~~~l~~~gl~~~~~~~~~a~~~lv 106 (253)
T 3gzg_A 38 DEAATAYEKATGTPVRVSY-----------AASSALARQIEQGAPADVFLSADLEWMDYLQQHGLVLPAQRHNLLGNTLV 106 (253)
T ss_dssp HHHHHHHHHHHSCCEEEEE-----------ECHHHHHHHHHTTCCCSEEECSSHHHHHHHHHTTSSCGGGEEEEEEECEE
T ss_pred HHHHHHHHHHhCCeEEEEE-----------CChHHHHHHHHcCCCceEEEECCHHHHHHHHHCCCcCCCcceeEEeeEEE
Confidence 4678888888887666543 24567888998887 99988732111111 11221 23467778899
Q ss_pred EEEEccC
Q 037841 158 MIVPIKD 164 (561)
Q Consensus 158 ivvp~~~ 164 (561)
+++++..
T Consensus 107 l~~~~~~ 113 (253)
T 3gzg_A 107 LVAPASS 113 (253)
T ss_dssp EEEETTC
T ss_pred EEEECCC
Confidence 9998664
No 80
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=93.45 E-value=1.1 Score=42.89 Aligned_cols=84 Identities=6% Similarity=0.037 Sum_probs=58.2
Q ss_pred CceEEEEecCCCCCcceEEEeeCCCCCCCceEEEehHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCc
Q 037841 48 EKKLRIGVPVKKGFSYFVNVTIDPKTQEPTSVTGFCIDVFKAVIQELPYAVAYDFVPYGQPDGTSSGSYNDLIYQVFLGE 127 (561)
Q Consensus 48 g~~LrVgv~~~~~~~pf~~~~~d~~~~~~~~~~G~~idl~~~i~~~l~f~v~~~~v~~~~~~g~~ngs~~~li~~l~~g~ 127 (561)
.+.||||+. +.+. ..+-.+++..+.++.+ .+++++.. ++..+++.+|.+|+
T Consensus 90 ~g~l~Ig~~--~~~~-----------------~~~l~~~l~~f~~~~P-~i~l~~~~---------~~~~~~~~~l~~g~ 140 (294)
T 1ixc_A 90 VGELSVAYF--GTPI-----------------YRSLPLLLRAFLTSTP-TATVSLTH---------MTKDEQVEGLLAGT 140 (294)
T ss_dssp CEEEEEEEC--SGGG-----------------GTHHHHHHHHHHHHCT-TEEEEEEE---------CCHHHHHHHHHHTS
T ss_pred CceEEEEEc--cchh-----------------HHHHHHHHHHHHHHCC-CcEEEEEe---------CCHHHHHHHHHCCC
Confidence 467999997 3321 1345678899999988 46777665 35678999999999
Q ss_pred ccEEEeceeeecCcceeeeccccccccceEEEEEccC
Q 037841 128 FDAAVGDITILLNRSNYVDFTLPYTESGVSMIVPIKD 164 (561)
Q Consensus 128 ~D~~vg~~~it~~R~~~vdfT~p~~~~~~~ivvp~~~ 164 (561)
+|+++...... ...+. ..++....++++++...
T Consensus 141 ~Dl~i~~~~~~---~~~l~-~~~l~~~~~~~v~~~~~ 173 (294)
T 1ixc_A 141 IHVGFSRFFPR---HPGIE-IVNIAQEDLYLAVHRSQ 173 (294)
T ss_dssp CSEEEESCCCC---CTTEE-EEEEEEEEEEEEEEGGG
T ss_pred ccEEEEecCCC---CCCce-EEEEeeccEEEEEeCCC
Confidence 99998643221 12222 35677888899988554
No 81
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=92.97 E-value=0.3 Score=38.15 Aligned_cols=52 Identities=12% Similarity=0.098 Sum_probs=45.3
Q ss_pred ccchhHHHHHHHhhhcc-c-cccccchhHHHHHHHHHHHHHHHHHhHhhheeee
Q 037841 214 QVGTSFWFSFSTMVFSQ-R-ERVISNLARFVVIVWYFVVLVLTQSYTASLTSLL 265 (561)
Q Consensus 214 ~~~~~~~~~~~~l~~~~-~-~~~~s~~~Ril~~~w~~~~lil~~~Yta~LtS~L 265 (561)
++.+++|+++.++.-.| + ..|.+..+|++.+++.++++.+.+...+.+++.+
T Consensus 28 ~~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~l 81 (82)
T 3ldc_A 28 SWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL 81 (82)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999777 3 3678999999999999999999999999887654
No 82
>3r26_A Molybdate-binding periplasmic protein; protein binding; 1.70A {Escherichia coli} SCOP: c.94.1.1 PDB: 3axf_A 1amf_A 1wod_A
Probab=92.86 E-value=1.2 Score=42.02 Aligned_cols=115 Identities=13% Similarity=0.066 Sum_probs=63.6
Q ss_pred cCCHHHHHhCCCeeEEEeC------chHHHHHHhcCCC---ccceeecCChHHHHHHhhccccCCceeEEeecchhHHHH
Q 037841 274 ITDVKMLIKRGDNVGYQKG------SFVLGILKQLGFD---ERKLVVYNSPEECHELFQKGSANGGIAAAFEEIPYGKLL 344 (561)
Q Consensus 274 I~sl~dL~~~~~~vg~~~g------s~~~~~l~~~~~~---~~~~~~~~s~~~~~~~l~~g~~~~gv~a~i~~~~~~~~~ 344 (561)
++++.||.+ +.+|++.+- .+..+.|+..+.- ..+++...+..+....+.+|+ +++.+........
T Consensus 107 ~~~l~~l~~-~~~iai~~p~~~p~G~~a~~~l~~~g~~~~l~~~~~~~~~~~~~~~~v~~Ge----~d~gi~~~s~a~~- 180 (237)
T 3r26_A 107 KTNWTSLLN-GGRLAVGDPEHVPAGIYAKEALQKLGAWDTLSPKLAPAEDVRGALALVERNE----APLGIVYGSDAVA- 180 (237)
T ss_dssp TCCHHHHHT-TCCEEEECTTTCHHHHHHHHHHHHTTCHHHHGGGEEEESSHHHHHHHHHTTS----SSEEEEEHHHHHH-
T ss_pred hHhHHHhcC-CCeEEEeCCCCCChHHHHHHHHHHcCCHHHhhhcEEecCCHHHHHHHHHcCC----CCEEEEEeccccc-
Confidence 366777764 467887543 3445666665431 235566677888899999999 8888775443322
Q ss_pred HhcCCcceE-EeCccc-ccCceEEEecCCCCChhhHHHHHhhccccchhHHHHHHH
Q 037841 345 VGQHCYKYT-MVEPTF-KTAGFGFAFPLHSPLVHDVSKAILSVTEGDKMKEIEDAW 398 (561)
Q Consensus 345 l~~~~~~l~-~v~~~~-~~~~~~~~~~k~spl~~~in~~Il~l~e~G~~~~i~~kw 398 (561)
..... +. .+++.. ....+.+++.|+++= +.-.+.+ +...+..-+++..++
T Consensus 181 -~~~~~-~v~~~P~~~~~~~~~~~ai~k~~~~-~~A~~Fi-~fl~S~eaq~i~~~~ 232 (237)
T 3r26_A 181 -SKGVK-VVATFPEDSHKKVEYPVAVVEGHNN-ATVKAFY-DYLKGPQAAEIFKRY 232 (237)
T ss_dssp -CSSEE-EEEECCGGGSCCEEEEEEEBTTCCS-HHHHHHH-HHHTSHHHHHHHHHT
T ss_pred -CCCCe-EEEECCcccCCeeeeeEEEEcCCCC-HHHHHHH-HHHcCHHHHHHHHHc
Confidence 11111 21 234433 233456777888764 3333333 333333445555543
No 83
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=92.08 E-value=0.18 Score=40.83 Aligned_cols=57 Identities=12% Similarity=0.215 Sum_probs=48.9
Q ss_pred CccchhHHHHHHHhhhcc-c-cccccchhHHHHHHHHHHHHHHHHHhHhhheeeeEeec
Q 037841 213 HQVGTSFWFSFSTMVFSQ-R-ERVISNLARFVVIVWYFVVLVLTQSYTASLTSLLTVQQ 269 (561)
Q Consensus 213 ~~~~~~~~~~~~~l~~~~-~-~~~~s~~~Ril~~~w~~~~lil~~~Yta~LtS~Lt~~~ 269 (561)
.++.+++|+++.++.-.| + -.|.+..+|++.++|.++++.+.+...+.+++.++.+.
T Consensus 31 ~~~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~~~~ 89 (97)
T 3ouf_A 31 LRPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPS 89 (97)
T ss_dssp CCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred CCHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 368899999999999777 3 36789999999999999999999999999988776544
No 84
>2xwv_A Sialic acid-binding periplasmic protein SIAP; transport protein, trap, sugar transport; HET: SLB; 1.05A {Haemophilus influenzae} PDB: 2xxk_A* 2xa5_A* 2wyp_A* 2wx9_A* 2xwo_A* 2xwk_A* 2v4c_A* 2wyk_A* 2xwi_A* 3b50_A* 2cey_A 2cex_A
Probab=92.06 E-value=2.2 Score=42.18 Aligned_cols=101 Identities=10% Similarity=0.058 Sum_probs=61.5
Q ss_pred CCcCCHHHHHhCCCeeEEEeCchHHHHHHhcCCCccceeecCChHHHHHHhhccccCCceeEEeecchhHHHH-HhcCCc
Q 037841 272 PTITDVKMLIKRGDNVGYQKGSFVLGILKQLGFDERKLVVYNSPEECHELFQKGSANGGIAAAFEEIPYGKLL-VGQHCY 350 (561)
Q Consensus 272 ~~I~sl~dL~~~~~~vg~~~gs~~~~~l~~~~~~~~~~~~~~s~~~~~~~l~~g~~~~gv~a~i~~~~~~~~~-l~~~~~ 350 (561)
.+|++++|| +|++|.+.........++.+|.. .+.. ...|...+|++|. +|+.....+.+... +.+-++
T Consensus 133 ~pI~s~~Dl--kGlKiRv~~~~~~~~~~~alGa~---pv~m-~~~Evy~ALq~G~----vDg~~~~~~~~~~~~~~ev~k 202 (312)
T 2xwv_A 133 RAINSIADM--KGLKLRVPNAATNLAYAKYVGAS---PTPM-AFSEVYLALQTNA----VDGQENPLAAVQAQKFYEVQK 202 (312)
T ss_dssp SCCCSGGGG--TTCEEEECSCHHHHHHHHHHTCE---EEEC-CGGGHHHHHHTTS----SSEEEEEHHHHHHTTGGGSCS
T ss_pred CCcCCHHHh--CCCEEEeCCCHHHHHHHHHcCCe---eeec-CHHHHHHHHHcCC----cceEeccHHHHhhcchhhccc
Confidence 579999999 79999886544445778887752 2333 5678899999999 99998876655221 112243
Q ss_pred ceEEeCcccccCceEEEecCC--CCChhhHHHHHhh
Q 037841 351 KYTMVEPTFKTAGFGFAFPLH--SPLVHDVSKAILS 384 (561)
Q Consensus 351 ~l~~v~~~~~~~~~~~~~~k~--spl~~~in~~Il~ 384 (561)
+....... .....+++.+. .-|-+...++|..
T Consensus 203 -y~~~~~~~-~~~~~~~~n~~~~~~L~~~~q~~i~~ 236 (312)
T 2xwv_A 203 -FLAMTNHI-LNDQLYLVSNETYKELPEDLQKVVKD 236 (312)
T ss_dssp -EEECCCCC-EEEEEEEEEHHHHTTSCHHHHHHHHH
T ss_pred -eEEecCcc-ccceEEEEeHHHHhhCCHHHHHHHHH
Confidence 33333322 22234566665 2244555555544
No 85
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=92.01 E-value=0.29 Score=52.93 Aligned_cols=120 Identities=8% Similarity=0.098 Sum_probs=71.7
Q ss_pred ccchhHHHHHHHhhhcc-cc-ccccchhHHHHHHHHHHHHHHHHHhHhh-heeeeEee----ccCCC-cCCH-HHHHhCC
Q 037841 214 QVGTSFWFSFSTMVFSQ-RE-RVISNLARFVVIVWYFVVLVLTQSYTAS-LTSLLTVQ----QLQPT-ITDV-KMLIKRG 284 (561)
Q Consensus 214 ~~~~~~~~~~~~l~~~~-~~-~~~s~~~Ril~~~w~~~~lil~~~Yta~-LtS~Lt~~----~~~~~-I~sl-~dL~~~~ 284 (561)
++..++||++.++...| ++ .|.+..+|++.++|.++++.+.....+. ++++++.+ ..... .... +.+ ++
T Consensus 51 ~~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 128 (565)
T 4gx0_A 51 SFMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILPFGFVSMFLAPWIERRLRYHPTIELPDDT--RG 128 (565)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTSCCCBCCCCTTC--CS
T ss_pred chhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc--CC
Confidence 68899999999999777 33 5688889999999999999887776666 44444322 11111 1111 222 22
Q ss_pred CeeEEEe-CchHHHHHHhcCCCccceeecCChHHHHHHhhcc-ccCCceeEEeecchh
Q 037841 285 DNVGYQK-GSFVLGILKQLGFDERKLVVYNSPEECHELFQKG-SANGGIAAAFEEIPY 340 (561)
Q Consensus 285 ~~vg~~~-gs~~~~~l~~~~~~~~~~~~~~s~~~~~~~l~~g-~~~~gv~a~i~~~~~ 340 (561)
.+.+.. |.......+.+......++.++..++..+.+... . +.++..+...
T Consensus 129 -hviI~G~g~~g~~la~~L~~~~~~vvvid~~~~~~~~~~~~~~----~~~i~Gd~~~ 181 (565)
T 4gx0_A 129 -HILIFGIDPITRTLIRKLESRNHLFVVVTDNYDQALHLEEQEG----FKVVYGSPTD 181 (565)
T ss_dssp -CEEEESCCHHHHHHHHHTTTTTCCEEEEESCHHHHHHHHHSCS----SEEEESCTTC
T ss_pred -eEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcC----CeEEEeCCCC
Confidence 344433 4444444454433334566777666666666554 3 5666665433
No 86
>2i49_A Bicarbonate transporter; alpha-beta protein, C-clamp, ABC transporter, periplasmic SO binding protein, bicarbonate-binding protein; 1.35A {Synechocystis SP} PDB: 2i48_A 2i4b_A 2i4c_A
Probab=92.00 E-value=0.79 Score=47.70 Aligned_cols=106 Identities=14% Similarity=0.130 Sum_probs=64.3
Q ss_pred HHHH-HhCCC--eeEEE-eCchH----HHHHHhcCCCc---cceeecCChHHHHHHhhccccCCceeEEeecchhHHHHH
Q 037841 277 VKML-IKRGD--NVGYQ-KGSFV----LGILKQLGFDE---RKLVVYNSPEECHELFQKGSANGGIAAAFEEIPYGKLLV 345 (561)
Q Consensus 277 l~dL-~~~~~--~vg~~-~gs~~----~~~l~~~~~~~---~~~~~~~s~~~~~~~l~~g~~~~gv~a~i~~~~~~~~~l 345 (561)
++|| .+.|+ +||+. .++.. +.+|++.+.+. .+++.+ ...+...+|..|+ +||++...++.....
T Consensus 153 i~dL~k~~GK~~~Iav~~~gs~~~~~l~~~L~~~Gl~p~~DV~~v~~-~~~~~~~aL~~G~----iDa~~~~eP~~~~a~ 227 (429)
T 2i49_A 153 IKGFNKTNGRKFKAAHTFPNVNQDFWIRYWFAAGGVDPDTDIDLLAV-PPAETVQGMRNGT----MDAFSTGDPWPYRIV 227 (429)
T ss_dssp HHTHHHHHSSCCEEEESSTTSHHHHHHHHHHHHTTCCTTTTSEEEEC-CHHHHHHHHHHTC----CCEEEEETTHHHHHH
T ss_pred HHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCCCCCcEEEEEC-ChHHHHHHHHcCC----ccEEEeccchHHHHH
Confidence 6888 54577 99996 56654 33455556653 345555 5688899999999 999998888876665
Q ss_pred hcCCcce-EEeCcccccC-ceEEEecCC----CC-----ChhhHHHHHhhccc
Q 037841 346 GQHCYKY-TMVEPTFKTA-GFGFAFPLH----SP-----LVHDVSKAILSVTE 387 (561)
Q Consensus 346 ~~~~~~l-~~v~~~~~~~-~~~~~~~k~----sp-----l~~~in~~Il~l~e 387 (561)
.+..... ....+..... ...+++++. .| |+..+.++...+.+
T Consensus 228 ~~g~g~~~~~~~~~~~~~~~~vl~~~~~~~~~~Pe~v~~~~~A~~~A~~~~~~ 280 (429)
T 2i49_A 228 TENIGYMAGLTAQIWPYHPEEYLAIRADWVDKNPKATKALLKGIMEAQQWIDD 280 (429)
T ss_dssp HTTSCEEEEEHHHHSTTCCCCEEEEEHHHHHHCHHHHHHHHHHHHHHHHHHTS
T ss_pred HCCCCEEEEechHhcCCCceEEEEECHHHHHHCHHHHHHHHHHHHHHHHHHhC
Confidence 5543212 1112222222 245666654 44 44455555555554
No 87
>1sw5_A Osmoprotection protein (PROX); binding-protein, compatible solutes, cation-PI interactions, classical hydrogen bonds, protein binding; 1.80A {Archaeoglobus fulgidus} SCOP: c.94.1.1 PDB: 1sw4_A 1sw1_A 1sw2_A 3mam_A*
Probab=91.86 E-value=1.1 Score=43.34 Aligned_cols=113 Identities=10% Similarity=0.069 Sum_probs=62.2
Q ss_pred cCCHHHHHhCCC----eeEEEeCch-----HHHHHHhcCCCccceeecCChHHHHHHhhccccCCceeEEeecchhHHHH
Q 037841 274 ITDVKMLIKRGD----NVGYQKGSF-----VLGILKQLGFDERKLVVYNSPEECHELFQKGSANGGIAAAFEEIPYGKLL 344 (561)
Q Consensus 274 I~sl~dL~~~~~----~vg~~~gs~-----~~~~l~~~~~~~~~~~~~~s~~~~~~~l~~g~~~~gv~a~i~~~~~~~~~ 344 (561)
|+|++||. ++ .+|...+.. ....++.++++...+... +..+...++.+|+ ++++....+.....
T Consensus 125 i~si~DL~--g~~~~~~~g~~~~~~~~~~g~~~~~~~yGl~~~~~~~~-~~~~~~~Al~~g~----vd~~~~~~p~~~~~ 197 (275)
T 1sw5_A 125 VEKISDLA--EFADQLVFGSDPEFASRPDGLPQIKKVYGFEFKEVKQM-EPTLMYEAIKNKQ----VDVIPAYTTDSRVD 197 (275)
T ss_dssp CCBGGGGT--TTGGGCEEEECHHHHHSTTSHHHHHHHHTCCCSEEEEC-CGGGHHHHHHTTS----CSEEEEETTCHHHH
T ss_pred CCcHHHHH--hhhcceEeccCcccccccchHHHHHHhcCCCcccccCC-CHHHHHHHHHcCC----CeEEEEeCCCcchh
Confidence 89999995 54 444422211 112555566654455554 5667899999999 99998887765532
Q ss_pred HhcCCcceEEeCcc---cccCceEEEecCCCCChhhHHHHHhhcc---ccchhHHHHHH
Q 037841 345 VGQHCYKYTMVEPT---FKTAGFGFAFPLHSPLVHDVSKAILSVT---EGDKMKEIEDA 397 (561)
Q Consensus 345 l~~~~~~l~~v~~~---~~~~~~~~~~~k~spl~~~in~~Il~l~---e~G~~~~i~~k 397 (561)
++ ++.++... +.......+++++..=...+-+.|.++. ....+.++..+
T Consensus 198 --~~--~l~~L~d~~~~~~~~~~~~v~~~~~~~~P~~~~~l~~l~~~l~~~~~~~l~~~ 252 (275)
T 1sw5_A 198 --LF--NLKILEDDKGALPPYDAIIIVNGNTAKDEKLISVLKLLEDRIDTDTMRALNYQ 252 (275)
T ss_dssp --HT--TEEECBCTTCCSCCCEEEEEECTTGGGCHHHHHHHHTTTTCCCHHHHHHHHHH
T ss_pred --cC--CeEEccCCcccCCccceeeeeehhhccChHHHHHHHHHHccCCHHHHHHHHHH
Confidence 22 25555432 2223345566665320034455555553 33344444443
No 88
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=91.76 E-value=0.37 Score=40.25 Aligned_cols=54 Identities=13% Similarity=0.268 Sum_probs=47.0
Q ss_pred ccchhHHHHHHHhhhcc-cc-ccccchhHHHHHHHHHHHHHHHHHhHhhheeeeEe
Q 037841 214 QVGTSFWFSFSTMVFSQ-RE-RVISNLARFVVIVWYFVVLVLTQSYTASLTSLLTV 267 (561)
Q Consensus 214 ~~~~~~~~~~~~l~~~~-~~-~~~s~~~Ril~~~w~~~~lil~~~Yta~LtS~Lt~ 267 (561)
++.+++|+++.++...| ++ .|.+..+|++.++|.++++.+.....+.+++.++.
T Consensus 49 ~~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~~ 104 (114)
T 2q67_A 49 RPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQL 104 (114)
T ss_dssp CHHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999777 33 57888999999999999999999999998887644
No 89
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcripti regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A*
Probab=91.50 E-value=3.8 Score=39.70 Aligned_cols=69 Identities=12% Similarity=0.067 Sum_probs=49.3
Q ss_pred ehHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCcccEEEeceeeecCcceeeeccccccccceEEEEE
Q 037841 82 FCIDVFKAVIQELPYAVAYDFVPYGQPDGTSSGSYNDLIYQVFLGEFDAAVGDITILLNRSNYVDFTLPYTESGVSMIVP 161 (561)
Q Consensus 82 ~~idl~~~i~~~l~f~v~~~~v~~~~~~g~~ngs~~~li~~l~~g~~D~~vg~~~it~~R~~~vdfT~p~~~~~~~ivvp 161 (561)
+-.+++..+.++.+ .+++++.. ++..+++.+|.+|++|+++....... ..+ -..++....++++++
T Consensus 104 ~l~~~l~~f~~~~P-~v~i~l~~---------~~~~~~~~~l~~g~~Dlai~~~~~~~---~~l-~~~~L~~~~~~~v~~ 169 (312)
T 2h9b_A 104 LLPRIIHLYRQAHP-NLRIELYE---------MGTKAQTEALKEGRIDAGFGRLKISD---PAI-KHSLLRNERLMVAVH 169 (312)
T ss_dssp THHHHHHHHHHTCT-TCEEEEEE---------CCHHHHHHHHHTTSCSEEEESSCCCC---TTE-EEEEEEEEEEEEEEE
T ss_pred hHHHHHHHHHHHCC-CcEEEEEe---------CCHHHHHHHHHcCCCCEEEEeCCCCC---CCc-eEEEeecceEEEEEc
Confidence 45678899999887 46777765 35789999999999999987432211 122 235677888888888
Q ss_pred ccC
Q 037841 162 IKD 164 (561)
Q Consensus 162 ~~~ 164 (561)
...
T Consensus 170 ~~h 172 (312)
T 2h9b_A 170 ASH 172 (312)
T ss_dssp TTS
T ss_pred CCC
Confidence 554
No 90
>1uth_A LYSR-type regulatory protein; transcription regulation, transcriptional regulator; 2.2A {Burkholderia SP} SCOP: c.94.1.1 PDB: 1utb_A 1utb_B 1uth_B 2uyf_A 2uye_A
Probab=91.37 E-value=1.9 Score=42.02 Aligned_cols=69 Identities=14% Similarity=0.130 Sum_probs=46.2
Q ss_pred ehHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCcccEEEeceeeecCcceeeeccccccccceEEEEE
Q 037841 82 FCIDVFKAVIQELPYAVAYDFVPYGQPDGTSSGSYNDLIYQVFLGEFDAAVGDITILLNRSNYVDFTLPYTESGVSMIVP 161 (561)
Q Consensus 82 ~~idl~~~i~~~l~f~v~~~~v~~~~~~g~~ngs~~~li~~l~~g~~D~~vg~~~it~~R~~~vdfT~p~~~~~~~ivvp 161 (561)
+-..++..+.+..+ .+.+++.. ++..+++.+|.+|++|+++..... ....+ -..++....++++++
T Consensus 119 ~l~~~l~~f~~~~P-~v~l~l~~---------~~~~~~~~~l~~g~~Dl~i~~~~~---~~~~l-~~~~l~~~~~~~v~~ 184 (315)
T 1uth_A 119 FMPPLMEALAQRAP-HIQISTLR---------PNAGNLKEDMESGAVDLALGLLPE---LQTGF-FQRRLFRHRYVCMFR 184 (315)
T ss_dssp HHHHHHHHHHHHCT-TCEEEEEC---------TTSSCHHHHHHHTSCCEEEECCTT---CCTTE-EEEEEEEECEEEEEE
T ss_pred HHHHHHHHHHHHCC-CcEEEEEe---------CCcccHHHHHHCCCCCEEEecCCC---CCCCc-eEEEeeccceEEEEe
Confidence 34567778888887 46777655 245678899999999999863221 11222 235677788888888
Q ss_pred ccC
Q 037841 162 IKD 164 (561)
Q Consensus 162 ~~~ 164 (561)
...
T Consensus 185 ~~h 187 (315)
T 1uth_A 185 KDH 187 (315)
T ss_dssp TTC
T ss_pred CCC
Confidence 554
No 91
>2hpg_A ABC transporter, periplasmic substrate-binding protein; periplasmic binding protein, thermophilic proteins, trap- transport; HET: MSE; 1.90A {Thermotoga maritima}
Probab=91.18 E-value=0.87 Score=45.48 Aligned_cols=102 Identities=14% Similarity=-0.081 Sum_probs=62.6
Q ss_pred CCCcCCHHHHHhCCCeeEEEeCchHHHHHHhcCCCccceeecCChHHHHHHhhccccCCceeEEeecchhHHHH-HhcCC
Q 037841 271 QPTITDVKMLIKRGDNVGYQKGSFVLGILKQLGFDERKLVVYNSPEECHELFQKGSANGGIAAAFEEIPYGKLL-VGQHC 349 (561)
Q Consensus 271 ~~~I~sl~dL~~~~~~vg~~~gs~~~~~l~~~~~~~~~~~~~~s~~~~~~~l~~g~~~~gv~a~i~~~~~~~~~-l~~~~ 349 (561)
..+|++++|| +|++|.+..+......++.+|.. .+. -...|...+|++|. +|+.......+... +.+-.
T Consensus 147 ~~pI~s~~DL--kG~KiRv~~~~~~~~~~~alGa~---pv~-m~~~Evy~ALq~G~----VDg~~~p~~~~~~~~~~ev~ 216 (327)
T 2hpg_A 147 NKPIRKPEDL--NGLRIRTPGAPAWQESIRSLGAI---PVA-VNFGEIYTAVQTRA----VDGAELTYANVYNGGLYEVL 216 (327)
T ss_dssp SSCCSSGGGG--TTCEEECCSSHHHHHHHHHHTSE---EEC-CCGGGHHHHHHTTS----CSEEEECHHHHHHTTGGGTC
T ss_pred CCCCCCHHHH--CCCEEEeCCCHHHHHHHHHcCCE---eee-cCHHHHHHHHHcCC----eeEEECCHHHHHHcChhhhc
Confidence 3579999999 79999886444566788888752 222 35678999999999 99998765443211 11224
Q ss_pred cceEEeCcccccCceEEEecCCCC--ChhhHHHHHhh
Q 037841 350 YKYTMVEPTFKTAGFGFAFPLHSP--LVHDVSKAILS 384 (561)
Q Consensus 350 ~~l~~v~~~~~~~~~~~~~~k~sp--l~~~in~~Il~ 384 (561)
+ +....... .....+++++..- |-+...++|..
T Consensus 217 k-y~~~~~~~-~~~~~~~~n~~~~~~L~~e~q~~i~~ 251 (327)
T 2hpg_A 217 K-YMSETGHF-LLINFEIVSADWFNSLPKEYQKIIEE 251 (327)
T ss_dssp C-EEEEEEEE-EEEEEEEEEHHHHHHSCHHHHHHHHH
T ss_pred c-EEEecCcc-hhceEEEEeHHHHhcCCHHHHHHHHH
Confidence 3 32222222 2345667777622 55555555544
No 92
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=91.17 E-value=0.66 Score=40.58 Aligned_cols=54 Identities=13% Similarity=0.263 Sum_probs=46.8
Q ss_pred ccchhHHHHHHHhhhcc-cc-ccccchhHHHHHHHHHHHHHHHHHhHhhheeeeEe
Q 037841 214 QVGTSFWFSFSTMVFSQ-RE-RVISNLARFVVIVWYFVVLVLTQSYTASLTSLLTV 267 (561)
Q Consensus 214 ~~~~~~~~~~~~l~~~~-~~-~~~s~~~Ril~~~w~~~~lil~~~Yta~LtS~Lt~ 267 (561)
++.+++|+++.++...| ++ .|.+..+|++.++|.++++.+.+...+.+++.+..
T Consensus 52 ~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~ 107 (148)
T 3vou_A 52 RPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNVQL 107 (148)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
T ss_pred CHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999777 43 56889999999999999999999999998876643
No 93
>2h98_A HTH-type transcriptional regulator CATM; BENM, LTTR; 1.80A {Acinetobacter SP} PDB: 2h9q_A* 2f7b_A 2f7c_A* 3glb_A* 3m1e_A
Probab=90.79 E-value=5 Score=39.02 Aligned_cols=69 Identities=12% Similarity=0.214 Sum_probs=49.2
Q ss_pred ehHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCcccEEEeceeeecCcceeeeccccccccceEEEEE
Q 037841 82 FCIDVFKAVIQELPYAVAYDFVPYGQPDGTSSGSYNDLIYQVFLGEFDAAVGDITILLNRSNYVDFTLPYTESGVSMIVP 161 (561)
Q Consensus 82 ~~idl~~~i~~~l~f~v~~~~v~~~~~~g~~ngs~~~li~~l~~g~~D~~vg~~~it~~R~~~vdfT~p~~~~~~~ivvp 161 (561)
+-..++..+.++.+ .+++++.. ++..+++.+|.+|++|+++...... ...+ -..++....++++++
T Consensus 104 ~l~~~l~~f~~~~P-~v~l~l~~---------~~~~~~~~~l~~g~~Dlai~~~~~~---~~~l-~~~~L~~~~~~~v~~ 169 (313)
T 2h98_A 104 LLPEIIYLFRQQNP-EIHIELIE---------CGTKDQINALKQGKIDLGFGRLKIT---DPAI-RRIMLHKEQLKLAIH 169 (313)
T ss_dssp THHHHHHHHHHHCT-TSEEEEEE---------CCHHHHHHHHHHTSCSEEEESSCCC---CTTE-EEEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHCC-CeEEEEEe---------CChHHHHHHHHcCCCCEEEEeCCCC---CCCe-eEEEeeeCcEEEEEc
Confidence 45678899999987 46777765 3578999999999999998643221 1122 235677788888888
Q ss_pred ccC
Q 037841 162 IKD 164 (561)
Q Consensus 162 ~~~ 164 (561)
...
T Consensus 170 ~~h 172 (313)
T 2h98_A 170 KHH 172 (313)
T ss_dssp TTS
T ss_pred CCC
Confidence 553
No 94
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=90.79 E-value=0.37 Score=48.31 Aligned_cols=61 Identities=13% Similarity=0.052 Sum_probs=51.6
Q ss_pred CccCccchhHHHHHHHhhhcc-c-cccccchhHHHHHHHHHHHHHHHHHhHhhheeeeEeecc
Q 037841 210 PARHQVGTSFWFSFSTMVFSQ-R-ERVISNLARFVVIVWYFVVLVLTQSYTASLTSLLTVQQL 270 (561)
Q Consensus 210 ~~~~~~~~~~~~~~~~l~~~~-~-~~~~s~~~Ril~~~w~~~~lil~~~Yta~LtS~Lt~~~~ 270 (561)
....++..++|+++.++.-.| + ..|.+..+|++.+++.++++++.+...+.+++.++.+..
T Consensus 92 ~~~~s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~~~~ 154 (333)
T 1p7b_A 92 QSPPGFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARPRA 154 (333)
T ss_dssp SSSSSTHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred CCCCcHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334678999999999999776 3 356888999999999999999999999999998876653
No 95
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=90.78 E-value=0.51 Score=46.63 Aligned_cols=61 Identities=16% Similarity=0.089 Sum_probs=51.0
Q ss_pred CCccCccchhHHHHHHHhhhcc-c-cccccchhHHHHHHHHHHHHHHHHHhHhhheeeeEeec
Q 037841 209 GPARHQVGTSFWFSFSTMVFSQ-R-ERVISNLARFVVIVWYFVVLVLTQSYTASLTSLLTVQQ 269 (561)
Q Consensus 209 ~~~~~~~~~~~~~~~~~l~~~~-~-~~~~s~~~Ril~~~w~~~~lil~~~Yta~LtS~Lt~~~ 269 (561)
+....++..++|+++.++.-.| + ..|.+..+|++.+++.++++++.+...+.+.+.++.+.
T Consensus 77 ~~~~~s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~~~~ 139 (301)
T 1xl4_A 77 NARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTRPT 139 (301)
T ss_dssp TSCTTCHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred CCCcCCHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3345678999999999999776 3 35688899999999999999999999999988886653
No 96
>1r9l_A Glycine betaine-binding periplasmic protein; periplasmic binding protein, cation-PI interactions, tryptophan BOX, protein binding; 1.59A {Escherichia coli} SCOP: c.94.1.1 PDB: 1r9q_A*
Probab=90.51 E-value=0.82 Score=45.24 Aligned_cols=40 Identities=15% Similarity=0.086 Sum_probs=29.3
Q ss_pred HHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCcccEEEe
Q 037841 84 IDVFKAVIQELPYAVAYDFVPYGQPDGTSSGSYNDLIYQVFLGEFDAAVG 133 (561)
Q Consensus 84 idl~~~i~~~l~f~v~~~~v~~~~~~g~~ngs~~~li~~l~~g~~D~~vg 133 (561)
..+.+.+.+.+||+|++. .+ .+...+..+|.+|++|+...
T Consensus 24 ~~i~~~~Le~~Gy~Ve~~--~~--------~~~~~~~~Al~~G~iDi~~e 63 (309)
T 1r9l_A 24 TLLVSRALEKLGYTVNKP--SE--------VDYNVGYTSLASGDATFTAV 63 (309)
T ss_dssp HHHHHHHHHHTTCEECCC--EE--------CCHHHHHHHHHHTSSCEEEE
T ss_pred HHHHHHHHHHcCCCeEEe--ec--------CchHHHHHHHhcCCceEEec
Confidence 466777778899876653 21 14577888999999999875
No 97
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=90.47 E-value=0.52 Score=44.14 Aligned_cols=71 Identities=8% Similarity=0.151 Sum_probs=54.7
Q ss_pred HHHHHhhhhcccCCCCCCCccCccchhHHHHHHHhhhcc-c-cccccchhHHHHHHHHHHHHHHHHHhHhhheeeeE
Q 037841 192 IGFVVWALEHRVNEDFRGPARHQVGTSFWFSFSTMVFSQ-R-ERVISNLARFVVIVWYFVVLVLTQSYTASLTSLLT 266 (561)
Q Consensus 192 ~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~-~~~~s~~~Ril~~~w~~~~lil~~~Yta~LtS~Lt 266 (561)
.+.+++.+|+.. .++...++..++|+++.++...| + ..|.+..+|++.+++.++++.+.+...|.+++.++
T Consensus 147 ~~~~~~~~e~~~----~~~~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~~i~~~~~ 219 (223)
T 1orq_C 147 GAFAIYIVEYPD----PNSSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNMFQ 219 (223)
T ss_dssp HHHHHHHTTSSS----TTCSCCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC----cCCCcCcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666532 12234578999999999999776 3 35788999999999999999999999999887664
No 98
>3kos_A HTH-type transcriptional activator AMPR; alpha-beta sandwich, DNA-binding, transcription regulation; HET: MES; 1.83A {Citrobacter freundii} PDB: 3kot_A
Probab=90.28 E-value=3.7 Score=36.99 Aligned_cols=103 Identities=9% Similarity=-0.020 Sum_probs=58.9
Q ss_pred CCHHHHHhCCCee-EEEeCchHHHHHHhcCCCc----cceeecCChHHHHHHhhccccCCceeEEeecchhHHHHHhcCC
Q 037841 275 TDVKMLIKRGDNV-GYQKGSFVLGILKQLGFDE----RKLVVYNSPEECHELFQKGSANGGIAAAFEEIPYGKLLVGQHC 349 (561)
Q Consensus 275 ~sl~dL~~~~~~v-g~~~gs~~~~~l~~~~~~~----~~~~~~~s~~~~~~~l~~g~~~~gv~a~i~~~~~~~~~l~~~~ 349 (561)
.+++||. +.++ .+..++....++.+.+... .....+++.+....++..|. -.+++-....... .....
T Consensus 96 ~~~~~L~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~----Gi~~lp~~~~~~~-~~~~~ 168 (219)
T 3kos_A 96 QTPADIL--KFPLLRSYRRDEWALWMQTVGEAPPSPTHNVMVFDSSVTMLEAAQAGM----GVAIAPVRMFTHL-LSSER 168 (219)
T ss_dssp SSGGGGG--GSCEEEESCTTHHHHHHHHTTCCCCCTTSCEEEESCHHHHHHHHHTTS----CBEEEEGGGCHHH-HHTTS
T ss_pred CCHHHHh--cCceeccCCccCHHHHHHHcCCCCCccccceeEEccHHHHHHHHHcCC----CeEeehHHhhHHH-HHcCC
Confidence 5678884 4443 4445566667776643221 23367788999999999998 4555554433333 33321
Q ss_pred cceEEeCcccccCceEEEecCCCCChhhHHHHHhhc
Q 037841 350 YKYTMVEPTFKTAGFGFAFPLHSPLVHDVSKAILSV 385 (561)
Q Consensus 350 ~~l~~v~~~~~~~~~~~~~~k~spl~~~in~~Il~l 385 (561)
- .....+......++++.+++.+....+...+..+
T Consensus 169 l-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~l 203 (219)
T 3kos_A 169 I-VQPFLTQIDLGSYWITRLQSRPETPAMREFSRWL 203 (219)
T ss_dssp S-BCCCCCCBCSCEEEEEEETTSCCCHHHHHHHHHH
T ss_pred e-eccccCCccCCcEEEEecccccCCHHHHHHHHHH
Confidence 1 1222333344567888888876666555555444
No 99
>1xs5_A 29 kDa protein, membrane lipoprotein TPN32; periplasmic binding protein, methionine, membrane protein; 1.85A {Treponema pallidum} SCOP: c.94.1.1
Probab=90.09 E-value=5.3 Score=37.84 Aligned_cols=36 Identities=17% Similarity=0.203 Sum_probs=28.2
Q ss_pred HHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCcccEEE
Q 037841 87 FKAVIQELPYAVAYDFVPYGQPDGTSSGSYNDLIYQVFLGEFDAAV 132 (561)
Q Consensus 87 ~~~i~~~l~f~v~~~~v~~~~~~g~~ngs~~~li~~l~~g~~D~~v 132 (561)
++...++.|+ +.+++.+. +|.....+|.+|++|+..
T Consensus 21 ~~~~~~~~Gl--~ve~~~f~--------d~~~~n~AL~~G~iD~n~ 56 (241)
T 1xs5_A 21 AKEEVKKQHI--ELRIVEFT--------NYVALNEAVMRGDILMNF 56 (241)
T ss_dssp HHHHHHTTTE--EEEEEECS--------CHHHHHHHHHHTSSSEEE
T ss_pred HHHHHHHcCC--eEEEEEcC--------ChHHHHHHHHcCCCCEec
Confidence 3445666675 66777776 799999999999999974
No 100
>2vpn_A Periplasmic substrate binding protein; ectoine, hydroxyectoine, trap-transporter, periplasmic binding protein, transport; HET: 4CS; 1.55A {Halomonas elongata} PDB: 2vpo_A* 3gyy_A
Probab=89.34 E-value=1.3 Score=43.84 Aligned_cols=102 Identities=10% Similarity=-0.053 Sum_probs=63.3
Q ss_pred CCCcCCHHHHHhCCCeeEEEeCchHHHHHHhcCCCccceeecCChHHHHHHhhccccCCceeEEeecchhHHHH-HhcCC
Q 037841 271 QPTITDVKMLIKRGDNVGYQKGSFVLGILKQLGFDERKLVVYNSPEECHELFQKGSANGGIAAAFEEIPYGKLL-VGQHC 349 (561)
Q Consensus 271 ~~~I~sl~dL~~~~~~vg~~~gs~~~~~l~~~~~~~~~~~~~~s~~~~~~~l~~g~~~~gv~a~i~~~~~~~~~-l~~~~ 349 (561)
..+|++++|| +|.+|.+..+......++.+|.. .+.. ...|...+|++|. +|+........... +.+..
T Consensus 129 ~~pI~s~~Dl--kG~KiR~~~~~~~~~~~~~lGa~---pv~m-~~~Evy~ALq~G~----VDg~~~~~~~~~~~~~~ev~ 198 (316)
T 2vpn_A 129 DEPITSPEDF--DNKKIRTMTNPLLAETYKAFGAT---PTPL-PWGEVYGGLQTGI----IDGQENPIFWIESGGLYEVS 198 (316)
T ss_dssp SSCCCSGGGG--TTCEEEECSCHHHHHHHHHHTCE---EEEC-CGGGHHHHHHHTS----CSEEEEEHHHHHHTTGGGTC
T ss_pred CCCCCChHHh--CCCEEEeCCCHHHHHHHHHcCCe---eeec-CHHHHHHHHHcCC----cceeeCCHHHHHhcCHHHhh
Confidence 3579999999 79999887666677788888743 2333 5678999999999 99988664443211 11224
Q ss_pred cceEEeCcccccCceEEEecCCCC--ChhhHHHHHhh
Q 037841 350 YKYTMVEPTFKTAGFGFAFPLHSP--LVHDVSKAILS 384 (561)
Q Consensus 350 ~~l~~v~~~~~~~~~~~~~~k~sp--l~~~in~~Il~ 384 (561)
+ +....... .....+++++..- |-+...++|..
T Consensus 199 ~-y~~~~~~~-~~~~~~~~n~~~~~~L~~~~q~~l~~ 233 (316)
T 2vpn_A 199 P-NLTFTSHG-WFTTAMMANQDFYEGLSEEDQQLVQD 233 (316)
T ss_dssp C-EEEECCCC-EEEEEEEEEHHHHHHSCHHHHHHHHH
T ss_pred h-hheecccc-ccceEEEEcHHHHhcCCHHHHHHHHH
Confidence 3 33332222 2345667777622 44455555544
No 101
>1twy_A ABC transporter, periplasmic substrate-binding PR; nysgxrc target, structural genomics, protei structure initiative, PSI; 1.65A {Vibrio cholerae o1 biovar eltor} SCOP: c.94.1.1
Probab=89.09 E-value=13 Score=34.99 Aligned_cols=72 Identities=14% Similarity=0.054 Sum_probs=48.1
Q ss_pred ehHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCcccEEEeceeeecCcc-eeeeccccccccceEEEE
Q 037841 82 FCIDVFKAVIQELPYAVAYDFVPYGQPDGTSSGSYNDLIYQVFLGEFDAAVGDITILLNRS-NYVDFTLPYTESGVSMIV 160 (561)
Q Consensus 82 ~~idl~~~i~~~l~f~v~~~~v~~~~~~g~~ngs~~~li~~l~~g~~D~~vg~~~it~~R~-~~vdfT~p~~~~~~~ivv 160 (561)
+-.+++..+.++.+ .+++++.. ++..+++.+|.+|++|+++.......... ..+. ..++....+++++
T Consensus 41 ~l~~~l~~f~~~~P-~i~v~i~~---------~~~~~~~~~l~~g~~Di~i~~~~~~~~~~~~~~~-~~~l~~~~~~~v~ 109 (290)
T 1twy_A 41 IMDVLAEKYNQQHP-ETYVAVQG---------VGSTAGISLLKKGVADIAMTSRYLTESEAQNTLH-TFTLAFDGLAIVV 109 (290)
T ss_dssp HHHHHHHHHHHHCT-TCEEEEEE---------SCHHHHHHHHHTTSCSEEEESSCCCTTTCCTTCE-EEEEEEEEEEEEE
T ss_pred HHHHHHHHHHhhCC-CceEEEEe---------cCcHHHHHHHhcCCCcEEEecCCCchhhhhcCce-EEEEEeeeEEEEE
Confidence 34567888888885 35666655 35788999999999999987433222110 1222 3577788889988
Q ss_pred EccC
Q 037841 161 PIKD 164 (561)
Q Consensus 161 p~~~ 164 (561)
+...
T Consensus 110 ~~~~ 113 (290)
T 1twy_A 110 NQAN 113 (290)
T ss_dssp CTTC
T ss_pred CCCC
Confidence 8554
No 102
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=88.89 E-value=0.2 Score=50.20 Aligned_cols=124 Identities=12% Similarity=0.031 Sum_probs=74.4
Q ss_pred ccchhHHHHHHHhhhcc-c-cccccchhHHHHHHHHHHHHHHHHHhHhhheeeeEeeccCCCcCCHHHHHhCCCeeEEEe
Q 037841 214 QVGTSFWFSFSTMVFSQ-R-ERVISNLARFVVIVWYFVVLVLTQSYTASLTSLLTVQQLQPTITDVKMLIKRGDNVGYQK 291 (561)
Q Consensus 214 ~~~~~~~~~~~~l~~~~-~-~~~~s~~~Ril~~~w~~~~lil~~~Yta~LtS~Lt~~~~~~~I~sl~dL~~~~~~vg~~~ 291 (561)
++..++|+++.++...| + ..|.+..+|++.++|.++++++.+...+.+++.++.......... ....+ ..++.+..
T Consensus 45 ~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~viI~G 122 (336)
T 1lnq_A 45 SWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINREQMKLMGL-IDVAK-SRHVVICG 122 (336)
T ss_dssp CSSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC-------------------CEEEEES
T ss_pred CHHHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhcc-cCCEEEEC
Confidence 67889999999999777 3 356888999999999999999999999999999888665432221 11211 23455544
Q ss_pred Cc-hHHHHHHhcCCCccceeecCChHHHHHHhhccccCCceeEEeecchhHHHHH
Q 037841 292 GS-FVLGILKQLGFDERKLVVYNSPEECHELFQKGSANGGIAAAFEEIPYGKLLV 345 (561)
Q Consensus 292 gs-~~~~~l~~~~~~~~~~~~~~s~~~~~~~l~~g~~~~gv~a~i~~~~~~~~~l 345 (561)
.+ ......+++..... ++.++..++..+ +.... +.++..+......+.
T Consensus 123 ~G~~g~~l~~~L~~~g~-v~vid~~~~~~~-~~~~~----~~~i~gd~~~~~~L~ 171 (336)
T 1lnq_A 123 WSESTLECLRELRGSEV-FVLAEDENVRKK-VLRSG----ANFVHGDPTRVSDLE 171 (336)
T ss_dssp CCHHHHHHHTTGGGSCE-EEEESCGGGHHH-HHHTT----CEEEESCTTSHHHHH
T ss_pred CcHHHHHHHHHHHhCCc-EEEEeCChhhhh-HHhCC----cEEEEeCCCCHHHHH
Confidence 33 33334344322233 666676666666 55433 677776655444443
No 103
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=88.76 E-value=0.027 Score=50.77 Aligned_cols=72 Identities=17% Similarity=0.174 Sum_probs=56.6
Q ss_pred HHHHhhhhcccCCCCCCCccCccchhHHHHHHHhhhcc-c-cccccchhHHHHHHHHHHHHHHHHHhHhhheeeeEee
Q 037841 193 GFVVWALEHRVNEDFRGPARHQVGTSFWFSFSTMVFSQ-R-ERVISNLARFVVIVWYFVVLVLTQSYTASLTSLLTVQ 268 (561)
Q Consensus 193 ~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~-~~~~s~~~Ril~~~w~~~~lil~~~Yta~LtS~Lt~~ 268 (561)
++++|.+++.. .++...++..++|+++.++...| + ..|.+..+|++.++|.++++++.+...+.+++.++..
T Consensus 50 a~~~~~~e~~~----~~~~~~~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~~ 123 (166)
T 3pjs_K 50 SYLAVLAERGA----PGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGQ 123 (166)
T ss_dssp SSSSSSTTSSS----TTCCCCSTTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSSS
T ss_pred HHHHHHHhcCC----CCcccCCHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555432 23344678899999999998776 3 4678999999999999999999999999999998743
No 104
>3onm_A Transcriptional regulator LRHA; LYSR, ROVM, transcription factor, virulence factor; 2.40A {Yersinia pseudotuberculosis}
Probab=88.55 E-value=11 Score=34.50 Aligned_cols=83 Identities=16% Similarity=0.091 Sum_probs=58.7
Q ss_pred CceEEEEecCCCCCcceEEEeeCCCCCCCceEEEehHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCc
Q 037841 48 EKKLRIGVPVKKGFSYFVNVTIDPKTQEPTSVTGFCIDVFKAVIQELPYAVAYDFVPYGQPDGTSSGSYNDLIYQVFLGE 127 (561)
Q Consensus 48 g~~LrVgv~~~~~~~pf~~~~~d~~~~~~~~~~G~~idl~~~i~~~l~f~v~~~~v~~~~~~g~~ngs~~~li~~l~~g~ 127 (561)
.+.||||+. +.+ ...+-.+++..+.++.+ .+++++.. ++..+++.+|.+|+
T Consensus 26 ~g~l~Ig~~--~~~-----------------~~~~l~~~l~~f~~~~P-~i~l~i~~---------~~~~~~~~~L~~g~ 76 (238)
T 3onm_A 26 EGSLIIGAS--DDT-----------------ADTLLPFLLNRVATLYP-RLAIDVRV---------KRSPFIADMLSSGE 76 (238)
T ss_dssp -CCEEEEEC--HHH-----------------HTTHHHHHHHHHHHHCT-TCCEEEEE---------CCHHHHHHHHHHTS
T ss_pred ceeEEEecc--chh-----------------hHHHHHHHHHHHHHHCC-CcEEEEEE---------CCHHHHHHHHHCCC
Confidence 467999996 222 12355688999999987 46777765 36789999999999
Q ss_pred ccEEEeceeeecCcceeeeccccccccceEEEEEccCC
Q 037841 128 FDAAVGDITILLNRSNYVDFTLPYTESGVSMIVPIKDS 165 (561)
Q Consensus 128 ~D~~vg~~~it~~R~~~vdfT~p~~~~~~~ivvp~~~~ 165 (561)
+|+++..... .. --..++....++++++...+
T Consensus 77 ~Dl~i~~~~~-----~~-~~~~~l~~~~~~~v~~~~~~ 108 (238)
T 3onm_A 77 VDLAITTAKV-----DS-HPHVILRTSPTLWYCSVDYQ 108 (238)
T ss_dssp CSEEEECSCC------C-CCEEEEEEECEEEEEETTCC
T ss_pred ccEEEEecCC-----CC-cceEEeecCCEEEEEcCCCC
Confidence 9999874321 11 23567788889999986543
No 105
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=87.08 E-value=0.73 Score=46.46 Aligned_cols=72 Identities=8% Similarity=0.144 Sum_probs=55.7
Q ss_pred HHHHHHhhhhcccCCCCCCCccCccchhHHHHHHHhhhcc-c-cccccchhHHHHHHHHHHHHHHHHHhHhhheeeeE
Q 037841 191 FIGFVVWALEHRVNEDFRGPARHQVGTSFWFSFSTMVFSQ-R-ERVISNLARFVVIVWYFVVLVLTQSYTASLTSLLT 266 (561)
Q Consensus 191 ~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~-~~~~s~~~Ril~~~w~~~~lil~~~Yta~LtS~Lt 266 (561)
+.+++++.+++..+++ ...++..++|+++.++...| + ..|.+..+|++.+++.++++++.+...+.+++.+.
T Consensus 142 ~~a~~~~~~e~~~~~~----~f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~ 215 (355)
T 3beh_A 142 AVALAAYVIERDIQPE----KFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFY 215 (355)
T ss_dssp HHHHHHHHHHTTTCHH----HHSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCCCc----ccccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455567777643221 12468899999999999776 3 35688999999999999999999999999987664
No 106
>3hn0_A Nitrate transport protein; ABC transporter, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.75A {Parabacteroides distasonis}
Probab=85.45 E-value=1.1 Score=43.46 Aligned_cols=61 Identities=11% Similarity=0.043 Sum_probs=43.3
Q ss_pred CCCeeEEE-eCchHHH----HHHhcCCCccceeecC-ChHHHHHHhhccccCCceeEEeecchhHHHHHhcC
Q 037841 283 RGDNVGYQ-KGSFVLG----ILKQLGFDERKLVVYN-SPEECHELFQKGSANGGIAAAFEEIPYGKLLVGQH 348 (561)
Q Consensus 283 ~~~~vg~~-~gs~~~~----~l~~~~~~~~~~~~~~-s~~~~~~~l~~g~~~~gv~a~i~~~~~~~~~l~~~ 348 (561)
+|++|++. .|+..+. +|++.+. ..+++... +..+...++.+|+ +||.+...+++.....+.
T Consensus 95 kGK~Iav~~~gs~~~~ll~~~L~~~Gl-dv~~~~~~~~~~~~~~al~~G~----vDa~~~~eP~~~~a~~~~ 161 (283)
T 3hn0_A 95 KEPALYVFGNGTTPDILTRYYLGRQRL-DYPLNYAFNTAGEITQGILAGK----VNRAVLGEPFLSIALRKD 161 (283)
T ss_dssp CSCCEECSSTTSHHHHHHHHHHHHHTC-CCCEECSCCSHHHHHHHHHHTS----CSEEEECTTHHHHHHHHC
T ss_pred CCCEEEecCCCCcHHHHHHHHHHHcCC-ceEEEEccCCHHHHHHHHHcCC----CCEEEecccHHHHHHhhC
Confidence 69999975 5555433 3445566 44555555 6899999999999 999998888877655443
No 107
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=84.32 E-value=2.1 Score=42.61 Aligned_cols=57 Identities=16% Similarity=0.152 Sum_probs=49.6
Q ss_pred ccchhHHHHHHHhhhcc-c-cccccchhHHHHHHHHHHHHHHHHHhHhhheeeeEeecc
Q 037841 214 QVGTSFWFSFSTMVFSQ-R-ERVISNLARFVVIVWYFVVLVLTQSYTASLTSLLTVQQL 270 (561)
Q Consensus 214 ~~~~~~~~~~~~l~~~~-~-~~~~s~~~Ril~~~w~~~~lil~~~Yta~LtS~Lt~~~~ 270 (561)
++..++|+++.++.-.| + ..|.+..+|++.+++.++++++.+.-++.+++.++.+..
T Consensus 78 s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~~~~ 136 (321)
T 2qks_A 78 GFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQPKK 136 (321)
T ss_dssp THHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred chhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 78899999999999776 3 367889999999999999999999999999998876543
No 108
>2rin_A Putative glycine betaine-binding ABC transporter protein; type II binding protein, aromatic BOX, acetylcholine, protein binding; HET: ACH; 1.80A {Rhizobium meliloti} PDB: 2rej_A 2rf1_A 2reg_A* 3hcq_A
Probab=84.28 E-value=2 Score=42.13 Aligned_cols=62 Identities=18% Similarity=0.165 Sum_probs=38.2
Q ss_pred cCCHHHHHh-----CCCeeEEEeCchHHH----HHH--hcCCCccceeecCChH-----HHHHHhhccccCCceeEEeec
Q 037841 274 ITDVKMLIK-----RGDNVGYQKGSFVLG----ILK--QLGFDERKLVVYNSPE-----ECHELFQKGSANGGIAAAFEE 337 (561)
Q Consensus 274 I~sl~dL~~-----~~~~vg~~~gs~~~~----~l~--~~~~~~~~~~~~~s~~-----~~~~~l~~g~~~~gv~a~i~~ 337 (561)
|+|++||.+ .|+.+|+..|+.... .|+ .+++...+ .+.... +...++.+|+ ++++...
T Consensus 105 I~si~DLk~~~~~~~gk~~g~~~G~~~~~~~~~~l~~~~yGL~d~~--~v~~~~~~~~a~~~~A~~~g~----~~v~~~w 178 (298)
T 2rin_A 105 IKDFKDIAAHKDELDGKIYGIEPGNDGNRLIIDMVEKGTFDLKGFE--VVESSEQGMLAQVARAEKSGD----PIVFLGW 178 (298)
T ss_dssp CCBGGGSGGGHHHHTSEEECCSTTCHHHHHHHHHHHHTGGGCTTCE--EECCCHHHHHHHHHHHHHTTC----CCEEEEE
T ss_pred CCCHHHHHHHHHHcCCeEECCCCChHHHHHHHHHhhhhcCCCCCce--eccCCHHHHHHHHHHHHHCCC----CEEEEEe
Confidence 788888842 277888877766543 344 45553223 333332 2356788888 8888887
Q ss_pred chhH
Q 037841 338 IPYG 341 (561)
Q Consensus 338 ~~~~ 341 (561)
.+..
T Consensus 179 ~p~~ 182 (298)
T 2rin_A 179 EPHP 182 (298)
T ss_dssp ESST
T ss_pred ccCc
Confidence 7663
No 109
>2de3_A Dibenzothiophene desulfurization enzyme B; alpha-beta, hydrolase; HET: OBP; 1.60A {Rhodococcus SP} PDB: 2de4_A* 2de2_A
Probab=82.47 E-value=2.1 Score=43.30 Aligned_cols=120 Identities=19% Similarity=0.233 Sum_probs=71.0
Q ss_pred CCCcCCHHHHHhCCCeeEEEe-------Cch-----------------------HHHHHHhcCCCc--cceeecCChH--
Q 037841 271 QPTITDVKMLIKRGDNVGYQK-------GSF-----------------------VLGILKQLGFDE--RKLVVYNSPE-- 316 (561)
Q Consensus 271 ~~~I~sl~dL~~~~~~vg~~~-------gs~-----------------------~~~~l~~~~~~~--~~~~~~~s~~-- 316 (561)
..+|++++|| .|++||+.. |+. ...+|++.+.+. .+++.+...+
T Consensus 108 ds~I~s~~DL--kGk~Igv~~~~~~~~~gs~~~~~~~~~~~~~~~~~gs~~~~~~~~~L~~~Gl~~~dv~~v~~~~~~~~ 185 (365)
T 2de3_A 108 DSPITAAADL--AGRRIGVSASAIRILRGQLGDYLELDPWRQTLVALGSWEARALLHTLEHGELGVDDVELVPISSPGVD 185 (365)
T ss_dssp TCSCCSGGGG--TTCEEEECHHHHHHHHTCCTTGGGSCHHHHHHHHTTHHHHHHHHHHHHHTTCCGGGSEEEECCCTTTC
T ss_pred CCCCCCHHHh--CCCeEEeecccccccCCCcccccccchhhhhhhccchhhHHHHHHHHHHcCCCHHHeEEEECCCcccc
Confidence 4569999999 699999975 431 456677766643 3555555432
Q ss_pred -----------------------HHHHHhhccccCCceeEEeecchhHHHHHhcCCcceEEeCccc----ccCceEEEec
Q 037841 317 -----------------------ECHELFQKGSANGGIAAAFEEIPYGKLLVGQHCYKYTMVEPTF----KTAGFGFAFP 369 (561)
Q Consensus 317 -----------------------~~~~~l~~g~~~~gv~a~i~~~~~~~~~l~~~~~~l~~v~~~~----~~~~~~~~~~ 369 (561)
+...+|..|+ +||++...++......+ ...++.+.- ......++++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~G~----vDA~~~~~p~~~~~~~~---g~~~l~~~~~~~~~~~~~~l~~~ 258 (365)
T 2de3_A 186 VPAEQLEESATVKGADLFPDVARGQAAVLASGD----VDALYSWLPWAGELQAT---GARPVVDLGLDERNAYASVWTVS 258 (365)
T ss_dssp CCHHHHHHSSBSSHHHHSTTHHHHHHHHHHSSS----CSEEEEEHHHHHHHHHT---TEEESSCGGGSGGGCEEEEEEEE
T ss_pred ccccccccccccccccccccchhhHHHHHhCCC----cCEEEEcchhHHHHHhC---CCEEEEeCcccCCCCceEEEEEc
Confidence 2688999999 99999887776554432 244443321 1122355665
Q ss_pred C----CCC-Chhh----HHHHHhhccccc-hhHHHHHHHc
Q 037841 370 L----HSP-LVHD----VSKAILSVTEGD-KMKEIEDAWF 399 (561)
Q Consensus 370 k----~sp-l~~~----in~~Il~l~e~G-~~~~i~~kw~ 399 (561)
+ ..| +... +.++...+.++. ...++..+++
T Consensus 259 ~~~~~~~p~~v~~~~~a~~~a~~~~~~~p~~~~~i~~~~~ 298 (365)
T 2de3_A 259 SGLVRQRPGLVQRLVDAAVDAGLWARDHSDAVTSLHAANL 298 (365)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHh
Confidence 3 244 3333 455555555542 4445555554
No 110
>3k6v_A Solute-binding protein MA_0280; MODA, molybdate, periplasmic BIN protein, ABC transporter, transport protein, ligand, metal- protein; HET: CIT; 1.69A {Methanosarcina acetivorans} PDB: 3k6u_A* 3k6w_A 3k6x_A
Probab=82.09 E-value=25 Score=35.21 Aligned_cols=70 Identities=10% Similarity=0.132 Sum_probs=42.7
Q ss_pred HHHHHHHHHC-CCceeEEEEecCCCCCCCCCCHHHHHHHHH-cC-cccEEEeceeeecCcc---eeeeccccccccceEE
Q 037841 85 DVFKAVIQEL-PYAVAYDFVPYGQPDGTSSGSYNDLIYQVF-LG-EFDAAVGDITILLNRS---NYVDFTLPYTESGVSM 158 (561)
Q Consensus 85 dl~~~i~~~l-~f~v~~~~v~~~~~~g~~ngs~~~li~~l~-~g-~~D~~vg~~~it~~R~---~~vdfT~p~~~~~~~i 158 (561)
++.+.+.++. |.++.+.+- .-..++.++. .| .+|+.++.-.-..++. ...+...+|....+++
T Consensus 59 ~l~~~Fe~~~pgv~V~~~~g-----------gSg~l~~qi~e~G~~aDVf~sad~~~~~~l~~~g~~~~~~~~a~n~lVl 127 (354)
T 3k6v_A 59 ELEAEFEAQHPGVDVQREAA-----------GSAQSVRKITELGKKADVLASADYALIPSLMVPEYADWYAAFARNQMIL 127 (354)
T ss_dssp HHHHHHHHHSTTCEEEEEEE-----------CHHHHHHHHHTSCCCCSEEEESSTTHHHHHTTTTTCSCEEEEEECCEEE
T ss_pred HHHHHHHHHCCCcEEEEEeC-----------CHHHHHHHHHhcCCCccEEEECCHHHHHHHHhCCCCCCceEeECCeEEE
Confidence 6777788887 776655432 3346778885 35 6898876321111111 1233456778888999
Q ss_pred EEEccCC
Q 037841 159 IVPIKDS 165 (561)
Q Consensus 159 vvp~~~~ 165 (561)
++|+..+
T Consensus 128 iv~~~~p 134 (354)
T 3k6v_A 128 AYTNESK 134 (354)
T ss_dssp EECTTST
T ss_pred EEECCCc
Confidence 9986643
No 111
>3tmg_A Glycine betaine, L-proline ABC transporter, glycine/betaine/L-proline-binding protein...; ssgcid, structural genomics; 1.90A {Borrelia burgdorferi}
Probab=81.89 E-value=7.1 Score=37.77 Aligned_cols=42 Identities=17% Similarity=0.279 Sum_probs=30.8
Q ss_pred ehHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCcccEEEec
Q 037841 82 FCIDVFKAVIQELPYAVAYDFVPYGQPDGTSSGSYNDLIYQVFLGEFDAAVGD 134 (561)
Q Consensus 82 ~~idl~~~i~~~l~f~v~~~~v~~~~~~g~~ngs~~~li~~l~~g~~D~~vg~ 134 (561)
+...+.+.+.+.+|++|++ ... +-.-+..+|.+|++|+.+..
T Consensus 30 i~~~i~~~~Le~~G~~Ve~--~~~---------~~~~~~~AL~~G~iD~~~e~ 71 (280)
T 3tmg_A 30 AATNVLKVVFEKMGYNAEI--FSV---------TTSIMYQYLASGKIDGTVSS 71 (280)
T ss_dssp HHHHHHHHHHHHTTEEEEE--EEC---------CHHHHHHHHHTTSSSEEEEE
T ss_pred HHHHHHHHHHHHCCCceEE--EEC---------CcHHHHHHHHCCCCcEEEec
Confidence 3456777777889986665 342 34677899999999998763
No 112
>3l6g_A Betaine ABC transporter permease and substrate BI protein; glycine betaine binding, substrate binding domain, venus FLY cell membrane; HET: B3P; 1.90A {Lactococcus lactis} PDB: 3l6h_A
Probab=81.20 E-value=4.7 Score=38.49 Aligned_cols=95 Identities=9% Similarity=0.054 Sum_probs=53.6
Q ss_pred EeeccCCCcCCHHHHHhC--CCeeEEEeCchHHH----HHHhc-CCCccceeecC-ChH----HHHHHhhccccCCceeE
Q 037841 266 TVQQLQPTITDVKMLIKR--GDNVGYQKGSFVLG----ILKQL-GFDERKLVVYN-SPE----ECHELFQKGSANGGIAA 333 (561)
Q Consensus 266 t~~~~~~~I~sl~dL~~~--~~~vg~~~gs~~~~----~l~~~-~~~~~~~~~~~-s~~----~~~~~l~~g~~~~gv~a 333 (561)
.++++. .|+|++||.+. ++.+|+..|..... .++.+ +++. +.... +.. +...++.+|+ +++
T Consensus 89 ~Vp~~~-~i~si~DL~~~~~g~~~g~~~G~~~~~~~~~~l~~y~gL~~--~~~v~~s~~~m~~~l~~A~~~g~----~~v 161 (256)
T 3l6g_A 89 VVPSYM-NVNSIEDLTNQANKTITGIEPGAGVMAASEKTLNSYDNLKD--WKLVPSSSGAMTVALGEAIKQHK----DIV 161 (256)
T ss_dssp EEETTS-CCCBGGGCSSGGGGEEECCCTTCHHHHHHHHHHTTCGGGTT--CEEECCCHHHHHHHHHHHHHTTC----CCC
T ss_pred EECCcc-CCCCHHHHHHhcCCeEEecCCCchhhHHHHHHHHhcCCCCC--eEEecCCHHHHHHHHHHHHHCCC----CEE
Confidence 344443 48999999321 56778877776543 44445 5532 23333 332 2357888898 888
Q ss_pred EeecchhHHHHHhcCCcceEEeCcccc----cCceEEEecCC
Q 037841 334 AFEEIPYGKLLVGQHCYKYTMVEPTFK----TAGFGFAFPLH 371 (561)
Q Consensus 334 ~i~~~~~~~~~l~~~~~~l~~v~~~~~----~~~~~~~~~k~ 371 (561)
+....+....- ++ ++.++.++-. ......+++++
T Consensus 162 ~~~w~p~~~~~--~~--~l~~LeDpk~~~~~~~~~~~vvr~~ 199 (256)
T 3l6g_A 162 ITGWSPHWMFN--KY--DLKYLADPKGTMGTSENINTIVRKG 199 (256)
T ss_dssp EEEEESCTHHH--HS--CEEECBCTTCTTCCCEEEEEEEETT
T ss_pred EEeecCchhhh--hc--CeEEecCCccccCCcceEEEeechh
Confidence 88777665542 23 2566643322 23345666766
No 113
>2czl_A Hypothetical protein TTHA1568; conserved hypothetical protein, extremely thermoph bacteria, structural genomics, NPPSFA; HET: CME TLA XPE; 1.55A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 2dbp_A* 3a3u_A*
Probab=81.17 E-value=3.2 Score=39.55 Aligned_cols=58 Identities=12% Similarity=-0.020 Sum_probs=38.8
Q ss_pred HHHHHhCCCeeEEEeCchHHHHH-HhcCCCccceeecCChHHHHHHhhccccCCceeEEeec-chhHH
Q 037841 277 VKMLIKRGDNVGYQKGSFVLGIL-KQLGFDERKLVVYNSPEECHELFQKGSANGGIAAAFEE-IPYGK 342 (561)
Q Consensus 277 l~dL~~~~~~vg~~~gs~~~~~l-~~~~~~~~~~~~~~s~~~~~~~l~~g~~~~gv~a~i~~-~~~~~ 342 (561)
++|| +|++||+..++....++ +.+ ....+++ +-...+...++..|+ +||++.. .+++.
T Consensus 91 ~~dL--kGk~Ia~~~~~~~~~~ll~~l-l~~~~~~-~~~~~~~~~al~~G~----vDa~~~~~ep~~~ 150 (272)
T 2czl_A 91 LQAL--EGLRVAVPGRHTTAYFLLSLY-AQGFVPV-EVRYDRILPMVAQGE----VEAGLIIHESRFT 150 (272)
T ss_dssp CSCC--TTCEEEESCTTSHHHHHHHHH-CSSCEEE-ECCGGGHHHHHHTTS----SSEEEECTTHHHH
T ss_pred hHHh--CCCEEEeCCCCchHHHHHHHH-hccCcee-ecChHHHHHHHHCCC----CCEEEEecchhhh
Confidence 5678 69999997666655443 332 2222433 335568899999999 9999875 55655
No 114
>3hhf_B Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 2.30A {Neisseria meningitidis serogroup B}
Probab=80.64 E-value=1.7 Score=38.99 Aligned_cols=65 Identities=9% Similarity=0.034 Sum_probs=42.9
Q ss_pred ehHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCcccEEEeceeeecCcceeeeccccccccceEEEEE
Q 037841 82 FCIDVFKAVIQELPYAVAYDFVPYGQPDGTSSGSYNDLIYQVFLGEFDAAVGDITILLNRSNYVDFTLPYTESGVSMIVP 161 (561)
Q Consensus 82 ~~idl~~~i~~~l~f~v~~~~v~~~~~~g~~ngs~~~li~~l~~g~~D~~vg~~~it~~R~~~vdfT~p~~~~~~~ivvp 161 (561)
+-.+++..+.++.+ .+++++...+ . +.+|.+|++|+++....... ..+ -+.++....++++++
T Consensus 21 ~l~~~l~~f~~~~P-~v~l~i~~~~--------~----~~~l~~g~~D~~i~~~~~~~---~~~-~~~~l~~~~~~~v~~ 83 (213)
T 3hhf_B 21 LLAPLAAKFNERYP-HIRLSLVSSE--------G----YINLIERKVDIALRAGELDD---SGL-RARHLFDSRFRVIAS 83 (213)
T ss_dssp THHHHHHHHHHHCT-TEEEEEECCS--------T----THHHHTTSSSEEEECC--CC---SSE-EEEEEEEECEEEEEC
T ss_pred HHHHHHHHHHHHCC-CcEEEEEeCC--------c----HHHHHhCCccEEEEEecCCC---ccc-eEEeeecceEEEEeC
Confidence 55688999999988 4677665211 1 33588999999987432221 222 246778888999988
Q ss_pred cc
Q 037841 162 IK 163 (561)
Q Consensus 162 ~~ 163 (561)
..
T Consensus 84 ~~ 85 (213)
T 3hhf_B 84 PE 85 (213)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 115
>4ef1_A Pheromone COB1/lipoprotein, YAEC family; periplasmic methionine binding protein, NLPA lipoprotein, ST genomics; 1.90A {Enterococcus faecalis} PDB: 4ef2_A*
Probab=80.26 E-value=21 Score=33.74 Aligned_cols=38 Identities=16% Similarity=0.126 Sum_probs=28.8
Q ss_pred HHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCcccEEEe
Q 037841 86 VFKAVIQELPYAVAYDFVPYGQPDGTSSGSYNDLIYQVFLGEFDAAVG 133 (561)
Q Consensus 86 l~~~i~~~l~f~v~~~~v~~~~~~g~~ngs~~~li~~l~~g~~D~~vg 133 (561)
.++...++.|+ +.+++.+. +|.....+|.+|++|+...
T Consensus 21 ~v~~~l~k~Gi--~veiv~F~--------dy~~pN~AL~~G~iD~n~f 58 (246)
T 4ef1_A 21 HVKPLLEKEGV--KLEVTTYT--------DYVLPNKALESGDIDANYF 58 (246)
T ss_dssp HHHHHHHHTTE--EEEEEECS--------SSSHHHHHHHHTSCSEEEE
T ss_pred HHHHHHHhcCC--EEEEEEeC--------CchhHHHHHHCCCCCEEec
Confidence 34556667786 67777776 6788888999999999754
No 116
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=78.52 E-value=4.4 Score=43.10 Aligned_cols=56 Identities=9% Similarity=0.061 Sum_probs=46.6
Q ss_pred cCccchhHHHHHHHhhhcc-c-cccccchhHHHHHHHHHHHHHHHHHhHhhheeeeEe
Q 037841 212 RHQVGTSFWFSFSTMVFSQ-R-ERVISNLARFVVIVWYFVVLVLTQSYTASLTSLLTV 267 (561)
Q Consensus 212 ~~~~~~~~~~~~~~l~~~~-~-~~~~s~~~Ril~~~w~~~~lil~~~Yta~LtS~Lt~ 267 (561)
-.++..++|+++.++...| + ..|.+..+|++.++++++++++.+.+.|.+.+.+..
T Consensus 373 F~s~~~a~y~~~vT~TTvGYGDi~P~t~~gr~f~~~~~l~G~~~l~l~iavI~~~f~~ 430 (514)
T 2r9r_B 373 FPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNY 430 (514)
T ss_dssp CSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred ccchhhhhheeeeEEEecccCCCCCCCcchHhhehhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578899999999998776 3 356788899999999999999999999988875543
No 117
>2hxw_A Major antigenic peptide PEB3; periplasmic binding protein, N-glycosylation, structural genomics; HET: FLC; 1.60A {Campylobacter jejuni} PDB: 3fjm_A 3fjg_A 3fir_A* 3fj7_A*
Probab=76.31 E-value=15 Score=33.60 Aligned_cols=68 Identities=12% Similarity=0.043 Sum_probs=40.1
Q ss_pred HHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCcccEEEeceeeecCc--ce---eee--ccccccccce
Q 037841 84 IDVFKAVIQELPYAVAYDFVPYGQPDGTSSGSYNDLIYQVFLGEFDAAVGDITILLNR--SN---YVD--FTLPYTESGV 156 (561)
Q Consensus 84 idl~~~i~~~l~f~v~~~~v~~~~~~g~~ngs~~~li~~l~~g~~D~~vg~~~it~~R--~~---~vd--fT~p~~~~~~ 156 (561)
-++++.+.++.|.++++.+ ++-..++.++. +.+|+++.+-....++ .+ .++ -..++....+
T Consensus 16 ~~~~~~F~~~~gi~V~~~~-----------~~s~~l~~~l~-~~~Dv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 83 (237)
T 2hxw_A 16 KDIANKYSEKTGVKVNVNF-----------GPQATWFEKAK-KDADILFGASDQSALAIASDFGKDFNVSKIKPLYFREA 83 (237)
T ss_dssp HHHHHHHHHHHCCCEEEEE-----------SSHHHHHHHHH-HHCSEEEESSHHHHHHHHTTSGGGCCGGGCEEEEEEEE
T ss_pred HHHHHHHHHHhCceEEEEe-----------CChHHHHHHhc-cCCCEEEeCCHHHHHHHHHhcccccCcccccccccCce
Confidence 3677888888787655532 24567888888 8999988754211100 11 122 1234566667
Q ss_pred EEEEEcc
Q 037841 157 SMIVPIK 163 (561)
Q Consensus 157 ~ivvp~~ 163 (561)
+++++..
T Consensus 84 ~l~~~~~ 90 (237)
T 2hxw_A 84 IILTQKG 90 (237)
T ss_dssp EEEESTT
T ss_pred EEEEeCC
Confidence 7777654
No 118
>1nh8_A ATP phosphoribosyltransferase; prtase, de novo His biosynthesis, PRPP, structural genomics, PSI, protei structure initiative; HET: AMP HIS; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: c.94.1.1 d.58.5.3 PDB: 1nh7_A*
Probab=75.26 E-value=10 Score=37.09 Aligned_cols=100 Identities=12% Similarity=0.056 Sum_probs=63.2
Q ss_pred cCCHHHHHhCCCeeEEEeCchHHHHHHhcCCCcccee-ecCChHHHHHHhhccccCCceeEEeecchhHHHHHhcCCcce
Q 037841 274 ITDVKMLIKRGDNVGYQKGSFVLGILKQLGFDERKLV-VYNSPEECHELFQKGSANGGIAAAFEEIPYGKLLVGQHCYKY 352 (561)
Q Consensus 274 I~sl~dL~~~~~~vg~~~gs~~~~~l~~~~~~~~~~~-~~~s~~~~~~~l~~g~~~~gv~a~i~~~~~~~~~l~~~~~~l 352 (561)
+++++|| .+.+|+...-...++||.+.+.+ .+++ ...+.|-. -..|- .|++++-.......-++. +
T Consensus 121 ~~~~~~l--~~~RIATkYp~l~r~yf~~~gi~-~~Ii~l~GsvE~a---P~~Gl----ADaIvDiVsTG~TLraNg---L 187 (304)
T 1nh8_A 121 NWTTADL--AGMRIATAYPNLVRKDLATKGIE-ATVIRLDGAVEIS---VQLGV----ADAIADVVGSGRTLSQHD---L 187 (304)
T ss_dssp CCCGGGG--TTCEEEESCHHHHHHHHHHHTCC-CEEEECSSCCTHH---HHTTS----CSEEEEEESSSHHHHHTT---E
T ss_pred cCChHHh--CCCEEEeCcHHHHHHHHHHCCCe-EEEEECCCceeec---cCCCc----ccEEEEEeCChHHHHHCc---C
Confidence 5778888 68899987777889999887776 3444 44455533 23455 788887766665544333 5
Q ss_pred EEeCcccccCceEEEecCCCC-C--hhhHHHHHhhcc
Q 037841 353 TMVEPTFKTAGFGFAFPLHSP-L--VHDVSKAILSVT 386 (561)
Q Consensus 353 ~~v~~~~~~~~~~~~~~k~sp-l--~~~in~~Il~l~ 386 (561)
.++++.+......++.++.+. . .+.++..+.++.
T Consensus 188 ~~i~e~I~~SsA~LI~n~~s~~~~k~~~i~~l~~rl~ 224 (304)
T 1nh8_A 188 VAFGEPLCDSEAVLIERAGTDGQDQTEARDQLVARVQ 224 (304)
T ss_dssp EEEEEEEEEECEEEEEEC--------CHHHHHHHHHH
T ss_pred EEcccEEEEEEEEEEEccccchhhhHHHHHHHHHHHH
Confidence 566666666677788888762 2 235666666554
No 119
>2xxp_A CPS2A; replication, peptidoglycan, LCP, LYTR; HET: DSL PEG; 1.69A {Streptococcus pneumoniae} PDB: 3tep_A* 3tfl_A* 2xxq_A* 3tel_A* 4de8_A*
Probab=72.61 E-value=4.1 Score=41.71 Aligned_cols=69 Identities=14% Similarity=0.058 Sum_probs=53.2
Q ss_pred cCCCcCCHHHHHhCCCeeEEEeCchHHHHHHh-------cCCCccceeecCChHHHHHHhhccccCCceeEEeecchhHH
Q 037841 270 LQPTITDVKMLIKRGDNVGYQKGSFVLGILKQ-------LGFDERKLVVYNSPEECHELFQKGSANGGIAAAFEEIPYGK 342 (561)
Q Consensus 270 ~~~~I~sl~dL~~~~~~vg~~~gs~~~~~l~~-------~~~~~~~~~~~~s~~~~~~~l~~g~~~~gv~a~i~~~~~~~ 342 (561)
-..+|++++|| +| ||++.+.....+.+. .+. ..+.+.|++..+++.+|.+|+ ++|++.+..+..
T Consensus 24 kds~i~sl~DL--kg--vgv~~~~~~~~~~~~~~~i~~~~g~-~~~~~~y~~~~~a~~aL~nG~----vDAiv~~~~~~~ 94 (398)
T 2xxp_A 24 ADSEIENVTQL--TS--VTAPTGTDNENIQKLLADIKSSQNT-DLTVNQSSSYLAAYKSLIAGE----TKAIVLNSVFEN 94 (398)
T ss_dssp TTCSCCSGGGC--SE--EEECTTTSHHHHHHHHHHHHHHSCC-CCEEEECSSHHHHHHHHHTTS----CSCEEEEHHHHH
T ss_pred CCCCcCCHHHh--cC--eeeECCCCHHHHHHHHHHHHHhhCC-cceEEecCCHHHHHHHHHcCC----CCEEEEchHHHH
Confidence 34679999999 45 999988776654432 122 246889999999999999999 999999988877
Q ss_pred HHHhc
Q 037841 343 LLVGQ 347 (561)
Q Consensus 343 ~~l~~ 347 (561)
.+-..
T Consensus 95 ~le~~ 99 (398)
T 2xxp_A 95 IIELE 99 (398)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 66543
No 120
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=72.47 E-value=3.7 Score=39.81 Aligned_cols=63 Identities=11% Similarity=0.184 Sum_probs=48.8
Q ss_pred CccchhHHHHHHHhhhcc-cc-ccccc-------hhHHHHHHHHHHHHHHHHHhHhhheeeeEeeccCCCcC
Q 037841 213 HQVGTSFWFSFSTMVFSQ-RE-RVISN-------LARFVVIVWYFVVLVLTQSYTASLTSLLTVQQLQPTIT 275 (561)
Q Consensus 213 ~~~~~~~~~~~~~l~~~~-~~-~~~s~-------~~Ril~~~w~~~~lil~~~Yta~LtS~Lt~~~~~~~I~ 275 (561)
-++.+++|+++-++...| ++ .|.+. ..|++.++|+++++.+.+...+.+++.+...+....+.
T Consensus 200 ~s~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~~~~~l~~~~~ 271 (280)
T 3ukm_A 200 WNFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHELKKFRKMFY 271 (280)
T ss_dssp CCHHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHTTC
T ss_pred CchhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 357899999999998776 33 34443 36999999999999999999999998877665554443
No 121
>1p99_A Hypothetical protein PG110; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Staphylococcus aureus subsp} SCOP: c.94.1.1
Probab=70.89 E-value=32 Score=33.43 Aligned_cols=36 Identities=14% Similarity=0.151 Sum_probs=26.6
Q ss_pred HHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCcccEEE
Q 037841 87 FKAVIQELPYAVAYDFVPYGQPDGTSSGSYNDLIYQVFLGEFDAAV 132 (561)
Q Consensus 87 ~~~i~~~l~f~v~~~~v~~~~~~g~~ngs~~~li~~l~~g~~D~~v 132 (561)
++...++.|+ +.+++.+. +|.....+|.+|++|+..
T Consensus 56 ~~~~~~~~G~--~Ve~~~f~--------~~~~~~~AL~~G~iD~~~ 91 (295)
T 1p99_A 56 VKELAKKDDI--DVEIKHFS--------DYNLPNKALNDGDIDMNA 91 (295)
T ss_dssp HHHHHGGGTC--CEEEEECS--------STTSHHHHHHTTSSSEEE
T ss_pred HHHHHHHcCC--eEEEEEeC--------ChHHHHHHHHcCCCCEEc
Confidence 3445556687 55666665 678899999999999975
No 122
>3szp_A Transcriptional regulator, LYSR family; winged helix-turn helix, DNA-binding, transcription factor; 2.20A {Vibrio cholerae} PDB: 3t1b_B
Probab=70.81 E-value=5.3 Score=37.71 Aligned_cols=80 Identities=11% Similarity=0.189 Sum_probs=51.5
Q ss_pred CceEEEEecCCCCCcceEEEeeCCCCCCCceEEEehHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCc
Q 037841 48 EKKLRIGVPVKKGFSYFVNVTIDPKTQEPTSVTGFCIDVFKAVIQELPYAVAYDFVPYGQPDGTSSGSYNDLIYQVFLGE 127 (561)
Q Consensus 48 g~~LrVgv~~~~~~~pf~~~~~d~~~~~~~~~~G~~idl~~~i~~~l~f~v~~~~v~~~~~~g~~ngs~~~li~~l~~g~ 127 (561)
.+.|+||+. +.+ ...+-.+++..+.+..+ .+.+++...+ . ..++.+|+
T Consensus 90 ~~~l~Ig~~--~~~-----------------~~~~l~~~l~~f~~~~P-~v~i~~~~~~--------~----~~~l~~~~ 137 (291)
T 3szp_A 90 SGRIRISAP--SNL-----------------TKRMMMPMFNAFMEKYP-DIHIELMMSN--------Q----ADDLDPTE 137 (291)
T ss_dssp CEEEEEEEE--TTT-----------------HHHHTHHHHHHHHHHCT-TEEEEEEEEC--------S----CSCCCGGG
T ss_pred ceEEEEecc--HHH-----------------HHHHHHHHHHHHHHHCC-CeEEEEEEec--------C----ccCccccC
Confidence 467999997 332 12355688999999987 4677766422 1 23678899
Q ss_pred ccEEEeceeeecCcceeeeccccccccceEEEEEcc
Q 037841 128 FDAAVGDITILLNRSNYVDFTLPYTESGVSMIVPIK 163 (561)
Q Consensus 128 ~D~~vg~~~it~~R~~~vdfT~p~~~~~~~ivvp~~ 163 (561)
+|+++...... ...+ -..++....++++++..
T Consensus 138 ~Dl~i~~~~~~---~~~l-~~~~l~~~~~~~v~~~~ 169 (291)
T 3szp_A 138 WDVIFRVGPQR---DSSL-IARKIGEVKDILVASPQ 169 (291)
T ss_dssp CSEEEEESCCC---CTTC-EEEEEEEECEEEEECHH
T ss_pred ceEEEEecCCC---CCCe-eEEEecccceEEEECHH
Confidence 99998743221 1222 24567778888888744
No 123
>3muq_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.05A {Vibrio parahaemolyticus}
Probab=69.59 E-value=71 Score=29.83 Aligned_cols=75 Identities=11% Similarity=0.046 Sum_probs=49.8
Q ss_pred EEehHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCcccEEEeceeeecCcc---eeeeccccccccce
Q 037841 80 TGFCIDVFKAVIQELPYAVAYDFVPYGQPDGTSSGSYNDLIYQVFLGEFDAAVGDITILLNRS---NYVDFTLPYTESGV 156 (561)
Q Consensus 80 ~G~~idl~~~i~~~l~f~v~~~~v~~~~~~g~~ngs~~~li~~l~~g~~D~~vg~~~it~~R~---~~vdfT~p~~~~~~ 156 (561)
+|+.-+|+..+.++.|.++.+.+. +-..++.++.+|.+|+.+..-....... ....-..++....+
T Consensus 18 ~~ll~~L~~~Fek~~gv~V~~~~~-----------gSg~ll~qi~~G~aDv~isa~~~~~~~l~~~g~~~~~~~~a~N~l 86 (237)
T 3muq_A 18 SGLLDYLLPQFEKDTGYKVDVIAA-----------GTGKALKMGENGDVDLVMTHAPKAEGTFVEKGYGVLPRKLMYNDF 86 (237)
T ss_dssp HTHHHHHHHHHHHHHCCEEEEEEE-----------CHHHHHHHHHTTSSSEEEECCHHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred hhHHHHHHHHHHHHhCceEEEEEc-----------ChHHHHHHHhcCCCCEEEecCchhHHHHHhcCCccccEEEEeCCE
Confidence 356678889999888865555442 3457889999999999876332222111 01112467888899
Q ss_pred EEEEEccCC
Q 037841 157 SMIVPIKDS 165 (561)
Q Consensus 157 ~ivvp~~~~ 165 (561)
++++|..++
T Consensus 87 VlV~P~~~P 95 (237)
T 3muq_A 87 VIVGPKADP 95 (237)
T ss_dssp EEEECTTCT
T ss_pred EEEEeCCCh
Confidence 999997654
No 124
>3u65_B TP33 protein; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; HET: EDO; 1.40A {Treponema pallidum subsp} PDB: 4di4_B* 4di3_D*
Probab=69.22 E-value=9.3 Score=37.91 Aligned_cols=102 Identities=14% Similarity=0.115 Sum_probs=62.9
Q ss_pred CCcCCHHHHHhCCCeeEE-EeC-chHHHHHHhcCCCccceeecCChHHHHHHhhccccCCceeEEeecchhHHHH-HhcC
Q 037841 272 PTITDVKMLIKRGDNVGY-QKG-SFVLGILKQLGFDERKLVVYNSPEECHELFQKGSANGGIAAAFEEIPYGKLL-VGQH 348 (561)
Q Consensus 272 ~~I~sl~dL~~~~~~vg~-~~g-s~~~~~l~~~~~~~~~~~~~~s~~~~~~~l~~g~~~~gv~a~i~~~~~~~~~-l~~~ 348 (561)
.+|++++|| +|.+|-+ ..+ ....+.++.+|-.. +.. ...|...+|++|. +|+.......+... +.+-
T Consensus 145 kpI~s~~Dl--kGlKiR~~~~~s~~~~~~~~alGa~p---v~m-~~~Evy~ALq~Gv----vDg~e~~~~~~~~~~~~Ev 214 (328)
T 3u65_B 145 APYASLGQL--KKQTIALSSLDSSVLGTCFRICGFDI---KDA-PNARLAPLLKAGS----IDGFLSVHLFTWATGFYRY 214 (328)
T ss_dssp SCCSSHHHH--HHSEEEECSTTHHHHHHHHHHHTCEE---EEC-TTCCHHHHHHHTS----CCEEEECHHHHHHSCGGGG
T ss_pred CCCCCHHHH--CCCEEEECCCCChHHHHHHHHCCCee---eec-CHHHHHHHHHcCc----cceEecCHHHHHHcchhhc
Confidence 579999999 6999887 444 56677888877532 233 4557889999999 99998776554221 1122
Q ss_pred CcceEEeCcccccCceEEEecCC--CCChhhHHHHHhhc
Q 037841 349 CYKYTMVEPTFKTAGFGFAFPLH--SPLVHDVSKAILSV 385 (561)
Q Consensus 349 ~~~l~~v~~~~~~~~~~~~~~k~--spl~~~in~~Il~l 385 (561)
++ +...... ......+++.+. .-|-+...++|.+.
T Consensus 215 ~k-y~~~~~h-~~~~~~~~~n~~~w~~L~~e~q~~i~~a 251 (328)
T 3u65_B 215 IS-YALDTKI-CPAVIGMLISDGSWARIPSRYHDAMLQA 251 (328)
T ss_dssp CC-EEECSCC-EEEEEEEEEEHHHHTTSCGGGHHHHHHH
T ss_pred Cc-EEEEcCc-cccceEEEEcHHHHhcCCHHHHHHHHHH
Confidence 43 3333332 233456777775 22555555555443
No 125
>4edp_A ABC transporter, substrate-binding protein; clostridium PERF ATCC 13124, center for structural genomics of infectious DI csgid; 1.85A {Clostridium perfringens}
Probab=67.45 E-value=59 Score=31.30 Aligned_cols=81 Identities=11% Similarity=-0.050 Sum_probs=51.2
Q ss_pred ecCChHHHHHHhhccccCCceeEEeecchhHHHHHhcCCcceEEe-Cc-ccccCceEEEecCCCCChhhHHHHHhhcccc
Q 037841 311 VYNSPEECHELFQKGSANGGIAAAFEEIPYGKLLVGQHCYKYTMV-EP-TFKTAGFGFAFPLHSPLVHDVSKAILSVTEG 388 (561)
Q Consensus 311 ~~~s~~~~~~~l~~g~~~~gv~a~i~~~~~~~~~l~~~~~~l~~v-~~-~~~~~~~~~~~~k~spl~~~in~~Il~l~e~ 388 (561)
.+.+..+..+.+..|+ +++.+.....+..+.....+ +.++ +. -......+++++++++-.+.--+.|..+...
T Consensus 215 ~~~~~~~~~~~f~~G~----~a~~~~~~~~~~~~~~~~~~-~~~~~P~~g~~~~~~~~~i~~~s~~~~~A~~fi~~l~s~ 289 (351)
T 4edp_A 215 TYSKSSDLANMFSNGE----IVAAVASDFAFGTISKAKPE-VINVIPESGTYLNFNTININKNSKNKDLAYEFINYALSK 289 (351)
T ss_dssp EECCHHHHHHHHHTTS----CSEEEEEHHHHHHHHHHCTT-CEEECCTTCCBEEEEEEEEBTTCSCHHHHHHHHHHHTSH
T ss_pred ccCChHHHHHHHHcCC----EEEEecCcHHHHHHHhcCCC-eeeeCCCCCcccceeeEEEECCCCCHHHHHHHHHHhcCH
Confidence 4456788889999999 88888776666655554432 3333 22 1122335789999998777777777666654
Q ss_pred chhHHHHH
Q 037841 389 DKMKEIED 396 (561)
Q Consensus 389 G~~~~i~~ 396 (561)
.....+.+
T Consensus 290 e~q~~~~~ 297 (351)
T 4edp_A 290 EVQEKTAK 297 (351)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333433
No 126
>3cfz_A UPF0100 protein MJ1186; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.70A {Methanocaldococcus jannaschii}
Probab=66.39 E-value=63 Score=30.73 Aligned_cols=70 Identities=14% Similarity=0.140 Sum_probs=43.0
Q ss_pred HHHHHHHHHHC-CCceeEEEEecCCCCCCCCCCHHHHHHHHHc-Cc-ccEEEeceeeec---CcceeeeccccccccceE
Q 037841 84 IDVFKAVIQEL-PYAVAYDFVPYGQPDGTSSGSYNDLIYQVFL-GE-FDAAVGDITILL---NRSNYVDFTLPYTESGVS 157 (561)
Q Consensus 84 idl~~~i~~~l-~f~v~~~~v~~~~~~g~~ngs~~~li~~l~~-g~-~D~~vg~~~it~---~R~~~vdfT~p~~~~~~~ 157 (561)
-++++.+.++. |.+|++ .. ++-..++.++.+ |. +|+.+..-.... .....++...||....++
T Consensus 20 ~~l~~~F~~~~~gi~V~~--~~---------~~s~~l~~~i~~~g~~~Dv~~~a~~~~~~~l~~~gl~~~~~~~~~~~lv 88 (292)
T 3cfz_A 20 EEYEKMFEKEHPNVDVER--EP---------AGSVACVRKIIDLGKKADILASADYSLIPQMMMPKYADWYVMFARNEIV 88 (292)
T ss_dssp HHHHHHHHHHCTTEEEEE--EE---------ECHHHHHHHHHTSCCCCSEEEESSTTHHHHHTTTTTCSCCEEEEECCEE
T ss_pred HHHHHHHHHHCCCceEEE--Ee---------CCHHHHHHHHHhcCCCCcEEEECChHHHHHHHhCCCccceeeeEeccEE
Confidence 36777777774 754444 33 245678889988 75 999876321101 111223455677888899
Q ss_pred EEEEccC
Q 037841 158 MIVPIKD 164 (561)
Q Consensus 158 ivvp~~~ 164 (561)
+++++..
T Consensus 89 i~~~~~~ 95 (292)
T 3cfz_A 89 LAYTDKS 95 (292)
T ss_dssp EEECTTS
T ss_pred EEEcCCC
Confidence 9988653
No 127
>4ecf_A ABC-type phosphate transport system, periplasmic; ABC transporter, phosphate transport receptor; HET: MSE; 1.55A {Lactobacillus brevis}
Probab=66.11 E-value=78 Score=29.79 Aligned_cols=72 Identities=13% Similarity=0.029 Sum_probs=48.9
Q ss_pred ehHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCcccEEEeceeeecCc---ceeeeccccccccceEE
Q 037841 82 FCIDVFKAVIQELPYAVAYDFVPYGQPDGTSSGSYNDLIYQVFLGEFDAAVGDITILLNR---SNYVDFTLPYTESGVSM 158 (561)
Q Consensus 82 ~~idl~~~i~~~l~f~v~~~~v~~~~~~g~~ngs~~~li~~l~~g~~D~~vg~~~it~~R---~~~vdfT~p~~~~~~~i 158 (561)
+.-++++.+.++.+ .+++.+.. ++-.+.+.+|.+|++|+++.+....... ...+ ...|+..+.+++
T Consensus 17 ~l~~~~~~f~~~~P-~v~i~v~~---------~~S~~~~~~l~~g~~Dig~~~~~~~~~e~~~~~~l-~~~~i~~d~lvv 85 (264)
T 4ecf_A 17 LVEAAGEQYTGEHL-GTFINVQG---------GGTGTGLSQIQEGAVQIGNSDLFAGEQKGINARQL-VDHRVAVVGITP 85 (264)
T ss_dssp HHHHHHHHHHHHST-TEEEEEEE---------ECHHHHHHHHHHTSSSEEEESSCGGGSTTCCGGGE-ECCEEEEEEEEE
T ss_pred HHHHHHHHHHHHCC-CceEEEEe---------CCCHHHHHHHHcCCCchhhccCCCChhHHhhccCC-EEEEEEEEEEEE
Confidence 34467888888875 35555544 2467889999999999998755443320 1112 367888999999
Q ss_pred EEEccC
Q 037841 159 IVPIKD 164 (561)
Q Consensus 159 vvp~~~ 164 (561)
+++...
T Consensus 86 vv~~~~ 91 (264)
T 4ecf_A 86 IVNKKV 91 (264)
T ss_dssp EECTTS
T ss_pred EEcCCC
Confidence 998554
No 128
>3fd3_A Chromosome replication initiation inhibitor prote; structural genomics, LYSR, PSI-2, structure initiative; HET: MSE P33 PG4; 1.70A {Agrobacterium tumefaciens str}
Probab=61.15 E-value=80 Score=27.20 Aligned_cols=67 Identities=9% Similarity=-0.084 Sum_probs=41.5
Q ss_pred EehHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCcccEEEeceeeecCcceeeeccccccccceEEEE
Q 037841 81 GFCIDVFKAVIQELPYAVAYDFVPYGQPDGTSSGSYNDLIYQVFLGEFDAAVGDITILLNRSNYVDFTLPYTESGVSMIV 160 (561)
Q Consensus 81 G~~idl~~~i~~~l~f~v~~~~v~~~~~~g~~ngs~~~li~~l~~g~~D~~vg~~~it~~R~~~vdfT~p~~~~~~~ivv 160 (561)
.+-.+++..+.++.+ +++++... +..++.+.+.+|..|+++..-... ...+ -..++....+++++
T Consensus 15 ~~l~~~l~~f~~~~~--v~l~l~~~---------~~~~~~~~l~~g~d~~~i~~~~~~---~~~l-~~~~l~~~~~~~v~ 79 (208)
T 3fd3_A 15 TWFLDAVSKFTGGSD--YLVNIAVD---------DQDHTVEWLRGGRVLAAVTAHDKP---VQGC-RVTPLGVLRYHATA 79 (208)
T ss_dssp TTHHHHHHHHHHTSS--CEEEEEEC---------CSSCHHHHHHTTSCSEEEESCCSC---CTTC-EEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHhhcC--eEEEEEeC---------CcHhHHHHHhcCcceEEEecCCCC---CCCc-eEEEccceEEEEEE
Confidence 356788999999885 56666552 345688899999555544321111 1222 24567777788887
Q ss_pred Ec
Q 037841 161 PI 162 (561)
Q Consensus 161 p~ 162 (561)
+.
T Consensus 80 ~~ 81 (208)
T 3fd3_A 80 SP 81 (208)
T ss_dssp CH
T ss_pred Ch
Confidence 63
No 129
>3lr1_A Tungstate ABC transporter, periplasmic tungstate- binding protein; the tungstate ABC transporter, structural genomics, PSI, MCSG; 1.80A {Geobacter sulfurreducens}
Probab=59.83 E-value=6.8 Score=37.00 Aligned_cols=76 Identities=11% Similarity=0.021 Sum_probs=51.6
Q ss_pred EEehHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCcccEEEeceeeecCcc---eeeeccccccccce
Q 037841 80 TGFCIDVFKAVIQELPYAVAYDFVPYGQPDGTSSGSYNDLIYQVFLGEFDAAVGDITILLNRS---NYVDFTLPYTESGV 156 (561)
Q Consensus 80 ~G~~idl~~~i~~~l~f~v~~~~v~~~~~~g~~ngs~~~li~~l~~g~~D~~vg~~~it~~R~---~~vdfT~p~~~~~~ 156 (561)
+|+.-+|+..+.++.|.++.+.+. +-..++.++.+|.+|+.+..-....+.. ....-..++....+
T Consensus 18 ~~ll~~L~~~Fek~~gv~V~~~~~-----------gSg~ll~qi~~G~aDV~isa~~~~~~~l~~~g~~~~~~~~~~n~l 86 (236)
T 3lr1_A 18 SGLLKVLLPPFEKKNNVKVDVIAV-----------GTGQALKLGEAGDVDVVFVHARKLEDKFVADGFGVNRKDVMYNDF 86 (236)
T ss_dssp HCHHHHHHHHHHHHHTCEEEEEEE-----------CHHHHHHHHHTTSCSEEEECCHHHHHHHHHTTSEEEEEEEEECCE
T ss_pred hHHHHHHHHHHHHHhCCeEEEEEc-----------ChHHHHHHHhcCCCCEEeecCchhHHHHHhcCCCcceEEEEcCcE
Confidence 466778899999888765555442 4567899999999999876433222111 01122458888999
Q ss_pred EEEEEccCCC
Q 037841 157 SMIVPIKDSK 166 (561)
Q Consensus 157 ~ivvp~~~~~ 166 (561)
++++|+.++.
T Consensus 87 VlV~P~~~P~ 96 (236)
T 3lr1_A 87 VIVGPKNDPA 96 (236)
T ss_dssp EEEECTTCTT
T ss_pred EEEEECCChh
Confidence 9999977654
No 130
>2qsx_A Putative transcriptional regulator, LYSR family; the putative transcriptional regulator, PSI-2, structure initiative, MCSG; 1.64A {Vibrio parahaemolyticus}
Probab=59.68 E-value=56 Score=29.09 Aligned_cols=79 Identities=14% Similarity=0.195 Sum_probs=45.7
Q ss_pred CceEEEEecCCCCCcceEEEeeCCCCCCCceEEEehHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCc
Q 037841 48 EKKLRIGVPVKKGFSYFVNVTIDPKTQEPTSVTGFCIDVFKAVIQELPYAVAYDFVPYGQPDGTSSGSYNDLIYQVFLGE 127 (561)
Q Consensus 48 g~~LrVgv~~~~~~~pf~~~~~d~~~~~~~~~~G~~idl~~~i~~~l~f~v~~~~v~~~~~~g~~ngs~~~li~~l~~g~ 127 (561)
.+.||||++ +.+ ...+-..++..+.++++ .+++++...+ + . + ++.+|+
T Consensus 18 ~G~lrI~~~--~~~-----------------~~~~L~~~l~~f~~~~P-~i~l~l~~~~--------~-~--~-~l~~~~ 65 (218)
T 2qsx_A 18 QELLVVDVT--PSF-----------------ASLWLVPNINDFHQRHP-NIRVKILTGD--------G-A--V-KNIHGE 65 (218)
T ss_dssp -CEEEEEEC--HHH-----------------HHHTHHHHHHHHHHHCT-TCEEEEEECC--------S-C--C------C
T ss_pred CCcEEEecC--HHH-----------------HHHHHHHHHHHHHHHCC-CeEEEEEecC--------C-c--c-cccCCC
Confidence 367999996 332 12355678999999998 4777776633 1 1 3 688999
Q ss_pred ccEEEeceeeecCcceeeeccccccccceEEEEEc
Q 037841 128 FDAAVGDITILLNRSNYVDFTLPYTESGVSMIVPI 162 (561)
Q Consensus 128 ~D~~vg~~~it~~R~~~vdfT~p~~~~~~~ivvp~ 162 (561)
+|+++..-.. ..... -+.++....++++++.
T Consensus 66 ~Dlai~~~~~-~~~~~---~~~~l~~~~~~~v~sp 96 (218)
T 2qsx_A 66 SDLHVRCLPL-STHYE---YSQLLCEETLLLIGNT 96 (218)
T ss_dssp CSEEEEEEEC-CSCCS---SEEEEEEEEEEEEEET
T ss_pred CCEEEEcCCC-CCCCc---cceeccCCCEEEEECh
Confidence 9999752100 11111 4567777788888773
No 131
>3cfx_A UPF0100 protein MA_0280; ABC transporter, binding protein, molybdate, tungstate, LIGA unknown function, transport protein; 1.60A {Methanosarcina acetivorans}
Probab=59.46 E-value=1.2e+02 Score=28.72 Aligned_cols=70 Identities=9% Similarity=0.046 Sum_probs=43.6
Q ss_pred HHHHHHHHHHC-CCceeEEEEecCCCCCCCCCCHHHHHHHHHc-Cc-ccEEEecee--eec-CcceeeeccccccccceE
Q 037841 84 IDVFKAVIQEL-PYAVAYDFVPYGQPDGTSSGSYNDLIYQVFL-GE-FDAAVGDIT--ILL-NRSNYVDFTLPYTESGVS 157 (561)
Q Consensus 84 idl~~~i~~~l-~f~v~~~~v~~~~~~g~~ngs~~~li~~l~~-g~-~D~~vg~~~--it~-~R~~~vdfT~p~~~~~~~ 157 (561)
-++++.+.++. |.+|++ .. ++-..++.++.+ |. +|+.+..-. +.. .....++...||....++
T Consensus 20 ~~l~~~F~~~~~gi~V~~--~~---------~~s~~l~~~i~~~g~~~Dv~~~a~~~~~~~l~~~gl~~~~~~~~~~~l~ 88 (296)
T 3cfx_A 20 EELEAEFEAQHPGVDVQR--EA---------AGSAQSVRKITELGKKADVLASADYALIPSLMVPEYADWYAAFARNQMI 88 (296)
T ss_dssp HHHHHHHHHHSTTCEEEE--EE---------CCHHHHHHHHHTSCCCCSEEEESSTTHHHHHTTTTTCSCEEEEEECCEE
T ss_pred HHHHHHHHHHCCCceEEE--Ee---------CchHHHHHHHHhCCCCCcEEEECChhhHHHHHhCCCccceeeeEeeeEE
Confidence 36778888874 765554 33 245678889988 75 999876321 110 111223455678888899
Q ss_pred EEEEccC
Q 037841 158 MIVPIKD 164 (561)
Q Consensus 158 ivvp~~~ 164 (561)
+++++..
T Consensus 89 i~~~~~~ 95 (296)
T 3cfx_A 89 LAYTNES 95 (296)
T ss_dssp EEECTTS
T ss_pred EEEeCCC
Confidence 9988653
No 132
>3cij_A UPF0100 protein AF_0094; archaeal periplasmic binding protein, unknown function, metal binding protein, transport protein; 1.07A {Archaeoglobus fulgidus} PDB: 2ons_A 2onk_E 2onr_A
Probab=59.11 E-value=1.2e+02 Score=28.64 Aligned_cols=70 Identities=11% Similarity=0.084 Sum_probs=44.0
Q ss_pred HHHHHHHHHHC-CCceeEEEEecCCCCCCCCCCHHHHHHHHHc-Cc-ccEEEecee--eec-CcceeeeccccccccceE
Q 037841 84 IDVFKAVIQEL-PYAVAYDFVPYGQPDGTSSGSYNDLIYQVFL-GE-FDAAVGDIT--ILL-NRSNYVDFTLPYTESGVS 157 (561)
Q Consensus 84 idl~~~i~~~l-~f~v~~~~v~~~~~~g~~ngs~~~li~~l~~-g~-~D~~vg~~~--it~-~R~~~vdfT~p~~~~~~~ 157 (561)
-++++.+.++. |.+|++.+ ++...++.++.+ |. +|+.+..-. +.. .....++...||....++
T Consensus 20 ~~l~~~F~~~~~gi~V~~~~-----------~~s~~l~~~i~~~g~~~Dv~~~a~~~~~~~l~~~gl~~~~~~~~~~~lv 88 (295)
T 3cij_A 20 KAFKRAFEEKHPNVEVQTEA-----------AGSAATIRKVTELGRKADVIATADYTLIQKMMYPEFANWTIMFAKNQIV 88 (295)
T ss_dssp HHHHHHHHHHCTTCEEEEEE-----------ECHHHHHHHHHTSCCCCSEEEESSTHHHHHHHTTTTCCCCEEEEECCEE
T ss_pred HHHHHHHHHHCCCceEEEEe-----------CcHHHHHHHHHhCCCCCCEEEEcChhhHHHHHhCCCcceeeEEEeeeEE
Confidence 36777777774 76555543 245678889988 75 999876321 111 111223456778888899
Q ss_pred EEEEccC
Q 037841 158 MIVPIKD 164 (561)
Q Consensus 158 ivvp~~~ 164 (561)
+++++..
T Consensus 89 l~~~~~~ 95 (295)
T 3cij_A 89 LAYRNDS 95 (295)
T ss_dssp EEECTTS
T ss_pred EEEeCCC
Confidence 9998654
No 133
>3isp_A HTH-type transcriptional regulator RV1985C/MT2039; ROD shaped structure, DNA binding domain, regulatory domain, DNA-binding; 2.70A {Mycobacterium tuberculosis}
Probab=58.94 E-value=30 Score=32.80 Aligned_cols=54 Identities=13% Similarity=-0.117 Sum_probs=36.1
Q ss_pred ceeEEEEecCCCCCCCCCCHHHHHHHHHcCcccEEEeceeeecCcceeeeccccccccceEEEEEcc
Q 037841 97 AVAYDFVPYGQPDGTSSGSYNDLIYQVFLGEFDAAVGDITILLNRSNYVDFTLPYTESGVSMIVPIK 163 (561)
Q Consensus 97 ~v~~~~v~~~~~~g~~ngs~~~li~~l~~g~~D~~vg~~~it~~R~~~vdfT~p~~~~~~~ivvp~~ 163 (561)
.+.+++.. ++..++++.|.+|++|+++...... ...+ -..++....++++++..
T Consensus 119 ~v~i~~~~---------~~~~~~~~~l~~g~~D~~i~~~~~~---~~~l-~~~~l~~~~~~~v~~~~ 172 (303)
T 3isp_A 119 DVLLDVRI---------EDQDHSARLLREGVAMGAVTTERNP---VPGC-RVHPLGEMRYLPVASRP 172 (303)
T ss_dssp SEEEEEEE---------CCHHHHHHHHHTTSCSEEEESCCSC---CTTE-EEEEEEEEEEEEEECHH
T ss_pred cceEEEEe---------cChHHHHHHHHcCcceEEEecCCCC---CCCe-EEEEccceeEEEEecch
Confidence 35666655 3577899999999999987633221 1222 24667778888888754
No 134
>3r6u_A Choline-binding protein; substrate binding protein, ABC-transporter, extracellular, transport protein; 1.61A {Bacillus subtilis} SCOP: c.94.1.0 PDB: 3ppq_A 3ppo_A* 3ppp_A 3ppn_A 3ppr_A*
Probab=57.87 E-value=1e+02 Score=29.63 Aligned_cols=90 Identities=12% Similarity=0.113 Sum_probs=50.1
Q ss_pred CcCCHHHHHhCC--CeeEEEe------CchHHHHHHhcCCCccceeecCChHHHHHHhhccccCCceeEEeecchhHHHH
Q 037841 273 TITDVKMLIKRG--DNVGYQK------GSFVLGILKQLGFDERKLVVYNSPEECHELFQKGSANGGIAAAFEEIPYGKLL 344 (561)
Q Consensus 273 ~I~sl~dL~~~~--~~vg~~~------gs~~~~~l~~~~~~~~~~~~~~s~~~~~~~l~~g~~~~gv~a~i~~~~~~~~~ 344 (561)
.|+|++||.+.. ..+|... |.-...+.+.++++-..+...+ .-...+++.+|+ ++++....+....
T Consensus 130 ~l~sisDL~~~~~~~~~g~~~ef~~r~G~G~~~l~~~YGl~~~~~~~~~-~g~~~~A~~~~~----~~v~~~wsp~~~~- 203 (284)
T 3r6u_A 130 HLETVSDVKKWAPQLKLGVDNYWMKLKGNGYQDFTKTYGMTFGGTYPMQ-IGLVYDAVKSGK----MDIVLAYSTDGRI- 203 (284)
T ss_dssp TCCBSGGGGGGGGGCEEEECTTGGGCSSSSHHHHHHHHCCCCSEEEECC-GGGHHHHHHHTS----CSEEEEETTCHHH-
T ss_pred CCCCHHHHHhhhhceeeccCcccccCchhHHHHHHHHcCCCcccccccC-HHHHHHHHHcCC----CeEEEEeCCCchh-
Confidence 389999997653 3566643 2323344555666433344443 335678999999 8887776655433
Q ss_pred HhcCCcceEEeCcc---cccCceEEEecCC
Q 037841 345 VGQHCYKYTMVEPT---FKTAGFGFAFPLH 371 (561)
Q Consensus 345 l~~~~~~l~~v~~~---~~~~~~~~~~~k~ 371 (561)
.++ ++.++.+. |.......+++++
T Consensus 204 -~~~--dL~~LeD~k~~fp~~~v~~vvr~~ 230 (284)
T 3r6u_A 204 -KSY--GLKMLKDDKQFFPPYDCSPVVPEK 230 (284)
T ss_dssp -HHT--TEEECBCTTCCSCCCBEEEEEEHH
T ss_pred -hcC--CceEcCCCcccCCccceeEEEcHH
Confidence 222 24555332 2333345566655
No 135
>3mz1_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative, MI center for STR uctural genomics, MCSG; 1.88A {Sinorhizobium meliloti}
Probab=57.53 E-value=31 Score=32.22 Aligned_cols=66 Identities=12% Similarity=0.053 Sum_probs=41.6
Q ss_pred EehHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCcccEEEeceeeecCcceeeeccccccccceEEEE
Q 037841 81 GFCIDVFKAVIQELPYAVAYDFVPYGQPDGTSSGSYNDLIYQVFLGEFDAAVGDITILLNRSNYVDFTLPYTESGVSMIV 160 (561)
Q Consensus 81 G~~idl~~~i~~~l~f~v~~~~v~~~~~~g~~ngs~~~li~~l~~g~~D~~vg~~~it~~R~~~vdfT~p~~~~~~~ivv 160 (561)
.+-..++..+.++.+ .+.+++...+ .. ..+.+|++|+++....... ..+ -..++....+++++
T Consensus 101 ~~l~~~l~~f~~~~P-~v~i~~~~~~--------~~----~~l~~~~~Dl~i~~~~~~~---~~l-~~~~l~~~~~~~v~ 163 (300)
T 3mz1_A 101 LVIIPALPEFHKKYP-DIQIDLGVSD--------RT----IDYLAENVDCAIRAGTLTD---QSL-IARRITEMKFVACA 163 (300)
T ss_dssp HTHHHHHHHHHHHCT-TEEEEEEECC--------CC------CCCTTCCEEEEESSCSC---TTS-EEEEEEEECEEEEE
T ss_pred HHHHHHHHHHHHHCC-CcEEEEEeCC--------Cc----ccccccCCcEEEEeccCCC---CCe-EEEEeecceeEEEE
Confidence 355678888889888 4677765422 11 2477899999987433221 222 23567778888888
Q ss_pred Ecc
Q 037841 161 PIK 163 (561)
Q Consensus 161 p~~ 163 (561)
+..
T Consensus 164 ~~~ 166 (300)
T 3mz1_A 164 SRD 166 (300)
T ss_dssp EHH
T ss_pred CHH
Confidence 754
No 136
>1h3d_A ATP-phosphoribosyltransferase; hisitidine biosynthesis, glycosyltransferase; HET: AMP TLA; 2.7A {Escherichia coli} SCOP: c.94.1.1 d.58.5.3 PDB: 1q1k_A*
Probab=57.20 E-value=46 Score=32.39 Aligned_cols=100 Identities=14% Similarity=0.073 Sum_probs=63.1
Q ss_pred cCCHHHHHhCCCeeEEEeCchHHHHHHhcCCCccceeecCChHHHHHHhhccccCCceeEEeecchhHHHHHhcCCcceE
Q 037841 274 ITDVKMLIKRGDNVGYQKGSFVLGILKQLGFDERKLVVYNSPEECHELFQKGSANGGIAAAFEEIPYGKLLVGQHCYKYT 353 (561)
Q Consensus 274 I~sl~dL~~~~~~vg~~~gs~~~~~l~~~~~~~~~~~~~~s~~~~~~~l~~g~~~~gv~a~i~~~~~~~~~l~~~~~~l~ 353 (561)
+.++++| .|.+|+...-...++||++.+.+..-+....+.|-. -..|- .|++++-.......-++. +.
T Consensus 116 ~~~~~~l--~g~RIATkyp~l~~~yf~~~gi~~~ii~l~GsvE~a---P~~Gl----ADaIvDivsTG~TLraNg---L~ 183 (299)
T 1h3d_A 116 WDGPLSL--NGKRIATSYPHLLKRYLDQKGISFKSCLLNGSVEVA---PRAGL----ADAICDLVSTGATLEANG---LR 183 (299)
T ss_dssp CCCGGGG--TTCEEEESCHHHHHHHHHHHTCCCEEEECSSCTTHH---HHTTS----CSEEEEEESSCHHHHHTT---EE
T ss_pred CCChHHh--CCCEEEeCcHHHHHHHHHHcCCcEEEEECCCceeec---cCCCc----cceEEecccCHHHHHHCC---CE
Confidence 3567777 688999877778899998877765444444555533 23455 788877766655544433 45
Q ss_pred EeCcccccCceEEEecCCCC--C-hhhHHHHHhhcc
Q 037841 354 MVEPTFKTAGFGFAFPLHSP--L-VHDVSKAILSVT 386 (561)
Q Consensus 354 ~v~~~~~~~~~~~~~~k~sp--l-~~~in~~Il~l~ 386 (561)
++. .+......++.++.+. . .+.++..+.++.
T Consensus 184 ~ie-~I~~SsA~LI~n~~s~~~~k~~~i~~l~~rl~ 218 (299)
T 1h3d_A 184 EVE-VIYRSKACLIQRDGEMEESKQQLIDKLLTRIQ 218 (299)
T ss_dssp EEE-EEEEECEEEEEESSCCCHHHHHHHHHHHHHHH
T ss_pred EeE-EEEeeEEEEEEeccccChhHHHHHHHHHHHHH
Confidence 564 4455556677778762 2 245666666664
No 137
>3tqw_A Methionine-binding protein; transport and binding proteins, transport protein; HET: MSE; 2.00A {Coxiella burnetii}
Probab=56.65 E-value=75 Score=29.81 Aligned_cols=34 Identities=15% Similarity=0.218 Sum_probs=25.3
Q ss_pred HHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCcccEEEe
Q 037841 90 VIQELPYAVAYDFVPYGQPDGTSSGSYNDLIYQVFLGEFDAAVG 133 (561)
Q Consensus 90 i~~~l~f~v~~~~v~~~~~~g~~ngs~~~li~~l~~g~~D~~vg 133 (561)
+.++.|+ +.+++.|. +|.....+|.+|++|+-..
T Consensus 25 l~~~~Gi--~veiv~F~--------Dy~~pN~AL~~G~iDaN~f 58 (240)
T 3tqw_A 25 ALNRYGL--HVNIITFS--------DYNTPNEALADGSVDANMF 58 (240)
T ss_dssp HHHHHCC--CEEEEEES--------CTTSHHHHHHTTSCSEEEE
T ss_pred HHHhcCC--eEEEEEeC--------ChHhHHHHHHcCCcCeecc
Confidence 3336787 55666665 6888899999999998754
No 138
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=54.02 E-value=14 Score=27.05 Aligned_cols=18 Identities=39% Similarity=0.482 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 037841 427 LIAGIAAILALIIFLAVF 444 (561)
Q Consensus 427 ~il~~g~~lallvfl~E~ 444 (561)
+++|.+..+.+++-+.-+
T Consensus 12 ivlGg~~~lll~~glcI~ 29 (70)
T 2klu_A 12 IVLGGVAGLLLFIGLGIF 29 (70)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHH
Confidence 344444433333333333
No 139
>3o66_A Glycine betaine/carnitine/choline ABC transporter; structural genomics, PSI-2, protein structure initiative; HET: PGE; 1.86A {Staphylococcus aureus subsp} SCOP: c.94.1.0
Probab=52.24 E-value=77 Score=30.40 Aligned_cols=66 Identities=18% Similarity=0.216 Sum_probs=40.7
Q ss_pred CcCCHHHHHhCC--CeeEEEe------CchHHHHHHhcCCCccceeecCChHHHHHHhhccccCCceeEEeecchhHHH
Q 037841 273 TITDVKMLIKRG--DNVGYQK------GSFVLGILKQLGFDERKLVVYNSPEECHELFQKGSANGGIAAAFEEIPYGKL 343 (561)
Q Consensus 273 ~I~sl~dL~~~~--~~vg~~~------gs~~~~~l~~~~~~~~~~~~~~s~~~~~~~l~~g~~~~gv~a~i~~~~~~~~ 343 (561)
.|+|++||.+.. ..+|... |.-...+.+.++++-..+...+ .-...+++.+|+ ++++....+....
T Consensus 129 ~l~sisDL~~~~~~~~~g~~~ef~~r~gdG~~~l~~~Ygl~~~~~~~~d-~g~~~~A~~~~~----~~v~~~wsp~~~~ 202 (282)
T 3o66_A 129 HLETVSDLAKHSKDLRLGMDSSWMNRKGDGYEGFKKEYGFDFGTVRPMQ-IGLVYDALNTEK----LDVALGYSTDGRI 202 (282)
T ss_dssp TCSBSGGGTTTGGGCEEEEEGGGCC--CCSHHHHHHHHCCCCSEEEEEC-GGGHHHHHHTTS----CSEEEEETTCHHH
T ss_pred CCCCHHHHHhcccceEEecCcccccCchhHHHHHHHHcCCCCccccccC-HHHHHHHHHcCC----CeEEEEeCCCchh
Confidence 389999997543 3677754 2333344455666433344443 336788999999 8887776665433
No 140
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=50.57 E-value=28 Score=34.59 Aligned_cols=60 Identities=7% Similarity=0.042 Sum_probs=49.2
Q ss_pred cCccchhHHHHHHHhhhcc-cc-ccc--cchhHHHHHHHHHHHHHHHHHhHhhheeeeEeeccC
Q 037841 212 RHQVGTSFWFSFSTMVFSQ-RE-RVI--SNLARFVVIVWYFVVLVLTQSYTASLTSLLTVQQLQ 271 (561)
Q Consensus 212 ~~~~~~~~~~~~~~l~~~~-~~-~~~--s~~~Ril~~~w~~~~lil~~~Yta~LtS~Lt~~~~~ 271 (561)
..++..+|||++.++.-.| +. .|. ...+|++..+-.++++++.+.-++-+.+-++.+...
T Consensus 89 ~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~srp~~r 152 (340)
T 3sya_A 89 LNGFVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQPKKR 152 (340)
T ss_dssp CCSTTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGG
T ss_pred ccCHHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhc
Confidence 3578899999999999777 32 343 577999999999999999999999988888776654
No 141
>3cvg_A Putative metal binding protein; PSI-II, NYSGXRC, periplasmic, structural GENO protein structure initiative; 1.97A {Coccidioides immitis}
Probab=47.95 E-value=17 Score=35.04 Aligned_cols=75 Identities=12% Similarity=0.045 Sum_probs=48.5
Q ss_pred EehHHHHHHHHHH---C--CCceeEEEEecCCCCCCCCCCHHHHHHHHHcCcccEEEeceeeecCcc--eeeec-cc-cc
Q 037841 81 GFCIDVFKAVIQE---L--PYAVAYDFVPYGQPDGTSSGSYNDLIYQVFLGEFDAAVGDITILLNRS--NYVDF-TL-PY 151 (561)
Q Consensus 81 G~~idl~~~i~~~---l--~f~v~~~~v~~~~~~g~~ngs~~~li~~l~~g~~D~~vg~~~it~~R~--~~vdf-T~-p~ 151 (561)
.+.-++++.+.++ . + .+++++.. ++...++.+|.+|++|+++..-....... ..+.+ .. ++
T Consensus 33 ~~lp~ll~~F~~~~~~~~~P-~v~v~l~~---------~~s~~l~~~l~~G~~Dl~i~~~~~~~~~l~~~~~~~~~~~~l 102 (294)
T 3cvg_A 33 GLVKELADAFIKSKVDSGSA-PFKVAWYK---------SDTTVTINYLKDGIVDVGITYSPVAERISIKHGISESPSYYA 102 (294)
T ss_dssp THHHHHHHHHHHHHHSCC----CEEEEEE---------CCHHHHHHHHHTTSCSEEEESCHHHHHHHHHTTSBCSSCEEE
T ss_pred HHHHHHHHHHHhhhcccCCC-CeEEEEEe---------CCHHHHHHHHHcCCCcEEEEcCchhhhHHHhCCcccceeeeE
Confidence 3556788889888 7 3 34666555 46789999999999999876321111100 11112 24 78
Q ss_pred cccceEEEEEccCC
Q 037841 152 TESGVSMIVPIKDS 165 (561)
Q Consensus 152 ~~~~~~ivvp~~~~ 165 (561)
....+++++|...+
T Consensus 103 ~~d~lvlv~~~~hp 116 (294)
T 3cvg_A 103 FRDHFMLIGPPSNP 116 (294)
T ss_dssp EEEEEEEEECTTCT
T ss_pred EeccEEEEecCCCh
Confidence 88899999986654
No 142
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=47.43 E-value=16 Score=35.88 Aligned_cols=53 Identities=19% Similarity=0.276 Sum_probs=45.7
Q ss_pred CccchhHHHHHHHhhhcc--ccccccchhHHHHHHHHHHHHHHHHHhHhhheeee
Q 037841 213 HQVGTSFWFSFSTMVFSQ--RERVISNLARFVVIVWYFVVLVLTQSYTASLTSLL 265 (561)
Q Consensus 213 ~~~~~~~~~~~~~l~~~~--~~~~~s~~~Ril~~~w~~~~lil~~~Yta~LtS~L 265 (561)
-++.+++|+++.++.--| ...|.+..+|++.+++.++++.+...+.+.+.+.+
T Consensus 114 w~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l 168 (309)
T 3um7_A 114 WDLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRL 168 (309)
T ss_dssp CSHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367889999999998777 34679999999999999999999999998887765
No 143
>3fxb_A Trap dicarboxylate transporter, DCTP subunit; periplasmic substrate binding protein, selectivity helix, TR membrane; HET: 4CS; 2.90A {Silicibacter pomeroyi dss-3}
Probab=45.48 E-value=30 Score=34.05 Aligned_cols=102 Identities=9% Similarity=-0.053 Sum_probs=64.7
Q ss_pred CCcCCHHHHHhCCCeeEEEeCchHHHHHHhcCCCccceeecCChHHHHHHhhccccCCceeEEeecchhHHHH-HhcCCc
Q 037841 272 PTITDVKMLIKRGDNVGYQKGSFVLGILKQLGFDERKLVVYNSPEECHELFQKGSANGGIAAAFEEIPYGKLL-VGQHCY 350 (561)
Q Consensus 272 ~~I~sl~dL~~~~~~vg~~~gs~~~~~l~~~~~~~~~~~~~~s~~~~~~~l~~g~~~~gv~a~i~~~~~~~~~-l~~~~~ 350 (561)
.+|++++|| +|.+|-+..+....+.++.+|-.. +.. ...|...+|++|. +|+........... +.+-++
T Consensus 144 kpI~s~~Dl--kGlKiR~~~~~~~~~~~~alGa~p---v~m-~~~Evy~ALq~Gv----vDg~e~~~~~~~~~~~~Ev~k 213 (326)
T 3fxb_A 144 TPVTTCSDL--DEVKFRVMTNPLLVESYKAFGATP---TPL-PWGEVYGGLQTNV----IQGQENPTFFLYSTKIYEVTD 213 (326)
T ss_dssp SCCSSGGGS--TTCEEEECSCHHHHHHHHHHTSEE---EEC-CGGGHHHHHHTTS----CCEEEEEHHHHHHTTGGGSCS
T ss_pred CCCCChHHh--CCCEEEecCCHHHHHHHHHcCCee---eec-CHHHHHHHHHcCC----cceEecCHHHHHhccHhhhcc
Confidence 579999999 799998876677788888887532 333 5678899999999 99988765443211 112254
Q ss_pred ceEEeCcccccCceEEEecCCCC--ChhhHHHHHhhc
Q 037841 351 KYTMVEPTFKTAGFGFAFPLHSP--LVHDVSKAILSV 385 (561)
Q Consensus 351 ~l~~v~~~~~~~~~~~~~~k~sp--l~~~in~~Il~l 385 (561)
+....... .....+++.+..- |-+...++|.+.
T Consensus 214 -y~~~~~~~-~~~~~~~~n~~~w~~L~~e~q~~i~~a 248 (326)
T 3fxb_A 214 -YITYAGHN-NFTTAVMANKDFYDGLSAEDQQLVQNA 248 (326)
T ss_dssp -EEEECCCC-EEEEEEEEEHHHHHHSCHHHHHHHHHH
T ss_pred -eeEEcCcc-ccceEEEEeHHHHhcCCHHHHHHHHHH
Confidence 33333322 2334567776622 555555555543
No 144
>4euo_A ABC transporter, substrate binding protein (polya; class D of PBP, GABA-binding, transport protein; 1.28A {Agrobacterium tumefaciens} PDB: 4eq7_A
Probab=45.29 E-value=2.1e+02 Score=27.18 Aligned_cols=86 Identities=10% Similarity=-0.054 Sum_probs=49.0
Q ss_pred ceeecCChHHHHHHhhccccCCceeEEeecchhHHHHHhcCCcceEEeCcccccCceEEEecCCCCChhhHHHHHhhccc
Q 037841 308 KLVVYNSPEECHELFQKGSANGGIAAAFEEIPYGKLLVGQHCYKYTMVEPTFKTAGFGFAFPLHSPLVHDVSKAILSVTE 387 (561)
Q Consensus 308 ~~~~~~s~~~~~~~l~~g~~~~gv~a~i~~~~~~~~~l~~~~~~l~~v~~~~~~~~~~~~~~k~spl~~~in~~Il~l~e 387 (561)
++..+.+..+..+.+.+|+ +++.+...........+.. .+.++.+--.....+++++|+++=.+.--+.|.-+..
T Consensus 175 ~~~~~~~~~~~~~~~~~G~----~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~i~k~s~~~e~A~~fi~fl~s 249 (320)
T 4euo_A 175 DIIWWSGGAQSQQLIASAE----APFGSVWNGRMTALEQSGV-KVETSWAQNITAADSLVVPKGTKNKDAAMKFIALATS 249 (320)
T ss_dssp GEEEECSHHHHHHHHHTTS----SCEEEEEHHHHHHHHHTTC-CCEEEEEEEEEEEEEEECBTTCSCHHHHHHHHHHHTS
T ss_pred ceeEeCCCchHHHHHHcCC----EEEEEeecHHHHHHHhCCC-CeEEEecCceeecceEEEECCCCCHHHHHHHHHHHhC
Confidence 3456667778889999999 7777765544433333332 2333322222223478999999866655556655554
Q ss_pred cchhHHHHHHHc
Q 037841 388 GDKMKEIEDAWF 399 (561)
Q Consensus 388 ~G~~~~i~~kw~ 399 (561)
. ..+....+..
T Consensus 250 ~-e~q~~~~~~~ 260 (320)
T 4euo_A 250 A-QAQADMATAT 260 (320)
T ss_dssp H-HHHHHHHHHH
T ss_pred H-HHHHHHHHhc
Confidence 3 4444444433
No 145
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=44.65 E-value=32 Score=33.67 Aligned_cols=53 Identities=13% Similarity=0.175 Sum_probs=40.2
Q ss_pred ccchhHHHHHHHhhhcc-cc-ccccchhH------HHHHHHHHHHHHHHHHhHhhheeeeE
Q 037841 214 QVGTSFWFSFSTMVFSQ-RE-RVISNLAR------FVVIVWYFVVLVLTQSYTASLTSLLT 266 (561)
Q Consensus 214 ~~~~~~~~~~~~l~~~~-~~-~~~s~~~R------il~~~w~~~~lil~~~Yta~LtS~Lt 266 (561)
++.+++|+++-++.-.| ++ .|.+..+| ++.++|+++++.+.++-.+.+.+.+.
T Consensus 224 ~~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~ 284 (309)
T 3um7_A 224 SKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLR 284 (309)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999998776 33 44555555 69999999999888887777666553
No 146
>3cg1_A UPF0100 protein PF0080; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.60A {Pyrococcus furiosus} PDB: 3cg3_A
Probab=44.48 E-value=2.1e+02 Score=26.93 Aligned_cols=69 Identities=19% Similarity=0.215 Sum_probs=43.0
Q ss_pred HHHHHHH---HH-CCCceeE--EEEecCCCCCCCCCCHHHHHHHHHc-C-cccEEEeceeeecCc---ceeeeccccccc
Q 037841 85 DVFKAVI---QE-LPYAVAY--DFVPYGQPDGTSSGSYNDLIYQVFL-G-EFDAAVGDITILLNR---SNYVDFTLPYTE 153 (561)
Q Consensus 85 dl~~~i~---~~-l~f~v~~--~~v~~~~~~g~~ngs~~~li~~l~~-g-~~D~~vg~~~it~~R---~~~vdfT~p~~~ 153 (561)
++++.+. ++ .|.+|++ .+ ++-.+++.++.+ | .+|+++..-....++ ....+...||..
T Consensus 21 ~~~~~F~~~~~~~~gi~V~~~~~~-----------~~s~~l~~~i~~~g~~~Dv~~~~~~~~~~~l~~~g~~~~~~~~~~ 89 (296)
T 3cg1_A 21 EVEKEFSEYAERNLGIKVSFQDEA-----------SGSVMAVRKVTDLGRKADVIGVADYTLIPQLLIPNYTDFYVLFAT 89 (296)
T ss_dssp HHHHHHHHHHHHHHSCCEEEEEEE-----------ECHHHHHHHHHTSCCCCSEEEESSTTHHHHHTTTTTCSCCEEEEE
T ss_pred HHHHHHHHHHHhCCCceEEEEeec-----------CCHHHHHHHHHhCCCCCCEEEECChhHHHHHhcCCCCCcceeccc
Confidence 5777877 76 6876665 33 245678888887 5 599987632111111 112245678888
Q ss_pred cceEEEEEccC
Q 037841 154 SGVSMIVPIKD 164 (561)
Q Consensus 154 ~~~~ivvp~~~ 164 (561)
..++++++...
T Consensus 90 ~~~vi~~~~~~ 100 (296)
T 3cg1_A 90 NEIVIAFTDKS 100 (296)
T ss_dssp CCEEEEECTTS
T ss_pred ccEEEEEcCCC
Confidence 88999987543
No 147
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=42.70 E-value=31 Score=33.05 Aligned_cols=58 Identities=17% Similarity=0.262 Sum_probs=40.8
Q ss_pred cCccchhHHHHHHHhhhcc-c-c--cccc----chhHHHHHHHHHHHHHHHHHhHhhheeeeEeec
Q 037841 212 RHQVGTSFWFSFSTMVFSQ-R-E--RVIS----NLARFVVIVWYFVVLVLTQSYTASLTSLLTVQQ 269 (561)
Q Consensus 212 ~~~~~~~~~~~~~~l~~~~-~-~--~~~s----~~~Ril~~~w~~~~lil~~~Yta~LtS~Lt~~~ 269 (561)
-.++..++|..+.++...+ + . .|.. ...+++.++.++.++++.+.++|-+.+.+....
T Consensus 178 F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~~ 243 (285)
T 3rvy_A 178 FGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAILN 243 (285)
T ss_dssp HSSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578899999999998776 3 2 2322 234677777777889999999999998776543
No 148
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=42.46 E-value=53 Score=32.65 Aligned_cols=60 Identities=17% Similarity=0.128 Sum_probs=49.6
Q ss_pred cCccchhHHHHHHHhhhcc-cc-c--cccchhHHHHHHHHHHHHHHHHHhHhhheeeeEeeccC
Q 037841 212 RHQVGTSFWFSFSTMVFSQ-RE-R--VISNLARFVVIVWYFVVLVLTQSYTASLTSLLTVQQLQ 271 (561)
Q Consensus 212 ~~~~~~~~~~~~~~l~~~~-~~-~--~~s~~~Ril~~~w~~~~lil~~~Yta~LtS~Lt~~~~~ 271 (561)
..++..+|||++.++.-.| +. . +.+..+++++.+-.+.++++.+.-++-+.+-++.+...
T Consensus 92 ~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~srp~~r 155 (343)
T 3spc_A 92 VNGFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMARPKKR 155 (343)
T ss_dssp CCSHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCC
T ss_pred cCCHHHHhheeeeeeEeecCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence 3578899999999999777 33 2 35788999999999999999999999888888777654
No 149
>2vd3_A ATP phosphoribosyltransferase; metal-binding, glycosyltransferase, HISG, histidine, magnesi transferase; HET: HIS; 2.45A {Methanobacterium thermoautotrophicum}
Probab=41.41 E-value=45 Score=32.23 Aligned_cols=100 Identities=14% Similarity=0.090 Sum_probs=60.7
Q ss_pred cCCHHHHHhCCCeeEEEeCchHHHHHHhcCCCccceeecCChHHHHHHhhccccCCceeEEeecchhHHHHHhcCCcceE
Q 037841 274 ITDVKMLIKRGDNVGYQKGSFVLGILKQLGFDERKLVVYNSPEECHELFQKGSANGGIAAAFEEIPYGKLLVGQHCYKYT 353 (561)
Q Consensus 274 I~sl~dL~~~~~~vg~~~gs~~~~~l~~~~~~~~~~~~~~s~~~~~~~l~~g~~~~gv~a~i~~~~~~~~~l~~~~~~l~ 353 (561)
+++++||. .+.+|+...-...++||.+.+.+-.-+....+.|-. -..|- .|++++-.......-++. +.
T Consensus 106 ~~~~~~l~-~~~RIATkyp~l~~~yf~~~gi~~~ii~l~GsvE~a---p~~Gl----ADaIvDivsTG~TLraNg---L~ 174 (289)
T 2vd3_A 106 IRGPEDIP-RGAVIATEFPGITENYLREHGIDAEVVELTGSTEIA---PFIGV----ADLITDLSSTGTTLRMNH---LR 174 (289)
T ss_dssp CCSGGGCC-TTCEEEESCHHHHHHHHHHTTCCCEEEECSSCGGGT---TTTTS----CSEEEEEESSTHHHHHTT---EE
T ss_pred CCCHHHhc-CCCEEEeCcHHHHHHHHHHcCCcEEEEECCCceeec---cCCCc----ccEEEEEeCChHHHHHCC---CE
Confidence 46677772 367898877778899998877754333344455532 33455 788888776666554443 45
Q ss_pred EeCcccccCceEEEecCCC-CC-hhhHHHHHhhc
Q 037841 354 MVEPTFKTAGFGFAFPLHS-PL-VHDVSKAILSV 385 (561)
Q Consensus 354 ~v~~~~~~~~~~~~~~k~s-pl-~~~in~~Il~l 385 (561)
.+ +.+......++.++.+ +. .+.++..+.++
T Consensus 175 ~i-e~I~~ssA~LI~n~~s~~~k~~~i~~l~~rl 207 (289)
T 2vd3_A 175 VI-DTILESSVKLIANRESYATKSGIIEELRTGI 207 (289)
T ss_dssp EE-EEEEEECEEEEECHHHHHHSHHHHHHHHHHH
T ss_pred Ee-EEEEeeEEEEEEccchhhhHHHHHHHHHHHH
Confidence 56 4444555567777765 22 23455555554
No 150
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=41.25 E-value=36 Score=22.89 Aligned_cols=11 Identities=9% Similarity=0.039 Sum_probs=4.4
Q ss_pred HHHHHHHhhcc
Q 037841 441 LAVFVGQHRNV 451 (561)
Q Consensus 441 l~E~~~~~~~~ 451 (561)
++.+++++|++
T Consensus 30 ~~~~~~RRr~~ 40 (44)
T 2ks1_B 30 GIGLFMRRRHI 40 (44)
T ss_dssp HHHHHHHTTTC
T ss_pred HHHHHhhhhHh
Confidence 33344444433
No 151
>3kn3_A Putative periplasmic protein; alpha-beta structure, periplasmic binding protein fold, STRU genomics, PSI-2, protein structure initiative; HET: GSH CIT; 2.41A {Wolinella succinogenes}
Probab=35.08 E-value=17 Score=34.40 Aligned_cols=75 Identities=9% Similarity=-0.090 Sum_probs=49.2
Q ss_pred EEehHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCcccEEEeceeeecCcc---eeeeccccccccce
Q 037841 80 TGFCIDVFKAVIQELPYAVAYDFVPYGQPDGTSSGSYNDLIYQVFLGEFDAAVGDITILLNRS---NYVDFTLPYTESGV 156 (561)
Q Consensus 80 ~G~~idl~~~i~~~l~f~v~~~~v~~~~~~g~~ngs~~~li~~l~~g~~D~~vg~~~it~~R~---~~vdfT~p~~~~~~ 156 (561)
+|+--+|...+.+..|.++.+.+. .-..++.++.+|.+|+.+..-....+.. ....-..++....+
T Consensus 18 s~ll~eL~~~Fek~~gv~V~~~~~-----------gSg~ll~qi~~G~aDVfisa~~~~~~~l~~~G~~~~~~~~a~N~L 86 (242)
T 3kn3_A 18 TGLLDVLAPAYKKDTGVDLKWVAV-----------GTGNALKLGENCDVDVVFVHAPKVELEYVEKGFGIDRTPVMYNDF 86 (242)
T ss_dssp HTHHHHHHHHHHHHHSCEEEEEEE-----------CHHHHHHHHHTTCCSEEEECCHHHHHHHHHHTSEEEEEEEECSCE
T ss_pred chHHHHHHHHHHHHhCCeEEEEEc-----------CcHHHHHHHhcCCCCEEEecChHhHHHHHhcCCCccceEEEcceE
Confidence 355667888888888875555542 3568899999999999876332222111 01112357888899
Q ss_pred EEEEEccCC
Q 037841 157 SMIVPIKDS 165 (561)
Q Consensus 157 ~ivvp~~~~ 165 (561)
++++|+.++
T Consensus 87 VLV~P~~~P 95 (242)
T 3kn3_A 87 VIIGNPSFK 95 (242)
T ss_dssp EEEECTHHH
T ss_pred EEEEeCCCc
Confidence 999997654
No 152
>2b4l_A Glycine betaine-binding protein; substrate-binding protein, closed liganded, ABC-transporter, compatible solutes, transport protein; 2.00A {Bacillus subtilis} PDB: 2b4m_A* 3chg_D
Probab=33.25 E-value=64 Score=30.70 Aligned_cols=58 Identities=16% Similarity=0.220 Sum_probs=39.0
Q ss_pred CCceEEEEecCCCCCcceEEEeeCCCCCCCceEEEehHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcC
Q 037841 47 NEKKLRIGVPVKKGFSYFVNVTIDPKTQEPTSVTGFCIDVFKAVIQELPYAVAYDFVPYGQPDGTSSGSYNDLIYQVFLG 126 (561)
Q Consensus 47 ~g~~LrVgv~~~~~~~pf~~~~~d~~~~~~~~~~G~~idl~~~i~~~l~f~v~~~~v~~~~~~g~~ngs~~~li~~l~~g 126 (561)
.+++++||.. +|..- -+...++..+.+.+||++++.. .+ + .-+..+|.+|
T Consensus 163 ~~~~I~ig~~---~w~e~----------------~~~~~v~~~~Le~~Gy~Ve~~~--~~--------~-~~~~~al~~G 212 (268)
T 2b4l_A 163 KGDKINLAYV---AWDSE----------------IASTNVIGKVLEDLGYEVTLTQ--VE--------A-GPMWTAIATG 212 (268)
T ss_dssp SSCEEEEEEC---CCHHH----------------HHHHHHHHHHHHHHTCEEEEEE--CC--------T-THHHHHHHHT
T ss_pred cCcceEEEcc---CccHH----------------HHHHHHHHHHHHHcCCceEEEE--CC--------h-HHHHHHHHCC
Confidence 4678999985 45211 1234566677778899777654 33 3 5667889999
Q ss_pred cccEEEec
Q 037841 127 EFDAAVGD 134 (561)
Q Consensus 127 ~~D~~vg~ 134 (561)
++|+.+..
T Consensus 213 ~iD~~~e~ 220 (268)
T 2b4l_A 213 SADASLSA 220 (268)
T ss_dssp SSSEEEEE
T ss_pred CCeEEehh
Confidence 99998664
No 153
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=32.11 E-value=1.1e+02 Score=20.41 Aligned_cols=21 Identities=10% Similarity=0.159 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcc
Q 037841 431 IAAILALIIFLAVFVGQHRNV 451 (561)
Q Consensus 431 ~g~~lallvfl~E~~~~~~~~ 451 (561)
+|.++.+++.+.-++|.||++
T Consensus 19 VGvll~vi~~l~~~~~~RRR~ 39 (44)
T 2jwa_A 19 VGILLVVVLGVVFGILIKRRQ 39 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhheehhh
Confidence 444444444444444444443
No 154
>4exl_A PBP 1, phosphate-binding protein PSTS 1; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; 1.70A {Streptococcus pneumoniae}
Probab=31.61 E-value=85 Score=29.56 Aligned_cols=72 Identities=13% Similarity=-0.011 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCcccEEEeceeeec-Ccceee-eccccccccceEEEE
Q 037841 83 CIDVFKAVIQELPYAVAYDFVPYGQPDGTSSGSYNDLIYQVFLGEFDAAVGDITILL-NRSNYV-DFTLPYTESGVSMIV 160 (561)
Q Consensus 83 ~idl~~~i~~~l~f~v~~~~v~~~~~~g~~ngs~~~li~~l~~g~~D~~vg~~~it~-~R~~~v-dfT~p~~~~~~~ivv 160 (561)
.-.+++.+.++.+ .+++.+.. ++-.+.+.++.+|++|+++.+..... +..+.- -...|+..+++++++
T Consensus 18 ~~~~~~~F~~~~P-~v~i~v~~---------~gS~~gi~~l~~g~~Dig~~~~~~~~~~~~~~~~l~~~~ia~d~lvvvv 87 (265)
T 4exl_A 18 VEVAADEFGTIHV-GKTVNVQG---------GGSGTGLSQVQSGAVDIGNSDVFAEEKDGIDASALVDHKVAVAGLALIV 87 (265)
T ss_dssp HHHHHHHHHHHST-TCEEEEEE---------ECHHHHHHHHHTTSSSEEEESSCGGGSTTCCGGGEECCEEEEEEEEEEE
T ss_pred HHHHHHHHHHHCC-CceEEEee---------CCcHHHHHHHHcCCCccccccCCcchhhcccccCceEeeEEEEEEEEEE
Confidence 3466778888874 24555544 24578899999999999886533221 001111 135788899999999
Q ss_pred EccC
Q 037841 161 PIKD 164 (561)
Q Consensus 161 p~~~ 164 (561)
+...
T Consensus 88 ~~~~ 91 (265)
T 4exl_A 88 NKEV 91 (265)
T ss_dssp CTTC
T ss_pred CCCC
Confidence 8554
No 155
>3hhg_A Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 3.20A {Neisseria meningitidis serogroup B}
Probab=29.91 E-value=28 Score=32.89 Aligned_cols=80 Identities=10% Similarity=0.041 Sum_probs=50.9
Q ss_pred CceEEEEecCCCCCcceEEEeeCCCCCCCceEEEehHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCc
Q 037841 48 EKKLRIGVPVKKGFSYFVNVTIDPKTQEPTSVTGFCIDVFKAVIQELPYAVAYDFVPYGQPDGTSSGSYNDLIYQVFLGE 127 (561)
Q Consensus 48 g~~LrVgv~~~~~~~pf~~~~~d~~~~~~~~~~G~~idl~~~i~~~l~f~v~~~~v~~~~~~g~~ngs~~~li~~l~~g~ 127 (561)
.+.|+||+. +.+ ...+-..++..+.++.+ .+.+++... +.+..+.+|+
T Consensus 92 ~g~l~I~~~--~~~-----------------~~~~l~~~l~~f~~~~P-~v~i~l~~~------------~~~~~l~~~~ 139 (306)
T 3hhg_A 92 QGVLSVDSA--MPM-----------------VLHLLAPLAAKFNERYP-HIRLSLVSS------------EGYINLIERK 139 (306)
T ss_dssp CEEEEEEBC--HHH-----------------HHHTHHHHHHHHHHHCT-TEEEEEECC------------SSSHHHHTTS
T ss_pred CCcEEEEcc--HHH-----------------HHHHHHHHHHHHHHHCC-CeEEEEEec------------cchhhHhhcC
Confidence 467999986 222 12356678999999998 467776521 1234578999
Q ss_pred ccEEEeceeeecCcceeeeccccccccceEEEEEcc
Q 037841 128 FDAAVGDITILLNRSNYVDFTLPYTESGVSMIVPIK 163 (561)
Q Consensus 128 ~D~~vg~~~it~~R~~~vdfT~p~~~~~~~ivvp~~ 163 (561)
+|+++....... ..+ -..++....++++++..
T Consensus 140 ~Dl~i~~~~~~~---~~l-~~~~L~~~~~~~v~~~~ 171 (306)
T 3hhg_A 140 VDIALRAGELDD---SGL-RARHLFDSRFRVIASPE 171 (306)
T ss_dssp SSCEEESCCCCC---SSC-EEEEEEEEEEEEEECHH
T ss_pred ccEEEEeCCCCC---CCe-EEEEeeeeEEEEEECHH
Confidence 999987432221 222 24566777888888744
No 156
>4gd5_A Phosphate ABC transporter, phosphate-binding PROT; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.70A {Clostridium perfringens}
Probab=29.26 E-value=81 Score=29.76 Aligned_cols=71 Identities=10% Similarity=0.054 Sum_probs=44.7
Q ss_pred HHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCcccEEEeceeeecCcceeeeccccccccceEEEEEccC
Q 037841 85 DVFKAVIQELPYAVAYDFVPYGQPDGTSSGSYNDLIYQVFLGEFDAAVGDITILLNRSNYVDFTLPYTESGVSMIVPIKD 164 (561)
Q Consensus 85 dl~~~i~~~l~f~v~~~~v~~~~~~g~~ngs~~~li~~l~~g~~D~~vg~~~it~~R~~~vdfT~p~~~~~~~ivvp~~~ 164 (561)
++.+++.+..+ .+++++... .-.+.+.++.+|.+|++..+-.+.++..+.-.-..|+..++++++++...
T Consensus 53 ~~a~~f~~~~p-~v~v~~~~~---------GSg~g~~~~~~G~~di~~as~~~~~~e~~~~~~~~~ia~d~~~vivn~~n 122 (279)
T 4gd5_A 53 AEAEAFKTKKP-DVSIEINQI---------GSSAGIKNAMEGVSEIGMASRDLKGEEKQAGLKEVEIAYDGIALITHKNN 122 (279)
T ss_dssp HHHHHHHHHST-TCEEEEEEC---------CHHHHHHHHHHTSSSEEEESSCCCHHHHTTCCEEEEEEEEEEEEEEETTC
T ss_pred HHHHHHHHHCC-CceEEEeeC---------CcHHHHHHHHcCCCcEEEecchhhhhHhhcCceEEEEEeeceeeeeccCC
Confidence 44445555553 245555442 23567889999999999877666544332222345778889999998665
Q ss_pred C
Q 037841 165 S 165 (561)
Q Consensus 165 ~ 165 (561)
.
T Consensus 123 ~ 123 (279)
T 4gd5_A 123 P 123 (279)
T ss_dssp S
T ss_pred c
Confidence 4
No 157
>1pc3_A Phosphate-binding protein 1; phosphate transport receptor, immonodominant antigen, mycoba tuberculosis, ION-dipole interactions; 2.16A {Mycobacterium tuberculosis} SCOP: c.94.1.1
Probab=27.28 E-value=54 Score=32.53 Aligned_cols=71 Identities=11% Similarity=-0.048 Sum_probs=47.9
Q ss_pred HHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCcccEEEeceeeecCcceee--eccccccccceEEEEE
Q 037841 84 IDVFKAVIQELPYAVAYDFVPYGQPDGTSSGSYNDLIYQVFLGEFDAAVGDITILLNRSNYV--DFTLPYTESGVSMIVP 161 (561)
Q Consensus 84 idl~~~i~~~l~f~v~~~~v~~~~~~g~~ngs~~~li~~l~~g~~D~~vg~~~it~~R~~~v--dfT~p~~~~~~~ivvp 161 (561)
-++++.+.+..+ .+++++.. +.-.+.+.++.+|++|+++.+..+.++..... -...|+..++++++++
T Consensus 42 ~~~~~~f~~~~p-~v~i~v~~---------~gS~~g~~~l~~g~~Di~~~~~~~~~~e~~~~~~l~~~pi~~d~lvvvvn 111 (350)
T 1pc3_A 42 NLWGPAFHERYP-NVTITAQG---------TGSGAGIAQAAAGTVNIGASDAYLSEGDMAAHKGLMNIALAISAQQVNYN 111 (350)
T ss_dssp HHHHHHHHHHST-TEEEECCB---------CCHHHHHHHHHTTSCSEEEESSCCCHHHHHHSTTEEEEEEEEEEEEEEEC
T ss_pred HHHHHHHHHHCC-CceEEEec---------CCCHHHHHHHHcCCCcEEeccCCCCHHHHHhcCCCEEeeEEeeeEEEEEe
Confidence 456677777665 24554433 24568899999999999988776665432110 1356788899999998
Q ss_pred ccC
Q 037841 162 IKD 164 (561)
Q Consensus 162 ~~~ 164 (561)
.+.
T Consensus 112 ~~~ 114 (350)
T 1pc3_A 112 LPG 114 (350)
T ss_dssp CTT
T ss_pred CCc
Confidence 654
No 158
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=27.12 E-value=79 Score=30.40 Aligned_cols=54 Identities=7% Similarity=0.212 Sum_probs=45.3
Q ss_pred cCccchhHHHHHHHhhhcc--ccccccchhHHHHHHHHHHHHHHHHHhHhhheeee
Q 037841 212 RHQVGTSFWFSFSTMVFSQ--RERVISNLARFVVIVWYFVVLVLTQSYTASLTSLL 265 (561)
Q Consensus 212 ~~~~~~~~~~~~~~l~~~~--~~~~~s~~~Ril~~~w~~~~lil~~~Yta~LtS~L 265 (561)
.-++.+++|+++.++.--| ...|.+..+|++.+++.++++.+...+.+.+...+
T Consensus 91 ~w~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l 146 (280)
T 3ukm_A 91 NWDFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRI 146 (280)
T ss_dssp CSSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478899999999999777 34678999999999999999999998888876544
No 159
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=26.00 E-value=61 Score=20.96 Aligned_cols=13 Identities=31% Similarity=0.450 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q 037841 435 LALIIFLAVFVGQ 447 (561)
Q Consensus 435 lallvfl~E~~~~ 447 (561)
+++++.++-++|+
T Consensus 24 v~li~~l~~~~~r 36 (38)
T 2k1k_A 24 AALLLGILVFRSR 36 (38)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHee
Confidence 4444444434443
No 160
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=25.12 E-value=1.6e+02 Score=28.68 Aligned_cols=85 Identities=12% Similarity=0.091 Sum_probs=57.1
Q ss_pred CCeeEEE--eCchHHHHHHhcC-CCccceeecCChHHHHHHhhccccCCceeEEeecc-------hh-HHHHHhcCCcce
Q 037841 284 GDNVGYQ--KGSFVLGILKQLG-FDERKLVVYNSPEECHELFQKGSANGGIAAAFEEI-------PY-GKLLVGQHCYKY 352 (561)
Q Consensus 284 ~~~vg~~--~gs~~~~~l~~~~-~~~~~~~~~~s~~~~~~~l~~g~~~~gv~a~i~~~-------~~-~~~~l~~~~~~l 352 (561)
..+|+|+ .|+|.+.-.++.. -+...++++.+.+++++++.+|+ ++..+... .. ....+.++. .+
T Consensus 6 ~~~VaylGp~GtfS~~Aa~~~~~~~~~~~~p~~s~~~vf~aV~~g~----~d~gVvPiENS~~G~V~~tlD~L~~~~-~l 80 (313)
T 3mwb_A 6 AVTYTFLGPQGTFTEAALMQVPGAADATRIPCTNVNTALERVRAGE----ADAAMVPIENSVEGGVTATLDAIATGQ-EL 80 (313)
T ss_dssp -CEEEEESSTTSHHHHHHTTSTTGGGSEEEEESSHHHHHHHHHTTS----CSEEEEEEESCTTCCHHHHHHHTTSSS-CC
T ss_pred ccEEEEECCCCcHHHHHHHHHhhcCCccEEecCCHHHHHHHHHcCC----CCeeEEEEeecCCCccHHHHHHhhCCC-Ce
Confidence 4578885 6888888776642 13457889999999999999999 65443321 11 112223333 38
Q ss_pred EEeCcccccCceEEEecCCCC
Q 037841 353 TMVEPTFKTAGFGFAFPLHSP 373 (561)
Q Consensus 353 ~~v~~~~~~~~~~~~~~k~sp 373 (561)
.++++.+..-...++..+|..
T Consensus 81 ~IvgE~~l~I~h~Ll~~~g~~ 101 (313)
T 3mwb_A 81 RIIREALVPITFVLVARPGVE 101 (313)
T ss_dssp EEEEEEEEECCCEEEECTTCC
T ss_pred EEEEEEEEeeeEEEEcCCCCC
Confidence 899998888888887777654
No 161
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=24.09 E-value=2.1e+02 Score=27.47 Aligned_cols=80 Identities=13% Similarity=0.049 Sum_probs=57.2
Q ss_pred CCeeEEE--eCchHHHHHHhcCCCccceeecCChHHHHHHhhccccCCceeEEeecc---------hhHHHHHhcCCcce
Q 037841 284 GDNVGYQ--KGSFVLGILKQLGFDERKLVVYNSPEECHELFQKGSANGGIAAAFEEI---------PYGKLLVGQHCYKY 352 (561)
Q Consensus 284 ~~~vg~~--~gs~~~~~l~~~~~~~~~~~~~~s~~~~~~~l~~g~~~~gv~a~i~~~---------~~~~~~l~~~~~~l 352 (561)
..+|+++ .|+|.+.-..+. + .++++.+.++.++++.+|+ ++..+... ..+..+. + ..+
T Consensus 6 ~~~iaylGp~Gtfs~~Aa~~~-f---~~~p~~s~~~vf~aV~~g~----~d~gVvPiENS~~G~V~~t~DlL~-~--~~l 74 (283)
T 2qmx_A 6 NWLIAYQGEPGAYSEIAALRF-G---EPLPCESFDDVFSAVTEQK----ADYAVIPIENSLGGSIHQNYDLLL-R--RPV 74 (283)
T ss_dssp CCEEEEESCTTSHHHHHHHHH-S---EEEEESCHHHHHHHHHTTS----CSEEEEEEEESSSCBCHHHHHHHH-H--SSE
T ss_pred CcEEEEECCCCCHHHHHHHHH-h---HhCcCCCHHHHHHHHHCCC----CCEEEEeehhcCCCccHHHHHHhh-c--CCc
Confidence 3478885 688888877664 3 6789999999999999999 55444331 1223333 3 248
Q ss_pred EEeCcccccCceEEEecCCCCC
Q 037841 353 TMVEPTFKTAGFGFAFPLHSPL 374 (561)
Q Consensus 353 ~~v~~~~~~~~~~~~~~k~spl 374 (561)
.++++.+..-...++..+|..+
T Consensus 75 ~I~gE~~l~I~h~Ll~~~g~~l 96 (283)
T 2qmx_A 75 VILAETFVKVEHCLLGLPGASV 96 (283)
T ss_dssp EEEEEEEEECCCEEEECSSCCT
T ss_pred EEEEEEEEeeeeeEecCCCCCh
Confidence 8999998888888888877543
No 162
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=22.22 E-value=2e+02 Score=27.36 Aligned_cols=82 Identities=15% Similarity=0.073 Sum_probs=57.4
Q ss_pred CeeEEE--eCchHHHHHHhcCCCcc--ceeecCChHHHHHHhhccccCCceeEEeecc---------hhHHHHHhcCCcc
Q 037841 285 DNVGYQ--KGSFVLGILKQLGFDER--KLVVYNSPEECHELFQKGSANGGIAAAFEEI---------PYGKLLVGQHCYK 351 (561)
Q Consensus 285 ~~vg~~--~gs~~~~~l~~~~~~~~--~~~~~~s~~~~~~~l~~g~~~~gv~a~i~~~---------~~~~~~l~~~~~~ 351 (561)
.+|+++ .|+|.+.-..+. ++.. .++++.+.++.++++.+|+ ++..+... ..+..+ .++ .
T Consensus 4 ~~iaylGp~Gtfs~~Aa~~~-f~~~~~~~~~~~s~~~v~~aV~~g~----~d~gVvPiENS~~G~V~~t~DlL-~~~--~ 75 (267)
T 2qmw_A 4 MQLYYLGPKGTFSYLACRQY-FSENEATFQPKSNLFEVIKAVADDD----TSIGVVPIENSIEGTINIVADAL-AQQ--D 75 (267)
T ss_dssp CEEEEECSTTSHHHHHHHHH-CCTTSSEEEEESSHHHHHHHHHHCS----SEEEEEEEESCSSSCSHHHHHHH-HTT--S
T ss_pred cEEEEECCCCcHHHHHHHHh-hccCCceEEEcCCHHHHHHHHHcCC----CCEEEEEehhcCCCChHHHHHHh-hcC--C
Confidence 367774 688888777664 3443 4889999999999999999 66554431 122232 333 3
Q ss_pred eEEeCcccccCceEEEecCCCCC
Q 037841 352 YTMVEPTFKTAGFGFAFPLHSPL 374 (561)
Q Consensus 352 l~~v~~~~~~~~~~~~~~k~spl 374 (561)
+.++++.+..-...++..+|..+
T Consensus 76 l~I~gE~~l~I~h~Ll~~~g~~l 98 (267)
T 2qmw_A 76 VFAHGEIRLDINFALYGNGTDSI 98 (267)
T ss_dssp SEEEEEEEEECCEEEECCSSCCS
T ss_pred cEEEEEEEEEeeeEEEecCCCCH
Confidence 88999998888888888877543
No 163
>1gtk_A Porphobilinogen deaminase; lyase, biosynthesis of linear tetrapyrrole, all alpha/beta; HET: DPM; 1.66A {Escherichia coli} SCOP: c.94.1.1 d.50.2.1 PDB: 1ah5_A* 2ypn_A* 1ypn_A* 1pda_A*
Probab=21.81 E-value=5.5e+02 Score=24.85 Aligned_cols=59 Identities=15% Similarity=0.059 Sum_probs=39.6
Q ss_pred CCHHHHHhCCCeeEEEeCchHHH--HHHhcCCCccceeecC-ChHHHHHHhhccccCCceeEEeecchhHH
Q 037841 275 TDVKMLIKRGDNVGYQKGSFVLG--ILKQLGFDERKLVVYN-SPEECHELFQKGSANGGIAAAFEEIPYGK 342 (561)
Q Consensus 275 ~sl~dL~~~~~~vg~~~gs~~~~--~l~~~~~~~~~~~~~~-s~~~~~~~l~~g~~~~gv~a~i~~~~~~~ 342 (561)
.+++||- .|-.||. |..+. .|+. .+|..+++.+. +.+..+..|..|. .||++.-..-+.
T Consensus 114 ~~l~~LP-~Ga~VGT---SSlRR~aQL~~-~rPdl~i~~lRGNV~TRL~KL~~g~----~DaiiLA~AGL~ 175 (313)
T 1gtk_A 114 DSLDALP-AGSIVGT---SSLRRQCQLAE-RRPDLIIRSLRGNVGTRLSKLDNGE----YDAIILAVAGLK 175 (313)
T ss_dssp SSGGGCC-TTCEEEC---CCHHHHHHHHH-HCTTSEEECCCSCHHHHHHHHHTTS----CSEEEEEHHHHH
T ss_pred CChhhCC-CCCEEec---CCHHHHHHHHH-HCCCCEEEeCCCCHHHHHHHhhCCC----CCEEEHhhhHHH
Confidence 4678885 4556664 44443 2333 36777777554 8899999999999 899887655443
No 164
>1ixh_A Phosphate-binding protein; phosphate transport, ultra high resolution, phosphate bindin protein; 0.98A {Escherichia coli} SCOP: c.94.1.1 PDB: 2abh_A 1a54_A* 1a55_A 1ixi_A 1quk_A 1ixg_A 1oib_A 1pbp_A 1qul_A 1qui_A 1quj_A 1a40_A 2z22_X
Probab=21.68 E-value=77 Score=30.78 Aligned_cols=70 Identities=14% Similarity=0.099 Sum_probs=45.9
Q ss_pred HHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCcccEEEeceeeecCcceee-eccccccccceEEEEEc
Q 037841 84 IDVFKAVIQELPYAVAYDFVPYGQPDGTSSGSYNDLIYQVFLGEFDAAVGDITILLNRSNYV-DFTLPYTESGVSMIVPI 162 (561)
Q Consensus 84 idl~~~i~~~l~f~v~~~~v~~~~~~g~~ngs~~~li~~l~~g~~D~~vg~~~it~~R~~~v-dfT~p~~~~~~~ivvp~ 162 (561)
-++++.+.+.-+ +++++.. ++-.+.+.++.+|++|+++.+..+.++..... -...|+..+.++++++.
T Consensus 17 ~~~~~~f~~~p~--v~i~v~~---------~gS~~~~~~l~~g~~Di~~~~~~~~~~e~~~~~l~~~~~~~d~lvvvv~~ 85 (321)
T 1ixh_A 17 AKWADTYQKETG--NKVNYQG---------IGSSGGVKQIIANTVDFGASDAPLSDEKLAQEGLFQFPTVIGGVVLAVNI 85 (321)
T ss_dssp HHHHHHHHHHHC--CEEEEEE---------CCHHHHHHHHHTTCSSEEEESSCCCHHHHHHHTEEEEEEEEEEEEEEECC
T ss_pred HHHHHHHHhcCC--ceEEEec---------CCCHHHHHHHHcCCCcEEecccCCChhhHhhCCCEEeeeeeeeEEEEEeC
Confidence 345566655333 3555444 24568899999999999988776655432100 13478889999999986
Q ss_pred cC
Q 037841 163 KD 164 (561)
Q Consensus 163 ~~ 164 (561)
+.
T Consensus 86 ~~ 87 (321)
T 1ixh_A 86 PG 87 (321)
T ss_dssp TT
T ss_pred CC
Confidence 54
Done!