BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037842
(78 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q00940|PEX10_PICAN Peroxisome biogenesis factor 10 OS=Pichia angusta GN=PEX10 PE=3
SV=1
Length = 295
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 21/47 (44%), Positives = 31/47 (65%)
Query: 13 EVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQGKCPTCRTRM 59
E TC +CL MK+ S +CGHVFC C++D ++ + +CP CR +M
Sbjct: 240 EASRTCMLCLSPMKDPSCGECGHVFCWKCVLDWVKERQECPLCRAKM 286
>sp|Q06554|IRC20_YEAST Uncharacterized ATP-dependent helicase IRC20 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=IRC20 PE=1
SV=1
Length = 1556
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 30/54 (55%)
Query: 16 FTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQGKCPTCRTRMSVRSIRRIFF 69
+C ICL ++ + KCGH FCKSCI+ +R KCP C+ S+ + F
Sbjct: 1237 LSCSICLGEVEIGAIIKCGHYFCKSCILTWLRAHSKCPICKGFCSISEVYNFKF 1290
>sp|Q7YR34|TRI26_PANTR Tripartite motif-containing protein 26 OS=Pan troglodytes
GN=TRIM26 PE=3 SV=1
Length = 539
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 13 EVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQGK---CPTCRTRMSVRSIRRIF 68
E TC ICLD +++ + CGHVFC+SC D + G CP C+ +IR ++
Sbjct: 11 EEEVTCSICLDYLRDPVTIDCGHVFCRSCTTDVRPISGSRPVCPLCKKPFKKENIRPVW 69
>sp|Q12899|TRI26_HUMAN Tripartite motif-containing protein 26 OS=Homo sapiens GN=TRIM26
PE=2 SV=1
Length = 539
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 13 EVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQGK---CPTCRTRMSVRSIRRIF 68
E TC ICLD +++ + CGHVFC+SC D + G CP C+ +IR ++
Sbjct: 11 EEEVTCSICLDYLRDPVTIDCGHVFCRSCTTDVRPISGSRPVCPLCKKPFKKENIRPVW 69
>sp|O77666|TRI26_PIG Tripartite motif-containing protein 26 OS=Sus scrofa GN=TRIM26
PE=3 SV=2
Length = 545
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 13 EVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQGK---CPTCRTRMSVRSIRRIF 68
E TC ICLD +++ + CGHVFC+SC D + G CP C+ + +IR ++
Sbjct: 11 EEEVTCSICLDYLRDPVTIDCGHVFCRSCTTDIHPVSGGRPVCPLCKKPFTKENIRPVW 69
>sp|Q99496|RING2_HUMAN E3 ubiquitin-protein ligase RING2 OS=Homo sapiens GN=RNF2 PE=1 SV=1
Length = 336
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/51 (50%), Positives = 33/51 (64%), Gaps = 3/51 (5%)
Query: 18 CGICLDTMKEESSTK-CGHVFCKSCIVDAIRLQGK-CPTCRTRM-SVRSIR 65
C ICLD +K +TK C H FC CI+ A+R K CPTCR ++ S RS+R
Sbjct: 51 CPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLR 101
>sp|Q9CQJ4|RING2_MOUSE E3 ubiquitin-protein ligase RING2 OS=Mus musculus GN=Rnf2 PE=1 SV=1
Length = 336
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/51 (50%), Positives = 33/51 (64%), Gaps = 3/51 (5%)
Query: 18 CGICLDTMKEESSTK-CGHVFCKSCIVDAIRLQGK-CPTCRTRM-SVRSIR 65
C ICLD +K +TK C H FC CI+ A+R K CPTCR ++ S RS+R
Sbjct: 51 CPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLR 101
>sp|Q5R9J5|RING2_PONAB E3 ubiquitin-protein ligase RING2 OS=Pongo abelii GN=RNF2 PE=2 SV=1
Length = 336
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/51 (50%), Positives = 33/51 (64%), Gaps = 3/51 (5%)
Query: 18 CGICLDTMKEESSTK-CGHVFCKSCIVDAIRLQGK-CPTCRTRM-SVRSIR 65
C ICLD +K +TK C H FC CI+ A+R K CPTCR ++ S RS+R
Sbjct: 51 CPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLR 101
>sp|Q803I4|RING2_DANRE E3 ubiquitin-protein ligase RING2 OS=Danio rerio GN=rnf2 PE=2 SV=1
Length = 336
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/51 (50%), Positives = 33/51 (64%), Gaps = 3/51 (5%)
Query: 18 CGICLDTMKEESSTK-CGHVFCKSCIVDAIRLQGK-CPTCRTRM-SVRSIR 65
C ICLD +K +TK C H FC CI+ A+R K CPTCR ++ S RS+R
Sbjct: 51 CPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLR 101
>sp|Q99PN3|TRI26_MOUSE Tripartite motif-containing protein 26 OS=Mus musculus GN=Trim26
PE=2 SV=3
Length = 545
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 13 EVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQGK---CPTCRTRMSVRSIRRIF 68
E TC ICLD +++ + CGHVFC+SC D + G CP C+ +IR ++
Sbjct: 11 EEEVTCSICLDYLRDPVTIDCGHVFCRSCTSDIRPISGNRPVCPLCKKPFKKENIRPVW 69
>sp|Q7YRV4|RO52_BOVIN E3 ubiquitin-protein ligase TRIM21 OS=Bos taurus GN=TRIM21 PE=2
SV=1
Length = 469
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 17 TCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQGK-CPTCRTRMSVRSIR 65
TC ICLD M E S +CGH FC+ CI + + G CP CR ++++R
Sbjct: 15 TCSICLDPMVEPMSIECGHSFCQECISEVGKEGGSVCPVCRRHFLLQNLR 64
>sp|Q6LFN2|ZNRF1_PLAF7 RING finger protein PFF0165c OS=Plasmodium falciparum (isolate 3D7)
GN=PFF0165c PE=2 SV=1
Length = 1103
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 15 RFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQG-KCPTCRTRMSVRSIRRIFF 69
R C +C++ + KCGH++C +CI + ++ + KCP C+ + +++IF
Sbjct: 1047 RLICSVCMENFRNYIIIKCGHIYCNNCIFNNLKTRNRKCPQCKVPFDKKDLQKIFL 1102
>sp|P62603|TRI26_RAT Tripartite motif-containing protein 26 OS=Rattus norvegicus
GN=Trim26 PE=2 SV=1
Length = 542
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 13 EVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQGK---CPTCRTRMSVRSIRRIF 68
E TC ICLD +++ + CGHVFC+SC D + G CP C+ +IR ++
Sbjct: 11 EEEVTCSICLDYLRDPVTIDCGHVFCRSCTSDIRPISGNRPVCPLCKKPFKKENIRPVW 69
>sp|Q9VB08|RING1_DROME E3 ubiquitin-protein ligase RING1 OS=Drosophila melanogaster
GN=Sce PE=1 SV=1
Length = 435
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 27/51 (52%), Positives = 34/51 (66%), Gaps = 3/51 (5%)
Query: 18 CGICLDTMKEESSTK-CGHVFCKSCIVDAIRLQGK-CPTCRTRM-SVRSIR 65
C ICLD +K+ +TK C H FC CIV A+R K CPTCR ++ S RS+R
Sbjct: 46 CPICLDMLKKTMTTKECLHRFCSDCIVTALRSGNKECPTCRKKLVSKRSLR 96
>sp|Q66J69|RNG2A_XENLA E3 ubiquitin-protein ligase RING2-A OS=Xenopus laevis GN=rnf2-a
PE=2 SV=1
Length = 344
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 27/51 (52%), Positives = 33/51 (64%), Gaps = 3/51 (5%)
Query: 18 CGICLDTMKEESSTK-CGHVFCKSCIVDAIRLQGK-CPTCRTRM-SVRSIR 65
C ICLD +K +TK C H FC CIV A+R K CPTCR ++ S RS+R
Sbjct: 48 CPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNKECPTCRKKLVSKRSLR 98
>sp|Q7ZWM8|RNG2B_XENLA E3 ubiquitin-protein ligase RING2-B OS=Xenopus laevis GN=rnf2-b
PE=2 SV=2
Length = 343
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 27/51 (52%), Positives = 33/51 (64%), Gaps = 3/51 (5%)
Query: 18 CGICLDTMKEESSTK-CGHVFCKSCIVDAIRLQGK-CPTCRTRM-SVRSIR 65
C ICLD +K +TK C H FC CIV A+R K CPTCR ++ S RS+R
Sbjct: 47 CPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNKECPTCRKKLVSKRSLR 97
>sp|Q4KLY4|RING2_RAT E3 ubiquitin-protein ligase RING2 OS=Rattus norvegicus GN=Rnf2 PE=2
SV=1
Length = 308
Score = 49.3 bits (116), Expect = 6e-06, Method: Composition-based stats.
Identities = 26/51 (50%), Positives = 33/51 (64%), Gaps = 3/51 (5%)
Query: 18 CGICLDTMKEESSTK-CGHVFCKSCIVDAIRLQGK-CPTCRTRM-SVRSIR 65
C ICLD +K +TK C H FC CI+ A+R K CPTCR ++ S RS+R
Sbjct: 51 CPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLR 101
>sp|Q61510|TRI25_MOUSE E3 ubiquitin/ISG15 ligase TRIM25 OS=Mus musculus GN=Trim25 PE=2
SV=2
Length = 634
Score = 49.3 bits (116), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 10/61 (16%)
Query: 16 FTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQG---KCPTCRTRMSVRSIRRIFFPQL 72
+C +CL+ KE +T CGH FC SC+ + +QG +CP CR VR PQL
Sbjct: 11 LSCSVCLELFKEPVTTPCGHNFCMSCLDETWVVQGPPYRCPQCRKVYQVR-------PQL 63
Query: 73 Q 73
Q
Sbjct: 64 Q 64
>sp|P19474|RO52_HUMAN E3 ubiquitin-protein ligase TRIM21 OS=Homo sapiens GN=TRIM21 PE=1
SV=1
Length = 475
Score = 48.9 bits (115), Expect = 8e-06, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 17 TCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQGK-CPTCRTRMSVRSIR 65
TC ICLD E S +CGH FC+ CI + G CP CR R ++++R
Sbjct: 15 TCPICLDPFVEPVSIECGHSFCQECISQVGKGGGSVCPVCRQRFLLKNLR 64
>sp|Q62191|RO52_MOUSE E3 ubiquitin-protein ligase TRIM21 OS=Mus musculus GN=Trim21 PE=1
SV=1
Length = 470
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 17 TCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQG-KCPTCRTRMSVRSIR 65
TC ICLD M E S +CGH FCK CI + + G CP CR + +R++R
Sbjct: 19 TCSICLDPMVEPMSIECGHCFCKECIFEVGKNGGSSCPECRQQFLLRNLR 68
>sp|Q6J6J0|BRCA1_PONPY Breast cancer type 1 susceptibility protein homolog OS=Pongo
pygmaeus GN=BRCA1 PE=3 SV=1
Length = 1863
Score = 48.9 bits (115), Expect = 9e-06, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 33/51 (64%), Gaps = 3/51 (5%)
Query: 18 CGICLDTMKEESSTKCGHVFCKSCIVDAIRLQ---GKCPTCRTRMSVRSIR 65
C ICL+ +KE STKC H+FCK C++ + + +CP C+ ++ RS++
Sbjct: 24 CPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQ 74
>sp|Q8NHY2|RFWD2_HUMAN E3 ubiquitin-protein ligase RFWD2 OS=Homo sapiens GN=RFWD2 PE=1
SV=1
Length = 731
Score = 48.9 bits (115), Expect = 9e-06, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 23/40 (57%)
Query: 16 FTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQGKCPTC 55
F C IC D ++E TKCGH FC CI ++ +CP C
Sbjct: 134 FVCPICFDMIEEAYMTKCGHSFCYKCIHQSLEDNNRCPKC 173
>sp|P38398|BRCA1_HUMAN Breast cancer type 1 susceptibility protein OS=Homo sapiens
GN=BRCA1 PE=1 SV=2
Length = 1863
Score = 48.9 bits (115), Expect = 9e-06, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 33/51 (64%), Gaps = 3/51 (5%)
Query: 18 CGICLDTMKEESSTKCGHVFCKSCIVDAIRLQ---GKCPTCRTRMSVRSIR 65
C ICL+ +KE STKC H+FCK C++ + + +CP C+ ++ RS++
Sbjct: 24 CPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQ 74
>sp|Q864U1|BRCA1_BOVIN Breast cancer type 1 susceptibility protein homolog OS=Bos taurus
GN=BRCA1 PE=1 SV=1
Length = 1849
Score = 48.9 bits (115), Expect = 9e-06, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 33/51 (64%), Gaps = 3/51 (5%)
Query: 18 CGICLDTMKEESSTKCGHVFCKSCIVDAIRLQ---GKCPTCRTRMSVRSIR 65
C ICL+ +KE STKC H+FCK C++ + + +CP C+ ++ RS++
Sbjct: 24 CPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQ 74
>sp|Q9GKK8|BRCA1_PANTR Breast cancer type 1 susceptibility protein homolog OS=Pan
troglodytes GN=BRCA1 PE=2 SV=2
Length = 1863
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 33/51 (64%), Gaps = 3/51 (5%)
Query: 18 CGICLDTMKEESSTKCGHVFCKSCIVDAIRLQ---GKCPTCRTRMSVRSIR 65
C ICL+ +KE STKC H+FCK C++ + + +CP C+ ++ RS++
Sbjct: 24 CPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQ 74
>sp|Q9R1A8|RFWD2_MOUSE E3 ubiquitin-protein ligase RFWD2 OS=Mus musculus GN=Rfwd2 PE=1
SV=2
Length = 733
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 23/40 (57%)
Query: 16 FTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQGKCPTC 55
F C IC D ++E TKCGH FC CI ++ +CP C
Sbjct: 136 FVCPICFDMIEEAYMTKCGHSFCYKCIHQSLEDNNRCPKC 175
>sp|Q6J6I8|BRCA1_GORGO Breast cancer type 1 susceptibility protein homolog OS=Gorilla
gorilla gorilla GN=BRCA1 PE=3 SV=1
Length = 1863
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 33/51 (64%), Gaps = 3/51 (5%)
Query: 18 CGICLDTMKEESSTKCGHVFCKSCIVDAIRLQ---GKCPTCRTRMSVRSIR 65
C ICL+ +KE STKC H+FCK C++ + + +CP C+ ++ RS++
Sbjct: 24 CPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQ 74
>sp|Q6MGB6|RING1_RAT E3 ubiquitin-protein ligase RING1 OS=Rattus norvegicus GN=Ring1
PE=2 SV=2
Length = 406
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/51 (52%), Positives = 33/51 (64%), Gaps = 3/51 (5%)
Query: 18 CGICLDTMKEESSTK-CGHVFCKSCIVDAIRLQGK-CPTCRTRM-SVRSIR 65
C ICLD +K +TK C H FC CIV A+R K CPTCR ++ S RS+R
Sbjct: 48 CPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNKECPTCRKKLVSKRSLR 98
>sp|O35730|RING1_MOUSE E3 ubiquitin-protein ligase RING1 OS=Mus musculus GN=Ring1 PE=1
SV=2
Length = 406
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/51 (52%), Positives = 33/51 (64%), Gaps = 3/51 (5%)
Query: 18 CGICLDTMKEESSTK-CGHVFCKSCIVDAIRLQGK-CPTCRTRM-SVRSIR 65
C ICLD +K +TK C H FC CIV A+R K CPTCR ++ S RS+R
Sbjct: 48 CPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNKECPTCRKKLVSKRSLR 98
>sp|Q9D9R0|RN125_MOUSE E3 ubiquitin-protein ligase RNF125 OS=Mus musculus GN=Rnf125 PE=2
SV=3
Length = 233
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 5 RNGAVVVGEVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQGK--CPTCRTRM 59
R+G + F C +CL+ + + T+CGHVFC+SCI +I+ K CP CR +
Sbjct: 24 RSGDSELPITSFDCSVCLEVLHQPVRTRCGHVFCRSCIATSIKNNNKWTCPYCRAYL 80
>sp|Q5TJF3|RING1_CANFA E3 ubiquitin-protein ligase RING1 OS=Canis familiaris GN=RING1
PE=3 SV=2
Length = 406
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/51 (52%), Positives = 33/51 (64%), Gaps = 3/51 (5%)
Query: 18 CGICLDTMKEESSTK-CGHVFCKSCIVDAIRLQGK-CPTCRTRM-SVRSIR 65
C ICLD +K +TK C H FC CIV A+R K CPTCR ++ S RS+R
Sbjct: 48 CPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNKECPTCRKKLVSKRSLR 98
>sp|Q06587|RING1_HUMAN E3 ubiquitin-protein ligase RING1 OS=Homo sapiens GN=RING1 PE=1
SV=2
Length = 406
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/51 (52%), Positives = 33/51 (64%), Gaps = 3/51 (5%)
Query: 18 CGICLDTMKEESSTK-CGHVFCKSCIVDAIRLQGK-CPTCRTRM-SVRSIR 65
C ICLD +K +TK C H FC CIV A+R K CPTCR ++ S RS+R
Sbjct: 48 CPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNKECPTCRKKLVSKRSLR 98
>sp|Q14527|HLTF_HUMAN Helicase-like transcription factor OS=Homo sapiens GN=HLTF PE=1
SV=2
Length = 1009
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 20/42 (47%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 18 CGICLDTMKEESSTKCGHVFCKSCIVDAIRLQ---GKCPTCR 56
C ICLD++ T C HVFCK CI I+ + KCP CR
Sbjct: 760 CAICLDSLTVPVITHCAHVFCKPCICQVIQNEQPHAKCPLCR 801
>sp|P68907|PZRN3_RAT E3 ubiquitin-protein ligase PDZRN3 OS=Rattus norvegicus GN=Pdzrn3
PE=1 SV=1
Length = 1062
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 18 CGICLDTMKEESSTKCGHVFCKSCIVDAIRLQGKCPT-CRTRMSVRSIRRIF 68
C +C +++ +T CGHVFC C++ + +G CP+ CR R+S + + +
Sbjct: 18 CALCHKVLEDPLTTPCGHVFCAGCVLPWVVQEGSCPSRCRGRLSAKELNHVL 69
>sp|Q6J6I9|BRCA1_MACMU Breast cancer type 1 susceptibility protein homolog OS=Macaca
mulatta GN=BRCA1 PE=3 SV=1
Length = 1863
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 33/51 (64%), Gaps = 3/51 (5%)
Query: 18 CGICLDTMKEESSTKCGHVFCKSCIVDAIRLQ---GKCPTCRTRMSVRSIR 65
C ICL+ +KE STKC H+FC+ C++ + + +CP C+ ++ RS++
Sbjct: 24 CPICLELIKEPVSTKCDHIFCRFCMLKLLNQKKGPSQCPLCKNDITKRSLQ 74
>sp|Q95216|HLTF_RABIT Helicase-like transcription factor OS=Oryctolagus cuniculus GN=HLTF
PE=1 SV=1
Length = 1005
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/42 (47%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 18 CGICLDTMKEESSTKCGHVFCKSCIVDAIRLQ---GKCPTCR 56
C ICLD++ T C HVFCK CI I+ + KCP CR
Sbjct: 757 CAICLDSLTVPVITHCAHVFCKPCICQCIQNEQPHAKCPLCR 798
>sp|Q8GUK7|RMA3_ARATH E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana GN=RMA3
PE=1 SV=1
Length = 243
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 10/73 (13%)
Query: 16 FTCGICLDTMKEESSTKCGHVFCKSCI----------VDAIRLQGKCPTCRTRMSVRSIR 65
F C ICLDT + T CGH+FC CI V + Q CP C++ +++ S+
Sbjct: 42 FDCNICLDTAHDPVVTLCGHLFCWPCIYKWLHVQLSSVSVDQHQNNCPVCKSNITITSLV 101
Query: 66 RIFFPQLQPPASS 78
++ + P+S+
Sbjct: 102 PLYGRGMSSPSST 114
>sp|Q69ZS0|PZRN3_MOUSE E3 ubiquitin-protein ligase PDZRN3 OS=Mus musculus GN=Pdzrn3 PE=1
SV=3
Length = 1063
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 18 CGICLDTMKEESSTKCGHVFCKSCIVDAIRLQGKCPT-CRTRMSVRSIRRIF 68
C +C +++ +T CGHVFC C++ + +G CP CR R+S + + +
Sbjct: 18 CALCHKVLEDPLTTPCGHVFCAGCVLPWVVQEGSCPARCRGRLSAKELNHVL 69
>sp|Q9UPQ7|PZRN3_HUMAN E3 ubiquitin-protein ligase PDZRN3 OS=Homo sapiens GN=PDZRN3 PE=1
SV=2
Length = 1066
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 18 CGICLDTMKEESSTKCGHVFCKSCIVDAIRLQGKCPT-CRTRMSVRSIRRIF 68
C +C +++ +T CGHVFC C++ + +G CP CR R+S + + +
Sbjct: 18 CALCHKVLEDPLTTPCGHVFCAGCVLPWVVQEGSCPARCRGRLSAKELNHVL 69
>sp|Q6PCN7|HLTF_MOUSE Helicase-like transcription factor OS=Mus musculus GN=Hltf PE=1
SV=1
Length = 1003
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 18 CGICLDTMKEESSTKCGHVFCKSCIVDAIRLQ---GKCPTCRTRM 59
C ICLD++ T C HVFCK CI I + KCP CR +
Sbjct: 754 CAICLDSLTFPVITHCAHVFCKPCICQVIHSEQPHAKCPLCRNEI 798
>sp|Q02398|RAD18_EMENI Postreplication repair E3 ubiquitin-protein ligase rad18
OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=uvsH PE=2 SV=1
Length = 443
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 25/54 (46%)
Query: 13 EVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQGKCPTCRTRMSVRSIRR 66
E C +C D T C H FC CI + +GKCPTCR+ +RR
Sbjct: 25 ETSLRCQVCKDFFDNPVITSCSHTFCSLCIRRCLSTEGKCPTCRSSDQELKLRR 78
>sp|A2XW69|BRE1A_ORYSI E3 ubiquitin-protein ligase BRE1-like 1 OS=Oryza sativa subsp.
indica GN=BRE1A PE=3 SV=2
Length = 884
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 18 CGICLDTMKEESSTKCGHVFCKSCIVDAI-RLQGKCPTCRTRMSVRSIRRIF 68
CGIC D KE TKC H+FC CI ++ Q +CP+C ++ I+
Sbjct: 832 CGICHDRQKEVVITKCYHLFCNQCIQKSLGNRQRRCPSCSLSFGANDVKPIY 883
>sp|Q7XU27|BRE1A_ORYSJ E3 ubiquitin-protein ligase BRE1-like 1 OS=Oryza sativa subsp.
japonica GN=BRE1A PE=2 SV=3
Length = 884
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 18 CGICLDTMKEESSTKCGHVFCKSCIVDAI-RLQGKCPTCRTRMSVRSIRRIF 68
CGIC D KE TKC H+FC CI ++ Q +CP+C ++ I+
Sbjct: 832 CGICHDRQKEVVITKCYHLFCNQCIQKSLGNRQRRCPSCSLSFGANDVKPIY 883
>sp|Q1XHU0|TRI39_PANTR E3 ubiquitin-protein ligase TRIM39 OS=Pan troglodytes GN=TRIM39
PE=3 SV=1
Length = 518
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 13 EVRFTCGICLDTMKEESSTKCGHVFCKSCIV---DAIRLQGKCPTCRTRMSVRSIR 65
+V +C +CL+ +KE +CGH FCK+CI + + CP CR RS+R
Sbjct: 24 QVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVCRKTSRYRSLR 79
>sp|Q9HCM9|TRI39_HUMAN E3 ubiquitin-protein ligase TRIM39 OS=Homo sapiens GN=TRIM39 PE=1
SV=2
Length = 518
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 13 EVRFTCGICLDTMKEESSTKCGHVFCKSCIV---DAIRLQGKCPTCRTRMSVRSIR 65
+V +C +CL+ +KE +CGH FCK+CI + + CP CR RS+R
Sbjct: 24 QVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVCRKTSRYRSLR 79
>sp|Q9P3U8|YJ95_SCHPO Uncharacterized RING finger protein C548.05c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC548.05c PE=4 SV=1
Length = 468
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 26/42 (61%)
Query: 18 CGICLDTMKEESSTKCGHVFCKSCIVDAIRLQGKCPTCRTRM 59
C IC + ++ +T CGH +C C+++ ++ CPTCR ++
Sbjct: 85 CPICTEALQRPFTTHCGHTYCYECLLNWLKESKSCPTCRQKL 126
>sp|Q6MFZ5|TRI39_RAT E3 ubiquitin-protein ligase TRIM39 OS=Rattus norvegicus GN=Trim39
PE=2 SV=1
Length = 488
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 13 EVRFTCGICLDTMKEESSTKCGHVFCKSCIV---DAIRLQGKCPTCRTRMSVRSIR 65
+V +C +CL+ +KE +CGH FCK+CI + + CP CR RS+R
Sbjct: 24 QVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVCRKTSRYRSLR 79
>sp|Q9ESN2|TRI39_MOUSE E3 ubiquitin-protein ligase TRIM39 OS=Mus musculus GN=Trim39 PE=2
SV=1
Length = 488
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 13 EVRFTCGICLDTMKEESSTKCGHVFCKSCIV---DAIRLQGKCPTCRTRMSVRSIR 65
+V +C +CL+ +KE +CGH FCK+CI + + CP CR RS+R
Sbjct: 24 QVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVCRKTSRYRSLR 79
>sp|Q336R3|BRE1B_ORYSJ E3 ubiquitin-protein ligase BRE1-like 2 OS=Oryza sativa subsp.
japonica GN=BRE1B PE=2 SV=1
Length = 844
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 18 CGICLDTMKEESSTKCGHVFCKSCIVDAIRLQG-KCPTCRTRMSVRSIRRI 67
CG+C D KE TKC H+FC CI + ++ KCP C T +R +
Sbjct: 792 CGVCFDRPKEVVITKCFHLFCSPCIQRNLEIRHRKCPGCGTPFGQSDVREV 842
>sp|A2ZAC2|BRE1B_ORYSI E3 ubiquitin-protein ligase BRE1-like 2 OS=Oryza sativa subsp.
indica GN=BRE1B PE=3 SV=2
Length = 844
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 18 CGICLDTMKEESSTKCGHVFCKSCIVDAIRLQG-KCPTCRTRMSVRSIRRI 67
CG+C D KE TKC H+FC CI + ++ KCP C T +R +
Sbjct: 792 CGVCFDRPKEVVITKCFHLFCSPCIQRNLEIRHRKCPGCGTPFGQSDVREV 842
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.328 0.137 0.444
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,130,306
Number of Sequences: 539616
Number of extensions: 752940
Number of successful extensions: 3335
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 370
Number of HSP's that attempted gapping in prelim test: 2635
Number of HSP's gapped (non-prelim): 981
length of query: 78
length of database: 191,569,459
effective HSP length: 49
effective length of query: 29
effective length of database: 165,128,275
effective search space: 4788719975
effective search space used: 4788719975
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.8 bits)