Query 037842
Match_columns 78
No_of_seqs 198 out of 1821
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 07:45:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037842.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037842hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ng2_A RNF4, snurf, ring finge 99.8 1.9E-19 6.6E-24 91.3 2.8 59 11-69 6-71 (71)
2 2djb_A Polycomb group ring fin 99.8 9.4E-19 3.2E-23 89.3 5.3 62 7-68 7-69 (72)
3 2xeu_A Ring finger protein 4; 99.7 8.1E-19 2.8E-23 87.3 3.1 56 14-69 2-64 (64)
4 2ecy_A TNF receptor-associated 99.7 3.4E-18 1.2E-22 85.8 4.8 56 9-64 9-65 (66)
5 2d8t_A Dactylidin, ring finger 99.7 1.3E-18 4.3E-23 88.6 3.2 58 9-66 9-66 (71)
6 1t1h_A Gspef-atpub14, armadill 99.7 3.4E-18 1.2E-22 88.2 4.5 57 11-67 4-61 (78)
7 2ysl_A Tripartite motif-contai 99.7 8E-18 2.7E-22 85.7 4.9 55 10-64 15-72 (73)
8 2ecw_A Tripartite motif-contai 99.7 1.8E-17 6.2E-22 86.3 5.4 59 10-68 14-78 (85)
9 2yur_A Retinoblastoma-binding 99.7 7.1E-18 2.4E-22 86.4 3.6 55 7-61 7-64 (74)
10 2egp_A Tripartite motif-contai 99.7 3E-18 1E-22 88.5 2.0 60 9-68 6-72 (79)
11 3lrq_A E3 ubiquitin-protein li 99.7 7.1E-18 2.4E-22 90.9 3.3 57 12-68 19-77 (100)
12 1g25_A CDK-activating kinase a 99.7 1.3E-17 4.5E-22 83.4 4.1 57 14-70 2-64 (65)
13 2ea6_A Ring finger protein 4; 99.7 9.6E-18 3.3E-22 84.4 3.5 55 7-61 7-68 (69)
14 2csy_A Zinc finger protein 183 99.7 2.5E-17 8.5E-22 85.6 5.1 51 10-60 10-60 (81)
15 2kr4_A Ubiquitin conjugation f 99.7 2.4E-17 8.2E-22 86.6 4.9 59 9-67 8-66 (85)
16 3ztg_A E3 ubiquitin-protein li 99.7 2.9E-17 1E-21 87.0 4.7 58 8-65 6-67 (92)
17 2ecn_A Ring finger protein 141 99.7 1.6E-17 5.3E-22 84.1 3.1 58 8-66 8-65 (70)
18 2ecv_A Tripartite motif-contai 99.7 2.6E-17 9E-22 85.7 4.0 59 10-68 14-78 (85)
19 2ct2_A Tripartite motif protei 99.7 2.9E-17 9.8E-22 86.2 4.1 57 8-64 8-71 (88)
20 2ect_A Ring finger protein 126 99.7 5.7E-17 1.9E-21 83.6 4.6 60 8-67 8-70 (78)
21 4ayc_A E3 ubiquitin-protein li 99.7 1.7E-17 5.8E-22 93.8 2.7 50 13-62 51-100 (138)
22 1wgm_A Ubiquitin conjugation f 99.7 1.1E-16 3.7E-21 86.2 5.2 57 11-67 18-75 (98)
23 2kre_A Ubiquitin conjugation f 99.7 8.2E-17 2.8E-21 86.9 4.7 57 11-67 25-81 (100)
24 2y43_A E3 ubiquitin-protein li 99.7 5E-17 1.7E-21 87.2 3.5 55 13-67 20-75 (99)
25 2ysj_A Tripartite motif-contai 99.7 1.5E-16 5.1E-21 79.1 4.9 46 10-55 15-63 (63)
26 4ap4_A E3 ubiquitin ligase RNF 99.7 7.4E-17 2.5E-21 89.9 4.0 59 13-71 5-70 (133)
27 2kiz_A E3 ubiquitin-protein li 99.6 2E-16 6.8E-21 79.8 4.7 56 6-61 5-63 (69)
28 2ckl_A Polycomb group ring fin 99.6 7E-17 2.4E-21 87.9 2.4 53 10-62 10-63 (108)
29 3fl2_A E3 ubiquitin-protein li 99.6 1E-16 3.6E-21 89.1 3.1 49 13-61 50-99 (124)
30 3hct_A TNF receptor-associated 99.6 1.7E-16 5.6E-21 87.7 3.7 58 9-66 12-70 (118)
31 2ecj_A Tripartite motif-contai 99.6 5.2E-16 1.8E-20 75.7 4.5 48 8-55 8-58 (58)
32 1jm7_A BRCA1, breast cancer ty 99.6 2.9E-16 9.8E-21 85.6 3.1 55 13-67 19-76 (112)
33 4ap4_A E3 ubiquitin ligase RNF 99.6 2.9E-16 9.8E-21 87.5 3.1 60 10-69 67-133 (133)
34 1iym_A EL5; ring-H2 finger, ub 99.6 3.1E-16 1.1E-20 75.9 2.7 48 13-60 3-54 (55)
35 2ep4_A Ring finger protein 24; 99.6 5.2E-16 1.8E-20 79.2 3.7 54 8-61 8-64 (74)
36 1x4j_A Ring finger protein 38; 99.6 2.9E-16 9.8E-21 80.5 2.4 50 12-61 20-72 (75)
37 2l0b_A E3 ubiquitin-protein li 99.6 7.6E-16 2.6E-20 81.7 3.9 50 12-61 37-89 (91)
38 3l11_A E3 ubiquitin-protein li 99.6 1.5E-16 5.2E-21 87.3 1.2 53 9-61 9-62 (115)
39 2ecm_A Ring finger and CHY zin 99.6 3.8E-16 1.3E-20 75.5 2.4 48 13-60 3-54 (55)
40 1rmd_A RAG1; V(D)J recombinati 99.6 4.6E-16 1.6E-20 85.5 2.9 54 13-66 21-75 (116)
41 1z6u_A NP95-like ring finger p 99.6 6.2E-16 2.1E-20 88.6 3.2 50 13-62 76-126 (150)
42 1chc_A Equine herpes virus-1 r 99.6 5.3E-16 1.8E-20 78.0 2.1 48 13-60 3-51 (68)
43 2ecl_A Ring-box protein 2; RNF 99.6 4.4E-15 1.5E-19 77.2 5.0 51 14-64 14-79 (81)
44 3knv_A TNF receptor-associated 99.6 1.4E-15 4.8E-20 86.4 2.8 51 10-60 26-77 (141)
45 1e4u_A Transcriptional repress 99.6 8.7E-15 3E-19 75.8 5.4 57 10-66 6-67 (78)
46 3hcs_A TNF receptor-associated 99.5 3E-15 1E-19 87.0 3.7 57 10-66 13-70 (170)
47 2vje_A E3 ubiquitin-protein li 99.5 3.4E-15 1.2E-19 74.6 3.3 56 12-69 5-63 (64)
48 2ckl_B Ubiquitin ligase protei 99.5 2.7E-15 9.2E-20 86.8 3.3 50 12-61 51-102 (165)
49 1jm7_B BARD1, BRCA1-associated 99.5 6.6E-16 2.3E-20 85.1 0.4 53 12-66 19-72 (117)
50 2yu4_A E3 SUMO-protein ligase 99.5 3.2E-15 1.1E-19 79.7 2.9 56 12-67 4-69 (94)
51 1v87_A Deltex protein 2; ring- 99.5 5.9E-15 2E-19 80.7 4.0 49 14-62 24-95 (114)
52 2c2l_A CHIP, carboxy terminus 99.5 5.6E-15 1.9E-19 90.6 3.8 57 11-67 204-261 (281)
53 1bor_A Transcription factor PM 99.5 1.7E-15 5.7E-20 73.9 0.5 47 12-61 3-49 (56)
54 2vje_B MDM4 protein; proto-onc 99.5 1.5E-14 5.2E-19 72.0 3.0 55 12-68 4-61 (63)
55 2f42_A STIP1 homology and U-bo 99.5 2.6E-14 8.8E-19 84.0 4.3 59 10-68 101-160 (179)
56 4ic3_A E3 ubiquitin-protein li 99.5 1.3E-14 4.5E-19 74.3 1.7 45 13-61 22-67 (74)
57 3dpl_R Ring-box protein 1; ubi 99.4 7.4E-14 2.5E-18 76.0 4.0 48 14-61 36-101 (106)
58 3htk_C E3 SUMO-protein ligase 99.4 1.7E-13 5.7E-18 84.4 4.7 60 8-67 174-238 (267)
59 2y1n_A E3 ubiquitin-protein li 99.4 1.2E-13 4E-18 89.0 3.7 51 15-65 332-383 (389)
60 2ecg_A Baculoviral IAP repeat- 99.4 9E-14 3.1E-18 71.2 1.6 45 13-61 23-68 (75)
61 2bay_A PRE-mRNA splicing facto 99.4 2.6E-13 9E-18 67.2 2.6 56 15-70 3-59 (61)
62 2ea5_A Cell growth regulator w 99.4 5.9E-13 2E-17 67.1 3.9 54 11-70 11-65 (68)
63 2yho_A E3 ubiquitin-protein li 99.3 3.9E-13 1.3E-17 69.6 1.9 53 13-71 16-69 (79)
64 4a0k_B E3 ubiquitin-protein li 99.3 5.8E-13 2E-17 73.5 0.4 48 15-62 48-113 (117)
65 1wim_A KIAA0161 protein; ring 99.2 1.3E-12 4.5E-17 69.4 0.8 55 13-67 3-72 (94)
66 2d8s_A Cellular modulator of i 99.2 7E-12 2.4E-16 65.0 3.1 51 12-62 12-71 (80)
67 3t6p_A Baculoviral IAP repeat- 99.1 8.7E-12 3E-16 79.5 0.6 44 14-61 294-338 (345)
68 2ct0_A Non-SMC element 1 homol 99.1 3.7E-10 1.3E-14 57.7 5.3 49 12-60 12-63 (74)
69 1vyx_A ORF K3, K3RING; zinc-bi 98.7 1.3E-08 4.3E-13 50.0 3.4 49 13-61 4-59 (60)
70 3vk6_A E3 ubiquitin-protein li 98.6 3.2E-08 1.1E-12 52.9 3.5 45 17-61 3-49 (101)
71 3k1l_B Fancl; UBC, ring, RWD, 98.6 6.3E-09 2.1E-13 66.4 0.6 49 12-60 305-372 (381)
72 3nw0_A Non-structural maintena 97.9 1.5E-05 5.1E-10 48.5 4.0 48 14-61 179-229 (238)
73 2jun_A Midline-1; B-BOX, TRIM, 97.6 3.5E-05 1.2E-09 40.8 2.2 32 14-45 2-36 (101)
74 3m62_A Ubiquitin conjugation f 97.4 0.00017 5.9E-09 51.2 4.6 57 11-67 887-944 (968)
75 2cs3_A Protein C14ORF4, MY039 96.1 0.01 3.4E-07 30.5 3.8 38 11-48 11-52 (93)
76 2ko5_A Ring finger protein Z; 95.9 0.013 4.6E-07 30.8 3.8 47 14-62 27-74 (99)
77 3i2d_A E3 SUMO-protein ligase 93.9 0.046 1.6E-06 35.3 3.0 53 13-65 247-304 (371)
78 4fo9_A E3 SUMO-protein ligase 93.7 0.06 2.1E-06 34.6 3.3 53 13-65 213-270 (360)
79 1m3v_A FLIN4, fusion of the LI 92.1 0.082 2.8E-06 28.5 2.0 49 16-64 33-84 (122)
80 2lri_C Autoimmune regulator; Z 90.7 0.23 7.9E-06 24.2 2.6 44 13-58 10-59 (66)
81 3mjh_B Early endosome antigen 90.5 0.039 1.3E-06 23.7 -0.3 16 13-28 3-18 (34)
82 2l5u_A Chromodomain-helicase-D 88.5 0.48 1.6E-05 22.6 2.7 46 10-57 6-57 (61)
83 1vfy_A Phosphatidylinositol-3- 88.0 0.2 7E-06 24.8 1.2 29 15-43 11-43 (73)
84 2k16_A Transcription initiatio 87.6 0.19 6.6E-06 24.8 1.0 49 12-60 15-70 (75)
85 2xjy_A Rhombotin-2; oncoprotei 87.1 0.55 1.9E-05 25.3 2.7 49 14-62 28-79 (131)
86 2l43_A N-teminal domain from h 86.8 0.3 1E-05 25.1 1.5 54 10-63 20-80 (88)
87 1weo_A Cellulose synthase, cat 86.1 2.4 8.1E-05 22.1 5.0 48 14-61 15-70 (93)
88 3t7l_A Zinc finger FYVE domain 86.1 0.44 1.5E-05 24.5 1.9 32 14-45 19-54 (90)
89 1rut_X Flinc4, fusion protein 85.5 0.37 1.2E-05 27.8 1.5 49 14-62 31-82 (188)
90 2yw8_A RUN and FYVE domain-con 85.2 0.29 1E-05 24.7 0.9 31 14-44 18-52 (82)
91 1z2q_A LM5-1; membrane protein 85.0 0.31 1.1E-05 24.7 1.0 31 14-44 20-54 (84)
92 1joc_A EEA1, early endosomal a 84.6 0.29 1E-05 26.8 0.8 30 15-44 69-102 (125)
93 1x4u_A Zinc finger, FYVE domai 84.3 0.31 1.1E-05 24.7 0.8 32 12-43 11-46 (84)
94 2e6r_A Jumonji/ARID domain-con 82.5 0.12 3.9E-06 26.9 -1.3 54 5-58 6-66 (92)
95 1y02_A CARP2, FYVE-ring finger 82.4 0.066 2.3E-06 29.3 -2.4 45 12-56 16-64 (120)
96 1wfk_A Zinc finger, FYVE domai 82.0 0.52 1.8E-05 24.2 1.1 49 12-60 6-65 (88)
97 1f62_A Transcription factor WS 81.6 0.55 1.9E-05 21.3 1.0 41 17-57 2-49 (51)
98 1z60_A TFIIH basal transcripti 79.8 1.4 4.7E-05 21.1 2.1 39 17-55 17-58 (59)
99 1wil_A KIAA1045 protein; ring 78.9 2.3 7.8E-05 21.9 2.8 36 9-45 9-47 (89)
100 1wd2_A Ariadne-1 protein homol 78.6 0.097 3.3E-06 25.1 -2.3 32 16-47 7-46 (60)
101 3zyq_A Hepatocyte growth facto 78.6 0.95 3.2E-05 27.0 1.6 32 13-44 162-197 (226)
102 1x62_A C-terminal LIM domain p 78.3 1.3 4.4E-05 21.7 1.8 40 13-60 13-52 (79)
103 2o35_A Hypothetical protein DU 77.8 0.94 3.2E-05 24.0 1.2 12 37-48 43-54 (105)
104 1mm2_A MI2-beta; PHD, zinc fin 77.7 0.3 1E-05 23.3 -0.6 46 11-58 5-56 (61)
105 2rgt_A Fusion of LIM/homeobox 77.6 4.3 0.00015 22.8 4.1 47 14-62 32-78 (169)
106 1dvp_A HRS, hepatocyte growth 77.6 0.68 2.3E-05 27.5 0.7 31 13-43 159-193 (220)
107 3fyb_A Protein of unknown func 77.4 0.98 3.3E-05 23.9 1.2 11 37-47 42-52 (104)
108 2lbm_A Transcriptional regulat 77.3 2.7 9.4E-05 23.5 3.1 46 12-57 60-116 (142)
109 1fp0_A KAP-1 corepressor; PHD 75.2 1.1 3.8E-05 23.1 1.0 48 9-58 19-72 (88)
110 2cor_A Pinch protein; LIM doma 74.6 2.8 9.6E-05 20.5 2.5 40 15-62 15-54 (79)
111 2xqn_T Testin, TESS; metal-bin 74.4 3 0.0001 22.1 2.8 46 15-62 30-76 (126)
112 2lv9_A Histone-lysine N-methyl 73.0 0.77 2.6E-05 24.0 0.1 44 13-57 26-75 (98)
113 2fiy_A Protein FDHE homolog; F 72.7 0.32 1.1E-05 30.6 -1.6 46 13-58 180-231 (309)
114 1x64_A Alpha-actinin-2 associa 72.6 3.8 0.00013 20.4 2.8 41 14-62 24-64 (89)
115 1wg2_A Zinc finger (AN1-like) 72.3 4.8 0.00016 19.5 2.9 32 8-39 8-40 (64)
116 1nyp_A Pinch protein; LIM doma 70.1 1.8 6.1E-05 20.3 1.1 37 16-60 6-42 (66)
117 2cup_A Skeletal muscle LIM-pro 69.6 5.1 0.00018 20.2 2.9 46 15-62 33-79 (101)
118 1wen_A Inhibitor of growth fam 69.1 4.2 0.00014 19.9 2.4 44 12-59 13-66 (71)
119 2dar_A PDZ and LIM domain prot 68.8 2.3 7.9E-05 21.3 1.4 39 15-61 25-63 (90)
120 2yql_A PHD finger protein 21A; 68.7 0.37 1.3E-05 22.5 -1.6 43 12-56 6-54 (56)
121 2d8z_A Four and A half LIM dom 68.7 2.4 8.2E-05 20.0 1.4 11 17-27 7-17 (70)
122 1wyh_A SLIM 2, skeletal muscle 68.5 2.8 9.6E-05 19.8 1.6 25 17-41 7-33 (72)
123 1x63_A Skeletal muscle LIM-pro 68.3 6.7 0.00023 19.0 3.1 39 16-62 16-56 (82)
124 1xwh_A Autoimmune regulator; P 67.2 0.57 2E-05 22.6 -1.1 45 13-58 6-55 (66)
125 2d8x_A Protein pinch; LIM doma 67.2 2 6.8E-05 20.4 0.9 12 17-28 7-18 (70)
126 2jmo_A Parkin; IBR, E3 ligase, 67.2 0.18 6E-06 25.5 -3.1 33 15-47 25-70 (80)
127 2cuq_A Four and A half LIM dom 67.0 6 0.0002 19.1 2.7 37 16-60 16-52 (80)
128 1wff_A Riken cDNA 2810002D23 p 66.8 6.9 0.00024 20.0 2.9 27 14-40 24-52 (85)
129 1x4w_A Hypothetical protein FL 66.7 3.1 0.0001 20.4 1.5 30 11-40 11-44 (67)
130 2jtn_A LIM domain-binding prot 66.2 3.6 0.00012 23.4 2.0 45 16-62 88-132 (182)
131 3mpx_A FYVE, rhogef and PH dom 66.0 1.2 4.2E-05 28.5 0.0 31 15-45 375-409 (434)
132 2gmg_A Hypothetical protein PF 64.4 1.1 3.9E-05 23.9 -0.3 25 30-59 70-94 (105)
133 2d8v_A Zinc finger FYVE domain 64.2 2.5 8.7E-05 20.7 0.9 33 13-46 6-39 (67)
134 2puy_A PHD finger protein 21A; 63.6 0.39 1.3E-05 22.7 -2.1 44 14-59 4-53 (60)
135 1x61_A Thyroid receptor intera 63.3 10 0.00036 17.7 3.4 31 16-46 34-65 (72)
136 2jrp_A Putative cytoplasmic pr 63.0 0.1 3.4E-06 26.7 -4.4 11 16-26 3-13 (81)
137 1wfh_A Zinc finger (AN1-like) 62.9 8.3 0.00028 18.7 2.6 30 11-40 11-41 (64)
138 3ql9_A Transcriptional regulat 62.9 8.8 0.0003 21.1 3.1 46 12-57 54-110 (129)
139 1wfl_A Zinc finger protein 216 62.4 9.8 0.00033 19.0 2.9 26 14-39 24-50 (74)
140 1wem_A Death associated transc 61.4 11 0.00038 18.3 3.1 48 10-58 11-70 (76)
141 2ku3_A Bromodomain-containing 61.2 9.4 0.00032 18.6 2.7 47 11-57 12-65 (71)
142 1v6g_A Actin binding LIM prote 60.9 2.4 8.3E-05 20.7 0.5 37 17-61 17-53 (81)
143 1b8t_A Protein (CRP1); LIM dom 60.7 11 0.00036 21.6 3.3 35 14-48 33-68 (192)
144 3ttc_A HYPF, transcriptional r 60.7 4.9 0.00017 27.9 2.1 49 11-59 13-99 (657)
145 1x4l_A Skeletal muscle LIM-pro 60.5 4.8 0.00016 19.0 1.6 37 16-60 6-46 (72)
146 1x68_A FHL5 protein; four-and- 60.4 3.1 0.00011 20.0 0.9 37 16-60 6-46 (76)
147 2zet_C Melanophilin; complex, 60.0 3.2 0.00011 23.5 1.0 44 14-58 67-117 (153)
148 1wep_A PHF8; structural genomi 59.8 7.1 0.00024 19.2 2.2 51 10-61 7-66 (79)
149 1wfe_A Riken cDNA 2310008M20 p 59.1 9.7 0.00033 19.4 2.6 30 10-39 20-52 (86)
150 2cu8_A Cysteine-rich protein 2 59.1 2.7 9.3E-05 20.2 0.5 38 16-61 10-48 (76)
151 2ehe_A Four and A half LIM dom 58.8 12 0.00042 18.0 3.0 39 16-62 16-56 (82)
152 1wig_A KIAA1808 protein; LIM d 58.6 2.9 9.9E-05 20.1 0.6 25 17-41 7-31 (73)
153 2vpb_A Hpygo1, pygopus homolog 58.5 4.9 0.00017 19.3 1.4 31 12-42 5-40 (65)
154 2dlo_A Thyroid receptor-intera 58.5 2.4 8.2E-05 20.7 0.3 37 16-60 16-52 (81)
155 2pv0_B DNA (cytosine-5)-methyl 58.4 12 0.00042 24.3 3.6 47 12-58 90-148 (386)
156 1zbd_B Rabphilin-3A; G protein 58.2 2.1 7.3E-05 23.7 0.0 46 13-58 53-107 (134)
157 2ysm_A Myeloid/lymphoid or mix 57.7 1.4 4.7E-05 23.3 -0.8 36 12-47 4-42 (111)
158 3o36_A Transcription intermedi 57.5 1.4 4.7E-05 25.4 -0.9 45 14-59 3-52 (184)
159 3vth_A Hydrogenase maturation 57.3 8.7 0.0003 27.1 2.9 50 11-60 107-194 (761)
160 2cur_A Skeletal muscle LIM-pro 56.9 14 0.00046 17.2 2.9 30 16-45 32-62 (69)
161 1x4k_A Skeletal muscle LIM-pro 56.1 4.3 0.00015 19.2 1.0 10 17-26 7-16 (72)
162 3u5n_A E3 ubiquitin-protein li 54.6 1.4 4.8E-05 25.9 -1.2 44 14-59 6-55 (207)
163 3v43_A Histone acetyltransfera 54.5 22 0.00075 18.6 3.7 30 14-43 4-42 (112)
164 2yt5_A Metal-response element- 54.0 4 0.00014 19.3 0.6 47 13-59 4-62 (66)
165 2l4z_A DNA endonuclease RBBP8, 53.0 11 0.00036 20.2 2.3 38 15-60 61-99 (123)
166 2jne_A Hypothetical protein YF 52.9 0.28 9.4E-06 26.0 -3.9 41 15-60 32-72 (101)
167 4gut_A Lysine-specific histone 52.7 7.1 0.00024 27.4 1.9 33 16-48 14-56 (776)
168 2egq_A FHL1 protein; LIM domai 52.7 9.1 0.00031 18.2 1.9 39 16-62 16-59 (77)
169 4g9i_A Hydrogenase maturation 52.6 6.7 0.00023 27.7 1.8 49 12-60 103-189 (772)
170 3a1b_A DNA (cytosine-5)-methyl 52.6 10 0.00036 21.6 2.3 43 14-57 78-133 (159)
171 2d8y_A Eplin protein; LIM doma 51.2 16 0.00055 18.1 2.7 12 15-26 15-26 (91)
172 2co8_A NEDD9 interacting prote 50.6 9.7 0.00033 18.6 1.8 42 14-63 14-56 (82)
173 1iml_A CRIP, cysteine rich int 50.6 4.3 0.00015 19.5 0.5 42 15-58 27-70 (76)
174 1wev_A Riken cDNA 1110020M19; 49.9 2.6 8.7E-05 21.5 -0.5 48 13-60 14-74 (88)
175 1weu_A Inhibitor of growth fam 48.7 6.6 0.00023 20.2 1.0 42 14-59 35-86 (91)
176 2dj7_A Actin-binding LIM prote 48.2 6.6 0.00023 19.2 0.9 40 13-60 13-53 (80)
177 1we9_A PHD finger family prote 47.9 4.5 0.00016 19.0 0.3 47 12-58 3-58 (64)
178 1x6a_A LIMK-2, LIM domain kina 47.7 23 0.00079 16.9 3.1 36 17-60 17-52 (81)
179 2lv2_A Insulinoma-associated p 47.1 25 0.00084 17.4 3.0 41 12-63 25-70 (85)
180 2iyb_E Testin, TESS, TES; LIM 46.9 4.9 0.00017 18.7 0.3 36 17-60 4-43 (65)
181 1x3h_A Leupaxin; paxillin fami 46.3 23 0.00079 16.8 2.8 37 17-61 17-53 (80)
182 2jvx_A NF-kappa-B essential mo 45.5 6.5 0.00022 15.8 0.5 11 16-26 4-14 (28)
183 2lq6_A Bromodomain-containing 45.4 28 0.00095 17.5 3.1 38 8-45 10-51 (87)
184 1x4v_A Hypothetical protein LO 45.4 26 0.00088 16.8 2.8 27 14-40 11-40 (63)
185 1wfp_A Zinc finger (AN1-like) 45.3 28 0.00097 17.3 3.0 29 12-40 22-51 (74)
186 2kwj_A Zinc finger protein DPF 44.8 0.85 2.9E-05 24.4 -3.0 43 17-59 60-109 (114)
187 3asl_A E3 ubiquitin-protein li 44.4 2.5 8.4E-05 20.6 -1.0 41 17-57 20-68 (70)
188 3c5k_A HD6, histone deacetylas 43.6 15 0.00052 19.4 2.0 25 15-39 24-48 (109)
189 1j2o_A FLIN2, fusion of rhombo 42.9 24 0.00081 18.3 2.7 35 15-49 30-67 (114)
190 3vhs_A ATPase wrnip1; zinc fin 41.5 6.7 0.00023 15.5 0.3 12 51-62 8-19 (29)
191 1wys_A Riken cDNA 2310008M20 p 41.5 30 0.001 17.1 2.7 30 10-39 9-41 (75)
192 2ct7_A Ring finger protein 31; 40.7 0.69 2.3E-05 23.5 -3.6 29 17-45 27-61 (86)
193 3shb_A E3 ubiquitin-protein li 40.5 2.3 8E-05 21.2 -1.5 40 17-56 28-75 (77)
194 2ro1_A Transcription intermedi 40.2 4 0.00014 23.7 -0.7 44 16-59 3-50 (189)
195 2ffw_A Midline-1; B-BOX, ring 39.5 30 0.001 16.9 2.6 31 14-44 29-62 (78)
196 2ctu_A Zinc finger protein 483 37.5 14 0.00049 16.6 1.2 36 13-61 16-51 (73)
197 1g47_A Pinch protein; LIM doma 36.3 17 0.00057 17.2 1.3 39 15-61 11-51 (77)
198 2e6s_A E3 ubiquitin-protein li 36.1 3.2 0.00011 20.6 -1.4 40 17-56 28-75 (77)
199 2k5c_A Uncharacterized protein 35.2 4.3 0.00015 20.8 -1.0 18 50-67 9-26 (95)
200 1l8d_A DNA double-strand break 34.0 11 0.00038 19.6 0.5 13 49-61 47-59 (112)
201 2kpi_A Uncharacterized protein 33.6 20 0.00068 16.6 1.3 45 12-74 7-53 (56)
202 4gzn_C ZFP-57, zinc finger pro 33.2 37 0.0013 15.4 2.2 39 13-62 2-45 (60)
203 1erd_A Pheromone ER-2; NMR {Eu 30.4 6.7 0.00023 16.5 -0.6 15 31-45 10-24 (40)
204 2das_A Zinc finger MYM-type pr 30.0 51 0.0017 15.7 3.2 43 5-47 10-57 (62)
205 3ask_A E3 ubiquitin-protein li 29.7 6.3 0.00021 23.8 -1.1 41 17-57 176-224 (226)
206 3f6q_B LIM and senescent cell 29.7 24 0.00083 16.2 1.3 40 15-62 11-52 (72)
207 2csz_A Synaptotagmin-like prot 29.6 17 0.00058 18.2 0.7 31 12-42 22-57 (76)
208 1a7i_A QCRP2 (LIM1); LIM domai 28.7 15 0.00051 17.7 0.4 28 16-43 35-63 (81)
209 2l3k_A Rhombotin-2, linker, LI 28.0 30 0.001 18.1 1.6 34 14-47 35-70 (123)
210 2vnf_A ING 4, P29ING4, inhibit 27.8 10 0.00036 17.7 -0.3 40 14-57 9-58 (60)
211 2g45_A Ubiquitin carboxyl-term 27.3 51 0.0017 17.9 2.4 25 15-39 34-58 (129)
212 1loi_A Cyclic 3',5'-AMP specif 27.2 2.7 9.2E-05 16.2 -2.0 10 37-46 7-16 (26)
213 2a20_A Regulating synaptic mem 26.9 28 0.00095 16.6 1.1 14 11-24 5-18 (62)
214 3d00_A Tungsten formylmethanof 26.3 24 0.00083 20.5 1.0 26 13-43 161-186 (191)
215 2jmi_A Protein YNG1, ING1 homo 26.2 17 0.00059 18.6 0.3 44 11-58 22-76 (90)
216 2uzg_A Ubiquitin carboxyl-term 25.2 29 0.001 17.8 1.1 26 15-40 25-53 (97)
217 3o70_A PHD finger protein 13; 24.7 21 0.00072 17.1 0.5 47 10-57 14-66 (68)
218 1lv3_A Hypothetical protein YA 24.5 20 0.00068 17.5 0.4 11 50-60 10-20 (68)
219 3c6w_A P28ING5, inhibitor of g 23.9 6.4 0.00022 18.4 -1.5 41 13-57 7-57 (59)
220 1zfo_A LAsp-1; LIM domain, zin 23.4 41 0.0014 13.2 1.2 13 50-62 4-16 (31)
221 4gne_A Histone-lysine N-methyl 22.4 37 0.0013 17.9 1.2 34 9-43 9-45 (107)
222 2m0e_A Zinc finger and BTB dom 22.1 36 0.0012 11.5 0.9 10 51-60 4-13 (29)
223 2kvh_A Zinc finger and BTB dom 22.0 35 0.0012 11.6 0.8 11 16-26 4-14 (27)
224 1wvk_A AT2G23090/F21P24.15; st 21.8 45 0.0015 17.0 1.4 14 13-26 43-56 (86)
225 2kvf_A Zinc finger and BTB dom 21.4 36 0.0012 11.6 0.8 10 16-25 4-13 (28)
226 1ard_A Yeast transcription fac 20.9 40 0.0014 11.5 0.9 12 16-27 3-14 (29)
227 2lcq_A Putative toxin VAPC6; P 20.8 13 0.00046 20.7 -0.8 10 50-59 149-158 (165)
228 2jr6_A UPF0434 protein NMA0874 20.2 31 0.0011 16.7 0.6 47 12-74 5-51 (68)
No 1
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.76 E-value=1.9e-19 Score=91.33 Aligned_cols=59 Identities=36% Similarity=0.864 Sum_probs=53.0
Q ss_pred CCCcccccccccccccCc-------eecCCCChhhHHhHHHHhhCCCCcccccccccccceeeecc
Q 037842 11 VGEVRFTCGICLDTMKEE-------SSTKCGHVFCKSCIVDAIRLQGKCPTCRTRMSVRSIRRIFF 69 (78)
Q Consensus 11 ~~~~~~~C~iC~~~~~~~-------~~~~CgH~fc~~C~~~~~~~~~~CP~C~~~~~~~~~~~~~~ 69 (78)
..+++..|+||++.+.++ +.++|||.||..|+.+|+..+..||.||..+..+++.++|+
T Consensus 6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~l 71 (71)
T 3ng2_A 6 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI 71 (71)
T ss_dssp CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSCCCCCC
T ss_pred CCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhheeeccC
Confidence 445678999999999887 78899999999999999998899999999999988888764
No 2
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=9.4e-19 Score=89.26 Aligned_cols=62 Identities=26% Similarity=0.536 Sum_probs=53.4
Q ss_pred CcccCCCcccccccccccccCceec-CCCChhhHHhHHHHhhCCCCcccccccccccceeeec
Q 037842 7 GAVVVGEVRFTCGICLDTMKEESST-KCGHVFCKSCIVDAIRLQGKCPTCRTRMSVRSIRRIF 68 (78)
Q Consensus 7 ~~~~~~~~~~~C~iC~~~~~~~~~~-~CgH~fc~~C~~~~~~~~~~CP~C~~~~~~~~~~~~~ 68 (78)
......++.+.|+||++.+.+|+.+ +|||.||..|+..|+.....||+||..+...++....
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 69 (72)
T 2djb_A 7 GNLSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPLSGP 69 (72)
T ss_dssp CCCCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSCCCC
T ss_pred hhHhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcccccccC
Confidence 3445567789999999999999987 9999999999999999888999999999877666543
No 3
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.74 E-value=8.1e-19 Score=87.28 Aligned_cols=56 Identities=38% Similarity=0.942 Sum_probs=51.0
Q ss_pred cccccccccccccCc-------eecCCCChhhHHhHHHHhhCCCCcccccccccccceeeecc
Q 037842 14 VRFTCGICLDTMKEE-------SSTKCGHVFCKSCIVDAIRLQGKCPTCRTRMSVRSIRRIFF 69 (78)
Q Consensus 14 ~~~~C~iC~~~~~~~-------~~~~CgH~fc~~C~~~~~~~~~~CP~C~~~~~~~~~~~~~~ 69 (78)
++..|+||++.+.++ +.++|||.||..|+.+|+..+..||.||..+..+++.++++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~l 64 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI 64 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTCEEECCC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccceeeeeC
Confidence 467899999999876 77899999999999999998889999999999999988874
No 4
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=3.4e-18 Score=85.83 Aligned_cols=56 Identities=27% Similarity=0.663 Sum_probs=48.8
Q ss_pred ccCCCcccccccccccccCceecCCCChhhHHhHHHHhh-CCCCcccccccccccce
Q 037842 9 VVVGEVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIR-LQGKCPTCRTRMSVRSI 64 (78)
Q Consensus 9 ~~~~~~~~~C~iC~~~~~~~~~~~CgH~fc~~C~~~~~~-~~~~CP~C~~~~~~~~~ 64 (78)
.....+.+.|+||++.+.+|+.++|||.||..|+.+|+. ....||+||..+..+++
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 9 VKTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKV 65 (66)
T ss_dssp CCSCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred hhcCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence 445567899999999999999999999999999999995 45689999999887654
No 5
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.3e-18 Score=88.58 Aligned_cols=58 Identities=29% Similarity=0.572 Sum_probs=50.8
Q ss_pred ccCCCcccccccccccccCceecCCCChhhHHhHHHHhhCCCCcccccccccccceee
Q 037842 9 VVVGEVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQGKCPTCRTRMSVRSIRR 66 (78)
Q Consensus 9 ~~~~~~~~~C~iC~~~~~~~~~~~CgH~fc~~C~~~~~~~~~~CP~C~~~~~~~~~~~ 66 (78)
.....+.+.|+||++.+.+++.++|||.||..|+..|+.....||+||..+..+++.+
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 66 (71)
T 2d8t_A 9 TAPSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPEDFLDS 66 (71)
T ss_dssp CCSSSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCHHHHSC
T ss_pred cccCCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCHhhccC
Confidence 3445667899999999999999999999999999999998889999999988765544
No 6
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.73 E-value=3.4e-18 Score=88.24 Aligned_cols=57 Identities=19% Similarity=0.324 Sum_probs=50.4
Q ss_pred CCCcccccccccccccCceecCCCChhhHHhHHHHhhC-CCCcccccccccccceeee
Q 037842 11 VGEVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRL-QGKCPTCRTRMSVRSIRRI 67 (78)
Q Consensus 11 ~~~~~~~C~iC~~~~~~~~~~~CgH~fc~~C~~~~~~~-~~~CP~C~~~~~~~~~~~~ 67 (78)
...+++.|+||++.+.+|+.++|||+||..|+.+|+.. ...||.|+..+...++..+
T Consensus 4 ~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n 61 (78)
T 1t1h_A 4 EFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPN 61 (78)
T ss_dssp CCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEEC
T ss_pred CCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccC
Confidence 35668999999999999999999999999999999987 6789999999987766554
No 7
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=8e-18 Score=85.74 Aligned_cols=55 Identities=33% Similarity=0.670 Sum_probs=47.9
Q ss_pred cCCCcccccccccccccCceecCCCChhhHHhHHHHhh---CCCCcccccccccccce
Q 037842 10 VVGEVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIR---LQGKCPTCRTRMSVRSI 64 (78)
Q Consensus 10 ~~~~~~~~C~iC~~~~~~~~~~~CgH~fc~~C~~~~~~---~~~~CP~C~~~~~~~~~ 64 (78)
....+.+.|+||++.+.+|+.++|||.||..|+..|+. ....||+||..+..+++
T Consensus 15 ~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred HhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 34567789999999999999999999999999999997 35589999999887654
No 8
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.71 E-value=1.8e-17 Score=86.29 Aligned_cols=59 Identities=32% Similarity=0.763 Sum_probs=51.6
Q ss_pred cCCCcccccccccccccCceecCCCChhhHHhHHHHhhC------CCCcccccccccccceeeec
Q 037842 10 VVGEVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRL------QGKCPTCRTRMSVRSIRRIF 68 (78)
Q Consensus 10 ~~~~~~~~C~iC~~~~~~~~~~~CgH~fc~~C~~~~~~~------~~~CP~C~~~~~~~~~~~~~ 68 (78)
....+.+.|+||++.+.+|+.++|||.||..|+..|+.. ...||.||..+..+++..++
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~ 78 (85)
T 2ecw_A 14 EMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNL 78 (85)
T ss_dssp CCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECS
T ss_pred HhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCH
Confidence 345677899999999999999999999999999999987 56899999999887776654
No 9
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.70 E-value=7.1e-18 Score=86.44 Aligned_cols=55 Identities=29% Similarity=0.594 Sum_probs=47.3
Q ss_pred CcccCCCcccccccccccccCceecC-CCChhhHHhHHHHhhCC--CCcccccccccc
Q 037842 7 GAVVVGEVRFTCGICLDTMKEESSTK-CGHVFCKSCIVDAIRLQ--GKCPTCRTRMSV 61 (78)
Q Consensus 7 ~~~~~~~~~~~C~iC~~~~~~~~~~~-CgH~fc~~C~~~~~~~~--~~CP~C~~~~~~ 61 (78)
.......+++.|+||++.+.+|+.++ |||.||..|+..|+... ..||+||..+..
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 7 GEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp SCCCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred cccccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 34555677899999999999999999 99999999999999864 589999997543
No 10
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.70 E-value=3e-18 Score=88.49 Aligned_cols=60 Identities=28% Similarity=0.621 Sum_probs=51.2
Q ss_pred ccCCCcccccccccccccCceecCCCChhhHHhHHHHhhC-------CCCcccccccccccceeeec
Q 037842 9 VVVGEVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRL-------QGKCPTCRTRMSVRSIRRIF 68 (78)
Q Consensus 9 ~~~~~~~~~C~iC~~~~~~~~~~~CgH~fc~~C~~~~~~~-------~~~CP~C~~~~~~~~~~~~~ 68 (78)
.....+.+.|+||++.+.+|+.++|||.||..|+..|+.. ...||.||..+...++..++
T Consensus 6 ~~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~ 72 (79)
T 2egp_A 6 SGNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQ 72 (79)
T ss_dssp SCCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCS
T ss_pred HhhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCH
Confidence 3445678999999999999999999999999999999886 55899999999877665544
No 11
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.70 E-value=7.1e-18 Score=90.90 Aligned_cols=57 Identities=26% Similarity=0.653 Sum_probs=50.7
Q ss_pred CCcccccccccccccCcee-cCCCChhhHHhHHHHhhCC-CCcccccccccccceeeec
Q 037842 12 GEVRFTCGICLDTMKEESS-TKCGHVFCKSCIVDAIRLQ-GKCPTCRTRMSVRSIRRIF 68 (78)
Q Consensus 12 ~~~~~~C~iC~~~~~~~~~-~~CgH~fc~~C~~~~~~~~-~~CP~C~~~~~~~~~~~~~ 68 (78)
..+.+.|+||++.+.+|+. ++|||.||..|+..|+... ..||.||..+...++....
T Consensus 19 l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~ 77 (100)
T 3lrq_A 19 IAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCR 77 (100)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECT
T ss_pred CCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhH
Confidence 4467899999999999999 8999999999999999987 6999999999887776653
No 12
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.70 E-value=1.3e-17 Score=83.41 Aligned_cols=57 Identities=26% Similarity=0.608 Sum_probs=49.4
Q ss_pred cccccccccc-cccCc----eecCCCChhhHHhHHHHhhC-CCCcccccccccccceeeeccC
Q 037842 14 VRFTCGICLD-TMKEE----SSTKCGHVFCKSCIVDAIRL-QGKCPTCRTRMSVRSIRRIFFP 70 (78)
Q Consensus 14 ~~~~C~iC~~-~~~~~----~~~~CgH~fc~~C~~~~~~~-~~~CP~C~~~~~~~~~~~~~~~ 70 (78)
++..|+||++ .+.++ +.++|||+||..|+.+|+.. ...||.||..+..+++...+++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~ 64 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQLFE 64 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEECCC
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccceeeccc
Confidence 4578999999 88888 46799999999999999765 4579999999999999888775
No 13
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=9.6e-18 Score=84.45 Aligned_cols=55 Identities=38% Similarity=0.891 Sum_probs=47.7
Q ss_pred CcccCCCcccccccccccccCc-------eecCCCChhhHHhHHHHhhCCCCcccccccccc
Q 037842 7 GAVVVGEVRFTCGICLDTMKEE-------SSTKCGHVFCKSCIVDAIRLQGKCPTCRTRMSV 61 (78)
Q Consensus 7 ~~~~~~~~~~~C~iC~~~~~~~-------~~~~CgH~fc~~C~~~~~~~~~~CP~C~~~~~~ 61 (78)
.......+...|+||++.+.++ +.++|||.||..|+..|+.....||+||..+..
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 7 GTGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CCCCCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred ccccCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 3445566788999999999887 788999999999999999988899999988764
No 14
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=2.5e-17 Score=85.57 Aligned_cols=51 Identities=31% Similarity=0.729 Sum_probs=46.4
Q ss_pred cCCCcccccccccccccCceecCCCChhhHHhHHHHhhCCCCccccccccc
Q 037842 10 VVGEVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQGKCPTCRTRMS 60 (78)
Q Consensus 10 ~~~~~~~~C~iC~~~~~~~~~~~CgH~fc~~C~~~~~~~~~~CP~C~~~~~ 60 (78)
....+.+.|+||++.+.+|+.++|||+||..|+..|+.....||+||..+.
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 10 EEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp SCCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred ccCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 445567899999999999999999999999999999998889999999975
No 15
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.70 E-value=2.4e-17 Score=86.65 Aligned_cols=59 Identities=14% Similarity=0.099 Sum_probs=52.6
Q ss_pred ccCCCcccccccccccccCceecCCCChhhHHhHHHHhhCCCCcccccccccccceeee
Q 037842 9 VVVGEVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQGKCPTCRTRMSVRSIRRI 67 (78)
Q Consensus 9 ~~~~~~~~~C~iC~~~~~~~~~~~CgH~fc~~C~~~~~~~~~~CP~C~~~~~~~~~~~~ 67 (78)
.....+.+.|+||++.+.+|+.++|||+||+.||..|+.....||.|+..+...++..+
T Consensus 8 ~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~pn 66 (85)
T 2kr4_A 8 YSDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTESMLEPV 66 (85)
T ss_dssp CTTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCEEC
T ss_pred hhcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCChHhcchH
Confidence 34456789999999999999999999999999999999988899999999988777654
No 16
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.69 E-value=2.9e-17 Score=87.02 Aligned_cols=58 Identities=28% Similarity=0.546 Sum_probs=47.9
Q ss_pred cccCCCcccccccccccccCceecC-CCChhhHHhHHHHhhCC--CCcccccccc-ccccee
Q 037842 8 AVVVGEVRFTCGICLDTMKEESSTK-CGHVFCKSCIVDAIRLQ--GKCPTCRTRM-SVRSIR 65 (78)
Q Consensus 8 ~~~~~~~~~~C~iC~~~~~~~~~~~-CgH~fc~~C~~~~~~~~--~~CP~C~~~~-~~~~~~ 65 (78)
......+++.|+||++.+.+|+.++ |||+||..|+..|+... ..||.||..+ ....+.
T Consensus 6 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~ 67 (92)
T 3ztg_A 6 EDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALI 67 (92)
T ss_dssp SCCCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCE
T ss_pred ccccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccC
Confidence 3445667899999999999999999 99999999999998743 5899999987 333443
No 17
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.6e-17 Score=84.14 Aligned_cols=58 Identities=28% Similarity=0.533 Sum_probs=49.6
Q ss_pred cccCCCcccccccccccccCceecCCCChhhHHhHHHHhhCCCCcccccccccccceee
Q 037842 8 AVVVGEVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQGKCPTCRTRMSVRSIRR 66 (78)
Q Consensus 8 ~~~~~~~~~~C~iC~~~~~~~~~~~CgH~fc~~C~~~~~~~~~~CP~C~~~~~~~~~~~ 66 (78)
......+...|+||++.+.+ +.++|||.||..|+.+|+.....||+||..+...+...
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 65 (70)
T 2ecn_A 8 RVKQLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANESS 65 (70)
T ss_dssp CCCCCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCCCCC
T ss_pred hhhcCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCCccc
Confidence 34456677899999999999 88999999999999999998889999999988655443
No 18
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=2.6e-17 Score=85.65 Aligned_cols=59 Identities=32% Similarity=0.727 Sum_probs=51.1
Q ss_pred cCCCcccccccccccccCceecCCCChhhHHhHHHHhhC------CCCcccccccccccceeeec
Q 037842 10 VVGEVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRL------QGKCPTCRTRMSVRSIRRIF 68 (78)
Q Consensus 10 ~~~~~~~~C~iC~~~~~~~~~~~CgH~fc~~C~~~~~~~------~~~CP~C~~~~~~~~~~~~~ 68 (78)
....+.+.|+||++.+.+|+.++|||.||..|+..|+.. ...||.||..+...++..++
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~ 78 (85)
T 2ecv_A 14 VNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNR 78 (85)
T ss_dssp CCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSC
T ss_pred HHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccH
Confidence 345567899999999999999999999999999999876 67899999999887766554
No 19
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=2.9e-17 Score=86.21 Aligned_cols=57 Identities=23% Similarity=0.650 Sum_probs=49.0
Q ss_pred cccCCCcccccccccccccC----ceecCCCChhhHHhHHHHhhCC---CCcccccccccccce
Q 037842 8 AVVVGEVRFTCGICLDTMKE----ESSTKCGHVFCKSCIVDAIRLQ---GKCPTCRTRMSVRSI 64 (78)
Q Consensus 8 ~~~~~~~~~~C~iC~~~~~~----~~~~~CgH~fc~~C~~~~~~~~---~~CP~C~~~~~~~~~ 64 (78)
......+.+.|+||++.+.+ ++.++|||.||..|+..|+... ..||.||..+...++
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~i 71 (88)
T 2ct2_A 8 NLDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITSL 71 (88)
T ss_dssp SCCCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSST
T ss_pred ChhhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchhH
Confidence 44556678899999999998 8899999999999999999875 689999999876544
No 20
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.67 E-value=5.7e-17 Score=83.58 Aligned_cols=60 Identities=22% Similarity=0.499 Sum_probs=50.3
Q ss_pred cccCCCcccccccccccccCc---eecCCCChhhHHhHHHHhhCCCCcccccccccccceeee
Q 037842 8 AVVVGEVRFTCGICLDTMKEE---SSTKCGHVFCKSCIVDAIRLQGKCPTCRTRMSVRSIRRI 67 (78)
Q Consensus 8 ~~~~~~~~~~C~iC~~~~~~~---~~~~CgH~fc~~C~~~~~~~~~~CP~C~~~~~~~~~~~~ 67 (78)
......+...|+||++.+.++ ..++|||.||..|+.+|+.....||+||..+...++...
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 8 TEEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTATN 70 (78)
T ss_dssp CCTTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSCCC
T ss_pred CcccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCcccCCC
Confidence 444556678999999999865 456999999999999999988899999999987766554
No 21
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.67 E-value=1.7e-17 Score=93.84 Aligned_cols=50 Identities=30% Similarity=0.761 Sum_probs=45.5
Q ss_pred CcccccccccccccCceecCCCChhhHHhHHHHhhCCCCccccccccccc
Q 037842 13 EVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQGKCPTCRTRMSVR 62 (78)
Q Consensus 13 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~C~~~~~~~~~~CP~C~~~~~~~ 62 (78)
++++.|+||++.+.+|+.++|||.||..|+..|+.....||.||..+...
T Consensus 51 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 51 ENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSK 100 (138)
T ss_dssp HHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred cccCCCcccCcccCCceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence 34578999999999999999999999999999999989999999988643
No 22
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.66 E-value=1.1e-16 Score=86.16 Aligned_cols=57 Identities=16% Similarity=0.062 Sum_probs=51.4
Q ss_pred CCCcccccccccccccCceecCCC-ChhhHHhHHHHhhCCCCcccccccccccceeee
Q 037842 11 VGEVRFTCGICLDTMKEESSTKCG-HVFCKSCIVDAIRLQGKCPTCRTRMSVRSIRRI 67 (78)
Q Consensus 11 ~~~~~~~C~iC~~~~~~~~~~~Cg-H~fc~~C~~~~~~~~~~CP~C~~~~~~~~~~~~ 67 (78)
...+++.||||++.+.+|+.++|| |+||+.||.+|+.....||.|+.++...++.++
T Consensus 18 ~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~pn 75 (98)
T 1wgm_A 18 DACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPN 75 (98)
T ss_dssp SCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEEC
T ss_pred cCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhceEc
Confidence 345689999999999999999999 999999999999988899999999987777654
No 23
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.66 E-value=8.2e-17 Score=86.90 Aligned_cols=57 Identities=12% Similarity=0.122 Sum_probs=51.5
Q ss_pred CCCcccccccccccccCceecCCCChhhHHhHHHHhhCCCCcccccccccccceeee
Q 037842 11 VGEVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQGKCPTCRTRMSVRSIRRI 67 (78)
Q Consensus 11 ~~~~~~~C~iC~~~~~~~~~~~CgH~fc~~C~~~~~~~~~~CP~C~~~~~~~~~~~~ 67 (78)
...+.+.||||++.+.+|+.++|||+||+.||..|+.....||.|+.++...++.++
T Consensus 25 ~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~pn 81 (100)
T 2kre_A 25 DAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPV 81 (100)
T ss_dssp SCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEEC
T ss_pred cCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCChhhceEC
Confidence 445689999999999999999999999999999999988899999999987777654
No 24
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.66 E-value=5e-17 Score=87.23 Aligned_cols=55 Identities=24% Similarity=0.692 Sum_probs=48.8
Q ss_pred CcccccccccccccCceec-CCCChhhHHhHHHHhhCCCCcccccccccccceeee
Q 037842 13 EVRFTCGICLDTMKEESST-KCGHVFCKSCIVDAIRLQGKCPTCRTRMSVRSIRRI 67 (78)
Q Consensus 13 ~~~~~C~iC~~~~~~~~~~-~CgH~fc~~C~~~~~~~~~~CP~C~~~~~~~~~~~~ 67 (78)
.+.+.|+||++.+.+|+.+ +|||.||..|+..|+..+..||.||..+...++..+
T Consensus 20 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n 75 (99)
T 2y43_A 20 DDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKNN 75 (99)
T ss_dssp HHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEEC
T ss_pred CCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChhhCCcC
Confidence 3568999999999999887 899999999999999988899999999987666553
No 25
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=1.5e-16 Score=79.06 Aligned_cols=46 Identities=35% Similarity=0.728 Sum_probs=40.7
Q ss_pred cCCCcccccccccccccCceecCCCChhhHHhHHHHhh---CCCCcccc
Q 037842 10 VVGEVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIR---LQGKCPTC 55 (78)
Q Consensus 10 ~~~~~~~~C~iC~~~~~~~~~~~CgH~fc~~C~~~~~~---~~~~CP~C 55 (78)
...++++.|+||++.+.+|+.++|||+||..|+.+|+. ....||+|
T Consensus 15 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 44567899999999999999999999999999999998 35589987
No 26
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.65 E-value=7.4e-17 Score=89.86 Aligned_cols=59 Identities=36% Similarity=0.876 Sum_probs=53.4
Q ss_pred CcccccccccccccCc-------eecCCCChhhHHhHHHHhhCCCCcccccccccccceeeeccCC
Q 037842 13 EVRFTCGICLDTMKEE-------SSTKCGHVFCKSCIVDAIRLQGKCPTCRTRMSVRSIRRIFFPQ 71 (78)
Q Consensus 13 ~~~~~C~iC~~~~~~~-------~~~~CgH~fc~~C~~~~~~~~~~CP~C~~~~~~~~~~~~~~~~ 71 (78)
.+.+.|+||++.+.++ +.++|||+||..|+.+|+..+..||.||..+..+.+..+++.+
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~l~i~~ 70 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYIGS 70 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEEECBCSS
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccccccccccCC
Confidence 4578999999999988 8899999999999999999989999999999998888877653
No 27
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.65 E-value=2e-16 Score=79.81 Aligned_cols=56 Identities=25% Similarity=0.573 Sum_probs=46.3
Q ss_pred CCcccCCCcccccccccccccC---ceecCCCChhhHHhHHHHhhCCCCcccccccccc
Q 037842 6 NGAVVVGEVRFTCGICLDTMKE---ESSTKCGHVFCKSCIVDAIRLQGKCPTCRTRMSV 61 (78)
Q Consensus 6 ~~~~~~~~~~~~C~iC~~~~~~---~~~~~CgH~fc~~C~~~~~~~~~~CP~C~~~~~~ 61 (78)
............|+||++.+.. ++.++|||.||..|+..|+.....||+||..+..
T Consensus 5 ~~~~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 5 GEEGTEEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEA 63 (69)
T ss_dssp STTCCSTTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred ccCcCcCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccC
Confidence 3344556667899999998853 4678999999999999999988899999988764
No 28
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.63 E-value=7e-17 Score=87.89 Aligned_cols=53 Identities=25% Similarity=0.618 Sum_probs=47.8
Q ss_pred cCCCcccccccccccccCceec-CCCChhhHHhHHHHhhCCCCccccccccccc
Q 037842 10 VVGEVRFTCGICLDTMKEESST-KCGHVFCKSCIVDAIRLQGKCPTCRTRMSVR 62 (78)
Q Consensus 10 ~~~~~~~~C~iC~~~~~~~~~~-~CgH~fc~~C~~~~~~~~~~CP~C~~~~~~~ 62 (78)
....+++.|+||++.+.+|+.+ +|||+||..|+..|+.....||.||..+...
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 10 TELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp HHHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred hccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 3456789999999999999987 9999999999999999889999999998754
No 29
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.63 E-value=1e-16 Score=89.06 Aligned_cols=49 Identities=33% Similarity=0.715 Sum_probs=44.4
Q ss_pred CcccccccccccccCceecCCCChhhHHhHHHHhhCCC-Ccccccccccc
Q 037842 13 EVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQG-KCPTCRTRMSV 61 (78)
Q Consensus 13 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~C~~~~~~~~~-~CP~C~~~~~~ 61 (78)
.+.+.|+||++.+.+|+.++|||+||..|+..|+.... .||.||..+..
T Consensus 50 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 50 EETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred ccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 45688999999999999999999999999999998544 89999999876
No 30
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.63 E-value=1.7e-16 Score=87.67 Aligned_cols=58 Identities=36% Similarity=0.734 Sum_probs=50.3
Q ss_pred ccCCCcccccccccccccCceecCCCChhhHHhHHHHhhCCC-Ccccccccccccceee
Q 037842 9 VVVGEVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQG-KCPTCRTRMSVRSIRR 66 (78)
Q Consensus 9 ~~~~~~~~~C~iC~~~~~~~~~~~CgH~fc~~C~~~~~~~~~-~CP~C~~~~~~~~~~~ 66 (78)
.....+.+.|+||++.+.+|+.++|||+||..|+..|+.... .||.||..+...++.+
T Consensus 12 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~ 70 (118)
T 3hct_A 12 DPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFP 70 (118)
T ss_dssp SSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEE
T ss_pred ccCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhccc
Confidence 345667899999999999999999999999999999998755 8999999998766544
No 31
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=5.2e-16 Score=75.71 Aligned_cols=48 Identities=38% Similarity=0.812 Sum_probs=40.8
Q ss_pred cccCCCcccccccccccccCceecCCCChhhHHhHHHHhh---CCCCcccc
Q 037842 8 AVVVGEVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIR---LQGKCPTC 55 (78)
Q Consensus 8 ~~~~~~~~~~C~iC~~~~~~~~~~~CgH~fc~~C~~~~~~---~~~~CP~C 55 (78)
......+.+.|+||++.+.+|+.++|||.||..|+.+|+. ....||+|
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 8 ALENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSSCSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred HhhccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 3445567789999999999999999999999999999954 45689987
No 32
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.61 E-value=2.9e-16 Score=85.62 Aligned_cols=55 Identities=36% Similarity=0.899 Sum_probs=48.1
Q ss_pred CcccccccccccccCceecCCCChhhHHhHHHHhhCCC---Ccccccccccccceeee
Q 037842 13 EVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQG---KCPTCRTRMSVRSIRRI 67 (78)
Q Consensus 13 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~C~~~~~~~~~---~CP~C~~~~~~~~~~~~ 67 (78)
.+.+.|+||++.+.+|+.++|||.||..|+..|+.... .||.||..+...++...
T Consensus 19 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~ 76 (112)
T 1jm7_A 19 QKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQES 76 (112)
T ss_dssp HHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCC
T ss_pred cCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCcc
Confidence 35678999999999999999999999999999998653 89999999987776554
No 33
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.61 E-value=2.9e-16 Score=87.46 Aligned_cols=60 Identities=37% Similarity=0.917 Sum_probs=53.7
Q ss_pred cCCCcccccccccccccCc-------eecCCCChhhHHhHHHHhhCCCCcccccccccccceeeecc
Q 037842 10 VVGEVRFTCGICLDTMKEE-------SSTKCGHVFCKSCIVDAIRLQGKCPTCRTRMSVRSIRRIFF 69 (78)
Q Consensus 10 ~~~~~~~~C~iC~~~~~~~-------~~~~CgH~fc~~C~~~~~~~~~~CP~C~~~~~~~~~~~~~~ 69 (78)
...++...|+||++.+.++ +.++|||.||..|+.+|+...+.||+||..+..+++.++|+
T Consensus 67 ~i~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~ 133 (133)
T 4ap4_A 67 YIGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI 133 (133)
T ss_dssp BCSSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGGEEEECC
T ss_pred ccCCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhcceeeeC
Confidence 3456778999999999876 77899999999999999999999999999999999998874
No 34
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.60 E-value=3.1e-16 Score=75.88 Aligned_cols=48 Identities=25% Similarity=0.672 Sum_probs=42.1
Q ss_pred CcccccccccccccC---ceecC-CCChhhHHhHHHHhhCCCCccccccccc
Q 037842 13 EVRFTCGICLDTMKE---ESSTK-CGHVFCKSCIVDAIRLQGKCPTCRTRMS 60 (78)
Q Consensus 13 ~~~~~C~iC~~~~~~---~~~~~-CgH~fc~~C~~~~~~~~~~CP~C~~~~~ 60 (78)
+++..|+||++.+.+ ++.++ |||.||..|+.+|+..+..||+||..+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 456789999999987 56676 9999999999999999899999998764
No 35
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=5.2e-16 Score=79.21 Aligned_cols=54 Identities=22% Similarity=0.616 Sum_probs=45.2
Q ss_pred cccCCCcccccccccccccCcee---cCCCChhhHHhHHHHhhCCCCcccccccccc
Q 037842 8 AVVVGEVRFTCGICLDTMKEESS---TKCGHVFCKSCIVDAIRLQGKCPTCRTRMSV 61 (78)
Q Consensus 8 ~~~~~~~~~~C~iC~~~~~~~~~---~~CgH~fc~~C~~~~~~~~~~CP~C~~~~~~ 61 (78)
......++..|+||++.+.++.. ++|||.||..|+.+|+.....||+||..+..
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 8 KVKELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp CCCCCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred ccccCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence 34455667899999999987643 4999999999999999988899999988763
No 36
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=2.9e-16 Score=80.47 Aligned_cols=50 Identities=20% Similarity=0.563 Sum_probs=44.1
Q ss_pred CCcccccccccccccCc---eecCCCChhhHHhHHHHhhCCCCcccccccccc
Q 037842 12 GEVRFTCGICLDTMKEE---SSTKCGHVFCKSCIVDAIRLQGKCPTCRTRMSV 61 (78)
Q Consensus 12 ~~~~~~C~iC~~~~~~~---~~~~CgH~fc~~C~~~~~~~~~~CP~C~~~~~~ 61 (78)
..+...|+||++.+.++ +.++|||.||..|+..|+.....||+||..+..
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 44668899999999877 667999999999999999988899999988764
No 37
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.60 E-value=7.6e-16 Score=81.65 Aligned_cols=50 Identities=26% Similarity=0.615 Sum_probs=43.8
Q ss_pred CCcccccccccccccC---ceecCCCChhhHHhHHHHhhCCCCcccccccccc
Q 037842 12 GEVRFTCGICLDTMKE---ESSTKCGHVFCKSCIVDAIRLQGKCPTCRTRMSV 61 (78)
Q Consensus 12 ~~~~~~C~iC~~~~~~---~~~~~CgH~fc~~C~~~~~~~~~~CP~C~~~~~~ 61 (78)
..++..|+||++.+.+ ++.++|||.||..|+..|+.....||+||..+..
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 4466789999999887 5678999999999999999998999999988764
No 38
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.59 E-value=1.5e-16 Score=87.35 Aligned_cols=53 Identities=30% Similarity=0.760 Sum_probs=46.7
Q ss_pred ccCCCcccccccccccccCceecCCCChhhHHhHHHHhhC-CCCcccccccccc
Q 037842 9 VVVGEVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRL-QGKCPTCRTRMSV 61 (78)
Q Consensus 9 ~~~~~~~~~C~iC~~~~~~~~~~~CgH~fc~~C~~~~~~~-~~~CP~C~~~~~~ 61 (78)
.....+++.|+||++.+.+|+.++|||+||..|+..|+.. ...||.||..+..
T Consensus 9 ~~~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 9 AIPSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp CCCCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred ccCCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 4456678999999999999999999999999999999876 5689999998763
No 39
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.59 E-value=3.8e-16 Score=75.51 Aligned_cols=48 Identities=25% Similarity=0.659 Sum_probs=41.9
Q ss_pred CcccccccccccccC----ceecCCCChhhHHhHHHHhhCCCCccccccccc
Q 037842 13 EVRFTCGICLDTMKE----ESSTKCGHVFCKSCIVDAIRLQGKCPTCRTRMS 60 (78)
Q Consensus 13 ~~~~~C~iC~~~~~~----~~~~~CgH~fc~~C~~~~~~~~~~CP~C~~~~~ 60 (78)
.++..|+||++.+.+ ++.++|||.||..|+.+|+.....||+||..+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 356789999999865 567899999999999999998899999998764
No 40
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.59 E-value=4.6e-16 Score=85.53 Aligned_cols=54 Identities=26% Similarity=0.738 Sum_probs=47.9
Q ss_pred CcccccccccccccCceecCCCChhhHHhHHHHhhC-CCCcccccccccccceee
Q 037842 13 EVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRL-QGKCPTCRTRMSVRSIRR 66 (78)
Q Consensus 13 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~C~~~~~~~-~~~CP~C~~~~~~~~~~~ 66 (78)
.+.+.|+||++.+.+|+.++|||.||..|+.+|+.. ...||.||..+...++..
T Consensus 21 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~ 75 (116)
T 1rmd_A 21 VKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLES 75 (116)
T ss_dssp HHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBC
T ss_pred cCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccc
Confidence 456899999999999999999999999999999986 678999999988766543
No 41
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.59 E-value=6.2e-16 Score=88.64 Aligned_cols=50 Identities=30% Similarity=0.733 Sum_probs=45.3
Q ss_pred CcccccccccccccCceecCCCChhhHHhHHHHhhCCC-Cccccccccccc
Q 037842 13 EVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQG-KCPTCRTRMSVR 62 (78)
Q Consensus 13 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~C~~~~~~~~~-~CP~C~~~~~~~ 62 (78)
.+.+.|+||++.+.+|+.++|||+||..|+..|+.... .||+||..+...
T Consensus 76 ~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 76 EQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred ccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 35689999999999999999999999999999998754 899999998865
No 42
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.58 E-value=5.3e-16 Score=77.99 Aligned_cols=48 Identities=33% Similarity=0.721 Sum_probs=43.2
Q ss_pred CcccccccccccccCc-eecCCCChhhHHhHHHHhhCCCCccccccccc
Q 037842 13 EVRFTCGICLDTMKEE-SSTKCGHVFCKSCIVDAIRLQGKCPTCRTRMS 60 (78)
Q Consensus 13 ~~~~~C~iC~~~~~~~-~~~~CgH~fc~~C~~~~~~~~~~CP~C~~~~~ 60 (78)
+....|+||++.+.++ +.++|||.||..|+.+|+.....||.||..+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 3 TVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred CCCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 3456899999999987 67899999999999999998889999999876
No 43
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=4.4e-15 Score=77.23 Aligned_cols=51 Identities=25% Similarity=0.570 Sum_probs=43.0
Q ss_pred cccccccccccccC--------------ceec-CCCChhhHHhHHHHhhCCCCcccccccccccce
Q 037842 14 VRFTCGICLDTMKE--------------ESST-KCGHVFCKSCIVDAIRLQGKCPTCRTRMSVRSI 64 (78)
Q Consensus 14 ~~~~C~iC~~~~~~--------------~~~~-~CgH~fc~~C~~~~~~~~~~CP~C~~~~~~~~~ 64 (78)
++..|+||++.+.+ ++.+ +|||.||..|+.+|+..+..||+||+.+..+++
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~~~ 79 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQRI 79 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEEEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchhhc
Confidence 56779999999876 3344 599999999999999999999999999876554
No 44
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.55 E-value=1.4e-15 Score=86.41 Aligned_cols=51 Identities=20% Similarity=0.635 Sum_probs=45.2
Q ss_pred cCCCcccccccccccccCceecCCCChhhHHhHHHHhhCCC-Cccccccccc
Q 037842 10 VVGEVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQG-KCPTCRTRMS 60 (78)
Q Consensus 10 ~~~~~~~~C~iC~~~~~~~~~~~CgH~fc~~C~~~~~~~~~-~CP~C~~~~~ 60 (78)
...++.+.|+||++.+.+|+.++|||+||..|+..|+.... .||.||..+.
T Consensus 26 ~~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 26 TKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp GGCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred ccCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 34567899999999999999999999999999999998654 8999999753
No 45
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.55 E-value=8.7e-15 Score=75.77 Aligned_cols=57 Identities=21% Similarity=0.503 Sum_probs=44.9
Q ss_pred cCCCccccccccccccc--CceecC--CCChhhHHhHHHHhhC-CCCcccccccccccceee
Q 037842 10 VVGEVRFTCGICLDTMK--EESSTK--CGHVFCKSCIVDAIRL-QGKCPTCRTRMSVRSIRR 66 (78)
Q Consensus 10 ~~~~~~~~C~iC~~~~~--~~~~~~--CgH~fc~~C~~~~~~~-~~~CP~C~~~~~~~~~~~ 66 (78)
...++++.|+||++.+. ++..++ |||.||..|+..++.. ...||.||+.+....+..
T Consensus 6 ~~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~~ 67 (78)
T 1e4u_A 6 DAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPAVY 67 (78)
T ss_dssp CCCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSSCC
T ss_pred cccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCchhh
Confidence 34567789999999885 344544 9999999999998754 568999999998766543
No 46
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.55 E-value=3e-15 Score=86.95 Aligned_cols=57 Identities=35% Similarity=0.717 Sum_probs=49.6
Q ss_pred cCCCcccccccccccccCceecCCCChhhHHhHHHHhhCC-CCcccccccccccceee
Q 037842 10 VVGEVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQ-GKCPTCRTRMSVRSIRR 66 (78)
Q Consensus 10 ~~~~~~~~C~iC~~~~~~~~~~~CgH~fc~~C~~~~~~~~-~~CP~C~~~~~~~~~~~ 66 (78)
...++.+.|+||++.+.+|+.++|||+||..|+.+|+..+ ..||.||..+...++.+
T Consensus 13 ~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~ 70 (170)
T 3hcs_A 13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFP 70 (170)
T ss_dssp SCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEE
T ss_pred cCCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhh
Confidence 4566789999999999999999999999999999999764 48999999988765543
No 47
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.54 E-value=3.4e-15 Score=74.63 Aligned_cols=56 Identities=27% Similarity=0.529 Sum_probs=48.1
Q ss_pred CCcccccccccccccCceec--CCCCh-hhHHhHHHHhhCCCCcccccccccccceeeecc
Q 037842 12 GEVRFTCGICLDTMKEESST--KCGHV-FCKSCIVDAIRLQGKCPTCRTRMSVRSIRRIFF 69 (78)
Q Consensus 12 ~~~~~~C~iC~~~~~~~~~~--~CgH~-fc~~C~~~~~~~~~~CP~C~~~~~~~~~~~~~~ 69 (78)
..++..|+||++...+++.+ +|||. ||..|+..|......||+||.++. .+.++|+
T Consensus 5 ~~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~--~~i~i~~ 63 (64)
T 2vje_A 5 LNAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ--MIVLTYF 63 (64)
T ss_dssp CGGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC--EEEEEEC
T ss_pred CCCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh--ceEeeec
Confidence 44667899999999999877 99999 899999999988889999999875 5666664
No 48
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.54 E-value=2.7e-15 Score=86.82 Aligned_cols=50 Identities=40% Similarity=0.927 Sum_probs=44.4
Q ss_pred CCcccccccccccccCceec-CCCChhhHHhHHHHhhC-CCCcccccccccc
Q 037842 12 GEVRFTCGICLDTMKEESST-KCGHVFCKSCIVDAIRL-QGKCPTCRTRMSV 61 (78)
Q Consensus 12 ~~~~~~C~iC~~~~~~~~~~-~CgH~fc~~C~~~~~~~-~~~CP~C~~~~~~ 61 (78)
..+.+.|+||++.+.+|+.+ +|||.||..|+..|+.. ...||.||..+..
T Consensus 51 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 51 LHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp CHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 34567999999999999887 99999999999999997 6789999999853
No 49
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.54 E-value=6.6e-16 Score=85.12 Aligned_cols=53 Identities=28% Similarity=0.737 Sum_probs=46.2
Q ss_pred CCcccccccccccccCceec-CCCChhhHHhHHHHhhCCCCcccccccccccceee
Q 037842 12 GEVRFTCGICLDTMKEESST-KCGHVFCKSCIVDAIRLQGKCPTCRTRMSVRSIRR 66 (78)
Q Consensus 12 ~~~~~~C~iC~~~~~~~~~~-~CgH~fc~~C~~~~~~~~~~CP~C~~~~~~~~~~~ 66 (78)
..+.+.|+||++.+.+|+.+ +|||+||..|+..|+. ..||.||..+...++..
T Consensus 19 l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~~~~ 72 (117)
T 1jm7_B 19 LEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQDLKI 72 (117)
T ss_dssp HHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCSSCCC
T ss_pred chhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCccccccc
Confidence 34678999999999999999 9999999999999987 78999999987655544
No 50
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=3.2e-15 Score=79.74 Aligned_cols=56 Identities=30% Similarity=0.626 Sum_probs=47.1
Q ss_pred CCcccccccccccccCceecC-CCChhhHHhHHHHhhCC------CCccc--cccc-ccccceeee
Q 037842 12 GEVRFTCGICLDTMKEESSTK-CGHVFCKSCIVDAIRLQ------GKCPT--CRTR-MSVRSIRRI 67 (78)
Q Consensus 12 ~~~~~~C~iC~~~~~~~~~~~-CgH~fc~~C~~~~~~~~------~~CP~--C~~~-~~~~~~~~~ 67 (78)
..+.+.||||++.|.+|+.++ |||+||+.||..|+... ..||. |+.. +...++.++
T Consensus 4 ~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn 69 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQD 69 (94)
T ss_dssp CSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEEC
T ss_pred CCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCC
Confidence 456789999999999999995 99999999999999753 48999 8866 766666654
No 51
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.53 E-value=5.9e-15 Score=80.74 Aligned_cols=49 Identities=29% Similarity=0.610 Sum_probs=40.6
Q ss_pred cccccccccccccCce------------------ecCCCChhhHHhHHHHhh-----CCCCccccccccccc
Q 037842 14 VRFTCGICLDTMKEES------------------STKCGHVFCKSCIVDAIR-----LQGKCPTCRTRMSVR 62 (78)
Q Consensus 14 ~~~~C~iC~~~~~~~~------------------~~~CgH~fc~~C~~~~~~-----~~~~CP~C~~~~~~~ 62 (78)
.+..|+||++.+.++. .++|||.||..||..|+. ....||+||..+...
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 4568999999987653 678999999999999994 456899999987643
No 52
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.52 E-value=5.6e-15 Score=90.64 Aligned_cols=57 Identities=16% Similarity=0.167 Sum_probs=49.6
Q ss_pred CCCcccccccccccccCceecCCCChhhHHhHHHHhhCCC-Ccccccccccccceeee
Q 037842 11 VGEVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQG-KCPTCRTRMSVRSIRRI 67 (78)
Q Consensus 11 ~~~~~~~C~iC~~~~~~~~~~~CgH~fc~~C~~~~~~~~~-~CP~C~~~~~~~~~~~~ 67 (78)
...+.+.|+||++.+.+|++++|||+||..|+.+|+.... .||.|+.++...++.++
T Consensus 204 ~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n 261 (281)
T 2c2l_A 204 DIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPN 261 (281)
T ss_dssp CCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEEC
T ss_pred CCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCccc
Confidence 4456799999999999999999999999999999998644 59999999987776654
No 53
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.51 E-value=1.7e-15 Score=73.88 Aligned_cols=47 Identities=21% Similarity=0.512 Sum_probs=40.8
Q ss_pred CCcccccccccccccCceecCCCChhhHHhHHHHhhCCCCcccccccccc
Q 037842 12 GEVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQGKCPTCRTRMSV 61 (78)
Q Consensus 12 ~~~~~~C~iC~~~~~~~~~~~CgH~fc~~C~~~~~~~~~~CP~C~~~~~~ 61 (78)
..+.+.|+||++.+.+|+.++|||+||..|+.. ....||.||..+..
T Consensus 3 e~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~---~~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 3 EFQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEA---SGMQCPICQAPWPL 49 (56)
T ss_dssp SCCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSS---SSSSCSSCCSSSSC
T ss_pred cccCCCceEeCCccCCeEEcCCCCcccHHHHcc---CCCCCCcCCcEeec
Confidence 356788999999999999999999999999876 35689999998764
No 54
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.49 E-value=1.5e-14 Score=72.02 Aligned_cols=55 Identities=18% Similarity=0.586 Sum_probs=46.4
Q ss_pred CCcccccccccccccCceec--CCCCh-hhHHhHHHHhhCCCCcccccccccccceeeec
Q 037842 12 GEVRFTCGICLDTMKEESST--KCGHV-FCKSCIVDAIRLQGKCPTCRTRMSVRSIRRIF 68 (78)
Q Consensus 12 ~~~~~~C~iC~~~~~~~~~~--~CgH~-fc~~C~~~~~~~~~~CP~C~~~~~~~~~~~~~ 68 (78)
.+....|+||++...+++.+ +|||. ||..|+..+......||+||.++. .+.++|
T Consensus 4 ~~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~--~~i~i~ 61 (63)
T 2vje_B 4 QNLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ--LVIKVF 61 (63)
T ss_dssp GGGGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC--EEEEEE
T ss_pred CCcCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh--ceEEEe
Confidence 34567899999999998777 99998 999999999888889999999875 455554
No 55
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.48 E-value=2.6e-14 Score=83.97 Aligned_cols=59 Identities=14% Similarity=0.110 Sum_probs=51.2
Q ss_pred cCCCcccccccccccccCceecCCCChhhHHhHHHHhhCC-CCcccccccccccceeeec
Q 037842 10 VVGEVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQ-GKCPTCRTRMSVRSIRRIF 68 (78)
Q Consensus 10 ~~~~~~~~C~iC~~~~~~~~~~~CgH~fc~~C~~~~~~~~-~~CP~C~~~~~~~~~~~~~ 68 (78)
....+.+.||||++.+.+|+.++|||+||..|+..|+... ..||.|+.++...++.++.
T Consensus 101 ~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~ 160 (179)
T 2f42_A 101 REIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNL 160 (179)
T ss_dssp CCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECH
T ss_pred cCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchH
Confidence 3456789999999999999999999999999999999864 3699999999887777653
No 56
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.46 E-value=1.3e-14 Score=74.25 Aligned_cols=45 Identities=33% Similarity=0.746 Sum_probs=40.4
Q ss_pred CcccccccccccccCceecCCCCh-hhHHhHHHHhhCCCCcccccccccc
Q 037842 13 EVRFTCGICLDTMKEESSTKCGHV-FCKSCIVDAIRLQGKCPTCRTRMSV 61 (78)
Q Consensus 13 ~~~~~C~iC~~~~~~~~~~~CgH~-fc~~C~~~~~~~~~~CP~C~~~~~~ 61 (78)
.++..|+||++.+.+++.++|||. ||..|+..| ..||+||..+..
T Consensus 22 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 22 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred ccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 456889999999999999999999 999999877 789999998763
No 57
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.44 E-value=7.4e-14 Score=75.98 Aligned_cols=48 Identities=23% Similarity=0.479 Sum_probs=41.2
Q ss_pred cccccccccccccCc------------------eecCCCChhhHHhHHHHhhCCCCcccccccccc
Q 037842 14 VRFTCGICLDTMKEE------------------SSTKCGHVFCKSCIVDAIRLQGKCPTCRTRMSV 61 (78)
Q Consensus 14 ~~~~C~iC~~~~~~~------------------~~~~CgH~fc~~C~~~~~~~~~~CP~C~~~~~~ 61 (78)
++..|+||++.+.++ +.++|+|.||..|+..|+..+..||+||+.+..
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~ 101 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF 101 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCCE
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCccee
Confidence 456799999998865 346899999999999999999999999998654
No 58
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.42 E-value=1.7e-13 Score=84.36 Aligned_cols=60 Identities=27% Similarity=0.516 Sum_probs=50.7
Q ss_pred cccCCCcccccccccccccCceec-CCCChhhHHhHHHHhhCC--CCccc--ccccccccceeee
Q 037842 8 AVVVGEVRFTCGICLDTMKEESST-KCGHVFCKSCIVDAIRLQ--GKCPT--CRTRMSVRSIRRI 67 (78)
Q Consensus 8 ~~~~~~~~~~C~iC~~~~~~~~~~-~CgH~fc~~C~~~~~~~~--~~CP~--C~~~~~~~~~~~~ 67 (78)
........+.||||++.|.+|+.. .|||+||+.||..|+... ..||+ |+..+...++...
T Consensus 174 ~v~~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN 238 (267)
T 3htk_C 174 QIEGGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRD 238 (267)
T ss_dssp CCCSSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEEC
T ss_pred eecCCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcC
Confidence 334456789999999999999985 999999999999999864 47999 9999988777654
No 59
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.41 E-value=1.2e-13 Score=89.03 Aligned_cols=51 Identities=27% Similarity=0.600 Sum_probs=45.5
Q ss_pred ccccccccccccCceecCCCChhhHHhHHHHhh-CCCCccccccccccccee
Q 037842 15 RFTCGICLDTMKEESSTKCGHVFCKSCIVDAIR-LQGKCPTCRTRMSVRSIR 65 (78)
Q Consensus 15 ~~~C~iC~~~~~~~~~~~CgH~fc~~C~~~~~~-~~~~CP~C~~~~~~~~~~ 65 (78)
...|+||++.+.+++.++|||.||..|+..|+. ....||.||..+....+.
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~i 383 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPI 383 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEEEC
T ss_pred CCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCceeE
Confidence 368999999999999999999999999999998 677999999998865443
No 60
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=9e-14 Score=71.22 Aligned_cols=45 Identities=33% Similarity=0.734 Sum_probs=39.1
Q ss_pred CcccccccccccccCceecCCCCh-hhHHhHHHHhhCCCCcccccccccc
Q 037842 13 EVRFTCGICLDTMKEESSTKCGHV-FCKSCIVDAIRLQGKCPTCRTRMSV 61 (78)
Q Consensus 13 ~~~~~C~iC~~~~~~~~~~~CgH~-fc~~C~~~~~~~~~~CP~C~~~~~~ 61 (78)
++...|+||++.+.+++.++|||. ||..|+.. ...||+||..+..
T Consensus 23 ~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 23 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEA----VDKCPMCYTVITF 68 (75)
T ss_dssp HHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred CCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhC----CCCCccCCceecC
Confidence 345789999999999999999999 99999964 3689999998864
No 61
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=99.36 E-value=2.6e-13 Score=67.16 Aligned_cols=56 Identities=20% Similarity=0.287 Sum_probs=51.0
Q ss_pred ccccccccccccCceec-CCCChhhHHhHHHHhhCCCCcccccccccccceeeeccC
Q 037842 15 RFTCGICLDTMKEESST-KCGHVFCKSCIVDAIRLQGKCPTCRTRMSVRSIRRIFFP 70 (78)
Q Consensus 15 ~~~C~iC~~~~~~~~~~-~CgH~fc~~C~~~~~~~~~~CP~C~~~~~~~~~~~~~~~ 70 (78)
.+.|+|+++.+.+|+.+ ++||+|++.++.+|+...+.||+.+.++..+++.++.+.
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~Lip~~~~ 59 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVEIVPS 59 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCEECCCC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhcEECccC
Confidence 47899999999999999 899999999999999887789999999999999887654
No 62
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=5.9e-13 Score=67.14 Aligned_cols=54 Identities=22% Similarity=0.476 Sum_probs=43.8
Q ss_pred CCCcccccccccccccCceecCCCCh-hhHHhHHHHhhCCCCcccccccccccceeeeccC
Q 037842 11 VGEVRFTCGICLDTMKEESSTKCGHV-FCKSCIVDAIRLQGKCPTCRTRMSVRSIRRIFFP 70 (78)
Q Consensus 11 ~~~~~~~C~iC~~~~~~~~~~~CgH~-fc~~C~~~~~~~~~~CP~C~~~~~~~~~~~~~~~ 70 (78)
...+...|.||++...+++.++|||. ||..|+.. ...||+||..+. ...+++.+
T Consensus 11 ~~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~--~~~~i~~~ 65 (68)
T 2ea5_A 11 SEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQ--ESFALSGP 65 (68)
T ss_dssp SCCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH----CSSCTTTCCCCC--CEECCCSS
T ss_pred cCCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc----CCCCCCCCcchh--ceEEeecC
Confidence 34457889999999999999999999 99999974 368999999876 35555543
No 63
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=99.33 E-value=3.9e-13 Score=69.60 Aligned_cols=53 Identities=26% Similarity=0.814 Sum_probs=44.0
Q ss_pred CcccccccccccccCceecCCCCh-hhHHhHHHHhhCCCCcccccccccccceeeeccCC
Q 037842 13 EVRFTCGICLDTMKEESSTKCGHV-FCKSCIVDAIRLQGKCPTCRTRMSVRSIRRIFFPQ 71 (78)
Q Consensus 13 ~~~~~C~iC~~~~~~~~~~~CgH~-fc~~C~~~~~~~~~~CP~C~~~~~~~~~~~~~~~~ 71 (78)
.+...|+||++.+.+++.++|||. ||..|+..+ ..||+||..+.. ..+++++.
T Consensus 16 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~--~~~i~~p~ 69 (79)
T 2yho_A 16 KEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQL----QSCPVCRSRVEH--VQHVYLPT 69 (79)
T ss_dssp HHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC----SBCTTTCCBCCE--EEECBCTT
T ss_pred CCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhc----CcCCCCCchhhC--eEEEEeCc
Confidence 456789999999999999999999 999999765 389999998774 45666554
No 64
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.26 E-value=5.8e-13 Score=73.55 Aligned_cols=48 Identities=21% Similarity=0.451 Sum_probs=0.4
Q ss_pred ccccccccccccCc-----------------e-ecCCCChhhHHhHHHHhhCCCCccccccccccc
Q 037842 15 RFTCGICLDTMKEE-----------------S-STKCGHVFCKSCIVDAIRLQGKCPTCRTRMSVR 62 (78)
Q Consensus 15 ~~~C~iC~~~~~~~-----------------~-~~~CgH~fc~~C~~~~~~~~~~CP~C~~~~~~~ 62 (78)
+..|+||++.+.++ + .++|+|.||..|+.+|+..+..||+||..+...
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~~ 113 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQ 113 (117)
T ss_dssp C-----------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeeeee
Confidence 46899999998763 1 248999999999999999988999999986543
No 65
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.23 E-value=1.3e-12 Score=69.36 Aligned_cols=55 Identities=25% Similarity=0.642 Sum_probs=43.0
Q ss_pred CcccccccccccccCceec---CCCChhhHHhHHHHhhC--------CCCccc--cccc--ccccceeee
Q 037842 13 EVRFTCGICLDTMKEESST---KCGHVFCKSCIVDAIRL--------QGKCPT--CRTR--MSVRSIRRI 67 (78)
Q Consensus 13 ~~~~~C~iC~~~~~~~~~~---~CgH~fc~~C~~~~~~~--------~~~CP~--C~~~--~~~~~~~~~ 67 (78)
.+.+.|+||++.+..+..+ +|||.||..||..++.. ...||. |+.. +....+..+
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i~~l 72 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEIECM 72 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHHHHH
T ss_pred CCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHHHHH
Confidence 4567899999999877543 69999999999999863 137999 9998 766555443
No 66
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=7e-12 Score=65.04 Aligned_cols=51 Identities=20% Similarity=0.409 Sum_probs=41.4
Q ss_pred CCccccccccccccc--CceecCCC-----ChhhHHhHHHHhhCC--CCccccccccccc
Q 037842 12 GEVRFTCGICLDTMK--EESSTKCG-----HVFCKSCIVDAIRLQ--GKCPTCRTRMSVR 62 (78)
Q Consensus 12 ~~~~~~C~iC~~~~~--~~~~~~Cg-----H~fc~~C~~~~~~~~--~~CP~C~~~~~~~ 62 (78)
..+...|.||++.+. +++.++|+ |.||..||.+|+..+ ..||+||..+..+
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 345578999998774 46777896 999999999999864 4899999988654
No 67
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=99.11 E-value=8.7e-12 Score=79.45 Aligned_cols=44 Identities=32% Similarity=0.758 Sum_probs=39.8
Q ss_pred cccccccccccccCceecCCCCh-hhHHhHHHHhhCCCCcccccccccc
Q 037842 14 VRFTCGICLDTMKEESSTKCGHV-FCKSCIVDAIRLQGKCPTCRTRMSV 61 (78)
Q Consensus 14 ~~~~C~iC~~~~~~~~~~~CgH~-fc~~C~~~~~~~~~~CP~C~~~~~~ 61 (78)
++..|+||++.+.+++.++|||. ||..|+..| ..||+||..+..
T Consensus 294 ~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred CCCCCCccCCcCCceEEcCCCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 56889999999999999999999 999999876 689999998763
No 68
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.06 E-value=3.7e-10 Score=57.73 Aligned_cols=49 Identities=20% Similarity=0.541 Sum_probs=40.7
Q ss_pred CCcccccccccccccCceec-CCCChhhHHhHHHHhhCC--CCccccccccc
Q 037842 12 GEVRFTCGICLDTMKEESST-KCGHVFCKSCIVDAIRLQ--GKCPTCRTRMS 60 (78)
Q Consensus 12 ~~~~~~C~iC~~~~~~~~~~-~CgH~fc~~C~~~~~~~~--~~CP~C~~~~~ 60 (78)
.+....|+||.+.+...... .|+|.|+..|+.+|++.. ..||+|+....
T Consensus 12 ~~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 12 PDAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SSSSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred cCCCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 33457899999999865544 799999999999999876 78999997655
No 69
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.71 E-value=1.3e-08 Score=49.99 Aligned_cols=49 Identities=22% Similarity=0.494 Sum_probs=39.0
Q ss_pred CcccccccccccccCceecCCC--C---hhhHHhHHHHhhC--CCCcccccccccc
Q 037842 13 EVRFTCGICLDTMKEESSTKCG--H---VFCKSCIVDAIRL--QGKCPTCRTRMSV 61 (78)
Q Consensus 13 ~~~~~C~iC~~~~~~~~~~~Cg--H---~fc~~C~~~~~~~--~~~CP~C~~~~~~ 61 (78)
++...|.||++...++..+||. + .|+..|+.+|+.. +..||+|+..+..
T Consensus 4 ~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 4567899999987777667754 4 7999999999974 5689999988753
No 70
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.62 E-value=3.2e-08 Score=52.86 Aligned_cols=45 Identities=27% Similarity=0.586 Sum_probs=37.4
Q ss_pred ccccccccccCc-eecCCCChhhHHhHHHHhhC-CCCcccccccccc
Q 037842 17 TCGICLDTMKEE-SSTKCGHVFCKSCIVDAIRL-QGKCPTCRTRMSV 61 (78)
Q Consensus 17 ~C~iC~~~~~~~-~~~~CgH~fc~~C~~~~~~~-~~~CP~C~~~~~~ 61 (78)
.|++|.-.+... .+++|+|+||++|+..|.++ .+.||.|+.++..
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 588888877765 56799999999999998754 6789999998863
No 71
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.61 E-value=6.3e-09 Score=66.40 Aligned_cols=49 Identities=22% Similarity=0.615 Sum_probs=38.6
Q ss_pred CCcccccccccccccC----ce----ecCCCChhhHHhHHHHhhCC-----------CCccccccccc
Q 037842 12 GEVRFTCGICLDTMKE----ES----STKCGHVFCKSCIVDAIRLQ-----------GKCPTCRTRMS 60 (78)
Q Consensus 12 ~~~~~~C~iC~~~~~~----~~----~~~CgH~fc~~C~~~~~~~~-----------~~CP~C~~~~~ 60 (78)
.+....|+||++.+.+ |. ...|||.|+..|+.+|+... +.||.|+.++.
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred ccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 3456789999998776 21 13799999999999999741 46999999876
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.87 E-value=1.5e-05 Score=48.53 Aligned_cols=48 Identities=21% Similarity=0.553 Sum_probs=39.4
Q ss_pred cccccccccccccCceecC-CCChhhHHhHHHHhhCCC--Ccccccccccc
Q 037842 14 VRFTCGICLDTMKEESSTK-CGHVFCKSCIVDAIRLQG--KCPTCRTRMSV 61 (78)
Q Consensus 14 ~~~~C~iC~~~~~~~~~~~-CgH~fc~~C~~~~~~~~~--~CP~C~~~~~~ 61 (78)
....|.+|.+.+......+ |+|.|+..|+..|++... .||.|+.....
T Consensus 179 ~i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp TCCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 3568999999988776654 999999999999997644 89999886543
No 73
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=97.58 E-value=3.5e-05 Score=40.77 Aligned_cols=32 Identities=16% Similarity=0.626 Sum_probs=26.8
Q ss_pred ccccccccccc-ccCcee--cCCCChhhHHhHHHH
Q 037842 14 VRFTCGICLDT-MKEESS--TKCGHVFCKSCIVDA 45 (78)
Q Consensus 14 ~~~~C~iC~~~-~~~~~~--~~CgH~fc~~C~~~~ 45 (78)
+++.|+||.+. +.+++. +.|+|.||..|+..+
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 35789999975 667777 899999999999983
No 74
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=97.42 E-value=0.00017 Score=51.19 Aligned_cols=57 Identities=12% Similarity=0.044 Sum_probs=51.0
Q ss_pred CCCcccccccccccccCceecCCC-ChhhHHhHHHHhhCCCCcccccccccccceeee
Q 037842 11 VGEVRFTCGICLDTMKEESSTKCG-HVFCKSCIVDAIRLQGKCPTCRTRMSVRSIRRI 67 (78)
Q Consensus 11 ~~~~~~~C~iC~~~~~~~~~~~Cg-H~fc~~C~~~~~~~~~~CP~C~~~~~~~~~~~~ 67 (78)
...+++.|||-.+.+.+||.++-| ++|=+..+.+|+.....||.-|.++...++.++
T Consensus 887 ~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~liPN 944 (968)
T 3m62_A 887 DVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTPN 944 (968)
T ss_dssp CSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEEC
T ss_pred CCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCccccccc
Confidence 455789999999999999999998 689999999999988899999999988777765
No 75
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=96.11 E-value=0.01 Score=30.49 Aligned_cols=38 Identities=21% Similarity=0.560 Sum_probs=30.4
Q ss_pred CCCcccccccccccccCceecC----CCChhhHHhHHHHhhC
Q 037842 11 VGEVRFTCGICLDTMKEESSTK----CGHVFCKSCIVDAIRL 48 (78)
Q Consensus 11 ~~~~~~~C~iC~~~~~~~~~~~----CgH~fc~~C~~~~~~~ 48 (78)
.....+.|.+|.+.+++...+. =+|.||..|-..+++.
T Consensus 11 ~~~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 11 ANSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CSCCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CCCCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 3456689999999999985443 3799999999988874
No 76
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=95.89 E-value=0.013 Score=30.83 Aligned_cols=47 Identities=21% Similarity=0.634 Sum_probs=36.5
Q ss_pred cccccccccccccCceecCC-CChhhHHhHHHHhhCCCCccccccccccc
Q 037842 14 VRFTCGICLDTMKEESSTKC-GHVFCKSCIVDAIRLQGKCPTCRTRMSVR 62 (78)
Q Consensus 14 ~~~~C~iC~~~~~~~~~~~C-gH~fc~~C~~~~~~~~~~CP~C~~~~~~~ 62 (78)
..+.|-.|.-... -.+.| .|.+|..|+...+.....||+|+.++..+
T Consensus 27 G~~nCKsCWf~~k--~LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 27 GPQFCKSCWFENK--GLVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTK 74 (99)
T ss_dssp CCCCCCSSCSCCS--SEEECSSCEEEHHHHHHTCSSSSEETTTTEECCCC
T ss_pred CcccChhhccccC--CeeeecchhhHHHHHHHHHhhccCCcccCCcCCcc
Confidence 4467777776554 35565 58899999999888888999999998743
No 77
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=93.93 E-value=0.046 Score=35.33 Aligned_cols=53 Identities=21% Similarity=0.493 Sum_probs=36.9
Q ss_pred CcccccccccccccCcee-cCCCChhhH--HhHHHHhhC--CCCccccccccccccee
Q 037842 13 EVRFTCGICLDTMKEESS-TKCGHVFCK--SCIVDAIRL--QGKCPTCRTRMSVRSIR 65 (78)
Q Consensus 13 ~~~~~C~iC~~~~~~~~~-~~CgH~fc~--~C~~~~~~~--~~~CP~C~~~~~~~~~~ 65 (78)
.-.+.||+-...+..|+. ..|.|.-|. .-+.....+ .-.||+|.+.+...++.
T Consensus 247 ~vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ 304 (371)
T 3i2d_A 247 IMSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLA 304 (371)
T ss_dssp EEESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEE
T ss_pred EEeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHee
Confidence 345889999999999976 479998443 333333322 33799999988766654
No 78
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=93.72 E-value=0.06 Score=34.64 Aligned_cols=53 Identities=17% Similarity=0.394 Sum_probs=37.0
Q ss_pred CcccccccccccccCcee-cCCCChhh--HHhHHHHhhC--CCCccccccccccccee
Q 037842 13 EVRFTCGICLDTMKEESS-TKCGHVFC--KSCIVDAIRL--QGKCPTCRTRMSVRSIR 65 (78)
Q Consensus 13 ~~~~~C~iC~~~~~~~~~-~~CgH~fc--~~C~~~~~~~--~~~CP~C~~~~~~~~~~ 65 (78)
.-.+.||+-...+..|+. ..|.|.-| ..-+.....+ .-.||+|.+.+..+++.
T Consensus 213 ~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ 270 (360)
T 4fo9_A 213 RVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLI 270 (360)
T ss_dssp EEESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEE
T ss_pred EEeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeE
Confidence 345789999999999976 47999844 3333333332 33799999998766654
No 79
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=92.12 E-value=0.082 Score=28.52 Aligned_cols=49 Identities=18% Similarity=0.341 Sum_probs=37.6
Q ss_pred cccccccccccC---ceecCCCChhhHHhHHHHhhCCCCcccccccccccce
Q 037842 16 FTCGICLDTMKE---ESSTKCGHVFCKSCIVDAIRLQGKCPTCRTRMSVRSI 64 (78)
Q Consensus 16 ~~C~iC~~~~~~---~~~~~CgH~fc~~C~~~~~~~~~~CP~C~~~~~~~~~ 64 (78)
+.|..|...+.+ .....=|..||..|..+.+..+..|-.|..++....+
T Consensus 33 F~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~~~ 84 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSGGDV 84 (122)
T ss_dssp HCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCCEES
T ss_pred CCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCchhe
Confidence 788899888863 3444567789999998877766689999988876544
No 80
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=90.70 E-value=0.23 Score=24.22 Aligned_cols=44 Identities=23% Similarity=0.517 Sum_probs=30.2
Q ss_pred CcccccccccccccCceec--CCCChhhHHhHHHHhhCCC----Cccccccc
Q 037842 13 EVRFTCGICLDTMKEESST--KCGHVFCKSCIVDAIRLQG----KCPTCRTR 58 (78)
Q Consensus 13 ~~~~~C~iC~~~~~~~~~~--~CgH~fc~~C~~~~~~~~~----~CP~C~~~ 58 (78)
.....|.||.+.- .+++ .|...|+..|+...+.... .|+.|...
T Consensus 10 ~~~~~C~vC~~~~--~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 10 APGARCGVCGDGT--DVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp CTTCCCTTTSCCT--TCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCCcCCCCCCC--eEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 3456799998642 2222 6999999999976665432 69999654
No 81
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=90.48 E-value=0.039 Score=23.67 Aligned_cols=16 Identities=19% Similarity=0.623 Sum_probs=11.9
Q ss_pred CcccccccccccccCc
Q 037842 13 EVRFTCGICLDTMKEE 28 (78)
Q Consensus 13 ~~~~~C~iC~~~~~~~ 28 (78)
.+.+.||+|+..+.++
T Consensus 3 ~EGFiCP~C~~~l~s~ 18 (34)
T 3mjh_B 3 SEGFICPQCMKSLGSA 18 (34)
T ss_dssp SEEEECTTTCCEESSH
T ss_pred CcccCCcHHHHHcCCH
Confidence 3458888888887765
No 82
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=88.53 E-value=0.48 Score=22.56 Aligned_cols=46 Identities=17% Similarity=0.458 Sum_probs=30.7
Q ss_pred cCCCcccccccccccccCceec--CCCChhhHHhHHHHhhCC----CCcccccc
Q 037842 10 VVGEVRFTCGICLDTMKEESST--KCGHVFCKSCIVDAIRLQ----GKCPTCRT 57 (78)
Q Consensus 10 ~~~~~~~~C~iC~~~~~~~~~~--~CgH~fc~~C~~~~~~~~----~~CP~C~~ 57 (78)
.....+..|.+|.+. ..+++ .|...|+..|+..-+... -.||.|..
T Consensus 6 ~~~~~~~~C~vC~~~--g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 6 YETDHQDYCEVCQQG--GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CSSCCCSSCTTTSCC--SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred ccCCCCCCCccCCCC--CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 345556789999874 22222 688899999998654332 25999964
No 83
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=87.97 E-value=0.2 Score=24.76 Aligned_cols=29 Identities=28% Similarity=0.572 Sum_probs=21.5
Q ss_pred ccccccccccccCc---ee-cCCCChhhHHhHH
Q 037842 15 RFTCGICLDTMKEE---SS-TKCGHVFCKSCIV 43 (78)
Q Consensus 15 ~~~C~iC~~~~~~~---~~-~~CgH~fc~~C~~ 43 (78)
+..|.+|...|.-- .. -.||.+||..|..
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 45899999987642 12 3799999999864
No 84
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=87.62 E-value=0.19 Score=24.83 Aligned_cols=49 Identities=18% Similarity=0.419 Sum_probs=32.4
Q ss_pred CCcccccccccccccCceec---CCCChhhHHhHHHHhhC----CCCccccccccc
Q 037842 12 GEVRFTCGICLDTMKEESST---KCGHVFCKSCIVDAIRL----QGKCPTCRTRMS 60 (78)
Q Consensus 12 ~~~~~~C~iC~~~~~~~~~~---~CgH~fc~~C~~~~~~~----~~~CP~C~~~~~ 60 (78)
..+...|.+|........++ .|..-|+..|+...... .-.||.|...+.
T Consensus 15 ~~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 15 GNQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp SCEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 34556799998876543333 57778999998643332 236999977654
No 85
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=87.08 E-value=0.55 Score=25.25 Aligned_cols=49 Identities=20% Similarity=0.474 Sum_probs=35.9
Q ss_pred cccccccccccccC---ceecCCCChhhHHhHHHHhhCCCCccccccccccc
Q 037842 14 VRFTCGICLDTMKE---ESSTKCGHVFCKSCIVDAIRLQGKCPTCRTRMSVR 62 (78)
Q Consensus 14 ~~~~C~iC~~~~~~---~~~~~CgH~fc~~C~~~~~~~~~~CP~C~~~~~~~ 62 (78)
+-+.|..|...+.. .....=|..||..|..+.+.....|..|...+...
T Consensus 28 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~~ 79 (131)
T 2xjy_A 28 DCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAY 79 (131)
T ss_dssp TTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEECTT
T ss_pred HHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccCcc
Confidence 34788889888853 34455677899999987765544799998888653
No 86
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=86.84 E-value=0.3 Score=25.14 Aligned_cols=54 Identities=15% Similarity=0.282 Sum_probs=33.5
Q ss_pred cCCCcccccccccccc--cCceec---CCCChhhHHhHHHHhhCC--CCcccccccccccc
Q 037842 10 VVGEVRFTCGICLDTM--KEESST---KCGHVFCKSCIVDAIRLQ--GKCPTCRTRMSVRS 63 (78)
Q Consensus 10 ~~~~~~~~C~iC~~~~--~~~~~~---~CgH~fc~~C~~~~~~~~--~~CP~C~~~~~~~~ 63 (78)
...+++..|.||...- ....++ .|.-.|+..|+..-.... -.||.|........
T Consensus 20 ~~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~~~ 80 (88)
T 2l43_A 20 SLIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRARPA 80 (88)
T ss_dssp CCCCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTSCC
T ss_pred CcCCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccchhh
Confidence 3445678999999764 111222 688889999986433222 25999976554433
No 87
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=86.15 E-value=2.4 Score=22.05 Aligned_cols=48 Identities=29% Similarity=0.590 Sum_probs=34.2
Q ss_pred cccccccccccccCc----eec---CCCChhhHHhHHHHhhC-CCCcccccccccc
Q 037842 14 VRFTCGICLDTMKEE----SST---KCGHVFCKSCIVDAIRL-QGKCPTCRTRMSV 61 (78)
Q Consensus 14 ~~~~C~iC~~~~~~~----~~~---~CgH~fc~~C~~~~~~~-~~~CP~C~~~~~~ 61 (78)
....|.||-+.+-.. +.. .|+--.|+.|+.--.+. ...||.|+..+..
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcccc
Confidence 456899999975522 222 57878899999755443 4579999988763
No 88
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=86.05 E-value=0.44 Score=24.52 Aligned_cols=32 Identities=25% Similarity=0.513 Sum_probs=23.0
Q ss_pred cccccccccccccCc---ee-cCCCChhhHHhHHHH
Q 037842 14 VRFTCGICLDTMKEE---SS-TKCGHVFCKSCIVDA 45 (78)
Q Consensus 14 ~~~~C~iC~~~~~~~---~~-~~CgH~fc~~C~~~~ 45 (78)
+...|.+|...|.-- .. -.||.+||..|....
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 346799999887632 12 379999999997543
No 89
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=85.48 E-value=0.37 Score=27.82 Aligned_cols=49 Identities=20% Similarity=0.548 Sum_probs=35.4
Q ss_pred cccccccccccccC---ceecCCCChhhHHhHHHHhhCCCCccccccccccc
Q 037842 14 VRFTCGICLDTMKE---ESSTKCGHVFCKSCIVDAIRLQGKCPTCRTRMSVR 62 (78)
Q Consensus 14 ~~~~C~iC~~~~~~---~~~~~CgH~fc~~C~~~~~~~~~~CP~C~~~~~~~ 62 (78)
+-+.|..|...+.. .....=|..||..|..+.+..+..|..|...+...
T Consensus 31 ~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~~~ 82 (188)
T 1rut_X 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIPAS 82 (188)
T ss_dssp GGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEECTT
T ss_pred cCcccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCccccC
Confidence 34788888888764 34445678899999887665444799998888643
No 90
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=85.15 E-value=0.29 Score=24.72 Aligned_cols=31 Identities=26% Similarity=0.763 Sum_probs=22.5
Q ss_pred cccccccccccccCce---e-cCCCChhhHHhHHH
Q 037842 14 VRFTCGICLDTMKEES---S-TKCGHVFCKSCIVD 44 (78)
Q Consensus 14 ~~~~C~iC~~~~~~~~---~-~~CgH~fc~~C~~~ 44 (78)
+...|.+|...|.--. . -.||.+||..|...
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 3457999999876331 2 37999999999754
No 91
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=84.99 E-value=0.31 Score=24.74 Aligned_cols=31 Identities=23% Similarity=0.502 Sum_probs=22.9
Q ss_pred cccccccccccccCc---ee-cCCCChhhHHhHHH
Q 037842 14 VRFTCGICLDTMKEE---SS-TKCGHVFCKSCIVD 44 (78)
Q Consensus 14 ~~~~C~iC~~~~~~~---~~-~~CgH~fc~~C~~~ 44 (78)
+...|.+|...|.-- .. -.||.+||..|...
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 456899999987642 12 37999999999654
No 92
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=84.62 E-value=0.29 Score=26.78 Aligned_cols=30 Identities=23% Similarity=0.680 Sum_probs=21.9
Q ss_pred ccccccccccccCc---ee-cCCCChhhHHhHHH
Q 037842 15 RFTCGICLDTMKEE---SS-TKCGHVFCKSCIVD 44 (78)
Q Consensus 15 ~~~C~iC~~~~~~~---~~-~~CgH~fc~~C~~~ 44 (78)
...|.+|...|.-- .. -.||++||..|...
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 45799999987632 12 37999999998643
No 93
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.34 E-value=0.31 Score=24.70 Aligned_cols=32 Identities=28% Similarity=0.569 Sum_probs=22.7
Q ss_pred CCcccccccccccccCc---ee-cCCCChhhHHhHH
Q 037842 12 GEVRFTCGICLDTMKEE---SS-TKCGHVFCKSCIV 43 (78)
Q Consensus 12 ~~~~~~C~iC~~~~~~~---~~-~~CgH~fc~~C~~ 43 (78)
+.+...|.+|...|..- .. -.||.+||..|..
T Consensus 11 d~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 11 TNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp CCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred CCCCCcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 33446799999987532 12 3799999999864
No 94
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=82.50 E-value=0.12 Score=26.93 Aligned_cols=54 Identities=13% Similarity=0.377 Sum_probs=33.4
Q ss_pred CCCcccCCCcccccccccccccCceec---CCCChhhHHhHHHHhhCCC----Cccccccc
Q 037842 5 RNGAVVVGEVRFTCGICLDTMKEESST---KCGHVFCKSCIVDAIRLQG----KCPTCRTR 58 (78)
Q Consensus 5 ~~~~~~~~~~~~~C~iC~~~~~~~~~~---~CgH~fc~~C~~~~~~~~~----~CP~C~~~ 58 (78)
+........+...|.||...-....++ .|...|+..|+..-+.... .||.|...
T Consensus 6 ~~~s~~~~~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 6 SGHSSAQFIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCCCCCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred CCCchhhccCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 344445555667899999865422222 5887888888864443321 59998654
No 95
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=82.38 E-value=0.066 Score=29.32 Aligned_cols=45 Identities=18% Similarity=0.461 Sum_probs=26.9
Q ss_pred CCcccccccccccccCc---ee-cCCCChhhHHhHHHHhhCCCCccccc
Q 037842 12 GEVRFTCGICLDTMKEE---SS-TKCGHVFCKSCIVDAIRLQGKCPTCR 56 (78)
Q Consensus 12 ~~~~~~C~iC~~~~~~~---~~-~~CgH~fc~~C~~~~~~~~~~CP~C~ 56 (78)
..+...|..|...|..- .. -.||.+||..|........+.|-.|-
T Consensus 16 d~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~ 64 (120)
T 1y02_A 16 TGLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQ 64 (120)
T ss_dssp ----CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHH
T ss_pred ccccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHH
Confidence 44456899999987642 12 37999999999765444455666663
No 96
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=82.05 E-value=0.52 Score=24.21 Aligned_cols=49 Identities=22% Similarity=0.522 Sum_probs=30.4
Q ss_pred CCcccccccccccccCce---e-cCCCChhhHHhHHHHhh-------CCCCccccccccc
Q 037842 12 GEVRFTCGICLDTMKEES---S-TKCGHVFCKSCIVDAIR-------LQGKCPTCRTRMS 60 (78)
Q Consensus 12 ~~~~~~C~iC~~~~~~~~---~-~~CgH~fc~~C~~~~~~-------~~~~CP~C~~~~~ 60 (78)
..+...|.+|...|.--. . -.||.+||..|...... ..+.|-.|-..+.
T Consensus 6 ~~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l~ 65 (88)
T 1wfk_A 6 SGMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILT 65 (88)
T ss_dssp CCCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHH
T ss_pred CCcCCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHHH
Confidence 334557999999876431 2 37999999999754221 1234666655443
No 97
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=81.55 E-value=0.55 Score=21.33 Aligned_cols=41 Identities=22% Similarity=0.645 Sum_probs=25.4
Q ss_pred ccccccccccCceec---CCCChhhHHhHHHHhhCC----CCcccccc
Q 037842 17 TCGICLDTMKEESST---KCGHVFCKSCIVDAIRLQ----GKCPTCRT 57 (78)
Q Consensus 17 ~C~iC~~~~~~~~~~---~CgH~fc~~C~~~~~~~~----~~CP~C~~ 57 (78)
.|.+|...-....++ .|...|+..|+..-+... -.||.|..
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 477887654322222 688889999996544432 15888854
No 98
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=79.77 E-value=1.4 Score=21.07 Aligned_cols=39 Identities=31% Similarity=0.683 Sum_probs=26.3
Q ss_pred ccccccccccCcee---cCCCChhhHHhHHHHhhCCCCcccc
Q 037842 17 TCGICLDTMKEESS---TKCGHVFCKSCIVDAIRLQGKCPTC 55 (78)
Q Consensus 17 ~C~iC~~~~~~~~~---~~CgH~fc~~C~~~~~~~~~~CP~C 55 (78)
.|--|...+.+... ..|++.||.+|=.=.-..-.+||-|
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred cccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 58888888865432 3699999999953222233478877
No 99
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=78.93 E-value=2.3 Score=21.91 Aligned_cols=36 Identities=22% Similarity=0.285 Sum_probs=25.6
Q ss_pred ccCCCcccccccccccccCceec---CCCChhhHHhHHHH
Q 037842 9 VVVGEVRFTCGICLDTMKEESST---KCGHVFCKSCIVDA 45 (78)
Q Consensus 9 ~~~~~~~~~C~iC~~~~~~~~~~---~CgH~fc~~C~~~~ 45 (78)
.++...+..|.||...- ....+ -|+-+|+..|+.+.
T Consensus 9 ~e~~~~D~~C~VC~~~t-~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 9 REPVVNDEMCDVCEVWT-AESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCCCCSCCCTTTCCCC-SSCCSSCSSSSSCCCHHHHHHH
T ss_pred ccCCCCCcccCcccccc-ccceeccccccccccHhhcccc
Confidence 34455678999987543 33344 48899999999986
No 100
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=78.56 E-value=0.097 Score=25.14 Aligned_cols=32 Identities=22% Similarity=0.478 Sum_probs=22.1
Q ss_pred cccccccccccCc-----eecC---CCChhhHHhHHHHhh
Q 037842 16 FTCGICLDTMKEE-----SSTK---CGHVFCKSCIVDAIR 47 (78)
Q Consensus 16 ~~C~iC~~~~~~~-----~~~~---CgH~fc~~C~~~~~~ 47 (78)
..||-|...++.. ++.. |++.||..|...|..
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~ 46 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEP 46 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCccc
Confidence 5688888877643 2223 888888888777654
No 101
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=78.55 E-value=0.95 Score=27.05 Aligned_cols=32 Identities=22% Similarity=0.515 Sum_probs=23.1
Q ss_pred CcccccccccccccCc---ee-cCCCChhhHHhHHH
Q 037842 13 EVRFTCGICLDTMKEE---SS-TKCGHVFCKSCIVD 44 (78)
Q Consensus 13 ~~~~~C~iC~~~~~~~---~~-~~CgH~fc~~C~~~ 44 (78)
.+...|.+|...|.-- .. -.||.+||..|...
T Consensus 162 ~~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 162 VDAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp CCCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred ccCCCCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 3456899999877632 22 37999999998653
No 102
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=78.28 E-value=1.3 Score=21.71 Aligned_cols=40 Identities=15% Similarity=0.249 Sum_probs=26.6
Q ss_pred CcccccccccccccCceecCCCChhhHHhHHHHhhCCCCccccccccc
Q 037842 13 EVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQGKCPTCRTRMS 60 (78)
Q Consensus 13 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~C~~~~~~~~~~CP~C~~~~~ 60 (78)
.....|+-|.+.+...++..-+..|+..|+ .|-.|+..+.
T Consensus 13 ~~~~~C~~C~~~I~~~~~~a~~~~~H~~CF--------~C~~C~~~L~ 52 (79)
T 1x62_A 13 QKLPMCDKCGTGIVGVFVKLRDRHRHPECY--------VCTDCGTNLK 52 (79)
T ss_dssp CCCCCCSSSCCCCCSSCEECSSCEECTTTT--------SCSSSCCCHH
T ss_pred CCCCccccCCCCccCcEEEECcceeCcCcC--------eeCCCCCCCC
Confidence 345679999988776655555666666664 4667766664
No 103
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=77.78 E-value=0.94 Score=24.01 Aligned_cols=12 Identities=33% Similarity=0.977 Sum_probs=10.7
Q ss_pred hhHHhHHHHhhC
Q 037842 37 FCKSCIVDAIRL 48 (78)
Q Consensus 37 fc~~C~~~~~~~ 48 (78)
||+.|+..|+..
T Consensus 43 FCRNCLskWy~~ 54 (105)
T 2o35_A 43 FCRNCLSNWYRE 54 (105)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999873
No 104
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=77.69 E-value=0.3 Score=23.28 Aligned_cols=46 Identities=20% Similarity=0.390 Sum_probs=28.9
Q ss_pred CCCcccccccccccccCceec--CCCChhhHHhHHHHhhCC----CCccccccc
Q 037842 11 VGEVRFTCGICLDTMKEESST--KCGHVFCKSCIVDAIRLQ----GKCPTCRTR 58 (78)
Q Consensus 11 ~~~~~~~C~iC~~~~~~~~~~--~CgH~fc~~C~~~~~~~~----~~CP~C~~~ 58 (78)
....+..|.+|.+.- .+++ .|...|+..|+..-+... -.||.|...
T Consensus 5 ~d~~~~~C~vC~~~g--~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 5 SDHHMEFCRVCKDGG--ELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SCSSCSSCTTTCCCS--SCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred ccCCCCcCCCCCCCC--CEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 345567799998631 2222 588888888887544332 258988654
No 105
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=77.60 E-value=4.3 Score=22.77 Aligned_cols=47 Identities=19% Similarity=0.466 Sum_probs=33.3
Q ss_pred cccccccccccccCceecCCCChhhHHhHHHHhhCCCCccccccccccc
Q 037842 14 VRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQGKCPTCRTRMSVR 62 (78)
Q Consensus 14 ~~~~C~iC~~~~~~~~~~~CgH~fc~~C~~~~~~~~~~CP~C~~~~~~~ 62 (78)
+-+.|..|...+.......=|..||..|..+.+. ..|..|...+...
T Consensus 32 ~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f~--~~C~~C~~~I~~~ 78 (169)
T 2rgt_A 32 KCLKCSDCHVPLAERCFSRGESVYCKDDFFKRFG--TKCAACQLGIPPT 78 (169)
T ss_dssp TTSBCTTTCCBCCSCCEESSSCEECHHHHHHHHS--CBCTTTCCBCCTT
T ss_pred ccCccCCCCCcCCCCCcccCCeeeeccccccccc--ccccccccccCCC
Confidence 3478888988887654445678899999876543 4677887777643
No 106
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=77.56 E-value=0.68 Score=27.46 Aligned_cols=31 Identities=26% Similarity=0.604 Sum_probs=22.6
Q ss_pred CcccccccccccccCc---ee-cCCCChhhHHhHH
Q 037842 13 EVRFTCGICLDTMKEE---SS-TKCGHVFCKSCIV 43 (78)
Q Consensus 13 ~~~~~C~iC~~~~~~~---~~-~~CgH~fc~~C~~ 43 (78)
.+...|.+|...|.-- .. -.||++||..|..
T Consensus 159 ~~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~ 193 (220)
T 1dvp_A 159 ADGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTA 193 (220)
T ss_dssp CCCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSC
T ss_pred CCCCccCCCCCccCCcccccccCCcCCEEChHHhC
Confidence 3457899999887632 22 3699999998864
No 107
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=77.43 E-value=0.98 Score=23.91 Aligned_cols=11 Identities=27% Similarity=1.044 Sum_probs=10.4
Q ss_pred hhHHhHHHHhh
Q 037842 37 FCKSCIVDAIR 47 (78)
Q Consensus 37 fc~~C~~~~~~ 47 (78)
||+.|+..|+.
T Consensus 42 FCRNCLskWy~ 52 (104)
T 3fyb_A 42 FCRNCLAKWLM 52 (104)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999987
No 108
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=77.27 E-value=2.7 Score=23.53 Aligned_cols=46 Identities=24% Similarity=0.519 Sum_probs=29.8
Q ss_pred CCcccccccccccccCceecCCCChhhHHhHHHHhh---------C--CCCcccccc
Q 037842 12 GEVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIR---------L--QGKCPTCRT 57 (78)
Q Consensus 12 ~~~~~~C~iC~~~~~~~~~~~CgH~fc~~C~~~~~~---------~--~~~CP~C~~ 57 (78)
...+..|.+|.+-=.--.--.|-..||..|+.+-+. . .=.||.|+.
T Consensus 60 Dg~~d~C~vC~~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 60 DGMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp TSCBCSCSSSCCCSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCeecccCCCCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 444567888887432111126889999999997653 1 226999974
No 109
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=75.20 E-value=1.1 Score=23.13 Aligned_cols=48 Identities=17% Similarity=0.441 Sum_probs=31.7
Q ss_pred ccCCCcccccccccccccCceec--CCCChhhHHhHHHHhhCCC----Cccccccc
Q 037842 9 VVVGEVRFTCGICLDTMKEESST--KCGHVFCKSCIVDAIRLQG----KCPTCRTR 58 (78)
Q Consensus 9 ~~~~~~~~~C~iC~~~~~~~~~~--~CgH~fc~~C~~~~~~~~~----~CP~C~~~ 58 (78)
......+..|.+|...- ..++ .|.-.|+..|+..-+.... .||.|...
T Consensus 19 ~~~d~n~~~C~vC~~~g--~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 19 GTLDDSATICRVCQKPG--DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp CSSSSSSSCCSSSCSSS--CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred cccCCCCCcCcCcCCCC--CEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 34455667899999752 2222 6888899999866554322 59999754
No 110
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=74.61 E-value=2.8 Score=20.51 Aligned_cols=40 Identities=13% Similarity=0.458 Sum_probs=25.8
Q ss_pred ccccccccccccCceecCCCChhhHHhHHHHhhCCCCccccccccccc
Q 037842 15 RFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQGKCPTCRTRMSVR 62 (78)
Q Consensus 15 ~~~C~iC~~~~~~~~~~~CgH~fc~~C~~~~~~~~~~CP~C~~~~~~~ 62 (78)
...|+-|.+.+....+..-+..|+..|+ .|-.|+.++...
T Consensus 15 ~~~C~~C~~~I~~~~v~a~~~~~H~~CF--------~C~~C~~~L~~~ 54 (79)
T 2cor_A 15 KYICQKCHAIIDEQPLIFKNDPYHPDHF--------NCANCGKELTAD 54 (79)
T ss_dssp CCBCTTTCCBCCSCCCCCSSSCCCTTTS--------BCSSSCCBCCTT
T ss_pred CCCCccCCCEecceEEEECcceeCCCCC--------EeCCCCCccCCC
Confidence 4578888888776554455555555553 577777776643
No 111
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=74.41 E-value=3 Score=22.12 Aligned_cols=46 Identities=22% Similarity=0.437 Sum_probs=34.0
Q ss_pred ccccccccccccCc-eecCCCChhhHHhHHHHhhCCCCccccccccccc
Q 037842 15 RFTCGICLDTMKEE-SSTKCGHVFCKSCIVDAIRLQGKCPTCRTRMSVR 62 (78)
Q Consensus 15 ~~~C~iC~~~~~~~-~~~~CgH~fc~~C~~~~~~~~~~CP~C~~~~~~~ 62 (78)
-+.|..|...+... ....=|..||..|..+.+ ...|..|..++...
T Consensus 30 CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~--~~~C~~C~~~I~~~ 76 (126)
T 2xqn_T 30 HFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNH--AVVCQGCHNAIDPE 76 (126)
T ss_dssp GSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHS--CCBCTTTCSBCCTT
T ss_pred CCCcCCCCCCCCcCEEEeECCEEechHHhCcCc--CccCcccCCcCCcC
Confidence 47888898888763 334567789999986543 45799999988753
No 112
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=72.98 E-value=0.77 Score=23.96 Aligned_cols=44 Identities=20% Similarity=0.282 Sum_probs=28.0
Q ss_pred CcccccccccccccCceec---CCCChhhHHhHHHHhhC---CCCcccccc
Q 037842 13 EVRFTCGICLDTMKEESST---KCGHVFCKSCIVDAIRL---QGKCPTCRT 57 (78)
Q Consensus 13 ~~~~~C~iC~~~~~~~~~~---~CgH~fc~~C~~~~~~~---~~~CP~C~~ 57 (78)
.+...| ||.....+..++ .|..-|+..|+..-... .-.||.|+.
T Consensus 26 ~d~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 26 TDVTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CCBCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CCCEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 345778 898776655444 57777888887543222 236999964
No 113
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=72.70 E-value=0.32 Score=30.63 Aligned_cols=46 Identities=22% Similarity=0.416 Sum_probs=34.1
Q ss_pred CcccccccccccccCceec----CCC--ChhhHHhHHHHhhCCCCccccccc
Q 037842 13 EVRFTCGICLDTMKEESST----KCG--HVFCKSCIVDAIRLQGKCPTCRTR 58 (78)
Q Consensus 13 ~~~~~C~iC~~~~~~~~~~----~Cg--H~fc~~C~~~~~~~~~~CP~C~~~ 58 (78)
+....||+|-......+.. .=| +.+|..|-..|......||.|...
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 6678999999976654332 133 456888888888888899999875
No 114
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=72.61 E-value=3.8 Score=20.40 Aligned_cols=41 Identities=12% Similarity=0.285 Sum_probs=27.3
Q ss_pred cccccccccccccCceecCCCChhhHHhHHHHhhCCCCccccccccccc
Q 037842 14 VRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQGKCPTCRTRMSVR 62 (78)
Q Consensus 14 ~~~~C~iC~~~~~~~~~~~CgH~fc~~C~~~~~~~~~~CP~C~~~~~~~ 62 (78)
....|..|.+.+...++..-+..|+..|+ .|-.|+..+...
T Consensus 24 ~~~~C~~C~~~I~~~~~~a~~~~~H~~CF--------~C~~C~~~L~~~ 64 (89)
T 1x64_A 24 RMPLCDKCGSGIVGAVVKARDKYRHPECF--------VCADCNLNLKQK 64 (89)
T ss_dssp SCCBCTTTCCBCCSCCEESSSCEECTTTC--------CCSSSCCCTTTS
T ss_pred cCCCcccCCCEecccEEEECCceECccCC--------EecCCCCCCCCC
Confidence 34579999988876555556666666664 577777776543
No 115
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=72.29 E-value=4.8 Score=19.52 Aligned_cols=32 Identities=22% Similarity=0.361 Sum_probs=22.8
Q ss_pred cccCCCcccccccccccccC-ceecCCCChhhH
Q 037842 8 AVVVGEVRFTCGICLDTMKE-ESSTKCGHVFCK 39 (78)
Q Consensus 8 ~~~~~~~~~~C~iC~~~~~~-~~~~~CgH~fc~ 39 (78)
+.........|..|...+.- +..-.||..||.
T Consensus 8 ~~~~~~~~~rC~~C~kkvgl~~f~CrCg~~FC~ 40 (64)
T 1wg2_A 8 PSRPVRPNNRCFSCNKKVGVMGFKCKCGSTFCG 40 (64)
T ss_dssp SSCCSCCSCSCTTTCCCCTTSCEECTTSCEECS
T ss_pred CCCCCCcCCcChhhCCcccccCeEeecCCEecc
Confidence 34444456789999987554 456689999995
No 116
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=70.15 E-value=1.8 Score=20.25 Aligned_cols=37 Identities=16% Similarity=0.447 Sum_probs=20.0
Q ss_pred cccccccccccCceecCCCChhhHHhHHHHhhCCCCccccccccc
Q 037842 16 FTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQGKCPTCRTRMS 60 (78)
Q Consensus 16 ~~C~iC~~~~~~~~~~~CgH~fc~~C~~~~~~~~~~CP~C~~~~~ 60 (78)
..|+.|.+.+....+..-+..|+..|+ .|-.|+.++.
T Consensus 6 ~~C~~C~~~I~~~~~~a~~~~~H~~CF--------~C~~C~~~L~ 42 (66)
T 1nyp_A 6 PICGACRRPIEGRVVNAMGKQWHVEHF--------VCAKCEKPFL 42 (66)
T ss_dssp CEETTTTEECCSCEECCTTSBEETTTC--------BCTTTCCBCS
T ss_pred CCCcccCCEecceEEEECccccccCcC--------EECCCCCCCC
Confidence 356667766664444444445554443 4556665554
No 117
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=69.59 E-value=5.1 Score=20.24 Aligned_cols=46 Identities=24% Similarity=0.575 Sum_probs=31.9
Q ss_pred ccccccccccccCc-eecCCCChhhHHhHHHHhhCCCCccccccccccc
Q 037842 15 RFTCGICLDTMKEE-SSTKCGHVFCKSCIVDAIRLQGKCPTCRTRMSVR 62 (78)
Q Consensus 15 ~~~C~iC~~~~~~~-~~~~CgH~fc~~C~~~~~~~~~~CP~C~~~~~~~ 62 (78)
-+.|..|...+... ....=|..||..|..+. ....|..|...+...
T Consensus 33 CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~--~~~~C~~C~~~I~~~ 79 (101)
T 2cup_A 33 CFRCAKCLHPLANETFVAKDNKILCNKCTTRE--DSPKCKGCFKAIVAG 79 (101)
T ss_dssp TCCCSSSCCCTTSSCCEEETTEEECHHHHTTC--CCCBCSSSCCBCCSS
T ss_pred CCcccccCCCCCcCeeECcCCEEEChhHhhhh--cCCccccCCCccccC
Confidence 37788888887654 33456778898887432 345799999888743
No 118
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=69.14 E-value=4.2 Score=19.86 Aligned_cols=44 Identities=18% Similarity=0.464 Sum_probs=27.0
Q ss_pred CCcccccccccccccCceec---C--CC-ChhhHHhHHHHhhC----CCCcccccccc
Q 037842 12 GEVRFTCGICLDTMKEESST---K--CG-HVFCKSCIVDAIRL----QGKCPTCRTRM 59 (78)
Q Consensus 12 ~~~~~~C~iC~~~~~~~~~~---~--Cg-H~fc~~C~~~~~~~----~~~CP~C~~~~ 59 (78)
..+...| ||...... .++ . |. .-||..|+. +.. .-.||.|+...
T Consensus 13 ~~~~~~C-~C~~~~~g-~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 13 PNEPTYC-LCHQVSYG-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp TTSCCCS-TTCCCSCS-SEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCCCEE-ECCCCCCC-CEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 3455678 89886443 344 3 54 468888886 332 22699997543
No 119
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=68.81 E-value=2.3 Score=21.29 Aligned_cols=39 Identities=15% Similarity=0.419 Sum_probs=25.0
Q ss_pred ccccccccccccCceecCCCChhhHHhHHHHhhCCCCcccccccccc
Q 037842 15 RFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQGKCPTCRTRMSV 61 (78)
Q Consensus 15 ~~~C~iC~~~~~~~~~~~CgH~fc~~C~~~~~~~~~~CP~C~~~~~~ 61 (78)
...|+.|.+.+....+..-+..|+..|+ .|-.|+..+..
T Consensus 25 ~~~C~~C~~~I~~~~v~a~~~~~H~~CF--------~C~~C~~~L~~ 63 (90)
T 2dar_A 25 TPMCAHCNQVIRGPFLVALGKSWHPEEF--------NCAHCKNTMAY 63 (90)
T ss_dssp CCBBSSSCCBCCSCEEEETTEEECTTTC--------BCSSSCCBCSS
T ss_pred CCCCccCCCEecceEEEECCccccccCC--------ccCCCCCCCCC
Confidence 3568888887766555555555665553 56677776654
No 120
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.72 E-value=0.37 Score=22.51 Aligned_cols=43 Identities=19% Similarity=0.551 Sum_probs=26.5
Q ss_pred CCcccccccccccccCceec--CCCChhhHHhHHHHhhCC----CCccccc
Q 037842 12 GEVRFTCGICLDTMKEESST--KCGHVFCKSCIVDAIRLQ----GKCPTCR 56 (78)
Q Consensus 12 ~~~~~~C~iC~~~~~~~~~~--~CgH~fc~~C~~~~~~~~----~~CP~C~ 56 (78)
...+..|.+|... ..++. .|...|+..|+..-+... -.||.|.
T Consensus 6 ~~~~~~C~vC~~~--g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~ 54 (56)
T 2yql_A 6 SGHEDFCSVCRKS--GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQ 54 (56)
T ss_dssp CSSCCSCSSSCCS--SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHH
T ss_pred CCCCCCCccCCCC--CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhh
Confidence 4456679999874 22222 578888888886543321 1477774
No 121
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=68.66 E-value=2.4 Score=20.01 Aligned_cols=11 Identities=18% Similarity=0.537 Sum_probs=5.1
Q ss_pred ccccccccccC
Q 037842 17 TCGICLDTMKE 27 (78)
Q Consensus 17 ~C~iC~~~~~~ 27 (78)
.|+.|.+.+..
T Consensus 7 ~C~~C~~~I~~ 17 (70)
T 2d8z_A 7 GCVQCKKPITT 17 (70)
T ss_dssp BCSSSCCBCCS
T ss_pred CCcccCCeecc
Confidence 34455544443
No 122
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=68.50 E-value=2.8 Score=19.84 Aligned_cols=25 Identities=20% Similarity=0.518 Sum_probs=11.6
Q ss_pred ccccccccccC--ceecCCCChhhHHh
Q 037842 17 TCGICLDTMKE--ESSTKCGHVFCKSC 41 (78)
Q Consensus 17 ~C~iC~~~~~~--~~~~~CgH~fc~~C 41 (78)
.|..|.+.+.. .++..-+..|+..|
T Consensus 7 ~C~~C~~~I~~~~~~~~a~~~~~H~~C 33 (72)
T 1wyh_A 7 GCSACGETVMPGSRKLEYGGQTWHEHC 33 (72)
T ss_dssp BCSSSCCBCCSSSCEECSTTCCEETTT
T ss_pred CCccCCCccccCccEEEECccccCccc
Confidence 45666665552 23333444444444
No 123
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=68.34 E-value=6.7 Score=18.99 Aligned_cols=39 Identities=21% Similarity=0.613 Sum_probs=22.9
Q ss_pred ccccccccccc--CceecCCCChhhHHhHHHHhhCCCCccccccccccc
Q 037842 16 FTCGICLDTMK--EESSTKCGHVFCKSCIVDAIRLQGKCPTCRTRMSVR 62 (78)
Q Consensus 16 ~~C~iC~~~~~--~~~~~~CgH~fc~~C~~~~~~~~~~CP~C~~~~~~~ 62 (78)
..|+.|.+.+. +.++..-+..|+..|+ .|-.|+.++...
T Consensus 16 ~~C~~C~~~I~~~~~~~~a~~~~~H~~CF--------~C~~C~~~L~~~ 56 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQNVEYKGTVWHKDCF--------TCSNCKQVIGTG 56 (82)
T ss_dssp CBCSSSCCBCCSSSCEEECSSCEEETTTC--------CCSSSCCCCTTS
T ss_pred CcCccCCcccccCceEEEECccccccccC--------chhhCCCccCCC
Confidence 46888887776 3344444555655553 466676666543
No 124
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=67.25 E-value=0.57 Score=22.60 Aligned_cols=45 Identities=22% Similarity=0.509 Sum_probs=28.1
Q ss_pred CcccccccccccccCceec-CCCChhhHHhHHHHhhCC----CCccccccc
Q 037842 13 EVRFTCGICLDTMKEESST-KCGHVFCKSCIVDAIRLQ----GKCPTCRTR 58 (78)
Q Consensus 13 ~~~~~C~iC~~~~~~~~~~-~CgH~fc~~C~~~~~~~~----~~CP~C~~~ 58 (78)
..+..|.||.+.- +-+.- .|...|+..|+..-+... -.||.|...
T Consensus 6 ~~~~~C~vC~~~g-~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 6 KNEDECAVCRDGG-ELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp SCCCSBSSSSCCS-SCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCCccCCCCC-CEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 4567899998742 21221 588888888886544322 259998643
No 125
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=67.21 E-value=2 Score=20.36 Aligned_cols=12 Identities=17% Similarity=0.409 Sum_probs=6.3
Q ss_pred ccccccccccCc
Q 037842 17 TCGICLDTMKEE 28 (78)
Q Consensus 17 ~C~iC~~~~~~~ 28 (78)
.|..|.+.+...
T Consensus 7 ~C~~C~~~I~~~ 18 (70)
T 2d8x_A 7 GCHQCGEFIIGR 18 (70)
T ss_dssp BCSSSCCBCCSC
T ss_pred cCccCCCEecce
Confidence 455555555443
No 126
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=67.16 E-value=0.18 Score=25.47 Aligned_cols=33 Identities=21% Similarity=0.546 Sum_probs=21.5
Q ss_pred cccccc--ccccccC-----ceec------CCCChhhHHhHHHHhh
Q 037842 15 RFTCGI--CLDTMKE-----ESST------KCGHVFCKSCIVDAIR 47 (78)
Q Consensus 15 ~~~C~i--C~~~~~~-----~~~~------~CgH~fc~~C~~~~~~ 47 (78)
..-||- |...+.. .+.- .||+.||..|...|-.
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH~ 70 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHE 70 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECCS
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCccccC
Confidence 455776 6665431 2444 5899999999877643
No 127
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=67.03 E-value=6 Score=19.07 Aligned_cols=37 Identities=22% Similarity=0.592 Sum_probs=20.4
Q ss_pred cccccccccccCceecCCCChhhHHhHHHHhhCCCCccccccccc
Q 037842 16 FTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQGKCPTCRTRMS 60 (78)
Q Consensus 16 ~~C~iC~~~~~~~~~~~CgH~fc~~C~~~~~~~~~~CP~C~~~~~ 60 (78)
..|+.|.+.+....+..-+..|+..|+ .|-.|+.++.
T Consensus 16 ~~C~~C~~~I~~~~v~a~~~~~H~~CF--------~C~~C~~~L~ 52 (80)
T 2cuq_A 16 PRCARCSKTLTQGGVTYRDQPWHRECL--------VCTGCQTPLA 52 (80)
T ss_dssp CCCTTTCCCCCSCCEESSSSEECTTTC--------BCSSSCCBCT
T ss_pred CcCCCCCCEecCcEEEECCchhhhhhC--------CcccCCCcCC
Confidence 357777776655444444445554443 4666666654
No 128
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=66.76 E-value=6.9 Score=20.03 Aligned_cols=27 Identities=26% Similarity=0.584 Sum_probs=21.0
Q ss_pred cccccccccccccC--ceecCCCChhhHH
Q 037842 14 VRFTCGICLDTMKE--ESSTKCGHVFCKS 40 (78)
Q Consensus 14 ~~~~C~iC~~~~~~--~~~~~CgH~fc~~ 40 (78)
....|..|...+.- +..-.||..||..
T Consensus 24 ~~~rC~~C~kkvgl~~~f~CrCg~~FC~~ 52 (85)
T 1wff_A 24 IMKHCFLCGKKTGLATSFECRCGNNFCAS 52 (85)
T ss_dssp CCCBCSSSCCBCSSSSCEECTTCCEECTT
T ss_pred cCccchhhCCeecccCCeEcCCCCEeccc
Confidence 34789999986554 7777899999963
No 129
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.73 E-value=3.1 Score=20.39 Aligned_cols=30 Identities=30% Similarity=0.574 Sum_probs=21.7
Q ss_pred CCCcccccccccccccCc----eecCCCChhhHH
Q 037842 11 VGEVRFTCGICLDTMKEE----SSTKCGHVFCKS 40 (78)
Q Consensus 11 ~~~~~~~C~iC~~~~~~~----~~~~CgH~fc~~ 40 (78)
.......|..|...+.-+ ..-.||.+||..
T Consensus 11 ~~~~~~rC~~C~kk~gL~~~egf~CrCg~~FC~~ 44 (67)
T 1x4w_A 11 KQKSRRRCFQCQTKLELVQQELGSCRCGYVFCML 44 (67)
T ss_dssp SCSCTTBCSSSCCBCCHHHHHHHCCSSSCCCCTT
T ss_pred CCccCCcchhhCCeecccccCceEecCCCEehhc
Confidence 344567899999987655 345799999963
No 130
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=66.15 E-value=3.6 Score=23.39 Aligned_cols=45 Identities=20% Similarity=0.516 Sum_probs=24.5
Q ss_pred cccccccccccCceecCCCChhhHHhHHHHhhCCCCccccccccccc
Q 037842 16 FTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQGKCPTCRTRMSVR 62 (78)
Q Consensus 16 ~~C~iC~~~~~~~~~~~CgH~fc~~C~~~~~~~~~~CP~C~~~~~~~ 62 (78)
+.|..|...+.......=|..||..|..+.+ ...|..|...+...
T Consensus 88 F~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f--~~kC~~C~~~I~~~ 132 (182)
T 2jtn_A 88 LKCSDCHVPLAERCFSRGESVYCKDDFFKRF--GTKCAACQLGIPPT 132 (182)
T ss_dssp TSCTTTCCCCSSCCEEETTEEECHHHHHHTT--SCCCTTTCCCCCSS
T ss_pred CccCCCCCccCCCceeECCEeeecCcccccc--ccccccCCCccCCC
Confidence 4555555554433222334556777765433 34677887776543
No 131
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=66.02 E-value=1.2 Score=28.53 Aligned_cols=31 Identities=19% Similarity=0.546 Sum_probs=0.0
Q ss_pred ccccccccccccCce----ecCCCChhhHHhHHHH
Q 037842 15 RFTCGICLDTMKEES----STKCGHVFCKSCIVDA 45 (78)
Q Consensus 15 ~~~C~iC~~~~~~~~----~~~CgH~fc~~C~~~~ 45 (78)
...|.+|...|.--. -..||++||..|....
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~ 409 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNK 409 (434)
T ss_dssp -----------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCe
Confidence 467999998776321 1379999999998654
No 132
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=64.39 E-value=1.1 Score=23.88 Aligned_cols=25 Identities=36% Similarity=0.969 Sum_probs=16.2
Q ss_pred ecCCCChhhHHhHHHHhhCCCCcccccccc
Q 037842 30 STKCGHVFCKSCIVDAIRLQGKCPTCRTRM 59 (78)
Q Consensus 30 ~~~CgH~fc~~C~~~~~~~~~~CP~C~~~~ 59 (78)
-..||+.|. .-+.....||.|+..-
T Consensus 70 C~~CG~~F~-----~~~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 70 CRKCGFVFK-----AEINIPSRCPKCKSEW 94 (105)
T ss_dssp BTTTCCBCC-----CCSSCCSSCSSSCCCC
T ss_pred hhhCcCeec-----ccCCCCCCCcCCCCCc
Confidence 347999982 1233456899997653
No 133
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=64.22 E-value=2.5 Score=20.66 Aligned_cols=33 Identities=21% Similarity=0.565 Sum_probs=23.0
Q ss_pred CcccccccccccccCceecCC-CChhhHHhHHHHh
Q 037842 13 EVRFTCGICLDTMKEESSTKC-GHVFCKSCIVDAI 46 (78)
Q Consensus 13 ~~~~~C~iC~~~~~~~~~~~C-gH~fc~~C~~~~~ 46 (78)
++..-|.||.+.-. -.-+.| |-.||..|+.+.-
T Consensus 6 ee~pWC~ICneDAt-lrC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 6 SGLPWCCICNEDAT-LRCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp CCCSSCTTTCSCCC-EEETTTTSEEECSSHHHHHT
T ss_pred cCCCeeEEeCCCCe-EEecCCCCceehHHHHHHHc
Confidence 34456999998722 223578 7899999998764
No 134
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=63.62 E-value=0.39 Score=22.71 Aligned_cols=44 Identities=20% Similarity=0.585 Sum_probs=27.2
Q ss_pred cccccccccccccCceec--CCCChhhHHhHHHHhhCC----CCcccccccc
Q 037842 14 VRFTCGICLDTMKEESST--KCGHVFCKSCIVDAIRLQ----GKCPTCRTRM 59 (78)
Q Consensus 14 ~~~~C~iC~~~~~~~~~~--~CgH~fc~~C~~~~~~~~----~~CP~C~~~~ 59 (78)
.+..|.+|... ..++. .|...|+..|+..-+... -.||.|....
T Consensus 4 ~~~~C~vC~~~--g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 4 HEDFCSVCRKS--GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQM 53 (60)
T ss_dssp CCSSCTTTCCC--SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred CCCCCcCCCCC--CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChh
Confidence 45678899874 22222 588888888886544321 2588886543
No 135
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=63.28 E-value=10 Score=17.73 Aligned_cols=31 Identities=19% Similarity=0.646 Sum_probs=14.9
Q ss_pred cccccccccccCc-eecCCCChhhHHhHHHHh
Q 037842 16 FTCGICLDTMKEE-SSTKCGHVFCKSCIVDAI 46 (78)
Q Consensus 16 ~~C~iC~~~~~~~-~~~~CgH~fc~~C~~~~~ 46 (78)
+.|..|...+... ....=+..||..|..+.+
T Consensus 34 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~ 65 (72)
T 1x61_A 34 FVCSTCRAQLRGQHFYAVERRAYCEGCYVATL 65 (72)
T ss_dssp CBCSSSCCBCTTSCEEESSSCEEEHHHHHHHH
T ss_pred CcccccCCcCCcCcCEeeCCeEECHHHHHHHH
Confidence 4555555555432 223344555655555444
No 136
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=63.02 E-value=0.1 Score=26.72 Aligned_cols=11 Identities=27% Similarity=0.942 Sum_probs=6.5
Q ss_pred ccccccccccc
Q 037842 16 FTCGICLDTMK 26 (78)
Q Consensus 16 ~~C~iC~~~~~ 26 (78)
..||.|...+.
T Consensus 3 ~~CP~C~~~l~ 13 (81)
T 2jrp_A 3 ITCPVCHHALE 13 (81)
T ss_dssp CCCSSSCSCCE
T ss_pred CCCCCCCCccc
Confidence 45666666544
No 137
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=62.91 E-value=8.3 Score=18.66 Aligned_cols=30 Identities=23% Similarity=0.529 Sum_probs=21.8
Q ss_pred CCCcccccccccccccC-ceecCCCChhhHH
Q 037842 11 VGEVRFTCGICLDTMKE-ESSTKCGHVFCKS 40 (78)
Q Consensus 11 ~~~~~~~C~iC~~~~~~-~~~~~CgH~fc~~ 40 (78)
.......|..|...+.- +..-.||..||..
T Consensus 11 ~k~~~~rC~~C~kkvgl~~f~CrCg~~FC~~ 41 (64)
T 1wfh_A 11 PPQRPNRCTVCRKRVGLTGFMCRCGTTFCGS 41 (64)
T ss_dssp CCSSCCCCTTTCCCCCTTCEECSSSCEECTT
T ss_pred CCCcCCcChhhCCccCccCEEeecCCEeccc
Confidence 34456789999986554 4566899999963
No 138
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=62.86 E-value=8.8 Score=21.11 Aligned_cols=46 Identities=24% Similarity=0.519 Sum_probs=28.3
Q ss_pred CCcccccccccccccCceecCCCChhhHHhHHHHhh---------C--CCCcccccc
Q 037842 12 GEVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIR---------L--QGKCPTCRT 57 (78)
Q Consensus 12 ~~~~~~C~iC~~~~~~~~~~~CgH~fc~~C~~~~~~---------~--~~~CP~C~~ 57 (78)
...+..|.+|.+--.-..--.|-..||..|+.+.+. . .=.|+.|+-
T Consensus 54 Dg~~~~C~vC~dGG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 54 DGMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp TSCBSSCTTTCCCSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCCcCeecCCCCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 334456999986422111126889999999987521 1 126999854
No 139
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=62.38 E-value=9.8 Score=18.95 Aligned_cols=26 Identities=23% Similarity=0.663 Sum_probs=19.3
Q ss_pred cccccccccccccC-ceecCCCChhhH
Q 037842 14 VRFTCGICLDTMKE-ESSTKCGHVFCK 39 (78)
Q Consensus 14 ~~~~C~iC~~~~~~-~~~~~CgH~fc~ 39 (78)
....|..|...+.. +..-.||..||.
T Consensus 24 ~~nRC~~CrKkvgL~gf~CrCg~~FCs 50 (74)
T 1wfl_A 24 KKNRCFMCRKKVGLTGFDCRCGNLFCG 50 (74)
T ss_dssp CTTBCSSSCCBCGGGCEECTTSCEECS
T ss_pred cCCcChhhCCcccccCeecCCCCEech
Confidence 45689999886443 456679999995
No 140
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=61.36 E-value=11 Score=18.30 Aligned_cols=48 Identities=21% Similarity=0.434 Sum_probs=30.0
Q ss_pred cCCCcccccccccccccCceec---CCCChhhHHhHHHHh---------hCCCCccccccc
Q 037842 10 VVGEVRFTCGICLDTMKEESST---KCGHVFCKSCIVDAI---------RLQGKCPTCRTR 58 (78)
Q Consensus 10 ~~~~~~~~C~iC~~~~~~~~~~---~CgH~fc~~C~~~~~---------~~~~~CP~C~~~ 58 (78)
....+...| +|........++ .|..=||..|+.-.. .....||.|+..
T Consensus 11 ~~d~~~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 11 VYDPNALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp SCCTTCCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred ccCCCCCEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 334445777 898877654444 477678888883211 135579999754
No 141
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=61.18 E-value=9.4 Score=18.60 Aligned_cols=47 Identities=17% Similarity=0.315 Sum_probs=29.5
Q ss_pred CCCcccccccccccc---cCceec--CCCChhhHHhHHHHhhCC--CCcccccc
Q 037842 11 VGEVRFTCGICLDTM---KEESST--KCGHVFCKSCIVDAIRLQ--GKCPTCRT 57 (78)
Q Consensus 11 ~~~~~~~C~iC~~~~---~~~~~~--~CgH~fc~~C~~~~~~~~--~~CP~C~~ 57 (78)
...++..|.||.+.- .+.+++ .|.-.|+..|+..-.... =.|+.|..
T Consensus 12 ~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 12 LIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CCCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 345567899998763 223333 688889999986432222 25888754
No 142
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=60.89 E-value=2.4 Score=20.70 Aligned_cols=37 Identities=22% Similarity=0.562 Sum_probs=23.5
Q ss_pred ccccccccccCceecCCCChhhHHhHHHHhhCCCCcccccccccc
Q 037842 17 TCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQGKCPTCRTRMSV 61 (78)
Q Consensus 17 ~C~iC~~~~~~~~~~~CgH~fc~~C~~~~~~~~~~CP~C~~~~~~ 61 (78)
.|+.|.+.+...++..-+..|+..|+ .|-.|+.++..
T Consensus 17 ~C~~C~~~I~~~~v~a~~~~wH~~CF--------~C~~C~~~L~~ 53 (81)
T 1v6g_A 17 RCFSCDQFIEGEVVSALGKTYHPDCF--------VCAVCRLPFPP 53 (81)
T ss_dssp BCTTTCCBCCSCCEEETTEEECTTTS--------SCSSSCCCCCS
T ss_pred cCccccCEeccceEEECCceeCccCC--------ccccCCCCCCC
Confidence 68888887775544445555555553 46677776653
No 143
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=60.71 E-value=11 Score=21.58 Aligned_cols=35 Identities=20% Similarity=0.527 Sum_probs=24.8
Q ss_pred cccccccccccccCc-eecCCCChhhHHhHHHHhhC
Q 037842 14 VRFTCGICLDTMKEE-SSTKCGHVFCKSCIVDAIRL 48 (78)
Q Consensus 14 ~~~~C~iC~~~~~~~-~~~~CgH~fc~~C~~~~~~~ 48 (78)
+-+.|..|...+... ....=|..||..|..+.+..
T Consensus 33 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~ 68 (192)
T 1b8t_A 33 SCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGP 68 (192)
T ss_dssp TTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHHSC
T ss_pred CCCcCcccCCcCCCCeeEecCCEeeChhhhHhhcCc
Confidence 347888888887764 33345677899999887653
No 144
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=60.71 E-value=4.9 Score=27.90 Aligned_cols=49 Identities=29% Similarity=0.616 Sum_probs=35.6
Q ss_pred CCCcccccccccccccCce----------ecCCCChh--------------------hHHhHHHHhhC--------CCCc
Q 037842 11 VGEVRFTCGICLDTMKEES----------STKCGHVF--------------------CKSCIVDAIRL--------QGKC 52 (78)
Q Consensus 11 ~~~~~~~C~iC~~~~~~~~----------~~~CgH~f--------------------c~~C~~~~~~~--------~~~C 52 (78)
...+-..|+-|+..+.+|. -+.||..| |..|..+|-.. ...|
T Consensus 13 i~pD~a~C~~Cl~e~~dp~~Rry~YpF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfHAqp~aC 92 (657)
T 3ttc_A 13 IVPDAATCPACLAEMNTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCPACDKEYRDPLDRRFHAQPVAC 92 (657)
T ss_dssp CCCCBCCCHHHHHHHTSTTSTTTTCTTCCBTTBBCSGGGBSSSSCSGGGBGGGGSCCCHHHHHHHHCTTSTTTTCTTCCC
T ss_pred cCCchhhhHHHHHHhcCCCCcccCCccccCcCCCchHHhcccCCCCCCCCcccCCCCChHHHHHhCCCCCCcCcCCCCcC
Confidence 3456688999999988761 14677765 99999998652 2259
Q ss_pred ccccccc
Q 037842 53 PTCRTRM 59 (78)
Q Consensus 53 P~C~~~~ 59 (78)
|.|.-.+
T Consensus 93 p~CGP~l 99 (657)
T 3ttc_A 93 PECGPYL 99 (657)
T ss_dssp TTTSCCE
T ss_pred cccCccc
Confidence 9997665
No 145
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=60.51 E-value=4.8 Score=19.05 Aligned_cols=37 Identities=14% Similarity=0.437 Sum_probs=18.0
Q ss_pred cccccccccccC----ceecCCCChhhHHhHHHHhhCCCCccccccccc
Q 037842 16 FTCGICLDTMKE----ESSTKCGHVFCKSCIVDAIRLQGKCPTCRTRMS 60 (78)
Q Consensus 16 ~~C~iC~~~~~~----~~~~~CgH~fc~~C~~~~~~~~~~CP~C~~~~~ 60 (78)
..|+-|.+.+.. .++..-+..|+..|+ .|-.|+.++.
T Consensus 6 ~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF--------~C~~C~~~L~ 46 (72)
T 1x4l_A 6 SGCAGCTNPISGLGGTKYISFEERQWHNDCF--------NCKKCSLSLV 46 (72)
T ss_dssp CSBTTTTBCCCCSSSCSCEECSSCEECTTTC--------BCSSSCCBCT
T ss_pred CCCcCCCccccCCCCcceEEECCcccCcccC--------EeccCCCcCC
Confidence 356666666553 233333444444443 3555555554
No 146
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=60.43 E-value=3.1 Score=20.03 Aligned_cols=37 Identities=14% Similarity=0.388 Sum_probs=20.9
Q ss_pred cccccccccccC----ceecCCCChhhHHhHHHHhhCCCCccccccccc
Q 037842 16 FTCGICLDTMKE----ESSTKCGHVFCKSCIVDAIRLQGKCPTCRTRMS 60 (78)
Q Consensus 16 ~~C~iC~~~~~~----~~~~~CgH~fc~~C~~~~~~~~~~CP~C~~~~~ 60 (78)
..|+.|.+.+.. .++..-+..|+..|+ .|-.|+.++.
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF--------~C~~C~~~L~ 46 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFICFQDSQWHSECF--------NCGKCSVSLV 46 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEEETTEEEEGGGC--------BCTTTCCBCS
T ss_pred CCCccCCCcccCCCCceeEEECCcccCcccC--------ChhhCCCcCC
Confidence 357777777764 333344445555553 4666666554
No 147
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=60.02 E-value=3.2 Score=23.49 Aligned_cols=44 Identities=25% Similarity=0.579 Sum_probs=27.9
Q ss_pred ccccccccccccc---Cc-ee-cCCCChhhHHhHHHHhhCCC--Cccccccc
Q 037842 14 VRFTCGICLDTMK---EE-SS-TKCGHVFCKSCIVDAIRLQG--KCPTCRTR 58 (78)
Q Consensus 14 ~~~~C~iC~~~~~---~~-~~-~~CgH~fc~~C~~~~~~~~~--~CP~C~~~ 58 (78)
++..|.+|...|. +. .. ..|.|.+|..|-. |..... .|-+|+..
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~-~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH-AHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE-CCSSSSSCEEHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhccccc-ccCCCCcEeeHHHHHH
Confidence 5788999999754 22 22 3799999998862 222211 46666543
No 148
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=59.76 E-value=7.1 Score=19.24 Aligned_cols=51 Identities=20% Similarity=0.374 Sum_probs=30.5
Q ss_pred cCCCccccccccccccc-Cceec---CCCChhhHHhHHHHhh-----CCCCcccccccccc
Q 037842 10 VVGEVRFTCGICLDTMK-EESST---KCGHVFCKSCIVDAIR-----LQGKCPTCRTRMSV 61 (78)
Q Consensus 10 ~~~~~~~~C~iC~~~~~-~~~~~---~CgH~fc~~C~~~~~~-----~~~~CP~C~~~~~~ 61 (78)
....+...| ||..... ...++ .|..=||..|+.-... ....||.|+.....
T Consensus 7 ~~~~~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~~ 66 (79)
T 1wep_A 7 GMALVPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFGP 66 (79)
T ss_dssp CCCCCCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSCS
T ss_pred CccCCccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccccCC
Confidence 334455677 8988764 23333 4666688888742111 23479999876543
No 149
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=59.12 E-value=9.7 Score=19.41 Aligned_cols=30 Identities=20% Similarity=0.499 Sum_probs=22.1
Q ss_pred cCCCccccccc--ccccccCceecC-CCChhhH
Q 037842 10 VVGEVRFTCGI--CLDTMKEESSTK-CGHVFCK 39 (78)
Q Consensus 10 ~~~~~~~~C~i--C~~~~~~~~~~~-CgH~fc~ 39 (78)
........|.. |......|+.-. |+..||.
T Consensus 20 ~~~~~~~~C~~~~Ck~~~~l~f~C~~C~~~FC~ 52 (86)
T 1wfe_A 20 TDEHKSYSCSFKGCTDVELVAVICPYCEKNFCL 52 (86)
T ss_dssp CSCSCCEECCSTTCCCEESSCEECTTTCCEECG
T ss_pred ccCCCCCCCCCcCCCCCCccceECCCCCccccc
Confidence 33445678998 998765677665 9999995
No 150
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=59.11 E-value=2.7 Score=20.23 Aligned_cols=38 Identities=26% Similarity=0.587 Sum_probs=22.0
Q ss_pred ccccccccccc-CceecCCCChhhHHhHHHHhhCCCCcccccccccc
Q 037842 16 FTCGICLDTMK-EESSTKCGHVFCKSCIVDAIRLQGKCPTCRTRMSV 61 (78)
Q Consensus 16 ~~C~iC~~~~~-~~~~~~CgH~fc~~C~~~~~~~~~~CP~C~~~~~~ 61 (78)
..|+.|.+.+. ...+..-+..|+..|+ .|..|+.++..
T Consensus 10 ~~C~~C~~~I~~~~~v~a~~~~~H~~CF--------~C~~C~~~L~~ 48 (76)
T 2cu8_A 10 SKCPKCDKTVYFAEKVSSLGKDWHKFCL--------KCERCSKTLTP 48 (76)
T ss_dssp CBCTTTCCBCCTTTEEEETTEEEETTTC--------BCSSSCCBCCT
T ss_pred CCCcCCCCEeECCeEEEECCeEeeCCCC--------CCCCCCCccCC
Confidence 46888888776 3333344545555543 46667666654
No 151
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=58.80 E-value=12 Score=18.03 Aligned_cols=39 Identities=18% Similarity=0.466 Sum_probs=23.1
Q ss_pred ccccccccccc--CceecCCCChhhHHhHHHHhhCCCCccccccccccc
Q 037842 16 FTCGICLDTMK--EESSTKCGHVFCKSCIVDAIRLQGKCPTCRTRMSVR 62 (78)
Q Consensus 16 ~~C~iC~~~~~--~~~~~~CgH~fc~~C~~~~~~~~~~CP~C~~~~~~~ 62 (78)
..|..|.+.+. ..++..=+..|+..|+ .|-.|+.++...
T Consensus 16 ~~C~~C~~~I~~~~~~~~a~~~~~H~~CF--------~C~~C~~~L~~~ 56 (82)
T 2ehe_A 16 NTCAECQQLIGHDSRELFYEDRHFHEGCF--------RCCRCQRSLADE 56 (82)
T ss_dssp CBCTTTCCBCCSSCCBCCCSSCCCBTTTS--------BCTTTCCBCSSC
T ss_pred CcCccCCCccccCcEEEEeCCccccccCC--------eecCCCCccCCC
Confidence 36888888877 3333334555555553 466777766543
No 152
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=58.59 E-value=2.9 Score=20.12 Aligned_cols=25 Identities=16% Similarity=0.365 Sum_probs=10.5
Q ss_pred ccccccccccCceecCCCChhhHHh
Q 037842 17 TCGICLDTMKEESSTKCGHVFCKSC 41 (78)
Q Consensus 17 ~C~iC~~~~~~~~~~~CgH~fc~~C 41 (78)
.|+-|...+...++..-+..|+..|
T Consensus 7 ~C~~C~~~I~~~~v~a~~~~wH~~C 31 (73)
T 1wig_A 7 GCDSCEKYITGRVLEAGEKHYHPSC 31 (73)
T ss_dssp SCSSSCCCCSSCCBCCSSCCBCTTT
T ss_pred CcccCCCEecCeeEEeCCCCCCCCc
Confidence 3555555544433333333333333
No 153
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=58.51 E-value=4.9 Score=19.28 Aligned_cols=31 Identities=23% Similarity=0.793 Sum_probs=19.2
Q ss_pred CCcccccccccccccCc-eec----CCCChhhHHhH
Q 037842 12 GEVRFTCGICLDTMKEE-SST----KCGHVFCKSCI 42 (78)
Q Consensus 12 ~~~~~~C~iC~~~~~~~-~~~----~CgH~fc~~C~ 42 (78)
.++...|++|...+.+. ..+ .|.--|+..|+
T Consensus 5 ~~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cv 40 (65)
T 2vpb_A 5 SDPVYPCGICTNEVNDDQDAILCEASCQKWFHRICT 40 (65)
T ss_dssp ----CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHH
T ss_pred CCCcCcCccCCCccCCCCCeEecccCccccCchhcc
Confidence 45567899999987643 233 45566888887
No 154
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=58.50 E-value=2.4 Score=20.72 Aligned_cols=37 Identities=16% Similarity=0.573 Sum_probs=20.2
Q ss_pred cccccccccccCceecCCCChhhHHhHHHHhhCCCCccccccccc
Q 037842 16 FTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQGKCPTCRTRMS 60 (78)
Q Consensus 16 ~~C~iC~~~~~~~~~~~CgH~fc~~C~~~~~~~~~~CP~C~~~~~ 60 (78)
..|+.|.+.+.+.++..-+..|+..|+ .|..|+.++.
T Consensus 16 ~~C~~C~~~I~~~~~~a~~~~~H~~CF--------~C~~C~~~L~ 52 (81)
T 2dlo_A 16 EKCATCSQPILDRILRAMGKAYHPGCF--------TCVVCHRGLD 52 (81)
T ss_dssp CBCTTTCCBCCSCCEEETTEEECTTTC--------BCSSSCCBCT
T ss_pred CccccCCCeecceeEEECCccccHHhc--------CcccCCCccC
Confidence 457777776665443334444444443 4666666654
No 155
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=58.42 E-value=12 Score=24.33 Aligned_cols=47 Identities=17% Similarity=0.415 Sum_probs=29.9
Q ss_pred CCcccccccccccccCcee--cCCCChhhHHhHHHHhhC----------CCCccccccc
Q 037842 12 GEVRFTCGICLDTMKEESS--TKCGHVFCKSCIVDAIRL----------QGKCPTCRTR 58 (78)
Q Consensus 12 ~~~~~~C~iC~~~~~~~~~--~~CgH~fc~~C~~~~~~~----------~~~CP~C~~~ 58 (78)
...+..|.+|-+--.--.- -.|...||..|+.+.+.. .=.|-.|.-.
T Consensus 90 DG~~~yCr~C~~Gg~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 90 DGYQSYCSICCSGETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp SSSBCSCTTTCCCSSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred CCCcccceEcCCCCeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 3345678888874321111 168899999999988742 1258777543
No 156
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=58.16 E-value=2.1 Score=23.66 Aligned_cols=46 Identities=17% Similarity=0.445 Sum_probs=29.3
Q ss_pred Cccccccccccccc---Cc-e-ecCCCChhhHHhHHHHhhCC----CCccccccc
Q 037842 13 EVRFTCGICLDTMK---EE-S-STKCGHVFCKSCIVDAIRLQ----GKCPTCRTR 58 (78)
Q Consensus 13 ~~~~~C~iC~~~~~---~~-~-~~~CgH~fc~~C~~~~~~~~----~~CP~C~~~ 58 (78)
.....|.+|...+. +. . -..|.|.+|..|-....... -.|-+|+..
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLEQ 107 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHHH
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHHH
Confidence 45678999999874 22 2 23799999998864321111 147777654
No 157
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=57.69 E-value=1.4 Score=23.28 Aligned_cols=36 Identities=22% Similarity=0.479 Sum_probs=24.1
Q ss_pred CCcccccccccccccC-c-ee-cCCCChhhHHhHHHHhh
Q 037842 12 GEVRFTCGICLDTMKE-E-SS-TKCGHVFCKSCIVDAIR 47 (78)
Q Consensus 12 ~~~~~~C~iC~~~~~~-~-~~-~~CgH~fc~~C~~~~~~ 47 (78)
..++..|.+|.+.-.. . +. ..|+..|+..|+.....
T Consensus 4 ~~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 4 GSSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCC
T ss_pred CCCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccc
Confidence 3456789999876432 2 22 26889999999875543
No 158
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=57.54 E-value=1.4 Score=25.36 Aligned_cols=45 Identities=29% Similarity=0.442 Sum_probs=28.5
Q ss_pred cccccccccccccCceec-CCCChhhHHhHHHHhhCC----CCcccccccc
Q 037842 14 VRFTCGICLDTMKEESST-KCGHVFCKSCIVDAIRLQ----GKCPTCRTRM 59 (78)
Q Consensus 14 ~~~~C~iC~~~~~~~~~~-~CgH~fc~~C~~~~~~~~----~~CP~C~~~~ 59 (78)
.+..|.+|.+.= +-+.. .|...||..|+..-+... -.||.|+..-
T Consensus 3 ~~~~C~~C~~~g-~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNGG-ELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCCS-SCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCCC-eeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 345699998642 11111 588889999986544432 2599997654
No 159
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=57.28 E-value=8.7 Score=27.15 Aligned_cols=50 Identities=28% Similarity=0.565 Sum_probs=35.5
Q ss_pred CCCcccccccccccccCce----------ecCCCChh--------------------hHHhHHHHhhC--------CCCc
Q 037842 11 VGEVRFTCGICLDTMKEES----------STKCGHVF--------------------CKSCIVDAIRL--------QGKC 52 (78)
Q Consensus 11 ~~~~~~~C~iC~~~~~~~~----------~~~CgH~f--------------------c~~C~~~~~~~--------~~~C 52 (78)
...+-..|+-|+..+.+|. -+.||..| |..|..+|-.. ...|
T Consensus 107 i~pD~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~RRfhAqp~aC 186 (761)
T 3vth_A 107 VSPDMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQPVAC 186 (761)
T ss_dssp CCCCBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTSTTTTCTTCCC
T ss_pred cCCCccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcccccccCCCCcC
Confidence 3446688999999988762 14677654 99999998652 2259
Q ss_pred cccccccc
Q 037842 53 PTCRTRMS 60 (78)
Q Consensus 53 P~C~~~~~ 60 (78)
|.|.-.+.
T Consensus 187 ~~CGP~l~ 194 (761)
T 3vth_A 187 FDCGPSLS 194 (761)
T ss_dssp TTTSCCEE
T ss_pred CccCCeeE
Confidence 99976653
No 160
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=56.92 E-value=14 Score=17.17 Aligned_cols=30 Identities=17% Similarity=0.524 Sum_probs=12.4
Q ss_pred cccccccccccCc-eecCCCChhhHHhHHHH
Q 037842 16 FTCGICLDTMKEE-SSTKCGHVFCKSCIVDA 45 (78)
Q Consensus 16 ~~C~iC~~~~~~~-~~~~CgH~fc~~C~~~~ 45 (78)
+.|..|...+... ....=+..||..|..+.
T Consensus 32 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~ 62 (69)
T 2cur_A 32 FVCVTCSKKLAGQRFTAVEDQYYCVDCYKNF 62 (69)
T ss_dssp TBCTTTCCBCTTSCEEECSSCEEEHHHHHHH
T ss_pred CEECCCCCCCCCCccEeECCEEECHHHhHHH
Confidence 4444444444322 22233444555554433
No 161
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=56.09 E-value=4.3 Score=19.16 Aligned_cols=10 Identities=30% Similarity=0.673 Sum_probs=5.4
Q ss_pred cccccccccc
Q 037842 17 TCGICLDTMK 26 (78)
Q Consensus 17 ~C~iC~~~~~ 26 (78)
.|+.|.+.+.
T Consensus 7 ~C~~C~~~I~ 16 (72)
T 1x4k_A 7 GCQECKKTIM 16 (72)
T ss_dssp CBSSSCCCCC
T ss_pred CCccCCCccc
Confidence 4555555554
No 162
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=54.65 E-value=1.4 Score=25.87 Aligned_cols=44 Identities=25% Similarity=0.402 Sum_probs=28.6
Q ss_pred cccccccccccccCceec--CCCChhhHHhHHHHhhCC----CCcccccccc
Q 037842 14 VRFTCGICLDTMKEESST--KCGHVFCKSCIVDAIRLQ----GKCPTCRTRM 59 (78)
Q Consensus 14 ~~~~C~iC~~~~~~~~~~--~CgH~fc~~C~~~~~~~~----~~CP~C~~~~ 59 (78)
.+..|.+|...-. +.+ .|...||..|+...+... -.||.|+..-
T Consensus 6 ~~~~C~~C~~~g~--ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 6 NEDWCAVCQNGGD--LLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SCSSBTTTCCCEE--EEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCCc--eEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 4456999986421 222 688889999986544432 2699997643
No 163
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=54.54 E-value=22 Score=18.63 Aligned_cols=30 Identities=33% Similarity=0.585 Sum_probs=19.5
Q ss_pred ccccccccccccc-------Ccee--cCCCChhhHHhHH
Q 037842 14 VRFTCGICLDTMK-------EESS--TKCGHVFCKSCIV 43 (78)
Q Consensus 14 ~~~~C~iC~~~~~-------~~~~--~~CgH~fc~~C~~ 43 (78)
....|.+|+..-. +..+ ..|+..|+..|+.
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 4457888876521 1222 2699999999984
No 164
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=53.97 E-value=4 Score=19.30 Aligned_cols=47 Identities=23% Similarity=0.457 Sum_probs=29.6
Q ss_pred Cccccccccccccc---Cceec--CCCChhhHHhHHHHhh-------CCCCcccccccc
Q 037842 13 EVRFTCGICLDTMK---EESST--KCGHVFCKSCIVDAIR-------LQGKCPTCRTRM 59 (78)
Q Consensus 13 ~~~~~C~iC~~~~~---~~~~~--~CgH~fc~~C~~~~~~-------~~~~CP~C~~~~ 59 (78)
.++..|.+|..... +.+++ .|...|+..|+..-+. ..-.|+.|....
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 45678999997642 22332 6888899888865321 122688886543
No 165
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=52.98 E-value=11 Score=20.18 Aligned_cols=38 Identities=16% Similarity=0.501 Sum_probs=26.0
Q ss_pred ccccccccccccCce-ecCCCChhhHHhHHHHhhCCCCccccccccc
Q 037842 15 RFTCGICLDTMKEES-STKCGHVFCKSCIVDAIRLQGKCPTCRTRMS 60 (78)
Q Consensus 15 ~~~C~iC~~~~~~~~-~~~CgH~fc~~C~~~~~~~~~~CP~C~~~~~ 60 (78)
...|+-|.+.+.... +..-+..|+..|+ .|-.|+..+.
T Consensus 61 ~~~C~~C~~~I~~~~~v~a~~~~wH~~CF--------~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYAMDSYWHSRCL--------KCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEETTEEEETTTS--------BCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEEeCCcEEccccc--------CcCcCCCccc
Confidence 467999999887663 4445666666666 4667777665
No 166
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=52.89 E-value=0.28 Score=25.96 Aligned_cols=41 Identities=27% Similarity=0.758 Sum_probs=25.5
Q ss_pred ccccccccccccCceecCCCChhhHHhHHHHhhCCCCccccccccc
Q 037842 15 RFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQGKCPTCRTRMS 60 (78)
Q Consensus 15 ~~~C~iC~~~~~~~~~~~CgH~fc~~C~~~~~~~~~~CP~C~~~~~ 60 (78)
+..||.|...+.-. =++.+|..|-.. +.....||.|..++.
T Consensus 32 ~~~CP~Cq~eL~~~----g~~~hC~~C~~~-f~~~a~CPdC~q~Le 72 (101)
T 2jne_A 32 ELHCPQCQHVLDQD----NGHARCRSCGEF-IEMKALCPDCHQPLQ 72 (101)
T ss_dssp CCBCSSSCSBEEEE----TTEEEETTTCCE-EEEEEECTTTCSBCE
T ss_pred cccCccCCCcceec----CCEEECccccch-hhccccCcchhhHHH
Confidence 47899999876521 123346666443 233457999988764
No 167
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=52.74 E-value=7.1 Score=27.44 Aligned_cols=33 Identities=30% Similarity=0.744 Sum_probs=25.0
Q ss_pred cccccccccccCc----------eecCCCChhhHHhHHHHhhC
Q 037842 16 FTCGICLDTMKEE----------SSTKCGHVFCKSCIVDAIRL 48 (78)
Q Consensus 16 ~~C~iC~~~~~~~----------~~~~CgH~fc~~C~~~~~~~ 48 (78)
..||+|.-...+. ..++||-.||..|+..+++.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~c~~c~~~~~~~ 56 (776)
T 4gut_A 14 ATCPVCFASASERCAKNGYTSRWYHLSCGEHFCNECFDHYYRS 56 (776)
T ss_dssp CSSCCBSCCCSTTCCTTSCBSCEEEEETTEEEEHHHHHHHHST
T ss_pred ccccHHHHHHHHHHHhCCCCcceeEeccccchhHHHHHHHhcc
Confidence 4678888766543 45799999999999987664
No 168
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=52.65 E-value=9.1 Score=18.23 Aligned_cols=39 Identities=15% Similarity=0.508 Sum_probs=23.9
Q ss_pred cccccccccccC-----ceecCCCChhhHHhHHHHhhCCCCccccccccccc
Q 037842 16 FTCGICLDTMKE-----ESSTKCGHVFCKSCIVDAIRLQGKCPTCRTRMSVR 62 (78)
Q Consensus 16 ~~C~iC~~~~~~-----~~~~~CgH~fc~~C~~~~~~~~~~CP~C~~~~~~~ 62 (78)
..|+-|.+.+.. .++..=+..|+..|+ .|-.|+.++...
T Consensus 16 ~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF--------~C~~C~~~L~~~ 59 (77)
T 2egq_A 16 KKCAGCKNPITGFGKGSSVVAYEGQSWHDYCF--------HCKKCSVNLANK 59 (77)
T ss_dssp CCCSSSCCCCCCCSSCCCEEEETTEEEETTTC--------BCSSSCCBCTTS
T ss_pred ccCcccCCcccCCCCCceeEEECcceeCcccC--------EehhcCCCCCCC
Confidence 468888887774 333344555555553 577777776543
No 169
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=52.61 E-value=6.7 Score=27.71 Aligned_cols=49 Identities=24% Similarity=0.552 Sum_probs=36.0
Q ss_pred CCcccccccccccccCce----------ecCCCChh--------------------hHHhHHHHhhC--------CCCcc
Q 037842 12 GEVRFTCGICLDTMKEES----------STKCGHVF--------------------CKSCIVDAIRL--------QGKCP 53 (78)
Q Consensus 12 ~~~~~~C~iC~~~~~~~~----------~~~CgH~f--------------------c~~C~~~~~~~--------~~~CP 53 (78)
..+-..|+-|+..+.+|. -+.||..| |..|..+|-.. ...||
T Consensus 103 ~pD~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfhAqp~aC~ 182 (772)
T 4g9i_A 103 PPDIAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDPLNRRYHAEPTACP 182 (772)
T ss_dssp CCCCCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCSSSTTTTCTTCCCT
T ss_pred CCchhhhHHHHHHhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCCCCCCCcCCCCCCc
Confidence 456688999999988762 14677765 99999998652 12599
Q ss_pred ccccccc
Q 037842 54 TCRTRMS 60 (78)
Q Consensus 54 ~C~~~~~ 60 (78)
.|.-.+.
T Consensus 183 ~CGP~l~ 189 (772)
T 4g9i_A 183 VCGPSYR 189 (772)
T ss_dssp TTSCCEE
T ss_pred cCCceEE
Confidence 9976654
No 170
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=52.60 E-value=10 Score=21.62 Aligned_cols=43 Identities=21% Similarity=0.479 Sum_probs=27.8
Q ss_pred cccccccccccccCcee---cCCCChhhHHhHHHHhhCC----------CCcccccc
Q 037842 14 VRFTCGICLDTMKEESS---TKCGHVFCKSCIVDAIRLQ----------GKCPTCRT 57 (78)
Q Consensus 14 ~~~~C~iC~~~~~~~~~---~~CgH~fc~~C~~~~~~~~----------~~CP~C~~ 57 (78)
.+..|.+|.+--. -+. -+|...||..||...+... =.|-+|.-
T Consensus 78 ~~~yC~wC~~Gg~-l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P 133 (159)
T 3a1b_A 78 YQSYCTICCGGRE-VLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGH 133 (159)
T ss_dssp SBSSCTTTSCCSE-EEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCS
T ss_pred CcceeeEecCCCe-EEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCC
Confidence 3567888886421 111 1488899999999877631 14877753
No 171
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=51.24 E-value=16 Score=18.07 Aligned_cols=12 Identities=42% Similarity=0.589 Sum_probs=6.8
Q ss_pred cccccccccccc
Q 037842 15 RFTCGICLDTMK 26 (78)
Q Consensus 15 ~~~C~iC~~~~~ 26 (78)
...|+-|.+.+.
T Consensus 15 ~~~C~~C~~~I~ 26 (91)
T 2d8y_A 15 RETCVECQKTVY 26 (91)
T ss_dssp SCBCTTTCCBCC
T ss_pred CCcCccCCCccC
Confidence 345666666554
No 172
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=50.61 E-value=9.7 Score=18.61 Aligned_cols=42 Identities=24% Similarity=0.541 Sum_probs=25.3
Q ss_pred cccccccccccccCc-eecCCCChhhHHhHHHHhhCCCCcccccccccccc
Q 037842 14 VRFTCGICLDTMKEE-SSTKCGHVFCKSCIVDAIRLQGKCPTCRTRMSVRS 63 (78)
Q Consensus 14 ~~~~C~iC~~~~~~~-~~~~CgH~fc~~C~~~~~~~~~~CP~C~~~~~~~~ 63 (78)
....|+.|.+.+... .+..-+..|+..|+ .|-.|+..+....
T Consensus 14 ~~~~C~~C~~~I~~~e~v~a~~~~wH~~CF--------~C~~C~~~L~~~~ 56 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLCVNGHFFHRSCF--------RCHTCEATLWPGG 56 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCCBTTBCCBTTTC--------BCSSSCCBCCTTS
T ss_pred CCCCCcccCCCcccceEEEECCCeeCCCcC--------EEcCCCCCcCCCc
Confidence 446799999987532 33334545555553 5667777665444
No 173
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=50.61 E-value=4.3 Score=19.46 Aligned_cols=42 Identities=17% Similarity=0.328 Sum_probs=26.5
Q ss_pred ccccccccccccCc-eecCCCChhhH-HhHHHHhhCCCCccccccc
Q 037842 15 RFTCGICLDTMKEE-SSTKCGHVFCK-SCIVDAIRLQGKCPTCRTR 58 (78)
Q Consensus 15 ~~~C~iC~~~~~~~-~~~~CgH~fc~-~C~~~~~~~~~~CP~C~~~ 58 (78)
-+.|..|...+... ....=|..||. .|..+.+ ...|..|...
T Consensus 27 CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f--~~~C~~C~~~ 70 (76)
T 1iml_A 27 CLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMF--GPKGFGRGGA 70 (76)
T ss_dssp TCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHS--SCCCSSCCCS
T ss_pred CCCccccCccCCCCceECcCCeEeeCHHHHHHHh--CccCCCcCCc
Confidence 37788888877753 34455677888 5876543 3457677543
No 174
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=49.90 E-value=2.6 Score=21.50 Aligned_cols=48 Identities=17% Similarity=0.497 Sum_probs=32.1
Q ss_pred Cccccccccccccc---Cceec--CCCChhhHHhHHHHhhC--------CCCccccccccc
Q 037842 13 EVRFTCGICLDTMK---EESST--KCGHVFCKSCIVDAIRL--------QGKCPTCRTRMS 60 (78)
Q Consensus 13 ~~~~~C~iC~~~~~---~~~~~--~CgH~fc~~C~~~~~~~--------~~~CP~C~~~~~ 60 (78)
+.+..|.+|...-. +.+++ .|...||..|+..-+.. .-.|+.|.....
T Consensus 14 e~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 14 EMGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp HHCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 34578999998643 33443 68889999998764431 226999976544
No 175
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=48.68 E-value=6.6 Score=20.25 Aligned_cols=42 Identities=19% Similarity=0.476 Sum_probs=25.7
Q ss_pred cccccccccccccCceecC-----CC-ChhhHHhHHHHhhC----CCCcccccccc
Q 037842 14 VRFTCGICLDTMKEESSTK-----CG-HVFCKSCIVDAIRL----QGKCPTCRTRM 59 (78)
Q Consensus 14 ~~~~C~iC~~~~~~~~~~~-----Cg-H~fc~~C~~~~~~~----~~~CP~C~~~~ 59 (78)
+...| +|...... .++. |. .-||..|+. +.. +-.||.|+...
T Consensus 35 e~~yC-iC~~~~~g-~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 35 EPTYC-LCHQVSYG-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCBCS-TTCCBCCS-CCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CCcEE-ECCCCCCC-CEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 45677 99886543 3443 44 458888875 322 23699997543
No 176
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.24 E-value=6.6 Score=19.20 Aligned_cols=40 Identities=25% Similarity=0.517 Sum_probs=24.2
Q ss_pred CcccccccccccccC-ceecCCCChhhHHhHHHHhhCCCCccccccccc
Q 037842 13 EVRFTCGICLDTMKE-ESSTKCGHVFCKSCIVDAIRLQGKCPTCRTRMS 60 (78)
Q Consensus 13 ~~~~~C~iC~~~~~~-~~~~~CgH~fc~~C~~~~~~~~~~CP~C~~~~~ 60 (78)
.....|+-|.+.+.. ..+..-+..|+..|+ .|-.|+..+.
T Consensus 13 ~~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF--------~C~~C~~~L~ 53 (80)
T 2dj7_A 13 RGPSHCAGCKEEIKHGQSLLALDKQWHVSCF--------KCQTCSVILT 53 (80)
T ss_dssp SSCSCCTTTCCCCSSSCCEEETTEEECTTTC--------BCSSSCCBCS
T ss_pred CCCCCCcCcCCeeCCCeEEEECCcccccccC--------CcCcCCCCcC
Confidence 345679999988763 333334445555553 5677777665
No 177
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=47.92 E-value=4.5 Score=18.99 Aligned_cols=47 Identities=26% Similarity=0.489 Sum_probs=28.4
Q ss_pred CCcccccccccccccC-ceec---CCCChhhHHhHHHHhh-----CCCCccccccc
Q 037842 12 GEVRFTCGICLDTMKE-ESST---KCGHVFCKSCIVDAIR-----LQGKCPTCRTR 58 (78)
Q Consensus 12 ~~~~~~C~iC~~~~~~-~~~~---~CgH~fc~~C~~~~~~-----~~~~CP~C~~~ 58 (78)
.++...|++|.....+ ...+ .|..=|+..|+.-... ....||.|+..
T Consensus 3 ~~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 3 SGSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp CSSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 4566789999988753 3333 4665677777642211 23368888653
No 178
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.65 E-value=23 Score=16.91 Aligned_cols=36 Identities=17% Similarity=0.390 Sum_probs=19.1
Q ss_pred ccccccccccCceecCCCChhhHHhHHHHhhCCCCccccccccc
Q 037842 17 TCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQGKCPTCRTRMS 60 (78)
Q Consensus 17 ~C~iC~~~~~~~~~~~CgH~fc~~C~~~~~~~~~~CP~C~~~~~ 60 (78)
.|+.|.+.+.+..+..-+..|+..|+ .|-.|+..+.
T Consensus 17 ~C~~C~~~I~~~~~~a~~~~~H~~CF--------~C~~C~~~L~ 52 (81)
T 1x6a_A 17 FCHGCSLLMTGPFMVAGEFKYHPECF--------ACMSCKVIIE 52 (81)
T ss_dssp BCTTTCCBCCSCCBCCTTCCBCTTSC--------BCTTTCCBCC
T ss_pred cCccCCCCcCceEEEECCceeccccC--------CccCCCCccC
Confidence 46677666664443344444444443 4556655553
No 179
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=47.14 E-value=25 Score=17.37 Aligned_cols=41 Identities=15% Similarity=0.334 Sum_probs=24.9
Q ss_pred CCcccccccccccccCceecCCCChhhHHhHHHHhhC-----CCCcccccccccccc
Q 037842 12 GEVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRL-----QGKCPTCRTRMSVRS 63 (78)
Q Consensus 12 ~~~~~~C~iC~~~~~~~~~~~CgH~fc~~C~~~~~~~-----~~~CP~C~~~~~~~~ 63 (78)
......|++|-..|... .-+...+.. ...|+.|.+.+....
T Consensus 25 ~~~~h~C~~Cgk~F~~~-----------~~L~~H~~~H~~~k~~~C~~C~k~F~~~~ 70 (85)
T 2lv2_A 25 SAECHLCPVCGESFASK-----------GAQERHLRLLHAAQVFPCKYCPATFYSSP 70 (85)
T ss_dssp CCTTEECTTSCCEESSH-----------HHHHHHHHTTSCSSSEECTTSSCEESSHH
T ss_pred CCCCEECCCCCCCcCcH-----------HHHhhhhhhccCCCccCCCCCCCEeCCHH
Confidence 34557888888887753 223333321 236999988886543
No 180
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=46.85 E-value=4.9 Score=18.72 Aligned_cols=36 Identities=17% Similarity=0.487 Sum_probs=18.3
Q ss_pred cccccccccc--CceecCCCChhh--HHhHHHHhhCCCCccccccccc
Q 037842 17 TCGICLDTMK--EESSTKCGHVFC--KSCIVDAIRLQGKCPTCRTRMS 60 (78)
Q Consensus 17 ~C~iC~~~~~--~~~~~~CgH~fc--~~C~~~~~~~~~~CP~C~~~~~ 60 (78)
.|+-|.+.+. +..+..-|..|+ ..|+ .|-.|+.++.
T Consensus 4 ~C~~C~~~I~~~~~~v~a~~~~wH~~~~CF--------~C~~C~~~L~ 43 (65)
T 2iyb_E 4 VCQGCHNAIDPEVQRVTYNNFSWHASTECF--------LCSCCSKCLI 43 (65)
T ss_dssp ECTTTSSEECTTSCEEEETTEEEETTTTTS--------BCTTTCCBCT
T ss_pred CCcCCCCeeccCceEEEECCCccCCCCCCE--------ECCCCCCcCC
Confidence 4666666655 333333444455 4442 4555655554
No 181
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=46.30 E-value=23 Score=16.84 Aligned_cols=37 Identities=27% Similarity=0.563 Sum_probs=18.9
Q ss_pred ccccccccccCceecCCCChhhHHhHHHHhhCCCCcccccccccc
Q 037842 17 TCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQGKCPTCRTRMSV 61 (78)
Q Consensus 17 ~C~iC~~~~~~~~~~~CgH~fc~~C~~~~~~~~~~CP~C~~~~~~ 61 (78)
.|+.|.+.+....+..-+..|+..|+ .|-.|+.++..
T Consensus 17 ~C~~C~~~I~~~~v~a~~~~~H~~CF--------~C~~C~~~L~~ 53 (80)
T 1x3h_A 17 KCGGCNRPVLENYLSAMDTVWHPECF--------VCGDCFTSFST 53 (80)
T ss_dssp BCTTTCCBCCSSCEEETTEEECTTTC--------BCSSSCCBSCS
T ss_pred ccccCCCeecceeEEECCCeEecCcC--------ChhhCCCCCCC
Confidence 56667666655433333444444443 45556555543
No 182
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=45.46 E-value=6.5 Score=15.79 Aligned_cols=11 Identities=27% Similarity=0.609 Sum_probs=5.1
Q ss_pred ccccccccccc
Q 037842 16 FTCGICLDTMK 26 (78)
Q Consensus 16 ~~C~iC~~~~~ 26 (78)
+.|++|...+-
T Consensus 4 ~~CpvCk~q~P 14 (28)
T 2jvx_A 4 FCCPKCQYQAP 14 (28)
T ss_dssp EECTTSSCEES
T ss_pred ccCccccccCc
Confidence 34555554433
No 183
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=45.41 E-value=28 Score=17.54 Aligned_cols=38 Identities=18% Similarity=0.402 Sum_probs=25.2
Q ss_pred cccCCCcccccccccccc-cCcee---cCCCChhhHHhHHHH
Q 037842 8 AVVVGEVRFTCGICLDTM-KEESS---TKCGHVFCKSCIVDA 45 (78)
Q Consensus 8 ~~~~~~~~~~C~iC~~~~-~~~~~---~~CgH~fc~~C~~~~ 45 (78)
..+.....+.|.||.+.- -..+. -.|.-.|+..|..+.
T Consensus 10 NIp~~R~~l~C~iC~~~~~GAciqC~~~~C~~~fHv~CA~~a 51 (87)
T 2lq6_A 10 NIPPARWKLTCYLCKQKGVGASIQCHKANCYTAFHVTCAQKA 51 (87)
T ss_dssp CCCCCCCCCCBTTTTBCCSSCEEECSCTTTCCEEEHHHHHHH
T ss_pred CCChHHhcCCCcCCCCCCCcEeEecCCCCCCCcCcHHHHHHC
Confidence 344556678999997642 22233 258888999998764
No 184
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.37 E-value=26 Score=16.76 Aligned_cols=27 Identities=19% Similarity=0.469 Sum_probs=19.5
Q ss_pred ccccccc--ccccccCceecC-CCChhhHH
Q 037842 14 VRFTCGI--CLDTMKEESSTK-CGHVFCKS 40 (78)
Q Consensus 14 ~~~~C~i--C~~~~~~~~~~~-CgH~fc~~ 40 (78)
....|.. |...-..++.-. |+..||..
T Consensus 11 ~~~~Cs~~~Ck~~~ll~f~C~~C~~~FC~~ 40 (63)
T 1x4v_A 11 FTNKCERAGCRQREMMKLTCERCSRNFCIK 40 (63)
T ss_dssp TCCCCCSTTCCCCCSSCCBCSSSCCBCCHH
T ss_pred cCCCCCccCCCCCCccceECCCCCcccCcc
Confidence 4567888 988744566655 99999864
No 185
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=45.31 E-value=28 Score=17.26 Aligned_cols=29 Identities=21% Similarity=0.513 Sum_probs=20.9
Q ss_pred CCcccccccccccccC-ceecCCCChhhHH
Q 037842 12 GEVRFTCGICLDTMKE-ESSTKCGHVFCKS 40 (78)
Q Consensus 12 ~~~~~~C~iC~~~~~~-~~~~~CgH~fc~~ 40 (78)
......|..|...+.- +..-.||..||..
T Consensus 22 k~~~~RC~~C~kkvgL~~f~CrCg~~FCs~ 51 (74)
T 1wfp_A 22 KSTATRCLSCNKKVGVTGFKCRCGSTFCGT 51 (74)
T ss_dssp TCCCCBCSSSCCBCTTTCEECTTSCEECTT
T ss_pred cccCccchhhcCcccccceEeccCCEeccc
Confidence 3345789999876554 4566899999963
No 186
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=44.75 E-value=0.85 Score=24.38 Aligned_cols=43 Identities=14% Similarity=0.466 Sum_probs=22.3
Q ss_pred ccccccccccCceec---CCCChhhHHhHHHHhhCCC----Ccccccccc
Q 037842 17 TCGICLDTMKEESST---KCGHVFCKSCIVDAIRLQG----KCPTCRTRM 59 (78)
Q Consensus 17 ~C~iC~~~~~~~~~~---~CgH~fc~~C~~~~~~~~~----~CP~C~~~~ 59 (78)
.|.+|...-....++ .|...|+..|+..-+.... .||.|...+
T Consensus 60 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~ 109 (114)
T 2kwj_A 60 SCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELL 109 (114)
T ss_dssp CCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHH
T ss_pred ccCcccccCCCCceEEcCCCCccccccccCCCccCCCCCCeECccccchh
Confidence 455665543322222 5667777777764333211 477775443
No 187
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=44.36 E-value=2.5 Score=20.63 Aligned_cols=41 Identities=22% Similarity=0.629 Sum_probs=24.2
Q ss_pred ccccccccccCceec---CCCChhhHHhHHHHhhCC--C---Ccccccc
Q 037842 17 TCGICLDTMKEESST---KCGHVFCKSCIVDAIRLQ--G---KCPTCRT 57 (78)
Q Consensus 17 ~C~iC~~~~~~~~~~---~CgH~fc~~C~~~~~~~~--~---~CP~C~~ 57 (78)
.|.+|...-....++ .|...|+..|+..-+... + .||.|..
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 455777543333333 588889999987544321 1 5787753
No 188
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=43.56 E-value=15 Score=19.42 Aligned_cols=25 Identities=24% Similarity=0.539 Sum_probs=18.8
Q ss_pred ccccccccccccCceecCCCChhhH
Q 037842 15 RFTCGICLDTMKEESSTKCGHVFCK 39 (78)
Q Consensus 15 ~~~C~iC~~~~~~~~~~~CgH~fc~ 39 (78)
...|..|...-..-+-+.|||++|.
T Consensus 24 ~~~C~~C~~~~~~W~CL~CG~vgCg 48 (109)
T 3c5k_A 24 TQPCGDCGTIQENWVCLSCYQVYCG 48 (109)
T ss_dssp TCCCTTTCCCSSEEEETTTCCEEEC
T ss_pred CCcCccccCCCCeeeeeecCccccC
Confidence 4569999876554466899999984
No 189
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=42.88 E-value=24 Score=18.30 Aligned_cols=35 Identities=17% Similarity=0.289 Sum_probs=25.7
Q ss_pred ccccccccccccC---ceecCCCChhhHHhHHHHhhCC
Q 037842 15 RFTCGICLDTMKE---ESSTKCGHVFCKSCIVDAIRLQ 49 (78)
Q Consensus 15 ~~~C~iC~~~~~~---~~~~~CgH~fc~~C~~~~~~~~ 49 (78)
-+.|..|...+.+ .....=|..||..|..+.+..+
T Consensus 30 CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~~~ 67 (114)
T 1j2o_A 30 CLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGSG 67 (114)
T ss_dssp TCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHTSC
T ss_pred cCcccccCCchhcCCCeeEEECCeeechHHHHHHhCcc
Confidence 4788899888864 3344567789999998877654
No 190
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=41.52 E-value=6.7 Score=15.45 Aligned_cols=12 Identities=33% Similarity=1.002 Sum_probs=6.7
Q ss_pred Cccccccccccc
Q 037842 51 KCPTCRTRMSVR 62 (78)
Q Consensus 51 ~CP~C~~~~~~~ 62 (78)
.||+|.+.+...
T Consensus 8 qcpvcqq~mpaa 19 (29)
T 3vhs_A 8 QCPVCQQMMPAA 19 (29)
T ss_dssp ECTTTCCEEEGG
T ss_pred eChHHHHhCcHH
Confidence 466666555443
No 191
>1wys_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=41.51 E-value=30 Score=17.12 Aligned_cols=30 Identities=17% Similarity=0.400 Sum_probs=21.3
Q ss_pred cCCCccccccc--ccccccCceecC-CCChhhH
Q 037842 10 VVGEVRFTCGI--CLDTMKEESSTK-CGHVFCK 39 (78)
Q Consensus 10 ~~~~~~~~C~i--C~~~~~~~~~~~-CgH~fc~ 39 (78)
........|.. |...-..|..-. |+.+||.
T Consensus 9 ~~~~~g~~Cs~~~C~~~dflpf~C~~C~~~FC~ 41 (75)
T 1wys_A 9 AELDIGQHCQVQHCRQRDFLPFVCDGCSGIFCL 41 (75)
T ss_dssp CCCCCCCCCSCTTTCCCSCCCEECTTTCCEECS
T ss_pred cccccCCCcCcccCCCccceeeECcccCcCcCc
Confidence 33344568888 988755677665 9999995
No 192
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=40.72 E-value=0.69 Score=23.48 Aligned_cols=29 Identities=24% Similarity=0.517 Sum_probs=19.9
Q ss_pred ccccccccccC-----ceecC-CCChhhHHhHHHH
Q 037842 17 TCGICLDTMKE-----ESSTK-CGHVFCKSCIVDA 45 (78)
Q Consensus 17 ~C~iC~~~~~~-----~~~~~-CgH~fc~~C~~~~ 45 (78)
-||-|...+.. .+.-+ |++.||..|-..|
T Consensus 27 wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 27 WCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred ECcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 38877664431 24444 9999999998776
No 193
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=40.47 E-value=2.3 Score=21.22 Aligned_cols=40 Identities=23% Similarity=0.614 Sum_probs=22.9
Q ss_pred ccccccccccCceec---CCCChhhHHhHHHHhhCC-----CCccccc
Q 037842 17 TCGICLDTMKEESST---KCGHVFCKSCIVDAIRLQ-----GKCPTCR 56 (78)
Q Consensus 17 ~C~iC~~~~~~~~~~---~CgH~fc~~C~~~~~~~~-----~~CP~C~ 56 (78)
.|.+|...-....++ .|...|+..|+..-+... =.||.|+
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~ 75 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECR 75 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC
T ss_pred cCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCcc
Confidence 455665544333333 577788888886544421 2477775
No 194
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=40.18 E-value=4 Score=23.67 Aligned_cols=44 Identities=18% Similarity=0.416 Sum_probs=26.5
Q ss_pred cccccccccccCceecCCCChhhHHhHHHHhhCC----CCcccccccc
Q 037842 16 FTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQ----GKCPTCRTRM 59 (78)
Q Consensus 16 ~~C~iC~~~~~~~~~~~CgH~fc~~C~~~~~~~~----~~CP~C~~~~ 59 (78)
..|.+|.+.-.--.--.|...||..|+..-+... -.||.|+..-
T Consensus 3 ~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 3 TICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CCBTTTCCCSSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred CcCccCCCCCceeECCCCCchhccccCCCCcccCCCCCCCCcCccCCC
Confidence 4688888642211112577888888886544331 2599997653
No 195
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=39.53 E-value=30 Score=16.88 Aligned_cols=31 Identities=16% Similarity=0.649 Sum_probs=22.9
Q ss_pred cccccccccccc-cCc--eecCCCChhhHHhHHH
Q 037842 14 VRFTCGICLDTM-KEE--SSTKCGHVFCKSCIVD 44 (78)
Q Consensus 14 ~~~~C~iC~~~~-~~~--~~~~CgH~fc~~C~~~ 44 (78)
.+..|.+|.+.- ... .-+.|.-.||..|+..
T Consensus 29 ~~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~ 62 (78)
T 2ffw_A 29 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKA 62 (78)
T ss_dssp CCCBCSSCCSSSCCBCCEEETTTTEEECHHHHHH
T ss_pred CCccCCcCCCCCCCCCeeEccCccchhhhhhhHh
Confidence 468899998643 222 3368999999999986
No 196
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.45 E-value=14 Score=16.57 Aligned_cols=36 Identities=19% Similarity=0.326 Sum_probs=22.9
Q ss_pred CcccccccccccccCceecCCCChhhHHhHHHHhhCCCCcccccccccc
Q 037842 13 EVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQGKCPTCRTRMSV 61 (78)
Q Consensus 13 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~C~~~~~~~~~~CP~C~~~~~~ 61 (78)
+..+.|.+|...+.....+.- .....|+.|...+..
T Consensus 16 ~~~~~C~~C~k~f~~~~~l~~-------------~~~~~C~~C~~~f~~ 51 (73)
T 2ctu_A 16 DRSQKCSKCGIIFIRRSTLSR-------------RKTPMCEKCRKDSCQ 51 (73)
T ss_dssp CSEEECSSSCCEEECCCCCCC-------------SSSCCCHHHHHTCSC
T ss_pred CCCeeCCcccchhCCHHHhCc-------------CCCCCCCCCChhhcC
Confidence 456889999888876543322 334467777776654
No 197
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.33 E-value=17 Score=17.19 Aligned_cols=39 Identities=21% Similarity=0.558 Sum_probs=20.6
Q ss_pred cccccccccccc--CceecCCCChhhHHhHHHHhhCCCCcccccccccc
Q 037842 15 RFTCGICLDTMK--EESSTKCGHVFCKSCIVDAIRLQGKCPTCRTRMSV 61 (78)
Q Consensus 15 ~~~C~iC~~~~~--~~~~~~CgH~fc~~C~~~~~~~~~~CP~C~~~~~~ 61 (78)
...|+-|.+.+. +.++..-|..|+..|+ .|-.|+.++..
T Consensus 11 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF--------~C~~C~~~L~~ 51 (77)
T 1g47_A 11 SATCERCKGGFAPAEKIVNSNGELYHEQCF--------VCAQCFQQFPE 51 (77)
T ss_dssp CCBCSSSCCBCCSTTTCEEETTEEECTTTC--------CCTTTCCCCGG
T ss_pred CCCchhcCCccCCCceEEEeCccEeccccC--------eECCCCCCCCC
Confidence 356888887764 2333233444444443 45566555543
No 198
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.14 E-value=3.2 Score=20.65 Aligned_cols=40 Identities=18% Similarity=0.614 Sum_probs=23.9
Q ss_pred ccccccccccCceec---CCCChhhHHhHHHHhhC--C---CCccccc
Q 037842 17 TCGICLDTMKEESST---KCGHVFCKSCIVDAIRL--Q---GKCPTCR 56 (78)
Q Consensus 17 ~C~iC~~~~~~~~~~---~CgH~fc~~C~~~~~~~--~---~~CP~C~ 56 (78)
.|.+|...-....++ .|...|+..|+..-+.. . =.||.|.
T Consensus 28 ~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~ 75 (77)
T 2e6s_A 28 SCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCK 75 (77)
T ss_dssp SCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTC
T ss_pred CCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCcc
Confidence 677887643333232 68888888888654432 1 1477774
No 199
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=35.17 E-value=4.3 Score=20.77 Aligned_cols=18 Identities=22% Similarity=0.599 Sum_probs=12.7
Q ss_pred CCcccccccccccceeee
Q 037842 50 GKCPTCRTRMSVRSIRRI 67 (78)
Q Consensus 50 ~~CP~C~~~~~~~~~~~~ 67 (78)
..||+|..+++-.+++..
T Consensus 9 ~~~PlCG~~L~W~eLIeQ 26 (95)
T 2k5c_A 9 AKCPICGSPLKWEELIEE 26 (95)
T ss_dssp EECSSSCCEECHHHHHHH
T ss_pred ccCCcCCCccCHHHHHHH
Confidence 469999998875555443
No 200
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=34.03 E-value=11 Score=19.58 Aligned_cols=13 Identities=38% Similarity=1.089 Sum_probs=10.0
Q ss_pred CCCcccccccccc
Q 037842 49 QGKCPTCRTRMSV 61 (78)
Q Consensus 49 ~~~CP~C~~~~~~ 61 (78)
...||+|+.++..
T Consensus 47 g~~CPvCgs~l~~ 59 (112)
T 1l8d_A 47 KGKCPVCGRELTD 59 (112)
T ss_dssp SEECTTTCCEECH
T ss_pred CCCCCCCCCcCCH
Confidence 4479999988764
No 201
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=33.58 E-value=20 Score=16.60 Aligned_cols=45 Identities=16% Similarity=0.265 Sum_probs=26.2
Q ss_pred CCcccccccccccccCceecCCCChhhHHhHHHHhhCCCCcc--cccccccccceeeeccCCCCC
Q 037842 12 GEVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQGKCP--TCRTRMSVRSIRRIFFPQLQP 74 (78)
Q Consensus 12 ~~~~~~C~iC~~~~~~~~~~~CgH~fc~~C~~~~~~~~~~CP--~C~~~~~~~~~~~~~~~~~~~ 74 (78)
.-+-+.||+|...+.... ..-.|+ .|+..+..++=+.++.+.-+.
T Consensus 7 lL~iL~CP~c~~~L~~~~------------------~~L~C~~~~c~~~YPI~dGIPvlL~~ear 53 (56)
T 2kpi_A 7 LLEILACPACHAPLEERD------------------AELICTGQDCGLAYPVRDGIPVLLVDEAR 53 (56)
T ss_dssp CTTSCCCSSSCSCEEEET------------------TEEEECSSSCCCEEEEETTEECCCTTTCB
T ss_pred HHhheeCCCCCCcceecC------------------CEEEcCCcCCCcEEeeECCEeeeCHHHcc
Confidence 345678999988654210 122466 677777666666665554443
No 202
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=33.19 E-value=37 Score=15.44 Aligned_cols=39 Identities=26% Similarity=0.522 Sum_probs=23.0
Q ss_pred CcccccccccccccCceecCCCChhhHHhHHHHhh-----CCCCccccccccccc
Q 037842 13 EVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIR-----LQGKCPTCRTRMSVR 62 (78)
Q Consensus 13 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~C~~~~~~-----~~~~CP~C~~~~~~~ 62 (78)
+..+.|.+|...|.... -|..... ....|+.|...+...
T Consensus 2 EKpy~C~~C~k~F~~~~-----------~L~~H~~~Ht~ekp~~C~~C~k~F~~~ 45 (60)
T 4gzn_C 2 ERPFFCNFCGKTYRDAS-----------GLSRHRRAHLGYRPRSCPECGKCFRDQ 45 (60)
T ss_dssp CCCEECTTTCCEESSHH-----------HHHHHHHHHHTCCCEECTTTCCEESSH
T ss_pred CCCccCCCCCCEeCCHH-----------HHHHHHHHhCCCcCeECCCCCCCcCCH
Confidence 34577888888776542 2222221 223799998888643
No 203
>1erd_A Pheromone ER-2; NMR {Euplotes raikovi} SCOP: a.10.1.1
Probab=30.39 E-value=6.7 Score=16.52 Aligned_cols=15 Identities=27% Similarity=0.709 Sum_probs=11.1
Q ss_pred cCCCChhhHHhHHHH
Q 037842 31 TKCGHVFCKSCIVDA 45 (78)
Q Consensus 31 ~~CgH~fc~~C~~~~ 45 (78)
.+|.|.+|..|--..
T Consensus 10 ascehtmcgycqgpl 24 (40)
T 1erd_A 10 ASCEHTMCGYCQGPL 24 (40)
T ss_dssp HHTCGGGGGGSCHHH
T ss_pred HhccccccccccCCe
Confidence 479999988775543
No 204
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=29.98 E-value=51 Score=15.69 Aligned_cols=43 Identities=16% Similarity=0.499 Sum_probs=27.5
Q ss_pred CCCcccCCCcccccccccccccCce---ec-CCCChhhH-HhHHHHhh
Q 037842 5 RNGAVVVGEVRFTCGICLDTMKEES---ST-KCGHVFCK-SCIVDAIR 47 (78)
Q Consensus 5 ~~~~~~~~~~~~~C~iC~~~~~~~~---~~-~CgH~fc~-~C~~~~~~ 47 (78)
...+.....-...|.-|..++...- .- ..-|.||. .||..+..
T Consensus 10 ~~~q~~~~~~~v~C~~CKk~lqKGQtAyqrkGs~~LFCS~~CL~~fs~ 57 (62)
T 2das_A 10 TAQQQLTKPAKITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLSSFSS 57 (62)
T ss_dssp CCCCCCSSCSSCBCTTTCCBCCTTSCCEECTTCCCEESSHHHHHHHCC
T ss_pred ccccCCCCccccChhhccchhhcCceeeeecCchhheechHHHcccCC
Confidence 3334444556788999999888642 22 46677875 48776543
No 205
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=29.74 E-value=6.3 Score=23.80 Aligned_cols=41 Identities=22% Similarity=0.643 Sum_probs=22.5
Q ss_pred ccccccccccCceec---CCCChhhHHhHHHHhhC--CC---Ccccccc
Q 037842 17 TCGICLDTMKEESST---KCGHVFCKSCIVDAIRL--QG---KCPTCRT 57 (78)
Q Consensus 17 ~C~iC~~~~~~~~~~---~CgH~fc~~C~~~~~~~--~~---~CP~C~~ 57 (78)
.|.+|...-....++ .|...||..|+..-+.. .+ .||.|..
T Consensus 176 ~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 176 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 577777643222222 68888888898754443 12 5888854
No 206
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=29.72 E-value=24 Score=16.18 Aligned_cols=40 Identities=18% Similarity=0.492 Sum_probs=23.2
Q ss_pred ccccccccccccCc--eecCCCChhhHHhHHHHhhCCCCccccccccccc
Q 037842 15 RFTCGICLDTMKEE--SSTKCGHVFCKSCIVDAIRLQGKCPTCRTRMSVR 62 (78)
Q Consensus 15 ~~~C~iC~~~~~~~--~~~~CgH~fc~~C~~~~~~~~~~CP~C~~~~~~~ 62 (78)
...|+.|...+... ++..=|..|+..|+ .|-.|..++...
T Consensus 11 ~~~C~~C~~~i~~~e~~~~~~~~~~H~~CF--------~C~~C~~~L~~~ 52 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIVNSNGELYHEQCF--------VCAQCFQQFPEG 52 (72)
T ss_dssp TCBCTTTCCBCCTTCEEEEETTEEEETTTS--------SCTTTCCCCGGG
T ss_pred CccchhcCccccCCceEEEeCcCeeCcCCC--------cccCCCCCCCCC
Confidence 34688888877633 33344555555665 356666665543
No 207
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.57 E-value=17 Score=18.15 Aligned_cols=31 Identities=23% Similarity=0.654 Sum_probs=20.8
Q ss_pred CCcccccccccccccCc-----eecCCCChhhHHhH
Q 037842 12 GEVRFTCGICLDTMKEE-----SSTKCGHVFCKSCI 42 (78)
Q Consensus 12 ~~~~~~C~iC~~~~~~~-----~~~~CgH~fc~~C~ 42 (78)
......|+.|.+.|--- +--.|.|..|..|-
T Consensus 22 ~~~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~Cr 57 (76)
T 2csz_A 22 HYSDRTCARCQESLGRLSPKTNTCRGCNHLVCRDCR 57 (76)
T ss_dssp TCCCCBCSSSCCBCSSSCTTTSEETTTTEECCTTSE
T ss_pred CCCccchhhhCccccccccCCCcCcccChhhccccc
Confidence 45567899999976532 12358888777763
No 208
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=28.66 E-value=15 Score=17.68 Aligned_cols=28 Identities=29% Similarity=0.729 Sum_probs=11.0
Q ss_pred cccccccccccCc-eecCCCChhhHHhHH
Q 037842 16 FTCGICLDTMKEE-SSTKCGHVFCKSCIV 43 (78)
Q Consensus 16 ~~C~iC~~~~~~~-~~~~CgH~fc~~C~~ 43 (78)
+.|..|...+... ....=+..||..|..
T Consensus 35 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~ 63 (81)
T 1a7i_A 35 FLCMVCRKNLDSTTVAIHDAEVYCKSCYG 63 (81)
T ss_dssp EECSSSCCEECSSCCEEETTEEECSHHHH
T ss_pred CccCCCCCCCCCCCeEeeCCEEECHHHHH
Confidence 3444444444332 112233344444443
No 209
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=28.03 E-value=30 Score=18.13 Aligned_cols=34 Identities=15% Similarity=0.326 Sum_probs=24.0
Q ss_pred cccccccccccccC--ceecCCCChhhHHhHHHHhh
Q 037842 14 VRFTCGICLDTMKE--ESSTKCGHVFCKSCIVDAIR 47 (78)
Q Consensus 14 ~~~~C~iC~~~~~~--~~~~~CgH~fc~~C~~~~~~ 47 (78)
+-+.|..|...+.. .....=+..||..|....+.
T Consensus 35 ~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~ 70 (123)
T 2l3k_A 35 ECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTK 70 (123)
T ss_dssp TTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHH
T ss_pred ccCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhc
Confidence 34788888888842 34455678889989877654
No 210
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=27.76 E-value=10 Score=17.67 Aligned_cols=40 Identities=20% Similarity=0.524 Sum_probs=23.5
Q ss_pred cccccccccccccCceec---C--CC-ChhhHHhHHHHhhC----CCCcccccc
Q 037842 14 VRFTCGICLDTMKEESST---K--CG-HVFCKSCIVDAIRL----QGKCPTCRT 57 (78)
Q Consensus 14 ~~~~C~iC~~~~~~~~~~---~--Cg-H~fc~~C~~~~~~~----~~~CP~C~~ 57 (78)
+...| ||..... ..++ . |. .-|+..|+. +.. .-.||.|..
T Consensus 9 e~~~C-~C~~~~~-g~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCEE-ECCCcCC-CCEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 45567 8988644 3344 3 44 468888876 332 225888753
No 211
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A
Probab=27.30 E-value=51 Score=17.93 Aligned_cols=25 Identities=16% Similarity=0.332 Sum_probs=17.3
Q ss_pred ccccccccccccCceecCCCChhhH
Q 037842 15 RFTCGICLDTMKEESSTKCGHVFCK 39 (78)
Q Consensus 15 ~~~C~iC~~~~~~~~~~~CgH~fc~ 39 (78)
...|..|...-..-+-+.|||+.|.
T Consensus 34 ~~~C~~C~~~~~LwlCL~CG~vgCg 58 (129)
T 2g45_A 34 GWKCSKCDMRENLWLNLTDGSILCG 58 (129)
T ss_dssp BCCCSSSSCCSSEEEETTTCCEEEC
T ss_pred CCcCccccCcCceEEeccCCccccC
Confidence 3569988876433355789998773
No 212
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=27.19 E-value=2.7 Score=16.15 Aligned_cols=10 Identities=30% Similarity=0.923 Sum_probs=6.0
Q ss_pred hhHHhHHHHh
Q 037842 37 FCKSCIVDAI 46 (78)
Q Consensus 37 fc~~C~~~~~ 46 (78)
||..|-..|+
T Consensus 7 fcetcskpwl 16 (26)
T 1loi_A 7 FCETCSKPWL 16 (26)
T ss_dssp HHHTSSCTTG
T ss_pred HHHhcCCchh
Confidence 6666655554
No 213
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=26.86 E-value=28 Score=16.60 Aligned_cols=14 Identities=43% Similarity=0.631 Sum_probs=10.7
Q ss_pred CCCccccccccccc
Q 037842 11 VGEVRFTCGICLDT 24 (78)
Q Consensus 11 ~~~~~~~C~iC~~~ 24 (78)
...+...|.||...
T Consensus 5 ~~~d~~~C~iC~KT 18 (62)
T 2a20_A 5 QKGDAPTCGICHKT 18 (62)
T ss_dssp CSSCCCCCSSSSCS
T ss_pred ccCCcchhhhhccc
Confidence 44567889999985
No 214
>3d00_A Tungsten formylmethanofuran dehydrogenase subunit; FWDE/GAPDH domain-like fold, structural genomics, joint CENT structural genomics; HET: MSE; 1.90A {Syntrophus aciditrophicus}
Probab=26.26 E-value=24 Score=20.50 Aligned_cols=26 Identities=19% Similarity=0.413 Sum_probs=20.3
Q ss_pred CcccccccccccccCceecCCCChhhHHhHH
Q 037842 13 EVRFTCGICLDTMKEESSTKCGHVFCKSCIV 43 (78)
Q Consensus 13 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~C~~ 43 (78)
.....|++|-+.+.+. |-..|..|..
T Consensus 161 ~~~~~C~~CGE~~~~~-----g~~~C~~C~~ 186 (191)
T 3d00_A 161 GKIVLCPQCREAYPAQ-----DGELCLSCQG 186 (191)
T ss_dssp CCEEECTTTCCEEEGG-----GCSSCHHHHT
T ss_pred cCCEECCcCCCChhhC-----CCcCCccccC
Confidence 4667899999987765 7788888863
No 215
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=26.17 E-value=17 Score=18.60 Aligned_cols=44 Identities=14% Similarity=0.370 Sum_probs=24.6
Q ss_pred CCCcccccccccccccCceec---CCC---ChhhHHhHHHHhhC----CCCccc-cccc
Q 037842 11 VGEVRFTCGICLDTMKEESST---KCG---HVFCKSCIVDAIRL----QGKCPT-CRTR 58 (78)
Q Consensus 11 ~~~~~~~C~iC~~~~~~~~~~---~Cg---H~fc~~C~~~~~~~----~~~CP~-C~~~ 58 (78)
...+...| ||....... ++ .|. .-||..|+. +.. .-.||. |+..
T Consensus 22 ~~~~~~yC-iC~~~~~g~-MI~CD~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~~~ 76 (90)
T 2jmi_A 22 NNQEEVYC-FCRNVSYGP-MVACDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCKEI 76 (90)
T ss_dssp --CCSCCS-TTTCCCSSS-EECCCSSSCSCSCEETTTSS--CSSCTTSCCCSSHHHHHH
T ss_pred CCCCCcEE-EeCCCCCCC-EEEecCCCCccccCcCccCC--CCcCCCCCccCChhhcch
Confidence 34455678 898754443 33 333 457888874 222 236999 8643
No 216
>2uzg_A Ubiquitin carboxyl-terminal hydrolase 33; UBL conjugation pathway, DE-ubiquitination, alternative splicing, metal-binding, thiol protease; NMR {Homo sapiens} SCOP: g.44.1.5
Probab=25.18 E-value=29 Score=17.80 Aligned_cols=26 Identities=23% Similarity=0.263 Sum_probs=17.7
Q ss_pred ccccccccccccC-ceecC--CCChhhHH
Q 037842 15 RFTCGICLDTMKE-ESSTK--CGHVFCKS 40 (78)
Q Consensus 15 ~~~C~iC~~~~~~-~~~~~--CgH~fc~~ 40 (78)
...|..|...-.+ -+-+. |||++|.+
T Consensus 25 ~~~C~~C~~~~~~lw~CL~~~Cg~vgCgr 53 (97)
T 2uzg_A 25 LGTCQDCKVQGPNLWACLENRCSYVGCGE 53 (97)
T ss_dssp TTCCSSSCCCCSSCEEECCTTCCCEECCT
T ss_pred CCcCcCcCCCCCCceeeecccCCCcccCC
Confidence 4579999854444 24467 99999843
No 217
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=24.69 E-value=21 Score=17.09 Aligned_cols=47 Identities=19% Similarity=0.340 Sum_probs=26.1
Q ss_pred cCCCcccccccccccccCceec---CCCChhhHHhHHHHhh---CCCCcccccc
Q 037842 10 VVGEVRFTCGICLDTMKEESST---KCGHVFCKSCIVDAIR---LQGKCPTCRT 57 (78)
Q Consensus 10 ~~~~~~~~C~iC~~~~~~~~~~---~CgH~fc~~C~~~~~~---~~~~CP~C~~ 57 (78)
....+...| ||........++ .|..=|+..|+.-... ....||.|+.
T Consensus 14 ~~~~~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 14 LYFQGLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp CTTTTCCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCCCCceEe-ECCCcCCCCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 344556778 898876654444 3555566666632211 1235777753
No 218
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=24.54 E-value=20 Score=17.51 Aligned_cols=11 Identities=36% Similarity=0.912 Sum_probs=8.9
Q ss_pred CCccccccccc
Q 037842 50 GKCPTCRTRMS 60 (78)
Q Consensus 50 ~~CP~C~~~~~ 60 (78)
..||+|++++.
T Consensus 10 ~~CP~Cgkp~~ 20 (68)
T 1lv3_A 10 VNCPTCGKTVV 20 (68)
T ss_dssp EECTTTCCEEE
T ss_pred CcCCCCCCccc
Confidence 36999998875
No 219
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=23.92 E-value=6.4 Score=18.43 Aligned_cols=41 Identities=20% Similarity=0.491 Sum_probs=24.0
Q ss_pred CcccccccccccccCceec---C--CC-ChhhHHhHHHHhhC----CCCcccccc
Q 037842 13 EVRFTCGICLDTMKEESST---K--CG-HVFCKSCIVDAIRL----QGKCPTCRT 57 (78)
Q Consensus 13 ~~~~~C~iC~~~~~~~~~~---~--Cg-H~fc~~C~~~~~~~----~~~CP~C~~ 57 (78)
.+...| +|.+.... .++ . |. .-|+..|+. +.. .-.||.|+.
T Consensus 7 ~e~~yC-~C~~~~~g-~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 7 NEPTYC-LCHQVSYG-EMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp -CCEET-TTTEECCS-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCcEE-ECCCCCCC-CeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 345667 89886443 344 3 55 478888886 322 225888853
No 220
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=23.41 E-value=41 Score=13.25 Aligned_cols=13 Identities=15% Similarity=0.429 Sum_probs=9.5
Q ss_pred CCccccccccccc
Q 037842 50 GKCPTCRTRMSVR 62 (78)
Q Consensus 50 ~~CP~C~~~~~~~ 62 (78)
..||.|.+.+...
T Consensus 4 ~~C~~C~k~Vy~~ 16 (31)
T 1zfo_A 4 PNCARCGKIVYPT 16 (31)
T ss_dssp CBCSSSCSBCCGG
T ss_pred CcCCccCCEEecc
Confidence 4689998887643
No 221
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=22.40 E-value=37 Score=17.88 Aligned_cols=34 Identities=18% Similarity=0.181 Sum_probs=19.9
Q ss_pred ccCCCcccccccccccccCceec---CCCChhhHHhHH
Q 037842 9 VVVGEVRFTCGICLDTMKEESST---KCGHVFCKSCIV 43 (78)
Q Consensus 9 ~~~~~~~~~C~iC~~~~~~~~~~---~CgH~fc~~C~~ 43 (78)
......+..|.+|.+. .+-+.- .|...|+..|+.
T Consensus 9 ~~~~~~~~~C~~C~~~-G~ll~CD~~~Cp~~fH~~Cl~ 45 (107)
T 4gne_A 9 EPKQMHEDYCFQCGDG-GELVMCDKKDCPKAYHLLCLN 45 (107)
T ss_dssp -CCCSSCSSCTTTCCC-SEEEECCSTTCCCEECTGGGT
T ss_pred CCcCCCCCCCCcCCCC-CcEeEECCCCCCcccccccCc
Confidence 3344566789999842 111121 366778888875
No 222
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=22.14 E-value=36 Score=11.54 Aligned_cols=10 Identities=40% Similarity=1.281 Sum_probs=5.9
Q ss_pred Cccccccccc
Q 037842 51 KCPTCRTRMS 60 (78)
Q Consensus 51 ~CP~C~~~~~ 60 (78)
.|+.|...+.
T Consensus 4 ~C~~C~~~f~ 13 (29)
T 2m0e_A 4 KCPHCDKKFN 13 (29)
T ss_dssp CCSSCCCCCC
T ss_pred cCCCCCcccC
Confidence 4666665554
No 223
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=21.97 E-value=35 Score=11.63 Aligned_cols=11 Identities=27% Similarity=1.041 Sum_probs=4.9
Q ss_pred ccccccccccc
Q 037842 16 FTCGICLDTMK 26 (78)
Q Consensus 16 ~~C~iC~~~~~ 26 (78)
+.|.+|...|.
T Consensus 4 ~~C~~C~k~f~ 14 (27)
T 2kvh_A 4 FSCSLCPQRSR 14 (27)
T ss_dssp EECSSSSCEES
T ss_pred ccCCCcChhhC
Confidence 34444444433
No 224
>1wvk_A AT2G23090/F21P24.15; structural genomics, protein structure initiative, cell free, center for eukaryotic structural genomics, CESG; NMR {Arabidopsis thaliana} SCOP: g.82.1.1
Probab=21.79 E-value=45 Score=17.00 Aligned_cols=14 Identities=21% Similarity=0.788 Sum_probs=9.9
Q ss_pred Cccccccccccccc
Q 037842 13 EVRFTCGICLDTMK 26 (78)
Q Consensus 13 ~~~~~C~iC~~~~~ 26 (78)
-..+.|+||+..|.
T Consensus 43 A~~i~C~VCr~tFm 56 (86)
T 1wvk_A 43 AMSIQCKVCMQTFI 56 (86)
T ss_dssp TCCEEETTTTEEEC
T ss_pred hhCCCChHhHhhHH
Confidence 34578999988553
No 225
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=21.36 E-value=36 Score=11.63 Aligned_cols=10 Identities=20% Similarity=1.019 Sum_probs=4.5
Q ss_pred cccccccccc
Q 037842 16 FTCGICLDTM 25 (78)
Q Consensus 16 ~~C~iC~~~~ 25 (78)
+.|.+|...|
T Consensus 4 ~~C~~C~k~f 13 (28)
T 2kvf_A 4 YSCSVCGKRF 13 (28)
T ss_dssp EECSSSCCEE
T ss_pred ccCCCCCccc
Confidence 3455444443
No 226
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=20.94 E-value=40 Score=11.48 Aligned_cols=12 Identities=25% Similarity=0.913 Sum_probs=6.4
Q ss_pred cccccccccccC
Q 037842 16 FTCGICLDTMKE 27 (78)
Q Consensus 16 ~~C~iC~~~~~~ 27 (78)
+.|.+|...+..
T Consensus 3 ~~C~~C~~~f~~ 14 (29)
T 1ard_A 3 FVCEVCTRAFAR 14 (29)
T ss_dssp CBCTTTCCBCSS
T ss_pred eECCCCCcccCC
Confidence 456666555543
No 227
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=20.79 E-value=13 Score=20.68 Aligned_cols=10 Identities=40% Similarity=1.341 Sum_probs=7.5
Q ss_pred CCcccccccc
Q 037842 50 GKCPTCRTRM 59 (78)
Q Consensus 50 ~~CP~C~~~~ 59 (78)
..||.|+.++
T Consensus 149 ~~Cp~CG~~~ 158 (165)
T 2lcq_A 149 GVCPDCGSKV 158 (165)
T ss_dssp GBCTTTCCBE
T ss_pred CcCCCCCCcc
Confidence 3699998764
No 228
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=20.21 E-value=31 Score=16.65 Aligned_cols=47 Identities=2% Similarity=-0.035 Sum_probs=30.0
Q ss_pred CCcccccccccccccCceecCCCChhhHHhHHHHhhCCCCcccccccccccceeeeccCCCCC
Q 037842 12 GEVRFTCGICLDTMKEESSTKCGHVFCKSCIVDAIRLQGKCPTCRTRMSVRSIRRIFFPQLQP 74 (78)
Q Consensus 12 ~~~~~~C~iC~~~~~~~~~~~CgH~fc~~C~~~~~~~~~~CP~C~~~~~~~~~~~~~~~~~~~ 74 (78)
.-+-+.||+|...+.--. . ...-.|+.|+..+..++-++++.+.-+.
T Consensus 5 LL~iL~CP~ck~~L~~~~--~--------------~~~LiC~~cg~~YPI~dGIPvmL~~Ear 51 (68)
T 2jr6_A 5 FLDILVCPVTKGRLEYHQ--D--------------KQELWSRQAKLAYPIKDGIPYMLENEAR 51 (68)
T ss_dssp SSCCCBCSSSCCBCEEET--T--------------TTEEEETTTTEEEEEETTEECCCTTTCE
T ss_pred HhhheECCCCCCcCeEeC--C--------------CCEEEcCCCCcEecCCCCeeeeChhhcc
Confidence 345678999998665211 0 1122588888888887777777665443
Done!