BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037843
(203 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QDL|B Chain B, The Crystal Structure Of Anthranilate Synthase From
Sulfolobus Solfataricus
Length = 195
Score = 104 bits (260), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 104/201 (51%), Gaps = 37/201 (18%)
Query: 16 VVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAP 75
++IDNYDSF YN+ Q +GEL G + V RNDE+++ ++R P ++ISPGPG P
Sbjct: 5 LIIDNYDSFVYNIAQIVGEL------GSYPIVIRNDEISIKGIERIDPDRLIISPGPGTP 58
Query: 76 QES---GISFRTVLELGPTMPLF--CMGLKCIGEA-----------LEGRLYVLLLVSCM 119
++ G+S + LG P+ C+G + IG A G++ ++LV+
Sbjct: 59 EKREDIGVSLDVIKYLGKRTPILGVCLGHQAIGYAFGAKIRRARKVFHGKISNIILVNNS 118
Query: 120 GKALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWTEDGLIMAARH 179
+L Y G++ F A RYH LV+ D + ED IMA H
Sbjct: 119 PLSLYY------------GIAKEFKATRYHSLVV--DEVHRPLIVDAISAEDNEIMAIHH 164
Query: 180 KKYKHLHGVQFHPESILTSEG 200
++Y ++GVQFHPES+ TS G
Sbjct: 165 EEYP-IYGVQFHPESVGTSLG 184
>pdb|1I7Q|B Chain B, Anthranilate Synthase From S. Marcescens
pdb|1I7Q|D Chain D, Anthranilate Synthase From S. Marcescens
pdb|1I7S|B Chain B, Anthranilate Synthase From Serratia Marcescens In Complex
With Its End Product Inhibitor L-Tryptophan
pdb|1I7S|D Chain D, Anthranilate Synthase From Serratia Marcescens In Complex
With Its End Product Inhibitor L-Tryptophan
Length = 193
Score = 87.4 bits (215), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 100/191 (52%), Gaps = 20/191 (10%)
Query: 15 IVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRND---ELTVAELKRKKPRGVVISPG 71
I+++DN DSFTYNL + + G+ +YRN E+ + L+ + +++SPG
Sbjct: 4 ILLLDNVDSFTYNLVDQL------RASGHQVVIYRNQIGAEVIIERLQHMEQPVLMLSPG 57
Query: 72 PGAPQESGISFRTVLELGPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEK 129
PG P E+G + L +P+ C+G + I EA G++ + GKA ++
Sbjct: 58 PGTPSEAGCMPELLQRLRGQLPIIGICLGHQAIVEAYGGQVGQAGEI-LHGKASAIAHDG 116
Query: 130 EEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWTEDGLIMAARHKKYKHLHGVQ 189
E G+ AG++NP RYH LV S +L V A + ++MA R + + + G Q
Sbjct: 117 E---GMFAGMANPLPVARYHSLV---GSNIPADLTVNARFGE-MVMAVRDDR-RRVCGFQ 168
Query: 190 FHPESILTSEG 200
FHPESILT+ G
Sbjct: 169 FHPESILTTHG 179
>pdb|1I1Q|B Chain B, Structure Of The Cooperative Allosteric Anthranilate
Synthase From Salmonella Typhimurium
Length = 192
Score = 87.4 bits (215), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 97/193 (50%), Gaps = 24/193 (12%)
Query: 15 IVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRND---ELTVAELKRKKPRGVVISPG 71
I+++DN DSFT+NL + + G++ +YRN + + L K +++SPG
Sbjct: 3 ILLLDNIDSFTWNLADQL------RTNGHNVVIYRNHIPAQTLIDRLATMKNPVLMLSPG 56
Query: 72 PGAPQESGISFRTVLELGPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEK 129
PG P E+G + L +P+ C+G + I EA G V G+ L
Sbjct: 57 PGVPSEAGCMPELLTRLRGKLPIIGICLGHQAIVEAYGG------YVGQAGEILHGKATS 110
Query: 130 EEADG--LLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWTEDGLIMAARHKKYKHLHG 187
E DG + AGL+NP RYH LV S L + A +G++MA RH + + G
Sbjct: 111 IEHDGQAMFAGLANPLPVARYHSLV---GSNVPAGLTINAHF-NGMVMAVRHDADR-VCG 165
Query: 188 VQFHPESILTSEG 200
QFHPESILT++G
Sbjct: 166 FQFHPESILTTQG 178
>pdb|1GPM|A Chain A, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
pdb|1GPM|B Chain B, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
pdb|1GPM|C Chain C, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
pdb|1GPM|D Chain D, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
Length = 525
Score = 40.0 bits (92), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 92/203 (45%), Gaps = 33/203 (16%)
Query: 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPG 71
K+ I+++D +T + + + EL G + E++ D +T A+++ P G+++S G
Sbjct: 7 KHRILILDFGSQYTQLVARRVREL------GVYCELWAWD-VTEAQIRDFNPSGIILSGG 59
Query: 72 PGAPQE--SGISFRTVLELGPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYN 127
P + E S + + V E G +P+F C G++ + L G V + Y
Sbjct: 60 PESTTEENSPRAPQYVFEAG--VPVFGVCYGMQTMAMQLGGH------VEASNEREFGYA 111
Query: 128 EKEEAD--GLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWTEDGLIMAARH------ 179
+ E + L+ G+ + TA L D + S +VTA D + +A+
Sbjct: 112 QVEVVNDSALVRGIEDALTADGKPLL----DVWMSHGDKVTAIPSDFITVASTESCPFAI 167
Query: 180 --KKYKHLHGVQFHPESILTSEG 200
+ K +GVQFHPE T +G
Sbjct: 168 MANEEKRFYGVQFHPEVTHTRQG 190
>pdb|2VPI|A Chain A, Human Gmp Synthetase - Glutaminase Domain
pdb|2VPI|B Chain B, Human Gmp Synthetase - Glutaminase Domain
Length = 218
Score = 36.2 bits (82), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 63/147 (42%), Gaps = 11/147 (7%)
Query: 58 LKRKKPRGVVISPGPGA--PQESGISFRTVLELGPTMPLFCMGLKCIGEALEGRLYVLLL 115
+K + R ++IS GP + +++ + +G + C G++ + + G ++
Sbjct: 63 IKEQGFRAIIISGGPNSVYAEDAPWFDPAIFTIGKPVLGICYGMQMMNKVFGGTVHK--- 119
Query: 116 VSCMGKALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWTEDGLIM 175
+ + V+ + L GL HG ++K +D +V A G I+
Sbjct: 120 -KSVREDGVFNISVDNTCSLFRGLQKEEVVLLTHGDSVDK---VADGFKVVA--RSGNIV 173
Query: 176 AARHKKYKHLHGVQFHPESILTSEGKT 202
A + K L+G QFHPE LT GK
Sbjct: 174 AGIANESKKLYGAQFHPEVGLTENGKV 200
>pdb|2VXO|A Chain A, Human Gmp Synthetase In Complex With Xmp
pdb|2VXO|B Chain B, Human Gmp Synthetase In Complex With Xmp
Length = 697
Score = 34.7 bits (78), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 64/146 (43%), Gaps = 11/146 (7%)
Query: 58 LKRKKPRGVVISPGPGA--PQESGISFRTVLELGPTMPLFCMGLKCIGEALEGRLYVLLL 115
+K + R ++IS GP + +++ + +G + C G++ + + G ++
Sbjct: 68 IKEQGFRAIIISGGPNSVYAEDAPWFDPAIFTIGKPVLGICYGMQMMNKVFGGTVHK--- 124
Query: 116 VSCMGKALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWTEDGLIM 175
+ + V+ + L GL HG ++K +D +V A + G I+
Sbjct: 125 -KSVREDGVFNISVDNTCSLFRGLQKEEVVLLTHGDSVDK---VADGFKVVARS--GNIV 178
Query: 176 AARHKKYKHLHGVQFHPESILTSEGK 201
A + K L+G QFHPE LT GK
Sbjct: 179 AGIANESKKLYGAQFHPEVGLTENGK 204
>pdb|2YWB|A Chain A, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus
pdb|2YWB|B Chain B, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus
pdb|2YWB|C Chain C, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus
pdb|2YWB|D Chain D, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus
Length = 503
Score = 30.4 bits (67), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 81/203 (39%), Gaps = 48/203 (23%)
Query: 15 IVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGP-- 72
++V+D +T + + + EL F + + + E+ + +P+ +++S GP
Sbjct: 2 VLVLDFGSQYTRLIARRLRELR-------AFSLILPGDAPLEEVLKHRPQALILSGGPRS 54
Query: 73 ----GAPQESGISFRTVLELGPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYY 126
AP+ F + +PL C G++ + + L GR V G+A
Sbjct: 55 VFDPDAPRPDPRLFSS------GLPLLGICYGMQLLAQELGGR------VERAGRA---- 98
Query: 127 NEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTA----W-----TEDGLIMAA 177
E LL P + GL E + S + VTA W TE+ + AA
Sbjct: 99 ---EYGKALLTRHEGPL----FRGLEGEVQVWMSHQDAVTAPPPGWRVVAETEENPV-AA 150
Query: 178 RHKKYKHLHGVQFHPESILTSEG 200
+GVQFHPE T +G
Sbjct: 151 IASPDGRAYGVQFHPEVAHTPKG 173
>pdb|1WL8|A Chain A, Crystal Structure Of Ph1346 Protein From Pyrococcus
Horikoshii
Length = 189
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 84/196 (42%), Gaps = 31/196 (15%)
Query: 15 IVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGA 74
IV++DN + + + + + L G ++ N + E+K P+G++ S GP
Sbjct: 3 IVIMDNGGQYVHRIWRTLRYL------GVETKIIPNT-TPLEEIKAMNPKGIIFSGGPSL 55
Query: 75 PQESGISFRTVLELGPTMPLFCMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEADG 134
E+ + VLE + +G+ C+G L + + GK E+A+
Sbjct: 56 --ENTGNCEKVLEHYDEFNVPILGI-CLGHQLIAKFF-------GGKV----GRGEKAEY 101
Query: 135 LLAGLSNPFTAGRYHGLVIEKDSFRS--DELE-------VTAWTEDGLIMAARHKKYKHL 185
L + + GL + S DE++ + A +E I A +H++ +
Sbjct: 102 SLVEIEIIDEXEIFKGLPKRLKVWESHMDEVKELPPKFKILARSETXPIEAMKHEELP-I 160
Query: 186 HGVQFHPESILTSEGK 201
+GVQFHPE T +G+
Sbjct: 161 YGVQFHPEVAHTEKGE 176
>pdb|2YWC|A Chain A, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus In Complex With Xmp
pdb|2YWC|B Chain B, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus In Complex With Xmp
pdb|2YWC|C Chain C, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus In Complex With Xmp
pdb|2YWC|D Chain D, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus In Complex With Xmp
Length = 503
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 80/203 (39%), Gaps = 48/203 (23%)
Query: 15 IVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGP-- 72
++V+D +T + + + EL F + + + E+ + +P+ +++S GP
Sbjct: 2 VLVLDFGSQYTRLIARRLRELR-------AFSLILPGDAPLEEVLKHRPQALILSGGPRS 54
Query: 73 ----GAPQESGISFRTVLELGPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYY 126
AP+ F + +PL C G + + + L GR V G+A
Sbjct: 55 VFDPDAPRPDPRLFSS------GLPLLGICYGXQLLAQELGGR------VERAGRA---- 98
Query: 127 NEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTA----W-----TEDGLIMAA 177
E LL P + GL E + S + VTA W TE+ + AA
Sbjct: 99 ---EYGKALLTRHEGPL----FRGLEGEVQVWXSHQDAVTAPPPGWRVVAETEENPV-AA 150
Query: 178 RHKKYKHLHGVQFHPESILTSEG 200
+GVQFHPE T +G
Sbjct: 151 IASPDGRAYGVQFHPEVAHTPKG 173
>pdb|3OLN|A Chain A, Crystal Structure Of The Sra Domain Of E3
Ubiquitin-Protein Ligase Uhrf2
pdb|3OLN|B Chain B, Crystal Structure Of The Sra Domain Of E3
Ubiquitin-Protein Ligase Uhrf2
Length = 231
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 59/153 (38%), Gaps = 14/153 (9%)
Query: 33 GELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGISFRTVLELGPTM 92
G L L+ G+ EV R DE T K G P A Q T+ + +
Sbjct: 68 GAYSLVLAGGFADEVDRGDEFTYTGSGGKNLAGNKRIGAPSADQ-------TLTNMNRAL 120
Query: 93 PLFC---MGLKCIGEALEGRL--YVLLLVSCMGKALVYYNEKE--EADGLLAGLSNPFTA 145
L C + K E+ R V ++ S G+ + Y +E DG+ +
Sbjct: 121 ALNCDAPLDDKIGAESRNWRAGKPVRVIRSFKGRKISKYAPEEGNRYDGIYKVVKYWPEI 180
Query: 146 GRYHGLVIEKDSFRSDELEVTAWTEDGLIMAAR 178
HG ++ + R D++E WT +G+ + R
Sbjct: 181 SSSHGFLVWRYLLRRDDVEPAPWTSEGIERSRR 213
>pdb|2D7J|A Chain A, Crystal Structure Analysis Of Glutamine Amidotransferase
From Pyrococcus Horikoshii Ot3
Length = 209
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 83/196 (42%), Gaps = 31/196 (15%)
Query: 15 IVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGA 74
IV++DN + + + + + L +E + + E+K P+G++ S GP
Sbjct: 23 IVIMDNGGQYVHRIWRTLRYLGVETK-------IIPNTTPLEEIKAMNPKGIIFSGGPSL 75
Query: 75 PQESGISFRTVLELGPTMPLFCMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEADG 134
E+ + VLE + +G+ C+G L + + GK E+A+
Sbjct: 76 --ENTGNCEKVLEHYDEFNVPILGI-CLGHQLIAKFF-------GGKV----GRGEKAEY 121
Query: 135 LLAGLSNPFTAGRYHGLVIEKDSFRS--DELE-------VTAWTEDGLIMAARHKKYKHL 185
L + + GL + S DE++ + A +E I A +H++ +
Sbjct: 122 SLVEIEIIDEDEIFKGLPKRLKVWESHMDEVKELPPKFKILARSETCPIEAMKHEELP-I 180
Query: 186 HGVQFHPESILTSEGK 201
+GVQFHPE T +G+
Sbjct: 181 YGVQFHPEVAHTEKGE 196
>pdb|2NQA|A Chain A, Catalytic Domain Of Human Calpain 8
pdb|2NQA|B Chain B, Catalytic Domain Of Human Calpain 8
Length = 326
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 71 GPGAPQESGISFRTVLELGPTMPLFCMGLKCIGEALEGRLYVLLLVSCMG 120
GPG+PQ GI ++ EL P+ P F +G + +G L L++ +
Sbjct: 44 GPGSPQTQGIIWKRPTELXPS-PQFIVGGATRTDIXQGGLGDCWLLAAIA 92
>pdb|2DOK|A Chain A, Crystal Structure Of The Pin Domain Of Human Est1a
pdb|2DOK|B Chain B, Crystal Structure Of The Pin Domain Of Human Est1a
Length = 186
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 48/123 (39%), Gaps = 11/123 (8%)
Query: 73 GAPQESGISFRTVLELGPTMPLFCMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEA 132
G+P+ + R + L P F L + LE R Y+L++ L+ NE
Sbjct: 1 GSPEFMELEIRPLF-LVPDTNGFIDHLASLARLLESRKYILVV------PLIVINE---L 50
Query: 133 DGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWTEDGLIMAARHKKYKHLHGVQFHP 192
DGL G AG Y +V EK + LE + D + A + L + F
Sbjct: 51 DGLAKGQETDHRAGGYARVVQEKARKSIEFLEQRFESRDSCLRALTSRG-NELESIAFRS 109
Query: 193 ESI 195
E I
Sbjct: 110 EDI 112
>pdb|3RJ1|F Chain F, Architecture Of The Mediator Head Module
pdb|3RJ1|M Chain M, Architecture Of The Mediator Head Module
pdb|3RJ1|T Chain T, Architecture Of The Mediator Head Module
Length = 210
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%)
Query: 133 DGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWTEDGLIMAARHKKYK 183
DGL L N F++ + GL+IE + + E E +G + R K+YK
Sbjct: 133 DGLTVRLVNLFSSTGFKGLLIELQADEAGEFETKIAGIEGHLAEIRAKEYK 183
>pdb|4GWP|F Chain F, Structure Of The Mediator Head Module From S. Cerevisiae
pdb|4GWQ|F Chain F, Structure Of The Mediator Head Module From S. Cerevisiae
In Complex With The Carboxy-Terminal Domain (Ctd) Of Rna
Polymerase Ii Rpb1 Subunit
Length = 210
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%)
Query: 133 DGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWTEDGLIMAARHKKYK 183
DGL L N F++ + GL+IE + + E E +G + R K+YK
Sbjct: 133 DGLTVRLVNLFSSTGFKGLLIELQADEAGEFETKIAGIEGHLAEIRAKEYK 183
>pdb|2HZS|A Chain A, Structure Of The Mediator Head Submodule Med8c1820
pdb|2HZS|C Chain C, Structure Of The Mediator Head Submodule Med8c1820
pdb|2HZS|E Chain E, Structure Of The Mediator Head Submodule Med8c1820
pdb|2HZS|G Chain G, Structure Of The Mediator Head Submodule Med8c1820
Length = 209
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%)
Query: 133 DGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWTEDGLIMAARHKKYK 183
DGL L N F++ + GL+IE + + E E +G + R K+YK
Sbjct: 132 DGLTVRLVNLFSSTGFKGLLIELQADEAGEFETKIAGIEGHLAEIRAKEYK 182
>pdb|2HZM|A Chain A, Structure Of The Mediator Head Subcomplex Med18/20
pdb|2HZM|C Chain C, Structure Of The Mediator Head Subcomplex Med18/20
pdb|2HZM|E Chain E, Structure Of The Mediator Head Subcomplex Med18/20
pdb|2HZM|G Chain G, Structure Of The Mediator Head Subcomplex Med18/20
Length = 212
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%)
Query: 133 DGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWTEDGLIMAARHKKYK 183
DGL L N F++ + GL+IE + + E E +G + R K+YK
Sbjct: 135 DGLTVRLVNLFSSTGFKGLLIELQADEAGEFETKIAGIEGHLAEIRAKEYK 185
>pdb|1XHS|A Chain A, Solution Nmr Structure Of Protein Ytfp From Escherichia
Coli. Northeast Structural Genomics Consortium Target
Er111
Length = 121
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 18 IDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRG 65
IDNY Y+L Y G + + H EVYR D T+AEL + RG
Sbjct: 30 IDNYQ--LYSLGHYPGAVPGNGT--VHGEVYRIDNATLAELDALRTRG 73
>pdb|3TQI|A Chain A, Structure Of The Gmp Synthase (Guaa) From Coxiella
Burnetii
pdb|3TQI|B Chain B, Structure Of The Gmp Synthase (Guaa) From Coxiella
Burnetii
pdb|3TQI|C Chain C, Structure Of The Gmp Synthase (Guaa) From Coxiella
Burnetii
pdb|3TQI|D Chain D, Structure Of The Gmp Synthase (Guaa) From Coxiella
Burnetii
Length = 527
Score = 27.3 bits (59), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 62/157 (39%), Gaps = 15/157 (9%)
Query: 51 DELTVAELKRKKPRGVVISPGPGAPQESGISFRT---VLELGPTMPLFCMGLKCIGEALE 107
DE T+ + P G+++S GP S + R + E+G + C G++ + L
Sbjct: 45 DEETIRDFN---PHGIILSGGPETVTLSH-TLRAPAFIFEIGCPVLGICYGMQTMAYQLG 100
Query: 108 GRLYVLLLVSCMGKALVYYNEKEEADGLLAGLSNP----FTAGRYHGLVIEKDSFRSDEL 163
G++ L N DG+ +S HG ++ S
Sbjct: 101 GKVNRTAKAEFGHAQLRVLNPAFLFDGIEDQVSPQGEPLLDVWMSHGDIV---SELPPGF 157
Query: 164 EVTAWTEDGLIMAARHKKYKHLHGVQFHPESILTSEG 200
E TA T++ + A K + G+QFHPE T +G
Sbjct: 158 EATACTDNSPLAAMADFK-RRFFGLQFHPEVTHTPQG 193
>pdb|1LEH|A Chain A, Leucine Dehydrogenase From Bacillus Sphaericus
pdb|1LEH|B Chain B, Leucine Dehydrogenase From Bacillus Sphaericus
Length = 364
Score = 26.6 bits (57), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 164 EVTAWTEDGLIMAARHKKYKHLHGVQFHPESILTSEG 200
+V A + D + RH KY H G+ + P+ ++ + G
Sbjct: 254 KVIAGSADNQLKDPRHGKYLHELGIVYAPDYVINAGG 290
>pdb|2HWW|A Chain A, Structure Of Pin Domain Of Human Smg6
pdb|2HWW|B Chain B, Structure Of Pin Domain Of Human Smg6
pdb|2HWW|C Chain C, Structure Of Pin Domain Of Human Smg6
Length = 181
Score = 26.6 bits (57), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 42/110 (38%), Gaps = 10/110 (9%)
Query: 86 LELGPTMPLFCMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEADGLLAGLSNPFTA 145
L L P F L + LE R Y+L++ L+ NE DGL G A
Sbjct: 8 LFLVPDTNGFIDHLASLARLLESRKYILVV------PLIVINE---LDGLAKGQETDHRA 58
Query: 146 GRYHGLVIEKDSFRSDELEVTAWTEDGLIMAARHKKYKHLHGVQFHPESI 195
G Y +V EK + LE + D + A + L + F E I
Sbjct: 59 GGYARVVQEKARKSIEFLEQRFESRDSCLRALTSRG-NELESIAFRSEDI 107
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.138 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,616,572
Number of Sequences: 62578
Number of extensions: 279887
Number of successful extensions: 608
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 585
Number of HSP's gapped (non-prelim): 22
length of query: 203
length of database: 14,973,337
effective HSP length: 94
effective length of query: 109
effective length of database: 9,091,005
effective search space: 990919545
effective search space used: 990919545
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)