Query 037843
Match_columns 203
No_of_seqs 191 out of 1627
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 04:54:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037843.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037843hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0512 PabA Anthranilate/para 100.0 9.8E-47 2.1E-51 287.1 18.4 177 12-201 1-181 (191)
2 PRK08007 para-aminobenzoate sy 100.0 1.5E-42 3.4E-47 270.0 19.7 175 14-201 1-178 (187)
3 PRK07649 para-aminobenzoate/an 100.0 7E-42 1.5E-46 267.7 18.7 175 14-201 1-178 (195)
4 PLN02335 anthranilate synthase 100.0 2E-41 4.3E-46 270.0 20.8 185 10-201 16-203 (222)
5 TIGR00566 trpG_papA glutamine 100.0 6.5E-41 1.4E-45 261.1 19.8 175 14-201 1-179 (188)
6 PRK06774 para-aminobenzoate sy 100.0 1.7E-40 3.7E-45 259.5 19.3 176 14-201 1-182 (191)
7 CHL00101 trpG anthranilate syn 100.0 2.4E-40 5.2E-45 258.4 19.0 177 14-201 1-179 (190)
8 PRK05637 anthranilate synthase 100.0 6.8E-40 1.5E-44 258.6 18.6 177 12-201 1-195 (208)
9 PRK05670 anthranilate synthase 100.0 1.3E-39 2.8E-44 254.1 19.5 175 14-201 1-178 (189)
10 KOG0026 Anthranilate synthase, 100.0 6.2E-40 1.3E-44 242.0 15.1 184 12-202 18-205 (223)
11 PRK08857 para-aminobenzoate sy 100.0 2.7E-39 5.8E-44 253.1 19.0 175 14-201 1-183 (193)
12 PRK06895 putative anthranilate 100.0 3.5E-39 7.6E-44 251.9 19.5 175 13-201 2-179 (190)
13 TIGR00888 guaA_Nterm GMP synth 100.0 5.2E-37 1.1E-41 239.3 19.4 171 15-201 1-174 (188)
14 cd01743 GATase1_Anthranilate_S 100.0 4.9E-37 1.1E-41 238.7 18.8 172 15-201 1-177 (184)
15 PRK07765 para-aminobenzoate sy 100.0 2.6E-36 5.5E-41 239.5 18.9 176 13-201 1-182 (214)
16 PRK09522 bifunctional glutamin 100.0 2.9E-36 6.2E-41 266.1 18.8 174 12-201 1-180 (531)
17 cd01742 GATase1_GMP_Synthase T 100.0 4.9E-36 1.1E-40 232.3 17.2 170 15-201 1-174 (181)
18 PRK00758 GMP synthase subunit 100.0 8.9E-36 1.9E-40 231.6 17.7 168 14-201 1-171 (184)
19 COG0518 GuaA GMP synthase - Gl 100.0 3.3E-36 7.1E-41 235.1 14.9 170 12-196 1-179 (198)
20 PRK14607 bifunctional glutamin 100.0 2E-35 4.2E-40 262.0 19.0 175 14-201 1-179 (534)
21 PLN02347 GMP synthetase 100.0 3.2E-35 7E-40 259.2 19.2 174 13-201 11-192 (536)
22 PF00117 GATase: Glutamine ami 100.0 3.5E-35 7.6E-40 229.4 14.7 174 16-200 1-181 (192)
23 PRK00074 guaA GMP synthase; Re 100.0 2.5E-34 5.4E-39 253.6 19.1 173 12-201 3-179 (511)
24 PLN02889 oxo-acid-lyase/anthra 100.0 2.5E-34 5.5E-39 263.4 17.4 176 13-201 82-325 (918)
25 TIGR01815 TrpE-clade3 anthrani 100.0 4.2E-33 9.1E-38 252.4 19.6 175 12-200 516-694 (717)
26 PRK13566 anthranilate synthase 100.0 9.7E-33 2.1E-37 250.4 20.0 174 12-199 526-703 (720)
27 cd01744 GATase1_CPSase Small c 100.0 1E-31 2.2E-36 207.7 18.4 162 15-198 1-167 (178)
28 PRK09065 glutamine amidotransf 100.0 2.2E-32 4.8E-37 220.1 14.8 172 12-196 1-190 (237)
29 PLN02771 carbamoyl-phosphate s 100.0 1.2E-31 2.5E-36 227.9 17.9 166 13-199 241-409 (415)
30 PRK07053 glutamine amidotransf 100.0 1.3E-31 2.8E-36 215.1 16.8 172 11-196 1-182 (234)
31 PRK12564 carbamoyl phosphate s 100.0 3.8E-31 8.3E-36 223.3 18.8 166 12-199 177-347 (360)
32 TIGR01368 CPSaseIIsmall carbam 100.0 3.3E-31 7.2E-36 223.3 18.3 167 13-199 174-343 (358)
33 PRK06490 glutamine amidotransf 100.0 2.8E-31 6.1E-36 213.8 16.5 167 11-196 6-183 (239)
34 PRK07567 glutamine amidotransf 100.0 2.2E-31 4.7E-36 214.9 15.2 172 12-197 1-195 (242)
35 CHL00197 carA carbamoyl-phosph 100.0 9.6E-31 2.1E-35 221.7 18.4 166 12-200 192-362 (382)
36 PRK05665 amidotransferase; Pro 100.0 1.3E-30 2.9E-35 209.8 17.3 171 13-197 3-191 (240)
37 PRK12838 carbamoyl phosphate s 100.0 1.6E-30 3.4E-35 219.0 18.3 167 12-198 167-336 (354)
38 COG0505 CarA Carbamoylphosphat 100.0 1E-30 2.2E-35 214.8 16.1 168 11-199 178-349 (368)
39 TIGR01823 PabB-fungal aminodeo 100.0 6E-30 1.3E-34 233.5 19.2 178 11-200 4-192 (742)
40 PRK08250 glutamine amidotransf 100.0 8.4E-30 1.8E-34 204.9 15.8 169 13-196 1-184 (235)
41 cd01741 GATase1_1 Subgroup of 100.0 1.9E-29 4.1E-34 196.6 14.9 167 14-193 1-180 (188)
42 PRK13146 hisH imidazole glycer 100.0 3.3E-29 7.2E-34 198.2 13.4 167 12-200 1-197 (209)
43 PRK13170 hisH imidazole glycer 100.0 3.4E-28 7.3E-33 190.7 16.2 162 13-201 1-187 (196)
44 COG0118 HisH Glutamine amidotr 100.0 2.9E-28 6.2E-33 187.0 14.9 164 12-197 1-190 (204)
45 cd01748 GATase1_IGP_Synthase T 100.0 1.9E-28 4.1E-33 192.5 14.1 163 15-200 1-190 (198)
46 CHL00188 hisH imidazole glycer 100.0 5.6E-28 1.2E-32 191.0 14.8 168 12-201 1-200 (210)
47 PRK11366 puuD gamma-glutamyl-g 100.0 3.6E-27 7.7E-32 191.6 17.8 132 62-200 61-231 (254)
48 PRK13181 hisH imidazole glycer 100.0 1.4E-27 3E-32 187.8 13.4 160 14-196 1-186 (199)
49 PRK13141 hisH imidazole glycer 99.9 1.5E-26 3.3E-31 182.6 14.6 161 14-196 1-188 (205)
50 PRK13152 hisH imidazole glycer 99.9 3.1E-26 6.7E-31 180.3 15.7 159 14-196 1-188 (201)
51 KOG1622 GMP synthase [Nucleoti 99.9 2.6E-27 5.7E-32 198.6 9.8 174 12-202 16-195 (552)
52 TIGR01855 IMP_synth_hisH imida 99.9 4.1E-26 8.9E-31 179.0 14.2 159 15-196 1-183 (196)
53 cd01747 GATase1_Glutamyl_Hydro 99.9 7.5E-26 1.6E-30 185.4 14.9 168 26-201 23-221 (273)
54 PRK14004 hisH imidazole glycer 99.9 1.1E-25 2.5E-30 177.8 15.2 167 14-201 1-200 (210)
55 cd01745 GATase1_2 Subgroup of 99.9 3.2E-26 7E-31 178.6 11.8 141 21-200 17-181 (189)
56 cd01746 GATase1_CTP_Synthase T 99.9 6E-26 1.3E-30 182.1 12.1 174 17-199 12-225 (235)
57 PRK13143 hisH imidazole glycer 99.9 2.9E-25 6.3E-30 174.6 15.3 161 13-196 1-184 (200)
58 PRK13525 glutamine amidotransf 99.9 4.1E-25 8.8E-30 172.3 15.9 158 12-197 1-176 (189)
59 PRK13527 glutamine amidotransf 99.9 6.6E-25 1.4E-29 172.7 15.5 165 15-197 5-186 (200)
60 PF07722 Peptidase_C26: Peptid 99.9 7.5E-25 1.6E-29 174.2 15.4 154 26-193 27-217 (217)
61 KOG1224 Para-aminobenzoate (PA 99.9 4.4E-25 9.5E-30 188.4 12.0 180 12-201 14-207 (767)
62 COG2071 Predicted glutamine am 99.9 5.8E-25 1.3E-29 172.9 11.6 159 30-199 30-224 (243)
63 KOG3179 Predicted glutamine sy 99.9 5E-25 1.1E-29 167.9 10.0 163 21-196 23-196 (245)
64 PRK06186 hypothetical protein; 99.9 6.7E-24 1.4E-28 168.1 13.5 179 13-199 2-213 (229)
65 PLN02617 imidazole glycerol ph 99.9 1.7E-22 3.6E-27 178.5 16.6 166 8-196 2-196 (538)
66 TIGR00337 PyrG CTP synthase. C 99.9 9.5E-23 2.1E-27 177.7 14.6 182 12-199 289-513 (525)
67 PRK05380 pyrG CTP synthetase; 99.9 1.7E-22 3.6E-27 176.2 13.9 179 12-199 288-513 (533)
68 PRK13142 hisH imidazole glycer 99.9 5.8E-22 1.3E-26 153.9 14.2 152 14-196 1-174 (192)
69 KOG0370 Multifunctional pyrimi 99.9 2.8E-22 6.2E-27 180.1 13.9 167 9-199 169-339 (1435)
70 cd01749 GATase1_PB Glutamine A 99.9 1.2E-21 2.7E-26 152.0 13.5 153 15-197 3-175 (183)
71 TIGR03800 PLP_synth_Pdx2 pyrid 99.9 8.2E-21 1.8E-25 147.4 15.2 155 14-196 1-174 (184)
72 COG0504 PyrG CTP synthase (UTP 99.9 2.8E-21 6.2E-26 164.6 12.6 182 13-201 289-515 (533)
73 PLN02327 CTP synthase 99.9 2.9E-21 6.2E-26 168.8 11.8 139 62-200 362-534 (557)
74 PRK05368 homoserine O-succinyl 99.8 1.4E-19 3E-24 149.3 15.9 176 12-196 35-240 (302)
75 TIGR01737 FGAM_synth_I phospho 99.8 1.5E-19 3.2E-24 144.8 12.3 173 13-200 1-216 (227)
76 KOG2387 CTP synthase (UTP-ammo 99.7 1.6E-17 3.4E-22 139.9 10.4 187 13-202 299-537 (585)
77 PRK03619 phosphoribosylformylg 99.7 9.5E-17 2.1E-21 127.9 12.6 171 13-198 1-202 (219)
78 PLN02832 glutamine amidotransf 99.6 1.6E-14 3.4E-19 116.3 16.1 82 12-106 1-89 (248)
79 KOG1559 Gamma-glutamyl hydrola 99.6 8.9E-16 1.9E-20 120.6 8.4 159 42-203 90-279 (340)
80 PRK13526 glutamine amidotransf 99.6 7.9E-14 1.7E-18 106.9 14.6 154 13-196 3-168 (179)
81 KOG0623 Glutamine amidotransfe 99.6 8.5E-15 1.8E-19 120.3 9.2 165 13-197 2-195 (541)
82 cd01740 GATase1_FGAR_AT Type 1 99.4 3.5E-12 7.5E-17 102.9 13.5 175 16-200 2-220 (238)
83 PRK01175 phosphoribosylformylg 99.3 4.9E-11 1.1E-15 97.2 13.1 177 12-199 3-232 (261)
84 COG0311 PDX2 Predicted glutami 99.2 8.3E-10 1.8E-14 83.9 14.6 158 13-197 1-179 (194)
85 COG0047 PurL Phosphoribosylfor 99.2 6.1E-10 1.3E-14 87.4 13.4 174 11-197 1-211 (231)
86 PF13507 GATase_5: CobB/CobQ-l 99.0 4.9E-09 1.1E-13 85.4 11.4 180 12-200 1-234 (259)
87 PF01174 SNO: SNO glutamine am 99.0 3.5E-09 7.7E-14 81.2 9.7 143 30-197 13-174 (188)
88 PF04204 HTS: Homoserine O-suc 98.9 5.4E-09 1.2E-13 86.0 8.9 139 55-197 91-240 (298)
89 cd03131 GATase1_HTS Type 1 glu 98.9 4.5E-09 9.8E-14 80.6 6.7 107 57-167 57-174 (175)
90 TIGR01001 metA homoserine O-su 98.7 9.9E-08 2.1E-12 78.2 9.7 175 12-197 35-240 (300)
91 TIGR01735 FGAM_synt phosphorib 98.6 4E-07 8.7E-12 88.4 12.2 183 10-201 1053-1286(1310)
92 cd01750 GATase1_CobQ Type 1 gl 98.6 8.4E-08 1.8E-12 75.1 5.7 81 15-107 1-90 (194)
93 TIGR01857 FGAM-synthase phosph 98.6 2.2E-06 4.7E-11 82.6 14.9 179 11-198 976-1218(1239)
94 PLN03206 phosphoribosylformylg 98.5 1.8E-06 3.9E-11 83.7 13.2 179 11-200 1036-1277(1307)
95 PRK05297 phosphoribosylformylg 98.5 3.1E-06 6.8E-11 82.5 14.1 179 11-201 1034-1265(1290)
96 cd03130 GATase1_CobB Type 1 gl 98.4 5.5E-06 1.2E-10 65.0 10.9 67 30-106 18-92 (198)
97 PHA03366 FGAM-synthase; Provis 98.0 0.0001 2.3E-09 72.1 13.5 87 11-105 1027-1133(1304)
98 KOG3210 Imidazoleglycerol-phos 98.0 0.00032 6.9E-09 53.0 12.0 91 10-108 9-110 (226)
99 TIGR01739 tegu_FGAM_synt herpe 97.9 0.00018 4E-09 70.0 13.3 87 11-105 928-1034(1202)
100 PRK06278 cobyrinic acid a,c-di 97.9 3E-05 6.4E-10 68.5 7.1 76 14-106 2-82 (476)
101 cd01653 GATase1 Type 1 glutami 97.8 0.00011 2.3E-09 50.2 6.5 71 26-102 15-92 (115)
102 PRK00784 cobyric acid synthase 97.7 5.3E-05 1.1E-09 67.4 4.9 82 12-106 251-342 (488)
103 PRK11780 isoprenoid biosynthes 97.7 0.00041 8.8E-09 55.3 9.3 50 57-106 80-145 (217)
104 COG1897 MetA Homoserine trans- 97.6 0.00032 7E-09 56.3 8.1 140 54-197 91-241 (307)
105 PF07685 GATase_3: CobB/CobQ-l 97.6 0.00039 8.4E-09 52.6 8.0 46 62-107 7-60 (158)
106 cd03128 GAT_1 Type 1 glutamine 97.5 0.00023 4.9E-09 46.4 4.8 71 26-102 15-92 (92)
107 TIGR00379 cobB cobyrinic acid 97.5 0.0011 2.3E-08 58.5 10.4 83 13-106 245-338 (449)
108 PRK01077 cobyrinic acid a,c-di 97.4 0.00048 1E-08 60.7 6.7 83 13-106 246-339 (451)
109 cd03169 GATase1_PfpI_1 Type 1 97.3 0.0014 3.1E-08 50.4 7.7 44 62-105 76-124 (180)
110 TIGR01382 PfpI intracellular p 97.0 0.0039 8.5E-08 47.1 7.3 44 62-105 60-108 (166)
111 COG3442 Predicted glutamine am 97.0 0.0045 9.8E-08 48.8 7.6 146 28-191 26-197 (250)
112 cd03146 GAT1_Peptidase_E Type 96.9 0.0022 4.7E-08 50.9 5.7 87 10-105 29-130 (212)
113 cd03134 GATase1_PfpI_like A ty 96.9 0.0068 1.5E-07 45.7 7.8 44 62-105 62-110 (165)
114 PRK13896 cobyrinic acid a,c-di 96.8 0.014 3E-07 51.2 10.5 45 62-106 274-325 (433)
115 cd03133 GATase1_ES1 Type 1 glu 96.8 0.0055 1.2E-07 48.6 7.3 52 56-107 76-143 (213)
116 cd03132 GATase1_catalase Type 96.8 0.0066 1.4E-07 44.7 7.4 87 13-105 2-111 (142)
117 KOG1907 Phosphoribosylformylgl 96.6 0.025 5.5E-07 52.9 10.4 182 10-200 1056-1290(1320)
118 cd03147 GATase1_Ydr533c_like T 96.5 0.0087 1.9E-07 48.1 6.6 45 61-105 93-143 (231)
119 PRK11574 oxidative-stress-resi 96.5 0.029 6.4E-07 43.6 9.2 50 55-104 59-114 (196)
120 COG0693 ThiJ Putative intracel 96.1 0.024 5.3E-07 43.7 7.1 45 62-106 66-116 (188)
121 PRK05282 (alpha)-aspartyl dipe 96.1 0.025 5.5E-07 45.5 6.9 88 12-107 31-131 (233)
122 TIGR00313 cobQ cobyric acid sy 96.0 0.0042 9.1E-08 55.2 2.2 45 62-106 284-336 (475)
123 COG1492 CobQ Cobyric acid synt 95.6 0.017 3.7E-07 50.9 4.4 59 42-106 276-342 (486)
124 PRK04155 chaperone protein Hch 95.6 0.052 1.1E-06 45.1 7.0 45 61-105 146-196 (287)
125 PRK11249 katE hydroperoxidase 95.4 0.046 1E-06 50.9 6.7 88 12-105 597-707 (752)
126 PF01965 DJ-1_PfpI: DJ-1/PfpI 95.3 0.0078 1.7E-07 44.7 1.3 53 53-105 28-87 (147)
127 cd03140 GATase1_PfpI_3 Type 1 95.3 0.033 7.1E-07 42.3 4.6 44 62-105 60-107 (170)
128 PF09825 BPL_N: Biotin-protein 95.3 1 2.3E-05 38.7 14.1 128 62-196 49-218 (367)
129 cd03148 GATase1_EcHsp31_like T 95.2 0.092 2E-06 42.2 7.3 44 62-105 96-145 (232)
130 cd03135 GATase1_DJ-1 Type 1 gl 94.9 0.063 1.4E-06 40.1 5.1 44 62-105 60-109 (163)
131 cd03129 GAT1_Peptidase_E_like 94.9 0.19 4.1E-06 39.6 8.0 87 11-105 28-130 (210)
132 cd03141 GATase1_Hsp31_like Typ 94.8 0.035 7.6E-07 44.2 3.8 44 62-105 90-139 (221)
133 COG1797 CobB Cobyrinic acid a, 94.4 0.59 1.3E-05 40.9 10.4 128 13-155 246-399 (451)
134 PRK05568 flavodoxin; Provision 94.0 1 2.3E-05 32.8 9.9 55 13-72 2-57 (142)
135 cd03137 GATase1_AraC_1 AraC tr 93.7 0.13 2.7E-06 39.5 4.7 44 62-105 64-112 (187)
136 PRK11104 hemG protoporphyrinog 93.6 0.57 1.2E-05 36.0 8.2 79 14-98 2-87 (177)
137 cd03144 GATase1_ScBLP_like Typ 93.5 0.26 5.7E-06 35.1 5.7 39 62-102 44-90 (114)
138 TIGR01383 not_thiJ DJ-1 family 93.3 0.13 2.8E-06 39.1 4.1 44 62-105 63-112 (179)
139 PF06283 ThuA: Trehalose utili 92.6 2.8 6.1E-05 33.0 11.0 143 14-170 1-161 (217)
140 PRK05569 flavodoxin; Provision 92.5 0.9 1.9E-05 33.1 7.5 55 13-72 2-57 (141)
141 PF06490 FleQ: Flagellar regul 92.4 0.32 7E-06 34.3 4.8 79 14-101 1-79 (109)
142 cd00886 MogA_MoaB MogA_MoaB fa 92.4 1.2 2.6E-05 33.3 8.2 60 21-87 18-85 (152)
143 cd03138 GATase1_AraC_2 AraC tr 92.4 0.24 5.2E-06 38.3 4.5 44 62-105 69-120 (195)
144 TIGR02667 moaB_proteo molybden 92.1 1.5 3.2E-05 33.3 8.4 69 12-87 4-87 (163)
145 PF00072 Response_reg: Respons 91.9 0.93 2E-05 30.9 6.7 74 15-95 1-75 (112)
146 cd03139 GATase1_PfpI_2 Type 1 91.6 0.33 7.2E-06 36.9 4.5 44 62-105 62-110 (183)
147 PF13278 DUF4066: Putative ami 90.4 0.32 7E-06 36.5 3.4 44 62-105 61-109 (166)
148 KOG2764 Putative transcription 89.5 1.5 3.2E-05 35.2 6.3 39 61-99 66-110 (247)
149 cd03136 GATase1_AraC_ArgR_like 89.1 0.7 1.5E-05 35.3 4.4 44 62-105 64-111 (185)
150 PRK06756 flavodoxin; Provision 88.8 7.1 0.00015 28.6 9.6 78 13-95 2-87 (148)
151 smart00852 MoCF_biosynth Proba 88.6 2.5 5.4E-05 30.6 6.9 59 22-88 17-82 (135)
152 TIGR02069 cyanophycinase cyano 87.8 2.5 5.4E-05 34.4 6.9 93 6-104 22-131 (250)
153 PRK03673 hypothetical protein; 87.0 4.6 9.9E-05 35.2 8.4 47 22-74 20-72 (396)
154 cd03145 GAT1_cyanophycinase Ty 86.9 3.4 7.4E-05 32.7 7.1 89 8-104 25-132 (217)
155 PRK14690 molybdopterin biosynt 86.5 4.8 0.0001 35.3 8.4 69 12-87 193-283 (419)
156 COG0303 MoeA Molybdopterin bio 86.3 2.5 5.4E-05 36.9 6.5 68 12-86 176-265 (404)
157 PRK14497 putative molybdopteri 85.2 5.8 0.00013 36.0 8.5 69 12-87 179-269 (546)
158 PRK09393 ftrA transcriptional 85.2 1.7 3.7E-05 36.4 4.9 44 62-105 75-122 (322)
159 PRK09468 ompR osmolarity respo 85.0 13 0.00028 29.0 9.7 77 11-95 4-81 (239)
160 PRK05452 anaerobic nitric oxid 84.6 5 0.00011 35.9 7.8 61 11-72 250-313 (479)
161 COG2185 Sbm Methylmalonyl-CoA 84.5 3.7 8E-05 30.5 5.7 79 11-96 11-99 (143)
162 PRK10680 molybdopterin biosynt 84.4 5.3 0.00012 35.0 7.7 67 12-85 177-265 (411)
163 cd00758 MoCF_BD MoCF_BD: molyb 84.3 6.4 0.00014 28.5 7.0 60 22-88 18-83 (133)
164 COG1440 CelA Phosphotransferas 84.2 5.9 0.00013 27.6 6.3 56 12-70 1-56 (102)
165 PRK01215 competence damage-ind 84.2 6 0.00013 32.5 7.5 69 12-87 3-86 (264)
166 PRK03767 NAD(P)H:quinone oxido 83.7 5.5 0.00012 31.0 6.9 37 13-50 2-39 (200)
167 PF00994 MoCF_biosynth: Probab 83.6 5.4 0.00012 29.2 6.5 60 22-88 16-81 (144)
168 TIGR00177 molyb_syn molybdenum 83.5 5.9 0.00013 29.2 6.7 61 22-89 26-92 (144)
169 PRK11921 metallo-beta-lactamas 83.3 5.6 0.00012 34.5 7.4 61 11-72 246-309 (394)
170 PF03698 UPF0180: Uncharacteri 83.3 2 4.2E-05 28.7 3.5 47 12-74 1-47 (80)
171 COG1058 CinA Predicted nucleot 83.2 9.4 0.0002 31.2 8.1 50 22-77 20-75 (255)
172 cd00885 cinA Competence-damage 82.4 9.5 0.00021 29.0 7.6 59 22-87 18-82 (170)
173 PRK09267 flavodoxin FldA; Vali 81.9 17 0.00038 27.2 8.9 51 13-69 2-53 (169)
174 PF03575 Peptidase_S51: Peptid 81.7 2.4 5.1E-05 31.6 3.9 65 25-95 2-73 (154)
175 COG3340 PepE Peptidase E [Amin 81.2 6.7 0.00014 31.2 6.3 77 12-95 32-122 (224)
176 cd02067 B12-binding B12 bindin 81.1 7.9 0.00017 27.2 6.4 67 25-98 16-88 (119)
177 PF10087 DUF2325: Uncharacteri 81.1 15 0.00032 25.0 8.0 83 14-106 1-93 (97)
178 PRK04539 ppnK inorganic polyph 80.7 16 0.00034 30.6 8.8 75 8-95 1-96 (296)
179 PRK01372 ddl D-alanine--D-alan 80.6 16 0.00035 30.0 9.0 53 11-69 3-63 (304)
180 PRK09417 mogA molybdenum cofac 80.5 12 0.00025 29.3 7.5 67 22-95 22-99 (193)
181 PRK10816 DNA-binding transcrip 79.4 24 0.00052 27.0 9.2 74 14-95 2-76 (223)
182 PRK11083 DNA-binding response 78.9 17 0.00036 27.7 8.2 76 12-95 3-79 (228)
183 PRK06703 flavodoxin; Provision 78.9 10 0.00022 27.9 6.5 52 13-68 2-54 (151)
184 PRK14498 putative molybdopteri 78.2 13 0.00029 34.3 8.4 56 12-73 186-263 (633)
185 cd00887 MoeA MoeA family. Memb 78.0 14 0.0003 32.1 8.1 69 12-87 168-258 (394)
186 PRK03094 hypothetical protein; 77.8 4.7 0.0001 26.8 3.8 47 12-74 1-47 (80)
187 PRK09590 celB cellobiose phosp 77.7 13 0.00029 25.9 6.4 57 12-70 1-58 (104)
188 TIGR00200 cinA_nterm competenc 77.5 16 0.00036 32.0 8.3 46 22-73 19-70 (413)
189 cd06292 PBP1_LacI_like_10 Liga 77.2 17 0.00038 28.8 8.0 60 28-95 21-87 (273)
190 COG4090 Uncharacterized protei 76.8 4.2 9E-05 29.7 3.7 43 62-107 85-132 (154)
191 PRK14491 putative bifunctional 76.5 15 0.00032 33.9 8.1 69 12-87 367-457 (597)
192 PRK03378 ppnK inorganic polyph 76.1 19 0.00041 30.0 8.0 75 8-95 1-91 (292)
193 COG4635 HemG Flavodoxin [Energ 76.1 6.9 0.00015 29.7 4.8 51 14-68 2-53 (175)
194 PRK02155 ppnK NAD(+)/NADH kina 75.8 28 0.00062 28.9 9.0 73 10-95 3-91 (291)
195 PRK10336 DNA-binding transcrip 75.8 20 0.00044 27.1 7.8 74 14-95 2-76 (219)
196 PF13380 CoA_binding_2: CoA bi 75.2 26 0.00057 24.7 8.0 32 13-50 1-35 (116)
197 TIGR00853 pts-lac PTS system, 74.3 19 0.00041 24.6 6.4 54 12-70 3-58 (95)
198 cd03522 MoeA_like MoeA_like. T 74.2 27 0.00058 29.5 8.4 70 12-88 159-244 (312)
199 PRK03670 competence damage-ind 74.0 31 0.00067 28.1 8.6 47 22-74 19-72 (252)
200 PRK09836 DNA-binding transcrip 73.7 25 0.00054 27.0 7.9 74 14-95 2-76 (227)
201 PRK14077 pnk inorganic polypho 73.6 27 0.00058 29.1 8.3 79 4-95 2-92 (287)
202 KOG1467 Translation initiation 73.4 15 0.00032 32.8 6.8 75 12-96 385-467 (556)
203 TIGR03787 marine_sort_RR prote 73.4 26 0.00056 26.8 7.9 77 13-95 1-78 (227)
204 PRK10365 transcriptional regul 73.0 26 0.00057 30.4 8.6 80 8-95 1-81 (441)
205 PRK00549 competence damage-ind 72.9 26 0.00057 30.7 8.5 47 22-74 19-71 (414)
206 PRK15029 arginine decarboxylas 72.9 17 0.00036 34.5 7.6 74 14-95 2-89 (755)
207 CHL00148 orf27 Ycf27; Reviewed 72.9 13 0.00029 28.7 6.2 77 10-95 4-81 (240)
208 PRK06242 flavodoxin; Provision 72.6 14 0.0003 26.9 5.8 72 14-95 2-78 (150)
209 PRK10161 transcriptional regul 72.3 12 0.00026 28.8 5.8 76 12-95 2-80 (229)
210 PRK07308 flavodoxin; Validated 72.2 22 0.00048 25.9 6.8 51 14-68 3-54 (146)
211 COG2204 AtoC Response regulato 71.7 21 0.00045 31.8 7.5 86 11-104 3-90 (464)
212 TIGR02154 PhoB phosphate regul 71.6 14 0.0003 28.1 5.9 76 12-95 2-80 (226)
213 PRK12359 flavodoxin FldB; Prov 71.6 17 0.00038 27.7 6.3 48 14-68 2-51 (172)
214 TIGR01755 flav_wrbA NAD(P)H:qu 70.3 21 0.00045 27.8 6.6 36 14-50 2-38 (197)
215 PRK10643 DNA-binding transcrip 69.9 33 0.00072 25.9 7.8 74 14-95 2-76 (222)
216 PRK09191 two-component respons 69.9 30 0.00065 27.4 7.7 78 9-95 134-214 (261)
217 COG0716 FldA Flavodoxins [Ener 69.1 43 0.00094 24.6 8.2 73 12-88 1-75 (151)
218 PRK09390 fixJ response regulat 68.7 42 0.00091 24.6 7.9 76 12-95 3-79 (202)
219 PRK02261 methylaspartate mutas 68.7 35 0.00076 24.9 7.1 77 13-96 4-90 (137)
220 TIGR01754 flav_RNR ribonucleot 68.3 38 0.00083 24.5 7.4 78 14-95 2-85 (140)
221 TIGR01753 flav_short flavodoxi 68.1 40 0.00087 23.9 9.8 47 19-69 6-52 (140)
222 cd06284 PBP1_LacI_like_6 Ligan 68.1 29 0.00062 27.3 7.2 29 42-71 29-64 (267)
223 COG0745 OmpR Response regulato 68.1 16 0.00034 29.3 5.6 74 13-95 1-76 (229)
224 PF13407 Peripla_BP_4: Peripla 67.8 37 0.00081 26.6 7.8 66 22-95 10-84 (257)
225 cd05565 PTS_IIB_lactose PTS_II 67.8 23 0.00051 24.4 5.7 54 14-70 2-55 (99)
226 PRK10766 DNA-binding transcrip 67.6 19 0.00041 27.5 5.9 75 12-95 2-77 (221)
227 PRK13856 two-component respons 66.7 18 0.00039 28.3 5.7 74 13-95 2-76 (241)
228 PRK10701 DNA-binding transcrip 66.2 18 0.0004 28.1 5.7 51 12-68 1-51 (240)
229 TIGR00640 acid_CoA_mut_C methy 66.0 31 0.00067 25.1 6.4 78 12-96 2-89 (132)
230 COG1609 PurR Transcriptional r 65.9 35 0.00077 28.7 7.6 37 27-70 79-122 (333)
231 smart00448 REC cheY-homologous 65.8 18 0.00039 19.0 5.5 49 14-68 2-50 (55)
232 PRK09271 flavodoxin; Provision 65.5 54 0.0012 24.4 8.0 54 14-69 2-58 (160)
233 PRK03708 ppnK inorganic polyph 64.6 33 0.00072 28.3 7.0 71 13-95 1-84 (277)
234 PRK13054 lipid kinase; Reviewe 64.0 33 0.0007 28.4 7.0 59 11-75 2-69 (300)
235 PRK10529 DNA-binding transcrip 63.0 24 0.00052 27.0 5.7 75 12-95 1-76 (225)
236 PRK14569 D-alanyl-alanine synt 62.6 73 0.0016 26.3 8.8 51 12-68 3-62 (296)
237 PRK06849 hypothetical protein; 62.5 49 0.0011 28.4 8.0 54 12-72 4-57 (389)
238 COG0426 FpaA Uncharacterized f 62.4 81 0.0018 27.5 9.1 56 14-72 248-306 (388)
239 PF13941 MutL: MutL protein 62.3 69 0.0015 28.6 8.9 84 12-100 76-164 (457)
240 PF00532 Peripla_BP_1: Peripla 62.3 70 0.0015 26.1 8.6 56 14-71 3-65 (279)
241 PF02601 Exonuc_VII_L: Exonucl 62.1 36 0.00079 28.4 7.0 85 12-100 14-117 (319)
242 PLN03029 type-a response regul 62.0 54 0.0012 25.8 7.6 33 10-48 6-38 (222)
243 cd06299 PBP1_LacI_like_13 Liga 62.0 67 0.0014 25.2 8.3 38 27-71 20-64 (265)
244 PF09075 STb_secrete: Heat-sta 61.9 2.7 5.8E-05 23.9 0.0 12 96-107 36-47 (48)
245 cd02065 B12-binding_like B12 b 61.6 36 0.00079 23.6 6.0 42 25-73 16-61 (125)
246 cd02070 corrinoid_protein_B12- 61.5 62 0.0013 25.1 7.8 93 12-111 82-188 (201)
247 PRK12833 acetyl-CoA carboxylas 61.4 36 0.00078 30.2 7.1 35 8-49 1-35 (467)
248 cd05564 PTS_IIB_chitobiose_lic 61.2 43 0.00093 22.7 6.0 72 15-98 2-78 (96)
249 cd06305 PBP1_methylthioribose_ 60.4 74 0.0016 25.0 8.3 29 42-71 29-64 (273)
250 KOG4435 Predicted lipid kinase 59.9 15 0.00032 32.1 4.2 33 42-75 92-129 (535)
251 PRK15479 transcriptional regul 59.5 73 0.0016 23.9 8.1 74 14-95 2-76 (221)
252 PRK13435 response regulator; P 59.1 33 0.00071 24.4 5.5 52 12-69 5-57 (145)
253 PRK03372 ppnK inorganic polyph 59.0 73 0.0016 26.8 8.1 71 12-95 5-100 (306)
254 cd06295 PBP1_CelR Ligand bindi 58.8 41 0.00088 26.7 6.5 38 28-71 32-73 (275)
255 PRK11361 acetoacetate metaboli 58.7 65 0.0014 28.1 8.2 76 12-95 4-80 (457)
256 PRK09483 response regulator; P 58.4 57 0.0012 24.6 7.1 77 12-95 1-79 (217)
257 PRK00170 azoreductase; Reviewe 58.4 66 0.0014 24.6 7.5 38 12-49 1-42 (201)
258 COG1568 Predicted methyltransf 58.2 25 0.00054 29.4 5.0 74 11-99 174-255 (354)
259 COG3967 DltE Short-chain dehyd 58.1 47 0.001 26.6 6.3 91 8-109 1-98 (245)
260 cd01422 MGS Methylglyoxal synt 57.3 59 0.0013 22.9 6.4 55 42-97 45-108 (115)
261 cd06321 PBP1_ABC_sugar_binding 57.3 86 0.0019 24.7 8.2 50 20-70 9-65 (271)
262 PRK11173 two-component respons 57.0 34 0.00074 26.5 5.7 74 13-95 4-78 (237)
263 cd01080 NAD_bind_m-THF_DH_Cycl 56.8 53 0.0011 24.9 6.4 53 12-71 44-96 (168)
264 PRK05395 3-dehydroquinate dehy 56.8 69 0.0015 23.9 6.7 29 42-72 43-77 (146)
265 PRK02645 ppnK inorganic polyph 56.7 56 0.0012 27.3 7.1 28 62-95 57-85 (305)
266 PRK11517 transcriptional regul 56.4 36 0.00078 25.8 5.7 50 14-69 2-51 (223)
267 PRK09958 DNA-binding transcrip 56.1 76 0.0016 23.6 7.4 75 13-95 1-77 (204)
268 TIGR02990 ectoine_eutA ectoine 56.1 76 0.0017 25.6 7.6 72 12-95 120-210 (239)
269 cd06318 PBP1_ABC_sugar_binding 56.0 48 0.001 26.4 6.5 28 42-70 29-63 (282)
270 TIGR01319 glmL_fam conserved h 55.7 87 0.0019 28.0 8.3 85 12-101 72-161 (463)
271 PRK15115 response regulator Gl 55.1 94 0.002 27.0 8.6 76 12-95 5-81 (444)
272 PF12724 Flavodoxin_5: Flavodo 54.9 29 0.00062 25.3 4.6 71 19-95 5-79 (143)
273 PRK10610 chemotaxis regulatory 54.9 53 0.0011 21.5 5.8 55 9-69 2-57 (129)
274 cd01574 PBP1_LacI Ligand-bindi 54.7 90 0.0019 24.4 7.9 38 28-71 21-65 (264)
275 cd06279 PBP1_LacI_like_3 Ligan 53.9 59 0.0013 26.0 6.8 30 42-71 34-65 (283)
276 PF12641 Flavodoxin_3: Flavodo 53.9 64 0.0014 24.3 6.4 68 17-95 3-71 (160)
277 PF02310 B12-binding: B12 bind 53.8 48 0.001 22.9 5.5 65 25-96 17-86 (121)
278 PRK10499 PTS system N,N'-diace 53.8 57 0.0012 22.7 5.7 55 13-70 4-58 (106)
279 PRK11303 DNA-binding transcrip 53.8 1.1E+02 0.0023 25.1 8.4 57 13-71 62-126 (328)
280 PRK10710 DNA-binding transcrip 53.8 51 0.0011 25.3 6.2 75 12-95 10-85 (240)
281 PRK10841 hybrid sensory kinase 53.1 72 0.0016 31.0 8.1 79 12-98 801-881 (924)
282 PRK02649 ppnK inorganic polyph 53.1 1.1E+02 0.0024 25.7 8.3 28 62-95 68-96 (305)
283 PRK10310 PTS system galactitol 53.1 69 0.0015 21.7 6.9 52 13-70 3-58 (94)
284 TIGR00147 lipid kinase, YegS/R 52.7 63 0.0014 26.5 6.8 41 28-74 24-69 (293)
285 cd06312 PBP1_ABC_sugar_binding 52.4 1.1E+02 0.0025 24.1 8.2 49 21-71 11-66 (271)
286 COG1597 LCB5 Sphingosine kinas 52.3 1.4E+02 0.003 24.9 9.4 63 42-110 33-105 (301)
287 PRK10955 DNA-binding transcrip 52.3 43 0.00094 25.6 5.6 50 12-68 1-50 (232)
288 PRK00421 murC UDP-N-acetylmura 52.2 1.4E+02 0.0029 26.4 9.2 55 12-72 7-76 (461)
289 PF03358 FMN_red: NADPH-depend 52.0 60 0.0013 23.5 6.0 37 13-51 1-40 (152)
290 cd06310 PBP1_ABC_sugar_binding 51.9 1.2E+02 0.0025 23.9 8.5 30 42-71 29-66 (273)
291 COG0784 CheY FOG: CheY-like re 51.9 75 0.0016 21.7 6.4 84 11-102 4-91 (130)
292 PF02302 PTS_IIB: PTS system, 51.7 65 0.0014 21.0 5.7 29 42-71 28-56 (90)
293 PRK01390 murD UDP-N-acetylmura 51.6 1.1E+02 0.0025 26.8 8.6 55 12-73 9-76 (460)
294 TIGR00237 xseA exodeoxyribonuc 51.6 97 0.0021 27.3 8.1 85 12-100 129-229 (432)
295 cd06533 Glyco_transf_WecG_TagA 51.4 98 0.0021 23.4 7.2 95 10-114 44-146 (171)
296 PRK10014 DNA-binding transcrip 51.3 1.2E+02 0.0026 25.0 8.4 30 42-72 94-130 (342)
297 TIGR01387 cztR_silR_copR heavy 51.2 1E+02 0.0022 23.1 8.5 73 15-95 1-74 (218)
298 cd01539 PBP1_GGBP Periplasmic 51.1 1.3E+02 0.0028 24.5 8.5 52 20-71 9-66 (303)
299 cd06281 PBP1_LacI_like_5 Ligan 50.5 1.2E+02 0.0027 23.8 8.1 38 28-71 21-64 (269)
300 PRK13837 two-component VirA-li 50.4 87 0.0019 29.9 8.2 77 12-98 697-777 (828)
301 PRK09004 FMN-binding protein M 50.3 84 0.0018 23.1 6.5 51 12-68 1-52 (146)
302 cd06296 PBP1_CatR_like Ligand- 50.0 1E+02 0.0022 24.1 7.5 38 28-71 21-64 (270)
303 TIGR01752 flav_long flavodoxin 49.9 1.1E+02 0.0023 22.9 9.0 50 15-70 2-52 (167)
304 PF00455 DeoRC: DeoR C termina 49.4 71 0.0015 23.9 6.1 80 13-100 20-104 (161)
305 PRK01911 ppnK inorganic polyph 49.2 1.5E+02 0.0032 24.7 8.4 28 62-95 64-92 (292)
306 cd06301 PBP1_rhizopine_binding 49.1 1.3E+02 0.0028 23.6 8.2 29 42-71 30-65 (272)
307 PF02882 THF_DHG_CYH_C: Tetrah 48.8 1.1E+02 0.0025 23.0 7.1 53 12-71 36-88 (160)
308 cd06314 PBP1_tmGBP Periplasmic 48.6 95 0.0021 24.5 7.2 30 42-71 28-64 (271)
309 PRK10923 glnG nitrogen regulat 48.3 1.2E+02 0.0026 26.6 8.3 75 13-95 4-79 (469)
310 cd01575 PBP1_GntR Ligand-bindi 48.1 1.1E+02 0.0024 23.9 7.4 30 42-71 29-64 (268)
311 cd02071 MM_CoA_mut_B12_BD meth 47.9 96 0.0021 21.9 6.3 41 25-72 16-60 (122)
312 PRK13055 putative lipid kinase 47.9 65 0.0014 27.2 6.3 57 12-74 2-71 (334)
313 cd05212 NAD_bind_m-THF_DH_Cycl 47.8 1.1E+02 0.0024 22.5 6.7 53 12-71 28-80 (140)
314 COG2201 CheB Chemotaxis respon 47.7 1E+02 0.0022 26.5 7.3 51 12-68 1-53 (350)
315 COG0521 MoaB Molybdopterin bio 47.6 1.3E+02 0.0027 23.1 7.4 44 25-74 29-79 (169)
316 PRK03604 moaC bifunctional mol 47.6 54 0.0012 27.7 5.6 60 22-88 174-240 (312)
317 PRK13558 bacterio-opsin activa 47.2 1E+02 0.0023 28.3 8.0 75 13-95 8-83 (665)
318 cd01541 PBP1_AraR Ligand-bindi 46.2 1.1E+02 0.0024 24.1 7.2 32 42-73 29-66 (273)
319 PRK13015 3-dehydroquinate dehy 46.0 1.2E+02 0.0027 22.5 6.7 42 27-72 30-77 (146)
320 PRK14571 D-alanyl-alanine synt 45.7 1.7E+02 0.0036 24.0 8.6 73 14-95 2-83 (299)
321 cd01540 PBP1_arabinose_binding 45.4 89 0.0019 24.9 6.6 30 42-71 29-63 (289)
322 PRK10653 D-ribose transporter 45.1 1.6E+02 0.0035 23.7 8.8 55 9-70 23-90 (295)
323 PRK04308 murD UDP-N-acetylmura 45.0 1.9E+02 0.0042 25.2 9.0 32 12-50 5-36 (445)
324 PLN02699 Bifunctional molybdop 45.0 88 0.0019 29.3 7.1 45 24-74 210-261 (659)
325 PRK11914 diacylglycerol kinase 44.9 58 0.0013 26.9 5.4 41 28-74 31-76 (306)
326 PLN02929 NADH kinase 44.8 76 0.0016 26.7 6.0 55 26-95 37-91 (301)
327 cd06309 PBP1_YtfQ_like Peripla 44.8 1.2E+02 0.0025 24.0 7.1 39 27-71 20-64 (273)
328 cd06272 PBP1_hexuronate_repres 44.6 1.2E+02 0.0026 23.7 7.1 30 42-71 29-60 (261)
329 PLN02493 probable peroxisomal 44.0 1.9E+02 0.004 25.1 8.4 83 25-114 212-308 (367)
330 PF00289 CPSase_L_chain: Carba 43.8 48 0.001 23.3 4.1 85 13-107 3-92 (110)
331 cd06319 PBP1_ABC_sugar_binding 43.7 1.1E+02 0.0024 24.0 6.9 29 42-71 29-64 (277)
332 PRK09581 pleD response regulat 43.4 65 0.0014 27.5 5.8 51 12-68 2-52 (457)
333 PRK15408 autoinducer 2-binding 43.3 1.3E+02 0.0028 25.3 7.4 73 12-95 23-109 (336)
334 PRK09461 ansA cytoplasmic aspa 43.3 1.1E+02 0.0024 25.9 7.0 34 62-95 233-268 (335)
335 PF14403 CP_ATPgrasp_2: Circul 43.1 36 0.00078 30.2 4.0 79 12-103 185-281 (445)
336 TIGR02417 fruct_sucro_rep D-fr 42.5 1.9E+02 0.0041 23.6 8.6 30 42-71 90-125 (327)
337 cd01545 PBP1_SalR Ligand-bindi 42.3 1.6E+02 0.0036 22.9 8.1 38 28-71 21-65 (270)
338 PF01220 DHquinase_II: Dehydro 42.0 1E+02 0.0022 22.8 5.6 42 27-72 29-76 (140)
339 COG2247 LytB Putative cell wal 41.8 79 0.0017 26.8 5.6 34 42-75 52-88 (337)
340 PLN02935 Bifunctional NADH kin 41.5 1.5E+02 0.0033 26.9 7.6 28 62-95 262-290 (508)
341 COG1184 GCD2 Translation initi 41.4 1.4E+02 0.003 25.1 7.0 73 14-96 147-227 (301)
342 COG4977 Transcriptional regula 41.4 60 0.0013 27.6 4.9 44 62-105 76-124 (328)
343 TIGR01501 MthylAspMutase methy 41.3 1.4E+02 0.003 21.8 7.2 73 19-98 12-90 (134)
344 cd07025 Peptidase_S66 LD-Carbo 40.8 1.1E+02 0.0023 25.3 6.4 64 12-95 192-261 (282)
345 TIGR02956 TMAO_torS TMAO reduc 40.7 1.3E+02 0.0029 28.9 7.9 75 13-95 703-781 (968)
346 COG1570 XseA Exonuclease VII, 40.5 1.5E+02 0.0034 26.3 7.4 85 12-100 135-235 (440)
347 PRK10430 DNA-binding transcrip 40.2 1.8E+02 0.0039 22.7 8.4 77 12-95 1-81 (239)
348 PRK14987 gluconate operon tran 40.1 2E+02 0.0043 23.6 8.0 29 42-70 93-127 (331)
349 cd06320 PBP1_allose_binding Pe 40.1 1.8E+02 0.004 22.8 8.8 30 42-71 29-66 (275)
350 PRK10355 xylF D-xylose transpo 39.0 1.5E+02 0.0033 24.7 7.2 57 12-71 25-90 (330)
351 PRK02006 murD UDP-N-acetylmura 38.5 2.7E+02 0.0058 24.8 9.0 31 12-49 7-37 (498)
352 PF00763 THF_DHG_CYH: Tetrahyd 38.5 1.4E+02 0.003 21.0 6.1 51 12-68 29-93 (117)
353 TIGR02370 pyl_corrinoid methyl 38.4 1.9E+02 0.004 22.4 7.9 93 12-111 84-190 (197)
354 cd06322 PBP1_ABC_sugar_binding 38.3 1.9E+02 0.0042 22.5 8.1 50 19-71 8-64 (267)
355 TIGR01818 ntrC nitrogen regula 38.3 1.6E+02 0.0034 25.8 7.4 48 15-68 1-48 (463)
356 COG5426 Uncharacterized membra 38.3 37 0.0008 26.7 3.0 37 28-72 37-79 (254)
357 PRK13557 histidine kinase; Pro 38.3 1.8E+02 0.0039 25.5 7.8 76 12-95 415-493 (540)
358 cd01542 PBP1_TreR_like Ligand- 38.1 1.9E+02 0.0041 22.4 7.4 29 42-71 29-64 (259)
359 cd06285 PBP1_LacI_like_7 Ligan 38.0 1.9E+02 0.0042 22.5 7.7 36 28-70 21-63 (265)
360 COG3155 ElbB Uncharacterized p 38.0 44 0.00096 25.5 3.2 50 62-111 85-150 (217)
361 cd02069 methionine_synthase_B1 37.9 1.8E+02 0.0038 23.0 6.9 78 12-96 88-174 (213)
362 PRK00286 xseA exodeoxyribonucl 37.7 1.8E+02 0.0038 25.6 7.6 85 12-100 135-234 (438)
363 PF02016 Peptidase_S66: LD-car 37.7 39 0.00085 27.9 3.3 68 12-99 192-268 (284)
364 COG1454 EutG Alcohol dehydroge 37.6 1.1E+02 0.0023 26.7 6.0 61 13-80 30-103 (377)
365 cd02072 Glm_B12_BD B12 binding 37.5 1.5E+02 0.0033 21.5 5.9 73 19-98 10-88 (128)
366 COG4607 CeuA ABC-type enteroch 37.2 77 0.0017 26.7 4.8 19 54-73 110-128 (320)
367 cd06273 PBP1_GntR_like_1 This 36.7 2E+02 0.0044 22.4 7.8 37 28-71 21-64 (268)
368 COG3706 PleD Response regulato 36.7 1.6E+02 0.0035 26.1 7.1 91 11-109 131-230 (435)
369 cd06280 PBP1_LacI_like_4 Ligan 36.3 1.2E+02 0.0026 23.8 5.9 30 42-71 29-64 (263)
370 COG0252 AnsB L-asparaginase/ar 36.3 1.2E+02 0.0027 26.0 6.1 34 61-95 253-287 (351)
371 PF11051 Mannosyl_trans3: Mann 36.2 21 0.00047 29.2 1.5 32 64-95 2-33 (271)
372 PRK11041 DNA-binding transcrip 36.1 1.3E+02 0.0029 24.2 6.3 54 12-71 35-100 (309)
373 PF04321 RmlD_sub_bind: RmlD s 36.0 75 0.0016 26.0 4.7 58 13-76 1-65 (286)
374 PRK13337 putative lipid kinase 35.8 1.5E+02 0.0032 24.5 6.5 42 28-75 24-70 (304)
375 PF03808 Glyco_tran_WecB: Glyc 35.5 1.9E+02 0.0042 21.7 7.3 96 9-114 45-148 (172)
376 cd06316 PBP1_ABC_sugar_binding 35.5 1.7E+02 0.0038 23.4 6.8 10 61-70 55-64 (294)
377 PLN02958 diacylglycerol kinase 35.4 98 0.0021 27.7 5.7 43 28-76 135-182 (481)
378 PRK08462 biotin carboxylase; V 35.3 1.4E+02 0.003 26.2 6.5 33 10-49 2-34 (445)
379 cd01538 PBP1_ABC_xylose_bindin 35.2 2.3E+02 0.0051 22.6 8.5 29 42-71 29-64 (288)
380 cd06287 PBP1_LacI_like_8 Ligan 35.2 1.8E+02 0.0039 23.1 6.9 38 27-71 28-65 (269)
381 PRK10703 DNA-binding transcrip 35.2 2.5E+02 0.0055 23.0 8.0 56 13-71 60-124 (341)
382 PRK01231 ppnK inorganic polyph 34.9 2.7E+02 0.0058 23.2 8.1 71 12-95 4-90 (295)
383 PRK07116 flavodoxin; Provision 34.9 1.9E+02 0.004 21.4 8.1 24 12-35 2-26 (160)
384 cd00532 MGS-like MGS-like doma 34.8 1.5E+02 0.0034 20.4 6.0 61 29-95 35-103 (112)
385 cd06302 PBP1_LsrB_Quorum_Sensi 34.7 2.4E+02 0.0053 22.7 8.9 28 42-70 29-64 (298)
386 cd06315 PBP1_ABC_sugar_binding 34.3 1.6E+02 0.0035 23.5 6.4 37 28-71 22-65 (280)
387 TIGR02955 TMAO_TorT TMAO reduc 34.0 2.5E+02 0.0054 22.6 8.5 29 42-70 29-65 (295)
388 cd06298 PBP1_CcpA_like Ligand- 33.7 2.3E+02 0.0049 22.0 7.4 30 42-71 29-64 (268)
389 PRK09959 hybrid sensory histid 33.6 1.8E+02 0.0038 29.0 7.6 79 12-98 958-1038(1197)
390 cd06300 PBP1_ABC_sugar_binding 33.6 2.3E+02 0.0051 22.2 7.8 11 61-71 59-69 (272)
391 PRK00861 putative lipid kinase 33.4 1.1E+02 0.0024 25.2 5.4 14 61-74 56-69 (300)
392 cd06306 PBP1_TorT-like TorT-li 33.4 2.4E+02 0.0052 22.2 8.4 30 42-71 29-66 (268)
393 TIGR00514 accC acetyl-CoA carb 33.2 1.8E+02 0.0038 25.6 6.9 33 11-50 1-33 (449)
394 PF03932 CutC: CutC family; I 32.8 2E+02 0.0043 22.6 6.4 58 41-98 113-178 (201)
395 TIGR01481 ccpA catabolite cont 32.7 2.7E+02 0.0059 22.6 8.0 57 13-71 60-124 (329)
396 PF09822 ABC_transp_aux: ABC-t 32.6 1.1E+02 0.0024 24.7 5.2 75 8-95 142-229 (271)
397 PRK10423 transcriptional repre 32.4 1.9E+02 0.0041 23.6 6.7 30 42-71 86-121 (327)
398 cd06297 PBP1_LacI_like_12 Liga 32.2 2.5E+02 0.0055 22.1 7.6 39 27-71 20-64 (269)
399 cd06290 PBP1_LacI_like_9 Ligan 32.1 2.4E+02 0.0053 21.9 7.6 29 42-71 29-64 (265)
400 cd06282 PBP1_GntR_like_2 Ligan 32.0 2.4E+02 0.0052 21.8 7.4 30 42-71 29-64 (266)
401 PRK10906 DNA-binding transcrip 31.9 1.4E+02 0.0031 24.1 5.7 79 13-100 92-176 (252)
402 cd02068 radical_SAM_B12_BD B12 31.7 99 0.0022 21.7 4.3 68 27-100 7-77 (127)
403 TIGR03682 arCOG04112 arCOG0411 31.6 2E+02 0.0044 24.1 6.7 33 42-74 242-274 (308)
404 PRK10360 DNA-binding transcrip 31.3 2.1E+02 0.0046 20.9 7.2 75 12-95 1-76 (196)
405 PLN02979 glycolate oxidase 31.3 3.5E+02 0.0076 23.5 8.8 85 25-114 211-307 (366)
406 PLN02204 diacylglycerol kinase 31.2 1.4E+02 0.003 27.7 5.9 43 28-76 182-232 (601)
407 PF13649 Methyltransf_25: Meth 31.1 1.2E+02 0.0027 20.0 4.5 68 13-87 25-92 (101)
408 PF05582 Peptidase_U57: YabG p 31.1 1.9E+02 0.0041 24.1 6.1 56 12-73 105-165 (287)
409 PRK13059 putative lipid kinase 31.0 1.8E+02 0.0039 24.0 6.2 42 28-75 24-69 (295)
410 PRK15347 two component system 30.9 1.2E+02 0.0026 29.0 5.8 78 13-98 691-774 (921)
411 COG0075 Serine-pyruvate aminot 30.8 1.6E+02 0.0034 25.7 6.0 51 12-69 80-138 (383)
412 COG3947 Response regulator con 30.8 78 0.0017 26.7 3.9 23 13-35 1-23 (361)
413 COG0655 WrbA Multimeric flavod 30.7 1.9E+02 0.0042 22.3 6.1 27 22-50 13-39 (207)
414 PLN02404 6,7-dimethyl-8-ribity 30.6 2.2E+02 0.0049 21.0 6.2 86 7-95 2-107 (141)
415 TIGR01082 murC UDP-N-acetylmur 30.6 3.7E+02 0.008 23.5 8.5 29 15-49 2-30 (448)
416 PRK10840 transcriptional regul 30.6 2.4E+02 0.0053 21.4 7.5 23 13-35 4-26 (216)
417 COG0429 Predicted hydrolase of 30.2 2.5E+02 0.0054 24.1 6.8 77 19-107 87-167 (345)
418 PRK14175 bifunctional 5,10-met 30.1 2.6E+02 0.0057 23.3 7.0 53 12-71 158-210 (286)
419 cd06329 PBP1_SBP_like_3 Peripl 30.0 3.2E+02 0.0069 22.6 9.4 81 12-95 143-231 (342)
420 TIGR02855 spore_yabG sporulati 30.0 1.6E+02 0.0035 24.4 5.5 56 12-73 104-164 (283)
421 TIGR00333 nrdI ribonucleoside- 29.9 1.6E+02 0.0035 21.2 5.0 59 22-89 4-62 (125)
422 PRK08105 flavodoxin; Provision 29.9 2.3E+02 0.0049 20.8 6.9 37 12-50 1-38 (149)
423 PRK14573 bifunctional D-alanyl 29.8 3.9E+02 0.0084 25.6 9.0 31 13-49 5-35 (809)
424 cd03332 LMO_FMN L-Lactate 2-mo 29.7 3.8E+02 0.0082 23.4 8.7 82 25-113 241-336 (383)
425 COG2242 CobL Precorrin-6B meth 29.6 2.5E+02 0.0054 21.9 6.3 52 12-71 58-111 (187)
426 KOG0538 Glycolate oxidase [Ene 29.5 3.3E+02 0.0072 23.2 7.3 84 23-112 209-305 (363)
427 PF01070 FMN_dh: FMN-dependent 29.4 3.7E+02 0.0079 23.1 8.1 71 42-114 225-309 (356)
428 PRK08591 acetyl-CoA carboxylas 29.3 1.8E+02 0.0039 25.4 6.3 31 11-48 1-31 (451)
429 PRK14194 bifunctional 5,10-met 29.2 2.2E+02 0.0048 23.9 6.4 53 12-71 159-211 (301)
430 KOG0068 D-3-phosphoglycerate d 29.0 3.5E+02 0.0075 23.5 7.4 49 9-68 3-53 (406)
431 cd06324 PBP1_ABC_sugar_binding 29.0 1.9E+02 0.004 23.5 6.0 30 42-71 30-67 (305)
432 PRK15399 lysine decarboxylase 28.8 2.6E+02 0.0057 26.5 7.4 70 14-95 2-80 (713)
433 PF10230 DUF2305: Uncharacteri 28.7 32 0.0007 28.0 1.4 36 64-99 4-40 (266)
434 PRK00141 murD UDP-N-acetylmura 28.7 4.1E+02 0.0088 23.6 8.4 31 12-49 15-45 (473)
435 cd06334 PBP1_ABC_ligand_bindin 28.5 3.5E+02 0.0077 22.6 8.9 87 12-107 140-240 (351)
436 cd00156 REC Signal receiver do 28.4 1.4E+02 0.0031 18.1 7.0 72 17-95 2-73 (113)
437 PRK10401 DNA-binding transcrip 28.4 2.1E+02 0.0046 23.6 6.4 53 13-71 60-124 (346)
438 PRK14176 bifunctional 5,10-met 28.3 2.6E+02 0.0056 23.4 6.6 53 12-71 164-216 (287)
439 COG0683 LivK ABC-type branched 28.3 3.7E+02 0.0079 22.7 9.0 90 13-107 149-248 (366)
440 PRK10434 srlR DNA-bindng trans 28.2 2E+02 0.0042 23.3 5.9 80 13-100 92-177 (256)
441 PRK11697 putative two-componen 28.1 1.5E+02 0.0033 22.9 5.1 24 12-35 1-24 (238)
442 cd06270 PBP1_GalS_like Ligand 27.9 2.2E+02 0.0049 22.2 6.2 38 28-71 21-64 (268)
443 COG1736 DPH2 Diphthamide synth 27.9 2E+02 0.0043 24.7 6.0 43 26-74 257-300 (347)
444 PRK10403 transcriptional regul 27.4 2.5E+02 0.0055 20.6 7.5 79 10-95 4-84 (215)
445 PRK11340 phosphodiesterase Yae 27.2 1E+02 0.0022 25.1 4.1 40 61-100 79-122 (271)
446 PTZ00286 6-phospho-1-fructokin 27.1 63 0.0014 28.9 3.0 47 58-104 172-233 (459)
447 PTZ00215 ribose 5-phosphate is 27.0 2.7E+02 0.0059 20.8 7.3 92 13-110 3-123 (151)
448 PLN02274 inosine-5'-monophosph 27.0 4.1E+02 0.0089 24.0 8.2 57 12-74 260-322 (505)
449 PRK06372 translation initiatio 26.9 3.5E+02 0.0075 22.1 7.0 74 13-96 110-191 (253)
450 PF01606 Arteri_env: Arterivir 26.8 10 0.00022 29.0 -1.7 12 184-195 118-129 (214)
451 TIGR02634 xylF D-xylose ABC tr 26.8 2.3E+02 0.005 23.0 6.2 38 27-70 19-62 (302)
452 PRK10427 putative PTS system f 26.6 2.4E+02 0.0051 20.0 6.0 57 13-73 4-68 (114)
453 PLN02778 3,5-epimerase/4-reduc 26.6 3.6E+02 0.0078 22.1 7.9 56 12-73 9-68 (298)
454 KOG1273 WD40 repeat protein [G 26.4 1.2E+02 0.0027 25.8 4.3 21 173-195 99-119 (405)
455 cd06313 PBP1_ABC_sugar_binding 26.4 2E+02 0.0043 22.8 5.7 28 42-70 29-63 (272)
456 cd01543 PBP1_XylR Ligand-bindi 26.4 3E+02 0.0064 21.5 6.7 29 42-70 29-58 (265)
457 PRK04148 hypothetical protein; 26.2 2.5E+02 0.0055 20.5 5.6 32 12-51 17-48 (134)
458 KOG2862 Alanine-glyoxylate ami 26.0 4.3E+02 0.0092 22.7 8.4 76 12-94 92-174 (385)
459 PRK13509 transcriptional repre 25.9 3.1E+02 0.0066 22.1 6.6 77 13-100 94-176 (251)
460 PTZ00068 60S ribosomal protein 25.9 2.4E+02 0.0052 22.3 5.7 36 12-50 2-37 (202)
461 PRK12361 hypothetical protein; 25.8 1.8E+02 0.0039 26.4 5.8 14 62-75 297-310 (547)
462 PRK08654 pyruvate carboxylase 25.7 2.7E+02 0.0058 25.1 6.8 30 12-48 2-31 (499)
463 PRK12767 carbamoyl phosphate s 25.6 3.8E+02 0.0082 22.0 8.1 33 12-50 1-33 (326)
464 PRK10651 transcriptional regul 25.6 2.8E+02 0.006 20.4 7.4 80 9-95 3-84 (216)
465 PRK09492 treR trehalose repres 25.4 2.8E+02 0.0061 22.4 6.5 37 28-70 84-126 (315)
466 COG1349 GlpR Transcriptional r 25.4 2.2E+02 0.0048 23.0 5.7 81 13-101 92-177 (253)
467 PF00781 DAGK_cat: Diacylglyce 25.2 1.6E+02 0.0034 20.8 4.3 73 27-111 19-105 (130)
468 PRK09526 lacI lac repressor; R 25.1 2.7E+02 0.0058 22.8 6.4 28 42-69 93-127 (342)
469 PRK11091 aerobic respiration c 25.1 1.6E+02 0.0034 27.7 5.5 76 12-95 525-604 (779)
470 PRK06830 diphosphate--fructose 25.1 77 0.0017 28.2 3.1 47 58-104 168-229 (443)
471 PRK09802 DNA-binding transcrip 25.1 1.9E+02 0.0041 23.6 5.3 79 13-100 107-191 (269)
472 PRK14178 bifunctional 5,10-met 25.0 2.5E+02 0.0053 23.4 5.9 53 12-71 152-204 (279)
473 PRK14177 bifunctional 5,10-met 25.0 3.1E+02 0.0067 22.9 6.5 60 3-68 24-97 (284)
474 COG3199 Predicted inorganic po 24.9 1.7E+02 0.0036 25.2 4.9 29 62-96 100-128 (355)
475 cd06275 PBP1_PurR Ligand-bindi 24.8 2.5E+02 0.0054 21.9 5.9 29 42-71 29-64 (269)
476 PRK14572 D-alanyl-alanine synt 24.7 4.3E+02 0.0092 22.3 7.7 32 12-49 1-40 (347)
477 PRK00742 chemotaxis-specific m 24.3 4.3E+02 0.0092 22.2 7.8 52 12-68 3-55 (354)
478 KOG3349 Predicted glycosyltran 24.3 2.4E+02 0.0053 21.4 5.2 45 42-98 62-108 (170)
479 cd06348 PBP1_ABC_ligand_bindin 24.3 4E+02 0.0087 21.9 8.1 81 13-98 137-226 (344)
480 PRK10046 dpiA two-component re 24.2 3.4E+02 0.0073 20.9 7.8 77 12-95 4-82 (225)
481 cd06323 PBP1_ribose_binding Pe 24.2 3.4E+02 0.0073 21.0 8.0 28 42-70 29-63 (268)
482 PF09897 DUF2124: Uncharacteri 24.1 19 0.00041 26.8 -0.7 80 11-97 18-119 (147)
483 PRK01710 murD UDP-N-acetylmura 24.0 2.8E+02 0.006 24.4 6.5 31 12-49 14-44 (458)
484 cd06276 PBP1_FucR_like Ligand- 24.0 2.2E+02 0.0048 22.3 5.5 39 27-71 19-61 (247)
485 cd06286 PBP1_CcpB_like Ligand- 23.9 2.7E+02 0.0058 21.6 5.9 30 42-71 29-64 (260)
486 PRK11466 hybrid sensory histid 23.9 3.6E+02 0.0077 25.8 7.7 80 12-99 681-763 (914)
487 COG0569 TrkA K+ transport syst 23.7 2.2E+02 0.0047 22.5 5.3 53 13-72 1-53 (225)
488 cd07062 Peptidase_S66_mccF_lik 23.7 2.3E+02 0.0049 23.7 5.6 65 11-95 217-286 (308)
489 PF03709 OKR_DC_1_N: Orn/Lys/A 23.7 1.2E+02 0.0026 21.2 3.4 65 25-95 6-71 (115)
490 cd06346 PBP1_ABC_ligand_bindin 23.6 4E+02 0.0087 21.6 7.9 79 12-95 137-222 (312)
491 PRK00561 ppnK inorganic polyph 23.6 3E+02 0.0065 22.5 6.1 59 14-95 2-61 (259)
492 PRK09701 D-allose transporter 23.4 4.1E+02 0.0089 21.6 8.7 58 12-71 24-91 (311)
493 PRK12480 D-lactate dehydrogena 23.2 3.1E+02 0.0068 23.1 6.4 52 12-70 1-53 (330)
494 cd06274 PBP1_FruR Ligand bindi 23.2 3E+02 0.0064 21.4 6.1 30 42-71 29-64 (264)
495 TIGR03151 enACPred_II putative 23.2 3.6E+02 0.0079 22.5 6.8 52 11-70 86-137 (307)
496 TIGR03521 GldG gliding-associa 23.2 2.5E+02 0.0053 25.7 6.1 80 7-95 178-266 (552)
497 PRK14619 NAD(P)H-dependent gly 23.0 3.9E+02 0.0085 22.0 6.9 52 10-69 2-54 (308)
498 cd06289 PBP1_MalI_like Ligand- 23.0 3.6E+02 0.0078 20.8 7.2 29 42-71 29-64 (268)
499 KOG0283 WD40 repeat-containing 22.9 86 0.0019 29.6 3.1 51 141-193 360-420 (712)
500 COG0287 TyrA Prephenate dehydr 22.8 3.6E+02 0.0079 22.3 6.6 34 11-51 2-35 (279)
No 1
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=9.8e-47 Score=287.11 Aligned_cols=177 Identities=48% Similarity=0.844 Sum_probs=160.5
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGISFRTVLELGPT 91 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~~~~~ 91 (203)
|+||++|||+|||++||+++++++ |+++.+++.+..+.++++..++|+||||||||.|.+.+...++|+++.++
T Consensus 1 ~~~IL~IDNyDSFtyNLv~yl~~l------g~~v~V~rnd~~~~~~~~~~~pd~iviSPGPG~P~d~G~~~~~i~~~~~~ 74 (191)
T COG0512 1 MMMILLIDNYDSFTYNLVQYLREL------GAEVTVVRNDDISLELIEALKPDAIVISPGPGTPKDAGISLELIRRFAGR 74 (191)
T ss_pred CceEEEEECccchHHHHHHHHHHc------CCceEEEECCccCHHHHhhcCCCEEEEcCCCCChHHcchHHHHHHHhcCC
Confidence 578999999999999999999999 99999999876777777777899999999999999999999999999888
Q ss_pred Ccee--ehhHHHHHHHhCCeeccccccccccc-eeEEEcccccccccccCCCCceEEeecccceeecCCCCCCCeEEEEE
Q 037843 92 MPLF--CMGLKCIGEALEGRLYVLLLVSCMGK-ALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAW 168 (203)
Q Consensus 92 ~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~-~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~ 168 (203)
+||| |||||.|++++||+|.+.. .+.||+ +.+.+.. +.+|++++++|.+.+|||..+.++++ |+.++++|+
T Consensus 75 ~PiLGVCLGHQai~~~fGg~V~~a~-~~~HGK~s~i~h~g----~~iF~glp~~f~v~RYHSLvv~~~~l-P~~l~vtA~ 148 (191)
T COG0512 75 IPILGVCLGHQAIAEAFGGKVVRAK-EPMHGKTSIITHDG----SGLFAGLPNPFTVTRYHSLVVDPETL-PEELEVTAE 148 (191)
T ss_pred CCEEEECccHHHHHHHhCCEEEecC-CCcCCeeeeeecCC----cccccCCCCCCEEEeeEEEEecCCCC-CCceEEEEE
Confidence 9999 9999999999999999998 789999 4333332 57999999999999999999988776 499999999
Q ss_pred cCC-CcEEEEEeCCCCcEEEEcCCCCCCCCCCCC
Q 037843 169 TED-GLIMAARHKKYKHLHGVQFHPESILTSEGK 201 (203)
Q Consensus 169 s~~-~~v~a~~~~~~~~i~gvQfHPE~~~~~~g~ 201 (203)
+++ +.++|++++++| ++|+|||||+..|+.|.
T Consensus 149 ~~d~~~IMai~h~~~p-i~gvQFHPESilT~~G~ 181 (191)
T COG0512 149 SEDGGVIMAVRHKKLP-IYGVQFHPESILTEYGH 181 (191)
T ss_pred eCCCCEEEEEeeCCCC-EEEEecCCccccccchH
Confidence 965 599999999999 99999999999999985
No 2
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=100.00 E-value=1.5e-42 Score=270.02 Aligned_cols=175 Identities=46% Similarity=0.803 Sum_probs=153.6
Q ss_pred cEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCCc
Q 037843 14 PIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGISFRTVLELGPTMP 93 (203)
Q Consensus 14 ~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~~~~~~P 93 (203)
||++|||+|||+++++++|+++ |+++.++++++.+.+++...++|+||||||||+|.+.+...++++.+..++|
T Consensus 1 ~il~idn~Dsft~nl~~~l~~~------g~~v~v~~~~~~~~~~~~~~~~d~iils~GPg~p~~~~~~~~~~~~~~~~~P 74 (187)
T PRK08007 1 MILLIDNYDSFTWNLYQYFCEL------GADVLVKRNDALTLADIDALKPQKIVISPGPCTPDEAGISLDVIRHYAGRLP 74 (187)
T ss_pred CEEEEECCCccHHHHHHHHHHC------CCcEEEEeCCCCCHHHHHhcCCCEEEEcCCCCChHHCCccHHHHHHhcCCCC
Confidence 5999999999999999999999 9999999987667888876689999999999999988776777777778899
Q ss_pred ee--ehhHHHHHHHhCCeeccccccccccc-eeEEEcccccccccccCCCCceEEeecccceeecCCCCCCCeEEEEEcC
Q 037843 94 LF--CMGLKCIGEALEGRLYVLLLVSCMGK-ALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWTE 170 (203)
Q Consensus 94 il--ClG~Qlla~a~gg~v~~~~~~~~~g~-~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~ 170 (203)
+| |+|||+||.++||+|.+.. ..++|. .++.+.. +++|++++..+.++++|++.|...+ +|++++++|+++
T Consensus 75 iLGIClG~Q~la~a~Gg~v~~~~-~~~~g~~~~v~~~~----~~l~~~~~~~~~v~~~H~~~v~~~~-lp~~~~v~a~~~ 148 (187)
T PRK08007 75 ILGVCLGHQAMAQAFGGKVVRAA-KVMHGKTSPITHNG----EGVFRGLANPLTVTRYHSLVVEPDS-LPACFEVTAWSE 148 (187)
T ss_pred EEEECHHHHHHHHHcCCEEEeCC-CcccCCceEEEECC----CCcccCCCCCcEEEEcchhEEccCC-CCCCeEEEEEeC
Confidence 99 9999999999999999987 456775 6676543 4689999888999999999996433 468999999999
Q ss_pred CCcEEEEEeCCCCcEEEEcCCCCCCCCCCCC
Q 037843 171 DGLIMAARHKKYKHLHGVQFHPESILTSEGK 201 (203)
Q Consensus 171 ~~~v~a~~~~~~~~i~gvQfHPE~~~~~~g~ 201 (203)
++.++|+++.+.| +||+|||||+..++.|.
T Consensus 149 ~~~i~a~~~~~~~-i~GvQfHPE~~~t~~G~ 178 (187)
T PRK08007 149 TREIMGIRHRQWD-LEGVQFHPESILSEQGH 178 (187)
T ss_pred CCcEEEEEeCCCC-EEEEEeCCcccCCcchH
Confidence 9999999999987 99999999999998874
No 3
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=100.00 E-value=7e-42 Score=267.75 Aligned_cols=175 Identities=46% Similarity=0.826 Sum_probs=152.1
Q ss_pred cEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCCc
Q 037843 14 PIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGISFRTVLELGPTMP 93 (203)
Q Consensus 14 ~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~~~~~~P 93 (203)
||+||||+|||++++.++|+++ |+++.+++.+..+.+++...++|+|||+|||++|++.+.....++.+..++|
T Consensus 1 ~il~idn~dsft~nl~~~l~~~------g~~v~v~~~~~~~~~~~~~~~~d~iIlsgGP~~p~~~~~~~~~i~~~~~~~P 74 (195)
T PRK07649 1 MILMIDNYDSFTFNLVQFLGEL------GQELVVKRNDEVTISDIENMKPDFLMISPGPCSPNEAGISMEVIRYFAGKIP 74 (195)
T ss_pred CEEEEeCCCccHHHHHHHHHHC------CCcEEEEeCCCCCHHHHhhCCCCEEEECCCCCChHhCCCchHHHHHhcCCCC
Confidence 5999999999999999999999 9999999987667777776689999999999999988776777777778899
Q ss_pred ee--ehhHHHHHHHhCCeeccccccccccc-eeEEEcccccccccccCCCCceEEeecccceeecCCCCCCCeEEEEEcC
Q 037843 94 LF--CMGLKCIGEALEGRLYVLLLVSCMGK-ALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWTE 170 (203)
Q Consensus 94 il--ClG~Qlla~a~gg~v~~~~~~~~~g~-~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~ 170 (203)
+| |||||+|+.++||+|.+.+ ..++|. ..+.... +++|++++..+.+++||++.+..++ +|++++++|+++
T Consensus 75 vLGIClG~Qlla~~lGg~V~~~~-~~~~G~~~~i~~~~----~~lf~~~~~~~~v~~~H~~~v~~~~-lp~~~~~~a~s~ 148 (195)
T PRK07649 75 IFGVCLGHQSIAQVFGGEVVRAE-RLMHGKTSLMHHDG----KTIFSDIPNPFTATRYHSLIVKKET-LPDCLEVTSWTE 148 (195)
T ss_pred EEEEcHHHHHHHHHcCCEEeeCC-CcccCCeEEEEECC----ChhhcCCCCCCEEEEechheEeccc-CCCCeEEEEEcC
Confidence 99 9999999999999999987 456776 4454432 5799999999999999999995333 468999999999
Q ss_pred CCcEEEEEeCCCCcEEEEcCCCCCCCCCCCC
Q 037843 171 DGLIMAARHKKYKHLHGVQFHPESILTSEGK 201 (203)
Q Consensus 171 ~~~v~a~~~~~~~~i~gvQfHPE~~~~~~g~ 201 (203)
++.++|+++++++ +||+|||||+..++.|.
T Consensus 149 ~~~v~a~~~~~~~-i~gvQFHPE~~~t~~g~ 178 (195)
T PRK07649 149 EGEIMAIRHKTLP-IEGVQFHPESIMTSHGK 178 (195)
T ss_pred CCcEEEEEECCCC-EEEEEECCCCCCCccHH
Confidence 9999999999987 99999999999888774
No 4
>PLN02335 anthranilate synthase
Probab=100.00 E-value=2e-41 Score=270.03 Aligned_cols=185 Identities=75% Similarity=1.261 Sum_probs=158.5
Q ss_pred CCCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhC
Q 037843 10 NDKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGISFRTVLELG 89 (203)
Q Consensus 10 ~~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~~~ 89 (203)
+..++|+|||++++|++++.++|+++ |+++.+++++..+.+++...++|+|||+|||++|++.+...+.+++++
T Consensus 16 ~~~~~ilviD~~dsft~~i~~~L~~~------g~~~~v~~~~~~~~~~~~~~~~d~iVisgGPg~p~d~~~~~~~~~~~~ 89 (222)
T PLN02335 16 KQNGPIIVIDNYDSFTYNLCQYMGEL------GCHFEVYRNDELTVEELKRKNPRGVLISPGPGTPQDSGISLQTVLELG 89 (222)
T ss_pred CccCcEEEEECCCCHHHHHHHHHHHC------CCcEEEEECCCCCHHHHHhcCCCEEEEcCCCCChhhccchHHHHHHhC
Confidence 44689999999999999999999999 999999998655677776557999999999999998877667777777
Q ss_pred CCCcee--ehhHHHHHHHhCCeeccccccccccc-eeEEEcccccccccccCCCCceEEeecccceeecCCCCCCCeEEE
Q 037843 90 PTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGK-ALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVT 166 (203)
Q Consensus 90 ~~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~-~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~ 166 (203)
.++||| |+|||+|+.++||++.+.+.+..+|. .++..+.. ..++||.+++..+.++++|+++|+.+++++.+++++
T Consensus 90 ~~~PiLGIClG~QlLa~alGg~v~~~~~~~~~G~~~~v~~~~~-~~~~Lf~~l~~~~~v~~~H~~~v~~~~lp~~~~~v~ 168 (222)
T PLN02335 90 PLVPLFGVCMGLQCIGEAFGGKIVRSPFGVMHGKSSPVHYDEK-GEEGLFSGLPNPFTAGRYHSLVIEKDTFPSDELEVT 168 (222)
T ss_pred CCCCEEEecHHHHHHHHHhCCEEEeCCCccccCceeeeEECCC-CCChhhhCCCCCCEEEechhheEecccCCCCceEEE
Confidence 889999 99999999999999998864456655 66766543 236899999999999999999998766654459999
Q ss_pred EEcCCCcEEEEEeCCCCcEEEEcCCCCCCCCCCCC
Q 037843 167 AWTEDGLIMAARHKKYKHLHGVQFHPESILTSEGK 201 (203)
Q Consensus 167 a~s~~~~v~a~~~~~~~~i~gvQfHPE~~~~~~g~ 201 (203)
|+++++.+++++++++|++||+|||||+..+++|.
T Consensus 169 a~~~~~~v~ai~~~~~~~i~GvQfHPE~~~~~~g~ 203 (222)
T PLN02335 169 AWTEDGLIMAARHRKYKHIQGVQFHPESIITTEGK 203 (222)
T ss_pred EEcCCCCEEEEEecCCCCEEEEEeCCCCCCChhHH
Confidence 99999999999999887799999999999988763
No 5
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=100.00 E-value=6.5e-41 Score=261.14 Aligned_cols=175 Identities=45% Similarity=0.773 Sum_probs=151.1
Q ss_pred cEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCCc
Q 037843 14 PIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGISFRTVLELGPTMP 93 (203)
Q Consensus 14 ~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~~~~~~P 93 (203)
||+|||++|||++++.++++++ |+.+.+++++..+.+++.+.++|||||+||||+|.+.....++++++..++|
T Consensus 1 ~il~id~~dsft~~~~~~l~~~------g~~v~v~~~~~~~~~~~~~~~~d~iilsgGpg~p~~~~~~~~~i~~~~~~~P 74 (188)
T TIGR00566 1 MVLMIDNYDSFTYNLVQYFCEL------GAEVVVKRNDSLTLQEIEALLPLLIVISPGPCTPNEAGISLEAIRHFAGKLP 74 (188)
T ss_pred CEEEEECCcCHHHHHHHHHHHc------CCceEEEECCCCCHHHHHhcCCCEEEEcCCCCChhhcchhHHHHHHhccCCC
Confidence 5999999999999999999999 9999999876566788877789999999999999876655677777767899
Q ss_pred ee--ehhHHHHHHHhCCeeccccccccccc-eeEEEcccccccccccCCCCceEEeecccceeecCCCCCCCeEEEEEcC
Q 037843 94 LF--CMGLKCIGEALEGRLYVLLLVSCMGK-ALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWTE 170 (203)
Q Consensus 94 il--ClG~Qlla~a~gg~v~~~~~~~~~g~-~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~ 170 (203)
|| |+|||+|+.++||+|.+.. ..++|. .++.++. +++|.++++++.++++|++.|..+. +|++++++|+++
T Consensus 75 vLGIC~G~Qll~~~~GG~v~~~~-~~~~g~~~~v~~~~----~~~~~~l~~~~~v~~~H~~~v~~~~-l~~~~~v~a~s~ 148 (188)
T TIGR00566 75 ILGVCLGHQAMGQAFGGDVVRAN-TVMHGKTSEIEHNG----AGIFRGLFNPLTATRYHSLVVEPET-LPTCFPVTAWEE 148 (188)
T ss_pred EEEECHHHHHHHHHcCCEEeeCC-CccccceEEEEECC----CccccCCCCCcEEEEcccceEeccc-CCCceEEEEEcC
Confidence 99 9999999999999999987 556774 7777654 4578888878999999999996444 468999999997
Q ss_pred CC-cEEEEEeCCCCcEEEEcCCCCCCCCCCCC
Q 037843 171 DG-LIMAARHKKYKHLHGVQFHPESILTSEGK 201 (203)
Q Consensus 171 ~~-~v~a~~~~~~~~i~gvQfHPE~~~~~~g~ 201 (203)
++ .++|++++++| +||+|||||+..++.|.
T Consensus 149 ~~~~v~a~~~~~~~-i~gvQfHPE~~~t~~G~ 179 (188)
T TIGR00566 149 ENIEIMAIRHRDLP-LEGVQFHPESILSEQGH 179 (188)
T ss_pred CCCEEEEEEeCCCC-EEEEEeCCCccCCcccH
Confidence 65 99999999988 99999999999998875
No 6
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=100.00 E-value=1.7e-40 Score=259.54 Aligned_cols=176 Identities=44% Similarity=0.783 Sum_probs=149.6
Q ss_pred cEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCCc
Q 037843 14 PIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGISFRTVLELGPTMP 93 (203)
Q Consensus 14 ~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~~~~~~P 93 (203)
||++|||+|||+++++++|++. |+++.+++++..+.+++...++|+|||+|||++|.+.+....+++.+.+++|
T Consensus 1 ~il~id~~dsf~~nl~~~l~~~------~~~~~v~~~~~~~~~~~~~~~~~~iilsgGP~~~~~~~~~~~~i~~~~~~~P 74 (191)
T PRK06774 1 MLLLIDNYDSFTYNLYQYFCEL------GTEVMVKRNDELQLTDIEQLAPSHLVISPGPCTPNEAGISLAVIRHFADKLP 74 (191)
T ss_pred CEEEEECCCchHHHHHHHHHHC------CCcEEEEeCCCCCHHHHHhcCCCeEEEcCCCCChHhCCCchHHHHHhcCCCC
Confidence 5999999999999999999998 9999999987667888877789999999999999988776777777778899
Q ss_pred ee--ehhHHHHHHHhCCeeccccccccccceeEEEcccccccccccCCCCceEEeecccceeecCCCCCCCeEEEEEcCC
Q 037843 94 LF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWTED 171 (203)
Q Consensus 94 il--ClG~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~ 171 (203)
|| |+|||+|+.++||+|.+.. ..++|+..+..... +++|++++..+.++++|++.+...+ +|++++++|+++.
T Consensus 75 iLGIC~G~Qlla~~~GG~v~~~~-~~~~G~~~~~~~~~---~~lf~~l~~~~~v~~~Hs~~v~~~~-lp~~~~vlA~s~~ 149 (191)
T PRK06774 75 ILGVCLGHQALGQAFGARVVRAR-QVMHGKTSAICHSG---QGVFRGLNQPLTVTRYHSLVIAADS-LPGCFELTAWSER 149 (191)
T ss_pred EEEECHHHHHHHHHhCCEEEeCC-cceecceEEEEecC---chhhcCCCCCcEEEEeCcceeeccC-CCCCeEEEEEeCC
Confidence 99 9999999999999999987 46788855544322 5799999888999999999995333 4689999999864
Q ss_pred C----cEEEEEeCCCCcEEEEcCCCCCCCCCCCC
Q 037843 172 G----LIMAARHKKYKHLHGVQFHPESILTSEGK 201 (203)
Q Consensus 172 ~----~v~a~~~~~~~~i~gvQfHPE~~~~~~g~ 201 (203)
+ .++++++++.| +||+|||||+..++.|.
T Consensus 150 d~~~~~i~~~~~~~~~-i~GvQfHPE~~~~~~G~ 182 (191)
T PRK06774 150 GGEMDEIMGIRHRTLP-LEGVQFHPESILSEQGH 182 (191)
T ss_pred CCCcceEEEEEeCCCC-EEEEEECCCcCCCccHH
Confidence 2 46788888776 99999999998888773
No 7
>CHL00101 trpG anthranilate synthase component 2
Probab=100.00 E-value=2.4e-40 Score=258.41 Aligned_cols=177 Identities=50% Similarity=0.875 Sum_probs=148.4
Q ss_pred cEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCCc
Q 037843 14 PIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGISFRTVLELGPTMP 93 (203)
Q Consensus 14 ~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~~~~~~P 93 (203)
||+|||++|+|++++++++++. |+++.+++++..+.+++...++|||||+|||+++.+......+++.+..++|
T Consensus 1 ~iliid~~dsft~~l~~~l~~~------g~~~~v~~~~~~~~~~~~~~~~dgiiisgGpg~~~~~~~~~~i~~~~~~~~P 74 (190)
T CHL00101 1 MILIIDNYDSFTYNLVQSLGEL------NSDVLVCRNDEIDLSKIKNLNIRHIIISPGPGHPRDSGISLDVISSYAPYIP 74 (190)
T ss_pred CEEEEECCCchHHHHHHHHHhc------CCCEEEEECCCCCHHHHhhCCCCEEEECCCCCChHHCcchHHHHHHhcCCCc
Confidence 5999999999999999999999 9999999876556767765579999999999999876655556655678899
Q ss_pred ee--ehhHHHHHHHhCCeeccccccccccceeEEEcccccccccccCCCCceEEeecccceeecCCCCCCCeEEEEEcCC
Q 037843 94 LF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWTED 171 (203)
Q Consensus 94 il--ClG~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~ 171 (203)
+| |+|||+|+.++||+|.+.+ ..++|........ .+++|.+++..+.++++|+|.|...+ +|++++++|++++
T Consensus 75 iLGIClG~Qlla~~~Gg~V~~~~-~~~~g~~~~~~~~---~~~l~~~~~~~~~v~~~H~~~v~~~~-lp~~~~vla~s~~ 149 (190)
T CHL00101 75 ILGVCLGHQSIGYLFGGKIIKAP-KPMHGKTSKIYHN---HDDLFQGLPNPFTATRYHSLIIDPLN-LPSPLEITAWTED 149 (190)
T ss_pred EEEEchhHHHHHHHhCCEEEECC-CcccCceeeEeeC---CcHhhccCCCceEEEcchhheeeccc-CCCceEEEEEcCC
Confidence 99 9999999999999999987 4556763322222 25799999989999999999996433 4689999999999
Q ss_pred CcEEEEEeCCCCcEEEEcCCCCCCCCCCCC
Q 037843 172 GLIMAARHKKYKHLHGVQFHPESILTSEGK 201 (203)
Q Consensus 172 ~~v~a~~~~~~~~i~gvQfHPE~~~~~~g~ 201 (203)
+.+++++++++|++||+|||||++.++.|.
T Consensus 150 ~~v~a~~~~~~~~i~gvQfHPE~~~~~~g~ 179 (190)
T CHL00101 150 GLIMACRHKKYKMLRGIQFHPESLLTTHGQ 179 (190)
T ss_pred CcEEEEEeCCCCCEEEEEeCCccCCChhHH
Confidence 999999999876699999999999888764
No 8
>PRK05637 anthranilate synthase component II; Provisional
Probab=100.00 E-value=6.8e-40 Score=258.60 Aligned_cols=177 Identities=32% Similarity=0.529 Sum_probs=149.0
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGISFRTVLELGPT 91 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~~~~~ 91 (203)
|++|++||++|||+++++++|+++ |+.+++++++ .+.+++...++|+|||+|||+++.+.+...++++....+
T Consensus 1 ~~~il~iD~~dsf~~nl~~~l~~~------g~~~~v~~~~-~~~~~l~~~~~~~iIlsgGPg~~~d~~~~~~li~~~~~~ 73 (208)
T PRK05637 1 MTHVVLIDNHDSFVYNLVDAFAVA------GYKCTVFRNT-VPVEEILAANPDLICLSPGPGHPRDAGNMMALIDRTLGQ 73 (208)
T ss_pred CCEEEEEECCcCHHHHHHHHHHHC------CCcEEEEeCC-CCHHHHHhcCCCEEEEeCCCCCHHHhhHHHHHHHHHhCC
Confidence 578999999999999999999999 9999999986 567777766899999999999998876656667655467
Q ss_pred Ccee--ehhHHHHHHHhCCeeccccccccccc-eeEEEcccccccccccCCC------------CceEEeecccceeecC
Q 037843 92 MPLF--CMGLKCIGEALEGRLYVLLLVSCMGK-ALVYYNEKEEADGLLAGLS------------NPFTAGRYHGLVIEKD 156 (203)
Q Consensus 92 ~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~-~~i~~~~~~~~~~lf~~~~------------~~~~~~~~H~~~v~~~ 156 (203)
+||| |+|||+|+.++||+|.+.. +++|. ..+.++..+..+++|.+++ .++.++++|++.|..
T Consensus 74 ~PiLGIClG~Qlla~alGG~V~~~~--~~~G~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~V~~~H~~~v~~- 150 (208)
T PRK05637 74 IPLLGICLGFQALLEHHGGKVEPCG--PVHGTTDNMILTDAGVQSPVFAGLATDVEPDHPEIPGRKVPIARYHSLGCVV- 150 (208)
T ss_pred CCEEEEcHHHHHHHHHcCCeeccCC--cccceEEEeEECCCCCCCcccCCCCcccccccccccCCceEEEEechhhhhc-
Confidence 9999 9999999999999999764 46666 5566665555578998875 358899999999987
Q ss_pred CCCCCCeEEEEEcCC--C-cEEEEEeCCCCcEEEEcCCCCCCCCCCCC
Q 037843 157 SFRSDELEVTAWTED--G-LIMAARHKKYKHLHGVQFHPESILTSEGK 201 (203)
Q Consensus 157 ~l~~~~~~~~a~s~~--~-~v~a~~~~~~~~i~gvQfHPE~~~~~~g~ 201 (203)
+|++++++|++++ | .++++++.+.+ +||+|||||+.+|++|.
T Consensus 151 --lp~~~~vlA~s~~~~~~v~~a~~~~~~~-~~GvQfHPE~~~T~~G~ 195 (208)
T PRK05637 151 --APDGMESLGTCSSEIGPVIMAAETTDGK-AIGLQFHPESVLSPTGP 195 (208)
T ss_pred --CCCCeEEEEEecCCCCCEEEEEEECCCC-EEEEEeCCccCcCCCHH
Confidence 7899999999754 4 46788888876 99999999999999985
No 9
>PRK05670 anthranilate synthase component II; Provisional
Probab=100.00 E-value=1.3e-39 Score=254.13 Aligned_cols=175 Identities=51% Similarity=0.913 Sum_probs=148.7
Q ss_pred cEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCCc
Q 037843 14 PIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGISFRTVLELGPTMP 93 (203)
Q Consensus 14 ~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~~~~~~P 93 (203)
||+|||++|+|++++.++|++. |+.+.+++++....+++...++|||||+||||++.+.+...++++++.+++|
T Consensus 1 ~iliid~~d~f~~~i~~~l~~~------g~~~~v~~~~~~~~~~~~~~~~dglIlsgGpg~~~d~~~~~~~l~~~~~~~P 74 (189)
T PRK05670 1 MILLIDNYDSFTYNLVQYLGEL------GAEVVVYRNDEITLEEIEALNPDAIVLSPGPGTPAEAGISLELIREFAGKVP 74 (189)
T ss_pred CEEEEECCCchHHHHHHHHHHC------CCcEEEEECCCCCHHHHHhCCCCEEEEcCCCCChHHcchHHHHHHHhcCCCC
Confidence 5999999999999999999999 9999999986445666665579999999999999887766677777777899
Q ss_pred ee--ehhHHHHHHHhCCeeccccccccccc-eeEEEcccccccccccCCCCceEEeecccceeecCCCCCCCeEEEEEcC
Q 037843 94 LF--CMGLKCIGEALEGRLYVLLLVSCMGK-ALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWTE 170 (203)
Q Consensus 94 il--ClG~Qlla~a~gg~v~~~~~~~~~g~-~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~ 170 (203)
+| |+|||+|+.++||+|.+.. ...+|. .++... .+++|.+++..+.++++|+|.|.+.+ +|++++++|+++
T Consensus 75 vLGIClG~Qlla~alGg~v~~~~-~~~~g~~~~v~~~----~~~l~~~~~~~~~v~~~H~~~v~~~~-lp~~~~~la~s~ 148 (189)
T PRK05670 75 ILGVCLGHQAIGEAFGGKVVRAK-EIMHGKTSPIEHD----GSGIFAGLPNPFTVTRYHSLVVDRES-LPDCLEVTAWTD 148 (189)
T ss_pred EEEECHHHHHHHHHhCCEEEecC-CcccCceeEEEeC----CCchhccCCCCcEEEcchhheecccc-CCCceEEEEEeC
Confidence 99 9999999999999999887 456676 455522 26799999888999999999995323 468999999999
Q ss_pred CCcEEEEEeCCCCcEEEEcCCCCCCCCCCCC
Q 037843 171 DGLIMAARHKKYKHLHGVQFHPESILTSEGK 201 (203)
Q Consensus 171 ~~~v~a~~~~~~~~i~gvQfHPE~~~~~~g~ 201 (203)
++.++|++++++| +||+|||||+..+++|.
T Consensus 149 ~~~i~a~~~~~~~-~~gvQfHPE~~~~~~g~ 178 (189)
T PRK05670 149 DGEIMGVRHKELP-IYGVQFHPESILTEHGH 178 (189)
T ss_pred CCcEEEEEECCCC-EEEEeeCCCcCCCcchH
Confidence 9999999998877 99999999998777663
No 10
>KOG0026 consensus Anthranilate synthase, beta chain [Amino acid transport and metabolism]
Probab=100.00 E-value=6.2e-40 Score=241.96 Aligned_cols=184 Identities=74% Similarity=1.273 Sum_probs=170.2
Q ss_pred CCcEEEEeCCchHHHHHHHHH-HHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYM-GELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGISFRTVLELGP 90 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l-~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~~~~ 90 (203)
...|++|||||||++++.+|| -+. |+.+.+++.|+.+.+++...++++++||+|||.|.|.+...+.++++..
T Consensus 18 n~piv~IDNYDSFT~Nv~qYL~~e~------g~~~~VyRNDeiTV~El~~~NP~~LliSPGPG~P~DsGIs~~~i~~f~~ 91 (223)
T KOG0026|consen 18 NGPIIVIDNYDSFTYNLCQYLMGEL------GCHFEVYRNDELTVEELKRKNPRGLLISPGPGTPQDSGISLQTVLELGP 91 (223)
T ss_pred cCCEEEEecccchhHHHHHHhhhcc------CccEEEEecCcccHHHHhhcCCCeEEecCCCCCCccccchHHHHHHhCC
Confidence 578999999999999999999 344 9999999999999999999999999999999999999988899999999
Q ss_pred CCcee--ehhHHHHHHHhCCeeccccccccccc-eeEEEcccccccccccCCCCceEEeecccceeecCCCCCCCeEEEE
Q 037843 91 TMPLF--CMGLKCIGEALEGRLYVLLLVSCMGK-ALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTA 167 (203)
Q Consensus 91 ~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~-~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a 167 (203)
.+|+| |+|.|.|.+++||+|.+...+..||. .+|.++..++ ..+|+++++.+.+.+||+.....++|+.+.++++|
T Consensus 92 ~iP~fGvCMGlQCi~e~fGGkv~~a~~~i~HGK~S~i~~D~~~~-~G~f~g~~q~~~V~RYHSLa~~~sSlP~d~L~VTa 170 (223)
T KOG0026|consen 92 LVPLFGVCMGLQCIGEAFGGKIVRSPFGVMHGKSSMVHYDEKGE-EGLFSGLSNPFIVGRYHSLVIEKDSFPSDELEVTA 170 (223)
T ss_pred CCceeeeehhhhhhhhhhCcEEeccCcceeeccccccccCCccc-cccccCCCCCeEEEeeeeeeeecccCCccceeeeE
Confidence 99999 99999999999999999876788998 7888876554 67999999999999999999999898879999999
Q ss_pred EcCCCcEEEEEeCCCCcEEEEcCCCCCCCCCCCCC
Q 037843 168 WTEDGLIMAARHKKYKHLHGVQFHPESILTSEGKT 202 (203)
Q Consensus 168 ~s~~~~v~a~~~~~~~~i~gvQfHPE~~~~~~g~~ 202 (203)
|++++.+++.+|+.|.++-|+|||||+..+++|.+
T Consensus 171 wTEnG~iMgaRHkKY~~ieGVQfHPESIlteeGk~ 205 (223)
T KOG0026|consen 171 WTEDGLVMAARHRKYKHIQGVQFHPESIITTEGKT 205 (223)
T ss_pred eccCcEEEeeeccccccccceeecchhhhhhhhHH
Confidence 99999999999999988999999999999999863
No 11
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=100.00 E-value=2.7e-39 Score=253.13 Aligned_cols=175 Identities=41% Similarity=0.746 Sum_probs=148.8
Q ss_pred cEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCCc
Q 037843 14 PIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGISFRTVLELGPTMP 93 (203)
Q Consensus 14 ~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~~~~~~P 93 (203)
||++||++|||+++++++|+++ |+.+.+++++..+.+++.+.++|+||++|||+++++.+...++++.+..++|
T Consensus 1 ~il~id~~dsft~~~~~~l~~~------g~~~~~~~~~~~~~~~~~~~~~~~iilsgGp~~~~~~~~~~~~i~~~~~~~P 74 (193)
T PRK08857 1 MLLMIDNYDSFTYNLYQYFCEL------GAQVKVVRNDEIDIDGIEALNPTHLVISPGPCTPNEAGISLQAIEHFAGKLP 74 (193)
T ss_pred CEEEEECCCCcHHHHHHHHHHC------CCcEEEEECCCCCHHHHhhCCCCEEEEeCCCCChHHCcchHHHHHHhcCCCC
Confidence 5999999999999999999999 9999999977555666655679999999999999887766677777778899
Q ss_pred ee--ehhHHHHHHHhCCeeccccccccccc-eeEEEcccccccccccCCCCceEEeecccceeecCCCCCCCeEEEEEcC
Q 037843 94 LF--CMGLKCIGEALEGRLYVLLLVSCMGK-ALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWTE 170 (203)
Q Consensus 94 il--ClG~Qlla~a~gg~v~~~~~~~~~g~-~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~ 170 (203)
+| |+|||+|+.++||+|.+.+ ..++|+ ..+..+. +++|.+++..+.+++||++.|...+ +|++++++|+++
T Consensus 75 iLGIClG~Qlia~a~Gg~v~~~~-~~~~G~~~~~~~~~----~~l~~~~~~~~~v~~~H~~~v~~~~-lp~~~~v~a~s~ 148 (193)
T PRK08857 75 ILGVCLGHQAIAQVFGGQVVRAR-QVMHGKTSPIRHTG----RSVFKGLNNPLTVTRYHSLVVKNDT-LPECFELTAWTE 148 (193)
T ss_pred EEEEcHHHHHHHHHhCCEEEeCC-CceeCceEEEEECC----CcccccCCCccEEEEccEEEEEcCC-CCCCeEEEEEec
Confidence 99 9999999999999999987 456777 4555432 5799999888999999999997434 468999999885
Q ss_pred --C---CcEEEEEeCCCCcEEEEcCCCCCCCCCCCC
Q 037843 171 --D---GLIMAARHKKYKHLHGVQFHPESILTSEGK 201 (203)
Q Consensus 171 --~---~~v~a~~~~~~~~i~gvQfHPE~~~~~~g~ 201 (203)
+ +.+++++++++| +||+|||||+..+++|.
T Consensus 149 ~~~~~~~~i~~~~~~~~p-i~gvQfHPE~~~t~~g~ 183 (193)
T PRK08857 149 LEDGSMDEIMGFQHKTLP-IEAVQFHPESIKTEQGH 183 (193)
T ss_pred CcCCCcceEEEEEeCCCC-EEEEeeCCCcCCCcchH
Confidence 3 368999999987 99999999999999875
No 12
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=100.00 E-value=3.5e-39 Score=251.91 Aligned_cols=175 Identities=30% Similarity=0.564 Sum_probs=148.6
Q ss_pred CcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCC
Q 037843 13 NPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGISFRTVLELGPTM 92 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~~~~~~ 92 (203)
+||+|||++|+|+++++++|+++ |+++.+++++..+++++. .+|+|||+|||+.+.+.+.+.++|+++..++
T Consensus 2 ~~iliid~~dsf~~~i~~~l~~~------g~~~~v~~~~~~~~~~l~--~~d~iIi~gGp~~~~~~~~~~~~i~~~~~~~ 73 (190)
T PRK06895 2 TKLLIINNHDSFTFNLVDLIRKL------GVPMQVVNVEDLDLDEVE--NFSHILISPGPDVPRAYPQLFAMLERYHQHK 73 (190)
T ss_pred cEEEEEeCCCchHHHHHHHHHHc------CCcEEEEECCccChhHhc--cCCEEEECCCCCChHHhhHHHHHHHHhcCCC
Confidence 68999999999999999999999 999999987644556665 5799999999998766566667777777789
Q ss_pred cee--ehhHHHHHHHhCCeeccccccccccc-eeEEEcccccccccccCCCCceEEeecccceeecCCCCCCCeEEEEEc
Q 037843 93 PLF--CMGLKCIGEALEGRLYVLLLVSCMGK-ALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWT 169 (203)
Q Consensus 93 Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~-~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s 169 (203)
|+| |+|||+|+.++||+|.+.+ ...+|. ..+.... .+++|++++..+.++++|++.+..+++ |+++.++|.+
T Consensus 74 PiLGIClG~Qlla~~~Gg~V~~~~-~~~~g~~~~v~~~~---~~~l~~~~~~~~~v~~~Hs~~v~~~~l-p~~l~~~a~~ 148 (190)
T PRK06895 74 SILGVCLGHQTLCEFFGGELYNLN-NVRHGQQRPLKVRS---NSPLFDGLPEEFNIGLYHSWAVSEENF-PTPLEITAVC 148 (190)
T ss_pred CEEEEcHHHHHHHHHhCCeEeecC-CCccCceEEEEECC---CChhhhcCCCceEEEcchhheeccccc-CCCeEEEEEC
Confidence 999 9999999999999998876 345665 5665533 378999999999999999999975444 5889999999
Q ss_pred CCCcEEEEEeCCCCcEEEEcCCCCCCCCCCCC
Q 037843 170 EDGLIMAARHKKYKHLHGVQFHPESILTSEGK 201 (203)
Q Consensus 170 ~~~~v~a~~~~~~~~i~gvQfHPE~~~~~~g~ 201 (203)
+++.+++++++++| +||+|||||+..+++|.
T Consensus 149 ~~~~i~a~~~~~~p-i~GvQFHPE~~~~~~g~ 179 (190)
T PRK06895 149 DENVVMAMQHKTLP-IYGVQFHPESYISEFGE 179 (190)
T ss_pred CCCcEEEEEECCCC-EEEEEeCCCcCCCcchH
Confidence 89999999999988 99999999999998874
No 13
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=100.00 E-value=5.2e-37 Score=239.28 Aligned_cols=171 Identities=26% Similarity=0.408 Sum_probs=147.6
Q ss_pred EEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcchHHHHHHH-hCCCCc
Q 037843 15 IVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGISFRTVLE-LGPTMP 93 (203)
Q Consensus 15 i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~-~~~~~P 93 (203)
|+|||++++|++++.++++.+ |+++.+++++ .+++++...++|||||+||++++++... ..+++. ++.++|
T Consensus 1 i~iiD~g~~~~~~l~~~l~~~------g~~~~~~~~~-~~~~~~~~~~~~glii~Gg~~~~~~~~~-~~~i~~~~~~~~P 72 (188)
T TIGR00888 1 ILVLDFGSQYTQLIARRLREL------GVYSELVPNT-TPLEEIREKNPKGIILSGGPSSVYAENA-PRADEKIFELGVP 72 (188)
T ss_pred CEEEECCchHHHHHHHHHHHc------CCEEEEEeCC-CCHHHHhhcCCCEEEECCCCCCcCcCCc-hHHHHHHHhCCCC
Confidence 689999999999999999999 9999999876 4567776556779999999999886543 345555 467899
Q ss_pred ee--ehhHHHHHHHhCCeeccccccccccceeEEEcccccccccccCCCCceEEeecccceeecCCCCCCCeEEEEEcCC
Q 037843 94 LF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWTED 171 (203)
Q Consensus 94 il--ClG~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~ 171 (203)
+| |+|||+|+.++||+|.+.. ..+.|+.++..+.. ++||.++++.+.++++|+|.+.. +|++++++|++++
T Consensus 73 ilGIC~G~Qll~~~lgg~v~~~~-~~~~g~~~v~~~~~---~~l~~~~~~~~~~~~~H~~~v~~---l~~~~~vla~~~~ 145 (188)
T TIGR00888 73 VLGICYGMQLMAKQLGGEVGRAE-KREYGKAELEILDE---DDLFRGLPDESTVWMSHGDKVKE---LPEGFKVLATSDN 145 (188)
T ss_pred EEEECHHHHHHHHhcCceEecCC-CccceeEEEEEecC---CHhhcCCCCCcEEEeEccceeec---CCCCCEEEEECCC
Confidence 99 9999999999999999887 56788888877654 57999998889999999999976 6799999999999
Q ss_pred CcEEEEEeCCCCcEEEEcCCCCCCCCCCCC
Q 037843 172 GLIMAARHKKYKHLHGVQFHPESILTSEGK 201 (203)
Q Consensus 172 ~~v~a~~~~~~~~i~gvQfHPE~~~~~~g~ 201 (203)
+.++++++++++ +||+|||||++.+++|.
T Consensus 146 ~~v~a~~~~~~~-~~g~QfHPE~~~~~~g~ 174 (188)
T TIGR00888 146 CPVAAMAHEEKP-IYGVQFHPEVTHTEYGN 174 (188)
T ss_pred CCeEEEEECCCC-EEEEeeCCccCCChhhH
Confidence 999999999877 99999999999887663
No 14
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=100.00 E-value=4.9e-37 Score=238.67 Aligned_cols=172 Identities=50% Similarity=0.836 Sum_probs=142.7
Q ss_pred EEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCCce
Q 037843 15 IVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGISFRTVLELGPTMPL 94 (203)
Q Consensus 15 i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~~~~~~Pi 94 (203)
|+|||++++|+.++.++++++ |+++.+++++..........++||||++||++++.+......+++.+.+++|+
T Consensus 1 il~~~~~~~~~~~~~~~l~~~------G~~~~~~~~~~~~~~~~~~~~~dgvil~gG~~~~~~~~~~~~i~~~~~~~~Pv 74 (184)
T cd01743 1 ILLIDNYDSFTYNLVQYLREL------GAEVVVVRNDEITLEELELLNPDAIVISPGPGHPEDAGISLEIIRALAGKVPI 74 (184)
T ss_pred CEEEeCCCccHHHHHHHHHHc------CCceEEEeCCCCCHHHHhhcCCCEEEECCCCCCcccchhHHHHHHHHhcCCCE
Confidence 689999999999999999999 99999999864332211223799999999999987765544555556678999
Q ss_pred e--ehhHHHHHHHhCCeeccccccccccc-eeEEEcccccccccccCCCCceEEeecccceeecCCCCCCC--eEEEEEc
Q 037843 95 F--CMGLKCIGEALEGRLYVLLLVSCMGK-ALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDE--LEVTAWT 169 (203)
Q Consensus 95 l--ClG~Qlla~a~gg~v~~~~~~~~~g~-~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~~~--~~~~a~s 169 (203)
| |+|||+|+.++||+|.+.+ ...+|. .++.... +++|+++++.+.++++|+|.|.. ++.+ ++++|++
T Consensus 75 lGIC~G~Qlla~~~Gg~v~~~~-~~~~g~~~~v~~~~----~~~~~~~~~~~~~~~~H~~~v~~---~~~~~~~~~la~~ 146 (184)
T cd01743 75 LGVCLGHQAIAEAFGGKVVRAP-EPMHGKTSEIHHDG----SGLFKGLPQPFTVGRYHSLVVDP---DPLPDLLEVTAST 146 (184)
T ss_pred EEECHhHHHHHHHhCCEEEeCC-CCCcCceeEEEECC----CccccCCCCCcEEEeCcEEEEec---CCCCceEEEEEeC
Confidence 9 9999999999999999887 344454 6666542 67899999899999999999987 5555 9999999
Q ss_pred CCCcEEEEEeCCCCcEEEEcCCCCCCCCCCCC
Q 037843 170 EDGLIMAARHKKYKHLHGVQFHPESILTSEGK 201 (203)
Q Consensus 170 ~~~~v~a~~~~~~~~i~gvQfHPE~~~~~~g~ 201 (203)
+++.++|++++++| +||+|||||+..+++|.
T Consensus 147 ~~~~v~a~~~~~~~-i~gvQfHPE~~~~~~g~ 177 (184)
T cd01743 147 EDGVIMALRHRDLP-IYGVQFHPESILTEYGL 177 (184)
T ss_pred CCCeEEEEEeCCCC-EEEEeeCCCcCCCcchH
Confidence 99999999999987 99999999999999985
No 15
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=100.00 E-value=2.6e-36 Score=239.49 Aligned_cols=176 Identities=46% Similarity=0.760 Sum_probs=145.6
Q ss_pred CcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHh--ccCCCEEEECCCCCCCCCcchHHHHHHH-hC
Q 037843 13 NPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELK--RKKPRGVVISPGPGAPQESGISFRTVLE-LG 89 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~--~~~~dgiil~GG~~~~~~~~~~~~~i~~-~~ 89 (203)
+||+|+|++++|+.++.+++++. |+.+.+++++....++.. ..++|||||+|||+++.+.....+++++ ++
T Consensus 1 ~~ilv~d~~~~~~~~~~~~l~~~------G~~~~~~~~~~~~~~~~~~~~~~~dgliisGGp~~~~~~~~~~~~i~~~~~ 74 (214)
T PRK07765 1 MRILVVDNYDSFVFNLVQYLGQL------GVEAEVWRNDDPRLADEAAVAAQFDGVLLSPGPGTPERAGASIDMVRACAA 74 (214)
T ss_pred CeEEEEECCCcHHHHHHHHHHHc------CCcEEEEECCCcCHHHHHHhhcCCCEEEECCCCCChhhcchHHHHHHHHHh
Confidence 47999999999999999999999 999999987632222222 1269999999999998766655677777 46
Q ss_pred CCCcee--ehhHHHHHHHhCCeeccccccccccc-eeEEEcccccccccccCCCCceEEeecccceeecCCCCCCCeEEE
Q 037843 90 PTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGK-ALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVT 166 (203)
Q Consensus 90 ~~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~-~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~ 166 (203)
+++||| |+|||+|+.++||+|.+.+ ..++|. ..+.+.. +.+|.++++.+.++++|++.+.+++ +|++++++
T Consensus 75 ~~~PiLGIC~G~Qlla~a~GG~v~~~~-~~~~g~~~~v~~~~----~~~~~~~~~~~~v~~~H~~~v~~~~-lp~~~~vl 148 (214)
T PRK07765 75 AGTPLLGVCLGHQAIGVAFGATVDRAP-ELLHGKTSSVHHTG----VGVLAGLPDPFTATRYHSLTILPET-LPAELEVT 148 (214)
T ss_pred CCCCEEEEccCHHHHHHHhCCEEeeCC-CCccCceeEEEECC----CccccCCCCccEEEecchheEeccc-CCCceEEE
Confidence 789999 9999999999999999876 455666 5666654 4588888888999999999996433 46899999
Q ss_pred EEcCCCcEEEEEeCCCCcEEEEcCCCCCCCCCCCC
Q 037843 167 AWTEDGLIMAARHKKYKHLHGVQFHPESILTSEGK 201 (203)
Q Consensus 167 a~s~~~~v~a~~~~~~~~i~gvQfHPE~~~~~~g~ 201 (203)
|+++++.++|+++++++ +||+|||||+..++.|.
T Consensus 149 a~s~~~~vqa~~~~~~~-i~gvQfHPE~~~t~~g~ 182 (214)
T PRK07765 149 ARTDSGVIMAVRHRELP-IHGVQFHPESVLTEGGH 182 (214)
T ss_pred EEcCCCcEEEEEeCCCC-EEEEeeCCCcccCcchH
Confidence 99999999999999887 99999999998887765
No 16
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=100.00 E-value=2.9e-36 Score=266.05 Aligned_cols=174 Identities=35% Similarity=0.584 Sum_probs=147.3
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCc---ccHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHh
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDE---LTVAELKRKKPRGVVISPGPGAPQESGISFRTVLEL 88 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~---~~~~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~~ 88 (203)
|.||+||||+|||+++++++|+++ |+++.+++.+. ...+++...++|+||||||||+|.+.+...++++.+
T Consensus 1 ~~~iLiIDn~dsft~nl~~~lr~~------g~~v~V~~~~~~~~~~~~~l~~~~~~~IIlSpGPg~p~d~~~~~~i~~~~ 74 (531)
T PRK09522 1 MADILLLDNIDSFTYNLADQLRSN------GHNVVIYRNHIPAQTLIERLATMSNPVLMLSPGPGVPSEAGCMPELLTRL 74 (531)
T ss_pred CCeEEEEeCCChHHHHHHHHHHHC------CCCEEEEECCCCCccCHHHHHhcCcCEEEEcCCCCChhhCCCCHHHHHHH
Confidence 468999999999999999999999 99999988642 235666655789999999999999877665666656
Q ss_pred CCCCcee--ehhHHHHHHHhCCeeccccccccccc-eeEEEcccccccccccCCCCceEEeecccceeecCCCCCCCeEE
Q 037843 89 GPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGK-ALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEV 165 (203)
Q Consensus 89 ~~~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~-~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~~~~~~ 165 (203)
..++||| |+|||+|+.++||+|.+.. ...+|+ ..+.+.. .++|.+++..+.+++||++.+.. +|+++++
T Consensus 75 ~~~iPILGIClG~QlLa~a~GG~V~~~~-~~~~G~~~~i~~~~----~~lf~~~~~~~~v~~~Hs~~v~~---lP~~l~v 146 (531)
T PRK09522 75 RGKLPIIGICLGHQAIVEAYGGYVGQAG-EILHGKASSIEHDG----QAMFAGLTNPLPVARYHSLVGSN---IPAGLTI 146 (531)
T ss_pred hcCCCEEEEcHHHHHHHHhcCCEEEeCC-ceeeeeEEEEeecC----CccccCCCCCcEEEEehheeccc---CCCCcEE
Confidence 6789999 9999999999999999876 466777 4444332 56999999899999999999976 6799999
Q ss_pred EEEcCCCcEEEEEeCCCCcEEEEcCCCCCCCCCCCC
Q 037843 166 TAWTEDGLIMAARHKKYKHLHGVQFHPESILTSEGK 201 (203)
Q Consensus 166 ~a~s~~~~v~a~~~~~~~~i~gvQfHPE~~~~~~g~ 201 (203)
+|++ ++.++++++.+.+ +||+|||||+.+|++|.
T Consensus 147 lA~s-d~~v~ai~~~~~~-i~GVQFHPEs~~T~~G~ 180 (531)
T PRK09522 147 NAHF-NGMVMAVRHDADR-VCGFQFHPESILTTQGA 180 (531)
T ss_pred EEec-CCCEEEEEECCCC-EEEEEecCccccCcchH
Confidence 9975 6789999998877 99999999999999985
No 17
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=100.00 E-value=4.9e-36 Score=232.31 Aligned_cols=170 Identities=28% Similarity=0.428 Sum_probs=141.5
Q ss_pred EEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc--hHHHHHHHhCCCC
Q 037843 15 IVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG--ISFRTVLELGPTM 92 (203)
Q Consensus 15 i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~--~~~~~i~~~~~~~ 92 (203)
|+|||++++|+.++.++|+++ |+.+.+++++ .+.++....++|||||+||++++++.. .+.+.+. +.++
T Consensus 1 i~~iD~g~~~~~~~~~~l~~~------G~~~~~~~~~-~~~~~~~~~~~dgvIl~Gg~~~~~~~~~~~~~~~~~--~~~~ 71 (181)
T cd01742 1 ILILDFGSQYTHLIARRVREL------GVYSEILPNT-TPLEEIKLKNPKGIILSGGPSSVYEEDAPRVDPEIF--ELGV 71 (181)
T ss_pred CEEEECCCchHHHHHHHHHhc------CceEEEecCC-CChhhhcccCCCEEEECCCcccccccccchhhHHHH--hcCC
Confidence 689999999999999999999 9999999875 333333333789999999999887643 2222222 3579
Q ss_pred cee--ehhHHHHHHHhCCeeccccccccccceeEEEcccccccccccCCCCceEEeecccceeecCCCCCCCeEEEEEcC
Q 037843 93 PLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWTE 170 (203)
Q Consensus 93 Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~ 170 (203)
|+| |+|||+|+.++||+|.+.. .++.|+..+.... .+++|.+++.++.++++|++.|.. +|++++++|+++
T Consensus 72 PilGIC~G~Qll~~~~gg~v~~~~-~~~~G~~~v~~~~---~~~l~~~~~~~~~~~~~H~~~v~~---l~~~~~~la~~~ 144 (181)
T cd01742 72 PVLGICYGMQLIAKALGGKVERGD-KREYGKAEIEIDD---SSPLFEGLPDEQTVWMSHGDEVVK---LPEGFKVIASSD 144 (181)
T ss_pred CEEEEcHHHHHHHHhcCCeEEeCC-CCcceEEEEEecC---CChhhcCCCCceEEEcchhhhhhh---cCCCcEEEEeCC
Confidence 999 9999999999999999887 5678887776543 377999999889999999999976 678999999999
Q ss_pred CCcEEEEEeCCCCcEEEEcCCCCCCCCCCCC
Q 037843 171 DGLIMAARHKKYKHLHGVQFHPESILTSEGK 201 (203)
Q Consensus 171 ~~~v~a~~~~~~~~i~gvQfHPE~~~~~~g~ 201 (203)
++.++++++++++ +||+|||||++.+++|.
T Consensus 145 ~~~i~a~~~~~~~-~~g~QfHPE~~~~~~g~ 174 (181)
T cd01742 145 NCPVAAIANEEKK-IYGVQFHPEVTHTEKGK 174 (181)
T ss_pred CCCEEEEEeCCCc-EEEEEcCCccccCcChH
Confidence 9999999998776 99999999999987774
No 18
>PRK00758 GMP synthase subunit A; Validated
Probab=100.00 E-value=8.9e-36 Score=231.58 Aligned_cols=168 Identities=26% Similarity=0.362 Sum_probs=141.4
Q ss_pred cEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCC-CEEEECCCCCCCCCcchHHHHHHHhCCCC
Q 037843 14 PIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKP-RGVVISPGPGAPQESGISFRTVLELGPTM 92 (203)
Q Consensus 14 ~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~-dgiil~GG~~~~~~~~~~~~~i~~~~~~~ 92 (203)
||+|||++++|++++.++++++ |+++.+++++ .+++++. ++ |||||+||+ +..+.....+++++ .++
T Consensus 1 ~i~iid~~~~~~~~i~~~l~~~------g~~~~~~~~~-~~~~~l~--~~~dgivi~Gg~-~~~~~~~~~~~l~~--~~~ 68 (184)
T PRK00758 1 KIVVVDNGGQYNHLIHRTLRYL------GVDAKIIPNT-TPVEEIK--AFEDGLILSGGP-DIERAGNCPEYLKE--LDV 68 (184)
T ss_pred CEEEEECCCchHHHHHHHHHHc------CCcEEEEECC-CCHHHHh--hcCCEEEECCCC-ChhhccccHHHHHh--CCC
Confidence 5999999999999999999999 9999988865 4566776 45 999999998 33333334445543 569
Q ss_pred cee--ehhHHHHHHHhCCeeccccccccccceeEEEcccccccccccCCCCceEEeecccceeecCCCCCCCeEEEEEcC
Q 037843 93 PLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWTE 170 (203)
Q Consensus 93 Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~ 170 (203)
||| |+|||+|+.++||+|.+.+ ..++|+..+..+.. +++|.++++.+.++++|+|.+.. +|++++++|+++
T Consensus 69 PilGIC~G~Q~L~~a~Gg~v~~~~-~~~~g~~~i~~~~~---~~l~~~~~~~~~~~~~H~~~v~~---l~~~~~~la~~~ 141 (184)
T PRK00758 69 PILGICLGHQLIAKAFGGEVGRGE-YGEYALVEVEILDE---DDILKGLPPEIRVWASHADEVKE---LPDGFEILARSD 141 (184)
T ss_pred CEEEEeHHHHHHHHhcCcEEecCC-CceeeeEEEEEcCC---ChhhhCCCCCcEEEeehhhhhhh---CCCCCEEEEECC
Confidence 999 9999999999999999987 56788877777643 67899999899999999999976 678999999999
Q ss_pred CCcEEEEEeCCCCcEEEEcCCCCCCCCCCCC
Q 037843 171 DGLIMAARHKKYKHLHGVQFHPESILTSEGK 201 (203)
Q Consensus 171 ~~~v~a~~~~~~~~i~gvQfHPE~~~~~~g~ 201 (203)
++.++|+++++++ +||+|||||++.+++|.
T Consensus 142 ~~~v~a~~~~~~~-~~g~QfHPE~~~~~~g~ 171 (184)
T PRK00758 142 ICEVEAMKHKEKP-IYGVQFHPEVAHTEYGE 171 (184)
T ss_pred CCCEEEEEECCCC-EEEEEcCCccCCCchHH
Confidence 9999999998876 99999999999887764
No 19
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=100.00 E-value=3.3e-36 Score=235.13 Aligned_cols=170 Identities=26% Similarity=0.320 Sum_probs=146.5
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCC-ceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcch----HHHHHH
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQG-YHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGI----SFRTVL 86 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g-~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~----~~~~i~ 86 (203)
+.+|+|+|++.++++.+.|++++. | +..++++++ .+.+++...++|||||+|||.++++.+. ...+|+
T Consensus 1 ~~~ilIld~g~q~~~li~r~~re~------g~v~~e~~~~~-~~~~~~~~~~~~giIlsGgp~sv~~~~~w~~~~~~~i~ 73 (198)
T COG0518 1 MRKILILDFGGQYLGLIARRLREL------GYVYSEIVPYT-GDAEELPLDSPDGIIISGGPMSVYDEDPWLPREKDLIK 73 (198)
T ss_pred CcEEEEEeCCCcHhHHHHHHHHHc------CCceEEEEeCC-CCcccccccCCCEEEEcCCCCCCccccccchhHHHHHH
Confidence 468999999999999999999998 8 777776765 6677777667899999999999987763 356676
Q ss_pred Hh-CCCCcee--ehhHHHHHHHhCCeeccccccccccceeEEEcccccccccccCCCCce-EEeecccceeecCCCCCCC
Q 037843 87 EL-GPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEADGLLAGLSNPF-TAGRYHGLVIEKDSFRSDE 162 (203)
Q Consensus 87 ~~-~~~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~~~~~-~~~~~H~~~v~~~~l~~~~ 162 (203)
++ ..++||| |+|||+||.++||+|.+.. ..+.|+.+++.+. .. +++|++++..+ .++++|+|.|.. +|++
T Consensus 74 ~~~~p~~pvLGIC~G~Ql~A~~lGg~V~~~~-~~E~G~~~v~~~~-~~-~~l~~gl~~~~~~v~~sH~D~v~~---lP~g 147 (198)
T COG0518 74 DAGVPGKPVLGICLGHQLLAKALGGKVERGP-KREIGWTPVELTE-GD-DPLFAGLPDLFTTVFMSHGDTVVE---LPEG 147 (198)
T ss_pred HhCCCCCCEEEEChhHHHHHHHhCCEEeccC-CCccceEEEEEec-Cc-cccccCCccccCccccchhCcccc---CCCC
Confidence 64 4667899 9999999999999999987 4899999999875 22 47999998877 599999999998 7899
Q ss_pred eEEEEEcCCCcEEEEEeCCCCcEEEEcCCCCCCC
Q 037843 163 LEVTAWTEDGLIMAARHKKYKHLHGVQFHPESIL 196 (203)
Q Consensus 163 ~~~~a~s~~~~v~a~~~~~~~~i~gvQfHPE~~~ 196 (203)
++++|+|+.|+++|+++. .+ +||+|||||.++
T Consensus 148 ~~vlA~s~~cp~qa~~~~-~~-~~gvQFHpEv~~ 179 (198)
T COG0518 148 AVVLASSETCPNQAFRYG-KR-AYGVQFHPEVTH 179 (198)
T ss_pred CEEEecCCCChhhheecC-Cc-EEEEeeeeEEeH
Confidence 999999999999999998 45 999999999987
No 20
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=100.00 E-value=2e-35 Score=261.99 Aligned_cols=175 Identities=50% Similarity=0.829 Sum_probs=149.8
Q ss_pred cEEEEeCCchHHHHHHHHHHHhhhhhcCCce-EEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCC
Q 037843 14 PIVVIDNYDSFTYNLCQYMGELELELSQGYH-FEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGISFRTVLELGPTM 92 (203)
Q Consensus 14 ~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~-~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~~~~~~ 92 (203)
||+||||+|||+++++++|+++ |.. +.++++++.+.+++...++|+|||+|||++|.+.+...++++.+..++
T Consensus 1 ~il~idn~dsft~nl~~~l~~~------g~~~v~~~~~~~~~~~~~~~~~~d~vIlsgGP~~p~~~~~~~~li~~~~~~~ 74 (534)
T PRK14607 1 MIILIDNYDSFTYNIYQYIGEL------GPEEIEVVRNDEITIEEIEALNPSHIVISPGPGRPEEAGISVEVIRHFSGKV 74 (534)
T ss_pred CEEEEECchhHHHHHHHHHHHc------CCCeEEEECCCCCCHHHHHhcCCCEEEECCCCCChhhCCccHHHHHHhhcCC
Confidence 5999999999999999999999 885 777766666778887668999999999999988776667777777789
Q ss_pred cee--ehhHHHHHHHhCCeeccccccccccc-eeEEEcccccccccccCCCCceEEeecccceeecCCCCCCCeEEEEEc
Q 037843 93 PLF--CMGLKCIGEALEGRLYVLLLVSCMGK-ALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWT 169 (203)
Q Consensus 93 Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~-~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s 169 (203)
||| |+|||+|+.++||+|.+.. ...+|. ..+.... +++|.+++..+.++++|++.|.... +|++++++|++
T Consensus 75 PvLGIClG~QlLa~a~Gg~V~~~~-~~~~G~~~~v~~~~----~~lf~~~~~~~~v~~~Hs~~v~~~~-lp~~~~vlA~s 148 (534)
T PRK14607 75 PILGVCLGHQAIGYAFGGKIVHAK-RILHGKTSPIDHNG----KGLFRGIPNPTVATRYHSLVVEEAS-LPECLEVTAKS 148 (534)
T ss_pred CEEEEcHHHHHHHHHcCCeEecCC-ccccCCceeEEECC----CcchhcCCCCcEEeeccchheeccc-CCCCeEEEEEc
Confidence 999 9999999999999999987 456776 5555432 5689999888999999999996434 46899999999
Q ss_pred CCCcEEEEEeCCCCcEEEEcCCCCCCCCCCCC
Q 037843 170 EDGLIMAARHKKYKHLHGVQFHPESILTSEGK 201 (203)
Q Consensus 170 ~~~~v~a~~~~~~~~i~gvQfHPE~~~~~~g~ 201 (203)
+++.+++++++++| +||+|||||+..+++|.
T Consensus 149 ~d~~i~a~~~~~~p-i~GvQFHPE~~~t~~g~ 179 (534)
T PRK14607 149 DDGEIMGIRHKEHP-IFGVQFHPESILTEEGK 179 (534)
T ss_pred CCCCEEEEEECCCC-EEEEEeCCCCCCChhHH
Confidence 99999999999988 99999999999888774
No 21
>PLN02347 GMP synthetase
Probab=100.00 E-value=3.2e-35 Score=259.18 Aligned_cols=174 Identities=21% Similarity=0.292 Sum_probs=149.2
Q ss_pred CcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcch--HHH-HHHHh-
Q 037843 13 NPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGI--SFR-TVLEL- 88 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~--~~~-~i~~~- 88 (203)
.+|+|||++++|++++.++++++ |+.+++++++ .+.+++...++|||||||||+++++.+. +.. +++.+
T Consensus 11 ~~IlIID~G~~~t~~I~r~lrel------gv~~~v~p~~-~~~~~i~~~~~dgIILsGGP~sv~~~~~p~~~~~i~~~~~ 83 (536)
T PLN02347 11 DVVLILDYGSQYTHLITRRVREL------GVYSLLLSGT-ASLDRIASLNPRVVILSGGPHSVHVEGAPTVPEGFFDYCR 83 (536)
T ss_pred CEEEEEECCCcHHHHHHHHHHHC------CCeEEEEECC-CCHHHHhcCCCCEEEECCCCCcccccCCchhhHHHHHHHH
Confidence 57999999999999999999999 9999999886 6788887667999999999999886532 222 23322
Q ss_pred CCCCcee--ehhHHHHHHHhCCeeccccccccccceeEEEcccccccccccCCCCc--eEEeecccceeecCCCCCCCeE
Q 037843 89 GPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEADGLLAGLSNP--FTAGRYHGLVIEKDSFRSDELE 164 (203)
Q Consensus 89 ~~~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~~~~--~~~~~~H~~~v~~~~l~~~~~~ 164 (203)
..++||| |+|||+|+.++||+|.+.. ..++|+..+.+... ++||+++++. +.++++|+|.+.. +|++++
T Consensus 84 ~~~iPILGIClG~QlLa~alGG~V~~~~-~~e~G~~~v~i~~~---~~Lf~~l~~~~~~~v~~~Hsd~V~~---lP~g~~ 156 (536)
T PLN02347 84 ERGVPVLGICYGMQLIVQKLGGEVKPGE-KQEYGRMEIRVVCG---SQLFGDLPSGETQTVWMSHGDEAVK---LPEGFE 156 (536)
T ss_pred hcCCcEEEECHHHHHHHHHcCCEEEecC-CcccceEEEEEcCC---ChhhhcCCCCceEEEEEEEEEEeee---CCCCCE
Confidence 4679999 9999999999999999886 57899988876432 6799999876 8899999999977 679999
Q ss_pred EEEEcCCCcEEEEEeCCCCcEEEEcCCCCCCCCCCCC
Q 037843 165 VTAWTEDGLIMAARHKKYKHLHGVQFHPESILTSEGK 201 (203)
Q Consensus 165 ~~a~s~~~~v~a~~~~~~~~i~gvQfHPE~~~~~~g~ 201 (203)
++|+++++.++++++.+.| +||+|||||+++++.|.
T Consensus 157 vlA~s~~~~iaai~~~~~~-i~GvQFHPE~~~t~~G~ 192 (536)
T PLN02347 157 VVAKSVQGAVVAIENRERR-IYGLQYHPEVTHSPKGM 192 (536)
T ss_pred EEEEeCCCcEEEEEECCCC-EEEEEccCCCCccchHH
Confidence 9999999999999998877 99999999999998874
No 22
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=100.00 E-value=3.5e-35 Score=229.43 Aligned_cols=174 Identities=33% Similarity=0.486 Sum_probs=142.2
Q ss_pred EEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHH--hccCCCEEEECCCCCCCCCcchHHHHHHHh-CCCC
Q 037843 16 VVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAEL--KRKKPRGVVISPGPGAPQESGISFRTVLEL-GPTM 92 (203)
Q Consensus 16 ~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l--~~~~~dgiil~GG~~~~~~~~~~~~~i~~~-~~~~ 92 (203)
||||+|++|++++.++++++ |+++++++++. +..+. ...++|||||+||++++++......+++.+ ++++
T Consensus 1 lviD~~~~~~~~l~~~l~~~------~~~~~v~~~~~-~~~~~~~~~~~~d~iii~Gg~~~~~d~~~~~~~i~~~~~~~~ 73 (192)
T PF00117_consen 1 LVIDNGDSFTHSLVRALREL------GIDVEVVRVDS-DFEEPLEDLDDYDGIIISGGPGSPYDIEGLIELIREARERKI 73 (192)
T ss_dssp EEEESSHTTHHHHHHHHHHT------TEEEEEEETTG-GHHHHHHHTTTSSEEEEECESSSTTSHHHHHHHHHHHHHTTS
T ss_pred CEEeCCHHHHHHHHHHHHHC------CCeEEEEECCC-chhhhhhhhcCCCEEEECCcCCccccccccccccccccccce
Confidence 68999999999999999999 99999998763 33332 234799999999999999855556666663 5789
Q ss_pred cee--ehhHHHHHHHhCCeeccccccccccc-eeEEEcccccccccccCCCCceEEeecccceeecCCCCCCCeEEEEEc
Q 037843 93 PLF--CMGLKCIGEALEGRLYVLLLVSCMGK-ALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWT 169 (203)
Q Consensus 93 Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~-~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s 169 (203)
|+| |+|||+|+.++|++|.+.......|+ ..+..+.. +++|.++++.+.++++|+|.|.+..++|++++++|++
T Consensus 74 PilGIC~G~Q~la~~~G~~v~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~~~~~~~H~~~v~~~~~~p~~~~~la~s 150 (192)
T PF00117_consen 74 PILGICLGHQILAHALGGKVVPSPEKPHHGGNIPISETPE---DPLFYGLPESFKAYQYHSDAVNPDDLLPEGFEVLASS 150 (192)
T ss_dssp EEEEETHHHHHHHHHTTHEEEEEESEEEEEEEEEEEEEEE---HGGGTTSTSEEEEEEEECEEEEEGHHHHTTEEEEEEE
T ss_pred EEEEEeehhhhhHHhcCCcccccccccccccccccccccc---cccccccccccccccccceeeeccccccccccccccc
Confidence 999 99999999999999998762344555 44444332 5899999999999999999998533346899999999
Q ss_pred CC-CcEEEEEeCCCCcEEEEcCCCCCCCCCCC
Q 037843 170 ED-GLIMAARHKKYKHLHGVQFHPESILTSEG 200 (203)
Q Consensus 170 ~~-~~v~a~~~~~~~~i~gvQfHPE~~~~~~g 200 (203)
++ +.++++.+.++| +||+|||||++.++.|
T Consensus 151 ~~~~~~~~~~~~~~~-i~g~QfHPE~~~~~~~ 181 (192)
T PF00117_consen 151 SDGCPIQAIRHKDNP-IYGVQFHPEFSSSPGG 181 (192)
T ss_dssp TTTTEEEEEEECTTS-EEEESSBTTSTTSTTH
T ss_pred ccccccccccccccE-EEEEecCCcCCCCCCc
Confidence 65 489999999987 9999999999998865
No 23
>PRK00074 guaA GMP synthase; Reviewed
Probab=100.00 E-value=2.5e-34 Score=253.61 Aligned_cols=173 Identities=26% Similarity=0.424 Sum_probs=149.0
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcch--HHHHHHHhC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGI--SFRTVLELG 89 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~--~~~~i~~~~ 89 (203)
+.+|+|||++++|++++.++++++ |+..++++++ .+.+++...++|||||+||+.++++.+. +.+.+ +.
T Consensus 3 ~~~i~vlD~Gsq~~~li~r~lrel------g~~~~v~p~~-~~~~~l~~~~~dgIIlsGGp~sv~~~~~p~~~~~i--~~ 73 (511)
T PRK00074 3 HDKILILDFGSQYTQLIARRVREL------GVYSEIVPYD-ISAEEIRAFNPKGIILSGGPASVYEEGAPRADPEI--FE 73 (511)
T ss_pred CCEEEEEECCCCcHHHHHHHHHHC------CCeEEEEECC-CCHHHHhccCCCEEEECCCCcccccCCCccccHHH--Hh
Confidence 467999999999999999999999 9999999875 5677887667899999999998876542 22222 34
Q ss_pred CCCcee--ehhHHHHHHHhCCeeccccccccccceeEEEcccccccccccCCCCceEEeecccceeecCCCCCCCeEEEE
Q 037843 90 PTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTA 167 (203)
Q Consensus 90 ~~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a 167 (203)
.++||| |+|||+|+.++||+|.+.. ..+.|+..+.++.+ ++||++++..+.++++|+|.|.. +|++++++|
T Consensus 74 ~~~PvLGIC~G~QlLa~~lGG~V~~~~-~~e~G~~~i~i~~~---~~Lf~~l~~~~~v~~~H~d~V~~---lp~g~~vlA 146 (511)
T PRK00074 74 LGVPVLGICYGMQLMAHQLGGKVERAG-KREYGRAELEVDND---SPLFKGLPEEQDVWMSHGDKVTE---LPEGFKVIA 146 (511)
T ss_pred CCCCEEEECHHHHHHHHHhCCeEEecC-CcccceEEEEEcCC---ChhhhcCCCceEEEEECCeEEEe---cCCCcEEEE
Confidence 679999 9999999999999999886 57889888877542 67999998889999999999987 789999999
Q ss_pred EcCCCcEEEEEeCCCCcEEEEcCCCCCCCCCCCC
Q 037843 168 WTEDGLIMAARHKKYKHLHGVQFHPESILTSEGK 201 (203)
Q Consensus 168 ~s~~~~v~a~~~~~~~~i~gvQfHPE~~~~~~g~ 201 (203)
+++++.++++++.+.+ +||+|||||++++++|.
T Consensus 147 ~s~~~~v~ai~~~~~~-i~GvQFHPE~~~t~~G~ 179 (511)
T PRK00074 147 STENCPIAAIANEERK-FYGVQFHPEVTHTPQGK 179 (511)
T ss_pred EeCCCCEEEEEeCCCC-EEEEeCCCCcCCchhHH
Confidence 9999999999988777 99999999999998774
No 24
>PLN02889 oxo-acid-lyase/anthranilate synthase
Probab=100.00 E-value=2.5e-34 Score=263.38 Aligned_cols=176 Identities=37% Similarity=0.597 Sum_probs=148.7
Q ss_pred CcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhc-----cCCCEEEECCCCCCCCC---cchHHHH
Q 037843 13 NPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKR-----KKPRGVVISPGPGAPQE---SGISFRT 84 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~-----~~~dgiil~GG~~~~~~---~~~~~~~ 84 (203)
+|||+|||||||++||+++|+++. |+.+.++++++.+.+++.. ..||+|||+||||+|.. .+...++
T Consensus 82 ~~iLlIDnyDSfTyNL~~~L~~~~-----g~~~~Vv~nd~~~~~~~~~~~~~~~~~d~IVlSPGPG~P~~~~d~Gi~~~~ 156 (918)
T PLN02889 82 VRTLLIDNYDSYTYNIYQELSIVN-----GVPPVVVRNDEWTWEEVYHYLYEEKAFDNIVISPGPGSPTCPADIGICLRL 156 (918)
T ss_pred ceEEEEeCCCchHHHHHHHHHHhc-----CCCEEEEeCCCCCHHHHHhhhhcccCCCEEEECCCCCCccchHHHHHHHHH
Confidence 579999999999999999998873 8888899888777777643 36899999999999964 3344566
Q ss_pred HHHhCCCCcee--ehhHHHHHHHhCCeeccccccccccc-eeEEEcccccccccccCCCC----ceEEeecccceeecCC
Q 037843 85 VLELGPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGK-ALVYYNEKEEADGLLAGLSN----PFTAGRYHGLVIEKDS 157 (203)
Q Consensus 85 i~~~~~~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~-~~i~~~~~~~~~~lf~~~~~----~~~~~~~H~~~v~~~~ 157 (203)
|.++ .++||| |||||+|+.++||+|.+.+ .++||. ..|.+.. ..+|++++. .|.+.+||+..|...+
T Consensus 157 i~~~-~~iPILGICLGhQ~i~~~~Gg~V~~~~-~~~HG~~s~I~h~~----~~lF~glp~~~~~~f~v~RYHSL~v~~~~ 230 (918)
T PLN02889 157 LLEC-RDIPILGVCLGHQALGYVHGARIVHAP-EPVHGRLSEIEHNG----CRLFDDIPSGRNSGFKVVRYHSLVIDAES 230 (918)
T ss_pred HHHh-CCCcEEEEcHHHHHHHHhcCceEEeCC-CceeeeeeeEeecC----chhhcCCCcCCCCCceEEeCCCcccccCC
Confidence 6654 469999 9999999999999999998 688998 6676653 579999986 5999999999997555
Q ss_pred CCCCCeEEEEEcCC-----------------------------------------------------CcEEEEEeCCCCc
Q 037843 158 FRSDELEVTAWTED-----------------------------------------------------GLIMAARHKKYKH 184 (203)
Q Consensus 158 l~~~~~~~~a~s~~-----------------------------------------------------~~v~a~~~~~~~~ 184 (203)
+ |++++++|++++ +.++|++|+.+|
T Consensus 231 l-P~~L~~~A~t~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viMairH~~~P- 308 (918)
T PLN02889 231 L-PKELVPIAWTSSSDTLSFLESQKSGLVPDAYESQIGQSGSSDPFSSKLKNGTSWPSSHSERMQNGKILMGIMHSTRP- 308 (918)
T ss_pred C-CCceEEEEEECCCcccccccccccccccccccccccccccccccccccccccccccccccccCCCCeeEEEEECCCc-
Confidence 4 589999998854 479999999998
Q ss_pred EEEEcCCCCCCCCCCCC
Q 037843 185 LHGVQFHPESILTSEGK 201 (203)
Q Consensus 185 i~gvQfHPE~~~~~~g~ 201 (203)
+||||||||...++.|.
T Consensus 309 ~~GVQfHPESi~t~~G~ 325 (918)
T PLN02889 309 HYGLQFHPESIATCYGR 325 (918)
T ss_pred eEEEEeCCccccCchhH
Confidence 99999999999999874
No 25
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=100.00 E-value=4.2e-33 Score=252.40 Aligned_cols=175 Identities=39% Similarity=0.650 Sum_probs=146.2
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcchHHHHHHH-hCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGISFRTVLE-LGP 90 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~-~~~ 90 (203)
+++|+|||++++|++++.++|++. |+.+.+++++ ...+.+...++|+|||+||||++.+.+. ..+|++ +..
T Consensus 516 ~~~IlVID~gds~~~~l~~~L~~~------G~~v~vv~~~-~~~~~~~~~~~DgLILsgGPGsp~d~~~-~~~I~~~~~~ 587 (717)
T TIGR01815 516 GRRILLVDHEDSFVHTLANYLRQT------GASVTTLRHS-HAEAAFDERRPDLVVLSPGPGRPADFDV-AGTIDAALAR 587 (717)
T ss_pred CCEEEEEECCChhHHHHHHHHHHC------CCeEEEEECC-CChhhhhhcCCCEEEEcCCCCCchhccc-HHHHHHHHHC
Confidence 578999999999999999999999 9999988865 2222333347899999999999987654 345555 567
Q ss_pred CCcee--ehhHHHHHHHhCCeeccccccccccc-eeEEEcccccccccccCCCCceEEeecccceeecCCCCCCCeEEEE
Q 037843 91 TMPLF--CMGLKCIGEALEGRLYVLLLVSCMGK-ALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTA 167 (203)
Q Consensus 91 ~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~-~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a 167 (203)
++|+| |+|||+|+.++||+|.+.+ .+++|+ ..+..... +++|.+++..+.+++||++.+.... +|+++.++|
T Consensus 588 ~iPvLGICLG~QlLa~a~GG~V~~~~-~p~~G~~~~V~~~~~---~~Lf~~lp~~~~v~~~HS~~~~~~~-LP~~~~vlA 662 (717)
T TIGR01815 588 GLPVFGVCLGLQGMVEAFGGALDVLP-EPVHGKASRIRVLGP---DALFAGLPERLTVGRYHSLFARRDR-LPAELTVTA 662 (717)
T ss_pred CCCEEEECHHHHHHhhhhCCEEEECC-CCeeCcceEEEECCC---ChhhhcCCCCCEEEEECCCCccccc-CCCCeEEEE
Confidence 89999 9999999999999999987 467885 67766543 6799999999999999999875434 468999999
Q ss_pred EcCCCcEEEEEeCCCCcEEEEcCCCCCCCCCCC
Q 037843 168 WTEDGLIMAARHKKYKHLHGVQFHPESILTSEG 200 (203)
Q Consensus 168 ~s~~~~v~a~~~~~~~~i~gvQfHPE~~~~~~g 200 (203)
+++++.++|+++++.| +||+|||||+..++.|
T Consensus 663 ~s~d~~v~Ai~~~~~~-i~GVQFHPEsi~T~sg 694 (717)
T TIGR01815 663 ESADGLIMAIEHRRLP-LAAVQFHPESIMTLDG 694 (717)
T ss_pred EeCCCcEEEEEECCCC-EEEEEeCCeeCCccCc
Confidence 9999999999999887 9999999999888765
No 26
>PRK13566 anthranilate synthase; Provisional
Probab=100.00 E-value=9.7e-33 Score=250.36 Aligned_cols=174 Identities=39% Similarity=0.629 Sum_probs=147.5
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcchHHHHHHH-hCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGISFRTVLE-LGP 90 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~-~~~ 90 (203)
.++|+|||++++|.+++.++++.. |+++.+++++ .+.+.+...++|+|||+||||++.+.+. ..+++. +++
T Consensus 526 g~~IlvID~~dsf~~~l~~~Lr~~------G~~v~vv~~~-~~~~~~~~~~~DgVVLsgGpgsp~d~~~-~~lI~~a~~~ 597 (720)
T PRK13566 526 GKRVLLVDHEDSFVHTLANYFRQT------GAEVTTVRYG-FAEEMLDRVNPDLVVLSPGPGRPSDFDC-KATIDAALAR 597 (720)
T ss_pred CCEEEEEECCCchHHHHHHHHHHC------CCEEEEEECC-CChhHhhhcCCCEEEECCCCCChhhCCc-HHHHHHHHHC
Confidence 578999999999999999999999 9999999886 3444444457999999999999877553 456666 467
Q ss_pred CCcee--ehhHHHHHHHhCCeeccccccccccc-eeEEEcccccccccccCCCCceEEeecccceeecCCCCCCCeEEEE
Q 037843 91 TMPLF--CMGLKCIGEALEGRLYVLLLVSCMGK-ALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTA 167 (203)
Q Consensus 91 ~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~-~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a 167 (203)
++||| |+|||+|+.++||++.+.. .+.+|+ .+|.+... ++||++++..+.++++|++.+....+ |++++++|
T Consensus 598 ~iPILGIClG~QlLa~alGG~V~~~~-~~~~G~~~~V~v~~~---~~Lf~~lp~~~~v~~~Hs~~v~~~~L-p~~~~vlA 672 (720)
T PRK13566 598 NLPIFGVCLGLQAIVEAFGGELGQLA-YPMHGKPSRIRVRGP---GRLFSGLPEEFTVGRYHSLFADPETL-PDELLVTA 672 (720)
T ss_pred CCcEEEEehhHHHHHHHcCCEEEECC-CCccCCceEEEECCC---CchhhcCCCCCEEEEecceeEeeccC-CCceEEEE
Confidence 89999 9999999999999999987 455665 77877654 57999999999999999998865444 58999999
Q ss_pred EcCCCcEEEEEeCCCCcEEEEcCCCCCCCCCC
Q 037843 168 WTEDGLIMAARHKKYKHLHGVQFHPESILTSE 199 (203)
Q Consensus 168 ~s~~~~v~a~~~~~~~~i~gvQfHPE~~~~~~ 199 (203)
+++++.+++++++++| +||+|||||+..+..
T Consensus 673 ~s~dg~V~ai~~~~~p-i~GVQFHPE~i~t~~ 703 (720)
T PRK13566 673 ETEDGVIMAIEHKTLP-VAAVQFHPESIMTLG 703 (720)
T ss_pred EeCCCcEEEEEECCCC-EEEEeccCeeCCcCC
Confidence 9999999999999887 999999999988744
No 27
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=100.00 E-value=1e-31 Score=207.71 Aligned_cols=162 Identities=29% Similarity=0.469 Sum_probs=128.0
Q ss_pred EEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcchHHHHHHH-hCCCCc
Q 037843 15 IVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGISFRTVLE-LGPTMP 93 (203)
Q Consensus 15 i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~-~~~~~P 93 (203)
|+|||++++ +++++++++. |+.+.+++++ .+.+++...++|||||+||++++.+.....+++++ +++++|
T Consensus 1 i~i~d~g~~--~~~~~~l~~~------G~~~~~~~~~-~~~~~~~~~~~dgiil~GG~~~~~~~~~~~~~~~~~~~~~~P 71 (178)
T cd01744 1 VVVIDFGVK--HNILRELLKR------GCEVTVVPYN-TDAEEILKLDPDGIFLSNGPGDPALLDEAIKTVRKLLGKKIP 71 (178)
T ss_pred CEEEecCcH--HHHHHHHHHC------CCeEEEEECC-CCHHHHhhcCCCEEEECCCCCChhHhHHHHHHHHHHHhCCCC
Confidence 689999986 4789999998 9999999876 45555554479999999999988766556667776 467799
Q ss_pred ee--ehhHHHHHHHhCCeeccccccccccc-eeEEEcccccccccccCCCCceEEeecccceeecCCCCCCCeEEEEEc-
Q 037843 94 LF--CMGLKCIGEALEGRLYVLLLVSCMGK-ALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWT- 169 (203)
Q Consensus 94 il--ClG~Qlla~a~gg~v~~~~~~~~~g~-~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s- 169 (203)
+| |+|||+|+.++||++.+... ..+|. +++..... ...+.++++|++.+.++++ |++++++|++
T Consensus 72 vlGIC~G~Q~l~~~~Gg~v~~~~~-~~~g~~~~v~~~~~----------~~~~~v~~~H~~~v~~~~l-p~~~~v~a~s~ 139 (178)
T cd01744 72 IFGICLGHQLLALALGAKTYKMKF-GHRGSNHPVKDLIT----------GRVYITSQNHGYAVDPDSL-PGGLEVTHVNL 139 (178)
T ss_pred EEEECHHHHHHHHHcCCceecCCC-CCCCCceeeEEcCC----------CCcEEEEcCceEEEccccc-CCceEEEEEEC
Confidence 99 99999999999999998652 23343 45543321 1235678899999975444 5899999998
Q ss_pred CCCcEEEEEeCCCCcEEEEcCCCCCCCCC
Q 037843 170 EDGLIMAARHKKYKHLHGVQFHPESILTS 198 (203)
Q Consensus 170 ~~~~v~a~~~~~~~~i~gvQfHPE~~~~~ 198 (203)
+++.+++++++++| +||+|||||+..++
T Consensus 140 ~~~~i~a~~~~~~~-i~GvQfHPE~~~~~ 167 (178)
T cd01744 140 NDGTVEGIRHKDLP-VFSVQFHPEASPGP 167 (178)
T ss_pred CCCcEEEEEECCCC-eEEEeeCCCCCCCC
Confidence 57899999999888 99999999998764
No 28
>PRK09065 glutamine amidotransferase; Provisional
Probab=100.00 E-value=2.2e-32 Score=220.14 Aligned_cols=172 Identities=23% Similarity=0.217 Sum_probs=136.0
Q ss_pred CCcEEEEeC----------CchHHHHHHHHHHHhhhhhcCCceEEEEeCCcc-cHHHHhccCCCEEEECCCCCCCCCcch
Q 037843 12 KNPIVVIDN----------YDSFTYNLCQYMGELELELSQGYHFEVYRNDEL-TVAELKRKKPRGVVISPGPGAPQESGI 80 (203)
Q Consensus 12 ~~~i~iid~----------~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~-~~~~l~~~~~dgiil~GG~~~~~~~~~ 80 (203)
|++|+|+.. +++|...+.+.++.. |.++.+++.... ...++. ++|||||+||+.+.++...
T Consensus 1 ~~~i~iL~~~~~~~~~~~~~g~~~~~~~~~~~~~------~~~~~~~~~~~~~~~p~~~--~~dgvvi~Gg~~~~~d~~~ 72 (237)
T PRK09065 1 VKPLLIIQTGTPPPSIRARYGDFPHWIRVALGLA------EQPVVVVRVFAGEPLPAPD--DFAGVIITGSWAMVTDRLD 72 (237)
T ss_pred CCcEEEEECCCCChhHHhhcCCHHHHHHHHhccC------CceEEEEeccCCCCCCChh--hcCEEEEeCCCcccCCCch
Confidence 456777733 344556666666666 888887765421 122333 6899999999999877543
Q ss_pred H----HHHHHH-hCCCCcee--ehhHHHHHHHhCCeeccccccccccceeEEEcccccccccccCCCCceEEeeccccee
Q 037843 81 S----FRTVLE-LGPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEADGLLAGLSNPFTAGRYHGLVI 153 (203)
Q Consensus 81 ~----~~~i~~-~~~~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v 153 (203)
+ .++|++ +..++||| |+|||+|+.++||+|.+.+.+.+.|+..+.++..+..+++|+++++.+.++++|++.|
T Consensus 73 w~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~alGg~V~~~~~g~e~G~~~v~~~~~~~~~~l~~~~~~~~~v~~~H~d~v 152 (237)
T PRK09065 73 WSERTADWLRQAAAAGMPLLGICYGHQLLAHALGGEVGYNPAGRESGTVTVELHPAAADDPLFAGLPAQFPAHLTHLQSV 152 (237)
T ss_pred hHHHHHHHHHHHHHCCCCEEEEChhHHHHHHHcCCccccCCCCCccceEEEEEccccccChhhhcCCccCcEeeehhhhh
Confidence 2 455666 46789999 9999999999999999876567889989988776666789999999999999999999
Q ss_pred ecCCCCCCCeEEEEEcCCCcEEEEEeCCCCcEEEEcCCCCCCC
Q 037843 154 EKDSFRSDELEVTAWTEDGLIMAARHKKYKHLHGVQFHPESIL 196 (203)
Q Consensus 154 ~~~~l~~~~~~~~a~s~~~~v~a~~~~~~~~i~gvQfHPE~~~ 196 (203)
.. +|++++++|+++++.++++++++ ++||+|||||++.
T Consensus 153 ~~---lp~~~~~la~s~~~~iqa~~~~~--~i~gvQfHPE~~~ 190 (237)
T PRK09065 153 LR---LPPGAVVLARSAQDPHQAFRYGP--HAWGVQFHPEFTA 190 (237)
T ss_pred hh---CCCCCEEEEcCCCCCeeEEEeCC--CEEEEEeCCcCCH
Confidence 76 68999999999999999999976 4999999999864
No 29
>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)
Probab=100.00 E-value=1.2e-31 Score=227.92 Aligned_cols=166 Identities=25% Similarity=0.391 Sum_probs=138.3
Q ss_pred CcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCC
Q 037843 13 NPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGISFRTVLELGPTM 92 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~~~~~~ 92 (203)
.+|+++|++. .+++.++|+++ |+.++++|++ .+.+++.+.++||||||||||+|.+.....+.++++..++
T Consensus 241 ~~IvviD~G~--K~nIlr~L~~~------G~~v~VvP~~-~~~~ei~~~~pDGIiLSnGPGDP~~~~~~ie~ik~l~~~i 311 (415)
T PLN02771 241 YHVIAYDFGI--KHNILRRLASY------GCKITVVPST-WPASEALKMKPDGVLFSNGPGDPSAVPYAVETVKELLGKV 311 (415)
T ss_pred CEEEEECCCh--HHHHHHHHHHc------CCeEEEECCC-CCHHHHhhcCCCEEEEcCCCCChhHhhHHHHHHHHHHhCC
Confidence 5899999875 89999999999 9999999986 5677877778999999999999987777777777754579
Q ss_pred cee--ehhHHHHHHHhCCeeccccccccccceeEEEcccccccccccCCCCceEEeecccceeecCCCCCCCeEEEEEc-
Q 037843 93 PLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWT- 169 (203)
Q Consensus 93 Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s- 169 (203)
||| |||||+|+.++||++.+++.+++.+++++.....+ ....+.++|+|.|.++++ |+++++++.+
T Consensus 312 PIlGICLGhQlLa~AlGGkv~K~~~Gh~G~n~pV~~~~~~----------~v~itsqnHg~aVd~~sL-p~~~~vt~~nl 380 (415)
T PLN02771 312 PVFGICMGHQLLGQALGGKTFKMKFGHHGGNHPVRNNRTG----------RVEISAQNHNYAVDPASL-PEGVEVTHVNL 380 (415)
T ss_pred CEEEEcHHHHHHHHhcCCeEEECCCCcccceEEEEECCCC----------CEEEEecCHHHhhccccC-CCceEEEEEeC
Confidence 999 99999999999999999886554445777654321 113567899999976665 5899999987
Q ss_pred CCCcEEEEEeCCCCcEEEEcCCCCCCCCCC
Q 037843 170 EDGLIMAARHKKYKHLHGVQFHPESILTSE 199 (203)
Q Consensus 170 ~~~~v~a~~~~~~~~i~gvQfHPE~~~~~~ 199 (203)
+|+.+++++++++| ++|+|||||....|.
T Consensus 381 nDgtvegi~~~~~p-i~gVQFHPEa~pgp~ 409 (415)
T PLN02771 381 NDGSCAGLAFPALN-VMSLQYHPEASPGPH 409 (415)
T ss_pred CCCcEEEEEECCCC-EEEEEcCCCCCCCCC
Confidence 68999999999998 999999999987664
No 30
>PRK07053 glutamine amidotransferase; Provisional
Probab=99.98 E-value=1.3e-31 Score=215.09 Aligned_cols=172 Identities=21% Similarity=0.228 Sum_probs=138.4
Q ss_pred CCCcEEEEeCCchH-HHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc---h---HHH
Q 037843 11 DKNPIVVIDNYDSF-TYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG---I---SFR 83 (203)
Q Consensus 11 ~~~~i~iid~~~~~-~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~---~---~~~ 83 (203)
||++|+||.+...- ..++.+++++. |..+.+++.+..........++|+|||+||+.++++.. . ..+
T Consensus 1 ~m~~ilviqh~~~e~~g~i~~~L~~~------g~~~~v~~~~~~~~~~~~~~~~d~lii~Ggp~~~~d~~~~p~~~~~~~ 74 (234)
T PRK07053 1 MMKTAVAIRHVAFEDLGSFEQVLGAR------GYRVRYVDVGVDDLETLDALEPDLLVVLGGPIGVYDDELYPFLAPEIA 74 (234)
T ss_pred CCceEEEEECCCCCCChHHHHHHHHC------CCeEEEEecCCCccCCCCccCCCEEEECCCCCCCCCCCcCCcHHHHHH
Confidence 57889999876533 67899999998 99999887642211011122689999999999887643 2 346
Q ss_pred HHHH-hCCCCcee--ehhHHHHHHHhCCeeccccccccccceeEEEcccccccccccCCCCceEEeecccceeecCCCCC
Q 037843 84 TVLE-LGPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRS 160 (203)
Q Consensus 84 ~i~~-~~~~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~ 160 (203)
+|++ +..++|+| |+|||+|+.++||+|.+.. ..+.|+.+|.++..+..++++ +++..+.++++|++.+. +|
T Consensus 75 ~i~~~~~~~~PvlGIC~G~Qlla~alGg~V~~~~-~~e~G~~~i~~t~~g~~~pl~-~~~~~~~~~~~H~d~~~----lP 148 (234)
T PRK07053 75 LLRQRLAAGLPTLGICLGAQLIARALGARVYPGG-QKEIGWAPLTLTDAGRASPLR-HLGAGTPVLHWHGDTFD----LP 148 (234)
T ss_pred HHHHHHHCCCCEEEECccHHHHHHHcCCcEecCC-CCeEeEEEEEEeccccCChhh-cCCCcceEEEEeCCEEe----cC
Confidence 6666 46789999 9999999999999999875 688999999988776666664 67778899999999985 57
Q ss_pred CCeEEEEEcCCCcEEEEEeCCCCcEEEEcCCCCCCC
Q 037843 161 DELEVTAWTEDGLIMAARHKKYKHLHGVQFHPESIL 196 (203)
Q Consensus 161 ~~~~~~a~s~~~~v~a~~~~~~~~i~gvQfHPE~~~ 196 (203)
++++++|+|+.|.+|+++..+ ++||+|||||++.
T Consensus 149 ~ga~~La~s~~~~~qaf~~g~--~~~g~QfHpE~~~ 182 (234)
T PRK07053 149 EGATLLASTPACRHQAFAWGN--HVLALQFHPEARE 182 (234)
T ss_pred CCCEEEEcCCCCCeeEEEeCC--CEEEEeeCccCCH
Confidence 999999999999999999865 5999999999875
No 31
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=99.98 E-value=3.8e-31 Score=223.31 Aligned_cols=166 Identities=29% Similarity=0.451 Sum_probs=134.8
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHh-CC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGISFRTVLEL-GP 90 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~~-~~ 90 (203)
..+|++||++ +.+++.++|++. |+.+.+++++ .+.+++...++|||||||||++|.+.....++++++ +.
T Consensus 177 ~~~I~viD~G--~k~nivr~L~~~------G~~v~vvp~~-~~~~~i~~~~~DGIvLSgGPgdp~~~~~~~~~i~~~~~~ 247 (360)
T PRK12564 177 KYKVVAIDFG--VKRNILRELAER------GCRVTVVPAT-TTAEEILALNPDGVFLSNGPGDPAALDYAIEMIRELLEK 247 (360)
T ss_pred CCEEEEEeCC--cHHHHHHHHHHC------CCEEEEEeCC-CCHHHHHhcCCCEEEEeCCCCChHHHHHHHHHHHHHHHc
Confidence 4689999997 478999999999 9999999986 567777666799999999999987655556667764 56
Q ss_pred CCcee--ehhHHHHHHHhCCeeccccccccccc-eeEEEcccccccccccCCCCceEEeecccceeecCCCCCCCeEEEE
Q 037843 91 TMPLF--CMGLKCIGEALEGRLYVLLLVSCMGK-ALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTA 167 (203)
Q Consensus 91 ~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~-~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a 167 (203)
++|+| |+|||+|+.++||++.+++.++ +|. +++..... ...+.+.++|+|+|+++++ |+++++++
T Consensus 248 ~~PilGIClG~QlLa~a~Gg~v~kl~~gh-~G~~~pv~~~~~----------~~~~its~~H~~~V~~~~l-p~~l~v~a 315 (360)
T PRK12564 248 KIPIFGICLGHQLLALALGAKTYKMKFGH-RGANHPVKDLET----------GKVEITSQNHGFAVDEDSL-PANLEVTH 315 (360)
T ss_pred CCeEEEECHHHHHHHHHhCCcEeccCCCc-cCCceeeEECCC----------CcEEEEecCcccEEccccc-CCceEEEE
Confidence 89999 9999999999999999987443 343 66655432 1235677899999976555 58899999
Q ss_pred Ec-CCCcEEEEEeCCCCcEEEEcCCCCCCCCCC
Q 037843 168 WT-EDGLIMAARHKKYKHLHGVQFHPESILTSE 199 (203)
Q Consensus 168 ~s-~~~~v~a~~~~~~~~i~gvQfHPE~~~~~~ 199 (203)
++ +++.+++++++++| +||+|||||+...+.
T Consensus 316 ~~~~Dg~iegi~~~~~p-i~gVQfHPE~~~gp~ 347 (360)
T PRK12564 316 VNLNDGTVEGLRHKDLP-AFSVQYHPEASPGPH 347 (360)
T ss_pred EeCCCCcEEEEEECCCC-EEEEEeCCcCCCCCC
Confidence 98 68899999999998 999999999988664
No 32
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit. This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.
Probab=99.98 E-value=3.3e-31 Score=223.34 Aligned_cols=167 Identities=27% Similarity=0.431 Sum_probs=133.9
Q ss_pred CcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCC
Q 037843 13 NPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGISFRTVLELGPTM 92 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~~~~~~ 92 (203)
++|++||++ +.+++.++|++. |+.+.+++++ .+.+++....+|||||+|||++|.+.....++++++.+++
T Consensus 174 ~~i~viD~G--~k~ni~~~L~~~------G~~v~vvp~~-~~~~~i~~~~pDGIiLSgGPgdp~~~~~~i~~i~~~~~~~ 244 (358)
T TIGR01368 174 KRVVVIDFG--VKQNILRRLVKR------GCEVTVVPYD-TDAEEIKKYNPDGIFLSNGPGDPAAVEPAIETIRKLLEKI 244 (358)
T ss_pred cEEEEEeCC--cHHHHHHHHHHC------CCEEEEEcCC-CCHHHHHhhCCCEEEECCCCCCHHHHHHHHHHHHHHHcCC
Confidence 589999996 568999999999 9999999876 5677776656899999999999876555566677743389
Q ss_pred cee--ehhHHHHHHHhCCeeccccccccccceeEEEcccccccccccCCCCceEEeecccceeecCCCCCCCeEEEEEc-
Q 037843 93 PLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWT- 169 (203)
Q Consensus 93 Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s- 169 (203)
||| |+|||+|+.++||++.++..++....+++..... . ..+.+.++|+++|.+++++.+++++++++
T Consensus 245 PILGIClG~QlLa~a~Gg~v~kl~~gh~G~nhpV~~~~~---~-------~v~itsqnH~~aV~~~~l~~~~l~vta~~~ 314 (358)
T TIGR01368 245 PIFGICLGHQLLALAFGAKTYKMKFGHRGGNHPVKDLIT---G-------RVEITSQNHGYAVDPDSLPAGDLEVTHVNL 314 (358)
T ss_pred CEEEECHHHHHHHHHhCCceeccCcCcCCCceeeEECCC---C-------cEEEeecCCCcEEcccccCCCceEEEEEEC
Confidence 999 9999999999999999987443333366655332 1 12455689999998766655789999998
Q ss_pred CCCcEEEEEeCCCCcEEEEcCCCCCCCCCC
Q 037843 170 EDGLIMAARHKKYKHLHGVQFHPESILTSE 199 (203)
Q Consensus 170 ~~~~v~a~~~~~~~~i~gvQfHPE~~~~~~ 199 (203)
+|+.+++++++++| +||+|||||+...+.
T Consensus 315 nDg~Vegi~h~~~p-i~gVQfHPE~~~gp~ 343 (358)
T TIGR01368 315 NDGTVEGIRHKDLP-VFSVQYHPEASPGPH 343 (358)
T ss_pred CCCcEEEEEECCCC-EEEEEECCCCCCCCC
Confidence 68899999999998 999999999987654
No 33
>PRK06490 glutamine amidotransferase; Provisional
Probab=99.98 E-value=2.8e-31 Score=213.77 Aligned_cols=167 Identities=22% Similarity=0.230 Sum_probs=132.7
Q ss_pred CCCcEEEEeCCc-hHHHHHHHHHHHhhhhhcCCceEEEEeCCc--ccHHHHhccCCCEEEECCCCCCCCCcchH----HH
Q 037843 11 DKNPIVVIDNYD-SFTYNLCQYMGELELELSQGYHFEVYRNDE--LTVAELKRKKPRGVVISPGPGAPQESGIS----FR 83 (203)
Q Consensus 11 ~~~~i~iid~~~-~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~--~~~~~l~~~~~dgiil~GG~~~~~~~~~~----~~ 83 (203)
.+++|+||++.+ ++..++.++|++. |..+.++++.. ..++++. ++||+||+||++++++...+ .+
T Consensus 6 ~~~~vlvi~h~~~~~~g~l~~~l~~~------g~~~~v~~~~~~~~~p~~l~--~~dgvii~Ggp~~~~d~~~wi~~~~~ 77 (239)
T PRK06490 6 DKRPVLIVLHQERSTPGRVGQLLQER------GYPLDIRRPRLGDPLPDTLE--DHAGAVIFGGPMSANDPDDFIRREID 77 (239)
T ss_pred CCceEEEEecCCCCCChHHHHHHHHC------CCceEEEeccCCCCCCCccc--ccCEEEEECCCCCCCCCchHHHHHHH
Confidence 468899996655 7899999999999 99998876531 1223343 68999999999999876643 45
Q ss_pred HHHH-hCCCCcee--ehhHHHHHHHhCCeeccccccc-cccceeEEEcccccccccccCCCCceEEeecccceeecCCCC
Q 037843 84 TVLE-LGPTMPLF--CMGLKCIGEALEGRLYVLLLVS-CMGKALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFR 159 (203)
Q Consensus 84 ~i~~-~~~~~Pil--ClG~Qlla~a~gg~v~~~~~~~-~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~ 159 (203)
+|++ +..++|+| |+|||+|+.++||+|.+.+.+. +.|+..+.++.. .+++.+++ ..++++|++.+ . +
T Consensus 78 ~i~~~~~~~~PvLGIC~G~Qlla~alGG~V~~~~~G~~e~G~~~i~~~~~---~~~~~~~~--~~~~~~H~d~~-~---l 148 (239)
T PRK06490 78 WISVPLKENKPFLGICLGAQMLARHLGARVAPHPDGRVEIGYYPLRPTEA---GRALMHWP--EMVYHWHREGF-D---L 148 (239)
T ss_pred HHHHHHHCCCCEEEECHhHHHHHHHcCCEeecCCCCCCccceEEeEECCC---cccccCCC--CEEEEECCccc-c---C
Confidence 5665 46789999 9999999999999999986444 788888888764 33455554 45888999984 3 6
Q ss_pred CCCeEEEEEcCCCcEEEEEeCCCCcEEEEcCCCCCCC
Q 037843 160 SDELEVTAWTEDGLIMAARHKKYKHLHGVQFHPESIL 196 (203)
Q Consensus 160 ~~~~~~~a~s~~~~v~a~~~~~~~~i~gvQfHPE~~~ 196 (203)
|++++++|+|++|.++++++.+ ++||+|||||++.
T Consensus 149 P~~~~~LA~s~~~~~qa~~~~~--~v~g~QfHPE~~~ 183 (239)
T PRK06490 149 PAGAELLATGDDFPNQAFRYGD--NAWGLQFHPEVTR 183 (239)
T ss_pred CCCCEEEEeCCCCCeEEEEeCC--CEEEEeeCccCCH
Confidence 7999999999999999999976 4999999999883
No 34
>PRK07567 glutamine amidotransferase; Provisional
Probab=99.97 E-value=2.2e-31 Score=214.86 Aligned_cols=172 Identities=20% Similarity=0.235 Sum_probs=133.8
Q ss_pred CCcEEEEeCCchHH---HHHHHHHHHhhhhhcCCce---EEEEeCCccc--HHHHhccCCCEEEECCCCCCCCCc----c
Q 037843 12 KNPIVVIDNYDSFT---YNLCQYMGELELELSQGYH---FEVYRNDELT--VAELKRKKPRGVVISPGPGAPQES----G 79 (203)
Q Consensus 12 ~~~i~iid~~~~~~---~~l~~~l~~~~~~~~~g~~---~~v~~~~~~~--~~~l~~~~~dgiil~GG~~~~~~~----~ 79 (203)
|++|+|+.+..... ..+.++++.. |.. +.+++.+... +.++. +||||||+||++++++. .
T Consensus 1 m~~ililq~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~--~~dgvIi~Gg~~~~~d~~~~~~ 72 (242)
T PRK07567 1 MKPFLLLSPRPEDEAADAEYAAFLRYT------GLDPAELRRIRLDREPLPDLDLD--DYSGVIVGGSPFNVSDPAESKS 72 (242)
T ss_pred CCcEEEEecCCCcccccchHHHHHHhc------CCCccceEEEecccCCCCCCCHh--hccEEEEcCCCCcCCCCCCccc
Confidence 45699998776532 4577777776 654 5555443221 11333 68999999999999875 1
Q ss_pred hH----H----HHHHH-hCCCCcee--ehhHHHHHHHhCCeeccccccccccceeEEEcccccccccccCCCCceEEeec
Q 037843 80 IS----F----RTVLE-LGPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEADGLLAGLSNPFTAGRY 148 (203)
Q Consensus 80 ~~----~----~~i~~-~~~~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~~ 148 (203)
.+ . ++++. ...++||| |+|||+|+.++||+|.+.. +.+.|+.++.++..+..+++|.+++..+.++++
T Consensus 73 pw~~~~~~~i~~~i~~~~~~~~PvLGIC~G~Qlla~a~GG~V~~~~-g~e~G~~~v~l~~~g~~~~l~~~~~~~~~~~~~ 151 (242)
T PRK07567 73 PWQRRVEAELSGLLDEVVARDFPFLGACYGVGTLGHHQGGVVDRTY-GEPVGAVTVSLTDAGRADPLLAGLPDTFTAFVG 151 (242)
T ss_pred hHHHHHHHHHHHHHHHHHhcCCCEEEEchhHHHHHHHcCCEEecCC-CCcCccEEEEECCccCCChhhcCCCCceEEEee
Confidence 11 1 22332 26789999 9999999999999999843 678899999988766668899999999999999
Q ss_pred ccceeecCCCCCCCeEEEEEcCCCcEEEEEeCCCCcEEEEcCCCCCCCC
Q 037843 149 HGLVIEKDSFRSDELEVTAWTEDGLIMAARHKKYKHLHGVQFHPESILT 197 (203)
Q Consensus 149 H~~~v~~~~l~~~~~~~~a~s~~~~v~a~~~~~~~~i~gvQfHPE~~~~ 197 (203)
|++.|.. +|++++++|+++++.+|++++.+ ++||+|||||++..
T Consensus 152 H~d~V~~---lp~~~~vlA~s~~~~vqa~~~~~--~~~gvQfHPE~~~~ 195 (242)
T PRK07567 152 HKEAVSA---LPPGAVLLATSPTCPVQMFRVGE--NVYATQFHPELDAD 195 (242)
T ss_pred hhhhhhh---CCCCCEEEEeCCCCCEEEEEeCC--CEEEEEeCCcCCHH
Confidence 9999976 68999999999999999999876 49999999998753
No 35
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=99.97 E-value=9.6e-31 Score=221.67 Aligned_cols=166 Identities=23% Similarity=0.427 Sum_probs=133.3
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHh-CC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGISFRTVLEL-GP 90 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~~-~~ 90 (203)
.++|+|||+ ++++++.++|+++ |+.+.+++++ .+.+++...++||||||||||+|.+...+.+.++++ ..
T Consensus 192 ~~~I~viD~--g~k~ni~~~L~~~------G~~v~vvp~~-~~~~~i~~~~~dgIilSgGPg~p~~~~~~i~~i~~~~~~ 262 (382)
T CHL00197 192 QLKIIVIDF--GVKYNILRRLKSF------GCSITVVPAT-SPYQDILSYQPDGILLSNGPGDPSAIHYGIKTVKKLLKY 262 (382)
T ss_pred CCEEEEEEC--CcHHHHHHHHHHC------CCeEEEEcCC-CCHHHHhccCCCEEEEcCCCCChhHHHHHHHHHHHHHhC
Confidence 478999999 5788999999999 9999999876 667777767899999999999998766666666664 56
Q ss_pred CCcee--ehhHHHHHHHhCCeeccccccccccceeEEEcccccccccccCCCCce-EEeecccceeecCCCCCCCeEEEE
Q 037843 91 TMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEADGLLAGLSNPF-TAGRYHGLVIEKDSFRSDELEVTA 167 (203)
Q Consensus 91 ~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~~~~~-~~~~~H~~~v~~~~l~~~~~~~~a 167 (203)
++||| |||||+|+.++||++.++..++..+.+++.. ...+ ...++|++.+..++++..++.+++
T Consensus 263 ~~PilGIClGhQlLa~a~Gg~v~k~~~Gh~g~n~pv~~-------------~~~v~itsq~H~~~v~~~sv~~~~~~vt~ 329 (382)
T CHL00197 263 NIPIFGICMGHQILSLALEAKTFKLKFGHRGLNHPSGL-------------NQQVEITSQNHGFAVNLESLAKNKFYITH 329 (382)
T ss_pred CCCEEEEcHHHHHHHHHhCCEEeccCCCCCCCCEecCC-------------CCceEEeecchheEeeccccCCCCcEEEE
Confidence 89999 9999999999999999987444333344321 1222 334799999987766544788988
Q ss_pred Ec-CCCcEEEEEeCCCCcEEEEcCCCCCCCCCCC
Q 037843 168 WT-EDGLIMAARHKKYKHLHGVQFHPESILTSEG 200 (203)
Q Consensus 168 ~s-~~~~v~a~~~~~~~~i~gvQfHPE~~~~~~g 200 (203)
.+ +++.+++++++++| +||+|||||+...+.+
T Consensus 330 ~~~nDgtvegi~h~~~p-i~gVQFHPE~~~gp~d 362 (382)
T CHL00197 330 FNLNDGTVAGISHSPKP-YFSVQYHPEASPGPHD 362 (382)
T ss_pred EECCCCCEEEEEECCCC-cEEEeeCCCCCCCCCC
Confidence 86 68889999999998 9999999999887764
No 36
>PRK05665 amidotransferase; Provisional
Probab=99.97 E-value=1.3e-30 Score=209.80 Aligned_cols=171 Identities=13% Similarity=0.045 Sum_probs=129.0
Q ss_pred CcEEEEeCCc----------hHHHHHHHHHHHhhhhhcCCceEEEEeCCccc-HHHHhccCCCEEEECCCCCCCCCcchH
Q 037843 13 NPIVVIDNYD----------SFTYNLCQYMGELELELSQGYHFEVYRNDELT-VAELKRKKPRGVVISPGPGAPQESGIS 81 (203)
Q Consensus 13 ~~i~iid~~~----------~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~-~~~l~~~~~dgiil~GG~~~~~~~~~~ 81 (203)
+||+||..+. +|..++.+++... ....++.++...... +.++. ++|||||+||+.++++...+
T Consensus 3 mki~IL~~~~~~~~~~~~~g~~~~~~~~ll~~~----~~~~~~~~~~~~~~~~p~~~~--~~dgiiitGs~~~v~~~~pw 76 (240)
T PRK05665 3 LRICILETDVLRPELVAQYQGYGRMFEQLFARQ----PIAAEFVVYNVVQGDYPADDE--KFDAYLVTGSKADSFGTDPW 76 (240)
T ss_pred eEEEEEECCCCCHHHHHHhCCHHHHHHHHHHhC----CCCceEEEEeccCCCCCCCcc--cCCEEEECCCCCCccccchH
Confidence 3599996654 2334455555554 112344544322111 22222 68999999999998875543
Q ss_pred ----HHHHHH-hCCCCcee--ehhHHHHHHHhCCeeccccccccccceeEEEcccccccccccCCCCceEEeecccceee
Q 037843 82 ----FRTVLE-LGPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIE 154 (203)
Q Consensus 82 ----~~~i~~-~~~~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~ 154 (203)
.++|++ +.+++|+| |||||+||.++||+|.+.+.+++.|...+.++.. .++|.++++.+.++++|++.|.
T Consensus 77 i~~l~~~i~~~~~~~~PilGIC~GhQlla~AlGG~V~~~~~G~e~G~~~~~~~~~---~~~~~~~~~~~~~~~~H~D~V~ 153 (240)
T PRK05665 77 IQTLKTYLLKLYERGDKLLGVCFGHQLLALLLGGKAERASQGWGVGIHRYQLAAH---APWMSPAVTELTLLISHQDQVT 153 (240)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeHHHHHHHHHhCCEEEeCCCCcccceEEEEecCC---CccccCCCCceEEEEEcCCeee
Confidence 455666 46789999 9999999999999999987667778777776543 5689888899999999999998
Q ss_pred cCCCCCCCeEEEEEcCCCcEEEEEeCCCCcEEEEcCCCCCCCC
Q 037843 155 KDSFRSDELEVTAWTEDGLIMAARHKKYKHLHGVQFHPESILT 197 (203)
Q Consensus 155 ~~~l~~~~~~~~a~s~~~~v~a~~~~~~~~i~gvQfHPE~~~~ 197 (203)
. +|++++++|+|+.|.+|+++..+ ++||+|||||++..
T Consensus 154 ~---LP~ga~~La~s~~~~~q~~~~~~--~~~g~QfHPE~~~~ 191 (240)
T PRK05665 154 A---LPEGATVIASSDFCPFAAYHIGD--QVLCFQGHPEFVHD 191 (240)
T ss_pred e---CCCCcEEEEeCCCCcEEEEEeCC--CEEEEecCCcCcHH
Confidence 7 78999999999999999999876 59999999998763
No 37
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed
Probab=99.97 E-value=1.6e-30 Score=218.97 Aligned_cols=167 Identities=27% Similarity=0.415 Sum_probs=134.8
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGISFRTVLELGPT 91 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~~~~~ 91 (203)
.++|++||++ +..++.++|++. |+.+.+++++ .+.+++...++|||||+|||++|.+.....+.++++...
T Consensus 167 ~~~V~viD~G--~k~ni~~~L~~~------G~~v~vvp~~-~~~~~i~~~~~DGIiLsgGPgdp~~~~~~~~~i~~~~~~ 237 (354)
T PRK12838 167 GKHVALIDFG--YKKSILRSLSKR------GCKVTVLPYD-TSLEEIKNLNPDGIVLSNGPGDPKELQPYLPEIKKLISS 237 (354)
T ss_pred CCEEEEECCC--HHHHHHHHHHHC------CCeEEEEECC-CCHHHHhhcCCCEEEEcCCCCChHHhHHHHHHHHHHhcC
Confidence 4789999995 789999999998 9999999986 456777655799999999999987766666777774333
Q ss_pred Ccee--ehhHHHHHHHhCCeeccccccccccceeEEEcccccccccccCCCCceEEeecccceeecCCCCCCCeEEEEEc
Q 037843 92 MPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWT 169 (203)
Q Consensus 92 ~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s 169 (203)
+|+| |+|||+|+.++||++.+++.++..+.+++...... ..+.+.++|+++|..+++++.++.+++.+
T Consensus 238 ~PvlGIClG~QlLa~a~Gg~v~kl~~gh~G~~hpV~~~~~~----------~~~~ts~~H~~aV~~~sl~~~~l~v~a~~ 307 (354)
T PRK12838 238 YPILGICLGHQLIALALGADTEKLPFGHRGANHPVIDLTTG----------RVWMTSQNHGYVVDEDSLDGTPLSVRFFN 307 (354)
T ss_pred CCEEEECHHHHHHHHHhCCEEecCCCCccCCceEEEECCCC----------eEEEeccchheEecccccCCCCcEEEEEE
Confidence 9999 99999999999999999875444444777764321 12456689999998766554568999986
Q ss_pred -CCCcEEEEEeCCCCcEEEEcCCCCCCCCC
Q 037843 170 -EDGLIMAARHKKYKHLHGVQFHPESILTS 198 (203)
Q Consensus 170 -~~~~v~a~~~~~~~~i~gvQfHPE~~~~~ 198 (203)
+++.++|++++++| +||+|||||+...+
T Consensus 308 ~~Dg~Veai~~~~~p-i~gVQfHPE~~~gp 336 (354)
T PRK12838 308 VNDGSIEGLRHKKKP-VLSVQFHPEAHPGP 336 (354)
T ss_pred CCCCeEEEEEECCCC-EEEEEeCCCCCCCC
Confidence 68899999999998 99999999998765
No 38
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=99.97 E-value=1e-30 Score=214.83 Aligned_cols=168 Identities=26% Similarity=0.424 Sum_probs=142.2
Q ss_pred CCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHh-C
Q 037843 11 DKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGISFRTVLEL-G 89 (203)
Q Consensus 11 ~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~~-~ 89 (203)
...+|++||++. ..++.|.|.+. |++++++|++ .+.+++...+||||+||.|||+|......++.|+++ +
T Consensus 178 ~~~~Vv~iD~Gv--K~nIlr~L~~r------g~~vtVVP~~-t~~eeIl~~~pDGiflSNGPGDP~~~~~~i~~ik~l~~ 248 (368)
T COG0505 178 PGKHVVVIDFGV--KRNILRELVKR------GCRVTVVPAD-TSAEEILALNPDGIFLSNGPGDPAPLDYAIETIKELLG 248 (368)
T ss_pred CCcEEEEEEcCc--cHHHHHHHHHC------CCeEEEEcCC-CCHHHHHhhCCCEEEEeCCCCChhHHHHHHHHHHHHhc
Confidence 357899999975 88999999898 9999999986 789999888999999999999998777778888885 5
Q ss_pred CCCcee--ehhHHHHHHHhCCeeccccccccccceeEEEcccccccccccCCCCceEEeecccceeecCCCCCCCeEEEE
Q 037843 90 PTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTA 167 (203)
Q Consensus 90 ~~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a 167 (203)
..+|+| |||||||+.|+|++..++..+++.+++++.-...+ ......++|+|+|+.+++...+ +++-
T Consensus 249 ~~iPifGICLGHQllalA~Ga~T~KmkFGHrG~NhPV~dl~tg----------rv~ITSQNHGyaVd~~s~~~~~-~vth 317 (368)
T COG0505 249 TKIPIFGICLGHQLLALALGAKTYKMKFGHRGANHPVKDLDTG----------RVYITSQNHGYAVDEDSLVETL-KVTH 317 (368)
T ss_pred cCCCeEEEcHHHHHHHHhcCCceeecccCCCCCCcCcccccCC----------eEEEEecCCceecChhhcCCCc-eeEE
Confidence 667999 99999999999999999998877777887654321 2355678999999987665333 7778
Q ss_pred Ec-CCCcEEEEEeCCCCcEEEEcCCCCCCCCCC
Q 037843 168 WT-EDGLIMAARHKKYKHLHGVQFHPESILTSE 199 (203)
Q Consensus 168 ~s-~~~~v~a~~~~~~~~i~gvQfHPE~~~~~~ 199 (203)
.+ .|+.+++++++++| +++||||||.+.-|.
T Consensus 318 ~nlnDgTvEGi~h~~~P-~fSVQ~HPEAsPGPh 349 (368)
T COG0505 318 VNLNDGTVEGIRHKDLP-AFSVQYHPEASPGPH 349 (368)
T ss_pred EeCCCCCccceecCCCc-eEEEccCCCCCCCCc
Confidence 88 68999999999999 999999999987653
No 39
>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade. This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.
Probab=99.97 E-value=6e-30 Score=233.50 Aligned_cols=178 Identities=26% Similarity=0.436 Sum_probs=134.9
Q ss_pred CCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhc-cCCCEEEECCCCCCCCCcch--HHHHHHH
Q 037843 11 DKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKR-KKPRGVVISPGPGAPQESGI--SFRTVLE 87 (203)
Q Consensus 11 ~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~-~~~dgiil~GG~~~~~~~~~--~~~~i~~ 87 (203)
.+++|||||++|||++|++++|++.. ..++.+.+++++....+.+.. ..+|+|||+||||+|.+... +...+.+
T Consensus 4 ~~~~iL~ID~~DSft~nl~~~l~~~~---g~~~~v~vv~~d~~~~~~~~~l~~~D~VVIspGPG~p~~~~~~~i~~~i~~ 80 (742)
T TIGR01823 4 QRLHVLFIDSYDSFTYNVVRLLEQQT---DISVHVTTVHSDTFQDQLLELLPLFDAIVVGPGPGNPNNAQDMGIISELWE 80 (742)
T ss_pred CCceEEEEeCCcchHHHHHHHHHHhc---CCCcEEEEEeCCCCchhhhhhhcCCCEEEECCCCCCccchhhhHHHHHHHH
Confidence 45799999999999999999999872 113667888876433322222 36899999999999975443 2222222
Q ss_pred h--CCCCcee--ehhHHHHHHHhCCeeccccccccccc-eeEEEcccccccccccCCCCceEEeecccceeecCCCCCCC
Q 037843 88 L--GPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGK-ALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDE 162 (203)
Q Consensus 88 ~--~~~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~-~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~~~ 162 (203)
. ..++||| |+|||+|+.++||+|.+.+ ..++|. ..+.+.. ..+|.+++. +.++++|++.+..+ .++.
T Consensus 81 ~~~~~~iPvLGIClG~QlLa~a~GG~v~~~~-~~~hG~~~~v~~~~----~~lf~gl~~-~~v~~~Hs~~v~~~--~~~~ 152 (742)
T TIGR01823 81 LANLDEVPVLGICLGFQSLCLAQGADISRLP-TPKHGQVYEMHTND----AAIFCGLFS-VKSTRYHSLYANPE--GIDT 152 (742)
T ss_pred hcccCCCcEEEEchhhHHHHhhcCCEEEECC-CCCcCeEEEEEECC----ccccCCCCC-CceeEEEEEEccCC--CCCc
Confidence 2 3469999 9999999999999999987 567887 5665543 468999975 88999999998652 2234
Q ss_pred --eEEEEEcCC-CcEEEEEeCCCCcEEEEcCCCCCCCCCCC
Q 037843 163 --LEVTAWTED-GLIMAARHKKYKHLHGVQFHPESILTSEG 200 (203)
Q Consensus 163 --~~~~a~s~~-~~v~a~~~~~~~~i~gvQfHPE~~~~~~g 200 (203)
+.+++.+++ +.++|++++++| +||+|||||+..++.|
T Consensus 153 l~~~~~a~~~~~~~i~ai~h~~~p-i~GVQFHPE~~~s~~g 192 (742)
T TIGR01823 153 LLPLCLTEDEEGIILMSAQTKKKP-WFGVQYHPESCCSELG 192 (742)
T ss_pred ceEEEEEEcCCCCeEEEEEEcCCc-eEEEEeCcccCCCCcc
Confidence 566666654 479999999998 9999999999988876
No 40
>PRK08250 glutamine amidotransferase; Provisional
Probab=99.97 E-value=8.4e-30 Score=204.86 Aligned_cols=169 Identities=19% Similarity=0.201 Sum_probs=134.7
Q ss_pred CcEEEEeCCchH-HHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHh--ccCCCEEEECCCCCCCCCc----ch-----
Q 037843 13 NPIVVIDNYDSF-TYNLCQYMGELELELSQGYHFEVYRNDELTVAELK--RKKPRGVVISPGPGAPQES----GI----- 80 (203)
Q Consensus 13 ~~i~iid~~~~~-~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~--~~~~dgiil~GG~~~~~~~----~~----- 80 (203)
+||+||.+...- ...+..++++. |..+.++...... .+. ..++|+|||+||++++.+. ..
T Consensus 1 m~i~vi~h~~~e~~g~~~~~~~~~------g~~~~~~~~~~g~--~~p~~~~~~d~vii~GGp~~~~~~~~~~p~~~~~~ 72 (235)
T PRK08250 1 MRVHFIIHESFEAPGAYLKWAENR------GYDISYSRVYAGE--ALPENADGFDLLIVMGGPQSPRTTREECPYFDSKA 72 (235)
T ss_pred CeEEEEecCCCCCchHHHHHHHHC------CCeEEEEEccCCC--CCCCCccccCEEEECCCCCChhhccccccccchHH
Confidence 368888765422 45677888887 8888876643211 121 1268999999999886531 11
Q ss_pred HHHHHHH-hCCCCcee--ehhHHHHHHHhCCeeccccccccccceeEEEcccccccccccCCCCceEEeecccceeecCC
Q 037843 81 SFRTVLE-LGPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDS 157 (203)
Q Consensus 81 ~~~~i~~-~~~~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~ 157 (203)
..++|++ +..++|+| |+|+|+|+.++||+|.+.+ ..+.|+.++.++..+..+++|.++++.+.++++|++.+.
T Consensus 73 ~~~~i~~~~~~~~PvlGIC~G~Qlla~alGg~V~~~~-~~e~G~~~v~lt~~g~~d~l~~~~~~~~~v~~~H~d~~~--- 148 (235)
T PRK08250 73 EQRLINQAIKAGKAVIGVCLGAQLIGEALGAKYEHSP-EKEIGYFPITLTEAGLKDPLLSHFGSTLTVGHWHNDMPG--- 148 (235)
T ss_pred HHHHHHHHHHcCCCEEEEChhHHHHHHHhCceeccCC-CCceeEEEEEEccccccCchhhcCCCCcEEEEEecceec---
Confidence 2456666 46789999 9999999999999999987 478999999998887778899999999999999999864
Q ss_pred CCCCCeEEEEEcCCCcEEEEEeCCCCcEEEEcCCCCCCC
Q 037843 158 FRSDELEVTAWTEDGLIMAARHKKYKHLHGVQFHPESIL 196 (203)
Q Consensus 158 l~~~~~~~~a~s~~~~v~a~~~~~~~~i~gvQfHPE~~~ 196 (203)
+|++++++|+|+.|.+|+++..+ ++||+|||||.+.
T Consensus 149 -lP~~a~~LA~s~~~~~qa~~~~~--~~~g~QfHPE~~~ 184 (235)
T PRK08250 149 -LTDQAKVLATSEGCPRQIVQYSN--LVYGFQCHMEFTV 184 (235)
T ss_pred -CCCCCEEEECCCCCCceEEEeCC--CEEEEeecCcCCH
Confidence 67999999999999999999876 4999999999874
No 41
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=99.97 E-value=1.9e-29 Score=196.55 Aligned_cols=167 Identities=23% Similarity=0.271 Sum_probs=134.1
Q ss_pred cEEEEeCCchH-HHHHHHHHHHhhhhhcCC---ceEEEEeCCcccH-HHHhccCCCEEEECCCCCCC-CCcch----HHH
Q 037843 14 PIVVIDNYDSF-TYNLCQYMGELELELSQG---YHFEVYRNDELTV-AELKRKKPRGVVISPGPGAP-QESGI----SFR 83 (203)
Q Consensus 14 ~i~iid~~~~~-~~~l~~~l~~~~~~~~~g---~~~~v~~~~~~~~-~~l~~~~~dgiil~GG~~~~-~~~~~----~~~ 83 (203)
||+||++.... ..++.+++++. | +++++++...... .++ .++|||||+||+.++ .+... ..+
T Consensus 1 ~i~il~~~~~~~~~~~~~~l~~~------g~~~~~~~~~~~~~~~~~~~~--~~~dgvil~Gg~~~~~~~~~~~~~~~~~ 72 (188)
T cd01741 1 RILILQHDTPEGPGLFEDLLREA------GAETIEIDVVDVYAGELLPDL--DDYDGLVILGGPMSVDEDDYPWLKKLKE 72 (188)
T ss_pred CEEEEECCCCCCcchHHHHHHhc------CCCCceEEEEecCCCCCCCCc--ccCCEEEECCCCccCCccCChHHHHHHH
Confidence 57888766533 46788899888 7 6888877653222 222 278999999999887 33322 345
Q ss_pred HHHH-hCCCCcee--ehhHHHHHHHhCCeeccccccccccceeEEEcccccccccccCCCCceEEeecccceeecCCCCC
Q 037843 84 TVLE-LGPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRS 160 (203)
Q Consensus 84 ~i~~-~~~~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~ 160 (203)
+++. ..+++|+| |+|||+|+.++||+|.+...+++.|+.++.++..+..+++|++++..+.++++|++.|.. +|
T Consensus 73 ~i~~~~~~~~pilgiC~G~q~l~~~lGG~v~~~~~~~~~g~~~v~~~~~~~~~~l~~~~~~~~~v~~~H~~~v~~---lp 149 (188)
T cd01741 73 LIRQALAAGKPVLGICLGHQLLARALGGKVGRNPKGWEIGWFPVTLTEAGKADPLFAGLPDEFPVFHWHGDTVVE---LP 149 (188)
T ss_pred HHHHHHHCCCCEEEECccHHHHHHHhCCEEecCCCcceeEEEEEEeccccccCchhhcCCCcceEEEEeccChhh---CC
Confidence 5665 46789999 999999999999999998755577888998887666678899998899999999999987 67
Q ss_pred CCeEEEEEcCCCcEEEEEeCCCCcEEEEcCCCC
Q 037843 161 DELEVTAWTEDGLIMAARHKKYKHLHGVQFHPE 193 (203)
Q Consensus 161 ~~~~~~a~s~~~~v~a~~~~~~~~i~gvQfHPE 193 (203)
++++++|+++++.+++++.++ ++||+|||||
T Consensus 150 ~~~~~la~~~~~~v~~~~~~~--~~~g~QfHPE 180 (188)
T cd01741 150 PGAVLLASSEACPNQAFRYGD--RALGLQFHPE 180 (188)
T ss_pred CCCEEeecCCCCCcceEEecC--CEEEEccCch
Confidence 999999999999999999874 5999999999
No 42
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.96 E-value=3.3e-29 Score=198.19 Aligned_cols=167 Identities=20% Similarity=0.274 Sum_probs=125.8
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCc--eEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCc------chHHH
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGY--HFEVYRNDELTVAELKRKKPRGVVISPGPGAPQES------GISFR 83 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~--~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~------~~~~~ 83 (203)
|+||+|||++.++..++.++|+++ |+ ++.++ .+++++. ++|+|||+|+.....+. +....
T Consensus 1 ~~~~~iid~g~gn~~s~~~al~~~------g~~~~v~~~----~~~~~l~--~~d~lIlpG~~~~~~~~~~l~~~~~~~~ 68 (209)
T PRK13146 1 MMTVAIIDYGSGNLRSAAKALERA------GAGADVVVT----ADPDAVA--AADRVVLPGVGAFADCMRGLRAVGLGEA 68 (209)
T ss_pred CCeEEEEECCCChHHHHHHHHHHc------CCCccEEEE----CCHHHhc--CCCEEEECCCCcHHHHHHHHHHCCcHHH
Confidence 468999999999999999999999 88 44443 3466775 68999998864332211 11223
Q ss_pred HHHHh-CCCCcee--ehhHHHHHHH------------hCCeecccc------ccccccceeEEEcccccccccccCCCCc
Q 037843 84 TVLEL-GPTMPLF--CMGLKCIGEA------------LEGRLYVLL------LVSCMGKALVYYNEKEEADGLLAGLSNP 142 (203)
Q Consensus 84 ~i~~~-~~~~Pil--ClG~Qlla~a------------~gg~v~~~~------~~~~~g~~~i~~~~~~~~~~lf~~~~~~ 142 (203)
+++.. ..++|+| |+|||+|+.+ ++|+|.+.. ..++.||..+.... ++++|+++++.
T Consensus 69 ~~~~~~~~~~PvlGiC~G~q~l~~~~~e~~~~~glg~l~g~v~~~~~~~~~~~~p~~G~~~v~~~~---~~~lf~~~~~~ 145 (209)
T PRK13146 69 VIEAVLAAGRPFLGICVGMQLLFERGLEHGDTPGLGLIPGEVVRFQPDGPALKVPHMGWNTVDQTR---DHPLFAGIPDG 145 (209)
T ss_pred HHHHHHhCCCcEEEECHHHHHHhhcccccCCCCCcceEeEEEEEcCCCCCCCccCccChHHeeeCC---CChhccCCCCC
Confidence 44443 5789999 9999999999 889998861 12467888887654 37899999999
Q ss_pred eEEeecccceeecCCCCCCCeEEEEEcCCC-cEEEEEeCCCCcEEEEcCCCCCCCCCCC
Q 037843 143 FTAGRYHGLVIEKDSFRSDELEVTAWTEDG-LIMAARHKKYKHLHGVQFHPESILTSEG 200 (203)
Q Consensus 143 ~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~-~v~a~~~~~~~~i~gvQfHPE~~~~~~g 200 (203)
+.++++|+|.+.. ++ +..++|+++.+ .++++..+. + +||+|||||++ ++.|
T Consensus 146 ~~v~~~Hs~~v~~---~~-~~~~la~s~~~~~~~a~~~~~-~-i~GvQFHPE~s-~~~G 197 (209)
T PRK13146 146 ARFYFVHSYYAQP---AN-PADVVAWTDYGGPFTAAVARD-N-LFATQFHPEKS-QDAG 197 (209)
T ss_pred CEEEEEeEEEEEc---CC-CCcEEEEEcCCCEEEEEEecC-C-EEEEEcCCccc-HHHH
Confidence 9999999999976 43 56888988765 577877653 4 99999999998 3444
No 43
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.96 E-value=3.4e-28 Score=190.72 Aligned_cols=162 Identities=24% Similarity=0.286 Sum_probs=119.9
Q ss_pred CcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc------hHHHHHH
Q 037843 13 NPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG------ISFRTVL 86 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~------~~~~~i~ 86 (203)
++|+|||+++++..++.++|+++ |+++.+++. .+++. ++|+||| ||+|.+.+.. .+.+.++
T Consensus 1 m~i~iid~g~gn~~s~~~~l~~~------g~~~~~v~~----~~~~~--~~d~iIl-PG~G~~~~~~~~l~~~~l~~~i~ 67 (196)
T PRK13170 1 MNVVIIDTGCANLSSVKFAIERL------GYEPVVSRD----PDVIL--AADKLFL-PGVGTAQAAMDQLRERELIDLIK 67 (196)
T ss_pred CeEEEEeCCCchHHHHHHHHHHC------CCeEEEECC----HHHhC--CCCEEEE-CCCCchHHHHHHHHHcChHHHHH
Confidence 47999999999999999999999 999988753 45565 5799999 6667655432 1234444
Q ss_pred HhCCCCcee--ehhHHHHHHHhC------------Ceecccc----ccccccceeEEEcccccccccccCCCCceEEeec
Q 037843 87 ELGPTMPLF--CMGLKCIGEALE------------GRLYVLL----LVSCMGKALVYYNEKEEADGLLAGLSNPFTAGRY 148 (203)
Q Consensus 87 ~~~~~~Pil--ClG~Qlla~a~g------------g~v~~~~----~~~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~~ 148 (203)
+ .++||| |+|||+|+.+++ +++.+.. ..++.||+.|....+ +++|+++++.+.++++
T Consensus 68 ~--~~~PilGIClG~Qll~~~~~~~~~~~~lg~~~g~v~~~~~~~~~~p~~G~~~v~~~~~---~~l~~~l~~~~~v~~~ 142 (196)
T PRK13170 68 A--CTQPVLGICLGMQLLGERSEESGGVDCLGIIDGPVKKMTDFGLPLPHMGWNQVTPQAG---HPLFQGIEDGSYFYFV 142 (196)
T ss_pred H--cCCCEEEECHHHHHHhhhcccCCCCCCcccccEEEEECCCCCCCCCccccceeEeCCC---ChhhhCCCcCCEEEEE
Confidence 4 369999 999999999973 3454432 135688888877543 6799999999999999
Q ss_pred ccceeecCCCCCCCeEEEEEcCCC-cEEEEEeCCCCcEEEEcCCCCCCCCCCCC
Q 037843 149 HGLVIEKDSFRSDELEVTAWTEDG-LIMAARHKKYKHLHGVQFHPESILTSEGK 201 (203)
Q Consensus 149 H~~~v~~~~l~~~~~~~~a~s~~~-~v~a~~~~~~~~i~gvQfHPE~~~~~~g~ 201 (203)
|+|.+. ++..++|+++.+ .++++.. ..+ +||+|||||++. +.|.
T Consensus 143 Hs~~lp------~~~~~la~s~~~~~~~~~~~-~~~-i~G~QFHPE~~~-~~G~ 187 (196)
T PRK13170 143 HSYAMP------VNEYTIAQCNYGEPFSAAIQ-KDN-FFGVQFHPERSG-AAGA 187 (196)
T ss_pred CeeecC------CCCcEEEEecCCCeEEEEEE-cCC-EEEEECCCCCcc-cccH
Confidence 998762 456788888754 4444443 334 999999999995 5553
No 44
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=99.96 E-value=2.9e-28 Score=186.96 Aligned_cols=164 Identities=22% Similarity=0.278 Sum_probs=123.2
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcch------HHHHH
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGI------SFRTV 85 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~------~~~~i 85 (203)
|++|+|||++.++.+++.++++.+ |+++.+. .+++++. +.|+||| ||.|...+... +.+.|
T Consensus 1 m~~i~IIDyg~GNL~Sv~~Aler~------G~~~~vs----~d~~~i~--~AD~liL-PGVGaf~~am~~L~~~gl~~~i 67 (204)
T COG0118 1 MMMVAIIDYGSGNLRSVKKALERL------GAEVVVS----RDPEEIL--KADKLIL-PGVGAFGAAMANLRERGLIEAI 67 (204)
T ss_pred CCEEEEEEcCcchHHHHHHHHHHc------CCeeEEe----cCHHHHh--hCCEEEe-cCCCCHHHHHHHHHhcchHHHH
Confidence 578999999999999999999999 9888774 3567777 4699999 77887655432 35556
Q ss_pred HH-hCCCCcee--ehhHHHHHHH------------hCCeecccccc----ccccceeEEEcccccccccccCCCCceEEe
Q 037843 86 LE-LGPTMPLF--CMGLKCIGEA------------LEGRLYVLLLV----SCMGKALVYYNEKEEADGLLAGLSNPFTAG 146 (203)
Q Consensus 86 ~~-~~~~~Pil--ClG~Qlla~a------------~gg~v~~~~~~----~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~ 146 (203)
++ ...++|+| |+|||+|.+. +.|+|.++... +..||..+.... .++||+++++.-.+|
T Consensus 68 ~~~~~~~kP~LGIClGMQlLfe~SeE~~~~~GLg~i~G~V~r~~~~~~kvPHMGWN~l~~~~---~~~l~~gi~~~~~~Y 144 (204)
T COG0118 68 KEAVESGKPFLGICLGMQLLFERSEEGGGVKGLGLIPGKVVRFPAEDLKVPHMGWNQVEFVR---GHPLFKGIPDGAYFY 144 (204)
T ss_pred HHHHhcCCCEEEEeHhHHhhhhcccccCCCCCcceecceEEEcCCCCCCCCccccceeeccC---CChhhcCCCCCCEEE
Confidence 65 45669999 9999999874 23677776532 457898887762 389999998878899
Q ss_pred ecccceeecCCCCCCCeEEEEEcCCC-cEEEEEeCCCCcEEEEcCCCCCCCC
Q 037843 147 RYHGLVIEKDSFRSDELEVTAWTEDG-LIMAARHKKYKHLHGVQFHPESILT 197 (203)
Q Consensus 147 ~~H~~~v~~~~l~~~~~~~~a~s~~~-~v~a~~~~~~~~i~gvQfHPE~~~~ 197 (203)
+.|||.+.+ . +.-.++++++.+ .+-|...++ +++|+|||||++.+
T Consensus 145 FVHSY~~~~---~-~~~~v~~~~~YG~~f~AaV~k~--N~~g~QFHPEKSg~ 190 (204)
T COG0118 145 FVHSYYVPP---G-NPETVVATTDYGEPFPAAVAKD--NVFGTQFHPEKSGK 190 (204)
T ss_pred EEEEEeecC---C-CCceEEEeccCCCeeEEEEEeC--CEEEEecCcccchH
Confidence 999999974 2 334456666544 444444455 59999999999864
No 45
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.96 E-value=1.9e-28 Score=192.51 Aligned_cols=163 Identities=21% Similarity=0.268 Sum_probs=124.3
Q ss_pred EEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCc------chHHHHHHH-
Q 037843 15 IVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQES------GISFRTVLE- 87 (203)
Q Consensus 15 i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~------~~~~~~i~~- 87 (203)
|+|||+++++...+.++|+++ |+++++++. .+++. ++|+|||+|| +.+.+. ....+.+++
T Consensus 1 i~i~d~g~~~~~~~~~~l~~~------g~~v~v~~~----~~~l~--~~d~iiipG~-~~~~~~~~~~~~~~~~~~i~~~ 67 (198)
T cd01748 1 IAIIDYGMGNLRSVANALERL------GAEVIITSD----PEEIL--SADKLILPGV-GAFGDAMANLRERGLIEALKEA 67 (198)
T ss_pred CEEEeCCCChHHHHHHHHHHC------CCeEEEEcC----hHHhc--cCCEEEECCC-CcHHHHHHHHHHcChHHHHHHH
Confidence 689999999999999999999 999998764 23454 5899999554 443321 123556666
Q ss_pred hCCCCcee--ehhHHHHHHH------------hCCeeccccc-----cccccceeEEEcccccccccccCCCCceEEeec
Q 037843 88 LGPTMPLF--CMGLKCIGEA------------LEGRLYVLLL-----VSCMGKALVYYNEKEEADGLLAGLSNPFTAGRY 148 (203)
Q Consensus 88 ~~~~~Pil--ClG~Qlla~a------------~gg~v~~~~~-----~~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~~ 148 (203)
.++++||| |+|||+|+.+ +++++.+.+. .+++|+..+..... +++|+++++.+.++++
T Consensus 68 ~~~~~pilGiC~G~q~l~~~~~~g~~~~~lg~~~g~v~~~~~~~~~~~~~~G~~~v~~~~~---~~lf~~l~~~~~v~~~ 144 (198)
T cd01748 68 IASGKPFLGICLGMQLLFESSEEGGGTKGLGLIPGKVVRFPASEGLKVPHMGWNQLEITKE---SPLFKGIPDGSYFYFV 144 (198)
T ss_pred HHCCCcEEEECHHHHHhccccccCCCCCCCCCcceEEEECCCCCCceEEEeccceEEECCC---ChhhhCCCCCCeEEEE
Confidence 46789999 9999999998 7888888652 14778877776543 6799999999999999
Q ss_pred ccceeecCCCCCCCeEEEEEcCCC-cEEEEEeCCCCcEEEEcCCCCCCCCCCC
Q 037843 149 HGLVIEKDSFRSDELEVTAWTEDG-LIMAARHKKYKHLHGVQFHPESILTSEG 200 (203)
Q Consensus 149 H~~~v~~~~l~~~~~~~~a~s~~~-~v~a~~~~~~~~i~gvQfHPE~~~~~~g 200 (203)
|++.+.. + +.+.++|+++++ .++++.. +.+ +||+|||||++. +.|
T Consensus 145 Hs~~v~~---~-~~~~~la~s~~~~~~~~~~~-~~~-i~GvQFHPE~~~-~~g 190 (198)
T cd01748 145 HSYYAPP---D-DPDYILATTDYGGKFPAAVE-KDN-IFGTQFHPEKSG-KAG 190 (198)
T ss_pred eEEEEec---C-CcceEEEEecCCCeEEEEEE-cCC-EEEEECCCcccc-HhH
Confidence 9999975 4 567888988664 4555544 445 999999999984 444
No 46
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=99.96 E-value=5.6e-28 Score=190.95 Aligned_cols=168 Identities=18% Similarity=0.183 Sum_probs=121.7
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc------hHHHHH
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG------ISFRTV 85 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~------~~~~~i 85 (203)
|++|.|||++.++..++.++++.+ |+++.+++. .+++. ++|+||+ ||+|++.... .+.+.+
T Consensus 1 ~~~v~iid~~~GN~~sl~~al~~~------g~~v~vv~~----~~~l~--~~d~iIl-PG~g~~~~~~~~l~~~gl~~~i 67 (210)
T CHL00188 1 MMKIGIIDYSMGNLHSVSRAIQQA------GQQPCIINS----ESELA--QVHALVL-PGVGSFDLAMKKLEKKGLITPI 67 (210)
T ss_pred CcEEEEEEcCCccHHHHHHHHHHc------CCcEEEEcC----HHHhh--hCCEEEE-CCCCchHHHHHHHHHCCHHHHH
Confidence 457999999999999999999999 999988753 34554 5799887 6667754221 122344
Q ss_pred HH-hCCCCcee--ehhHHHHHHH-----------hCCeecccc-----ccccccceeEEEcccccc---cccccCCCCce
Q 037843 86 LE-LGPTMPLF--CMGLKCIGEA-----------LEGRLYVLL-----LVSCMGKALVYYNEKEEA---DGLLAGLSNPF 143 (203)
Q Consensus 86 ~~-~~~~~Pil--ClG~Qlla~a-----------~gg~v~~~~-----~~~~~g~~~i~~~~~~~~---~~lf~~~~~~~ 143 (203)
++ +.+++|+| |+|||+|++. +.|+|.+.. .-++.||..+..+.+... ++||+++++.+
T Consensus 68 ~~~~~~~~pvlGIClG~Qll~~~~~~~~~~glg~~~G~v~~~~~~~~~~~p~~Gw~~v~~~~~~~~~~~~~lf~~l~~~~ 147 (210)
T CHL00188 68 KKWIAEGNPFIGICLGLHLLFETSEEGKEEGLGIYKGQVKRLKHSPVKVIPHMGWNRLECQNSECQNSEWVNWKAWPLNP 147 (210)
T ss_pred HHHHHcCCCEEEECHHHHHHhhccccCCcCCccceeEEEEECCCCCCCccCccCCccceecCCcccccCChhhcCCCCCC
Confidence 44 56789999 9999999986 456666652 124568888877654221 46999999999
Q ss_pred EEeecccceeecCCCCCCCeEEEEEc----CCCcEEEEEeCCCCcEEEEcCCCCCCCCCCCC
Q 037843 144 TAGRYHGLVIEKDSFRSDELEVTAWT----EDGLIMAARHKKYKHLHGVQFHPESILTSEGK 201 (203)
Q Consensus 144 ~~~~~H~~~v~~~~l~~~~~~~~a~s----~~~~v~a~~~~~~~~i~gvQfHPE~~~~~~g~ 201 (203)
.++++|+|.+.+ ++...++.+ .++.+++++.. + +||+|||||++ ++.|.
T Consensus 148 ~v~~~HS~~v~p-----~~~~~l~~t~~~~~~~~v~a~~~~--~-i~GvQFHPE~s-~~~G~ 200 (210)
T CHL00188 148 WAYFVHSYGVMP-----KSQACATTTTFYGKQQMVAAIEYD--N-IFAMQFHPEKS-GEFGL 200 (210)
T ss_pred EEEEeCccEecC-----CCCceEEEEEecCCcceEEEEecC--C-EEEEecCCccc-cHhHH
Confidence 999999999853 233334433 24569999863 4 99999999998 66653
No 47
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=99.95 E-value=3.6e-27 Score=191.61 Aligned_cols=132 Identities=29% Similarity=0.333 Sum_probs=99.7
Q ss_pred CCCEEEECCCCCCCC--------Ccch--------HHHHHHH-hCCCCcee--ehhHHHHHHHhCCeecccc----cccc
Q 037843 62 KPRGVVISPGPGAPQ--------ESGI--------SFRTVLE-LGPTMPLF--CMGLKCIGEALEGRLYVLL----LVSC 118 (203)
Q Consensus 62 ~~dgiil~GG~~~~~--------~~~~--------~~~~i~~-~~~~~Pil--ClG~Qlla~a~gg~v~~~~----~~~~ 118 (203)
.+|||||+||+.+.. .... ..++++. +++++||| |+|||+|+.++||++.+.. ....
T Consensus 61 ~~DGlil~GG~~dv~P~~yg~~~~~~~~~~~rD~~e~~li~~a~~~~~PILGICrG~Qllnva~GGtl~~~~~~~~~~~~ 140 (254)
T PRK11366 61 KLDGIYLPGSPSNVQPHLYGENGDEPDADPGRDLLSMALINAALERRIPIFAICRGLQELVVATGGSLHRKLCEQPELLE 140 (254)
T ss_pred hCCEEEeCCCCCCcCHhhcCCCCCCCCCChhHHHHHHHHHHHHHHCCCCEEEECHhHHHHHHHhCCeEeecccccccccc
Confidence 589999999986542 1111 1455665 57889999 9999999999999999752 0001
Q ss_pred cc-------------ceeEEEcccccccccccCCC---CceEEeecccceeecCCCCCCCeEEEEEcCCCcEEEEEeCCC
Q 037843 119 MG-------------KALVYYNEKEEADGLLAGLS---NPFTAGRYHGLVIEKDSFRSDELEVTAWTEDGLIMAARHKKY 182 (203)
Q Consensus 119 ~g-------------~~~i~~~~~~~~~~lf~~~~---~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~v~a~~~~~~ 182 (203)
|+ .+.|.++. ++++..+. ..+.++++|+++|.. ++++++++|+++++.+||+++.++
T Consensus 141 h~~~~~~~~~~~~~~~h~v~~~~----~s~l~~i~~~~~~~~Vns~H~q~V~~---l~~gl~v~A~s~dg~ieAie~~~~ 213 (254)
T PRK11366 141 HREDPELPVEQQYAPSHEVQVEE----GGLLSALLPECSNFWVNSLHGQGAKV---VSPRLRVEARSPDGLVEAVSVINH 213 (254)
T ss_pred cccCCccccccccCCceEEEECC----CCcHHHhcCCCceEEeehHHHHHHhh---cccceEEEEEcCCCcEEEEEeCCC
Confidence 11 24455543 33444432 467899999999987 789999999999999999999998
Q ss_pred CcEEEEcCCCCCCCCCCC
Q 037843 183 KHLHGVQFHPESILTSEG 200 (203)
Q Consensus 183 ~~i~gvQfHPE~~~~~~g 200 (203)
++++|||||||+..++++
T Consensus 214 ~~~~GVQwHPE~~~~~~~ 231 (254)
T PRK11366 214 PFALGVQWHPEWNSSEYA 231 (254)
T ss_pred CCEEEEEeCCCcCCCCCc
Confidence 867999999999988776
No 48
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.95 E-value=1.4e-27 Score=187.78 Aligned_cols=160 Identities=23% Similarity=0.227 Sum_probs=119.4
Q ss_pred cEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCc------chHHHHHHH
Q 037843 14 PIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQES------GISFRTVLE 87 (203)
Q Consensus 14 ~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~------~~~~~~i~~ 87 (203)
||+|||+++++..++.++++.+ |++++++. +.+++. ++|+||++|| +++... ..+.+.+++
T Consensus 1 ~i~vid~g~gn~~~~~~~l~~~------g~~v~~~~----~~~~l~--~~d~lilpG~-g~~~~~~~~l~~~~~~~~i~~ 67 (199)
T PRK13181 1 MIAIIDYGAGNLRSVANALKRL------GVEAVVSS----DPEEIA--GADKVILPGV-GAFGQAMRSLRESGLDEALKE 67 (199)
T ss_pred CEEEEeCCCChHHHHHHHHHHC------CCcEEEEc----ChHHhc--cCCEEEECCC-CCHHHHHHHHHHCChHHHHHH
Confidence 4999999999999999999999 99988773 345665 5899999554 443211 112344555
Q ss_pred -hCCCCcee--ehhHHHHHHH-----------hCCeeccccc----cccccceeEEEcccccccccccCCCCceEEeecc
Q 037843 88 -LGPTMPLF--CMGLKCIGEA-----------LEGRLYVLLL----VSCMGKALVYYNEKEEADGLLAGLSNPFTAGRYH 149 (203)
Q Consensus 88 -~~~~~Pil--ClG~Qlla~a-----------~gg~v~~~~~----~~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~~H 149 (203)
...++|+| |+|||+|+.+ +++++.+.+. .++.|+..+.... .++||+++++.+.++++|
T Consensus 68 ~~~~~~PvlGiC~G~Qll~~~~~~~~~~glg~l~~~v~~~~~~~~~~~~~G~~~v~~~~---~~~lf~~l~~~~~~~~~H 144 (199)
T PRK13181 68 HVEKKQPVLGICLGMQLLFESSEEGNVKGLGLIPGDVKRFRSEPLKVPQMGWNSVKPLK---ESPLFKGIEEGSYFYFVH 144 (199)
T ss_pred HHHCCCCEEEECHhHHHhhhhcccCCcCCcceEEEEEEEcCCCCCCCCccCccccccCC---CChhHcCCCCCCEEEEeC
Confidence 46789999 9999999999 7788887642 2467887776543 378999999889999999
Q ss_pred cceeecCCCCCCCeEEEEEcCCC-cE-EEEEeCCCCcEEEEcCCCCCCC
Q 037843 150 GLVIEKDSFRSDELEVTAWTEDG-LI-MAARHKKYKHLHGVQFHPESIL 196 (203)
Q Consensus 150 ~~~v~~~~l~~~~~~~~a~s~~~-~v-~a~~~~~~~~i~gvQfHPE~~~ 196 (203)
++.+.. + +.+.++|+++.+ .+ ++++ . .+ +||+|||||++.
T Consensus 145 s~~v~~---~-~~~~~lA~s~~~~~~~~~~~-~-~~-i~GvQFHPE~~~ 186 (199)
T PRK13181 145 SYYVPC---E-DPEDVLATTEYGVPFCSAVA-K-DN-IYAVQFHPEKSG 186 (199)
T ss_pred eeEecc---C-CcccEEEEEcCCCEEEEEEE-C-CC-EEEEECCCccCC
Confidence 999865 4 345688988754 33 3443 3 34 999999999873
No 49
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.94 E-value=1.5e-26 Score=182.62 Aligned_cols=161 Identities=25% Similarity=0.291 Sum_probs=124.1
Q ss_pred cEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCc------chHHHHHHH
Q 037843 14 PIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQES------GISFRTVLE 87 (203)
Q Consensus 14 ~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~------~~~~~~i~~ 87 (203)
+|+|||++.++..++.++|++. |+.+.+++. .+++. ++|+|||+|| +.+.+. ..+.++|++
T Consensus 1 ~i~~~d~~~~~~~~i~~~l~~~------G~~v~~~~~----~~~l~--~~d~iiipG~-~~~~~~~~~~~~~~~~~~i~~ 67 (205)
T PRK13141 1 MIAIIDYGMGNLRSVEKALERL------GAEAVITSD----PEEIL--AADGVILPGV-GAFPDAMANLRERGLDEVIKE 67 (205)
T ss_pred CEEEEEcCCchHHHHHHHHHHC------CCeEEEECC----HHHhc--cCCEEEECCC-CchHHHHHHHHHcChHHHHHH
Confidence 5899999999999999999999 999988753 35555 6899999775 332221 123455666
Q ss_pred -hCCCCcee--ehhHHHHHHH------------hCCeeccccc-----cccccceeEEEcccccccccccCCCCceEEee
Q 037843 88 -LGPTMPLF--CMGLKCIGEA------------LEGRLYVLLL-----VSCMGKALVYYNEKEEADGLLAGLSNPFTAGR 147 (203)
Q Consensus 88 -~~~~~Pil--ClG~Qlla~a------------~gg~v~~~~~-----~~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~ 147 (203)
..+++|+| |+|+|+|+.+ +++++.+.+. .++.|++.+..+. .+++|++++..+.++.
T Consensus 68 ~~~~~~pvlGIC~G~Qll~~~~~~~~~~~~lg~l~g~v~~~~~~~~~~~~~~g~~~i~~~~---~~~l~~~l~~~~~v~~ 144 (205)
T PRK13141 68 AVASGKPLLGICLGMQLLFESSEEFGETEGLGLLPGRVRRFPPEEGLKVPHMGWNQLELKK---ESPLLKGIPDGAYVYF 144 (205)
T ss_pred HHHCCCcEEEECHHHHHhhhccccCCCCCccceEEEEEEEcCCCCCCcccEecCccceeCC---CChhhhCCCCCCEEEE
Confidence 46789999 9999999997 6788877641 1345777776654 3789999998889999
Q ss_pred cccceeecCCCCCCCeEEEEEcCCC-cEEEEEeCCCCcEEEEcCCCCCCC
Q 037843 148 YHGLVIEKDSFRSDELEVTAWTEDG-LIMAARHKKYKHLHGVQFHPESIL 196 (203)
Q Consensus 148 ~H~~~v~~~~l~~~~~~~~a~s~~~-~v~a~~~~~~~~i~gvQfHPE~~~ 196 (203)
+|++.+.. ++++.++|+++++ .++++.... ++||+|||||++.
T Consensus 145 ~Hs~~v~~----~~~~~v~a~~~~~~~~~a~~~~~--~i~GvQfHPE~~~ 188 (205)
T PRK13141 145 VHSYYADP----CDEEYVAATTDYGVEFPAAVGKD--NVFGAQFHPEKSG 188 (205)
T ss_pred ECeeEecc----CCcCeEEEEEeCCcEEEEEEecC--CEEEEeCCCccch
Confidence 99999964 5778999988765 788887654 4999999999875
No 50
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.94 E-value=3.1e-26 Score=180.32 Aligned_cols=159 Identities=20% Similarity=0.292 Sum_probs=116.2
Q ss_pred cEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcch------HHHHHHH
Q 037843 14 PIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGI------SFRTVLE 87 (203)
Q Consensus 14 ~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~------~~~~i~~ 87 (203)
||+|||++.++..++.++|+.+ |+++.+++. .+++. ++|+||| ||++++.+... +...+++
T Consensus 1 ~i~iid~g~~n~~~v~~~l~~~------g~~~~~~~~----~~~l~--~~d~lil-PG~g~~~~~~~~l~~~~~~~~l~~ 67 (201)
T PRK13152 1 MIALIDYKAGNLNSVAKAFEKI------GAINFIAKN----PKDLQ--KADKLLL-PGVGSFKEAMKNLKELGFIEALKE 67 (201)
T ss_pred CEEEEECCCCcHHHHHHHHHHC------CCeEEEECC----HHHHc--CCCEEEE-CCCCchHHHHHHHHHcCcHHHHHH
Confidence 4899999999999999999999 998877653 34565 5799999 66677654321 1333444
Q ss_pred --hCCCCcee--ehhHHHHHHH-h-----------CCeeccccc-----cccccceeEEEcccccccccccCCCCceEEe
Q 037843 88 --LGPTMPLF--CMGLKCIGEA-L-----------EGRLYVLLL-----VSCMGKALVYYNEKEEADGLLAGLSNPFTAG 146 (203)
Q Consensus 88 --~~~~~Pil--ClG~Qlla~a-~-----------gg~v~~~~~-----~~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~ 146 (203)
++.++|+| |+|||+|+.+ . +++|.+... .+..|++.+..... +++|+++++++.++
T Consensus 68 ~~~~~~~pvlGiC~G~Q~l~~~~~~~~~~~~lg~~~g~v~~~~~~~~~~~~~~g~~~v~~~~~---~~l~~~l~~~~~~~ 144 (201)
T PRK13152 68 QVLVQKKPILGICLGMQLFLERGYEGGVCEGLGFIEGEVVKFEEDLNLKIPHMGWNELEILKQ---SPLYQGIPEKSDFY 144 (201)
T ss_pred HHHhCCCcEEEECHhHHHHhhcccccCCcCCcccccEEEEECCCCCCCcCCccCeEEEEECCC---ChhhhCCCCCCeEE
Confidence 36789999 9999999997 1 256655321 13457778876543 67999998889999
Q ss_pred ecccceeecCCCCCCCeEEEEEcCCC--cEEEEEeCCCCcEEEEcCCCCCCC
Q 037843 147 RYHGLVIEKDSFRSDELEVTAWTEDG--LIMAARHKKYKHLHGVQFHPESIL 196 (203)
Q Consensus 147 ~~H~~~v~~~~l~~~~~~~~a~s~~~--~v~a~~~~~~~~i~gvQfHPE~~~ 196 (203)
++|++.+.. ++ ..+++.++++ .+++++. . ++||+|||||++.
T Consensus 145 ~vHS~~v~~---~~--~~v~a~~~~g~~~~~a~~~--~-~i~GvQFHPE~~~ 188 (201)
T PRK13152 145 FVHSFYVKC---KD--EFVSAKAQYGHKFVASLQK--D-NIFATQFHPEKSQ 188 (201)
T ss_pred EEcccEeec---CC--CcEEEEECCCCEEEEEEec--C-CEEEEeCCCeecC
Confidence 999999975 32 4566766554 5567663 2 4999999999984
No 51
>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism]
Probab=99.94 E-value=2.6e-27 Score=198.59 Aligned_cols=174 Identities=24% Similarity=0.377 Sum_probs=149.3
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc--hHHHHHHHhC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG--ISFRTVLELG 89 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~--~~~~~i~~~~ 89 (203)
..+|+|+|++++|...+.|.+|++ .+..+++|.. .+...+....|-||||||||.++++.+ .+...+.+++
T Consensus 16 ~d~i~iLD~GaQY~~~I~RrvRel------~v~se~~p~~-t~~~~i~~~~~rgiIiSGGP~SVya~dAP~~dp~if~~~ 88 (552)
T KOG1622|consen 16 FDTILILDFGAQYGKVIDRRVREL------NVQSEILPLT-TPAKTITEYGPRGIIISGGPNSVYAEDAPSFDPAIFELG 88 (552)
T ss_pred CceEEEEeccchhhHHHHHHHHHH------hhhhhhccCC-ChhhhhhcCCceEEEEeCCCCccccCcCCCCChhHhccC
Confidence 467999999999999999999999 8888888864 556677767899999999999988654 3556677766
Q ss_pred CCCcee--ehhHHHHHHHhCCeeccccccccccceeEEEcccccccccccCCCCce--EEeecccceeecCCCCCCCeEE
Q 037843 90 PTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEADGLLAGLSNPF--TAGRYHGLVIEKDSFRSDELEV 165 (203)
Q Consensus 90 ~~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~~~~~--~~~~~H~~~v~~~~l~~~~~~~ 165 (203)
+|+| |+|||+|+..+||.|.+-. ..+.|...|..... ..||+++.... .++..|++.+.. ++.++++
T Consensus 89 --vpvLGICYGmQ~i~~~~Gg~V~~~~-~RE~G~~eI~v~~~---~~lF~~~~~~~~~~VlltHgdsl~~---v~~g~kv 159 (552)
T KOG1622|consen 89 --VPVLGICYGMQLINKLNGGTVVKGM-VREDGEDEIEVDDS---VDLFSGLHKTEFMTVLLTHGDSLSK---VPEGFKV 159 (552)
T ss_pred --CcceeehhHHHHHHHHhCCcccccc-ccCCCCceEEcCch---hhhhhhhcccceeeeeeccccchhh---cccccee
Confidence 9999 9999999999999999876 67888888877654 55899887544 488999999998 7899999
Q ss_pred EEEcCCCcEEEEEeCCCCcEEEEcCCCCCCCCCCCCC
Q 037843 166 TAWTEDGLIMAARHKKYKHLHGVQFHPESILTSEGKT 202 (203)
Q Consensus 166 ~a~s~~~~v~a~~~~~~~~i~gvQfHPE~~~~~~g~~ 202 (203)
.|+|.+.++.++.+..++ +||+|||||.++++.|.+
T Consensus 160 ~a~s~n~~va~i~~e~kk-iyglqfhpEV~~t~~g~~ 195 (552)
T KOG1622|consen 160 VAFSGNKPVAGILNELKK-IYGLQFHPEVTLTPNGKE 195 (552)
T ss_pred EEeecCcceeeehhhhhh-hhcCCCCCcccccCchhH
Confidence 999988889999988887 999999999999998864
No 52
>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit. This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.
Probab=99.94 E-value=4.1e-26 Score=178.95 Aligned_cols=159 Identities=23% Similarity=0.193 Sum_probs=116.4
Q ss_pred EEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-h-----HHHHHHH-
Q 037843 15 IVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-I-----SFRTVLE- 87 (203)
Q Consensus 15 i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~-----~~~~i~~- 87 (203)
|+|||++.++...+.++++.+ |+++++++.+ +++. ++|+||++| ++++.+.. . ...++++
T Consensus 1 ~~~~~~~~gn~~~l~~~l~~~------g~~v~v~~~~----~~l~--~~d~lii~G-~~~~~~~~~~l~~~~~~~l~~~~ 67 (196)
T TIGR01855 1 IVIIDYGVGNLGSVKRALKRV------GAEPVVVKDS----KEAE--LADKLILPG-VGAFGAAMARLRENGLDLFVELV 67 (196)
T ss_pred CEEEecCCcHHHHHHHHHHHC------CCcEEEEcCH----HHhc--cCCEEEECC-CCCHHHHHHHHHHcCcHHHHHHH
Confidence 689999999999999999999 9999988742 3444 589999955 44433211 0 2233354
Q ss_pred hCCCCcee--ehhHHHHHHH------------hCCeecccc--ccccccceeEEEcccccccccccCCCCceEEeecccc
Q 037843 88 LGPTMPLF--CMGLKCIGEA------------LEGRLYVLL--LVSCMGKALVYYNEKEEADGLLAGLSNPFTAGRYHGL 151 (203)
Q Consensus 88 ~~~~~Pil--ClG~Qlla~a------------~gg~v~~~~--~~~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~ 151 (203)
++.++|+| |+|||+|+.+ +|++|.+.+ ...+.|+..+.... .++||+++++.+.++++|++
T Consensus 68 ~~~~~pvlGiC~G~Qll~~~~~~~~~~~glg~~~~~v~~~~~~~~~~~g~~~~~~~~---~~~l~~~l~~~~~v~~~Hs~ 144 (196)
T TIGR01855 68 VRLGKPVLGICLGMQLLFERSEEGGGVPGLGLIKGNVVKLEARKVPHMGWNEVHPVK---ESPLLNGIDEGAYFYFVHSY 144 (196)
T ss_pred HhCCCCEEEECHHHHHhhhccccCCCCCCcceeeEEEEECCCCCCCcccCeeeeeCC---CChHHhCCCCCCEEEEECee
Confidence 46789999 9999999998 688888764 13467776665543 37899999999999999999
Q ss_pred eeecCCCCCCCeEEEEEcCC-CcEEEEEeCCCCcEEEEcCCCCCCC
Q 037843 152 VIEKDSFRSDELEVTAWTED-GLIMAARHKKYKHLHGVQFHPESIL 196 (203)
Q Consensus 152 ~v~~~~l~~~~~~~~a~s~~-~~v~a~~~~~~~~i~gvQfHPE~~~ 196 (203)
.+.. ++ +. +++.+++ +..+++.. ..+ +||+|||||++.
T Consensus 145 ~v~~---~~-~~-~~a~~~~g~~~~~~~~-~~~-i~GvQFHPE~~~ 183 (196)
T TIGR01855 145 YAVC---EE-EA-VLAYADYGEKFPAAVQ-KGN-IFGTQFHPEKSG 183 (196)
T ss_pred EecC---CC-Cc-EEEEEcCCcEEEEEEe-cCC-EEEEECCCccCc
Confidence 9975 43 54 5565554 45555544 334 999999999874
No 53
>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.94 E-value=7.5e-26 Score=185.41 Aligned_cols=168 Identities=19% Similarity=0.254 Sum_probs=119.6
Q ss_pred HHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhc--cCCCEEEECCCCCCCCCcc--h-HHHHHHH----h--CCCCce
Q 037843 26 YNLCQYMGELELELSQGYHFEVYRNDELTVAELKR--KKPRGVVISPGPGAPQESG--I-SFRTVLE----L--GPTMPL 94 (203)
Q Consensus 26 ~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~--~~~dgiil~GG~~~~~~~~--~-~~~~i~~----~--~~~~Pi 94 (203)
.+.++++++. |+.+.+++.+ .+.+++.. ..+||||++||+.+....+ . ...+++. . +..+||
T Consensus 23 ~~Yv~~l~~a------G~~vvpi~~~-~~~~~l~~~l~~~dG~l~~Gg~~~~~~~~~~~~~~~l~~~a~~~~~~g~~~Pv 95 (273)
T cd01747 23 ASYVKFLESA------GARVVPIWIN-ESEEYYDKLFKSINGILFPGGAVDIDTSGYARTAKIIYNLALERNDAGDYFPV 95 (273)
T ss_pred HHHHHHHHHC------CCeEEEEEeC-CcHHHHHHHHhhCCEEEECCCCCcCCccccchHHHHHHHHHHHhhhcCCCCcE
Confidence 3466677776 9998877765 23344332 2689999999987664222 1 1222222 1 234999
Q ss_pred e--ehhHHHHHHHhCCeeccccccccccc-eeEEEcccccccccccCCCC--------ceEEeecccceeecCCCC----
Q 037843 95 F--CMGLKCIGEALEGRLYVLLLVSCMGK-ALVYYNEKEEADGLLAGLSN--------PFTAGRYHGLVIEKDSFR---- 159 (203)
Q Consensus 95 l--ClG~Qlla~a~gg~v~~~~~~~~~g~-~~i~~~~~~~~~~lf~~~~~--------~~~~~~~H~~~v~~~~l~---- 159 (203)
| |+|||+|+.++||++........++. .++.++....+++||++++. ...++++|+|++.+++++
T Consensus 96 ~GiClG~QlL~~~~gg~~~~~~~~~~~~~~~~l~~t~~~~~s~lF~~~p~~l~~~l~~~~~~~~~Hs~~v~~~~~~~~~~ 175 (273)
T cd01747 96 WGTCLGFELLTYLTSGETLLLEATEATNSALPLNFTEDALQSRLFKRFPPDLLKSLATEPLTMNNHRYGISPENFTENGL 175 (273)
T ss_pred EEEcHHHHHHHHHhCCCccccCCCccccceEEEEEccccccChhhhcCCHHHHHHHhcccHHHhhcccccCHhhcccccc
Confidence 9 99999999999997554222334555 88888877677889999864 346789999999765443
Q ss_pred -CCCeEEEEEcCC--C--cEEEEEeCCCCcEEEEcCCCCCCCCCCCC
Q 037843 160 -SDELEVTAWTED--G--LIMAARHKKYKHLHGVQFHPESILTSEGK 201 (203)
Q Consensus 160 -~~~~~~~a~s~~--~--~v~a~~~~~~~~i~gvQfHPE~~~~~~g~ 201 (203)
...+.+++++.+ + .+++++++++| +||+|||||++.+||+.
T Consensus 176 l~~~~~vla~~~d~~g~~fis~ie~~~~p-i~gvQFHPEks~few~~ 221 (273)
T cd01747 176 LSDFFNVLTTNDDWNGVEFISTVEAYKYP-IYGVQWHPEKNAFEWKK 221 (273)
T ss_pred cccceEEEEEEecCCCceEEEEEEecCCc-eEEEecCCCcccccccc
Confidence 245788898744 3 47999999998 99999999999999986
No 54
>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.94 E-value=1.1e-25 Score=177.80 Aligned_cols=167 Identities=17% Similarity=0.220 Sum_probs=117.8
Q ss_pred cEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc------hHHHHHHH
Q 037843 14 PIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG------ISFRTVLE 87 (203)
Q Consensus 14 ~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~------~~~~~i~~ 87 (203)
||+|||++.++..++.++++.. +.++..+ .+++++. ++|+||++|+ +++.+.. .+...+++
T Consensus 1 ~i~iidyg~gNl~s~~~al~~~------~~~~~~~----~~~~~l~--~~d~iIlPG~-g~~~~~~~~l~~~gl~~~i~~ 67 (210)
T PRK14004 1 MIAILDYGMGNIHSCLKAVSLY------TKDFVFT----SDPETIE--NSKALILPGD-GHFDKAMENLNSTGLRSTIDK 67 (210)
T ss_pred CEEEEECCCchHHHHHHHHHHc------CCeEEEE----CCHHHhc--cCCEEEECCC-CchHHHHHHHHHcCcHHHHHH
Confidence 3899999999999999999998 8877665 3456665 6799997555 5543321 13444444
Q ss_pred -hCCCCcee--ehhHHHHHHHhC------------------Ceecccc----ccccccceeEEEcccccccccccCCCCc
Q 037843 88 -LGPTMPLF--CMGLKCIGEALE------------------GRLYVLL----LVSCMGKALVYYNEKEEADGLLAGLSNP 142 (203)
Q Consensus 88 -~~~~~Pil--ClG~Qlla~a~g------------------g~v~~~~----~~~~~g~~~i~~~~~~~~~~lf~~~~~~ 142 (203)
..+++|+| |+|||+|+.+++ ++|.+++ .-++.||..+.... ...+++|+++++.
T Consensus 68 ~~~~~~pilGiC~G~Q~l~~~~~e~~~~~~~~~~~Glg~~~~~v~~~~~~~~~~ph~Gw~~v~~~~-~~~~~lf~~l~~~ 146 (210)
T PRK14004 68 HVESGKPLFGICIGFQILFESSEETNQGTKKEQIEGLGYIKGKIKKFEGKDFKVPHIGWNRLQIRR-KDKSKLLKGIGDQ 146 (210)
T ss_pred HHHcCCCEEEECHhHHHHHHhcccccCCCcCcccCCcceeEEEEEEcCCCCCcCCccCcccceecc-CCCCccccCCCCC
Confidence 56889999 999999999764 5555432 13567887777652 2346799999999
Q ss_pred eEEeecccceeecCCCCCCCeEEEEEcCC-C-cEEEEEeCCCCcEEEEcCCCCCCCCCCCC
Q 037843 143 FTAGRYHGLVIEKDSFRSDELEVTAWTED-G-LIMAARHKKYKHLHGVQFHPESILTSEGK 201 (203)
Q Consensus 143 ~~~~~~H~~~v~~~~l~~~~~~~~a~s~~-~-~v~a~~~~~~~~i~gvQfHPE~~~~~~g~ 201 (203)
+.+++||+|.+.. +..+.+++.+.. + .++++..++ + +||+|||||++. +.|.
T Consensus 147 ~~v~~~HS~~~~~----~~~l~~sa~~~~~g~~~~a~~~~~-~-i~GvQFHPE~s~-~~G~ 200 (210)
T PRK14004 147 SFFYFIHSYRPTG----AEGNAITGLCDYYQEKFPAVVEKE-N-IFGTQFHPEKSH-THGL 200 (210)
T ss_pred CEEEEeceeecCC----CCcceEEEeeeECCEEEEEEEecC-C-EEEEeCCcccCc-hhHH
Confidence 9999999996532 234455555543 3 245666443 4 999999999998 4653
No 55
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=99.94 E-value=3.2e-26 Score=178.58 Aligned_cols=141 Identities=21% Similarity=0.322 Sum_probs=109.2
Q ss_pred CchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhc--cCCCEEEECCCCCCCCC--------------c--c-hH
Q 037843 21 YDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKR--KKPRGVVISPGPGAPQE--------------S--G-IS 81 (203)
Q Consensus 21 ~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~--~~~dgiil~GG~~~~~~--------------~--~-~~ 81 (203)
++++.+++.++++.+ |+.+.++++. .+.+++.. .++|||||+||++...+ . + ..
T Consensus 17 ~~~~~~~~~~~l~~~------G~~~~iv~~~-~~~~~~~~~l~~~dglvl~GG~~~~~~~~~~~~~~~~~~~~~~r~~~~ 89 (189)
T cd01745 17 RDYLNQYYVDAVRKA------GGLPVLLPPV-DDEEDLEQYLELLDGLLLTGGGDVDPPLYGEEPHPELGPIDPERDAFE 89 (189)
T ss_pred HHHHHHHHHHHHHHC------CCEEEEeCCC-CChHHHHHHHhhCCEEEECCCCCCChhhcCCCCCcccCCCChhHHHHH
Confidence 466788899999998 9998888765 23333321 26899999999865321 0 0 12
Q ss_pred HHHHHH-hCCCCcee--ehhHHHHHHHhCCeeccccccccccceeEEEcccccccccccCCCCceEEeecccceeecCCC
Q 037843 82 FRTVLE-LGPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSF 158 (203)
Q Consensus 82 ~~~i~~-~~~~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l 158 (203)
.++++. ++.++||| |+|||+|+.++||++.+.. .++++|++.|..
T Consensus 90 ~~~~~~~~~~~~PilgiC~G~Q~l~~~~Gg~v~~~~-----------------------------~v~~~H~~~v~~--- 137 (189)
T cd01745 90 LALLRAALERGKPILGICRGMQLLNVALGGTLYQDI-----------------------------RVNSLHHQAIKR--- 137 (189)
T ss_pred HHHHHHHHHCCCCEEEEcchHHHHHHHhCCeEEcCC-----------------------------ceechHHHHHhh---
Confidence 455565 46789999 9999999999999986643 467899999986
Q ss_pred CCCCeEEEEEcCCCcEEEEEeCCCCcEEEEcCCCCCCCC--CCC
Q 037843 159 RSDELEVTAWTEDGLIMAARHKKYKHLHGVQFHPESILT--SEG 200 (203)
Q Consensus 159 ~~~~~~~~a~s~~~~v~a~~~~~~~~i~gvQfHPE~~~~--~~g 200 (203)
++++++++|+++++.++|++++++++++|+|||||+..+ ++|
T Consensus 138 ~~~~~~vla~~~d~~vea~~~~~~~~~~gvQfHPE~~~~~~~~~ 181 (189)
T cd01745 138 LADGLRVEARAPDGVIEAIESPDRPFVLGVQWHPEWLADTDPDS 181 (189)
T ss_pred cCCCCEEEEECCCCcEEEEEeCCCCeEEEEecCCCcCcccCchH
Confidence 679999999999999999999873359999999999987 544
No 56
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=99.93 E-value=6e-26 Score=182.14 Aligned_cols=174 Identities=18% Similarity=0.188 Sum_probs=117.5
Q ss_pred EEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcc--cH----HHHhccCCCEEEECCCCCCCCCcchHHHHHHH-hC
Q 037843 17 VIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDEL--TV----AELKRKKPRGVVISPGPGAPQESGISFRTVLE-LG 89 (203)
Q Consensus 17 iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~--~~----~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~-~~ 89 (203)
++|+|.++..++..+..++ +..+.++..+.. .. +.+. ++||||++||++.+...+. ...++. ++
T Consensus 12 ~~day~s~~~~L~~a~~~~------~~~v~~~~i~~~~~~~~~~~~~l~--~~dgivl~GG~~~~~~~~~-~~~i~~~~~ 82 (235)
T cd01746 12 LPDAYLSVLEALKHAGIAL------GVKLEIKWIDSEDLEEENAEEALK--GADGILVPGGFGIRGVEGK-ILAIKYARE 82 (235)
T ss_pred CHHHHHHHHHHHHHHHHHc------CCeeEEEEeChhhcCccchhhhhc--cCCEEEECCCCCCcchhhH-HHHHHHHHH
Confidence 3466677777788777776 666666543321 11 2232 6899999999988776543 344554 56
Q ss_pred CCCcee--ehhHHHHHHHhCCeeccccccc-----cccceeEE--------------------EcccccccccccCCC--
Q 037843 90 PTMPLF--CMGLKCIGEALEGRLYVLLLVS-----CMGKALVY--------------------YNEKEEADGLLAGLS-- 140 (203)
Q Consensus 90 ~~~Pil--ClG~Qlla~a~gg~v~~~~~~~-----~~g~~~i~--------------------~~~~~~~~~lf~~~~-- 140 (203)
.++|+| |+|||+|+.++|+++.+++... ....+++. +....++++++..+.
T Consensus 83 ~~~PvlGIClG~Q~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~h~v~i~~~s~l~~~~g~ 162 (235)
T cd01746 83 NNIPFLGICLGMQLAVIEFARNVLGLPDANSTEFDPDTPHPVVDLMPEQKGVKDLGGTMRLGAYPVILKPGTLAHKYYGK 162 (235)
T ss_pred CCceEEEEEhHHHHHHHHHHHHhcCCccCCccccCCCCCCCEEEECcccccccccCcccccCceEEEECCCChHHHHhCC
Confidence 789999 9999999999999988765321 00111111 111111233334432
Q ss_pred CceEEeecccceeecC---CCCCCCeEEEEEcC-CCcEEEEEeCCCCcEEEEcCCCCCCCCCC
Q 037843 141 NPFTAGRYHGLVIEKD---SFRSDELEVTAWTE-DGLIMAARHKKYKHLHGVQFHPESILTSE 199 (203)
Q Consensus 141 ~~~~~~~~H~~~v~~~---~l~~~~~~~~a~s~-~~~v~a~~~~~~~~i~gvQfHPE~~~~~~ 199 (203)
+...++++|+++|+++ .+..+++.++|++. ++.+++++.+++|+++|+|||||+...+.
T Consensus 163 ~~~~~n~~H~~~v~~~~~~~~~~~~l~v~a~~~ddg~ieaie~~~~pf~lgvQ~HPE~~~~~~ 225 (235)
T cd01746 163 DEVEERHRHRYEVNPEYVDELEEAGLRFSGTDPDGGLVEIVELPDHPFFVGTQFHPEFKSRPL 225 (235)
T ss_pred CEEEEecCcccccCHHHHHHHhhCCeEEEEEeCCCCeEEEEEcCCCCcEEEEECCCCCcCCCC
Confidence 2467889999999653 22368999999997 89999999999997779999999877543
No 57
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.93 E-value=2.9e-25 Score=174.65 Aligned_cols=161 Identities=24% Similarity=0.251 Sum_probs=118.7
Q ss_pred CcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCc-c---hHHHHHHH-
Q 037843 13 NPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQES-G---ISFRTVLE- 87 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~-~---~~~~~i~~- 87 (203)
+||+|||+++++...+.+++++. |+++.+++. .+++. ++|+|||+|| +.+.+. . ...+.+++
T Consensus 1 ~~~~v~~~~~~~~~~~~~~l~~~------G~~~~~~~~----~~~~~--~~d~iii~G~-~~~~~~~~~~~~~~~~i~~~ 67 (200)
T PRK13143 1 MMIVIIDYGVGNLRSVSKALERA------GAEVVITSD----PEEIL--DADGIVLPGV-GAFGAAMENLSPLRDVILEA 67 (200)
T ss_pred CeEEEEECCCccHHHHHHHHHHC------CCeEEEECC----HHHHc--cCCEEEECCC-CCHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999 999888742 34554 6899999774 332221 1 13455665
Q ss_pred hCCCCcee--ehhHHHHHHH------------hCCeeccccc---cccccceeEEEcccccccccccCCCCceEEeeccc
Q 037843 88 LGPTMPLF--CMGLKCIGEA------------LEGRLYVLLL---VSCMGKALVYYNEKEEADGLLAGLSNPFTAGRYHG 150 (203)
Q Consensus 88 ~~~~~Pil--ClG~Qlla~a------------~gg~v~~~~~---~~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~~H~ 150 (203)
.++++|+| |+|+|+|+.+ +||++.+... ..+.|+..+.... .+++|++++ ...++++|+
T Consensus 68 ~~~~~PilgIC~G~q~l~~~~~~g~~~~~lg~~~g~v~~~~~~~~~~~~g~~~v~~~~---~~~l~~~l~-~~~~~~~Hs 143 (200)
T PRK13143 68 ARSGKPFLGICLGMQLLFESSEEGGGVRGLGLFPGRVVRFPAGVKVPHMGWNTVKVVK---DCPLFEGID-GEYVYFVHS 143 (200)
T ss_pred HHcCCCEEEECHHHHHHhhhhccCCCCCCcceeeEEEEEcCCCCCCCeecceEEEEcC---CChhhccCC-CcEEEEEee
Confidence 46789999 9999999986 6788876531 1244777776653 367898884 455788999
Q ss_pred ceeecCCCCCCCeEEEEEcCCC-cEEEEEeCCCCcEEEEcCCCCCCC
Q 037843 151 LVIEKDSFRSDELEVTAWTEDG-LIMAARHKKYKHLHGVQFHPESIL 196 (203)
Q Consensus 151 ~~v~~~~l~~~~~~~~a~s~~~-~v~a~~~~~~~~i~gvQfHPE~~~ 196 (203)
+.+.. ++++.++|+++++ .++++...+ + +||+|||||++.
T Consensus 144 ~~~~~----~~~~~~la~~~~~~~~~~~~~~~-~-~~gvQfHPE~~~ 184 (200)
T PRK13143 144 YYAYP----DDEDYVVATTDYGIEFPAAVCND-N-VFGTQFHPEKSG 184 (200)
T ss_pred eeeCC----CCcceEEEEEcCCCEEEEEEEcC-C-EEEEeCCCccch
Confidence 98864 4678999999764 556666554 4 999999999874
No 58
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.93 E-value=4.1e-25 Score=172.29 Aligned_cols=158 Identities=22% Similarity=0.280 Sum_probs=114.4
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCc----chHHHHHHH
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQES----GISFRTVLE 87 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~----~~~~~~i~~ 87 (203)
|++|.|++....+...+ ++++.. |+.+..++. .+++. ++|||||+||+++..+. ..+.+++++
T Consensus 1 ~m~~~i~~~~g~~~~~~-~~l~~~------g~~~~~~~~----~~~l~--~~dgiii~GG~~~~~~~~~~~~~~~~~i~~ 67 (189)
T PRK13525 1 MMKIGVLALQGAVREHL-AALEAL------GAEAVEVRR----PEDLD--EIDGLILPGGESTTMGKLLRDFGLLEPLRE 67 (189)
T ss_pred CCEEEEEEcccCHHHHH-HHHHHC------CCEEEEeCC----hhHhc--cCCEEEECCCChHHHHHHHHhccHHHHHHH
Confidence 46899999887666554 678777 888877653 34554 58999999998765432 123456666
Q ss_pred -hCCCCcee--ehhHHHHHHHhCCe-----------eccccccccccceeEEEcccccccccccCCCCceEEeeccccee
Q 037843 88 -LGPTMPLF--CMGLKCIGEALEGR-----------LYVLLLVSCMGKALVYYNEKEEADGLLAGLSNPFTAGRYHGLVI 153 (203)
Q Consensus 88 -~~~~~Pil--ClG~Qlla~a~gg~-----------v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v 153 (203)
..+++|+| |+|+|+|+.++|+. +.+...+++.|.. ..+.++.++++.+.++++|+|.|
T Consensus 68 ~~~~g~PilGIC~G~QlL~~~~gg~~~~~lg~~~~~v~~~~~g~~~g~~--------~~~~~~~~~~~~~~~~~~H~d~v 139 (189)
T PRK13525 68 FIASGLPVFGTCAGMILLAKEIEGYEQEHLGLLDITVRRNAFGRQVDSF--------EAELDIKGLGEPFPAVFIRAPYI 139 (189)
T ss_pred HHHCCCeEEEECHHHHHHHhhcccCCCCceeeEEEEEEEccCCCceeeE--------EecccccCCCCCeEEEEEeCcee
Confidence 46789999 99999999999984 3332222222211 11456777777899999999999
Q ss_pred ecCCCCCCCeEEEEEcCCCcEEEEEeCCCCcEEEEcCCCCCCCC
Q 037843 154 EKDSFRSDELEVTAWTEDGLIMAARHKKYKHLHGVQFHPESILT 197 (203)
Q Consensus 154 ~~~~l~~~~~~~~a~s~~~~v~a~~~~~~~~i~gvQfHPE~~~~ 197 (203)
.. +|++++++|+++. .+++++.. ++||+|||||++..
T Consensus 140 ~~---lp~~~~vlA~~~~-~~~~~~~~---~~~g~QfHPE~~~~ 176 (189)
T PRK13525 140 EE---VGPGVEVLATVGG-RIVAVRQG---NILATSFHPELTDD 176 (189)
T ss_pred ec---cCCCcEEEEEcCC-EEEEEEeC---CEEEEEeCCccCCC
Confidence 87 7899999999875 45677653 49999999999764
No 59
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.93 E-value=6.6e-25 Score=172.67 Aligned_cols=165 Identities=21% Similarity=0.280 Sum_probs=118.1
Q ss_pred EEEEeCC-chHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCc----chHHHHHHH-h
Q 037843 15 IVVIDNY-DSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQES----GISFRTVLE-L 88 (203)
Q Consensus 15 i~iid~~-~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~----~~~~~~i~~-~ 88 (203)
|+++++. ..+...+.++++.. |..++++... +.+++. ++|+|||+||++++.+. ..+.+.|++ .
T Consensus 5 vl~~~~~~~e~~~~~~~~l~~~------g~~~~~~~~~--~~~~l~--~~d~iii~GG~~~~~~~~~~~~~~~~~i~~~~ 74 (200)
T PRK13527 5 VLALQGDVEEHIDALKRALDEL------GIDGEVVEVR--RPGDLP--DCDALIIPGGESTTIGRLMKREGILDEIKEKI 74 (200)
T ss_pred EEEECCccHHHHHHHHHHHHhc------CCCeEEEEeC--ChHHhc--cCCEEEECCCcHHHHHHHHhhccHHHHHHHHH
Confidence 4555432 23355788888888 8888877653 345554 68999999998775321 123566666 4
Q ss_pred CCCCcee--ehhHHHHHHHhCCe-eccccccccccceeEEEcc--cc------cccccccCCCCceEEeecccceeecCC
Q 037843 89 GPTMPLF--CMGLKCIGEALEGR-LYVLLLVSCMGKALVYYNE--KE------EADGLLAGLSNPFTAGRYHGLVIEKDS 157 (203)
Q Consensus 89 ~~~~Pil--ClG~Qlla~a~gg~-v~~~~~~~~~g~~~i~~~~--~~------~~~~lf~~~~~~~~~~~~H~~~v~~~~ 157 (203)
..++|+| |+|+|+|+.++|++ +...+ ..++|+.++.... .+ ..+.+|.++++++.++++|++.+..
T Consensus 75 ~~~~pilGIC~G~Qll~~~~gg~~v~~~~-~~~lG~~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~H~~~v~~-- 151 (200)
T PRK13527 75 EEGLPILGTCAGLILLAKEVGDDRVTKTE-QPLLGLMDVTVKRNAFGRQRDSFEAEIDLSGLDGPFHAVFIRAPAITK-- 151 (200)
T ss_pred HCCCeEEEECHHHHHHHhhhcCCccCCCC-CceeeeeEEEEeeccccCccccEEEeEeccccCCcceEEEEccccccc--
Confidence 6789999 99999999999984 44433 4667775554322 11 1234677888899999999999987
Q ss_pred CCCCCeEEEEEcCCCcEEEEEeCCCCcEEEEcCCCCCCCC
Q 037843 158 FRSDELEVTAWTEDGLIMAARHKKYKHLHGVQFHPESILT 197 (203)
Q Consensus 158 l~~~~~~~~a~s~~~~v~a~~~~~~~~i~gvQfHPE~~~~ 197 (203)
+|++++++|+++++.+ +++.. ++||+|||||.+..
T Consensus 152 -lp~~~~~la~~~~~~~-a~~~~---~~~g~QfHPE~~~~ 186 (200)
T PRK13527 152 -VGGDVEVLAKLDDRIV-AVEQG---NVLATAFHPELTDD 186 (200)
T ss_pred -cCCCeEEEEEECCEEE-EEEEC---CEEEEEeCCCCCCC
Confidence 7899999999988754 66643 49999999998754
No 60
>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.
Probab=99.93 E-value=7.5e-25 Score=174.24 Aligned_cols=154 Identities=23% Similarity=0.325 Sum_probs=102.3
Q ss_pred HHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhc--cCCCEEEECCCCCCC--CCcc--------h-------H-HHHH
Q 037843 26 YNLCQYMGELELELSQGYHFEVYRNDELTVAELKR--KKPRGVVISPGPGAP--QESG--------I-------S-FRTV 85 (203)
Q Consensus 26 ~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~--~~~dgiil~GG~~~~--~~~~--------~-------~-~~~i 85 (203)
...++++++. |..+.++++. .+.+++.. ..+|||||+||..+. ..++ . + ..++
T Consensus 27 ~~Yv~~i~~a------G~~pv~ip~~-~~~~~~~~~l~~idGlll~GG~~Di~P~~y~~~~~~~~~~~~~~rd~~e~~l~ 99 (217)
T PF07722_consen 27 ASYVKAIEAA------GGRPVPIPYD-ADDEELDELLDRIDGLLLPGGGSDIDPALYGEEPSPESGYIDPERDIFELALI 99 (217)
T ss_dssp HHHHHHHHHT------T-EEEEE-SS---HHHHHHHHHCSSEEEE---SS-T-GGGGT---BTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc------CCEEEEEccC-CCHHHHHHHHhhcCEEEEcCCccchhHhhcCCcccccCCCcCHHHHHHHHHHH
Confidence 4567778887 8888888875 33433332 168999999998432 1111 0 1 2334
Q ss_pred HH-hCCCCcee--ehhHHHHHHHhCCeecccccc----c-------cccceeEEEcccccccccccCCC--CceEEeecc
Q 037843 86 LE-LGPTMPLF--CMGLKCIGEALEGRLYVLLLV----S-------CMGKALVYYNEKEEADGLLAGLS--NPFTAGRYH 149 (203)
Q Consensus 86 ~~-~~~~~Pil--ClG~Qlla~a~gg~v~~~~~~----~-------~~g~~~i~~~~~~~~~~lf~~~~--~~~~~~~~H 149 (203)
+. .++++||| |+|||+|+.++||++...... . ....+.+.+.. +++++.+. ....++.+|
T Consensus 100 ~~a~~~~~PilGICrG~Q~lnv~~GGtl~q~~~~~~~~~~~~~~~~~~~~h~v~i~~----~s~l~~~~~~~~~~vns~H 175 (217)
T PF07722_consen 100 RNALGRGKPILGICRGMQLLNVAFGGTLYQDIPDQPGFPDHRQHPQDFPSHPVRIVP----GSLLAKILGSEEIEVNSFH 175 (217)
T ss_dssp HHHCCTT--EEEETHHHHHHHHHCCSSEESCCCCSS-EEECEE-S-TS--EEEEEET----TSTCCCTSHHCTEEEEEEE
T ss_pred HHHHhcCCCEEEEcHHHHHHHHHhCCCceeecccCcCcccccccccccccccceecc----CchHHHHhCcCcceeecch
Confidence 44 47899999 999999999999998865421 0 01124455443 45555544 578999999
Q ss_pred cceeecCCCCCCCeEEEEEcCCCcEEEEEeCCCC-cEEEEcCCCC
Q 037843 150 GLVIEKDSFRSDELEVTAWTEDGLIMAARHKKYK-HLHGVQFHPE 193 (203)
Q Consensus 150 ~~~v~~~~l~~~~~~~~a~s~~~~v~a~~~~~~~-~i~gvQfHPE 193 (203)
+++|.+ ++++++++|++.|+.++|++..+++ +++|+|||||
T Consensus 176 hq~v~~---l~~~l~v~A~s~Dg~iEaie~~~~~~~~~GvQwHPE 217 (217)
T PF07722_consen 176 HQAVKP---LGEGLRVTARSPDGVIEAIESPEHKYPILGVQWHPE 217 (217)
T ss_dssp CEEECC---HHCCEEEEEEECTSSEEEEEECCESS-EEEESS-CC
T ss_pred hhhhhc---cCCCceEEEEecCCcEEEEEEcCCCCCEEEEEeCCC
Confidence 999988 7799999999999999999999965 6999999999
No 61
>KOG1224 consensus Para-aminobenzoate (PABA) synthase ABZ1 [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=4.4e-25 Score=188.44 Aligned_cols=180 Identities=26% Similarity=0.477 Sum_probs=132.4
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEE-EeCCcccHHH---Hhc-cCCCEEEECCCCCCCCCc---chHHH
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEV-YRNDELTVAE---LKR-KKPRGVVISPGPGAPQES---GISFR 83 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v-~~~~~~~~~~---l~~-~~~dgiil~GG~~~~~~~---~~~~~ 83 (203)
+.++++||+||||+.++.+++.... |.+.++ ++.+...++. +.. --||+||+++|||+|.-. +...+
T Consensus 14 rl~~LlID~YDSyTfNiy~ll~~~~-----~vp~V~~vh~~~~~~d~~~~l~q~~~FDaIVVgPGPG~P~~a~d~gI~~r 88 (767)
T KOG1224|consen 14 RLRTLLIDNYDSYTFNIYQLLSTIN-----GVPPVVIVHDEWTWEDAYHYLYQDVAFDAIVVGPGPGSPMCAADIGICLR 88 (767)
T ss_pred heeEEEEecccchhhhHHHHHHHhc-----CCCcEEEEeccccCHHHHHHHhhccccceEEecCCCCCCCcHHHHHHHHH
Confidence 5789999999999999999998763 555444 4433222222 221 138999999999999432 22223
Q ss_pred HHHHhCCCCcee--ehhHHHHHHHhCCeeccccccccccc-eeEEEcccccccccccCCCCceEEeecccceeecCCCCC
Q 037843 84 TVLELGPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGK-ALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRS 160 (203)
Q Consensus 84 ~i~~~~~~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~-~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~ 160 (203)
++ ...+++||| |||||.|+.+-|+.|...+ .+.||. +.+++......+.++.|-+..|.+.+||+..+++ ++-
T Consensus 89 l~-~~~~~iPilGICLGfQal~l~hGA~v~~~n-~p~HGrvs~i~~~~~~~f~gi~sg~~~~fK~~RYHSL~in~--~pi 164 (767)
T KOG1224|consen 89 LL-LECRDIPILGICLGFQALGLVHGAHVVHAN-EPVHGRVSGIEHDGNILFSGIPSGRNSDFKVVRYHSLIINS--LPI 164 (767)
T ss_pred HH-HhcCCCceeeeehhhHhHhhhcccceecCC-CcccceeeeEEecCcEEEccCCCCCcccceeEEeEEEEecC--Cch
Confidence 32 335689999 9999999999999999776 688998 8888877544455555556789999999999987 232
Q ss_pred CCeEEEEEc-CCC--cEEEEEeCCCCcEEEEcCCCCCCCCCCCC
Q 037843 161 DELEVTAWT-EDG--LIMAARHKKYKHLHGVQFHPESILTSEGK 201 (203)
Q Consensus 161 ~~~~~~a~s-~~~--~v~a~~~~~~~~i~gvQfHPE~~~~~~g~ 201 (203)
+-+.+++++ +++ .++++.+++.| -||+|||||+..++.|.
T Consensus 165 d~l~il~t~~ddng~ilMsi~~~~fP-hfG~qyHPES~~s~~g~ 207 (767)
T KOG1224|consen 165 DLLPILWTIYDDNGHILMSIMHSSFP-HFGLQYHPESIASTYGS 207 (767)
T ss_pred hhhcceeEeecCCceEEEEeeccCCC-ccceeeChHHhhhhhhH
Confidence 444555555 333 67899999999 79999999999988774
No 62
>COG2071 Predicted glutamine amidotransferases [General function prediction only]
Probab=99.92 E-value=5.8e-25 Score=172.92 Aligned_cols=159 Identities=22% Similarity=0.316 Sum_probs=109.4
Q ss_pred HHHHHhhhhhcCCceEEEEeCC--cccHHHHhccCCCEEEECCCCCCC--CCcc---------------h-HHHHHHH-h
Q 037843 30 QYMGELELELSQGYHFEVYRND--ELTVAELKRKKPRGVVISPGPGAP--QESG---------------I-SFRTVLE-L 88 (203)
Q Consensus 30 ~~l~~~~~~~~~g~~~~v~~~~--~~~~~~l~~~~~dgiil~GG~~~~--~~~~---------------~-~~~~i~~-~ 88 (203)
+|++... .++|+.+ ++|.. ..+..++.. ..|||||||| .++ ..++ . ...+|++ +
T Consensus 30 ~yv~ai~--~aGg~pi-llP~~~d~~~~~~~l~-~iDgliltGg-~nV~P~~YGee~~~~~~~~~p~RD~~E~aLi~~AL 104 (243)
T COG2071 30 DYVDAII--KAGGIPI-LLPALEDPEDARQYLD-LIDGLILTGG-SNVDPSLYGEEPSEKDGPYDPERDAFELALIRAAL 104 (243)
T ss_pred HHHHHHH--HcCCceE-EecCCCCHHHHHHHHh-hccEEEecCC-CcCCHHHcCCCCCcccCCCCccccHHHHHHHHHHH
Confidence 4555542 2446665 45522 223333333 5799999999 432 1111 1 2566776 6
Q ss_pred CCCCcee--ehhHHHHHHHhCCeeccccc------cccc------cceeEEEcccccccccccCCCCc-eEEeeccccee
Q 037843 89 GPTMPLF--CMGLKCIGEALEGRLYVLLL------VSCM------GKALVYYNEKEEADGLLAGLSNP-FTAGRYHGLVI 153 (203)
Q Consensus 89 ~~~~Pil--ClG~Qlla~a~gg~v~~~~~------~~~~------g~~~i~~~~~~~~~~lf~~~~~~-~~~~~~H~~~v 153 (203)
++++||| |+|+|+|+.++||++.+--. .+.. ..+.|..... +.|.+-+++. +.++++|++++
T Consensus 105 e~~iPILgICRG~QllNVa~GGtL~q~i~~~~~~~~H~~~~~~~~~~H~V~i~~~---s~La~i~g~~~~~VNS~HhQaI 181 (243)
T COG2071 105 ERGIPILGICRGLQLLNVALGGTLYQDISEQPGHIDHRQPNPVHIESHEVHIEPG---SKLAKILGESEFMVNSFHHQAI 181 (243)
T ss_pred HcCCCEEEEccchHHHHHHhcCeeehhhhcccccccccCCCCcccceeEEEecCC---ccHHHhcCccceeecchHHHHH
Confidence 8999999 99999999999999886531 1111 1234444332 2343334434 89999999999
Q ss_pred ecCCCCCCCeEEEEEcCCCcEEEEEeCCCCcEEEEcCCCCCCCCCC
Q 037843 154 EKDSFRSDELEVTAWTEDGLIMAARHKKYKHLHGVQFHPESILTSE 199 (203)
Q Consensus 154 ~~~~l~~~~~~~~a~s~~~~v~a~~~~~~~~i~gvQfHPE~~~~~~ 199 (203)
.+ +.++++++|+++|+.+||+++++..|++|||||||+....+
T Consensus 182 k~---La~~L~V~A~a~DG~VEAie~~~~~fvlGVQWHPE~~~~~~ 224 (243)
T COG2071 182 KK---LAPGLVVEARAPDGTVEAVEVKNDAFVLGVQWHPEYLVDTN 224 (243)
T ss_pred HH---hCCCcEEEEECCCCcEEEEEecCCceEEEEecChhhhccCC
Confidence 98 78999999999999999999998678999999999877554
No 63
>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]
Probab=99.92 E-value=5e-25 Score=167.91 Aligned_cols=163 Identities=18% Similarity=0.187 Sum_probs=126.0
Q ss_pred CchHHHHHHHHHHHhhhhhcCCceEEEEeCC---cccHHHHhccCCCEEEECCCCCCCCCcchH----HHHHHHh-CCCC
Q 037843 21 YDSFTYNLCQYMGELELELSQGYHFEVYRND---ELTVAELKRKKPRGVVISPGPGAPQESGIS----FRTVLEL-GPTM 92 (203)
Q Consensus 21 ~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~---~~~~~~l~~~~~dgiil~GG~~~~~~~~~~----~~~i~~~-~~~~ 92 (203)
|++|...++..|.+. |..++.++.. -...+++. +|||+||||+..+..+...| ...++++ ..++
T Consensus 23 yGgy~nvfvsllg~e------ge~wd~frV~~gefP~~~Dl~--ky~gfvIsGS~~dAf~d~dWI~KLcs~~kkld~mkk 94 (245)
T KOG3179|consen 23 YGGYFNVFVSLLGDE------GEQWDLFRVIDGEFPQEEDLE--KYDGFVISGSKHDAFSDADWIKKLCSFVKKLDFMKK 94 (245)
T ss_pred hcCHHHHHHHHhccc------CceeEEEEEecCCCCChhhhh--hhceEEEeCCcccccccchHHHHHHHHHHHHHhhcc
Confidence 456677788888887 8888766532 23355666 68999999998876654433 3444553 4569
Q ss_pred cee--ehhHHHHHHHhCCeeccccccccccceeEEE-cccccccccccCCCCceEEeecccceeecCCCCCCCeEEEEEc
Q 037843 93 PLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYY-NEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWT 169 (203)
Q Consensus 93 Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~~~i~~-~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s 169 (203)
||+ |||||+||.+.||+|.+.+.++..|.-.+.. .........|..++.++.+...|+|.|.. +|++++++|+|
T Consensus 95 kvlGICFGHQiiara~Gg~Vgra~KG~~~~lg~itivk~~~~~~~yFG~~~~~l~IikcHqDevle---~PE~a~llasS 171 (245)
T KOG3179|consen 95 KVLGICFGHQIIARAKGGKVGRAPKGPDLGLGSITIVKDAEKPEKYFGEIPKSLNIIKCHQDEVLE---LPEGAELLASS 171 (245)
T ss_pred ceEEEeccHHHHHHhhCCccccCCCCCcccccceEEEEecccchhhcccchhhhhHHhhcccceec---CCchhhhhccc
Confidence 999 9999999999999999998776666533322 22233456788788889999999999988 88999999999
Q ss_pred CCCcEEEEEeCCCCcEEEEcCCCCCCC
Q 037843 170 EDGLIMAARHKKYKHLHGVQFHPESIL 196 (203)
Q Consensus 170 ~~~~v~a~~~~~~~~i~gvQfHPE~~~ 196 (203)
+.|.++++...+ +++++|.|||++.
T Consensus 172 e~ceve~fs~~~--~~l~fQGHPEyn~ 196 (245)
T KOG3179|consen 172 EKCEVEMFSIED--HLLCFQGHPEYNK 196 (245)
T ss_pred cccceEEEEecc--eEEEecCCchhhH
Confidence 999999999988 5999999999863
No 64
>PRK06186 hypothetical protein; Validated
Probab=99.91 E-value=6.7e-24 Score=168.15 Aligned_cols=179 Identities=16% Similarity=0.205 Sum_probs=114.5
Q ss_pred CcEEEEeCCchHHH---HHHHHHHHhhhhhcCCceEEE--EeCCcccH-HHHhccCCCEEEECCCCCCCCCcchHHHHHH
Q 037843 13 NPIVVIDNYDSFTY---NLCQYMGELELELSQGYHFEV--YRNDELTV-AELKRKKPRGVVISPGPGAPQESGISFRTVL 86 (203)
Q Consensus 13 ~~i~iid~~~~~~~---~l~~~l~~~~~~~~~g~~~~v--~~~~~~~~-~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~ 86 (203)
.+|++|--|..... ++.++|+..+.+. +..+.+ ++.++... +.+. ++|||+++||.|....++++..+-.
T Consensus 2 v~IalVGKY~~~~daY~Sv~eal~ha~~~~--~~~~~i~wi~s~~l~~~~~l~--~~dgilvpgGfg~rg~~Gki~ai~~ 77 (229)
T PRK06186 2 LRIALVGDYNPDVTAHQAIPLALDLAAAVL--GLPVDYEWLPTPEITDPEDLA--GFDGIWCVPGSPYRNDDGALTAIRF 77 (229)
T ss_pred cEEEEEECCcCCcHHHHHHHHHHHHHHHhc--CCeeEEEEEchhhcCChhhHh--hCCeeEeCCCCCcccHhHHHHHHHH
Confidence 46788844432222 2344454443222 555544 44332222 2333 6899999999999888888655444
Q ss_pred HhCCCCcee--ehhHHHHHHHhCCeeccccc--ccccc------------------ceeEEEcccccccccccCCCC--c
Q 037843 87 ELGPTMPLF--CMGLKCIGEALEGRLYVLLL--VSCMG------------------KALVYYNEKEEADGLLAGLSN--P 142 (203)
Q Consensus 87 ~~~~~~Pil--ClG~Qlla~a~gg~v~~~~~--~~~~g------------------~~~i~~~~~~~~~~lf~~~~~--~ 142 (203)
+..+++|+| |+|||++...++.++..... ..+.. .+.+.+.. ++++..+.. .
T Consensus 78 Are~~iP~LGIClGmQ~avIe~arnv~g~~dA~s~E~~~~~~~pvi~~~~~~~~~~~h~v~l~~----~S~l~~iyg~~~ 153 (229)
T PRK06186 78 ARENGIPFLGTCGGFQHALLEYARNVLGWADAAHAETDPEGDRPVIAPLSCSLVEKTGDIRLRP----GSLIARAYGTLE 153 (229)
T ss_pred HHHcCCCeEeechhhHHHHHHHHhhhcCCcCCCcCCCCCCCCCCEEEECccccccCceEEEECC----CCHHHHHhCCCe
Confidence 467899999 99999988888777654331 01110 02333322 344444432 2
Q ss_pred eEEeecccceeecC---CCCCCCeEEEEEcCCCcEEEEEeCCCCcEEEEcCCCCCCCCCC
Q 037843 143 FTAGRYHGLVIEKD---SFRSDELEVTAWTEDGLIMAARHKKYKHLHGVQFHPESILTSE 199 (203)
Q Consensus 143 ~~~~~~H~~~v~~~---~l~~~~~~~~a~s~~~~v~a~~~~~~~~i~gvQfHPE~~~~~~ 199 (203)
....+.|+|.|+.. .+..+|++++|+++|+.+++++.+++||++|+|||||+...+.
T Consensus 154 i~erhrHryeVNs~h~q~i~~~GL~vsa~s~DG~iEaiE~~~hpf~lGVQwHPE~~s~~~ 213 (229)
T PRK06186 154 IEEGYHCRYGVNPEFVAALESGDLRVTGWDEDGDVRAVELPGHPFFVATLFQPERAALAG 213 (229)
T ss_pred eeeeccccEEECHHHHHHHhcCCeEEEEEcCCCCEEEEEeCCCCcEEEEeCCCCccCCCC
Confidence 33345677777642 2346899999999999999999999999999999999987654
No 65
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=99.90 E-value=1.7e-22 Score=178.50 Aligned_cols=166 Identities=18% Similarity=0.231 Sum_probs=119.7
Q ss_pred cCCCCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCc------chH
Q 037843 8 SKNDKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQES------GIS 81 (203)
Q Consensus 8 ~~~~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~------~~~ 81 (203)
+++.+++|+|||++.++..++.++++.+ |+++.+++. ++++. ++|+|||+| .+++... ..+
T Consensus 2 ~~~~~~~i~iiDyG~GN~~sl~~al~~~------G~~v~~v~~----~~~l~--~~D~lIlpG-~gs~~~~m~~L~~~gl 68 (538)
T PLN02617 2 SNSADSEVTLLDYGAGNVRSVRNAIRHL------GFTIKDVQT----PEDIL--NADRLIFPG-VGAFGSAMDVLNNRGM 68 (538)
T ss_pred CCCCCCeEEEEECCCCCHHHHHHHHHHC------CCeEEEECC----hhhhc--cCCEEEECC-CCCHHHHHHHHHHcCH
Confidence 4567899999999999999999999999 999877642 45564 679999965 4443321 113
Q ss_pred HHHHHH-hCCCCcee--ehhHHHHHHHh---------C---Ceeccccc-----cccccceeEEEcccccccccccCCCC
Q 037843 82 FRTVLE-LGPTMPLF--CMGLKCIGEAL---------E---GRLYVLLL-----VSCMGKALVYYNEKEEADGLLAGLSN 141 (203)
Q Consensus 82 ~~~i~~-~~~~~Pil--ClG~Qlla~a~---------g---g~v~~~~~-----~~~~g~~~i~~~~~~~~~~lf~~~~~ 141 (203)
.+.|++ +..++|+| |+|||+|+.++ | |++.+... .++.||..+..... +++|.+++
T Consensus 69 ~~~i~~~i~~g~PvLGIC~G~QlLa~~~~E~g~~~glg~l~G~v~~~~~~~~~~vp~iGw~~V~~~~~---spL~~~l~- 144 (538)
T PLN02617 69 AEALREYIQNDRPFLGICLGLQLLFESSEENGPVEGLGVIPGVVGRFDSSNGLRVPHIGWNALQITKD---SELLDGVG- 144 (538)
T ss_pred HHHHHHHHHcCCCEEEECHHHHHHhhhhhhcCCccCcccccceEEECCccCCCCCCeecceEEEecCC---ChhHhcCC-
Confidence 445555 46789999 99999999873 2 55555421 24578877776443 78998885
Q ss_pred ceEEeecccceeecCCCCCCC-eEEEEEcC--CCcEEEEEeCCCCcEEEEcCCCCCCC
Q 037843 142 PFTAGRYHGLVIEKDSFRSDE-LEVTAWTE--DGLIMAARHKKYKHLHGVQFHPESIL 196 (203)
Q Consensus 142 ~~~~~~~H~~~v~~~~l~~~~-~~~~a~s~--~~~v~a~~~~~~~~i~gvQfHPE~~~ 196 (203)
.+.++++|+|.+.. .+.+ ..++++++ ++.+++++.. ++||+|||||++.
T Consensus 145 ~~~vy~vHSy~v~~---~p~~~~~v~a~~~~g~~~IaAI~~g---nI~GVQFHPE~s~ 196 (538)
T PLN02617 145 GRHVYFVHSYRATP---SDENKDWVLATCNYGGEFIASVRKG---NVHAVQFHPEKSG 196 (538)
T ss_pred CcEEEEEeEEEEEe---cCCCCcEEEEEEccCCCcEEEEEeC---CEEEEEcCCccCc
Confidence 46789999999865 3333 33445443 4588999874 3999999999986
No 66
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=99.89 E-value=9.5e-23 Score=177.68 Aligned_cols=182 Identities=15% Similarity=0.175 Sum_probs=115.6
Q ss_pred CCcEEEEeCCchHH---HHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHh------ccCCCEEEECCCCCCCCCcchHH
Q 037843 12 KNPIVVIDNYDSFT---YNLCQYMGELELELSQGYHFEVYRNDELTVAELK------RKKPRGVVISPGPGAPQESGISF 82 (203)
Q Consensus 12 ~~~i~iid~~~~~~---~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~------~~~~dgiil~GG~~~~~~~~~~~ 82 (203)
..+|+++--|.... .++.++|+..+. ..++.+.+.+.+ .+++. ..++|||||+||+|++...+.+
T Consensus 289 ~v~IalVGKY~~~~daY~SI~eAL~~ag~--~~~~~V~~~~i~---se~i~~~~~~~L~~~dGIiLpGG~G~~~~~g~i- 362 (525)
T TIGR00337 289 EVTIGIVGKYVELKDSYLSVIEALKHAGA--KLDTKVNIKWID---SEDLEEEGAEFLKGVDGILVPGGFGERGVEGKI- 362 (525)
T ss_pred CcEEEEEeCCcCCHHHHHHHHHHHHhCcc--ccCCEEEEEEec---HHHhhhhhhhhhcCCCEEEeCCCCCChhhcChH-
Confidence 47899996554333 356666666610 002344443322 22221 1258999999999998776654
Q ss_pred HHHHH-hCCCCcee--ehhHHHHHHHhCCeecccccccc-----ccceeEEE-ccc-------------------ccccc
Q 037843 83 RTVLE-LGPTMPLF--CMGLKCIGEALEGRLYVLLLVSC-----MGKALVYY-NEK-------------------EEADG 134 (203)
Q Consensus 83 ~~i~~-~~~~~Pil--ClG~Qlla~a~gg~v~~~~~~~~-----~g~~~i~~-~~~-------------------~~~~~ 134 (203)
..++. .++++|+| |+|||+|+.++|+++.++..+.. ...+++.. ... ..+++
T Consensus 363 ~ai~~a~e~~iP~LGIClG~Qll~i~~grnv~gl~~A~s~Ef~~~~~~pVi~l~~~~~~~~~~GGTmRLG~h~v~i~~gS 442 (525)
T TIGR00337 363 LAIKYARENNIPFLGICLGMQLAVIEFARNVLGLKGANSTEFDPETKYPVVDLLPEQKDISDLGGTMRLGLYPCILKPGT 442 (525)
T ss_pred HHHHHHHHcCCCEEEEcHHHHHHHHHHHHHhcCCCCCCccccCCCCCCCeeeccCcccccccCCceeeccceEEEECCCC
Confidence 34444 46789999 99999999999999887652211 01122221 000 01123
Q ss_pred cccCCCC--ceEEeecccceeecC---CCCCCCeEEEEEcCC-CcEEEEEeCCCCcEEEEcCCCCCCCCCC
Q 037843 135 LLAGLSN--PFTAGRYHGLVIEKD---SFRSDELEVTAWTED-GLIMAARHKKYKHLHGVQFHPESILTSE 199 (203)
Q Consensus 135 lf~~~~~--~~~~~~~H~~~v~~~---~l~~~~~~~~a~s~~-~~v~a~~~~~~~~i~gvQfHPE~~~~~~ 199 (203)
++..+.. .....+.|+|.|+.. .+..++++++|++.+ +.+||++.+++||++|+|||||+...+.
T Consensus 443 ~L~~iyG~~~i~erhrHry~VNs~h~q~l~~~GL~vsa~s~Dgg~VEaIE~~~hpfflGVQwHPE~~s~p~ 513 (525)
T TIGR00337 443 LAFKLYGKEEVYERHRHRYEVNNEYREQLENKGLIVSGTSPDGRLVEIIELPDHPFFVACQFHPEFTSRPN 513 (525)
T ss_pred hHHHHhCCCceeecccceEEECHHHHHhhhhCCeEEEEEECCCCEEEEEEECCCCeEEEEecCCCCCCCCC
Confidence 3333332 234457788888753 223479999999987 5899999999998889999999987664
No 67
>PRK05380 pyrG CTP synthetase; Validated
Probab=99.89 E-value=1.7e-22 Score=176.18 Aligned_cols=179 Identities=15% Similarity=0.194 Sum_probs=112.2
Q ss_pred CCcEEEEeCCchHH---HHHHHHHHHhhhhhcCCceEEEEeCCccc------HHHHhccCCCEEEECCCCCCCCCcchHH
Q 037843 12 KNPIVVIDNYDSFT---YNLCQYMGELELELSQGYHFEVYRNDELT------VAELKRKKPRGVVISPGPGAPQESGISF 82 (203)
Q Consensus 12 ~~~i~iid~~~~~~---~~l~~~l~~~~~~~~~g~~~~v~~~~~~~------~~~l~~~~~dgiil~GG~~~~~~~~~~~ 82 (203)
..+|+++--|.... .++.++|+..+.+. ++.+.+...+... .+.+. ++||||++||+|.+...+.+
T Consensus 288 ~v~IalVGKY~~l~DaY~Sv~eAL~hag~~~--~~~v~i~wIdse~l~~~~~~~~L~--~~DGIIlpGGfG~~~~~g~i- 362 (533)
T PRK05380 288 EVTIALVGKYVELPDAYKSVIEALKHAGIAN--DVKVNIKWIDSEDLEEENVAELLK--GVDGILVPGGFGERGIEGKI- 362 (533)
T ss_pred ceEEEEEeCccCCcHHHHHHHHHHHHHHHHc--CCeeEEEEEChhhccCcchhhHhh--cCCEEEecCCCCccccccHH-
Confidence 46788885443322 23445555542211 5566554433221 12233 68999999999987666543
Q ss_pred HHHHH-hCCCCcee--ehhHHHHHHHhCCeeccccc--cccc---------------------------cceeEEEcccc
Q 037843 83 RTVLE-LGPTMPLF--CMGLKCIGEALEGRLYVLLL--VSCM---------------------------GKALVYYNEKE 130 (203)
Q Consensus 83 ~~i~~-~~~~~Pil--ClG~Qlla~a~gg~v~~~~~--~~~~---------------------------g~~~i~~~~~~ 130 (203)
.+++. +++++|+| |+|||+|+.++||++..+.. ..+. |.+++.+..
T Consensus 363 ~~i~~a~e~~iPiLGIClGmQll~va~Ggnv~g~qda~s~E~~~~t~~pvI~~~~~q~~~~~~ggtmrlg~h~v~i~~-- 440 (533)
T PRK05380 363 LAIRYARENNIPFLGICLGMQLAVIEFARNVLGLEDANSTEFDPDTPHPVIDLMPEQKDVSDLGGTMRLGAYPCKLKP-- 440 (533)
T ss_pred HHHHHHHHCCCcEEEEchHHHHHHHHhcccccCcccCcccccCCCCCCCeEeeccccccccccCCcccccceeEEECC--
Confidence 44554 46889999 99999999999999853221 0111 112333322
Q ss_pred cccccccCCCCc--eEEeecccceeecC---CCCCCCeEEEEEcCC-CcEEEEEeCCCCcEEEEcCCCCCCCCCC
Q 037843 131 EADGLLAGLSNP--FTAGRYHGLVIEKD---SFRSDELEVTAWTED-GLIMAARHKKYKHLHGVQFHPESILTSE 199 (203)
Q Consensus 131 ~~~~lf~~~~~~--~~~~~~H~~~v~~~---~l~~~~~~~~a~s~~-~~v~a~~~~~~~~i~gvQfHPE~~~~~~ 199 (203)
++++..+... ..-.+.|+|.|+.. .+...++.++|++.+ +.+++++..++||++|+|||||+...+.
T Consensus 441 --gS~l~~iyg~~~i~ErhrHryeVNs~h~qal~~~GL~vsa~s~DgglVEaIEl~~hpfflGVQwHPE~~s~p~ 513 (533)
T PRK05380 441 --GTLAAEIYGKEEIYERHRHRYEVNNKYREQLEKAGLVFSGTSPDGRLVEIVELPDHPWFVGVQFHPEFKSRPR 513 (533)
T ss_pred --CChHHHHhCCCceeeecccceecCHHHHHHHhhcCeEEEEEcCCCCcEEEEEeCCCCEEEEEeCCCCCCCCCC
Confidence 3344444322 22345677777542 122359999999965 5999999999998889999999987654
No 68
>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.88 E-value=5.8e-22 Score=153.93 Aligned_cols=152 Identities=16% Similarity=0.203 Sum_probs=97.7
Q ss_pred cEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcch------HHHHHHH
Q 037843 14 PIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGI------SFRTVLE 87 (203)
Q Consensus 14 ~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~------~~~~i~~ 87 (203)
||+|||++.++..++.++|+.+ |+++.+++. ++++. ++|+||++ |+|++.+... +.+.|++
T Consensus 1 mi~iidyg~gN~~s~~~al~~~------g~~~~~v~~----~~~l~--~~D~lIlP-G~g~~~~~~~~L~~~gl~~~i~~ 67 (192)
T PRK13142 1 MIVIVDYGLGNISNVKRAIEHL------GYEVVVSNT----SKIID--QAETIILP-GVGHFKDAMSEIKRLNLNAILAK 67 (192)
T ss_pred CEEEEEcCCccHHHHHHHHHHc------CCCEEEEeC----HHHhc--cCCEEEEC-CCCCHHHHHHHHHHCCcHHHHHH
Confidence 4899999999999999999999 999888743 46665 57999885 4555433211 3455555
Q ss_pred hCCCCcee--ehhHHHHHHHh--C---------Ceecccccc---ccccceeEEEcccccccccccCCCCceEEeecccc
Q 037843 88 LGPTMPLF--CMGLKCIGEAL--E---------GRLYVLLLV---SCMGKALVYYNEKEEADGLLAGLSNPFTAGRYHGL 151 (203)
Q Consensus 88 ~~~~~Pil--ClG~Qlla~a~--g---------g~v~~~~~~---~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~ 151 (203)
..++|+| |+|||+|++.. | ++|.+.... +..||..+.. ..++|+ ..+++.|+|
T Consensus 68 -~~g~PvlGIClGmQlL~~~~~eg~~~GLgll~~~V~rf~~~~~vph~GWn~~~~-----~~~l~~-----~~~yFVhSy 136 (192)
T PRK13142 68 -NTDKKMIGICLGMQLMYEHSDEGDASGLGFIPGNISRIQTEYPVPHLGWNNLVS-----KHPMLN-----QDVYFVHSY 136 (192)
T ss_pred -hCCCeEEEECHHHHHHhhhcccCCcCccCceeEEEEECCCCCCCCcccccccCC-----CCcccc-----cEEEEECCC
Confidence 4679999 99999999875 2 222232210 1223322211 133442 357999999
Q ss_pred eeecCCCCCCCeEEEEEcCCCcEEEEEeCCCCcEEEEcCCCCCCC
Q 037843 152 VIEKDSFRSDELEVTAWTEDGLIMAARHKKYKHLHGVQFHPESIL 196 (203)
Q Consensus 152 ~v~~~~l~~~~~~~~a~s~~~~v~a~~~~~~~~i~gvQfHPE~~~ 196 (203)
.+. .++....++.-....+.+++.. +++|+|||||++.
T Consensus 137 ~v~----~~~~v~~~~~yg~~~~~~v~~~---n~~g~QFHPEkS~ 174 (192)
T PRK13142 137 QAP----MSENVIAYAQYGADIPAIVQFN---NYIGIQFHPEKSG 174 (192)
T ss_pred eEC----CCCCEEEEEECCCeEEEEEEcC---CEEEEecCcccCc
Confidence 993 2344444333322245566543 4999999999986
No 69
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=99.88 E-value=2.8e-22 Score=180.07 Aligned_cols=167 Identities=22% Similarity=0.321 Sum_probs=136.4
Q ss_pred CCCCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcchHHHHHHH-
Q 037843 9 KNDKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGISFRTVLE- 87 (203)
Q Consensus 9 ~~~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~- 87 (203)
...+.+|+.+|++. .++..|+|... |+++.++|++ .+..+ .+||||+|++|||+|.-.+.+..-+++
T Consensus 169 ~Gk~~~I~aiDcG~--K~N~IRcL~~R------Ga~vtVvPw~-~~i~~---~~yDGlflSNGPGdPe~~~~~v~~vr~l 236 (1435)
T KOG0370|consen 169 DGKSLRILAIDCGL--KYNQIRCLVKR------GAEVTVVPWD-YPIAK---EEYDGLFLSNGPGDPELCPLLVQNVREL 236 (1435)
T ss_pred CCcccEEEEcccCc--hHHHHHHHHHh------CceEEEecCC-ccccc---cccceEEEeCCCCCchhhHHHHHHHHHH
Confidence 34467899999975 78999999999 9999999986 33332 278999999999999988877666777
Q ss_pred hCCCCcee--ehhHHHHHHHhCCeeccccccccccceeEEEcccccccccccCCCCceEEeecccceeecCCCCCCCeEE
Q 037843 88 LGPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEV 165 (203)
Q Consensus 88 ~~~~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~~~~~~ 165 (203)
+..++|++ |+|||+++.|.|++..+++.+.+..+.+......+ ..+...++|+|.|..++|+ .++..
T Consensus 237 L~~~~PvfGIClGHQllA~AaGakT~KmKyGNRGhNiP~~~~~tG----------rc~ITSQNHGYAVD~~tLp-~gWk~ 305 (1435)
T KOG0370|consen 237 LESNVPVFGICLGHQLLALAAGAKTYKMKYGNRGHNIPCTCRATG----------RCFITSQNHGYAVDPATLP-AGWKP 305 (1435)
T ss_pred HhCCCCeEEEehhhHHHHHhhCCceEEeeccccCCCccceeccCc----------eEEEEecCCceeecccccc-CCCch
Confidence 45569999 99999999999999999987655555565554432 2456678999999988875 89999
Q ss_pred EEEc-CCCcEEEEEeCCCCcEEEEcCCCCCCCCCC
Q 037843 166 TAWT-EDGLIMAARHKKYKHLHGVQFHPESILTSE 199 (203)
Q Consensus 166 ~a~s-~~~~v~a~~~~~~~~i~gvQfHPE~~~~~~ 199 (203)
+-.+ +|+..+++.|..+| ++.+|||||.+..|.
T Consensus 306 lFvN~NDgSNEGI~Hss~P-~fSvQFHPEat~GP~ 339 (1435)
T KOG0370|consen 306 LFVNANDGSNEGIMHSSKP-FFSVQFHPEATPGPH 339 (1435)
T ss_pred heeecccCCCceEecCCCC-ceeeecCCcCCCCCc
Confidence 8888 68899999999998 999999999887664
No 70
>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.
Probab=99.88 E-value=1.2e-21 Score=152.03 Aligned_cols=153 Identities=21% Similarity=0.300 Sum_probs=105.9
Q ss_pred EEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCc----chHHHHHHH-hC
Q 037843 15 IVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQES----GISFRTVLE-LG 89 (203)
Q Consensus 15 i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~----~~~~~~i~~-~~ 89 (203)
|+++.. .+...+ ++++.. |+++..++. .+++. ++|+||++||+....+. ..+.+.|++ ..
T Consensus 3 vl~~qg--~~~e~~-~~l~~~------g~~v~~v~~----~~~l~--~~dgiii~Gg~~~~~~~~~~~~~~~~~i~~~~~ 67 (183)
T cd01749 3 VLALQG--DFREHI-RALERL------GVEVIEVRT----PEDLE--GIDGLIIPGGESTTIGKLLRRTGLLDPLREFIR 67 (183)
T ss_pred EEEecC--CcHHHH-HHHHHC------CCeEEEECC----HHHhc--cCCEEEECCchHHHHHHHHHhCCHHHHHHHHHH
Confidence 444443 334444 788888 999888754 23444 68999999998643321 123455666 46
Q ss_pred CCCcee--ehhHHHHHHHhCC------------eeccccccccccceeEEEcccccccccccCC-CCceEEeecccceee
Q 037843 90 PTMPLF--CMGLKCIGEALEG------------RLYVLLLVSCMGKALVYYNEKEEADGLLAGL-SNPFTAGRYHGLVIE 154 (203)
Q Consensus 90 ~~~Pil--ClG~Qlla~a~gg------------~v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~-~~~~~~~~~H~~~v~ 154 (203)
+++|+| |+|+|+|+.++++ ++.+...++..|+....+ .+.++ ++.+.++++|.+.|.
T Consensus 68 ~g~PvlGiC~G~qlL~~~~~~~~~~~glG~~~~~v~~~~~g~~~g~~~~~l--------~~~~~~~~~~~~~~~h~~~v~ 139 (183)
T cd01749 68 AGKPVFGTCAGLILLAKEVEDQGGQPLLGLLDITVRRNAFGRQVDSFEADL--------DIPGLGLGPFPAVFIRAPVIE 139 (183)
T ss_pred cCCeEEEECHHHHHHHHHhcccCCCCccCceeEEEEeeccccccceEEEcC--------CCCcCCCCccEEEEEECcEEE
Confidence 789999 9999999999998 454443333333322221 23344 367899999999998
Q ss_pred cCCCCCCCeEEEEEcCCCcEEEEEeCCCCcEEEEcCCCCCCCC
Q 037843 155 KDSFRSDELEVTAWTEDGLIMAARHKKYKHLHGVQFHPESILT 197 (203)
Q Consensus 155 ~~~l~~~~~~~~a~s~~~~v~a~~~~~~~~i~gvQfHPE~~~~ 197 (203)
. +|++++++|+++.+. ++++.. ++||+|||||.+..
T Consensus 140 ~---~p~~~~~la~~~~~~-~a~~~~---~~~g~qfHPE~~~~ 175 (183)
T cd01749 140 E---VGPGVEVLAEYDGKI-VAVRQG---NVLATSFHPELTDD 175 (183)
T ss_pred E---cCCCcEEEEecCCEE-EEEEEC---CEEEEEcCCccCCC
Confidence 7 789999999997665 488754 39999999998853
No 71
>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.
Probab=99.86 E-value=8.2e-21 Score=147.36 Aligned_cols=155 Identities=17% Similarity=0.191 Sum_probs=105.5
Q ss_pred cEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCC----cchHHHHHHH-h
Q 037843 14 PIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQE----SGISFRTVLE-L 88 (203)
Q Consensus 14 ~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~----~~~~~~~i~~-~ 88 (203)
||.|+.....+.. ..++|+++ |+++.+++. ++++. ++|+|||+||+++..+ ...+.+.|++ .
T Consensus 1 ~igvl~~qg~~~e-~~~~l~~~------g~~~~~v~~----~~~l~--~~d~liipGG~~~~~~~l~~~~~l~~~i~~~~ 67 (184)
T TIGR03800 1 KIGVLALQGAVRE-HARALEAL------GVEGVEVKR----PEQLD--EIDGLIIPGGESTTLSRLLDKYGMFEPLRNFI 67 (184)
T ss_pred CEEEEEccCCHHH-HHHHHHHC------CCEEEEECC----hHHhc--cCCEEEECCCCHHHHHHHHHhccHHHHHHHHH
Confidence 4666655544444 55889888 999888753 44554 6899999999765421 1224555666 4
Q ss_pred CCCCcee--ehhHHHHHHHhC-----------CeeccccccccccceeEEEcccccccccccCCC-CceEEeecccceee
Q 037843 89 GPTMPLF--CMGLKCIGEALE-----------GRLYVLLLVSCMGKALVYYNEKEEADGLLAGLS-NPFTAGRYHGLVIE 154 (203)
Q Consensus 89 ~~~~Pil--ClG~Qlla~a~g-----------g~v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~~-~~~~~~~~H~~~v~ 154 (203)
++++|+| |+|||+|+.++. +++.+...+.+.+.....++. +++. +.+...+.|.+.|.
T Consensus 68 ~~g~pilGIC~G~qlL~~~~~~~~~~~lg~~~~~v~~~~~g~~~~s~~~~l~~--------~~~~~~~~~~~~~h~~~v~ 139 (184)
T TIGR03800 68 LSGLPVFGTCAGLIMLAKEIIGQKEGYLGLLDMTVERNAYGRQVDSFEAEVDI--------KGVGDDPITGVFIRAPKIV 139 (184)
T ss_pred HcCCcEEEECHHHHHHHhhhccCCCCccCcEEEEEEeeccCCccccEEEEeec--------ccCCCCcceEEEEcCCCcc
Confidence 6789999 999999999973 455554433334443333322 1221 23566689999998
Q ss_pred cCCCCCCCeEEEEEcCCCcEEEEEeCCCCcEEEEcCCCCCCC
Q 037843 155 KDSFRSDELEVTAWTEDGLIMAARHKKYKHLHGVQFHPESIL 196 (203)
Q Consensus 155 ~~~l~~~~~~~~a~s~~~~v~a~~~~~~~~i~gvQfHPE~~~ 196 (203)
. +|++++++|+++++ +.|++.. ++||+|||||++.
T Consensus 140 ~---lp~~~~vla~~~~~-~~a~~~~---~~~gvQfHPE~~~ 174 (184)
T TIGR03800 140 S---VGNGVEILAKVGNR-IVAVRQG---NILVSSFHPELTD 174 (184)
T ss_pred c---CCCCeEEEEEeCCe-eEEEEeC---CEEEEEeCCccCC
Confidence 7 78999999998765 4677654 3999999999874
No 72
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=99.86 E-value=2.8e-21 Score=164.62 Aligned_cols=182 Identities=17% Similarity=0.241 Sum_probs=121.9
Q ss_pred CcEEEEeCCchHHH---HHHHHHHHhhhhhcCCceEEE--EeCCcccH---HHHhccCCCEEEECCCCCCCCCcchHHHH
Q 037843 13 NPIVVIDNYDSFTY---NLCQYMGELELELSQGYHFEV--YRNDELTV---AELKRKKPRGVVISPGPGAPQESGISFRT 84 (203)
Q Consensus 13 ~~i~iid~~~~~~~---~l~~~l~~~~~~~~~g~~~~v--~~~~~~~~---~~l~~~~~dgiil~GG~~~~~~~~~~~~~ 84 (203)
.+|+++--|..... ++..+|+..+.+. ++.+.+ +...+... +++.. .+|||+++||.|....++++..+
T Consensus 289 v~IalVGKYv~l~DaY~Sv~EAL~hag~~~--~~~v~i~wIdse~le~~~~~~~~~-~~dgIlVPGGFG~RG~eGkI~Ai 365 (533)
T COG0504 289 VTIALVGKYVELPDAYKSVIEALKHAGIAL--GVKVNIKWIDSEDLEEENAAELEK-LVDGILVPGGFGYRGVEGKIAAI 365 (533)
T ss_pred eEEEEEECCcCchhHHHHHHHHHHhhhhhc--CCceeeEEEccccccccchhhhhh-cCCEEEeCCCCCcCchHHHHHHH
Confidence 56888854443332 2334555442222 444444 43322221 23332 28999999999999889987666
Q ss_pred HHHhCCCCcee--ehhHHHHHHHhCCeecccccc-----------------------------ccccceeEEEccccccc
Q 037843 85 VLELGPTMPLF--CMGLKCIGEALEGRLYVLLLV-----------------------------SCMGKALVYYNEKEEAD 133 (203)
Q Consensus 85 i~~~~~~~Pil--ClG~Qlla~a~gg~v~~~~~~-----------------------------~~~g~~~i~~~~~~~~~ 133 (203)
-.+.++++|+| |||||++...+..+|..+... .+.|.++..+.. .
T Consensus 366 ~yAREn~iP~lGIClGmQ~aviE~ARnv~Gl~~AnS~Efdp~t~~pVv~l~~eq~~~~~lGGTmRLG~y~~~l~~----g 441 (533)
T COG0504 366 RYARENNIPFLGICLGMQLAVIEFARNVLGLEGANSTEFDPDTKYPVVDLMPEQKDVVDLGGTMRLGAYPCRLKP----G 441 (533)
T ss_pred HHHHhcCCCEEEEchhHHHHHHHHHHHhcCCccCcccccCCCCCCceEEeccccccCCcCCceeeccceeeecCC----C
Confidence 56678999999 999999999877666544310 112223333322 3
Q ss_pred ccccCCCC--ceEEeecccceeecC---CCCCCCeEEEEEcCC-CcEEEEEeCCCCcEEEEcCCCCCCCCCCCC
Q 037843 134 GLLAGLSN--PFTAGRYHGLVIEKD---SFRSDELEVTAWTED-GLIMAARHKKYKHLHGVQFHPESILTSEGK 201 (203)
Q Consensus 134 ~lf~~~~~--~~~~~~~H~~~v~~~---~l~~~~~~~~a~s~~-~~v~a~~~~~~~~i~gvQfHPE~~~~~~g~ 201 (203)
++.+.++. ...-.+.|+|.|+++ .+...|+.++++|.+ ..+++++..++||++|+|||||+..+|..+
T Consensus 442 T~a~~lY~~~~v~ERHRHRYEvN~~y~~~le~~Gl~~sg~s~d~~lvEivE~~~hpfFv~~QfHPEf~SrP~~p 515 (533)
T COG0504 442 TLAAKLYGKDEIYERHRHRYEVNNDYRDQLEKAGLVFSGTSPDGGLVEIVELPDHPFFVATQFHPEFKSRPLRP 515 (533)
T ss_pred cHHHHHhCCCeeeeeccchhhcCHHHHHHHHhCCeEEEEEcCCCCeEEEEEcCCCceEEEEcccccccCCCCCC
Confidence 44444543 344557899999875 456689999999976 589999999999999999999999988754
No 73
>PLN02327 CTP synthase
Probab=99.86 E-value=2.9e-21 Score=168.83 Aligned_cols=139 Identities=16% Similarity=0.193 Sum_probs=95.0
Q ss_pred CCCEEEECCCCCCCCCcchHHHHHHHhCCCCcee--ehhHHHHHHHhCCeecccccc--cccc---ceeEE-Eccc----
Q 037843 62 KPRGVVISPGPGAPQESGISFRTVLELGPTMPLF--CMGLKCIGEALEGRLYVLLLV--SCMG---KALVY-YNEK---- 129 (203)
Q Consensus 62 ~~dgiil~GG~~~~~~~~~~~~~i~~~~~~~Pil--ClG~Qlla~a~gg~v~~~~~~--~~~g---~~~i~-~~~~---- 129 (203)
++||||++||+|++...+.+..+-....+++|+| |+|||+++.++++++..+... .|.. .+++. +..+
T Consensus 362 ~~DGIvvpGGfG~~~~~G~i~ai~~are~~iP~LGIClGmQl~viefaRnvlG~~dAnS~Efdp~t~~pvI~~m~e~~~~ 441 (557)
T PLN02327 362 GADGILVPGGFGDRGVEGKILAAKYARENKVPYLGICLGMQIAVIEFARSVLGLKDANSTEFDPETPNPCVIFMPEGSKT 441 (557)
T ss_pred cCCEEEeCCCCCCcccccHHHHHHHHHHcCCCEEEEcHHHHHHHHHHHHhhcCCcCCCccccCCCCCCCEEEEehhcccc
Confidence 6899999999998877776533222346889999 999999999999988876521 1111 12221 1110
Q ss_pred --------------cc-ccccccCCCC---ceEEeecccceeecC---CCCCCCeEEEEEcCCC-cEEEEEeCCCCcEEE
Q 037843 130 --------------EE-ADGLLAGLSN---PFTAGRYHGLVIEKD---SFRSDELEVTAWTEDG-LIMAARHKKYKHLHG 187 (203)
Q Consensus 130 --------------~~-~~~lf~~~~~---~~~~~~~H~~~v~~~---~l~~~~~~~~a~s~~~-~v~a~~~~~~~~i~g 187 (203)
.. ++++...++. .....+.|+|+|+++ .+..+++.++|++.++ .++++++.++|+++|
T Consensus 442 ~~GGtMRLG~~~~~~~~~~S~l~~iYg~~~~VnerHrHRYeVN~q~v~~le~~gL~vsa~s~dg~~IEaiE~~~~pffvG 521 (557)
T PLN02327 442 HMGGTMRLGSRRTYFQTPDCKSAKLYGNVSFVDERHRHRYEVNPEMVPRLEKAGLSFVGKDETGRRMEIVELPSHPFFVG 521 (557)
T ss_pred cCCceEECCCcccccCCCCCHHHHHhCCccceeeeeccccccCHHHHHHHhhcCcEEEEEcCCCCEEEEEEeCCCCEEEE
Confidence 00 1223333332 234567788999775 2335899999999776 799999999997779
Q ss_pred EcCCCCCCCCCCC
Q 037843 188 VQFHPESILTSEG 200 (203)
Q Consensus 188 vQfHPE~~~~~~g 200 (203)
+|||||+...+..
T Consensus 522 VQfHPE~~s~p~~ 534 (557)
T PLN02327 522 VQFHPEFKSRPGK 534 (557)
T ss_pred EEcCCCCCCCCCC
Confidence 9999999876543
No 74
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=99.84 E-value=1.4e-19 Score=149.29 Aligned_cols=176 Identities=17% Similarity=0.126 Sum_probs=120.3
Q ss_pred CCcEEEEeCCchH---HHHHHHHHHHhhhhhcCCce--EEEEeCCc---------------ccHHHHhccCCCEEEECCC
Q 037843 12 KNPIVVIDNYDSF---TYNLCQYMGELELELSQGYH--FEVYRNDE---------------LTVAELKRKKPRGVVISPG 71 (203)
Q Consensus 12 ~~~i~iid~~~~~---~~~l~~~l~~~~~~~~~g~~--~~v~~~~~---------------~~~~~l~~~~~dgiil~GG 71 (203)
..+|+||+.-..- ...+.|.|... .+. ++.+.... .+.++++..+|||+||||+
T Consensus 35 pl~i~ilNlMp~k~~TE~q~~rll~~~------~~qv~v~~~~~~~h~~~~~~~~hl~~~y~~~~~i~~~~~DG~IITGA 108 (302)
T PRK05368 35 PLKILILNLMPKKIETETQFLRLLGNT------PLQVDIHLLRIDSHESKNTPAEHLENFYCTFEDIKDEKFDGLIITGA 108 (302)
T ss_pred CccEEEEeCCCCCchHHHHHHHHhcCC------CceEEEEEEecCCcCCCCCCHHHHHHhccCHHHhccCCCCEEEEcCC
Confidence 3789999765422 23455655443 334 44443321 1345565568999999999
Q ss_pred CCC--CCCcch-H---HHHHHHh-CCCCcee--ehhHHHHHHHhCCeeccccccccccceeEEEcccccccccccCCCCc
Q 037843 72 PGA--PQESGI-S---FRTVLEL-GPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEADGLLAGLSNP 142 (203)
Q Consensus 72 ~~~--~~~~~~-~---~~~i~~~-~~~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~~~~ 142 (203)
|.. +++... + .++++.. .+.+|+| |+|+|+++.++||...........|......... .++|++++++.
T Consensus 109 p~e~~~fedv~YW~El~~i~~w~~~~~~s~LgICwGaQa~a~algGi~k~~~~~K~~Gv~~~~~~~~--~~pL~~g~~d~ 186 (302)
T PRK05368 109 PVEQLPFEDVDYWDELKEILDWAKTHVTSTLFICWAAQAALYHLYGIPKYTLPEKLSGVFEHRVLDP--HHPLLRGFDDS 186 (302)
T ss_pred CCCCccCCCCchHHHHHHHHHHHHHcCCCEEEEcHHHHHHHHHcCCCccCCCCCceeEEEEEEEcCC--CChhhcCCCCc
Confidence 977 443322 2 2333322 4579999 9999999999999633222124566544444322 47899999999
Q ss_pred eEEeecccceeecCCC-CCCCeEEEEEcCCCcEEEEEeCCCCcEEEEcCCCCCCC
Q 037843 143 FTAGRYHGLVIEKDSF-RSDELEVTAWTEDGLIMAARHKKYKHLHGVQFHPESIL 196 (203)
Q Consensus 143 ~~~~~~H~~~v~~~~l-~~~~~~~~a~s~~~~v~a~~~~~~~~i~gvQfHPE~~~ 196 (203)
|.+.++|...|..+.+ .+++++++|.|+.+.++++..++.+ ++++|+|||++.
T Consensus 187 F~~phSr~~~V~~~~i~~~~~l~vLA~S~~~gv~~~~~~~~r-~~~vQgHPEYd~ 240 (302)
T PRK05368 187 FLVPHSRYTEVREEDIRAATGLEILAESEEAGVYLFASKDKR-EVFVTGHPEYDA 240 (302)
T ss_pred cccceeehhhccHHHhccCCCCEEEecCCCCCeEEEEeCCCC-EEEEECCCCCCH
Confidence 9999998888853322 4689999999999999999986665 999999999975
No 75
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=99.82 E-value=1.5e-19 Score=144.82 Aligned_cols=173 Identities=18% Similarity=0.180 Sum_probs=110.6
Q ss_pred CcEEEEeCCchH-HHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCC--------cchHHH
Q 037843 13 NPIVVIDNYDSF-TYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQE--------SGISFR 83 (203)
Q Consensus 13 ~~i~iid~~~~~-~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~--------~~~~~~ 83 (203)
+||+||++..++ ...+.++|++. |+.+.+++..+. ++. ++|+|||+||+..-.. ...+.+
T Consensus 1 ~~v~Vl~~~G~n~~~~~~~al~~~------G~~~~~i~~~~~---~l~--~~d~lilpGG~~~~d~~~~~~~~~~~~~~~ 69 (227)
T TIGR01737 1 MKVAVIRFPGTNCDRDTVYALRLL------GVDAEIVWYEDG---SLP--DYDGVVLPGGFSYGDYLRAGAIAAASPIMQ 69 (227)
T ss_pred CeEEEEeCCCcCcHHHHHHHHHHC------CCeEEEEecCCC---CCC--CCCEEEECCCCcccccccccchhcchHHHH
Confidence 379999998776 46688999988 999888765422 233 6899999998742111 112345
Q ss_pred HHHH-hCCCCcee--ehhHHHHHHH--hCCeeccccccccccc--eeEEEcccccccccccCCCCceEEee--cccc---
Q 037843 84 TVLE-LGPTMPLF--CMGLKCIGEA--LEGRLYVLLLVSCMGK--ALVYYNEKEEADGLLAGLSNPFTAGR--YHGL--- 151 (203)
Q Consensus 84 ~i~~-~~~~~Pil--ClG~Qlla~a--~gg~v~~~~~~~~~g~--~~i~~~~~~~~~~lf~~~~~~~~~~~--~H~~--- 151 (203)
++++ .+.++||+ |.|+|+|+.+ ++|.+.+.. ..+++. ..++.. ...++++++++....++. .|++
T Consensus 70 ~l~~~~~~g~pvlgIC~G~QlLa~~GlL~G~l~~n~-~~~~~~~~~~~~v~--~~~~~~~~~~~~g~~~~~pi~H~eG~y 146 (227)
T TIGR01737 70 EVREFAEKGVPVLGICNGFQILVEAGLLPGALLPND-SLRFICRWVYLRVE--NADTIFTKNYKKGEVIRIPIAHGEGRY 146 (227)
T ss_pred HHHHHHHcCCEEEEECHHHHHHHHcCCCCCceeecC-CCceEEEeEEEEEC--CCCChhhccCCCCCEEEEEeEcCCcCe
Confidence 5666 46789999 9999999996 888887765 234433 334333 233668888774222222 4433
Q ss_pred eeecC---CCCCCCeEEEEE-c----------CC---CcEEEEEeCCCCcEEEEcCCCCCC-----CCCCC
Q 037843 152 VIEKD---SFRSDELEVTAW-T----------ED---GLIMAARHKKYKHLHGVQFHPESI-----LTSEG 200 (203)
Q Consensus 152 ~v~~~---~l~~~~~~~~a~-s----------~~---~~v~a~~~~~~~~i~gvQfHPE~~-----~~~~g 200 (203)
.++++ .|...+..++-+ + .+ +.++++.+++++ ++|+|||||+. .+++|
T Consensus 147 ~~~~~~l~~l~~~~~i~~~y~d~~g~~~~~~npngs~~~i~~i~~~~~~-~~g~~~HpE~~~~~~~~~~~g 216 (227)
T TIGR01737 147 YADDETLARLESNDQVVFRYCDEDGDVAEEANPNGSVGNIAGIVNERGN-VLGMMPHPERASEKLLGGDDG 216 (227)
T ss_pred EcCHHHHHHHHHCCcEEEEEECCCCCCCCCCCCCCCHHHHcccCCCCCC-EEEEecCchhhcccccCCccc
Confidence 33221 122222222222 2 22 368899999987 99999999999 56655
No 76
>KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=99.73 E-value=1.6e-17 Score=139.88 Aligned_cols=187 Identities=15% Similarity=0.242 Sum_probs=118.0
Q ss_pred CcEEEEeCCchHHHHHH---HHHHHhhhhhcCCceEEEEeCCcc-------cHHHHh-----ccCCCEEEECCCCCCCCC
Q 037843 13 NPIVVIDNYDSFTYNLC---QYMGELELELSQGYHFEVYRNDEL-------TVAELK-----RKKPRGVVISPGPGAPQE 77 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~---~~l~~~~~~~~~g~~~~v~~~~~~-------~~~~l~-----~~~~dgiil~GG~~~~~~ 77 (203)
-+|+++--|.....+.. ++|+....+-...+.+..+...+. ++.... ....|||+++||.|+..-
T Consensus 299 V~IalVGKYt~l~DsY~Sv~KAL~Ha~~~~~~kl~i~wi~s~dLE~~t~~e~~~~~~~aW~~l~~adGilvPGGFG~RGv 378 (585)
T KOG2387|consen 299 VRIALVGKYTKLSDSYLSVVKALEHAALAINRKLEIVWIDSSDLEPETEQEDPRKYHAAWQKLKSADGILVPGGFGDRGV 378 (585)
T ss_pred EEEEEEeccccchHHHHHHHHHHHHHHHHhcccceEEEEehhcccccccccChhHHHHHHHHhccCCeEEeCCcccccch
Confidence 57888876665554433 444433222233455555543111 111110 025799999999999998
Q ss_pred cchHHHHHHHhCCCCcee--ehhHHHHHHHhCCeecccccc------c----------------------cccceeEEEc
Q 037843 78 SGISFRTVLELGPTMPLF--CMGLKCIGEALEGRLYVLLLV------S----------------------CMGKALVYYN 127 (203)
Q Consensus 78 ~~~~~~~i~~~~~~~Pil--ClG~Qlla~a~gg~v~~~~~~------~----------------------~~g~~~i~~~ 127 (203)
++.+.++-.+.++++|+| |||||+.+..|..++..+... + +.|.....+.
T Consensus 379 eG~i~Aak~ARen~iP~LGiCLGmQ~AvIEfaRnvLg~~dAnStEF~p~~~~~vVi~MPE~~~~~mGgtMRLG~R~t~f~ 458 (585)
T KOG2387|consen 379 EGKILAAKWARENKIPFLGICLGMQLAVIEFARNVLGLKDANSTEFDPETKNPVVIFMPEHNKTHMGGTMRLGSRRTVFQ 458 (585)
T ss_pred hHHHHHHHHHHhcCCCeEeeehhhhHHHHHHHHHhhCCCCCCccccCCCCCCcEEEECcCCCcccccceeeecccceeee
Confidence 988765555566889999 999999998887666554310 0 0111111111
Q ss_pred ccccccccccCCCC---ceEEeecccceeecC---CCCCCCeEEEEEcCCC-cEEEEEeCCCCcEEEEcCCCCCCCCCCC
Q 037843 128 EKEEADGLLAGLSN---PFTAGRYHGLVIEKD---SFRSDELEVTAWTEDG-LIMAARHKKYKHLHGVQFHPESILTSEG 200 (203)
Q Consensus 128 ~~~~~~~lf~~~~~---~~~~~~~H~~~v~~~---~l~~~~~~~~a~s~~~-~v~a~~~~~~~~i~gvQfHPE~~~~~~g 200 (203)
.. ++..+.++. ...-.+.|+|+|+++ .+...|+..++.+.++ ..+.++.+++|+++|+|||||+...+.-
T Consensus 459 ~~---~s~~~kLYG~~~~V~ERHRHRyEVNP~~v~~le~~Gl~FvGkd~~g~rmeI~El~~HP~fVg~QfHPE~~srp~k 535 (585)
T KOG2387|consen 459 DK---DSKLRKLYGNVEFVDERHRHRYEVNPEMVKQLEQAGLSFVGKDVTGKRMEIIELESHPFFVGVQFHPEFKSRPDK 535 (585)
T ss_pred cC---chHHHHHhCCchhhhhhhhcceecCHHHHHHHHhcCcEEEeecCCCcEEEEEEcCCCCceeeeccCHHHhcCCCC
Confidence 11 112222221 122346799999875 4566899999999776 6889999999999999999999998875
Q ss_pred CC
Q 037843 201 KT 202 (203)
Q Consensus 201 ~~ 202 (203)
+.
T Consensus 536 ps 537 (585)
T KOG2387|consen 536 PS 537 (585)
T ss_pred CC
Confidence 43
No 77
>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=99.72 E-value=9.5e-17 Score=127.90 Aligned_cols=171 Identities=18% Similarity=0.192 Sum_probs=112.0
Q ss_pred CcEEEEeCCchHH-HHHHHHHH-HhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCC--------CcchHH
Q 037843 13 NPIVVIDNYDSFT-YNLCQYMG-ELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQ--------ESGISF 82 (203)
Q Consensus 13 ~~i~iid~~~~~~-~~l~~~l~-~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~--------~~~~~~ 82 (203)
+||+||.+..++. ..+.++|+ .. |+.+..+...+ .++. ++|+|||+||+..-. ....+.
T Consensus 1 ~~v~Vl~~~G~n~~~d~~~a~~~~~------G~~~~~v~~~~---~~l~--~~D~lvipGG~~~~d~l~~~~~~~~~~~~ 69 (219)
T PRK03619 1 MKVAVIVFPGSNCDRDMARALRDLL------GAEPEYVWHKE---TDLD--GVDAVVLPGGFSYGDYLRCGAIAAFSPIM 69 (219)
T ss_pred CEEEEEecCCcChHHHHHHHHHhcC------CCeEEEEecCc---CCCC--CCCEEEECCCCchhhhhccchhhhchHHH
Confidence 3799999998884 55888998 67 88887765432 2343 689999999864211 112345
Q ss_pred HHHHH-hCCCCcee--ehhHHHHHHH--hCCeeccccccccc--cceeEEEcccccccccccCCCC--ceEEe---eccc
Q 037843 83 RTVLE-LGPTMPLF--CMGLKCIGEA--LEGRLYVLLLVSCM--GKALVYYNEKEEADGLLAGLSN--PFTAG---RYHG 150 (203)
Q Consensus 83 ~~i~~-~~~~~Pil--ClG~Qlla~a--~gg~v~~~~~~~~~--g~~~i~~~~~~~~~~lf~~~~~--~~~~~---~~H~ 150 (203)
+++++ ..+++|++ |.|+|+|+.+ ++|++.+.. ..+. .+..+.+.. ..+++++++.. .+.+. .-|+
T Consensus 70 ~~l~~~~~~g~~ilgIC~G~qlLa~~GLL~g~l~~n~-~~~~~~~~v~v~i~~--~~~~~~~~~~~g~~~~~~~aH~~~r 146 (219)
T PRK03619 70 KAVKEFAEKGKPVLGICNGFQILTEAGLLPGALTRNA-SLKFICRDVHLRVEN--NDTPFTSGYEKGEVIRIPIAHGEGN 146 (219)
T ss_pred HHHHHHHHCCCEEEEECHHHHHHHHcCCCCCeEEEcC-CCcEEEEEEEEEECC--CCChhhcCCCCCCEEEEEEEcCccc
Confidence 56666 46789999 9999999997 899888776 3344 334444432 34678877742 23332 3355
Q ss_pred ceeecC---CCCCCCeEEEEEc---CCC---cEEEEEeCCCCcEEEEcCCCCCCCCC
Q 037843 151 LVIEKD---SFRSDELEVTAWT---EDG---LIMAARHKKYKHLHGVQFHPESILTS 198 (203)
Q Consensus 151 ~~v~~~---~l~~~~~~~~a~s---~~~---~v~a~~~~~~~~i~gvQfHPE~~~~~ 198 (203)
|.++.+ .+...++.++.++ .++ .+.++...+. +++|+|||||+...+
T Consensus 147 ~~~~~~~~~~l~~~~~~~~~~~~~npngs~~~ia~i~~~~~-~~~g~~~HPE~~~~~ 202 (219)
T PRK03619 147 YYADEETLKRLEGNGQVVFRYCDENPNGSVNDIAGIVNEKG-NVLGMMPHPERAVEP 202 (219)
T ss_pred EEECHHHHHHHHhCCcEEEEEcCCCCCCCHHHhcccCCCCC-CEEEEeCCCCccccC
Confidence 555432 2344677766665 444 4566665443 699999999999765
No 78
>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex
Probab=99.64 E-value=1.6e-14 Score=116.28 Aligned_cols=82 Identities=22% Similarity=0.306 Sum_probs=59.7
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCC----cchHHHHHHH
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQE----SGISFRTVLE 87 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~----~~~~~~~i~~ 87 (203)
|++|.||...+++... .++|+.+ |+++.+++. ++++. ++|+|||+||.+.... ...+.+.|++
T Consensus 1 ~m~igVLa~qG~~~e~-~~aL~~l------G~ev~~v~~----~~~L~--~~DgLILPGGfs~~~~~L~~~~gl~~~I~~ 67 (248)
T PLN02832 1 MMAIGVLALQGSFNEH-IAALRRL------GVEAVEVRK----PEQLE--GVSGLIIPGGESTTMAKLAERHNLFPALRE 67 (248)
T ss_pred CcEEEEEeCCCchHHH-HHHHHHC------CCcEEEeCC----HHHhc--cCCEEEeCCCHHHHHHHHHhhcchHHHHHH
Confidence 4589999999887666 4789888 888877643 46666 5799999997653211 1123455565
Q ss_pred -hCCCCcee--ehhHHHHHHHh
Q 037843 88 -LGPTMPLF--CMGLKCIGEAL 106 (203)
Q Consensus 88 -~~~~~Pil--ClG~Qlla~a~ 106 (203)
..+++|+| |+|||+|+...
T Consensus 68 ~v~~g~PvLGiC~GmqlLa~~~ 89 (248)
T PLN02832 68 FVKSGKPVWGTCAGLIFLAERA 89 (248)
T ss_pred HHHcCCCEEEEChhHHHHHHHh
Confidence 35789999 99999999865
No 79
>KOG1559 consensus Gamma-glutamyl hydrolase [Coenzyme transport and metabolism]
Probab=99.63 E-value=8.9e-16 Score=120.61 Aligned_cols=159 Identities=16% Similarity=0.234 Sum_probs=101.6
Q ss_pred CceEEEEeCCcccHHHHh--ccCCCEEEECCCCCCCCCcchHHHH-----HHHh--CCCCcee--ehhHHHHHHHhC--C
Q 037843 42 GYHFEVYRNDELTVAELK--RKKPRGVVISPGPGAPQESGISFRT-----VLEL--GPTMPLF--CMGLKCIGEALE--G 108 (203)
Q Consensus 42 g~~~~v~~~~~~~~~~l~--~~~~dgiil~GG~~~~~~~~~~~~~-----i~~~--~~~~Pil--ClG~Qlla~a~g--g 108 (203)
|++|..+.+++ +.+.+. ..-.+|||++||-....++-++.+. +++. +...||+ |+|+.+|..... .
T Consensus 90 GARViPli~ne-pEe~lfqklelvNGviftGGwak~~dY~~vvkkifnk~le~nDaGehFPvyg~CLGFE~lsmiISqnr 168 (340)
T KOG1559|consen 90 GARVIPLIYNE-PEEILFQKLELVNGVIFTGGWAKRGDYFEVVKKIFNKVLERNDAGEHFPVYGICLGFELLSMIISQNR 168 (340)
T ss_pred CceEEEEecCC-cHHHHHHHHHHhceeEecCcccccccHHHHHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHhcCh
Confidence 99999888863 333221 1147999999996655565444333 2332 4789999 999999987543 3
Q ss_pred eeccccccccccceeEEEccccc-ccccccCCC--------CceEEeecccceeecCCC-----CCCCeEEEEEcCCC--
Q 037843 109 RLYVLLLVSCMGKALVYYNEKEE-ADGLLAGLS--------NPFTAGRYHGLVIEKDSF-----RSDELEVTAWTEDG-- 172 (203)
Q Consensus 109 ~v~~~~~~~~~g~~~i~~~~~~~-~~~lf~~~~--------~~~~~~~~H~~~v~~~~l-----~~~~~~~~a~s~~~-- 172 (203)
.+...- ..+.-..++.+..... .+++|+.+| ..--+.++|.|.+.++++ +..-|.++.++.|+
T Consensus 169 dile~~-d~vd~AssLqF~~nvn~~~t~FQrFPpELLkkL~~dcLvmq~Hk~gisp~nF~~N~~Ls~FFnilTT~~D~~~ 247 (340)
T KOG1559|consen 169 DILERF-DAVDVASSLQFVGNVNIHGTMFQRFPPELLKKLSTDCLVMQNHKFGISPKNFQGNPALSSFFNILTTCTDGNS 247 (340)
T ss_pred hHHHhh-cccccccceeeecccceeehhHhhCCHHHHHHhccchheeeccccccchhhccCCHHHHHHHhheeeecCCCc
Confidence 332211 1111113444443222 244666655 334577899999987644 22345666665332
Q ss_pred --cEEEEEeCCCCcEEEEcCCCCCCCCCCCCCC
Q 037843 173 --LIMAARHKKYKHLHGVQFHPESILTSEGKTK 203 (203)
Q Consensus 173 --~v~a~~~~~~~~i~gvQfHPE~~~~~~g~~~ 203 (203)
.+..++...+| ++|+|||||+...|||..+
T Consensus 248 k~fvSTv~~~kYP-vtgfQWHPEKnafEWgss~ 279 (340)
T KOG1559|consen 248 KTFVSTVESKKYP-VTGFQWHPEKNAFEWGSSD 279 (340)
T ss_pred eEEEEeecceecc-ceeeeecCccCccccccCC
Confidence 68889999999 9999999999999999753
No 80
>PRK13526 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.58 E-value=7.9e-14 Score=106.88 Aligned_cols=154 Identities=12% Similarity=0.158 Sum_probs=103.5
Q ss_pred CcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCC--C--CcchHHHHHHHh
Q 037843 13 NPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAP--Q--ESGISFRTVLEL 88 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~--~--~~~~~~~~i~~~ 88 (203)
.+|.|+...+.+.. -.++++.+ |+++.+++ +++++. ++|+|||+||.+.. . ....+.+.|+++
T Consensus 3 ~~igVLalqG~~~E-h~~al~~l------G~~v~~v~----~~~~l~--~~D~LILPGG~~t~~~~ll~~~~l~~~Ik~~ 69 (179)
T PRK13526 3 QKVGVLAIQGGYQK-HADMFKSL------GVEVKLVK----FNNDFD--SIDRLVIPGGESTTLLNLLNKHQIFDKLYNF 69 (179)
T ss_pred cEEEEEECCccHHH-HHHHHHHc------CCcEEEEC----CHHHHh--CCCEEEECCChHHHHHHHhhhcCcHHHHHHH
Confidence 67999998888876 55688888 88877654 456666 67999999985542 1 112356667775
Q ss_pred CCCCcee--ehhHHHHHHH---hC---CeeccccccccccceeEEEcccccccccccCCCCceEEeecccceeecCCCCC
Q 037843 89 GPTMPLF--CMGLKCIGEA---LE---GRLYVLLLVSCMGKALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRS 160 (203)
Q Consensus 89 ~~~~Pil--ClG~Qlla~a---~g---g~v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~ 160 (203)
.+++|++ |.|+|+|+.. || ++|.++..+.... ++... --+.++ ++...+...-.|.. ..
T Consensus 70 ~~~kpilGICaG~qlL~~~s~~Lg~idg~V~Rn~~Grq~~----sf~~~----~~~~~~--~~~~vFiRAP~i~~---~~ 136 (179)
T PRK13526 70 CSSKPVFGTCAGSIILSKGEGYLNLLDLEVQRNAYGRQVD----SFVAD----ISFNDK--NITGVFIRAPKFIV---VG 136 (179)
T ss_pred HcCCcEEEEcHHHHHHHccCCCCCCccEEEEEcCCCCccc----eeeee----cCcCCc--eEEEEEEcCceEeE---cC
Confidence 4468999 9999999983 33 5666655322111 11110 001122 36667777777776 56
Q ss_pred CCeEEEEEcCCCcEEEEEeCCCCcEEEEcCCCCCCC
Q 037843 161 DELEVTAWTEDGLIMAARHKKYKHLHGVQFHPESIL 196 (203)
Q Consensus 161 ~~~~~~a~s~~~~v~a~~~~~~~~i~gvQfHPE~~~ 196 (203)
++.+++|+-++ .+-+++.. +++++-||||.+.
T Consensus 137 ~~v~vla~~~~-~~v~v~q~---~~l~~~FHPElt~ 168 (179)
T PRK13526 137 NQVDILSKYQN-SPVLLRQA---NILVSSFHPELTQ 168 (179)
T ss_pred CCcEEEEEECC-EEEEEEEC---CEEEEEeCCccCC
Confidence 89999998854 45566665 3999999999874
No 81
>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]
Probab=99.58 E-value=8.5e-15 Score=120.29 Aligned_cols=165 Identities=16% Similarity=0.267 Sum_probs=110.5
Q ss_pred CcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCc-c-----hHHHHHH
Q 037843 13 NPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQES-G-----ISFRTVL 86 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~-~-----~~~~~i~ 86 (203)
+-|.+||++.++.+++.++++.+ |.++..+. ++.++. +.|-+|+ +|.|+.... + -..+-++
T Consensus 2 ~vv~~ld~~agn~~si~nal~hl------g~~i~~v~----~P~DI~--~a~rLIf-PGVGnfg~~~D~L~~~Gf~eplr 68 (541)
T KOG0623|consen 2 SVVTLLDYGAGNVRSIRNALRHL------GFSIKDVQ----TPGDIL--NADRLIF-PGVGNFGPAMDVLNRTGFAEPLR 68 (541)
T ss_pred ceEEEEecCCccHHHHHHHHHhc------Cceeeecc----Cchhhc--cCceEee-cCcccchHHHHHHhhhhhHHHHH
Confidence 45789999999999999999999 99987653 456676 4588988 666664321 1 1245566
Q ss_pred H-hCCCCcee--ehhHHHHHHH------------hCCeeccccc----cccccceeEEEcccccccccccCCCCceEEee
Q 037843 87 E-LGPTMPLF--CMGLKCIGEA------------LEGRLYVLLL----VSCMGKALVYYNEKEEADGLLAGLSNPFTAGR 147 (203)
Q Consensus 87 ~-~~~~~Pil--ClG~Qlla~a------------~gg~v~~~~~----~~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~ 147 (203)
+ ...++|++ |.|.|+|... +-|.|.+... -+..||.....-. +..|-+....-.+|+
T Consensus 69 ~YiesgkPfmgicvGlQaLF~gSvE~p~skGLgvipg~v~RFD~s~k~VPhIGWNsc~v~s----d~effg~~p~~~~YF 144 (541)
T KOG0623|consen 69 KYIESGKPFMGICVGLQALFDGSVENPPSKGLGVIPGIVGRFDASAKIVPHIGWNSCQVGS----DSEFFGDVPNRHVYF 144 (541)
T ss_pred HHHhcCCCeEeehhhHHHHhcccccCCCcCcccccccceecccCCCCcCCcccccccccCC----cccccccCCCceEEE
Confidence 6 47889999 9999999752 1133333321 2356665444332 234445444567899
Q ss_pred cccceeec--CCCCCCCeEEEEEc--CCCcEEEEEeCCCCcEEEEcCCCCCCCC
Q 037843 148 YHGLVIEK--DSFRSDELEVTAWT--EDGLIMAARHKKYKHLHGVQFHPESILT 197 (203)
Q Consensus 148 ~H~~~v~~--~~l~~~~~~~~a~s--~~~~v~a~~~~~~~~i~gvQfHPE~~~~ 197 (203)
.|+|-... .+++++++++.... +..++.+++.. +++++|||||.+..
T Consensus 145 VHSyl~~ek~~~len~~wkiat~kYG~E~Fi~ai~kn---N~~AtQFHPEKSG~ 195 (541)
T KOG0623|consen 145 VHSYLNREKPKSLENKDWKIATCKYGSESFISAIRKN---NVHATQFHPEKSGE 195 (541)
T ss_pred EeeecccccccCCCCCCceEeeeccCcHHHHHHHhcC---ceeeEecccccccc
Confidence 99995533 25667788764443 23467787654 49999999999864
No 82
>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase. Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site
Probab=99.43 E-value=3.5e-12 Score=102.94 Aligned_cols=175 Identities=15% Similarity=0.127 Sum_probs=105.6
Q ss_pred EEEe-CCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHH--HHhccCCCEEEECCCCCCCCCc--------ch-HHH
Q 037843 16 VVID-NYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVA--ELKRKKPRGVVISPGPGAPQES--------GI-SFR 83 (203)
Q Consensus 16 ~iid-~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~--~l~~~~~dgiil~GG~~~~~~~--------~~-~~~ 83 (203)
+||- .+......+.++|++. |+.+.+++..+.... ++. ++|+|||+||+...... .. ..+
T Consensus 2 ~vl~~pG~n~~~~~~~al~~a------G~~v~~v~~~~~~~~~~~l~--~~d~liipGG~~~~d~l~~~~~~~~~~~~~~ 73 (238)
T cd01740 2 AVLRFPGSNCDRDMAYAFELA------GFEAEDVWHNDLLAGRKDLD--DYDGVVLPGGFSYGDYLRAGAIAAASPLLME 73 (238)
T ss_pred EEEEcCCcCCHHHHHHHHHHc------CCCEEEEeccCCccccCCHh--hCCEEEECCCCCcccccccccccccChhHHH
Confidence 4553 3444456788899888 999988876422111 232 68999999997432111 11 445
Q ss_pred HHHH-hCCCCcee--ehhHHHHHHH--hCCeeccccccccccce----eEEEcccccccccccC--CCCceEEeecccce
Q 037843 84 TVLE-LGPTMPLF--CMGLKCIGEA--LEGRLYVLLLVSCMGKA----LVYYNEKEEADGLLAG--LSNPFTAGRYHGLV 152 (203)
Q Consensus 84 ~i~~-~~~~~Pil--ClG~Qlla~a--~gg~v~~~~~~~~~g~~----~i~~~~~~~~~~lf~~--~~~~~~~~~~H~~~ 152 (203)
++++ ..+++|+| |.|+|+|+.+ +++++...+. .+.... -+........+.++.. ....+.++..|++.
T Consensus 74 ~l~~~~~~g~pvlGIC~G~QlL~~~gll~g~~~~~~~-~~~~~~~~~~~v~~~v~~~~si~t~~~~~g~~l~~~vaHgeG 152 (238)
T cd01740 74 EVKEFAERGGLVLGICNGFQILVELGLLPGALIRNKG-LKFICRWQNRFVTLRVENNDSPFTKGYMEGEVLRIPVAHGEG 152 (238)
T ss_pred HHHHHHhCCCeEEEECcHHHHHHHcCCCccccccCCC-CceeccccCceEEEEEcCCCCceecCCCCCCEEEEEeECCce
Confidence 6666 46789999 9999999997 8888866542 222111 1222222223556665 33567788888762
Q ss_pred --eec-C---CCCCCCeEEEE------------EcCCC---cEEEEEeCCCCcEEEEcCCCCCCCCCCC
Q 037843 153 --IEK-D---SFRSDELEVTA------------WTEDG---LIMAARHKKYKHLHGVQFHPESILTSEG 200 (203)
Q Consensus 153 --v~~-~---~l~~~~~~~~a------------~s~~~---~v~a~~~~~~~~i~gvQfHPE~~~~~~g 200 (203)
+.. + .+...+-.+-. .+.++ .|+++...+.+ ++|...|||+...++.
T Consensus 153 ~~~~~~~~~~~l~~~~~i~~y~~~~~~~~~~yp~NPnGs~~~iAgi~~~~Gr-vlglMphPer~~~~~q 220 (238)
T cd01740 153 RFYADDETLAELEENGQIAQYVDDDGNVTERYPANPNGSLDGIAGICNEDGR-VLGMMPHPERAVEPWQ 220 (238)
T ss_pred eeEcCHHHHHHHHHCCCEEEEEcCCCCccccCCCCCCCChhcceEEEcCCCC-EEEEcCChHHcccccc
Confidence 111 1 11112211101 12233 48999999987 9999999999987754
No 83
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=99.31 E-value=4.9e-11 Score=97.24 Aligned_cols=177 Identities=16% Similarity=0.155 Sum_probs=102.9
Q ss_pred CCcEEEEeCCchH-HHHHHHHHHHhhhhhcCCceEEEEeCCccc--HHHHhccCCCEEEECCCCCCCC--Ccc-----h-
Q 037843 12 KNPIVVIDNYDSF-TYNLCQYMGELELELSQGYHFEVYRNDELT--VAELKRKKPRGVVISPGPGAPQ--ESG-----I- 80 (203)
Q Consensus 12 ~~~i~iid~~~~~-~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~--~~~l~~~~~dgiil~GG~~~~~--~~~-----~- 80 (203)
++||+||...+++ .....++|+.. |+.+.+++..+.. ...+. ++|+|||+||.+... ..+ .
T Consensus 3 ~~kvaVl~~pG~n~d~e~~~Al~~a------G~~v~~v~~~~~~~~~~~l~--~~DgLvipGGfs~gD~l~~g~~~~~~l 74 (261)
T PRK01175 3 SIRVAVLRMEGTNCEDETVKAFRRL------GVEPEYVHINDLAAERKSVS--DYDCLVIPGGFSAGDYIRAGAIFAARL 74 (261)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHC------CCcEEEEeeccccccccchh--hCCEEEECCCCCcccccccchhhHHHH
Confidence 4689999875554 55677888888 9888887653211 11233 689999999964211 121 1
Q ss_pred ---HHHHHHH-hCCCCcee--ehhHHHHHHH--hCC----------eeccccccc-cccceeEEEcccccccccccCCCC
Q 037843 81 ---SFRTVLE-LGPTMPLF--CMGLKCIGEA--LEG----------RLYVLLLVS-CMGKALVYYNEKEEADGLLAGLSN 141 (203)
Q Consensus 81 ---~~~~i~~-~~~~~Pil--ClG~Qlla~a--~gg----------~v~~~~~~~-~~g~~~i~~~~~~~~~~lf~~~~~ 141 (203)
+.+.|++ +++++|+| |.|+|+|+.+ +.| .+.++.... +--|..++... .++++++++..
T Consensus 75 ~~~l~~~Ik~f~~~gkpVLGICnG~QlLa~~GlLpg~~~~~~~~~~~L~~N~s~~f~~~~~~~~v~~--~~s~~~~~~~~ 152 (261)
T PRK01175 75 KAVLRKDIEEFIDEGYPIIGICNGFQVLVELGLLPGFDEIAEKPEMALTVNESNRFECRPTYLKKEN--RKCIFTKLLKK 152 (261)
T ss_pred HHHHHHHHHHHHHCCCeEEEECHHHHHHHHCCCCCCCCccccCCcceEeecCCCCeEEeeeEEEECC--CCChhHhccCC
Confidence 1244555 47889999 9999999984 323 222222111 11123333332 33566665542
Q ss_pred -ceEEeecccce--e-ecC----CCCCCCeEEEEE------------cCC---CcEEEEEeCCCCcEEEEcCCCCCCCCC
Q 037843 142 -PFTAGRYHGLV--I-EKD----SFRSDELEVTAW------------TED---GLIMAARHKKYKHLHGVQFHPESILTS 198 (203)
Q Consensus 142 -~~~~~~~H~~~--v-~~~----~l~~~~~~~~a~------------s~~---~~v~a~~~~~~~~i~gvQfHPE~~~~~ 198 (203)
.+.+...|++. + ..+ .|...+..++-+ +.+ ..|+++...+.+ ++|...|||+...+
T Consensus 153 ~~~~~piah~eG~~~~~~~~~l~~l~~~~~i~~~Y~d~~g~~~~~p~NPNGs~~~IAGi~~~~G~-vlglMpHPEr~~~~ 231 (261)
T PRK01175 153 DVFQVPVAHAEGRVVFSEEEILERLIENDQIVFRYVDENGNYAGYPWNPNGSIYNIAGITNEKGN-VIGLMPHPERAFYG 231 (261)
T ss_pred CEEEEeeEcCCcceEeCCHHHHHHHHHCCcEEEEEeCCCCCCCCCCCCCCCChhhcceeECCCCC-EEEEcCCHHHhhch
Confidence 23334456442 2 111 122234444433 222 258899999987 99999999998876
Q ss_pred C
Q 037843 199 E 199 (203)
Q Consensus 199 ~ 199 (203)
+
T Consensus 232 ~ 232 (261)
T PRK01175 232 Y 232 (261)
T ss_pred h
Confidence 5
No 84
>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]
Probab=99.22 E-value=8.3e-10 Score=83.93 Aligned_cols=158 Identities=21% Similarity=0.288 Sum_probs=93.3
Q ss_pred CcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCC-----CCcchHHHHHHH
Q 037843 13 NPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAP-----QESGISFRTVLE 87 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~-----~~~~~~~~~i~~ 87 (203)
++|.||...+.+...+. .++++. |+.+..++ .++++. ..||+||+||-+.. .+++...++.+.
T Consensus 1 m~IGVLalQG~v~EH~~-~l~~~~-----~~e~~~Vk----~~~dL~--~~d~LIiPGGESTTi~rL~~~~gl~e~l~~~ 68 (194)
T COG0311 1 MKIGVLALQGAVEEHLE-ALEKAG-----GAEVVEVK----RPEDLE--GVDGLIIPGGESTTIGRLLKRYGLLEPLREF 68 (194)
T ss_pred CeEEEEEecccHHHHHH-HHHhhc-----CCceEEEc----CHHHhc--cCcEEEecCccHHHHHHHHHHcCcHHHHHHH
Confidence 46778876666655543 455551 36665553 467877 57999999997542 123333333333
Q ss_pred hCCCCcee--ehhHHHHHHHhC-Ce-----------eccccccccccceeEEEcccccccccccCCCC--ceEEeecccc
Q 037843 88 LGPTMPLF--CMGLKCIGEALE-GR-----------LYVLLLVSCMGKALVYYNEKEEADGLLAGLSN--PFTAGRYHGL 151 (203)
Q Consensus 88 ~~~~~Pil--ClG~Qlla~a~g-g~-----------v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~~~--~~~~~~~H~~ 151 (203)
..+++|+| |-||-+|+...- +. |.|+. .|.+.-+++.+ --++++.. .+...+....
T Consensus 69 ~~~G~Pv~GTCAGlIlLakei~~~~~~~~Lg~mdi~V~RNA----fGRQ~dSFe~~----~di~~~~~~~~~~avFIRAP 140 (194)
T COG0311 69 IADGLPVFGTCAGLILLAKEILDGPEQPLLGLLDVTVRRNA----FGRQVDSFETE----LDIEGFGLPFPFPAVFIRAP 140 (194)
T ss_pred HHcCCceEEechhhhhhhhhhcCCCCCcccceEEEEEEccc----cccccccceee----EEeecccCCCcceEEEEEcc
Confidence 56799999 999999997543 21 11111 22211111110 01222222 2555667777
Q ss_pred eeecCCCCCCCeEEEEEcCCCcEEEEEeCCCCcEEEEcCCCCCCCC
Q 037843 152 VIEKDSFRSDELEVTAWTEDGLIMAARHKKYKHLHGVQFHPESILT 197 (203)
Q Consensus 152 ~v~~~~l~~~~~~~~a~s~~~~v~a~~~~~~~~i~gvQfHPE~~~~ 197 (203)
.|.. ..++.+++|+-++ .+-+++.. +++++-||||.+..
T Consensus 141 ~I~~---vg~~V~vLa~l~~-~iVav~qg---n~LatsFHPELT~D 179 (194)
T COG0311 141 VIEE---VGDGVEVLATLDG-RIVAVKQG---NILATSFHPELTDD 179 (194)
T ss_pred eeeh---hcCcceEeeeeCC-EEEEEEeC---CEEEEecCccccCC
Confidence 7766 4468999998866 45555554 39999999998753
No 85
>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=99.20 E-value=6.1e-10 Score=87.42 Aligned_cols=174 Identities=17% Similarity=0.253 Sum_probs=103.7
Q ss_pred CCCcEEEEeCCchHH-HHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCC--CCCCcch------H
Q 037843 11 DKNPIVVIDNYDSFT-YNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPG--APQESGI------S 81 (203)
Q Consensus 11 ~~~~i~iid~~~~~~-~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~--~~~~~~~------~ 81 (203)
+++||+||-.-.++. .-...+++.+ |.++..++..+..... ++|+||++||.+ +.-..+. +
T Consensus 1 ~~~kvaVi~fpGtN~d~d~~~A~~~a------G~~~~~V~~~d~~~~~----~~d~vv~pGGFSyGDyLr~Gaiaa~~~v 70 (231)
T COG0047 1 ARPKVAVLRFPGTNCDYDMAAAFERA------GFEAEDVWHSDLLLGR----DFDGVVLPGGFSYGDYLRAGAIAAIAPV 70 (231)
T ss_pred CCceEEEEEcCCcCchHHHHHHHHHc------CCCceEEEeeecccCC----CccEEEEcCCCCcccccCcchHHhhHHH
Confidence 368999997766653 3467788877 8888877654222211 589999999974 2222333 2
Q ss_pred HHHHHH-hCCCCcee--ehhHHHHHHH--hCCeeccccccccccc-eeEEEcccccccccccCCC--CceEEeecccce-
Q 037843 82 FRTVLE-LGPTMPLF--CMGLKCIGEA--LEGRLYVLLLVSCMGK-ALVYYNEKEEADGLLAGLS--NPFTAGRYHGLV- 152 (203)
Q Consensus 82 ~~~i~~-~~~~~Pil--ClG~Qlla~a--~gg~v~~~~~~~~~g~-~~i~~~~~~~~~~lf~~~~--~~~~~~~~H~~~- 152 (203)
.+.+++ +++++|+| |-|+|+|.++ +.|...++........ ..++.. ..++++++++. +.+.+--.|+..
T Consensus 71 ~~~v~~~a~~g~~vLGICNGfQiL~e~gLlPGal~~N~s~~F~cr~v~l~V~--~~~t~ft~~~~~g~~i~ipVAHgEGr 148 (231)
T COG0047 71 MDEVREFAEKGKPVLGICNGFQILSEAGLLPGALTRNESLRFECRWVYLRVE--NNNTPFTSGYEGGEVIPIPVAHGEGR 148 (231)
T ss_pred HHHHHHHHHCCCeEEEEcchhHHHHHcCcCCcceecCCCCceEEEEEEEEEe--cCCCHHHHhcCCCceEEEEEeeccee
Confidence 444555 46899999 9999999964 5576666652211111 333333 22344555543 234555556442
Q ss_pred --eecCC---CCCCCeEEEEEc-----------CCC---cEEEEEeCCCCcEEEEcCCCCCCCC
Q 037843 153 --IEKDS---FRSDELEVTAWT-----------EDG---LIMAARHKKYKHLHGVQFHPESILT 197 (203)
Q Consensus 153 --v~~~~---l~~~~~~~~a~s-----------~~~---~v~a~~~~~~~~i~gvQfHPE~~~~ 197 (203)
++.+. |..++-.++-+. .++ .|+++...+.+ ++|..=||||...
T Consensus 149 ~~~~~~~l~~l~~ngqvvfrY~d~~G~~~~~~NPNGS~~~IaGI~n~~G~-V~gmMPHPERa~~ 211 (231)
T COG0047 149 YYADDETLAELEENGQVVFRYVDNNGETEEYANPNGSVNGIAGITNEDGN-VLGMMPHPERASE 211 (231)
T ss_pred EEccHHHHHHHhhCCeEEEEEecCCCceeeeeCCCCChhhceeEEcCCCC-EEEecCCchhhhh
Confidence 22111 222222333222 233 58889888886 9999999999764
No 86
>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A.
Probab=99.01 E-value=4.9e-09 Score=85.35 Aligned_cols=180 Identities=18% Similarity=0.163 Sum_probs=97.2
Q ss_pred CCcEEEEeCCchH-HHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCC--cch--------
Q 037843 12 KNPIVVIDNYDSF-TYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQE--SGI-------- 80 (203)
Q Consensus 12 ~~~i~iid~~~~~-~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~--~~~-------- 80 (203)
++||+|+-..+++ ...+..+|+.. |.++..+...+...++....++|+|+|+||.+.-+. .+.
T Consensus 1 kpkV~Vl~~pGtNce~e~~~A~~~a------G~~~~~v~~~dl~~~~~~l~~~~~lvipGGFS~gD~l~sg~~~a~~~~~ 74 (259)
T PF13507_consen 1 KPKVAVLRFPGTNCERETAAAFENA------GFEPEIVHINDLLSGESDLDDFDGLVIPGGFSYGDYLRSGAIAAARLLF 74 (259)
T ss_dssp --EEEEEE-TTEEEHHHHHHHHHCT------T-EEEEEECCHHHTTS--GCC-SEEEE-EE-GGGGTTSTTHHHHHHHCC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHc------CCCceEEEEEecccccCchhhCcEEEECCccCccccchHHHHHHHHhhc
Confidence 5789999766655 56688899988 999988775432111112227899999999753221 222
Q ss_pred ---HHHHHHH-hCC-CCcee--ehhHHHHHHH--hCC----------eeccccccc-cccceeEEEcccccccccccCCC
Q 037843 81 ---SFRTVLE-LGP-TMPLF--CMGLKCIGEA--LEG----------RLYVLLLVS-CMGKALVYYNEKEEADGLLAGLS 140 (203)
Q Consensus 81 ---~~~~i~~-~~~-~~Pil--ClG~Qlla~a--~gg----------~v~~~~~~~-~~g~~~i~~~~~~~~~~lf~~~~ 140 (203)
+.+.+++ +++ +.|+| |-|+|+|.+. +.+ .+.++..+. +-.|..+..... .+...++++.
T Consensus 75 ~~~~~~~i~~f~~~~g~~vLGIcNGfQiL~~~Gllp~~~~~~~~~~~~L~~N~s~~fe~rwv~~~v~~~-s~~~~~~~~~ 153 (259)
T PF13507_consen 75 NSPLMDAIREFLERPGGFVLGICNGFQILVELGLLPGGEIKDSEQSPALTPNASGRFESRWVNLVVNEN-SPSIFLRGLE 153 (259)
T ss_dssp SCCCHHHHHHHHHCTT-EEEEECHHHHHHCCCCCSTT------TT--EEE--TTSS-EEEEEEEEE--S-STTCCCTTTT
T ss_pred cHHHHHHHHHHHhcCCCeEEEEchHhHHHHHhCcCCCccccccCCCcEEcCCCCCCeEEEEEEEEEecC-CcceecCCCC
Confidence 2444555 345 89999 9999999875 555 333333111 122333322111 1233344542
Q ss_pred CceEEeecccce--ee-cC----CCCCCCeEEEEEcCC----------------CcEEEEEeCCCCcEEEEcCCCCCCCC
Q 037843 141 NPFTAGRYHGLV--IE-KD----SFRSDELEVTAWTED----------------GLIMAARHKKYKHLHGVQFHPESILT 197 (203)
Q Consensus 141 ~~~~~~~~H~~~--v~-~~----~l~~~~~~~~a~s~~----------------~~v~a~~~~~~~~i~gvQfHPE~~~~ 197 (203)
.+.+.-.|++. +. .+ .|...+..++-+.+. ..|+++...+.+ ++|...|||+...
T Consensus 154 -~~~lPiahgeG~~~~~~~~~l~~l~~~~qi~~~Y~~~~g~~a~~yP~NPNGS~~~IAGics~~Gr-vlglMpHPEr~~~ 231 (259)
T PF13507_consen 154 -GIVLPIAHGEGRFYARDEATLEELEENGQIAFRYVDEEGNPAQEYPRNPNGSVNNIAGICSPDGR-VLGLMPHPERAFE 231 (259)
T ss_dssp -CEEEEEEESS-EEE-SSHHHHHHHCCTTEEEEEECSTTSSB--STTTSSS--GGGEEEEE-TTSS-EEEESSBCCGTTC
T ss_pred -EEEEEEecCcceeecCCHHHHHHHHhcCeEEEEEecCCCCcccCCCCCCCCCccceeEEEcCCCC-EEEEcCChHHhCc
Confidence 34444445432 21 11 233345555544431 368999999997 9999999999987
Q ss_pred CCC
Q 037843 198 SEG 200 (203)
Q Consensus 198 ~~g 200 (203)
++.
T Consensus 232 ~~~ 234 (259)
T PF13507_consen 232 PWQ 234 (259)
T ss_dssp CCC
T ss_pred hhh
Confidence 764
No 87
>PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ]. The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A.
Probab=99.00 E-value=3.5e-09 Score=81.19 Aligned_cols=143 Identities=24% Similarity=0.314 Sum_probs=79.7
Q ss_pred HHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCC----CcchHHHHHHHh-CCC-Ccee--ehhHHH
Q 037843 30 QYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQ----ESGISFRTVLEL-GPT-MPLF--CMGLKC 101 (203)
Q Consensus 30 ~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~----~~~~~~~~i~~~-~~~-~Pil--ClG~Ql 101 (203)
+.++++ |++...++ +++++. ++||+||+||-+..- ....+.+.|+++ ..+ +|+| |-||-+
T Consensus 13 ~~l~~l------g~~~~~Vr----~~~dL~--~~dgLIiPGGESTti~~ll~~~gL~~~l~~~~~~g~~Pv~GTCAGlIl 80 (188)
T PF01174_consen 13 RMLERL------GAEVVEVR----TPEDLE--GLDGLIIPGGESTTIGKLLRRYGLFEPLREFIRSGSKPVWGTCAGLIL 80 (188)
T ss_dssp HHHHHT------TSEEEEE-----SGGGGT--T-SEEEE-SS-HHHHHHHHHHTTHHHHHHHHHHTT--EEEEETHHHHH
T ss_pred HHHHHc------CCCeEEeC----CHHHHc--cCCEEEECCCcHHHHHHHHHHcCCHHHHHHHHHcCCCceeehhHHHHH
Confidence 467777 88876664 356776 579999999864311 111234556653 344 9999 999999
Q ss_pred HHHHhCCe-----------eccccccccccceeEEEcccccccccccCCCCceEEeecccceeecCCCCCCCeEEEEEcC
Q 037843 102 IGEALEGR-----------LYVLLLVSCMGKALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWTE 170 (203)
Q Consensus 102 la~a~gg~-----------v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~ 170 (203)
|+....+. |.|+.++.........+ -+.++..++...+..--.|..- ..+++..+++..+
T Consensus 81 La~~v~~~~q~~Lg~ldi~V~RNafGrQ~~SFe~~l--------~i~~~~~~~~avFIRAP~I~~v-~~~~~v~vla~~~ 151 (188)
T PF01174_consen 81 LAKEVEGQGQPLLGLLDITVRRNAFGRQLDSFEADL--------DIPGLGEPFPAVFIRAPVIEEV-GSPEGVEVLAELD 151 (188)
T ss_dssp HEEEECSSCCTSS--EEEEEETTTTCSSSCEEEEEE--------EETTTESEEEEEESS--EEEEE---TTTEEEEEEET
T ss_pred hhhhhhhcccccccceeEEEEccccccchhcEEEEE--------EeecCCCcEEEEEcCCcEEEEe-ecccccccccccc
Confidence 99754332 22222222111111111 1223334677777777777651 0126889888876
Q ss_pred CCcEEEEEeCCCCcEEEEcCCCCCCCC
Q 037843 171 DGLIMAARHKKYKHLHGVQFHPESILT 197 (203)
Q Consensus 171 ~~~v~a~~~~~~~~i~gvQfHPE~~~~ 197 (203)
. .+-+++.. +++++-||||.+..
T Consensus 152 g-~iVav~qg---n~latsFHPELT~D 174 (188)
T PF01174_consen 152 G-KIVAVRQG---NILATSFHPELTDD 174 (188)
T ss_dssp T-EEEEEEET---TEEEESS-GGGSST
T ss_pred c-ceEEEEec---CEEEEEeCCcccCc
Confidence 5 45566654 49999999997753
No 88
>PF04204 HTS: Homoserine O-succinyltransferase ; InterPro: IPR005697 This family of enzymes, homoserine O-succinyltransferase, catalyses the first step in the biosynthesis of methionine: Succinyl-CoA + L-homoserine = CoA + O-succinyl-L-homoserine This enzyme is consequently essential for the survival of bacteria, plants and fungi. Since they are not found in humans, they make a promising new target for antimicrobial drug development. Homoserine O-succinyltransferase (HST) is a representative from this class and has recently had the key amino acids involved in substrate specificity and catalysis elucidated [].; GO: 0016746 transferase activity, transferring acyl groups, 0019281 L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine, 0005737 cytoplasm; PDB: 2H2W_A 2GHR_A 2VDJ_A.
Probab=98.93 E-value=5.4e-09 Score=86.02 Aligned_cols=139 Identities=19% Similarity=0.159 Sum_probs=79.4
Q ss_pred HHHHhccCCCEEEECCCCCCCCCc---ch---HHHHHHHh-CCCCcee--ehhHHH-HHHHhCCeeccccccccccceeE
Q 037843 55 VAELKRKKPRGVVISPGPGAPQES---GI---SFRTVLEL-GPTMPLF--CMGLKC-IGEALEGRLYVLLLVSCMGKALV 124 (203)
Q Consensus 55 ~~~l~~~~~dgiil~GG~~~~~~~---~~---~~~~i~~~-~~~~Pil--ClG~Ql-la~a~gg~v~~~~~~~~~g~~~i 124 (203)
.+++....+||+||||.|-.--+. +- +.+++.-. .+..+.| |+|.|. |....|-.-..++ ....|..+-
T Consensus 91 ~~~i~~~~~DglIITGAPvE~l~Fe~V~YW~El~~i~dwa~~~v~stl~iCWgAqAaLy~~yGI~K~~l~-~KlfGVf~~ 169 (298)
T PF04204_consen 91 FDEIKDRKFDGLIITGAPVEQLPFEEVDYWDELTEIFDWAKTHVTSTLFICWGAQAALYHFYGIPKYPLP-EKLFGVFEH 169 (298)
T ss_dssp HHHCTTS-EEEEEE---TTTTS-GGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHH----EEEE-EEEEEEEEE
T ss_pred HHHHhhCCCCEEEEeCCCcCCCCcccCCcHHHHHHHHHHHHHcCCcchhhhHHHHHHHHHHcCCCcccCC-Ccceeceee
Confidence 445555589999999998643222 21 22333322 3557888 999999 7777888877776 455677554
Q ss_pred EEcccccccccccCCCCceEEeecccceeecCCC-CCCCeEEEEEcCCCcEEEEEeCCCCcEEEEcCCCCCCCC
Q 037843 125 YYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSF-RSDELEVTAWTEDGLIMAARHKKYKHLHGVQFHPESILT 197 (203)
Q Consensus 125 ~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l-~~~~~~~~a~s~~~~v~a~~~~~~~~i~gvQfHPE~~~~ 197 (203)
.... ..++|++|+++.|.+-++..-.+..+.+ ..++++++|.|+..-+..+..++++ .+=+|.|||+...
T Consensus 170 ~~~~--~~~pLl~Gfdd~f~~PhSR~t~i~~~~i~~~~~L~vLa~s~~~G~~l~~~~d~r-~vfi~GH~EYd~~ 240 (298)
T PF04204_consen 170 RVLD--PDHPLLRGFDDTFFAPHSRYTEIDRDDIKKAPGLEVLAESEEAGVFLVASKDGR-QVFITGHPEYDAD 240 (298)
T ss_dssp EES---SS-GGGTT--SEEEEEEEEEEE--HHHHCT-TTEEEEEEETTTEEEEEEECCCT-EEEE-S-TT--TT
T ss_pred eccC--CCChhhcCCCccccCCcccccCCCHHHHhcCCCcEEEeccCCcceEEEEcCCCC-EEEEeCCCccChh
Confidence 4332 2389999999888776544334443333 3579999999987767777777776 7789999998753
No 89
>cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti
Probab=98.89 E-value=4.5e-09 Score=80.64 Aligned_cols=107 Identities=14% Similarity=0.107 Sum_probs=71.8
Q ss_pred HHhccCCCEEEECCCCCCCCCcch------HHHHHHHh-CCCCcee--ehhHHHHHHHhCCee-ccccccccccceeEEE
Q 037843 57 ELKRKKPRGVVISPGPGAPQESGI------SFRTVLEL-GPTMPLF--CMGLKCIGEALEGRL-YVLLLVSCMGKALVYY 126 (203)
Q Consensus 57 ~l~~~~~dgiil~GG~~~~~~~~~------~~~~i~~~-~~~~Pil--ClG~Qlla~a~gg~v-~~~~~~~~~g~~~i~~ 126 (203)
++...+|||+||||.|-.-.+... +.+++.-. .+..|+| |+|+|+...+++|.. ..++ ....|......
T Consensus 57 ~i~~~~yDGlIITGApve~~~fe~v~Yw~El~~i~dwa~~~v~stl~iCWgaqaal~~~yGi~k~~~~-~K~~Gvf~~~~ 135 (175)
T cd03131 57 DIRDAKFDGLIVTGAPVEHLPFEQVDYWEELTEILDWAKTHVTSTLFSCWAAMAALYYFYGIKKHQLP-EKIFGVFPHTI 135 (175)
T ss_pred HccccCCCEEEEeCCCcccCCccccchHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHcCcccccCC-CceEEEEEeee
Confidence 355558999999999875333221 22222222 4678999 999999999999986 5555 34456544333
Q ss_pred cccccccccccCCCCceEEeecccceeecCCC-CCCCeEEEE
Q 037843 127 NEKEEADGLLAGLSNPFTAGRYHGLVIEKDSF-RSDELEVTA 167 (203)
Q Consensus 127 ~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l-~~~~~~~~a 167 (203)
.. .++|++|+++.|.+-++|...|..+.+ ..+++++++
T Consensus 136 ~~---~hpL~~g~~d~F~~PhSR~~~v~~~~~~~~~~l~il~ 174 (175)
T cd03131 136 LE---PHPLLRGLDDGFDVPHSRYAEVDREDIEEAAGLTILA 174 (175)
T ss_pred cC---CCccccCCCCceeecCcccccCCHHHHhhCCCCEEcc
Confidence 22 389999999999999888888865333 235666654
No 90
>TIGR01001 metA homoserine O-succinyltransferase. The apparent equivalog from Bacillus subtilis is broken into two tandem reading frames.
Probab=98.72 E-value=9.9e-08 Score=78.19 Aligned_cols=175 Identities=15% Similarity=0.117 Sum_probs=105.8
Q ss_pred CCcEEEEeCCchH---HHHHHHHHHHhhhhhcCCce--EEEEeCCc---------------ccHHHHhccCCCEEEECCC
Q 037843 12 KNPIVVIDNYDSF---TYNLCQYMGELELELSQGYH--FEVYRNDE---------------LTVAELKRKKPRGVVISPG 71 (203)
Q Consensus 12 ~~~i~iid~~~~~---~~~l~~~l~~~~~~~~~g~~--~~v~~~~~---------------~~~~~l~~~~~dgiil~GG 71 (203)
..+|+||+.-..- -..+.|.|... .+. ++.+.... .+.++++..++||+||||-
T Consensus 35 pL~I~ILNLMP~K~~TE~Q~lRlL~nt------plqv~i~~~~~~sh~~k~t~~~hl~~fY~~f~~ik~~~fDGlIITGA 108 (300)
T TIGR01001 35 PLEILILNLMPKKIETENQFLRLLSNS------PLQVNITLLRTDSRKSKNTPIEHLNKFYTTFEAVKDRKFDGLIITGA 108 (300)
T ss_pred ceeEEEEecCCccHHHHHHHHHHhcCC------CCceEEEEEEeccccCCCCCHHHHHHHhhCHHHHhcCCCCEEEEcCC
Confidence 3679999765422 23355555443 444 44333221 1456666668999999999
Q ss_pred CCCCC---CcchH---HHHHHHh-CCCCcee--ehhHHH-HHHHhCCeeccccccccccceeEEEcccccccccccCCCC
Q 037843 72 PGAPQ---ESGIS---FRTVLEL-GPTMPLF--CMGLKC-IGEALEGRLYVLLLVSCMGKALVYYNEKEEADGLLAGLSN 141 (203)
Q Consensus 72 ~~~~~---~~~~~---~~~i~~~-~~~~Pil--ClG~Ql-la~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~~~ 141 (203)
|-.-- +.+-+ .+++.-. .+-...| |+|.|. |....|-.-..++ ....|..+-... +.++|++|+.+
T Consensus 109 PvE~l~FeeV~YW~El~~I~dwsk~~v~Stl~iCWaAqAaLy~~yGI~K~~l~-~KlfGVf~h~~~---~~~pL~rGfdd 184 (300)
T TIGR01001 109 PVELVPFEDVAYWEELTEIMEWSKHNVTSTMFICWAAQAGLKYFYGIPKYTLP-EKLSGVYKHDIA---PDSLLLRGFDD 184 (300)
T ss_pred CcCCCCcccCCcHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHcCCCccccC-CceEEeecCccC---CCCccccCCCC
Confidence 86422 22222 2333322 3556777 999999 5555676666665 345665332222 23789999998
Q ss_pred ceEEeecccceeecCCCC-CCCeEEEEEcCCCcEEEEEeCCCCcEEEEcCCCCCCCC
Q 037843 142 PFTAGRYHGLVIEKDSFR-SDELEVTAWTEDGLIMAARHKKYKHLHGVQFHPESILT 197 (203)
Q Consensus 142 ~~~~~~~H~~~v~~~~l~-~~~~~~~a~s~~~~v~a~~~~~~~~i~gvQfHPE~~~~ 197 (203)
.|.+-++..-.|..+.+. .++++++|.|+..-+..+..++++ -+=++.|||+...
T Consensus 185 ~f~~PhSR~t~i~~~~i~~~~~L~vla~s~e~G~~l~~s~d~r-~vfi~GH~EYd~~ 240 (300)
T TIGR01001 185 FFLAPHSRYADFDAEDIDKVTDLEILAESDEAGVYLAANKDER-NIFVTGHPEYDAY 240 (300)
T ss_pred ccccCCCCCCCCCHHHHhcCCCCeEEecCCCcceEEEEcCCCC-EEEEcCCCccChh
Confidence 877765332235433332 268999999976656666667766 4559999998753
No 91
>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.
Probab=98.62 E-value=4e-07 Score=88.42 Aligned_cols=183 Identities=13% Similarity=0.132 Sum_probs=107.0
Q ss_pred CCCCcEEEEeCCchH-HHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCC--Ccch------
Q 037843 10 NDKNPIVVIDNYDSF-TYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQ--ESGI------ 80 (203)
Q Consensus 10 ~~~~~i~iid~~~~~-~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~--~~~~------ 80 (203)
.+++||+|+-..+++ ......+|+.. |+.+..+...+.........+|++|+++||.+.-+ ..+.
T Consensus 1053 ~~~p~vail~~pG~N~~~e~~~Af~~a------Gf~~~~v~~~dl~~~~~~l~~~~~lv~~GGFSygD~lgsg~~~a~~i 1126 (1310)
T TIGR01735 1053 GVRPKVAILREQGVNGDREMAAAFDRA------GFEAWDVHMSDLLAGRVHLDEFRGLAACGGFSYGDVLGAGKGWAKSI 1126 (1310)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHh------CCCcEEEEEeccccCCcchhheeEEEEcCCCCCccchhHHHHHHHHH
Confidence 457899999766555 45577888887 88877766433222221112689999999975321 1222
Q ss_pred -----HHHHHHH-h-CCCCcee--ehhHHHHHHH---hCCe-----ecccccc-ccccceeEEEcccccccccccCCCC-
Q 037843 81 -----SFRTVLE-L-GPTMPLF--CMGLKCIGEA---LEGR-----LYVLLLV-SCMGKALVYYNEKEEADGLLAGLSN- 141 (203)
Q Consensus 81 -----~~~~i~~-~-~~~~Pil--ClG~Qlla~a---~gg~-----v~~~~~~-~~~g~~~i~~~~~~~~~~lf~~~~~- 141 (203)
+.+.+++ + .++.++| |-|+|+|... +++. ..++..+ .+--|..+++.. .++.+|+++..
T Consensus 1127 ~~~~~~~~~~~~f~~~~d~~~LGiCNGfQ~L~~~~gllp~~~~~p~l~~N~s~~fe~r~~~~~v~~--s~s~~~~~~~g~ 1204 (1310)
T TIGR01735 1127 LFNPRLRDQFQAFFKRPDTFSLGVCNGCQMLSNLLEWIPGTENWPHFVRNNSERFEARVASVRVGE--SPSIMLRGMAGS 1204 (1310)
T ss_pred HhChHHHHHHHHHHhCCCceEEEecHHHHHHHHHhCcCCCCCCCceeeecCCCCeEEeeeEEEECC--CCChhhhhcCCC
Confidence 1334444 3 5789999 9999999943 3332 2222211 111223444433 34677877653
Q ss_pred ceEEeecccce---eecC----CCCCCCeEEEEE-------------cCCC---cEEEEEeCCCCcEEEEcCCCCCCCCC
Q 037843 142 PFTAGRYHGLV---IEKD----SFRSDELEVTAW-------------TEDG---LIMAARHKKYKHLHGVQFHPESILTS 198 (203)
Q Consensus 142 ~~~~~~~H~~~---v~~~----~l~~~~~~~~a~-------------s~~~---~v~a~~~~~~~~i~gvQfHPE~~~~~ 198 (203)
.+.++-.|+.. +..+ .+...+...+-+ +.++ .|+++...+++ ++|...|||+...+
T Consensus 1205 ~l~~~vaHgEGr~~~~~~~~~~~l~~~~~ia~~Y~d~~g~~~~~yp~NPNGS~~~IaGi~s~dGr-vl~~MpHPEr~~~~ 1283 (1310)
T TIGR01735 1205 RLPVAVAHGEGYAAFSSPELQAQADASGLAALRYIDDDGNPTEAYPLNPNGSPGGIAGITSCDGR-VTIMMPHPERVFRA 1283 (1310)
T ss_pred EEEEEeEcCCCCeeeCCHHHHHHHHhCCeEEEEEeCCCCCccCCCCCCCCCChhcceEeECCCCC-EEEEcCCHHHhhhH
Confidence 46667777552 2211 122233333332 2222 48899999997 99999999998776
Q ss_pred CCC
Q 037843 199 EGK 201 (203)
Q Consensus 199 ~g~ 201 (203)
+..
T Consensus 1284 ~q~ 1286 (1310)
T TIGR01735 1284 WQN 1286 (1310)
T ss_pred hhC
Confidence 643
No 92
>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.
Probab=98.59 E-value=8.4e-08 Score=75.10 Aligned_cols=81 Identities=17% Similarity=0.155 Sum_probs=58.3
Q ss_pred EEEEeCC-chHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCC-----cchHHHHHHH-
Q 037843 15 IVVIDNY-DSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQE-----SGISFRTVLE- 87 (203)
Q Consensus 15 i~iid~~-~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~-----~~~~~~~i~~- 87 (203)
|+|+++. .++..++.++++.. |+++++++... + +. ++|+|||+||.....+ ...+.+.|++
T Consensus 1 ~~~~~y~~~gN~~~l~~~~~~~------G~~~~~~~~~~-~---~~--~~d~lilpGg~~~~~~~~~~~~~~~~~~i~~~ 68 (194)
T cd01750 1 IAVIRYPDISNFTDLDPLAREP------GVDVRYVEVPE-G---LG--DADLIILPGSKDTIQDLAWLRKRGLAEAIKNY 68 (194)
T ss_pred CEeecCCCccCHHHHHHHHhcC------CceEEEEeCCC-C---CC--CCCEEEECCCcchHHHHHHHHHcCHHHHHHHH
Confidence 5678885 67788888888888 99998887541 2 33 5799999888733211 1123455665
Q ss_pred hCCCCcee--ehhHHHHHHHhC
Q 037843 88 LGPTMPLF--CMGLKCIGEALE 107 (203)
Q Consensus 88 ~~~~~Pil--ClG~Qlla~a~g 107 (203)
..+++||| |.|+|+|++.+.
T Consensus 69 ~~~g~pvlgiC~G~qlL~~~~~ 90 (194)
T cd01750 69 ARAGGPVLGICGGYQMLGKYIV 90 (194)
T ss_pred HHCCCcEEEECHHHHHhhhhcc
Confidence 46789999 999999999873
No 93
>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.
Probab=98.55 E-value=2.2e-06 Score=82.60 Aligned_cols=179 Identities=15% Similarity=0.158 Sum_probs=104.4
Q ss_pred CCCcEEEEeCCchH-HHHHHHHHHHhhhhhcCCceEEEEeCCcc-------cHHHHh--ccCCCEEEECCCCCCCCCc--
Q 037843 11 DKNPIVVIDNYDSF-TYNLCQYMGELELELSQGYHFEVYRNDEL-------TVAELK--RKKPRGVVISPGPGAPQES-- 78 (203)
Q Consensus 11 ~~~~i~iid~~~~~-~~~l~~~l~~~~~~~~~g~~~~v~~~~~~-------~~~~l~--~~~~dgiil~GG~~~~~~~-- 78 (203)
.++||+|+-..+++ ..-..++|+.. |+.+..+...+. +.+++. ..++++|+++||.+.-+..
T Consensus 976 ~kpkvaIl~~pGtNce~d~a~Af~~a------G~~~~~v~~~dl~~~~i~~s~~~~~~~l~~~~~l~~pGGFSyGD~l~~ 1049 (1239)
T TIGR01857 976 EKPRVVIPVFPGTNSEYDSAKAFEKE------GAEVNLVIFRNLNEEALVESVETMVDEIDKSQILMLPGGFSAGDEPDG 1049 (1239)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHc------CCceEEEEEecCcccccccchhhhhcccccCcEEEEcCccCcccccch
Confidence 47899999776665 45577888887 888776654332 122221 1278999999998532221
Q ss_pred c-h----------HHHHHHH-hCCCCcee--ehhHHHHHHH--h-CCeec----------ccccc-ccccceeEEEcccc
Q 037843 79 G-I----------SFRTVLE-LGPTMPLF--CMGLKCIGEA--L-EGRLY----------VLLLV-SCMGKALVYYNEKE 130 (203)
Q Consensus 79 ~-~----------~~~~i~~-~~~~~Pil--ClG~Qlla~a--~-gg~v~----------~~~~~-~~~g~~~i~~~~~~ 130 (203)
+ . +.+.+.+ +.++.++| |-|+|+|... + ++++. ++..+ .+-.+..++.. .
T Consensus 1050 ~~~~~aa~~~n~~~~~~~~~f~~~d~~~LGICNGfQ~L~~lGLlP~~~~~~~~~~~p~l~~N~s~rf~~r~v~~~v~--~ 1127 (1239)
T TIGR01857 1050 SAKFIAAILRNPKVRVAIDSFLARDGLILGICNGFQALVKSGLLPYGNIEAANETSPTLTYNDINRHVSKIVRTRIA--S 1127 (1239)
T ss_pred hHHHHHHHhhChHHHHHHHHHHhCCCcEEEechHHHHHHHcCCCcCccccccccCCceeeecCCCCeEEeeeEEEEC--C
Confidence 1 1 2333444 36889999 9999999885 2 12222 11100 11112333332 2
Q ss_pred cccccccCCC--CceEEeecccce--e-ecC---CCCCCCeEEEEE-------------cCCC---cEEEEEeCCCCcEE
Q 037843 131 EADGLLAGLS--NPFTAGRYHGLV--I-EKD---SFRSDELEVTAW-------------TEDG---LIMAARHKKYKHLH 186 (203)
Q Consensus 131 ~~~~lf~~~~--~~~~~~~~H~~~--v-~~~---~l~~~~~~~~a~-------------s~~~---~v~a~~~~~~~~i~ 186 (203)
..++++.++. ..+.+...|+.. + ..+ .|...+..++-+ +.++ .|+++...+++ ++
T Consensus 1128 ~~s~~~~~~~~g~~~~ipvaHgEGrf~~~~~~l~~l~~~~qva~rYvd~~g~~t~~~p~NPNGS~~~IaGi~s~dGr-vl 1206 (1239)
T TIGR01857 1128 TNSPWLSGVSVGDIHAIPVSHGEGRFVASDEVLAELRENGQIATQYVDFNGKPSMDSKYNPNGSSLAIEGITSPDGR-IF 1206 (1239)
T ss_pred CCChhHhcCCCCCEEEEEeEcCCcceecCHHHHHHHHHCCcEEEEEeCCCCCcccCCCCCCCCChhhhhEeECCCCC-EE
Confidence 3477887764 346667777653 1 111 121223333222 2222 57899999987 99
Q ss_pred EEcCCCCCCCCC
Q 037843 187 GVQFHPESILTS 198 (203)
Q Consensus 187 gvQfHPE~~~~~ 198 (203)
|..-||||...+
T Consensus 1207 g~MpHpER~~~~ 1218 (1239)
T TIGR01857 1207 GKMGHSERYGDG 1218 (1239)
T ss_pred EECCCcccccCc
Confidence 999999998654
No 94
>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional
Probab=98.50 E-value=1.8e-06 Score=83.66 Aligned_cols=179 Identities=15% Similarity=0.105 Sum_probs=105.1
Q ss_pred CCCcEEEEeCCchH-HHHHHHHHHHhhhhhcCCceEEEEeCCcccH--HHHhccCCCEEEECCCCC--CCCCcch-----
Q 037843 11 DKNPIVVIDNYDSF-TYNLCQYMGELELELSQGYHFEVYRNDELTV--AELKRKKPRGVVISPGPG--APQESGI----- 80 (203)
Q Consensus 11 ~~~~i~iid~~~~~-~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~--~~l~~~~~dgiil~GG~~--~~~~~~~----- 80 (203)
.++||+|+-..+++ ..-...+|+.. |+.+..+...+... ..+. ++++|+++||.+ +....+.
T Consensus 1036 ~~pkVaVl~~pGtN~~~e~~~Af~~a------Gf~~~~V~~~dl~~~~~~L~--~~~glv~pGGFSyGD~l~sg~~wa~~ 1107 (1307)
T PLN03206 1036 SKPKVAIIREEGSNGDREMAAAFYAA------GFEPWDVTMSDLLNGRISLD--DFRGIVFVGGFSYADVLDSAKGWAGS 1107 (1307)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHc------CCceEEEEeeeccccccccc--ceeEEEEcCcCCCccccchHHHHHHH
Confidence 36899999766655 45577889887 88876665432211 1233 689999999984 3333331
Q ss_pred ------HHHHHHH-h-CCCCcee--ehhHHHHHHH--hC-Ce---------------ecccccc-ccccceeEEEccccc
Q 037843 81 ------SFRTVLE-L-GPTMPLF--CMGLKCIGEA--LE-GR---------------LYVLLLV-SCMGKALVYYNEKEE 131 (203)
Q Consensus 81 ------~~~~i~~-~-~~~~Pil--ClG~Qlla~a--~g-g~---------------v~~~~~~-~~~g~~~i~~~~~~~ 131 (203)
+.+.+++ + ..+.++| |-|+|+|... +. ++ ..++..+ .+--|..+++. ..
T Consensus 1108 i~~n~~~~~~~~~f~~~~d~~~LGICNGfQiL~~lgllPg~~~~~~~~~~~~e~~p~l~~N~s~rfesr~v~v~V~--~s 1185 (1307)
T PLN03206 1108 IRFNEPLLQQFQEFYNRPDTFSLGVCNGCQLMALLGWVPGPQVGGGLGAGGDPSQPRFVHNESGRFECRFTSVTIE--DS 1185 (1307)
T ss_pred HHhChHHHHHHHHHHhCCCceEEEEcHHHHHHHHcCCCCCCccccccccccccCCceeeecCCCCeEEeceEEEEC--CC
Confidence 2334444 3 4589999 9999999885 21 11 1111100 11122334442 23
Q ss_pred ccccccCCCC-ceEEeecccce--e-ecC----CCCCCCeEEEEE-------------cCCC---cEEEEEeCCCCcEEE
Q 037843 132 ADGLLAGLSN-PFTAGRYHGLV--I-EKD----SFRSDELEVTAW-------------TEDG---LIMAARHKKYKHLHG 187 (203)
Q Consensus 132 ~~~lf~~~~~-~~~~~~~H~~~--v-~~~----~l~~~~~~~~a~-------------s~~~---~v~a~~~~~~~~i~g 187 (203)
++.+|+++.. .+.++-.|+.. + ..+ .|...+...+-+ +.++ .|+++...+++ ++|
T Consensus 1186 ~si~l~~~~G~~l~i~vaHgEGr~~~~~~~~l~~l~~~gqva~rY~d~~g~~t~~yP~NPNGS~~~IAGi~s~dGR-vlg 1264 (1307)
T PLN03206 1186 PAIMLKGMEGSTLGVWAAHGEGRAYFPDESVLDEVLKSNLAPVRYCDDDGEPTEQYPFNPNGSPLGIAALCSPDGR-HLA 1264 (1307)
T ss_pred CChhhcccCCCEEEEEEEcCCCCeecCCHHHHHHHHhcCeEEEEEeCCCCCccCCCCCCCCCChhhceeeECCCCC-EEE
Confidence 4677877653 46666667642 1 211 122233333322 2222 58899999997 999
Q ss_pred EcCCCCCCCCCCC
Q 037843 188 VQFHPESILTSEG 200 (203)
Q Consensus 188 vQfHPE~~~~~~g 200 (203)
...|||+...++.
T Consensus 1265 mMpHPER~~~~~q 1277 (1307)
T PLN03206 1265 MMPHPERCFLMWQ 1277 (1307)
T ss_pred EcCCHHHhhhhhh
Confidence 9999999887764
No 95
>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional
Probab=98.48 E-value=3.1e-06 Score=82.47 Aligned_cols=179 Identities=13% Similarity=0.154 Sum_probs=105.7
Q ss_pred CCCcEEEEeCCchH-HHHHHHHHHHhhhhhcCCceEEEEeCCcccH--HHHhccCCCEEEECCCCCCCCC--cch-----
Q 037843 11 DKNPIVVIDNYDSF-TYNLCQYMGELELELSQGYHFEVYRNDELTV--AELKRKKPRGVVISPGPGAPQE--SGI----- 80 (203)
Q Consensus 11 ~~~~i~iid~~~~~-~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~--~~l~~~~~dgiil~GG~~~~~~--~~~----- 80 (203)
.++||+|+-..+++ ..-...+|+.. |+.+..+...+... ..+. ++++|+++||.+.-+. .+.
T Consensus 1034 ~~pkv~il~~pG~N~~~e~~~Af~~a------G~~~~~v~~~dl~~~~~~l~--~~~~l~~~GGFS~gD~lgsg~~~a~~ 1105 (1290)
T PRK05297 1034 ARPKVAILREQGVNSHVEMAAAFDRA------GFDAIDVHMSDLLAGRVTLE--DFKGLVACGGFSYGDVLGAGEGWAKS 1105 (1290)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHc------CCCeEEEEeecCcCCCCChh--hCcEEEECCccCCcccchHHHHHHHH
Confidence 46899999766655 45677889887 88877665432222 1243 6899999999643221 221
Q ss_pred ------HHHHHHH-h-CCCCcee--ehhHHHHHHHhCC---------eecccccc-ccccceeEEEcccccccccccCCC
Q 037843 81 ------SFRTVLE-L-GPTMPLF--CMGLKCIGEALEG---------RLYVLLLV-SCMGKALVYYNEKEEADGLLAGLS 140 (203)
Q Consensus 81 ------~~~~i~~-~-~~~~Pil--ClG~Qlla~a~gg---------~v~~~~~~-~~~g~~~i~~~~~~~~~~lf~~~~ 140 (203)
+.+.+++ + .++.++| |-|+|+|... |. ++.++..+ .+--|..+++.. .++.+|+++.
T Consensus 1106 ~~~n~~~~~~~~~f~~~~d~~~LGiCNGfQ~L~~l-g~l~p~~~~~p~l~~N~s~rfesr~~~~~v~~--~~s~~~~~~~ 1182 (1290)
T PRK05297 1106 ILFNPRLRDQFEAFFARPDTFALGVCNGCQMMSNL-KEIIPGAEHWPRFVRNRSEQFEARFSLVEVQE--SPSIFLQGMA 1182 (1290)
T ss_pred hhccHHHHHHHHHHHhCCCceEEEEcHHHHHHHHh-CCccCCCCCCCeEeecCCCCeEEeeeEEEECC--CCChhHhhcC
Confidence 2344455 3 5789999 9999999986 21 11111101 111223444432 3467887765
Q ss_pred -CceEEeecccce--e-ecC---CCCCCCeEEEEE-------------cCCC---cEEEEEeCCCCcEEEEcCCCCCCCC
Q 037843 141 -NPFTAGRYHGLV--I-EKD---SFRSDELEVTAW-------------TEDG---LIMAARHKKYKHLHGVQFHPESILT 197 (203)
Q Consensus 141 -~~~~~~~~H~~~--v-~~~---~l~~~~~~~~a~-------------s~~~---~v~a~~~~~~~~i~gvQfHPE~~~~ 197 (203)
..+.++-.|++. + ..+ .|...+...+-+ +.++ .|+++...+++ ++|...|||+...
T Consensus 1183 g~~l~~~vaHgeGr~~~~~~~~~~l~~~~~ia~~Y~d~~g~~~~~yp~NPNGS~~~IaGi~s~dGr-vlglMpHPEr~~~ 1261 (1290)
T PRK05297 1183 GSRLPIAVAHGEGRAEFPDAHLAALEAKGLVALRYVDNHGQVTETYPANPNGSPNGITGLTTADGR-VTIMMPHPERVFR 1261 (1290)
T ss_pred CCEEEEEEEcCcccEEcCHHHHHHHHHCCcEEEEEECCCCCcccCCCCCCCCChhcceEeECCCCC-EEEEcCChHHhcc
Confidence 346666667642 2 111 122223333222 2222 58899999997 9999999999987
Q ss_pred CCCC
Q 037843 198 SEGK 201 (203)
Q Consensus 198 ~~g~ 201 (203)
+|.-
T Consensus 1262 ~~q~ 1265 (1290)
T PRK05297 1262 TVQN 1265 (1290)
T ss_pred hhhc
Confidence 7653
No 96
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=98.38 E-value=5.5e-06 Score=65.05 Aligned_cols=67 Identities=18% Similarity=0.283 Sum_probs=43.4
Q ss_pred HHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCC-----CcchHHHHHHH-hCCCCcee--ehhHHH
Q 037843 30 QYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQ-----ESGISFRTVLE-LGPTMPLF--CMGLKC 101 (203)
Q Consensus 30 ~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~-----~~~~~~~~i~~-~~~~~Pil--ClG~Ql 101 (203)
++|++. |+++.++... ..+++. ++|+|||+||..... ....+.+.|++ ..+++||+ |.|+|+
T Consensus 18 ~~l~~~------G~~v~~~s~~--~~~~l~--~~D~lilPGG~~~~~~~~L~~~~~~~~~i~~~~~~g~pilgICgG~ql 87 (198)
T cd03130 18 ELLEAA------GAELVPFSPL--KDEELP--DADGLYLGGGYPELFAEELSANQSMRESIRAFAESGGPIYAECGGLMY 87 (198)
T ss_pred HHHHHC------CCEEEEECCC--CCCCCC--CCCEEEECCCchHHHHHHHHhhHHHHHHHHHHHHcCCCEEEEcccHHH
Confidence 456666 9988876531 112333 489999988743211 11123455666 46789999 999999
Q ss_pred HHHHh
Q 037843 102 IGEAL 106 (203)
Q Consensus 102 la~a~ 106 (203)
|++.+
T Consensus 88 L~~~~ 92 (198)
T cd03130 88 LGESL 92 (198)
T ss_pred HHHHh
Confidence 99875
No 97
>PHA03366 FGAM-synthase; Provisional
Probab=98.02 E-value=0.0001 Score=72.08 Aligned_cols=87 Identities=16% Similarity=0.124 Sum_probs=58.4
Q ss_pred CCCcEEEEeCCchH-HHHHHHHHHHhhhhhcCCceEEEEeCCcccHHH-HhccCCCEEEECCCCCCCCCc--ch------
Q 037843 11 DKNPIVVIDNYDSF-TYNLCQYMGELELELSQGYHFEVYRNDELTVAE-LKRKKPRGVVISPGPGAPQES--GI------ 80 (203)
Q Consensus 11 ~~~~i~iid~~~~~-~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~-l~~~~~dgiil~GG~~~~~~~--~~------ 80 (203)
.++||+|+-..+.+ ......+|+.. |..+..+...+..... +. +|+||+++||.+.-+.. +.
T Consensus 1027 ~~prVaIl~~pG~N~~~e~~~Af~~a------Gf~~~~v~~~dL~~~~~l~--~f~glv~~GGFS~gD~l~~~~~~a~~i 1098 (1304)
T PHA03366 1027 KRHRVAVLLLPGCPGPHALLAAFTNA------GFDPYPVSIEELKDGTFLD--EFSGLVIGGSSGAEDSYTGARAAVAAL 1098 (1304)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHc------CCceEEEEeecCCCCCccc--cceEEEEcCCCCCcccccHHHHHHHHh
Confidence 47899999766555 45577888888 8888777643332222 33 68999999998643222 11
Q ss_pred -----HHHHHHHh--CCCCcee--eh-hHHHHHHH
Q 037843 81 -----SFRTVLEL--GPTMPLF--CM-GLKCIGEA 105 (203)
Q Consensus 81 -----~~~~i~~~--~~~~Pil--Cl-G~Qlla~a 105 (203)
+.+.++++ .++.++| |- |+|+|+..
T Consensus 1099 l~n~~~~~~~~~f~~r~dt~~LGiCN~G~Q~L~~l 1133 (1304)
T PHA03366 1099 LSNPAVRDALLRFLNRPDTFSLGCGELGCQILFAL 1133 (1304)
T ss_pred hhchHHHHHHHHHHhCCCCeEEEeCcHHHHHHHHc
Confidence 23445553 4689999 96 99999873
No 98
>KOG3210 consensus Imidazoleglycerol-phosphate synthase subunit H-like [Coenzyme transport and metabolism]
Probab=97.95 E-value=0.00032 Score=52.96 Aligned_cols=91 Identities=15% Similarity=0.231 Sum_probs=53.6
Q ss_pred CCCCcEEEEeCCchHHHH---HHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCC----CcchHH
Q 037843 10 NDKNPIVVIDNYDSFTYN---LCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQ----ESGISF 82 (203)
Q Consensus 10 ~~~~~i~iid~~~~~~~~---l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~----~~~~~~ 82 (203)
+++.-|.|+...+.|... +.+.+.+- .-++.+.+.+. .+++++. ++|++||+||....- ....+.
T Consensus 9 Ktn~VIGVLALQGAFiEH~N~~~~c~~en----~y~Ik~~~~tV--KT~~D~a--q~DaLIIPGGEST~mslia~~tgL~ 80 (226)
T KOG3210|consen 9 KTNVVIGVLALQGAFIEHVNHVEKCIVEN----RYEIKLSVMTV--KTKNDLA--QCDALIIPGGESTAMSLIAERTGLY 80 (226)
T ss_pred CcceEEeeeehhhHHHHHHHHHHHhhccC----cceEEEEEEee--cCHHHHh--hCCEEEecCCchhHHHHHHhhhhhH
Confidence 344556777776667543 33333221 00344444443 4677777 689999999975421 112244
Q ss_pred HHHHHh--CCCCcee--ehhHHHHHHHhCC
Q 037843 83 RTVLEL--GPTMPLF--CMGLKCIGEALEG 108 (203)
Q Consensus 83 ~~i~~~--~~~~Pil--ClG~Qlla~a~gg 108 (203)
+.+.++ ...+|++ |-||-+|..-+.+
T Consensus 81 d~L~~fVhn~~k~~WGTCAGmI~LS~ql~n 110 (226)
T KOG3210|consen 81 DDLYAFVHNPSKVTWGTCAGMIYLSQQLSN 110 (226)
T ss_pred HHHHHHhcCCCccceeechhhhhhhhhhcC
Confidence 555554 3459999 9999999876543
No 99
>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase. This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.
Probab=97.93 E-value=0.00018 Score=69.98 Aligned_cols=87 Identities=16% Similarity=0.168 Sum_probs=56.9
Q ss_pred CCCcEEEEeCCchH-HHHHHHHHHHhhhhhcCCceEEEEeCCcccH-HHHhccCCCEEEECCCCCCCCC--cch------
Q 037843 11 DKNPIVVIDNYDSF-TYNLCQYMGELELELSQGYHFEVYRNDELTV-AELKRKKPRGVVISPGPGAPQE--SGI------ 80 (203)
Q Consensus 11 ~~~~i~iid~~~~~-~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~-~~l~~~~~dgiil~GG~~~~~~--~~~------ 80 (203)
.++||+|+-..+.+ ......+|+.. |+.+..+...+... ..+. +++||+++||.+.-+. .+.
T Consensus 928 ~~p~VaIl~~pG~N~~~e~~~Af~~a------Gf~~~~v~~~dl~~~~~l~--~f~glv~~Ggfsy~D~lgsg~~~a~~i 999 (1202)
T TIGR01739 928 PRHQVAVLLLPGQSVPHGLLAALTNA------GFDPRIVSITELKKTDFLD--TFSGLIIGGASGTLDSEVGARALAAAL 999 (1202)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHc------CCceEEEEeccCCCCCchh--heEEEEEcCcCCCCccchHHHHHHHHh
Confidence 46889999665555 45677889888 98877776433221 1233 6899999888753221 221
Q ss_pred -----HHHHHHH-h-CCCCcee--eh-hHHHHHHH
Q 037843 81 -----SFRTVLE-L-GPTMPLF--CM-GLKCIGEA 105 (203)
Q Consensus 81 -----~~~~i~~-~-~~~~Pil--Cl-G~Qlla~a 105 (203)
+.+.+++ + .++.++| |- |+|+|+..
T Consensus 1000 l~n~~~~~~~~~f~~r~dtf~LGiCN~G~Q~L~~l 1034 (1202)
T TIGR01739 1000 LRNQAFLRDLLTFLNRPDTFSLGFGELGCQLLLAL 1034 (1202)
T ss_pred hcchHHHHHHHHHHhCCCceEEEeCcHHHHHHHHc
Confidence 2334444 3 4589999 96 99999984
No 100
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=97.92 E-value=3e-05 Score=68.48 Aligned_cols=76 Identities=16% Similarity=0.277 Sum_probs=48.2
Q ss_pred cEEEEeCCchHHHHHHHHHHHhhhhhcCCc-eEEEEeCCcccHHHHhccCCCEEEECCCCCC-CCCc-chHHHHHHHhCC
Q 037843 14 PIVVIDNYDSFTYNLCQYMGELELELSQGY-HFEVYRNDELTVAELKRKKPRGVVISPGPGA-PQES-GISFRTVLELGP 90 (203)
Q Consensus 14 ~i~iid~~~~~~~~l~~~l~~~~~~~~~g~-~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~-~~~~-~~~~~~i~~~~~ 90 (203)
+|.|+.-. ++.++++.+ |. .+.++.. .+++++. ++|+|||+||.-. ..+. ..+.+.++++
T Consensus 2 ~iGvlal~-----sv~~al~~l------g~~~~~vv~~--~~~~~l~--~~D~lILPGG~~~~~~~l~~~l~~~i~~~-- 64 (476)
T PRK06278 2 EIGLLDIK-----GSLPCFENF------GNLPTKIIDE--NNIKEIK--DLDGLIIPGGSLVESGSLTDELKKEILNF-- 64 (476)
T ss_pred EEEEEehh-----hHHHHHHHh------cCCCcEEEEe--CChHHhc--cCCEEEECCCchhhcchHHHHHHHHHHHc--
Confidence 57888754 445667777 54 5555443 3466776 6799999887411 1111 1233444444
Q ss_pred CCcee--ehhHHHHHHHh
Q 037843 91 TMPLF--CMGLKCIGEAL 106 (203)
Q Consensus 91 ~~Pil--ClG~Qlla~a~ 106 (203)
++||| |.|||||++..
T Consensus 65 g~pvlGICgG~QmLg~~~ 82 (476)
T PRK06278 65 DGYIIGICSGFQILSEKI 82 (476)
T ss_pred CCeEEEEcHHHHhccccc
Confidence 79999 99999999865
No 101
>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende
Probab=97.76 E-value=0.00011 Score=50.20 Aligned_cols=71 Identities=20% Similarity=0.401 Sum_probs=48.3
Q ss_pred HHHHHHHHHhhhhhcCCceEEEEeCCcccHH-HHhccCCCEEEECCCCCCCCCc---chHHHHHHH-hCCCCcee--ehh
Q 037843 26 YNLCQYMGELELELSQGYHFEVYRNDELTVA-ELKRKKPRGVVISPGPGAPQES---GISFRTVLE-LGPTMPLF--CMG 98 (203)
Q Consensus 26 ~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~-~l~~~~~dgiil~GG~~~~~~~---~~~~~~i~~-~~~~~Pil--ClG 98 (203)
..+.+.++.. ++.+.+++....... .....++|++|++||....... ....+.+++ ..+++|++ |.|
T Consensus 15 ~~~~~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~d~lii~g~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~c~g 88 (115)
T cd01653 15 ASPLDALREA------GAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDDLARDEALLALLREAAAAGKPILGICLG 88 (115)
T ss_pred HHHHHHHHHC------CCeEEEEcCCCCceeccCChhccCEEEECCCCCchhhhccCHHHHHHHHHHHHcCCEEEEECch
Confidence 4566777777 888888875422110 0112268999999998765543 344566666 46789999 999
Q ss_pred HHHH
Q 037843 99 LKCI 102 (203)
Q Consensus 99 ~Qll 102 (203)
+|++
T Consensus 89 ~~~l 92 (115)
T cd01653 89 AQLL 92 (115)
T ss_pred hHhH
Confidence 9999
No 102
>PRK00784 cobyric acid synthase; Provisional
Probab=97.68 E-value=5.3e-05 Score=67.39 Aligned_cols=82 Identities=15% Similarity=0.087 Sum_probs=53.2
Q ss_pred CCcEEEEeCC-chHHHHHHHHHHH-hhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-----hHHHH
Q 037843 12 KNPIVVIDNY-DSFTYNLCQYMGE-LELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-----ISFRT 84 (203)
Q Consensus 12 ~~~i~iid~~-~~~~~~l~~~l~~-~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-----~~~~~ 84 (203)
+.+|+|+.+. ..+..++. .|+. . |+++.++.+ .+++. ++|+|+|+||........ .+.+.
T Consensus 251 ~~~i~v~~~~~a~~f~nl~-~l~~~~------g~~v~~~s~----~~~l~--~~d~lilpGg~~~~~~~~~~~~~~l~~~ 317 (488)
T PRK00784 251 ALRIAVIRLPRISNFTDFD-PLRAEP------GVDVRYVRP----GEPLP--DADLVILPGSKNTIADLAWLRESGWDEA 317 (488)
T ss_pred ceEEEEEeCCCcCCccChH-HHhhcC------CCeEEEECC----ccccc--cCCEEEECCccchHHHHHHHHHcCHHHH
Confidence 3589999733 22224444 4444 6 888877654 23454 579999988874322211 13455
Q ss_pred HHH-hCCCCcee--ehhHHHHHHHh
Q 037843 85 VLE-LGPTMPLF--CMGLKCIGEAL 106 (203)
Q Consensus 85 i~~-~~~~~Pil--ClG~Qlla~a~ 106 (203)
|++ ...++||| |.|+|+|+..+
T Consensus 318 i~~~~~~g~pilg~C~G~~~L~~~~ 342 (488)
T PRK00784 318 IRAHARRGGPVLGICGGYQMLGRRI 342 (488)
T ss_pred HHHHHHcCCeEEEECHHHHHHhhhc
Confidence 666 46789999 99999999987
No 103
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=97.67 E-value=0.00041 Score=55.27 Aligned_cols=50 Identities=16% Similarity=0.220 Sum_probs=36.7
Q ss_pred HHhccCCCEEEECCCCCCCC---C----------cchHHHHHHHh-CCCCcee--ehhHHHHHHHh
Q 037843 57 ELKRKKPRGVVISPGPGAPQ---E----------SGISFRTVLEL-GPTMPLF--CMGLKCIGEAL 106 (203)
Q Consensus 57 ~l~~~~~dgiil~GG~~~~~---~----------~~~~~~~i~~~-~~~~Pil--ClG~Qlla~a~ 106 (203)
++...+||+|+|+||.+... + ...+.++++++ ++++||- |-|-++|+.++
T Consensus 80 ~v~~~dyDalviPGG~g~~~~l~d~~~~~~~lr~~~~v~~lv~~f~~~gK~vaAIChgp~iL~~~~ 145 (217)
T PRK11780 80 EADAEDFDALIVPGGFGAAKNLSNFAVKGAECTVNPDVKALVRAFHQAGKPIGFICIAPAMLPKIL 145 (217)
T ss_pred HCChhhCCEEEECCCCchhhhhhhhcccchhcccCHHHHHHHHHHHHCCCEEEEECHHHHHHHHHh
Confidence 33334799999999976431 1 22356777774 7889998 99999999887
No 104
>COG1897 MetA Homoserine trans-succinylase [Amino acid transport and metabolism]
Probab=97.63 E-value=0.00032 Score=56.30 Aligned_cols=140 Identities=19% Similarity=0.130 Sum_probs=81.2
Q ss_pred cHHHHhccCCCEEEECCCCCCCCCcc---hHH--HHHHHh-C-CCCcee--ehhHHHHHHHh-CCeecccccccccccee
Q 037843 54 TVAELKRKKPRGVVISPGPGAPQESG---ISF--RTVLEL-G-PTMPLF--CMGLKCIGEAL-EGRLYVLLLVSCMGKAL 123 (203)
Q Consensus 54 ~~~~l~~~~~dgiil~GG~~~~~~~~---~~~--~~i~~~-~-~~~Pil--ClG~Qlla~a~-gg~v~~~~~~~~~g~~~ 123 (203)
+.+++++.+|||+||+|.|--.-+.. .+. ..|.+. . +---.| |+|.|.--.++ |-.-..++ ....|.+.
T Consensus 91 tfeeVk~~~FDG~IiTGAPve~l~feeV~YW~el~~I~eWskt~V~STl~ICWgaqAaly~~yGv~K~~l~-~Kl~GVy~ 169 (307)
T COG1897 91 TFEEVKDQKFDGLIITGAPVELLPFEEVAYWEELKQIFEWSKTHVTSTLHICWGAQAALYYFYGVPKYTLP-EKLSGVYK 169 (307)
T ss_pred cHHHHhhcccCceEEeCCcccccCchhhhhHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHcCCCccccc-hhhhceee
Confidence 45677777899999999986432222 222 222222 2 223445 99999876654 54444444 23345422
Q ss_pred EEEcccccccccccCCCCceEEeecccceeecCCC-CCCCeEEEEEcCCCcEEEEEeCCCCcEEEEcCCCCCCCC
Q 037843 124 VYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSF-RSDELEVTAWTEDGLIMAARHKKYKHLHGVQFHPESILT 197 (203)
Q Consensus 124 i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l-~~~~~~~~a~s~~~~v~a~~~~~~~~i~gvQfHPE~~~~ 197 (203)
-.. ....+.+++|+.+.|.+-++..-.+..+.+ .-+++++++.|+..-+..+..++.+ -+=+-.|||+...
T Consensus 170 h~~--l~p~~~l~rGfdd~f~~PhSR~t~~~~e~i~~~~~LeIL~es~e~G~~l~a~k~~r-~ifv~gH~EYD~~ 241 (307)
T COG1897 170 HDI--LSPHSLLTRGFDDSFLAPHSRYTDVPKEDILAVPDLEILAESKEAGVYLLASKDGR-NIFVTGHPEYDAT 241 (307)
T ss_pred ccc--cCccchhhccCCccccCcccccccCCHHHHhhCCCceeeecccccceEEEecCCCC-eEEEeCCcchhhh
Confidence 221 122367899998877665433223332221 1257999999975555555666666 4556689998764
No 105
>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []. Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process
Probab=97.61 E-value=0.00039 Score=52.60 Aligned_cols=46 Identities=17% Similarity=0.287 Sum_probs=33.5
Q ss_pred CCCEEEECCCCCCCCCcc-----hHHHHHHH-hCCCCcee--ehhHHHHHHHhC
Q 037843 62 KPRGVVISPGPGAPQESG-----ISFRTVLE-LGPTMPLF--CMGLKCIGEALE 107 (203)
Q Consensus 62 ~~dgiil~GG~~~~~~~~-----~~~~~i~~-~~~~~Pil--ClG~Qlla~a~g 107 (203)
++|+|+|+||.-...+.. .+.+.|++ ..++.||+ |-|+|+|++.+-
T Consensus 7 ~~D~i~lpGg~pe~~~~~l~~~~~~~~~I~~~~~~G~pi~aeCGG~~~Lg~~i~ 60 (158)
T PF07685_consen 7 DADGIYLPGGYPELFALELSRNRGLKEAIREAAEAGGPIYAECGGYQYLGESII 60 (158)
T ss_pred CCCEEEECCCcHHHHHHHHHHHhCHHHHHHHHHHcCCcEEEEchHHHHHHHHHh
Confidence 689999988864333221 23556666 46789999 999999999774
No 106
>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin
Probab=97.49 E-value=0.00023 Score=46.38 Aligned_cols=71 Identities=20% Similarity=0.396 Sum_probs=47.2
Q ss_pred HHHHHHHHHhhhhhcCCceEEEEeCCcccHH-HHhccCCCEEEECCCCCCCCCc---chHHHHHHH-hCCCCcee--ehh
Q 037843 26 YNLCQYMGELELELSQGYHFEVYRNDELTVA-ELKRKKPRGVVISPGPGAPQES---GISFRTVLE-LGPTMPLF--CMG 98 (203)
Q Consensus 26 ~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~-~l~~~~~dgiil~GG~~~~~~~---~~~~~~i~~-~~~~~Pil--ClG 98 (203)
..+.+.++.. +..+.++........ .....++|++|++||...+... ....+.+.+ ..++.|++ |.|
T Consensus 15 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~lii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g 88 (92)
T cd03128 15 ASPLDALREA------GAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDDLAWDEALLALLREAAAAGKPVLGICLG 88 (92)
T ss_pred ecHHHHHHhC------CCEEEEEeCCCCcccccCCcccCCEEEECCCCcchhhhccCHHHHHHHHHHHHcCCEEEEEecc
Confidence 4566777777 888888765422211 1122378999999998876543 334555555 46679999 999
Q ss_pred HHHH
Q 037843 99 LKCI 102 (203)
Q Consensus 99 ~Qll 102 (203)
+|++
T Consensus 89 ~~~~ 92 (92)
T cd03128 89 AQLL 92 (92)
T ss_pred cccC
Confidence 9874
No 107
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=97.49 E-value=0.0011 Score=58.48 Aligned_cols=83 Identities=18% Similarity=0.233 Sum_probs=52.0
Q ss_pred CcEEEEeCCc-hH--HHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCc-----chHHHH
Q 037843 13 NPIVVIDNYD-SF--TYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQES-----GISFRT 84 (203)
Q Consensus 13 ~~i~iid~~~-~~--~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~-----~~~~~~ 84 (203)
.+|+|+-... .| ..++ +.|++. |+++..+.+. ..+++. ++|+|+|+||....... ..+.+.
T Consensus 245 ~~Iava~d~afnFy~~~~~-~~L~~~------g~~~~~~~~~--~d~~l~--~~d~l~ipGG~~~~~~~~l~~~~~~~~~ 313 (449)
T TIGR00379 245 VRIAVAQDQAFNFYYQDNL-DALTHN------AAELVPFSPL--EDTELP--DVDAVYIGGGFPELFAEELSQNQALRDS 313 (449)
T ss_pred cEEEEEechhhceeHHHHH-HHHHHC------CCEEEEECCc--cCCCCC--CCCEEEeCCcHHHHHHHHHHhhhHHHHH
Confidence 5788884332 11 2333 356666 8988776541 112343 67999999987422211 113455
Q ss_pred HHH-hCCCCcee--ehhHHHHHHHh
Q 037843 85 VLE-LGPTMPLF--CMGLKCIGEAL 106 (203)
Q Consensus 85 i~~-~~~~~Pil--ClG~Qlla~a~ 106 (203)
|++ ..++.||| |-|+|+|++.+
T Consensus 314 i~~~~~~G~pv~g~CgG~~~L~~~i 338 (449)
T TIGR00379 314 IKTFIHQGLPIYGECGGLMYLSQSL 338 (449)
T ss_pred HHHHHHcCCCEEEEcHHHHHHHhhh
Confidence 665 46789999 99999999976
No 108
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=97.36 E-value=0.00048 Score=60.70 Aligned_cols=83 Identities=19% Similarity=0.283 Sum_probs=53.2
Q ss_pred CcEEEEeCCc-hH--HHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCC-----CcchHHHH
Q 037843 13 NPIVVIDNYD-SF--TYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQ-----ESGISFRT 84 (203)
Q Consensus 13 ~~i~iid~~~-~~--~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~-----~~~~~~~~ 84 (203)
.+|+|+-... .| ..++ +.|++. |+++..+++. ..+++. ++|+|||+||..... ....+.+.
T Consensus 246 ~~iava~d~af~f~y~e~~-~~L~~~------g~~~~~~~~~--~~~~l~--~~D~lilpGG~~~~~~~~l~~~~~~~~~ 314 (451)
T PRK01077 246 VRIAVARDAAFNFYYPENL-ELLRAA------GAELVFFSPL--ADEALP--DCDGLYLGGGYPELFAAELAANTSMRAS 314 (451)
T ss_pred ceEEEEecCcccccHHHHH-HHHHHC------CCEEEEeCCc--CCCCCC--CCCEEEeCCCchhhHHHHHhhCchhHHH
Confidence 5888884332 22 1233 456666 8888776541 122343 689999999964321 11224566
Q ss_pred HHH-hCCCCcee--ehhHHHHHHHh
Q 037843 85 VLE-LGPTMPLF--CMGLKCIGEAL 106 (203)
Q Consensus 85 i~~-~~~~~Pil--ClG~Qlla~a~ 106 (203)
|++ ..+++||+ |-|+|+|+..+
T Consensus 315 i~~~~~~g~~i~aiCgG~~~L~~~i 339 (451)
T PRK01077 315 IRAAAAAGKPIYAECGGLMYLGESL 339 (451)
T ss_pred HHHHHHcCCCEEEEcHHHHHHHhhh
Confidence 666 46789999 99999999987
No 109
>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=97.28 E-value=0.0014 Score=50.36 Aligned_cols=44 Identities=18% Similarity=0.238 Sum_probs=33.6
Q ss_pred CCCEEEECCCCCCCC--CcchHHHHHHH-hCCCCcee--ehhHHHHHHH
Q 037843 62 KPRGVVISPGPGAPQ--ESGISFRTVLE-LGPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 62 ~~dgiil~GG~~~~~--~~~~~~~~i~~-~~~~~Pil--ClG~Qlla~a 105 (203)
+||+|+++||++... .......++++ +.+++||. |-|.++|+.+
T Consensus 76 ~~D~liv~GG~~~~~~~~~~~~~~~l~~~~~~~k~i~~ic~G~~~La~a 124 (180)
T cd03169 76 DYDALVIPGGRAPEYLRLDEKVLAIVRHFAEANKPVAAICHGPQILAAA 124 (180)
T ss_pred HCCEEEEcCCCChhhhccCHHHHHHHHHHHHcCCEEEEECcHHHHHHHc
Confidence 589999999975322 22345677777 47889999 9999999986
No 110
>TIGR01382 PfpI intracellular protease, PfpI family. The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.
Probab=96.96 E-value=0.0039 Score=47.06 Aligned_cols=44 Identities=23% Similarity=0.282 Sum_probs=33.3
Q ss_pred CCCEEEECCCCCCCC--CcchHHHHHHHh-CCCCcee--ehhHHHHHHH
Q 037843 62 KPRGVVISPGPGAPQ--ESGISFRTVLEL-GPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 62 ~~dgiil~GG~~~~~--~~~~~~~~i~~~-~~~~Pil--ClG~Qlla~a 105 (203)
++|+|+++||.+... ....+.++++++ .+++||. |-|.++|+.+
T Consensus 60 ~~D~vvv~Gg~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~G~~~La~a 108 (166)
T TIGR01382 60 EYDALVIPGGRAPEYLRLNNKAVRLVREFVEKGKPVAAICHGPQLLISA 108 (166)
T ss_pred HCcEEEECCCCCHHHhccCHHHHHHHHHHHHcCCEEEEEChHHHHHHhc
Confidence 589999999976321 223467777774 6789999 9999999975
No 111
>COG3442 Predicted glutamine amidotransferase [General function prediction only]
Probab=96.96 E-value=0.0045 Score=48.81 Aligned_cols=146 Identities=13% Similarity=0.106 Sum_probs=75.3
Q ss_pred HHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCC------CcchHHHHHHH-hCCCCcee--ehh
Q 037843 28 LCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQ------ESGISFRTVLE-LGPTMPLF--CMG 98 (203)
Q Consensus 28 l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~------~~~~~~~~i~~-~~~~~Pil--ClG 98 (203)
+.+..+.+ |+.+++++....+ .+....+|.+++.||. +.. +.....+-+++ .++++|+| |-|
T Consensus 26 Lr~ra~~r------gi~v~i~~vsl~d--~~~~~~~Dl~~~GGgq-D~eQ~i~t~d~~~k~~~l~~~i~~g~p~laiCgg 96 (250)
T COG3442 26 LRQRAEKR------GIKVEIVEVSLTD--TFPDDSYDLYFLGGGQ-DYEQEIATRDLLTKKEGLKDAIENGKPVLAICGG 96 (250)
T ss_pred ehHHHHhc------CCceEEEEeecCC--CCCcccccEEEecCch-HHHHHHHhhhhccccHHHHHHHhcCCcEEEEccc
Confidence 44556666 9999887653211 1222257888885553 221 11111234444 57889999 999
Q ss_pred HHHHHHH----hCCeecccc----------ccccccceeEEEcccccccccccCCCCceEEeecccceee-cCCCCCCCe
Q 037843 99 LKCIGEA----LEGRLYVLL----------LVSCMGKALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIE-KDSFRSDEL 163 (203)
Q Consensus 99 ~Qlla~a----~gg~v~~~~----------~~~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~-~~~l~~~~~ 163 (203)
.|+|..+ .|-++..+. ..+..|...++.+..+ ..+.++..-+.+|+-.-. .+...|=|-
T Consensus 97 ~QlLG~yY~~a~G~ri~GlGiLd~~T~~~~~~R~IGdiv~~~~~~~------e~~~et~~GFENH~GrT~L~~d~~pLG~ 170 (250)
T COG3442 97 YQLLGQYYETASGTRIDGLGILDHYTENPQTKRFIGDIVIENTLAG------EEFGETLVGFENHGGRTYLGPDVKPLGK 170 (250)
T ss_pred hhhccceeecCCCcEeecccceeeeeccccccceeeeEEeecccch------HHhCCeeeeeecCCCceecCCCCcccee
Confidence 9999875 344444331 0112233222221110 113345555667754321 111122344
Q ss_pred EEEEEcCC--CcEEEEEeCCCCcEEEEcCC
Q 037843 164 EVTAWTED--GLIMAARHKKYKHLHGVQFH 191 (203)
Q Consensus 164 ~~~a~s~~--~~v~a~~~~~~~~i~gvQfH 191 (203)
.+.+..++ .-.+++.+++ ++|+=||
T Consensus 171 Vv~G~GNn~eD~~eG~~ykn---~~aTY~H 197 (250)
T COG3442 171 VVYGYGNNGEDGTEGAHYKN---VIATYFH 197 (250)
T ss_pred EEEccCCCccccccceeeee---eEEEeec
Confidence 55554432 2356666664 8999998
No 112
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=96.92 E-value=0.0022 Score=50.87 Aligned_cols=87 Identities=9% Similarity=0.084 Sum_probs=53.5
Q ss_pred CCCCcEEEEeCCch----HHHHHHHHHHHhhhhhcCCceEEEEeCCc-cc-HHHHhccCCCEEEECCCCCCCCCc-----
Q 037843 10 NDKNPIVVIDNYDS----FTYNLCQYMGELELELSQGYHFEVYRNDE-LT-VAELKRKKPRGVVISPGPGAPQES----- 78 (203)
Q Consensus 10 ~~~~~i~iid~~~~----~~~~l~~~l~~~~~~~~~g~~~~v~~~~~-~~-~~~l~~~~~dgiil~GG~~~~~~~----- 78 (203)
+..++|++|...+. +..++.++++.+. |+.+..+.... .. .+.+. +.|+|+++|| +....
T Consensus 29 ~~~~~i~~IptAs~~~~~~~~~~~~a~~~l~-----G~~~~~~~~~~~~~~~~~l~--~ad~I~l~GG--~~~~~~~~l~ 99 (212)
T cd03146 29 KARPKVLFVPTASGDRDEYTARFYAAFESLR-----GVEVSHLHLFDTEDPLDALL--EADVIYVGGG--NTFNLLAQWR 99 (212)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHHhhcc-----CcEEEEEeccCcccHHHHHh--cCCEEEECCc--hHHHHHHHHH
Confidence 34688999965543 3444555555541 66666654211 12 34444 6799999886 33211
Q ss_pred -chHHHHHHH-hCCCCcee--ehhHHHHHHH
Q 037843 79 -GISFRTVLE-LGPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 79 -~~~~~~i~~-~~~~~Pil--ClG~Qlla~a 105 (203)
..+.+.|++ +.+++|++ |.|+|+++..
T Consensus 100 ~~~l~~~l~~~~~~g~~i~G~SAGa~i~~~~ 130 (212)
T cd03146 100 EHGLDAILKAALERGVVYIGWSAGSNCWFPS 130 (212)
T ss_pred HcCHHHHHHHHHHCCCEEEEECHhHHhhCCC
Confidence 123455665 46789999 9999999975
No 113
>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.
Probab=96.85 E-value=0.0068 Score=45.66 Aligned_cols=44 Identities=18% Similarity=0.181 Sum_probs=33.3
Q ss_pred CCCEEEECCCCCCCC--CcchHHHHHHH-hCCCCcee--ehhHHHHHHH
Q 037843 62 KPRGVVISPGPGAPQ--ESGISFRTVLE-LGPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 62 ~~dgiil~GG~~~~~--~~~~~~~~i~~-~~~~~Pil--ClG~Qlla~a 105 (203)
++|+|+++||++... ....+.++|++ ..+++||. |-|.++|+.+
T Consensus 62 ~~D~lvvpGG~~~~~~~~~~~~~~~l~~~~~~~~~i~~ic~G~~~La~a 110 (165)
T cd03134 62 DYDALVIPGGTNPDKLRRDPDAVAFVRAFAEAGKPVAAICHGPWVLISA 110 (165)
T ss_pred HCCEEEECCCCChhhhccCHHHHHHHHHHHHcCCeEEEEchHHHHHHhc
Confidence 589999999974321 23446777877 46889998 9999999975
No 114
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=96.83 E-value=0.014 Score=51.22 Aligned_cols=45 Identities=20% Similarity=0.402 Sum_probs=32.0
Q ss_pred CCCEEEECCCCCCCCCc----chHHHHHHH-hCCCCcee--ehhHHHHHHHh
Q 037843 62 KPRGVVISPGPGAPQES----GISFRTVLE-LGPTMPLF--CMGLKCIGEAL 106 (203)
Q Consensus 62 ~~dgiil~GG~~~~~~~----~~~~~~i~~-~~~~~Pil--ClG~Qlla~a~ 106 (203)
++|+|+|+||.-...+. ....+.|++ ..++.||+ |-|+|+|++.+
T Consensus 274 ~~D~l~lpGG~~e~~~~~L~~n~~~~~i~~~~~~G~pi~aeCGG~q~L~~~i 325 (433)
T PRK13896 274 DCDGVYLPGGYPELHADALADSPALDELADRAADGLPVLGECGGLMALAESL 325 (433)
T ss_pred CCCEEEeCCCchhhHHHHHHhCCcHHHHHHHHHCCCcEEEEehHHHHhhccc
Confidence 57999999987433221 111245555 46789999 99999999976
No 115
>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.
Probab=96.83 E-value=0.0055 Score=48.65 Aligned_cols=52 Identities=23% Similarity=0.258 Sum_probs=37.1
Q ss_pred HHHhccCCCEEEECCCCCCC---CC----------cchHHHHHHH-hCCCCcee--ehhHHHHHHHhC
Q 037843 56 AELKRKKPRGVVISPGPGAP---QE----------SGISFRTVLE-LGPTMPLF--CMGLKCIGEALE 107 (203)
Q Consensus 56 ~~l~~~~~dgiil~GG~~~~---~~----------~~~~~~~i~~-~~~~~Pil--ClG~Qlla~a~g 107 (203)
+++...+||+|+|+||.+.. .+ ...+.+++++ .++++||. |-|-++|+.+.+
T Consensus 76 ~ev~~~dyDalviPGG~~~~~~l~D~~~~~~~~~~~~~l~~lv~~f~~~gK~VaAIChgp~~L~~~~~ 143 (213)
T cd03133 76 AKLKAADFDALIFPGGFGAAKNLSDFAVKGADCTVNPEVERLVREFHQAGKPIGAICIAPALAAKILG 143 (213)
T ss_pred HHCCHhHCCEEEECCCCchhhhhhhhcccccccccCHHHHHHHHHHHHCCCeEEEECHHHHHHHHHhc
Confidence 34333369999999997542 11 2235677777 47889998 999999999874
No 116
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=96.82 E-value=0.0066 Score=44.66 Aligned_cols=87 Identities=18% Similarity=0.083 Sum_probs=54.0
Q ss_pred CcEEEEeCCchH---HHHHHHHHHHhhhhhcCCceEEEEeCCc--------------ccHHHHhccCCCEEEECCCCCCC
Q 037843 13 NPIVVIDNYDSF---TYNLCQYMGELELELSQGYHFEVYRNDE--------------LTVAELKRKKPRGVVISPGPGAP 75 (203)
Q Consensus 13 ~~i~iid~~~~~---~~~l~~~l~~~~~~~~~g~~~~v~~~~~--------------~~~~~l~~~~~dgiil~GG~~~~ 75 (203)
++|+|+-+.+.. ...+.+.|+.. |+++.++.... .+.++....+||+|+++||.+..
T Consensus 2 ~~v~ill~~g~~~~e~~~~~~~~~~a------~~~v~vvs~~~~~v~s~~g~~i~~~~~l~~~~~~~~D~liVpGg~~~~ 75 (142)
T cd03132 2 RKVGILVADGVDAAELSALKAALKAA------GANVKVVAPTLGGVVDSDGKTLEVDQTYAGAPSVLFDAVVVPGGAEAA 75 (142)
T ss_pred CEEEEEEcCCcCHHHHHHHHHHHHHC------CCEEEEEecCcCceecCCCcEEecceeecCCChhhcCEEEECCCccCH
Confidence 467777443322 22345666666 78877764321 01122222258999999987643
Q ss_pred C---CcchHHHHHHH-hCCCCcee--ehhHHHHHHH
Q 037843 76 Q---ESGISFRTVLE-LGPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 76 ~---~~~~~~~~i~~-~~~~~Pil--ClG~Qlla~a 105 (203)
. ....+.+++++ ..+++||. |-|-.+|+.+
T Consensus 76 ~~~~~~~~l~~~l~~~~~~~~~I~aic~G~~~La~a 111 (142)
T cd03132 76 FALAPSGRALHFVTEAFKHGKPIGAVGEGSDLLEAA 111 (142)
T ss_pred HHHccChHHHHHHHHHHhcCCeEEEcCchHHHHHHc
Confidence 2 33456778877 46789998 9999999974
No 117
>KOG1907 consensus Phosphoribosylformylglycinamidine synthase [Nucleotide transport and metabolism]
Probab=96.56 E-value=0.025 Score=52.92 Aligned_cols=182 Identities=12% Similarity=0.124 Sum_probs=96.9
Q ss_pred CCCCcEEEEeCCchHHHH-HHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCC--Cc--ch----
Q 037843 10 NDKNPIVVIDNYDSFTYN-LCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQ--ES--GI---- 80 (203)
Q Consensus 10 ~~~~~i~iid~~~~~~~~-l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~--~~--~~---- 80 (203)
++.|||+||--.+.+.+. +..+|... |.+..-+..-+.-.......+|-||+++||..-.+ .. ++
T Consensus 1056 s~~PkVAilREeGvNg~rEMa~af~~A------gF~~~DVtmtDlL~G~~~ld~frGlaf~GGFSYaDvLgSakGWAasi 1129 (1320)
T KOG1907|consen 1056 STAPKVAILREEGVNGDREMAAAFYAA------GFETVDVTMTDLLAGRHHLDDFRGLAFCGGFSYADVLGSAKGWAASI 1129 (1320)
T ss_pred cCCCceEEeeccccccHHHHHHHHHHc------CCceeeeeeehhhcCceeHhHhcceeeecCcchHhhhccccchhhhe
Confidence 346899999766655443 45566666 76643222111111111111578999999985322 11 11
Q ss_pred -----HHHHHHHhCCCCcee----ehhHHHHHHH--hCCeeccccc----cccccc-----eeEEEcccccccccccCCC
Q 037843 81 -----SFRTVLELGPTMPLF----CMGLKCIGEA--LEGRLYVLLL----VSCMGK-----ALVYYNEKEEADGLLAGLS 140 (203)
Q Consensus 81 -----~~~~i~~~~~~~Pil----ClG~Qlla~a--~gg~v~~~~~----~~~~g~-----~~i~~~~~~~~~~lf~~~~ 140 (203)
......++.++.-.| |-|.|+|+.. .|-.+...+. ..+.+. ..+++. ...+-++.++.
T Consensus 1130 l~ne~v~~QF~~F~~R~DtFslGiCNGCQlms~Lg~i~p~~~~~p~~~l~~Nes~rfE~r~~~vkI~--~~~SIml~gM~ 1207 (1320)
T KOG1907|consen 1130 LFNESVRSQFEAFFNRQDTFSLGICNGCQLMSRLGWIGPEVGKWPDVFLDHNESGRFECRFGMVKIE--SNVSIMLSGMA 1207 (1320)
T ss_pred eeChhHHHHHHHHhcCCCceeeecccHhHHHHHhcccCccccCCCceeeecccccceeeeEEEEEeC--CCchhhhcccc
Confidence 122333343444455 9999999984 3333333221 111222 233333 22244556654
Q ss_pred -CceEEeeccccee---ecC----CCCCCCeEEEEEcC-------------CC---cEEEEEeCCCCcEEEEcCCCCCCC
Q 037843 141 -NPFTAGRYHGLVI---EKD----SFRSDELEVTAWTE-------------DG---LIMAARHKKYKHLHGVQFHPESIL 196 (203)
Q Consensus 141 -~~~~~~~~H~~~v---~~~----~l~~~~~~~~a~s~-------------~~---~v~a~~~~~~~~i~gvQfHPE~~~ 196 (203)
..+-++..|+..= ..+ .+..+++..+-+-+ ++ -|.++...+.+ .++..=||||..
T Consensus 1208 gs~LgvwvAHGEGRa~f~~e~~~e~~~~~gl~~iryvdd~g~~te~yPfNpNGS~~gIAgicSpdGR-hLAMMPHpER~~ 1286 (1320)
T KOG1907|consen 1208 GSVLGVWVAHGEGRATFRSEQNLEHLKKEGLVCIRYVDDYGNVTELYPFNPNGSPDGIAGICSPDGR-HLAMMPHPERVF 1286 (1320)
T ss_pred CCceeeEEEecccceecCcHHHHHHHhhcCeeEEEEecCCCCEeeecccCCCCCcccceeeeCCCCC-eeeccCCchhee
Confidence 3566777776542 111 23334554444321 22 47889999988 899999999986
Q ss_pred CCCC
Q 037843 197 TSEG 200 (203)
Q Consensus 197 ~~~g 200 (203)
.-|.
T Consensus 1287 l~~q 1290 (1320)
T KOG1907|consen 1287 LMWQ 1290 (1320)
T ss_pred eeee
Confidence 5443
No 118
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=96.53 E-value=0.0087 Score=48.13 Aligned_cols=45 Identities=9% Similarity=0.091 Sum_probs=34.8
Q ss_pred cCCCEEEECCCCCCCCC---cchHHHHHHHh-CCCCcee--ehhHHHHHHH
Q 037843 61 KKPRGVVISPGPGAPQE---SGISFRTVLEL-GPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 61 ~~~dgiil~GG~~~~~~---~~~~~~~i~~~-~~~~Pil--ClG~Qlla~a 105 (203)
.+||+|+|+||.+...+ ...+.++++++ ++++||- |-|-++|+.+
T Consensus 93 ~dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~iaAIChgp~~L~~a 143 (231)
T cd03147 93 DDYGIFFVAGGHGTLFDFPHATNLQKIAQQIYANGGVVAAVCHGPAILANL 143 (231)
T ss_pred hhCcEEEECCCCchhhhcccCHHHHHHHHHHHHcCCEEEEEChHHHHHHhh
Confidence 37999999999775433 33456777774 6788998 9999999886
No 119
>PRK11574 oxidative-stress-resistance chaperone; Provisional
Probab=96.47 E-value=0.029 Score=43.56 Aligned_cols=50 Identities=14% Similarity=0.151 Sum_probs=34.0
Q ss_pred HHHHhccCCCEEEECCCCCCCC---CcchHHHHHHHh-CCCCcee--ehhHHHHHH
Q 037843 55 VAELKRKKPRGVVISPGPGAPQ---ESGISFRTVLEL-GPTMPLF--CMGLKCIGE 104 (203)
Q Consensus 55 ~~~l~~~~~dgiil~GG~~~~~---~~~~~~~~i~~~-~~~~Pil--ClG~Qlla~ 104 (203)
.+++...++|.|+++||.+.+. +...+.++++++ .++++|. |-|-.+|..
T Consensus 59 l~~~~~~~~D~l~ipGG~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~~ll~ 114 (196)
T PRK11574 59 LVEVADGDFDVIVLPGGIKGAECFRDSPLLVETVRQFHRSGRIVAAICAAPATVLV 114 (196)
T ss_pred HHHCCCCCCCEEEECCCCchhhhhhhCHHHHHHHHHHHHCCCEEEEECHhHHHHHH
Confidence 3443323689999999865432 233467788774 6788998 999987554
No 120
>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]
Probab=96.14 E-value=0.024 Score=43.67 Aligned_cols=45 Identities=20% Similarity=0.224 Sum_probs=35.1
Q ss_pred CCCEEEECCC-CCCCCCc--chHHHHHHHh-CCCCcee--ehhHHHHHHHh
Q 037843 62 KPRGVVISPG-PGAPQES--GISFRTVLEL-GPTMPLF--CMGLKCIGEAL 106 (203)
Q Consensus 62 ~~dgiil~GG-~~~~~~~--~~~~~~i~~~-~~~~Pil--ClG~Qlla~a~ 106 (203)
+||+|+++|| .+..... ..+.++++++ ..++||. |-|-++|+.+-
T Consensus 66 ~ydal~ipGG~~~~~~~~~~~~~~~~v~~~~~~~k~vaaIC~g~~~L~~ag 116 (188)
T COG0693 66 DYDALVIPGGDHGPEYLRPDPDLLAFVRDFYANGKPVAAICHGPAVLAAAG 116 (188)
T ss_pred HCCEEEECCCccchhhccCcHHHHHHHHHHHHcCCEEEEEChhHHHHhccc
Confidence 7899999999 5544333 3567788884 6789999 99999999763
No 121
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=96.05 E-value=0.025 Score=45.51 Aligned_cols=88 Identities=14% Similarity=0.196 Sum_probs=56.6
Q ss_pred CCcEEEEeCCc------hHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCC----CcchH
Q 037843 12 KNPIVVIDNYD------SFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQ----ESGIS 81 (203)
Q Consensus 12 ~~~i~iid~~~------~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~----~~~~~ 81 (203)
.++|++|..-+ .+...+.++++++ |+.+..++..+...+.+. +.|+|+++||-.... ....+
T Consensus 31 ~~~v~fIPtAs~~~~~~~y~~~~~~af~~l------G~~v~~l~~~~d~~~~l~--~ad~I~v~GGnt~~l~~~l~~~gl 102 (233)
T PRK05282 31 RRKAVFIPYAGVTQSWDDYTAKVAEALAPL------GIEVTGIHRVADPVAAIE--NAEAIFVGGGNTFQLLKQLYERGL 102 (233)
T ss_pred CCeEEEECCCCCCCCHHHHHHHHHHHHHHC------CCEEEEeccchhhHHHHh--cCCEEEECCccHHHHHHHHHHCCc
Confidence 58899995443 2455677788888 999877754321223344 579999998843211 11123
Q ss_pred HHHHHH-hCCCCcee--ehhHHHHHHHhC
Q 037843 82 FRTVLE-LGPTMPLF--CMGLKCIGEALE 107 (203)
Q Consensus 82 ~~~i~~-~~~~~Pil--ClG~Qlla~a~g 107 (203)
.+.|++ +.+++|++ |-|.-+++....
T Consensus 103 ~~~l~~~~~~G~~~~G~SAGAii~~~~i~ 131 (233)
T PRK05282 103 LAPIREAVKNGTPYIGWSAGANVAGPTIR 131 (233)
T ss_pred HHHHHHHHHCCCEEEEECHHHHhhhccce
Confidence 455555 56789999 999988877544
No 122
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=95.96 E-value=0.0042 Score=55.18 Aligned_cols=45 Identities=16% Similarity=0.172 Sum_probs=31.9
Q ss_pred CCCEEEECCCCCCCCCcc-----hHHHHHHH-hCCCCcee--ehhHHHHHHHh
Q 037843 62 KPRGVVISPGPGAPQESG-----ISFRTVLE-LGPTMPLF--CMGLKCIGEAL 106 (203)
Q Consensus 62 ~~dgiil~GG~~~~~~~~-----~~~~~i~~-~~~~~Pil--ClG~Qlla~a~ 106 (203)
++|+|+|+||.....+.. .+.+.|++ ...+.||| |.|||+|++.+
T Consensus 284 ~~d~lilpGg~~~~~~~~~l~~~~~~~~i~~~~~~G~pvlgiCgG~q~Lg~~i 336 (475)
T TIGR00313 284 GCDAVIIPGSKSTIADLYALKQSGFAEEILDFAKEGGIVIGICGGYQMLGKEL 336 (475)
T ss_pred cCCEEEECCcchHHHHHHHHHhcChHHHHHHHHHcCCcEEEEcHHHHHhhhhh
Confidence 679999988863222211 13455666 46789999 99999999975
No 123
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=95.59 E-value=0.017 Score=50.92 Aligned_cols=59 Identities=15% Similarity=0.255 Sum_probs=38.4
Q ss_pred CceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCc-----chHHHHHHH-hCCCCcee--ehhHHHHHHHh
Q 037843 42 GYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQES-----GISFRTVLE-LGPTMPLF--CMGLKCIGEAL 106 (203)
Q Consensus 42 g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~-----~~~~~~i~~-~~~~~Pil--ClG~Qlla~a~ 106 (203)
++++.+++.. +++. ++|.|||+|+-....|- ..+.+.+.+ ..++.||+ |-|||||...+
T Consensus 276 ~v~v~~v~~~----~~l~--~~dlvIlPGsk~t~~DL~~lr~~g~d~~i~~~~~~~~~viGICGG~QmLG~~i 342 (486)
T COG1492 276 DVRVRFVKPG----SDLR--DADLVILPGSKNTIADLKILREGGMDEKILEYARKGGDVIGICGGYQMLGRRL 342 (486)
T ss_pred CeEEEEeccC----CCCC--CCCEEEeCCCcccHHHHHHHHHcCHHHHHHHHHhCCCCEEEEcchHHhhhhhh
Confidence 7788777542 3444 47999997765444332 123334444 45689999 99999998764
No 124
>PRK04155 chaperone protein HchA; Provisional
Probab=95.55 E-value=0.052 Score=45.12 Aligned_cols=45 Identities=22% Similarity=0.152 Sum_probs=34.0
Q ss_pred cCCCEEEECCCCCCCCC---cchHHHHHHH-hCCCCcee--ehhHHHHHHH
Q 037843 61 KKPRGVVISPGPGAPQE---SGISFRTVLE-LGPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 61 ~~~dgiil~GG~~~~~~---~~~~~~~i~~-~~~~~Pil--ClG~Qlla~a 105 (203)
.+||+|+|+||.+...+ ...+.+++++ .++++||- |-|-++|..+
T Consensus 146 ~dYDaV~iPGG~g~~~dL~~~~~l~~ll~~~~~~~K~VaAICHGPa~Ll~a 196 (287)
T PRK04155 146 SDYAAVFIPGGHGALIGLPESEDVAAALQWALDNDRFIITLCHGPAALLAA 196 (287)
T ss_pred ccccEEEECCCCchHHHHhhCHHHHHHHHHHHHcCCEEEEEChHHHHHHHc
Confidence 47999999999876443 3345677777 47789998 9999877763
No 125
>PRK11249 katE hydroperoxidase II; Provisional
Probab=95.39 E-value=0.046 Score=50.92 Aligned_cols=88 Identities=14% Similarity=0.069 Sum_probs=55.0
Q ss_pred CCcEEEEeCCchH---HHHHHHHHHHhhhhhcCCceEEEEeCCc--------------ccHHHHhccCCCEEEECCCCCC
Q 037843 12 KNPIVVIDNYDSF---TYNLCQYMGELELELSQGYHFEVYRNDE--------------LTVAELKRKKPRGVVISPGPGA 74 (203)
Q Consensus 12 ~~~i~iid~~~~~---~~~l~~~l~~~~~~~~~g~~~~v~~~~~--------------~~~~~l~~~~~dgiil~GG~~~ 74 (203)
+++|+||-..+.. ...+.++|+.. |+.+.++-... .+.++.....||+|+|+||...
T Consensus 597 gRKIaILVaDG~d~~ev~~~~daL~~A------Ga~V~VVSp~~G~V~~s~G~~I~aD~t~~~~~Sv~FDAVvVPGG~~~ 670 (752)
T PRK11249 597 GRKVAILLNDGVDAADLLAILKALKAK------GVHAKLLYPRMGEVTADDGTVLPIAATFAGAPSLTFDAVIVPGGKAN 670 (752)
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHHHC------CCEEEEEECCCCeEECCCCCEEecceeeccCCccCCCEEEECCCchh
Confidence 4678777443322 23355666666 77777664310 1122222225899999998654
Q ss_pred CC---CcchHHHHHHH-hCCCCcee--ehhHHHHHHH
Q 037843 75 PQ---ESGISFRTVLE-LGPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 75 ~~---~~~~~~~~i~~-~~~~~Pil--ClG~Qlla~a 105 (203)
+. .......+|++ +.+.++|- |-|.++|+.+
T Consensus 671 ~~~L~~d~~al~fL~eaykHgK~IAAiCaG~~LLaaA 707 (752)
T PRK11249 671 IADLADNGDARYYLLEAYKHLKPIALAGDARKLKAAL 707 (752)
T ss_pred HHHHhhCHHHHHHHHHHHHcCCEEEEeCccHHHHHhc
Confidence 32 23456777877 57889998 9999999974
No 126
>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity. Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....
Probab=95.32 E-value=0.0078 Score=44.69 Aligned_cols=53 Identities=19% Similarity=0.348 Sum_probs=38.1
Q ss_pred ccHHHHhccCCCEEEECCCCCCCC----CcchHHHHHHHh-CCCCcee--ehhHHHHHHH
Q 037843 53 LTVAELKRKKPRGVVISPGPGAPQ----ESGISFRTVLEL-GPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 53 ~~~~~l~~~~~dgiil~GG~~~~~----~~~~~~~~i~~~-~~~~Pil--ClG~Qlla~a 105 (203)
.+.+++...+||+|||+||.+.+. +...+.++++++ .+++||- |-|-.+|+.+
T Consensus 28 ~~l~~~~~~~yDalilpGG~~~~~~l~~~~~~l~~~~~~~~~~~k~iaaIC~g~~~L~~~ 87 (147)
T PF01965_consen 28 KTLDEIDPSDYDALILPGGHGGADDLRTDSKDLLELLKEFYEAGKPIAAICHGPAVLAAA 87 (147)
T ss_dssp EEGGGHTGGGESEEEEE-BTHHHHHHTTCHHHHHHHHHHHHHTT-EEEEETTCHHHHHHT
T ss_pred CcHHHCChhhCCEEEECCCCchhhhHhhHHHHHHHHHHHHHHcCCeEEecCCCcchhhcc
Confidence 455666655799999999987432 224567888884 6789998 9999988876
No 127
>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=95.27 E-value=0.033 Score=42.33 Aligned_cols=44 Identities=14% Similarity=0.080 Sum_probs=33.1
Q ss_pred CCCEEEECCCCCCC-CCcchHHHHHHHh-CCCCcee--ehhHHHHHHH
Q 037843 62 KPRGVVISPGPGAP-QESGISFRTVLEL-GPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 62 ~~dgiil~GG~~~~-~~~~~~~~~i~~~-~~~~Pil--ClG~Qlla~a 105 (203)
++|.|+|+||.... .....+.++|+++ .++++|. |-|.++|+.+
T Consensus 60 ~~D~l~I~Gg~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 107 (170)
T cd03140 60 DYDLLILPGGDSWDNPEAPDLAGLVRQALKQGKPVAAICGATLALARA 107 (170)
T ss_pred HccEEEEcCCcccccCCcHHHHHHHHHHHHcCCEEEEEChHHHHHHHC
Confidence 68999999996522 2233467778874 6778888 9999999985
No 128
>PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown. It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase.
Probab=95.27 E-value=1 Score=38.70 Aligned_cols=128 Identities=20% Similarity=0.164 Sum_probs=68.3
Q ss_pred CCCEEEECCCCCCCCCc---chHHHHHHHh-CCCCcee--ehhHHHHHHHh----CCe---ecccc-----cc-------
Q 037843 62 KPRGVVISPGPGAPQES---GISFRTVLEL-GPTMPLF--CMGLKCIGEAL----EGR---LYVLL-----LV------- 116 (203)
Q Consensus 62 ~~dgiil~GG~~~~~~~---~~~~~~i~~~-~~~~Pil--ClG~Qlla~a~----gg~---v~~~~-----~~------- 116 (203)
+++.+|++||.+.++.. +.-.+.|+++ .++--.| |.|.-.-+... |.. |.... .+
T Consensus 49 ~~~LlV~PGG~d~~y~~~l~~~g~~~Ir~fV~~GG~YlGiCAGaY~as~~~ef~~g~p~lev~g~ReL~ffpG~~rG~~~ 128 (367)
T PF09825_consen 49 KCALLVMPGGADLPYCRSLNGEGNRRIRQFVENGGGYLGICAGAYYASSRCEFEVGNPKLEVVGPRELAFFPGIARGPAF 128 (367)
T ss_pred CCcEEEECCCcchHHHHhhChHHHHHHHHHHHcCCcEEEECcchhhhcceeEeccCCcceEeecCcccccccCCccCccc
Confidence 68999999998776532 2225667774 5677788 99988776531 221 11000 00
Q ss_pred ------ccccceeEEEcccccccccccCCCCceEEeecccceeec-CCCCCCCeEEEEEcCC--------C--cEEEEEe
Q 037843 117 ------SCMGKALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEK-DSFRSDELEVTAWTED--------G--LIMAARH 179 (203)
Q Consensus 117 ------~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~-~~l~~~~~~~~a~s~~--------~--~v~a~~~ 179 (203)
.+.|...+.+... .. ...+..+.++.+.+-.+.. +.. +.+.+++|+-.+ . .+-..+.
T Consensus 129 ~gf~Y~se~Gara~~l~~~---~~--~~~~~~~~~yynGG~~Fv~~~~~-~~~v~vLA~Y~~~~~v~~~~~~aAvV~c~v 202 (367)
T PF09825_consen 129 PGFQYNSESGARAVKLKVN---DS--QAVPSEFSSYYNGGGVFVDADKY-DKNVEVLARYEDDLDVPGGEGKAAVVYCKV 202 (367)
T ss_pred cCCccCCCCCeEeEEEEec---CC--CCCCceeEEEECCceEEeCcccc-CCCeEEEEEEecCCCCCCCCCCcEEEEEEe
Confidence 1112211111111 00 1234555555544444432 222 368899998643 1 1233345
Q ss_pred CCCCcEEEEcCCCCCCC
Q 037843 180 KKYKHLHGVQFHPESIL 196 (203)
Q Consensus 180 ~~~~~i~gvQfHPE~~~ 196 (203)
.+.. ++-+-.|||...
T Consensus 203 GkG~-aiLsG~HpE~~~ 218 (367)
T PF09825_consen 203 GKGR-AILSGPHPEFSP 218 (367)
T ss_pred CCce-EEEEecccccCh
Confidence 5555 888999999974
No 129
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=95.25 E-value=0.092 Score=42.24 Aligned_cols=44 Identities=20% Similarity=0.089 Sum_probs=33.6
Q ss_pred CCCEEEECCCCCCCCC---cchHHHHHHHh-CCCCcee--ehhHHHHHHH
Q 037843 62 KPRGVVISPGPGAPQE---SGISFRTVLEL-GPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 62 ~~dgiil~GG~~~~~~---~~~~~~~i~~~-~~~~Pil--ClG~Qlla~a 105 (203)
+||+|+++||.+...+ ...+.++++++ ++++||- |-|-++|..+
T Consensus 96 dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~VaAICHGp~~L~~a 145 (232)
T cd03148 96 EYAAVFIPGGHGALIGIPESQDVAAALQWAIKNDRFVITLCHGPAAFLAA 145 (232)
T ss_pred hceEEEECCCCCChhhcccCHHHHHHHHHHHHcCCEEEEECcHHHHHHhc
Confidence 7999999999776543 23456777774 6788888 9999977764
No 130
>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly
Probab=94.87 E-value=0.063 Score=40.09 Aligned_cols=44 Identities=16% Similarity=0.233 Sum_probs=33.6
Q ss_pred CCCEEEECCCCCCCC---CcchHHHHHHHh-CCCCcee--ehhHHHHHHH
Q 037843 62 KPRGVVISPGPGAPQ---ESGISFRTVLEL-GPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 62 ~~dgiil~GG~~~~~---~~~~~~~~i~~~-~~~~Pil--ClG~Qlla~a 105 (203)
++|.|+++||.+... +...+.++++++ .++++|. |-|..+|+.+
T Consensus 60 ~~D~liipGg~~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~g~~~La~a 109 (163)
T cd03135 60 DYDAIVIPGGLPGAQNLADNEKLIKLLKEFNAKGKLIAAICAAPAVLAKA 109 (163)
T ss_pred CCCEEEECCCCchHHHHHhCHHHHHHHHHHHHcCCEEEEEchhHHHHHHc
Confidence 789999999873322 344567788774 6778888 9999999986
No 131
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=94.86 E-value=0.19 Score=39.57 Aligned_cols=87 Identities=13% Similarity=0.121 Sum_probs=55.2
Q ss_pred CCCcEEEEeCCc----hHHHHHHHHHHHhhhhhcCCceEEEEeCCc--ccH---HHHhccCCCEEEECCCCCCCC-----
Q 037843 11 DKNPIVVIDNYD----SFTYNLCQYMGELELELSQGYHFEVYRNDE--LTV---AELKRKKPRGVVISPGPGAPQ----- 76 (203)
Q Consensus 11 ~~~~i~iid~~~----~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~--~~~---~~l~~~~~dgiil~GG~~~~~----- 76 (203)
..++|++|...+ .+...+.++++.+ |+.+..+.... .+. +.+. +.|+|+++||.-...
T Consensus 28 ~~~~i~~iptA~~~~~~~~~~~~~~~~~l------G~~~~~~~~~~~~~~~~~~~~l~--~ad~I~~~GG~~~~~~~~l~ 99 (210)
T cd03129 28 AGARVLFIPTASGDRDEYGEEYRAAFERL------GVEVVHLLLIDTANDPDVVARLL--EADGIFVGGGNQLRLLSVLR 99 (210)
T ss_pred CCCeEEEEeCCCCChHHHHHHHHHHHHHc------CCceEEEeccCCCCCHHHHHHHh--hCCEEEEcCCcHHHHHHHHH
Confidence 468999997665 3456677888888 88877654321 112 2233 679999988743211
Q ss_pred CcchHHHHHHHhCCCCcee--ehhHHHHHHH
Q 037843 77 ESGISFRTVLELGPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 77 ~~~~~~~~i~~~~~~~Pil--ClG~Qlla~a 105 (203)
..+....+++.+.++.|+. |-|..+++..
T Consensus 100 ~t~~~~~i~~~~~~G~v~~G~SAGA~~~~~~ 130 (210)
T cd03129 100 ETPLLDAILKRVARGVVIGGTSAGAAVMGET 130 (210)
T ss_pred hCChHHHHHHHHHcCCeEEEcCHHHHHhhhc
Confidence 1112223333355778999 9999999986
No 132
>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different
Probab=94.83 E-value=0.035 Score=44.24 Aligned_cols=44 Identities=14% Similarity=0.120 Sum_probs=34.1
Q ss_pred CCCEEEECCCCCCCC---CcchHHHHHHHh-CCCCcee--ehhHHHHHHH
Q 037843 62 KPRGVVISPGPGAPQ---ESGISFRTVLEL-GPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 62 ~~dgiil~GG~~~~~---~~~~~~~~i~~~-~~~~Pil--ClG~Qlla~a 105 (203)
+||+|+|+||.+... +...+.++++++ .++++|. |-|-++|+.+
T Consensus 90 ~~dal~ipGG~~~~~~l~~~~~l~~~l~~~~~~~k~iaaIC~g~~~La~a 139 (221)
T cd03141 90 DYDAIFIPGGHGPMFDLPDNPDLQDLLREFYENGKVVAAVCHGPAALLNV 139 (221)
T ss_pred HceEEEECCCcccccccccCHHHHHHHHHHHHcCCEEEEEcchHHHHHhc
Confidence 689999999976433 234467888774 6788888 9999999985
No 133
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=94.38 E-value=0.59 Score=40.88 Aligned_cols=128 Identities=20% Similarity=0.278 Sum_probs=72.3
Q ss_pred CcEEEEeCCchH----HHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCC-----CcchHHH
Q 037843 13 NPIVVIDNYDSF----TYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQ-----ESGISFR 83 (203)
Q Consensus 13 ~~i~iid~~~~~----~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~-----~~~~~~~ 83 (203)
.||+|..-. .| ..|+ +.|++. |++++.+.+- .-+++.+ ++|+|.|+||.=-.+ +.....+
T Consensus 246 ~rIAVA~D~-AF~FyY~~nl-~~Lr~~------GAelv~FSPL--~D~~lP~-~~D~vYlgGGYPElfA~~L~~n~~~~~ 314 (451)
T COG1797 246 VRIAVARDA-AFNFYYPENL-ELLREA------GAELVFFSPL--ADEELPP-DVDAVYLGGGYPELFAEELSANESMRR 314 (451)
T ss_pred ceEEEEecc-hhccccHHHH-HHHHHC------CCEEEEeCCc--CCCCCCC-CCCEEEeCCCChHHHHHHHhhCHHHHH
Confidence 578888422 22 3333 467777 9998776431 2234443 479999988852211 1222466
Q ss_pred HHHHh-CCCCcee--ehhHHHHHHHh---CCeeccccc---------cc--cccceeEEEcccccccccccCCCCceEEe
Q 037843 84 TVLEL-GPTMPLF--CMGLKCIGEAL---EGRLYVLLL---------VS--CMGKALVYYNEKEEADGLLAGLSNPFTAG 146 (203)
Q Consensus 84 ~i~~~-~~~~Pil--ClG~Qlla~a~---gg~v~~~~~---------~~--~~g~~~i~~~~~~~~~~lf~~~~~~~~~~ 146 (203)
.|+++ +.++||+ |-|+--|++.+ .|+...+.. .. ..|...+.... +.++..-...++-+
T Consensus 315 ~i~~~~~~G~piyaECGGlMYL~~~le~~~G~~~~M~Gvlp~~~~m~~Rl~~lGY~~~~~~~----d~~~~~~G~~irGH 390 (451)
T COG1797 315 AIKAFAAAGKPIYAECGGLMYLGESLEDADGDTYEMVGVLPGSTRMTKRLQALGYREAEAVD----DTLLLRAGEKIRGH 390 (451)
T ss_pred HHHHHHHcCCceEEecccceeehhheeccCCceeeeeeeeccchhhhhhhhccceeEEEecC----CcccccCCceeeee
Confidence 67774 6789999 99999999876 333333320 01 12333333322 33444444567777
Q ss_pred ecccceeec
Q 037843 147 RYHGLVIEK 155 (203)
Q Consensus 147 ~~H~~~v~~ 155 (203)
.+|.-.+..
T Consensus 391 EFHyS~~~~ 399 (451)
T COG1797 391 EFHYSRLIT 399 (451)
T ss_pred eeeeeeccc
Confidence 777666643
No 134
>PRK05568 flavodoxin; Provisional
Probab=93.98 E-value=1 Score=32.76 Aligned_cols=55 Identities=18% Similarity=0.196 Sum_probs=36.1
Q ss_pred CcEEEE-eCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCC
Q 037843 13 NPIVVI-DNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGP 72 (203)
Q Consensus 13 ~~i~ii-d~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~ 72 (203)
.+++|+ ....+++..+++.+.+... ..|+.+++++..+.+..++. ++|+||| |.|
T Consensus 2 ~~~~IvY~S~~GnT~~~a~~i~~~~~--~~g~~v~~~~~~~~~~~~~~--~~d~iil-gsp 57 (142)
T PRK05568 2 KKINIIYWSGTGNTEAMANLIAEGAK--ENGAEVKLLNVSEASVDDVK--GADVVAL-GSP 57 (142)
T ss_pred CeEEEEEECCCchHHHHHHHHHHHHH--HCCCeEEEEECCCCCHHHHH--hCCEEEE-ECC
Confidence 345554 6667888888877755321 22788888876555556665 5799999 544
No 135
>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=93.71 E-value=0.13 Score=39.50 Aligned_cols=44 Identities=16% Similarity=0.269 Sum_probs=33.9
Q ss_pred CCCEEEECCCCCCC--CCcchHHHHHHHh-CCCCcee--ehhHHHHHHH
Q 037843 62 KPRGVVISPGPGAP--QESGISFRTVLEL-GPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 62 ~~dgiil~GG~~~~--~~~~~~~~~i~~~-~~~~Pil--ClG~Qlla~a 105 (203)
++|.|+++||.+.. .+...+.++++++ .++++|. |-|-++|+.+
T Consensus 64 ~~D~liipGg~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~a 112 (187)
T cd03137 64 AADTVIVPGGPDVDGRPPPPALLAALRRAAARGARVASVCTGAFVLAEA 112 (187)
T ss_pred CCCEEEECCCcccccccCCHHHHHHHHHHHhcCCEEEEECHHHHHHHHc
Confidence 68999999986653 2234467788874 6778888 9999999985
No 136
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=93.62 E-value=0.57 Score=35.95 Aligned_cols=79 Identities=15% Similarity=0.169 Sum_probs=44.9
Q ss_pred cEEEE-eCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCC-cchHHHHHHHh---
Q 037843 14 PIVVI-DNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQE-SGISFRTVLEL--- 88 (203)
Q Consensus 14 ~i~ii-d~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~-~~~~~~~i~~~--- 88 (203)
+++|+ ....+.+.-+++++.+... . |..+++++..+....++. +||.||| |+|-.... ...+..++.+.
T Consensus 2 kilIvY~S~~G~T~~iA~~Ia~~l~--~-g~~v~~~~~~~~~~~~l~--~yD~vIl-Gspi~~G~~~~~~~~fl~~~~~~ 75 (177)
T PRK11104 2 KTLILYSSRDGQTRKIASYIASELK--E-GIQCDVVNLHRIEEPDLS--DYDRVVI-GASIRYGHFHSALYKFVKKHATQ 75 (177)
T ss_pred cEEEEEECCCChHHHHHHHHHHHhC--C-CCeEEEEEhhhcCccCHH--HCCEEEE-ECccccCCcCHHHHHHHHHHHHH
Confidence 45554 6666788888888866521 2 567777765433333444 5899999 54432222 22333444332
Q ss_pred CCCCcee--ehh
Q 037843 89 GPTMPLF--CMG 98 (203)
Q Consensus 89 ~~~~Pil--ClG 98 (203)
-.++|+. |.|
T Consensus 76 l~~K~v~~F~v~ 87 (177)
T PRK11104 76 LNQMPSAFFSVN 87 (177)
T ss_pred hCCCeEEEEEec
Confidence 2568887 666
No 137
>cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.
Probab=93.53 E-value=0.26 Score=35.15 Aligned_cols=39 Identities=21% Similarity=0.296 Sum_probs=26.1
Q ss_pred CCCEEEECCCCCCCC-----CcchHHHHHHH-hCCCCcee--ehhHHHH
Q 037843 62 KPRGVVISPGPGAPQ-----ESGISFRTVLE-LGPTMPLF--CMGLKCI 102 (203)
Q Consensus 62 ~~dgiil~GG~~~~~-----~~~~~~~~i~~-~~~~~Pil--ClG~Qll 102 (203)
++|.||++||..... ..+ .+.|++ ..+++|+| |+|.-+.
T Consensus 44 ~ad~lVlPGGa~~~~~~~L~~~g--~~~i~~~v~~g~p~LGIClGAy~a 90 (114)
T cd03144 44 KTALLVVPGGADLPYCRALNGKG--NRRIRNFVRNGGNYLGICAGAYLA 90 (114)
T ss_pred CCCEEEECCCChHHHHHHHHhhC--cHHHHHHHHCCCcEEEEecCccce
Confidence 689999988543211 112 455565 46789999 9998776
No 138
>TIGR01383 not_thiJ DJ-1 family protein. This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.
Probab=93.29 E-value=0.13 Score=39.11 Aligned_cols=44 Identities=11% Similarity=0.140 Sum_probs=33.1
Q ss_pred CCCEEEECCCCCCC---CCcchHHHHHHHh-CCCCcee--ehhHHHHHHH
Q 037843 62 KPRGVVISPGPGAP---QESGISFRTVLEL-GPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 62 ~~dgiil~GG~~~~---~~~~~~~~~i~~~-~~~~Pil--ClG~Qlla~a 105 (203)
++|.|+|+||.... .+...+.+++++. .++++|. |-|-.+|+.+
T Consensus 63 ~~D~l~v~Gg~~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~G~~~La~a 112 (179)
T TIGR01383 63 EFDAIVLPGGMPGAENLRNSKLLLNILKKQESKGKLVAAICAAPAVLLAA 112 (179)
T ss_pred cCCEEEECCCchHHHHHhhCHHHHHHHHHHHHCCCEEEEEChhHHHHHhc
Confidence 68999999885322 2334467788874 6778888 9999999986
No 139
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=92.61 E-value=2.8 Score=32.99 Aligned_cols=143 Identities=17% Similarity=0.112 Sum_probs=66.5
Q ss_pred cEEEEeCC-chHH----HHHHHHHHHhhhhhcCCceEEEEeC-CcccHHHHhccCCCEEEECCCCCCCCCcchHHHHHHH
Q 037843 14 PIVVIDNY-DSFT----YNLCQYMGELELELSQGYHFEVYRN-DELTVAELKRKKPRGVVISPGPGAPQESGISFRTVLE 87 (203)
Q Consensus 14 ~i~iid~~-~~~~----~~l~~~l~~~~~~~~~g~~~~v~~~-~~~~~~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~ 87 (203)
|||||.-. .++. ....++|+.++.+ ..++++++... +..+.+.|. ++|.||+....+..- .....+.+++
T Consensus 1 kvLi~~g~~~~~~h~~~~~~~~~l~~ll~~-~~~~~v~~~~~~~~~~~~~L~--~~Dvvv~~~~~~~~l-~~~~~~al~~ 76 (217)
T PF06283_consen 1 KVLIFSGGWSGYRHDSIPAAKKALAQLLEE-SEGFEVTVTEDPDDLTPENLK--GYDVVVFYNTGGDEL-TDEQRAALRD 76 (217)
T ss_dssp EEEEEES-SHHHCSHHHHHHHHHHHHHHHH-TTCEEEEECCSGGCTSHHCHC--T-SEEEEE-SSCCGS--HHHHHHHHH
T ss_pred CEEEEeCCcCCccCccHHHHHHHHHHHhcc-CCCEEEEEEeCcccCChhHhc--CCCEEEEECCCCCcC-CHHHHHHHHH
Confidence 67888554 2221 1223334333211 23888877542 223455554 789999876654221 2222344555
Q ss_pred -hCCCCcee-eh-hH-------HHHHHHhCCeeccccccccccceeEEEcccccccccccCCCCceEEee--cccceeec
Q 037843 88 -LGPTMPLF-CM-GL-------KCIGEALEGRLYVLLLVSCMGKALVYYNEKEEADGLLAGLSNPFTAGR--YHGLVIEK 155 (203)
Q Consensus 88 -~~~~~Pil-Cl-G~-------Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~--~H~~~v~~ 155 (203)
++++.+++ .- +. .-....+||.....+ .. .+..+....+.+|+.++++..|.+.- |....
T Consensus 77 ~v~~Ggglv~lH~~~~~~~~~~~~~~~l~Gg~f~~h~---~~--~~~~v~~~~~~HPi~~gl~~~f~~~DE~Y~~~~--- 148 (217)
T PF06283_consen 77 YVENGGGLVGLHGAATDSFPDWPEYNELLGGYFKGHP---PP--QPFTVRVEDPDHPITRGLPESFTIYDEWYYFLR--- 148 (217)
T ss_dssp HHHTT-EEEEEGGGGGCCHTT-HHHHHHHS--SEEEE---CE--EEEEEEESSTTSCCCTTS-SEEEEEEEEEES-B---
T ss_pred HHHcCCCEEEEcccccccchhHHHHHHeeCccccCCC---CC--ceEEEEEcCCCChhhcCCCCCceEccccccccc---
Confidence 46789998 32 22 123445666543322 11 23333333445999999987776631 11111
Q ss_pred CCCCCCCeEEEEEcC
Q 037843 156 DSFRSDELEVTAWTE 170 (203)
Q Consensus 156 ~~l~~~~~~~~a~s~ 170 (203)
.+.++..+|++..
T Consensus 149 --~~~~~~~vL~~~~ 161 (217)
T PF06283_consen 149 --DPRPNVTVLLTAD 161 (217)
T ss_dssp --S---CEEEEEEEE
T ss_pred --CCCCCEEEEEEEE
Confidence 1334688887764
No 140
>PRK05569 flavodoxin; Provisional
Probab=92.48 E-value=0.9 Score=33.11 Aligned_cols=55 Identities=13% Similarity=0.165 Sum_probs=35.5
Q ss_pred CcEEEE-eCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCC
Q 037843 13 NPIVVI-DNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGP 72 (203)
Q Consensus 13 ~~i~ii-d~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~ 72 (203)
.+|+|+ ....+++..+++.+.+...+ .|+.+++++....+..++. ++|+|+| |.|
T Consensus 2 ~ki~iiY~S~tGnT~~iA~~i~~~~~~--~g~~v~~~~~~~~~~~~~~--~~d~iil-gsP 57 (141)
T PRK05569 2 KKVSIIYWSCGGNVEVLANTIADGAKE--AGAEVTIKHVADAKVEDVL--EADAVAF-GSP 57 (141)
T ss_pred CeEEEEEECCCCHHHHHHHHHHHHHHh--CCCeEEEEECCcCCHHHHh--hCCEEEE-ECC
Confidence 456555 55567888888777553211 2778877765545556666 5799999 554
No 141
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=92.43 E-value=0.32 Score=34.31 Aligned_cols=79 Identities=16% Similarity=0.219 Sum_probs=47.9
Q ss_pred cEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCCc
Q 037843 14 PIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGISFRTVLELGPTMP 93 (203)
Q Consensus 14 ~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~~~~~~P 93 (203)
||+|||........+.-.|+=+ |.++..+...... ........+++++..|... ......+.+.+.....|
T Consensus 1 kILvIddd~~R~~~L~~ILeFl------Ge~~~~~~~~~~~-~~~~~~~~~~~~v~~g~~~--~~~~~l~~l~~~~~~~P 71 (109)
T PF06490_consen 1 KILVIDDDAERRQRLSTILEFL------GEQCEAVSSSDWS-QADWSSPWEACAVILGSCS--KLAELLKELLKWAPHIP 71 (109)
T ss_pred CEEEECCcHHHHHhhhhhhhhc------CCCeEEecHHHHH-HhhhhcCCcEEEEEecCch--hHHHHHHHHHhhCCCCC
Confidence 6999998887788888888888 9998887543221 1122235677766555433 11122233333356799
Q ss_pred eeehhHHH
Q 037843 94 LFCMGLKC 101 (203)
Q Consensus 94 ilClG~Ql 101 (203)
+|.+|-+.
T Consensus 72 vlllg~~~ 79 (109)
T PF06490_consen 72 VLLLGEHD 79 (109)
T ss_pred EEEECCCC
Confidence 99655443
No 142
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=92.43 E-value=1.2 Score=33.25 Aligned_cols=60 Identities=13% Similarity=0.084 Sum_probs=35.8
Q ss_pred CchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHH----hc--c--CCCEEEECCCCCCCCCcchHHHHHHH
Q 037843 21 YDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAEL----KR--K--KPRGVVISPGPGAPQESGISFRTVLE 87 (203)
Q Consensus 21 ~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l----~~--~--~~dgiil~GG~~~~~~~~~~~~~i~~ 87 (203)
.+++...+.+++++. |+++..+..-..+.+++ .. . .+|.||.+||.+ +.+.+...+.+.+
T Consensus 18 ~d~n~~~l~~~l~~~------G~~v~~~~~v~Dd~~~i~~~l~~~~~~~~~DlVittGG~s-~g~~D~t~~al~~ 85 (152)
T cd00886 18 EDRSGPALVELLEEA------GHEVVAYEIVPDDKDEIREALIEWADEDGVDLILTTGGTG-LAPRDVTPEATRP 85 (152)
T ss_pred ccchHHHHHHHHHHc------CCeeeeEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcC-CCCCcCcHHHHHH
Confidence 456677888999999 88765443111122322 21 1 589999998854 4444544455555
No 143
>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=92.35 E-value=0.24 Score=38.27 Aligned_cols=44 Identities=18% Similarity=0.269 Sum_probs=33.1
Q ss_pred CCCEEEECCCCCCCC-----CcchHHHHHHHh-CCCCcee--ehhHHHHHHH
Q 037843 62 KPRGVVISPGPGAPQ-----ESGISFRTVLEL-GPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 62 ~~dgiil~GG~~~~~-----~~~~~~~~i~~~-~~~~Pil--ClG~Qlla~a 105 (203)
++|.|+|+||.+... ....+.+++++. .++++|. |-|..+|+.+
T Consensus 69 ~~D~liIpgg~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 120 (195)
T cd03138 69 APDLVIVPGLGGDPDELLLADNPALIAWLRRQHANGATVAAACTGVFLLAEA 120 (195)
T ss_pred CCCEEEECCCcCCchhhhhhccHHHHHHHHHHHHcCCEEEEecHHHHHHHHc
Confidence 689999999865432 233467778774 6778888 9999999974
No 144
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=92.12 E-value=1.5 Score=33.29 Aligned_cols=69 Identities=14% Similarity=0.190 Sum_probs=39.1
Q ss_pred CCcEEEEe-------CCchHHHHHHHHHHHhhhhhcCCceEEEEe--CCccc--HHHHhc----cCCCEEEECCCCCCCC
Q 037843 12 KNPIVVID-------NYDSFTYNLCQYMGELELELSQGYHFEVYR--NDELT--VAELKR----KKPRGVVISPGPGAPQ 76 (203)
Q Consensus 12 ~~~i~iid-------~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~--~~~~~--~~~l~~----~~~dgiil~GG~~~~~ 76 (203)
+++|.||- -.+++...+..++++. |+++..+. .|+.. .+.+.. .++|.||.+||.| +.
T Consensus 4 ~~rv~vit~~d~~~~~~d~n~~~l~~~L~~~------G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVIttGGtg-~g 76 (163)
T TIGR02667 4 PLRIAILTVSDTRTEEDDTSGQYLVERLTEA------GHRLADRAIVKDDIYQIRAQVSAWIADPDVQVILITGGTG-FT 76 (163)
T ss_pred ccEEEEEEEeCcCCccCCCcHHHHHHHHHHC------CCeEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcC-CC
Confidence 35666652 3456677888889998 88765432 23211 122211 2589999999865 33
Q ss_pred CcchHHHHHHH
Q 037843 77 ESGISFRTVLE 87 (203)
Q Consensus 77 ~~~~~~~~i~~ 87 (203)
..+...+.+.+
T Consensus 77 ~~D~t~eal~~ 87 (163)
T TIGR02667 77 GRDVTPEALEP 87 (163)
T ss_pred CCCCcHHHHHH
Confidence 34433444444
No 145
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=91.93 E-value=0.93 Score=30.92 Aligned_cols=74 Identities=16% Similarity=0.310 Sum_probs=47.3
Q ss_pred EEEEeCCchHHHHHHHHHHHhhhhhcCCc-eEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCCc
Q 037843 15 IVVIDNYDSFTYNLCQYMGELELELSQGY-HFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGISFRTVLELGPTMP 93 (203)
Q Consensus 15 i~iid~~~~~~~~l~~~l~~~~~~~~~g~-~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~~~~~~P 93 (203)
|+|+|........+.++++.. |+ .+........-...+....+|.+++.-.... .+...+.+.|+....+.|
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~------~~~~v~~~~~~~~~~~~~~~~~~d~iiid~~~~~-~~~~~~~~~i~~~~~~~~ 73 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERA------GYEEVTTASSGEEALELLKKHPPDLIIIDLELPD-GDGLELLEQIRQINPSIP 73 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHT------TEEEEEEESSHHHHHHHHHHSTESEEEEESSSSS-SBHHHHHHHHHHHTTTSE
T ss_pred cEEEECCHHHHHHHHHHHHhC------CCCEEEEECCHHHHHHHhcccCceEEEEEeeecc-cccccccccccccccccc
Confidence 689999888888899999977 88 6665432111233344457899999433221 122234566666567889
Q ss_pred ee
Q 037843 94 LF 95 (203)
Q Consensus 94 il 95 (203)
++
T Consensus 74 ii 75 (112)
T PF00072_consen 74 II 75 (112)
T ss_dssp EE
T ss_pred EE
Confidence 88
No 146
>cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=91.61 E-value=0.33 Score=36.92 Aligned_cols=44 Identities=11% Similarity=0.164 Sum_probs=33.4
Q ss_pred CCCEEEECCCCCCCC--CcchHHHHHHH-hCCCCcee--ehhHHHHHHH
Q 037843 62 KPRGVVISPGPGAPQ--ESGISFRTVLE-LGPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 62 ~~dgiil~GG~~~~~--~~~~~~~~i~~-~~~~~Pil--ClG~Qlla~a 105 (203)
.+|+||++||.+... ....+.+++++ ..++++|. |-|..+|+.+
T Consensus 62 ~~D~lvipgg~~~~~~~~~~~~~~~l~~~~~~~k~i~aic~g~~~La~a 110 (183)
T cd03139 62 DLDVLLVPGGGGTRALVNDPALLDFIRRQAARAKYVTSVCTGALLLAAA 110 (183)
T ss_pred CCCEEEECCCcchhhhccCHHHHHHHHHhcccCCEEEEEchHHHHHHhc
Confidence 689999999865432 23446788887 46788888 9999999874
No 147
>PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C ....
Probab=90.44 E-value=0.32 Score=36.52 Aligned_cols=44 Identities=20% Similarity=0.270 Sum_probs=32.0
Q ss_pred CCCEEEECCCCC--CCCCcchHHHHHHHh-CCCCcee--ehhHHHHHHH
Q 037843 62 KPRGVVISPGPG--APQESGISFRTVLEL-GPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 62 ~~dgiil~GG~~--~~~~~~~~~~~i~~~-~~~~Pil--ClG~Qlla~a 105 (203)
++|.||++||++ .......+.+++++. .++.+|. |-|..+|+.+
T Consensus 61 ~~D~lvvpg~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 109 (166)
T PF13278_consen 61 DFDILVVPGGPGFDAAAKDPALLDWLRQQHAQGTYIAAICTGALLLAEA 109 (166)
T ss_dssp CCSEEEEE-STTHHHHTT-HHHHHHHHHHHCCTSEEEEETTHHHHHHHT
T ss_pred cCCEEEeCCCCCchhcccCHHHHHHhhhhhccceEEeeeehHHHHHhhh
Confidence 689999999987 122334466777764 6778888 9999999986
No 148
>KOG2764 consensus Putative transcriptional regulator DJ-1 [General function prediction only; Defense mechanisms]
Probab=89.47 E-value=1.5 Score=35.21 Aligned_cols=39 Identities=23% Similarity=0.284 Sum_probs=28.2
Q ss_pred cCCCEEEECCC-CCCCC--CcchHHHHHHHh-CCCCcee--ehhH
Q 037843 61 KKPRGVVISPG-PGAPQ--ESGISFRTVLEL-GPTMPLF--CMGL 99 (203)
Q Consensus 61 ~~~dgiil~GG-~~~~~--~~~~~~~~i~~~-~~~~Pil--ClG~ 99 (203)
..||.|||+|| +|.-. +.....+++++. ..+++|. |-|=
T Consensus 66 ~~yDviilPGG~~g~e~L~~~~~v~~lvK~q~~~gkLIaaICaap 110 (247)
T KOG2764|consen 66 SKYDVIILPGGLPGAETLSECEKVVDLVKEQAESGKLIAAICAAP 110 (247)
T ss_pred ccccEEEecCCchhhhhhhhcHHHHHHHHHHHhcCCeEEEeecch
Confidence 58999999999 76533 344556777775 4667777 9875
No 149
>cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee
Probab=89.13 E-value=0.7 Score=35.32 Aligned_cols=44 Identities=14% Similarity=0.014 Sum_probs=32.9
Q ss_pred CCCEEEECCCCCCCC-CcchHHHHHHHh-CCCCcee--ehhHHHHHHH
Q 037843 62 KPRGVVISPGPGAPQ-ESGISFRTVLEL-GPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 62 ~~dgiil~GG~~~~~-~~~~~~~~i~~~-~~~~Pil--ClG~Qlla~a 105 (203)
++|.|||+||.+... ....+.+++++. .+++.|. |-|..+|+.+
T Consensus 64 ~~D~liipgg~~~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~La~a 111 (185)
T cd03136 64 PLDYLFVVGGLGARRAVTPALLAWLRRAARRGVALGGIDTGAFLLARA 111 (185)
T ss_pred CCCEEEEeCCCCccccCCHHHHHHHHHHHhcCCEEEEEcHHHHHHHHc
Confidence 689999999865432 233467778774 6778888 9999999974
No 150
>PRK06756 flavodoxin; Provisional
Probab=88.85 E-value=7.1 Score=28.61 Aligned_cols=78 Identities=9% Similarity=-0.007 Sum_probs=42.4
Q ss_pred CcEEEE-eCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcc-cHHHHhccCCCEEEECCCCCC-CCCcc-hHHHHHHHh
Q 037843 13 NPIVVI-DNYDSFTYNLCQYMGELELELSQGYHFEVYRNDEL-TVAELKRKKPRGVVISPGPGA-PQESG-ISFRTVLEL 88 (203)
Q Consensus 13 ~~i~ii-d~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~-~~~~l~~~~~dgiil~GG~~~-~~~~~-~~~~~i~~~ 88 (203)
++|+|| ....+++..+++.+.+... ..|+.+++.+..+. ...++. ++|+|+| |.|-. ..... .+..++..+
T Consensus 2 mkv~IiY~S~tGnTe~vA~~ia~~l~--~~g~~v~~~~~~~~~~~~~~~--~~d~vi~-gspt~~~g~~p~~~~~fl~~l 76 (148)
T PRK06756 2 SKLVMIFASMSGNTEEMADHIAGVIR--ETENEIEVIDIMDSPEASILE--QYDGIIL-GAYTWGDGDLPDDFLDFYDAM 76 (148)
T ss_pred ceEEEEEECCCchHHHHHHHHHHHHh--hcCCeEEEeehhccCCHHHHh--cCCeEEE-EeCCCCCCCCcHHHHHHHHHH
Confidence 467666 5566778877776655321 12777777654322 234554 6799998 43321 11222 244444432
Q ss_pred ----CCCCcee
Q 037843 89 ----GPTMPLF 95 (203)
Q Consensus 89 ----~~~~Pil 95 (203)
-+++|+.
T Consensus 77 ~~~~l~~k~~~ 87 (148)
T PRK06756 77 DSIDLTGKKAA 87 (148)
T ss_pred hcCCCCCCEEE
Confidence 2567776
No 151
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=88.62 E-value=2.5 Score=30.64 Aligned_cols=59 Identities=24% Similarity=0.337 Sum_probs=35.7
Q ss_pred chHHHHHHHHHHHhhhhhcCCceEEE---EeCCccc--HHHHhc--cCCCEEEECCCCCCCCCcchHHHHHHHh
Q 037843 22 DSFTYNLCQYMGELELELSQGYHFEV---YRNDELT--VAELKR--KKPRGVVISPGPGAPQESGISFRTVLEL 88 (203)
Q Consensus 22 ~~~~~~l~~~l~~~~~~~~~g~~~~v---~~~~~~~--~~~l~~--~~~dgiil~GG~~~~~~~~~~~~~i~~~ 88 (203)
+++...+.+++++. |+++.. ++ |+.. .+.+.. .++|.||.+||.+ +...+...+.++++
T Consensus 17 d~~~~~l~~~l~~~------G~~~~~~~~v~-Dd~~~I~~~l~~~~~~~dliittGG~g-~g~~D~t~~~l~~~ 82 (135)
T smart00852 17 DSNGPALAELLTEL------GIEVTRYVIVP-DDKEAIKEALREALERADLVITTGGTG-PGPDDVTPEAVAEA 82 (135)
T ss_pred cCcHHHHHHHHHHC------CCeEEEEEEeC-CCHHHHHHHHHHHHhCCCEEEEcCCCC-CCCCcCcHHHHHHH
Confidence 55667888899998 876543 33 3211 122221 2589999999976 44455555555554
No 152
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=87.79 E-value=2.5 Score=34.39 Aligned_cols=93 Identities=11% Similarity=0.121 Sum_probs=54.0
Q ss_pred cccCCCCCcEEEEeCCchH----HHHHHHHHHHhhhhhcCCc-eEEEEeCCcc----cHHHHhc-cCCCEEEECCCCCCC
Q 037843 6 KLSKNDKNPIVVIDNYDSF----TYNLCQYMGELELELSQGY-HFEVYRNDEL----TVAELKR-KKPRGVVISPGPGAP 75 (203)
Q Consensus 6 ~~~~~~~~~i~iid~~~~~----~~~l~~~l~~~~~~~~~g~-~~~v~~~~~~----~~~~l~~-~~~dgiil~GG~~~~ 75 (203)
.+..+..+||++|-..+.. .....++++.+ |+ .+.++..... +++.+.. .+.|+|+++||--..
T Consensus 22 ~lag~~~~rI~~iptAS~~~~~~~~~~~~~~~~l------G~~~v~~l~i~~r~~a~~~~~~~~l~~ad~I~~~GGnq~~ 95 (250)
T TIGR02069 22 SRAGGEDAIIVIITSASEEPREVGERYITIFSRL------GVKEVKILDVREREDASDENAIALLSNATGIFFTGGDQLR 95 (250)
T ss_pred HHhCCCCceEEEEeCCCCChHHHHHHHHHHHHHc------CCceeEEEecCChHHccCHHHHHHHhhCCEEEEeCCCHHH
Confidence 4445556899999654432 34556677777 88 4666554211 1221111 267999999985321
Q ss_pred ----CCcchHHHHHHH-hCCCCcee--ehhHHHHHH
Q 037843 76 ----QESGISFRTVLE-LGPTMPLF--CMGLKCIGE 104 (203)
Q Consensus 76 ----~~~~~~~~~i~~-~~~~~Pil--ClG~Qlla~ 104 (203)
.....+...|++ +.++.|+. --|.-+|+.
T Consensus 96 l~~~l~~t~l~~~l~~~~~~G~vi~G~SAGA~i~~~ 131 (250)
T TIGR02069 96 ITSLLGDTPLLDRLRKRVHEGIILGGTSAGAAVMSD 131 (250)
T ss_pred HHHHHcCCcHHHHHHHHHHcCCeEEEccHHHHhccc
Confidence 112224455655 56778888 777777654
No 153
>PRK03673 hypothetical protein; Provisional
Probab=86.96 E-value=4.6 Score=35.22 Aligned_cols=47 Identities=13% Similarity=0.155 Sum_probs=30.2
Q ss_pred chHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhc------cCCCEEEECCCCCC
Q 037843 22 DSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKR------KKPRGVVISPGPGA 74 (203)
Q Consensus 22 ~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~------~~~dgiil~GG~~~ 74 (203)
+++...+.+.++++ |+++.....-..+.+++.. .++|.||++||-|.
T Consensus 20 dtN~~~la~~L~~~------G~~v~~~~~v~D~~~~i~~~l~~a~~~~DlVI~tGGlGp 72 (396)
T PRK03673 20 DTNAAWLADFFFHQ------GLPLSRRNTVGDNLDALVAILRERSQHADVLIVNGGLGP 72 (396)
T ss_pred EhHHHHHHHHHHHC------CCEEEEEEEcCCCHHHHHHHHHHHhccCCEEEEcCCCCC
Confidence 45677788899998 9887543211112333321 26899999999764
No 154
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=86.87 E-value=3.4 Score=32.73 Aligned_cols=89 Identities=16% Similarity=0.151 Sum_probs=52.2
Q ss_pred cCCCCCcEEEEeCCc----hHHHHHHHHHHHhhhhhcCCce-EEEEeCCc----ccH---HHHhccCCCEEEECCCCCCC
Q 037843 8 SKNDKNPIVVIDNYD----SFTYNLCQYMGELELELSQGYH-FEVYRNDE----LTV---AELKRKKPRGVVISPGPGAP 75 (203)
Q Consensus 8 ~~~~~~~i~iid~~~----~~~~~l~~~l~~~~~~~~~g~~-~~v~~~~~----~~~---~~l~~~~~dgiil~GG~~~~ 75 (203)
..+..++|++|...+ .....+.++++++ |+. +.++.... .++ +.+. +.|+|+++||.-..
T Consensus 25 ag~~~~~i~~iptA~~~~~~~~~~~~~~~~~l------G~~~v~~~~~~~~~~a~~~~~~~~l~--~ad~I~~~GG~~~~ 96 (217)
T cd03145 25 AGGAGARIVVIPAASEEPAEVGEEYRDVFERL------GAREVEVLVIDSREAANDPEVVARLR--DADGIFFTGGDQLR 96 (217)
T ss_pred cCCCCCcEEEEeCCCcChhHHHHHHHHHHHHc------CCceeEEeccCChHHcCCHHHHHHHH--hCCEEEEeCCcHHH
Confidence 334568999997764 3345577778888 875 44443321 122 2233 67999999984321
Q ss_pred C----CcchHHHHHHH-hCCCCcee--ehhHHHHHH
Q 037843 76 Q----ESGISFRTVLE-LGPTMPLF--CMGLKCIGE 104 (203)
Q Consensus 76 ~----~~~~~~~~i~~-~~~~~Pil--ClG~Qlla~ 104 (203)
. ....+.+.|++ +.++.|+. --|.-+++.
T Consensus 97 ~~~~l~~t~l~~~l~~~~~~G~v~~G~SAGA~i~~~ 132 (217)
T cd03145 97 ITSALGGTPLLDALRKVYRGGVVIGGTSAGAAVMSD 132 (217)
T ss_pred HHHHHcCChHHHHHHHHHHcCCEEEEccHHHHhhhh
Confidence 1 11223455665 56778888 556655554
No 155
>PRK14690 molybdopterin biosynthesis protein MoeA; Provisional
Probab=86.53 E-value=4.8 Score=35.34 Aligned_cols=69 Identities=16% Similarity=0.094 Sum_probs=40.8
Q ss_pred CCcEEEEeCC----------------chHHHHHHHHHHHhhhhhcCCceEEEEe--CCccc--HHHHhc--cCCCEEEEC
Q 037843 12 KNPIVVIDNY----------------DSFTYNLCQYMGELELELSQGYHFEVYR--NDELT--VAELKR--KKPRGVVIS 69 (203)
Q Consensus 12 ~~~i~iid~~----------------~~~~~~l~~~l~~~~~~~~~g~~~~v~~--~~~~~--~~~l~~--~~~dgiil~ 69 (203)
++||.||..+ +++...+...+++. |+.+..+. .|+.. .+.+.. .++|.||++
T Consensus 193 ~prV~IisTGdEl~~~g~~~~~g~i~dsN~~~L~a~l~~~------G~~v~~~~~v~Dd~~~i~~~l~~a~~~~DlIItT 266 (419)
T PRK14690 193 PLRVAVLSTGDELVEPGALAEVGQIYDANRPMLLALARRW------GHAPVDLGRVGDDRAALAARLDRAAAEADVILTS 266 (419)
T ss_pred CCEEEEEEccccccCCCCCCCCCeEEeCHHHHHHHHHHHC------CCEEEEEeeeCCCHHHHHHHHHHhCccCCEEEEc
Confidence 5788888443 34667788889998 88775432 22211 122222 268999999
Q ss_pred CCCCCCCCcchHHHHHHH
Q 037843 70 PGPGAPQESGISFRTVLE 87 (203)
Q Consensus 70 GG~~~~~~~~~~~~~i~~ 87 (203)
||.+ ..+.+.+.+.+.+
T Consensus 267 GG~S-~G~~D~v~~~l~~ 283 (419)
T PRK14690 267 GGAS-AGDEDHVSALLRE 283 (419)
T ss_pred CCcc-CCCcchHHHHHHh
Confidence 8854 4555544444443
No 156
>COG0303 MoeA Molybdopterin biosynthesis enzyme [Coenzyme metabolism]
Probab=86.27 E-value=2.5 Score=36.92 Aligned_cols=68 Identities=15% Similarity=0.117 Sum_probs=43.5
Q ss_pred CCcEEEEeCC----------------chHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHH----hc--cCCCEEEEC
Q 037843 12 KNPIVVIDNY----------------DSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAEL----KR--KKPRGVVIS 69 (203)
Q Consensus 12 ~~~i~iid~~----------------~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l----~~--~~~dgiil~ 69 (203)
++||+||..+ +++...+..+++++ |+++..+..-..+++++ .. ..+|.||.+
T Consensus 176 kprV~IisTGdELv~~~~~l~~gqI~dsN~~~l~a~l~~~------G~e~~~~giv~Dd~~~l~~~i~~a~~~~DviIts 249 (404)
T COG0303 176 KPRVAIISTGDELVEPGQPLEPGQIYDSNSYMLAALLERA------GGEVVDLGIVPDDPEALREAIEKALSEADVIITS 249 (404)
T ss_pred CCEEEEEecCccccCCCCCCCCCeEEecCHHHHHHHHHHc------CCceeeccccCCCHHHHHHHHHHhhhcCCEEEEe
Confidence 5889988433 45677888999999 88665432111122222 21 258999999
Q ss_pred CCCCCCCCcchHHHHHH
Q 037843 70 PGPGAPQESGISFRTVL 86 (203)
Q Consensus 70 GG~~~~~~~~~~~~~i~ 86 (203)
||. ++.+.+.+.+.++
T Consensus 250 GG~-SvG~~D~v~~~l~ 265 (404)
T COG0303 250 GGV-SVGDADYVKAALE 265 (404)
T ss_pred CCc-cCcchHhHHHHHH
Confidence 986 4566666666777
No 157
>PRK14497 putative molybdopterin biosynthesis protein MoeA/unknown domain fusion protein; Provisional
Probab=85.22 E-value=5.8 Score=36.05 Aligned_cols=69 Identities=17% Similarity=0.159 Sum_probs=39.8
Q ss_pred CCcEEEEeCC----------------chHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHh----c--cCCCEEEEC
Q 037843 12 KNPIVVIDNY----------------DSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELK----R--KKPRGVVIS 69 (203)
Q Consensus 12 ~~~i~iid~~----------------~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~----~--~~~dgiil~ 69 (203)
++||+||..+ +++...+..++++. |+++..+..-..+.+++. . .++|.||++
T Consensus 179 rprV~IisTGdELv~pg~~l~~G~I~dsNs~~L~a~l~~~------G~~v~~~~iv~Dd~e~i~~~l~~al~~~DlVItt 252 (546)
T PRK14497 179 KPKIYLIATGDELVEPGNSLSPGKIYESNLHYLYSKLKSE------GYKIVGLSLLSDDKESIKNEIKRAISVADVLILT 252 (546)
T ss_pred CCEEEEEEcCCcccCCCCCCCCCcEEEhHHHHHHHHHHHC------CCEEEEEEEeCCCHHHHHHHHHHhhhcCCEEEEc
Confidence 5788888433 24566788888888 887654321111233322 1 268999999
Q ss_pred CCCCCCCCcchHHHHHHH
Q 037843 70 PGPGAPQESGISFRTVLE 87 (203)
Q Consensus 70 GG~~~~~~~~~~~~~i~~ 87 (203)
||.+ ....+...+.+.+
T Consensus 253 GGtS-~G~~D~~~~al~~ 269 (546)
T PRK14497 253 GGTS-AGEKDFVHQAIRE 269 (546)
T ss_pred CCcc-CCCCccHHHHHhh
Confidence 9864 4444444444443
No 158
>PRK09393 ftrA transcriptional activator FtrA; Provisional
Probab=85.16 E-value=1.7 Score=36.35 Aligned_cols=44 Identities=16% Similarity=0.209 Sum_probs=31.9
Q ss_pred CCCEEEECCCCCCCC-CcchHHHHHHHh-CCCCcee--ehhHHHHHHH
Q 037843 62 KPRGVVISPGPGAPQ-ESGISFRTVLEL-GPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 62 ~~dgiil~GG~~~~~-~~~~~~~~i~~~-~~~~Pil--ClG~Qlla~a 105 (203)
++|.||++||.+... ....+.++|++. .++++|. |-|-.+|+.+
T Consensus 75 ~~D~livpGg~~~~~~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~a 122 (322)
T PRK09393 75 RADTIVIPGWRGPDAPVPEPLLEALRAAHARGARLCSICSGVFVLAAA 122 (322)
T ss_pred CCCEEEECCCCcccccCCHHHHHHHHHHHHcCCEEEEEcHHHHHHHhc
Confidence 689999988865322 233467778774 5667887 9999999885
No 159
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=84.97 E-value=13 Score=28.96 Aligned_cols=77 Identities=22% Similarity=0.276 Sum_probs=44.9
Q ss_pred CCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhC
Q 037843 11 DKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELG 89 (203)
Q Consensus 11 ~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~ 89 (203)
...+|+|++........+...++.. |..+........-.+.+....+|.||+--. .+...+ .+...++...
T Consensus 4 ~~~~iLiv~d~~~~~~~l~~~L~~~------g~~v~~~~~~~~~~~~~~~~~~dlvild~~--l~~~~g~~~~~~lr~~~ 75 (239)
T PRK09468 4 ENYKILVVDDDMRLRALLERYLTEQ------GFQVRSAANAEQMDRLLTRESFHLMVLDLM--LPGEDGLSICRRLRSQN 75 (239)
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHC------CCEEEEECCHHHHHHHHhcCCCCEEEEeCC--CCCCCHHHHHHHHHhcC
Confidence 3578999998877778888888887 888765432111112223336898888322 122222 2344455433
Q ss_pred CCCcee
Q 037843 90 PTMPLF 95 (203)
Q Consensus 90 ~~~Pil 95 (203)
...|++
T Consensus 76 ~~~pii 81 (239)
T PRK09468 76 NPTPII 81 (239)
T ss_pred CCCCEE
Confidence 568888
No 160
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=84.65 E-value=5 Score=35.86 Aligned_cols=61 Identities=11% Similarity=0.214 Sum_probs=39.9
Q ss_pred CCCcEEEE-eCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhc--cCCCEEEECCCC
Q 037843 11 DKNPIVVI-DNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKR--KKPRGVVISPGP 72 (203)
Q Consensus 11 ~~~~i~ii-d~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~--~~~dgiil~GG~ 72 (203)
.+.+|+|+ ....+++..+++++.+-..+.+.|+.+.+.+..+.+.+++.. .++|+||| |.|
T Consensus 250 ~~~kv~IvY~S~~GnTe~mA~~ia~gl~~~g~gv~v~~~~v~~~~~~~i~~~~~~ad~vil-Gsp 313 (479)
T PRK05452 250 QEDRITIFYDTMSNNTRMMADAIAQGIAEVDPRVAVKIFNVARSDKNEILTNVFRSKGVLV-GSS 313 (479)
T ss_pred CcCcEEEEEECCccHHHHHHHHHHHHHHhhCCCceEEEEECCCCCHHHHHhHHhhCCEEEE-ECC
Confidence 35667666 555677888888776643332336788877766566767653 25799999 554
No 161
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=84.46 E-value=3.7 Score=30.47 Aligned_cols=79 Identities=14% Similarity=0.084 Sum_probs=48.5
Q ss_pred CCCcEEEE----eCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhc----cCCCEEEECCCCCCC-CCcchH
Q 037843 11 DKNPIVVI----DNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKR----KKPRGVVISPGPGAP-QESGIS 81 (203)
Q Consensus 11 ~~~~i~ii----d~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~----~~~dgiil~GG~~~~-~~~~~~ 81 (203)
.++||++. |.++--...+.++|++. |+++...... .+++++.. .+.|.|++|+=.+.- .....+
T Consensus 11 ~rprvlvak~GlDgHd~gakvia~~l~d~------GfeVi~~g~~-~tp~e~v~aA~~~dv~vIgvSsl~g~h~~l~~~l 83 (143)
T COG2185 11 ARPRVLVAKLGLDGHDRGAKVIARALADA------GFEVINLGLF-QTPEEAVRAAVEEDVDVIGVSSLDGGHLTLVPGL 83 (143)
T ss_pred CCceEEEeccCccccccchHHHHHHHHhC------CceEEecCCc-CCHHHHHHHHHhcCCCEEEEEeccchHHHHHHHH
Confidence 46888887 55544456688899998 9998776543 45555432 378999997754432 123345
Q ss_pred HHHHHHhC-CCCceee
Q 037843 82 FRTVLELG-PTMPLFC 96 (203)
Q Consensus 82 ~~~i~~~~-~~~PilC 96 (203)
.+.+++.. ..+.++|
T Consensus 84 ve~lre~G~~~i~v~~ 99 (143)
T COG2185 84 VEALREAGVEDILVVV 99 (143)
T ss_pred HHHHHHhCCcceEEee
Confidence 56666642 3454334
No 162
>PRK10680 molybdopterin biosynthesis protein MoeA; Provisional
Probab=84.43 E-value=5.3 Score=34.97 Aligned_cols=67 Identities=13% Similarity=0.060 Sum_probs=38.8
Q ss_pred CCcEEEEeCC----------------chHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHH----hc--cCCCEEEEC
Q 037843 12 KNPIVVIDNY----------------DSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAEL----KR--KKPRGVVIS 69 (203)
Q Consensus 12 ~~~i~iid~~----------------~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l----~~--~~~dgiil~ 69 (203)
++||.||-.+ +++...+..++++. |+.+..+..-..+.+++ .. .++|.||++
T Consensus 177 ~prV~iistGdEl~~~~~~~~~g~i~dsn~~~l~a~l~~~------G~~~~~~~~v~Dd~~~i~~~l~~a~~~~DlvItt 250 (411)
T PRK10680 177 KVRVALFSTGDELQLPGQPLGDGQIYDTNRLAVHLMLEQL------GCEVINLGIIRDDPHALRAAFIEADSQADVVISS 250 (411)
T ss_pred CCEEEEEccCCeEeCCCCCCCCCEEEEhHHHHHHHHHHHC------CCEEEEEEEeCCCHHHHHHHHHHhccCCCEEEEc
Confidence 5788888432 35566788889998 88765432111122222 22 268999999
Q ss_pred CCCCCCCCcchHHHHH
Q 037843 70 PGPGAPQESGISFRTV 85 (203)
Q Consensus 70 GG~~~~~~~~~~~~~i 85 (203)
||.+ ..+.+...+.+
T Consensus 251 GG~S-~G~~D~~~~al 265 (411)
T PRK10680 251 GGVS-VGEADYTKTIL 265 (411)
T ss_pred CCCC-CCCcchHHHHH
Confidence 9864 33344333333
No 163
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=84.28 E-value=6.4 Score=28.50 Aligned_cols=60 Identities=17% Similarity=0.142 Sum_probs=35.3
Q ss_pred chHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHH----Hhc--cCCCEEEECCCCCCCCCcchHHHHHHHh
Q 037843 22 DSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAE----LKR--KKPRGVVISPGPGAPQESGISFRTVLEL 88 (203)
Q Consensus 22 ~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~----l~~--~~~dgiil~GG~~~~~~~~~~~~~i~~~ 88 (203)
+++...+.+++++. |.++.....-..+.++ +.. .++|.||.+||.| +...+...+.++++
T Consensus 18 d~n~~~l~~~l~~~------G~~v~~~~~v~Dd~~~i~~~i~~~~~~~DlvittGG~g-~g~~D~t~~ai~~~ 83 (133)
T cd00758 18 DTNGPALEALLEDL------GCEVIYAGVVPDDADSIRAALIEASREADLVLTTGGTG-VGRRDVTPEALAEL 83 (133)
T ss_pred EchHHHHHHHHHHC------CCEEEEeeecCCCHHHHHHHHHHHHhcCCEEEECCCCC-CCCCcchHHHHHHh
Confidence 45667788889888 8877544211112222 221 1589999999865 34444445555553
No 164
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=84.18 E-value=5.9 Score=27.57 Aligned_cols=56 Identities=18% Similarity=0.162 Sum_probs=34.5
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISP 70 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~G 70 (203)
|.+|+++-+.+--++.+++-.++. +.+.|.++.+--+.+....+..+ ++|.++|.|
T Consensus 1 Mk~IlLvC~aGmSTSlLV~Km~~a--A~~kg~~~~I~A~s~~e~~~~~~-~~DvvLlGP 56 (102)
T COG1440 1 MKKILLVCAAGMSTSLLVTKMKKA--AESKGKDVTIEAYSETELSEYID-NADVVLLGP 56 (102)
T ss_pred CceEEEEecCCCcHHHHHHHHHHH--HHhCCCceEEEEechhHHHHhhh-cCCEEEECh
Confidence 467888876655577788777665 23448888775443222333222 689999943
No 165
>PRK01215 competence damage-inducible protein A; Provisional
Probab=84.16 E-value=6 Score=32.47 Aligned_cols=69 Identities=17% Similarity=0.198 Sum_probs=38.5
Q ss_pred CCcEEEEeCC---------chHHHHHHHHHHHhhhhhcCCceEEEEe--CCccc--HHHHhc--cCCCEEEECCCCCCCC
Q 037843 12 KNPIVVIDNY---------DSFTYNLCQYMGELELELSQGYHFEVYR--NDELT--VAELKR--KKPRGVVISPGPGAPQ 76 (203)
Q Consensus 12 ~~~i~iid~~---------~~~~~~l~~~l~~~~~~~~~g~~~~v~~--~~~~~--~~~l~~--~~~dgiil~GG~~~~~ 76 (203)
++++.||--+ +.+...+.+.+++. |+++.... .|+.. .+.+.. .+.|.||++||-| +.
T Consensus 3 ~~~v~Ii~~GdEll~G~i~dtn~~~l~~~L~~~------G~~v~~~~~v~Dd~~~I~~~l~~a~~~~DlVIttGG~g-~t 75 (264)
T PRK01215 3 KWFAWIITIGNELLIGRTVNTNASWIARRLTYL------GYTVRRITVVMDDIEEIVSAFREAIDRADVVVSTGGLG-PT 75 (264)
T ss_pred CCEEEEEEEChhccCCeEEEhhHHHHHHHHHHC------CCeEEEEEEeCCCHHHHHHHHHHHhcCCCEEEEeCCCc-CC
Confidence 4677776333 34566788888888 88875432 23211 112211 2579999999865 33
Q ss_pred CcchHHHHHHH
Q 037843 77 ESGISFRTVLE 87 (203)
Q Consensus 77 ~~~~~~~~i~~ 87 (203)
..+...+.+.+
T Consensus 76 ~dD~t~eaia~ 86 (264)
T PRK01215 76 YDDKTNEGFAK 86 (264)
T ss_pred hhhhHHHHHHH
Confidence 33333344444
No 166
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=83.72 E-value=5.5 Score=30.99 Aligned_cols=37 Identities=14% Similarity=0.120 Sum_probs=22.2
Q ss_pred CcEEEEeC-CchHHHHHHHHHHHhhhhhcCCceEEEEeC
Q 037843 13 NPIVVIDN-YDSFTYNLCQYMGELELELSQGYHFEVYRN 50 (203)
Q Consensus 13 ~~i~iid~-~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~ 50 (203)
++|+||-+ ..+.+..+++++.+...+ ..|+++++++.
T Consensus 2 ~kilIvy~S~~G~T~~lA~~ia~g~~~-~~G~ev~~~~l 39 (200)
T PRK03767 2 AKVLVLYYSMYGHIETMAEAVAEGARE-VAGAEVTIKRV 39 (200)
T ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHhh-cCCcEEEEEec
Confidence 47888743 245677777766554221 13888887754
No 167
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=83.62 E-value=5.4 Score=29.21 Aligned_cols=60 Identities=22% Similarity=0.278 Sum_probs=36.2
Q ss_pred chHHHHHHHHHHHhhhhhcCCceEEE---EeCCcccH-HHHhc--cCCCEEEECCCCCCCCCcchHHHHHHHh
Q 037843 22 DSFTYNLCQYMGELELELSQGYHFEV---YRNDELTV-AELKR--KKPRGVVISPGPGAPQESGISFRTVLEL 88 (203)
Q Consensus 22 ~~~~~~l~~~l~~~~~~~~~g~~~~v---~~~~~~~~-~~l~~--~~~dgiil~GG~~~~~~~~~~~~~i~~~ 88 (203)
+++...+.+++++. |+++.. ++.+.... +.+.. .+.|.||.+||.|. ...+...+.+.++
T Consensus 16 d~n~~~l~~~l~~~------G~~v~~~~~v~Dd~~~i~~~l~~~~~~~D~VittGG~g~-~~~D~t~~a~~~~ 81 (144)
T PF00994_consen 16 DSNGPFLAALLEEL------GIEVIRYGIVPDDPDAIKEALRRALDRADLVITTGGTGP-GPDDVTPEALAEA 81 (144)
T ss_dssp BHHHHHHHHHHHHT------TEEEEEEEEEESSHHHHHHHHHHHHHTTSEEEEESSSSS-STTCHHHHHHHHH
T ss_pred EhHHHHHHHHHHHc------CCeeeEEEEECCCHHHHHHHHHhhhccCCEEEEcCCcCc-ccCCcccHHHHHh
Confidence 56777888999998 887753 33321111 12221 25799999999763 4444445555553
No 168
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=83.52 E-value=5.9 Score=29.15 Aligned_cols=61 Identities=20% Similarity=0.237 Sum_probs=36.6
Q ss_pred chHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHH----hc--cCCCEEEECCCCCCCCCcchHHHHHHHhC
Q 037843 22 DSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAEL----KR--KKPRGVVISPGPGAPQESGISFRTVLELG 89 (203)
Q Consensus 22 ~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l----~~--~~~dgiil~GG~~~~~~~~~~~~~i~~~~ 89 (203)
+++...+.+.+++. |+++..+..-..+.+++ .. .++|.||.+||.+ +...+...+.+.++.
T Consensus 26 d~n~~~l~~~l~~~------G~~v~~~~~v~Dd~~~i~~~l~~~~~~~DliIttGG~g-~g~~D~t~~ai~~~g 92 (144)
T TIGR00177 26 DSNGPLLAALLEEA------GFNVSRLGIVPDDPEEIREILRKAVDEADVVLTTGGTG-VGPRDVTPEALEELG 92 (144)
T ss_pred eCcHHHHHHHHHHC------CCeEEEEeecCCCHHHHHHHHHHHHhCCCEEEECCCCC-CCCCccHHHHHHHhC
Confidence 34566788889888 88876443111122222 21 2689999999865 344555556666543
No 169
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=83.29 E-value=5.6 Score=34.47 Aligned_cols=61 Identities=10% Similarity=0.208 Sum_probs=39.2
Q ss_pred CCCcEEEE-eCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhc--cCCCEEEECCCC
Q 037843 11 DKNPIVVI-DNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKR--KKPRGVVISPGP 72 (203)
Q Consensus 11 ~~~~i~ii-d~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~--~~~dgiil~GG~ 72 (203)
.+.+|+|+ ....+++..+++++.+-..+...|+++.+++..+.+.+++.. .++|+||| |+|
T Consensus 246 ~~~kv~IvY~S~~GnTe~mA~~ia~g~~~~~~g~~v~~~~~~~~~~~~i~~~~~~~d~ii~-Gsp 309 (394)
T PRK11921 246 QENQVTILYDTMWNSTRRMAEAIAEGIKKANKDVTVKLYNSAKSDKNDIITEVFKSKAILV-GSS 309 (394)
T ss_pred CcCcEEEEEECCchHHHHHHHHHHHHHhhcCCCCeEEEEECCCCCHHHHHHHHHhCCEEEE-ECC
Confidence 35667666 555677888888776542211347888887765556666542 25899999 544
No 170
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=83.27 E-value=2 Score=28.66 Aligned_cols=47 Identities=19% Similarity=0.283 Sum_probs=32.3
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGA 74 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~ 74 (203)
|+||+|=+. ..++.++|++. |+.+..+... .++. .+|++|++|-..+
T Consensus 1 MkkIAVE~~----Ls~v~~~L~~~------GyeVv~l~~~----~~~~--~~daiVvtG~~~n 47 (80)
T PF03698_consen 1 MKKIAVEEG----LSNVKEALREK------GYEVVDLENE----QDLQ--NVDAIVVTGQDTN 47 (80)
T ss_pred CCeEEecCC----chHHHHHHHHC------CCEEEecCCc----cccC--CcCEEEEECCCcc
Confidence 466776554 44788899998 9988665421 2233 6899999986543
No 171
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=83.23 E-value=9.4 Score=31.20 Aligned_cols=50 Identities=16% Similarity=0.199 Sum_probs=32.3
Q ss_pred chHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHh------ccCCCEEEECCCCCCCCC
Q 037843 22 DSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELK------RKKPRGVVISPGPGAPQE 77 (203)
Q Consensus 22 ~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~------~~~~dgiil~GG~~~~~~ 77 (203)
+++..-|.+.|.+. |+++..+..-..++++|. ..++|-||+|||-|-..|
T Consensus 20 dtNa~~la~~L~~~------G~~v~~~~~VgD~~~~I~~~l~~a~~r~D~vI~tGGLGPT~D 75 (255)
T COG1058 20 DTNAAFLADELTEL------GVDLARITTVGDNPDRIVEALREASERADVVITTGGLGPTHD 75 (255)
T ss_pred cchHHHHHHHHHhc------CceEEEEEecCCCHHHHHHHHHHHHhCCCEEEECCCcCCCcc
Confidence 45567788999998 998765432111233332 126999999999885443
No 172
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=82.41 E-value=9.5 Score=29.05 Aligned_cols=59 Identities=22% Similarity=0.339 Sum_probs=34.6
Q ss_pred chHHHHHHHHHHHhhhhhcCCceEEEEe--CCccc--HHHHhc--cCCCEEEECCCCCCCCCcchHHHHHHH
Q 037843 22 DSFTYNLCQYMGELELELSQGYHFEVYR--NDELT--VAELKR--KKPRGVVISPGPGAPQESGISFRTVLE 87 (203)
Q Consensus 22 ~~~~~~l~~~l~~~~~~~~~g~~~~v~~--~~~~~--~~~l~~--~~~dgiil~GG~~~~~~~~~~~~~i~~ 87 (203)
+++...+.+++++. |+.+..+. .|+.. .+.+.. ..+|.||.+||.| +...+...+.+.+
T Consensus 18 d~n~~~l~~~L~~~------G~~v~~~~~v~Dd~~~I~~~l~~~~~~~dlVIttGG~G-~t~~D~t~ea~~~ 82 (170)
T cd00885 18 DTNAAFLAKELAEL------GIEVYRVTVVGDDEDRIAEALRRASERADLVITTGGLG-PTHDDLTREAVAK 82 (170)
T ss_pred EhHHHHHHHHHHHC------CCEEEEEEEeCCCHHHHHHHHHHHHhCCCEEEECCCCC-CCCCChHHHHHHH
Confidence 45667788899998 88765332 23211 122221 2689999999865 3444444455554
No 173
>PRK09267 flavodoxin FldA; Validated
Probab=81.86 E-value=17 Score=27.17 Aligned_cols=51 Identities=6% Similarity=-0.008 Sum_probs=31.4
Q ss_pred CcEEEE-eCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEEC
Q 037843 13 NPIVVI-DNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVIS 69 (203)
Q Consensus 13 ~~i~ii-d~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~ 69 (203)
++|+|+ ....+++..+++.+.+... +..+.+++..+.+..++. ++|.|||.
T Consensus 2 mki~IiY~S~tGnT~~vA~~Ia~~l~----~~~~~~~~~~~~~~~~l~--~~d~vi~g 53 (169)
T PRK09267 2 AKIGIFFGSDTGNTEDIAKMIQKKLG----KDVADVVDIAKASKEDFE--AYDLLILG 53 (169)
T ss_pred CeEEEEEECCCChHHHHHHHHHHHhC----CCceEEEEhhhCCHhhHh--hCCEEEEE
Confidence 367666 5556778888887766421 224555554434445555 57999983
No 174
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=81.66 E-value=2.4 Score=31.61 Aligned_cols=65 Identities=8% Similarity=0.092 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhc--cCCCEEEECCCCCCCC----CcchHHHHHHH-hCCCCcee
Q 037843 25 TYNLCQYMGELELELSQGYHFEVYRNDELTVAELKR--KKPRGVVISPGPGAPQ----ESGISFRTVLE-LGPTMPLF 95 (203)
Q Consensus 25 ~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~--~~~dgiil~GG~~~~~----~~~~~~~~i~~-~~~~~Pil 95 (203)
...+.++|+++ |+++..++....+.+++.. .+.|+|+|+||--... ....+.+.|++ +.++.|+.
T Consensus 2 ~~~~~~~f~~~------g~~v~~l~~~~~~~~~~~~~i~~ad~I~~~GG~~~~l~~~l~~t~l~~~i~~~~~~G~vi~ 73 (154)
T PF03575_consen 2 VEKFRKAFRKL------GFEVDQLDLSDRNDADILEAIREADAIFLGGGDTFRLLRQLKETGLDEAIREAYRKGGVII 73 (154)
T ss_dssp HHHHHHHHHHC------T-EEEECCCTSCGHHHHHHHHHHSSEEEE--S-HHHHHHHHHHTTHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHC------CCEEEEEeccCCChHHHHHHHHhCCEEEECCCCHHHHHHHHHhCCHHHHHHHHHHCCCEEE
Confidence 34567788888 9998887754333333322 1679999999832110 01123556666 45667777
No 175
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=81.18 E-value=6.7 Score=31.21 Aligned_cols=77 Identities=12% Similarity=0.128 Sum_probs=49.5
Q ss_pred CCcEEEEeCCc------hHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhc--cCCCEEEECCCCCCCCC-----c
Q 037843 12 KNPIVVIDNYD------SFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKR--KKPRGVVISPGPGAPQE-----S 78 (203)
Q Consensus 12 ~~~i~iid~~~------~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~--~~~dgiil~GG~~~~~~-----~ 78 (203)
.++|+.|-..+ -|..-..++|+++ |+.+.-++....+.+++++ .+.|.|.++||- ...- +
T Consensus 32 ~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~l------g~~v~~L~l~~~~~~~Ie~~l~~~d~IyVgGGN-TF~LL~~lke 104 (224)
T COG3340 32 RKTIAFIPTASVDSEDDFYVEKVRNALAKL------GLEVSELHLSKPPLAAIENKLMKADIIYVGGGN-TFNLLQELKE 104 (224)
T ss_pred CceEEEEecCccccchHHHHHHHHHHHHHc------CCeeeeeeccCCCHHHHHHhhhhccEEEECCch-HHHHHHHHHH
Confidence 46899993322 2345566788888 9999887765566777774 257999997773 1110 1
Q ss_pred chHHHHHHH-hCCCCcee
Q 037843 79 GISFRTVLE-LGPTMPLF 95 (203)
Q Consensus 79 ~~~~~~i~~-~~~~~Pil 95 (203)
-.+.+.|++ ..+++|.+
T Consensus 105 ~gld~iIr~~vk~G~~Yi 122 (224)
T COG3340 105 TGLDDIIRERVKAGTPYI 122 (224)
T ss_pred hCcHHHHHHHHHcCCceE
Confidence 113455665 67888888
No 176
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=81.15 E-value=7.9 Score=27.21 Aligned_cols=67 Identities=12% Similarity=0.131 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHh----ccCCCEEEECCCCCCCC-CcchHHHHHHHhCC-CCceeehh
Q 037843 25 TYNLCQYMGELELELSQGYHFEVYRNDELTVAELK----RKKPRGVVISPGPGAPQ-ESGISFRTVLELGP-TMPLFCMG 98 (203)
Q Consensus 25 ~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~----~~~~dgiil~GG~~~~~-~~~~~~~~i~~~~~-~~PilClG 98 (203)
...+..+|+.. |+++..+..+ .+.+++. ..++|.|.||....... ....+.+.+++... +++|++-|
T Consensus 16 ~~~~~~~l~~~------G~~V~~lg~~-~~~~~l~~~~~~~~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vGG 88 (119)
T cd02067 16 KNIVARALRDA------GFEVIDLGVD-VPPEEIVEAAKEEDADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVGG 88 (119)
T ss_pred HHHHHHHHHHC------CCEEEECCCC-CCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEEEEC
Confidence 34566788887 9998665443 4554543 35899999977633221 12234455555444 66776433
No 177
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=81.06 E-value=15 Score=25.01 Aligned_cols=83 Identities=14% Similarity=0.185 Sum_probs=48.9
Q ss_pred cEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEE--e-CCcccHHHHhc--cCCCEEEECCCCCCCCCcchHHHHHHHh
Q 037843 14 PIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVY--R-NDELTVAELKR--KKPRGVVISPGPGAPQESGISFRTVLEL 88 (203)
Q Consensus 14 ~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~--~-~~~~~~~~l~~--~~~dgiil~GG~~~~~~~~~~~~~i~~~ 88 (203)
+|+||-........+.+.+++. |...... . ........+.. .+.|.||+.=+.-+ -.....+++.
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~------G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vs----H~~~~~vk~~ 70 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKY------GGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVS----HNAMWKVKKA 70 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHc------CCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcC----hHHHHHHHHH
Confidence 4788876566778888899898 9988777 1 11111112332 15699998443221 1222333332
Q ss_pred --CCCCcee-e--hhHHHHHHHh
Q 037843 89 --GPTMPLF-C--MGLKCIGEAL 106 (203)
Q Consensus 89 --~~~~Pil-C--lG~Qlla~a~ 106 (203)
..++|++ | .|..-|..++
T Consensus 71 akk~~ip~~~~~~~~~~~l~~~l 93 (97)
T PF10087_consen 71 AKKYGIPIIYSRSRGVSSLERAL 93 (97)
T ss_pred HHHcCCcEEEECCCCHHHHHHHH
Confidence 4679999 5 5777666554
No 178
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=80.69 E-value=16 Score=30.56 Aligned_cols=75 Identities=13% Similarity=0.169 Sum_probs=42.6
Q ss_pred cCCCCCcEEEEeCCch-H----HHHHHHHHHHhhhhhcCCceEEEEeCCcc---------------cHHHHhccCCCEEE
Q 037843 8 SKNDKNPIVVIDNYDS-F----TYNLCQYMGELELELSQGYHFEVYRNDEL---------------TVAELKRKKPRGVV 67 (203)
Q Consensus 8 ~~~~~~~i~iid~~~~-~----~~~l~~~l~~~~~~~~~g~~~~v~~~~~~---------------~~~~l~~~~~dgii 67 (203)
|++.+++|+|+-+... . ...+.++|++. |+.+.+...... +..++.. .+|.+|
T Consensus 1 ~~~~~~~i~ii~~~~~~~~~~~~~~l~~~L~~~------g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~D~vi 73 (296)
T PRK04539 1 MNSPFHNIGIVTRPNTPDIQDTAHTLITFLKQH------GFTVYLDEVGIKEGCIYTQDTVGCHIVNKTELGQ-YCDLVA 73 (296)
T ss_pred CCCCCCEEEEEecCCCHHHHHHHHHHHHHHHHC------CCEEEEecccccccchhccccccccccchhhcCc-CCCEEE
Confidence 5566778988855432 1 23455566666 888766421100 1122221 479999
Q ss_pred ECCCCCCCCCcchHHHHHHHh-CCCCcee
Q 037843 68 ISPGPGAPQESGISFRTVLEL-GPTMPLF 95 (203)
Q Consensus 68 l~GG~~~~~~~~~~~~~i~~~-~~~~Pil 95 (203)
..||.|. +....+.+ ..++|||
T Consensus 74 ~lGGDGT------~L~aa~~~~~~~~Pil 96 (296)
T PRK04539 74 VLGGDGT------FLSVAREIAPRAVPII 96 (296)
T ss_pred EECCcHH------HHHHHHHhcccCCCEE
Confidence 9999653 34444543 4578888
No 179
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=80.56 E-value=16 Score=30.02 Aligned_cols=53 Identities=19% Similarity=0.051 Sum_probs=34.9
Q ss_pred CCCcEEEEeCCch--------HHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEEC
Q 037843 11 DKNPIVVIDNYDS--------FTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVIS 69 (203)
Q Consensus 11 ~~~~i~iid~~~~--------~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~ 69 (203)
|+++|+|+-.+.+ -...+.++|++. |.++.++.++......+...++|.|+..
T Consensus 3 ~~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~------g~~v~~i~~~~~~~~~~~~~~~D~v~~~ 63 (304)
T PRK01372 3 MFGKVAVLMGGTSAEREVSLNSGAAVLAALREA------GYDAHPIDPGEDIAAQLKELGFDRVFNA 63 (304)
T ss_pred CCcEEEEEeCCCCCCceEeHHhHHHHHHHHHHC------CCEEEEEecCcchHHHhccCCCCEEEEe
Confidence 4568998853332 135677888888 9999888765333333434478998875
No 180
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=80.50 E-value=12 Score=29.30 Aligned_cols=67 Identities=16% Similarity=0.176 Sum_probs=36.8
Q ss_pred chHHHHHHHHHHHhhhhhcCCce---E--EEEeCCccc-HHHHhc----cCCCEEEECCCCCCCCCcchHHHHHHH-hCC
Q 037843 22 DSFTYNLCQYMGELELELSQGYH---F--EVYRNDELT-VAELKR----KKPRGVVISPGPGAPQESGISFRTVLE-LGP 90 (203)
Q Consensus 22 ~~~~~~l~~~l~~~~~~~~~g~~---~--~v~~~~~~~-~~~l~~----~~~dgiil~GG~~~~~~~~~~~~~i~~-~~~ 90 (203)
+.+...+..++++. |.. + .+++.+... .+.+.. .++|.||.+||.| +...+...+.++. +++
T Consensus 22 D~ng~~L~~~L~~~------G~~g~~v~~~iVpDd~~~I~~aL~~a~~~~~~DlIITTGGtg-~g~rDvTpeAv~~l~~k 94 (193)
T PRK09417 22 DKGIPALEEWLASA------LTSPFEIETRLIPDEQDLIEQTLIELVDEMGCDLVLTTGGTG-PARRDVTPEATLAVADK 94 (193)
T ss_pred echHHHHHHHHHHc------CCCCceEEEEECCCCHHHHHHHHHHHhhcCCCCEEEECCCCC-CCCCCcHHHHHHHHhCC
Confidence 34566788888887 532 2 233322111 112221 2589999999865 4445555566666 355
Q ss_pred CCcee
Q 037843 91 TMPLF 95 (203)
Q Consensus 91 ~~Pil 95 (203)
.+|=+
T Consensus 95 eipG~ 99 (193)
T PRK09417 95 EMPGF 99 (193)
T ss_pred cCCcH
Confidence 56654
No 181
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=79.37 E-value=24 Score=27.00 Aligned_cols=74 Identities=15% Similarity=0.263 Sum_probs=42.5
Q ss_pred cEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCCCC
Q 037843 14 PIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELGPTM 92 (203)
Q Consensus 14 ~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~~~~ 92 (203)
+|++++........+...++.. |..+............+....+|.+|+--. .+...+ .....+++.....
T Consensus 2 ~iLlv~d~~~~~~~l~~~L~~~------g~~v~~~~~~~~~l~~~~~~~~dlvild~~--l~~~~g~~l~~~lr~~~~~~ 73 (223)
T PRK10816 2 RVLVVEDNALLRHHLKVQLQDA------GHQVDAAEDAKEADYYLNEHLPDIAIVDLG--LPDEDGLSLIRRWRSNDVSL 73 (223)
T ss_pred eEEEEeCCHHHHHHHHHHHHHC------CCEEEEECCHHHHHHHHhhCCCCEEEEECC--CCCCCHHHHHHHHHhcCCCC
Confidence 6899998877778888888887 887654432111112232336898888321 122222 2234444434568
Q ss_pred cee
Q 037843 93 PLF 95 (203)
Q Consensus 93 Pil 95 (203)
|++
T Consensus 74 pii 76 (223)
T PRK10816 74 PIL 76 (223)
T ss_pred CEE
Confidence 888
No 182
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=78.93 E-value=17 Score=27.73 Aligned_cols=76 Identities=20% Similarity=0.430 Sum_probs=42.8
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELGP 90 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~~ 90 (203)
+++|+|+|....+...+...++.. |..+............+....+|.+++--. .+...+ ...+.+++...
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~------~~~v~~~~~~~~~~~~~~~~~~dlvl~d~~--~~~~~g~~~~~~l~~~~~ 74 (228)
T PRK11083 3 QPTILLVEDEQAIADTLVYALQSE------GFTVEWFERGLPALDKLRQQPPDLVILDVG--LPDISGFELCRQLLAFHP 74 (228)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHC------CCEEEEEcCHHHHHHHHhcCCCCEEEEeCC--CCCCCHHHHHHHHHhhCC
Confidence 357999998877777788888777 877654322111112233336888887322 111122 23344444445
Q ss_pred CCcee
Q 037843 91 TMPLF 95 (203)
Q Consensus 91 ~~Pil 95 (203)
..|++
T Consensus 75 ~~~ii 79 (228)
T PRK11083 75 ALPVI 79 (228)
T ss_pred CCCEE
Confidence 68887
No 183
>PRK06703 flavodoxin; Provisional
Probab=78.89 E-value=10 Score=27.91 Aligned_cols=52 Identities=12% Similarity=0.128 Sum_probs=32.3
Q ss_pred CcEEEE-eCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEE
Q 037843 13 NPIVVI-DNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVI 68 (203)
Q Consensus 13 ~~i~ii-d~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil 68 (203)
++|+|+ ....+++..+++.+.+.. ...|+.+.+....+.+..++. ++|.|||
T Consensus 2 mkv~IiY~S~tGnT~~iA~~ia~~l--~~~g~~v~~~~~~~~~~~~l~--~~d~vii 54 (151)
T PRK06703 2 AKILIAYASMSGNTEDIADLIKVSL--DAFDHEVVLQEMDGMDAEELL--AYDGIIL 54 (151)
T ss_pred CeEEEEEECCCchHHHHHHHHHHHH--HhcCCceEEEehhhCCHHHHh--cCCcEEE
Confidence 355555 556677887777665532 122778877765444455555 5799988
No 184
>PRK14498 putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein; Provisional
Probab=78.21 E-value=13 Score=34.30 Aligned_cols=56 Identities=27% Similarity=0.293 Sum_probs=34.6
Q ss_pred CCcEEEEeCC----------------chHHHHHHHHHHHhhhhhcCCceEEEEe--CCccc--HHHHhc--cCCCEEEEC
Q 037843 12 KNPIVVIDNY----------------DSFTYNLCQYMGELELELSQGYHFEVYR--NDELT--VAELKR--KKPRGVVIS 69 (203)
Q Consensus 12 ~~~i~iid~~----------------~~~~~~l~~~l~~~~~~~~~g~~~~v~~--~~~~~--~~~l~~--~~~dgiil~ 69 (203)
++||.||-.+ +++...+..++++. |+++..+. .|+.. .+.+.. .++|.||++
T Consensus 186 ~prv~vi~tG~El~~~~~~~~~g~i~dsn~~~l~~~l~~~------g~~~~~~~~v~Dd~~~i~~~l~~~~~~~D~iItt 259 (633)
T PRK14498 186 KPRVGIISTGDELVEPGEPLKPGKIYDVNSYTLAAAVEEA------GGEPVRYGIVPDDEEELEAALRKALKECDLVLLS 259 (633)
T ss_pred CcEEEEEecCccccCCCCCCCCCEEEEChHHHHHHHHHHC------CCEEEEEEEeCCCHHHHHHHHHHHHhcCCEEEEC
Confidence 5788887433 34566788889888 88775432 22211 111221 168999999
Q ss_pred CCCC
Q 037843 70 PGPG 73 (203)
Q Consensus 70 GG~~ 73 (203)
||.+
T Consensus 260 GG~s 263 (633)
T PRK14498 260 GGTS 263 (633)
T ss_pred CCCc
Confidence 9975
No 185
>cd00887 MoeA MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.
Probab=77.98 E-value=14 Score=32.08 Aligned_cols=69 Identities=19% Similarity=0.167 Sum_probs=40.2
Q ss_pred CCcEEEEeCC----------------chHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHH----Hhc--cCCCEEEEC
Q 037843 12 KNPIVVIDNY----------------DSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAE----LKR--KKPRGVVIS 69 (203)
Q Consensus 12 ~~~i~iid~~----------------~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~----l~~--~~~dgiil~ 69 (203)
++||.||--+ +++...+..++++. |+.+..+..-..+.+. +.. .++|.||.+
T Consensus 168 ~~rv~ii~tGdEl~~~g~~~~~g~i~dsn~~~l~~~l~~~------G~~~~~~~~v~Dd~~~i~~~l~~a~~~~Dliitt 241 (394)
T cd00887 168 RPRVAIISTGDELVEPGEPLAPGQIYDSNSYMLAALLREL------GAEVVDLGIVPDDPEALREALEEALEEADVVITS 241 (394)
T ss_pred CCEEEEEeCCCcccCCCCCCCCCEEEEChHHHHHHHHHHC------CCEEEEeceeCCCHHHHHHHHHHHhhCCCEEEEe
Confidence 5778887332 35667788889998 8877654321112222 222 158999999
Q ss_pred CCCCCCCCcchHHHHHHH
Q 037843 70 PGPGAPQESGISFRTVLE 87 (203)
Q Consensus 70 GG~~~~~~~~~~~~~i~~ 87 (203)
||.+ +.+.+...+.+.+
T Consensus 242 GG~s-~g~~D~~~~al~~ 258 (394)
T cd00887 242 GGVS-VGDYDFVKEVLEE 258 (394)
T ss_pred CCCC-CCcchhHHHHHHh
Confidence 9865 3344443344443
No 186
>PRK03094 hypothetical protein; Provisional
Probab=77.76 E-value=4.7 Score=26.84 Aligned_cols=47 Identities=15% Similarity=0.126 Sum_probs=31.2
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGA 74 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~ 74 (203)
|+||+|=.. ...+.++|++. |+.+.-+.. ..+.. .+|++|++|-..+
T Consensus 1 ~~kIaVE~~----Ls~i~~~L~~~------GYeVv~l~~----~~~~~--~~Da~VitG~d~n 47 (80)
T PRK03094 1 MAKIGVEQS----LTDVQQALKQK------GYEVVQLRS----EQDAQ--GCDCCVVTGQDSN 47 (80)
T ss_pred CCeEEeecC----cHHHHHHHHHC------CCEEEecCc----ccccC--CcCEEEEeCCCcc
Confidence 356666543 44688899998 998866532 11222 6899999996543
No 187
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=77.73 E-value=13 Score=25.91 Aligned_cols=57 Identities=16% Similarity=0.050 Sum_probs=28.6
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHH-hccCCCEEEECC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAEL-KRKKPRGVVISP 70 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l-~~~~~dgiil~G 70 (203)
|.+|+++-..+--+..+++.+++...+ .|.++.+........++. ...++|.|++++
T Consensus 1 MkkILlvCg~G~STSlla~k~k~~~~e--~gi~~~i~a~~~~e~~~~~~~~~~DvIll~P 58 (104)
T PRK09590 1 MKKALIICAAGMSSSMMAKKTTEYLKE--QGKDIEVDAITATEGEKAIAAAEYDLYLVSP 58 (104)
T ss_pred CcEEEEECCCchHHHHHHHHHHHHHHH--CCCceEEEEecHHHHHHhhccCCCCEEEECh
Confidence 356776654433344555555544221 288887754331222222 222589777743
No 188
>TIGR00200 cinA_nterm competence/damage-inducible protein CinA N-terminal domain. cinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species
Probab=77.54 E-value=16 Score=31.98 Aligned_cols=46 Identities=11% Similarity=0.232 Sum_probs=28.6
Q ss_pred chHHHHHHHHHHHhhhhhcCCceEEEEe--CCccc--HHHHhc--cCCCEEEECCCCC
Q 037843 22 DSFTYNLCQYMGELELELSQGYHFEVYR--NDELT--VAELKR--KKPRGVVISPGPG 73 (203)
Q Consensus 22 ~~~~~~l~~~l~~~~~~~~~g~~~~v~~--~~~~~--~~~l~~--~~~dgiil~GG~~ 73 (203)
+++...+.+.++++ |+++..+. .|+.. .+.+.. .++|.||++||-|
T Consensus 19 dtN~~~l~~~L~~~------G~~v~~~~~v~Dd~~~i~~~l~~a~~~~DlVIttGGlg 70 (413)
T TIGR00200 19 NTNAQWLADFLAHQ------GLPLSRRTTVGDNPERLKTIIRIASERADVLIFNGGLG 70 (413)
T ss_pred EchHHHHHHHHHHC------CCeEEEEEEeCCCHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 35667788889998 88775332 22211 122221 2689999999965
No 189
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=77.25 E-value=17 Score=28.79 Aligned_cols=60 Identities=17% Similarity=0.233 Sum_probs=30.3
Q ss_pred HHHHHHHhhhhhcCCceEEEEeCCccc------HHHHhccCCCEEEECCCCCCCCCcchHHHHHHHh-CCCCcee
Q 037843 28 LCQYMGELELELSQGYHFEVYRNDELT------VAELKRKKPRGVVISPGPGAPQESGISFRTVLEL-GPTMPLF 95 (203)
Q Consensus 28 l~~~l~~~~~~~~~g~~~~v~~~~~~~------~~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~~-~~~~Pil 95 (203)
+.+++++. |+.+.+...+... .+.+...++||||+.+.. ..+.......+..+ ..++|++
T Consensus 21 i~~~~~~~------g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~--~~~~~~~~~~i~~~~~~~ipvV 87 (273)
T cd06292 21 IEAALAQY------GYTVLLCNTYRGGVSEADYVEDLLARGVRGVVFISSL--HADTHADHSHYERLAERGLPVV 87 (273)
T ss_pred HHHHHHHC------CCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEeCCC--CCcccchhHHHHHHHhCCCCEE
Confidence 44455555 8988776543111 122333479999997632 22222122233332 3567776
No 190
>COG4090 Uncharacterized protein conserved in archaea [Function unknown]
Probab=76.79 E-value=4.2 Score=29.69 Aligned_cols=43 Identities=23% Similarity=0.240 Sum_probs=28.3
Q ss_pred CCCEEEECCCCCCCCC---cchHHHHHHHhCCCCcee--ehhHHHHHHHhC
Q 037843 62 KPRGVVISPGPGAPQE---SGISFRTVLELGPTMPLF--CMGLKCIGEALE 107 (203)
Q Consensus 62 ~~dgiil~GG~~~~~~---~~~~~~~i~~~~~~~Pil--ClG~Qlla~a~g 107 (203)
..|.||+.||-..|.- .+...+++.+..+ +|++ | +|-|.+-.|
T Consensus 85 ~aDvvVLlGGLaMP~~gv~~d~~kel~ee~~~-kkliGvC--fm~mF~rag 132 (154)
T COG4090 85 SADVVVLLGGLAMPKIGVTPDDAKELLEELGN-KKLIGVC--FMNMFERAG 132 (154)
T ss_pred cccEEEEEcccccCcCCCCHHHHHHHHHhcCC-CceEEee--HHHHHHHcC
Confidence 3799999999888753 2345566666543 4888 9 455554333
No 191
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=76.49 E-value=15 Score=33.91 Aligned_cols=69 Identities=16% Similarity=0.169 Sum_probs=39.6
Q ss_pred CCcEEEEeCC----------------chHHHHHHHHHHHhhhhhcCCceEEEEe--CCccc--HHHHhc--cCCCEEEEC
Q 037843 12 KNPIVVIDNY----------------DSFTYNLCQYMGELELELSQGYHFEVYR--NDELT--VAELKR--KKPRGVVIS 69 (203)
Q Consensus 12 ~~~i~iid~~----------------~~~~~~l~~~l~~~~~~~~~g~~~~v~~--~~~~~--~~~l~~--~~~dgiil~ 69 (203)
++||.||-.+ +++...+..++++. |+.+..+. .|+.. .+.+.. .++|.||.+
T Consensus 367 ~prV~IistGdEl~~~g~~~~~g~i~dsn~~~L~~~l~~~------G~~v~~~~~v~Dd~~~i~~~l~~a~~~~DlIItt 440 (597)
T PRK14491 367 RPKVAVFSTGDEVQAPGETLKPNCIYDSNRFTIKAMAKKL------GCEVIDLGIIEDSEAALEATLEQAAAQADVVISS 440 (597)
T ss_pred CCEEEEEecCCeeccCCCcCCCCcEEeCCHHHHHHHHHHC------CCEEEEEEEeCCCHHHHHHHHHHhhhcCCEEEEc
Confidence 5788888433 34566788889998 88765332 22211 112222 258999999
Q ss_pred CCCCCCCCcchHHHHHHH
Q 037843 70 PGPGAPQESGISFRTVLE 87 (203)
Q Consensus 70 GG~~~~~~~~~~~~~i~~ 87 (203)
||.+ +.+.+...+.+++
T Consensus 441 GG~s-~G~~D~~~~al~~ 457 (597)
T PRK14491 441 GGVS-VGDADYIKTALAK 457 (597)
T ss_pred CCcc-CCCcccHHHHHHh
Confidence 9864 3434433334433
No 192
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=76.12 E-value=19 Score=30.01 Aligned_cols=75 Identities=17% Similarity=0.208 Sum_probs=42.4
Q ss_pred cCCCCCcEEEEeCCch-H----HHHHHHHHHHhhhhhcCCceEEEEeCCc--c--------cHHHHhccCCCEEEECCCC
Q 037843 8 SKNDKNPIVVIDNYDS-F----TYNLCQYMGELELELSQGYHFEVYRNDE--L--------TVAELKRKKPRGVVISPGP 72 (203)
Q Consensus 8 ~~~~~~~i~iid~~~~-~----~~~l~~~l~~~~~~~~~g~~~~v~~~~~--~--------~~~~l~~~~~dgiil~GG~ 72 (203)
|+..+++|+|+-+... . ...+.+++++. |+.+.+..... . +..++. .++|.+|..||.
T Consensus 1 ~~~~~~~i~iv~~~~~~~~~~~~~~i~~~l~~~------g~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~vi~lGGD 73 (292)
T PRK03378 1 MNNHFKCIGIVGHPRHPTALTTHEMLYHWLTSK------GYEVIVEQQIAHELQLKNVKTGTLAEIG-QQADLAIVVGGD 73 (292)
T ss_pred CCccCCEEEEEEeCCCHHHHHHHHHHHHHHHHC------CCEEEEecchhhhcCcccccccchhhcC-CCCCEEEEECCc
Confidence 4555677988865432 1 23355566666 88776533110 0 112222 157999999996
Q ss_pred CCCCCcchHHHHHHHh-CCCCcee
Q 037843 73 GAPQESGISFRTVLEL-GPTMPLF 95 (203)
Q Consensus 73 ~~~~~~~~~~~~i~~~-~~~~Pil 95 (203)
|. +....+.+ ..++|||
T Consensus 74 GT------~L~aa~~~~~~~~Pil 91 (292)
T PRK03378 74 GN------MLGAARVLARYDIKVI 91 (292)
T ss_pred HH------HHHHHHHhcCCCCeEE
Confidence 53 34455554 3468988
No 193
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=76.12 E-value=6.9 Score=29.71 Aligned_cols=51 Identities=20% Similarity=0.266 Sum_probs=27.9
Q ss_pred cEEEE-eCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEE
Q 037843 14 PIVVI-DNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVI 68 (203)
Q Consensus 14 ~i~ii-d~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil 68 (203)
++||+ ..-++-+.-+++++....+|. |..+++.+... ..++...+||.|||
T Consensus 2 k~LIlYstr~GqT~kIA~~iA~~L~e~--g~qvdi~dl~~--~~~~~l~~ydavVI 53 (175)
T COG4635 2 KTLILYSTRDGQTRKIAEYIASHLRES--GIQVDIQDLHA--VEEPALEDYDAVVI 53 (175)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHhhhc--CCeeeeeehhh--hhccChhhCceEEE
Confidence 55665 223344555555443332222 89998876432 23223337899999
No 194
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=75.78 E-value=28 Score=28.93 Aligned_cols=73 Identities=18% Similarity=0.296 Sum_probs=40.4
Q ss_pred CCCCcEEEEeCCchH-----HHHHHHHHHHhhhhhcCCceEEEEeCCc----------ccHHHHhccCCCEEEECCCCCC
Q 037843 10 NDKNPIVVIDNYDSF-----TYNLCQYMGELELELSQGYHFEVYRNDE----------LTVAELKRKKPRGVVISPGPGA 74 (203)
Q Consensus 10 ~~~~~i~iid~~~~~-----~~~l~~~l~~~~~~~~~g~~~~v~~~~~----------~~~~~l~~~~~dgiil~GG~~~ 74 (203)
..+++|+|+-+...- ...+.++++.. |+.+.+..... .+.+++. ..+|.+|..||.|.
T Consensus 3 ~~~~~v~iv~~~~~~~~~e~~~~i~~~L~~~------g~~v~v~~~~~~~~~~~~~~~~~~~~~~-~~~d~vi~~GGDGt 75 (291)
T PRK02155 3 SQFKTVALIGRYQTPGIAEPLESLAAFLAKR------GFEVVFEADTARNIGLTGYPALTPEEIG-ARADLAVVLGGDGT 75 (291)
T ss_pred CcCCEEEEEecCCCHHHHHHHHHHHHHHHHC------CCEEEEecchhhhcCcccccccChhHhc-cCCCEEEEECCcHH
Confidence 334568888654321 23455566665 88765532110 0112222 25799999999654
Q ss_pred CCCcchHHHHHHHh-CCCCcee
Q 037843 75 PQESGISFRTVLEL-GPTMPLF 95 (203)
Q Consensus 75 ~~~~~~~~~~i~~~-~~~~Pil 95 (203)
+...++.+ ..++|+|
T Consensus 76 ------~l~~~~~~~~~~~pil 91 (291)
T PRK02155 76 ------MLGIGRQLAPYGVPLI 91 (291)
T ss_pred ------HHHHHHHhcCCCCCEE
Confidence 34555553 4567888
No 195
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=75.75 E-value=20 Score=27.14 Aligned_cols=74 Identities=15% Similarity=0.221 Sum_probs=42.7
Q ss_pred cEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCCCC
Q 037843 14 PIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELGPTM 92 (203)
Q Consensus 14 ~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~~~~ 92 (203)
+|+|+|....+...+...++.. |..+............+....+|.+|+--.. +...+ ...+.++......
T Consensus 2 ~ilivdd~~~~~~~l~~~L~~~------~~~v~~~~~~~~~~~~~~~~~~dlvild~~l--~~~~g~~~~~~i~~~~~~~ 73 (219)
T PRK10336 2 RILLIEDDMLIGDGIKTGLSKM------GFSVDWFTQGRQGKEALYSAPYDAVILDLTL--PGMDGRDILREWREKGQRE 73 (219)
T ss_pred eEEEEcCCHHHHHHHHHHHHHC------CCEEEEeCCHHHHHHHHhhCCCCEEEEECCC--CCCCHHHHHHHHHhcCCCC
Confidence 6899998877778888888877 8776543221111222333368888884321 11112 2344455544567
Q ss_pred cee
Q 037843 93 PLF 95 (203)
Q Consensus 93 Pil 95 (203)
|++
T Consensus 74 ~ii 76 (219)
T PRK10336 74 PVL 76 (219)
T ss_pred cEE
Confidence 888
No 196
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=75.17 E-value=26 Score=24.71 Aligned_cols=32 Identities=25% Similarity=0.428 Sum_probs=20.4
Q ss_pred CcEEEE---eCCchHHHHHHHHHHHhhhhhcCCceEEEEeC
Q 037843 13 NPIVVI---DNYDSFTYNLCQYMGELELELSQGYHFEVYRN 50 (203)
Q Consensus 13 ~~i~ii---d~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~ 50 (203)
++|+|| +....+.+.+.+.+++. |.++..+.+
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~------G~~v~~Vnp 35 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAA------GYEVYPVNP 35 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHT------T-EEEEEST
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhC------CCEEEEECC
Confidence 357777 34456677788888887 877666544
No 197
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=74.30 E-value=19 Score=24.58 Aligned_cols=54 Identities=13% Similarity=0.115 Sum_probs=27.9
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHh--ccCCCEEEECC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELK--RKKPRGVVISP 70 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~--~~~~dgiil~G 70 (203)
+.+|+++-..+--+..+++.+++... ..|+++++.... ..++. ..++|.|++++
T Consensus 3 ~~~ILl~C~~G~sSS~l~~k~~~~~~--~~gi~~~v~a~~---~~~~~~~~~~~Dvill~p 58 (95)
T TIGR00853 3 ETNILLLCAAGMSTSLLVNKMNKAAE--EYGVPVKIAAGS---YGAAGEKLDDADVVLLAP 58 (95)
T ss_pred ccEEEEECCCchhHHHHHHHHHHHHH--HCCCcEEEEEec---HHHHHhhcCCCCEEEECc
Confidence 35677664332224445554544321 128888776543 33332 13689888854
No 198
>cd03522 MoeA_like MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.
Probab=74.16 E-value=27 Score=29.48 Aligned_cols=70 Identities=11% Similarity=0.108 Sum_probs=41.1
Q ss_pred CCcEEEEeCC---------chHHHHHHHHHHHhhhhhcCCceEEEEe--CCccc--HHHHhc---cCCCEEEECCCCCCC
Q 037843 12 KNPIVVIDNY---------DSFTYNLCQYMGELELELSQGYHFEVYR--NDELT--VAELKR---KKPRGVVISPGPGAP 75 (203)
Q Consensus 12 ~~~i~iid~~---------~~~~~~l~~~l~~~~~~~~~g~~~~v~~--~~~~~--~~~l~~---~~~dgiil~GG~~~~ 75 (203)
+++|.||..+ +++...+...+++. |+++.... .|+.. .+.+.. ..+|.||+|||.+ +
T Consensus 159 ~~rv~II~TG~Ev~~G~i~D~~~~~l~~~L~~~------G~~v~~~~iv~Dd~~~I~~ai~~~~~~g~DlIItTGGts-v 231 (312)
T cd03522 159 PLRVGLIVTGSEVYGGRIEDKFGPVLRARLAAL------GVELVEQVIVPHDEAAIAAAIAEALEAGAELLILTGGAS-V 231 (312)
T ss_pred CCEEEEEEcCCcCCCCcEEEhHHHHHHHHHHHC------CCEEEEEEEcCCCHHHHHHHHHHHhcCCCCEEEEeCCcc-c
Confidence 5788888533 45566788888888 88775432 22211 122221 1379999998854 4
Q ss_pred CCcchHHHHHHHh
Q 037843 76 QESGISFRTVLEL 88 (203)
Q Consensus 76 ~~~~~~~~~i~~~ 88 (203)
...+...+.++++
T Consensus 232 g~~D~tp~Ai~~~ 244 (312)
T cd03522 232 DPDDVTPAAIRAA 244 (312)
T ss_pred CCcchHHHHHHhc
Confidence 4444455555554
No 199
>PRK03670 competence damage-inducible protein A; Provisional
Probab=74.00 E-value=31 Score=28.11 Aligned_cols=47 Identities=30% Similarity=0.405 Sum_probs=28.6
Q ss_pred chHHHHHHHHHHHhhhhhcCCceEEEEe--CCccc--HHHHhc---cCCCEEEECCCCCC
Q 037843 22 DSFTYNLCQYMGELELELSQGYHFEVYR--NDELT--VAELKR---KKPRGVVISPGPGA 74 (203)
Q Consensus 22 ~~~~~~l~~~l~~~~~~~~~g~~~~v~~--~~~~~--~~~l~~---~~~dgiil~GG~~~ 74 (203)
+++...+.+.++.+ |+++..+. .|+.. .+.+.. ..+|.||++||-|.
T Consensus 19 dtN~~~la~~L~~~------G~~v~~~~iV~Dd~~~I~~~l~~a~~~~~DlVIttGGlGp 72 (252)
T PRK03670 19 DSNSAFIAQKLTEK------GYWVRRITTVGDDVEEIKSVVLEILSRKPEVLVISGGLGP 72 (252)
T ss_pred ehhHHHHHHHHHHC------CCEEEEEEEcCCCHHHHHHHHHHHhhCCCCEEEECCCccC
Confidence 34566788889888 88875432 23221 122221 14799999999764
No 200
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=73.67 E-value=25 Score=26.97 Aligned_cols=74 Identities=12% Similarity=0.148 Sum_probs=42.0
Q ss_pred cEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCCCC
Q 037843 14 PIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELGPTM 92 (203)
Q Consensus 14 ~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~~~~ 92 (203)
+|+|++........+...++.. |..+............+....+|.+|+--. .+...+ .+...+++.....
T Consensus 2 ~iliv~d~~~~~~~l~~~L~~~------g~~v~~~~~~~~~~~~~~~~~~dlvild~~--~~~~~g~~~~~~lr~~~~~~ 73 (227)
T PRK09836 2 KLLIVEDEKKTGEYLTKGLTEA------GFVVDLADNGLNGYHLAMTGDYDLIILDIM--LPDVNGWDIVRMLRSANKGM 73 (227)
T ss_pred eEEEEeCCHHHHHHHHHHHHHC------CCEEEEECCHHHHHHHHhhCCCCEEEEECC--CCCCCHHHHHHHHHhcCCCC
Confidence 6899998877777888888777 886654322111112222336898888322 111122 2334444444568
Q ss_pred cee
Q 037843 93 PLF 95 (203)
Q Consensus 93 Pil 95 (203)
|++
T Consensus 74 pii 76 (227)
T PRK09836 74 PIL 76 (227)
T ss_pred CEE
Confidence 887
No 201
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=73.65 E-value=27 Score=29.07 Aligned_cols=79 Identities=9% Similarity=0.042 Sum_probs=44.2
Q ss_pred cccccCCCCCcEEEEeCCchHH----HHHHHHHHHhhhhhcCCceEEEEeCCc-------ccHHHHhccCCCEEEECCCC
Q 037843 4 VLKLSKNDKNPIVVIDNYDSFT----YNLCQYMGELELELSQGYHFEVYRNDE-------LTVAELKRKKPRGVVISPGP 72 (203)
Q Consensus 4 ~~~~~~~~~~~i~iid~~~~~~----~~l~~~l~~~~~~~~~g~~~~v~~~~~-------~~~~~l~~~~~dgiil~GG~ 72 (203)
|+++--+.+++|+|+-+...-. ..+.+++++. |+.+.+..... ...+++.. ++|.+|.-||.
T Consensus 2 ~~~~~~~~~~~i~ii~~~~~~~~~~~~~i~~~l~~~------g~~~~~~~~~~~~~~~~~~~~~~~~~-~~Dlvi~iGGD 74 (287)
T PRK14077 2 QNKIDHKNIKKIGLVTRPNVSLDKEILKLQKILSIY------KVEILLEKESAEILDLPGYGLDELFK-ISDFLISLGGD 74 (287)
T ss_pred ccccccccCCEEEEEeCCcHHHHHHHHHHHHHHHHC------CCEEEEecchhhhhcccccchhhccc-CCCEEEEECCC
Confidence 3455555567799886644322 2244455555 88776543210 01122221 57999988996
Q ss_pred CCCCCcchHHHHHHHh-CCCCcee
Q 037843 73 GAPQESGISFRTVLEL-GPTMPLF 95 (203)
Q Consensus 73 ~~~~~~~~~~~~i~~~-~~~~Pil 95 (203)
|. +....+.+ ..++|||
T Consensus 75 GT------~L~aa~~~~~~~~Pil 92 (287)
T PRK14077 75 GT------LISLCRKAAEYDKFVL 92 (287)
T ss_pred HH------HHHHHHHhcCCCCcEE
Confidence 53 34555554 4578998
No 202
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]
Probab=73.43 E-value=15 Score=32.80 Aligned_cols=75 Identities=13% Similarity=0.196 Sum_probs=43.2
Q ss_pred CCcEEEEeCCchHH-HHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCC-----CCC-cchHHHH
Q 037843 12 KNPIVVIDNYDSFT-YNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGA-----PQE-SGISFRT 84 (203)
Q Consensus 12 ~~~i~iid~~~~~~-~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~-----~~~-~~~~~~~ 84 (203)
+.||+|||....+. ..+.+.|... |+++.++.....+. +. ...+-|+| |+..- ++. .|...-.
T Consensus 385 ~frVvVVDSRP~~EG~~~lr~Lv~~------GinctYv~I~a~sy--im-~evtkvfL-GahailsNG~vysR~GTa~va 454 (556)
T KOG1467|consen 385 KFRVVVVDSRPNLEGRKLLRRLVDR------GINCTYVLINAASY--IM-LEVTKVFL-GAHAILSNGAVYSRVGTACVA 454 (556)
T ss_pred ceEEEEEeCCCCcchHHHHHHHHHc------CCCeEEEEehhHHH--HH-Hhcceeee-chhhhhcCcchhhhcchHHHH
Confidence 46899999887664 3466778787 99988765432222 22 13455655 54321 111 1222222
Q ss_pred HHHhCCCCcee-e
Q 037843 85 VLELGPTMPLF-C 96 (203)
Q Consensus 85 i~~~~~~~Pil-C 96 (203)
+-+...++|+| |
T Consensus 455 lvAna~nVPVlVC 467 (556)
T KOG1467|consen 455 LVANAFNVPVLVC 467 (556)
T ss_pred HHhcccCCCEEEE
Confidence 33345789999 6
No 203
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=73.43 E-value=26 Score=26.82 Aligned_cols=77 Identities=16% Similarity=0.355 Sum_probs=42.3
Q ss_pred CcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCC-CCcchHHHHHHHhCCC
Q 037843 13 NPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAP-QESGISFRTVLELGPT 91 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~-~~~~~~~~~i~~~~~~ 91 (203)
++|+|+|....+...+...++.. |..+............+....+|.+|+--..... .+.-.+.+.++.....
T Consensus 1 ~~iLivdd~~~~~~~l~~~L~~~------~~~v~~~~~~~~~~~~~~~~~~dlvild~~l~~~~~~g~~~~~~i~~~~~~ 74 (227)
T TIGR03787 1 KRIAIVEDEAAIRENYADALKRQ------GYQVTTYADRPSAMQAFRQRLPDLAIIDIGLGEEIDGGFMLCQDLRSLSAT 74 (227)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHC------CcEEEEecCHHHHHHHHHhCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCC
Confidence 36899998877777888888776 8776543211111122333368988883221110 0111233444444446
Q ss_pred Ccee
Q 037843 92 MPLF 95 (203)
Q Consensus 92 ~Pil 95 (203)
.|++
T Consensus 75 ~pii 78 (227)
T TIGR03787 75 LPII 78 (227)
T ss_pred CCEE
Confidence 7887
No 204
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=72.97 E-value=26 Score=30.38 Aligned_cols=80 Identities=16% Similarity=0.292 Sum_probs=44.6
Q ss_pred cCCCCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHH
Q 037843 8 SKNDKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVL 86 (203)
Q Consensus 8 ~~~~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~ 86 (203)
|+..+.+|+|+|........+.+.++.. |..+............+....+|.|++--. .+...+ .+...++
T Consensus 1 m~~~~~~Ilivdd~~~~~~~l~~~L~~~------g~~v~~~~~~~~al~~l~~~~~DlvilD~~--m~~~~G~~~~~~ir 72 (441)
T PRK10365 1 MTHDNIDILVVDDDISHCTILQALLRGW------GYNVALANSGRQALEQVREQVFDLVLCDVR--MAEMDGIATLKEIK 72 (441)
T ss_pred CCCCcceEEEEECCHHHHHHHHHHHHHC------CCeEEEeCCHHHHHHHHhcCCCCEEEEeCC--CCCCCHHHHHHHHH
Confidence 4455688999998887778888888887 877654322111112233335788777221 111111 2234444
Q ss_pred HhCCCCcee
Q 037843 87 ELGPTMPLF 95 (203)
Q Consensus 87 ~~~~~~Pil 95 (203)
+.....|++
T Consensus 73 ~~~~~~~vi 81 (441)
T PRK10365 73 ALNPAIPVL 81 (441)
T ss_pred hhCCCCeEE
Confidence 444456766
No 205
>PRK00549 competence damage-inducible protein A; Provisional
Probab=72.92 E-value=26 Score=30.67 Aligned_cols=47 Identities=17% Similarity=0.260 Sum_probs=29.3
Q ss_pred chHHHHHHHHHHHhhhhhcCCceEEEEe--CCccc--HHHHhc--cCCCEEEECCCCCC
Q 037843 22 DSFTYNLCQYMGELELELSQGYHFEVYR--NDELT--VAELKR--KKPRGVVISPGPGA 74 (203)
Q Consensus 22 ~~~~~~l~~~l~~~~~~~~~g~~~~v~~--~~~~~--~~~l~~--~~~dgiil~GG~~~ 74 (203)
+++...+.+.++++ |+++..+. .|+.. .+.+.. .++|.||++||-|.
T Consensus 19 DtN~~~L~~~L~~~------G~~v~~~~~v~Dd~~~I~~~l~~a~~~~DlVItTGGlGp 71 (414)
T PRK00549 19 NTNAQFLSEKLAEL------GIDVYHQTVVGDNPERLLSALEIAEERSDLIITTGGLGP 71 (414)
T ss_pred EhhHHHHHHHHHHC------CCeEEEEEEeCCCHHHHHHHHHHhccCCCEEEECCCCCC
Confidence 45667788899998 88775432 23211 122221 26899999999763
No 206
>PRK15029 arginine decarboxylase; Provisional
Probab=72.91 E-value=17 Score=34.51 Aligned_cols=74 Identities=9% Similarity=0.044 Sum_probs=43.4
Q ss_pred cEEEEeCCch--------HHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhc-cCCCEEEECCCCCCCCCcc-----
Q 037843 14 PIVVIDNYDS--------FTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKR-KKPRGVVISPGPGAPQESG----- 79 (203)
Q Consensus 14 ~i~iid~~~~--------~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~-~~~dgiil~GG~~~~~~~~----- 79 (203)
+|+|||-... ....+.+.|+.. |..+........-...+.. .++|.||+-= ..|...+
T Consensus 2 kILIVDDD~~~~~~~~~~i~~~L~~~Le~~------G~eV~~a~s~~dAl~~l~~~~~~DlVLLD~--~LPd~dG~~~~~ 73 (755)
T PRK15029 2 KVLIVESEFLHQDTWVGNAVERLADALSQQ------NVTVIKSTSFDDGFAILSSNEAIDCLMFSY--QMEHPDEHQNVR 73 (755)
T ss_pred eEEEEeCCcccccchhHHHHHHHHHHHHHC------CCEEEEECCHHHHHHHHHhcCCCcEEEEEC--CCCCCccchhHH
Confidence 6999976553 356677778777 9988765432111223333 3689999831 1222222
Q ss_pred hHHHHHHHhCCCCcee
Q 037843 80 ISFRTVLELGPTMPLF 95 (203)
Q Consensus 80 ~~~~~i~~~~~~~Pil 95 (203)
.+.+.|++...++||+
T Consensus 74 ell~~IR~~~~~iPII 89 (755)
T PRK15029 74 QLIGKLHERQQNVPVF 89 (755)
T ss_pred HHHHHHHhhCCCCCEE
Confidence 3445555544579998
No 207
>CHL00148 orf27 Ycf27; Reviewed
Probab=72.89 E-value=13 Score=28.66 Aligned_cols=77 Identities=18% Similarity=0.300 Sum_probs=43.3
Q ss_pred CCCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHh
Q 037843 10 NDKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLEL 88 (203)
Q Consensus 10 ~~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~ 88 (203)
..+++|+++|....+...+.+.++.. |..+............+....+|.+++--.. +...+ ...+.+++.
T Consensus 4 ~~~~~ilivdd~~~~~~~l~~~l~~~------~~~v~~~~~~~~~l~~~~~~~~d~illd~~~--~~~~g~~~~~~l~~~ 75 (240)
T CHL00148 4 NSKEKILVVDDEAYIRKILETRLSII------GYEVITASDGEEALKLFRKEQPDLVILDVMM--PKLDGYGVCQEIRKE 75 (240)
T ss_pred CCCceEEEEeCCHHHHHHHHHHHHHC------CCEEEEeCCHHHHHHHHHhcCCCEEEEeCCC--CCCCHHHHHHHHHhc
Confidence 34568999998887777888888777 7776543211111122333368888883221 11122 223444443
Q ss_pred CCCCcee
Q 037843 89 GPTMPLF 95 (203)
Q Consensus 89 ~~~~Pil 95 (203)
...|++
T Consensus 76 -~~~~ii 81 (240)
T CHL00148 76 -SDVPII 81 (240)
T ss_pred -CCCcEE
Confidence 468887
No 208
>PRK06242 flavodoxin; Provisional
Probab=72.56 E-value=14 Score=26.95 Aligned_cols=72 Identities=10% Similarity=0.050 Sum_probs=37.3
Q ss_pred cEEEE-eCC-chHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCC-cchHHHHHHHh--
Q 037843 14 PIVVI-DNY-DSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQE-SGISFRTVLEL-- 88 (203)
Q Consensus 14 ~i~ii-d~~-~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~-~~~~~~~i~~~-- 88 (203)
+++|| ... .+++..+++.+.+.. ++ .+++......+++. ++|.||| |+|-.... ...+..++.++
T Consensus 2 k~~IiY~S~~tGnT~~~A~~ia~~l-----~~--~~~~i~~~~~~~~~--~~d~ii~-g~pvy~~~~~~~~~~fl~~~~~ 71 (150)
T PRK06242 2 KALIVYASVHHGNTEKIAKAIAEVL-----DA--EVIDPGDVNPEDLS--EYDLIGF-GSGIYFGKFHKSLLKLIEKLPP 71 (150)
T ss_pred cEEEEEeCCCCCCHHHHHHHHHHhc-----Cc--EEecHHHCCcccHh--HCCEEEE-eCchhcCCcCHHHHHHHHhhhh
Confidence 34455 443 478888998886641 43 34332222233344 6799999 55522111 22344555543
Q ss_pred CCCCcee
Q 037843 89 GPTMPLF 95 (203)
Q Consensus 89 ~~~~Pil 95 (203)
..++|+.
T Consensus 72 ~~~k~~~ 78 (150)
T PRK06242 72 VSGKKAF 78 (150)
T ss_pred hcCCeEE
Confidence 1456665
No 209
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=72.30 E-value=12 Score=28.84 Aligned_cols=76 Identities=14% Similarity=0.224 Sum_probs=42.8
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHh--
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLEL-- 88 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~-- 88 (203)
..+|+|+|....+...+.+.++.. |..+..........+.+....+|.||+--.. +...+ .....+++.
T Consensus 2 ~~~Ilivdd~~~~~~~l~~~L~~~------g~~v~~~~~~~~~~~~~~~~~~dlvild~~l--~~~~g~~~~~~l~~~~~ 73 (229)
T PRK10161 2 ARRILVVEDEAPIREMVCFVLEQN------GFQPVEAEDYDSAVNQLNEPWPDLILLDWML--PGGSGIQFIKHLKRESM 73 (229)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHC------CCEEEEECCHHHHHHHHhccCCCEEEEeCCC--CCCCHHHHHHHHHhccc
Confidence 357999998877778888888776 8776543221111222333368988883321 11111 223444442
Q ss_pred CCCCcee
Q 037843 89 GPTMPLF 95 (203)
Q Consensus 89 ~~~~Pil 95 (203)
....|++
T Consensus 74 ~~~~pvi 80 (229)
T PRK10161 74 TRDIPVV 80 (229)
T ss_pred cCCCCEE
Confidence 2467887
No 210
>PRK07308 flavodoxin; Validated
Probab=72.18 E-value=22 Score=25.92 Aligned_cols=51 Identities=6% Similarity=0.117 Sum_probs=31.2
Q ss_pred cEEEE-eCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEE
Q 037843 14 PIVVI-DNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVI 68 (203)
Q Consensus 14 ~i~ii-d~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil 68 (203)
++.|+ ....+++..+++.+.+... ..|..+++.+....+..++. ++|+|||
T Consensus 3 ~~~IvY~S~tGnTe~iA~~ia~~l~--~~g~~~~~~~~~~~~~~~l~--~~d~vi~ 54 (146)
T PRK07308 3 LAKIVYASMTGNTEEIADIVADKLR--ELGHDVDVDECTTVDASDFE--DADIAIV 54 (146)
T ss_pred eEEEEEECCCchHHHHHHHHHHHHH--hCCCceEEEecccCCHhHhc--cCCEEEE
Confidence 56555 4455667777776654321 12777777665444555655 5799988
No 211
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=71.67 E-value=21 Score=31.85 Aligned_cols=86 Identities=19% Similarity=0.200 Sum_probs=52.5
Q ss_pred CCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhC
Q 037843 11 DKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELG 89 (203)
Q Consensus 11 ~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~ 89 (203)
++.+|+|||-..+....+..+|+.. |..+.....-..-.+.+....+|.||+ -= ..|...+ .+.+.+++..
T Consensus 3 ~~~~iLvVDDd~~ir~~l~~~L~~~------G~~v~~a~~~~~al~~i~~~~~~lvl~-Di-~mp~~~Gl~ll~~i~~~~ 74 (464)
T COG2204 3 MMARILVVDDDPDIRELLEQALELA------GYEVVTAESAEEALEALSESPFDLVLL-DI-RMPGMDGLELLKEIKSRD 74 (464)
T ss_pred CcCCEEEEeCCHHHHHHHHHHHHHc------CCeEEEeCCHHHHHHHHhcCCCCEEEE-ec-CCCCCchHHHHHHHHhhC
Confidence 3467999999888888899999998 988776543111122333333555555 21 1232222 2455666666
Q ss_pred CCCcee-ehhHHHHHH
Q 037843 90 PTMPLF-CMGLKCIGE 104 (203)
Q Consensus 90 ~~~Pil-ClG~Qlla~ 104 (203)
.+.|++ .-||--+-.
T Consensus 75 ~~~pVI~~Tg~g~i~~ 90 (464)
T COG2204 75 PDLPVIVMTGHGDIDT 90 (464)
T ss_pred CCCCEEEEeCCCCHHH
Confidence 789999 777665433
No 212
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=71.63 E-value=14 Score=28.14 Aligned_cols=76 Identities=13% Similarity=0.232 Sum_probs=42.3
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHh--
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLEL-- 88 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~-- 88 (203)
..+|+|+|....+...+...++.. |..+............+....+|.+++--.. +...+ .....++..
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~------~~~v~~~~~~~~~~~~~~~~~~d~vi~d~~~--~~~~g~~~~~~l~~~~~ 73 (226)
T TIGR02154 2 TRRILVVEDEPAIRELIAYNLEKA------GYDVVEAGDGDEALTLINERGPDLILLDWML--PGTSGIELCRRLRRRPE 73 (226)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHC------CCEEEEEcCHHHHHHHHHhcCCCEEEEECCC--CCCcHHHHHHHHHcccc
Confidence 467999998887778888888776 7776543221111122333368998883221 11111 223344432
Q ss_pred CCCCcee
Q 037843 89 GPTMPLF 95 (203)
Q Consensus 89 ~~~~Pil 95 (203)
....|++
T Consensus 74 ~~~~~ii 80 (226)
T TIGR02154 74 TRAIPII 80 (226)
T ss_pred CCCCCEE
Confidence 2457887
No 213
>PRK12359 flavodoxin FldB; Provisional
Probab=71.55 E-value=17 Score=27.73 Aligned_cols=48 Identities=6% Similarity=0.075 Sum_probs=31.8
Q ss_pred cEEEE-eCCchHHHHHHHHHHHhhhhhcCCc-eEEEEeCCcccHHHHhccCCCEEEE
Q 037843 14 PIVVI-DNYDSFTYNLCQYMGELELELSQGY-HFEVYRNDELTVAELKRKKPRGVVI 68 (203)
Q Consensus 14 ~i~ii-d~~~~~~~~l~~~l~~~~~~~~~g~-~~~v~~~~~~~~~~l~~~~~dgiil 68 (203)
+|+|+ -...+++..+++.+++.. |. .+++++....+++++. ++|.|||
T Consensus 2 ki~I~Y~S~TGNTe~vAe~I~~~l-----g~~~v~v~~i~~~~~~~l~--~yD~iIl 51 (172)
T PRK12359 2 KIGLFYGSSTCYTEMAAEKIRDII-----GEELVDLHNLKDDPPKLME--QYDVLIL 51 (172)
T ss_pred eEEEEEECCCCHHHHHHHHHHHHh-----CCCeEEEEEcccCChhHHc--cCCEEEE
Confidence 45555 556678888998886652 44 3556655545566666 5799998
No 214
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=70.28 E-value=21 Score=27.75 Aligned_cols=36 Identities=14% Similarity=0.107 Sum_probs=21.5
Q ss_pred cEEEE-eCCchHHHHHHHHHHHhhhhhcCCceEEEEeC
Q 037843 14 PIVVI-DNYDSFTYNLCQYMGELELELSQGYHFEVYRN 50 (203)
Q Consensus 14 ~i~ii-d~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~ 50 (203)
+|+|| ....+.+..+++++.+-. +...|+++++++.
T Consensus 2 kilIiY~S~~G~T~~lA~~ia~g~-~~~~g~ev~~~~v 38 (197)
T TIGR01755 2 KVLVLYYSMYGHIETMARAVAEGA-REVDGAEVVVKRV 38 (197)
T ss_pred eEEEEEeCCCCHHHHHHHHHHHHH-HhcCCCEEEEEec
Confidence 56666 333466777887776632 2223788877664
No 215
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=69.95 E-value=33 Score=25.90 Aligned_cols=74 Identities=20% Similarity=0.257 Sum_probs=41.4
Q ss_pred cEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCCCC
Q 037843 14 PIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELGPTM 92 (203)
Q Consensus 14 ~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~~~~ 92 (203)
+|+|+|....+...+...++.. |..+..........+.+....+|.|++--. .+...+ .....++......
T Consensus 2 ~ilivdd~~~~~~~l~~~L~~~------~~~v~~~~~~~~~~~~~~~~~~d~illd~~--~~~~~g~~~~~~l~~~~~~~ 73 (222)
T PRK10643 2 KILIVEDDTLLLQGLILALQTE------GYACDCASTAREAEALLESGHYSLVVLDLG--LPDEDGLHLLRRWRQKKYTL 73 (222)
T ss_pred EEEEEeCCHHHHHHHHHHHHHC------CCEEEEeCCHHHHHHHHHhCCCCEEEEECC--CCCCCHHHHHHHHHhcCCCC
Confidence 6899998877777888888877 877654322111122233336888877322 122122 2234444434568
Q ss_pred cee
Q 037843 93 PLF 95 (203)
Q Consensus 93 Pil 95 (203)
|++
T Consensus 74 pii 76 (222)
T PRK10643 74 PVL 76 (222)
T ss_pred cEE
Confidence 888
No 216
>PRK09191 two-component response regulator; Provisional
Probab=69.90 E-value=30 Score=27.37 Aligned_cols=78 Identities=17% Similarity=0.243 Sum_probs=44.2
Q ss_pred CCCCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCC-cccHHHHhccCCCEEEECCCCCCCC-Ccc-hHHHHH
Q 037843 9 KNDKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRND-ELTVAELKRKKPRGVVISPGPGAPQ-ESG-ISFRTV 85 (203)
Q Consensus 9 ~~~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~-~~~~~~l~~~~~dgiil~GG~~~~~-~~~-~~~~~i 85 (203)
.....+|+|+|....+...+...++.. |..+.....+ ....+.+....+|.||+--. .+. ..+ ...+.+
T Consensus 134 ~~~~~~~liidd~~~~~~~l~~~L~~~------~~~~~~~~~~~~~~l~~l~~~~~dlvi~d~~--~~~~~~g~e~l~~l 205 (261)
T PRK09191 134 RQVATRVLIIEDEPIIAMDLEQLVESL------GHRVTGIARTRAEAVALAKKTRPGLILADIQ--LADGSSGIDAVNDI 205 (261)
T ss_pred ccCCCeEEEEcCcHHHHHHHHHHHhcC------CCEEEEEECCHHHHHHHHhccCCCEEEEecC--CCCCCCHHHHHHHH
Confidence 344568999998877777788888777 7776522222 11123333346899988332 121 111 223334
Q ss_pred HHhCCCCcee
Q 037843 86 LELGPTMPLF 95 (203)
Q Consensus 86 ~~~~~~~Pil 95 (203)
+... .+|++
T Consensus 206 ~~~~-~~pii 214 (261)
T PRK09191 206 LKTF-DVPVI 214 (261)
T ss_pred HHhC-CCCEE
Confidence 4333 78998
No 217
>COG0716 FldA Flavodoxins [Energy production and conversion]
Probab=69.06 E-value=43 Score=24.60 Aligned_cols=73 Identities=11% Similarity=0.105 Sum_probs=37.9
Q ss_pred CCcEEEE-eCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCc-chHHHHHHHh
Q 037843 12 KNPIVVI-DNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQES-GISFRTVLEL 88 (203)
Q Consensus 12 ~~~i~ii-d~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~-~~~~~~i~~~ 88 (203)
|++|+|+ ....+++..+++.+++..- +-|+.+.+........... ..+|-+++.-++....+. ..+.+.+..+
T Consensus 1 M~ki~Ivy~S~tGnTe~vA~~i~~~l~--~~~~~~~~~~~~~~~~~~~--~~~d~~~~g~~t~~~ge~~~~~~~f~~~~ 75 (151)
T COG0716 1 MMKILIVYGSRTGNTEKVAEIIAEELG--ADGFEVDIDIRPGIKDDLL--ESYDELLLGTPTWGAGELPDDWYDFIEEL 75 (151)
T ss_pred CCeEEEEEEcCCCcHHHHHHHHHHHhc--cCCceEEEeecCCcchhhh--ccCCEEEEEeCCCCCCcCCccHHHHHHHh
Confidence 4667666 5556788888888877531 1144453333221222222 357888884443332222 2445555554
No 218
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=68.69 E-value=42 Score=24.63 Aligned_cols=76 Identities=17% Similarity=0.305 Sum_probs=42.2
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELGP 90 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~~ 90 (203)
+.+|+|++........+.+.++.. |..+............+....+|.+++--.. +...+ .....++....
T Consensus 3 ~~~iliv~~~~~~~~~l~~~l~~~------~~~v~~~~~~~~~~~~~~~~~~d~ii~d~~~--~~~~~~~~~~~l~~~~~ 74 (202)
T PRK09390 3 KGVVHVVDDDEAMRDSLAFLLDSA------GFEVRLFESAQAFLDALPGLRFGCVVTDVRM--PGIDGIELLRRLKARGS 74 (202)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHC------CCeEEEeCCHHHHHHHhccCCCCEEEEeCCC--CCCcHHHHHHHHHhcCC
Confidence 467999998777777788888777 7776543211111122223357888773221 11111 23444554445
Q ss_pred CCcee
Q 037843 91 TMPLF 95 (203)
Q Consensus 91 ~~Pil 95 (203)
..|++
T Consensus 75 ~~~ii 79 (202)
T PRK09390 75 PLPVI 79 (202)
T ss_pred CCCEE
Confidence 68887
No 219
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=68.68 E-value=35 Score=24.95 Aligned_cols=77 Identities=13% Similarity=0.061 Sum_probs=44.3
Q ss_pred CcEEEE----eCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHh----ccCCCEEEECCCCCCCC-CcchHHH
Q 037843 13 NPIVVI----DNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELK----RKKPRGVVISPGPGAPQ-ESGISFR 83 (203)
Q Consensus 13 ~~i~ii----d~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~----~~~~dgiil~GG~~~~~-~~~~~~~ 83 (203)
++|++- |.++--...+..+++.. |+++..+-.+ .+++++. ..++|.|.+|--.+... ....+.+
T Consensus 4 ~~vl~~~~~gD~H~lG~~iv~~~lr~~------G~eVi~LG~~-vp~e~i~~~a~~~~~d~V~lS~~~~~~~~~~~~~~~ 76 (137)
T PRK02261 4 KTVVLGVIGADCHAVGNKILDRALTEA------GFEVINLGVM-TSQEEFIDAAIETDADAILVSSLYGHGEIDCRGLRE 76 (137)
T ss_pred CEEEEEeCCCChhHHHHHHHHHHHHHC------CCEEEECCCC-CCHHHHHHHHHHcCCCEEEEcCccccCHHHHHHHHH
Confidence 455555 44443345566788887 9999877654 5555554 34789999976443211 1222344
Q ss_pred HHHHh-CCCCceee
Q 037843 84 TVLEL-GPTMPLFC 96 (203)
Q Consensus 84 ~i~~~-~~~~PilC 96 (203)
.+++. ..++++++
T Consensus 77 ~L~~~~~~~~~i~v 90 (137)
T PRK02261 77 KCIEAGLGDILLYV 90 (137)
T ss_pred HHHhcCCCCCeEEE
Confidence 45543 34566664
No 220
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=68.32 E-value=38 Score=24.47 Aligned_cols=78 Identities=10% Similarity=-0.012 Sum_probs=36.7
Q ss_pred cEEEE-eCCchHHHHHHHHHHHhhhhhcCCceEE-EEeCCcc--cHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHh
Q 037843 14 PIVVI-DNYDSFTYNLCQYMGELELELSQGYHFE-VYRNDEL--TVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLEL 88 (203)
Q Consensus 14 ~i~ii-d~~~~~~~~l~~~l~~~~~~~~~g~~~~-v~~~~~~--~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~ 88 (203)
+++|| ....+++..+++.+++... ..|..+. +.+..+. ...++. ++|.|||..+........ .+..++..+
T Consensus 2 ~i~IiY~S~tGnTe~iA~~ia~~l~--~~g~~v~~~~~~~~~~~~~~~~~--~~d~iilgs~t~~~g~~p~~~~~fl~~l 77 (140)
T TIGR01754 2 RILLAYLSLSGNTEEVAFMIQDYLQ--KDGHEVDILHRIGTLADAPLDPE--NYDLVFLGTWTWERGRTPDEMKDFIAEL 77 (140)
T ss_pred eEEEEEECCCChHHHHHHHHHHHHh--hCCeeEEecccccccccCcCChh--hCCEEEEEcCeeCCCcCCHHHHHHHHHh
Confidence 45554 5555678888877755421 2266665 2221111 111222 579998833221122222 344555554
Q ss_pred -CCCCcee
Q 037843 89 -GPTMPLF 95 (203)
Q Consensus 89 -~~~~Pil 95 (203)
..++.+.
T Consensus 78 ~~~~k~~a 85 (140)
T TIGR01754 78 GYKPSNVA 85 (140)
T ss_pred cccCCEEE
Confidence 2344443
No 221
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=68.06 E-value=40 Score=23.88 Aligned_cols=47 Identities=11% Similarity=0.131 Sum_probs=30.6
Q ss_pred eCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEEC
Q 037843 19 DNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVIS 69 (203)
Q Consensus 19 d~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~ 69 (203)
....+++..+++++.+... ..|+.+.+++..+.+..++. ++|.||+.
T Consensus 6 ~S~tGnT~~~A~~i~~~~~--~~g~~v~~~~~~~~~~~~l~--~~d~iilg 52 (140)
T TIGR01753 6 ASMTGNTEEMANIIAEGLK--EAGAEVDLLEVADADAEDLL--SYDAVLLG 52 (140)
T ss_pred ECCCcHHHHHHHHHHHHHH--hcCCeEEEEEcccCCHHHHh--cCCEEEEE
Confidence 4455677777776655421 12778888776555666766 57999983
No 222
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=68.06 E-value=29 Score=27.26 Aligned_cols=29 Identities=24% Similarity=0.421 Sum_probs=17.3
Q ss_pred CceEEEEeCCcccH-------HHHhccCCCEEEECCC
Q 037843 42 GYHFEVYRNDELTV-------AELKRKKPRGVVISPG 71 (203)
Q Consensus 42 g~~~~v~~~~~~~~-------~~l~~~~~dgiil~GG 71 (203)
|+.+.+...+ .+. +.+...++||||+.+.
T Consensus 29 g~~~~~~~~~-~~~~~~~~~~~~~~~~~vdgiii~~~ 64 (267)
T cd06284 29 GYGVLLGDTR-SDPEREQEYLDLLRRKQADGIILLDG 64 (267)
T ss_pred CCeEEEecCC-CChHHHHHHHHHHHHcCCCEEEEecC
Confidence 8888776543 222 1222347999999654
No 223
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=68.05 E-value=16 Score=29.29 Aligned_cols=74 Identities=20% Similarity=0.340 Sum_probs=46.7
Q ss_pred CcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHH-hCC
Q 037843 13 NPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLE-LGP 90 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~-~~~ 90 (203)
++|+||+-.......+..+|+.. |..+........-.+.+... ||.||+== +.|.-.+ .+...+++ ...
T Consensus 1 ~~ILiveDd~~i~~~l~~~L~~~------g~~v~~~~~~~~a~~~~~~~-~dlviLD~--~lP~~dG~~~~~~iR~~~~~ 71 (229)
T COG0745 1 MRILLVEDDPELAELLKEYLEEE------GYEVDVAADGEEALEAAREQ-PDLVLLDL--MLPDLDGLELCRRLRAKKGS 71 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHC------CCEEEEECCHHHHHHHHhcC-CCEEEEEC--CCCCCCHHHHHHHHHhhcCC
Confidence 47999988877888899999998 99988764321122333334 99999821 1232233 24555664 245
Q ss_pred CCcee
Q 037843 91 TMPLF 95 (203)
Q Consensus 91 ~~Pil 95 (203)
..||+
T Consensus 72 ~~PIi 76 (229)
T COG0745 72 GPPII 76 (229)
T ss_pred CCcEE
Confidence 67787
No 224
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=67.82 E-value=37 Score=26.64 Aligned_cols=66 Identities=15% Similarity=0.203 Sum_probs=33.0
Q ss_pred chHHHHHHHHHHHhhhhhcCCceEEEE-eCCcccH-------HHHhccCCCEEEECCCCCCCCCcchHHHHHHHh-CCCC
Q 037843 22 DSFTYNLCQYMGELELELSQGYHFEVY-RNDELTV-------AELKRKKPRGVVISPGPGAPQESGISFRTVLEL-GPTM 92 (203)
Q Consensus 22 ~~~~~~l~~~l~~~~~~~~~g~~~~v~-~~~~~~~-------~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~~-~~~~ 92 (203)
+.|...+.+.+++..++. |+.+.++ +.. .+. +.+...++||||+.+... ......++++ ..++
T Consensus 10 ~~~~~~~~~g~~~~a~~~--g~~~~~~~~~~-~d~~~q~~~i~~~i~~~~d~Iiv~~~~~-----~~~~~~l~~~~~~gI 81 (257)
T PF13407_consen 10 NPFWQQVIKGAKAAAKEL--GYEVEIVFDAQ-NDPEEQIEQIEQAISQGVDGIIVSPVDP-----DSLAPFLEKAKAAGI 81 (257)
T ss_dssp SHHHHHHHHHHHHHHHHH--TCEEEEEEEST-TTHHHHHHHHHHHHHTTESEEEEESSST-----TTTHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHHHHHc--CCEEEEeCCCC-CCHHHHHHHHHHHHHhcCCEEEecCCCH-----HHHHHHHHHHhhcCc
Confidence 334444444443332222 8998885 443 222 222334899999965432 2222334442 3567
Q ss_pred cee
Q 037843 93 PLF 95 (203)
Q Consensus 93 Pil 95 (203)
|++
T Consensus 82 pvv 84 (257)
T PF13407_consen 82 PVV 84 (257)
T ss_dssp EEE
T ss_pred eEE
Confidence 776
No 225
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=67.81 E-value=23 Score=24.44 Aligned_cols=54 Identities=13% Similarity=0.080 Sum_probs=26.9
Q ss_pred cEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECC
Q 037843 14 PIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISP 70 (203)
Q Consensus 14 ~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~G 70 (203)
+|+++-..+--+..+++.+++...+ .|.++++........++.. .++|.|+++|
T Consensus 2 ~Ill~C~~GaSSs~la~km~~~a~~--~gi~~~i~a~~~~e~~~~~-~~~Dvill~P 55 (99)
T cd05565 2 NVLVLCAGGGTSGLLANALNKGAKE--RGVPLEAAAGAYGSHYDMI-PDYDLVILAP 55 (99)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH--CCCcEEEEEeeHHHHHHhc-cCCCEEEEcC
Confidence 4666654432344455555544222 2888877643212222222 2689777744
No 226
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=67.62 E-value=19 Score=27.47 Aligned_cols=75 Identities=15% Similarity=0.200 Sum_probs=42.6
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELGP 90 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~~ 90 (203)
..+|++||........+.+.++.. |..+............+....+|.+++.-. .+...+ .+...++.. .
T Consensus 2 ~~~iLlv~d~~~~~~~l~~~l~~~------~~~v~~~~~~~~~~~~~~~~~~dlvild~~--l~~~~g~~~~~~lr~~-~ 72 (221)
T PRK10766 2 SYHILVVEDEPVTRARLQGYFEQE------GYTVSEAASGAGMREIMQNQHVDLILLDIN--LPGEDGLMLTRELRSR-S 72 (221)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHc------CCEEEEECCHHHHHHHHhcCCCCEEEEeCC--CCCCCHHHHHHHHHhC-C
Confidence 467999998877777788888877 877654432111112233336899888432 122222 233444443 3
Q ss_pred CCcee
Q 037843 91 TMPLF 95 (203)
Q Consensus 91 ~~Pil 95 (203)
..|++
T Consensus 73 ~~~ii 77 (221)
T PRK10766 73 TVGII 77 (221)
T ss_pred CCCEE
Confidence 57877
No 227
>PRK13856 two-component response regulator VirG; Provisional
Probab=66.71 E-value=18 Score=28.32 Aligned_cols=74 Identities=15% Similarity=0.232 Sum_probs=41.3
Q ss_pred CcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCCC
Q 037843 13 NPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELGPT 91 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~~~ 91 (203)
++|++++........+...++.. |..+..........+.+....+|.||+--. .+...+ .+...++.. ..
T Consensus 2 ~~ILived~~~~~~~l~~~L~~~------~~~v~~~~~~~~~~~~~~~~~~dlvi~d~~--l~~~~g~~l~~~i~~~-~~ 72 (241)
T PRK13856 2 KHVLVIDDDVAMRHLIVEYLTIH------AFKVTAVADSQQFNRVLASETVDVVVVDLN--LGREDGLEIVRSLATK-SD 72 (241)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHc------CCEEEEECCHHHHHHHHhhCCCCEEEEeCC--CCCCCHHHHHHHHHhc-CC
Confidence 57999998877777788888777 877655422111112233336888888321 122222 123333332 35
Q ss_pred Ccee
Q 037843 92 MPLF 95 (203)
Q Consensus 92 ~Pil 95 (203)
.|++
T Consensus 73 ~pii 76 (241)
T PRK13856 73 VPII 76 (241)
T ss_pred CcEE
Confidence 7888
No 228
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=66.15 E-value=18 Score=28.10 Aligned_cols=51 Identities=18% Similarity=0.279 Sum_probs=32.8
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEE
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVI 68 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil 68 (203)
|.+|+|++........+...++.. |..+............+....+|.+|+
T Consensus 1 m~~iLivedd~~~~~~l~~~L~~~------g~~v~~~~~~~~~l~~~~~~~~dlvil 51 (240)
T PRK10701 1 MNKIVFVEDDAEVGSLIAAYLAKH------DIDVTVEPRGDRAEATILREQPDLVLL 51 (240)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHc------CCEEEEeCCHHHHHHHHhhCCCCEEEE
Confidence 357999998877777888888877 877655422111112233346898888
No 229
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=65.99 E-value=31 Score=25.08 Aligned_cols=78 Identities=19% Similarity=0.165 Sum_probs=43.3
Q ss_pred CCcEEEE----eCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHH----hccCCCEEEECCCCCCCC-CcchHH
Q 037843 12 KNPIVVI----DNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAEL----KRKKPRGVVISPGPGAPQ-ESGISF 82 (203)
Q Consensus 12 ~~~i~ii----d~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l----~~~~~dgiil~GG~~~~~-~~~~~~ 82 (203)
++||++- |.++--...+...|+.. |++|.....+ .+++++ ...++|.|.+|+-.+... ....+.
T Consensus 2 ~~~v~~a~~g~D~Hd~g~~iv~~~l~~~------GfeVi~lg~~-~s~e~~v~aa~e~~adii~iSsl~~~~~~~~~~~~ 74 (132)
T TIGR00640 2 RPRILVAKMGQDGHDRGAKVIATAYADL------GFDVDVGPLF-QTPEEIARQAVEADVHVVGVSSLAGGHLTLVPALR 74 (132)
T ss_pred CCEEEEEeeCCCccHHHHHHHHHHHHhC------CcEEEECCCC-CCHHHHHHHHHHcCCCEEEEcCchhhhHHHHHHHH
Confidence 3555555 45544445566788887 9998766544 444443 234789999977543211 122234
Q ss_pred HHHHHhC-CCCceee
Q 037843 83 RTVLELG-PTMPLFC 96 (203)
Q Consensus 83 ~~i~~~~-~~~PilC 96 (203)
+.+++.. .++++++
T Consensus 75 ~~L~~~g~~~i~viv 89 (132)
T TIGR00640 75 KELDKLGRPDILVVV 89 (132)
T ss_pred HHHHhcCCCCCEEEE
Confidence 4444432 2456664
No 230
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=65.88 E-value=35 Score=28.72 Aligned_cols=37 Identities=19% Similarity=0.339 Sum_probs=23.6
Q ss_pred HHHHHHHHhhhhhcCCceEEEEeCCcccHH-------HHhccCCCEEEECC
Q 037843 27 NLCQYMGELELELSQGYHFEVYRNDELTVA-------ELKRKKPRGVVISP 70 (203)
Q Consensus 27 ~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~-------~l~~~~~dgiil~G 70 (203)
.+.+.+++. |+.+.+...+. +.+ .+....+||||+.|
T Consensus 79 gi~~~~~~~------gy~~~l~~~~~-~~~~e~~~~~~l~~~~vdGiIi~~ 122 (333)
T COG1609 79 GIEEAAREA------GYSLLLANTDD-DPEKEREYLETLLQKRVDGLILLG 122 (333)
T ss_pred HHHHHHHHc------CCEEEEECCCC-CHHHHHHHHHHHHHcCCCEEEEec
Confidence 344555555 99988876543 222 23344899999988
No 231
>smart00448 REC cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.
Probab=65.83 E-value=18 Score=19.03 Aligned_cols=49 Identities=22% Similarity=0.328 Sum_probs=28.2
Q ss_pred cEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEE
Q 037843 14 PIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVI 68 (203)
Q Consensus 14 ~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil 68 (203)
++++++........+.+.++.. |..+............+....+|.+++
T Consensus 2 ~i~i~~~~~~~~~~~~~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~vi~ 50 (55)
T smart00448 2 RILVVDDDPLLRELLKALLERE------GYEVDEATDGEEALELLKEEKPDLILL 50 (55)
T ss_pred eEEEEcCCHHHHHHHHHHHhhc------CcEEEEeCCHHHHHHHHHhcCCCEEEE
Confidence 5788887766667777777776 777544322111122232234677776
No 232
>PRK09271 flavodoxin; Provisional
Probab=65.52 E-value=54 Score=24.38 Aligned_cols=54 Identities=15% Similarity=0.113 Sum_probs=28.6
Q ss_pred cEEEE-eCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHH--hccCCCEEEEC
Q 037843 14 PIVVI-DNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAEL--KRKKPRGVVIS 69 (203)
Q Consensus 14 ~i~ii-d~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l--~~~~~dgiil~ 69 (203)
+|+|+ ....+++..+++.+.+... ..|+.+.+.........++ ...++|+|||.
T Consensus 2 kv~IvY~S~tGnTe~~A~~ia~~l~--~~g~~v~~~~~~~~~~~~~~~~~~~~d~vilg 58 (160)
T PRK09271 2 RILLAYASLSGNTREVAREIEERCE--EAGHEVDWVETDVQTLAEYPLDPEDYDLYLLG 58 (160)
T ss_pred eEEEEEEcCCchHHHHHHHHHHHHH--hCCCeeEEEecccccccccccCcccCCEEEEE
Confidence 45555 5555677777766654321 1277776654332222221 11257999983
No 233
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=64.58 E-value=33 Score=28.29 Aligned_cols=71 Identities=14% Similarity=0.242 Sum_probs=38.0
Q ss_pred CcEEEEeCCch-H----HHHHHHHHHHhhhhhcCCceEEEEeCCc-----ccH---HHHhccCCCEEEECCCCCCCCCcc
Q 037843 13 NPIVVIDNYDS-F----TYNLCQYMGELELELSQGYHFEVYRNDE-----LTV---AELKRKKPRGVVISPGPGAPQESG 79 (203)
Q Consensus 13 ~~i~iid~~~~-~----~~~l~~~l~~~~~~~~~g~~~~v~~~~~-----~~~---~~l~~~~~dgiil~GG~~~~~~~~ 79 (203)
+||+|+-+... - ...+.++|++. |..+.+..... ... .++...++|.+|..||.|.
T Consensus 1 m~v~iv~~~~k~~~~~~~~~I~~~L~~~------g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~iGGDGT----- 69 (277)
T PRK03708 1 MRFGIVARRDKEEALKLAYRVYDFLKVS------GYEVVVDSETYEHLPEFSEEDVLPLEEMDVDFIIAIGGDGT----- 69 (277)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHC------CCEEEEecchhhhcCcccccccccccccCCCEEEEEeCcHH-----
Confidence 35777755432 2 23355566666 88877653210 000 1222225799999999664
Q ss_pred hHHHHHHHhCCCCcee
Q 037843 80 ISFRTVLELGPTMPLF 95 (203)
Q Consensus 80 ~~~~~i~~~~~~~Pil 95 (203)
+.+.++....++||+
T Consensus 70 -lL~a~~~~~~~~pi~ 84 (277)
T PRK03708 70 -ILRIEHKTKKDIPIL 84 (277)
T ss_pred -HHHHHHhcCCCCeEE
Confidence 234444224567777
No 234
>PRK13054 lipid kinase; Reviewed
Probab=64.01 E-value=33 Score=28.42 Aligned_cols=59 Identities=19% Similarity=0.010 Sum_probs=32.0
Q ss_pred CCCcEEEEeCCch-HHHH---HHHHHHHhhhhhcCCceEEEEeCCc-ccHHH----HhccCCCEEEECCCCCCC
Q 037843 11 DKNPIVVIDNYDS-FTYN---LCQYMGELELELSQGYHFEVYRNDE-LTVAE----LKRKKPRGVVISPGPGAP 75 (203)
Q Consensus 11 ~~~~i~iid~~~~-~~~~---l~~~l~~~~~~~~~g~~~~v~~~~~-~~~~~----l~~~~~dgiil~GG~~~~ 75 (203)
||+++++|-|..+ .... +.+.+++. |.++.+..... .+..+ ....++|.||+.||.|..
T Consensus 2 ~~~~~~~i~N~~~~~~~~~~~~~~~l~~~------g~~~~v~~t~~~~~a~~~a~~~~~~~~d~vvv~GGDGTl 69 (300)
T PRK13054 2 TFPKSLLILNGKSAGNEELREAVGLLREE------GHTLHVRVTWEKGDAARYVEEALALGVATVIAGGGDGTI 69 (300)
T ss_pred CCceEEEEECCCccchHHHHHHHHHHHHc------CCEEEEEEecCCCcHHHHHHHHHHcCCCEEEEECCccHH
Confidence 4567766655443 2222 33445454 77776654321 12222 222368999999998863
No 235
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=62.96 E-value=24 Score=26.99 Aligned_cols=75 Identities=13% Similarity=0.236 Sum_probs=41.6
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELGP 90 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~~ 90 (203)
|.+|+|+|........+.+.++.. |..+............+....+|.||+--.. +...+ .....+++. .
T Consensus 1 ~~~iLivdd~~~~~~~l~~~L~~~------g~~v~~~~~~~~~~~~~~~~~~dlvild~~l--~~~~g~~~~~~lr~~-~ 71 (225)
T PRK10529 1 MTNVLIVEDEQAIRRFLRTALEGD------GMRVFEAETLQRGLLEAATRKPDLIILDLGL--PDGDGIEFIRDLRQW-S 71 (225)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHC------CCEEEEeCCHHHHHHHHhcCCCCEEEEeCCC--CCCCHHHHHHHHHcC-C
Confidence 357999998877777888888877 8776543211111122233358888873221 11122 123344432 4
Q ss_pred CCcee
Q 037843 91 TMPLF 95 (203)
Q Consensus 91 ~~Pil 95 (203)
..|++
T Consensus 72 ~~pvi 76 (225)
T PRK10529 72 AIPVI 76 (225)
T ss_pred CCCEE
Confidence 57887
No 236
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=62.55 E-value=73 Score=26.27 Aligned_cols=51 Identities=24% Similarity=0.166 Sum_probs=31.3
Q ss_pred CCcEEEEeCCchH--------HHHHHHHHHHhhhhhcCCceEEEEeCCc-ccHHHHhccCCCEEEE
Q 037843 12 KNPIVVIDNYDSF--------TYNLCQYMGELELELSQGYHFEVYRNDE-LTVAELKRKKPRGVVI 68 (203)
Q Consensus 12 ~~~i~iid~~~~~--------~~~l~~~l~~~~~~~~~g~~~~v~~~~~-~~~~~l~~~~~dgiil 68 (203)
+++|+||-.+.|- ...+.++|++. |.++..+..+. .....+...++|.++.
T Consensus 3 ~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~------g~~~~~~~~~~~~~~~~l~~~~~d~vf~ 62 (296)
T PRK14569 3 NEKIVVLYGGDSPEREVSLKSGKAVLDSLISQ------GYDAVGVDASGKELVAKLLELKPDKCFV 62 (296)
T ss_pred CcEEEEEeCCCCCchHhHHHHHHHHHHHHHHc------CCEEEEEcCCchhHHHHhhccCCCEEEE
Confidence 5689999666543 23466777777 99987764331 1133444456887665
No 237
>PRK06849 hypothetical protein; Provisional
Probab=62.51 E-value=49 Score=28.40 Aligned_cols=54 Identities=13% Similarity=0.249 Sum_probs=34.9
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGP 72 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~ 72 (203)
+++|+|+.......-.+++.|.+. |.++.++............ ..|..+..++|
T Consensus 4 ~~~VLI~G~~~~~~l~iar~l~~~------G~~Vi~~d~~~~~~~~~s~-~~d~~~~~p~p 57 (389)
T PRK06849 4 KKTVLITGARAPAALELARLFHNA------GHTVILADSLKYPLSRFSR-AVDGFYTIPSP 57 (389)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHC------CCEEEEEeCCchHHHHHHH-hhhheEEeCCC
Confidence 578999987766667899999998 9999887654222221111 24665554444
No 238
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=62.41 E-value=81 Score=27.50 Aligned_cols=56 Identities=21% Similarity=0.326 Sum_probs=36.7
Q ss_pred cEEEE-eCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhc--cCCCEEEECCCC
Q 037843 14 PIVVI-DNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKR--KKPRGVVISPGP 72 (203)
Q Consensus 14 ~i~ii-d~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~--~~~dgiil~GG~ 72 (203)
+|+|+ +.-.+++..+++++.+-.+ ..|+.++++.....+.+++.. .+.+|+++ |+|
T Consensus 248 ~V~l~Y~smyg~T~~ma~aiaegl~--~~gv~v~~~~~~~~~~~eI~~~i~~a~~~vv-GsP 306 (388)
T COG0426 248 KVDLIYDSMYGNTEKMAQAIAEGLM--KEGVDVEVINLEDADPSEIVEEILDAKGLVV-GSP 306 (388)
T ss_pred eEEEEEecccCCHHHHHHHHHHHhh--hcCCceEEEEcccCCHHHHHHHHhhcceEEE-ecC
Confidence 67777 4344668887776644321 228999888765556666653 26799999 554
No 239
>PF13941 MutL: MutL protein
Probab=62.34 E-value=69 Score=28.60 Aligned_cols=84 Identities=20% Similarity=0.258 Sum_probs=45.2
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCccc---HHHHhccCCCEEEECCCCCCCCCcch--HHHHHH
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELT---VAELKRKKPRGVVISPGPGAPQESGI--SFRTVL 86 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~---~~~l~~~~~dgiil~GG~~~~~~~~~--~~~~i~ 86 (203)
..|++++-.-.+.+ .++.++. +++-|+.+.-+-....+ .+++...++|.|+|+||...-+..-. ..+.+-
T Consensus 76 GLrmvv~Glv~~~T---a~AAk~A--AlgAGA~V~~v~s~~l~~~~l~~i~~~~PDiILLaGGtDgG~~~~il~nA~~La 150 (457)
T PF13941_consen 76 GLRMVVIGLVPDLT---AEAAKRA--ALGAGARVLQVYSYELTEEDLEEIREIRPDIILLAGGTDGGNKEVILHNAEMLA 150 (457)
T ss_pred cceEEEEecCHHHH---HHHHHHH--HhcCCcEEEEEeccCCCHHHHHHHhccCCCEEEEeCCccCCchHHHHHHHHHHH
Confidence 46677776544333 2333333 22237776544333333 45566679999999999754222111 133444
Q ss_pred HhCCCCceeehhHH
Q 037843 87 ELGPTMPLFCMGLK 100 (203)
Q Consensus 87 ~~~~~~PilClG~Q 100 (203)
+..-++||+.-|-+
T Consensus 151 ~~~~~~pVIyAGN~ 164 (457)
T PF13941_consen 151 EANLRIPVIYAGNK 164 (457)
T ss_pred hCCCCCcEEEECCH
Confidence 44567899833433
No 240
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=62.26 E-value=70 Score=26.06 Aligned_cols=56 Identities=16% Similarity=0.298 Sum_probs=28.4
Q ss_pred cEEEE--eCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCc-ccHH----HHhccCCCEEEECCC
Q 037843 14 PIVVI--DNYDSFTYNLCQYMGELELELSQGYHFEVYRNDE-LTVA----ELKRKKPRGVVISPG 71 (203)
Q Consensus 14 ~i~ii--d~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~-~~~~----~l~~~~~dgiil~GG 71 (203)
+|.|| +....|-..+.+.+++.. ...|+.+.+...+. ...+ .+...++||||+++.
T Consensus 3 ~IGvivp~~~npff~~ii~gIe~~a--~~~Gy~l~l~~t~~~~~~e~~i~~l~~~~vDGiI~~s~ 65 (279)
T PF00532_consen 3 TIGVIVPDISNPFFAEIIRGIEQEA--REHGYQLLLCNTGDDEEKEEYIELLLQRRVDGIILASS 65 (279)
T ss_dssp EEEEEESSSTSHHHHHHHHHHHHHH--HHTTCEEEEEEETTTHHHHHHHHHHHHTTSSEEEEESS
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHH--HHcCCEEEEecCCCchHHHHHHHHHHhcCCCEEEEecc
Confidence 45555 333344444444333321 11299987765432 1111 233458999999843
No 241
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=62.09 E-value=36 Score=28.41 Aligned_cols=85 Identities=13% Similarity=0.142 Sum_probs=49.4
Q ss_pred CCcEEEEeCCchH-HHHHHHHHHHhhhhhcCCceEEEEeCC---cccHHHH-------hcc----CCCEEEECCCCCCCC
Q 037843 12 KNPIVVIDNYDSF-TYNLCQYMGELELELSQGYHFEVYRND---ELTVAEL-------KRK----KPRGVVISPGPGAPQ 76 (203)
Q Consensus 12 ~~~i~iid~~~~~-~~~l~~~l~~~~~~~~~g~~~~v~~~~---~~~~~~l-------~~~----~~dgiil~GG~~~~~ 76 (203)
..+|+||-..++- .+-+.+.++.. ...+++.++|.. +..+.++ ... .+|.|||.=|.|+..
T Consensus 14 p~~I~vITs~~gAa~~D~~~~~~~r----~~~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~e 89 (319)
T PF02601_consen 14 PKRIAVITSPTGAAIQDFLRTLKRR----NPIVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGSIE 89 (319)
T ss_pred CCEEEEEeCCchHHHHHHHHHHHHh----CCCcEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCCCChH
Confidence 4689999766543 23355555444 225667766642 1122222 111 489999988888765
Q ss_pred CcchH--HHHHHH-hCCCCcee-ehhHH
Q 037843 77 ESGIS--FRTVLE-LGPTMPLF-CMGLK 100 (203)
Q Consensus 77 ~~~~~--~~~i~~-~~~~~Pil-ClG~Q 100 (203)
|-..+ ..+.++ +.-.+||+ --||.
T Consensus 90 DL~~FN~e~varai~~~~~PvisaIGHe 117 (319)
T PF02601_consen 90 DLWAFNDEEVARAIAASPIPVISAIGHE 117 (319)
T ss_pred HhcccChHHHHHHHHhCCCCEEEecCCC
Confidence 43221 233444 24569999 99998
No 242
>PLN03029 type-a response regulator protein; Provisional
Probab=62.04 E-value=54 Score=25.78 Aligned_cols=33 Identities=6% Similarity=0.056 Sum_probs=25.8
Q ss_pred CCCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEE
Q 037843 10 NDKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVY 48 (203)
Q Consensus 10 ~~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~ 48 (203)
..+.+|+|+|........+.+.|+.. |+.+...
T Consensus 6 ~~~~~VLiVdd~~~~~~~l~~~L~~~------g~~v~~a 38 (222)
T PLN03029 6 ESQFHVLAVDDSLIDRKLIEKLLKTS------SYQVTTV 38 (222)
T ss_pred CCCccEEEEeCCHHHHHHHHHHHHHc------CceEEEE
Confidence 34688999998777777788888887 8887654
No 243
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=61.97 E-value=67 Score=25.17 Aligned_cols=38 Identities=18% Similarity=0.347 Sum_probs=23.1
Q ss_pred HHHHHHHHhhhhhcCCceEEEEeCCcccH-------HHHhccCCCEEEECCC
Q 037843 27 NLCQYMGELELELSQGYHFEVYRNDELTV-------AELKRKKPRGVVISPG 71 (203)
Q Consensus 27 ~l~~~l~~~~~~~~~g~~~~v~~~~~~~~-------~~l~~~~~dgiil~GG 71 (203)
.+.+++++. |+.+.++.... +. +.+...++||||+.+.
T Consensus 20 gi~~~~~~~------g~~~~~~~~~~-~~~~~~~~~~~l~~~~vdgiIi~~~ 64 (265)
T cd06299 20 AIQDAASAA------GYSTIIGNSDE-NPETENRYLDNLLSQRVDGIIVVPH 64 (265)
T ss_pred HHHHHHHHc------CCEEEEEeCCC-CHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 344555555 89888775431 22 1233347999999875
No 244
>PF09075 STb_secrete: Heat-stable enterotoxin B, secretory; InterPro: IPR015160 Members of this family assume a helical secondary structure, with two alpha helices forming a disulphide cross-linked alpha-helical hairpin. The disulphide bonds are crucial for the toxic activity of the protein, and are required for maintenance of the tertiary structure, and subsequent interaction with the particulate form of guanylate cyclase, increasing cyclic GMP levels within the host intestinal epithelial cells []. ; PDB: 1EHS_A.
Probab=61.85 E-value=2.7 Score=23.86 Aligned_cols=12 Identities=25% Similarity=0.490 Sum_probs=9.4
Q ss_pred ehhHHHHHHHhC
Q 037843 96 CMGLKCIGEALE 107 (203)
Q Consensus 96 ClG~Qlla~a~g 107 (203)
|||.|+|..+-|
T Consensus 36 cfgaqimvaakg 47 (48)
T PF09075_consen 36 CFGAQIMVAAKG 47 (48)
T ss_dssp TTTTHHHHTTT-
T ss_pred ccchhhhhhccc
Confidence 999999986544
No 245
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=61.58 E-value=36 Score=23.61 Aligned_cols=42 Identities=12% Similarity=0.041 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhhhhhcCCceEEEEeCCcccHH----HHhccCCCEEEECCCCC
Q 037843 25 TYNLCQYMGELELELSQGYHFEVYRNDELTVA----ELKRKKPRGVVISPGPG 73 (203)
Q Consensus 25 ~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~----~l~~~~~dgiil~GG~~ 73 (203)
..++..++++. |.++..+..+ .+.+ .+...++|.|.+|....
T Consensus 16 ~~~~~~~l~~~------G~~v~~l~~~-~~~~~~~~~i~~~~pdiV~iS~~~~ 61 (125)
T cd02065 16 KNIVAIALRDN------GFEVIDLGVD-VPPEEIVEAAKEEDADVVGLSALST 61 (125)
T ss_pred HHHHHHHHHHC------CCEEEEcCCC-CCHHHHHHHHHHcCCCEEEEecchH
Confidence 45567778888 9998877543 2333 33345899999976543
No 246
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=61.46 E-value=62 Score=25.10 Aligned_cols=93 Identities=15% Similarity=0.130 Sum_probs=51.8
Q ss_pred CCcEEEE----eCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHh----ccCCCEEEECCCCCCC-CCcchHH
Q 037843 12 KNPIVVI----DNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELK----RKKPRGVVISPGPGAP-QESGISF 82 (203)
Q Consensus 12 ~~~i~ii----d~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~----~~~~dgiil~GG~~~~-~~~~~~~ 82 (203)
.++|++- |.++--...+...|+.. |+++..+-.+ .+.+++. ..++|.|-+|-.-... .....+.
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~------G~~vi~lG~~-~p~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i 154 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEAN------GFEVIDLGRD-VPPEEFVEAVKEHKPDILGLSALMTTTMGGMKEVI 154 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHC------CCEEEECCCC-CCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHH
Confidence 4566655 44432245566788888 9998766543 4555543 3489999997653321 1122334
Q ss_pred HHHHHhCC--CCceeehhH---HHHHHHhCCeec
Q 037843 83 RTVLELGP--TMPLFCMGL---KCIGEALEGRLY 111 (203)
Q Consensus 83 ~~i~~~~~--~~PilClG~---Qlla~a~gg~v~ 111 (203)
+.+++... ++||++-|. +.++..+|++..
T Consensus 155 ~~lr~~~~~~~~~i~vGG~~~~~~~~~~~GaD~~ 188 (201)
T cd02070 155 EALKEAGLRDKVKVMVGGAPVNQEFADEIGADGY 188 (201)
T ss_pred HHHHHCCCCcCCeEEEECCcCCHHHHHHcCCcEE
Confidence 55555433 678872221 235556666543
No 247
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=61.37 E-value=36 Score=30.19 Aligned_cols=35 Identities=11% Similarity=0.085 Sum_probs=26.5
Q ss_pred cCCCCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEe
Q 037843 8 SKNDKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYR 49 (203)
Q Consensus 8 ~~~~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~ 49 (203)
|-+++++|||+..+ ...-.+.+.++++ |+.+..+.
T Consensus 1 ~~~~~~~vLi~~~g-eia~~ii~aa~~l------G~~~v~~~ 35 (467)
T PRK12833 1 MPSRIRKVLVANRG-EIAVRIIRAAREL------GMRTVAAC 35 (467)
T ss_pred CCCCCcEEEEECCc-HHHHHHHHHHHHc------CCeEEEEE
Confidence 45667889988875 4566788899999 99887663
No 248
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=61.15 E-value=43 Score=22.74 Aligned_cols=72 Identities=17% Similarity=0.175 Sum_probs=34.1
Q ss_pred EEEEeCCchH-HHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHh--ccCCCEEEECCCCCCCCCcchHHHHHHH-h-C
Q 037843 15 IVVIDNYDSF-TYNLCQYMGELELELSQGYHFEVYRNDELTVAELK--RKKPRGVVISPGPGAPQESGISFRTVLE-L-G 89 (203)
Q Consensus 15 i~iid~~~~~-~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~--~~~~dgiil~GG~~~~~~~~~~~~~i~~-~-~ 89 (203)
|+++ ++.+. ++.+++.+++... ..|.++.+.... ..++. ..++|.|+++|=. .. ..+.+++ . .
T Consensus 2 Il~~-Cg~G~sTS~~~~ki~~~~~--~~~~~~~v~~~~---~~~~~~~~~~~Diil~~Pqv-----~~-~~~~i~~~~~~ 69 (96)
T cd05564 2 ILLV-CSAGMSTSILVKKMKKAAE--KRGIDAEIEAVP---ESELEEYIDDADVVLLGPQV-----RY-MLDEVKKKAAE 69 (96)
T ss_pred EEEE-cCCCchHHHHHHHHHHHHH--HCCCceEEEEec---HHHHHHhcCCCCEEEEChhH-----HH-HHHHHHHHhcc
Confidence 4444 33333 3344444444321 128887776543 33332 2378988885521 11 1233333 2 3
Q ss_pred CCCceeehh
Q 037843 90 PTMPLFCMG 98 (203)
Q Consensus 90 ~~~PilClG 98 (203)
.++|+....
T Consensus 70 ~~~pv~~I~ 78 (96)
T cd05564 70 YGIPVAVID 78 (96)
T ss_pred CCCcEEEcC
Confidence 568887333
No 249
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=60.43 E-value=74 Score=25.04 Aligned_cols=29 Identities=24% Similarity=0.323 Sum_probs=17.3
Q ss_pred CceEEEEeCCcccHH-------HHhccCCCEEEECCC
Q 037843 42 GYHFEVYRNDELTVA-------ELKRKKPRGVVISPG 71 (203)
Q Consensus 42 g~~~~v~~~~~~~~~-------~l~~~~~dgiil~GG 71 (203)
|+.+.++... .+++ .+...++||||+.++
T Consensus 29 g~~~~~~~~~-~~~~~~~~~l~~~~~~~vdgii~~~~ 64 (273)
T cd06305 29 GGDLRVYDAG-GDDAKQADQIDQAIAQKVDAIIIQHG 64 (273)
T ss_pred CCEEEEECCC-CCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 8888776432 2221 122337999999653
No 250
>KOG4435 consensus Predicted lipid kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=59.91 E-value=15 Score=32.10 Aligned_cols=33 Identities=12% Similarity=0.336 Sum_probs=23.2
Q ss_pred CceEEEEeCCcc----c-HHHHhccCCCEEEECCCCCCC
Q 037843 42 GYHFEVYRNDEL----T-VAELKRKKPRGVVISPGPGAP 75 (203)
Q Consensus 42 g~~~~v~~~~~~----~-~~~l~~~~~dgiil~GG~~~~ 75 (203)
|+.|+++..|.. . .++++ ...|.|++.||.|..
T Consensus 92 G~~V~Ivktd~~gqak~l~e~~~-t~~Dii~VaGGDGT~ 129 (535)
T KOG4435|consen 92 GVQVDIVKTDNQGQAKALAEAVD-TQEDIIYVAGGDGTI 129 (535)
T ss_pred cceEEEEecCcHHHHHHHHHHhc-cCCCeEEEecCCCcH
Confidence 999999987632 1 22233 356999999998853
No 251
>PRK15479 transcriptional regulatory protein TctD; Provisional
Probab=59.45 E-value=73 Score=23.92 Aligned_cols=74 Identities=12% Similarity=0.178 Sum_probs=41.0
Q ss_pred cEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCCCC
Q 037843 14 PIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELGPTM 92 (203)
Q Consensus 14 ~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~~~~ 92 (203)
+|+++|........+.++++.. |..+..........+.+....+|.+++.-. .+...+ .....++......
T Consensus 2 ~ilivd~~~~~~~~l~~~l~~~------~~~v~~~~~~~~~~~~~~~~~~d~vild~~--~~~~~~~~~~~~i~~~~~~~ 73 (221)
T PRK15479 2 RLLLAEDNRELAHWLEKALVQN------GFAVDCVFDGLAADHLLQSEMYALAVLDIN--MPGMDGLEVLQRLRKRGQTL 73 (221)
T ss_pred eEEEEeCCHHHHHHHHHHHHHC------CCEEEEeCCHHHHHHHHhhCCCCEEEEeCC--CCCCcHHHHHHHHHhcCCCC
Confidence 6899998877777888888777 776543321111112233336898888322 111122 2334444444567
Q ss_pred cee
Q 037843 93 PLF 95 (203)
Q Consensus 93 Pil 95 (203)
|++
T Consensus 74 ~ii 76 (221)
T PRK15479 74 PVL 76 (221)
T ss_pred CEE
Confidence 887
No 252
>PRK13435 response regulator; Provisional
Probab=59.15 E-value=33 Score=24.36 Aligned_cols=52 Identities=12% Similarity=0.178 Sum_probs=32.5
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccH-HHHhccCCCEEEEC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTV-AELKRKKPRGVVIS 69 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~-~~l~~~~~dgiil~ 69 (203)
+.+|+|++........+.+.++.. |..+...-.+.... ..+....+|.+|+-
T Consensus 5 ~~~iliid~~~~~~~~l~~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~dliivd 57 (145)
T PRK13435 5 QLKVLIVEDEALIALELEKLVEEA------GHEVVGIAMSSEQAIALGRRRQPDVALVD 57 (145)
T ss_pred cceEEEEcCcHHHHHHHHHHHHhc------CCeEEEeeCCHHHHHHHhhhcCCCEEEEe
Confidence 578999998877777788888777 77754222221111 12222358999883
No 253
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=58.96 E-value=73 Score=26.78 Aligned_cols=71 Identities=11% Similarity=0.257 Sum_probs=40.1
Q ss_pred CCcEEEEeCCch-----HHHHHHHHHHHhhhhhcCCceEEEEeCCcc------------------cH-HHHhccCCCEEE
Q 037843 12 KNPIVVIDNYDS-----FTYNLCQYMGELELELSQGYHFEVYRNDEL------------------TV-AELKRKKPRGVV 67 (203)
Q Consensus 12 ~~~i~iid~~~~-----~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~------------------~~-~~l~~~~~dgii 67 (203)
+++|+|+-+... ....+.++|++. |+.+.+...... +. +++. .++|.+|
T Consensus 5 ~~~I~iv~~~~~~~~~~~~~~l~~~L~~~------g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~D~vi 77 (306)
T PRK03372 5 SRRVLLVAHTGRDEATEAARRVAKQLGDA------GIGVRVLDAEAVDLGATHPAPDDFRAMEVVDADPDAA-DGCELVL 77 (306)
T ss_pred ccEEEEEecCCCHHHHHHHHHHHHHHHHC------CCEEEEeechhhhhcccccccccccccccccchhhcc-cCCCEEE
Confidence 456888865432 123455566666 888766432100 00 1121 2479999
Q ss_pred ECCCCCCCCCcchHHHHHHHh-CCCCcee
Q 037843 68 ISPGPGAPQESGISFRTVLEL-GPTMPLF 95 (203)
Q Consensus 68 l~GG~~~~~~~~~~~~~i~~~-~~~~Pil 95 (203)
..||.|. +....+.+ ..++|||
T Consensus 78 ~lGGDGT------~L~aar~~~~~~~Pil 100 (306)
T PRK03372 78 VLGGDGT------ILRAAELARAADVPVL 100 (306)
T ss_pred EEcCCHH------HHHHHHHhccCCCcEE
Confidence 9999653 34445543 4678988
No 254
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=58.76 E-value=41 Score=26.69 Aligned_cols=38 Identities=16% Similarity=0.208 Sum_probs=22.0
Q ss_pred HHHHHHHhhhhhcCCceEEEEeCCcccHHH----HhccCCCEEEECCC
Q 037843 28 LCQYMGELELELSQGYHFEVYRNDELTVAE----LKRKKPRGVVISPG 71 (203)
Q Consensus 28 l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~----l~~~~~dgiil~GG 71 (203)
+.+.+++. |+.+.++..+...... +...++||||+.+.
T Consensus 32 i~~~~~~~------g~~~~v~~~~~~~~~~~~~~l~~~~~dgiii~~~ 73 (275)
T cd06295 32 IADALAER------GYDLLLSFVSSPDRDWLARYLASGRADGVILIGQ 73 (275)
T ss_pred HHHHHHHc------CCEEEEEeCCchhHHHHHHHHHhCCCCEEEEeCC
Confidence 44445555 8888877553221212 22247999999764
No 255
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=58.68 E-value=65 Score=28.11 Aligned_cols=76 Identities=16% Similarity=0.267 Sum_probs=43.0
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELGP 90 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~~ 90 (203)
..+|+|||........+.+.++.. |..+........-...+....+|.|++--. .+...+ .....+++...
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~------g~~v~~~~~~~~al~~l~~~~~dlillD~~--~p~~~g~~ll~~i~~~~~ 75 (457)
T PRK11361 4 INRILIVDDEDNVRRMLSTAFALQ------GFETHCANNGRTALHLFADIHPDVVLMDIR--MPEMDGIKALKEMRSHET 75 (457)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHC------CCEEEEECCHHHHHHHHhcCCCCEEEEeCC--CCCCCHHHHHHHHHhcCC
Confidence 468999998877777788888877 887654322111112233335788776321 122222 12344444445
Q ss_pred CCcee
Q 037843 91 TMPLF 95 (203)
Q Consensus 91 ~~Pil 95 (203)
.+|++
T Consensus 76 ~~pvI 80 (457)
T PRK11361 76 RTPVI 80 (457)
T ss_pred CCCEE
Confidence 67887
No 256
>PRK09483 response regulator; Provisional
Probab=58.43 E-value=57 Score=24.63 Aligned_cols=77 Identities=12% Similarity=0.169 Sum_probs=40.7
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCccc-HHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELT-VAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELG 89 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~-~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~ 89 (203)
|.+|+|+|........+.+.++... +..+...-.+... ...+....+|.||+--. .+...+ ...+.+++..
T Consensus 1 m~~ilivd~~~~~~~~l~~~L~~~~-----~~~~v~~~~~~~~~~~~~~~~~~dlvi~d~~--~~~~~g~~~~~~l~~~~ 73 (217)
T PRK09483 1 MINVLLVDDHELVRAGIRRILEDIK-----GIKVVGEACCGEDAVKWCRTNAVDVVLMDMN--MPGIGGLEATRKILRYT 73 (217)
T ss_pred CeEEEEECCcHHHHHHHHHHHccCC-----CCEEEEEeCCHHHHHHHHHhcCCCEEEEeCC--CCCCCHHHHHHHHHHHC
Confidence 4689999988777777777776631 5555322111111 12233346888887221 111122 2334444444
Q ss_pred CCCcee
Q 037843 90 PTMPLF 95 (203)
Q Consensus 90 ~~~Pil 95 (203)
...|++
T Consensus 74 ~~~~ii 79 (217)
T PRK09483 74 PDVKII 79 (217)
T ss_pred CCCeEE
Confidence 567877
No 257
>PRK00170 azoreductase; Reviewed
Probab=58.41 E-value=66 Score=24.55 Aligned_cols=38 Identities=18% Similarity=0.045 Sum_probs=22.8
Q ss_pred CCcEEEEeCCc----hHHHHHHHHHHHhhhhhcCCceEEEEe
Q 037843 12 KNPIVVIDNYD----SFTYNLCQYMGELELELSQGYHFEVYR 49 (203)
Q Consensus 12 ~~~i~iid~~~----~~~~~l~~~l~~~~~~~~~g~~~~v~~ 49 (203)
|++|++|.... |++..+.+++.+...+...|.+++++.
T Consensus 1 Mmkil~i~gSpr~~~s~s~~l~~~~~~~l~~~~~~~~v~~~d 42 (201)
T PRK00170 1 MSKVLVIKSSILGDYSQSMQLGDAFIEAYKEAHPDDEVTVRD 42 (201)
T ss_pred CCeEEEEecCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 46899996543 777777766654322322356776654
No 258
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=58.21 E-value=25 Score=29.39 Aligned_cols=74 Identities=23% Similarity=0.341 Sum_probs=43.3
Q ss_pred CCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCce-EEEEeCC--cccHHHHhccCCCEEEECCCCCCCCCcchHHHHHHH
Q 037843 11 DKNPIVVIDNYDSFTYNLCQYMGELELELSQGYH-FEVYRND--ELTVAELKRKKPRGVVISPGPGAPQESGISFRTVLE 87 (203)
Q Consensus 11 ~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~-~~v~~~~--~~~~~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~ 87 (203)
|..+|+|+|-..-....+.+..++. |+. ++.+-+| ..-++++.. +||-++- |.......++.
T Consensus 174 mpk~iaVvDIDERli~fi~k~aee~------g~~~ie~~~~Dlr~plpe~~~~-kFDvfiT--------DPpeTi~alk~ 238 (354)
T COG1568 174 MPKRIAVVDIDERLIKFIEKVAEEL------GYNNIEAFVFDLRNPLPEDLKR-KFDVFIT--------DPPETIKALKL 238 (354)
T ss_pred CCceEEEEechHHHHHHHHHHHHHh------CccchhheeehhcccChHHHHh-hCCeeec--------CchhhHHHHHH
Confidence 4567999997654445555566666 766 5544443 233566654 5787664 33344555665
Q ss_pred -hCCCCcee----ehhH
Q 037843 88 -LGPTMPLF----CMGL 99 (203)
Q Consensus 88 -~~~~~Pil----ClG~ 99 (203)
+.+++-.| |.|.
T Consensus 239 FlgRGI~tLkg~~~aGy 255 (354)
T COG1568 239 FLGRGIATLKGEGCAGY 255 (354)
T ss_pred HHhccHHHhcCCCccce
Confidence 36667777 6553
No 259
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=58.12 E-value=47 Score=26.60 Aligned_cols=91 Identities=16% Similarity=0.180 Sum_probs=51.6
Q ss_pred cCCCCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCC--EEEECCCCCCCCCcchHH---
Q 037843 8 SKNDKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPR--GVVISPGPGAPQESGISF--- 82 (203)
Q Consensus 8 ~~~~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~d--giil~GG~~~~~~~~~~~--- 82 (203)
|+.+...|+|=.-.++..--+++.|-++ |=.|.+--..+...++..+..++ ..+ .++.|.+...
T Consensus 1 mk~tgnTiLITGG~sGIGl~lak~f~el------gN~VIi~gR~e~~L~e~~~~~p~~~t~v-----~Dv~d~~~~~~lv 69 (245)
T COG3967 1 MKTTGNTILITGGASGIGLALAKRFLEL------GNTVIICGRNEERLAEAKAENPEIHTEV-----CDVADRDSRRELV 69 (245)
T ss_pred CcccCcEEEEeCCcchhhHHHHHHHHHh------CCEEEEecCcHHHHHHHHhcCcchheee-----ecccchhhHHHHH
Confidence 4455566777666666666788888888 88877653333445555543222 222 2444544333
Q ss_pred HHHHHhCCCCcee--ehhHHHHHHHhCCe
Q 037843 83 RTVLELGPTMPLF--CMGLKCIGEALEGR 109 (203)
Q Consensus 83 ~~i~~~~~~~Pil--ClG~Qlla~a~gg~ 109 (203)
+++.+...+.-+| |-|.|-=-...|.+
T Consensus 70 ewLkk~~P~lNvliNNAGIqr~~dlt~~e 98 (245)
T COG3967 70 EWLKKEYPNLNVLINNAGIQRNEDLTGAE 98 (245)
T ss_pred HHHHhhCCchheeeecccccchhhccCCc
Confidence 3333323344555 99999655544443
No 260
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=57.31 E-value=59 Score=22.90 Aligned_cols=55 Identities=15% Similarity=0.068 Sum_probs=31.2
Q ss_pred CceEEEEeC--Cccc---HHHHhccCCCEEEECCCC-CCCCCcchHHHHHHH--hCCCCcee-eh
Q 037843 42 GYHFEVYRN--DELT---VAELKRKKPRGVVISPGP-GAPQESGISFRTVLE--LGPTMPLF-CM 97 (203)
Q Consensus 42 g~~~~v~~~--~~~~---~~~l~~~~~dgiil~GG~-~~~~~~~~~~~~i~~--~~~~~Pil-Cl 97 (203)
|+.+..+.. .+-+ .+.+...++|.||.++.+ +.-.....- ..|++ ...++|++ ++
T Consensus 45 Gi~v~~vk~~~~~g~~~i~~~i~~g~i~~VInt~~~~~~~~~~~dg-~~iRr~a~~~~Ip~~Ttl 108 (115)
T cd01422 45 GLTVNRMKSGPLGGDQQIGALIAEGEIDAVIFFRDPLTAQPHEPDV-KALLRLCDVYNIPLATNR 108 (115)
T ss_pred CCcEEEEecCCCCchhHHHHHHHcCceeEEEEcCCCCCCCcccccH-HHHHHHHHHcCCCEEEcH
Confidence 888876642 2211 233444589999999876 432212222 23443 46789998 64
No 261
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=57.26 E-value=86 Score=24.71 Aligned_cols=50 Identities=14% Similarity=0.146 Sum_probs=23.7
Q ss_pred CCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccH-------HHHhccCCCEEEECC
Q 037843 20 NYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTV-------AELKRKKPRGVVISP 70 (203)
Q Consensus 20 ~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~-------~~l~~~~~dgiil~G 70 (203)
..+.|-..+.+.+++...+++.|+.+.+.... .+. +.+...++||||+.+
T Consensus 9 ~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~dgiIi~~ 65 (271)
T cd06321 9 LGNPFFVALAKGAEAAAKKLNPGVKVTVVSAD-YDLNKQVSQIDNFIAAKVDLILLNA 65 (271)
T ss_pred cCCHHHHHHHHHHHHHHHHhCCCeEEEEccCC-CCHHHHHHHHHHHHHhCCCEEEEeC
Confidence 33444444444444432222226666554332 122 122234799999965
No 262
>PRK11173 two-component response regulator; Provisional
Probab=56.99 E-value=34 Score=26.53 Aligned_cols=74 Identities=15% Similarity=0.167 Sum_probs=41.8
Q ss_pred CcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCCC
Q 037843 13 NPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELGPT 91 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~~~ 91 (203)
++|++++........+...++.. |..+............+....+|.||+--. .+...+ ...+.+++. ..
T Consensus 4 ~~iLiv~dd~~~~~~l~~~L~~~------g~~v~~~~~~~~~~~~~~~~~~dlvild~~--l~~~~g~~~~~~lr~~-~~ 74 (237)
T PRK11173 4 PHILIVEDELVTRNTLKSIFEAE------GYDVFEATDGAEMHQILSENDINLVIMDIN--LPGKNGLLLARELREQ-AN 74 (237)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHc------CCEEEEECCHHHHHHHHhhCCCCEEEEcCC--CCCCCHHHHHHHHhcC-CC
Confidence 57999998777777888888887 877654422111122233336898888322 122222 123334432 45
Q ss_pred Ccee
Q 037843 92 MPLF 95 (203)
Q Consensus 92 ~Pil 95 (203)
.|++
T Consensus 75 ~pii 78 (237)
T PRK11173 75 VALM 78 (237)
T ss_pred CCEE
Confidence 7877
No 263
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=56.82 E-value=53 Score=24.94 Aligned_cols=53 Identities=13% Similarity=0.177 Sum_probs=34.5
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPG 71 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG 71 (203)
..+|+||-.+......+.++|.+. |+.+.++........+... +.|.||.+=|
T Consensus 44 gk~vlViG~G~~~G~~~a~~L~~~------g~~V~v~~r~~~~l~~~l~-~aDiVIsat~ 96 (168)
T cd01080 44 GKKVVVVGRSNIVGKPLAALLLNR------NATVTVCHSKTKNLKEHTK-QADIVIVAVG 96 (168)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhC------CCEEEEEECCchhHHHHHh-hCCEEEEcCC
Confidence 578999998653455588899888 8887776543222322222 5788887444
No 264
>PRK05395 3-dehydroquinate dehydratase; Provisional
Probab=56.78 E-value=69 Score=23.88 Aligned_cols=29 Identities=28% Similarity=0.657 Sum_probs=18.0
Q ss_pred CceEEEEeCCcccHHHHh----c--cCCCEEEECCCC
Q 037843 42 GYHFEVYRNDELTVAELK----R--KKPRGVVISPGP 72 (203)
Q Consensus 42 g~~~~v~~~~~~~~~~l~----~--~~~dgiil~GG~ 72 (203)
|+.++....+ .+.++. . .++|||||=+|.
T Consensus 43 g~~v~~~QSN--~EGelId~I~~a~~~~dgiiINpga 77 (146)
T PRK05395 43 GVELEFFQSN--HEGELIDRIHEARDGADGIIINPGA 77 (146)
T ss_pred CCEEEEEeeC--cHHHHHHHHHhcccCCcEEEECchH
Confidence 8888876554 233332 1 268999996653
No 265
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=56.66 E-value=56 Score=27.33 Aligned_cols=28 Identities=14% Similarity=0.261 Sum_probs=19.6
Q ss_pred CCCEEEECCCCCCCCCcchHHHHHHHh-CCCCcee
Q 037843 62 KPRGVVISPGPGAPQESGISFRTVLEL-GPTMPLF 95 (203)
Q Consensus 62 ~~dgiil~GG~~~~~~~~~~~~~i~~~-~~~~Pil 95 (203)
.+|.+|..||.|. +...++.+ ..++|++
T Consensus 57 ~~d~vi~~GGDGT------~l~~~~~~~~~~~pv~ 85 (305)
T PRK02645 57 LIDLAIVLGGDGT------VLAAARHLAPHDIPIL 85 (305)
T ss_pred CcCEEEEECCcHH------HHHHHHHhccCCCCEE
Confidence 5799999999654 34455553 4679998
No 266
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=56.40 E-value=36 Score=25.83 Aligned_cols=50 Identities=12% Similarity=0.158 Sum_probs=31.7
Q ss_pred cEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEEC
Q 037843 14 PIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVIS 69 (203)
Q Consensus 14 ~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~ 69 (203)
+|+++|....+...+...++.. |..+............+....+|.+++-
T Consensus 2 ~iliv~~~~~~~~~l~~~L~~~------~~~v~~~~~~~~~l~~~~~~~~dlvi~d 51 (223)
T PRK11517 2 KILLIEDNQRTQEWVTQGLSEA------GYVIDAVSDGRDGLYLALKDDYALIILD 51 (223)
T ss_pred EEEEEeCCHHHHHHHHHHHHHC------CCEEEEECCHHHHHHHHhcCCCCEEEEE
Confidence 6899998877777788888777 7765443221111222333468988883
No 267
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=56.06 E-value=76 Score=23.62 Aligned_cols=75 Identities=13% Similarity=0.091 Sum_probs=40.3
Q ss_pred CcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCccc-HHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCC
Q 037843 13 NPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELT-VAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELGP 90 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~-~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~~ 90 (203)
++|+++|........+.++++.. |..+...-.+... .+.+....+|.||+--. .+...+ .....+++...
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~------~~~v~~~~~~~~~~~~~~~~~~~dlvi~d~~--~~~~~g~~~~~~l~~~~~ 72 (204)
T PRK09958 1 MNAIIIDDHPLAIAAIRNLLIKN------DIEILAELTEGGSAVQRVETLKPDIVIIDVD--IPGVNGIQVLETLRKRQY 72 (204)
T ss_pred CcEEEECCcHHHHHHHHHHHhcC------CCEEEEEeCCHHHHHHHHHccCCCEEEEeCC--CCCCCHHHHHHHHHhhCC
Confidence 36899998877777788888776 8776422111111 12233336788887322 121122 23344444334
Q ss_pred CCcee
Q 037843 91 TMPLF 95 (203)
Q Consensus 91 ~~Pil 95 (203)
..|++
T Consensus 73 ~~~ii 77 (204)
T PRK09958 73 SGIII 77 (204)
T ss_pred CCeEE
Confidence 56766
No 268
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=56.05 E-value=76 Score=25.58 Aligned_cols=72 Identities=10% Similarity=0.139 Sum_probs=42.5
Q ss_pred CCcEEEEeCCchH-HHHHHHHHHHhhhhhcCCceEEEEeCC---------cccHHHHh-------ccCCCEEEECCCCCC
Q 037843 12 KNPIVVIDNYDSF-TYNLCQYMGELELELSQGYHFEVYRND---------ELTVAELK-------RKKPRGVVISPGPGA 74 (203)
Q Consensus 12 ~~~i~iid~~~~~-~~~l~~~l~~~~~~~~~g~~~~v~~~~---------~~~~~~l~-------~~~~dgiil~GG~~~ 74 (203)
-+||.|+..|..- ...+.+++++. |+++.-.... ..+++.+. ..+.|+|++++....
T Consensus 120 ~~RIalvTPY~~~v~~~~~~~l~~~------G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~~~~aDAifisCTnLr 193 (239)
T TIGR02990 120 VRRISLLTPYTPETSRPMAQYFAVR------GFEIVNFTCLGLTDDREMARISPDCIVEAALAAFDPDADALFLSCTALR 193 (239)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHhC------CcEEeeeeccCCCCCceeeecCHHHHHHHHHHhcCCCCCEEEEeCCCch
Confidence 4789999887654 45677889888 8887654211 12333322 236899999754221
Q ss_pred CCCcchHHHHHHHhC--CCCcee
Q 037843 75 PQESGISFRTVLELG--PTMPLF 95 (203)
Q Consensus 75 ~~~~~~~~~~i~~~~--~~~Pil 95 (203)
..++|.+++ -++||+
T Consensus 194 ------t~~vi~~lE~~lGkPVl 210 (239)
T TIGR02990 194 ------AATCAQRIEQAIGKPVV 210 (239)
T ss_pred ------hHHHHHHHHHHHCCCEE
Confidence 123333321 259999
No 269
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=55.96 E-value=48 Score=26.36 Aligned_cols=28 Identities=18% Similarity=0.329 Sum_probs=17.0
Q ss_pred CceEEEEeCCcccH-------HHHhccCCCEEEECC
Q 037843 42 GYHFEVYRNDELTV-------AELKRKKPRGVVISP 70 (203)
Q Consensus 42 g~~~~v~~~~~~~~-------~~l~~~~~dgiil~G 70 (203)
|+.+.+.... .+. +.+...++||||+++
T Consensus 29 g~~v~~~~~~-~~~~~~~~~i~~~~~~~~Dgiii~~ 63 (282)
T cd06318 29 GYELISTDAQ-GDLTKQIADVEDLLTRGVNVLIINP 63 (282)
T ss_pred CCEEEEEcCC-CCHHHHHHHHHHHHHcCCCEEEEec
Confidence 8888776543 122 122234799999965
No 270
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=55.70 E-value=87 Score=27.97 Aligned_cols=85 Identities=13% Similarity=0.131 Sum_probs=46.5
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEE-EeCC--cccHHHHhccCCCEEEECCCCCCCCCcch--HHHHHH
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEV-YRND--ELTVAELKRKKPRGVVISPGPGAPQESGI--SFRTVL 86 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v-~~~~--~~~~~~l~~~~~dgiil~GG~~~~~~~~~--~~~~i~ 86 (203)
..+++++-.-.+.+- ++.++. +++-|+.+.- +-++ ..+.+++...++|.|+|+||...=+.+-. ..+.|-
T Consensus 72 GLkmvv~Glv~~~Ta---eAAk~A--AlgAGA~V~~~~a~~l~~~~l~~I~~~~PDIILLaGGtDGG~~e~~l~NA~~La 146 (463)
T TIGR01319 72 GLAMAAIGLVPEITA---EAAKRA--AHGAGAKIANVYAYDLNNKDIEAIEESNLDIILFAGGTDGGEEECGIHNAKMLA 146 (463)
T ss_pred ChheEEEeccchhhH---HHHHHH--HhcCCcEEEEEEeecCCHHHHHHHhhcCCCEEEEeCCcCCCchHHHHHHHHHHH
Confidence 467777765544432 233332 1222777654 3332 12356666679999999999643222111 234455
Q ss_pred HhCCCCceeehhHHH
Q 037843 87 ELGPTMPLFCMGLKC 101 (203)
Q Consensus 87 ~~~~~~PilClG~Ql 101 (203)
+..-+.||++-|-.-
T Consensus 147 ~~~~~~pIIyAGN~~ 161 (463)
T TIGR01319 147 EHGLDCAIIVAGNKD 161 (463)
T ss_pred hcCCCCcEEEeCCHH
Confidence 556679999445443
No 271
>PRK15115 response regulator GlrR; Provisional
Probab=55.07 E-value=94 Score=27.01 Aligned_cols=76 Identities=17% Similarity=0.253 Sum_probs=42.9
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELGP 90 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~~ 90 (203)
..+|+|||........+...++.. |..+............+....+|.||+--. .+...+ .....+++...
T Consensus 5 ~~~vLiVdd~~~~~~~l~~~L~~~------g~~v~~~~~~~eal~~l~~~~~dlvilD~~--lp~~~g~~ll~~l~~~~~ 76 (444)
T PRK15115 5 PAHLLLVDDDPGLLKLLGMRLTSE------GYSVVTAESGQEALRVLNREKVDLVISDLR--MDEMDGMQLFAEIQKVQP 76 (444)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHC------CCEEEEeCCHHHHHHHHhcCCCCEEEEcCC--CCCCCHHHHHHHHHhcCC
Confidence 478999999887778888888887 877654322111112233336788887322 111112 12333444345
Q ss_pred CCcee
Q 037843 91 TMPLF 95 (203)
Q Consensus 91 ~~Pil 95 (203)
..|++
T Consensus 77 ~~pvI 81 (444)
T PRK15115 77 GMPVI 81 (444)
T ss_pred CCcEE
Confidence 57777
No 272
>PF12724 Flavodoxin_5: Flavodoxin domain
Probab=54.90 E-value=29 Score=25.27 Aligned_cols=71 Identities=11% Similarity=0.009 Sum_probs=33.8
Q ss_pred eCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCC-cchHHHHHHHh---CCCCce
Q 037843 19 DNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQE-SGISFRTVLEL---GPTMPL 94 (203)
Q Consensus 19 d~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~-~~~~~~~i~~~---~~~~Pi 94 (203)
....+++.-+++++.+.. +..+..+.......+.....++|.||+ |+|-.... ...+.+++++. -.++|+
T Consensus 5 ~S~~G~Tk~~A~~ia~~l-----~~~~~~v~~~~~~~~~~~~~~yD~vi~-gspiy~g~~~~~~~~fi~~~~~~l~~k~v 78 (143)
T PF12724_consen 5 FSKTGNTKKIAEWIAEKL-----GEEGELVDLEKVEEDEPDLSDYDAVIF-GSPIYAGRIPGEMREFIKKNKDNLKNKKV 78 (143)
T ss_pred ECCCchHHHHHHHHHHHH-----hhhccEEEHHhhhhcccccccCCEEEE-EEEEECCcCCHHHHHHHHHHHHHHcCCcE
Confidence 444567777777776542 322222222111111112237899999 54432222 33344555542 355776
Q ss_pred e
Q 037843 95 F 95 (203)
Q Consensus 95 l 95 (203)
.
T Consensus 79 ~ 79 (143)
T PF12724_consen 79 A 79 (143)
T ss_pred E
Confidence 5
No 273
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=54.86 E-value=53 Score=21.52 Aligned_cols=55 Identities=15% Similarity=0.245 Sum_probs=31.4
Q ss_pred CCCCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCce-EEEEeCCcccHHHHhccCCCEEEEC
Q 037843 9 KNDKNPIVVIDNYDSFTYNLCQYMGELELELSQGYH-FEVYRNDELTVAELKRKKPRGVVIS 69 (203)
Q Consensus 9 ~~~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~-~~v~~~~~~~~~~l~~~~~dgiil~ 69 (203)
+....+|++++........+.+.++.. |.. +............+....+|.+++-
T Consensus 2 ~~~~~~il~~~~~~~~~~~l~~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~di~l~d 57 (129)
T PRK10610 2 ADKELKFLVVDDFSTMRRIVRNLLKEL------GFNNVEEAEDGVDALNKLQAGGFGFVISD 57 (129)
T ss_pred CcccceEEEEcCCHHHHHHHHHHHHHc------CCCeEEEeCCHHHHHHHhhccCCCEEEEc
Confidence 333468899988776777787888776 764 3322211111222333357888773
No 274
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=54.66 E-value=90 Score=24.40 Aligned_cols=38 Identities=18% Similarity=0.267 Sum_probs=21.9
Q ss_pred HHHHHHHhhhhhcCCceEEEEeCCccc---H----HHHhccCCCEEEECCC
Q 037843 28 LCQYMGELELELSQGYHFEVYRNDELT---V----AELKRKKPRGVVISPG 71 (203)
Q Consensus 28 l~~~l~~~~~~~~~g~~~~v~~~~~~~---~----~~l~~~~~dgiil~GG 71 (203)
+.+.+++. |+.+.+...+..+ . +.+...++||+|+.+.
T Consensus 21 i~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 65 (264)
T cd01574 21 IESAAREA------GYAVTLSMLAEADEEALRAAVRRLLAQRVDGVIVNAP 65 (264)
T ss_pred HHHHHHHC------CCeEEEEeCCCCchHHHHHHHHHHHhcCCCEEEEeCC
Confidence 44455555 8888776543221 1 1233347999999664
No 275
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=53.90 E-value=59 Score=26.03 Aligned_cols=30 Identities=10% Similarity=0.059 Sum_probs=19.0
Q ss_pred CceEEEEeCCc--ccHHHHhccCCCEEEECCC
Q 037843 42 GYHFEVYRNDE--LTVAELKRKKPRGVVISPG 71 (203)
Q Consensus 42 g~~~~v~~~~~--~~~~~l~~~~~dgiil~GG 71 (203)
|+.+.+...+. .....+...++||||+.+.
T Consensus 34 g~~~~~~~~~~~~~~~~~~~~~~~dgiii~~~ 65 (283)
T cd06279 34 GVNLLLLPASSEDSDSALVVSALVDGFIVYGV 65 (283)
T ss_pred CCEEEEecCccHHHHHHHHHhcCCCEEEEeCC
Confidence 89988775432 1122333458999999764
No 276
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=53.88 E-value=64 Score=24.30 Aligned_cols=68 Identities=10% Similarity=-0.026 Sum_probs=37.5
Q ss_pred EEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCc-chHHHHHHHhCCCCcee
Q 037843 17 VIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQES-GISFRTVLELGPTMPLF 95 (203)
Q Consensus 17 iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~-~~~~~~i~~~~~~~Pil 95 (203)
+.....++|.-+++++.+.. +. ..+++..+. .+.+. +||-|+|..+. ..... ..+.++|..+.+ +.|+
T Consensus 3 vYsS~TGNTkkvA~aI~~~l-----~~-~~~~~~~~~-~~~~~--~yD~i~lG~w~-d~G~~d~~~~~fl~~l~~-KkV~ 71 (160)
T PF12641_consen 3 VYSSRTGNTKKVAEAIAEAL-----GA-KDIVSVEEP-PEDLE--DYDLIFLGFWI-DKGTPDKDMKEFLKKLKG-KKVA 71 (160)
T ss_pred EEECCCChHHHHHHHHHHHC-----CC-ceeEecccc-ccCCC--CCCEEEEEcCc-cCCCCCHHHHHHHHHccC-CeEE
Confidence 34566788999999887752 44 233433322 12233 68999994443 22222 335667777642 4444
No 277
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=53.77 E-value=48 Score=22.90 Aligned_cols=65 Identities=22% Similarity=0.342 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhhhhhcCCceEEEEeCCcccHHH----HhccCCCEEEECCCCCC-CCCcchHHHHHHHhCCCCceee
Q 037843 25 TYNLCQYMGELELELSQGYHFEVYRNDELTVAE----LKRKKPRGVVISPGPGA-PQESGISFRTVLELGPTMPLFC 96 (203)
Q Consensus 25 ~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~----l~~~~~dgiil~GG~~~-~~~~~~~~~~i~~~~~~~PilC 96 (203)
...+..++++. |.++..+..+ .+.++ +...++|.|.+|..... ......+.+.+++...+.+++.
T Consensus 17 l~~la~~l~~~------G~~v~~~d~~-~~~~~l~~~~~~~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~ 86 (121)
T PF02310_consen 17 LLYLAAYLRKA------GHEVDILDAN-VPPEELVEALRAERPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVV 86 (121)
T ss_dssp HHHHHHHHHHT------TBEEEEEESS-B-HHHHHHHHHHTTCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEE
T ss_pred HHHHHHHHHHC------CCeEEEECCC-CCHHHHHHHHhcCCCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEE
Confidence 34577788888 9999988654 33333 33458999999653211 0011122344444455677773
No 278
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=53.77 E-value=57 Score=22.71 Aligned_cols=55 Identities=16% Similarity=0.019 Sum_probs=27.8
Q ss_pred CcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECC
Q 037843 13 NPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISP 70 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~G 70 (203)
.+|+++-..+--++.+++.++....+ .|+++++-.+. .+.......++|.|+++|
T Consensus 4 kkIllvC~~G~sTSll~~km~~~~~~--~gi~~~V~A~~-~~~~~~~~~~~DviLl~P 58 (106)
T PRK10499 4 KHIYLFCSAGMSTSLLVSKMRAQAEK--YEVPVIIEAFP-ETLAGEKGQNADVVLLGP 58 (106)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHH--CCCCEEEEEee-cchhhccccCCCEEEECH
Confidence 57888855544456666444333211 27777764421 122111122679888843
No 279
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=53.76 E-value=1.1e+02 Score=25.14 Aligned_cols=57 Identities=14% Similarity=0.250 Sum_probs=27.6
Q ss_pred CcEEEEe--CCchHHHHHHHHHHHhhhhhcCCceEEEEeCCc-cc-H----HHHhccCCCEEEECCC
Q 037843 13 NPIVVID--NYDSFTYNLCQYMGELELELSQGYHFEVYRNDE-LT-V----AELKRKKPRGVVISPG 71 (203)
Q Consensus 13 ~~i~iid--~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~-~~-~----~~l~~~~~dgiil~GG 71 (203)
..|.+|- ..+.|...+.+.+++... ..|+.+.+...++ .. . +.+...++||||+.+.
T Consensus 62 ~~Igvv~~~~~~~~~~~l~~gi~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 126 (328)
T PRK11303 62 RSIGLIIPDLENTSYARIAKYLERQAR--QRGYQLLIACSDDQPDNEMRCAEHLLQRQVDALIVSTS 126 (328)
T ss_pred ceEEEEeCCCCCchHHHHHHHHHHHHH--HcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 4566653 223343334443333211 1288887764331 11 1 1122347999999764
No 280
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=53.75 E-value=51 Score=25.29 Aligned_cols=75 Identities=12% Similarity=0.301 Sum_probs=42.1
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELGP 90 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~~ 90 (203)
..+|+++|....+...+.+.++.. |..+............+....+|.+++--.. +...+ .....++.. .
T Consensus 10 ~~~ilivdd~~~~~~~l~~~L~~~------~~~v~~~~~~~~~~~~~~~~~~dlvl~d~~~--~~~~g~~~~~~l~~~-~ 80 (240)
T PRK10710 10 TPRILIVEDEPKLGQLLIDYLQAA------SYATTLLSHGDEVLPYVRQTPPDLILLDLML--PGTDGLTLCREIRRF-S 80 (240)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHC------CCEEEEeCCHHHHHHHHhhCCCCEEEEeCCC--CCCCHHHHHHHHHhc-C
Confidence 458999998887788888888877 8776543221111122233368888883221 11111 223344432 4
Q ss_pred CCcee
Q 037843 91 TMPLF 95 (203)
Q Consensus 91 ~~Pil 95 (203)
..|++
T Consensus 81 ~~pii 85 (240)
T PRK10710 81 DIPIV 85 (240)
T ss_pred CCCEE
Confidence 57877
No 281
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=53.14 E-value=72 Score=31.04 Aligned_cols=79 Identities=20% Similarity=0.286 Sum_probs=48.2
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELGP 90 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~~ 90 (203)
..+|+|+|-.......+.+.|+.. |+.+.....-....+.+....+|.|++-- ..|...+ ...+.+++...
T Consensus 801 ~~~ILvVdD~~~~~~~l~~~L~~~------G~~v~~a~~g~eal~~l~~~~~DlVl~D~--~mP~mdG~el~~~ir~~~~ 872 (924)
T PRK10841 801 DMMILVVDDHPINRRLLADQLGSL------GYQCKTANDGVDALNVLSKNHIDIVLTDV--NMPNMDGYRLTQRLRQLGL 872 (924)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHc------CCEEEEECCHHHHHHHHHhCCCCEEEEcC--CCCCCCHHHHHHHHHhcCC
Confidence 468999998777777788889888 99876543211112233334688888721 1222222 23556666666
Q ss_pred CCcee-ehh
Q 037843 91 TMPLF-CMG 98 (203)
Q Consensus 91 ~~Pil-ClG 98 (203)
.+||+ +-+
T Consensus 873 ~~pII~lTa 881 (924)
T PRK10841 873 TLPVIGVTA 881 (924)
T ss_pred CCCEEEEEC
Confidence 78998 543
No 282
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=53.11 E-value=1.1e+02 Score=25.70 Aligned_cols=28 Identities=18% Similarity=0.313 Sum_probs=18.8
Q ss_pred CCCEEEECCCCCCCCCcchHHHHHHHh-CCCCcee
Q 037843 62 KPRGVVISPGPGAPQESGISFRTVLEL-GPTMPLF 95 (203)
Q Consensus 62 ~~dgiil~GG~~~~~~~~~~~~~i~~~-~~~~Pil 95 (203)
++|.+|..||.|. +....+.+ ..++|||
T Consensus 68 ~~Dlvi~iGGDGT------lL~aar~~~~~~iPil 96 (305)
T PRK02649 68 SMKFAIVLGGDGT------VLSAARQLAPCGIPLL 96 (305)
T ss_pred CcCEEEEEeCcHH------HHHHHHHhcCCCCcEE
Confidence 4799999999663 34444543 4567887
No 283
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=53.10 E-value=69 Score=21.67 Aligned_cols=52 Identities=15% Similarity=0.185 Sum_probs=26.1
Q ss_pred CcEEEEeCCchH-HHHH-HHHHHHhhhhhcCCceEEEEeCCcccHHHHhc--cCCCEEEECC
Q 037843 13 NPIVVIDNYDSF-TYNL-CQYMGELELELSQGYHFEVYRNDELTVAELKR--KKPRGVVISP 70 (203)
Q Consensus 13 ~~i~iid~~~~~-~~~l-~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~--~~~dgiil~G 70 (203)
.+|+++-. .+. +..+ ...+++..++ .|.++++...+ ..++.. .++|.|+.+.
T Consensus 3 ~kILvvCg-sG~~TS~m~~~ki~~~l~~--~gi~~~v~~~~---~~e~~~~~~~~D~iv~t~ 58 (94)
T PRK10310 3 RKIIVACG-GAVATSTMAAEEIKELCQS--HNIPVELIQCR---VNEIETYMDGVHLICTTA 58 (94)
T ss_pred CeEEEECC-CchhHHHHHHHHHHHHHHH--CCCeEEEEEec---HHHHhhhcCCCCEEEECC
Confidence 36666643 344 4433 3333333211 18888876533 334433 3689776644
No 284
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=52.70 E-value=63 Score=26.46 Aligned_cols=41 Identities=20% Similarity=0.197 Sum_probs=24.0
Q ss_pred HHHHHHHhhhhhcCCceEEEEeCCcc-cHHH----HhccCCCEEEECCCCCC
Q 037843 28 LCQYMGELELELSQGYHFEVYRNDEL-TVAE----LKRKKPRGVVISPGPGA 74 (203)
Q Consensus 28 l~~~l~~~~~~~~~g~~~~v~~~~~~-~~~~----l~~~~~dgiil~GG~~~ 74 (203)
+.+.+++. |..+.++..... ...+ .....+|.||+.||.|.
T Consensus 24 i~~~l~~~------~~~~~~~~t~~~~~~~~~~~~~~~~~~d~ivv~GGDGT 69 (293)
T TIGR00147 24 VIMLLREE------GMEIHVRVTWEKGDAARYVEEARKFGVDTVIAGGGDGT 69 (293)
T ss_pred HHHHHHHC------CCEEEEEEecCcccHHHHHHHHHhcCCCEEEEECCCCh
Confidence 44455555 888776543222 1111 11235799999999886
No 285
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=52.42 E-value=1.1e+02 Score=24.07 Aligned_cols=49 Identities=20% Similarity=0.207 Sum_probs=25.3
Q ss_pred CchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHH-------HHhccCCCEEEECCC
Q 037843 21 YDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVA-------ELKRKKPRGVVISPG 71 (203)
Q Consensus 21 ~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~-------~l~~~~~dgiil~GG 71 (203)
.+.|...+.+.+++...+ .|..+.+...+..+.+ .+...++||||+.+.
T Consensus 11 ~~~~~~~~~~g~~~~~~~--~g~~v~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 66 (271)
T cd06312 11 GDPFWTVVKNGAEDAAKD--LGVDVEYRGPETFDVADMARLIEAAIAAKPDGIVVTIP 66 (271)
T ss_pred CCcHHHHHHHHHHHHHHH--hCCEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 344544444434332111 1899887655421221 122347999999763
No 286
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=52.33 E-value=1.4e+02 Score=24.92 Aligned_cols=63 Identities=21% Similarity=0.198 Sum_probs=35.3
Q ss_pred CceEEEEeCCcc-cHHH----HhccCCCEEEECCCCCCCCCcchHHHHHHHh-CCCCc---ee-ehhHHHHHHHhCCee
Q 037843 42 GYHFEVYRNDEL-TVAE----LKRKKPRGVVISPGPGAPQESGISFRTVLEL-GPTMP---LF-CMGLKCIGEALEGRL 110 (203)
Q Consensus 42 g~~~~v~~~~~~-~~~~----l~~~~~dgiil~GG~~~~~~~~~~~~~i~~~-~~~~P---il-ClG~Qlla~a~gg~v 110 (203)
|.++.+...... +..+ +....+|.||..||.|.++ +.+..+ ..+.| |+ |-=+-.+|+++|...
T Consensus 33 g~~~~~~~t~~~g~a~~~a~~a~~~~~D~via~GGDGTv~------evingl~~~~~~~LgilP~GT~NdfAr~Lgip~ 105 (301)
T COG1597 33 GHELSVRVTEEAGDAIEIAREAAVEGYDTVIAAGGDGTVN------EVANGLAGTDDPPLGILPGGTANDFARALGIPL 105 (301)
T ss_pred CCeEEEEEeecCccHHHHHHHHHhcCCCEEEEecCcchHH------HHHHHHhcCCCCceEEecCCchHHHHHHcCCCc
Confidence 777766554322 2222 2223799999999987643 333332 23344 44 666666666666544
No 287
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=52.33 E-value=43 Score=25.56 Aligned_cols=50 Identities=18% Similarity=0.242 Sum_probs=31.7
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEE
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVI 68 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil 68 (203)
|.+|+|+|........+...++.. |..+............+. ..+|.+++
T Consensus 1 m~~ilivdd~~~~~~~l~~~l~~~------~~~v~~~~~~~~~~~~~~-~~~d~vl~ 50 (232)
T PRK10955 1 MNKILLVDDDRELTSLLKELLEME------GFNVIVAHDGEQALDLLD-DSIDLLLL 50 (232)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHC------CCEEEEeCCHHHHHHHhh-cCCCEEEE
Confidence 357999998877777888888777 877654321111112222 25888887
No 288
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=52.19 E-value=1.4e+02 Score=26.37 Aligned_cols=55 Identities=20% Similarity=0.087 Sum_probs=37.1
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcc-cHHHHhc--------------cCCCEEEECCCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDEL-TVAELKR--------------KKPRGVVISPGP 72 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~-~~~~l~~--------------~~~dgiil~GG~ 72 (203)
.++|+||-.+.+-...++++|.+. |+.|........ ..+++.. .++|.||+|+|-
T Consensus 7 ~~~v~viG~G~sG~s~~a~~L~~~------G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~spgi 76 (461)
T PRK00421 7 IKRIHFVGIGGIGMSGLAEVLLNL------GYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSSAI 76 (461)
T ss_pred CCEEEEEEEchhhHHHHHHHHHhC------CCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECCCC
Confidence 467999998876666689999998 999877643211 1122211 147889998875
No 289
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=52.04 E-value=60 Score=23.50 Aligned_cols=37 Identities=27% Similarity=0.237 Sum_probs=24.0
Q ss_pred CcEEEEeCC---chHHHHHHHHHHHhhhhhcCCceEEEEeCC
Q 037843 13 NPIVVIDNY---DSFTYNLCQYMGELELELSQGYHFEVYRND 51 (203)
Q Consensus 13 ~~i~iid~~---~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~ 51 (203)
++|++|..- .+++..+.+++.+...+. |+++++++..
T Consensus 1 Mkilii~gS~r~~~~t~~l~~~~~~~l~~~--g~e~~~i~l~ 40 (152)
T PF03358_consen 1 MKILIINGSPRKNSNTRKLAEAVAEQLEEA--GAEVEVIDLA 40 (152)
T ss_dssp -EEEEEESSSSTTSHHHHHHHHHHHHHHHT--TEEEEEEECT
T ss_pred CEEEEEECcCCCCCHHHHHHHHHHHHHHHc--CCEEEEEecc
Confidence 478888433 377888887776653222 8899888654
No 290
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=51.93 E-value=1.2e+02 Score=23.93 Aligned_cols=30 Identities=20% Similarity=0.358 Sum_probs=17.5
Q ss_pred CceEEEEeCC-cccHH-------HHhccCCCEEEECCC
Q 037843 42 GYHFEVYRND-ELTVA-------ELKRKKPRGVVISPG 71 (203)
Q Consensus 42 g~~~~v~~~~-~~~~~-------~l~~~~~dgiil~GG 71 (203)
|+.+.+...+ ..+.+ .+...++||||+.+.
T Consensus 29 g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgvii~~~ 66 (273)
T cd06310 29 GVKVTFQGPASETDVAGQVNLLENAIARGPDAILLAPT 66 (273)
T ss_pred CCEEEEecCccCCCHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 8998876431 11221 122347999999754
No 291
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=51.87 E-value=75 Score=21.70 Aligned_cols=84 Identities=18% Similarity=0.275 Sum_probs=46.0
Q ss_pred CCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCc-ccHHHHhcc-CCCEEEECCCCCCCCCcc-hHHHHHHH
Q 037843 11 DKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDE-LTVAELKRK-KPRGVVISPGPGAPQESG-ISFRTVLE 87 (203)
Q Consensus 11 ~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~-~~~~~l~~~-~~dgiil~GG~~~~~~~~-~~~~~i~~ 87 (203)
..++|+++|........+.+.++.. |..+....... ...+.+... .+|.+++--. .|.-.+ ...+.+++
T Consensus 4 ~~~~vLivdD~~~~~~~~~~~l~~~------g~~v~~a~~g~~~al~~~~~~~~~dlii~D~~--mp~~~G~~~~~~l~~ 75 (130)
T COG0784 4 SGLRVLVVDDEPVNRRLLKRLLEDL------GYEVVEAADGEEEALELLRELPQPDLILLDIN--MPGMDGIELLRRLRA 75 (130)
T ss_pred CCcEEEEEcCCHHHHHHHHHHHHHc------CCeEEEeCChHHHHHHHHHhCCCCCEEEEeCC--CCCCCHHHHHHHHHh
Confidence 3578999998776777788888888 86665543221 122223333 3788877222 111112 12344444
Q ss_pred hCCCCcee-ehhHHHH
Q 037843 88 LGPTMPLF-CMGLKCI 102 (203)
Q Consensus 88 ~~~~~Pil-ClG~Qll 102 (203)
.....|++ +-|....
T Consensus 76 ~~~~~pvv~~t~~~~~ 91 (130)
T COG0784 76 RGPNIPVILLTAYADE 91 (130)
T ss_pred CCCCCCEEEEEcCcCH
Confidence 33567865 5554433
No 292
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=51.70 E-value=65 Score=21.00 Aligned_cols=29 Identities=24% Similarity=0.392 Sum_probs=16.3
Q ss_pred CceEEEEeCCcccHHHHhccCCCEEEECCC
Q 037843 42 GYHFEVYRNDELTVAELKRKKPRGVVISPG 71 (203)
Q Consensus 42 g~~~~v~~~~~~~~~~l~~~~~dgiil~GG 71 (203)
|+++.+........++... ++|.|++++-
T Consensus 28 gi~~~~~~~~~~~~~~~~~-~~D~il~~~~ 56 (90)
T PF02302_consen 28 GIEVEVSAGSILEVEEIAD-DADLILLTPQ 56 (90)
T ss_dssp TECEEEEEEETTTHHHHHT-T-SEEEEEES
T ss_pred cCceEEEEecccccccccC-CCcEEEEcCc
Confidence 8777765432123334333 5899999664
No 293
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=51.62 E-value=1.1e+02 Score=26.81 Aligned_cols=55 Identities=15% Similarity=0.084 Sum_probs=35.3
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhc-------------cCCCEEEECCCCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKR-------------KKPRGVVISPGPG 73 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~-------------~~~dgiil~GG~~ 73 (203)
.++|+||..+.+-.. .+++|.+. |+.+...........++.. .++|.||.|+|-.
T Consensus 9 ~~~i~viG~G~~G~~-~a~~l~~~------G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~sp~i~ 76 (460)
T PRK01390 9 GKTVAVFGLGGSGLA-TARALVAG------GAEVIAWDDNPASRAKAAAAGITTADLRTADWSGFAALVLSPGVP 76 (460)
T ss_pred CCEEEEEeecHhHHH-HHHHHHHC------CCEEEEECCChhhHHHHHhcCccccCCChhHHcCCCEEEECCCCC
Confidence 358999998876554 58899888 9988775432111111110 1578899998864
No 294
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=51.60 E-value=97 Score=27.35 Aligned_cols=85 Identities=11% Similarity=0.162 Sum_probs=49.0
Q ss_pred CCcEEEEeCCchH-HHHHHHHHHHhhhhhcCCceEEEEeCC---cccHHHH----h---c-cCCCEEEECCCCCCCCCcc
Q 037843 12 KNPIVVIDNYDSF-TYNLCQYMGELELELSQGYHFEVYRND---ELTVAEL----K---R-KKPRGVVISPGPGAPQESG 79 (203)
Q Consensus 12 ~~~i~iid~~~~~-~~~l~~~l~~~~~~~~~g~~~~v~~~~---~~~~~~l----~---~-~~~dgiil~GG~~~~~~~~ 79 (203)
..+|+||...++- ...+.+.++.. ...+++.++|.. +....++ . . .++|.|||.=|.|+..|--
T Consensus 129 p~~i~vits~~~aa~~D~~~~~~~r----~p~~~~~~~~~~vQG~~a~~~i~~al~~~~~~~~~dviii~RGGGs~eDL~ 204 (432)
T TIGR00237 129 PKRVGVITSQTGAALADILHILKRR----DPSLKVVIYPTLVQGEGAVQSIVESIELANTKNECDVLIVGRGGGSLEDLW 204 (432)
T ss_pred CCEEEEEeCCccHHHHHHHHHHHhh----CCCceEEEecccccCccHHHHHHHHHHHhhcCCCCCEEEEecCCCCHHHhh
Confidence 4679999766543 23355555444 124677666542 1112222 1 1 1489999988888865432
Q ss_pred hH--HHHHHH-hCCCCcee-ehhHH
Q 037843 80 IS--FRTVLE-LGPTMPLF-CMGLK 100 (203)
Q Consensus 80 ~~--~~~i~~-~~~~~Pil-ClG~Q 100 (203)
.+ ..+.++ +.-.+||+ .-||.
T Consensus 205 ~Fn~e~~~rai~~~~~Pvis~iGHe 229 (432)
T TIGR00237 205 SFNDEKVARAIFLSKIPIISAVGHE 229 (432)
T ss_pred hcCcHHHHHHHHcCCCCEEEecCcC
Confidence 21 234444 34569999 99998
No 295
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=51.43 E-value=98 Score=23.37 Aligned_cols=95 Identities=12% Similarity=0.086 Sum_probs=45.6
Q ss_pred CCCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEe--CCc-cc----HHHHhccCCCEEEECCCCCCCCCcchHH
Q 037843 10 NDKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYR--NDE-LT----VAELKRKKPRGVVISPGPGAPQESGISF 82 (203)
Q Consensus 10 ~~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~--~~~-~~----~~~l~~~~~dgiil~GG~~~~~~~~~~~ 82 (203)
+...+|.+|-........+.+.+++. ..|+.+.-.. +.. .. .+.+...++|.|+++ -|.|..+....
T Consensus 44 ~~~~~v~llG~~~~~~~~~~~~l~~~----yp~l~i~g~~~g~~~~~~~~~i~~~I~~~~pdiv~vg--lG~PkQE~~~~ 117 (171)
T cd06533 44 QKGLRVFLLGAKPEVLEKAAERLRAR----YPGLKIVGYHHGYFGPEEEEEIIERINASGADILFVG--LGAPKQELWIA 117 (171)
T ss_pred HcCCeEEEECCCHHHHHHHHHHHHHH----CCCcEEEEecCCCCChhhHHHHHHHHHHcCCCEEEEE--CCCCHHHHHHH
Confidence 33567877755444444455555554 2366654321 111 11 233444578888883 34555443333
Q ss_pred HHHHHhCCCCcee-ehhHHHHHHHhCCeecccc
Q 037843 83 RTVLELGPTMPLF-CMGLKCIGEALEGRLYVLL 114 (203)
Q Consensus 83 ~~i~~~~~~~Pil-ClG~Qlla~a~gg~v~~~~ 114 (203)
+....+ +.+++ |.|.- -..+.|++.+.+
T Consensus 118 ~~~~~l--~~~v~~~vG~~--~d~~aG~~~raP 146 (171)
T cd06533 118 RHKDRL--PVPVAIGVGGS--FDFLAGTVKRAP 146 (171)
T ss_pred HHHHHC--CCCEEEEecee--eEeccCCcccCc
Confidence 333333 36766 55543 122345555554
No 296
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=51.27 E-value=1.2e+02 Score=25.00 Aligned_cols=30 Identities=20% Similarity=0.182 Sum_probs=17.8
Q ss_pred CceEEEEeCCcccHH-------HHhccCCCEEEECCCC
Q 037843 42 GYHFEVYRNDELTVA-------ELKRKKPRGVVISPGP 72 (203)
Q Consensus 42 g~~~~v~~~~~~~~~-------~l~~~~~dgiil~GG~ 72 (203)
|..+.+.... .+.+ .+...++||||+.+..
T Consensus 94 g~~~~~~~~~-~~~~~~~~~~~~l~~~~vdgiIi~~~~ 130 (342)
T PRK10014 94 GRMVFLLQGG-KDGEQLAQRFSTLLNQGVDGVVIAGAA 130 (342)
T ss_pred CCEEEEEeCC-CCHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 8887665443 1211 2333479999997753
No 297
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=51.18 E-value=1e+02 Score=23.05 Aligned_cols=73 Identities=18% Similarity=0.227 Sum_probs=39.5
Q ss_pred EEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCCCCc
Q 037843 15 IVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELGPTMP 93 (203)
Q Consensus 15 i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~~~~P 93 (203)
|+++|........+...++.. |..+............+....+|.+++--. .+...+ .....++......|
T Consensus 1 iliidd~~~~~~~l~~~l~~~------~~~v~~~~~~~~~~~~~~~~~~dlvl~d~~--~~~~~g~~~~~~l~~~~~~~~ 72 (218)
T TIGR01387 1 ILVVEDEQKTAEYLQQGLSES------GYVVDAASNGRDGLHLALKDDYDLIILDVM--LPGMDGWQILQTLRRSGKQTP 72 (218)
T ss_pred CEEEECCHHHHHHHHHHHHHC------CCEEEEECCHHHHHHHHhcCCCCEEEEeCC--CCCCCHHHHHHHHHccCCCCc
Confidence 478888777777788888776 776543322111122233346898888322 111111 22334444345688
Q ss_pred ee
Q 037843 94 LF 95 (203)
Q Consensus 94 il 95 (203)
++
T Consensus 73 ii 74 (218)
T TIGR01387 73 VL 74 (218)
T ss_pred EE
Confidence 87
No 298
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=51.11 E-value=1.3e+02 Score=24.49 Aligned_cols=52 Identities=12% Similarity=0.093 Sum_probs=25.3
Q ss_pred CCchHHHHHHHHHHHhhhhhcCCceEEEEeCCccc------HHHHhccCCCEEEECCC
Q 037843 20 NYDSFTYNLCQYMGELELELSQGYHFEVYRNDELT------VAELKRKKPRGVVISPG 71 (203)
Q Consensus 20 ~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~------~~~l~~~~~dgiil~GG 71 (203)
..+.|-..+.+.+++.......|+.+.+.+..... .+.+...++||||+.+.
T Consensus 9 ~~~~~~~~~~~gi~~~a~~~~~g~~~~~~~~~~~~~~q~~~i~~l~~~~vdgiii~~~ 66 (303)
T cd01539 9 FDDTFISLVRKNLEDIQKENGGKVEFTFYDAKNNQSTQNEQIDTALAKGVDLLAVNLV 66 (303)
T ss_pred CCChHHHHHHHHHHHHHHhhCCCeeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 33445444444444332111127777766543111 12233348999999653
No 299
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=50.51 E-value=1.2e+02 Score=23.80 Aligned_cols=38 Identities=16% Similarity=0.395 Sum_probs=22.0
Q ss_pred HHHHHHHhhhhhcCCceEEEEeCCccc------HHHHhccCCCEEEECCC
Q 037843 28 LCQYMGELELELSQGYHFEVYRNDELT------VAELKRKKPRGVVISPG 71 (203)
Q Consensus 28 l~~~l~~~~~~~~~g~~~~v~~~~~~~------~~~l~~~~~dgiil~GG 71 (203)
+.+.+++. |+.+.+...+... .+.+...++||||+.++
T Consensus 21 i~~~a~~~------g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~ 64 (269)
T cd06281 21 AEDRLRAA------GYSLLIANSLNDPERELEILRSFEQRRMDGIIIAPG 64 (269)
T ss_pred HHHHHHHc------CCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEecC
Confidence 44455555 8988776543111 11233347999999775
No 300
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=50.45 E-value=87 Score=29.91 Aligned_cols=77 Identities=12% Similarity=0.161 Sum_probs=45.9
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhcc--CCCEEEECCCCCCCCCcc-hHHHHHHHh
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRK--KPRGVVISPGPGAPQESG-ISFRTVLEL 88 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~--~~dgiil~GG~~~~~~~~-~~~~~i~~~ 88 (203)
+.+|+|+|........+.+.++.. |+.+..........+.+... .+|.||+ ..+...+ .....++..
T Consensus 697 ~~~ILvVddd~~~~~~l~~~L~~~------G~~v~~~~s~~~al~~l~~~~~~~DlVll----~~~~~~g~~l~~~l~~~ 766 (828)
T PRK13837 697 GETVLLVEPDDATLERYEEKLAAL------GYEPVGFSTLAAAIAWISKGPERFDLVLV----DDRLLDEEQAAAALHAA 766 (828)
T ss_pred CCEEEEEcCCHHHHHHHHHHHHHC------CCEEEEeCCHHHHHHHHHhCCCCceEEEE----CCCCCCHHHHHHHHHhh
Confidence 457999998877777888888888 98876653221112223221 2688887 1222222 234555555
Q ss_pred CCCCcee-ehh
Q 037843 89 GPTMPLF-CMG 98 (203)
Q Consensus 89 ~~~~Pil-ClG 98 (203)
...+||+ +-+
T Consensus 767 ~~~ipIIvls~ 777 (828)
T PRK13837 767 APTLPIILGGN 777 (828)
T ss_pred CCCCCEEEEeC
Confidence 5678988 543
No 301
>PRK09004 FMN-binding protein MioC; Provisional
Probab=50.29 E-value=84 Score=23.06 Aligned_cols=51 Identities=14% Similarity=0.073 Sum_probs=28.7
Q ss_pred CCcEEEE-eCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEE
Q 037843 12 KNPIVVI-DNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVI 68 (203)
Q Consensus 12 ~~~i~ii-d~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil 68 (203)
|.+|+|+ -...+.+..+++.+.+... ..|..+.++.. .+++++. +.|.+||
T Consensus 1 M~~i~I~ygS~tGnae~~A~~l~~~~~--~~g~~~~~~~~--~~~~~l~--~~~~li~ 52 (146)
T PRK09004 1 MADITLISGSTLGGAEYVADHLAEKLE--EAGFSTETLHG--PLLDDLS--ASGLWLI 52 (146)
T ss_pred CCeEEEEEEcCchHHHHHHHHHHHHHH--HcCCceEEecc--CCHHHhc--cCCeEEE
Confidence 3467776 3334556666666644422 12888877643 3466665 3466554
No 302
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=49.97 E-value=1e+02 Score=24.15 Aligned_cols=38 Identities=16% Similarity=0.295 Sum_probs=21.4
Q ss_pred HHHHHHHhhhhhcCCceEEEEeCCcccH------HHHhccCCCEEEECCC
Q 037843 28 LCQYMGELELELSQGYHFEVYRNDELTV------AELKRKKPRGVVISPG 71 (203)
Q Consensus 28 l~~~l~~~~~~~~~g~~~~v~~~~~~~~------~~l~~~~~dgiil~GG 71 (203)
+.+++++. |+.+.+...+.... +.+...++||||+.+.
T Consensus 21 i~~~~~~~------g~~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~ 64 (270)
T cd06296 21 VEEAAAAA------GYDVVLSESGRRTSPERQWVERLSARRTDGVILVTP 64 (270)
T ss_pred HHHHHHHc------CCeEEEecCCCchHHHHHHHHHHHHcCCCEEEEecC
Confidence 44455555 88887765432111 1122337999999653
No 303
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=49.94 E-value=1.1e+02 Score=22.93 Aligned_cols=50 Identities=8% Similarity=0.080 Sum_probs=29.9
Q ss_pred EEEE-eCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECC
Q 037843 15 IVVI-DNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISP 70 (203)
Q Consensus 15 i~ii-d~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~G 70 (203)
|+|+ ....+++..+++.+.+... +..++++.....+..++. ++|.|||.-
T Consensus 2 i~IiY~S~tGnTe~vA~~Ia~~l~----~~~~~i~~~~~~~~~~l~--~~d~ii~gs 52 (167)
T TIGR01752 2 IGIFYGTDTGNTEGIAEKIQKELG----EDDVDVFNIAKASKEDLN--AYDKLILGT 52 (167)
T ss_pred EEEEEECCCChHHHHHHHHHHHhC----CCceEEEEcccCCHhHHh--hCCEEEEEe
Confidence 4444 4456778888888766421 233555554444455665 579999843
No 304
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after Escherichia coli deoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerization domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].
Probab=49.35 E-value=71 Score=23.88 Aligned_cols=80 Identities=18% Similarity=0.288 Sum_probs=46.9
Q ss_pred CcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCC---cc-hHHHHHHHh
Q 037843 13 NPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQE---SG-ISFRTVLEL 88 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~---~~-~~~~~i~~~ 88 (203)
-.+++||.+. ....+.++|... . ++.++.++-.-...+....---|+++||.-.+.. .+ ...+.++++
T Consensus 20 ~~~Ifld~Gt-T~~~la~~L~~~------~-~ltVvTnsl~ia~~l~~~~~~~vi~~GG~~~~~~~~~~G~~a~~~l~~~ 91 (161)
T PF00455_consen 20 GDTIFLDSGT-TTLELAKYLPDK------K-NLTVVTNSLPIANELSENPNIEVILLGGEVNPKSLSFVGPIALEALRQF 91 (161)
T ss_pred CCEEEEECch-HHHHHHHHhhcC------C-ceEEEECCHHHHHHHHhcCceEEEEeCCEEEcCCCcEECchHHHHHHhh
Confidence 3578899875 456677777665 2 6667765422233444322235667788655443 23 245677777
Q ss_pred CCCCcee-ehhHH
Q 037843 89 GPTMPLF-CMGLK 100 (203)
Q Consensus 89 ~~~~Pil-ClG~Q 100 (203)
.-++-++ |-|.-
T Consensus 92 ~~d~afi~~~gi~ 104 (161)
T PF00455_consen 92 RFDKAFIGADGIS 104 (161)
T ss_pred ccceEEecccEec
Confidence 6667778 76654
No 305
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=49.21 E-value=1.5e+02 Score=24.72 Aligned_cols=28 Identities=21% Similarity=0.376 Sum_probs=18.5
Q ss_pred CCCEEEECCCCCCCCCcchHHHHHHHh-CCCCcee
Q 037843 62 KPRGVVISPGPGAPQESGISFRTVLEL-GPTMPLF 95 (203)
Q Consensus 62 ~~dgiil~GG~~~~~~~~~~~~~i~~~-~~~~Pil 95 (203)
.+|.+|..||.|. +....+.+ ..++|||
T Consensus 64 ~~dlvi~lGGDGT------~L~aa~~~~~~~~Pil 92 (292)
T PRK01911 64 SADMVISIGGDGT------FLRTATYVGNSNIPIL 92 (292)
T ss_pred CCCEEEEECCcHH------HHHHHHHhcCCCCCEE
Confidence 4799999999663 34444443 3567877
No 306
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=49.08 E-value=1.3e+02 Score=23.64 Aligned_cols=29 Identities=10% Similarity=0.219 Sum_probs=17.2
Q ss_pred CceEEEEeCCcccH-------HHHhccCCCEEEECCC
Q 037843 42 GYHFEVYRNDELTV-------AELKRKKPRGVVISPG 71 (203)
Q Consensus 42 g~~~~v~~~~~~~~-------~~l~~~~~dgiil~GG 71 (203)
|+.+.+...+ .+. ..+...++||+|+.+.
T Consensus 30 ~~~~~~~~~~-~~~~~~~~~i~~l~~~~vdgiii~~~ 65 (272)
T cd06301 30 GVELQFEDAK-NDVATQLSQVENFIAQGVDAIIVVPV 65 (272)
T ss_pred CcEEEEeCCC-CCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 8888776432 121 1222347999999664
No 307
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=48.81 E-value=1.1e+02 Score=22.99 Aligned_cols=53 Identities=17% Similarity=0.232 Sum_probs=35.2
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPG 71 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG 71 (203)
.++|+||....-.-.-+...|... |+.+++.+....+..+... +.|.||..-|
T Consensus 36 Gk~v~VvGrs~~VG~Pla~lL~~~------~atVt~~h~~T~~l~~~~~-~ADIVVsa~G 88 (160)
T PF02882_consen 36 GKKVVVVGRSNIVGKPLAMLLLNK------GATVTICHSKTKNLQEITR-RADIVVSAVG 88 (160)
T ss_dssp T-EEEEE-TTTTTHHHHHHHHHHT------T-EEEEE-TTSSSHHHHHT-TSSEEEE-SS
T ss_pred CCEEEEECCcCCCChHHHHHHHhC------CCeEEeccCCCCcccceee-eccEEeeeec
Confidence 578999987665667788888888 9999998876555655543 5688887555
No 308
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=48.61 E-value=95 Score=24.52 Aligned_cols=30 Identities=23% Similarity=0.371 Sum_probs=17.3
Q ss_pred CceEEEEe-CC-ccc-----HHHHhccCCCEEEECCC
Q 037843 42 GYHFEVYR-ND-ELT-----VAELKRKKPRGVVISPG 71 (203)
Q Consensus 42 g~~~~v~~-~~-~~~-----~~~l~~~~~dgiil~GG 71 (203)
|+.+.+.. .+ ... ...+...++||+|+.+.
T Consensus 28 g~~~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~ 64 (271)
T cd06314 28 GVDVEFVVPQQGTVNAQLRMLEDLIAEGVDGIAISPI 64 (271)
T ss_pred CCeEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEecC
Confidence 88887763 22 111 11233347999999763
No 309
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=48.35 E-value=1.2e+02 Score=26.57 Aligned_cols=75 Identities=17% Similarity=0.322 Sum_probs=42.3
Q ss_pred CcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCCC
Q 037843 13 NPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELGPT 91 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~~~ 91 (203)
.+|+|||....+...+.+.++.. |..+............+....+|.||+--. .+...+ .+.+.+++....
T Consensus 4 ~~ILiVdd~~~~~~~L~~~L~~~------g~~v~~~~s~~~al~~l~~~~~DlvllD~~--lp~~dgl~~l~~ir~~~~~ 75 (469)
T PRK10923 4 GIVWVVDDDSSIRWVLERALAGA------GLTCTTFENGNEVLEALASKTPDVLLSDIR--MPGMDGLALLKQIKQRHPM 75 (469)
T ss_pred CeEEEEECCHHHHHHHHHHHHHc------CCEEEEECCHHHHHHHHhcCCCCEEEECCC--CCCCCHHHHHHHHHhhCCC
Confidence 57999998887778888888887 887654322111122233346788776321 122122 123444443445
Q ss_pred Ccee
Q 037843 92 MPLF 95 (203)
Q Consensus 92 ~Pil 95 (203)
.|++
T Consensus 76 ~pvI 79 (469)
T PRK10923 76 LPVI 79 (469)
T ss_pred CeEE
Confidence 7777
No 310
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=48.10 E-value=1.1e+02 Score=23.87 Aligned_cols=30 Identities=17% Similarity=0.377 Sum_probs=18.1
Q ss_pred CceEEEEeCCccc------HHHHhccCCCEEEECCC
Q 037843 42 GYHFEVYRNDELT------VAELKRKKPRGVVISPG 71 (203)
Q Consensus 42 g~~~~v~~~~~~~------~~~l~~~~~dgiil~GG 71 (203)
|+.+.+...+... .+.+...++||||+.+.
T Consensus 29 g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 64 (268)
T cd01575 29 GYQLLLGNTGYSPEREEELLRTLLSRRPAGLILTGL 64 (268)
T ss_pred CCEEEEecCCCCchhHHHHHHHHHHcCCCEEEEeCC
Confidence 8888776543111 12233347999999764
No 311
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=47.89 E-value=96 Score=21.86 Aligned_cols=41 Identities=10% Similarity=0.061 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHh----ccCCCEEEECCCC
Q 037843 25 TYNLCQYMGELELELSQGYHFEVYRNDELTVAELK----RKKPRGVVISPGP 72 (203)
Q Consensus 25 ~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~----~~~~dgiil~GG~ 72 (203)
...+..+|+.. |+++...-.+ .+.+++. ..++|.|++|...
T Consensus 16 ~~~~~~~l~~~------G~~vi~lG~~-vp~e~~~~~a~~~~~d~V~iS~~~ 60 (122)
T cd02071 16 AKVIARALRDA------GFEVIYTGLR-QTPEEIVEAAIQEDVDVIGLSSLS 60 (122)
T ss_pred HHHHHHHHHHC------CCEEEECCCC-CCHHHHHHHHHHcCCCEEEEcccc
Confidence 34566677887 9998876554 4444442 3489999998764
No 312
>PRK13055 putative lipid kinase; Reviewed
Probab=47.86 E-value=65 Score=27.16 Aligned_cols=57 Identities=9% Similarity=0.187 Sum_probs=30.2
Q ss_pred CCcEEEE-eCCchH---H---HHHHHHHHHhhhhhcCCceEEEEeCC--cccHHH----HhccCCCEEEECCCCCC
Q 037843 12 KNPIVVI-DNYDSF---T---YNLCQYMGELELELSQGYHFEVYRND--ELTVAE----LKRKKPRGVVISPGPGA 74 (203)
Q Consensus 12 ~~~i~ii-d~~~~~---~---~~l~~~l~~~~~~~~~g~~~~v~~~~--~~~~~~----l~~~~~dgiil~GG~~~ 74 (203)
|+|++|| +..++. . ..+.+.|++. |..+.++... .....+ ....++|.||+.||.|.
T Consensus 2 ~~r~~iI~NP~sG~~~~~~~~~~i~~~l~~~------g~~~~i~~t~~~~~~a~~~~~~~~~~~~d~vvv~GGDGT 71 (334)
T PRK13055 2 QKRARLIYNPTSGQEIMKKNVADILDILEQA------GYETSAFQTTPEPNSAKNEAKRAAEAGFDLIIAAGGDGT 71 (334)
T ss_pred CceEEEEECCCCCchhHHHHHHHHHHHHHHc------CCeEEEEEeecCCccHHHHHHHHhhcCCCEEEEECCCCH
Confidence 4677666 333322 1 1234455555 7777654321 112222 22236899999999985
No 313
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=47.81 E-value=1.1e+02 Score=22.47 Aligned_cols=53 Identities=9% Similarity=0.033 Sum_probs=38.4
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPG 71 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG 71 (203)
.++|+|+.........+...|.+. |+.+.+.+....+.++... +.|.||..=|
T Consensus 28 gk~v~VvGrs~~vG~pla~lL~~~------gatV~~~~~~t~~l~~~v~-~ADIVvsAtg 80 (140)
T cd05212 28 GKKVLVVGRSGIVGAPLQCLLQRD------GATVYSCDWKTIQLQSKVH-DADVVVVGSP 80 (140)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC------CCEEEEeCCCCcCHHHHHh-hCCEEEEecC
Confidence 578999988777777888888887 9999988755444544332 5688876444
No 314
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=47.72 E-value=1e+02 Score=26.49 Aligned_cols=51 Identities=12% Similarity=0.171 Sum_probs=31.8
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCC-ceEEEEeCCc-ccHHHHhccCCCEEEE
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQG-YHFEVYRNDE-LTVAELKRKKPRGVVI 68 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g-~~~~v~~~~~-~~~~~l~~~~~dgiil 68 (203)
+.||+|||.-......+.+.|... | +.+.....+. ...+.+....+|.|.+
T Consensus 1 ~irVlvVddsal~R~~i~~~l~~~------~~i~vv~~a~ng~~a~~~~~~~~PDVi~l 53 (350)
T COG2201 1 KIRVLVVDDSALMRKVISDILNSD------PDIEVVGTARNGREAIDKVKKLKPDVITL 53 (350)
T ss_pred CcEEEEEcCcHHHHHHHHHHHhcC------CCeEEEEecCCHHHHHHHHHhcCCCEEEE
Confidence 478999998655556666777665 4 5554443331 1234444568898888
No 315
>COG0521 MoaB Molybdopterin biosynthesis enzymes [Coenzyme metabolism]
Probab=47.64 E-value=1.3e+02 Score=23.10 Aligned_cols=44 Identities=20% Similarity=0.230 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhhhhhcCCceE---EEEeCCccc-HHHHh---ccCCCEEEECCCCCC
Q 037843 25 TYNLCQYMGELELELSQGYHF---EVYRNDELT-VAELK---RKKPRGVVISPGPGA 74 (203)
Q Consensus 25 ~~~l~~~l~~~~~~~~~g~~~---~v~~~~~~~-~~~l~---~~~~dgiil~GG~~~ 74 (203)
...+.++|++. |.++ .+++.+... ..++. ...+|.||.+||.|-
T Consensus 29 G~~l~~~L~~a------g~~~~~~~iV~D~~~~I~~~l~~~~~~~~DvvlttGGTG~ 79 (169)
T COG0521 29 GPLLVELLEEA------GHNVAAYTIVPDDKEQIRATLIALIDEDVDVVLTTGGTGI 79 (169)
T ss_pred hhHHHHHHHHc------CCccceEEEeCCCHHHHHHHHHHHhcCCCCEEEEcCCccC
Confidence 45677888887 6655 344432111 11222 113899999999884
No 316
>PRK03604 moaC bifunctional molybdenum cofactor biosynthesis protein MoaC/MogA; Provisional
Probab=47.59 E-value=54 Score=27.69 Aligned_cols=60 Identities=17% Similarity=0.225 Sum_probs=35.4
Q ss_pred chHHHHHHHHHHHhhhhhcCCceEEEEe--CCccc--HHHHhc---cCCCEEEECCCCCCCCCcchHHHHHHHh
Q 037843 22 DSFTYNLCQYMGELELELSQGYHFEVYR--NDELT--VAELKR---KKPRGVVISPGPGAPQESGISFRTVLEL 88 (203)
Q Consensus 22 ~~~~~~l~~~l~~~~~~~~~g~~~~v~~--~~~~~--~~~l~~---~~~dgiil~GG~~~~~~~~~~~~~i~~~ 88 (203)
+++...+..++++. |+.+..+. .|+.. .+.+.. ..+|.||.+||.| +...+...+.+..+
T Consensus 174 Dsn~~~L~~~L~~~------G~~v~~~~iVpDD~~~I~~al~~a~~~~~DlIITTGGtg-~g~~D~tpeAl~~l 240 (312)
T PRK03604 174 DRSGKLIVEGLEEA------GFEVSHYTIIPDEPAEIAAAVAAWIAEGYALIITTGGTG-LGPRDVTPEALAPL 240 (312)
T ss_pred EhHHHHHHHHHHHC------CCEEEEEEEcCCCHHHHHHHHHHhhhCCCCEEEECCCCC-CCCCccHHHHHHHh
Confidence 45667788899998 88765432 23221 122222 2589999999865 34444444555554
No 317
>PRK13558 bacterio-opsin activator; Provisional
Probab=47.16 E-value=1e+02 Score=28.32 Aligned_cols=75 Identities=9% Similarity=0.034 Sum_probs=41.6
Q ss_pred CcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCCC
Q 037843 13 NPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELGPT 91 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~~~ 91 (203)
.+|+|+|........+.+.++.. |..+........-...+....+|.||+--. .|...+ ...+.++.....
T Consensus 8 ~~ILivdd~~~~~~~l~~~l~~~------~~~v~~~~~~~~al~~~~~~~~Dlvl~d~~--lp~~~g~~~l~~l~~~~~~ 79 (665)
T PRK13558 8 RGVLFVGDDPEAGPVDCDLDEDG------RLDVTQIRDFVAARDRVEAGEIDCVVADHE--PDGFDGLALLEAVRQTTAV 79 (665)
T ss_pred eeEEEEccCcchHHHHHHHhhcc------CcceEeeCCHHHHHHHhhccCCCEEEEecc--CCCCcHHHHHHHHHhcCCC
Confidence 57999998777777777777666 766544322111112222335788887221 222222 234555555567
Q ss_pred Ccee
Q 037843 92 MPLF 95 (203)
Q Consensus 92 ~Pil 95 (203)
+|++
T Consensus 80 ~piI 83 (665)
T PRK13558 80 PPVV 83 (665)
T ss_pred CCEE
Confidence 8988
No 318
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=46.22 E-value=1.1e+02 Score=24.08 Aligned_cols=32 Identities=16% Similarity=0.368 Sum_probs=19.1
Q ss_pred CceEEEEeCCccc------HHHHhccCCCEEEECCCCC
Q 037843 42 GYHFEVYRNDELT------VAELKRKKPRGVVISPGPG 73 (203)
Q Consensus 42 g~~~~v~~~~~~~------~~~l~~~~~dgiil~GG~~ 73 (203)
|+.+.+....... .+.+...++||||+.++..
T Consensus 29 g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~~~ 66 (273)
T cd01541 29 GYSLLLASTNNDPERERKCLENMLSQGIDGLIIEPTKS 66 (273)
T ss_pred CCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecccc
Confidence 8888776543111 1123345899999977543
No 319
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=46.00 E-value=1.2e+02 Score=22.55 Aligned_cols=42 Identities=21% Similarity=0.324 Sum_probs=22.6
Q ss_pred HHHHHHHHhhhhhcCCceEEEEeCCcccHHHHh----c--cCCCEEEECCCC
Q 037843 27 NLCQYMGELELELSQGYHFEVYRNDELTVAELK----R--KKPRGVVISPGP 72 (203)
Q Consensus 27 ~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~----~--~~~dgiil~GG~ 72 (203)
.+.+.+++..++ .|+.++....+ .+.++. . .++|||||=+|.
T Consensus 30 ~i~~~~~~~a~~--~g~~~~~~QSN--~EGelId~i~~a~~~~dgiIINpga 77 (146)
T PRK13015 30 DVEALCRAAAEA--LGLEVEFRQSN--HEGELIDWIHEARGDVAGIVINPGA 77 (146)
T ss_pred HHHHHHHHHHHH--cCCEEEEEeeC--cHHHHHHHHHHhhhcCCEEEEcchH
Confidence 344444443211 18888876554 223322 1 257999996654
No 320
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=45.74 E-value=1.7e+02 Score=24.01 Aligned_cols=73 Identities=18% Similarity=0.106 Sum_probs=37.5
Q ss_pred cEEEEeCCchH--------HHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhc-cCCCEEEECCCCCCCCCcchHHHH
Q 037843 14 PIVVIDNYDSF--------TYNLCQYMGELELELSQGYHFEVYRNDELTVAELKR-KKPRGVVISPGPGAPQESGISFRT 84 (203)
Q Consensus 14 ~i~iid~~~~~--------~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~-~~~dgiil~GG~~~~~~~~~~~~~ 84 (203)
||+||--+.|. ...+.++|++. |.++..+..+..-...+.. .++|.++..- .|.....+.+..+
T Consensus 2 ~v~v~~gg~s~e~~~sl~s~~~i~~al~~~------g~~~~~i~~~~~~~~~~~~~~~~D~v~~~~-~g~~ge~~~~~~~ 74 (299)
T PRK14571 2 RVALLMGGVSREREISLRSGERVKKALEKL------GYEVTVFDVDEDFLKKVDQLKSFDVVFNVL-HGTFGEDGTLQAI 74 (299)
T ss_pred eEEEEeCCCCCCccchHHHHHHHHHHHHHc------CCeEEEEccCchHHHHhhhccCCCEEEEeC-CCCCCCccHHHHH
Confidence 68888554433 23466778877 9998887643211222221 2578776421 2222223333333
Q ss_pred HHHhCCCCcee
Q 037843 85 VLELGPTMPLF 95 (203)
Q Consensus 85 i~~~~~~~Pil 95 (203)
+..+ ++|++
T Consensus 75 le~~--gip~~ 83 (299)
T PRK14571 75 LDFL--GIRYT 83 (299)
T ss_pred HHHc--CCCcc
Confidence 3333 36766
No 321
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=45.35 E-value=89 Score=24.89 Aligned_cols=30 Identities=17% Similarity=0.251 Sum_probs=17.3
Q ss_pred CceEEEEeCCccc-----HHHHhccCCCEEEECCC
Q 037843 42 GYHFEVYRNDELT-----VAELKRKKPRGVVISPG 71 (203)
Q Consensus 42 g~~~~v~~~~~~~-----~~~l~~~~~dgiil~GG 71 (203)
|+.+.++..++.. ...+...++||||+.+.
T Consensus 29 g~~~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~ 63 (289)
T cd01540 29 GFTVVKIDVPDGEKVLSAIDNLGAQGAKGFVICVP 63 (289)
T ss_pred CCEEEEccCCCHHHHHHHHHHHHHcCCCEEEEccC
Confidence 8888776543111 11122347999999763
No 322
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=45.06 E-value=1.6e+02 Score=23.66 Aligned_cols=55 Identities=20% Similarity=0.325 Sum_probs=28.8
Q ss_pred CCCCCcEEEEe--CCchHHHHH----HHHHHHhhhhhcCCceEEEEeCCcccH-------HHHhccCCCEEEECC
Q 037843 9 KNDKNPIVVID--NYDSFTYNL----CQYMGELELELSQGYHFEVYRNDELTV-------AELKRKKPRGVVISP 70 (203)
Q Consensus 9 ~~~~~~i~iid--~~~~~~~~l----~~~l~~~~~~~~~g~~~~v~~~~~~~~-------~~l~~~~~dgiil~G 70 (203)
++....|.+|- ..+.|...+ .+.+++. |+.+.+.... .+. +.+...++||+|+.+
T Consensus 23 ~~~~~~I~vi~~~~~~~f~~~~~~~i~~~~~~~------G~~~~~~~~~-~d~~~~~~~~~~l~~~~~dgiii~~ 90 (295)
T PRK10653 23 AMAKDTIALVVSTLNNPFFVSLKDGAQKEADKL------GYNLVVLDSQ-NNPAKELANVQDLTVRGTKILLINP 90 (295)
T ss_pred cccCCeEEEEecCCCChHHHHHHHHHHHHHHHc------CCeEEEecCC-CCHHHHHHHHHHHHHcCCCEEEEcC
Confidence 33455676553 333343333 3444554 8888775432 111 122233789999965
No 323
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=45.02 E-value=1.9e+02 Score=25.20 Aligned_cols=32 Identities=16% Similarity=0.259 Sum_probs=22.6
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRN 50 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~ 50 (203)
.++|+|+..+.+ .-..+++|.+. |+.+.+...
T Consensus 5 ~~~~~v~G~g~~-G~~~a~~l~~~------g~~v~~~d~ 36 (445)
T PRK04308 5 NKKILVAGLGGT-GISMIAYLRKN------GAEVAAYDA 36 (445)
T ss_pred CCEEEEECCCHH-HHHHHHHHHHC------CCEEEEEeC
Confidence 467999988743 33357888888 888777653
No 324
>PLN02699 Bifunctional molybdopterin adenylyltransferase/molybdopterin molybdenumtransferase
Probab=45.00 E-value=88 Score=29.31 Aligned_cols=45 Identities=11% Similarity=-0.076 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhhhhhcCCceEEEEe--CCccc-H-HHHhc---cCCCEEEECCCCCC
Q 037843 24 FTYNLCQYMGELELELSQGYHFEVYR--NDELT-V-AELKR---KKPRGVVISPGPGA 74 (203)
Q Consensus 24 ~~~~l~~~l~~~~~~~~~g~~~~v~~--~~~~~-~-~~l~~---~~~dgiil~GG~~~ 74 (203)
+...+..++++. |+.+..+. .|+.. . +.+.. .++|.||++||.+.
T Consensus 210 N~~~L~a~l~~~------G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DlvItTGGts~ 261 (659)
T PLN02699 210 NRAMLLAAAIQQ------QCKVVDLGIARDDEEELERILDEAISSGVDILLTSGGVSM 261 (659)
T ss_pred hHHHHHHHHHHC------CCEEEEEEEeCCCHHHHHHHHHHhhcCCCCEEEECCCCCC
Confidence 456788888888 88776432 22211 1 12221 25899999998653
No 325
>PRK11914 diacylglycerol kinase; Reviewed
Probab=44.86 E-value=58 Score=26.95 Aligned_cols=41 Identities=15% Similarity=0.148 Sum_probs=24.1
Q ss_pred HHHHHHHhhhhhcCCceEEEEeCCc-ccHHHH----hccCCCEEEECCCCCC
Q 037843 28 LCQYMGELELELSQGYHFEVYRNDE-LTVAEL----KRKKPRGVVISPGPGA 74 (203)
Q Consensus 28 l~~~l~~~~~~~~~g~~~~v~~~~~-~~~~~l----~~~~~dgiil~GG~~~ 74 (203)
+.+.+++. |..+.++.... .+..++ ....+|.||+.||.|.
T Consensus 31 ~~~~l~~~------g~~~~~~~t~~~~~~~~~a~~~~~~~~d~vvv~GGDGT 76 (306)
T PRK11914 31 AIARLHHR------GVDVVEIVGTDAHDARHLVAAALAKGTDALVVVGGDGV 76 (306)
T ss_pred HHHHHHHc------CCeEEEEEeCCHHHHHHHHHHHHhcCCCEEEEECCchH
Confidence 44556565 88876654321 112222 2236799999999885
No 326
>PLN02929 NADH kinase
Probab=44.82 E-value=76 Score=26.66 Aligned_cols=55 Identities=16% Similarity=0.213 Sum_probs=33.4
Q ss_pred HHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCCcee
Q 037843 26 YNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGISFRTVLELGPTMPLF 95 (203)
Q Consensus 26 ~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~~~~~~Pil 95 (203)
..+.++|++. |+.+..+...+. .+.+ .++|.||..||.|. +....+.+..++|||
T Consensus 37 ~~~~~~L~~~------gi~~~~v~r~~~-~~~~--~~~Dlvi~lGGDGT------~L~aa~~~~~~iPvl 91 (301)
T PLN02929 37 NFCKDILQQK------SVDWECVLRNEL-SQPI--RDVDLVVAVGGDGT------LLQASHFLDDSIPVL 91 (301)
T ss_pred HHHHHHHHHc------CCEEEEeecccc-cccc--CCCCEEEEECCcHH------HHHHHHHcCCCCcEE
Confidence 3455677776 888865432211 1112 26799999999663 344444455679999
No 327
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=44.82 E-value=1.2e+02 Score=24.03 Aligned_cols=39 Identities=5% Similarity=0.144 Sum_probs=22.6
Q ss_pred HHHHHHHHhhhhhcCCceEEEEeCCcccH------HHHhccCCCEEEECCC
Q 037843 27 NLCQYMGELELELSQGYHFEVYRNDELTV------AELKRKKPRGVVISPG 71 (203)
Q Consensus 27 ~l~~~l~~~~~~~~~g~~~~v~~~~~~~~------~~l~~~~~dgiil~GG 71 (203)
.+.+++++. |+.+.+...+.... ..+...++||||+.+.
T Consensus 20 ~~~~~a~~~------g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 64 (273)
T cd06309 20 SIKDAAEKR------GFDLKFADAQQKQENQISAIRSFIAQGVDVIILAPV 64 (273)
T ss_pred HHHHHHHhc------CCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 344555555 99988875432111 1222347999999764
No 328
>cd06272 PBP1_hexuronate_repressor_like Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor
Probab=44.59 E-value=1.2e+02 Score=23.70 Aligned_cols=30 Identities=23% Similarity=0.318 Sum_probs=17.5
Q ss_pred CceEEEEeCCc-c-cHHHHhccCCCEEEECCC
Q 037843 42 GYHFEVYRNDE-L-TVAELKRKKPRGVVISPG 71 (203)
Q Consensus 42 g~~~~v~~~~~-~-~~~~l~~~~~dgiil~GG 71 (203)
|+.+.+..... . ..+.+...++||||+.+.
T Consensus 29 g~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~ 60 (261)
T cd06272 29 GYNMNVSITPSLAEAEDLFKENRFDGVIIFGE 60 (261)
T ss_pred CCEEEEEecccHHHHHHHHHHcCcCEEEEeCC
Confidence 88887764321 1 122233347999999753
No 329
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=44.05 E-value=1.9e+02 Score=25.11 Aligned_cols=83 Identities=14% Similarity=0.147 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhhhhhcCCceEEEEeCCcccHHH---HhccCCCEEEECCCCCCCCCcch-HH---HHH-HHhCCCCcee-
Q 037843 25 TYNLCQYMGELELELSQGYHFEVYRNDELTVAE---LKRKKPRGVVISPGPGAPQESGI-SF---RTV-LELGPTMPLF- 95 (203)
Q Consensus 25 ~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~---l~~~~~dgiil~GG~~~~~~~~~-~~---~~i-~~~~~~~Pil- 95 (203)
++.-.++|++.. +.++.+--. .+.++ ..+..+|+|+++|-.|...+... .. ..+ +.+..++||+
T Consensus 212 tW~di~wlr~~~-----~~PiivKgV--~~~~dA~~a~~~Gvd~I~VsnhGGrqld~~~~t~~~L~ei~~av~~~~~vi~ 284 (367)
T PLN02493 212 SWKDVQWLQTIT-----KLPILVKGV--LTGEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFL 284 (367)
T ss_pred CHHHHHHHHhcc-----CCCEEeecC--CCHHHHHHHHHcCCCEEEECCCCCCCCCCchhHHHHHHHHHHHhCCCCeEEE
Confidence 444456777653 566544322 23333 33458999999888775434331 22 223 3345679999
Q ss_pred ----ehhHHHH-HHHhCCeecccc
Q 037843 96 ----CMGLKCI-GEALEGRLYVLL 114 (203)
Q Consensus 96 ----ClG~Qll-a~a~gg~v~~~~ 114 (203)
..|..++ +.++|++..-..
T Consensus 285 dGGIr~G~Dv~KALALGA~aV~iG 308 (367)
T PLN02493 285 DGGVRRGTDVFKALALGASGIFIG 308 (367)
T ss_pred eCCcCcHHHHHHHHHcCCCEEEEc
Confidence 6788776 558898766543
No 330
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=43.84 E-value=48 Score=23.25 Aligned_cols=85 Identities=8% Similarity=0.121 Sum_probs=46.2
Q ss_pred CcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCccc-HHHHhccCCCEEEECCCCCCCCCc---chHHHHHHHh
Q 037843 13 NPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELT-VAELKRKKPRGVVISPGPGAPQES---GISFRTVLEL 88 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~-~~~l~~~~~dgiil~GG~~~~~~~---~~~~~~i~~~ 88 (203)
+||||++.+. ..-.+.+.++++ |++...+.++..+ .-+.. ..|-+++-|+......+ +.+.+++++.
T Consensus 3 kkvLIanrGe-ia~r~~ra~r~~------Gi~tv~v~s~~d~~s~~~~--~ad~~~~~~~~~~~~~yl~~e~I~~ia~~~ 73 (110)
T PF00289_consen 3 KKVLIANRGE-IAVRIIRALREL------GIETVAVNSNPDTVSTHVD--MADEAYFEPPGPSPESYLNIEAIIDIARKE 73 (110)
T ss_dssp SEEEESS-HH-HHHHHHHHHHHT------TSEEEEEEEGGGTTGHHHH--HSSEEEEEESSSGGGTTTSHHHHHHHHHHT
T ss_pred CEEEEECCCH-HHHHHHHHHHHh------CCcceeccCchhccccccc--ccccceecCcchhhhhhccHHHHhhHhhhh
Confidence 5778877653 456677888998 9998877543211 11222 23666554532222222 2334444432
Q ss_pred CCCCcee-ehhHHHHHHHhC
Q 037843 89 GPTMPLF-CMGLKCIGEALE 107 (203)
Q Consensus 89 ~~~~Pil-ClG~Qlla~a~g 107 (203)
.-..++ .+|+.-.+..|.
T Consensus 74 -g~~~i~pGyg~lse~~~fa 92 (110)
T PF00289_consen 74 -GADAIHPGYGFLSENAEFA 92 (110)
T ss_dssp -TESEEESTSSTTTTHHHHH
T ss_pred -cCcccccccchhHHHHHHH
Confidence 335666 888776655543
No 331
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=43.71 E-value=1.1e+02 Score=24.04 Aligned_cols=29 Identities=24% Similarity=0.355 Sum_probs=17.3
Q ss_pred CceEEEEeCCcccH-------HHHhccCCCEEEECCC
Q 037843 42 GYHFEVYRNDELTV-------AELKRKKPRGVVISPG 71 (203)
Q Consensus 42 g~~~~v~~~~~~~~-------~~l~~~~~dgiil~GG 71 (203)
|+.+.++... .+. ..+...++||||+.+.
T Consensus 29 g~~~~~~~~~-~~~~~~~~~i~~~~~~~~dgiii~~~ 64 (277)
T cd06319 29 GYDAVELSAE-NSAKKELENLRTAIDKGVSGIIISPT 64 (277)
T ss_pred CCeEEEecCC-CCHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 8888776543 121 1223347999999653
No 332
>PRK09581 pleD response regulator PleD; Reviewed
Probab=43.44 E-value=65 Score=27.55 Aligned_cols=51 Identities=16% Similarity=0.143 Sum_probs=31.9
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEE
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVI 68 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil 68 (203)
+.+|+|++........+.+.++.. |..+............+....+|.||+
T Consensus 2 ~~~ilii~~~~~~~~~l~~~l~~~------~~~v~~~~~~~~~~~~~~~~~~dlvi~ 52 (457)
T PRK09581 2 TARILVVDDIPANVKLLEAKLLAE------YYTVLTASSGAEAIAICEREQPDIILL 52 (457)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhC------CCEEEEeCCHHHHHHHHhhcCCCEEEE
Confidence 357999998777777788888766 777654422111122233335888887
No 333
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=43.29 E-value=1.3e+02 Score=25.34 Aligned_cols=73 Identities=12% Similarity=0.058 Sum_probs=36.2
Q ss_pred CCcEEEEeCC--chHHHHH----HHHHHHhhhhhcCCceEEEEeCCcccH-------HHHhccCCCEEEECCCCCCCCCc
Q 037843 12 KNPIVVIDNY--DSFTYNL----CQYMGELELELSQGYHFEVYRNDELTV-------AELKRKKPRGVVISPGPGAPQES 78 (203)
Q Consensus 12 ~~~i~iid~~--~~~~~~l----~~~l~~~~~~~~~g~~~~v~~~~~~~~-------~~l~~~~~dgiil~GG~~~~~~~ 78 (203)
..+|++|-.. ..|-..+ .++.++. |+.+.+....+.+. +.+...++|||++++. +.
T Consensus 23 ~~~i~~v~k~~~~pf~~~~~~Gi~~aa~~~------G~~v~~~~~~~~d~~~q~~~i~~li~~~vdgIiv~~~-----d~ 91 (336)
T PRK15408 23 AERIAFIPKLVGVGFFTSGGNGAKEAGKEL------GVDVTYDGPTEPSVSGQVQLINNFVNQGYNAIIVSAV-----SP 91 (336)
T ss_pred CcEEEEEECCCCCHHHHHHHHHHHHHHHHh------CCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEecC-----CH
Confidence 4677777432 2333333 3444444 88887632221221 2233348999999642 23
Q ss_pred chHHHHHHHh-CCCCcee
Q 037843 79 GISFRTVLEL-GPTMPLF 95 (203)
Q Consensus 79 ~~~~~~i~~~-~~~~Pil 95 (203)
..+...+++. ..++|++
T Consensus 92 ~al~~~l~~a~~~gIpVV 109 (336)
T PRK15408 92 DGLCPALKRAMQRGVKVL 109 (336)
T ss_pred HHHHHHHHHHHHCCCeEE
Confidence 3233444442 3456665
No 334
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=43.28 E-value=1.1e+02 Score=25.95 Aligned_cols=34 Identities=9% Similarity=0.221 Sum_probs=22.3
Q ss_pred CCCEEEECC-CCCCCCCcchHHHHHHH-hCCCCcee
Q 037843 62 KPRGVVISP-GPGAPQESGISFRTVLE-LGPTMPLF 95 (203)
Q Consensus 62 ~~dgiil~G-G~~~~~~~~~~~~~i~~-~~~~~Pil 95 (203)
.++||||-| |.|+......+.+.|++ .++++||.
T Consensus 233 ~~~GiVl~~~G~Gn~p~~~~~~~~l~~~~~~Gi~VV 268 (335)
T PRK09461 233 PVKALILRSYGVGNAPQNPALLQELKEASERGIVVV 268 (335)
T ss_pred CCCEEEEccCCCCCCCCCHHHHHHHHHHHHCCCEEE
Confidence 589999854 33444333446666766 46789998
No 335
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2
Probab=43.10 E-value=36 Score=30.21 Aligned_cols=79 Identities=11% Similarity=0.107 Sum_probs=49.7
Q ss_pred CCcEEEEeCCchH----HHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCC-C-CC---------
Q 037843 12 KNPIVVIDNYDSF----TYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPG-A-PQ--------- 76 (203)
Q Consensus 12 ~~~i~iid~~~~~----~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~-~-~~--------- 76 (203)
+|+|+|+|..+.- ...+.++|++. |+++++.+ +.++... ||.+..||.- + ++
T Consensus 185 ~P~IAIvDf~~~~~~~Ef~~f~~~f~~~------G~~~vI~d-----~~~L~y~--~g~L~~~~~~ID~VyRR~Vt~e~l 251 (445)
T PF14403_consen 185 KPNIAIVDFLEYPTLSEFEVFQRLFEEH------GYDCVICD-----PRDLEYR--DGRLYAGGRPIDAVYRRFVTSELL 251 (445)
T ss_pred CCcEEEEecccCCccchHHHHHHHHHHc------CCceEecC-----hHHceec--CCEEEECCEeeehhhHhhhhHHhh
Confidence 6999999987633 34578889888 99998854 4455532 6666655521 1 11
Q ss_pred -CcchHHHHHHHh-CCCCcee-ehhHHHHH
Q 037843 77 -ESGISFRTVLEL-GPTMPLF-CMGLKCIG 103 (203)
Q Consensus 77 -~~~~~~~~i~~~-~~~~Pil-ClG~Qlla 103 (203)
..+....+++++ ++.++++ -+=-|++.
T Consensus 252 ~~~d~~~~li~Ay~~~av~~vgsfrs~l~h 281 (445)
T PF14403_consen 252 ERYDEVQPLIQAYRDGAVCMVGSFRSQLLH 281 (445)
T ss_pred hccccchHHHHHHhcCCeEEecchhhhhhh
Confidence 112235566664 5678888 66667665
No 336
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=42.48 E-value=1.9e+02 Score=23.63 Aligned_cols=30 Identities=13% Similarity=0.382 Sum_probs=17.9
Q ss_pred CceEEEEeCCccc------HHHHhccCCCEEEECCC
Q 037843 42 GYHFEVYRNDELT------VAELKRKKPRGVVISPG 71 (203)
Q Consensus 42 g~~~~v~~~~~~~------~~~l~~~~~dgiil~GG 71 (203)
|+.+.+...+... .+.+...++||||+.+.
T Consensus 90 gy~~~i~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 125 (327)
T TIGR02417 90 GYQLLIACSDDNPDQEKVVIENLLARQVDALIVASC 125 (327)
T ss_pred CCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 8988776543211 11223347999999764
No 337
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=42.26 E-value=1.6e+02 Score=22.90 Aligned_cols=38 Identities=21% Similarity=0.385 Sum_probs=22.1
Q ss_pred HHHHHHHhhhhhcCCceEEEEeCCcccH---HH----HhccCCCEEEECCC
Q 037843 28 LCQYMGELELELSQGYHFEVYRNDELTV---AE----LKRKKPRGVVISPG 71 (203)
Q Consensus 28 l~~~l~~~~~~~~~g~~~~v~~~~~~~~---~~----l~~~~~dgiil~GG 71 (203)
+.+++++. |+.+.+...+.... .+ +...++||||+.+.
T Consensus 21 i~~~~~~~------g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 65 (270)
T cd01545 21 ALDACRDT------GYQLVIEPCDSGSPDLAERVRALLQRSRVDGVILTPP 65 (270)
T ss_pred HHHHHHhC------CCeEEEEeCCCCchHHHHHHHHHHHHCCCCEEEEeCC
Confidence 44455555 88888775542211 11 22347899999765
No 338
>PF01220 DHquinase_II: Dehydroquinase class II; InterPro: IPR001874 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. Class-II enzymes are homododecameric enzymes of about 17 kDa. They are found in some bacteria such as actinomycetales [, ] and some fungi where they act in a catabolic pathway that allows the use of quinic acid as a carbon source.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 3N8K_J 3N7A_I 3N87_F 3N8N_H 3N86_N 1H0S_A 3N59_J 1H05_A 1H0R_A 2Y71_A ....
Probab=41.98 E-value=1e+02 Score=22.82 Aligned_cols=42 Identities=29% Similarity=0.503 Sum_probs=22.5
Q ss_pred HHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhc------cCCCEEEECCCC
Q 037843 27 NLCQYMGELELELSQGYHFEVYRNDELTVAELKR------KKPRGVVISPGP 72 (203)
Q Consensus 27 ~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~------~~~dgiil~GG~ 72 (203)
.+.+.+++...++ |+.++....+ .+.++.+ .++|||||=+|.
T Consensus 29 ~i~~~~~~~a~~~--g~~v~~~QSN--~EGelid~I~~a~~~~dgiIINpga 76 (140)
T PF01220_consen 29 DIEQKCKETAAEL--GVEVEFFQSN--HEGELIDWIHEARDDVDGIIINPGA 76 (140)
T ss_dssp HHHHHHHHHHHHT--TEEEEEEE-S--SHHHHHHHHHHHTCTTSEEEEE-GG
T ss_pred HHHHHHHHHHHHC--CCeEEEEecC--CHHHHHHHHHHHHhhCCEEEEccch
Confidence 3444444442222 8888887654 2333321 258999996654
No 339
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=41.83 E-value=79 Score=26.83 Aligned_cols=34 Identities=21% Similarity=0.093 Sum_probs=25.0
Q ss_pred CceEEEEeCCcc---cHHHHhccCCCEEEECCCCCCC
Q 037843 42 GYHFEVYRNDEL---TVAELKRKKPRGVVISPGPGAP 75 (203)
Q Consensus 42 g~~~~v~~~~~~---~~~~l~~~~~dgiil~GG~~~~ 75 (203)
.+++.+.|++.. ..+++...++|-|+|-|||-.+
T Consensus 52 NA~Vlttpwg~ynes~~~eI~~lnpd~VLIIGGp~AV 88 (337)
T COG2247 52 NAPVLTTPWGIYNESVLDEIIELNPDLVLIIGGPIAV 88 (337)
T ss_pred CCeeEecCcccccHHHHHHHHhhCCceEEEECCCCcC
Confidence 788876665433 3566777799999999999754
No 340
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=41.53 E-value=1.5e+02 Score=26.86 Aligned_cols=28 Identities=25% Similarity=0.374 Sum_probs=19.0
Q ss_pred CCCEEEECCCCCCCCCcchHHHHHHHh-CCCCcee
Q 037843 62 KPRGVVISPGPGAPQESGISFRTVLEL-GPTMPLF 95 (203)
Q Consensus 62 ~~dgiil~GG~~~~~~~~~~~~~i~~~-~~~~Pil 95 (203)
++|.||..||.|. +....+.+ ...+|||
T Consensus 262 ~~DlVIsiGGDGT------lL~Aar~~~~~~iPIL 290 (508)
T PLN02935 262 KVDLVITLGGDGT------VLWAASMFKGPVPPVV 290 (508)
T ss_pred CCCEEEEECCcHH------HHHHHHHhccCCCcEE
Confidence 5799999999653 34444544 3568888
No 341
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=41.43 E-value=1.4e+02 Score=25.12 Aligned_cols=73 Identities=11% Similarity=0.140 Sum_probs=41.4
Q ss_pred cEEEEeCCchHHH-HHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCC------cchHHHHHH
Q 037843 14 PIVVIDNYDSFTY-NLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQE------SGISFRTVL 86 (203)
Q Consensus 14 ~i~iid~~~~~~~-~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~------~~~~~~~i~ 86 (203)
+|.|.+....+.. .+++.|++. |++++++... ...-+.. ++|.+|+ |..+-..+ .|...-.+-
T Consensus 147 ~V~VtESRP~~eG~~~ak~L~~~------gI~~~~I~Ds--a~~~~~~-~vd~Viv-Gad~I~~nG~lvnkiGT~~lA~~ 216 (301)
T COG1184 147 KVIVTESRPRGEGRIMAKELRQS------GIPVTVIVDS--AVGAFMS-RVDKVLV-GADAILANGALVNKIGTSPLALA 216 (301)
T ss_pred EEEEEcCCCcchHHHHHHHHHHc------CCceEEEech--HHHHHHH-hCCEEEE-CccceecCCcEEeccchHHHHHH
Confidence 5677776666654 466888888 9998887532 1222222 5788888 55432222 222211222
Q ss_pred HhCCCCcee-e
Q 037843 87 ELGPTMPLF-C 96 (203)
Q Consensus 87 ~~~~~~Pil-C 96 (203)
+.+.++|++ |
T Consensus 217 A~e~~~Pf~v~ 227 (301)
T COG1184 217 ARELRVPFYVV 227 (301)
T ss_pred HHHhCCCEEEE
Confidence 234569999 7
No 342
>COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]
Probab=41.37 E-value=60 Score=27.63 Aligned_cols=44 Identities=16% Similarity=0.101 Sum_probs=31.8
Q ss_pred CCCEEEECCCCCCCCCc--chHHHHHHHh-CCCCcee--ehhHHHHHHH
Q 037843 62 KPRGVVISPGPGAPQES--GISFRTVLEL-GPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 62 ~~dgiil~GG~~~~~~~--~~~~~~i~~~-~~~~Pil--ClG~Qlla~a 105 (203)
.+|-|++++|.+..... ..+..++++. .++.++- |-|.-+|+++
T Consensus 76 ~~~~v~v~~g~~~~~~~~~~~l~~~Lr~~~~~G~~l~gictGaf~LA~a 124 (328)
T COG4977 76 PIDILPVCGGLGPERPVNAPALLAWLRRAARRGARLGGLCTGAFVLAEA 124 (328)
T ss_pred cceEEEEecCCCcccccchHHHHHHHHHHHhcCCeEEEehHhHHHHHHh
Confidence 36788887776544333 3467888874 5677877 9999999986
No 343
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=41.34 E-value=1.4e+02 Score=21.82 Aligned_cols=73 Identities=15% Similarity=0.066 Sum_probs=42.1
Q ss_pred eCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHh----ccCCCEEEECCCCCCCC-CcchHHHHHHHhC-CCC
Q 037843 19 DNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELK----RKKPRGVVISPGPGAPQ-ESGISFRTVLELG-PTM 92 (203)
Q Consensus 19 d~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~----~~~~dgiil~GG~~~~~-~~~~~~~~i~~~~-~~~ 92 (203)
|-++--...+...|++. |+++.-+-.+ .+++++. ..++|.|-+|.=-+... ....+.+.+++.. +++
T Consensus 12 D~HdiGk~iv~~~l~~~------GfeVi~LG~~-v~~e~~v~aa~~~~adiVglS~l~~~~~~~~~~~~~~l~~~gl~~~ 84 (134)
T TIGR01501 12 DCHAVGNKILDHAFTNA------GFNVVNLGVL-SPQEEFIKAAIETKADAILVSSLYGHGEIDCKGLRQKCDEAGLEGI 84 (134)
T ss_pred ChhhHhHHHHHHHHHHC------CCEEEECCCC-CCHHHHHHHHHHcCCCEEEEecccccCHHHHHHHHHHHHHCCCCCC
Confidence 55554456677888888 9998877654 5555543 34788888865333211 1222345555532 345
Q ss_pred ceeehh
Q 037843 93 PLFCMG 98 (203)
Q Consensus 93 PilClG 98 (203)
+++|-|
T Consensus 85 ~vivGG 90 (134)
T TIGR01501 85 LLYVGG 90 (134)
T ss_pred EEEecC
Confidence 544755
No 344
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=40.83 E-value=1.1e+02 Score=25.26 Aligned_cols=64 Identities=14% Similarity=0.303 Sum_probs=37.2
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCc---c-hHHHHHHH
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQES---G-ISFRTVLE 87 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~---~-~~~~~i~~ 87 (203)
.-+|++|.--+...+.+.|+|..+. . ..-++ ++.|||+ |.+....+. + .+.+++++
T Consensus 192 ~g~ILflEdv~e~~~~idr~L~qL~------~-----------~G~f~--~~~gii~-G~f~~~~~~~~~~~~~~~il~~ 251 (282)
T cd07025 192 EGKILFLEDVGEPPYRIDRMLTQLK------L-----------AGVLD--KVAGIIL-GRFTDCEDNDDFGYTLEEVLKE 251 (282)
T ss_pred CCCEEEEEcCCCcHhHHHHHHHHHH------H-----------hChhh--cCCEEEE-ecCCCCCCCCCcccCHHHHHHH
Confidence 4567777655555667777776661 0 01122 4689999 666543321 2 24566666
Q ss_pred h--CCCCcee
Q 037843 88 L--GPTMPLF 95 (203)
Q Consensus 88 ~--~~~~Pil 95 (203)
. ..++||+
T Consensus 252 ~~~~~~iPv~ 261 (282)
T cd07025 252 VLGDLGIPVL 261 (282)
T ss_pred HHhcCCCCEE
Confidence 4 3479999
No 345
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=40.73 E-value=1.3e+02 Score=28.88 Aligned_cols=75 Identities=5% Similarity=0.160 Sum_probs=44.7
Q ss_pred CcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCCC
Q 037843 13 NPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELGPT 91 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~~~ 91 (203)
.+|+|+|....+...+.+.|+.. |+.+.....-....+.+....||.||+-- ..|...+ .....+++....
T Consensus 703 ~~iLvvdd~~~~~~~l~~~L~~~------g~~v~~~~~~~~a~~~l~~~~~dlvl~D~--~mp~~~g~~~~~~ir~~~~~ 774 (968)
T TIGR02956 703 QRVLLVEDNEVNQMVAQGFLTRL------GHKVTLAESGQSALECFHQHAFDLALLDI--NLPDGDGVTLLQQLRAIYGA 774 (968)
T ss_pred cceEEEcCcHHHHHHHHHHHHHc------CCEEEEECCHHHHHHHHHCCCCCEEEECC--CCCCCCHHHHHHHHHhCccc
Confidence 47999988777777788888888 88876543211112334344689888822 2233222 234555554222
Q ss_pred ---Ccee
Q 037843 92 ---MPLF 95 (203)
Q Consensus 92 ---~Pil 95 (203)
.||+
T Consensus 775 ~~~~pii 781 (968)
T TIGR02956 775 KNEVKFI 781 (968)
T ss_pred cCCCeEE
Confidence 8988
No 346
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=40.53 E-value=1.5e+02 Score=26.26 Aligned_cols=85 Identities=13% Similarity=0.150 Sum_probs=50.3
Q ss_pred CCcEEEEeCCchH-HHHHHHHHHHhhhhhcCCceEEEEeCC---cccHHHHh-------cc-CCCEEEECCCCCCCCCcc
Q 037843 12 KNPIVVIDNYDSF-TYNLCQYMGELELELSQGYHFEVYRND---ELTVAELK-------RK-KPRGVVISPGPGAPQESG 79 (203)
Q Consensus 12 ~~~i~iid~~~~~-~~~l~~~l~~~~~~~~~g~~~~v~~~~---~~~~~~l~-------~~-~~dgiil~GG~~~~~~~~ 79 (203)
..+|.||..-.+- ...+.+.++.. ...+++.++|.- +....++. .. ++|.||+.=|.|+..|-=
T Consensus 135 p~~IGVITS~tgAairDIl~~~~rR----~P~~~viv~pt~VQG~~A~~eIv~aI~~an~~~~~DvlIVaRGGGSiEDLW 210 (440)
T COG1570 135 PKKIGVITSPTGAALRDILHTLSRR----FPSVEVIVYPTLVQGEGAAEEIVEAIERANQRGDVDVLIVARGGGSIEDLW 210 (440)
T ss_pred CCeEEEEcCCchHHHHHHHHHHHhh----CCCCeEEEEeccccCCCcHHHHHHHHHHhhccCCCCEEEEecCcchHHHHh
Confidence 4579999765432 23444555444 225777777642 11223321 12 589999998888865421
Q ss_pred h--HHHHHHH-hCCCCcee-ehhHH
Q 037843 80 I--SFRTVLE-LGPTMPLF-CMGLK 100 (203)
Q Consensus 80 ~--~~~~i~~-~~~~~Pil-ClG~Q 100 (203)
. -..+.++ ++..+||+ -.||.
T Consensus 211 ~FNdE~vaRAi~~s~iPvISAVGHE 235 (440)
T COG1570 211 AFNDEIVARAIAASRIPVISAVGHE 235 (440)
T ss_pred ccChHHHHHHHHhCCCCeEeecccC
Confidence 1 1234455 35679999 99998
No 347
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=40.23 E-value=1.8e+02 Score=22.74 Aligned_cols=77 Identities=10% Similarity=0.077 Sum_probs=39.8
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccH-HHHh--ccCCCEEEECCCCCCCCCcc-hHHHHHHH
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTV-AELK--RKKPRGVVISPGPGAPQESG-ISFRTVLE 87 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~-~~l~--~~~~dgiil~GG~~~~~~~~-~~~~~i~~ 87 (203)
|.+|+|+|....+...+...++... +..+.....+.... +.+. ...+|.||+--. .+...+ .....+++
T Consensus 1 m~~VLivdd~~~~~~~l~~~L~~~~-----~~~~~~~~~~~~~a~~~~~~~~~~~DlvilD~~--~p~~~G~eli~~l~~ 73 (239)
T PRK10430 1 MINVLIVDDDAMVAELNRRYVAQIP-----GFQCCGTASTLEQAKEIIFNSDTPIDLILLDIY--MQQENGLDLLPVLHE 73 (239)
T ss_pred CeeEEEEcCCHHHHHHHHHHHHhCC-----CceEEEEeCCHHHHHHHHHhcCCCCCEEEEecC--CCCCCcHHHHHHHHh
Confidence 4679999988777677777776531 55443222221111 1222 135788887221 222222 23444554
Q ss_pred hCCCCcee
Q 037843 88 LGPTMPLF 95 (203)
Q Consensus 88 ~~~~~Pil 95 (203)
.....|++
T Consensus 74 ~~~~~~vI 81 (239)
T PRK10430 74 AGCKSDVI 81 (239)
T ss_pred hCCCCCEE
Confidence 44567887
No 348
>PRK14987 gluconate operon transcriptional regulator; Provisional
Probab=40.06 E-value=2e+02 Score=23.60 Aligned_cols=29 Identities=10% Similarity=0.202 Sum_probs=16.7
Q ss_pred CceEEEEeCCc-cc-----HHHHhccCCCEEEECC
Q 037843 42 GYHFEVYRNDE-LT-----VAELKRKKPRGVVISP 70 (203)
Q Consensus 42 g~~~~v~~~~~-~~-----~~~l~~~~~dgiil~G 70 (203)
|+.+.+...+. .. .+.+...++||||+.+
T Consensus 93 g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiI~~~ 127 (331)
T PRK14987 93 GYQTMLAHYGYKPEMEQERLESMLSWNIDGLILTE 127 (331)
T ss_pred CCEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEcC
Confidence 88887754421 11 1122234799999975
No 349
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=40.06 E-value=1.8e+02 Score=22.82 Aligned_cols=30 Identities=20% Similarity=0.287 Sum_probs=16.9
Q ss_pred CceEEEEeCC-cccH-------HHHhccCCCEEEECCC
Q 037843 42 GYHFEVYRND-ELTV-------AELKRKKPRGVVISPG 71 (203)
Q Consensus 42 g~~~~v~~~~-~~~~-------~~l~~~~~dgiil~GG 71 (203)
|+.+.+...+ ..+. +.+...++||||+.+.
T Consensus 29 g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 66 (275)
T cd06320 29 GVSVDIQAAPSEGDQQGQLSIAENMINKGYKGLLFSPI 66 (275)
T ss_pred CCeEEEEccCCCCCHHHHHHHHHHHHHhCCCEEEECCC
Confidence 8888776432 1121 1222347999999654
No 350
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=38.97 E-value=1.5e+02 Score=24.67 Aligned_cols=57 Identities=12% Similarity=-0.111 Sum_probs=30.4
Q ss_pred CCcEEEEe--CCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccH-------HHHhccCCCEEEECCC
Q 037843 12 KNPIVVID--NYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTV-------AELKRKKPRGVVISPG 71 (203)
Q Consensus 12 ~~~i~iid--~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~-------~~l~~~~~dgiil~GG 71 (203)
+.+|.++- ..+.|-..+.+.+++... ..|+.+.+...+. +. ..+...++||||+.+.
T Consensus 25 ~~~Ig~i~~~~~~~f~~~~~~gi~~~a~--~~g~~l~i~~~~~-~~~~~~~~i~~l~~~~vDGiIi~~~ 90 (330)
T PRK10355 25 EVKIGMAIDDLRLERWQKDRDIFVKKAE--SLGAKVFVQSANG-NEETQMSQIENMINRGVDVLVIIPY 90 (330)
T ss_pred CceEEEEecCCCchHHHHHHHHHHHHHH--HcCCEEEEECCCC-CHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 45676663 444454444444433311 1189988775531 22 1223348999999753
No 351
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=38.53 E-value=2.7e+02 Score=24.81 Aligned_cols=31 Identities=13% Similarity=0.124 Sum_probs=24.2
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEe
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYR 49 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~ 49 (203)
+++|+|+..+.+-.. ++++|.+. |..+....
T Consensus 7 ~~~i~v~G~G~sG~s-~a~~L~~~------G~~v~~~D 37 (498)
T PRK02006 7 GPMVLVLGLGESGLA-MARWCARH------GARLRVAD 37 (498)
T ss_pred CCEEEEEeecHhHHH-HHHHHHHC------CCEEEEEc
Confidence 467999998875543 88999998 98887755
No 352
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=38.52 E-value=1.4e+02 Score=21.02 Aligned_cols=51 Identities=20% Similarity=0.301 Sum_probs=27.0
Q ss_pred CCcEEEEeCCc-----hHHHHHHHHHHHhhhhhcCCceEEEEeCC-cccHHHHh--------ccCCCEEEE
Q 037843 12 KNPIVVIDNYD-----SFTYNLCQYMGELELELSQGYHFEVYRND-ELTVAELK--------RKKPRGVVI 68 (203)
Q Consensus 12 ~~~i~iid~~~-----~~~~~l~~~l~~~~~~~~~g~~~~v~~~~-~~~~~~l~--------~~~~dgiil 68 (203)
.++.++|-.++ .|..+..+..+++ |+.+..+... +.+.+++. +.+++||++
T Consensus 29 ~P~Laii~vg~d~~S~~Y~~~k~k~~~~~------Gi~~~~~~l~~~~~~~el~~~i~~lN~D~~V~GIlv 93 (117)
T PF00763_consen 29 TPKLAIILVGDDPASISYVRSKQKAAEKL------GIEFELIELPEDISEEELLELIEKLNEDPSVHGILV 93 (117)
T ss_dssp --EEEEEEES--HHHHHHHHHHHHHHHHH------T-EEEEEEE-TTSSHHHHHHHHHHHHH-TT-SEEEE
T ss_pred CcEEEEEecCCChhHHHHHHHHHHHHHHc------CCceEEEECCCCcCHHHHHHHHHHHhCCCCCCEEEE
Confidence 46666664332 2344566777777 9998877642 34444432 136899987
No 353
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=38.44 E-value=1.9e+02 Score=22.42 Aligned_cols=93 Identities=12% Similarity=0.054 Sum_probs=50.1
Q ss_pred CCcEEEE----eCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHh----ccCCCEEEECCCCCCC-CCcchHH
Q 037843 12 KNPIVVI----DNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELK----RKKPRGVVISPGPGAP-QESGISF 82 (203)
Q Consensus 12 ~~~i~ii----d~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~----~~~~dgiil~GG~~~~-~~~~~~~ 82 (203)
.++|++- |.++--...+...|+.. |+++..+-.+ .+.+++. ..++|.|.+|-.-... .....+.
T Consensus 84 ~~~vv~~t~~gd~H~lG~~~v~~~l~~~------G~~vi~LG~~-vp~e~~v~~~~~~~pd~v~lS~~~~~~~~~~~~~i 156 (197)
T TIGR02370 84 LGKVVCGVAEGDVHDIGKNIVVTMLRAN------GFDVIDLGRD-VPIDTVVEKVKKEKPLMLTGSALMTTTMYGQKDIN 156 (197)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhC------CcEEEECCCC-CCHHHHHHHHHHcCCCEEEEccccccCHHHHHHHH
Confidence 3566555 33332244566777887 9998876554 4555543 3489999997643221 1112234
Q ss_pred HHHHHh--CCCCceeehhHH---HHHHHhCCeec
Q 037843 83 RTVLEL--GPTMPLFCMGLK---CIGEALEGRLY 111 (203)
Q Consensus 83 ~~i~~~--~~~~PilClG~Q---lla~a~gg~v~ 111 (203)
+.+++. ..+++|++-|.. -++..+|++.+
T Consensus 157 ~~l~~~~~~~~v~i~vGG~~~~~~~~~~~gad~~ 190 (197)
T TIGR02370 157 DKLKEEGYRDSVKFMVGGAPVTQDWADKIGADVY 190 (197)
T ss_pred HHHHHcCCCCCCEEEEEChhcCHHHHHHhCCcEE
Confidence 445553 234677644432 34555665543
No 354
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=38.32 E-value=1.9e+02 Score=22.55 Aligned_cols=50 Identities=22% Similarity=0.237 Sum_probs=25.1
Q ss_pred eCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccH-------HHHhccCCCEEEECCC
Q 037843 19 DNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTV-------AELKRKKPRGVVISPG 71 (203)
Q Consensus 19 d~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~-------~~l~~~~~dgiil~GG 71 (203)
+..+.|...+.+.+++... ..|+.+.+.... .+. ..+...++||||+.+.
T Consensus 8 ~~~~~~~~~~~~~i~~~~~--~~g~~~~i~~~~-~~~~~~~~~~~~~~~~~vdgiii~~~ 64 (267)
T cd06322 8 TQQHPFYIELANAMKEEAK--KQKVNLIVSIAN-QDLNKQLSDVEDFITKKVDAIVLSPV 64 (267)
T ss_pred CcccHHHHHHHHHHHHHHH--hcCCEEEEecCC-CCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 3334444444444433311 128888776542 121 1222347999999653
No 355
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=38.31 E-value=1.6e+02 Score=25.75 Aligned_cols=48 Identities=21% Similarity=0.392 Sum_probs=29.6
Q ss_pred EEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEE
Q 037843 15 IVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVI 68 (203)
Q Consensus 15 i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil 68 (203)
|+|||....+...+.+.++.. |..+........-...+....+|.|++
T Consensus 1 ILivdd~~~~~~~l~~~L~~~------g~~v~~~~~~~~al~~~~~~~~DlVll 48 (463)
T TIGR01818 1 VWVVDDDRSIRWVLEKALSRA------GYEVRTFGNAASVLRALARGQPDLLIT 48 (463)
T ss_pred CEEEECCHHHHHHHHHHHHHc------CCEEEEECCHHHHHHHHhcCCCCEEEE
Confidence 578888777777788888877 887654321111112233336788877
No 356
>COG5426 Uncharacterized membrane protein [Function unknown]
Probab=38.25 E-value=37 Score=26.71 Aligned_cols=37 Identities=16% Similarity=0.128 Sum_probs=21.0
Q ss_pred HHHHHHHhhhhhcCCceEEEEeCCc------ccHHHHhccCCCEEEECCCC
Q 037843 28 LCQYMGELELELSQGYHFEVYRNDE------LTVAELKRKKPRGVVISPGP 72 (203)
Q Consensus 28 l~~~l~~~~~~~~~g~~~~v~~~~~------~~~~~l~~~~~dgiil~GG~ 72 (203)
+.++|+.- +++++.-+.-+ .+.+.+. .||+||||-=.
T Consensus 37 Ll~~Lr~g------~~dv~yMpAH~~q~~FPqtme~L~--~YDaivlSDiG 79 (254)
T COG5426 37 LLKALRGG------EYDVTYMPAHDAQEKFPQTMEGLD--AYDAIVLSDIG 79 (254)
T ss_pred HHHHHhCC------CcceEEechHHHHHhcchhhhhhc--ccceEEEeecC
Confidence 44555554 77777655321 1233343 58999996543
No 357
>PRK13557 histidine kinase; Provisional
Probab=38.25 E-value=1.8e+02 Score=25.48 Aligned_cols=76 Identities=14% Similarity=0.195 Sum_probs=43.0
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhcc-CCCEEEECCCCCCCC-Ccc-hHHHHHHHh
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRK-KPRGVVISPGPGAPQ-ESG-ISFRTVLEL 88 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~-~~dgiil~GG~~~~~-~~~-~~~~~i~~~ 88 (203)
+++|+|++........+.+.++.. |+.+..........+.+... .+|.+|+--. .+. ..+ .....++..
T Consensus 415 ~~~iliv~~~~~~~~~l~~~l~~~------~~~v~~~~~~~~~~~~~~~~~~~d~vi~d~~--~~~~~~~~~~~~~l~~~ 486 (540)
T PRK13557 415 TETILIVDDRPDVAELARMILEDF------GYRTLVASNGREALEILDSHPEVDLLFTDLI--MPGGMNGVMLAREARRR 486 (540)
T ss_pred CceEEEEcCcHHHHHHHHHHHHhc------CCeEEEeCCHHHHHHHHhcCCCceEEEEecc--CCCCCCHHHHHHHHHHh
Confidence 467999998877777888888877 88776432211111223222 4788877321 121 111 234445554
Q ss_pred CCCCcee
Q 037843 89 GPTMPLF 95 (203)
Q Consensus 89 ~~~~Pil 95 (203)
....|++
T Consensus 487 ~~~~~ii 493 (540)
T PRK13557 487 QPKIKVL 493 (540)
T ss_pred CCCCcEE
Confidence 4567877
No 358
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=38.06 E-value=1.9e+02 Score=22.41 Aligned_cols=29 Identities=21% Similarity=0.534 Sum_probs=18.0
Q ss_pred CceEEEEeCCcccH-------HHHhccCCCEEEECCC
Q 037843 42 GYHFEVYRNDELTV-------AELKRKKPRGVVISPG 71 (203)
Q Consensus 42 g~~~~v~~~~~~~~-------~~l~~~~~dgiil~GG 71 (203)
|+.+.+...+ .+. +.+...++||+|+.+.
T Consensus 29 g~~~~~~~~~-~~~~~~~~~i~~l~~~~~dgii~~~~ 64 (259)
T cd01542 29 GYQMLLMNTN-FSIEKEIEALELLARQKVDGIILLAT 64 (259)
T ss_pred CCEEEEEeCC-CCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 8988776543 112 2223347999999764
No 359
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=38.01 E-value=1.9e+02 Score=22.52 Aligned_cols=36 Identities=17% Similarity=0.267 Sum_probs=20.8
Q ss_pred HHHHHHHhhhhhcCCceEEEEeCCcccHH-------HHhccCCCEEEECC
Q 037843 28 LCQYMGELELELSQGYHFEVYRNDELTVA-------ELKRKKPRGVVISP 70 (203)
Q Consensus 28 l~~~l~~~~~~~~~g~~~~v~~~~~~~~~-------~l~~~~~dgiil~G 70 (203)
+.+.+++. |..+.+...+. +.+ .+....+||||+.+
T Consensus 21 i~~~~~~~------~~~~~~~~~~~-~~~~~~~~i~~l~~~~~dgiii~~ 63 (265)
T cd06285 21 IEEAAAER------GYSTFVANTGD-NPDAQRRAIEMLLDRRVDGLILGD 63 (265)
T ss_pred HHHHHHHC------CCEEEEEeCCC-CHHHHHHHHHHHHHcCCCEEEEec
Confidence 44555555 88876655431 211 22234799999965
No 360
>COG3155 ElbB Uncharacterized protein involved in an early stage of isoprenoid biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=37.99 E-value=44 Score=25.51 Aligned_cols=50 Identities=14% Similarity=0.135 Sum_probs=35.2
Q ss_pred CCCEEEECCCCCCCCCc-------------chHHHHHHHh-CCCCcee--ehhHHHHHHHhCCeec
Q 037843 62 KPRGVVISPGPGAPQES-------------GISFRTVLEL-GPTMPLF--CMGLKCIGEALEGRLY 111 (203)
Q Consensus 62 ~~dgiil~GG~~~~~~~-------------~~~~~~i~~~-~~~~Pil--ClG~Qlla~a~gg~v~ 111 (203)
.+|++|++||.|..... ..+..+.+.+ ..++|+= |.-=-|+...+|..+.
T Consensus 85 ~~DALivPGGFGAAKNLsdFA~kGaeC~v~pDv~al~~a~~~agKP~G~iCIaP~m~pki~g~~~~ 150 (217)
T COG3155 85 ELDALIVPGGFGAAKNLSDFASKGAECSVDPDLKALAQAMHQAGKPLGFMCIAPAMLPKIFGFPLR 150 (217)
T ss_pred hcceeeccCccchhhhhHHHhccCccceeCHHHHHHHHHHHHhCCCceEEEecHHHHHHHcCCcee
Confidence 57999999999864321 1234555554 5679985 9999999988886543
No 361
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=37.90 E-value=1.8e+02 Score=22.96 Aligned_cols=78 Identities=17% Similarity=0.077 Sum_probs=43.8
Q ss_pred CCcEEEE----eCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHh----ccCCCEEEECCCCCCC-CCcchHH
Q 037843 12 KNPIVVI----DNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELK----RKKPRGVVISPGPGAP-QESGISF 82 (203)
Q Consensus 12 ~~~i~ii----d~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~----~~~~dgiil~GG~~~~-~~~~~~~ 82 (203)
..+|++- |.++--...+...|+.. |+++..+-.+ .+.+++. ..++|.|.+|..-... .....+.
T Consensus 88 ~~~vvl~t~~gd~HdiG~~iv~~~l~~~------G~~Vi~LG~~-vp~e~~v~~~~~~~~~~V~lS~~~~~~~~~~~~~i 160 (213)
T cd02069 88 KGKIVLATVKGDVHDIGKNLVGVILSNN------GYEVIDLGVM-VPIEKILEAAKEHKADIIGLSGLLVPSLDEMVEVA 160 (213)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhC------CCEEEECCCC-CCHHHHHHHHHHcCCCEEEEccchhccHHHHHHHH
Confidence 4666665 33332234455677777 9999877654 5555543 3478999996653211 1112234
Q ss_pred HHHHHhCCCCceee
Q 037843 83 RTVLELGPTMPLFC 96 (203)
Q Consensus 83 ~~i~~~~~~~PilC 96 (203)
+.+++...++||++
T Consensus 161 ~~L~~~~~~~~i~v 174 (213)
T cd02069 161 EEMNRRGIKIPLLI 174 (213)
T ss_pred HHHHhcCCCCeEEE
Confidence 44444444677773
No 362
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=37.74 E-value=1.8e+02 Score=25.57 Aligned_cols=85 Identities=12% Similarity=0.107 Sum_probs=48.6
Q ss_pred CCcEEEEeCCchH-HHHHHHHHHHhhhhhcCCceEEEEeCC---cccHHHHh-------ccCCCEEEECCCCCCCCCcch
Q 037843 12 KNPIVVIDNYDSF-TYNLCQYMGELELELSQGYHFEVYRND---ELTVAELK-------RKKPRGVVISPGPGAPQESGI 80 (203)
Q Consensus 12 ~~~i~iid~~~~~-~~~l~~~l~~~~~~~~~g~~~~v~~~~---~~~~~~l~-------~~~~dgiil~GG~~~~~~~~~ 80 (203)
..+|+||....+- .+-+.+.++.. ..++++.++|.- +..+.++. ...+|.|||.=|.|+..|--.
T Consensus 135 p~~I~viTs~~gAa~~D~~~~~~~r----~p~~~~~~~~~~vQG~~A~~~i~~al~~~~~~~~Dviii~RGGGS~eDL~~ 210 (438)
T PRK00286 135 PKRIGVITSPTGAAIRDILTVLRRR----FPLVEVIIYPTLVQGEGAAASIVAAIERANARGEDVLIVARGGGSLEDLWA 210 (438)
T ss_pred CCEEEEEeCCccHHHHHHHHHHHhc----CCCCeEEEecCcCcCccHHHHHHHHHHHhcCCCCCEEEEecCCCCHHHhhc
Confidence 4689999766543 23344445444 225677776642 11222322 113799999888887554321
Q ss_pred H--HHHHHH-hCCCCcee-ehhHH
Q 037843 81 S--FRTVLE-LGPTMPLF-CMGLK 100 (203)
Q Consensus 81 ~--~~~i~~-~~~~~Pil-ClG~Q 100 (203)
+ ..+.++ +.-.+||+ --||.
T Consensus 211 Fn~e~v~~ai~~~~~Pvis~IGHE 234 (438)
T PRK00286 211 FNDEAVARAIAASRIPVISAVGHE 234 (438)
T ss_pred cCcHHHHHHHHcCCCCEEEeccCC
Confidence 1 233444 24569999 99998
No 363
>PF02016 Peptidase_S66: LD-carboxypeptidase; InterPro: IPR003507 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This signature is found in the Escherichia coli microcin C7 self-immunity protein mccF and in muramoyltetrapeptide carboxypeptidase (3.4.17.13 from EC, LD-carboxypeptidase A). LD-carboxypeptidase A belongs to MEROPS peptidase family S66 (clan SS). The entry also contains uncharacterised proteins including hypothetical proteins from various bacteria archaea.; PDB: 1ZRS_A 1ZL0_B 2AUM_B 2AUN_B 3TLG_A 3TLC_A 3TLZ_B 3TLY_B 3TLE_A 3TLB_B ....
Probab=37.67 E-value=39 Score=27.90 Aligned_cols=68 Identities=15% Similarity=0.268 Sum_probs=39.2
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCC----CCcchHHHHHHH
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAP----QESGISFRTVLE 87 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~----~~~~~~~~~i~~ 87 (203)
+-+|++|...+...+.+.|+|..+. .+ | -++ ++.|||+ |.+... .....+.+++++
T Consensus 192 ~g~ILflEd~~e~~y~idR~L~~L~--~a-G--------------~f~--~i~Giil-G~f~~~~~~~~~~~~~~~vi~~ 251 (284)
T PF02016_consen 192 KGKILFLEDVGEDPYRIDRMLTQLK--LA-G--------------VFD--NIAGIIL-GRFTDCDDDEEFGESLEDVIRE 251 (284)
T ss_dssp TTEEEEEEEESTBHHHHHHHHHHHH--HT-T--------------TGG--C-SEEEE-EEEETGSBGTTSCCHHHHHHHH
T ss_pred CCcEEEEECCCCCHHHHHHHHHHHh--cc-c--------------ccc--CCCEEEE-cCccccCCCCCccHHHHHHHHH
Confidence 4568888655555778888777761 00 1 122 5689999 555433 112235667776
Q ss_pred h--CCCCcee---ehhH
Q 037843 88 L--GPTMPLF---CMGL 99 (203)
Q Consensus 88 ~--~~~~Pil---ClG~ 99 (203)
. ..++||+ -+||
T Consensus 252 ~~~~~~~Pv~~~~~~GH 268 (284)
T PF02016_consen 252 FLGDLDIPVLYGLPFGH 268 (284)
T ss_dssp HHCCCTS-EEEEESCSS
T ss_pred HHhcCCCcEEECCCCcC
Confidence 3 5679999 4555
No 364
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=37.61 E-value=1.1e+02 Score=26.70 Aligned_cols=61 Identities=15% Similarity=0.267 Sum_probs=35.5
Q ss_pred CcEEEE-eCC---chHHHHHHHHHHHhhhhhcCCceEEEEeCC--cccHH-------HHhccCCCEEEECCCCCCCCCcc
Q 037843 13 NPIVVI-DNY---DSFTYNLCQYMGELELELSQGYHFEVYRND--ELTVA-------ELKRKKPRGVVISPGPGAPQESG 79 (203)
Q Consensus 13 ~~i~ii-d~~---~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~--~~~~~-------~l~~~~~dgiil~GG~~~~~~~~ 79 (203)
.|++|| |.+ .++...+.+.|+.. |+.+.++..- +.+.+ .+...++|.||=.|| ||+-|..
T Consensus 30 ~r~liVTd~~~~~~g~~~~v~~~L~~~------~i~~~if~~v~p~P~~~~v~~~~~~~~~~~~D~iIalGG-GS~~D~A 102 (377)
T COG1454 30 KRALIVTDRGLAKLGLLDKVLDSLDAA------GIEYEVFDEVEPEPTIETVEAGAEVAREFGPDTIIALGG-GSVIDAA 102 (377)
T ss_pred CceEEEECCccccchhHHHHHHHHHhc------CCeEEEecCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCC-ccHHHHH
Confidence 677777 443 23455566677776 8777665321 12222 234468999997777 4554544
Q ss_pred h
Q 037843 80 I 80 (203)
Q Consensus 80 ~ 80 (203)
+
T Consensus 103 K 103 (377)
T COG1454 103 K 103 (377)
T ss_pred H
Confidence 3
No 365
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=37.49 E-value=1.5e+02 Score=21.50 Aligned_cols=73 Identities=15% Similarity=0.066 Sum_probs=42.1
Q ss_pred eCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHh----ccCCCEEEECCCCCCCC-CcchHHHHHHHhC-CCC
Q 037843 19 DNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELK----RKKPRGVVISPGPGAPQ-ESGISFRTVLELG-PTM 92 (203)
Q Consensus 19 d~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~----~~~~dgiil~GG~~~~~-~~~~~~~~i~~~~-~~~ 92 (203)
|-++--...+...|+.. |+++.-+-.+ .+++++. ..++|.|-+|.=-+... ....+.+.+++.. +++
T Consensus 10 D~HdiGkniv~~~L~~~------GfeVidLG~~-v~~e~~v~aa~~~~adiVglS~L~t~~~~~~~~~~~~l~~~gl~~v 82 (128)
T cd02072 10 DCHAVGNKILDHAFTEA------GFNVVNLGVL-SPQEEFIDAAIETDADAILVSSLYGHGEIDCKGLREKCDEAGLKDI 82 (128)
T ss_pred chhHHHHHHHHHHHHHC------CCEEEECCCC-CCHHHHHHHHHHcCCCEEEEeccccCCHHHHHHHHHHHHHCCCCCC
Confidence 44443345566788888 9998776554 4555543 23788888866333221 1223455566542 467
Q ss_pred ceeehh
Q 037843 93 PLFCMG 98 (203)
Q Consensus 93 PilClG 98 (203)
|++|-|
T Consensus 83 ~vivGG 88 (128)
T cd02072 83 LLYVGG 88 (128)
T ss_pred eEEEEC
Confidence 777533
No 366
>COG4607 CeuA ABC-type enterochelin transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=37.17 E-value=77 Score=26.70 Aligned_cols=19 Identities=21% Similarity=0.373 Sum_probs=13.8
Q ss_pred cHHHHhccCCCEEEECCCCC
Q 037843 54 TVAELKRKKPRGVVISPGPG 73 (203)
Q Consensus 54 ~~~~l~~~~~dgiil~GG~~ 73 (203)
+.+.+...++|.||+ ||..
T Consensus 110 D~Eai~a~kPdLIIi-ggR~ 128 (320)
T COG4607 110 DYEAIAAAKPDLIII-GGRA 128 (320)
T ss_pred CHHHHHhcCCCEEEE-CcHH
Confidence 566677778999999 4443
No 367
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=36.67 E-value=2e+02 Score=22.36 Aligned_cols=37 Identities=14% Similarity=0.219 Sum_probs=21.2
Q ss_pred HHHHHHHhhhhhcCCceEEEEeCCcccHH-------HHhccCCCEEEECCC
Q 037843 28 LCQYMGELELELSQGYHFEVYRNDELTVA-------ELKRKKPRGVVISPG 71 (203)
Q Consensus 28 l~~~l~~~~~~~~~g~~~~v~~~~~~~~~-------~l~~~~~dgiil~GG 71 (203)
+.+.+++. |+.+.+...+ .+.+ .+...++||||+.+.
T Consensus 21 i~~~~~~~------g~~~~~~~~~-~~~~~~~~~~~~l~~~~vdgiii~~~ 64 (268)
T cd06273 21 FQETLAAH------GYTLLVASSG-YDLDREYAQARKLLERGVDGLALIGL 64 (268)
T ss_pred HHHHHHHC------CCEEEEecCC-CCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 44455555 8888775432 2221 223336899999754
No 368
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=36.67 E-value=1.6e+02 Score=26.09 Aligned_cols=91 Identities=16% Similarity=0.188 Sum_probs=52.2
Q ss_pred CCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHh-
Q 037843 11 DKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLEL- 88 (203)
Q Consensus 11 ~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~- 88 (203)
...+|+|+|-.......+.+.|... |..+........-...+....||-|++.=. .|...+ .+...++..
T Consensus 131 ~~~kILvvdD~~~~~~~l~~~L~~~------g~~v~~a~~~~~Al~~~~e~~~dlil~d~~--mp~~dg~el~~~lr~~~ 202 (435)
T COG3706 131 APKKILVVDDDATQRERLRRILQVE------GFRVVEATDGEEALLQLAELPPDLVLLDAN--MPDMDGLELCTRLRQLE 202 (435)
T ss_pred cCceEEEEcCcHHHHHHHHHHHHhc------cceeeeecCHHHHHHHHhcCCCcEEEEecC--CCccCHHHHHHHHhccc
Confidence 4578999987766677788888887 877765432111122333347899998322 222222 233444443
Q ss_pred -CCCCcee------ehhHHHHHHHhCCe
Q 037843 89 -GPTMPLF------CMGLKCIGEALEGR 109 (203)
Q Consensus 89 -~~~~Pil------ClG~Qlla~a~gg~ 109 (203)
.+.+|++ =.-.+.-|-..|++
T Consensus 203 ~t~~ipii~~~~~~d~~~~~~Af~~G~~ 230 (435)
T COG3706 203 RTRDIPIILLSSKDDDELVVRAFELGVN 230 (435)
T ss_pred ccccccEEEEecccchHHHHHHHHcCCc
Confidence 3578887 33444445555654
No 369
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=36.34 E-value=1.2e+02 Score=23.77 Aligned_cols=30 Identities=20% Similarity=0.383 Sum_probs=17.9
Q ss_pred CceEEEEeCCcccH------HHHhccCCCEEEECCC
Q 037843 42 GYHFEVYRNDELTV------AELKRKKPRGVVISPG 71 (203)
Q Consensus 42 g~~~~v~~~~~~~~------~~l~~~~~dgiil~GG 71 (203)
|+.+.+...+..+. +.+...++||||+.+.
T Consensus 29 g~~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~ 64 (263)
T cd06280 29 GLRVILCNTDEDPEKEAMYLELMEEERVTGVIFAPT 64 (263)
T ss_pred CCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 88887765432111 1223347899999764
No 370
>COG0252 AnsB L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D [Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=36.34 E-value=1.2e+02 Score=26.00 Aligned_cols=34 Identities=9% Similarity=0.180 Sum_probs=22.3
Q ss_pred cCCCEEEECCCCCCCCCcchHHHHHHH-hCCCCcee
Q 037843 61 KKPRGVVISPGPGAPQESGISFRTVLE-LGPTMPLF 95 (203)
Q Consensus 61 ~~~dgiil~GG~~~~~~~~~~~~~i~~-~~~~~Pil 95 (203)
..++||||-|-. .=+....+.+.+++ ..+++||.
T Consensus 253 ~g~~GiVie~~G-~G~~~~~~~~~i~~~~~~gi~VV 287 (351)
T COG0252 253 SGAKGLVLEGTG-SGNVTPALIESIERASKRGIPVV 287 (351)
T ss_pred cCCCEEEEEEEC-CCCCChHHHHHHHHHHHCCCeEE
Confidence 478999985532 22344445666776 46789998
No 371
>PF11051 Mannosyl_trans3: Mannosyltransferase putative; InterPro: IPR022751 Alpha-mannosyltransferase is responsible for the addition of residues to the outer chain of core N-linked polysaccharides and to O-linked mannotriose. It is implicated in late Golgi modifications [][][]. The proteins matching this entry are conserved in fungi and also found in some phototrophic organisms.; GO: 0006486 protein glycosylation
Probab=36.23 E-value=21 Score=29.21 Aligned_cols=32 Identities=31% Similarity=0.395 Sum_probs=21.7
Q ss_pred CEEEECCCCCCCCCcchHHHHHHHhCCCCcee
Q 037843 64 RGVVISPGPGAPQESGISFRTVLELGPTMPLF 95 (203)
Q Consensus 64 dgiil~GG~~~~~~~~~~~~~i~~~~~~~Pil 95 (203)
.|||+++|.......-..++.+|+++.+.||=
T Consensus 2 rGIVi~~g~~~~~~a~~lI~~LR~~g~~LPIE 33 (271)
T PF11051_consen 2 RGIVITAGDKYLWLALRLIRVLRRLGNTLPIE 33 (271)
T ss_pred CEEEEEecCccHHHHHHHHHHHHHhCCCCCEE
Confidence 58999988633222224567778888889985
No 372
>PRK11041 DNA-binding transcriptional regulator CytR; Provisional
Probab=36.08 E-value=1.3e+02 Score=24.17 Aligned_cols=54 Identities=20% Similarity=0.215 Sum_probs=28.3
Q ss_pred CCcEEEE--eCCchHHHH----HHHHHHHhhhhhcCCceEEEEeCCccc--H----HHHhccCCCEEEECCC
Q 037843 12 KNPIVVI--DNYDSFTYN----LCQYMGELELELSQGYHFEVYRNDELT--V----AELKRKKPRGVVISPG 71 (203)
Q Consensus 12 ~~~i~ii--d~~~~~~~~----l~~~l~~~~~~~~~g~~~~v~~~~~~~--~----~~l~~~~~dgiil~GG 71 (203)
...|.+| +..+.|-.. +.+++++. |+.+.+...+... . +.+...++||||+.+.
T Consensus 35 ~~~ig~v~~~~~~~~~~~~~~gi~~~~~~~------g~~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~ 100 (309)
T PRK11041 35 SRTILVIVPDICDPFFSEIIRGIEVTAAEH------GYLVLIGDCAHQNQQEKTFVNLIITKQIDGMLLLGS 100 (309)
T ss_pred CcEEEEEeCCCcCccHHHHHHHHHHHHHHC------CCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEecC
Confidence 3566555 233334333 33444444 8888766543211 1 1223347999999764
No 373
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=35.99 E-value=75 Score=26.05 Aligned_cols=58 Identities=16% Similarity=0.094 Sum_probs=31.6
Q ss_pred CcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEe---CCcccHHHHh----ccCCCEEEECCCCCCCC
Q 037843 13 NPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYR---NDELTVAELK----RKKPRGVVISPGPGAPQ 76 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~---~~~~~~~~l~----~~~~dgiil~GG~~~~~ 76 (203)
+||+|+-..+..-+.+.++++.. |.++..+. .|-.+.+++. ..++|.||-+.+..++.
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~------~~~v~~~~r~~~dl~d~~~~~~~~~~~~pd~Vin~aa~~~~~ 65 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKER------GYEVIATSRSDLDLTDPEAVAKLLEAFKPDVVINCAAYTNVD 65 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTT------SEEEEEESTTCS-TTSHHHHHHHHHHH--SEEEE------HH
T ss_pred CEEEEECCCCHHHHHHHHHHhhC------CCEEEEeCchhcCCCCHHHHHHHHHHhCCCeEeccceeecHH
Confidence 57888877655567788888877 87776552 2222333332 23799999998876544
No 374
>PRK13337 putative lipid kinase; Reviewed
Probab=35.78 E-value=1.5e+02 Score=24.52 Aligned_cols=42 Identities=17% Similarity=0.144 Sum_probs=24.1
Q ss_pred HHHHHHHhhhhhcCCceEEEEeCC-cccHHH----HhccCCCEEEECCCCCCC
Q 037843 28 LCQYMGELELELSQGYHFEVYRND-ELTVAE----LKRKKPRGVVISPGPGAP 75 (203)
Q Consensus 28 l~~~l~~~~~~~~~g~~~~v~~~~-~~~~~~----l~~~~~dgiil~GG~~~~ 75 (203)
+.+.+++. |.++.++... ..+..+ .....+|.||+.||.|..
T Consensus 24 ~~~~l~~~------~~~~~~~~t~~~~~a~~~a~~~~~~~~d~vvv~GGDGTl 70 (304)
T PRK13337 24 VLQKLEQA------GYETSAHATTGPGDATLAAERAVERKFDLVIAAGGDGTL 70 (304)
T ss_pred HHHHHHHc------CCEEEEEEecCCCCHHHHHHHHHhcCCCEEEEEcCCCHH
Confidence 34455555 7777665432 122222 222357999999999863
No 375
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=35.53 E-value=1.9e+02 Score=21.73 Aligned_cols=96 Identities=15% Similarity=0.127 Sum_probs=47.1
Q ss_pred CCCCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeC--C-cccH----HHHhccCCCEEEECCCCCCCCCcchH
Q 037843 9 KNDKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRN--D-ELTV----AELKRKKPRGVVISPGPGAPQESGIS 81 (203)
Q Consensus 9 ~~~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~--~-~~~~----~~l~~~~~dgiil~GG~~~~~~~~~~ 81 (203)
+....+|.++-........+.+.|++. ..|+.+.-... . .... +.+...++|.|++. -|.|..+-.+
T Consensus 45 ~~~~~~ifllG~~~~~~~~~~~~l~~~----yP~l~ivg~~~g~f~~~~~~~i~~~I~~~~pdiv~vg--lG~PkQE~~~ 118 (172)
T PF03808_consen 45 EQRGKRIFLLGGSEEVLEKAAANLRRR----YPGLRIVGYHHGYFDEEEEEAIINRINASGPDIVFVG--LGAPKQERWI 118 (172)
T ss_pred HHcCCeEEEEeCCHHHHHHHHHHHHHH----CCCeEEEEecCCCCChhhHHHHHHHHHHcCCCEEEEE--CCCCHHHHHH
Confidence 344567888866555555555566555 22555543221 1 1111 23344578888873 3344444333
Q ss_pred HHHHHHhCCCCcee-ehhHHHHHHHhCCeecccc
Q 037843 82 FRTVLELGPTMPLF-CMGLKCIGEALEGRLYVLL 114 (203)
Q Consensus 82 ~~~i~~~~~~~Pil-ClG~Qlla~a~gg~v~~~~ 114 (203)
.+....+. .+++ |.|.-+=. +.|++.+.+
T Consensus 119 ~~~~~~l~--~~v~i~vG~~~d~--~aG~~~raP 148 (172)
T PF03808_consen 119 ARHRQRLP--AGVIIGVGGAFDF--LAGKVKRAP 148 (172)
T ss_pred HHHHHHCC--CCEEEEECchhhh--hccCcCccC
Confidence 33333333 4466 66654322 235565554
No 376
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=35.47 E-value=1.7e+02 Score=23.41 Aligned_cols=10 Identities=30% Similarity=0.590 Sum_probs=8.1
Q ss_pred cCCCEEEECC
Q 037843 61 KKPRGVVISP 70 (203)
Q Consensus 61 ~~~dgiil~G 70 (203)
.++||||+.+
T Consensus 55 ~~~dgiii~~ 64 (294)
T cd06316 55 QKPDIIISIP 64 (294)
T ss_pred hCCCEEEEcC
Confidence 4799999964
No 377
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=35.44 E-value=98 Score=27.74 Aligned_cols=43 Identities=12% Similarity=0.179 Sum_probs=25.5
Q ss_pred HHHHHHHhhhhhcCCceEEEEeCCcc-cHH----HHhccCCCEEEECCCCCCCC
Q 037843 28 LCQYMGELELELSQGYHFEVYRNDEL-TVA----ELKRKKPRGVVISPGPGAPQ 76 (203)
Q Consensus 28 l~~~l~~~~~~~~~g~~~~v~~~~~~-~~~----~l~~~~~dgiil~GG~~~~~ 76 (203)
+...|+.. |+.++++..... ... ++...++|+||+.||.|..+
T Consensus 135 v~~~L~~~------gi~~~v~~T~~~ghA~~la~~~~~~~~D~VV~vGGDGTln 182 (481)
T PLN02958 135 VKPLLEDA------DIQLTIQETKYQLHAKEVVRTMDLSKYDGIVCVSGDGILV 182 (481)
T ss_pred HHHHHHHc------CCeEEEEeccCccHHHHHHHHhhhcCCCEEEEEcCCCHHH
Confidence 33456666 888776643211 121 22223689999999988643
No 378
>PRK08462 biotin carboxylase; Validated
Probab=35.34 E-value=1.4e+02 Score=26.18 Aligned_cols=33 Identities=9% Similarity=0.127 Sum_probs=24.8
Q ss_pred CCCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEe
Q 037843 10 NDKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYR 49 (203)
Q Consensus 10 ~~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~ 49 (203)
+.++||||++.+.. .-.+.++++++ |+++..+.
T Consensus 2 ~~~k~ili~~~g~~-~~~~~~~~~~~------G~~~v~~~ 34 (445)
T PRK08462 2 KEIKRILIANRGEI-ALRAIRTIQEM------GKEAIAIY 34 (445)
T ss_pred CCCCEEEEECCcHH-HHHHHHHHHHc------CCCEEEEe
Confidence 34789999998642 44578888998 99887763
No 379
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=35.21 E-value=2.3e+02 Score=22.62 Aligned_cols=29 Identities=24% Similarity=0.211 Sum_probs=18.3
Q ss_pred CceEEEEeCCcccHH-------HHhccCCCEEEECCC
Q 037843 42 GYHFEVYRNDELTVA-------ELKRKKPRGVVISPG 71 (203)
Q Consensus 42 g~~~~v~~~~~~~~~-------~l~~~~~dgiil~GG 71 (203)
|+.+.+..... +.+ .+...++||||+.+.
T Consensus 29 g~~~~~~~~~~-~~~~~~~~i~~~~~~~vdgiii~~~ 64 (288)
T cd01538 29 GAEVIVQNANG-DPAKQISQIENMIAKGVDVLVIAPV 64 (288)
T ss_pred CCEEEEECCCC-CHHHHHHHHHHHHHcCCCEEEEecC
Confidence 89988876532 221 223347999999763
No 380
>cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=35.18 E-value=1.8e+02 Score=23.14 Aligned_cols=38 Identities=13% Similarity=0.090 Sum_probs=24.1
Q ss_pred HHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCC
Q 037843 27 NLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPG 71 (203)
Q Consensus 27 ~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG 71 (203)
.+.+.+++. |+.+.+...++ ..+.+...++||+|+.+.
T Consensus 28 ~i~~~~~~~------gy~~~~~~~~~-~~~~l~~~~vdgiIi~~~ 65 (269)
T cd06287 28 AAAESALER------GLALCLVPPHE-ADSPLDALDIDGAILVEP 65 (269)
T ss_pred HHHHHHHHC------CCEEEEEeCCC-chhhhhccCcCeEEEecC
Confidence 345555665 99988776542 223444558999999653
No 381
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=35.17 E-value=2.5e+02 Score=23.01 Aligned_cols=56 Identities=11% Similarity=0.184 Sum_probs=27.6
Q ss_pred CcEEEEeC--CchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccH-------HHHhccCCCEEEECCC
Q 037843 13 NPIVVIDN--YDSFTYNLCQYMGELELELSQGYHFEVYRNDELTV-------AELKRKKPRGVVISPG 71 (203)
Q Consensus 13 ~~i~iid~--~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~-------~~l~~~~~dgiil~GG 71 (203)
..|.+|-. .+.|-..+.+.+++... ..|+.+.+.... .+. +.+...++||||+.++
T Consensus 60 ~~i~vi~~~~~~~~~~~~~~gi~~~~~--~~g~~~~~~~~~-~~~~~~~~~i~~l~~~~vdgiii~~~ 124 (341)
T PRK10703 60 KSIGLLATSSEAPYFAEIIEAVEKNCY--QKGYTLILCNAW-NNLEKQRAYLSMLAQKRVDGLLVMCS 124 (341)
T ss_pred CeEEEEeCCCCCchHHHHHHHHHHHHH--HCCCEEEEEeCC-CCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 45666632 22343334333333211 118888776532 111 1222347899999775
No 382
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=34.90 E-value=2.7e+02 Score=23.21 Aligned_cols=71 Identities=15% Similarity=0.152 Sum_probs=37.7
Q ss_pred CCcEEEEeCCch-H----HHHHHHHHHHhhhhhcCCceEEEEeCCcc----------cHHHHhccCCCEEEECCCCCCCC
Q 037843 12 KNPIVVIDNYDS-F----TYNLCQYMGELELELSQGYHFEVYRNDEL----------TVAELKRKKPRGVVISPGPGAPQ 76 (203)
Q Consensus 12 ~~~i~iid~~~~-~----~~~l~~~l~~~~~~~~~g~~~~v~~~~~~----------~~~~l~~~~~dgiil~GG~~~~~ 76 (203)
+.+|+|+-+... . ...+.+++++. |+.+.+...... ...++. ..+|.||..||.|.
T Consensus 4 ~~~v~iv~~~~k~~a~e~~~~i~~~L~~~------giev~v~~~~~~~~~~~~~~~~~~~~~~-~~~d~vi~~GGDGt-- 74 (295)
T PRK01231 4 FRNIGLIGRLGSSSVVETLRRLKDFLLDR------GLEVILDEETAEVLPGHGLQTVSRKLLG-EVCDLVIVVGGDGS-- 74 (295)
T ss_pred CCEEEEEecCCCHHHHHHHHHHHHHHHHC------CCEEEEecchhhhcCcccccccchhhcc-cCCCEEEEEeCcHH--
Confidence 456888755332 2 22344455555 888766432100 011122 24788999899664
Q ss_pred CcchHHHHHHHh-CCCCcee
Q 037843 77 ESGISFRTVLEL-GPTMPLF 95 (203)
Q Consensus 77 ~~~~~~~~i~~~-~~~~Pil 95 (203)
+....+.+ ..++|||
T Consensus 75 ----~l~~~~~~~~~~~Pvl 90 (295)
T PRK01231 75 ----LLGAARALARHNVPVL 90 (295)
T ss_pred ----HHHHHHHhcCCCCCEE
Confidence 23444443 4578888
No 383
>PRK07116 flavodoxin; Provisional
Probab=34.88 E-value=1.9e+02 Score=21.38 Aligned_cols=24 Identities=17% Similarity=0.169 Sum_probs=15.5
Q ss_pred CCcEEEE-eCCchHHHHHHHHHHHh
Q 037843 12 KNPIVVI-DNYDSFTYNLCQYMGEL 35 (203)
Q Consensus 12 ~~~i~ii-d~~~~~~~~l~~~l~~~ 35 (203)
|++++|| -...+.+..+++.+++.
T Consensus 2 m~k~lIvY~S~tGnT~~iA~~Ia~~ 26 (160)
T PRK07116 2 NNKTLVAYFSATGTTKKVAEKLAEV 26 (160)
T ss_pred CCcEEEEEECCCCcHHHHHHHHHHH
Confidence 3456665 44456788888877664
No 384
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=34.80 E-value=1.5e+02 Score=20.43 Aligned_cols=61 Identities=15% Similarity=0.091 Sum_probs=32.1
Q ss_pred HHHHHHhhhhhcCCceEEEEeCC-c---cc-HHHHhc-cCCCEEEECCCCCCCCCcchHHHHHHH--hCCCCcee
Q 037843 29 CQYMGELELELSQGYHFEVYRND-E---LT-VAELKR-KKPRGVVISPGPGAPQESGISFRTVLE--LGPTMPLF 95 (203)
Q Consensus 29 ~~~l~~~~~~~~~g~~~~v~~~~-~---~~-~~~l~~-~~~dgiil~GG~~~~~~~~~~~~~i~~--~~~~~Pil 95 (203)
.++|++. |+++..+..- + .. .+.+.. .++|.||-++.+.........-..|++ ...++|++
T Consensus 35 a~~L~~~------Gi~~~~v~~~~~~g~~~i~~~i~~~g~idlVIn~~~~~~~~~~~~dg~~iRR~A~~~~Ip~~ 103 (112)
T cd00532 35 SRVLADA------GIPVRAVSKRHEDGEPTVDAAIAEKGKFDVVINLRDPRRDRCTDEDGTALLRLARLYKIPVT 103 (112)
T ss_pred HHHHHHc------CCceEEEEecCCCCCcHHHHHHhCCCCEEEEEEcCCCCcccccCCChHHHHHHHHHcCCCEE
Confidence 4455565 8887765321 1 11 234555 578999987753331111111123333 35789998
No 385
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=34.74 E-value=2.4e+02 Score=22.71 Aligned_cols=28 Identities=14% Similarity=0.184 Sum_probs=16.3
Q ss_pred CceEEEE-eCCcccHH-------HHhccCCCEEEECC
Q 037843 42 GYHFEVY-RNDELTVA-------ELKRKKPRGVVISP 70 (203)
Q Consensus 42 g~~~~v~-~~~~~~~~-------~l~~~~~dgiil~G 70 (203)
|+.+.++ +.+ .+.+ .+...++||||+.+
T Consensus 29 g~~v~~~~~~~-~d~~~~~~~i~~~~~~~~DgiIi~~ 64 (298)
T cd06302 29 GVDAIYVGPTT-ADAAGQVQIIEDLIAQGVDAIAVVP 64 (298)
T ss_pred CCeEEEECCCC-CCHHHHHHHHHHHHhcCCCEEEEec
Confidence 8888765 332 1221 12234799999964
No 386
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=34.35 E-value=1.6e+02 Score=23.49 Aligned_cols=37 Identities=14% Similarity=0.270 Sum_probs=21.1
Q ss_pred HHHHHHHhhhhhcCCceEEEEeCCcccH-------HHHhccCCCEEEECCC
Q 037843 28 LCQYMGELELELSQGYHFEVYRNDELTV-------AELKRKKPRGVVISPG 71 (203)
Q Consensus 28 l~~~l~~~~~~~~~g~~~~v~~~~~~~~-------~~l~~~~~dgiil~GG 71 (203)
+.+.+++. |+.+.+.... .+. +.+...++||||+.+.
T Consensus 22 i~~~a~~~------gy~~~~~~~~-~~~~~~~~~i~~l~~~~vdgiil~~~ 65 (280)
T cd06315 22 VREAAKAI------GWNLRILDGR-GSEAGQAAALNQAIALKPDGIVLGGV 65 (280)
T ss_pred HHHHHHHc------CcEEEEECCC-CCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 34455555 8887665432 121 1222348999999763
No 387
>TIGR02955 TMAO_TorT TMAO reductase system periplasmic protein TorT. Members of this family are the periplasmic protein TorT which, together with the the TorS/TorR histidine kinase/response regulator system, regulates expression of the torCAD operon for trimethylamine N-oxide reductase (TMAO reductase). It appears to bind an inducer for TMAO reductase, and shows homology to a periplasmic D-ribose binding protein.
Probab=34.03 E-value=2.5e+02 Score=22.62 Aligned_cols=29 Identities=10% Similarity=0.219 Sum_probs=17.2
Q ss_pred CceEEEEeCCc-ccHH-H------HhccCCCEEEECC
Q 037843 42 GYHFEVYRNDE-LTVA-E------LKRKKPRGVVISP 70 (203)
Q Consensus 42 g~~~~v~~~~~-~~~~-~------l~~~~~dgiil~G 70 (203)
|+.+.+...+. .+.+ + +...++||||+.+
T Consensus 29 g~~v~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~ 65 (295)
T TIGR02955 29 GVELKVLEAGGYPNLDKQLAQIEQCKSWGADAILLGT 65 (295)
T ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 88888765421 1211 1 2234799999975
No 388
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=33.70 E-value=2.3e+02 Score=22.04 Aligned_cols=30 Identities=20% Similarity=0.324 Sum_probs=17.8
Q ss_pred CceEEEEeCCcccH------HHHhccCCCEEEECCC
Q 037843 42 GYHFEVYRNDELTV------AELKRKKPRGVVISPG 71 (203)
Q Consensus 42 g~~~~v~~~~~~~~------~~l~~~~~dgiil~GG 71 (203)
|..+.+........ +.+...++||||+.+.
T Consensus 29 g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 64 (268)
T cd06298 29 KYNIILSNSDNDKEKELKVLNNLLAKQVDGIIFMGG 64 (268)
T ss_pred CCeEEEEeCCCCHHHHHHHHHHHHHhcCCEEEEeCC
Confidence 88887765431111 1233347999999764
No 389
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=33.60 E-value=1.8e+02 Score=28.99 Aligned_cols=79 Identities=15% Similarity=0.237 Sum_probs=45.7
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELGP 90 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~~ 90 (203)
+.+|+|||-.......+.+.|+.. |..+..........+.+....+|.|++-- ..|...+ .....+++...
T Consensus 958 ~~~iLivdd~~~~~~~l~~~L~~~------g~~v~~~~~~~~al~~~~~~~~dlil~D~--~mp~~~g~~~~~~i~~~~~ 1029 (1197)
T PRK09959 958 KLSILIADDHPTNRLLLKRQLNLL------GYDVDEATDGVQALHKVSMQHYDLLITDV--NMPNMDGFELTRKLREQNS 1029 (1197)
T ss_pred CceEEEcCCCHHHHHHHHHHHHHc------CCEEEEECCHHHHHHHhhcCCCCEEEEeC--CCCCCCHHHHHHHHHhcCC
Confidence 467999998777777788888888 88875442211112223334688877721 1222222 23445555455
Q ss_pred CCcee-ehh
Q 037843 91 TMPLF-CMG 98 (203)
Q Consensus 91 ~~Pil-ClG 98 (203)
..|++ +-+
T Consensus 1030 ~~pii~lt~ 1038 (1197)
T PRK09959 1030 SLPIWGLTA 1038 (1197)
T ss_pred CCCEEEEEC
Confidence 68888 533
No 390
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=33.59 E-value=2.3e+02 Score=22.15 Aligned_cols=11 Identities=18% Similarity=0.546 Sum_probs=8.8
Q ss_pred cCCCEEEECCC
Q 037843 61 KKPRGVVISPG 71 (203)
Q Consensus 61 ~~~dgiil~GG 71 (203)
.++||||+.+.
T Consensus 59 ~~vdgiIi~~~ 69 (272)
T cd06300 59 QGVDAIIINPA 69 (272)
T ss_pred cCCCEEEEeCC
Confidence 48999999664
No 391
>PRK00861 putative lipid kinase; Reviewed
Probab=33.43 E-value=1.1e+02 Score=25.21 Aligned_cols=14 Identities=21% Similarity=0.406 Sum_probs=11.6
Q ss_pred cCCCEEEECCCCCC
Q 037843 61 KKPRGVVISPGPGA 74 (203)
Q Consensus 61 ~~~dgiil~GG~~~ 74 (203)
..+|.||+.||.|.
T Consensus 56 ~~~d~vv~~GGDGT 69 (300)
T PRK00861 56 RGAELIIASGGDGT 69 (300)
T ss_pred cCCCEEEEECChHH
Confidence 36799999999885
No 392
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=33.36 E-value=2.4e+02 Score=22.22 Aligned_cols=30 Identities=3% Similarity=0.123 Sum_probs=17.5
Q ss_pred CceEEEEeCCc-ccH-------HHHhccCCCEEEECCC
Q 037843 42 GYHFEVYRNDE-LTV-------AELKRKKPRGVVISPG 71 (203)
Q Consensus 42 g~~~~v~~~~~-~~~-------~~l~~~~~dgiil~GG 71 (203)
|+.+.+..... .+. +.+...++||||+.+.
T Consensus 29 g~~~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiI~~~~ 66 (268)
T cd06306 29 GVSLKLLEAGGYPNLAKQIAQLEDCAAWGADAILLGAV 66 (268)
T ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 88887764321 111 1222348999999753
No 393
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=33.19 E-value=1.8e+02 Score=25.59 Aligned_cols=33 Identities=12% Similarity=0.146 Sum_probs=25.5
Q ss_pred CCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeC
Q 037843 11 DKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRN 50 (203)
Q Consensus 11 ~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~ 50 (203)
|++||+|+..+ .....+.+.++++ |+++.++..
T Consensus 1 ~~kkili~g~g-~~~~~~~~aa~~l------G~~vv~~~~ 33 (449)
T TIGR00514 1 MLDKILIANRG-EIALRILRACKEL------GIKTVAVHS 33 (449)
T ss_pred CcceEEEeCCC-HHHHHHHHHHHHc------CCeEEEEEC
Confidence 36789999654 4567788999999 999887743
No 394
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=32.77 E-value=2e+02 Score=22.60 Aligned_cols=58 Identities=16% Similarity=0.058 Sum_probs=33.7
Q ss_pred CCceEEEEeCCcc------cHHHHhccCCCEEEECCCCCCCCCc-chHHHHHHHhCCCCcee-ehh
Q 037843 41 QGYHFEVYRNDEL------TVAELKRKKPRGVVISPGPGAPQES-GISFRTVLELGPTMPLF-CMG 98 (203)
Q Consensus 41 ~g~~~~v~~~~~~------~~~~l~~~~~dgiil~GG~~~~~~~-~~~~~~i~~~~~~~Pil-ClG 98 (203)
+|.+++..+..+. ..+++....++.|+=|||+.+..+. +.+.+++.....++-|+ +-|
T Consensus 113 ~~~~~tFHRAfD~~~d~~~al~~L~~lG~~rVLTSGg~~~a~~g~~~L~~lv~~a~~~i~Im~GgG 178 (201)
T PF03932_consen 113 GGMPVTFHRAFDEVPDPEEALEQLIELGFDRVLTSGGAPTALEGIENLKELVEQAKGRIEIMPGGG 178 (201)
T ss_dssp TTSEEEE-GGGGGSSTHHHHHHHHHHHT-SEEEESTTSSSTTTCHHHHHHHHHHHTTSSEEEEESS
T ss_pred CCCeEEEeCcHHHhCCHHHHHHHHHhcCCCEEECCCCCCCHHHHHHHHHHHHHHcCCCcEEEecCC
Confidence 3888877653221 2344545689999999998665543 33445555555566677 544
No 395
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=32.69 E-value=2.7e+02 Score=22.64 Aligned_cols=57 Identities=18% Similarity=0.232 Sum_probs=27.7
Q ss_pred CcEEEEeC--CchHHHHHHHHHHHhhhhhcCCceEEEEeCCcc-cH-----HHHhccCCCEEEECCC
Q 037843 13 NPIVVIDN--YDSFTYNLCQYMGELELELSQGYHFEVYRNDEL-TV-----AELKRKKPRGVVISPG 71 (203)
Q Consensus 13 ~~i~iid~--~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~-~~-----~~l~~~~~dgiil~GG 71 (203)
..|.++-. .+.|...+.+.+++... ..|+.+.+...+.. .. ..+...++||||+.+.
T Consensus 60 ~~Igvv~~~~~~~f~~~l~~~i~~~~~--~~g~~~~i~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~ 124 (329)
T TIGR01481 60 TTVGVIIPDISNIYYAELARGIEDIAT--MYKYNIILSNSDEDPEKEVQVLNTLLSKQVDGIIFMGG 124 (329)
T ss_pred CEEEEEeCCCCchhHHHHHHHHHHHHH--HcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 45666532 23343334443333211 11888877654311 11 1223347999999753
No 396
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=32.58 E-value=1.1e+02 Score=24.70 Aligned_cols=75 Identities=16% Similarity=0.206 Sum_probs=36.6
Q ss_pred cCCCCCcEEEEeCCchH------------HHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCC
Q 037843 8 SKNDKNPIVVIDNYDSF------------TYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAP 75 (203)
Q Consensus 8 ~~~~~~~i~iid~~~~~------------~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~ 75 (203)
..+..++|.++.-+... .+.+.+.|+. ...+..+. ...+++. .++|.+||. ||..+
T Consensus 142 ~~~~~~~V~~l~ghge~~~~~~~~~~~~~~~~l~~~L~~-------~y~V~~~~---l~~~~IP-~~~d~Lvi~-~P~~~ 209 (271)
T PF09822_consen 142 TSDEKPKVYFLTGHGERGGGSMPNSQSTSYSSLKSLLEK-------NYDVEELN---LANEEIP-DDADVLVIA-GPKTD 209 (271)
T ss_pred hcccCceEEEEccccccccccccccCcchHHHHHHHHHh-------cCceeecC---CcccccC-CCCCEEEEE-CCCCC
Confidence 34456888888654433 1224444433 34444433 2244553 378999994 44443
Q ss_pred CCcchHHHHHHH-hCCCCcee
Q 037843 76 QESGISFRTVLE-LGPTMPLF 95 (203)
Q Consensus 76 ~~~~~~~~~i~~-~~~~~Pil 95 (203)
..... ...|.+ +.++-++|
T Consensus 210 ls~~e-~~~l~~yl~~GG~ll 229 (271)
T PF09822_consen 210 LSEEE-LYALDQYLMNGGKLL 229 (271)
T ss_pred CCHHH-HHHHHHHHHcCCeEE
Confidence 33333 233444 33334444
No 397
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=32.42 E-value=1.9e+02 Score=23.56 Aligned_cols=30 Identities=17% Similarity=0.304 Sum_probs=17.6
Q ss_pred CceEEEEeCCcccH------HHHhccCCCEEEECCC
Q 037843 42 GYHFEVYRNDELTV------AELKRKKPRGVVISPG 71 (203)
Q Consensus 42 g~~~~v~~~~~~~~------~~l~~~~~dgiil~GG 71 (203)
|+.+.+...+.... +.+...++||||+.+.
T Consensus 86 g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~ 121 (327)
T PRK10423 86 GYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCT 121 (327)
T ss_pred CCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 88887765431111 1223347999999764
No 398
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=32.19 E-value=2.5e+02 Score=22.08 Aligned_cols=39 Identities=10% Similarity=0.089 Sum_probs=22.9
Q ss_pred HHHHHHHHhhhhhcCCceEEEEeCCcc-cH-HH----HhccCCCEEEECCC
Q 037843 27 NLCQYMGELELELSQGYHFEVYRNDEL-TV-AE----LKRKKPRGVVISPG 71 (203)
Q Consensus 27 ~l~~~l~~~~~~~~~g~~~~v~~~~~~-~~-~~----l~~~~~dgiil~GG 71 (203)
.+.+++++. |+.+.+...+.. .. +. +...++||||+.+.
T Consensus 20 ~i~~~~~~~------gy~~~~~~~~~~~~~~~~~~~~l~~~~vdgvi~~~~ 64 (269)
T cd06297 20 GIEGALLEQ------RYDLALFPLLSLARLKRYLESTTLAYLTDGLLLASY 64 (269)
T ss_pred HHHHHHHHC------CCEEEEEeCCCcHHHHHHHHHHHHhcCCCEEEEecC
Confidence 344555555 899888765321 11 11 22336999999864
No 399
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=32.09 E-value=2.4e+02 Score=21.90 Aligned_cols=29 Identities=17% Similarity=0.302 Sum_probs=17.8
Q ss_pred CceEEEEeCCcccH-------HHHhccCCCEEEECCC
Q 037843 42 GYHFEVYRNDELTV-------AELKRKKPRGVVISPG 71 (203)
Q Consensus 42 g~~~~v~~~~~~~~-------~~l~~~~~dgiil~GG 71 (203)
|+.+.+...+ .+. +.+...++||+|+.+.
T Consensus 29 gy~~~~~~~~-~~~~~~~~~i~~l~~~~~dgiii~~~ 64 (265)
T cd06290 29 GYSPIIATGH-WNQSRELEALELLKSRRVDALILLGG 64 (265)
T ss_pred CCEEEEEeCC-CCHHHHHHHHHHHHHCCCCEEEEeCC
Confidence 8888776543 222 1233347999999764
No 400
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=31.98 E-value=2.4e+02 Score=21.81 Aligned_cols=30 Identities=20% Similarity=0.369 Sum_probs=17.7
Q ss_pred CceEEEEeCCcccH------HHHhccCCCEEEECCC
Q 037843 42 GYHFEVYRNDELTV------AELKRKKPRGVVISPG 71 (203)
Q Consensus 42 g~~~~v~~~~~~~~------~~l~~~~~dgiil~GG 71 (203)
|+.+.+...+.... ..+...++||||+.++
T Consensus 29 g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 64 (266)
T cd06282 29 GYSLLLATTDYDAEREADAVETLLRQRVDGLILTVA 64 (266)
T ss_pred CCEEEEeeCCCCHHHHHHHHHHHHhcCCCEEEEecC
Confidence 88888765431111 1223347999999654
No 401
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional
Probab=31.92 E-value=1.4e+02 Score=24.06 Aligned_cols=79 Identities=10% Similarity=0.180 Sum_probs=45.6
Q ss_pred CcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhc-cCCCEEEECCCCCCCCCc---ch-HHHHHHH
Q 037843 13 NPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKR-KKPRGVVISPGPGAPQES---GI-SFRTVLE 87 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~-~~~dgiil~GG~~~~~~~---~~-~~~~i~~ 87 (203)
-.+++||.++. ...+.++|... -++.++.+.-.-...+.. .+++ +++.||.-.+... +. ..+.++.
T Consensus 92 g~tIflD~GtT-~~~la~~L~~~-------~~ltVvTNsl~ia~~l~~~~~~~-villGG~~~~~~~~~~G~~a~~~l~~ 162 (252)
T PRK10906 92 GATLFIDIGTT-PEAVAHALLNH-------SNLRIVTNNLNVANTLMAKEDFR-IILAGGELRSRDGGIIGEATLDFISQ 162 (252)
T ss_pred CCEEEEcCcHH-HHHHHHHhcCC-------CCcEEEECcHHHHHHHhhCCCCE-EEEECCEEecCCCccCCHHHHHHHHh
Confidence 35788898753 45567777442 235566543112233432 2344 6666887554432 33 3667777
Q ss_pred hCCCCcee-ehhHH
Q 037843 88 LGPTMPLF-CMGLK 100 (203)
Q Consensus 88 ~~~~~Pil-ClG~Q 100 (203)
+.-++-+| |-|.-
T Consensus 163 ~~~d~afi~~~Gi~ 176 (252)
T PRK10906 163 FRLDFGILGISGID 176 (252)
T ss_pred ccCCEEEEcCCEEC
Confidence 76678888 88876
No 402
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=31.68 E-value=99 Score=21.74 Aligned_cols=68 Identities=21% Similarity=0.119 Sum_probs=36.5
Q ss_pred HHHHHHHHhhhhhcCCceEEEEeCC--cccHHHHhc-cCCCEEEECCCCCCCCCcchHHHHHHHhCCCCceeehhHH
Q 037843 27 NLCQYMGELELELSQGYHFEVYRND--ELTVAELKR-KKPRGVVISPGPGAPQESGISFRTVLELGPTMPLFCMGLK 100 (203)
Q Consensus 27 ~l~~~l~~~~~~~~~g~~~~v~~~~--~~~~~~l~~-~~~dgiil~GG~~~~~~~~~~~~~i~~~~~~~PilClG~Q 100 (203)
.+..++++. |..+..+... +...+++.. .++|.|.+|.-..+....-.+.+.+++...+.+|+..|.+
T Consensus 7 ~~aa~l~~~------g~~v~~~~~~~~~~~~~~~~~~~~pdiv~~S~~~~~~~~~~~~~~~ik~~~p~~~iv~GG~~ 77 (127)
T cd02068 7 YLAAVLEDA------GFIVAEHDVLSADDIVEDIKELLKPDVVGISLMTSAIYEALELAKIAKEVLPNVIVVVGGPH 77 (127)
T ss_pred HHHHHHHHC------CCeeeecCCCCHHHHHHHHHHhcCCCEEEEeeccccHHHHHHHHHHHHHHCCCCEEEECCcc
Confidence 455677777 8777665432 123445544 5899999975322211111234555655445666654544
No 403
>TIGR03682 arCOG04112 arCOG04112 universal archaeal diphthamide biosynthesis domain protein. This family of proteins has been observed universally in archaeal genomes and contains a match to the TIGR00322 model for the diphthamide biosynthesis protein 2-related domain.
Probab=31.56 E-value=2e+02 Score=24.08 Aligned_cols=33 Identities=15% Similarity=0.124 Sum_probs=25.7
Q ss_pred CceEEEEeCCcccHHHHhccCCCEEEECCCCCC
Q 037843 42 GYHFEVYRNDELTVAELKRKKPRGVVISPGPGA 74 (203)
Q Consensus 42 g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~ 74 (203)
|....++-.+..+++.+.++++|..|+++=|-.
T Consensus 242 gkk~y~i~~~~in~~kL~nf~iD~fV~~aCPr~ 274 (308)
T TIGR03682 242 GKEALLILLDNISPDQLRNLDFDAYVNTACPRI 274 (308)
T ss_pred CCeEEEEEeCCCCHHHHhcCCcCEEEEccCCCc
Confidence 777766666678899998878999999876643
No 404
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=31.32 E-value=2.1e+02 Score=20.94 Aligned_cols=75 Identities=13% Similarity=0.101 Sum_probs=37.4
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcc-cHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDEL-TVAELKRKKPRGVVISPGPGAPQESGISFRTVLELGP 90 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~-~~~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~~~~ 90 (203)
|.+|+|+|........+.+.++... +..+...-.+.. ....+....+|.||+-=. .+... ....++.+..
T Consensus 1 m~~ilivd~~~~~~~~l~~~L~~~~-----~~~~~~~~~~~~~~l~~~~~~~~dlvi~d~~--~~~~~--g~~~~~~l~~ 71 (196)
T PRK10360 1 MITVALIDDHLIVRSGFAQLLGLEP-----DLQVVAEFGSGREALAGLPGRGVQVCICDIS--MPDIS--GLELLSQLPK 71 (196)
T ss_pred CeEEEEECCcHHHHHHHHHHHccCC-----CcEEEEEECCHHHHHHHHhcCCCCEEEEeCC--CCCCC--HHHHHHHHcc
Confidence 4579999987766677777775430 443322111111 112233336888887211 11111 1334444444
Q ss_pred CCcee
Q 037843 91 TMPLF 95 (203)
Q Consensus 91 ~~Pil 95 (203)
..|++
T Consensus 72 ~~~vi 76 (196)
T PRK10360 72 GMATI 76 (196)
T ss_pred CCCEE
Confidence 67887
No 405
>PLN02979 glycolate oxidase
Probab=31.27 E-value=3.5e+02 Score=23.46 Aligned_cols=85 Identities=12% Similarity=0.081 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhhhhhcCCceEEEEeCCc-ccHHHHhccCCCEEEECCCCCCCCCcch-HH---HHH-HHhCCCCcee---
Q 037843 25 TYNLCQYMGELELELSQGYHFEVYRNDE-LTVAELKRKKPRGVVISPGPGAPQESGI-SF---RTV-LELGPTMPLF--- 95 (203)
Q Consensus 25 ~~~l~~~l~~~~~~~~~g~~~~v~~~~~-~~~~~l~~~~~dgiil~GG~~~~~~~~~-~~---~~i-~~~~~~~Pil--- 95 (203)
++.-.+++++.. +.++.+--.-. .+...+.+..+|+|+++|..|.-.+... .. ..+ ..+..++||+
T Consensus 211 tW~dl~wlr~~~-----~~PvivKgV~~~~dA~~a~~~Gvd~I~VsnhGGrqld~~p~t~~~L~ei~~~~~~~~~Vi~dG 285 (366)
T PLN02979 211 SWKDVQWLQTIT-----KLPILVKGVLTGEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDG 285 (366)
T ss_pred CHHHHHHHHhcc-----CCCEEeecCCCHHHHHHHHhcCCCEEEECCCCcCCCCCchhHHHHHHHHHHHhCCCCeEEEeC
Confidence 444456776652 56665432211 1222333458999999888765434321 12 223 2345679999
Q ss_pred --ehhHHHH-HHHhCCeecccc
Q 037843 96 --CMGLKCI-GEALEGRLYVLL 114 (203)
Q Consensus 96 --ClG~Qll-a~a~gg~v~~~~ 114 (203)
..|..++ +.++|++.....
T Consensus 286 GIr~G~Di~KALALGAdaV~iG 307 (366)
T PLN02979 286 GVRRGTDVFKALALGASGIFIG 307 (366)
T ss_pred CcCcHHHHHHHHHcCCCEEEEc
Confidence 5666665 568898766543
No 406
>PLN02204 diacylglycerol kinase
Probab=31.23 E-value=1.4e+02 Score=27.75 Aligned_cols=43 Identities=14% Similarity=0.114 Sum_probs=25.0
Q ss_pred HHHHHHHhhhhhcCCceEEEEeCCcc-cHHHH----h---ccCCCEEEECCCCCCCC
Q 037843 28 LCQYMGELELELSQGYHFEVYRNDEL-TVAEL----K---RKKPRGVVISPGPGAPQ 76 (203)
Q Consensus 28 l~~~l~~~~~~~~~g~~~~v~~~~~~-~~~~l----~---~~~~dgiil~GG~~~~~ 76 (203)
+...|+.. ++.+.++..... ...++ . ...+|+||..||.|..+
T Consensus 182 V~p~f~~a------~i~~~v~~T~~aghA~d~~~~~~~~~l~~~D~VVaVGGDGt~n 232 (601)
T PLN02204 182 VSPIFIRA------KVKTKVIVTERAGHAFDVMASISNKELKSYDGVIAVGGDGFFN 232 (601)
T ss_pred HHHHHHHc------CCeEEEEEecCcchHHHHHHHHhhhhccCCCEEEEEcCccHHH
Confidence 44556565 788766543211 11111 1 23689999999988643
No 407
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=31.12 E-value=1.2e+02 Score=20.03 Aligned_cols=68 Identities=12% Similarity=-0.102 Sum_probs=34.7
Q ss_pred CcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcchHHHHHHH
Q 037843 13 NPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGISFRTVLE 87 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~ 87 (203)
.++..||..........+..++. +.+++.+..|-....... ..+|.|+.+++.-..........++++
T Consensus 25 ~~~~gvD~s~~~l~~~~~~~~~~------~~~~~~~~~D~~~l~~~~-~~~D~v~~~~~~~~~~~~~~~~~ll~~ 92 (101)
T PF13649_consen 25 SRVIGVDISPEMLELAKKRFSED------GPKVRFVQADARDLPFSD-GKFDLVVCSGLSLHHLSPEELEALLRR 92 (101)
T ss_dssp SEEEEEES-HHHHHHHHHHSHHT------TTTSEEEESCTTCHHHHS-SSEEEEEE-TTGGGGSSHHHHHHHHHH
T ss_pred ceEEEEECCHHHHHHHHHhchhc------CCceEEEECCHhHCcccC-CCeeEEEEcCCccCCCCHHHHHHHHHH
Confidence 67888887544444444444443 556666655433333322 368999997773332333333444443
No 408
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=31.07 E-value=1.9e+02 Score=24.14 Aligned_cols=56 Identities=14% Similarity=0.191 Sum_probs=38.7
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcc-cHHHH----hccCCCEEEECCCCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDEL-TVAEL----KRKKPRGVVISPGPG 73 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~-~~~~l----~~~~~dgiil~GG~~ 73 (203)
.-|||=||-...|...-.+.-+.+ |+++.=+...+. -++.+ ...+||-|||||=.+
T Consensus 105 PGkVLHlDGD~~YL~~Cl~~Ykql------~i~a~G~~~~E~eqp~~i~~Ll~~~~PDIlViTGHD~ 165 (287)
T PF05582_consen 105 PGKVLHLDGDEEYLNKCLKVYKQL------GIPAVGIHVPEKEQPEKIYRLLEEYRPDILVITGHDG 165 (287)
T ss_pred CCeEEEecCCHHHHHHHHHHHHHc------CCceEEEEechHHhhHHHHHHHHHcCCCEEEEeCchh
Confidence 458999998877877777777888 888765543322 22222 234899999998655
No 409
>PRK13059 putative lipid kinase; Reviewed
Probab=31.04 E-value=1.8e+02 Score=23.97 Aligned_cols=42 Identities=19% Similarity=0.214 Sum_probs=23.4
Q ss_pred HHHHHHHhhhhhcCCceEEEEeCCcc-cHHH---HhccCCCEEEECCCCCCC
Q 037843 28 LCQYMGELELELSQGYHFEVYRNDEL-TVAE---LKRKKPRGVVISPGPGAP 75 (203)
Q Consensus 28 l~~~l~~~~~~~~~g~~~~v~~~~~~-~~~~---l~~~~~dgiil~GG~~~~ 75 (203)
+.+++++. |.++.++..... ..+. .....+|.||+.||.|..
T Consensus 24 i~~~l~~~------g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDGTv 69 (295)
T PRK13059 24 VIRIHQEK------GYLVVPYRISLEYDLKNAFKDIDESYKYILIAGGDGTV 69 (295)
T ss_pred HHHHHHHC------CcEEEEEEccCcchHHHHHHHhhcCCCEEEEECCccHH
Confidence 33455555 777665443211 1111 112367999999999863
No 410
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=30.89 E-value=1.2e+02 Score=29.02 Aligned_cols=78 Identities=12% Similarity=0.097 Sum_probs=45.7
Q ss_pred CcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHh---
Q 037843 13 NPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLEL--- 88 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~--- 88 (203)
++|+|+|........+.+.|+.. |+.+.....-....+.+....||.|++-- ..|...+ ...+.+++.
T Consensus 691 ~~iLivdd~~~~~~~l~~~L~~~------g~~v~~a~~~~~al~~~~~~~~dlil~D~--~mp~~~G~~~~~~ir~~~~~ 762 (921)
T PRK15347 691 LQILLVDDVETNRDIIGMMLVEL------GQQVTTAASGTEALELGRQHRFDLVLMDI--RMPGLDGLETTQLWRDDPNN 762 (921)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHc------CCEEEEECCHHHHHHHHhcCCCCEEEEeC--CCCCCCHHHHHHHHHhchhh
Confidence 58999998877778888899888 88876543211112233334688888721 1222222 234445542
Q ss_pred -CCCCcee-ehh
Q 037843 89 -GPTMPLF-CMG 98 (203)
Q Consensus 89 -~~~~Pil-ClG 98 (203)
...+||+ +-+
T Consensus 763 ~~~~~pii~lt~ 774 (921)
T PRK15347 763 LDPDCMIVALTA 774 (921)
T ss_pred cCCCCcEEEEeC
Confidence 2568888 533
No 411
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=30.81 E-value=1.6e+02 Score=25.69 Aligned_cols=51 Identities=14% Similarity=0.232 Sum_probs=37.2
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCC---cccHHHHhc-----cCCCEEEEC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRND---ELTVAELKR-----KKPRGVVIS 69 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~---~~~~~~l~~-----~~~dgiil~ 69 (203)
..+|+++.++ .|...+.+.++.. |.++.++... ..+++++.+ -+++.|.+.
T Consensus 80 gdkVLv~~nG-~FG~R~~~ia~~~------g~~v~~~~~~wg~~v~p~~v~~~L~~~~~~~~V~~v 138 (383)
T COG0075 80 GDKVLVVVNG-KFGERFAEIAERY------GAEVVVLEVEWGEAVDPEEVEEALDKDPDIKAVAVV 138 (383)
T ss_pred CCeEEEEeCC-hHHHHHHHHHHHh------CCceEEEeCCCCCCCCHHHHHHHHhcCCCccEEEEE
Confidence 4589999997 5889999999998 9998887653 245666543 146677773
No 412
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=30.79 E-value=78 Score=26.74 Aligned_cols=23 Identities=13% Similarity=0.242 Sum_probs=16.6
Q ss_pred CcEEEEeCCchHHHHHHHHHHHh
Q 037843 13 NPIVVIDNYDSFTYNLCQYMGEL 35 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~~~l~~~ 35 (203)
++|+|+|.......++...|.+.
T Consensus 1 ~~~iiVDdd~a~~~~l~~iLs~~ 23 (361)
T COG3947 1 PRIIIVDDDAAIVKLLSVILSRA 23 (361)
T ss_pred CcEEEEcchHHHHHHHHHHHHhc
Confidence 57899998766566666666666
No 413
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=30.74 E-value=1.9e+02 Score=22.32 Aligned_cols=27 Identities=26% Similarity=0.165 Sum_probs=15.1
Q ss_pred chHHHHHHHHHHHhhhhhcCCceEEEEeC
Q 037843 22 DSFTYNLCQYMGELELELSQGYHFEVYRN 50 (203)
Q Consensus 22 ~~~~~~l~~~l~~~~~~~~~g~~~~v~~~ 50 (203)
.+.+..+.+++.+-.++. |++++++..
T Consensus 13 ~G~t~~l~~~~~~g~~~~--G~E~~~i~v 39 (207)
T COG0655 13 NGNTAKLAEAVLEGAEEA--GAEVEIIRL 39 (207)
T ss_pred CCcHHHHHHHHHHHHHHc--CCEEEEEEe
Confidence 456666665554432222 888887654
No 414
>PLN02404 6,7-dimethyl-8-ribityllumazine synthase
Probab=30.61 E-value=2.2e+02 Score=21.01 Aligned_cols=86 Identities=17% Similarity=0.152 Sum_probs=41.3
Q ss_pred ccCCCCCcEEEEe--CCchHHHHHHH-HHHHhhhhhcCCce---EEEEeC---CcccH--HHHh-ccCCCEEEECCCC--
Q 037843 7 LSKNDKNPIVVID--NYDSFTYNLCQ-YMGELELELSQGYH---FEVYRN---DELTV--AELK-RKKPRGVVISPGP-- 72 (203)
Q Consensus 7 ~~~~~~~~i~iid--~~~~~~~~l~~-~l~~~~~~~~~g~~---~~v~~~---~~~~~--~~l~-~~~~dgiil~GG~-- 72 (203)
+++....||+||- ++...+..+.+ +++.+. ..|+. +.+++. .+.+. ..+. ..+||+||-.|-.
T Consensus 2 ~~~~~~~ri~IV~s~fn~~I~~~Ll~ga~~~l~---~~gv~~~~i~v~~VPGa~EiP~a~~~l~~s~~~DavIaLG~VIr 78 (141)
T PLN02404 2 LLDGEGLRFGVVVARFNEIITKNLLEGALETFK---RYSVKEENIDVVWVPGSFEIPVVAQRLAKSGKYDAILCIGAVIR 78 (141)
T ss_pred CcCCCCCEEEEEEecCcHHHHHHHHHHHHHHHH---HcCCCccceEEEEcCcHHHHHHHHHHHHhcCCCCEEEEEEEEEe
Confidence 3445568998884 44445555443 333331 11653 444432 12211 2222 2369999877753
Q ss_pred CCCCCcc----hHHHHHHH--hCCCCcee
Q 037843 73 GAPQESG----ISFRTVLE--LGPTMPLF 95 (203)
Q Consensus 73 ~~~~~~~----~~~~~i~~--~~~~~Pil 95 (203)
|.....+ ....-|.+ +..++||.
T Consensus 79 GeT~H~e~V~~~v~~gl~~vsl~~~~PV~ 107 (141)
T PLN02404 79 GDTTHYDAVANSAASGVLSAGLNSGVPCI 107 (141)
T ss_pred CCCchhHHHHHHHHHHHHHHHhccCCCEE
Confidence 2222121 22233333 46789987
No 415
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=30.57 E-value=3.7e+02 Score=23.52 Aligned_cols=29 Identities=10% Similarity=0.017 Sum_probs=19.0
Q ss_pred EEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEe
Q 037843 15 IVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYR 49 (203)
Q Consensus 15 i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~ 49 (203)
|++|--+.+-...++++|.+. |+.|....
T Consensus 2 ~~~iGiggsGm~~la~~L~~~------G~~v~~~D 30 (448)
T TIGR01082 2 IHFVGIGGIGMSGIAEILLNR------GYQVSGSD 30 (448)
T ss_pred EEEEEECHHHHHHHHHHHHHC------CCeEEEEC
Confidence 566666655555577777777 77776654
No 416
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=30.56 E-value=2.4e+02 Score=21.43 Aligned_cols=23 Identities=4% Similarity=0.271 Sum_probs=18.6
Q ss_pred CcEEEEeCCchHHHHHHHHHHHh
Q 037843 13 NPIVVIDNYDSFTYNLCQYMGEL 35 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~~~l~~~ 35 (203)
.+|+|+|....+...+.+.|+..
T Consensus 4 ~~Ilivdd~~~~~~~l~~~L~~~ 26 (216)
T PRK10840 4 MNVIIADDHPIVLFGIRKSLEQI 26 (216)
T ss_pred eEEEEECCcHHHHHHHHHHHhcC
Confidence 57999999887777888888765
No 417
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=30.20 E-value=2.5e+02 Score=24.10 Aligned_cols=77 Identities=12% Similarity=0.177 Sum_probs=43.3
Q ss_pred eCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCCcee---
Q 037843 19 DNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGISFRTVLELGPTMPLF--- 95 (203)
Q Consensus 19 d~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~~~~~~Pil--- 95 (203)
+.++.|...+.+++.+. |..+.+.+.-..+-+.. -.-.+...|-- .|.-...+.+++.....|+.
T Consensus 87 ~s~s~y~r~L~~~~~~r------g~~~Vv~~~Rgcs~~~n----~~p~~yh~G~t--~D~~~~l~~l~~~~~~r~~~avG 154 (345)
T COG0429 87 SSNSPYARGLMRALSRR------GWLVVVFHFRGCSGEAN----TSPRLYHSGET--EDIRFFLDWLKARFPPRPLYAVG 154 (345)
T ss_pred CCcCHHHHHHHHHHHhc------CCeEEEEecccccCCcc----cCcceecccch--hHHHHHHHHHHHhCCCCceEEEE
Confidence 34445666777788777 98888876532221111 12233434321 12222345555545668887
Q ss_pred -ehhHHHHHHHhC
Q 037843 96 -CMGLKCIGEALE 107 (203)
Q Consensus 96 -ClG~Qlla~a~g 107 (203)
-||--+|+..+|
T Consensus 155 ~SLGgnmLa~ylg 167 (345)
T COG0429 155 FSLGGNMLANYLG 167 (345)
T ss_pred ecccHHHHHHHHH
Confidence 699988888876
No 418
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.12 E-value=2.6e+02 Score=23.25 Aligned_cols=53 Identities=11% Similarity=0.107 Sum_probs=37.1
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPG 71 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG 71 (203)
..+|+||..+.-.-..+..+|... |+.+.+.+....+..+... +.|.||.+=|
T Consensus 158 Gk~vvVIGrs~~VG~pla~lL~~~------gatVtv~~s~t~~l~~~~~-~ADIVIsAvg 210 (286)
T PRK14175 158 GKNAVVIGRSHIVGQPVSKLLLQK------NASVTILHSRSKDMASYLK-DADVIVSAVG 210 (286)
T ss_pred CCEEEEECCCchhHHHHHHHHHHC------CCeEEEEeCCchhHHHHHh-hCCEEEECCC
Confidence 578999988655667788888877 9999988765434444332 5688887544
No 419
>cd06329 PBP1_SBP_like_3 Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=30.05 E-value=3.2e+02 Score=22.57 Aligned_cols=81 Identities=10% Similarity=0.118 Sum_probs=41.1
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEE---EeCCc-cc----HHHHhccCCCEEEECCCCCCCCCcchHHH
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEV---YRNDE-LT----VAELKRKKPRGVVISPGPGAPQESGISFR 83 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v---~~~~~-~~----~~~l~~~~~dgiil~GG~~~~~~~~~~~~ 83 (203)
.++|.+|...+.+.....+.+++...+...|..+.. ++... .+ ..++...++|.|++.+.+. +...+.+
T Consensus 143 ~k~v~i~~~~~~~g~~~~~~~~~~~~~~~~G~~vv~~~~~~~~~~~d~~~~i~~l~~~~~d~v~~~~~~~---~~~~~~~ 219 (342)
T cd06329 143 GKKVYLINQDYSWGQDVAAAFKAMLAAKRPDIQIVGEDLHPLGKVKDFSPYVAKIKASGADTVITGNWGN---DLLLLVK 219 (342)
T ss_pred CceEEEEeCChHHHHHHHHHHHHHHHhhcCCcEEeceeccCCCCCCchHHHHHHHHHcCCCEEEEcccCc---hHHHHHH
Confidence 467888865455554444444333211112776642 22221 12 2345555899999966432 2223344
Q ss_pred HHHHhCCCCcee
Q 037843 84 TVLELGPTMPLF 95 (203)
Q Consensus 84 ~i~~~~~~~Pil 95 (203)
.+++.+-+.|++
T Consensus 220 ~~~~~g~~~~~~ 231 (342)
T cd06329 220 QAADAGLKLPFY 231 (342)
T ss_pred HHHHcCCCceEE
Confidence 445544567888
No 420
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=30.04 E-value=1.6e+02 Score=24.42 Aligned_cols=56 Identities=13% Similarity=0.144 Sum_probs=38.4
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCc-ccHHHH----hccCCCEEEECCCCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDE-LTVAEL----KRKKPRGVVISPGPG 73 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~-~~~~~l----~~~~~dgiil~GG~~ 73 (203)
.-+||=||-...|...-.+.-+.+ |+++.=+...+ ..++.+ ...+||-+||||=.+
T Consensus 104 PGrVLHiDGD~~YL~~Cl~~Ykql------~i~a~G~~~~E~eqp~~i~~Ll~~~~PDIlViTGHD~ 164 (283)
T TIGR02855 104 PGRVLHIDGDPEYLRKCLKLYKKI------GVPVVGIHCKEKEMPEKVLDLIEEVRPDILVITGHDA 164 (283)
T ss_pred CCcEEeecCCHHHHHHHHHHHHHh------CCceEEEEecchhchHHHHHHHHHhCCCEEEEeCchh
Confidence 457999998877877777777888 88876544322 223332 234899999998654
No 421
>TIGR00333 nrdI ribonucleoside-diphosphate reductase 2, operon protein nrdI. Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterized classes of RNRs differ by their metal cofactor and their stable organic radical. The exact function of nrdI within the ribonucleotide reductases has not yet been fully characterised.
Probab=29.93 E-value=1.6e+02 Score=21.22 Aligned_cols=59 Identities=17% Similarity=0.107 Sum_probs=31.8
Q ss_pred chHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhC
Q 037843 22 DSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGISFRTVLELG 89 (203)
Q Consensus 22 ~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~~~ 89 (203)
+|.+.|-.+.++++ |.++..++.+..+..++ +.+.|+|+...|.=.......+.+....
T Consensus 4 ~S~TGNte~fv~~l------g~~~~~i~~~~~d~~~~---~~~~vliTyT~G~G~vP~~~~~Fle~~~ 62 (125)
T TIGR00333 4 SSKTGNVQRFVEKL------GFQHIRIPVDETDDIHV---DQEFVLITYTGGFGAVPKQTISFLNKKH 62 (125)
T ss_pred EcccccHHHHHHHc------CCCcEEeecCCcchhhc---CCCEEEEecCCCCCcCCHHHHHHHHhhh
Confidence 45566666668788 87765554432223233 4688888665544111223445554443
No 422
>PRK08105 flavodoxin; Provisional
Probab=29.88 E-value=2.3e+02 Score=20.82 Aligned_cols=37 Identities=5% Similarity=0.091 Sum_probs=21.2
Q ss_pred CCcEEEE-eCCchHHHHHHHHHHHhhhhhcCCceEEEEeC
Q 037843 12 KNPIVVI-DNYDSFTYNLCQYMGELELELSQGYHFEVYRN 50 (203)
Q Consensus 12 ~~~i~ii-d~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~ 50 (203)
|.+|+|+ -...+++..+++.+.+... ..|+.+.+...
T Consensus 1 m~~i~I~YgS~tGnte~~A~~l~~~l~--~~g~~~~~~~~ 38 (149)
T PRK08105 1 MAKVGIFVGTVYGNALLVAEEAEAILT--AQGHEVTLFED 38 (149)
T ss_pred CCeEEEEEEcCchHHHHHHHHHHHHHH--hCCCceEEech
Confidence 3466666 4445566666665544322 12888877654
No 423
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=29.76 E-value=3.9e+02 Score=25.61 Aligned_cols=31 Identities=13% Similarity=-0.093 Sum_probs=25.8
Q ss_pred CcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEe
Q 037843 13 NPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYR 49 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~ 49 (203)
++|+||-.+.+-...++++|.+. |+.|....
T Consensus 5 ~~i~viG~G~sG~salA~~L~~~------G~~V~~sD 35 (809)
T PRK14573 5 LFYHFIGIGGIGMSALAHILLDR------GYSVSGSD 35 (809)
T ss_pred ceEEEEEecHHhHHHHHHHHHHC------CCeEEEEC
Confidence 56999999887777789999998 99987754
No 424
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=29.70 E-value=3.8e+02 Score=23.36 Aligned_cols=82 Identities=17% Similarity=0.280 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhhhhhcCCceEEEEeCCcccHHH---HhccCCCEEEECCCCCCCCCcch----HHHHHHH-hCCCCcee-
Q 037843 25 TYNLCQYMGELELELSQGYHFEVYRNDELTVAE---LKRKKPRGVVISPGPGAPQESGI----SFRTVLE-LGPTMPLF- 95 (203)
Q Consensus 25 ~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~---l~~~~~dgiil~GG~~~~~~~~~----~~~~i~~-~~~~~Pil- 95 (203)
++.-.+++++.. +.++.+--. .+.++ .....+|+|++++..|...+... ....+.+ +..++||+
T Consensus 241 tW~~i~~lr~~~-----~~pvivKgV--~~~~dA~~a~~~G~d~I~vsnhGGr~~d~~~~t~~~L~ei~~~~~~~~~vi~ 313 (383)
T cd03332 241 TWEDLAFLREWT-----DLPIVLKGI--LHPDDARRAVEAGVDGVVVSNHGGRQVDGSIAALDALPEIVEAVGDRLTVLF 313 (383)
T ss_pred CHHHHHHHHHhc-----CCCEEEecC--CCHHHHHHHHHCCCCEEEEcCCCCcCCCCCcCHHHHHHHHHHHhcCCCeEEE
Confidence 344445555542 555544322 23333 23358999999987775444332 1223333 45679999
Q ss_pred ----ehhHHHH-HHHhCCeeccc
Q 037843 96 ----CMGLKCI-GEALEGRLYVL 113 (203)
Q Consensus 96 ----ClG~Qll-a~a~gg~v~~~ 113 (203)
-.|..++ +.++|++....
T Consensus 314 dGGIr~G~Dv~KALaLGA~~v~i 336 (383)
T cd03332 314 DSGVRTGADIMKALALGAKAVLI 336 (383)
T ss_pred eCCcCcHHHHHHHHHcCCCEEEE
Confidence 3455554 45788876654
No 425
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=29.61 E-value=2.5e+02 Score=21.86 Aligned_cols=52 Identities=17% Similarity=0.293 Sum_probs=33.1
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCce-EEEEeCCcccHHHHhcc-CCCEEEECCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYH-FEVYRNDELTVAELKRK-KPRGVVISPG 71 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~-~~v~~~~~~~~~~l~~~-~~dgiil~GG 71 (203)
..+|.=||....-...+.+..+++ |++ ++++.-+ .++.+... .+|+++|.||
T Consensus 58 ~~~v~AIe~~~~a~~~~~~N~~~f------g~~n~~vv~g~--Ap~~L~~~~~~daiFIGGg 111 (187)
T COG2242 58 SGRVIAIERDEEALELIERNAARF------GVDNLEVVEGD--APEALPDLPSPDAIFIGGG 111 (187)
T ss_pred CceEEEEecCHHHHHHHHHHHHHh------CCCcEEEEecc--chHhhcCCCCCCEEEECCC
Confidence 355666666555566677777777 553 5555532 34555544 6999999777
No 426
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=29.55 E-value=3.3e+02 Score=23.21 Aligned_cols=84 Identities=14% Similarity=0.139 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHh--ccCCCEEEECCCCCCCCCcc-----hHHHHHHHhCCCCcee
Q 037843 23 SFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELK--RKKPRGVVISPGPGAPQESG-----ISFRTVLELGPTMPLF 95 (203)
Q Consensus 23 ~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~--~~~~dgiil~GG~~~~~~~~-----~~~~~i~~~~~~~Pil 95 (203)
|..+.=.++|+..+ ..++.+--.- ..++... ....+|||+|.=.|.--|+. .+.+.++..+.++|+|
T Consensus 209 Sl~W~Di~wLr~~T-----~LPIvvKGil-t~eDA~~Ave~G~~GIIVSNHGgRQlD~vpAtI~~L~Evv~aV~~ri~V~ 282 (363)
T KOG0538|consen 209 SLSWKDIKWLRSIT-----KLPIVVKGVL-TGEDARKAVEAGVAGIIVSNHGGRQLDYVPATIEALPEVVKAVEGRIPVF 282 (363)
T ss_pred CCChhhhHHHHhcC-----cCCeEEEeec-ccHHHHHHHHhCCceEEEeCCCccccCcccchHHHHHHHHHHhcCceEEE
Confidence 45666677888874 5555442211 1122222 23789999986544333332 2345566678899999
Q ss_pred -----ehhHHHH-HHHhCCeecc
Q 037843 96 -----CMGLKCI-GEALEGRLYV 112 (203)
Q Consensus 96 -----ClG~Qll-a~a~gg~v~~ 112 (203)
=.|--++ |.|||++-.-
T Consensus 283 lDGGVR~G~DVlKALALGAk~Vf 305 (363)
T KOG0538|consen 283 LDGGVRRGTDVLKALALGAKGVF 305 (363)
T ss_pred EecCcccchHHHHHHhcccceEE
Confidence 3454444 5677876543
No 427
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=29.45 E-value=3.7e+02 Score=23.09 Aligned_cols=71 Identities=17% Similarity=0.171 Sum_probs=40.9
Q ss_pred CceEEEEeCCcccHHH---HhccCCCEEEECCCCCCCCCcch----HHHHHHH-hCCCCcee-----ehhHHHH-HHHhC
Q 037843 42 GYHFEVYRNDELTVAE---LKRKKPRGVVISPGPGAPQESGI----SFRTVLE-LGPTMPLF-----CMGLKCI-GEALE 107 (203)
Q Consensus 42 g~~~~v~~~~~~~~~~---l~~~~~dgiil~GG~~~~~~~~~----~~~~i~~-~~~~~Pil-----ClG~Qll-a~a~g 107 (203)
+.++.+--. .+.++ +.+..+|+|+++|-.|.-.|.+. ....+++ +..++||+ ..|.-++ +.++|
T Consensus 225 ~~pvivKgv--~~~~da~~~~~~G~~~i~vs~hGGr~~d~~~~~~~~L~~i~~~~~~~~~i~~dgGir~g~Dv~kalaLG 302 (356)
T PF01070_consen 225 KLPVIVKGV--LSPEDAKRAVDAGVDGIDVSNHGGRQLDWGPPTIDALPEIRAAVGDDIPIIADGGIRRGLDVAKALALG 302 (356)
T ss_dssp SSEEEEEEE---SHHHHHHHHHTT-SEEEEESGTGTSSTTS-BHHHHHHHHHHHHTTSSEEEEESS--SHHHHHHHHHTT
T ss_pred CCceEEEec--ccHHHHHHHHhcCCCEEEecCCCcccCccccccccccHHHHhhhcCCeeEEEeCCCCCHHHHHHHHHcC
Confidence 777765432 33444 33458999999865554334332 1333444 56789999 6777655 66899
Q ss_pred Ceecccc
Q 037843 108 GRLYVLL 114 (203)
Q Consensus 108 g~v~~~~ 114 (203)
++.....
T Consensus 303 A~~v~ig 309 (356)
T PF01070_consen 303 ADAVGIG 309 (356)
T ss_dssp -SEEEES
T ss_pred CCeEEEc
Confidence 9877654
No 428
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=29.29 E-value=1.8e+02 Score=25.43 Aligned_cols=31 Identities=13% Similarity=0.131 Sum_probs=24.3
Q ss_pred CCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEE
Q 037843 11 DKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVY 48 (203)
Q Consensus 11 ~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~ 48 (203)
||++|||++.+ .....+.+.++++ |+++.++
T Consensus 1 ~~k~iLi~g~g-~~a~~i~~aa~~~------G~~vv~~ 31 (451)
T PRK08591 1 MFDKILIANRG-EIALRIIRACKEL------GIKTVAV 31 (451)
T ss_pred CcceEEEECCC-HHHHHHHHHHHHc------CCeEEEE
Confidence 47899999765 4567788899999 9988766
No 429
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.16 E-value=2.2e+02 Score=23.93 Aligned_cols=53 Identities=17% Similarity=0.130 Sum_probs=37.8
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPG 71 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG 71 (203)
.++|+||..+...-.-+...|.+. |+.+.+.+....++.++.. +.|.||..=|
T Consensus 159 Gk~V~vIG~s~ivG~PmA~~L~~~------gatVtv~~~~t~~l~e~~~-~ADIVIsavg 211 (301)
T PRK14194 159 GKHAVVIGRSNIVGKPMAALLLQA------HCSVTVVHSRSTDAKALCR-QADIVVAAVG 211 (301)
T ss_pred CCEEEEECCCCccHHHHHHHHHHC------CCEEEEECCCCCCHHHHHh-cCCEEEEecC
Confidence 578999987655566788888777 9999988655456666543 5688876433
No 430
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=29.02 E-value=3.5e+02 Score=23.51 Aligned_cols=49 Identities=22% Similarity=0.411 Sum_probs=31.8
Q ss_pred CCCCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhc--cCCCEEEE
Q 037843 9 KNDKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKR--KKPRGVVI 68 (203)
Q Consensus 9 ~~~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~--~~~dgiil 68 (203)
...+.+|++.|..+ +.-.+.+++. |.+++... ..+++++.. .++|++++
T Consensus 3 s~~~~~il~~e~~~---~~~~~~l~~~------g~~v~~~~--~~~~eel~~~i~~~~aviV 53 (406)
T KOG0068|consen 3 SADMRKILVAESLD---QACIEILKDN------GYQVEFKK--NLSLEELIEKIKDCDALIV 53 (406)
T ss_pred CCCcceEEEecccc---hHHHHHHHhc------CceEEEec--cCCHHHHHHHhccCCEEEE
Confidence 34455789888775 3445567777 88877653 255666543 27899887
No 431
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=28.97 E-value=1.9e+02 Score=23.52 Aligned_cols=30 Identities=17% Similarity=0.369 Sum_probs=18.1
Q ss_pred CceEEEEeCCccc------HHHHhcc--CCCEEEECCC
Q 037843 42 GYHFEVYRNDELT------VAELKRK--KPRGVVISPG 71 (203)
Q Consensus 42 g~~~~v~~~~~~~------~~~l~~~--~~dgiil~GG 71 (203)
|+.+.+...+... ...+... ++||||+.+.
T Consensus 30 g~~v~~~~~~~~~~~~~~~i~~~~~~~~~vdgiIi~~~ 67 (305)
T cd06324 30 GIELEVLYAERDRFLMLQQARTILQRPDKPDALIFTNE 67 (305)
T ss_pred CCeEEEEeCCCCHHHHHHHHHHHHHhccCCCEEEEcCC
Confidence 8888776543111 1123345 7999999764
No 432
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=28.82 E-value=2.6e+02 Score=26.54 Aligned_cols=70 Identities=16% Similarity=0.211 Sum_probs=38.8
Q ss_pred cEEEEeCCch--H----HHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHH--hccCCCEEEECCCCCCCCCc-chHHHH
Q 037843 14 PIVVIDNYDS--F----TYNLCQYMGELELELSQGYHFEVYRNDELTVAEL--KRKKPRGVVISPGPGAPQES-GISFRT 84 (203)
Q Consensus 14 ~i~iid~~~~--~----~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l--~~~~~dgiil~GG~~~~~~~-~~~~~~ 84 (203)
.|+||+...+ + ...+.+.|++. |+.+...... .+.-.+ ...++++||++= .+. ..+...
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~l~~~l~~~------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 69 (713)
T PRK15399 2 NIIAIMGPHGVFYKDEPIKELESALQAQ------GFQTIWPQNS-VDLLKFIEHNPRICGVIFDW-----DEYSLDLCSD 69 (713)
T ss_pred cEEEEecccccccccHHHHHHHHHHHHC------CcEEEEecCH-HHHHHHHhcccceeEEEEec-----ccchHHHHHH
Confidence 4667754421 1 23455556665 8888765432 122121 123678999972 221 225566
Q ss_pred HHHhCCCCcee
Q 037843 85 VLELGPTMPLF 95 (203)
Q Consensus 85 i~~~~~~~Pil 95 (203)
+++...++||+
T Consensus 70 ~~~~~~~~Pv~ 80 (713)
T PRK15399 70 INQLNEYLPLY 80 (713)
T ss_pred HHHhCCCCCEE
Confidence 67667789998
No 433
>PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function.
Probab=28.67 E-value=32 Score=28.02 Aligned_cols=36 Identities=19% Similarity=0.238 Sum_probs=25.7
Q ss_pred CEEEECCCCCCCCCcchHHHHHHH-hCCCCceeehhH
Q 037843 64 RGVVISPGPGAPQESGISFRTVLE-LGPTMPLFCMGL 99 (203)
Q Consensus 64 dgiil~GG~~~~~~~~~~~~~i~~-~~~~~PilClG~ 99 (203)
-.++|+|-||-+.-+....+.+.+ +..+.+|+|.||
T Consensus 4 li~~IPGNPGlv~fY~~Fl~~L~~~l~~~~~i~~ish 40 (266)
T PF10230_consen 4 LIVFIPGNPGLVEFYEEFLSALYEKLNPQFEILGISH 40 (266)
T ss_pred EEEEECCCCChHHHHHHHHHHHHHhCCCCCeeEEecC
Confidence 357899989887777666666666 467889985444
No 434
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=28.66 E-value=4.1e+02 Score=23.57 Aligned_cols=31 Identities=19% Similarity=0.179 Sum_probs=23.1
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEe
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYR 49 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~ 49 (203)
+++|+|+-.+.+-. .+++++... |+.+.+..
T Consensus 15 ~~~v~v~G~G~sG~-a~a~~L~~~------G~~V~~~D 45 (473)
T PRK00141 15 SGRVLVAGAGVSGR-GIAAMLSEL------GCDVVVAD 45 (473)
T ss_pred CCeEEEEccCHHHH-HHHHHHHHC------CCEEEEEC
Confidence 56799998876443 778888888 88776654
No 435
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=28.51 E-value=3.5e+02 Score=22.64 Aligned_cols=87 Identities=11% Similarity=0.086 Sum_probs=44.0
Q ss_pred CCcEEEEeCCchHHHH----HHHHHHHhhhhhcCCceEEEEeC---Cccc----HHHHhccCCCEEEECCCCCCCCCcch
Q 037843 12 KNPIVVIDNYDSFTYN----LCQYMGELELELSQGYHFEVYRN---DELT----VAELKRKKPRGVVISPGPGAPQESGI 80 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~----l~~~l~~~~~~~~~g~~~~v~~~---~~~~----~~~l~~~~~dgiil~GG~~~~~~~~~ 80 (203)
.++|++|-..+.+... +.+++++. |..+..... ...+ ...+...++|+|++.+... +...
T Consensus 140 ~~kvaiv~~~~~~g~~~~~~~~~~~~~~------G~~vv~~~~~~~~~~D~~~~v~~i~~~~pd~V~~~~~~~---~~~~ 210 (351)
T cd06334 140 GKKIALVYHDSPFGKEPIEALKALAEKL------GFEVVLEPVPPPGPNDQKAQWLQIRRSGPDYVILWGWGV---MNPV 210 (351)
T ss_pred CCeEEEEeCCCccchhhHHHHHHHHHHc------CCeeeeeccCCCCcccHHHHHHHHHHcCCCEEEEecccc---hHHH
Confidence 4778888544445444 44455555 777643221 1112 2345556899999855432 2223
Q ss_pred HHHHHHHhCCCCcee-e--hhHHHHHHHhC
Q 037843 81 SFRTVLELGPTMPLF-C--MGLKCIGEALE 107 (203)
Q Consensus 81 ~~~~i~~~~~~~Pil-C--lG~Qlla~a~g 107 (203)
+.+.+++.+-+.|++ + .+...+....|
T Consensus 211 ~~~~~~~~G~~~~~~~~~~~~~~~~~~~~g 240 (351)
T cd06334 211 AIKEAKRVGLDDKFIGNWWSGDEEDVKPAG 240 (351)
T ss_pred HHHHHHHcCCCceEEEeeccCcHHHHHHhh
Confidence 344445444445666 2 22344444444
No 436
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=28.42 E-value=1.4e+02 Score=18.10 Aligned_cols=72 Identities=18% Similarity=0.270 Sum_probs=35.7
Q ss_pred EEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCCcee
Q 037843 17 VIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGISFRTVLELGPTMPLF 95 (203)
Q Consensus 17 iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~~~~~~Pil 95 (203)
+++....+...+.+.++.. |..+............+....+|.+++...-.. .+.-...+.+++.....|++
T Consensus 2 ~~~~~~~~~~~l~~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~-~~~~~~~~~l~~~~~~~~~i 73 (113)
T cd00156 2 IVDDDPLIRELLRRLLEKE------GYEVVEAEDGEEALALLAEEKPDLILLDIMMPG-MDGLELLRRIRKRGPDIPII 73 (113)
T ss_pred eecCcHHHHHHHHHHHhhc------CceEEEecCHHHHHHHHHhCCCCEEEEecCCCC-CchHHHHHHHHHhCCCCCEE
Confidence 5566555566677777776 776654322111122333336788877332111 11112234444434557877
No 437
>PRK10401 DNA-binding transcriptional regulator GalS; Provisional
Probab=28.39 E-value=2.1e+02 Score=23.62 Aligned_cols=53 Identities=15% Similarity=0.135 Sum_probs=27.7
Q ss_pred CcEEEE--eCCchHHHHHH----HHHHHhhhhhcCCceEEEEeCCc-cc-----HHHHhccCCCEEEECCC
Q 037843 13 NPIVVI--DNYDSFTYNLC----QYMGELELELSQGYHFEVYRNDE-LT-----VAELKRKKPRGVVISPG 71 (203)
Q Consensus 13 ~~i~ii--d~~~~~~~~l~----~~l~~~~~~~~~g~~~~v~~~~~-~~-----~~~l~~~~~dgiil~GG 71 (203)
..|.++ +....|...+. +.+++. |+.+.+..... .. .+.+...++||||+.+.
T Consensus 60 ~~Igvi~~~~~~~f~~~l~~gi~~~~~~~------gy~~~~~~~~~~~~~~~~~i~~l~~~~vdGiIi~~~ 124 (346)
T PRK10401 60 DTIGVVVMDVSDAFFGALVKAVDLVAQQH------QKYVLIGNSYHEAEKERHAIEVLIRQRCNALIVHSK 124 (346)
T ss_pred CEEEEEeCCCCCccHHHHHHHHHHHHHHC------CCEEEEEcCCCChHHHHHHHHHHHhcCCCEEEEeCC
Confidence 456666 33333433333 444555 88877654321 11 12233347999999764
No 438
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.31 E-value=2.6e+02 Score=23.35 Aligned_cols=53 Identities=8% Similarity=0.051 Sum_probs=36.9
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPG 71 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG 71 (203)
.++|+||....-.-.-+..+|... |+.|++.+....+..+... +.|.||..=|
T Consensus 164 Gk~vvViGrs~iVGkPla~lL~~~------~atVtv~hs~T~~l~~~~~-~ADIvv~AvG 216 (287)
T PRK14176 164 GKNAVIVGHSNVVGKPMAAMLLNR------NATVSVCHVFTDDLKKYTL-DADILVVATG 216 (287)
T ss_pred CCEEEEECCCcccHHHHHHHHHHC------CCEEEEEeccCCCHHHHHh-hCCEEEEccC
Confidence 578899887655566788888877 9999998765445555432 5688776433
No 439
>COG0683 LivK ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]
Probab=28.29 E-value=3.7e+02 Score=22.73 Aligned_cols=90 Identities=19% Similarity=0.256 Sum_probs=47.9
Q ss_pred CcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEE---EeCCcccH----HHHhccCCCEEEECCCCCCCCCcchHHHHH
Q 037843 13 NPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEV---YRNDELTV----AELKRKKPRGVVISPGPGAPQESGISFRTV 85 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v---~~~~~~~~----~~l~~~~~dgiil~GG~~~~~~~~~~~~~i 85 (203)
++++||+..+.|...+.+.+++..++. |..+.. +.....+. .++...++|.|++.| .+ .+...+.+.+
T Consensus 149 k~v~ii~~~~~yg~~~~~~~~~~l~~~--G~~~~~~~~~~~~~~~~~~~v~~i~~~~~d~v~~~~-~~--~~~~~~~r~~ 223 (366)
T COG0683 149 KRVAIIGDDYAYGEGLADAFKAALKAL--GGEVVVEEVYAPGDTDFSALVAKIKAAGPDAVLVGG-YG--PDAALFLRQA 223 (366)
T ss_pred cEEEEEeCCCCcchhHHHHHHHHHHhC--CCeEEEEEeeCCCCCChHHHHHHHHhcCCCEEEECC-CC--ccchHHHHHH
Confidence 489999888888777776665543222 665322 22211222 344455789777744 32 2333445555
Q ss_pred HHhCCCCcee---ehhHHHHHHHhC
Q 037843 86 LELGPTMPLF---CMGLKCIGEALE 107 (203)
Q Consensus 86 ~~~~~~~Pil---ClG~Qlla~a~g 107 (203)
++.+-+..++ +.+........|
T Consensus 224 ~~~G~~~~~~~~~~~~~~~~~~~~~ 248 (366)
T COG0683 224 REQGLKAKLIGGDGAGTAEFEEIAG 248 (366)
T ss_pred HHcCCCCccccccccCchhhhhhcc
Confidence 5544334444 666655444444
No 440
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional
Probab=28.21 E-value=2e+02 Score=23.31 Aligned_cols=80 Identities=10% Similarity=0.160 Sum_probs=45.0
Q ss_pred CcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCC-EEEECCCCCCCCCc---ch-HHHHHHH
Q 037843 13 NPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPR-GVVISPGPGAPQES---GI-SFRTVLE 87 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~d-giil~GG~~~~~~~---~~-~~~~i~~ 87 (203)
..+++||.++. ...+.++|... -.++++-+.-.-...+...... -+++.||.-.+... +. ....++.
T Consensus 92 g~tIfld~GtT-~~~la~~L~~~-------~~ltVvTnsl~ia~~l~~~~~~~~v~l~GG~~~~~~~~~~G~~a~~~l~~ 163 (256)
T PRK10434 92 GDSIILDAGST-VLQMVPLLSRF-------NNITVMTNSLHIVNALSELDNEQTILMPGGTFRKKSASFHGQLAENAFEH 163 (256)
T ss_pred CCEEEEcCcHH-HHHHHHHhccC-------CCeEEEECCHHHHHHHhhCCCCCEEEEECCEEeCCCCeEECHHHHHHHHh
Confidence 45788898753 45567777543 1356665431122344432111 36677887655432 32 3566777
Q ss_pred hCCCCcee-ehhHH
Q 037843 88 LGPTMPLF-CMGLK 100 (203)
Q Consensus 88 ~~~~~Pil-ClG~Q 100 (203)
+.-++-++ |-|+-
T Consensus 164 ~~~D~afi~~~gi~ 177 (256)
T PRK10434 164 FTFDKLFIGTDGID 177 (256)
T ss_pred CcCCEEEEcCceec
Confidence 76678888 87765
No 441
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=28.14 E-value=1.5e+02 Score=22.86 Aligned_cols=24 Identities=13% Similarity=0.134 Sum_probs=19.2
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHh
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGEL 35 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~ 35 (203)
|.+|+|+|........+.+.++..
T Consensus 1 m~~IlIvdd~~~~~~~l~~~l~~~ 24 (238)
T PRK11697 1 MIKVLIVDDEPLAREELRELLQEE 24 (238)
T ss_pred CcEEEEECCCHHHHHHHHHHHhhC
Confidence 468999998777777788888776
No 442
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=27.93 E-value=2.2e+02 Score=22.20 Aligned_cols=38 Identities=8% Similarity=0.108 Sum_probs=21.8
Q ss_pred HHHHHHHhhhhhcCCceEEEEeCCcccH------HHHhccCCCEEEECCC
Q 037843 28 LCQYMGELELELSQGYHFEVYRNDELTV------AELKRKKPRGVVISPG 71 (203)
Q Consensus 28 l~~~l~~~~~~~~~g~~~~v~~~~~~~~------~~l~~~~~dgiil~GG 71 (203)
+.+.+++. |+.+.+...+.... +.+....+||||+.+.
T Consensus 21 ~~~~a~~~------g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgii~~~~ 64 (268)
T cd06270 21 VESVARKA------GKHLIITAGHHSAEKEREAIEFLLERRCDALILHSK 64 (268)
T ss_pred HHHHHHHC------CCEEEEEeCCCchHHHHHHHHHHHHcCCCEEEEecC
Confidence 44455555 88888765331111 1223347999999764
No 443
>COG1736 DPH2 Diphthamide synthase subunit DPH2 [Translation, ribosomal structure and biogenesis]
Probab=27.87 E-value=2e+02 Score=24.72 Aligned_cols=43 Identities=19% Similarity=0.193 Sum_probs=30.6
Q ss_pred HHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhcc-CCCEEEECCCCCC
Q 037843 26 YNLCQYMGELELELSQGYHFEVYRNDELTVAELKRK-KPRGVVISPGPGA 74 (203)
Q Consensus 26 ~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~-~~dgiil~GG~~~ 74 (203)
..+.+.+++. |.++..+-.+..+++++.++ .+|..|.+|=|--
T Consensus 257 ~~l~k~~~~~------g~~~~li~~~~i~p~~L~~f~~iD~~v~taCPRi 300 (347)
T COG1736 257 RELVKLLKEA------GKEVYLIVVDEISPDKLANFDDIDAFVNTACPRI 300 (347)
T ss_pred HHHHHHHHHc------CCceEEEEecCCCHHHHhcccceeEEEEecCCCc
Confidence 3455555565 76666565667889999887 7899999886543
No 444
>PRK10403 transcriptional regulator NarP; Provisional
Probab=27.35 E-value=2.5e+02 Score=20.59 Aligned_cols=79 Identities=13% Similarity=0.167 Sum_probs=39.5
Q ss_pred CCCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcc-cHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHH
Q 037843 10 NDKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDEL-TVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLE 87 (203)
Q Consensus 10 ~~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~-~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~ 87 (203)
.++.+|++++........+.+.++... +..+.....+.. ....+....+|.||+--.. +...+ .....++.
T Consensus 4 ~~~~~ilii~~~~~~~~~l~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~dlvi~d~~~--~~~~~~~~~~~l~~ 76 (215)
T PRK10403 4 ATPFQVLIVDDHPLMRRGVRQLLELDP-----GFEVVAEAGDGASAIDLANRLDPDVILLDLNM--KGMSGLDTLNALRR 76 (215)
T ss_pred ceeEEEEEEcCCHHHHHHHHHHHhcCC-----CCEEEEEeCCHHHHHHHHHhcCCCEEEEecCC--CCCcHHHHHHHHHH
Confidence 334679999987766666777775420 454432221111 1122333368988883321 11111 22344444
Q ss_pred hCCCCcee
Q 037843 88 LGPTMPLF 95 (203)
Q Consensus 88 ~~~~~Pil 95 (203)
.....|++
T Consensus 77 ~~~~~~ii 84 (215)
T PRK10403 77 DGVTAQII 84 (215)
T ss_pred hCCCCeEE
Confidence 44456776
No 445
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=27.22 E-value=1e+02 Score=25.11 Aligned_cols=40 Identities=18% Similarity=0.236 Sum_probs=22.3
Q ss_pred cCCCEEEECCCCCCCC---CcchHHHHHHHhCCCCcee-ehhHH
Q 037843 61 KKPRGVVISPGPGAPQ---ESGISFRTVLELGPTMPLF-CMGLK 100 (203)
Q Consensus 61 ~~~dgiil~GG~~~~~---~~~~~~~~i~~~~~~~Pil-ClG~Q 100 (203)
.++|.|+++|=--+.. +...+.+.++.+....|++ |+|-.
T Consensus 79 ~~pDlVli~GD~~d~~~~~~~~~~~~~L~~L~~~~pv~~V~GNH 122 (271)
T PRK11340 79 QKPDLILLGGDYVLFDMPLNFSAFSDVLSPLAECAPTFACFGNH 122 (271)
T ss_pred cCCCEEEEccCcCCCCccccHHHHHHHHHHHhhcCCEEEecCCC
Confidence 3789899876543211 1112344556555457888 76643
No 446
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=27.07 E-value=63 Score=28.86 Aligned_cols=47 Identities=15% Similarity=0.272 Sum_probs=30.5
Q ss_pred HhccCCCEEEECCCCCCCCCcchHHHHHHH-------------hCCCCcee--ehhHHHHHH
Q 037843 58 LKRKKPRGVVISPGPGAPQESGISFRTVLE-------------LGPTMPLF--CMGLKCIGE 104 (203)
Q Consensus 58 l~~~~~dgiil~GG~~~~~~~~~~~~~i~~-------------~~~~~Pil--ClG~Qlla~ 104 (203)
+...++|.+++-||.|+......+.+.+++ ..+++|.. |+|++-.+.
T Consensus 172 L~~~~I~~L~vIGGdgT~~~A~~L~ee~~~~g~~I~VIGIPKTIDNDI~~td~S~GFdTAv~ 233 (459)
T PTZ00286 172 LIRHGINILFTLGGDGTHRGALAIYKELRRRKLNISVVGIPKTIDNDIPIIDESFGFQTAVE 233 (459)
T ss_pred HHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCceEEEeccccCCCCCCcccCcCchHHHH
Confidence 344578999988998775544444343332 24677877 999996543
No 447
>PTZ00215 ribose 5-phosphate isomerase; Provisional
Probab=27.04 E-value=2.7e+02 Score=20.82 Aligned_cols=92 Identities=9% Similarity=0.163 Sum_probs=47.5
Q ss_pred CcEEEEeCCchH--HHHHHHHHHH--hhhhhcCCceEEEEeCC---cccHH--------HHhccCCC-EEEECCCCCCC-
Q 037843 13 NPIVVIDNYDSF--TYNLCQYMGE--LELELSQGYHFEVYRND---ELTVA--------ELKRKKPR-GVVISPGPGAP- 75 (203)
Q Consensus 13 ~~i~iid~~~~~--~~~l~~~l~~--~~~~~~~g~~~~v~~~~---~~~~~--------~l~~~~~d-giil~GG~~~~- 75 (203)
++|+|=.-+.+| ...+.++|++ . |.+|.-+-.+ ..+.. .+.....+ ||+++|..-..
T Consensus 3 mkI~igsDhaG~~lK~~l~~~L~~~~~------g~eV~D~G~~~~~~~dYp~~a~~va~~V~~~~~~~GIliCGtGiG~s 76 (151)
T PTZ00215 3 KKVAIGSDHAGFDLKNEIIDYIKNKGK------EYKIEDMGTYTAESVDYPDFAEKVCEEVLKGEADTGILVCGSGIGIS 76 (151)
T ss_pred cEEEEEeCCchHHHHHHHHHHHHhccC------CCEEEEcCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEEcCCcHHHH
Confidence 455554333334 5668889998 7 8776544221 11111 22222455 88887765221
Q ss_pred ---CCc---------chHHHHHHHhCCCCceeehhHHHHHHHhCCee
Q 037843 76 ---QES---------GISFRTVLELGPTMPLFCMGLKCIGEALEGRL 110 (203)
Q Consensus 76 ---~~~---------~~~~~~i~~~~~~~PilClG~Qlla~a~gg~v 110 (203)
+.. +.....+-+..++--|||+|..++...+.-.+
T Consensus 77 iaANK~~GIRAa~~~d~~~A~~ar~hNnaNVL~lGar~ig~~~a~~i 123 (151)
T PTZ00215 77 IAANKVKGIRCALCHDHYTARMSRQHNNANVLAFGGRTTGIEVAKEI 123 (151)
T ss_pred HHHhcCCCeEEEEECCHHHHHHHHHhcCCcEEEECccccCHHHHHHH
Confidence 110 11112222234567888999888776554443
No 448
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=27.01 E-value=4.1e+02 Score=24.04 Aligned_cols=57 Identities=16% Similarity=0.213 Sum_probs=31.8
Q ss_pred CCcEEEEeCCchHH---HHHHHHHHHhhhhhcCCceEEEEeCCcccHHH---HhccCCCEEEECCCCCC
Q 037843 12 KNPIVVIDNYDSFT---YNLCQYMGELELELSQGYHFEVYRNDELTVAE---LKRKKPRGVVISPGPGA 74 (203)
Q Consensus 12 ~~~i~iid~~~~~~---~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~---l~~~~~dgiil~GG~~~ 74 (203)
...|++||.-.+.. ...++++++.. .+..+..=.. .+.++ +....+|+|+++.|+|+
T Consensus 260 g~d~i~iD~~~g~~~~~~~~i~~ik~~~----p~~~vi~g~v--~t~e~a~~a~~aGaD~i~vg~g~G~ 322 (505)
T PLN02274 260 GVDVVVLDSSQGDSIYQLEMIKYIKKTY----PELDVIGGNV--VTMYQAQNLIQAGVDGLRVGMGSGS 322 (505)
T ss_pred CCCEEEEeCCCCCcHHHHHHHHHHHHhC----CCCcEEEecC--CCHHHHHHHHHcCcCEEEECCCCCc
Confidence 56788888765443 34566666641 1333322111 23333 33357999999877774
No 449
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=26.87 E-value=3.5e+02 Score=22.12 Aligned_cols=74 Identities=7% Similarity=0.161 Sum_probs=39.9
Q ss_pred CcEEEEeCCchHH-HHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCC------CCCcchHHHHH
Q 037843 13 NPIVVIDNYDSFT-YNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGA------PQESGISFRTV 85 (203)
Q Consensus 13 ~~i~iid~~~~~~-~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~------~~~~~~~~~~i 85 (203)
.+|.+.+....+. ..+++.|.+. |+++++++.. ...-+.. ++|.+++ |-..- .+..|...-.+
T Consensus 110 ~~V~v~ESrP~~eG~~~a~~L~~~------GI~vtli~Ds--a~~~~m~-~vd~Vlv-GAd~V~~nG~v~nkvGT~~~Al 179 (253)
T PRK06372 110 KSVYILESRPMLEGIDMAKLLVKS------GIDVVLLTDA--SMCEAVL-NVDAVIV-GSDSVLYDGGLIHKNGTFPLAL 179 (253)
T ss_pred CEEEEecCCCchHHHHHHHHHHHC------CCCEEEEehh--HHHHHHH-hCCEEEE-CccEEecCCCEeehhhHHHHHH
Confidence 4677777655443 3466677777 9999877532 2222222 5788888 33211 11222222223
Q ss_pred HHhCCCCcee-e
Q 037843 86 LELGPTMPLF-C 96 (203)
Q Consensus 86 ~~~~~~~Pil-C 96 (203)
-+...++|++ |
T Consensus 180 ~A~~~~vPv~V~ 191 (253)
T PRK06372 180 CARYLKKPFYSL 191 (253)
T ss_pred HHHHcCCCEEEE
Confidence 3334679999 5
No 450
>PF01606 Arteri_env: Arterivirus envelope protein; InterPro: IPR002556 This family consists of viral envelope proteins from the Arteriviridae; this includes Porcine reproductive and respiratory syndrome virus (PRRSV) envelope protein GP3 and Lactate dehydrogenase-elevating virus (LDV) structural glycoprotein. Arteriviruses consists of positive ssRNA and do not have a DNA stage.
Probab=26.83 E-value=10 Score=29.03 Aligned_cols=12 Identities=42% Similarity=0.620 Sum_probs=10.0
Q ss_pred cEEEEcCCCCCC
Q 037843 184 HLHGVQFHPESI 195 (203)
Q Consensus 184 ~i~gvQfHPE~~ 195 (203)
+.|+.|||||..
T Consensus 118 fsyaaqfhPEiF 129 (214)
T PF01606_consen 118 FSYAAQFHPEIF 129 (214)
T ss_pred HHHHHhhChhhh
Confidence 568889999975
No 451
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=26.82 E-value=2.3e+02 Score=23.04 Aligned_cols=38 Identities=18% Similarity=0.122 Sum_probs=21.9
Q ss_pred HHHHHHHHhhhhhcCCceEEEEeCCcccH------HHHhccCCCEEEECC
Q 037843 27 NLCQYMGELELELSQGYHFEVYRNDELTV------AELKRKKPRGVVISP 70 (203)
Q Consensus 27 ~l~~~l~~~~~~~~~g~~~~v~~~~~~~~------~~l~~~~~dgiil~G 70 (203)
.+.+.+++. |+.+.+...+.... +.+...++||||+.+
T Consensus 19 ~i~~~a~~~------g~~v~~~~~~~~~~~q~~~i~~l~~~~vDgIIi~~ 62 (302)
T TIGR02634 19 IFVAAAESL------GAKVFVQSANGNEAKQISQIENLIARGVDVLVIIP 62 (302)
T ss_pred HHHHHHHhc------CCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 344555555 88887765431111 122234799999975
No 452
>PRK10427 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=26.62 E-value=2.4e+02 Score=19.96 Aligned_cols=57 Identities=12% Similarity=0.176 Sum_probs=32.3
Q ss_pred CcEEEEeCCchH--HHHHHHHHHHhhhhhcCCceEEEEe------CCcccHHHHhccCCCEEEECCCCC
Q 037843 13 NPIVVIDNYDSF--TYNLCQYMGELELELSQGYHFEVYR------NDELTVAELKRKKPRGVVISPGPG 73 (203)
Q Consensus 13 ~~i~iid~~~~~--~~~l~~~l~~~~~~~~~g~~~~v~~------~~~~~~~~l~~~~~dgiil~GG~~ 73 (203)
.-++|..+-.+. +++..++|++.... .|..+.+-. .+..+.+++. ..|.||+.|...
T Consensus 4 kivaVtacp~GiAht~lAAeaL~kAA~~--~G~~i~VE~qg~~g~~~~lt~~~i~--~Ad~VIia~d~~ 68 (114)
T PRK10427 4 YLVAVTACVSGVAHTYMAAERLEKLCQL--EKWGVKIETQGALGTENRLTDEDIR--RADVVLLITDIE 68 (114)
T ss_pred eEEEEeeCCCcHHHHHHHHHHHHHHHHH--CCCeEEEEecCCcCcCCCCCHHHHH--hCCEEEEEecCC
Confidence 345666666655 44555666655322 277766421 1124556776 459999977653
No 453
>PLN02778 3,5-epimerase/4-reductase
Probab=26.56 E-value=3.6e+02 Score=22.07 Aligned_cols=56 Identities=16% Similarity=0.100 Sum_probs=33.4
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHH----HHhccCCCEEEECCCCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVA----ELKRKKPRGVVISPGPG 73 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~----~l~~~~~dgiil~GG~~ 73 (203)
+++|+|.-..+-.-..++++|.+. |.++.....+..+.+ ++...++|.||=+.|..
T Consensus 9 ~~kiLVtG~tGfiG~~l~~~L~~~------g~~V~~~~~~~~~~~~v~~~l~~~~~D~ViH~Aa~~ 68 (298)
T PLN02778 9 TLKFLIYGKTGWIGGLLGKLCQEQ------GIDFHYGSGRLENRASLEADIDAVKPTHVFNAAGVT 68 (298)
T ss_pred CCeEEEECCCCHHHHHHHHHHHhC------CCEEEEecCccCCHHHHHHHHHhcCCCEEEECCccc
Confidence 456777665433346688888887 888764332212222 33344789999666654
No 454
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=26.43 E-value=1.2e+02 Score=25.82 Aligned_cols=21 Identities=24% Similarity=0.445 Sum_probs=15.8
Q ss_pred cEEEEEeCCCCcEEEEcCCCCCC
Q 037843 173 LIMAARHKKYKHLHGVQFHPESI 195 (203)
Q Consensus 173 ~v~a~~~~~~~~i~gvQfHPE~~ 195 (203)
...-|+... | +|+.||||-..
T Consensus 99 ~l~rirf~s-p-v~~~q~hp~k~ 119 (405)
T KOG1273|consen 99 PLKRIRFDS-P-VWGAQWHPRKR 119 (405)
T ss_pred ceeEEEccC-c-cceeeeccccC
Confidence 566677665 5 99999999654
No 455
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=26.42 E-value=2e+02 Score=22.84 Aligned_cols=28 Identities=11% Similarity=0.181 Sum_probs=17.3
Q ss_pred CceEEEEeCCcccHH-------HHhccCCCEEEECC
Q 037843 42 GYHFEVYRNDELTVA-------ELKRKKPRGVVISP 70 (203)
Q Consensus 42 g~~~~v~~~~~~~~~-------~l~~~~~dgiil~G 70 (203)
|+.+.+...+. +.+ .+...++||||+.+
T Consensus 29 G~~~~~~~~~~-d~~~~~~~i~~~~~~~vdgiii~~ 63 (272)
T cd06313 29 GVDVTWYGGAL-DAVKQVAAIENMASQGWDFIAVDP 63 (272)
T ss_pred CCEEEEecCCC-CHHHHHHHHHHHHHcCCCEEEEcC
Confidence 89988775432 211 22234789999965
No 456
>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR). Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=26.36 E-value=3e+02 Score=21.53 Aligned_cols=29 Identities=10% Similarity=0.035 Sum_probs=16.1
Q ss_pred CceEEEEeCCc-ccHHHHhccCCCEEEECC
Q 037843 42 GYHFEVYRNDE-LTVAELKRKKPRGVVISP 70 (203)
Q Consensus 42 g~~~~v~~~~~-~~~~~l~~~~~dgiil~G 70 (203)
|..+.+...+. .-.+.+...++||||+.+
T Consensus 29 g~~~~~~~~~~~~~~~~l~~~~vdGiI~~~ 58 (265)
T cd01543 29 PWSIYLEPRGLQEPLRWLKDWQGDGIIARI 58 (265)
T ss_pred CeEEEEecccchhhhhhccccccceEEEEC
Confidence 77776543321 112233344799999964
No 457
>PRK04148 hypothetical protein; Provisional
Probab=26.16 E-value=2.5e+02 Score=20.51 Aligned_cols=32 Identities=19% Similarity=0.312 Sum_probs=23.9
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRND 51 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~ 51 (203)
..+|++|-.+ |-..++..|.+. |.++..+..+
T Consensus 17 ~~kileIG~G--fG~~vA~~L~~~------G~~ViaIDi~ 48 (134)
T PRK04148 17 NKKIVELGIG--FYFKVAKKLKES------GFDVIVIDIN 48 (134)
T ss_pred CCEEEEEEec--CCHHHHHHHHHC------CCEEEEEECC
Confidence 4678888876 445677788888 9999888755
No 458
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=25.97 E-value=4.3e+02 Score=22.72 Aligned_cols=76 Identities=14% Similarity=0.217 Sum_probs=50.0
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCC---cccHHHHhc----cCCCEEEECCCCCCCCCcchHHHH
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRND---ELTVAELKR----KKPRGVVISPGPGAPQESGISFRT 84 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~---~~~~~~l~~----~~~dgiil~GG~~~~~~~~~~~~~ 84 (203)
..+|+++-.+ .|.+..++..+.. |++|.+++.+ ..+.+++.. -.+..|.++=|..+..-...+.+.
T Consensus 92 gd~vLv~~~G-~wg~ra~D~~~r~------ga~V~~v~~~~G~~~~le~i~~~lsqh~p~~vfv~hgdsSTgV~q~~~~~ 164 (385)
T KOG2862|consen 92 GDNVLVVSTG-TWGQRAADCARRY------GAEVDVVEADIGQAVPLEEITEKLSQHKPKAVFVTHGDSSTGVLQDLLAI 164 (385)
T ss_pred CCeEEEEEec-hHHHHHHHHHHhh------CceeeEEecCcccCccHHHHHHHHHhcCCceEEEEecCccccccchHHHH
Confidence 4567777765 5778888999999 9999998754 234555542 378999998887665444444444
Q ss_pred HHHhCCCCce
Q 037843 85 VLELGPTMPL 94 (203)
Q Consensus 85 i~~~~~~~Pi 94 (203)
+.++.++-+.
T Consensus 165 ~g~lc~k~~~ 174 (385)
T KOG2862|consen 165 SGELCHKHEA 174 (385)
T ss_pred HHHHhhcCCe
Confidence 4444333343
No 459
>PRK13509 transcriptional repressor UlaR; Provisional
Probab=25.92 E-value=3.1e+02 Score=22.09 Aligned_cols=77 Identities=16% Similarity=0.066 Sum_probs=44.2
Q ss_pred CcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccH-HHHhcc-CCCEEEECCCCCCCCC---cchHHHHHHH
Q 037843 13 NPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTV-AELKRK-KPRGVVISPGPGAPQE---SGISFRTVLE 87 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~-~~l~~~-~~dgiil~GG~~~~~~---~~~~~~~i~~ 87 (203)
..+++||.++. ...+++++... ++.++-+. ... ..+... +++ +++.||.-.+.. .+.....++.
T Consensus 94 g~~Ifld~GsT-~~~la~~L~~~--------~ltVvTns-l~ia~~l~~~~~~~-v~l~GG~~~~~~~~~~G~~~~~l~~ 162 (251)
T PRK13509 94 GESVVINCGST-AFLLGRELCGK--------PVQIITNY-LPLANYLIDQEHDS-VIIMGGQYNKSQSITLSPQGSENSL 162 (251)
T ss_pred CCEEEECCcHH-HHHHHHHhCCC--------CeEEEeCC-HHHHHHHHhCCCCE-EEEECCeEcCCcceeECHHHHHHHh
Confidence 45788898753 34566766443 35666543 322 333322 333 666688655443 2333456666
Q ss_pred hCCCCcee-ehhHH
Q 037843 88 LGPTMPLF-CMGLK 100 (203)
Q Consensus 88 ~~~~~Pil-ClG~Q 100 (203)
+.-++-++ |-|.-
T Consensus 163 ~~~d~aFig~~gi~ 176 (251)
T PRK13509 163 YAGHWMFTSGKGLT 176 (251)
T ss_pred CcCCEEEECCCcCC
Confidence 66667888 98876
No 460
>PTZ00068 60S ribosomal protein L13a; Provisional
Probab=25.87 E-value=2.4e+02 Score=22.26 Aligned_cols=36 Identities=22% Similarity=0.203 Sum_probs=24.6
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRN 50 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~ 50 (203)
+.+..|||..+.....|+..+....+ .|-.|.|++.
T Consensus 2 ~~~w~vIDA~g~vLGRLAS~VAk~Ll---~Gd~VVVVNa 37 (202)
T PTZ00068 2 FKKVIVIDCKGHLLGRLASVVAKELL---LGQKIVVVRC 37 (202)
T ss_pred CCceEEEECCCCcHHHHHHHHHHHHh---CCCEEEEEec
Confidence 45688999988777766665555422 3888888754
No 461
>PRK12361 hypothetical protein; Provisional
Probab=25.79 E-value=1.8e+02 Score=26.36 Aligned_cols=14 Identities=21% Similarity=0.237 Sum_probs=11.8
Q ss_pred CCCEEEECCCCCCC
Q 037843 62 KPRGVVISPGPGAP 75 (203)
Q Consensus 62 ~~dgiil~GG~~~~ 75 (203)
++|.||+.||.|..
T Consensus 297 ~~d~Viv~GGDGTl 310 (547)
T PRK12361 297 GADIVIACGGDGTV 310 (547)
T ss_pred CCCEEEEECCCcHH
Confidence 67999999999863
No 462
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=25.74 E-value=2.7e+02 Score=25.09 Aligned_cols=30 Identities=13% Similarity=0.165 Sum_probs=22.4
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEE
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVY 48 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~ 48 (203)
.+||||++.+. ..-.+.+.++++ |+.+..+
T Consensus 2 ~~kvLIan~Ge-ia~~iiraar~l------Gi~~V~v 31 (499)
T PRK08654 2 FKKILIANRGE-IAIRVMRACREL------GIKTVAV 31 (499)
T ss_pred cceEEEECCcH-HHHHHHHHHHHc------CCeEEEE
Confidence 46888888763 455678888998 9986655
No 463
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=25.60 E-value=3.8e+02 Score=21.99 Aligned_cols=33 Identities=9% Similarity=-0.152 Sum_probs=22.1
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRN 50 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~ 50 (203)
|++|||+..+... .+++.+++.+ .|.++.....
T Consensus 1 ~~~vLv~g~~~~~--~~~~~l~~~~----~g~~vi~~d~ 33 (326)
T PRK12767 1 MMNILVTSAGRRV--QLVKALKKSL----LKGRVIGADI 33 (326)
T ss_pred CceEEEecCCccH--HHHHHHHHhc----cCCEEEEECC
Confidence 5789999886543 7778888771 1377666543
No 464
>PRK10651 transcriptional regulator NarL; Provisional
Probab=25.58 E-value=2.8e+02 Score=20.44 Aligned_cols=80 Identities=10% Similarity=0.112 Sum_probs=39.3
Q ss_pred CCCCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCc-ccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHH
Q 037843 9 KNDKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDE-LTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVL 86 (203)
Q Consensus 9 ~~~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~-~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~ 86 (203)
+....+|+|++........+.+.++... +..+...-.+. .....+....+|.+++--.. +...+ .....++
T Consensus 3 ~~~~~~iliv~~~~~~~~~l~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~dlvl~d~~l--~~~~~~~~~~~l~ 75 (216)
T PRK10651 3 NQEPATILLIDDHPMLRTGVKQLISMAP-----DITVVGEASNGEQGIELAESLDPDLILLDLNM--PGMNGLETLDKLR 75 (216)
T ss_pred CCcceEEEEECCCHHHHHHHHHHHccCC-----CcEEEEEeCCHHHHHHHHHhCCCCEEEEeCCC--CCCcHHHHHHHHH
Confidence 3345789999987766677777775531 33332211111 11122333368888873221 11111 2334444
Q ss_pred HhCCCCcee
Q 037843 87 ELGPTMPLF 95 (203)
Q Consensus 87 ~~~~~~Pil 95 (203)
......|++
T Consensus 76 ~~~~~~~vi 84 (216)
T PRK10651 76 EKSLSGRIV 84 (216)
T ss_pred HhCCCCcEE
Confidence 444456776
No 465
>PRK09492 treR trehalose repressor; Provisional
Probab=25.44 E-value=2.8e+02 Score=22.37 Aligned_cols=37 Identities=22% Similarity=0.279 Sum_probs=21.0
Q ss_pred HHHHHHHhhhhhcCCceEEEEeCCc-cc-----HHHHhccCCCEEEECC
Q 037843 28 LCQYMGELELELSQGYHFEVYRNDE-LT-----VAELKRKKPRGVVISP 70 (203)
Q Consensus 28 l~~~l~~~~~~~~~g~~~~v~~~~~-~~-----~~~l~~~~~dgiil~G 70 (203)
+.+.+++. |+.+.+...+. .. ...+...++||+|+.+
T Consensus 84 i~~~~~~~------gy~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~ 126 (315)
T PRK09492 84 MLPAFYEQ------GYDPIIMESQFSPEKVNEHLGVLKRRNVDGVILFG 126 (315)
T ss_pred HHHHHHHc------CCeEEEEecCCChHHHHHHHHHHHhcCCCEEEEeC
Confidence 44555555 88887665421 11 1122334789999976
No 466
>COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]
Probab=25.41 E-value=2.2e+02 Score=23.00 Aligned_cols=81 Identities=15% Similarity=0.139 Sum_probs=48.1
Q ss_pred CcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCc---ch-HHHHHHHh
Q 037843 13 NPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQES---GI-SFRTVLEL 88 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~---~~-~~~~i~~~ 88 (203)
-..++||.++ .+..++++|... . .+.++-+.-.....+....-.-++++||.-.+... +. ....++.+
T Consensus 92 g~~ifld~GT-T~~~la~~L~~~------~-~ltviTNsl~ia~~l~~~~~~~vi~~GG~~~~~~~~~~G~~a~~~l~~~ 163 (253)
T COG1349 92 GDTIFLDAGT-TTLALARALPDD------N-NLTVITNSLNIAAALLEKPNIEVILLGGTVRKKSGSFVGPLAEEFLRQF 163 (253)
T ss_pred CCEEEECCCc-HHHHHHHHhCcC------C-CeEEEeCCHHHHHHHHhCCCCeEEEeCcEEEcCCCeEEcHHHHHHHHhC
Confidence 4578899875 456677766544 2 26666554222344443323345677887655433 22 35667777
Q ss_pred CCCCcee-ehhHHH
Q 037843 89 GPTMPLF-CMGLKC 101 (203)
Q Consensus 89 ~~~~Pil-ClG~Ql 101 (203)
.-++-++ |-|...
T Consensus 164 ~~d~aFig~~gi~~ 177 (253)
T COG1349 164 NFDKAFIGADGIDL 177 (253)
T ss_pred cccEEEEeccccCC
Confidence 6677888 888775
No 467
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=25.17 E-value=1.6e+02 Score=20.81 Aligned_cols=73 Identities=18% Similarity=0.132 Sum_probs=36.3
Q ss_pred HHHHHHHHhhhhhcCCceEEEEeCCcc-cHHHHh----ccCC-CEEEECCCCCCCCCcchHHHHHHHh-CCC----Ccee
Q 037843 27 NLCQYMGELELELSQGYHFEVYRNDEL-TVAELK----RKKP-RGVVISPGPGAPQESGISFRTVLEL-GPT----MPLF 95 (203)
Q Consensus 27 ~l~~~l~~~~~~~~~g~~~~v~~~~~~-~~~~l~----~~~~-dgiil~GG~~~~~~~~~~~~~i~~~-~~~----~Pil 95 (203)
.+.+.++.. +..+.++..... ...++. ...+ |.||+.||.|. +.+.+..+ ... .|+-
T Consensus 19 ~v~~~l~~~------~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~ivv~GGDGT------l~~vv~~l~~~~~~~~~~l~ 86 (130)
T PF00781_consen 19 KVEPALRAA------GIDYEVIETESAGHAEALARILALDDYPDVIVVVGGDGT------LNEVVNGLMGSDREDKPPLG 86 (130)
T ss_dssp HHHHHHHHT------TCEEEEEEESSTTHHHHHHHHHHHTTS-SEEEEEESHHH------HHHHHHHHCTSTSSS--EEE
T ss_pred HHHHHHHHc------CCceEEEEEeccchHHHHHHHHhhccCccEEEEEcCccH------HHHHHHHHhhcCCCccceEE
Confidence 355666666 777766654321 122221 1245 89999999654 33444443 221 2443
Q ss_pred ---ehhHHHHHHHhCCeec
Q 037843 96 ---CMGLKCIGEALEGRLY 111 (203)
Q Consensus 96 ---ClG~Qlla~a~gg~v~ 111 (203)
|-=.-.++..+|....
T Consensus 87 iiP~GT~N~~ar~lg~~~~ 105 (130)
T PF00781_consen 87 IIPAGTGNDFARSLGIPSD 105 (130)
T ss_dssp EEE-SSS-HHHHHTT--SS
T ss_pred EecCCChhHHHHHcCCCCC
Confidence 6556667777765443
No 468
>PRK09526 lacI lac repressor; Reviewed
Probab=25.13 E-value=2.7e+02 Score=22.83 Aligned_cols=28 Identities=29% Similarity=0.451 Sum_probs=16.7
Q ss_pred CceEEEEeCCcccH-------HHHhccCCCEEEEC
Q 037843 42 GYHFEVYRNDELTV-------AELKRKKPRGVVIS 69 (203)
Q Consensus 42 g~~~~v~~~~~~~~-------~~l~~~~~dgiil~ 69 (203)
|+.+.+...+..+. +.+...++||||+.
T Consensus 93 g~~~~i~~~~~~~~~~~~~~l~~l~~~~vdGiii~ 127 (342)
T PRK09526 93 GYSVVISMVERSGVEACQAAVNELLAQRVSGVIIN 127 (342)
T ss_pred CCEEEEEeCCCChHHHHHHHHHHHHhcCCCEEEEe
Confidence 89987765432111 12333479999995
No 469
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=25.12 E-value=1.6e+02 Score=27.75 Aligned_cols=76 Identities=14% Similarity=0.161 Sum_probs=43.9
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhC-
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELG- 89 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~- 89 (203)
..+|+|+|....+...+.+.++.. |+.+.....-....+.+....||.|++-- ..|...+ ...+.+++..
T Consensus 525 ~~~ILivdD~~~~~~~l~~~L~~~------g~~v~~a~~~~eal~~~~~~~~Dlvl~D~--~mp~~~G~e~~~~ir~~~~ 596 (779)
T PRK11091 525 ALNILLVEDIELNVIVARSVLEKL------GNSVDVAMTGKEALEMFDPDEYDLVLLDI--QLPDMTGLDIARELRERYP 596 (779)
T ss_pred ccceEEEcCCHHHHHHHHHHHHHc------CCEEEEECCHHHHHHHhhcCCCCEEEEcC--CCCCCCHHHHHHHHHhccc
Confidence 367999998877777888888888 88876543211112223334689888721 1232222 2345555532
Q ss_pred -CCC-cee
Q 037843 90 -PTM-PLF 95 (203)
Q Consensus 90 -~~~-Pil 95 (203)
..+ |++
T Consensus 597 ~~~~~~ii 604 (779)
T PRK11091 597 REDLPPLV 604 (779)
T ss_pred cCCCCcEE
Confidence 443 776
No 470
>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=25.08 E-value=77 Score=28.17 Aligned_cols=47 Identities=13% Similarity=0.181 Sum_probs=29.9
Q ss_pred HhccCCCEEEECCCCCCCCCcchHHHHHHHh-------------CCCCcee--ehhHHHHHH
Q 037843 58 LKRKKPRGVVISPGPGAPQESGISFRTVLEL-------------GPTMPLF--CMGLKCIGE 104 (203)
Q Consensus 58 l~~~~~dgiil~GG~~~~~~~~~~~~~i~~~-------------~~~~Pil--ClG~Qlla~ 104 (203)
+...++|.+++-||.|+......+.+.+++. .+++|.. |+|++--..
T Consensus 168 L~~~~I~~L~vIGGdgT~~gA~~l~ee~~~~g~~I~VIGIPKTIDNDi~~td~S~GFdTAv~ 229 (443)
T PRK06830 168 LERMNINILFVIGGDGTLRGASAIAEEIERRGLKISVIGIPKTIDNDINFIQKSFGFETAVE 229 (443)
T ss_pred HHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCceEEEeccccCCCCcCcccCCCHHHHHH
Confidence 3345789999889987654443333333321 3677777 999996543
No 471
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional
Probab=25.07 E-value=1.9e+02 Score=23.61 Aligned_cols=79 Identities=13% Similarity=0.143 Sum_probs=46.2
Q ss_pred CcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhcc-CCCEEEECCCCCCCCCc---ch-HHHHHHH
Q 037843 13 NPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRK-KPRGVVISPGPGAPQES---GI-SFRTVLE 87 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~-~~dgiil~GG~~~~~~~---~~-~~~~i~~ 87 (203)
-.+++||.++. ...+.++|... -++.++-++-.-...+... +++ ++++||.-.+... +. ..+.++.
T Consensus 107 gd~Ifld~GtT-~~~la~~L~~~-------~~ltVvTnsl~ia~~l~~~~~~~-v~llGG~~~~~~~~~~G~~a~~~l~~ 177 (269)
T PRK09802 107 GHRVILDSGTT-TFEIARLMRKH-------TDVIAMTNGMNVANALLEAEGVE-LLMTGGHLRRQSQSFYGDQAEQSLQN 177 (269)
T ss_pred CCEEEECCchH-HHHHHHhcCcC-------CCeEEEeCCHHHHHHHHhCCCCE-EEEECCEEecCCCceECHHHHHHHHh
Confidence 45788898753 45567777443 2466665542122333321 334 6677887665432 33 3566777
Q ss_pred hCCCCcee-ehhHH
Q 037843 88 LGPTMPLF-CMGLK 100 (203)
Q Consensus 88 ~~~~~Pil-ClG~Q 100 (203)
+.-++-++ |-|..
T Consensus 178 ~~~d~afig~~gi~ 191 (269)
T PRK09802 178 YHFDMLFLGVDAID 191 (269)
T ss_pred ccCCEEEEcCceec
Confidence 76678888 88875
No 472
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.02 E-value=2.5e+02 Score=23.36 Aligned_cols=53 Identities=9% Similarity=0.065 Sum_probs=36.0
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPG 71 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG 71 (203)
..+|+||+.....-.-+..++... |+.+++....+.+..+... +.|.||-+=|
T Consensus 152 Gk~V~ViGrs~~vGrpla~lL~~~------~atVtv~hs~t~~L~~~~~-~ADIvI~Avg 204 (279)
T PRK14178 152 GKRAVVVGRSIDVGRPMAALLLNA------DATVTICHSKTENLKAELR-QADILVSAAG 204 (279)
T ss_pred CCEEEEECCCccccHHHHHHHHhC------CCeeEEEecChhHHHHHHh-hCCEEEECCC
Confidence 578999988655556677777777 8999888765444444332 5677776443
No 473
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.97 E-value=3.1e+02 Score=22.85 Aligned_cols=60 Identities=18% Similarity=0.156 Sum_probs=0.0
Q ss_pred ccccccCCCCCcEEEEeCCc-----hHHHHHHHHHHHhhhhhcCCceEEEEeCCcc-cHHHHhcc--------CCCEEEE
Q 037843 3 EVLKLSKNDKNPIVVIDNYD-----SFTYNLCQYMGELELELSQGYHFEVYRNDEL-TVAELKRK--------KPRGVVI 68 (203)
Q Consensus 3 ~~~~~~~~~~~~i~iid~~~-----~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~-~~~~l~~~--------~~dgiil 68 (203)
+.++-.....++.++|.-++ .|..+..+..++. |+.++.+...+. +.+++... +.|||++
T Consensus 24 ~~l~~~~~~~P~Laii~vg~d~as~~Yv~~k~k~~~~~------Gi~~~~~~l~~~~s~~el~~~I~~lN~D~~V~GIlv 97 (284)
T PRK14177 24 EERKTKNKRIPKLATILVGNNPASETYVSMKVKACHKV------GMGSEMIRLKEQTTTEELLGVIDKLNLDPNVDGILL 97 (284)
T ss_pred HHHHhcCCCCCeEEEEEeCCChhHHHHHHHHHHHHHHc------CCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEE
No 474
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=24.86 E-value=1.7e+02 Score=25.18 Aligned_cols=29 Identities=17% Similarity=0.304 Sum_probs=19.7
Q ss_pred CCCEEEECCCCCCCCCcchHHHHHHHhCCCCceee
Q 037843 62 KPRGVVISPGPGAPQESGISFRTVLELGPTMPLFC 96 (203)
Q Consensus 62 ~~dgiil~GG~~~~~~~~~~~~~i~~~~~~~PilC 96 (203)
..|.|++.||.|.. .+.......++|+||
T Consensus 100 gVdlIvfaGGDGTa------rDVa~av~~~vPvLG 128 (355)
T COG3199 100 GVDLIVFAGGDGTA------RDVAEAVGADVPVLG 128 (355)
T ss_pred CceEEEEeCCCccH------HHHHhhccCCCceEe
Confidence 58999999997753 222333466789883
No 475
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=24.79 E-value=2.5e+02 Score=21.86 Aligned_cols=29 Identities=17% Similarity=0.383 Sum_probs=17.9
Q ss_pred CceEEEEeCCcccHH-------HHhccCCCEEEECCC
Q 037843 42 GYHFEVYRNDELTVA-------ELKRKKPRGVVISPG 71 (203)
Q Consensus 42 g~~~~v~~~~~~~~~-------~l~~~~~dgiil~GG 71 (203)
|+.+.+...+. +.+ .+...++||||+.+.
T Consensus 29 g~~~~~~~~~~-~~~~~~~~i~~l~~~~vdgiii~~~ 64 (269)
T cd06275 29 GYNLILCNTEG-DPERQRSYLRMLAQKRVDGLLVMCS 64 (269)
T ss_pred CCEEEEEeCCC-ChHHHHHHHHHHHHcCCCEEEEecC
Confidence 88887765432 221 222347999999774
No 476
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=24.71 E-value=4.3e+02 Score=22.29 Aligned_cols=32 Identities=16% Similarity=0.117 Sum_probs=20.0
Q ss_pred CCcEEEEeCCchH--------HHHHHHHHHHhhhhhcCCceEEEEe
Q 037843 12 KNPIVVIDNYDSF--------TYNLCQYMGELELELSQGYHFEVYR 49 (203)
Q Consensus 12 ~~~i~iid~~~~~--------~~~l~~~l~~~~~~~~~g~~~~v~~ 49 (203)
|.+|+||--+.|. ..++.++|.+. |.++..+.
T Consensus 1 ~~~i~vl~GG~S~E~~vSl~s~~~v~~~l~~~------~~~v~~i~ 40 (347)
T PRK14572 1 MAKIAVFFGGSSTEHSISIRTGCFICATLHTM------GHSVKPIL 40 (347)
T ss_pred CcEEEEEECCCCcchHHHHHhHHHHHHHHhhc------CCEEEEEE
Confidence 4689999666544 13455666666 87776553
No 477
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=24.34 E-value=4.3e+02 Score=22.17 Aligned_cols=52 Identities=13% Similarity=0.185 Sum_probs=29.6
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcc-cHHHHhccCCCEEEE
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDEL-TVAELKRKKPRGVVI 68 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~-~~~~l~~~~~dgiil 68 (203)
+.+|+|+|....+...+.+.|+... +..+.....+.. ....+....+|.|++
T Consensus 3 ~~~ILiVdd~~~~~~~L~~~L~~~~-----~~~vv~~a~~~~~al~~~~~~~~DlVll 55 (354)
T PRK00742 3 KIRVLVVDDSAFMRRLISEILNSDP-----DIEVVGTAPDGLEAREKIKKLNPDVITL 55 (354)
T ss_pred ccEEEEECCCHHHHHHHHHHHhhCC-----CCEEEEEECCHHHHHHHHhhhCCCEEEE
Confidence 3689999987767777777776541 555432222211 112233336888877
No 478
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=24.34 E-value=2.4e+02 Score=21.37 Aligned_cols=45 Identities=18% Similarity=0.316 Sum_probs=26.3
Q ss_pred CceEEEEeCCccc-HHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCCcee-ehh
Q 037843 42 GYHFEVYRNDELT-VAELKRKKPRGVVISPGPGAPQESGISFRTVLELGPTMPLF-CMG 98 (203)
Q Consensus 42 g~~~~v~~~~~~~-~~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~~~~~~Pil-ClG 98 (203)
|+.++.+++. .+ .+++.+ .|.||=-+|.|+. +..+..++|++ |--
T Consensus 62 gl~id~y~f~-psl~e~I~~--AdlVIsHAGaGS~---------letL~l~KPlivVvN 108 (170)
T KOG3349|consen 62 GLTIDGYDFS-PSLTEDIRS--ADLVISHAGAGSC---------LETLRLGKPLIVVVN 108 (170)
T ss_pred CeEEEEEecC-ccHHHHHhh--ccEEEecCCcchH---------HHHHHcCCCEEEEeC
Confidence 7777777664 33 345553 4777766776652 22244567777 643
No 479
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=24.30 E-value=4e+02 Score=21.86 Aligned_cols=81 Identities=20% Similarity=0.281 Sum_probs=41.0
Q ss_pred CcEEEE-eCCchHHHHHHHHHHHhhhhhcCCceEEEE---eCCccc----HHHHhccCCCEEEECCCCCCCCCcchHHHH
Q 037843 13 NPIVVI-DNYDSFTYNLCQYMGELELELSQGYHFEVY---RNDELT----VAELKRKKPRGVVISPGPGAPQESGISFRT 84 (203)
Q Consensus 13 ~~i~ii-d~~~~~~~~l~~~l~~~~~~~~~g~~~~v~---~~~~~~----~~~l~~~~~dgiil~GG~~~~~~~~~~~~~ 84 (203)
+++.+| +..+.+...+.+.+++...+ .|.++... +....+ ..++...++|.|++.+.+. +...+.+.
T Consensus 137 ~~v~~l~~~~~~~g~~~~~~~~~~~~~--~g~~v~~~~~~~~~~~d~~~~v~~i~~~~~d~vi~~~~~~---~~~~~~~~ 211 (344)
T cd06348 137 KRVAVFYAQDDAFSVSETEIFQKALRD--QGLNLVTVQTFQTGDTDFQAQITAVLNSKPDLIVISALAA---DGGNLVRQ 211 (344)
T ss_pred eEEEEEEeCCchHHHHHHHHHHHHHHH--cCCEEEEEEeeCCCCCCHHHHHHHHHhcCCCEEEECCcch---hHHHHHHH
Confidence 578766 33344555555444443211 17776532 222222 2344455799999866432 22233444
Q ss_pred HHHhCCCCcee-ehh
Q 037843 85 VLELGPTMPLF-CMG 98 (203)
Q Consensus 85 i~~~~~~~Pil-ClG 98 (203)
+++.+-+.|++ +.|
T Consensus 212 ~~~~g~~~~~~~~~~ 226 (344)
T cd06348 212 LRELGYNGLIVGGNG 226 (344)
T ss_pred HHHcCCCCceecccc
Confidence 55544456787 544
No 480
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=24.25 E-value=3.4e+02 Score=20.94 Aligned_cols=77 Identities=9% Similarity=0.190 Sum_probs=40.6
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCc-ccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDE-LTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELG 89 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~-~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~ 89 (203)
+.+|+|+|....+...+...++... +..+...-.+. .....+....+|.||+--. .+...+ ...+.++...
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~~-----~~~~v~~a~~~~~al~~~~~~~pdlvllD~~--mp~~~gle~~~~l~~~~ 76 (225)
T PRK10046 4 PLTLLIVEDETPLAEMHAEYIRHIP-----GFSQILLAGNLAQARMMIERFKPGLILLDNY--LPDGRGINLLHELVQAH 76 (225)
T ss_pred cceEEEECCCHHHHHHHHHHHHhCC-----CcEEEEEECCHHHHHHHHHhcCCCEEEEeCC--CCCCcHHHHHHHHHhcC
Confidence 4689999988777777888776541 55433222211 1122333346899888221 122222 2334444433
Q ss_pred CCCcee
Q 037843 90 PTMPLF 95 (203)
Q Consensus 90 ~~~Pil 95 (203)
...|++
T Consensus 77 ~~~~ii 82 (225)
T PRK10046 77 YPGDVV 82 (225)
T ss_pred CCCCEE
Confidence 346777
No 481
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=24.24 E-value=3.4e+02 Score=20.98 Aligned_cols=28 Identities=25% Similarity=0.513 Sum_probs=16.3
Q ss_pred CceEEEEeCCcccHH-------HHhccCCCEEEECC
Q 037843 42 GYHFEVYRNDELTVA-------ELKRKKPRGVVISP 70 (203)
Q Consensus 42 g~~~~v~~~~~~~~~-------~l~~~~~dgiil~G 70 (203)
|+.+.+...+ .+.+ .+...++||||+.+
T Consensus 29 g~~v~~~~~~-~~~~~~~~~~~~~~~~~~dgii~~~ 63 (268)
T cd06323 29 GYELTVLDAQ-NDAAKQLNDIEDLITRGVDAIIINP 63 (268)
T ss_pred CceEEecCCC-CCHHHHHHHHHHHHHcCCCEEEEcC
Confidence 8888776443 1222 12233799999953
No 482
>PF09897 DUF2124: Uncharacterized protein conserved in archaea (DUF2124); InterPro: IPR009183 There are currently no experimental data for members of this group of archaeal proteins, nor do they exhibit features indicative of any function.; PDB: 2R47_D.
Probab=24.10 E-value=19 Score=26.82 Aligned_cols=80 Identities=19% Similarity=0.262 Sum_probs=41.8
Q ss_pred CCCcEEEEeCCc---hHHHHHHHHHHHhhhhhcCCceEEEEeCCcc-------------c-HHHHhccCCCEEEECCCCC
Q 037843 11 DKNPIVVIDNYD---SFTYNLCQYMGELELELSQGYHFEVYRNDEL-------------T-VAELKRKKPRGVVISPGPG 73 (203)
Q Consensus 11 ~~~~i~iid~~~---~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~-------------~-~~~l~~~~~dgiil~GG~~ 73 (203)
...+|+.+-.-+ .|...+.-.+|.. +.+...+|.-+. . .++..+.++|.|||.||-.
T Consensus 18 ~~~kIvf~Gs~GvCtPFaeL~~Y~iR~~------~~~~~FiP~~d~e~a~~l~~~~~Gmq~~~~~~~~~~D~vVlmGGLA 91 (147)
T PF09897_consen 18 DGEKIVFIGSPGVCTPFAELFAYAIRDK------VKEQYFIPDADLEKARKLEVTDIGMQVLGEKKDPHPDVVVLMGGLA 91 (147)
T ss_dssp T-SEEEEEE-TTTTHHHHHHHHHHTTTS--------EEEEEETT-GGG-EEEEEETTEEE-EEEE--S-EEEEEEEGGGG
T ss_pred CCCeEEEeCCCcccccHHHHHHHHHhhh------ccceeecCCCChhhhheeeccCcccccccccCCCCCCEEEEEcccc
Confidence 346787775433 3455566566666 455555553211 1 1111223579999999988
Q ss_pred CCCC---cchHHHHHHHhCCCCcee--eh
Q 037843 74 APQE---SGISFRTVLELGPTMPLF--CM 97 (203)
Q Consensus 74 ~~~~---~~~~~~~i~~~~~~~Pil--Cl 97 (203)
.|.- .+...+++.++.. ..++ |+
T Consensus 92 MP~~~v~~e~v~~li~ki~~-~~iiGiCF 119 (147)
T PF09897_consen 92 MPKSGVTPEDVNELIKKISP-KKIIGICF 119 (147)
T ss_dssp STTTS--HHHHHHHHHHHEE-EEEEEEEE
T ss_pred cCCCCCCHHHHHHHHHHhCc-CCEEEEeh
Confidence 7763 3345667777532 2277 84
No 483
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=24.03 E-value=2.8e+02 Score=24.42 Aligned_cols=31 Identities=16% Similarity=0.247 Sum_probs=24.2
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEe
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYR 49 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~ 49 (203)
.++|+|+..+.+-. .++++|... |+.+.+..
T Consensus 14 ~~~i~v~G~G~sG~-a~a~~L~~~------G~~V~~~D 44 (458)
T PRK01710 14 NKKVAVVGIGVSNI-PLIKFLVKL------GAKVTAFD 44 (458)
T ss_pred CCeEEEEcccHHHH-HHHHHHHHC------CCEEEEEC
Confidence 46899999886544 777888888 88887765
No 484
>cd06276 PBP1_FucR_like Ligand-binding domain of a transcription repressor, FucR, which functions as a molecular sensor of L-fucose availability. Ligand-binding domain of a transcription repressor, FucR, which functions as a molecular sensor of L-fucose availability. FcuR acts as an inducer of fucRRIAK and as a corepressor of another locus that regulates production of fucosylated glycans. FcuR and its close homologs in this group are a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes t
Probab=23.99 E-value=2.2e+02 Score=22.32 Aligned_cols=39 Identities=15% Similarity=0.221 Sum_probs=21.4
Q ss_pred HHHHHHHHhhhhhcCC-ceEEEEeCCcccHHHHh---ccCCCEEEECCC
Q 037843 27 NLCQYMGELELELSQG-YHFEVYRNDELTVAELK---RKKPRGVVISPG 71 (203)
Q Consensus 27 ~l~~~l~~~~~~~~~g-~~~~v~~~~~~~~~~l~---~~~~dgiil~GG 71 (203)
.+.+.+++. | ..+.+...++...+++. ..++||+|+.+.
T Consensus 19 ~i~~~l~~~------g~~~l~~~~~~~~~~~~~~~~~~~~vdGvIi~~~ 61 (247)
T cd06276 19 SFVNTLGKN------AQVDLYFHHYNEDLFKNIISNTKGKYSGYVVMPH 61 (247)
T ss_pred HHHHHHHhc------CcEEEEEEcCchHHHHHHHHHHhcCCCEEEEecC
Confidence 344455555 8 77766554321111221 247899999764
No 485
>cd06286 PBP1_CcpB_like Ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. This group includes the ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. CcpB is 30% identical in sequence to CcpA which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. Like CcpA, the DNA-binding protein CcpB exerts its catabolite-repressing effect by a mechanism dependent on the presence of HPr(Ser-P), the small phosphocarrier proteins of the phosphoenolpyruvate-sugar phosphotransferase system, but with a less significant degree.
Probab=23.95 E-value=2.7e+02 Score=21.59 Aligned_cols=30 Identities=20% Similarity=0.390 Sum_probs=18.1
Q ss_pred CceEEEEeCCccc------HHHHhccCCCEEEECCC
Q 037843 42 GYHFEVYRNDELT------VAELKRKKPRGVVISPG 71 (203)
Q Consensus 42 g~~~~v~~~~~~~------~~~l~~~~~dgiil~GG 71 (203)
|+.+.+....... .+.+...++||||+.+.
T Consensus 29 g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 64 (260)
T cd06286 29 GYKVVLLQTNYDKEKELEYLELLKTKQVDGLILCSR 64 (260)
T ss_pred CCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEeCC
Confidence 8988776543111 11233347899999764
No 486
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=23.94 E-value=3.6e+02 Score=25.84 Aligned_cols=80 Identities=11% Similarity=0.131 Sum_probs=45.7
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhc-cCCCEEEECCCCCCCCCcc-hHHHHHHHhC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKR-KKPRGVVISPGPGAPQESG-ISFRTVLELG 89 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~-~~~dgiil~GG~~~~~~~~-~~~~~i~~~~ 89 (203)
..+|+|+|-...+...+...++.. |+.+..........+.+.. ..||.|++-= ..|...+ ...+.+++..
T Consensus 681 ~~~vLivdD~~~~~~~l~~~L~~~------g~~v~~a~~~~~al~~~~~~~~~Dlvl~D~--~mp~~~G~~~~~~lr~~~ 752 (914)
T PRK11466 681 GLRLLLIEDNPLTQRITAEMLNTS------GAQVVAVGNAAQALETLQNSEPFAAALVDF--DLPDYDGITLARQLAQQY 752 (914)
T ss_pred CcceEEEeCCHHHHHHHHHHHHhc------CCceEEeCCHHHHHHHHHcCCCCCEEEEeC--CCCCCCHHHHHHHHHhhC
Confidence 457999998777777788888887 8887654321111222322 2478888721 1222222 2344555544
Q ss_pred CCCcee-ehhH
Q 037843 90 PTMPLF-CMGL 99 (203)
Q Consensus 90 ~~~Pil-ClG~ 99 (203)
...|++ +-++
T Consensus 753 ~~~~ii~~t~~ 763 (914)
T PRK11466 753 PSLVLIGFSAH 763 (914)
T ss_pred CCCCEEEEeCC
Confidence 568888 5443
No 487
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=23.73 E-value=2.2e+02 Score=22.55 Aligned_cols=53 Identities=17% Similarity=0.167 Sum_probs=32.5
Q ss_pred CcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCC
Q 037843 13 NPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGP 72 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~ 72 (203)
++++|+-.+ .+...+.+.|.+. |.++..+..+....++.....++..++.|-.
T Consensus 1 m~iiIiG~G-~vG~~va~~L~~~------g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~ 53 (225)
T COG0569 1 MKIIIIGAG-RVGRSVARELSEE------GHNVVLIDRDEERVEEFLADELDTHVVIGDA 53 (225)
T ss_pred CEEEEECCc-HHHHHHHHHHHhC------CCceEEEEcCHHHHHHHhhhhcceEEEEecC
Confidence 356677665 5778888888887 8888887655333333222135665554543
No 488
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=23.72 E-value=2.3e+02 Score=23.67 Aligned_cols=65 Identities=17% Similarity=0.334 Sum_probs=38.0
Q ss_pred CCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCC--cc-hHHHHHHH
Q 037843 11 DKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQE--SG-ISFRTVLE 87 (203)
Q Consensus 11 ~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~--~~-~~~~~i~~ 87 (203)
..-+|++|..-....+.+.|+|..+. ++ | + ++ ++.|||+ |.+..... .. .+.+++++
T Consensus 217 ~~g~ILflEdv~e~~~~idR~L~qL~--~~-G----~----------f~--~~~Gii~-G~f~~~~~~~~~~~~~~il~~ 276 (308)
T cd07062 217 LEGKILFLETSELSPATVERALRQLK--LA-G----V----------FD--KISGIIF-GRPQDEEDKGTEETYEDILLE 276 (308)
T ss_pred ccCCEEEEEcCCCCHHHHHHHHHHHH--hc-C----C----------cc--cCCEEEE-eCCCCCCCccchHHHHHHHHH
Confidence 34578888655556778888887761 00 1 1 22 4689999 55543221 11 24556666
Q ss_pred h--CCCCcee
Q 037843 88 L--GPTMPLF 95 (203)
Q Consensus 88 ~--~~~~Pil 95 (203)
+ ..++||+
T Consensus 277 ~~~~~~iPv~ 286 (308)
T cd07062 277 VLGDLDIPIV 286 (308)
T ss_pred hhCCCCCcEE
Confidence 4 3479999
No 489
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=23.67 E-value=1.2e+02 Score=21.25 Aligned_cols=65 Identities=17% Similarity=0.161 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhc-cCCCEEEECCCCCCCCCcchHHHHHHHhCCCCcee
Q 037843 25 TYNLCQYMGELELELSQGYHFEVYRNDELTVAELKR-KKPRGVVISPGPGAPQESGISFRTVLELGPTMPLF 95 (203)
Q Consensus 25 ~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~-~~~dgiil~GG~~~~~~~~~~~~~i~~~~~~~Pil 95 (203)
...+..+|+.. |.++......+.-..-+.. .++.+||++=-...-.....+.+.+++.+.++|||
T Consensus 6 ~~~l~~~L~~~------~~~vv~~~~~dd~~~~i~~~~~i~avvi~~d~~~~~~~~~ll~~i~~~~~~iPVF 71 (115)
T PF03709_consen 6 SRELAEALEQR------GREVVDADSTDDALAIIESFTDIAAVVISWDGEEEDEAQELLDKIRERNFGIPVF 71 (115)
T ss_dssp HHHHHHHHHHT------TTEEEEESSHHHHHHHHHCTTTEEEEEEECHHHHHHHHHHHHHHHHHHSTT-EEE
T ss_pred HHHHHHHHHHC------CCEEEEeCChHHHHHHHHhCCCeeEEEEEcccccchhHHHHHHHHHHhCCCCCEE
Confidence 45566677766 8887665321000111222 36789999421000001123456677778889999
No 490
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=23.60 E-value=4e+02 Score=21.60 Aligned_cols=79 Identities=14% Similarity=0.111 Sum_probs=39.1
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEE---EeCCccc----HHHHhccCCCEEEECCCCCCCCCcchHHHH
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEV---YRNDELT----VAELKRKKPRGVVISPGPGAPQESGISFRT 84 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v---~~~~~~~----~~~l~~~~~dgiil~GG~~~~~~~~~~~~~ 84 (203)
-++|.+|-..+.+...+.+.+++...+. |..+.- ++....+ ...+...++|.|++.+.+. +...+.+.
T Consensus 137 ~~~vail~~~~~~g~~~~~~~~~~~~~~--G~~vv~~~~~~~~~~d~~~~v~~l~~~~pd~v~~~~~~~---~~~~~~~~ 211 (312)
T cd06346 137 YKSVATTYINNDYGVGLADAFTKAFEAL--GGTVTNVVAHEEGKSSYSSEVAAAAAGGPDALVVIGYPE---TGSGILRS 211 (312)
T ss_pred CCeEEEEEccCchhhHHHHHHHHHHHHc--CCEEEEEEeeCCCCCCHHHHHHHHHhcCCCEEEEecccc---hHHHHHHH
Confidence 3678887544556555444443321111 776542 2222122 2344555899999865422 22223344
Q ss_pred HHHhCCCCcee
Q 037843 85 VLELGPTMPLF 95 (203)
Q Consensus 85 i~~~~~~~Pil 95 (203)
+++.+-+.|++
T Consensus 212 ~~~~G~~~~~~ 222 (312)
T cd06346 212 AYEQGLFDKFL 222 (312)
T ss_pred HHHcCCCCceE
Confidence 44444456777
No 491
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=23.59 E-value=3e+02 Score=22.53 Aligned_cols=59 Identities=7% Similarity=-0.050 Sum_probs=35.2
Q ss_pred cEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHh-CCCC
Q 037843 14 PIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGISFRTVLEL-GPTM 92 (203)
Q Consensus 14 ~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~~-~~~~ 92 (203)
|..|+.+.+.-...+.+.+++... +.. . ...++|.+|.-||.|. +...++.+ ..++
T Consensus 2 ~~~i~~~~~~~s~~~~~~l~~~~~----~~~--------~-----~~~~~D~vi~iGGDGT------~L~a~~~~~~~~i 58 (259)
T PRK00561 2 KYKIFASTTPQTEPVLPKLKKVLK----KKL--------A-----VEDGADYLFVLGGDGF------FVSTAANYNCAGC 58 (259)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHh----hCC--------C-----ccCCCCEEEEECCcHH------HHHHHHHhcCCCC
Confidence 578888887766667777766521 110 0 0114789999899663 33444443 3567
Q ss_pred cee
Q 037843 93 PLF 95 (203)
Q Consensus 93 Pil 95 (203)
|||
T Consensus 59 Pil 61 (259)
T PRK00561 59 KVV 61 (259)
T ss_pred cEE
Confidence 777
No 492
>PRK09701 D-allose transporter subunit; Provisional
Probab=23.37 E-value=4.1e+02 Score=21.63 Aligned_cols=58 Identities=14% Similarity=0.260 Sum_probs=28.9
Q ss_pred CCcEEEE--eCCchHHHHHHHHHHHhhhhhcCCceEEEEeCC-cccH-------HHHhccCCCEEEECCC
Q 037843 12 KNPIVVI--DNYDSFTYNLCQYMGELELELSQGYHFEVYRND-ELTV-------AELKRKKPRGVVISPG 71 (203)
Q Consensus 12 ~~~i~ii--d~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~-~~~~-------~~l~~~~~dgiil~GG 71 (203)
...|++| +..+.|...+.+.+++... ..|+.+.++... ..+. +.+...++|||||.+.
T Consensus 24 ~~~Igvi~~~~~~~f~~~~~~gi~~~a~--~~g~~v~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~ 91 (311)
T PRK09701 24 AAEYAVVLKTLSNPFWVDMKKGIEDEAK--TLGVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPL 91 (311)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHH--HcCCeEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 4567666 3334454444444433311 128888765211 1111 1222337999999764
No 493
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=23.24 E-value=3.1e+02 Score=23.11 Aligned_cols=52 Identities=13% Similarity=0.066 Sum_probs=28.3
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhc-cCCCEEEECC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKR-KKPRGVVISP 70 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~-~~~dgiil~G 70 (203)
|++|++..-.+.-...+.+++++. ++.+...+.. .+.+.+.. .++|++|+.+
T Consensus 1 ~~~i~~~~~~~~e~~~~~~~~~~~------~~~~~~~~~~-~~~~~~~~~~~~d~ii~~~ 53 (330)
T PRK12480 1 MTKIMFFGTRDYEKEMALNWGKKN------NVEVTTSKEL-LSSATVDQLKDYDGVTTMQ 53 (330)
T ss_pred CcEEEEEeCcHHHHHHHHHHHHhc------CeEEEEcCCC-CCHHHHHHhCCCCEEEEec
Confidence 367777776655555666667666 6655543321 23332222 2567777643
No 494
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=23.22 E-value=3e+02 Score=21.44 Aligned_cols=30 Identities=13% Similarity=0.309 Sum_probs=18.5
Q ss_pred CceEEEEeCCccc--H----HHHhccCCCEEEECCC
Q 037843 42 GYHFEVYRNDELT--V----AELKRKKPRGVVISPG 71 (203)
Q Consensus 42 g~~~~v~~~~~~~--~----~~l~~~~~dgiil~GG 71 (203)
|+.+.+...+... . +.+...++||||+.+.
T Consensus 29 g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 64 (264)
T cd06274 29 GYQLLIACSDDDPETERETVETLIARQVDALIVAGS 64 (264)
T ss_pred CCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 8988887653211 1 1223347999999765
No 495
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=23.20 E-value=3.6e+02 Score=22.48 Aligned_cols=52 Identities=12% Similarity=0.103 Sum_probs=29.4
Q ss_pred CCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECC
Q 037843 11 DKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISP 70 (203)
Q Consensus 11 ~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~G 70 (203)
.+.+++.+..+. +..+.+.+++. |+.+...-.............+|+|++.|
T Consensus 86 ~~v~~v~~~~g~--p~~~i~~lk~~------g~~v~~~v~s~~~a~~a~~~GaD~Ivv~g 137 (307)
T TIGR03151 86 EKVPVVTTGAGN--PGKYIPRLKEN------GVKVIPVVASVALAKRMEKAGADAVIAEG 137 (307)
T ss_pred CCCCEEEEcCCC--cHHHHHHHHHc------CCEEEEEcCCHHHHHHHHHcCCCEEEEEC
Confidence 356666665443 44477788887 87764321111111233345799999966
No 496
>TIGR03521 GldG gliding-associated putative ABC transporter substrate-binding component GldG. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=23.20 E-value=2.5e+02 Score=25.67 Aligned_cols=80 Identities=15% Similarity=0.085 Sum_probs=39.0
Q ss_pred ccCCCCCcEEEEeCCchHH----HHHHHHHHHhhhhhcCCceEEEEeCCc--ccHHHHhc--cCCCEEEECCCCCCCCCc
Q 037843 7 LSKNDKNPIVVIDNYDSFT----YNLCQYMGELELELSQGYHFEVYRNDE--LTVAELKR--KKPRGVVISPGPGAPQES 78 (203)
Q Consensus 7 ~~~~~~~~i~iid~~~~~~----~~l~~~l~~~~~~~~~g~~~~v~~~~~--~~~~~l~~--~~~dgiil~GG~~~~~~~ 78 (203)
+.+..+++|.++..++.-. +.+.+.|+ . +.++..+..+. ...+++.+ .++|.+|| .||......
T Consensus 178 v~~~~~~~V~~l~ghGE~~~~~~~~l~~~L~-~------~y~v~~l~l~~~~~~~~~ip~~l~d~d~LvI-~~P~~~ls~ 249 (552)
T TIGR03521 178 LINPREKRIAVLKGNGELADLQIADLVSTLK-E------YYFIAPFTLDSVAANPAKTLADLKKFDLIVI-AKPTEAFSE 249 (552)
T ss_pred HhCccCceEEEEeCCCCCChHHHHHHHHHHH-h------cCceeeecchhcccCcccccccccCcCEEEE-eCCCccCCH
Confidence 3344568899997664321 33444454 2 56665544321 01112221 16799999 444422222
Q ss_pred chHHHHHHH-hCCCCcee
Q 037843 79 GISFRTVLE-LGPTMPLF 95 (203)
Q Consensus 79 ~~~~~~i~~-~~~~~Pil 95 (203)
.. ...|.+ +.++-++|
T Consensus 250 ~e-~~~Ldqfl~~GG~ll 266 (552)
T TIGR03521 250 RE-KYILDQYIMNGGKAL 266 (552)
T ss_pred HH-HHHHHHHHHcCCeEE
Confidence 22 334444 34555666
No 497
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=23.03 E-value=3.9e+02 Score=22.01 Aligned_cols=52 Identities=13% Similarity=0.218 Sum_probs=32.9
Q ss_pred CCCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCC-cccHHHHhccCCCEEEEC
Q 037843 10 NDKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRND-ELTVAELKRKKPRGVVIS 69 (203)
Q Consensus 10 ~~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~-~~~~~~l~~~~~dgiil~ 69 (203)
+.+++|.||-.+ ..-..+.+.+... |.+|.++..+ ..++++... +.|.||++
T Consensus 2 ~~~m~I~iiG~G-~~G~~lA~~l~~~------G~~V~~~~r~~~~~~~~~~~-~advvi~~ 54 (308)
T PRK14619 2 TQPKTIAILGAG-AWGSTLAGLASAN------GHRVRVWSRRSGLSLAAVLA-DADVIVSA 54 (308)
T ss_pred CCCCEEEEECcc-HHHHHHHHHHHHC------CCEEEEEeCCCCCCHHHHHh-cCCEEEEE
Confidence 345689999765 3456677777777 8888776432 234444432 56877773
No 498
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=23.00 E-value=3.6e+02 Score=20.83 Aligned_cols=29 Identities=17% Similarity=0.401 Sum_probs=17.1
Q ss_pred CceEEEEeCCcccH-------HHHhccCCCEEEECCC
Q 037843 42 GYHFEVYRNDELTV-------AELKRKKPRGVVISPG 71 (203)
Q Consensus 42 g~~~~v~~~~~~~~-------~~l~~~~~dgiil~GG 71 (203)
|+.+.+.... .+. +.+...++||||+.+.
T Consensus 29 g~~~~~~~~~-~~~~~~~~~i~~~~~~~vdgiii~~~ 64 (268)
T cd06289 29 GYTVFLANSG-EDVERQEQLLSTMLEHGVAGIILCPA 64 (268)
T ss_pred CCeEEEecCC-CChHHHHHHHHHHHHcCCCEEEEeCC
Confidence 8887665432 112 2233347899999764
No 499
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=22.91 E-value=86 Score=29.55 Aligned_cols=51 Identities=18% Similarity=0.257 Sum_probs=31.8
Q ss_pred CceEEeecccceeecCCCCCCCeEEEEEcC----------CCcEEEEEeCCCCcEEEEcCCCC
Q 037843 141 NPFTAGRYHGLVIEKDSFRSDELEVTAWTE----------DGLIMAARHKKYKHLHGVQFHPE 193 (203)
Q Consensus 141 ~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~----------~~~v~a~~~~~~~~i~gvQfHPE 193 (203)
.++..+.-|...|..-++-..+|.+.+.-+ +.....|.|.+ ++-++||||-
T Consensus 360 kP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~Hnd--fVTcVaFnPv 420 (712)
T KOG0283|consen 360 KPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFSHND--FVTCVAFNPV 420 (712)
T ss_pred cchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEecCC--eeEEEEeccc
Confidence 345556678776654333334554444321 23467889998 7999999994
No 500
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=22.85 E-value=3.6e+02 Score=22.25 Aligned_cols=34 Identities=12% Similarity=0.108 Sum_probs=26.6
Q ss_pred CCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCC
Q 037843 11 DKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRND 51 (203)
Q Consensus 11 ~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~ 51 (203)
.+++|+|+-.+ ..-.++.+.+++. |..+.++..+
T Consensus 2 ~~~~v~IvG~G-liG~s~a~~l~~~------g~~v~i~g~d 35 (279)
T COG0287 2 ASMKVGIVGLG-LMGGSLARALKEA------GLVVRIIGRD 35 (279)
T ss_pred CCcEEEEECCc-hHHHHHHHHHHHc------CCeEEEEeec
Confidence 35678888765 4678899999999 9998887765
Done!