Query 037843
Match_columns 203
No_of_seqs 191 out of 1627
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 07:47:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037843.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037843hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qdl_B Protein (anthranilate s 100.0 9.2E-38 3.1E-42 243.7 20.6 176 13-200 2-184 (195)
2 1i1q_B Anthranilate synthase c 100.0 4.5E-36 1.5E-40 233.5 17.8 172 13-200 1-178 (192)
3 1wl8_A GMP synthase [glutamine 100.0 1.3E-35 4.5E-40 230.2 20.2 171 14-200 2-175 (189)
4 3tqi_A GMP synthase [glutamine 100.0 2.9E-36 9.9E-41 266.4 13.5 179 7-201 3-194 (527)
5 2a9v_A GMP synthase; structura 100.0 5.4E-36 1.9E-40 236.5 13.6 171 11-200 12-188 (212)
6 2vpi_A GMP synthase; guanine m 100.0 9.6E-36 3.3E-40 236.0 14.7 174 10-200 22-198 (218)
7 3uow_A GMP synthetase; structu 100.0 1.3E-34 4.6E-39 256.9 17.2 179 11-201 6-219 (556)
8 1gpm_A GMP synthetase, XMP ami 100.0 2.3E-34 7.9E-39 254.2 16.7 172 13-200 8-190 (525)
9 2ywb_A GMP synthase [glutamine 100.0 1.2E-34 4.2E-39 254.9 14.4 170 14-200 1-173 (503)
10 3m3p_A Glutamine amido transfe 100.0 9.4E-33 3.2E-37 222.7 14.0 169 12-196 3-181 (250)
11 2vxo_A GMP synthase [glutamine 100.0 2.1E-32 7.3E-37 247.5 14.2 171 12-200 29-203 (697)
12 1a9x_B Carbamoyl phosphate syn 100.0 7.7E-31 2.6E-35 222.1 19.5 167 12-199 190-360 (379)
13 3r75_A Anthranilate/para-amino 100.0 1.7E-31 5.9E-36 239.8 15.3 169 12-201 446-623 (645)
14 3l7n_A Putative uncharacterize 100.0 5E-31 1.7E-35 211.3 15.1 168 13-195 1-183 (236)
15 1o1y_A Conserved hypothetical 100.0 2.5E-30 8.7E-35 207.5 14.2 167 12-196 12-190 (239)
16 3fij_A LIN1909 protein; 11172J 100.0 3.4E-29 1.2E-33 202.6 18.4 158 27-197 32-224 (254)
17 4gud_A Imidazole glycerol phos 100.0 9.4E-30 3.2E-34 200.3 8.9 161 11-195 1-189 (211)
18 2w7t_A CTP synthetase, putativ 100.0 8.6E-28 2.9E-32 196.3 12.8 176 13-199 9-241 (273)
19 1l9x_A Gamma-glutamyl hydrolas 99.9 8.1E-28 2.8E-32 200.1 10.7 181 12-201 30-251 (315)
20 3d54_D Phosphoribosylformylgly 99.9 6.6E-27 2.3E-31 184.0 14.6 167 11-197 1-192 (213)
21 2ywj_A Glutamine amidotransfer 99.9 2.3E-27 8E-32 183.2 10.5 157 13-196 1-170 (186)
22 2v4u_A CTP synthase 2; pyrimid 99.9 2.5E-26 8.5E-31 189.0 9.9 181 12-199 25-261 (289)
23 1ka9_H Imidazole glycerol phos 99.9 2.8E-26 9.5E-31 179.2 8.9 158 11-196 1-183 (200)
24 2nv0_A Glutamine amidotransfer 99.9 1.3E-25 4.6E-30 174.7 11.0 161 12-197 1-176 (196)
25 1vco_A CTP synthetase; tetrame 99.9 7.4E-26 2.5E-30 199.0 8.6 174 14-199 309-530 (550)
26 1gpw_B Amidotransferase HISH; 99.9 4.2E-25 1.4E-29 172.5 9.1 158 13-195 1-182 (201)
27 1s1m_A CTP synthase; CTP synth 99.9 6.7E-25 2.3E-29 192.8 7.6 176 17-199 301-523 (545)
28 3nva_A CTP synthase; rossman f 99.9 1.3E-24 4.5E-29 188.6 9.1 175 12-199 293-519 (535)
29 1q7r_A Predicted amidotransfer 99.9 1.9E-24 6.5E-29 171.1 9.1 160 12-196 23-197 (219)
30 2iss_D Glutamine amidotransfer 99.9 1.7E-23 5.8E-28 164.4 10.3 162 11-197 19-196 (208)
31 2ywd_A Glutamine amidotransfer 99.9 9.9E-24 3.4E-28 163.2 8.3 160 11-196 1-177 (191)
32 2vdj_A Homoserine O-succinyltr 99.9 6.7E-22 2.3E-26 162.7 13.9 174 12-197 35-241 (301)
33 1jvn_A Glutamine, bifunctional 99.9 7.2E-24 2.5E-28 188.2 1.5 166 12-196 4-201 (555)
34 2h2w_A Homoserine O-succinyltr 99.9 1E-21 3.6E-26 162.0 13.3 176 12-197 47-252 (312)
35 2abw_A PDX2 protein, glutamina 99.8 2.2E-20 7.5E-25 148.4 8.7 169 13-197 4-202 (227)
36 3ugj_A Phosphoribosylformylgly 99.1 5.1E-10 1.7E-14 107.0 10.2 179 11-200 1046-1277(1303)
37 1fy2_A Aspartyl dipeptidase; s 98.4 1.2E-07 4E-12 75.0 4.2 85 12-106 31-130 (229)
38 3l4e_A Uncharacterized peptida 98.4 2.8E-07 9.7E-12 71.7 4.4 83 12-104 27-128 (206)
39 4hcj_A THIJ/PFPI domain protei 97.9 1.5E-05 5E-10 60.5 6.0 91 8-105 4-117 (177)
40 1oi4_A Hypothetical protein YH 97.9 2.9E-05 9.8E-10 59.4 7.0 89 11-105 22-134 (193)
41 1vhq_A Enhancing lycopene bios 97.6 0.00011 3.8E-09 57.7 6.3 46 62-107 90-151 (232)
42 2rk3_A Protein DJ-1; parkinson 97.5 0.00022 7.5E-09 54.5 6.2 88 12-105 3-115 (197)
43 3l18_A Intracellular protease 97.5 0.00013 4.6E-09 54.1 4.9 88 12-105 2-111 (168)
44 2ab0_A YAJL; DJ-1/THIJ superfa 97.4 0.00011 3.9E-09 56.6 4.5 88 12-105 2-116 (205)
45 3l3b_A ES1 family protein; ssg 97.4 0.00021 7.1E-09 56.8 6.0 45 62-106 107-168 (242)
46 1u9c_A APC35852; structural ge 97.3 0.00032 1.1E-08 54.5 6.1 44 62-105 89-138 (224)
47 3ot1_A 4-methyl-5(B-hydroxyeth 97.2 0.00012 4.1E-09 56.6 2.5 93 7-105 4-121 (208)
48 4e08_A DJ-1 beta; flavodoxin-l 97.2 0.00039 1.3E-08 52.8 5.2 88 11-105 4-116 (190)
49 2vrn_A Protease I, DR1199; cys 97.1 0.00068 2.3E-08 51.3 5.7 87 12-105 9-124 (190)
50 3gra_A Transcriptional regulat 97.0 0.0012 4E-08 50.8 6.3 98 8-105 1-117 (202)
51 3ej6_A Catalase-3; heme, hydro 97.0 0.0018 6.3E-08 58.2 7.9 88 12-105 537-646 (688)
52 3cne_A Putative protease I; st 97.0 0.0014 4.8E-08 48.8 6.0 44 62-105 66-120 (175)
53 2fex_A Conserved hypothetical 96.8 0.0014 4.7E-08 49.6 5.0 87 12-105 1-110 (188)
54 3efe_A THIJ/PFPI family protei 96.8 0.0023 7.7E-08 49.5 6.2 94 12-105 5-121 (212)
55 3f5d_A Protein YDEA; unknow pr 96.7 0.0036 1.2E-07 48.2 6.6 44 62-105 63-109 (206)
56 3n7t_A Macrophage binding prot 96.7 0.0021 7.2E-08 51.0 5.1 44 62-105 105-154 (247)
57 3uk7_A Class I glutamine amido 96.6 0.0023 7.9E-08 54.0 5.4 90 10-105 203-330 (396)
58 3er6_A Putative transcriptiona 96.5 0.0032 1.1E-07 48.5 5.3 44 62-105 74-124 (209)
59 3uk7_A Class I glutamine amido 96.4 0.0036 1.2E-07 52.8 5.0 87 12-105 12-137 (396)
60 3ttv_A Catalase HPII; heme ori 96.3 0.0055 1.9E-07 55.6 6.0 86 12-105 600-708 (753)
61 3noq_A THIJ/PFPI family protei 96.2 0.0099 3.4E-07 46.5 6.2 88 10-105 3-113 (231)
62 3fse_A Two-domain protein cont 96.1 0.0064 2.2E-07 51.0 5.2 88 11-105 9-121 (365)
63 2iuf_A Catalase; oxidoreductas 96.1 0.0092 3.2E-07 53.8 6.4 88 12-105 529-648 (688)
64 3kkl_A Probable chaperone prot 95.9 0.0088 3E-07 47.3 4.7 44 62-105 98-147 (244)
65 1rw7_A YDR533CP; alpha-beta sa 95.8 0.0063 2.2E-07 47.9 3.7 44 62-105 98-147 (243)
66 4gdh_A DJ-1, uncharacterized p 95.4 0.019 6.6E-07 43.5 4.8 43 62-105 73-122 (194)
67 1sy7_A Catalase 1; heme oxidat 95.2 0.017 5.8E-07 52.5 4.6 89 13-107 535-646 (715)
68 3bhn_A THIJ/PFPI domain protei 94.9 0.016 5.6E-07 45.5 3.3 91 5-105 13-128 (236)
69 3ewn_A THIJ/PFPI family protei 94.6 0.085 2.9E-06 41.8 6.8 44 62-105 84-133 (253)
70 1n57_A Chaperone HSP31, protei 94.6 0.044 1.5E-06 44.4 5.1 46 61-106 144-195 (291)
71 2rdm_A Response regulator rece 94.5 0.25 8.4E-06 33.6 8.4 77 11-95 4-83 (132)
72 3eod_A Protein HNR; response r 94.4 0.29 9.9E-06 33.2 8.5 76 12-95 7-83 (130)
73 3grc_A Sensor protein, kinase; 94.3 0.22 7.5E-06 34.4 7.8 80 12-99 6-89 (140)
74 3gt7_A Sensor protein; structu 94.2 0.18 6.3E-06 35.7 7.4 79 9-95 4-85 (154)
75 3hdg_A Uncharacterized protein 94.2 0.19 6.4E-06 34.6 7.2 78 10-95 5-83 (137)
76 3cg4_A Response regulator rece 94.0 0.2 6.9E-06 34.6 7.0 78 10-95 5-85 (142)
77 2qxy_A Response regulator; reg 93.8 0.15 5.3E-06 35.3 6.1 76 11-95 3-79 (142)
78 3h5i_A Response regulator/sens 93.7 0.33 1.1E-05 33.6 7.8 78 9-95 2-82 (140)
79 3i42_A Response regulator rece 93.5 0.24 8.4E-06 33.5 6.7 76 12-95 3-81 (127)
80 3kht_A Response regulator; PSI 93.5 0.21 7.3E-06 34.7 6.5 80 8-95 1-85 (144)
81 3jte_A Response regulator rece 93.5 0.39 1.3E-05 33.2 7.8 76 12-95 3-81 (143)
82 2pbq_A Molybdenum cofactor bio 93.4 0.26 9E-06 36.8 7.1 73 8-88 1-93 (178)
83 3a10_A Response regulator; pho 93.4 0.55 1.9E-05 31.0 8.2 76 12-95 1-77 (116)
84 2zay_A Response regulator rece 93.3 0.27 9.3E-06 34.2 6.8 77 11-95 7-86 (147)
85 2gkg_A Response regulator homo 93.2 0.25 8.4E-06 33.1 6.2 76 13-96 6-86 (127)
86 3cz5_A Two-component response 93.2 0.35 1.2E-05 34.0 7.3 79 9-95 2-83 (153)
87 3hv2_A Response regulator/HD d 93.0 0.33 1.1E-05 34.2 6.9 76 12-95 14-90 (153)
88 4e7p_A Response regulator; DNA 93.0 0.4 1.4E-05 33.6 7.3 78 10-95 18-98 (150)
89 2gwr_A DNA-binding response re 92.8 0.24 8.3E-06 37.9 6.4 79 8-95 1-80 (238)
90 3hdv_A Response regulator; PSI 92.8 0.31 1.1E-05 33.4 6.4 77 11-95 6-85 (136)
91 3kbq_A Protein TA0487; structu 92.7 0.63 2.1E-05 34.6 8.1 89 12-107 3-107 (172)
92 3en0_A Cyanophycinase; serine 92.6 0.11 3.8E-06 42.0 4.3 86 11-104 55-160 (291)
93 2rjn_A Response regulator rece 92.6 0.55 1.9E-05 32.9 7.7 76 12-95 7-83 (154)
94 3cnb_A DNA-binding response re 92.6 0.4 1.4E-05 32.9 6.7 77 11-95 7-88 (143)
95 2j48_A Two-component sensor ki 92.5 0.52 1.8E-05 30.8 7.0 75 13-95 2-79 (119)
96 3snk_A Response regulator CHEY 92.4 0.18 6E-06 34.8 4.7 77 11-95 13-91 (135)
97 3hzh_A Chemotaxis response reg 92.3 0.44 1.5E-05 33.8 6.8 76 12-95 36-115 (157)
98 2pln_A HP1043, response regula 92.3 0.58 2E-05 32.0 7.2 72 11-95 17-90 (137)
99 3lte_A Response regulator; str 92.2 0.27 9.1E-06 33.5 5.3 53 10-68 4-56 (132)
100 3rht_A (gatase1)-like protein; 92.1 0.21 7.2E-06 39.7 5.1 51 11-69 3-57 (259)
101 3cg0_A Response regulator rece 92.0 0.68 2.3E-05 31.6 7.4 75 12-95 9-86 (140)
102 1k66_A Phytochrome response re 92.0 0.65 2.2E-05 32.0 7.3 80 8-95 2-96 (149)
103 3f6c_A Positive transcription 91.9 0.9 3.1E-05 30.8 7.9 75 13-95 2-78 (134)
104 1mvo_A PHOP response regulator 91.8 0.75 2.6E-05 31.3 7.4 77 11-95 2-79 (136)
105 2qr3_A Two-component system re 91.8 0.38 1.3E-05 33.0 5.8 78 12-95 3-84 (140)
106 1kgs_A DRRD, DNA binding respo 91.6 0.72 2.5E-05 34.6 7.7 77 11-95 1-78 (225)
107 1qkk_A DCTD, C4-dicarboxylate 91.4 0.58 2E-05 32.9 6.6 76 12-95 3-79 (155)
108 1srr_A SPO0F, sporulation resp 91.4 0.76 2.6E-05 30.7 6.9 76 12-95 3-79 (124)
109 3rfq_A Pterin-4-alpha-carbinol 91.2 0.88 3E-05 34.2 7.5 70 12-88 30-114 (185)
110 3crn_A Response regulator rece 91.1 1.2 4E-05 30.3 7.8 76 12-95 3-79 (132)
111 3ff4_A Uncharacterized protein 90.8 2.8 9.6E-05 29.1 9.4 33 12-50 4-39 (122)
112 3f6p_A Transcriptional regulat 90.7 0.6 2.1E-05 31.3 5.8 75 12-95 2-77 (120)
113 3gl9_A Response regulator; bet 90.7 0.53 1.8E-05 31.7 5.6 76 12-95 2-80 (122)
114 2g2c_A Putative molybdenum cof 90.7 0.28 9.6E-06 36.1 4.3 71 9-87 2-93 (167)
115 3pzy_A MOG; ssgcid, seattle st 90.4 0.42 1.4E-05 35.2 5.0 69 12-88 7-91 (164)
116 2ark_A Flavodoxin; FMN, struct 90.3 1.4 4.7E-05 32.6 8.0 80 12-95 4-92 (188)
117 3cfy_A Putative LUXO repressor 90.0 0.86 3E-05 31.3 6.3 75 13-95 5-80 (137)
118 3nhm_A Response regulator; pro 90.0 1.3 4.6E-05 29.8 7.2 75 12-95 4-81 (133)
119 1tmy_A CHEY protein, TMY; chem 90.0 1 3.5E-05 29.8 6.5 76 12-95 2-79 (120)
120 2is8_A Molybdopterin biosynthe 89.9 0.45 1.6E-05 34.9 4.8 68 12-87 1-86 (164)
121 2lpm_A Two-component response 89.8 0.23 8E-06 34.7 3.1 81 8-98 4-87 (123)
122 2b4a_A BH3024; flavodoxin-like 89.6 1 3.5E-05 30.7 6.4 76 12-95 15-92 (138)
123 2qvg_A Two component response 89.6 1 3.6E-05 30.8 6.4 76 12-95 7-93 (143)
124 2fz5_A Flavodoxin; alpha/beta 89.5 3.7 0.00013 28.1 10.0 77 14-95 1-84 (137)
125 2pl1_A Transcriptional regulat 89.3 2.5 8.5E-05 27.8 8.1 74 14-95 2-76 (121)
126 1k68_A Phytochrome response re 89.3 1.7 5.6E-05 29.4 7.3 76 12-95 2-89 (140)
127 1y5e_A Molybdenum cofactor bio 89.3 1.1 3.8E-05 32.9 6.7 69 12-87 13-96 (169)
128 3eq2_A Probable two-component 89.3 1.1 3.9E-05 37.0 7.5 80 8-95 1-81 (394)
129 3rqi_A Response regulator prot 88.9 1.3 4.4E-05 32.3 6.8 76 12-95 7-83 (184)
130 1dbw_A Transcriptional regulat 88.6 2.3 8E-05 28.3 7.6 76 12-95 3-79 (126)
131 4dad_A Putative pilus assembly 88.6 0.81 2.8E-05 31.6 5.3 76 12-95 20-99 (146)
132 3mgk_A Intracellular protease/ 88.6 0.12 4.1E-06 39.6 0.8 44 62-105 65-113 (211)
133 3fni_A Putative diflavin flavo 88.3 1.4 4.7E-05 31.9 6.5 59 11-72 3-65 (159)
134 3r0j_A Possible two component 88.2 1.9 6.4E-05 33.1 7.6 76 12-95 23-99 (250)
135 3lua_A Response regulator rece 88.0 0.68 2.3E-05 31.8 4.5 76 12-95 4-85 (140)
136 3ilh_A Two component response 88.0 1.8 6.2E-05 29.6 6.8 76 12-95 9-96 (146)
137 3to5_A CHEY homolog; alpha(5)b 87.7 0.97 3.3E-05 31.9 5.2 80 7-95 8-91 (134)
138 2jba_A Phosphate regulon trans 87.4 0.69 2.3E-05 31.0 4.2 73 11-95 1-80 (127)
139 2pjk_A 178AA long hypothetical 87.3 1.5 5.1E-05 32.6 6.2 69 12-87 15-105 (178)
140 1zgz_A Torcad operon transcrip 87.2 1.3 4.4E-05 29.4 5.5 75 12-95 2-77 (122)
141 1mkz_A Molybdenum cofactor bio 87.2 1.2 4.1E-05 32.9 5.6 69 12-87 10-93 (172)
142 1ys7_A Transcriptional regulat 87.1 2.5 8.6E-05 31.7 7.7 76 12-95 7-83 (233)
143 2a9o_A Response regulator; ess 86.9 1.1 3.7E-05 29.5 5.0 75 12-95 1-76 (120)
144 1xhf_A DYE resistance, aerobic 86.8 3.8 0.00013 27.0 7.8 75 12-95 3-78 (123)
145 5nul_A Flavodoxin; electron tr 86.8 3.4 0.00012 28.6 7.7 72 19-95 6-83 (138)
146 1jlj_A Gephyrin; globular alph 86.7 2.8 9.4E-05 31.5 7.5 71 11-88 13-103 (189)
147 3eul_A Possible nitrate/nitrit 86.7 2.5 8.7E-05 29.2 7.0 77 11-95 14-93 (152)
148 3iwt_A 178AA long hypothetical 86.4 2 6.9E-05 31.6 6.6 69 12-87 15-105 (178)
149 3kto_A Response regulator rece 86.3 0.34 1.2E-05 33.3 2.1 72 12-95 6-84 (136)
150 4eg0_A D-alanine--D-alanine li 86.1 2.5 8.7E-05 33.8 7.5 53 10-68 11-71 (317)
151 2a5l_A Trp repressor binding p 86.0 4.7 0.00016 29.6 8.6 56 12-72 5-80 (200)
152 1yio_A Response regulatory pro 86.0 2 6.7E-05 31.7 6.4 76 12-95 4-80 (208)
153 3heb_A Response regulator rece 85.9 2.8 9.6E-05 29.0 6.9 76 12-95 4-93 (152)
154 3c3m_A Response regulator rece 85.5 1.7 5.9E-05 29.7 5.5 76 12-95 3-81 (138)
155 3t8y_A CHEB, chemotaxis respon 85.4 2.8 9.5E-05 29.7 6.8 80 7-95 20-102 (164)
156 2ayx_A Sensor kinase protein R 85.4 4.2 0.00014 31.3 8.3 76 12-95 129-205 (254)
157 2qv0_A Protein MRKE; structura 85.3 3.3 0.00011 28.2 7.0 55 9-68 6-61 (143)
158 2an1_A Putative kinase; struct 85.2 3.5 0.00012 32.8 7.9 75 8-95 1-91 (292)
159 1zh2_A KDP operon transcriptio 84.9 1.4 4.7E-05 29.1 4.6 75 12-95 1-76 (121)
160 3t6k_A Response regulator rece 84.5 2 6.9E-05 29.3 5.5 76 12-95 4-82 (136)
161 3f6r_A Flavodoxin; FMN binding 84.4 1.8 6.1E-05 30.5 5.2 54 12-68 1-55 (148)
162 3b2n_A Uncharacterized protein 84.4 4.4 0.00015 27.3 7.2 76 12-95 3-81 (133)
163 3mm4_A Histidine kinase homolo 83.8 3.9 0.00013 30.3 7.2 79 12-98 61-159 (206)
164 2qsj_A DNA-binding response re 83.6 5.6 0.00019 27.4 7.7 77 12-95 3-82 (154)
165 3hly_A Flavodoxin-like domain; 83.4 2.7 9.1E-05 30.3 5.9 56 14-72 2-60 (161)
166 3m6m_D Sensory/regulatory prot 83.4 1.6 5.6E-05 30.2 4.6 76 12-95 14-94 (143)
167 2oqr_A Sensory transduction pr 83.4 1.8 6.1E-05 32.5 5.2 76 11-95 3-79 (230)
168 2zki_A 199AA long hypothetical 83.2 5.9 0.0002 29.1 8.0 57 12-73 4-80 (199)
169 3kcn_A Adenylate cyclase homol 83.1 4.6 0.00016 27.9 7.0 75 12-95 4-80 (151)
170 1mb3_A Cell division response 83.1 2.2 7.5E-05 28.2 5.1 75 13-95 2-79 (124)
171 3eqz_A Response regulator; str 82.7 1 3.4E-05 30.4 3.2 72 12-95 3-78 (135)
172 3c97_A Signal transduction his 82.7 1.9 6.6E-05 29.4 4.7 51 12-68 10-60 (140)
173 1iow_A DD-ligase, DDLB, D-ALA\ 82.2 5.3 0.00018 31.3 7.8 53 11-69 1-61 (306)
174 1di6_A MOGA, molybdenum cofact 82.2 2.7 9.2E-05 31.7 5.7 69 12-87 3-90 (195)
175 2hqr_A Putative transcriptiona 81.4 3.8 0.00013 30.5 6.4 70 14-95 2-72 (223)
176 3cu5_A Two component transcrip 81.1 3.2 0.00011 28.4 5.5 82 11-98 1-85 (141)
177 2qzj_A Two-component response 81.0 2.9 9.9E-05 28.5 5.2 75 12-95 4-79 (136)
178 3rpe_A MDAB, modulator of drug 80.8 4.3 0.00015 31.1 6.5 59 10-73 23-93 (218)
179 1p6q_A CHEY2; chemotaxis, sign 80.3 2.5 8.7E-05 28.2 4.6 76 12-95 6-85 (129)
180 3nbm_A PTS system, lactose-spe 79.6 2.6 8.9E-05 28.6 4.4 73 12-95 6-82 (108)
181 1s8n_A Putative antiterminator 79.6 3.3 0.00011 30.5 5.4 76 11-95 12-89 (205)
182 2vzf_A NADH-dependent FMN redu 79.3 5.3 0.00018 29.6 6.5 79 12-95 2-106 (197)
183 3l6u_A ABC-type sugar transpor 78.9 11 0.00038 29.0 8.6 62 8-71 4-73 (293)
184 1g8l_A Molybdopterin biosynthe 78.6 6.8 0.00023 33.1 7.5 59 22-87 203-267 (411)
185 2q9u_A A-type flavoprotein; fl 78.4 12 0.00041 30.9 9.0 79 12-95 256-345 (414)
186 3n53_A Response regulator rece 78.0 5.6 0.00019 26.9 5.9 75 12-95 3-80 (140)
187 3q9s_A DNA-binding response re 77.7 3.5 0.00012 31.7 5.2 74 13-95 38-112 (249)
188 2bmv_A Flavodoxin; electron tr 77.7 7.3 0.00025 27.8 6.7 48 13-68 2-50 (164)
189 3l49_A ABC sugar (ribose) tran 77.6 12 0.0004 28.8 8.3 58 8-71 1-70 (291)
190 3egc_A Putative ribose operon 77.5 16 0.00055 28.1 9.1 63 8-72 4-74 (291)
191 3b6i_A Flavoprotein WRBA; flav 77.3 3.6 0.00012 30.2 5.0 39 12-51 1-40 (198)
192 1p2f_A Response regulator; DRR 77.3 3.2 0.00011 30.9 4.7 72 11-95 1-75 (220)
193 1jbe_A Chemotaxis protein CHEY 77.2 6 0.00021 26.1 5.8 76 12-95 4-83 (128)
194 1t5b_A Acyl carrier protein ph 76.8 19 0.00065 26.2 9.1 39 12-50 1-43 (201)
195 1uz5_A MOEA protein, 402AA lon 76.8 6.2 0.00021 33.2 6.8 59 22-87 206-270 (402)
196 1a04_A Nitrate/nitrite respons 76.8 5.4 0.00018 29.4 5.9 79 10-95 3-83 (215)
197 3e61_A Putative transcriptiona 75.8 16 0.00054 27.9 8.6 60 9-70 5-72 (277)
198 1f4p_A Flavodoxin; electron tr 74.7 4.9 0.00017 28.0 4.9 51 14-68 2-54 (147)
199 1ykg_A SIR-FP, sulfite reducta 74.0 6.3 0.00022 28.4 5.5 53 12-68 9-62 (167)
200 2i2x_B MTAC, methyltransferase 73.7 12 0.0004 29.3 7.3 94 11-111 122-227 (258)
201 2vyc_A Biodegradative arginine 73.3 11 0.00037 34.3 7.9 74 14-95 2-89 (755)
202 1rtt_A Conserved hypothetical 73.0 8 0.00027 28.4 5.9 77 13-95 7-112 (193)
203 3jy6_A Transcriptional regulat 72.7 28 0.00097 26.4 9.4 59 12-72 7-73 (276)
204 3fvw_A Putative NAD(P)H-depend 72.6 6.6 0.00023 29.1 5.4 37 11-50 1-40 (192)
205 3ezx_A MMCP 1, monomethylamine 72.3 11 0.00038 28.6 6.7 94 12-112 92-201 (215)
206 3k4h_A Putative transcriptiona 72.2 30 0.001 26.4 9.8 63 8-72 4-79 (292)
207 1dc7_A NTRC, nitrogen regulati 72.1 2.8 9.5E-05 27.6 2.9 76 12-95 3-79 (124)
208 3kke_A LACI family transcripti 71.9 17 0.00058 28.3 8.0 57 10-72 13-81 (303)
209 3rot_A ABC sugar transporter, 71.5 21 0.00072 27.6 8.4 53 13-71 4-70 (297)
210 2yxb_A Coenzyme B12-dependent 71.5 8.6 0.00029 27.8 5.6 82 11-99 17-108 (161)
211 1e2b_A Enzyme IIB-cellobiose; 71.4 6.2 0.00021 26.5 4.5 54 13-70 4-58 (106)
212 3n0r_A Response regulator; sig 71.2 15 0.00052 28.9 7.5 81 10-99 158-242 (286)
213 2rgy_A Transcriptional regulat 71.1 33 0.0011 26.3 9.6 61 9-71 5-76 (290)
214 2q62_A ARSH; alpha/beta, flavo 70.7 12 0.00043 29.0 6.8 81 12-95 34-140 (247)
215 3g1w_A Sugar ABC transporter; 70.4 31 0.001 26.6 9.2 54 12-71 4-70 (305)
216 1dcf_A ETR1 protein; beta-alph 70.3 8.7 0.0003 25.7 5.3 31 12-48 7-37 (136)
217 3m9w_A D-xylose-binding peripl 70.0 22 0.00076 27.6 8.3 52 13-71 3-67 (313)
218 1ccw_A Protein (glutamate muta 69.5 14 0.00049 25.7 6.3 80 13-99 4-93 (137)
219 1uf3_A Hypothetical protein TT 69.5 11 0.00036 27.9 6.0 37 62-98 32-71 (228)
220 3k9c_A Transcriptional regulat 69.5 15 0.00051 28.4 7.1 59 12-72 12-76 (289)
221 3c3w_A Two component transcrip 69.4 7 0.00024 29.2 5.0 76 12-95 1-79 (225)
222 3o1i_D Periplasmic protein TOR 69.1 20 0.00069 27.6 7.8 55 12-72 5-73 (304)
223 3h1g_A Chemotaxis protein CHEY 68.8 9.5 0.00032 25.4 5.1 76 12-95 5-85 (129)
224 3s40_A Diacylglycerol kinase; 68.1 13 0.00043 29.7 6.5 62 7-74 3-75 (304)
225 2r25_B Osmosensing histidine p 68.1 11 0.00038 25.2 5.4 76 12-95 2-85 (133)
226 1t0b_A THUA-like protein; treh 68.0 40 0.0014 26.1 15.0 106 28-146 37-153 (252)
227 3h5o_A Transcriptional regulat 67.9 37 0.0013 26.8 9.4 54 12-71 62-127 (339)
228 1ny5_A Transcriptional regulat 67.8 16 0.00055 30.2 7.2 74 14-95 2-76 (387)
229 2fts_A Gephyrin; gephyrin, neu 67.7 4.9 0.00017 34.0 4.1 57 22-85 207-269 (419)
230 2qv7_A Diacylglycerol kinase D 67.3 28 0.00096 28.0 8.5 84 12-107 24-125 (337)
231 1ydg_A Trp repressor binding p 66.9 13 0.00045 27.5 6.0 37 12-50 6-43 (211)
232 3uug_A Multiple sugar-binding 66.8 36 0.0012 26.5 9.0 57 12-71 3-68 (330)
233 3huu_A Transcription regulator 66.2 38 0.0013 26.1 9.0 57 10-72 20-93 (305)
234 3cs3_A Sugar-binding transcrip 66.2 14 0.00047 28.3 6.2 60 9-71 5-66 (277)
235 3lwz_A 3-dehydroquinate dehydr 66.2 26 0.00088 25.3 7.0 29 42-72 49-83 (153)
236 3eag_A UDP-N-acetylmuramate:L- 64.5 53 0.0018 26.2 10.1 33 12-50 4-36 (326)
237 1ehs_A STB, heat-stable entero 64.2 1.7 5.8E-05 23.9 0.3 12 96-107 36-47 (48)
238 1y80_A Predicted cobalamin bin 64.0 21 0.00071 26.7 6.6 90 12-110 88-193 (210)
239 1dz3_A Stage 0 sporulation pro 63.8 9.4 0.00032 25.3 4.3 77 12-95 2-81 (130)
240 3soz_A ORF 245 protein, cytopl 63.3 5 0.00017 31.5 3.0 34 28-69 38-77 (248)
241 3h75_A Periplasmic sugar-bindi 62.9 55 0.0019 25.9 9.8 75 13-95 4-90 (350)
242 8abp_A L-arabinose-binding pro 62.8 41 0.0014 25.8 8.5 53 13-71 3-66 (306)
243 3gbv_A Putative LACI-family tr 62.8 41 0.0014 25.7 8.5 62 9-71 5-78 (304)
244 1i3c_A Response regulator RCP1 62.2 34 0.0011 23.2 7.7 76 12-95 8-95 (149)
245 2fn9_A Ribose ABC transporter, 61.7 51 0.0017 25.1 9.8 53 12-71 2-67 (290)
246 1czn_A Flavodoxin; FMN binding 61.7 13 0.00044 26.5 4.9 50 14-68 2-52 (169)
247 4e5v_A Putative THUA-like prot 61.4 58 0.002 25.7 12.9 73 12-95 4-90 (281)
248 2ohh_A Type A flavoprotein FPR 61.1 36 0.0012 27.7 8.2 56 12-72 256-316 (404)
249 3klo_A Transcriptional regulat 60.2 14 0.00047 27.4 5.0 77 10-95 5-87 (225)
250 4had_A Probable oxidoreductase 60.1 37 0.0013 27.2 7.9 59 7-70 18-94 (350)
251 1uuy_A CNX1, molybdopterin bio 59.7 32 0.0011 24.8 6.8 76 11-88 4-96 (167)
252 3dzd_A Transcriptional regulat 59.4 14 0.00049 30.3 5.3 75 13-95 1-76 (368)
253 1ag9_A Flavodoxin; electron tr 59.2 26 0.00088 25.2 6.2 49 14-68 2-51 (175)
254 1z0s_A Probable inorganic poly 58.8 18 0.00063 28.7 5.7 66 13-95 30-95 (278)
255 3hs3_A Ribose operon repressor 58.6 35 0.0012 26.0 7.3 60 9-70 7-75 (277)
256 1tvm_A PTS system, galactitol- 58.4 24 0.0008 23.8 5.5 57 12-71 21-78 (113)
257 1rli_A Trp repressor binding p 58.4 21 0.00072 25.5 5.7 23 12-34 3-28 (184)
258 3tb6_A Arabinose metabolism tr 58.1 59 0.002 24.7 8.8 58 13-72 16-81 (298)
259 3fwz_A Inner membrane protein 57.8 30 0.001 23.7 6.2 43 10-59 5-47 (140)
260 3u7r_A NADPH-dependent FMN red 56.3 19 0.00065 26.7 5.1 36 11-49 1-39 (190)
261 2fzv_A Putative arsenical resi 55.9 32 0.0011 27.3 6.6 39 10-50 56-97 (279)
262 3kjx_A Transcriptional regulat 55.4 40 0.0014 26.7 7.3 58 12-71 68-133 (344)
263 3miz_A Putative transcriptiona 55.1 30 0.001 26.7 6.4 57 9-71 10-79 (301)
264 1sqs_A Conserved hypothetical 55.1 36 0.0012 25.8 6.7 37 12-49 1-40 (242)
265 3kyj_B CHEY6 protein, putative 55.1 17 0.00057 24.6 4.4 78 10-95 11-91 (145)
266 2hpv_A FMN-dependent NADH-azor 54.9 53 0.0018 24.0 7.5 40 12-51 1-45 (208)
267 3n8k_A 3-dehydroquinate dehydr 54.9 19 0.00063 26.5 4.6 66 3-72 18-104 (172)
268 2m1z_A LMO0427 protein; homolo 54.7 46 0.0016 22.4 6.7 55 13-71 3-66 (106)
269 3ius_A Uncharacterized conserv 54.3 52 0.0018 25.1 7.7 58 10-75 3-76 (286)
270 1dbq_A Purine repressor; trans 54.0 69 0.0024 24.2 9.6 56 10-72 5-73 (289)
271 2gk3_A Putative cytoplasmic pr 54.0 25 0.00085 27.3 5.7 62 26-95 43-122 (256)
272 3dbi_A Sugar-binding transcrip 53.9 78 0.0027 24.8 9.0 54 12-71 61-128 (338)
273 1wu2_A MOEA protein, molybdopt 53.1 11 0.00037 31.7 3.6 44 22-73 210-261 (396)
274 2wc1_A Flavodoxin; electron tr 52.9 16 0.00054 26.5 4.2 52 12-68 1-53 (182)
275 3czc_A RMPB; alpha/beta sandwi 52.7 31 0.0011 23.0 5.3 55 12-71 18-76 (110)
276 4fe7_A Xylose operon regulator 52.5 70 0.0024 26.1 8.5 58 5-68 18-82 (412)
277 3edo_A Flavoprotein, putative 52.3 19 0.00064 25.3 4.4 24 11-34 2-26 (151)
278 3qk7_A Transcriptional regulat 51.8 78 0.0027 24.2 9.5 31 42-72 40-75 (294)
279 2o20_A Catabolite control prot 51.7 84 0.0029 24.5 10.0 58 12-71 63-128 (332)
280 1u0t_A Inorganic polyphosphate 51.7 20 0.00068 28.7 4.9 32 12-49 4-40 (307)
281 1w25_A Stalked-cell differenti 51.7 21 0.00073 29.7 5.3 75 13-95 2-79 (459)
282 3ksm_A ABC-type sugar transpor 51.5 73 0.0025 23.8 8.8 52 14-71 2-68 (276)
283 3o74_A Fructose transport syst 51.1 74 0.0025 23.7 10.2 58 13-72 3-68 (272)
284 3c3k_A Alanine racemase; struc 50.9 63 0.0021 24.6 7.7 60 9-71 5-73 (285)
285 3jvd_A Transcriptional regulat 50.7 50 0.0017 26.1 7.2 53 12-71 64-128 (333)
286 3gv0_A Transcriptional regulat 50.6 80 0.0027 24.0 9.3 61 9-71 5-75 (288)
287 3e3m_A Transcriptional regulat 50.1 43 0.0015 26.6 6.7 54 12-71 70-135 (355)
288 3hcw_A Maltose operon transcri 50.0 71 0.0024 24.4 7.9 59 12-72 7-78 (295)
289 2hsg_A Glucose-resistance amyl 49.7 42 0.0014 26.3 6.5 54 12-71 60-125 (332)
290 2him_A L-asparaginase 1; hydro 49.0 25 0.00087 29.0 5.2 34 62-95 253-288 (358)
291 2r4q_A Phosphotransferase syst 48.9 57 0.002 21.9 6.1 55 13-71 4-66 (106)
292 2h3h_A Sugar ABC transporter, 48.8 90 0.0031 24.0 9.1 53 13-71 2-66 (313)
293 4ici_A Putative flavoprotein; 48.4 46 0.0016 23.9 6.1 24 12-35 13-37 (171)
294 2kyr_A Fructose-like phosphotr 48.4 61 0.0021 21.9 7.0 57 11-71 4-69 (111)
295 3u80_A 3-dehydroquinate dehydr 48.3 47 0.0016 23.9 5.8 44 26-73 32-81 (151)
296 1uqr_A 3-dehydroquinate dehydr 48.2 74 0.0025 22.9 7.3 29 42-72 43-77 (154)
297 3ic5_A Putative saccharopine d 48.0 48 0.0016 21.2 5.7 34 10-50 3-37 (118)
298 3brs_A Periplasmic binding pro 47.6 87 0.003 23.6 8.0 56 10-71 3-74 (289)
299 3hr4_A Nitric oxide synthase, 47.5 36 0.0012 25.9 5.5 52 12-68 40-92 (219)
300 3bul_A Methionine synthase; tr 47.4 39 0.0013 29.8 6.3 81 12-99 98-187 (579)
301 3d7n_A Flavodoxin, WRBA-like p 47.4 14 0.00047 27.2 3.1 53 12-72 6-63 (193)
302 2dri_A D-ribose-binding protei 46.5 91 0.0031 23.4 9.1 53 13-71 2-66 (271)
303 2fep_A Catabolite control prot 46.5 94 0.0032 23.6 9.8 58 12-71 16-81 (289)
304 4hv4_A UDP-N-acetylmuramate--L 46.4 1.2E+02 0.0041 25.8 9.3 55 12-72 22-91 (494)
305 2iks_A DNA-binding transcripti 46.4 95 0.0032 23.6 8.4 59 11-71 19-85 (293)
306 2r48_A Phosphotransferase syst 45.7 66 0.0022 21.6 6.6 54 14-71 5-66 (106)
307 3llv_A Exopolyphosphatase-rela 45.1 52 0.0018 22.2 5.7 33 12-51 6-38 (141)
308 1qo0_D AMIR; binding protein, 44.9 47 0.0016 23.7 5.7 72 12-95 12-83 (196)
309 2ioy_A Periplasmic sugar-bindi 44.6 1E+02 0.0034 23.3 9.8 30 42-71 31-66 (283)
310 1yob_A Flavodoxin 2, flavodoxi 44.0 33 0.0011 24.7 4.7 50 14-68 2-52 (179)
311 3bil_A Probable LACI-family tr 43.9 85 0.0029 24.8 7.6 57 12-71 66-131 (348)
312 4egb_A DTDP-glucose 4,6-dehydr 43.7 50 0.0017 26.0 6.2 32 4-35 16-47 (346)
313 1obo_A Flavodoxin; electron tr 43.0 49 0.0017 23.2 5.5 50 13-68 2-52 (169)
314 2bon_A Lipid kinase; DAG kinas 42.5 29 0.00098 28.0 4.5 57 12-74 29-94 (332)
315 3p0r_A Azoreductase; structura 42.2 47 0.0016 24.7 5.4 39 11-49 3-46 (211)
316 1gtz_A 3-dehydroquinate dehydr 42.0 65 0.0022 23.2 5.7 42 27-72 35-82 (156)
317 1zgh_A Methionyl-tRNA formyltr 41.8 59 0.002 25.5 6.0 55 12-70 30-85 (260)
318 3d8u_A PURR transcriptional re 41.6 1.1E+02 0.0037 22.9 7.8 57 13-71 4-68 (275)
319 3h11_A CAsp8 and FADD-like apo 41.4 37 0.0012 26.8 4.8 42 3-50 34-75 (272)
320 2yq5_A D-isomer specific 2-hyd 40.8 59 0.002 26.5 6.1 51 12-69 1-52 (343)
321 3ouz_A Biotin carboxylase; str 40.6 31 0.0011 28.8 4.6 34 9-49 2-36 (446)
322 2jk1_A HUPR, hydrogenase trans 40.5 57 0.0019 21.5 5.3 74 13-95 2-76 (139)
323 1d4a_A DT-diaphorase, quinone 40.4 68 0.0023 24.9 6.3 37 12-50 2-41 (273)
324 2rjo_A Twin-arginine transloca 39.7 86 0.0029 24.4 6.9 55 10-71 3-72 (332)
325 2r47_A Uncharacterized protein 39.2 4.9 0.00017 29.2 -0.6 36 62-97 84-125 (157)
326 1e5d_A Rubredoxin\:oxygen oxid 39.2 1.5E+02 0.0051 23.8 8.8 56 12-69 252-310 (402)
327 3d02_A Putative LACI-type tran 39.0 1.2E+02 0.0043 22.9 8.3 57 13-71 5-70 (303)
328 1qpz_A PURA, protein (purine n 38.9 1.2E+02 0.0041 23.7 7.7 54 11-71 57-123 (340)
329 4g65_A TRK system potassium up 38.8 20 0.0007 30.4 3.2 55 12-74 3-57 (461)
330 4dik_A Flavoprotein; TM0755, e 38.7 1.7E+02 0.0058 24.3 10.1 58 12-72 265-328 (410)
331 3r5x_A D-alanine--D-alanine li 37.6 60 0.0021 25.2 5.6 50 12-69 3-62 (307)
332 4eys_A MCCC family protein; MC 37.6 37 0.0013 27.8 4.4 68 12-99 245-318 (346)
333 3ged_A Short-chain dehydrogena 37.4 98 0.0033 23.8 6.7 32 14-51 3-35 (247)
334 2yvt_A Hypothetical protein AQ 37.2 33 0.0011 25.8 3.9 11 62-72 32-42 (260)
335 2hna_A Protein MIOC, flavodoxi 37.2 20 0.00068 24.9 2.4 50 13-68 2-52 (147)
336 3clk_A Transcription regulator 37.0 1.2E+02 0.0042 22.8 7.4 62 9-72 5-75 (290)
337 2yvq_A Carbamoyl-phosphate syn 36.9 80 0.0027 22.0 5.6 46 58-105 92-141 (143)
338 2l2q_A PTS system, cellobiose- 36.0 89 0.0031 20.5 5.5 28 42-70 32-59 (109)
339 1ycg_A Nitric oxide reductase; 35.2 1.6E+02 0.0054 23.7 8.0 54 13-68 252-308 (398)
340 1pyo_A Caspase-2; apoptosis, c 35.1 1E+02 0.0035 22.2 6.1 42 3-50 24-79 (167)
341 1vmd_A MGS, methylglyoxal synt 35.0 1.1E+02 0.0039 22.5 6.3 63 42-104 73-144 (178)
342 1req_A Methylmalonyl-COA mutas 34.6 82 0.0028 28.6 6.4 81 11-98 595-685 (727)
343 3sr3_A Microcin immunity prote 34.5 74 0.0025 25.8 5.8 67 13-99 232-306 (336)
344 2amj_A Modulator of drug activ 34.4 1.2E+02 0.0043 22.2 6.7 58 12-72 12-79 (204)
345 3g85_A Transcriptional regulat 34.2 1.5E+02 0.005 22.3 8.6 78 10-95 9-95 (289)
346 3f2v_A General stress protein 34.2 19 0.00066 26.7 2.0 67 12-87 1-83 (192)
347 3p45_A Caspase-6; protease, hu 34.2 1.2E+02 0.0041 22.2 6.4 47 3-57 35-95 (179)
348 2xij_A Methylmalonyl-COA mutas 33.8 64 0.0022 29.5 5.6 92 11-109 603-709 (762)
349 3gyb_A Transcriptional regulat 33.7 1.4E+02 0.0047 22.4 7.0 58 11-71 4-68 (280)
350 3klb_A Putative flavoprotein; 33.6 72 0.0025 22.5 5.0 30 12-46 4-34 (162)
351 3tla_A MCCF; serine protease, 33.5 71 0.0024 26.4 5.5 68 12-99 263-338 (371)
352 1b93_A Protein (methylglyoxal 33.2 93 0.0032 22.2 5.5 62 42-103 57-127 (152)
353 2qu7_A Putative transcriptiona 33.2 1.1E+02 0.0037 23.1 6.4 58 12-72 8-73 (288)
354 4ew6_A D-galactose-1-dehydroge 33.1 1.7E+02 0.0057 23.2 7.7 54 12-71 25-90 (330)
355 1qtn_A Caspase-8; apoptosis, d 33.1 1.3E+02 0.0046 21.5 6.8 42 3-50 14-76 (164)
356 3brq_A HTH-type transcriptiona 33.0 1.1E+02 0.0039 22.9 6.5 53 12-71 19-86 (296)
357 3luf_A Two-component system re 33.0 47 0.0016 25.4 4.2 74 12-95 4-78 (259)
358 1tjy_A Sugar transport protein 32.9 1.7E+02 0.0058 22.6 9.1 52 13-71 4-69 (316)
359 3bbl_A Regulatory protein of L 32.5 1.6E+02 0.0055 22.2 8.8 30 42-71 38-73 (287)
360 2c4w_A 3-dehydroquinate dehydr 32.3 1.5E+02 0.0051 21.8 7.3 45 26-72 37-88 (176)
361 3u9t_A MCC alpha, methylcroton 32.2 1.3E+02 0.0044 26.9 7.4 39 6-51 20-60 (675)
362 3lk7_A UDP-N-acetylmuramoylala 31.9 2.2E+02 0.0076 23.7 9.1 33 11-50 8-40 (451)
363 1byk_A Protein (trehalose oper 31.7 1.5E+02 0.0052 21.7 7.5 53 13-71 3-67 (255)
364 2qh8_A Uncharacterized protein 31.2 1.4E+02 0.0048 22.9 6.8 29 60-96 67-96 (302)
365 3r6w_A FMN-dependent NADH-azor 31.0 94 0.0032 22.8 5.5 39 12-50 1-43 (212)
366 3m2p_A UDP-N-acetylglucosamine 31.0 1.8E+02 0.0061 22.3 7.8 60 11-76 1-76 (311)
367 1a2o_A CHEB methylesterase; ba 31.0 54 0.0018 26.6 4.4 76 12-95 3-80 (349)
368 3lzd_A DPH2; diphthamide biosy 30.8 1.6E+02 0.0054 24.4 7.2 41 26-72 284-324 (378)
369 4fb5_A Probable oxidoreductase 30.6 1.5E+02 0.0051 23.6 7.1 17 54-70 85-102 (393)
370 1y7p_A Hypothetical protein AF 30.5 1.1E+02 0.0037 23.4 5.6 85 11-99 86-179 (223)
371 3luf_A Two-component system re 30.4 54 0.0019 25.0 4.2 76 12-95 124-203 (259)
372 3u7i_A FMN-dependent NADH-azor 29.6 1.2E+02 0.004 22.8 5.9 39 12-50 4-49 (223)
373 3hn7_A UDP-N-acetylmuramate-L- 29.5 2.7E+02 0.0091 23.8 9.6 55 12-72 19-90 (524)
374 2i2c_A Probable inorganic poly 29.4 77 0.0026 24.6 4.9 28 62-95 35-65 (272)
375 4e6p_A Probable sorbitol dehyd 29.4 1.8E+02 0.0061 21.8 7.5 37 7-49 2-39 (259)
376 3e4c_A Caspase-1; zymogen, inf 29.2 1.5E+02 0.0052 23.6 6.7 42 3-50 49-103 (302)
377 2dko_A Caspase-3; low barrier 29.0 1.2E+02 0.004 21.4 5.4 42 3-50 7-62 (146)
378 1kjq_A GART 2, phosphoribosylg 28.9 80 0.0028 25.4 5.2 36 8-50 7-42 (391)
379 3va7_A KLLA0E08119P; carboxyla 28.7 1.1E+02 0.0038 29.6 6.6 33 11-50 30-62 (1236)
380 3v2h_A D-beta-hydroxybutyrate 28.5 2E+02 0.0068 22.0 7.5 39 4-48 16-55 (281)
381 2xw6_A MGS, methylglyoxal synt 28.4 93 0.0032 21.7 4.7 65 42-107 49-123 (134)
382 2ehd_A Oxidoreductase, oxidore 28.3 85 0.0029 23.1 4.9 36 8-49 1-36 (234)
383 3od5_A Caspase-6; caspase doma 28.2 1.8E+02 0.006 22.8 6.8 42 3-50 12-67 (278)
384 1jye_A Lactose operon represso 28.1 1.9E+02 0.0065 22.6 7.3 57 12-70 61-126 (349)
385 3l9w_A Glutathione-regulated p 28.0 1E+02 0.0035 25.7 5.7 33 12-51 4-36 (413)
386 2fvy_A D-galactose-binding per 28.0 1.9E+02 0.0067 21.7 10.0 76 13-95 3-88 (309)
387 1t0i_A YLR011WP; FMN binding p 27.2 96 0.0033 22.1 4.9 36 14-49 2-44 (191)
388 3oa2_A WBPB; oxidoreductase, s 27.0 2.3E+02 0.0079 22.3 8.9 24 12-35 3-26 (318)
389 4a5o_A Bifunctional protein fo 26.9 2.3E+02 0.0078 22.5 7.2 53 12-71 161-213 (286)
390 2pv7_A T-protein [includes: ch 26.6 1.7E+02 0.0059 22.7 6.6 52 11-70 20-73 (298)
391 2nn3_C Caspase-1; cysteine pro 26.5 1.7E+02 0.0058 23.4 6.5 41 4-50 52-105 (310)
392 2h4a_A YRAM (HI1655); perplasm 26.2 1.3E+02 0.0044 23.9 5.8 79 12-95 122-205 (325)
393 3o9z_A Lipopolysaccaride biosy 26.0 2.4E+02 0.0081 22.1 9.1 24 12-35 3-26 (312)
394 3lft_A Uncharacterized protein 25.7 2.2E+02 0.0075 21.6 8.8 29 60-96 60-89 (295)
395 3r6d_A NAD-dependent epimerase 25.7 1.1E+02 0.0037 22.2 5.0 33 11-49 4-37 (221)
396 1tll_A Nitric-oxide synthase, 25.3 1.2E+02 0.0041 27.2 5.9 58 6-68 2-63 (688)
397 3nxk_A Cytoplasmic L-asparagin 25.3 2.1E+02 0.0071 23.2 6.9 32 62-95 245-278 (334)
398 1gud_A ALBP, D-allose-binding 25.2 2.2E+02 0.0075 21.4 8.8 30 42-71 31-68 (288)
399 3g8r_A Probable spore coat pol 25.0 1.9E+02 0.0066 23.6 6.7 65 28-104 83-149 (350)
400 3sy8_A ROCR; TIM barrel phosph 24.9 68 0.0023 26.2 4.0 77 12-95 3-81 (400)
401 3h11_B Caspase-8; cell death, 24.9 1.7E+02 0.0057 22.8 6.1 42 3-50 8-70 (271)
402 3sc6_A DTDP-4-dehydrorhamnose 24.7 1.2E+02 0.004 23.0 5.2 58 11-74 4-68 (287)
403 3l07_A Bifunctional protein fo 24.7 2.6E+02 0.0089 22.1 7.5 53 12-71 161-213 (285)
404 3p2o_A Bifunctional protein fo 24.6 2.6E+02 0.009 22.1 7.3 53 12-71 160-212 (285)
405 2r85_A PURP protein PF1517; AT 24.5 72 0.0025 24.9 4.0 32 12-51 2-33 (334)
406 3uhf_A Glutamate racemase; str 24.1 2.5E+02 0.0086 21.9 7.0 92 2-105 15-127 (274)
407 1m72_A Caspase-1; caspase, cys 24.1 1.4E+02 0.0047 23.3 5.5 19 26-50 59-77 (272)
408 2ql9_A Caspase-7; cysteine pro 23.9 1.7E+02 0.006 21.2 5.6 20 25-50 71-90 (173)
409 3uuw_A Putative oxidoreductase 23.9 2.4E+02 0.0081 21.8 7.0 53 12-71 6-75 (308)
410 1f0k_A MURG, UDP-N-acetylgluco 23.8 83 0.0028 24.7 4.3 38 8-51 2-43 (364)
411 3dii_A Short-chain dehydrogena 23.8 2.3E+02 0.0077 21.1 6.7 30 14-49 3-33 (247)
412 1a4i_A Methylenetetrahydrofola 23.6 2.8E+02 0.0096 22.1 7.5 53 12-71 165-217 (301)
413 4e5s_A MCCFLIKE protein (BA_56 23.5 1.4E+02 0.0047 24.1 5.5 68 12-99 224-302 (331)
414 2x7x_A Sensor protein; transfe 23.5 2.5E+02 0.0087 21.5 7.6 58 12-71 6-71 (325)
415 2fp3_A Caspase NC; apoptosis, 23.5 1.9E+02 0.0064 23.2 6.3 41 4-50 52-105 (316)
416 3c24_A Putative oxidoreductase 23.4 1.3E+02 0.0046 23.0 5.3 38 7-50 6-43 (286)
417 3k5i_A Phosphoribosyl-aminoimi 23.1 1.1E+02 0.0039 25.0 5.1 40 3-49 13-54 (403)
418 4id9_A Short-chain dehydrogena 23.1 2.6E+02 0.009 21.6 7.5 60 11-76 18-91 (347)
419 3s2y_A Chromate reductase; ura 28.4 18 0.00061 26.9 0.0 34 12-48 6-42 (199)
420 2csu_A 457AA long hypothetical 22.6 3.4E+02 0.012 22.7 8.0 24 12-35 293-316 (457)
421 3ief_A TRNA (guanine-N(1)-)-me 22.3 1E+02 0.0035 23.7 4.2 77 11-95 2-84 (233)
422 2j32_A Caspase-3; Pro-caspase3 22.0 1.8E+02 0.0061 22.3 5.7 19 26-50 44-62 (250)
423 3ngx_A Bifunctional protein fo 21.5 2.4E+02 0.0083 22.2 6.4 53 12-71 150-202 (276)
424 2w70_A Biotin carboxylase; lig 21.5 75 0.0026 26.4 3.6 32 11-49 1-32 (449)
425 4h1h_A LMO1638 protein; MCCF-l 21.1 1.4E+02 0.0048 23.9 5.1 68 12-99 224-299 (327)
426 3h5t_A Transcriptional regulat 21.1 3E+02 0.01 21.5 9.9 56 12-71 68-137 (366)
427 2bpo_A CPR, P450R, NADPH-cytoc 20.8 1.6E+02 0.0054 26.3 5.8 54 12-68 49-104 (682)
428 3dhn_A NAD-dependent epimerase 20.8 2.4E+02 0.0082 20.2 6.8 56 12-73 4-78 (227)
429 3g23_A Peptidase U61, LD-carbo 20.6 79 0.0027 24.8 3.4 68 12-99 185-262 (274)
430 3l4b_C TRKA K+ channel protien 20.6 1.4E+02 0.0047 21.8 4.7 31 14-51 2-32 (218)
431 3u3x_A Oxidoreductase; structu 20.5 3.3E+02 0.011 21.7 8.8 53 13-71 27-97 (361)
432 2vk2_A YTFQ, ABC transporter p 20.4 2.8E+02 0.0097 20.9 9.7 52 13-71 3-67 (306)
433 4avf_A Inosine-5'-monophosphat 20.4 4E+02 0.014 22.6 8.7 99 12-113 241-360 (490)
434 3bre_A Probable two-component 20.3 46 0.0016 26.4 2.0 51 12-68 18-69 (358)
435 2ftc_D Mitochondrial ribosomal 20.1 1.3E+02 0.0044 22.0 4.2 9 27-35 133-141 (175)
436 4a26_A Putative C-1-tetrahydro 20.1 3.1E+02 0.011 21.8 6.8 53 12-71 165-219 (300)
437 4ffl_A PYLC; amino acid, biosy 20.1 1.5E+02 0.0051 23.6 5.1 33 12-51 1-33 (363)
No 1
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=100.00 E-value=9.2e-38 Score=243.67 Aligned_cols=176 Identities=39% Similarity=0.673 Sum_probs=146.8
Q ss_pred CcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCc---chHHHHHHHhC
Q 037843 13 NPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQES---GISFRTVLELG 89 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~---~~~~~~i~~~~ 89 (203)
+||+|||++++|+.++.+++++. |+.+.+++++..+.+++...++|||||+||++++.+. +...++++++.
T Consensus 2 ~mi~iid~~~s~~~~~~~~l~~~------G~~~~v~~~~~~~~~~~~~~~~dglil~gG~~~~~~~~~~~~~~~~i~~~~ 75 (195)
T 1qdl_B 2 DLTLIIDNYDSFVYNIAQIVGEL------GSYPIVIRNDEISIKGIERIDPDRLIISPGPGTPEKREDIGVSLDVIKYLG 75 (195)
T ss_dssp CEEEEEECSCSSHHHHHHHHHHT------TCEEEEEETTTSCHHHHHHHCCSEEEECCCSSCTTSHHHHTTHHHHHHHHT
T ss_pred CEEEEEECCCchHHHHHHHHHhC------CCEEEEEeCCCCCHHHHhhCCCCEEEECCCCCChhhhhhhhHHHHHHHHhc
Confidence 45999999999999999999999 9999999876445667765468999999999998763 33456777777
Q ss_pred CCCcee--ehhHHHHHHHhCCeecccccccccc-ceeEEEcccccccccccCCCCceEEeecccceeecCCCCCCCeEEE
Q 037843 90 PTMPLF--CMGLKCIGEALEGRLYVLLLVSCMG-KALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVT 166 (203)
Q Consensus 90 ~~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g-~~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~ 166 (203)
.++|+| |+|||+|+.++||++.+.. ...+| +..+.++.. ..+++|+++++.+.++++|++.|.. +|++++++
T Consensus 76 ~~~PvLGIC~G~QlL~~~~gg~v~~~~-~~~~g~~~~v~~~~~-~~~~l~~~~~~~~~v~~~H~~~v~~---l~~~~~vl 150 (195)
T 1qdl_B 76 KRTPILGVCLGHQAIGYAFGAKIRRAR-KVFHGKISNIILVNN-SPLSLYYGIAKEFKATRYHSLVVDE---VHRPLIVD 150 (195)
T ss_dssp TTSCEEEETHHHHHHHHHTTCEEEEEE-EEEEEEEEEEEECCS-SCCSTTTTCCSEEEEEEEEEEEEEC---CCTTEEEE
T ss_pred CCCcEEEEehHHHHHHHHhCCEEeccC-CCcCCCceEEEECCC-CHhHHHhcCCCceEEeccccchhhh---CCCCcEEE
Confidence 789999 9999999999999999876 34455 466766532 1128999998889999999999976 67999999
Q ss_pred EEc-CCCcEEEEEeCCCCcEEEEcCCCCCCCCCCC
Q 037843 167 AWT-EDGLIMAARHKKYKHLHGVQFHPESILTSEG 200 (203)
Q Consensus 167 a~s-~~~~v~a~~~~~~~~i~gvQfHPE~~~~~~g 200 (203)
|++ +++.++|+++++++ ++|+|||||++.+++|
T Consensus 151 a~s~~~g~i~a~~~~~~~-~~gvQfHPE~~~~~~g 184 (195)
T 1qdl_B 151 AISAEDNEIMAIHHEEYP-IYGVQFHPESVGTSLG 184 (195)
T ss_dssp EEESSSCCEEEEEESSSS-EEEESSBTTSTTCTTH
T ss_pred EEECCCCcEEEEEeCCCC-EEEEecCCCCCCCccH
Confidence 999 89999999998876 9999999999987765
No 2
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=100.00 E-value=4.5e-36 Score=233.52 Aligned_cols=172 Identities=36% Similarity=0.603 Sum_probs=135.6
Q ss_pred CcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhc----cCCCEEEECCCCCCCCCcchHHHHHHHh
Q 037843 13 NPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKR----KKPRGVVISPGPGAPQESGISFRTVLEL 88 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~----~~~dgiil~GG~~~~~~~~~~~~~i~~~ 88 (203)
++|+||||++||++++.++++++ |+++.+++++ .+.+++.. .+.+++||+||++++.+.+...++++.+
T Consensus 1 ~~i~iiDn~~s~~~~i~~~l~~~------G~~~~v~~~~-~~~~~i~~~l~~~~~~~iil~gGpg~~~~~~~~~~l~~~~ 73 (192)
T 1i1q_B 1 ADILLLDNIDSFTWNLADQLRTN------GHNVVIYRNH-IPAQTLIDRLATMKNPVLMLSPGPGVPSEAGCMPELLTRL 73 (192)
T ss_dssp CEEEEEECSCSSHHHHHHHHHHT------TCEEEEEETT-SCSHHHHHHHTTCSSEEEEECCCSSCGGGSTTHHHHHHHH
T ss_pred CcEEEEECCccHHHHHHHHHHHC------CCeEEEEECC-CCHHHHHHHhhhccCCeEEECCCCcCchhCchHHHHHHHH
Confidence 57999999999999999999999 9999999876 33344422 1356799999999998877666667667
Q ss_pred CCCCcee--ehhHHHHHHHhCCeeccccccccccceeEEEcccccccccccCCCCceEEeecccceeecCCCCCCCeEEE
Q 037843 89 GPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVT 166 (203)
Q Consensus 89 ~~~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~ 166 (203)
..++||| |+|||+|+.++||++.+.. ...+|....... ..+++|+++++.+.++++|++.+.. +|++++++
T Consensus 74 ~~~~PilGIC~G~Qll~~~~Gg~v~~~~-~~~~g~~~~~~~---~~~~l~~~~~~~~~v~~~H~~~v~~---lp~~~~v~ 146 (192)
T 1i1q_B 74 RGKLPIIGICLGHQAIVEAYGGYVGQAG-EILHGKATSIEH---DGQAMFAGLANPLPVARYHSLVGSN---VPAGLTIN 146 (192)
T ss_dssp BTTBCEEEETHHHHHHHHHTSCCCCC----CCSSEEEEEEE---CCCGGGTTSCSSEEEEECCC---CC---CCTTCEEE
T ss_pred hcCCCEEEECcChHHHHHHhCCEEEeCC-CcEecceeEEec---CCChHHhcCCCCcEEEechhhHhhh---CCCccEEE
Confidence 7789999 9999999999999998775 456776333222 2267999999899999999999976 67899999
Q ss_pred EEcCCCcEEEEEeCCCCcEEEEcCCCCCCCCCCC
Q 037843 167 AWTEDGLIMAARHKKYKHLHGVQFHPESILTSEG 200 (203)
Q Consensus 167 a~s~~~~v~a~~~~~~~~i~gvQfHPE~~~~~~g 200 (203)
|.+ ++.++++++.+++ +||+|||||++.+++|
T Consensus 147 a~~-~~~~~ai~~~~~~-~~gvQfHPE~~~~~~g 178 (192)
T 1i1q_B 147 AHF-NGMVMAVRHDADR-VCGFQFHPESILTTQG 178 (192)
T ss_dssp EEE-TTEEEEEEETTTT-EEEESSBTTSTTCTTH
T ss_pred ECC-CCcEEEEEECCCC-EEEEEccCcccCCccc
Confidence 965 4679999988776 9999999999988766
No 3
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A
Probab=100.00 E-value=1.3e-35 Score=230.23 Aligned_cols=171 Identities=22% Similarity=0.365 Sum_probs=143.7
Q ss_pred cEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHh-CCCC
Q 037843 14 PIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGISFRTVLEL-GPTM 92 (203)
Q Consensus 14 ~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~~-~~~~ 92 (203)
||+|||++++|+.++.+++++. |+.+.+++.+ .+.+++...++|||||+||+ ++.+.+...++++++ +.++
T Consensus 2 mi~iid~~~~~~~~~~~~l~~~------G~~~~~~~~~-~~~~~~~~~~~dglil~Gg~-~~~~~~~~~~~i~~~~~~~~ 73 (189)
T 1wl8_A 2 MIVIMDNGGQYVHRIWRTLRYL------GVETKIIPNT-TPLEEIKAMNPKGIIFSGGP-SLENTGNCEKVLEHYDEFNV 73 (189)
T ss_dssp EEEEEECSCTTHHHHHHHHHHT------TCEEEEEETT-CCHHHHHHTCCSEEEECCCS-CTTCCTTHHHHHHTGGGTCS
T ss_pred eEEEEECCCchHHHHHHHHHHC------CCeEEEEECC-CChHHhcccCCCEEEECCCC-ChhhhhhHHHHHHHHhhCCC
Confidence 5999999999999999999999 9999999875 35666654468999999999 776655556777775 6889
Q ss_pred cee--ehhHHHHHHHhCCeeccccccccccceeEEEcccccccccccCCCCceEEeecccceeecCCCCCCCeEEEEEcC
Q 037843 93 PLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWTE 170 (203)
Q Consensus 93 Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~ 170 (203)
|+| |+|||+|+.++||++.+.. ..++|+..+.... .+++|+++++.+.++++|++.+.. +|++++++|+++
T Consensus 74 PilGIC~G~Q~l~~~~gg~v~~~~-~~~~G~~~~~~~~---~~~l~~~~~~~~~~~~~h~~~v~~---l~~~~~vla~s~ 146 (189)
T 1wl8_A 74 PILGICLGHQLIAKFFGGKVGRGE-KAEYSLVEIEIID---EXEIFKGLPKRLKVWESHMDEVKE---LPPKFKILARSE 146 (189)
T ss_dssp CEEEETHHHHHHHHHHTCEEEECS-CCSCEEEEEEESC---C--CCTTSCSEEEEEECCSEEEEE---CCTTEEEEEEES
T ss_pred eEEEEcHHHHHHHHHhCCceecCC-CcccCceeEEEec---CchHHhCCCCceEEEEEeeeehhh---CCCCcEEEEEcC
Confidence 999 9999999999999999876 4578886666543 367999888888999999999876 678999999999
Q ss_pred CCcEEEEEeCCCCcEEEEcCCCCCCCCCCC
Q 037843 171 DGLIMAARHKKYKHLHGVQFHPESILTSEG 200 (203)
Q Consensus 171 ~~~v~a~~~~~~~~i~gvQfHPE~~~~~~g 200 (203)
++.+++++++++| ++|+|||||++.+++|
T Consensus 147 ~g~i~a~~~~~~~-~~gvQfHPE~~~~~~g 175 (189)
T 1wl8_A 147 TCPIEAMKHEELP-IYGVQFHPEVAHTEKG 175 (189)
T ss_dssp SCSCSEEEESSSC-EEEESSCTTSTTSTTH
T ss_pred CCCEEEEEeCCce-EEEEecCCCcCCCcch
Confidence 9999999999876 9999999999887654
No 4
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=100.00 E-value=2.9e-36 Score=266.40 Aligned_cols=179 Identities=22% Similarity=0.354 Sum_probs=139.5
Q ss_pred ccCCC--CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcchHHHH
Q 037843 7 LSKND--KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGISFRT 84 (203)
Q Consensus 7 ~~~~~--~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~~~~~ 84 (203)
+|.+. ..+|+|||++++|+++++++++++ |+.+++++++ .+.+++...++|||||||||+++++.+.. ..
T Consensus 3 ~m~~~~~~~~I~IlD~g~~~~~~i~r~lr~~------Gv~~~i~p~~-~~~~~i~~~~~dgIILsGGp~sv~~~~~~-~~ 74 (527)
T 3tqi_A 3 AMLKDIHQHRILILDFGSQYAQLIARRVREI------GVYCELMPCD-IDEETIRDFNPHGIILSGGPETVTLSHTL-RA 74 (527)
T ss_dssp -----CCCSEEEEEECSCTTHHHHHHHHHHH------TCEEEEEETT-CCSSSSTTTCCSEEEECCCCC----------C
T ss_pred cccccccCCeEEEEECCCccHHHHHHHHHHC------CCeEEEEECC-CCHHHHHhcCCCEEEECCcCcccccCCCh-hh
Confidence 45433 258999999999999999999999 9999999875 55666766678999999999998765432 11
Q ss_pred HHH-hCCCCcee--ehhHHHHHHHhCCeeccccccccccceeEEEcccccccccccCCCC--------ceEEeeccccee
Q 037843 85 VLE-LGPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEADGLLAGLSN--------PFTAGRYHGLVI 153 (203)
Q Consensus 85 i~~-~~~~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~~~--------~~~~~~~H~~~v 153 (203)
.+. ++.++||| |+|||+|+.++||+|.+.. ..++|+..+.+... ++||++++. .+.++++|+|.|
T Consensus 75 ~~~~~~~~~PvLGIC~G~Qlla~~lGG~V~~~~-~~e~G~~~v~~~~~---~~l~~~l~~~~~~~~~~~~~v~~~H~d~v 150 (527)
T 3tqi_A 75 PAFIFEIGCPVLGICYGMQTMAYQLGGKVNRTA-KAEFGHAQLRVLNP---AFLFDGIEDQVSPQGEPLLDVWMSHGDIV 150 (527)
T ss_dssp CCSTTTSSSCEEEETHHHHHHHHHSSSCBC------CEEEEEEEESSC---TTTTSSCCSBCCTTSCCEEEEEEESSSCB
T ss_pred HHHHHhcCCCEEEEChHHHHHHHHcCCeEEeCC-CccccceEEEEcCC---ChhhcCCccccccccccceEEEEEcccch
Confidence 222 45789999 9999999999999999987 57889988887643 679999987 588999999999
Q ss_pred ecCCCCCCCeEEEEEcCCCcEEEEEeCCCCcEEEEcCCCCCCCCCCCC
Q 037843 154 EKDSFRSDELEVTAWTEDGLIMAARHKKYKHLHGVQFHPESILTSEGK 201 (203)
Q Consensus 154 ~~~~l~~~~~~~~a~s~~~~v~a~~~~~~~~i~gvQfHPE~~~~~~g~ 201 (203)
.. +|++++++|+++++.++|+++.+++ +||+|||||++++++|.
T Consensus 151 ~~---lp~g~~v~A~s~~~~i~ai~~~~~~-~~GvQFHPE~~~t~~G~ 194 (527)
T 3tqi_A 151 SE---LPPGFEATACTDNSPLAAMADFKRR-FFGLQFHPEVTHTPQGH 194 (527)
T ss_dssp CS---CCTTCEEEEEETTEEEEEEECSSSC-EEEESBCSSSTTSTTHH
T ss_pred hc---cCCCCEEEEEeCCCcEEEEEcCCCC-EEEEEeccccccccccc
Confidence 87 7899999999999999999998776 99999999999998763
No 5
>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1
Probab=100.00 E-value=5.4e-36 Score=236.54 Aligned_cols=171 Identities=24% Similarity=0.316 Sum_probs=143.8
Q ss_pred CCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCC-CCCCCCcc---hHHHHHH
Q 037843 11 DKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPG-PGAPQESG---ISFRTVL 86 (203)
Q Consensus 11 ~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG-~~~~~~~~---~~~~~i~ 86 (203)
-|+||++||++++|+.++.++|+++ |+.+.+++++ .+++++. ++|||||+|| ++++++.. .+.+.+.
T Consensus 12 ~~~~i~~id~~~~~~~~~~~~l~~~------G~~~~vv~~~-~~~~~l~--~~DglIl~GG~p~~~~~~~~~~~l~~~~~ 82 (212)
T 2a9v_A 12 HMLKIYVVDNGGQWTHREWRVLREL------GVDTKIVPND-IDSSELD--GLDGLVLSGGAPNIDEELDKLGSVGKYID 82 (212)
T ss_dssp CCCBEEEEEESCCTTCHHHHHHHHT------TCBCCEEETT-SCGGGGT--TCSEEEEEEECSCGGGTGGGHHHHHHHHH
T ss_pred ccceEEEEeCCCccHHHHHHHHHHC------CCEEEEEeCC-CCHHHHh--CCCEEEECCCCCCCCcccccchhHHHHHH
Confidence 3789999999999999999999999 9999888875 3455555 4899999999 88887652 2233332
Q ss_pred HhCCCCcee--ehhHHHHHHHhCCeeccccccccccceeEEEcccccccccccCCCCceEEeecccceeecCCCCCCCeE
Q 037843 87 ELGPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELE 164 (203)
Q Consensus 87 ~~~~~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~~~~~ 164 (203)
++++|+| |+|||+|+.++||++.+.. ..+.|+..+.+.. .+++|+++++.+.++++|++.|.. +|++++
T Consensus 83 --~~~~PiLGIC~G~Qll~~~lGg~v~~~~-~~~~G~~~v~~~~---~~~l~~~~~~~~~v~~~H~~~v~~---l~~~~~ 153 (212)
T 2a9v_A 83 --DHNYPILGICVGAQFIALHFGASVVKAK-HPEFGKTKVSVMH---SENIFGGLPSEITVWENHNDEIIN---LPDDFT 153 (212)
T ss_dssp --HCCSCEEEETHHHHHHHHHTTCEEEEEE-EEEEEEEEEEESC---CCGGGTTCCSEEEEEEEEEEEEES---CCTTEE
T ss_pred --hCCCCEEEEChHHHHHHHHhCCEEEcCC-CcccCceeeEECC---CChhHhcCCCceEEEeEhhhhHhh---CCCCcE
Confidence 4679999 9999999999999999886 5678888887754 267999998889999999999986 679999
Q ss_pred EEEEcCCCcEEEEEeCCCCcEEEEcCCCCCCCCCCC
Q 037843 165 VTAWTEDGLIMAARHKKYKHLHGVQFHPESILTSEG 200 (203)
Q Consensus 165 ~~a~s~~~~v~a~~~~~~~~i~gvQfHPE~~~~~~g 200 (203)
++|+++++.++|+++++++ ++|+|||||++.++.|
T Consensus 154 vlA~s~d~~i~ai~~~~~~-i~gvQfHPE~~~~~~g 188 (212)
T 2a9v_A 154 LAASSATCQVQGFYHKTRP-IYATQFHPEVEHTQYG 188 (212)
T ss_dssp EEEECSSCSCSEEEESSSS-EEEESSCTTSTTSTTH
T ss_pred EEEEeCCCCEEEEEECCCC-EEEEEeCCCCCCCccH
Confidence 9999999999999998766 9999999999987654
No 6
>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens}
Probab=100.00 E-value=9.6e-36 Score=236.01 Aligned_cols=174 Identities=21% Similarity=0.304 Sum_probs=136.6
Q ss_pred CCCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcchHHHHHHH-h
Q 037843 10 NDKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGISFRTVLE-L 88 (203)
Q Consensus 10 ~~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~-~ 88 (203)
++.++|+|||++++|..++.++++++ |+.+.+++++ .+.+++...++|||||+||++++++.... .+.++ +
T Consensus 22 ~~~~~I~iiD~g~~~~~~i~~~l~~~------G~~~~vv~~~-~~~~~l~~~~~dglil~Gg~~~~~~~~~~-~~~~~~~ 93 (218)
T 2vpi_A 22 SMEGAVVILDAGAQYGKVIDRRVREL------FVQSEIFPLE-TPAFAIKEQGFRAIIISGGPNSVYAEDAP-WFDPAIF 93 (218)
T ss_dssp -CTTCEEEEECSTTTTHHHHHHHHHT------TCCEEEECTT-CCHHHHHHHTCSEEEEEC---------CC-CCCGGGG
T ss_pred ecCCeEEEEECCCchHHHHHHHHHHC------CCEEEEEECC-CChHHHhhcCCCEEEECCCCcccccccch-hHHHHHH
Confidence 34578999999999999999999999 9999998875 45666654468999999999877642210 01122 3
Q ss_pred CCCCcee--ehhHHHHHHHhCCeeccccccccccceeEEEcccccccccccCCCCceEEeecccceeecCCCCCCCeEEE
Q 037843 89 GPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVT 166 (203)
Q Consensus 89 ~~~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~ 166 (203)
+.++|+| |+|||+|+.++||++.+.. ..+.|+..+.++. .++||+++++.+.++++|++.|.. +|++++++
T Consensus 94 ~~~~PilGIC~G~Qll~~~~GG~v~~~~-~~~~G~~~v~~~~---~~~l~~~l~~~~~v~~~H~~~v~~---l~~~~~vl 166 (218)
T 2vpi_A 94 TIGKPVLGICYGMQMMNKVFGGTVHKKS-VREDGVFNISVDN---TCSLFRGLQKEEVVLLTHGDSVDK---VADGFKVV 166 (218)
T ss_dssp TSSCCEEEETHHHHHHHHHTTCCEEEEE-ECSCEEEEEEECT---TSGGGTTCCSEEEEEECSEEEESS---CCTTCEEE
T ss_pred HcCCCEEEEcHHHHHHHHHhCCceEeCC-CCcccEEEEEEcc---CChhHhcCCCCcEEeehhhhHhhh---cCCCCEEE
Confidence 5689999 9999999999999999986 4678888887764 278999998888999999999976 67899999
Q ss_pred EEcCCCcEEEEEeCCCCcEEEEcCCCCCCCCCCC
Q 037843 167 AWTEDGLIMAARHKKYKHLHGVQFHPESILTSEG 200 (203)
Q Consensus 167 a~s~~~~v~a~~~~~~~~i~gvQfHPE~~~~~~g 200 (203)
|++ ++.++++++.+++ ++|+|||||++.++.|
T Consensus 167 A~s-~~~i~ai~~~~~~-i~gvQfHPE~~~~~~g 198 (218)
T 2vpi_A 167 ARS-GNIVAGIANESKK-LYGAQFHPEVGLTENG 198 (218)
T ss_dssp EEE-TTEEEEEEETTTT-EEEESSCTTSTTSTTH
T ss_pred EEc-CCeEEEEEECCCC-EEEEEcCCCCCCChhH
Confidence 999 5689999988776 9999999999987654
No 7
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}
Probab=100.00 E-value=1.3e-34 Score=256.87 Aligned_cols=179 Identities=22% Similarity=0.328 Sum_probs=149.3
Q ss_pred CCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcch--H-HHHHHH
Q 037843 11 DKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGI--S-FRTVLE 87 (203)
Q Consensus 11 ~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~--~-~~~i~~ 87 (203)
...+|+|||++++|++++.++++++ |+.+++++++ .+.+++...++||||||||++++++.+. + ..+++.
T Consensus 6 ~~~~IlilD~Gs~~~~~I~r~lre~------Gv~~eiv~~~-~~~~~i~~~~~dgIIlsGGp~s~~~~~~~~~~~~l~~~ 78 (556)
T 3uow_A 6 EYDKILVLNFGSQYFHLIVKRLNNI------KIFSETKDYG-VELKDIKDMNIKGVILSGGPYSVTEAGSPHLKKEVFEY 78 (556)
T ss_dssp -CCEEEEEESSCTTHHHHHHHHHHT------TCCEEEEETT-CCGGGTTTSCEEEEEECCCSCCTTSTTCCCCCHHHHHH
T ss_pred CCCEEEEEECCCccHHHHHHHHHHC------CCeEEEEECC-CCHHHHhhcCCCEEEECCCCCcccccCCcchhHHHHHH
Confidence 3478999999999999999999999 9999999875 5667776567899999999999886542 2 333333
Q ss_pred -hCCCCcee--ehhHHHHHHHhCCeeccccccccccceeEEEcccc----------------------------cccccc
Q 037843 88 -LGPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKE----------------------------EADGLL 136 (203)
Q Consensus 88 -~~~~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~----------------------------~~~~lf 136 (203)
..+++|+| |+|||+|+.++||+|.+.. ..++|...+.+.... ..++||
T Consensus 79 a~~~g~PvLGIC~G~QlLa~~lGG~V~~~~-~~E~G~~~l~~~~~~~~~~~p~v~~~~~~~~~mg~~~n~~~~~~~~~Lf 157 (556)
T 3uow_A 79 FLEKKIPIFGICYGMQEIAVQMNGEVKKSK-TSEYGCTDVNILRNDNINNITYCRNFGDSSSAMDLYSNYKLMNETCCLF 157 (556)
T ss_dssp HHHTTCCEEEETHHHHHHHHHTTCEEEEEE-EEEEEEEEEEECCTTGGGGCSGGGGC---CCHHHHHTTSCCCC--CGGG
T ss_pred hhhcCCCEEEECHHHHHHHHHhCCcEecCC-CcccCCcceeeccCcccccccceecccccccccccccccccccccchhh
Confidence 24679999 9999999999999999886 577888777765432 124799
Q ss_pred cCC-CCceEEeecccceeecCCCCCCCeEEEEEcCCCcEEEEEeCCCCcEEEEcCCCCCCCCCCCC
Q 037843 137 AGL-SNPFTAGRYHGLVIEKDSFRSDELEVTAWTEDGLIMAARHKKYKHLHGVQFHPESILTSEGK 201 (203)
Q Consensus 137 ~~~-~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~v~a~~~~~~~~i~gvQfHPE~~~~~~g~ 201 (203)
+++ ++.+.++++|++.|.. +|++++++|+++++.++|+++.+++ +||+|||||+++++.|.
T Consensus 158 ~gl~~~~~~v~~~H~d~V~~---lp~g~~vlA~s~~~~i~ai~~~~~~-i~GvQFHPE~~~~~~G~ 219 (556)
T 3uow_A 158 ENIKSDITTVWMNHNDEVTK---IPENFYLVSSSENCLICSIYNKEYN-IYGVQYHPEVYESLDGE 219 (556)
T ss_dssp TTCCSSEEEEEEEEEEEEEE---CCTTCEEEEEETTEEEEEEEETTTT-EEEESSCTTSTTSTTHH
T ss_pred cccccCceEEEEEccceeec---cCCCcEEEEEeCCCCEEEEEECCCC-EEEEEcCCCCCccccch
Confidence 999 8889999999999987 7899999999999999999998776 99999999999998763
No 8
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=100.00 E-value=2.3e-34 Score=254.21 Aligned_cols=172 Identities=24% Similarity=0.387 Sum_probs=146.9
Q ss_pred CcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcchHHHHHHH-hCCC
Q 037843 13 NPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGISFRTVLE-LGPT 91 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~-~~~~ 91 (203)
++|+|||++++|++++.++++++ |+.+++++++ .+.+++...++|||||||||+++++.... .+.+. ++.+
T Consensus 8 ~~IlIlD~g~~~~~~i~r~lr~~------G~~~~i~p~~-~~~~~i~~~~~dgiILsGGp~s~~~~~~~-~~~~~~~~~g 79 (525)
T 1gpm_A 8 HRILILDFGSQYTQLVARRVREL------GVYCELWAWD-VTEAQIRDFNPSGIILSGGPESTTEENSP-RAPQYVFEAG 79 (525)
T ss_dssp SEEEEEECSCTTHHHHHHHHHHT------TCEEEEEESC-CCHHHHHHHCCSEEEECCCSSCTTSTTCC-CCCGGGGTSS
T ss_pred CEEEEEECCCccHHHHHHHHHHC------CCEEEEEECC-CCHHHHhccCCCEEEECCcCccccccCCc-chHHHHHHCC
Confidence 67999999999999999999999 9999999875 56777776678999999999998765421 01122 3567
Q ss_pred Ccee--ehhHHHHHHHhCCeeccccccccccceeEEEcccccccccccCCCC--------ceEEeecccceeecCCCCCC
Q 037843 92 MPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEADGLLAGLSN--------PFTAGRYHGLVIEKDSFRSD 161 (203)
Q Consensus 92 ~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~~~--------~~~~~~~H~~~v~~~~l~~~ 161 (203)
+||| |+|||+|+.++||+|.+.. .+++|+..+.+... ++||++++. .+.++++|+|.|.. +|+
T Consensus 80 ~PvLGIC~G~Qlla~~~GG~V~~~~-~~e~G~~~v~~~~~---~~L~~~l~~~~~~~~~~~~~v~~~H~~~V~~---lp~ 152 (525)
T 1gpm_A 80 VPVFGVCYGMQTMAMQLGGHVEASN-EREFGYAQVEVVND---SALVRGIEDALTADGKPLLDVWMSHGDKVTA---IPS 152 (525)
T ss_dssp SCEEEETHHHHHHHHHHTCEEECCS-SCEEEEEEEEECSC---CTTTTTCCSEECTTSCEEEEEEEEECSEEEE---CCT
T ss_pred CCEEEEChHHHHHHHHcCCEEEeCC-CcccceEEEEeCCC---CHhhccCccccccccccceEEEEEccceeee---CCC
Confidence 9999 9999999999999999987 57889888877542 679999987 78999999999987 789
Q ss_pred CeEEEEEcCCCcEEEEEeCCCCcEEEEcCCCCCCCCCCC
Q 037843 162 ELEVTAWTEDGLIMAARHKKYKHLHGVQFHPESILTSEG 200 (203)
Q Consensus 162 ~~~~~a~s~~~~v~a~~~~~~~~i~gvQfHPE~~~~~~g 200 (203)
+++++|+++++.++|+++.+++ +||+|||||+++++.|
T Consensus 153 g~~v~A~s~~~~i~ai~~~~~~-i~gvQFHPE~~~~~~g 190 (525)
T 1gpm_A 153 DFITVASTESCPFAIMANEEKR-FYGVQFHPEVTHTRQG 190 (525)
T ss_dssp TCEEEEECSSCSCSEEEETTTT-EEEESBCTTSTTSTTH
T ss_pred CCEEEEECCCCCEEEEEECCCC-EEEEecCCCCCcchhH
Confidence 9999999999999999998776 9999999999998765
No 9
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=100.00 E-value=1.2e-34 Score=254.88 Aligned_cols=170 Identities=25% Similarity=0.365 Sum_probs=143.5
Q ss_pred cEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcchHHHHHHH-hCCCC
Q 037843 14 PIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGISFRTVLE-LGPTM 92 (203)
Q Consensus 14 ~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~-~~~~~ 92 (203)
||+|||++++|++++.++++++ |+.+++++++ .+.+++...++||||||||++++++.... ...++ ++.++
T Consensus 1 mi~ilD~g~~~~~~i~r~l~~~------G~~~~i~p~~-~~~~~i~~~~~dgiIlsGGp~s~~~~~~~-~~~~~~~~~~~ 72 (503)
T 2ywb_A 1 MVLVLDFGSQYTRLIARRLREL------RAFSLILPGD-APLEEVLKHRPQALILSGGPRSVFDPDAP-RPDPRLFSSGL 72 (503)
T ss_dssp CEEEEESSCTTHHHHHHHHHTT------TCCEEEEETT-CCHHHHHTTCCSEEEECCCSSCSSCTTCC-CCCGGGGCSSC
T ss_pred CEEEEECCCcHHHHHHHHHHHC------CCEEEEEECC-CCHHHHHhcCCCEEEECCCCchhccCCCc-chHHHHHhCCC
Confidence 5999999999999999999999 9999999876 56788876678999999999998765421 01122 35789
Q ss_pred cee--ehhHHHHHHHhCCeeccccccccccceeEEEcccccccccccCCCCceEEeecccceeecCCCCCCCeEEEEEcC
Q 037843 93 PLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAWTE 170 (203)
Q Consensus 93 Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~ 170 (203)
||| |+|||+|+.++||+|.+.. .++.|+..+.+.. ++||+++++.+.++++|+|.|.. +|++++++|+++
T Consensus 73 PvLGIC~G~Qlla~~~GG~v~~~~-~~e~G~~~v~~~~----~~l~~~~~~~~~v~~~H~~~v~~---lp~g~~v~A~s~ 144 (503)
T 2ywb_A 73 PLLGICYGMQLLAQELGGRVERAG-RAEYGKALLTRHE----GPLFRGLEGEVQVWMSHQDAVTA---PPPGWRVVAETE 144 (503)
T ss_dssp CEEEETHHHHHHHHTTTCEEECC----CEEEEECSEEC----SGGGTTCCSCCEEEEECSCEEEE---CCTTCEEEEECS
T ss_pred CEEEECHHHHHHHHHhCCeEeeCC-CCccceEEEEecC----cHHhhcCCCccEEEEECCCcccc---CCCCCEEEEEEC
Confidence 999 9999999999999999886 5678887766543 67999998889999999999987 789999999999
Q ss_pred CCcEEEEEeCCCCcEEEEcCCCCCCCCCCC
Q 037843 171 DGLIMAARHKKYKHLHGVQFHPESILTSEG 200 (203)
Q Consensus 171 ~~~v~a~~~~~~~~i~gvQfHPE~~~~~~g 200 (203)
++.++|+++.+++ +||+|||||+++++.|
T Consensus 145 ~~~i~ai~~~~~~-~~gvQFHPE~~~~~~g 173 (503)
T 2ywb_A 145 ENPVAAIASPDGR-AYGVQFHPEVAHTPKG 173 (503)
T ss_dssp SCSCSEEECTTSS-EEEESBCTTSTTSTTH
T ss_pred CCCEEEEEeCCCC-EEEEecCCCccccccc
Confidence 9999999997776 9999999999998765
No 10
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*
Probab=100.00 E-value=9.4e-33 Score=222.71 Aligned_cols=169 Identities=16% Similarity=0.180 Sum_probs=137.8
Q ss_pred CCcEEEEeCCc-hHHHHHHHHHHHhhhhhcCCceEEEEeCCccc--HHHHhccCCCEEEECCCCCCCCCc-ch---HHHH
Q 037843 12 KNPIVVIDNYD-SFTYNLCQYMGELELELSQGYHFEVYRNDELT--VAELKRKKPRGVVISPGPGAPQES-GI---SFRT 84 (203)
Q Consensus 12 ~~~i~iid~~~-~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~--~~~l~~~~~dgiil~GG~~~~~~~-~~---~~~~ 84 (203)
+++|+||++.. ....++.+++++. |+++++++.+... ++++. ++|+|||+||++++++. .. ..++
T Consensus 3 ~~~vliiqh~~~e~~~~i~~~l~~~------G~~v~v~~~~~~~~~p~~~~--~~d~lIl~GGp~~~~d~~~~~~~~~~~ 74 (250)
T 3m3p_A 3 LKPVMIIQFSASEGPGHFGDFLAGE------HIPFQVLRMDRSDPLPAEIR--DCSGLAMMGGPMSANDDLPWMPTLLAL 74 (250)
T ss_dssp CCCEEEEESSSSCCCHHHHHHHHHT------TCCEEEEEGGGTCCCCSCGG--GSSEEEECCCSSCTTSCCTTHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHC------CCeEEEEeccCCCcCcCccc--cCCEEEECCCCCcccccchHHHHHHHH
Confidence 46899998754 5578999999999 9999998754211 22333 58999999999988754 22 2455
Q ss_pred HHH-hCCCCcee--ehhHHHHHHHhCCeeccccccccccceeEEEcccccccccccCCCCceEEeecccceeecCCCCCC
Q 037843 85 VLE-LGPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSD 161 (203)
Q Consensus 85 i~~-~~~~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~~ 161 (203)
|++ +..++||| |+|||+|+.++||+|.+.+ .+++|+.++.++..+..+++| ++++.+.++++|++.| . +|+
T Consensus 75 i~~~~~~~~PvlGIC~G~Qll~~~lGG~V~~~~-~~e~G~~~v~~~~~~~~~~l~-g~~~~~~v~~~H~~~v-~---lp~ 148 (250)
T 3m3p_A 75 IRDAVAQRVPVIGHCLGGQLLAKAMGGEVTDSP-HAEIGWVRAWPQHVPQALEWL-GTWDELELFEWHYQTF-S---IPP 148 (250)
T ss_dssp HHHHHHHTCCEEEETHHHHHHHHHTTCCEEEEE-EEEEEEEEEEECSSHHHHHHH-SCSSCEEEEEEEEEEE-C---CCT
T ss_pred HHHHHHcCCCEEEECHHHHHHHHHhCCEEEeCC-CCceeeEEEEEecCCCCcccc-cCCCccEEEEEcccee-e---cCC
Confidence 665 45689999 9999999999999999987 578999888886544446789 8888999999999999 4 679
Q ss_pred CeEEEEEcCCCcEEEEEeCCCCcEEEEcCCCCCCC
Q 037843 162 ELEVTAWTEDGLIMAARHKKYKHLHGVQFHPESIL 196 (203)
Q Consensus 162 ~~~~~a~s~~~~v~a~~~~~~~~i~gvQfHPE~~~ 196 (203)
+++++|+++++.++|+++++ ++||+|||||++.
T Consensus 149 ~~~vlA~s~~~~~~a~~~~~--~~~GvQfHPE~~~ 181 (250)
T 3m3p_A 149 GAVHILRSEHCANQAYVLDD--LHIGFQCHIEMQA 181 (250)
T ss_dssp TEEEEEEETTEEEEEEEETT--TEEEESSCTTCCH
T ss_pred CCEEEEEeCCCCEEEEEECC--eeEEEEeCCcCCH
Confidence 99999999999999999987 4999999999874
No 11
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}
Probab=99.98 E-value=2.1e-32 Score=247.53 Aligned_cols=171 Identities=22% Similarity=0.321 Sum_probs=133.8
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc--hHHHHHHHhC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG--ISFRTVLELG 89 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~--~~~~~i~~~~ 89 (203)
..+|+|||++++|++++.+.++++ |+.+++++++ .+.+++...++|||||||||+++++.+ .+.+.+ ++
T Consensus 29 ~~~I~VLDfg~q~~~liar~lre~------Gv~~~ivp~~-~~~e~i~~~~~dGIILsGGp~s~~~~~~~~~~~~i--~~ 99 (697)
T 2vxo_A 29 EGAVVILDAGAQYGKVIDRRVREL------FVQSEIFPLE-TPAFAIKEQGFRAIIISGGPNSVYAEDAPWFDPAI--FT 99 (697)
T ss_dssp CCCEEEEEEC--CHHHHHHHHHHT------TCCEEEEETT-CCHHHHHHHTCSEEEEEECC-------CCCCCGGG--TT
T ss_pred CCEEEEEECCCchHHHHHHHHHHC------CCEEEEEECC-CCHHHHhhcCCCEEEECCCCCcccCccchhHHHHH--Hh
Confidence 468999999999999999999999 9999999986 567777655799999999999987532 222211 35
Q ss_pred CCCcee--ehhHHHHHHHhCCeeccccccccccceeEEEcccccccccccCCCCceEEeecccceeecCCCCCCCeEEEE
Q 037843 90 PTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTA 167 (203)
Q Consensus 90 ~~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a 167 (203)
.++||| |+|||+|+.++||++.+.. ..++|++.+.+... ++||+++++.+.++++|++.|.. +|++++++|
T Consensus 100 ~g~PvLGIC~G~QlLa~~lGG~v~~~~-~~e~G~~~v~~~~~---~~Lf~~l~~~~~v~~~H~~~V~~---lp~g~~vlA 172 (697)
T 2vxo_A 100 IGKPVLGICYGMQMMNKVFGGTVHKKS-VREDGVFNISVDNT---CSLFRGLQKEEVVLLTHGDSVDK---VADGFKVVA 172 (697)
T ss_dssp SSCCEEEEEHHHHHHHHHTTCCBCC--------CEEEEECTT---SGGGTTCCSEEEECCCSSCCBSS---CCTTCEEEE
T ss_pred CCCCEEEECHHHHHHHHHhCCeEeecC-CCccceEEEEecCC---ChhhhcCCccCcceeecccceec---CCCCeEEEE
Confidence 679999 9999999999999999887 56889988887543 68999998889999999999976 679999999
Q ss_pred EcCCCcEEEEEeCCCCcEEEEcCCCCCCCCCCC
Q 037843 168 WTEDGLIMAARHKKYKHLHGVQFHPESILTSEG 200 (203)
Q Consensus 168 ~s~~~~v~a~~~~~~~~i~gvQfHPE~~~~~~g 200 (203)
++++ .++|+++.+++ +||+|||||+++++.|
T Consensus 173 ~s~~-~i~ai~~~~~~-i~GvQFHPE~~~t~~g 203 (697)
T 2vxo_A 173 RSGN-IVAGIANESKK-LYGAQFHPEVGLTENG 203 (697)
T ss_dssp EETT-EEEEEEETTTT-EEEESSCTTSSSSTTH
T ss_pred EeCC-ceEEEEeCCCC-EEEEEecccCCCCccc
Confidence 9965 99999998877 9999999999998875
No 12
>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*
Probab=99.97 E-value=7.7e-31 Score=222.10 Aligned_cols=167 Identities=18% Similarity=0.317 Sum_probs=133.0
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHh-CC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGISFRTVLEL-GP 90 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~~-~~ 90 (203)
..+|++||++. .+++.++|+++ |+.+.+++++ .+.+++...++|||||+|||+++.+.....++++++ +.
T Consensus 190 ~~~V~viD~G~--k~ni~r~L~~~------G~~v~vvp~~-~~~e~i~~~~~DGliLsGGPgdp~~~~~~~~~Ir~~~~~ 260 (379)
T 1a9x_B 190 PFHVVAYDFGA--KRNILRMLVDR------GCRLTIVPAQ-TSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLET 260 (379)
T ss_dssp CEEEEEEESSC--CHHHHHHHHHT------TEEEEEEETT-CCHHHHHTTCCSEEEECCCSBCSTTCHHHHHHHHHHTTS
T ss_pred CCEEEEEECCC--hHHHHHHHHHC------CCEEEEEecc-CCHHHHhhcCCCEEEEeCCCCChHHHHHHHHHHHHHHHc
Confidence 35899999954 58899999999 9999999986 567777766799999999999998766667778874 66
Q ss_pred CCcee--ehhHHHHHHHhCCeeccccccccccceeEEEcccccccccccCCCCceEEeecccceeecCCCCCCCeEEEEE
Q 037843 91 TMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDELEVTAW 168 (203)
Q Consensus 91 ~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~ 168 (203)
++||| |+|||+|+.++||++.+++.++..+++++..... . ..+.+.++|++.|..+++ |++++++++
T Consensus 261 ~~PILGIClG~QLLa~A~GG~v~k~~~gh~g~n~pv~~~~~---g-------~v~its~~H~~aV~~~~L-p~~~~v~a~ 329 (379)
T 1a9x_B 261 DIPVFGICLGHQLLALASGAKTVKMKFGHHGGNHPVKDVEK---N-------VVMITAQNHGFAVDEATL-PANLRVTHK 329 (379)
T ss_dssp CCCEEEETHHHHHHHHHTTCCEEEEEEEEEEEEEEEEETTT---T-------EEEEEEEEEEEEECSTTC-CTTEEEEEE
T ss_pred CCCEEEECchHHHHHHHhCcEEEecccccccCceeeEecCC---C-------cEEEEecCccceEecccC-CCCeEEEEE
Confidence 89999 9999999999999999986443333355543221 1 123456799999976554 578999999
Q ss_pred c-CCCcEEEEEeCCCCcEEEEcCCCCCCCCCC
Q 037843 169 T-EDGLIMAARHKKYKHLHGVQFHPESILTSE 199 (203)
Q Consensus 169 s-~~~~v~a~~~~~~~~i~gvQfHPE~~~~~~ 199 (203)
+ +++.++|++++++| ++|+|||||.+..+.
T Consensus 330 s~~Dg~ieai~~~~~p-i~gVQFHPE~~~~p~ 360 (379)
T 1a9x_B 330 SLFDGTLQGIHRTDKP-AFSFQGNPEASPGPH 360 (379)
T ss_dssp ETTTCCEEEEEESSSS-EEEESSCTTCSSSCS
T ss_pred eCCCCcEEEEEECCCC-EEEEEeCCcCCCCcc
Confidence 8 68899999998877 999999999998764
No 13
>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*
Probab=99.97 E-value=1.7e-31 Score=239.80 Aligned_cols=169 Identities=22% Similarity=0.327 Sum_probs=139.7
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcch-----HHHHHH
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGI-----SFRTVL 86 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~-----~~~~i~ 86 (203)
.++|+|||++++|++++.++++++ |+.+++++++.. .++ .++|||||+|||+++++.+. ..++|+
T Consensus 446 Gk~IlviD~gdsf~~~l~~~l~~~------G~~v~Vv~~d~~--~~~--~~~DgIIlsGGPg~p~d~~~p~i~~~~~lI~ 515 (645)
T 3r75_A 446 GCRALIVDAEDHFTAMIAQQLSSL------GLATEVCGVHDA--VDL--ARYDVVVMGPGPGDPSDAGDPRIARLYAWLR 515 (645)
T ss_dssp TCEEEEEESSCTHHHHHHHHHHHT------TCEEEEEETTCC--CCG--GGCSEEEECCCSSCTTCTTSHHHHHHHHHHH
T ss_pred CCEEEEEECCccHHHHHHHHHHHC------CCEEEEEECCCc--ccc--cCCCEEEECCCCCChhhhhhhhHHHHHHHHH
Confidence 568999999999999999999999 999999987632 122 26899999999999998763 345566
Q ss_pred H-hCCCCcee--ehhHHHHHHHhCCeeccccccccccc-eeEEEcccccccccccCCCCceEEeecccceeecCCCCCCC
Q 037843 87 E-LGPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGK-ALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFRSDE 162 (203)
Q Consensus 87 ~-~~~~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~-~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~~~~ 162 (203)
+ +..++||| |+|||+|+.++||+|.+.. ...+|+ ..+.+.. ++++.+++..+.++++|.+.+.. +|++
T Consensus 516 ~a~~~~iPiLGIClG~QlLa~alGG~V~~~~-~~~~G~~~~i~~~~----~~l~~~~~~~~~v~~~h~~~~~~---lp~g 587 (645)
T 3r75_A 516 HLIDEGKPFMAVCLSHQILNAILGIPLVRRE-VPNQGIQVEIDLFG----QRERVGFYNTYVAQTVRDEMDVD---GVGT 587 (645)
T ss_dssp HHHHHTCCEEEETHHHHHHHHHTTCCEEEEE-EEEEEEEEEEEETT----EEEEEEEEEEEEEBCSCSEEEET---TTEE
T ss_pred HHHHCCCCEEEECHHHHHHHHHhCCEEEcCC-CcccccceEEeeec----CcceecCCCcEEEEEehhhcccc---CCCC
Confidence 5 46789999 9999999999999999987 456676 5665542 56888888888888888777655 6799
Q ss_pred eEEEEEcCCCcEEEEEeCCCCcEEEEcCCCCCCCCCCCC
Q 037843 163 LEVTAWTEDGLIMAARHKKYKHLHGVQFHPESILTSEGK 201 (203)
Q Consensus 163 ~~~~a~s~~~~v~a~~~~~~~~i~gvQfHPE~~~~~~g~ 201 (203)
++++|+++++.++++++++ +||+|||||++.++.|.
T Consensus 588 ~~v~A~s~dg~i~Ai~~~~---~~GVQFHPE~~~t~~G~ 623 (645)
T 3r75_A 588 VAISRDPRTGEVHALRGPT---FSSMQFHAESVLTVDGP 623 (645)
T ss_dssp EEEEECTTTCBEEEEEETT---EEEESSBTTSTTCTTHH
T ss_pred eEEEEEcCCCcEEEEEcCC---EEEEEeCCeecCCcchH
Confidence 9999999999999999874 79999999999988763
No 14
>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}
Probab=99.97 E-value=5e-31 Score=211.26 Aligned_cols=168 Identities=15% Similarity=0.173 Sum_probs=135.4
Q ss_pred CcEEEEeCCch-HHHHHHHHHHHhhhhhcCCceEEEEeCCccc--HHHHhccCCCEEEECCCCCCCCCc----ch-----
Q 037843 13 NPIVVIDNYDS-FTYNLCQYMGELELELSQGYHFEVYRNDELT--VAELKRKKPRGVVISPGPGAPQES----GI----- 80 (203)
Q Consensus 13 ~~i~iid~~~~-~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~--~~~l~~~~~dgiil~GG~~~~~~~----~~----- 80 (203)
+||++|.+... ....+.+++++. |+++.+++.+... ++++. ++|+|||+||++++.+. ..
T Consensus 1 m~i~vi~h~~~e~~g~~~~~l~~~------g~~~~~~~~~~~~~~p~~~~--~~d~lii~GGp~~~~~~~~~~~~~~~~~ 72 (236)
T 3l7n_A 1 MRIHFILHETFEAPGAYLAWAALR------GHDVSMTKVYRYEKLPKDID--DFDMLILMGGPQSPSSTKKEFPYYDAQA 72 (236)
T ss_dssp CEEEEEECCTTSCCHHHHHHHHHT------TCEEEEEEGGGTCCCCSCGG--GCSEEEECCCSSCTTCCTTTCTTCCHHH
T ss_pred CeEEEEeCCCCCCchHHHHHHHHC------CCeEEEEeeeCCCCCCCCcc--ccCEEEECCCCCCcccccccCcccchHH
Confidence 47999986543 257788999988 9999988754211 22233 68999999999997532 11
Q ss_pred HHHHHHH-hCCCCcee--ehhHHHHHHHhCCeeccccccccccceeEEEcccccccccccCCCCceEEeecccceeecCC
Q 037843 81 SFRTVLE-LGPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDS 157 (203)
Q Consensus 81 ~~~~i~~-~~~~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~ 157 (203)
..++|++ +..++||| |+|||+|+.++||+|.+.. ..++|+.++..+..++++++|++++..+.++++|++.. .
T Consensus 73 ~~~~i~~~~~~~~PvLGIClG~QlL~~~~Gg~v~~~~-~~~~G~~~v~~~~~~~~~~l~~~~~~~~~v~~~H~~~~-~-- 148 (236)
T 3l7n_A 73 EVKLIQKAAKSEKIIVGVCLGAQLMGVAYGADYLHSP-KKEIGNYLISLTEAGKMDSYLSDFSDDLLVGHWHGDMP-G-- 148 (236)
T ss_dssp HHHHHHHHHHTTCEEEEETHHHHHHHHHTTCCCEEEE-EEEEEEEEEEECTTGGGCGGGTTSCSEEEEEEEEEEEC-C--
T ss_pred HHHHHHHHHHcCCCEEEEchHHHHHHHHhCCEEecCC-CceeeeEEEEEccCcccChHHhcCCCCcEEEEecCCcc-c--
Confidence 3566776 46789999 9999999999999999987 57889988988776656889999999999999999874 3
Q ss_pred CCCCCeEEEEEcCCCcEEEEEeCCCCcEEEEcCCCCCC
Q 037843 158 FRSDELEVTAWTEDGLIMAARHKKYKHLHGVQFHPESI 195 (203)
Q Consensus 158 l~~~~~~~~a~s~~~~v~a~~~~~~~~i~gvQfHPE~~ 195 (203)
+|++++++|+++++.+++++..+ ++||+|||||++
T Consensus 149 -lp~~~~vla~s~~~~~~a~~~~~--~v~gvQfHPE~~ 183 (236)
T 3l7n_A 149 -LPDKAQVLAISQGCPRQIIKFGP--KQYAFQCHLEFT 183 (236)
T ss_dssp -CCTTCEEEEECSSCSCSEEEEET--TEEEESSBSSCC
T ss_pred -CCChheEEEECCCCCEEEEEECC--CEEEEEeCCCCC
Confidence 56899999999999999999876 499999999987
No 15
>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1
Probab=99.97 E-value=2.5e-30 Score=207.53 Aligned_cols=167 Identities=16% Similarity=0.155 Sum_probs=132.4
Q ss_pred CCcEEEEeCCc-hHHHHHHHHHHHhhhhhcCCceEEEEeCCccc--HHHHhccCCCEEEECCCCCCCCCcc------hHH
Q 037843 12 KNPIVVIDNYD-SFTYNLCQYMGELELELSQGYHFEVYRNDELT--VAELKRKKPRGVVISPGPGAPQESG------ISF 82 (203)
Q Consensus 12 ~~~i~iid~~~-~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~--~~~l~~~~~dgiil~GG~~~~~~~~------~~~ 82 (203)
..||+||.+.. .+..++.+++++. |+++.+++++... ++++. ++|||||+||++++++.. ...
T Consensus 12 ~~~~~~i~~~~~~~~~~i~~~l~~~------G~~v~v~~~~~~~~~~~~l~--~~Dglil~GG~~~~~~~~~~~~l~~~~ 83 (239)
T 1o1y_A 12 HVRVLAIRHVEIEDLGMMEDIFREK------NWSFDYLDTPKGEKLERPLE--EYSLVVLLGGYMGAYEEEKYPFLKYEF 83 (239)
T ss_dssp CCEEEEECSSTTSSCTHHHHHHHHT------TCEEEEECGGGTCCCSSCGG--GCSEEEECCCSCCTTCTTTCTHHHHHH
T ss_pred eeEEEEEECCCCCCchHHHHHHHhC------CCcEEEeCCcCccccccchh--cCCEEEECCCCccccCCccChhHHHHH
Confidence 46899997654 3467889999998 9999877754211 12233 689999999998887542 135
Q ss_pred HHHHHh-CCCCcee--ehhHHHHHHHhCCeeccccccccccceeEEEcccccccccccCCCCceEEeecccceeecCCCC
Q 037843 83 RTVLEL-GPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEADGLLAGLSNPFTAGRYHGLVIEKDSFR 159 (203)
Q Consensus 83 ~~i~~~-~~~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~v~~~~l~ 159 (203)
+++++. ++++|+| |+|||+|+.++||++.+...+++.|+.++.... .+++|+++++.+.++++|++.+. +
T Consensus 84 ~~i~~~~~~~~PiLGIC~G~QlL~~alGG~v~~~~~g~~~G~~~v~~~~---~~~l~~~~~~~~~~~~~H~~~v~----l 156 (239)
T 1o1y_A 84 QLIEEILKKEIPFLGICLGSQMLAKVLGASVYRGKNGEEIGWYFVEKVS---DNKFFREFPDRLRVFQWHGDTFD----L 156 (239)
T ss_dssp HHHHHHHHHTCCEEEETHHHHHHHHHTTCCEEECTTCCEEEEEEEEECC---CCGGGTTSCSEEEEEEEESEEEC----C
T ss_pred HHHHHHHHCCCCEEEEchhHHHHHHHcCCeEecCCCCCccccEEEEECC---CCchHHhCCCCceeEeecCCccc----c
Confidence 666663 5779999 999999999999999998733778887777543 37899999888999999999983 5
Q ss_pred CCCeEEEEEcCCCcEEEEEeCCCCcEEEEcCCCCCCC
Q 037843 160 SDELEVTAWTEDGLIMAARHKKYKHLHGVQFHPESIL 196 (203)
Q Consensus 160 ~~~~~~~a~s~~~~v~a~~~~~~~~i~gvQfHPE~~~ 196 (203)
|++++++|+++++.++++++++ ++|+|||||++.
T Consensus 157 p~~~~vlA~s~~~~iea~~~~~---i~gvQfHPE~~~ 190 (239)
T 1o1y_A 157 PRRATRVFTSEKYENQGFVYGK---AVGLQFHIEVGA 190 (239)
T ss_dssp CTTCEEEEECSSCSCSEEEETT---EEEESSBSSCCH
T ss_pred CCCCEEEEEcCCCCEEEEEECC---EEEEEeCccCCH
Confidence 6899999999998999999874 999999999863
No 16
>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}
Probab=99.97 E-value=3.4e-29 Score=202.62 Aligned_cols=158 Identities=24% Similarity=0.314 Sum_probs=120.5
Q ss_pred HHHHHHHHhhhhhcCCceEEEEeCCc-ccHHHHhccCCCEEEECCCCC-CCC--Cc---------c-----hHHHHHHH-
Q 037843 27 NLCQYMGELELELSQGYHFEVYRNDE-LTVAELKRKKPRGVVISPGPG-APQ--ES---------G-----ISFRTVLE- 87 (203)
Q Consensus 27 ~l~~~l~~~~~~~~~g~~~~v~~~~~-~~~~~l~~~~~dgiil~GG~~-~~~--~~---------~-----~~~~~i~~- 87 (203)
...++++++ |+.+.++++.. ...+++.+ ++|||||+||++ +|. .. . ...+++++
T Consensus 32 ~~~~~l~~a------G~~pv~lp~~~~~~~~~~l~-~~DGlil~GG~~v~P~~yg~~~~~~~~~~~~~rd~~~~~lir~a 104 (254)
T 3fij_A 32 RYVDAIQKV------GGFPIALPIDDPSTAVQAIS-LVDGLLLTGGQDITPQLYLEEPSQEIGAYFPPRDSYEIALVRAA 104 (254)
T ss_dssp HHHHHHHHH------TCEEEEECCCCGGGHHHHHH-TCSEEEECCCSCCCGGGGTCCCCTTCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHC------CCEEEEEeCCCchHHHHHHh-hCCEEEECCCCCCChhhcCCccCcccCCcChhhhHHHHHHHHHH
Confidence 456667776 88888887642 12333222 689999999986 222 11 0 03456666
Q ss_pred hCCCCcee--ehhHHHHHHHhCCeeccccc-------------cccccceeEEEcccccccccccCCCCceEEeecccce
Q 037843 88 LGPTMPLF--CMGLKCIGEALEGRLYVLLL-------------VSCMGKALVYYNEKEEADGLLAGLSNPFTAGRYHGLV 152 (203)
Q Consensus 88 ~~~~~Pil--ClG~Qlla~a~gg~v~~~~~-------------~~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~~H~~~ 152 (203)
+++++||| |+|||+|+.++||++.+... ..+.|++.+.+... +.||+.+++.+.++++|++.
T Consensus 105 ~~~~~PiLGIC~G~Qll~~a~Gg~v~~~~~~~~~~~~~h~~~~~~~~g~~~v~~~~~---s~l~~~~~~~~~v~~~H~~~ 181 (254)
T 3fij_A 105 LDAGKPIFAICRGMQLVNVALGGTLYQDISQVETKALQHLQRVDEQLGSHTIDIEPT---SELAKHHPNKKLVNSLHHQF 181 (254)
T ss_dssp HHTTCCEEEETHHHHHHHHHTTCCEESSGGGSSSCCCCCBCCSCTTSCCEEEEECTT---SSGGGTCCTTEEECCBCSCE
T ss_pred HHcCCCEEEECHHHHHHHHHhCCceecccccccCccccccCCCCCccceEEEEeCCC---ChHHHhcCCcEEEEEeccch
Confidence 46789999 99999999999999976520 13456778877643 67888888888999999999
Q ss_pred eecCCCCCCCeEEEEEcCCCcEEEEEeC-CCCcEEEEcCCCCCCCC
Q 037843 153 IEKDSFRSDELEVTAWTEDGLIMAARHK-KYKHLHGVQFHPESILT 197 (203)
Q Consensus 153 v~~~~l~~~~~~~~a~s~~~~v~a~~~~-~~~~i~gvQfHPE~~~~ 197 (203)
|.. ++++++++|+++++.++|++++ ++|+++|+|||||++.+
T Consensus 182 v~~---l~~g~~v~a~s~dg~ieai~~~~~~~~~~gvQfHPE~~~~ 224 (254)
T 3fij_A 182 IKK---LAPSFKVTARTADGMIEAVEGDNLPSWYLGVQWHPELMFQ 224 (254)
T ss_dssp ESS---CCSSEEEEEEETTCCEEEEEESSCSSCEEEESSCGGGTGG
T ss_pred hhc---cCCCcEEEEEeCCCcEEEEEecCCCCeEEEEEcCCccCCC
Confidence 976 6799999999999999999999 87779999999999875
No 17
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=99.96 E-value=9.4e-30 Score=200.29 Aligned_cols=161 Identities=20% Similarity=0.208 Sum_probs=111.8
Q ss_pred CCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcchHH---HHHHH
Q 037843 11 DKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGISF---RTVLE 87 (203)
Q Consensus 11 ~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~~~---~~i~~ 87 (203)
|.++|+|||++.+|..++.++|+++ |+++++++ +++++. ++|+|||+ |+|++.+..... .+++.
T Consensus 1 M~~~I~iiD~g~~n~~si~~al~~~------G~~~~v~~----~~~~l~--~~D~lilP-G~g~~~~~~~~~~~~~~i~~ 67 (211)
T 4gud_A 1 MTQNVVIIDTGCANISSVKFAIERL------GYAVTISR----DPQVVL--AADKLFLP-GVGTASEAMKNLTERDLIEL 67 (211)
T ss_dssp --CCEEEECCCCTTHHHHHHHHHHT------TCCEEEEC----CHHHHH--HCSEEEEC-CCSCHHHHHHHHHHTTCHHH
T ss_pred CCCEEEEEECCCChHHHHHHHHHHC------CCEEEEEC----CHHHHh--CCCEEEEC-CCCCHHHHHHHHHhcChHHH
Confidence 3457999999999999999999999 99998864 367777 46999995 556654432211 12333
Q ss_pred -hCCCCcee--ehhHHHHHHHhCCeeccccccccc----------------------cceeEEEcccccccccccCCCCc
Q 037843 88 -LGPTMPLF--CMGLKCIGEALEGRLYVLLLVSCM----------------------GKALVYYNEKEEADGLLAGLSNP 142 (203)
Q Consensus 88 -~~~~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~----------------------g~~~i~~~~~~~~~~lf~~~~~~ 142 (203)
.+.++||| |+|||+|+.++|+++.+... ... ++..+.. ...+++|++++..
T Consensus 68 ~~~~~~PvlGIClG~QlL~~~~g~~~~~~~~-~~~gl~~~~~~v~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~l~~~ 143 (211)
T 4gud_A 68 VKRVEKPLLGICLGMQLLGKLSEEKGQKADE-IVQCLGLVDGEVRLLQTGDLPLPHMGWNTVQV---KEGHPLFNGIEPD 143 (211)
T ss_dssp HHHCCSCEEEETHHHHTTSSEECCC----CC-CEECCCSSSCEEEECCCTTSCSSEEEEECCEE---CTTCGGGTTCCTT
T ss_pred HHHcCCCEEEEchhHhHHHHHhCCcccccCC-ccccceeccceEEEcccCCcceeeccceeeee---eccChhhcCCCCC
Confidence 24679999 99999999999988765431 111 1112222 1237799999999
Q ss_pred eEEeecccceeecCCCCCCCeEEEEEcCCCcEEEEEeCCCCcEEEEcCCCCCC
Q 037843 143 FTAGRYHGLVIEKDSFRSDELEVTAWTEDGLIMAARHKKYKHLHGVQFHPESI 195 (203)
Q Consensus 143 ~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~v~a~~~~~~~~i~gvQfHPE~~ 195 (203)
+.++++|++.+. .+..++|+++++...+....+++ +||+|||||++
T Consensus 144 ~~~~~~H~~~v~------~~~~~~a~~~~g~~~~~~v~~~~-v~GvQFHPE~s 189 (211)
T 4gud_A 144 AYFYFVHSFAMP------VGDYTIAQCEYGQPFSAAIQAGN-YYGVQFHPERS 189 (211)
T ss_dssp CCEEEEESEECC------CCTTEEEEEESSSEEEEEEEETT-EEEESSCGGGS
T ss_pred cEEEEEeeEEeC------CCCeEEEEecCCCeEEEEEeCCC-EEEEEccCEec
Confidence 999999999874 35567788877755444444455 99999999986
No 18
>2w7t_A CTP synthetase, putative cytidine triphosphate synthase; glutaminase domain, trypsanosoma brucei, ligase, acivicin; HET: 5CS; 2.10A {Trypanosoma brucei}
Probab=99.95 E-value=8.6e-28 Score=196.25 Aligned_cols=176 Identities=19% Similarity=0.185 Sum_probs=119.7
Q ss_pred CcEEEE-eC-------CchHHHHHHHHHHHhhhhhcCCceEEEEeCCccc--------H-HHHhccCCCEEEECCCCCCC
Q 037843 13 NPIVVI-DN-------YDSFTYNLCQYMGELELELSQGYHFEVYRNDELT--------V-AELKRKKPRGVVISPGPGAP 75 (203)
Q Consensus 13 ~~i~ii-d~-------~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~--------~-~~l~~~~~dgiil~GG~~~~ 75 (203)
.+|+|| |+ ++|+..+|.++..+. ++.+.+++.+..+ . +.+. ++|||||+||++++
T Consensus 9 ~~Iaivg~y~~~~~dny~S~~~aL~~~g~~~------~~~v~v~~~~~~~~~~~~~~~~~~~~~--~~dgiil~GG~~~~ 80 (273)
T 2w7t_A 9 VRIAFVGKYLQDAGDTYFSVLQCFEHCQIAL------QVRLDILYVDSEELEGPNADEARKALL--GCDGIFVPGGFGNR 80 (273)
T ss_dssp EEEEEEECCHHHHTTTTHHHHHHHHHHHHHH------TCCEEEEEEEGGGGSSTTTHHHHHHHH--TCSEEEECCCCTTT
T ss_pred CEEEEEeCCCcCCchHHHHHHHHHHHHHHhc------CCceEEeccChhhcccccchhHHHHHh--hCCEEEecCCCCCc
Confidence 688888 55 334555666666666 7777777654322 2 2233 68999999998875
Q ss_pred CCcchHHHHHHH-hCCCCcee--ehhHHHHHHHhCCeeccccc--cc-------------------------cccceeEE
Q 037843 76 QESGISFRTVLE-LGPTMPLF--CMGLKCIGEALEGRLYVLLL--VS-------------------------CMGKALVY 125 (203)
Q Consensus 76 ~~~~~~~~~i~~-~~~~~Pil--ClG~Qlla~a~gg~v~~~~~--~~-------------------------~~g~~~i~ 125 (203)
...+ ..++++. ++.++||| |+|||+|+.++||+|..... .. ..|++++.
T Consensus 81 ~~~~-~~~~i~~~~~~~~PilGIC~G~Qll~~a~Gg~v~~~~~~~s~E~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~v~ 159 (273)
T 2w7t_A 81 GVDG-KCAAAQVARMNNIPYFGVXLGMQVAVIELSRNVVGWSDANSEEFNKESTHQVVRIMDCDRNKMGANMHLGACDVY 159 (273)
T ss_dssp THHH-HHHHHHHHHHHTCCEEEETHHHHHHHHHHHHHTTCCTTCEETTTCTTCSCEEEECCGGGBCSSCBCCEEEEEEEE
T ss_pred Cchh-HHHHHHHHHHCCCcEEEECcCHHHHHHHHhCccccccCCchhhcccccCCCceeeccccccccCCcccccceEEE
Confidence 4443 3455555 35679999 99999999999999852110 00 13445555
Q ss_pred EcccccccccccCCCCceEEee--cccceeecCCC--C-CCCeEEEEEcCC----C-cEEEEEeCCCCcEEEEcCCCCCC
Q 037843 126 YNEKEEADGLLAGLSNPFTAGR--YHGLVIEKDSF--R-SDELEVTAWTED----G-LIMAARHKKYKHLHGVQFHPESI 195 (203)
Q Consensus 126 ~~~~~~~~~lf~~~~~~~~~~~--~H~~~v~~~~l--~-~~~~~~~a~s~~----~-~v~a~~~~~~~~i~gvQfHPE~~ 195 (203)
+... .+++++.++....+++ +|+|.|+++.+ + +++++++|++++ + .+++++++++|+++|+|||||++
T Consensus 160 ~~~~--~s~l~~~~~~~~~v~~~H~Hsy~v~~~~v~~l~~~g~~v~A~s~d~~~~g~~ieaie~~~~p~~~GvQfHPE~~ 237 (273)
T 2w7t_A 160 IVEK--SSIMAKIYSKSNIVVERHRHRYEVNTAYFEDLRKAGLCISAVTDPTFSSRCRVEAVENPSLRFFLAVQFHPEFI 237 (273)
T ss_dssp ECCT--TSHHHHHTTTCSEEEEEEEECCEECGGGHHHHHHTTCEEEEESCTTCCTTCCEEEEECTTSSSEEEESSCGGGS
T ss_pred EecC--CcHHHHHhCCCceEEeecccccccCHHHHHhhccCCcEEEEEcCCcCCCCCeEEEEEcCCCCeEEEEeCCCCcC
Confidence 5321 2456555554455554 67898875311 2 578999999987 5 89999999988777999999999
Q ss_pred CCCC
Q 037843 196 LTSE 199 (203)
Q Consensus 196 ~~~~ 199 (203)
.++.
T Consensus 238 ~~~~ 241 (273)
T 2w7t_A 238 STPM 241 (273)
T ss_dssp CBTT
T ss_pred CCCC
Confidence 8775
No 19
>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1
Probab=99.95 E-value=8.1e-28 Score=200.09 Aligned_cols=181 Identities=16% Similarity=0.226 Sum_probs=124.6
Q ss_pred CCcEEEEeCCch--------H---HHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhcc--CCCEEEECCCCCCCCCc
Q 037843 12 KNPIVVIDNYDS--------F---TYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRK--KPRGVVISPGPGAPQES 78 (203)
Q Consensus 12 ~~~i~iid~~~~--------~---~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~--~~dgiil~GG~~~~~~~ 78 (203)
++.|.|..+... + ..++.++|+++ |+.+.+++.+ .+.+++... ++|||||+||++++...
T Consensus 30 ~P~IGI~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------G~~~~vv~~~-~~~~~i~~~l~~~dglil~GG~~~v~p~ 102 (315)
T 1l9x_A 30 KPIIGILMQKCRNKVMKNYGRYYIAASYVKYLESA------GARVVPVRLD-LTEKDYEILFKSINGILFPGGSVDLRRS 102 (315)
T ss_dssp CCEEEEECEECCSHHHHTTCSEEEEHHHHHHHHHT------TCEEEEECSS-CCHHHHHHHHHHSSEEEECCCCCCTTTC
T ss_pred CCEEEEECCcccccccccCcceehHHHHHHHHHHC------CCEEEEEecC-CCHHHHHHHHhcCCEEEEeCCCcccChh
Confidence 467888743211 1 23577888888 9999998875 344554321 58999999999887543
Q ss_pred c------hHHHHHHHh--CC-CCcee--ehhHHHHHHHhCCeeccccccccccc-eeEEEcccccccccccCCCCc----
Q 037843 79 G------ISFRTVLEL--GP-TMPLF--CMGLKCIGEALEGRLYVLLLVSCMGK-ALVYYNEKEEADGLLAGLSNP---- 142 (203)
Q Consensus 79 ~------~~~~~i~~~--~~-~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~-~~i~~~~~~~~~~lf~~~~~~---- 142 (203)
. .+.+.+++. .. ++||| |+|||+|+.++||++.... ...+|. .++......+.++||+++++.
T Consensus 103 ~~~~~~~~l~~~~~~~~~~g~~~PiLGIC~G~Qll~~a~GG~~~~~~-~~~~g~~~p~~~~~~~~~s~L~~~~~~~~~~~ 181 (315)
T 1l9x_A 103 DYAKVAKIFYNLSIQSFDDGDYFPVWGTCLGFEELSLLISGECLLTA-TDTVDVAMPLNFTGGQLHSRMFQNFPTELLLS 181 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCEEEETHHHHHHHHHHHSSCCCEE-EEEEEEEECCEECSTTTTCSTTTTSCHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhcCCCceEEEEChHHHHHHHHhCCcccccc-ccccCCCCCeeeccCCCCChHHHhcChhhhhh
Confidence 1 133444443 22 69999 9999999999999976544 233454 456554333457899888643
Q ss_pred ----eEEeecccceeecCC-----CCCCCeEEEEEcCCCcEEEE---EeCCCCcEEEEcCCCCCCCCCCCC
Q 037843 143 ----FTAGRYHGLVIEKDS-----FRSDELEVTAWTEDGLIMAA---RHKKYKHLHGVQFHPESILTSEGK 201 (203)
Q Consensus 143 ----~~~~~~H~~~v~~~~-----l~~~~~~~~a~s~~~~v~a~---~~~~~~~i~gvQfHPE~~~~~~g~ 201 (203)
..++++|+++|.++. -++++++++|+++++.++++ ++++++ ++|+|||||+..+++|.
T Consensus 182 l~~~~~~~~~H~~~V~~~~~~~~~~l~~g~~v~A~s~dg~ve~i~~i~~~~~~-i~GVQfHPE~~~~e~~~ 251 (315)
T 1l9x_A 182 LAVEPLTANFHKWSLSVKNFTMNEKLKKFFNVLTTNTDGKIEFISTMEGYKYP-VYGVQWHPEKAPYEWKN 251 (315)
T ss_dssp HHHSCCEEEEEEEECBHHHHHTCHHHHHHEEEEEEEESSSCEEEEEEEESSSC-EEEESSCTTHHHHCCSS
T ss_pred ccccceEEEhhhhhcCccccccccccCCCCEEEEEcCCCCEEEEEEeccCCCC-EEEEEeCCCCCcccccc
Confidence 123459999997210 04579999999988876655 666666 99999999998877764
No 20
>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima}
Probab=99.95 E-value=6.6e-27 Score=184.00 Aligned_cols=167 Identities=14% Similarity=0.072 Sum_probs=125.8
Q ss_pred CCCcEEEEeCCchHH-HHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCC--------cchH
Q 037843 11 DKNPIVVIDNYDSFT-YNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQE--------SGIS 81 (203)
Q Consensus 11 ~~~~i~iid~~~~~~-~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~--------~~~~ 81 (203)
||++|+||++.+.+. .++.++|+.. |+.+.+++.++ ++. ++|+|||+||.+...+ ....
T Consensus 1 m~~~i~il~~~~~~~~~~~~~~l~~~------g~~~~~~~~~~----~~~--~~d~lil~Gg~~~~~~~~~~~~~~~~~~ 68 (213)
T 3d54_D 1 MKPRACVVVYPGSNCDRDAYHALEIN------GFEPSYVGLDD----KLD--DYELIILPGGFSYGDYLRPGAVAAREKI 68 (213)
T ss_dssp CCCEEEEECCTTEEEHHHHHHHHHTT------TCEEEEECTTC----CCS--SCSEEEECEECGGGGCSSTTHHHHTSTT
T ss_pred CCcEEEEEEcCCCCccHHHHHHHHHC------CCEEEEEecCC----Ccc--cCCEEEECCCCchhhhhccccccccHHH
Confidence 468899999988774 7788999988 99998886531 232 6899999999754332 1234
Q ss_pred HHHHHHh-CCCCcee--ehhHHHHHHH--hCCeecccccc-ccccceeEEEcccccccccccCCCC--ceEEeecc---c
Q 037843 82 FRTVLEL-GPTMPLF--CMGLKCIGEA--LEGRLYVLLLV-SCMGKALVYYNEKEEADGLLAGLSN--PFTAGRYH---G 150 (203)
Q Consensus 82 ~~~i~~~-~~~~Pil--ClG~Qlla~a--~gg~v~~~~~~-~~~g~~~i~~~~~~~~~~lf~~~~~--~~~~~~~H---~ 150 (203)
.++++++ ++++||| |+|+|+|+.+ ++|++.+.... .+.|+..+.+.. ..+++|+++++ .+.++.+| +
T Consensus 69 ~~~l~~~~~~~~pilgIC~G~qlLa~aGll~g~v~~~~~~~~~~g~~~v~~~~--~~~~l~~~~~~~~~~~~~~~H~~~s 146 (213)
T 3d54_D 69 AFEIAKAAERGKLIMGICNGFQILIEMGLLKGALLQNSSGKFICKWVDLIVEN--NDTPFTNAFEKGEKIRIPIAHGFGR 146 (213)
T ss_dssp HHHHHHHHHHTCEEEECHHHHHHHHHHTSSCSEEECCSSSSCBCCEEEEEECC--CSSTTSTTSCTTCEEEEECCBSSCE
T ss_pred HHHHHHHHHCCCEEEEECHHHHHHHHcCCCCCCeecCCCCceEeeeEEEEeCC--CCCceeeccCCCCEEEEEeecCceE
Confidence 5667663 5679999 9999999999 99999877522 256777777752 23689988875 46666689 5
Q ss_pred ceeecCCCCCCCeEEEEEcCC-----CcEEEEEeCCCCcEEEEcCCCCCCCC
Q 037843 151 LVIEKDSFRSDELEVTAWTED-----GLIMAARHKKYKHLHGVQFHPESILT 197 (203)
Q Consensus 151 ~~v~~~~l~~~~~~~~a~s~~-----~~v~a~~~~~~~~i~gvQfHPE~~~~ 197 (203)
+.+. ++++.++|++++ +.++|+++.+.+ ++|+|||||++..
T Consensus 147 ~~~~-----~~~~~~~a~~~~~ng~~~~i~a~~~~~~~-~~gvQfHPE~~~~ 192 (213)
T 3d54_D 147 YVKI-----DDVNVVLRYVKDVNGSDERIAGVLNESGN-VFGLMPHPERAVE 192 (213)
T ss_dssp EECS-----SCCEEEEEESSCSSCCGGGEEEEECSSSC-EEEECSCSTTTTS
T ss_pred EEec-----CCCcEEEEEcCCCCCCccceeEEEcCCCC-EEEEeCCHHHhcC
Confidence 5553 378999999865 489999986655 9999999999983
No 21
>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii}
Probab=99.94 E-value=2.3e-27 Score=183.21 Aligned_cols=157 Identities=17% Similarity=0.186 Sum_probs=112.7
Q ss_pred CcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc----hHHHHHHHh
Q 037843 13 NPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG----ISFRTVLEL 88 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~----~~~~~i~~~ 88 (203)
++|+|||+.+++... .++++++ |+.+.+++.+ +++. ++|||||+||++++++.. .+.+.++
T Consensus 1 m~i~vl~~~g~~~~~-~~~l~~~------G~~~~~~~~~----~~~~--~~dglil~GG~~~~~~~~~~~~~~~~~i~-- 65 (186)
T 2ywj_A 1 MIIGVLAIQGDVEEH-EEAIKKA------GYEAKKVKRV----EDLE--GIDALIIPGGESTAIGKLMKKYGLLEKIK-- 65 (186)
T ss_dssp CEEEEECSSSCCHHH-HHHHHHT------TSEEEEECSG----GGGT--TCSEEEECCSCHHHHHHHHHHTTHHHHHH--
T ss_pred CEEEEEecCcchHHH-HHHHHHC------CCEEEEECCh----HHhc--cCCEEEECCCCchhhhhhhhccCHHHHHH--
Confidence 479999998777665 4889998 9988887642 2344 579999999987654321 1234444
Q ss_pred CCCCcee--ehhHHHHHHHhCCeeccccccccccceeEEEcccc------cccccccCCCCceEEeecccceeecCCCC-
Q 037843 89 GPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKE------EADGLLAGLSNPFTAGRYHGLVIEKDSFR- 159 (203)
Q Consensus 89 ~~~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~------~~~~lf~~~~~~~~~~~~H~~~v~~~~l~- 159 (203)
+.++||| |+|||+|+.++||++.... ...+. +.....+ ..+.+|.++ +++.++++|++.|.. +
T Consensus 66 ~~~~PilGIC~G~Qll~~~~gg~~~~lg--~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~H~~~v~~---l~ 137 (186)
T 2ywj_A 66 NSNLPILGTCAGMVLLSKGTGINQILLE--LMDIT--VKRNAYGRQVDSFEKEIEFKDL-GKVYGVFIRAPVVDK---IL 137 (186)
T ss_dssp TCCCCEEEETHHHHHHSSCCSSCCCCCC--CSSEE--EETTTTCSSSCCEEEEEEETTT-EEEEEEESSCCEEEE---EC
T ss_pred hcCCcEEEECHHHHHHHHHhCCCcCccC--CCcee--EEeccCCCcccceecccccccC-CcEEEEEEecceeee---cC
Confidence 6789999 9999999999999854321 11111 1100000 113466666 678899999999976 6
Q ss_pred CCCeEEEEEcCCCcEEEEEeCCCCcEEEEcCCCCCCC
Q 037843 160 SDELEVTAWTEDGLIMAARHKKYKHLHGVQFHPESIL 196 (203)
Q Consensus 160 ~~~~~~~a~s~~~~v~a~~~~~~~~i~gvQfHPE~~~ 196 (203)
|++++++|++ ++.++|++++ +++|+|||||++.
T Consensus 138 ~~~~~v~a~s-d~~~~a~~~~---~~~gvQfHPE~~~ 170 (186)
T 2ywj_A 138 SDDVEVIARD-GDKIVGVKQG---KYMALSFHPELSE 170 (186)
T ss_dssp CTTCEEEEEE-TTEEEEEEET---TEEEESSCGGGST
T ss_pred CCCeEEEEEE-CCEEEEEeeC---CEEEEECCCCcCC
Confidence 7899999999 6789999974 4999999999875
No 22
>2v4u_A CTP synthase 2; pyrimidine biosynthesis, glutamine amidotransferase, glutaminase domain, 5-OXO-L-norleucine, DON, ligase, phosphoprotein; HET: CYD; 2.3A {Homo sapiens} PDB: 2vkt_A
Probab=99.93 E-value=2.5e-26 Score=189.00 Aligned_cols=181 Identities=14% Similarity=0.118 Sum_probs=118.9
Q ss_pred CCcEEEE-eC-CchH-HHHHHHHHHHhhhhhcCCceEEEEeCCc--c-------cHHH-------HhccCCCEEEECCCC
Q 037843 12 KNPIVVI-DN-YDSF-TYNLCQYMGELELELSQGYHFEVYRNDE--L-------TVAE-------LKRKKPRGVVISPGP 72 (203)
Q Consensus 12 ~~~i~ii-d~-~~~~-~~~l~~~l~~~~~~~~~g~~~~v~~~~~--~-------~~~~-------l~~~~~dgiil~GG~ 72 (203)
..+|+|| |+ +.+. ..++.++|++++.+ .+..+.++..+. . ++++ +. ++|||||+||+
T Consensus 25 ~~~Iavv~d~~~~~~s~~si~~~L~~~G~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~dgiil~GG~ 100 (289)
T 2v4u_A 25 ICSIALVGKYTKLRDCYASVFKALEHSALA--INHKLNLMYIDSIDLEKITETEDPVKFHEAWQKLC--KADGILVPGGF 100 (289)
T ss_dssp EEEEEEEESCSSCCGGGHHHHHHHHHHHHH--TTEEEEEEEEEGGGGSHHHHHHCHHHHHHHHHHHH--HCSEEEECSCC
T ss_pred ceEEEEEecCcCCCccHHHHHHHHHHhhhh--hCCceEEEEechhhcccccccCChhhhhhHHHHHh--hCCEEEecCCC
Confidence 3579999 88 6655 45788888887211 022344443321 1 1222 33 58999999999
Q ss_pred CCCCCcchHHHHHHHh-CCCCcee--ehhHHHHHHHhCCeeccccc--c-----------------c---------cccc
Q 037843 73 GAPQESGISFRTVLEL-GPTMPLF--CMGLKCIGEALEGRLYVLLL--V-----------------S---------CMGK 121 (203)
Q Consensus 73 ~~~~~~~~~~~~i~~~-~~~~Pil--ClG~Qlla~a~gg~v~~~~~--~-----------------~---------~~g~ 121 (203)
+++... ...++++++ +.++||| |+|||+|+.++||++.+... . + +.|+
T Consensus 101 ~~~~~~-~~~~~i~~~~~~~~PilGIC~G~Q~l~~a~Gg~v~~~~~~~~~e~~~~~~~~~i~~~~~h~~~~~~~~~~~g~ 179 (289)
T 2v4u_A 101 GIRGTL-GKLQAISWARTKKIPFLGVXLGMQLAVIEFARNCLNLKDADSTEFRPNAPVPLVIDMPEHNPGNLGGTMRLGI 179 (289)
T ss_dssp SSTTHH-HHHHHHHHHHHTTCCEEEETHHHHHHHHHHHHHHSCCTTEEESTTCTTCSEEEEEECCBCCTTCSSCBCEEEE
T ss_pred CchhHH-HHHHHHHHHHHcCCcEEEECccHHHHHHHHhccccccccCcccccCccccccceecchhhcccccCCccccce
Confidence 874432 245566663 6789999 99999999999999852110 0 0 0233
Q ss_pred eeEEEcccccccccccCCCCceEEe--ecccceeecCCC--CC-CCeEEEEEcCCCc-EEEEEeCCCCcEEEEcCCCCCC
Q 037843 122 ALVYYNEKEEADGLLAGLSNPFTAG--RYHGLVIEKDSF--RS-DELEVTAWTEDGL-IMAARHKKYKHLHGVQFHPESI 195 (203)
Q Consensus 122 ~~i~~~~~~~~~~lf~~~~~~~~~~--~~H~~~v~~~~l--~~-~~~~~~a~s~~~~-v~a~~~~~~~~i~gvQfHPE~~ 195 (203)
+++.+... .+.+++.++..+.++ +.|+|.|+++.+ ++ ++++++|+++++. ++|++++++|+++|+|||||+.
T Consensus 180 ~~v~~~~~--~s~l~~~~~~~~~v~~~H~H~y~vn~~~v~~l~~~g~~v~A~s~dg~~ieaie~~~~p~~lGvQfHPE~~ 257 (289)
T 2v4u_A 180 RRTVFKTE--NSILRKLYGDVPFIEERHRHRFEVNPNLIKQFEQNDLSFVGQDVDGDRMEIIELANHPYFVGVQFHPEFS 257 (289)
T ss_dssp EEEEESCS--CCHHHHHTTSCSEEEEEEEECEEECGGGSGGGTTSSEEEEEEETTSCSEEEEEESSSSCEEEESSBGGGG
T ss_pred EEEEEecC--CCHHHHhcCCCceEEEecccccccCHHHHHhcccCCeEEEEEcCCCCeEEEEEcCCCCeEEEEECCCCCC
Confidence 55555311 244555555434444 456777765422 45 8999999999986 9999999888667999999999
Q ss_pred CCCC
Q 037843 196 LTSE 199 (203)
Q Consensus 196 ~~~~ 199 (203)
.++.
T Consensus 258 ~~~~ 261 (289)
T 2v4u_A 258 SRPM 261 (289)
T ss_dssp CBTT
T ss_pred CCCC
Confidence 8764
No 23
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1
Probab=99.93 E-value=2.8e-26 Score=179.19 Aligned_cols=158 Identities=18% Similarity=0.174 Sum_probs=114.9
Q ss_pred CCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCc------chHHHH
Q 037843 11 DKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQES------GISFRT 84 (203)
Q Consensus 11 ~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~------~~~~~~ 84 (203)
|+++|+|||++.++..++.++|++. |+.+.+++.+ +++. ++|+|||+| ++++.+. ....++
T Consensus 1 M~~~I~iid~~~~~~~~~~~~l~~~------G~~~~~~~~~----~~l~--~~d~lil~G-~g~~~~~~~~l~~~~~~~~ 67 (200)
T 1ka9_H 1 MRMKALLIDYGSGNLRSAAKALEAA------GFSVAVAQDP----KAHE--EADLLVLPG-QGHFGQVMRAFQESGFVER 67 (200)
T ss_dssp --CEEEEECSSCSCHHHHHHHHHHT------TCEEEEESST----TSCS--SCSEEEECC-CSCHHHHHHTTSSSCTHHH
T ss_pred CccEEEEEeCCCccHHHHHHHHHHC------CCeEEEecCh----HHcc--cCCEEEECC-CCcHHHHHHHHHhcCHHHH
Confidence 3468999998877788889999998 9999888643 2333 689999955 4554221 224566
Q ss_pred HHH-hCCCCcee--ehhHHHHHHH---hC---------Ceecccc--ccccccceeEEEcccccccccccCCCCceEEee
Q 037843 85 VLE-LGPTMPLF--CMGLKCIGEA---LE---------GRLYVLL--LVSCMGKALVYYNEKEEADGLLAGLSNPFTAGR 147 (203)
Q Consensus 85 i~~-~~~~~Pil--ClG~Qlla~a---~g---------g~v~~~~--~~~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~~ 147 (203)
|++ ++.++||| |+|||+|+.+ +| +++.+.. ..++.|++.+.++. + |.+++. +.+++
T Consensus 68 i~~~~~~~~PilGIC~G~Qll~~~~~~~Gg~~~l~~~~g~v~~~~~~~~~~~G~~~v~~~~-----~-l~~~~~-~~~~~ 140 (200)
T 1ka9_H 68 VRRHLERGLPFLGICVGMQVLYEGSEEAPGVRGLGLVPGEVRRFRAGRVPQMGWNALEFGG-----A-FAPLTG-RHFYF 140 (200)
T ss_dssp HHHHHHTTCCEEECTHHHHTTSSEETTSTTCCCCCSSSSEEEECCSSSSSEEEEEECEECG-----G-GGGGTT-CEEEE
T ss_pred HHHHHHcCCeEEEEcHHHHHHHHhccccCCcCCccccccEEEECCCCCCCceeEEEEEech-----h-hhcCCC-CCEEE
Confidence 776 46789999 9999999999 68 6666553 12346776666542 3 777776 88899
Q ss_pred cccceeecCCCCCCCeEEEEEcCC-C-cEEEEEeCCCCcEEEEcCCCCCCC
Q 037843 148 YHGLVIEKDSFRSDELEVTAWTED-G-LIMAARHKKYKHLHGVQFHPESIL 196 (203)
Q Consensus 148 ~H~~~v~~~~l~~~~~~~~a~s~~-~-~v~a~~~~~~~~i~gvQfHPE~~~ 196 (203)
+|++.+ . .+++ .+ |++++ + .++++.+++ +++|+|||||++.
T Consensus 141 ~Hs~~~-~---~~~~-~v-a~s~~~g~~~~~~~~~~--~i~gvQfHPE~~~ 183 (200)
T 1ka9_H 141 ANSYYG-P---LTPY-SL-GKGEYEGTPFTALLAKE--NLLAPQFHPEKSG 183 (200)
T ss_dssp EESEEC-C---CCTT-CC-EEEEETTEEEEEEEECS--SEEEESSCTTSSH
T ss_pred eccccc-C---CCCC-cE-EEEEeCCeEEEEEEeeC--CEEEEecCCCcCc
Confidence 999999 6 3343 56 87765 5 788888876 4999999999985
No 24
>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*
Probab=99.93 E-value=1.3e-25 Score=174.67 Aligned_cols=161 Identities=22% Similarity=0.306 Sum_probs=113.9
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCc----chHHHHHHH
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQES----GISFRTVLE 87 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~----~~~~~~i~~ 87 (203)
|+||+|||+.++|...+ +++++. |+.+.+++.. +++. ++|+|||+||+..+.+. ..+.+++++
T Consensus 1 ~m~I~il~~~~~~~~~~-~~l~~~------g~~~~~~~~~----~~l~--~~d~iil~GG~~~~~~~~~~~~~~~~~i~~ 67 (196)
T 2nv0_A 1 MLTIGVLGLQGAVREHI-HAIEAC------GAAGLVVKRP----EQLN--EVDGLILPGGESTTMRRLIDTYQFMEPLRE 67 (196)
T ss_dssp CCEEEEECSSSCCHHHH-HHHHHT------TCEEEEECSG----GGGG--GCSEEEECCSCHHHHHHHHHHTTCHHHHHH
T ss_pred CcEEEEEEccCCcHHHH-HHHHHC------CCEEEEeCCh----HHHh--hCCEEEECCCChhhHHHHhhhHHHHHHHHH
Confidence 46899999988888776 888888 9988877542 2444 58999999998655431 122566666
Q ss_pred -hCCCCcee--ehhHHHHHHHhCCeeccccccccccceeEEEccc--c------cccccccCCCCceEEeecccceeecC
Q 037843 88 -LGPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEK--E------EADGLLAGLSNPFTAGRYHGLVIEKD 156 (203)
Q Consensus 88 -~~~~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~--~------~~~~lf~~~~~~~~~~~~H~~~v~~~ 156 (203)
.++++|+| |+|||+|+.++|+++.+. .|..++..... + ..+.++.++++++.++++|++.+..
T Consensus 68 ~~~~~~pilgIC~G~q~l~~~~gg~~~~~-----lg~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~h~~~v~~- 141 (196)
T 2nv0_A 68 FAAQGKPMFGTCAGLIILAKEIAGSDNPH-----LGLLNVVVERNSFGRQVDSFEADLTIKGLDEPFTGVFIRAPHILE- 141 (196)
T ss_dssp HHHTTCCEEEETHHHHHHSBCCC----CC-----CCCSCEEEECCCSCTTTSEEEEEECCTTCSSCEEEEEESCCEEEE-
T ss_pred HHHCCCcEEEECHHHHHHHHHhcCCCCCc-----ccCCceeEeccCCCcccccccCCcccccCCCceEEEEEecceecc-
Confidence 36789999 999999999999976432 23222221110 0 0134556676788899999999976
Q ss_pred CCCCCCeEEEEEcCCCcEEEEEeCCCCcEEEEcCCCCCCCC
Q 037843 157 SFRSDELEVTAWTEDGLIMAARHKKYKHLHGVQFHPESILT 197 (203)
Q Consensus 157 ~l~~~~~~~~a~s~~~~v~a~~~~~~~~i~gvQfHPE~~~~ 197 (203)
+|++++++|++ ++.+++++.. +++|+|||||++..
T Consensus 142 --~~~~~~v~a~~-d~~~~a~~~~---~~~gvQfHPE~~~~ 176 (196)
T 2nv0_A 142 --AGENVEVLSEH-NGRIVAAKQG---QFLGCSFHPELTED 176 (196)
T ss_dssp --ECTTCEEEEEE-TTEEEEEEET---TEEEESSCTTSSSC
T ss_pred --cCCCcEEEEEE-CCEEEEEEEC---CEEEEEECCccCCc
Confidence 56899999998 5778999874 49999999998754
No 25
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A
Probab=99.92 E-value=7.4e-26 Score=199.03 Aligned_cols=174 Identities=20% Similarity=0.156 Sum_probs=118.5
Q ss_pred cEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCccc-----HHHHhccCCCEEEECCCCCCCCCcchHHHHHHH-
Q 037843 14 PIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELT-----VAELKRKKPRGVVISPGPGAPQESGISFRTVLE- 87 (203)
Q Consensus 14 ~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~-----~~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~- 87 (203)
.++++|++.|+..++.++..+. |+++.+++.+... .++.. .++|||||+||+|++...+. .++++.
T Consensus 309 yv~l~D~y~Sv~~aL~~~g~~~------g~~v~I~~~d~~~~~~~~~~~~L-~~~DGIILpGGfGd~~~~g~-i~~ir~a 380 (550)
T 1vco_A 309 YVKMPDAYLSLLEALRHAGIKN------RARVEVKWVDAESLEAADLEEAF-RDVSGILVPGGFGVRGIEGK-VRAAQYA 380 (550)
T ss_dssp CC---CTTHHHHHHHHHHHHHT------TEEEEEEEEEGGGC--CCHHHHT-TTCSCEEECCCCSSTTHHHH-HHHHHHH
T ss_pred eEEEEecHHHHHHHHHHHHHHc------CCeEEEEEeCccccccchHHHHH-hcCCEEEECCCCCCcchhhh-HHHHHHH
Confidence 4567799999999998888888 9999888654321 22322 26899999999998865443 355555
Q ss_pred hCCCCcee--ehhHHHHHHHhCCeecccccc--ccc---------------------------cceeEEEcccccccccc
Q 037843 88 LGPTMPLF--CMGLKCIGEALEGRLYVLLLV--SCM---------------------------GKALVYYNEKEEADGLL 136 (203)
Q Consensus 88 ~~~~~Pil--ClG~Qlla~a~gg~v~~~~~~--~~~---------------------------g~~~i~~~~~~~~~~lf 136 (203)
.++++|+| |+|||+|+.++||++.++... .+. |++++.+. +++++
T Consensus 381 ~e~~iPiLGICLGmQlL~~a~Gg~v~~l~~~~s~E~~~~~~hpvi~~~~~q~~i~~~ggtmrlG~~~v~i~----~~s~l 456 (550)
T 1vco_A 381 RERKIPYLGICLGLQIAVIEFARNVAGLKGANSTEFDPHTPHPVIDLMPEQLEVEGLGGTMRLGDWPMRIK----PGTLL 456 (550)
T ss_dssp HHTTCCEEEETHHHHHHHHHHHHHTSCCTTCEETTTCTTCSCEEEEESCGGGCC---CCCCEEEEEEEEEC----TTSHH
T ss_pred HHCCCcEEEECcCHHHHHHHhCcccccCCccccccccCCCCCCeEEeccccccccccCCcccccceEEEEc----cCchh
Confidence 35789999 999999999999998865411 111 11122221 13344
Q ss_pred cCCCCceE--EeecccceeecC---CCCCCCeEEEEEcCCC------cEEEEEeCCCCcEEEEcCCCCCCCCCC
Q 037843 137 AGLSNPFT--AGRYHGLVIEKD---SFRSDELEVTAWTEDG------LIMAARHKKYKHLHGVQFHPESILTSE 199 (203)
Q Consensus 137 ~~~~~~~~--~~~~H~~~v~~~---~l~~~~~~~~a~s~~~------~v~a~~~~~~~~i~gvQfHPE~~~~~~ 199 (203)
..++.... ..+.|+|.|+.. .+++++++++|++.++ .+++++++++|+++|+|||||++.++.
T Consensus 457 ~~iy~~~~v~e~h~H~Y~Vns~~~~~l~~~gl~v~a~s~dG~g~~~~~VeaIe~~~~p~fvGVQFHPE~~~~p~ 530 (550)
T 1vco_A 457 HRLYGKEEVLERHRHRYEVNPLYVDGLERAGLVVSATTPGMRGRGAGLVEAIELKDHPFFLGLQSHPEFKSRPM 530 (550)
T ss_dssp HHHHCCSEEEEEEEESEEECHHHHHHHHHHTEEEEEECCCBTTBSTTCEEEEEETTSSSEEEESSCGGGGCBTT
T ss_pred hHhcCCceeeeeccceEEEchHHhhccccCCeEEEEEeCCCCccCCCcEEEEEeCCCCEEEEEEeCCccCCCCC
Confidence 33332222 356888888542 2223689999999773 899999999884449999999998875
No 26
>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B
Probab=99.92 E-value=4.2e-25 Score=172.48 Aligned_cols=158 Identities=19% Similarity=0.084 Sum_probs=109.5
Q ss_pred CcEEEEeCCchHHHHHHHHHHHhhhhhcCC-----ceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCc-c-----hH
Q 037843 13 NPIVVIDNYDSFTYNLCQYMGELELELSQG-----YHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQES-G-----IS 81 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~~~l~~~~~~~~~g-----~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~-~-----~~ 81 (203)
++|+|||++.++..++.++|+++ | +++++++..+ + .++|+|||+| ++++.+. . ..
T Consensus 1 m~I~iid~~~g~~~s~~~~l~~~------G~~~~~~~~~~~~~~~----~---~~~dglilpG-~g~~~~~~~~l~~~~~ 66 (201)
T 1gpw_B 1 MRIGIISVGPGNIMNLYRGVKRA------SENFEDVSIELVESPR----N---DLYDLLFIPG-VGHFGEGMRRLRENDL 66 (201)
T ss_dssp CEEEEECCSSSCCHHHHHHHHHH------STTBSSCEEEEECSCC----S---SCCSEEEECC-CSCSHHHHHHHHHTTC
T ss_pred CEEEEEecCCchHHHHHHHHHHc------CCCCCceEEEEECCCc----c---cCCCEEEECC-CCcHHHHHHHHHhhCH
Confidence 47999998877888999999998 8 8998887531 2 2689999966 4554322 1 13
Q ss_pred HHHHHHh-CCCCcee--ehhHHHHHHHhC--CeeccccccccccceeEEEcc-----cccccccccCCC-CceEEeeccc
Q 037843 82 FRTVLEL-GPTMPLF--CMGLKCIGEALE--GRLYVLLLVSCMGKALVYYNE-----KEEADGLLAGLS-NPFTAGRYHG 150 (203)
Q Consensus 82 ~~~i~~~-~~~~Pil--ClG~Qlla~a~g--g~v~~~~~~~~~g~~~i~~~~-----~~~~~~lf~~~~-~~~~~~~~H~ 150 (203)
.++|+++ +.++||| |+|||+|+.++| |+...+ +...|. +.... ....++++...+ ..+.++++|+
T Consensus 67 ~~~i~~~~~~~~PilGIC~G~Qll~~~~g~~G~~~~l--~~~~g~--v~~~~~~~~~~~g~~~l~~~~~~~~~~v~~~H~ 142 (201)
T 1gpw_B 67 IDFVRKHVEDERYVVGVCLGMQLLFEESEEAPGVKGL--SLIEGN--VVKLRSRRLPHMGWNEVIFKDTFPNGYYYFVHT 142 (201)
T ss_dssp HHHHHHHHHTTCEEEEETHHHHTTSSEETTEEEEECC--CSSSEE--EEECCCSSCSEEEEEEEEESSSSCCEEEEEEES
T ss_pred HHHHHHHHHcCCeEEEEChhHHHHHHhhccCCCCCCc--ceeeeE--EEEcCCCCCCcccceeeEeccCCCCCeEEEECc
Confidence 4566663 6789999 999999999997 331111 111111 11110 000034444444 5688999999
Q ss_pred ceeecCCCCCCCeEEEEEcCC-C-cEEEEEeCCCCcEEEEcCCCCCC
Q 037843 151 LVIEKDSFRSDELEVTAWTED-G-LIMAARHKKYKHLHGVQFHPESI 195 (203)
Q Consensus 151 ~~v~~~~l~~~~~~~~a~s~~-~-~v~a~~~~~~~~i~gvQfHPE~~ 195 (203)
+.|.+ + +++++|++++ + .++++++++ + ++|+|||||++
T Consensus 143 ~~v~~---~--~~~vla~s~~~g~~~~a~~~~~-~-i~gvQfHPE~~ 182 (201)
T 1gpw_B 143 YRAVC---E--EEHVLGTTEYDGEIFPSAVRKG-R-ILGFQFHPEKS 182 (201)
T ss_dssp EEEEE---C--GGGEEEEEEETTEEEEEEEEET-T-EEEESSCGGGS
T ss_pred ceecc---C--CCEEEEEEccCCceEEEEEECC-C-EEEEECCCccc
Confidence 99986 4 7899999865 5 799999876 5 99999999998
No 27
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*
Probab=99.91 E-value=6.7e-25 Score=192.81 Aligned_cols=176 Identities=19% Similarity=0.140 Sum_probs=112.5
Q ss_pred EEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHH-HHh--ccCCCEEEECCCCCCCCCcchHHHHHHH-hCCCC
Q 037843 17 VIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVA-ELK--RKKPRGVVISPGPGAPQESGISFRTVLE-LGPTM 92 (203)
Q Consensus 17 iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~-~l~--~~~~dgiil~GG~~~~~~~~~~~~~i~~-~~~~~ 92 (203)
++|++.++..+|.++.... |+.+.+++.+..+.. ++. ..++|||||+||+|++...+ ..++++. +++++
T Consensus 301 l~D~y~Si~~aL~~~G~~~------~~~V~i~~~d~e~i~~~~~~~l~~~DGIilsGGpg~~~~~g-~~~~i~~a~~~~~ 373 (545)
T 1s1m_A 301 LPDAYKSVIEALKHGGLKN------RVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFGYRGVEG-MITTARFARENNI 373 (545)
T ss_dssp SGGGGHHHHHHHHHHHHHH------TEEEEEEEEEHHHHHHHCTTTTTTCSEEEECCCCSSTTHHH-HHHHHHHHHHTTC
T ss_pred EEEHHHHHHHHHHHhCccc------CCeEEEccCCHHHhhhhhhhhhhcCCEEEECCCCCCccchh-hHHHHHHHHHCCC
Confidence 3466666555555554444 667777665421111 110 12689999999999886543 3355555 35789
Q ss_pred cee--ehhHHHHHHHhCCeecccccc--cccc---ceeEEE-c----------c-------------------ccccccc
Q 037843 93 PLF--CMGLKCIGEALEGRLYVLLLV--SCMG---KALVYY-N----------E-------------------KEEADGL 135 (203)
Q Consensus 93 Pil--ClG~Qlla~a~gg~v~~~~~~--~~~g---~~~i~~-~----------~-------------------~~~~~~l 135 (203)
|+| |+|||+|+.++||++.++... .+.+ .+++.. . . ...++++
T Consensus 374 PiLGIClG~Qll~va~Gg~v~~l~~a~s~E~~~~~~hpvi~l~~~w~~~~g~~~~q~~~~~~ggtmrlG~~~v~l~~~s~ 453 (545)
T 1s1m_A 374 PYLGICLGMQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVDDSL 453 (545)
T ss_dssp CEEEETHHHHHHHHHHHHHHHCCTTCEETTTCSSCSCEEEECTTTCCCTTSCCC----------CCEEEEEEEEECTTCH
T ss_pred cEEEECChHHHHHHHhCCceecCCCCcccccCCCCCCceEEeecccccccccccccccccccCccccccceeeEeccCCH
Confidence 999 999999999999999865421 1111 122211 1 0 0001233
Q ss_pred ccCCCCceE--EeecccceeecC---CCCCCCeEEEEEcCCC-cEEEEEeCCCCcEEEEcCCCCCCCCCC
Q 037843 136 LAGLSNPFT--AGRYHGLVIEKD---SFRSDELEVTAWTEDG-LIMAARHKKYKHLHGVQFHPESILTSE 199 (203)
Q Consensus 136 f~~~~~~~~--~~~~H~~~v~~~---~l~~~~~~~~a~s~~~-~v~a~~~~~~~~i~gvQfHPE~~~~~~ 199 (203)
+..++.... ..+.|+|.|+.. .+.+++++++|++.++ .+++++++++|+++|+|||||+..++.
T Consensus 454 l~~iyg~~~v~e~h~Hry~VNs~~~~~l~~~gl~v~a~s~dg~~VEaie~~~~p~flGVQFHPE~~~~p~ 523 (545)
T 1s1m_A 454 VRQLYNAPTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPR 523 (545)
T ss_dssp HHHHTTSSEEEEEEEECCEECHHHHHHHHHTTCEEEEECSSSCCEEEEECTTSSSEEEESSCGGGTCCTT
T ss_pred HHHhcCCceEEEecCcceEEChHHhhhcccCCeEEEEECCCCCceEEEEeCCCCEEEEEeCCCCCCCCCC
Confidence 333333333 356788888642 2224799999999887 899999999996669999999998875
No 28
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=99.91 E-value=1.3e-24 Score=188.59 Aligned_cols=175 Identities=17% Similarity=0.239 Sum_probs=115.4
Q ss_pred CCcEEEE-------eCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccH--------HHHhccCCCEEEECCCCCCCC
Q 037843 12 KNPIVVI-------DNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTV--------AELKRKKPRGVVISPGPGAPQ 76 (203)
Q Consensus 12 ~~~i~ii-------d~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~--------~~l~~~~~dgiil~GG~~~~~ 76 (203)
..+|+++ |+|.|+..+|..+..+. ++.+.+...+..+. +++. ++||||++||+|.+.
T Consensus 293 ~v~IalVGKY~~l~DaY~Sv~eAL~hag~~~------~~~V~I~wIds~~l~~~~~~~~~~L~--~~DgIIlpGG~G~~~ 364 (535)
T 3nva_A 293 TINIALVGKYTKLKDSYISIKEAIYHASAYI------GVRPKLIWIESTDLESDTKNLNEILG--NVNGIIVLPGFGSRG 364 (535)
T ss_dssp EEEEEEEESCTTSGGGGHHHHHHHHHHHHHT------TCEEEEEEEEGGGGCCSSSCCTTTTT--SCSEEEECCCCSSTT
T ss_pred eeEEEEEecCcCCchhHHHHHHHHHHHHHHc------CCCeEEEEecchhccccccchhhhcc--CCCEEEECCCCCCcc
Confidence 3568888 44445555555555555 67776654332211 2222 689999999998875
Q ss_pred CcchHHHHHHH-hCCCCcee--ehhHHHHHHHhCCeeccccc--ccc---------------------------ccceeE
Q 037843 77 ESGISFRTVLE-LGPTMPLF--CMGLKCIGEALEGRLYVLLL--VSC---------------------------MGKALV 124 (203)
Q Consensus 77 ~~~~~~~~i~~-~~~~~Pil--ClG~Qlla~a~gg~v~~~~~--~~~---------------------------~g~~~i 124 (203)
..+. .++++. .++++|+| |+|||+|+.++||++..... ..+ .|.+++
T Consensus 365 ~~g~-i~~ir~a~~~~~PiLGIClG~Qll~va~Gg~v~g~qda~s~Ef~~~~~~pvI~~m~eq~~~~~~ggtmrlg~h~v 443 (535)
T 3nva_A 365 AEGK-IKAIKYAREHNIPFLGICFGFQLSIVEFARDVLGLSEANSTEINPNTKDPVITLLDEQKNVTQLGGTMRLGAQKI 443 (535)
T ss_dssp HHHH-HHHHHHHHHHTCCEEEETHHHHHHHHHHHHTTTCCTTCEETTTCTTCSCEEEECBCSSSCBCSSCCCCEEEEEEE
T ss_pred HHHH-HHHHHHHHHcCCcEEEECcchhHHHHHhhccccCccCCcccccCCCCCCCeeecchhcccccccCCccccCceEE
Confidence 4433 455555 45789999 99999999999999953221 000 122334
Q ss_pred EEcccccccccccCCCC--ceEEeecccceeecC---CCCCCCeEEEEEcCCCcEEEEEeCCCCcEEEEcCCCCCCCCCC
Q 037843 125 YYNEKEEADGLLAGLSN--PFTAGRYHGLVIEKD---SFRSDELEVTAWTEDGLIMAARHKKYKHLHGVQFHPESILTSE 199 (203)
Q Consensus 125 ~~~~~~~~~~lf~~~~~--~~~~~~~H~~~v~~~---~l~~~~~~~~a~s~~~~v~a~~~~~~~~i~gvQfHPE~~~~~~ 199 (203)
.+.. ++++..+.. .+...++|+|.|+.. .+.++++.++|+++++.++|++++++||++|+|||||+..++.
T Consensus 444 ~l~~----gS~L~~iyG~~~I~erHrHryeVNs~h~q~l~~~GL~vsA~s~DG~IEAIE~~~~pf~vGVQfHPE~~~~p~ 519 (535)
T 3nva_A 444 ILKE----GTIAYQLYGKKVVYERHRHRYEVNPKYVDILEDAGLVVSGISENGLVEIIELPSNKFFVATQAHPEFKSRPT 519 (535)
T ss_dssp EECT----TSHHHHHHTSSEEEEEEEECCEECHHHHHHHHHTTCEEEEECTTCCEEEEECTTSSCEEEESSCGGGGCCSS
T ss_pred EEcC----CCcHHHHhCCCeeeecccccceechHHHhhcccCCeEEEEEeCCCCEEEEEeCCCCcEEEEEeCCEecCCCC
Confidence 4432 233333222 234456788888641 2335799999999999999999999998899999999988764
No 29
>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1
Probab=99.91 E-value=1.9e-24 Score=171.11 Aligned_cols=160 Identities=19% Similarity=0.252 Sum_probs=113.6
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCc----chHHHHHHH
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQES----GISFRTVLE 87 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~----~~~~~~i~~ 87 (203)
+++|+|+++.++|..+ .++|++. |+.+.+++.. +++. ++|+|||+||++...+. ....++|++
T Consensus 23 ~~~I~il~~~~~~~~~-~~~l~~~------G~~~~~~~~~----~~l~--~~Dglil~GG~~~~~~~~~~~~~~~~~i~~ 89 (219)
T 1q7r_A 23 NMKIGVLGLQGAVREH-VRAIEAC------GAEAVIVKKS----EQLE--GLDGLVLPGGESTTMRRLIDRYGLMEPLKQ 89 (219)
T ss_dssp CCEEEEESCGGGCHHH-HHHHHHT------TCEEEEECSG----GGGT--TCSEEEECCCCHHHHHHHHHHTTCHHHHHH
T ss_pred CCEEEEEeCCCCcHHH-HHHHHHC------CCEEEEECCH----HHHh--hCCEEEECCCChHHHHHHhhhhHHHHHHHH
Confidence 4689999987767654 4778887 9998887642 2343 68999999998654321 122466666
Q ss_pred -hCCCCcee--ehhHHHHHHHhCCeeccccccccccceeEEEccc--c------cccccccCCCCceEEeecccceeecC
Q 037843 88 -LGPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEK--E------EADGLLAGLSNPFTAGRYHGLVIEKD 156 (203)
Q Consensus 88 -~~~~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~--~------~~~~lf~~~~~~~~~~~~H~~~v~~~ 156 (203)
.++++||| |+|||+|+.++|+++.+. .|..++..... + ..+..+.+++.++.++++|++.|..
T Consensus 90 ~~~~~~PilGIC~G~QlL~~~~gg~~~~~-----lg~~~~~~~~~~~g~~~~~~~~~~~~~g~g~~~~~~~~h~~~v~~- 163 (219)
T 1q7r_A 90 FAAAGKPMFGTCAGLILLAKRIVGYDEPH-----LGLMDITVERNSFGRQRESFEAELSIKGVGDGFVGVFIRAPHIVE- 163 (219)
T ss_dssp HHHTTCCEEEETTHHHHHEEEEESSCCCC-----CCCEEEEEECHHHHCCCCCEEEEEEETTTEEEEEEEESSCCEEEE-
T ss_pred HHHcCCeEEEECHHHHHHHHHhCCCCcCC-----cCccceEEEecCCCccccceecCcccCCCCCceEEEEEecceeec-
Confidence 36789999 999999999999977432 22212111100 0 0022345565578888999999976
Q ss_pred CCCCCCeEEEEEcCCCcEEEEEeCCCCcEEEEcCCCCCCC
Q 037843 157 SFRSDELEVTAWTEDGLIMAARHKKYKHLHGVQFHPESIL 196 (203)
Q Consensus 157 ~l~~~~~~~~a~s~~~~v~a~~~~~~~~i~gvQfHPE~~~ 196 (203)
++++++++|++ ++.+++++.. +++|+|||||++.
T Consensus 164 --l~~~~~v~a~s-dg~~ea~~~~---~i~GvQfHPE~~~ 197 (219)
T 1q7r_A 164 --AGDGVDVLATY-NDRIVAARQG---QFLGCSFHPELTD 197 (219)
T ss_dssp --ECTTCEEEEEE-TTEEEEEEET---TEEEESSCGGGSS
T ss_pred --cCCCcEEEEEc-CCEEEEEEEC---CEEEEEECcccCC
Confidence 56899999998 6789999984 4999999999975
No 30
>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima}
Probab=99.89 E-value=1.7e-23 Score=164.37 Aligned_cols=162 Identities=15% Similarity=0.177 Sum_probs=108.9
Q ss_pred CCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCc----chHHHHHH
Q 037843 11 DKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQES----GISFRTVL 86 (203)
Q Consensus 11 ~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~----~~~~~~i~ 86 (203)
.+++|+|||+ .++...+.++|++. |+.+.+++.. +++. ++|+|||+||....++. ..+.++|+
T Consensus 19 ~~~~I~ii~~-~~~~~~~~~~l~~~------g~~~~~~~~~----~~l~--~~d~iil~GG~~~~~~~~~~~~~~~~~i~ 85 (208)
T 2iss_D 19 SHMKIGVLGV-QGDVREHVEALHKL------GVETLIVKLP----EQLD--MVDGLILPGGESTTMIRILKEMDMDEKLV 85 (208)
T ss_dssp -CCEEEEECS-SSCHHHHHHHHHHT------TCEEEEECSG----GGGG--GCSEEEECSSCHHHHHHHHHHTTCHHHHH
T ss_pred CCcEEEEEEC-CCchHHHHHHHHHC------CCEEEEeCCh----HHHh--hCCEEEECCCcHHHHHhhhhhhhHHHHHH
Confidence 3578999997 33444466778777 9988887542 3444 58999999985332221 11346666
Q ss_pred Hh-CCCCcee--ehhHHHHHHHhCCeeccccccccccceeEEEcccc--------cccccccCCC-CceEEeecccceee
Q 037843 87 EL-GPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKE--------EADGLLAGLS-NPFTAGRYHGLVIE 154 (203)
Q Consensus 87 ~~-~~~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~--------~~~~lf~~~~-~~~~~~~~H~~~v~ 154 (203)
++ ++++||| |+|||+|+.++|+...+. .|..+....... ..+..+.+++ +++.++++|++.+.
T Consensus 86 ~~~~~g~PilGIC~G~QlL~~~~gg~~~~~-----lg~~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 160 (208)
T 2iss_D 86 ERINNGLPVFATCAGVILLAKRIKNYSQEK-----LGVLDITVERNAYGRQVESFETFVEIPAVGKDPFRAIFIRAPRIV 160 (208)
T ss_dssp HHHHTTCCEEEETHHHHHHEEEEC---CCC-----CCCEEEEEETTTTCSGGGCEEEEECCGGGCSSCEEEEESSCCEEE
T ss_pred HHHHCCCeEEEECHHHHHHHHHcCCCCCCC-----ccccceEEEecCCCcccccccCCcccccCCCCceEEEEEeCcccc
Confidence 63 6789999 999999999999954221 222222211110 0123455665 57889999999987
Q ss_pred cCCCCCCCeEEEEEcCCCcEEEEEeCCCCcEEEEcCCCCCCCC
Q 037843 155 KDSFRSDELEVTAWTEDGLIMAARHKKYKHLHGVQFHPESILT 197 (203)
Q Consensus 155 ~~~l~~~~~~~~a~s~~~~v~a~~~~~~~~i~gvQfHPE~~~~ 197 (203)
. ++++++++|++ ++.+++++.. + ++|+|||||++..
T Consensus 161 ~---~~~~~~v~a~~-d~~~~a~~~~--~-i~GvQfHPE~~~~ 196 (208)
T 2iss_D 161 E---TGKNVEILATY-DYDPVLVKEG--N-ILACTFHPELTDD 196 (208)
T ss_dssp E---ECSSCEEEEEE-TTEEEEEEET--T-EEEESSCGGGSSC
T ss_pred c---CCCCcEEEEEE-CCEEEEEEEC--C-EEEEEeCCCcCCc
Confidence 6 56899999998 5889999874 3 9999999999764
No 31
>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=99.89 E-value=9.9e-24 Score=163.23 Aligned_cols=160 Identities=18% Similarity=0.199 Sum_probs=108.5
Q ss_pred CCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCC-CC---cchHHHHHH
Q 037843 11 DKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAP-QE---SGISFRTVL 86 (203)
Q Consensus 11 ~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~-~~---~~~~~~~i~ 86 (203)
|+++|.|+...+ ....+.+++++. |+.+.++++. +++. ++|||||+||+... .+ ...+.++++
T Consensus 1 ~~p~Igi~~~~~-~~~~~~~~l~~~------G~~~~~~~~~----~~l~--~~dglil~GG~~~~~~~~~~~~~~~~~i~ 67 (191)
T 2ywd_A 1 MRGVVGVLALQG-DFREHKEALKRL------GIEAKEVRKK----EHLE--GLKALIVPGGESTTIGKLAREYGIEDEVR 67 (191)
T ss_dssp --CCEEEECSSS-CHHHHHHHHHTT------TCCCEEECSG----GGGT--TCSEEEECSSCHHHHHHHHHHTTHHHHHH
T ss_pred CCcEEEEEecCC-chHHHHHHHHHC------CCEEEEeCCh----hhhc--cCCEEEECCCChhhhHHhhhhhhHHHHHH
Confidence 368899997654 345678888888 9988887642 2344 58999999995321 11 122356666
Q ss_pred Hh-CCC-Ccee--ehhHHHHHHHhCC-eeccccccccccceeEEEccc--cc------ccccccCCCCceEEeeccccee
Q 037843 87 EL-GPT-MPLF--CMGLKCIGEALEG-RLYVLLLVSCMGKALVYYNEK--EE------ADGLLAGLSNPFTAGRYHGLVI 153 (203)
Q Consensus 87 ~~-~~~-~Pil--ClG~Qlla~a~gg-~v~~~~~~~~~g~~~i~~~~~--~~------~~~lf~~~~~~~~~~~~H~~~v 153 (203)
++ +++ +||| |+|||+|+.++|+ ++.+. .|..+...... +. .+..+.++ .++.++++|++.+
T Consensus 68 ~~~~~~~~PilGiC~G~Q~l~~~~gg~~~~~~-----lg~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~Hs~~v 141 (191)
T 2ywd_A 68 KRVEEGSLALFGTCAGAIWLAKEIVGYPEQPR-----LGVLEAWVERNAFGRQVESFEEDLEVEGL-GSFHGVFIRAPVF 141 (191)
T ss_dssp HHHHTTCCEEEEETHHHHHHEEEETTCTTCCC-----CCCEEEEEETTCSCCSSSEEEEEEEETTT-EEEEEEEESCCEE
T ss_pred HHHHCCCCeEEEECHHHHHHHHHhCCCCCCcc-----ccccceEEEcCCcCCccccccccccccCC-CceeEEEEcccce
Confidence 63 567 9999 9999999999998 54322 12211111100 00 02234445 5678889999998
Q ss_pred ecCCCCCCCeEEEEEcCCCcEEEEEeCCCCcEEEEcCCCCCCC
Q 037843 154 EKDSFRSDELEVTAWTEDGLIMAARHKKYKHLHGVQFHPESIL 196 (203)
Q Consensus 154 ~~~~l~~~~~~~~a~s~~~~v~a~~~~~~~~i~gvQfHPE~~~ 196 (203)
.. ++++++++|++ ++.++++++++ ++|+|||||.+.
T Consensus 142 ~~---l~~~~~~~a~~-~~~~~a~~~~~---~~gvQfHPE~~~ 177 (191)
T 2ywd_A 142 RR---LGEGVEVLARL-GDLPVLVRQGK---VLASSFHPELTE 177 (191)
T ss_dssp EE---ECTTCEEEEEE-TTEEEEEEETT---EEEESSCGGGSS
T ss_pred ec---cCCCcEEEEEE-CCEEEEEEECC---EEEEEeCCCCCC
Confidence 75 56899999999 58899999863 999999999764
No 32
>2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis, amino-acid biosynthesis, homoserine transacetylase, homoserine transsuccinylase; 2.00A {Bacillus cereus} PDB: 2ghr_A
Probab=99.88 E-value=6.7e-22 Score=162.66 Aligned_cols=174 Identities=17% Similarity=0.116 Sum_probs=118.0
Q ss_pred CCcEEEEeCCchH---HHHHHHHHHHhhhhhcCCceEEEEeCCc-c--------------cHHHHhccCCCEEEECCCCC
Q 037843 12 KNPIVVIDNYDSF---TYNLCQYMGELELELSQGYHFEVYRNDE-L--------------TVAELKRKKPRGVVISPGPG 73 (203)
Q Consensus 12 ~~~i~iid~~~~~---~~~l~~~l~~~~~~~~~g~~~~v~~~~~-~--------------~~~~l~~~~~dgiil~GG~~ 73 (203)
.+||+||+.-... ..++.+.|... ...++++.+.... . +.+++...+|||+||+|||.
T Consensus 35 plkI~ILnlmp~k~~te~qf~rlL~~~----~~qv~v~~~~~~~~~~~~~~~~hl~~~y~~f~~~~~~~~DglIITGap~ 110 (301)
T 2vdj_A 35 ALKIAILNLMPTKQETEAQLLRLIGNT----PLQLDVHLLHMESHLSRNVAQEHLTSFYKTFRDIENEKFDGLIITGAPV 110 (301)
T ss_dssp CEEEEEECCCSSHHHHHHHHHHHHTCS----SSCEEEEEECCCC------------CCEECHHHHTTSCEEEEEECCCTT
T ss_pred CceEEEEeCCCCcCchHHHHHHHhcCC----CCcEEEEEEeccCCCCCCccHHHHhhcccCcccccccccCEEEECCCCC
Confidence 3689999875432 33455555443 1123444443321 1 35555445799999999997
Q ss_pred CCCCc---ch---HHHHHHHh-CCCCcee--ehhHHHHHHHhCC-eeccccccccccceeEEEcccccccccccCCCCce
Q 037843 74 APQES---GI---SFRTVLEL-GPTMPLF--CMGLKCIGEALEG-RLYVLLLVSCMGKALVYYNEKEEADGLLAGLSNPF 143 (203)
Q Consensus 74 ~~~~~---~~---~~~~i~~~-~~~~Pil--ClG~Qlla~a~gg-~v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~~~~~ 143 (203)
...+. .. +.++++.. .+.+|+| |+|+|+++.++|| .....+ ..+.|..++..+. ..++||+++++.|
T Consensus 111 ~~~~~ed~~yw~el~~li~~~~~~~~~~lgIC~GaQ~~l~~~~G~~k~~~~-~K~~Gv~~~~~~~--~~~pL~~g~~~~f 187 (301)
T 2vdj_A 111 ETLSFEEVDYWEELKRIMEYSKTNVTSTLHICWGAQAGLYHHYGVQKYPLK-EKMFGVFEHEVRE--QHVKLLQGFDELF 187 (301)
T ss_dssp TTSCGGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHHCCCCEEEE-EEEEEEEEEEECC--SSCGGGTTCCSEE
T ss_pred cCCCcccCchHHHHHHHHHHHHHcCCcEEEEcHHHHHHHHHhCCCccccCC-CCEEEEEEEEecC--CCCccccCCCCce
Confidence 65432 22 23444443 5779999 9999997776666 333433 5677877766643 4588999999888
Q ss_pred EEeec-----ccceeecCCCCCCCeEEEEEcCCCcEEEEEeCCCCcEEEEcCCCCCCCC
Q 037843 144 TAGRY-----HGLVIEKDSFRSDELEVTAWTEDGLIMAARHKKYKHLHGVQFHPESILT 197 (203)
Q Consensus 144 ~~~~~-----H~~~v~~~~l~~~~~~~~a~s~~~~v~a~~~~~~~~i~gvQfHPE~~~~ 197 (203)
.+.++ |.+.|.. + ++++++|.|+.+.++++..++.+ ++++|||||++..
T Consensus 188 ~~phsr~~~~~~~~v~~---~-pga~vLA~S~~~~~~~~~~~~~~-~~~vQgHpEyd~~ 241 (301)
T 2vdj_A 188 FAVHSRHTEVRESDIRE---V-KELTLLANSEEAGVHLVIGQEGR-QVFALGHSEYSCD 241 (301)
T ss_dssp EEEEEEEEECCHHHHHT---C-TTEEEEEEETTTEEEEEEEGGGT-EEEECSCTTCCTT
T ss_pred EeeeEeccCcCHHHccC---C-CCCEEEEeCCCCcceEEEecCCC-EEEEECCCCCCHH
Confidence 88876 4455654 4 49999999999999999996655 9999999999764
No 33
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=99.87 E-value=7.2e-24 Score=188.21 Aligned_cols=166 Identities=17% Similarity=0.153 Sum_probs=118.3
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc------hHHHHH
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG------ISFRTV 85 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~------~~~~~i 85 (203)
|++|+|||+++++..++.++++++ |+.+.+++..+ . ..+. ++|||||+|| |++.... ...+++
T Consensus 4 m~~I~Iid~~~g~~~~~~~~l~~~------G~~~~vv~~~~-~-~~l~--~~DglILpGg-G~~~~~~~~l~~~~~~~~i 72 (555)
T 1jvn_A 4 MPVVHVIDVESGNLQSLTNAIEHL------GYEVQLVKSPK-D-FNIS--GTSRLILPGV-GNYGHFVDNLFNRGFEKPI 72 (555)
T ss_dssp SCEEEEECCSCSCCHHHHHHHHHT------TCEEEEESSGG-G-CCST--TCSCEEEEEC-SCHHHHHHHHHHTTCHHHH
T ss_pred CCEEEEEECCCCCHHHHHHHHHHC------CCEEEEECCcc-c-cccc--cCCEEEECCC-CchHhHhhhhhhccHHHHH
Confidence 578999999878888999999998 99988876421 1 1133 6899999663 4433211 134556
Q ss_pred HH-hCCCCcee--ehhHHHHHHHh------------CCeeccccc----cccccceeEEEcccccccccccCCCCceEEe
Q 037843 86 LE-LGPTMPLF--CMGLKCIGEAL------------EGRLYVLLL----VSCMGKALVYYNEKEEADGLLAGLSNPFTAG 146 (203)
Q Consensus 86 ~~-~~~~~Pil--ClG~Qlla~a~------------gg~v~~~~~----~~~~g~~~i~~~~~~~~~~lf~~~~~~~~~~ 146 (203)
++ +..++|+| |+|||+|+.++ |+++.+... .+++|++.+... +++|+++++.+.++
T Consensus 73 ~~~~~~g~PiLGIC~G~QlL~~a~~egg~~~~Lg~lgg~v~~~~~~~~~~~~~G~~~v~~~-----~~L~~~l~~~~~~~ 147 (555)
T 1jvn_A 73 REYIESGKPIMGIXVGLQALFAGSVESPKSTGLNYIDFKLSRFDDSEKPVPEIGWNSCIPS-----ENLFFGLDPYKRYY 147 (555)
T ss_dssp HHHHHTTCCEEEEEHHHHTTEEEETTBTTCCCCCSEEEEEEECCTTTSCSSEEEEECCCCC-----TTCCTTCCTTSCEE
T ss_pred HHHHHcCCcEEEEchhhhhhhhhhhcCCCccccCCCCcEEEECCcCCCCCccccceEEEEc-----CHHHhhCCCCceEE
Confidence 65 36789999 99999999998 677765431 134566555432 67999998777788
Q ss_pred ecccceeecCC----CCCCCeEEEEEcC---CCcEEEEEeCCCCcEEEEcCCCCCCC
Q 037843 147 RYHGLVIEKDS----FRSDELEVTAWTE---DGLIMAARHKKYKHLHGVQFHPESIL 196 (203)
Q Consensus 147 ~~H~~~v~~~~----l~~~~~~~~a~s~---~~~v~a~~~~~~~~i~gvQfHPE~~~ 196 (203)
++|++++.... ++++++.++|+++ ++.+++++.. ++||+|||||.+.
T Consensus 148 ~vHS~~~~~i~~~~~~L~~g~~vlA~s~~~~D~~i~ai~~~---~i~GvQFHPE~s~ 201 (555)
T 1jvn_A 148 FVHSFAAILNSEKKKNLENDGWKIAKAKYGSEEFIAAVNKN---NIFATQFHPEKSG 201 (555)
T ss_dssp EEESEECBCCHHHHHHHHHTTCEEEEEEETTEEEEEEEEET---TEEEESSBGGGSH
T ss_pred EEEEEEEEecccccccCCCCCEEEEEEcCCCCCeEEEEEeC---CEEEEEeCcEecC
Confidence 89999885411 0135688888886 3578999853 4999999999763
No 34
>2h2w_A Homoserine O-succinyltransferase; TM0881, (EC 2.3.1.46), HOM O-transsuccinylase, HTS, (TM0881), structural genomics; 2.52A {Thermotoga maritima}
Probab=99.87 E-value=1e-21 Score=161.95 Aligned_cols=176 Identities=15% Similarity=0.086 Sum_probs=117.4
Q ss_pred CCcEEEEeCCch---HHHHHHHHHHHhhhhhcCCceEE--EEeCCc-c--------------cHHHHhccCCCEEEECCC
Q 037843 12 KNPIVVIDNYDS---FTYNLCQYMGELELELSQGYHFE--VYRNDE-L--------------TVAELKRKKPRGVVISPG 71 (203)
Q Consensus 12 ~~~i~iid~~~~---~~~~l~~~l~~~~~~~~~g~~~~--v~~~~~-~--------------~~~~l~~~~~dgiil~GG 71 (203)
.+||+||+.-.. +..++.+.|... +..++ .+.... . +.+++...+|||+||+||
T Consensus 47 plkI~ILnlmp~k~~te~qf~rlL~~~------~~qv~v~~~~~~~~~~~~~~~~hl~~~y~~f~~~~~~~~DglIITGs 120 (312)
T 2h2w_A 47 PLEILILNLMPDKIKTEIQLLRLLGNT------PLQVNVTLLYTETHKPKHTPIEHILKFYTTFSAVKDRKFDGFIITGA 120 (312)
T ss_dssp CEEEEEECCCSSHHHHHHHHHHHHHSS------SSCEEEEEECCSCCCCCSSCHHHHHHHCBCGGGTTTCCEEEEEECCC
T ss_pred CceEEEEeCCCCcCchHHHHHHHhcCC------CCcEEEEEEEccCCCCCCccHHHHhhccCCcccccccCcCEEEECCC
Confidence 368999986543 334566666554 44444 443321 1 233333347999999999
Q ss_pred CCCCCCc---chH---HHHHHHh-CCCCcee--ehhHHHHHHHhCCeeccccccccccceeEEEcccccccccccCCCCc
Q 037843 72 PGAPQES---GIS---FRTVLEL-GPTMPLF--CMGLKCIGEALEGRLYVLLLVSCMGKALVYYNEKEEADGLLAGLSNP 142 (203)
Q Consensus 72 ~~~~~~~---~~~---~~~i~~~-~~~~Pil--ClG~Qlla~a~gg~v~~~~~~~~~g~~~i~~~~~~~~~~lf~~~~~~ 142 (203)
|....+. ..+ .++++.. .+.+|+| |+|+|+++.++||.......+.+.|..++..+. .++|++++++.
T Consensus 121 P~~~~~~ed~~yw~el~~li~~~~~~~~p~LGIC~GaQ~~l~~~~G~~k~~~~~K~~Gv~~~~~~~---~~pL~~g~~~~ 197 (312)
T 2h2w_A 121 PVELLPFEEVDYWEELTEIMEWSRHNVYSTMFICWAAQAGLYYFYGIPKYELPQKLSGVYKHRVAK---DSVLFRGHDDF 197 (312)
T ss_dssp SCTTSCGGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHHCCCCEEEEEEEEEEEEEEESS---CCGGGTTCCSE
T ss_pred CCCCCCCccCchHHHHHHHHHHHHHcCCcEEEECHHHHHHHHHhCCCccccCCCCEEEEEEEEEcC---CCccccCCCCc
Confidence 9765432 222 3444443 5779999 999999777776643333225677887777664 48899999998
Q ss_pred eEEeecccceeecCCC-CCCCeEEEEEcCCCcEEEEEeCCCCcEEEEcCCCCCCCC
Q 037843 143 FTAGRYHGLVIEKDSF-RSDELEVTAWTEDGLIMAARHKKYKHLHGVQFHPESILT 197 (203)
Q Consensus 143 ~~~~~~H~~~v~~~~l-~~~~~~~~a~s~~~~v~a~~~~~~~~i~gvQfHPE~~~~ 197 (203)
|.+.++|...+..+.+ .+++++++|.|+.+.++++..++.+ ++++|||||++..
T Consensus 198 f~vphsr~~e~~~~~v~~~pga~vLA~S~~~~~q~~~~~~~~-~~~vQgHPEyd~~ 252 (312)
T 2h2w_A 198 FWAPHSRYTEVKKEDIDKVPELEILAESDEAGVYVVANKSER-QIFVTGHPEYDRY 252 (312)
T ss_dssp EEEEEEEEEECCHHHHTTCC-CEEEEEETTTEEEEEECSSSS-EEEECSCTTCCTT
T ss_pred eEeeEEeccccCHHHccCCCCCEEEEcCCCCcceEEEecCCC-EEEEECCCCCCHH
Confidence 9888875433322111 1259999999999999999986655 9999999999764
No 35
>2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria, transferase; HET: PG4; 1.62A {Plasmodium falciparum} SCOP: c.23.16.1 PDB: 4ads_G
Probab=99.82 E-value=2.2e-20 Score=148.38 Aligned_cols=169 Identities=19% Similarity=0.193 Sum_probs=108.4
Q ss_pred CcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCC---c---chHHHHHH
Q 037843 13 NPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQE---S---GISFRTVL 86 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~---~---~~~~~~i~ 86 (203)
++|+|+++.+.|.. ..++|+.+ ...|+.+.+++. .+++. ++|||||+||+.+..+ . ..+.+.|+
T Consensus 4 ~~I~Il~~~~~~~~-~~~~l~~~---~~~G~~~~~~~~----~~~l~--~~dglil~GG~~~~~~~~~~~d~~~~~~~i~ 73 (227)
T 2abw_A 4 ITIGVLSLQGDFEP-HINHFIKL---QIPSLNIIQVRN----VHDLG--LCDGLVIPGGESTTVRRCCAYENDTLYNALV 73 (227)
T ss_dssp EEEEEECTTSCCHH-HHHHHHTT---CCTTEEEEEECS----HHHHH--TCSEEEECCSCHHHHHHHTTHHHHHHHHHHH
T ss_pred cEEEEEeCCCCcHH-HHHHHHHh---ccCCeEEEEEcC----ccccc--cCCEEEECCCcHHHHHHHHHHhHHHHHHHHH
Confidence 67899988755543 34455443 012666666542 35565 5899999999754321 1 12355666
Q ss_pred H-hCC-CCcee--ehhHHHHHHHhCCeecccc--ccccccceeEEEcccc--c------ccccccCC----CCceEEeec
Q 037843 87 E-LGP-TMPLF--CMGLKCIGEALEGRLYVLL--LVSCMGKALVYYNEKE--E------ADGLLAGL----SNPFTAGRY 148 (203)
Q Consensus 87 ~-~~~-~~Pil--ClG~Qlla~a~gg~v~~~~--~~~~~g~~~i~~~~~~--~------~~~lf~~~----~~~~~~~~~ 148 (203)
+ ++. ++||| |+|||+|+.++|+.+.... .....|..++...... . ....+.++ ...+..++.
T Consensus 74 ~~~~~~g~PilGIC~G~QlL~~~~gg~~~~~~~~~~~~lG~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 153 (227)
T 2abw_A 74 HFIHVLKKPIWGTCAGCILLSKNVENIKLYSNFGNKFSFGGLDITICRNFYGSQNDSFICSLNIISDSSAFKKDLTAACI 153 (227)
T ss_dssp HHHHTSCCCEEEETHHHHHTEEEEECCCSCCTTGGGSCCCCEEEEEECCC----CCEEEEECEECCCCTTCCTTCEEEEE
T ss_pred HHHHhcCCEEEEECHHHHHHHHHhcCCccccccccccccCceeEEEEecCCCccccccccccccccccccCCCceeEEEE
Confidence 6 466 89999 9999999999999863310 0123444333322110 0 01123333 356777888
Q ss_pred ccceeecCCCC-CCCeEEEEEcC-----CCcEEEEEeCCCCcEEEEcCCCCCCCC
Q 037843 149 HGLVIEKDSFR-SDELEVTAWTE-----DGLIMAARHKKYKHLHGVQFHPESILT 197 (203)
Q Consensus 149 H~~~v~~~~l~-~~~~~~~a~s~-----~~~v~a~~~~~~~~i~gvQfHPE~~~~ 197 (203)
|++.|.. + +++++++|+++ ++.+++++.. +++|+|||||.+..
T Consensus 154 h~~~v~~---~~~~~~~vla~~~~~~~g~~~~~a~~~~---~v~gvQfHPE~~~~ 202 (227)
T 2abw_A 154 RAPYIRE---ILSDEVKVLATFSHESYGPNIIAAVEQN---NCLGTVFHPELLPH 202 (227)
T ss_dssp SCCEEEE---ECCTTCEEEEEEEETTTEEEEEEEEEET---TEEEESSCGGGSSC
T ss_pred EcceEee---cCCCCcEEEEEcccccCCCCceEEEEEC---CEEEEEECCeeCCC
Confidence 9998875 4 68999999985 5778899874 49999999998754
No 36
>3ugj_A Phosphoribosylformylglycinamidine synthase; amidotransferase, glutaminase, thioester intermediate, ligas; HET: ADP; 1.78A {Salmonella enterica subsp} PDB: 1t3t_A* 3ujn_A* 3umm_A*
Probab=99.06 E-value=5.1e-10 Score=106.99 Aligned_cols=179 Identities=14% Similarity=0.142 Sum_probs=108.7
Q ss_pred CCCcEEEEeCCchHH-HHHHHHHHHhhhhhcCCceEEEEeCCc--ccHHHHhccCCCEEEECCCCCCCC--Ccch-----
Q 037843 11 DKNPIVVIDNYDSFT-YNLCQYMGELELELSQGYHFEVYRNDE--LTVAELKRKKPRGVVISPGPGAPQ--ESGI----- 80 (203)
Q Consensus 11 ~~~~i~iid~~~~~~-~~l~~~l~~~~~~~~~g~~~~v~~~~~--~~~~~l~~~~~dgiil~GG~~~~~--~~~~----- 80 (203)
.++||+||++..++. ..+.++|+.+ |..+.+++..+ ...+++. ++|+|||+||..... ..+.
T Consensus 1046 ~~pkVaIi~~~G~N~~~~~~~A~~~a------G~~~~~v~~~dl~~~~~~l~--~~d~lvlPGGfSygD~l~~g~~~a~~ 1117 (1303)
T 3ugj_A 1046 ARPKVAVLREQGVNSHVEMAAAFHRA------GFDAIDVHMSDLLGGRIGLG--NFHALVACGGFSYGDVLGAGEGWAKS 1117 (1303)
T ss_dssp CCCEEEEEECTTCCCHHHHHHHHHHT------TCEEEEEEHHHHHTTSCCGG--GCSEEEECCSCGGGGTTSTTHHHHHH
T ss_pred CCCEEEEEecCCcCCHHHHHHHHHHh------CCceEEEeecccccCcccHh--hCCEEEECCCCcchhhhccchhHHHH
Confidence 478999999977774 7889999998 99887765311 0112333 589999999853211 1111
Q ss_pred ------HHHHHHH-h-CCCCcee--ehhHHHHHHH---hCCe-----eccccccc-cccceeEEEcccccccccccCCC-
Q 037843 81 ------SFRTVLE-L-GPTMPLF--CMGLKCIGEA---LEGR-----LYVLLLVS-CMGKALVYYNEKEEADGLLAGLS- 140 (203)
Q Consensus 81 ------~~~~i~~-~-~~~~Pil--ClG~Qlla~a---~gg~-----v~~~~~~~-~~g~~~i~~~~~~~~~~lf~~~~- 140 (203)
+.+.+++ + .+++|+| |.|||+|+++ +.|. +.++.... +--+..+++. ..++++++++.
T Consensus 1118 ~l~~~~l~~~l~~~~~~~g~pvLGICnG~QlL~e~~gllPg~~~~p~l~~N~s~~f~~r~~~~~v~--~~~s~~~~~~~g 1195 (1303)
T 3ugj_A 1118 ILFNHRVRDEFETFFHRPQTLALGVCNGCQMMSNLRELIPGSELWPRFVRNHSDRFEARFSLVEVT--QSPSLLLQGMVG 1195 (1303)
T ss_dssp HHTSHHHHHHHHHHHHSSSCEEEEETHHHHHHHTTGGGSTTCTTCCEEECCTTSSCEEEEEEEEEC--CCSCGGGTTCTT
T ss_pred HHhchhHHHHHHHHHHhCCCcEEEECHHHHHHHHhcCcCCCCCCCCeEecCCCCCeEEeCeEEEEC--CCCChhhhccCC
Confidence 2344555 3 5789999 9999999986 2232 33332111 1112334443 23467888875
Q ss_pred CceEEeeccccee---ec-C---CCCCCCeEEEEEc-------------CCC---cEEEEEeCCCCcEEEEcCCCCCCCC
Q 037843 141 NPFTAGRYHGLVI---EK-D---SFRSDELEVTAWT-------------EDG---LIMAARHKKYKHLHGVQFHPESILT 197 (203)
Q Consensus 141 ~~~~~~~~H~~~v---~~-~---~l~~~~~~~~a~s-------------~~~---~v~a~~~~~~~~i~gvQfHPE~~~~ 197 (203)
..+.+.-.|++.= .. + .|...+..++-+. .++ .|+++...+.+ ++|...||||...
T Consensus 1196 ~~~~i~vaHgEG~~~~~~~~~l~~l~~~~~v~~rY~d~~g~~~~~yp~NPNGS~~~IaGi~s~~Gr-vlg~MpHPEr~~~ 1274 (1303)
T 3ugj_A 1196 SQMPIAVSHGEGRVEVRDDAHLAALESKGLVALRYVDNFGKVTETYPANPNGSPNGITAVTTENGR-VTIMMPHPERVFR 1274 (1303)
T ss_dssp CEEEEEEEESSCEEECSSHHHHHHHHHTTCEEEEEBCTTSCBCCSTTTSSSCCGGGEEEEECTTSS-EEEESSBGGGSSB
T ss_pred CEEeeeeEeCCCCeeeCCHHHHHHHHhCCcEEEEEeCCCCCcccCCCCCCCCChhhceEeECCCCC-EEEEcCChHHccc
Confidence 3466666776432 11 1 1112333333332 222 48999999987 9999999999876
Q ss_pred CCC
Q 037843 198 SEG 200 (203)
Q Consensus 198 ~~g 200 (203)
.+.
T Consensus 1275 ~~~ 1277 (1303)
T 3ugj_A 1275 TVA 1277 (1303)
T ss_dssp GGG
T ss_pred ccc
Confidence 553
No 37
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=98.45 E-value=1.2e-07 Score=75.01 Aligned_cols=85 Identities=11% Similarity=0.121 Sum_probs=59.9
Q ss_pred CCcEEEEeCCc------hHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCc------c
Q 037843 12 KNPIVVIDNYD------SFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQES------G 79 (203)
Q Consensus 12 ~~~i~iid~~~------~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~------~ 79 (203)
.++|+||++.. .+..++.++|+.+ |+++.+++......+++. +.|+|+++|| +.... .
T Consensus 31 ~~~i~iI~~a~~~~~~~~~~~~~~~al~~l------G~~~~~v~~~~d~~~~l~--~ad~I~lpGG--~~~~~~~~l~~~ 100 (229)
T 1fy2_A 31 RRSAVFIPFAGVTQTWDEYTDKTAEVLAPL------GVNVTGIHRVADPLAAIE--KAEIIIVGGG--NTFQLLKESRER 100 (229)
T ss_dssp CCEEEEECTTCCSSCHHHHHHHHHHHHGGG------TCEEEETTSSSCHHHHHH--HCSEEEECCS--CHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHHC------CCEEEEEeccccHHHHHh--cCCEEEECCC--cHHHHHHHHHHC
Confidence 58999999875 6777788889888 998877643211236676 4699999885 32221 1
Q ss_pred hHHHHHHH-hCCCCcee--ehhHHHHHHHh
Q 037843 80 ISFRTVLE-LGPTMPLF--CMGLKCIGEAL 106 (203)
Q Consensus 80 ~~~~~i~~-~~~~~Pil--ClG~Qlla~a~ 106 (203)
.+.+.|++ +.+++|++ |.|||+++...
T Consensus 101 gl~~~l~~~~~~G~p~~G~sAG~~~l~~~~ 130 (229)
T 1fy2_A 101 GLLAPMADRVKRGALYIGWSAGANLACPTI 130 (229)
T ss_dssp TCHHHHHHHHHTTCEEEEETHHHHHTSSBS
T ss_pred ChHHHHHHHHHcCCEEEEECHHHHhhcccc
Confidence 13455665 45779999 99999998743
No 38
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.36 E-value=2.8e-07 Score=71.67 Aligned_cols=83 Identities=12% Similarity=0.081 Sum_probs=58.8
Q ss_pred CCcEEEEeCCch------HHHHHHHHHHHhhhhhcCCceEEEEeCCcccH----HHHhccCCCEEEECCCCCCCCCcc--
Q 037843 12 KNPIVVIDNYDS------FTYNLCQYMGELELELSQGYHFEVYRNDELTV----AELKRKKPRGVVISPGPGAPQESG-- 79 (203)
Q Consensus 12 ~~~i~iid~~~~------~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~----~~l~~~~~dgiil~GG~~~~~~~~-- 79 (203)
.++|++|++.++ +..++.++|+.+ |+++.+++....+. +.+. +.|+|+++|| +.....
T Consensus 27 ~~~i~~Ip~As~~~~~~~~~~s~~~a~~~l------G~~v~~~~i~~~~~~~~~~~l~--~ad~I~l~GG--~~~~l~~~ 96 (206)
T 3l4e_A 27 GKTVTFIPTASTVEEVTFYVEAGKKALESL------GLLVEELDIATESLGEITTKLR--KNDFIYVTGG--NTFFLLQE 96 (206)
T ss_dssp TCEEEEECGGGGGCSCCHHHHHHHHHHHHT------TCEEEECCTTTSCHHHHHHHHH--HSSEEEECCS--CHHHHHHH
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHc------CCeEEEEEecCCChHHHHHHHH--hCCEEEECCC--CHHHHHHH
Confidence 589999987664 677888999999 99988875322333 3454 4699999775 322211
Q ss_pred ----hHHHHHHH-hCCCCcee--ehhHHHHHH
Q 037843 80 ----ISFRTVLE-LGPTMPLF--CMGLKCIGE 104 (203)
Q Consensus 80 ----~~~~~i~~-~~~~~Pil--ClG~Qlla~ 104 (203)
.+.+.|++ +.+++|++ |.|+|+++.
T Consensus 97 L~~~gl~~~l~~~~~~G~p~~G~sAGa~~l~~ 128 (206)
T 3l4e_A 97 LKRTGADKLILEEIAAGKLYIGESAGAVITSP 128 (206)
T ss_dssp HHHHTHHHHHHHHHHTTCEEEEETHHHHTTSS
T ss_pred HHHCChHHHHHHHHHcCCeEEEECHHHHHhcc
Confidence 13455666 46789999 999999975
No 39
>4hcj_A THIJ/PFPI domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.12A {Brachyspira murdochii}
Probab=97.94 E-value=1.5e-05 Score=60.47 Aligned_cols=91 Identities=15% Similarity=0.143 Sum_probs=59.0
Q ss_pred cCCCCCcEEEEeCCchH----HHHHHHHHHHhhhhhcCCceEEEEeCCc--------------ccHHHHhccCCCEEEEC
Q 037843 8 SKNDKNPIVVIDNYDSF----TYNLCQYMGELELELSQGYHFEVYRNDE--------------LTVAELKRKKPRGVVIS 69 (203)
Q Consensus 8 ~~~~~~~i~iid~~~~~----~~~l~~~l~~~~~~~~~g~~~~v~~~~~--------------~~~~~l~~~~~dgiil~ 69 (203)
|.+++++|+||-. ++| .-...+.|++. |++++++.... .+.+++...+||+|||+
T Consensus 4 m~~t~~~v~il~~-~gFe~~E~~~p~~~l~~a------g~~V~~~s~~~~~v~~~~G~~v~~d~~l~~v~~~~yD~liiP 76 (177)
T 4hcj_A 4 MGKTNNILYVMSG-QNFQDEEYFESKKIFESA------GYKTKVSSTFIGTAQGKLGGMTNIDLLFSEVDAVEFDAVVFV 76 (177)
T ss_dssp -CCCCEEEEECCS-EEECHHHHHHHHHHHHHT------TCEEEEEESSSEEEEETTSCEEEECEEGGGCCGGGCSEEEEC
T ss_pred cccCCCEEEEECC-CCccHHHHHHHHHHHHHC------CCEEEEEECCCCeEeeCCCCEEecCccHHHCCHhHCCEEEEC
Confidence 5565566666622 233 22344677887 88887764321 13444444478999999
Q ss_pred CCCCCCC--CcchHHHHHHHh-CCCCcee--ehhHHHHHHH
Q 037843 70 PGPGAPQ--ESGISFRTVLEL-GPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 70 GG~~~~~--~~~~~~~~i~~~-~~~~Pil--ClG~Qlla~a 105 (203)
||.+... +...+.++++++ .+++||. |-|-++|+.+
T Consensus 77 GG~g~~~l~~~~~~~~~l~~~~~~~k~iaaIC~g~~~La~a 117 (177)
T 4hcj_A 77 GGIGCITLWDDWRTQGLAKLFLDNQKIVAGIGSGVVIMANA 117 (177)
T ss_dssp CSGGGGGGTTCHHHHHHHHHHHHTTCEEEEETTHHHHHHHT
T ss_pred CCccHHHHhhCHHHHHHHHHHHHhCCEEEEecccHHHHHHC
Confidence 9986432 234467788874 6789998 9999999875
No 40
>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2
Probab=97.89 E-value=2.9e-05 Score=59.39 Aligned_cols=89 Identities=11% Similarity=0.126 Sum_probs=57.4
Q ss_pred CCCcEEEEeCCchH---HHHHHHHHHHhhhhhcCCceEEEEeCCcc----------------cHHHHhccCCCEEEECCC
Q 037843 11 DKNPIVVIDNYDSF---TYNLCQYMGELELELSQGYHFEVYRNDEL----------------TVAELKRKKPRGVVISPG 71 (203)
Q Consensus 11 ~~~~i~iid~~~~~---~~~l~~~l~~~~~~~~~g~~~~v~~~~~~----------------~~~~l~~~~~dgiil~GG 71 (203)
++++|+|+-+.... .....+.|+.. |+++.++..... +.+++...++|+||++||
T Consensus 22 ~~~kV~ill~~g~~~~e~~~~~~~l~~a------g~~v~~vs~~~~~~v~~~~g~~~v~~~~~l~~~~~~~~D~livpGG 95 (193)
T 1oi4_A 22 LSKKIAVLITDEFEDSEFTSPADEFRKA------GHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGG 95 (193)
T ss_dssp CCCEEEEECCTTBCTHHHHHHHHHHHHT------TCEEEEEESSTTCEEECTTSSCEEECCEEGGGCCGGGCSEEEECCB
T ss_pred cCCEEEEEECCCCCHHHHHHHHHHHHHC------CCEEEEEECCCCcceecCCCCeEEECCCChHHCCcccCCEEEECCC
Confidence 45789888653211 23456778777 888887754311 112222126899999999
Q ss_pred CCCC--CCcchHHHHHHHh-CCCCcee--ehhHHHHHHH
Q 037843 72 PGAP--QESGISFRTVLEL-GPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 72 ~~~~--~~~~~~~~~i~~~-~~~~Pil--ClG~Qlla~a 105 (203)
.+.. .....+.+++++. .+++||. |.|.|+|+.+
T Consensus 96 ~~~~~l~~~~~l~~~l~~~~~~gk~i~aIC~G~~lLa~a 134 (193)
T 1oi4_A 96 HSPDYLRGDNRFVTFTRDFVNSGKPVFAICHGPQLLISA 134 (193)
T ss_dssp THHHHHTTSHHHHHHHHHHHHTTCCEEEETTTHHHHHHH
T ss_pred cCHHHhhhCHHHHHHHHHHHHcCCEEEEECHHHHHHHHC
Confidence 5421 1223456778774 6789999 9999999986
No 41
>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A
Probab=97.59 E-value=0.00011 Score=57.73 Aligned_cols=46 Identities=13% Similarity=0.202 Sum_probs=35.5
Q ss_pred CCCEEEECCCCCC---CCC----------cchHHHHHHHh-CCCCcee--ehhHHHHHHHhC
Q 037843 62 KPRGVVISPGPGA---PQE----------SGISFRTVLEL-GPTMPLF--CMGLKCIGEALE 107 (203)
Q Consensus 62 ~~dgiil~GG~~~---~~~----------~~~~~~~i~~~-~~~~Pil--ClG~Qlla~a~g 107 (203)
+||+|||+||.+. ..+ ...+.++++++ .+++||. |-|-++|+.++.
T Consensus 90 ~~D~livpGG~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~gk~vaaIC~G~~~La~aL~ 151 (232)
T 1vhq_A 90 ELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAPAMLPKIFD 151 (232)
T ss_dssp GCSEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHHHHTTCCEEEETTGGGGHHHHCS
T ss_pred cCCEEEECCCcchHHHHhhhhccccccccCHHHHHHHHHHHHcCCEEEEECHHHHHHHHHhc
Confidence 6899999999764 222 33457778874 6789999 999999999865
No 42
>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ...
Probab=97.46 E-value=0.00022 Score=54.47 Aligned_cols=88 Identities=18% Similarity=0.089 Sum_probs=57.5
Q ss_pred CCcEEEEeCCchH---HHHHHHHHHHhhhhhcCCceEEEEeCCc---------------ccHHHH-hccCCCEEEECCCC
Q 037843 12 KNPIVVIDNYDSF---TYNLCQYMGELELELSQGYHFEVYRNDE---------------LTVAEL-KRKKPRGVVISPGP 72 (203)
Q Consensus 12 ~~~i~iid~~~~~---~~~l~~~l~~~~~~~~~g~~~~v~~~~~---------------~~~~~l-~~~~~dgiil~GG~ 72 (203)
+++|+|+-+.... .....+.|+.. |+++.++.... .+.+++ ...++|.||++||.
T Consensus 3 ~~~v~ill~~g~~~~e~~~~~~~l~~a------g~~v~~vs~~~~~~v~~~~g~~v~~d~~l~~~~~~~~~D~livpGG~ 76 (197)
T 2rk3_A 3 SKRALVILAKGAEEMETVIPVDVMRRA------GIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGN 76 (197)
T ss_dssp CCEEEEEECTTCCHHHHHHHHHHHHHT------TCEEEEEETTCSSCEECTTSCEECCSEEHHHHHTTCCCSEEEECCCH
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHHHC------CCEEEEEEcCCCCccccCCCCEEeCCcCHHHcCCccCCCEEEECCCc
Confidence 4678777543211 22355677777 88887765321 134555 33478999999997
Q ss_pred CCCC---CcchHHHHHHHh-CCCCcee--ehhHHHHHHH
Q 037843 73 GAPQ---ESGISFRTVLEL-GPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 73 ~~~~---~~~~~~~~i~~~-~~~~Pil--ClG~Qlla~a 105 (203)
+.+. ....+.+++++. .+++||. |-|-++|+.+
T Consensus 77 ~~~~~l~~~~~~~~~l~~~~~~gk~i~aiC~G~~~La~a 115 (197)
T 2rk3_A 77 LGAQNLSESAAVKEILKEQENRKGLIATICAGPTALLAH 115 (197)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred hhHHHhhhCHHHHHHHHHHHHcCCEEEEECHHHHHHHHC
Confidence 4332 223456778774 6789999 9999999986
No 43
>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} SCOP: c.23.16.2 PDB: 1g2i_A
Probab=97.46 E-value=0.00013 Score=54.11 Aligned_cols=88 Identities=14% Similarity=0.117 Sum_probs=55.8
Q ss_pred CCcEEEEeCCchH---HHHHHHHHHHhhhhhcCCceEEEEeCCc--------------ccHHHHhccCCCEEEECCCCCC
Q 037843 12 KNPIVVIDNYDSF---TYNLCQYMGELELELSQGYHFEVYRNDE--------------LTVAELKRKKPRGVVISPGPGA 74 (203)
Q Consensus 12 ~~~i~iid~~~~~---~~~l~~~l~~~~~~~~~g~~~~v~~~~~--------------~~~~~l~~~~~dgiil~GG~~~ 74 (203)
.++|+|+-+.... .....+.|+.. |+++.++..+. .+.+++...++|.||++||.+.
T Consensus 2 ~~ki~il~~~g~~~~e~~~~~~~l~~a------g~~v~~vs~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~ 75 (168)
T 3l18_A 2 SMKVLFLSADGFEDLELIYPLHRIKEE------GHEVYVASFQRGKITGKHGYSVNVDLTFEEVDPDEFDALVLPGGKAP 75 (168)
T ss_dssp CCEEEEECCTTBCHHHHHHHHHHHHHT------TCEEEEEESSSEEEECTTSCEEEECEEGGGCCGGGCSEEEECCBSHH
T ss_pred CcEEEEEeCCCccHHHHHHHHHHHHHC------CCEEEEEECCCCEEecCCCcEEeccCChhHCCHhhCCEEEECCCcCH
Confidence 3578777443211 22355677776 88887765431 1123333235899999999753
Q ss_pred C--CCcchHHHHHHH-hCCCCcee--ehhHHHHHHH
Q 037843 75 P--QESGISFRTVLE-LGPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 75 ~--~~~~~~~~~i~~-~~~~~Pil--ClG~Qlla~a 105 (203)
. .....+.+++++ ..+++||. |-|.++|+.+
T Consensus 76 ~~~~~~~~l~~~l~~~~~~~k~i~aiC~G~~~La~a 111 (168)
T 3l18_A 76 EIVRLNEKAVMITRRMFEDDKPVASICHGPQILISA 111 (168)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCCEEEETTTHHHHHHT
T ss_pred HHhccCHHHHHHHHHHHHCCCEEEEECHhHHHHHHC
Confidence 1 123345677877 46889999 9999999985
No 44
>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2
Probab=97.45 E-value=0.00011 Score=56.57 Aligned_cols=88 Identities=11% Similarity=0.027 Sum_probs=57.5
Q ss_pred CCcEEEEeCCchH---HHHHHHHHHHhhhhhcCCceEEEEeCCc-----------------ccHHHHhccCCCEEEECCC
Q 037843 12 KNPIVVIDNYDSF---TYNLCQYMGELELELSQGYHFEVYRNDE-----------------LTVAELKRKKPRGVVISPG 71 (203)
Q Consensus 12 ~~~i~iid~~~~~---~~~l~~~l~~~~~~~~~g~~~~v~~~~~-----------------~~~~~l~~~~~dgiil~GG 71 (203)
+++|+|+-+.... .....+.|+.. |+++.++..+. .+.+++...+||+||++||
T Consensus 2 ~~kV~ill~~g~~~~e~~~~~~~l~~a------g~~v~~vs~~~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpGG 75 (205)
T 2ab0_A 2 SASALVCLAPGSEETEAVTTIDLLVRG------GIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGG 75 (205)
T ss_dssp CCEEEEEECTTCCHHHHHHHHHHHHHT------TCEEEEEECSSTTCCEEECTTSCEEECSEEHHHHTTSCCSEEEECCC
T ss_pred CcEEEEEEcCCCcHHHHHHHHHHHHHC------CCEEEEEeCCCCCCceeecCCCeEEecCCCHHHCCcccCCEEEECCC
Confidence 4678877543221 22345677777 88887764321 1345554347899999999
Q ss_pred CCCCCC---cchHHHHHHH-hCCCCcee--ehhH-HHHHHH
Q 037843 72 PGAPQE---SGISFRTVLE-LGPTMPLF--CMGL-KCIGEA 105 (203)
Q Consensus 72 ~~~~~~---~~~~~~~i~~-~~~~~Pil--ClG~-Qlla~a 105 (203)
.+.+.+ ...+.+++++ ..+++||. |-|- ++|+.+
T Consensus 76 ~~~~~~l~~~~~l~~~l~~~~~~gk~i~aiC~G~~~lLa~a 116 (205)
T 2ab0_A 76 IKGAECFRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPH 116 (205)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHTTCEEEEETHHHHHHTTTT
T ss_pred cccHHHhccCHHHHHHHHHHHHcCCEEEEECHhHHHHHHHC
Confidence 654332 2345677877 46789999 9999 999874
No 45
>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis}
Probab=97.44 E-value=0.00021 Score=56.75 Aligned_cols=45 Identities=20% Similarity=0.163 Sum_probs=34.4
Q ss_pred CCCEEEECCCCCCC--------------CCcchHHHHHHHh-CCCCcee--ehhHHHHHHHh
Q 037843 62 KPRGVVISPGPGAP--------------QESGISFRTVLEL-GPTMPLF--CMGLKCIGEAL 106 (203)
Q Consensus 62 ~~dgiil~GG~~~~--------------~~~~~~~~~i~~~-~~~~Pil--ClG~Qlla~a~ 106 (203)
+||+|||+||.+.. .....+.++++++ .+++||. |-|-++|+.+-
T Consensus 107 ~~D~livPGG~~~~~~L~~~~~~~~~~~~~~~~l~~~lr~~~~~gk~IaaIC~G~~~La~ag 168 (242)
T 3l3b_A 107 EFDMLVIPGGYGVAKNFSNLFDEDKENDYILPEFKNAVREFYNAKKPIGAVCISPAVVVALL 168 (242)
T ss_dssp GCSEEEECCCHHHHHHHBSTTSCC--CCCBCHHHHHHHHHHHHTTCCEEEETTHHHHHHHHH
T ss_pred cCCEEEEcCCcchhhhhhhhhccccccccCCHHHHHHHHHHHHcCCEEEEECHHHHHHHHhC
Confidence 68999999997531 1123467778774 6789999 99999999875
No 46
>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2
Probab=97.35 E-value=0.00032 Score=54.55 Aligned_cols=44 Identities=11% Similarity=0.144 Sum_probs=34.3
Q ss_pred CCCEEEECCCCCCC---CCcchHHHHHHHh-CCCCcee--ehhHHHHHHH
Q 037843 62 KPRGVVISPGPGAP---QESGISFRTVLEL-GPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 62 ~~dgiil~GG~~~~---~~~~~~~~~i~~~-~~~~Pil--ClG~Qlla~a 105 (203)
+||+|||+||.+.. .....+.++++++ .+++||. |-|-++|+.+
T Consensus 89 ~~D~livpGG~~~~~~l~~~~~l~~~l~~~~~~~k~iaaiC~G~~~La~a 138 (224)
T 1u9c_A 89 GFDAIFLPGGHGTMFDFPDNETLQYVLQQFAEDGRIIAAVCHGPSGLVNA 138 (224)
T ss_dssp SCSEEEECCCTTHHHHSTTCHHHHHHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred hCCEEEECCCcchHHHhhcCHHHHHHHHHHHHCCCEEEEEChHHHHHHHc
Confidence 68999999998753 2334567788874 6789998 9999999875
No 47
>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} SCOP: c.23.16.0
Probab=97.25 E-value=0.00012 Score=56.56 Aligned_cols=93 Identities=12% Similarity=0.104 Sum_probs=56.6
Q ss_pred ccCCCCCcEEEEeCCchH---HHHHHHHHHHhhhhhcCCceEEEEeCCc---------------ccHHHHhccCCCEEEE
Q 037843 7 LSKNDKNPIVVIDNYDSF---TYNLCQYMGELELELSQGYHFEVYRNDE---------------LTVAELKRKKPRGVVI 68 (203)
Q Consensus 7 ~~~~~~~~i~iid~~~~~---~~~l~~~l~~~~~~~~~g~~~~v~~~~~---------------~~~~~l~~~~~dgiil 68 (203)
++++|+++|+|+-..... .....+.|+.. |+++.++..+. .+.+++...+||.|||
T Consensus 4 ~~~~m~~~v~ill~~g~~~~e~~~~~~~l~~a------g~~v~~vs~~g~~~v~~~~G~~v~~d~~l~~~~~~~~D~liv 77 (208)
T 3ot1_A 4 MEQGMSKRILVPVAHGSEEMETVIIVDTLVRA------GFQVTMAAVGDKLQVQGSRGVWLTAEQTLEACSAEAFDALAL 77 (208)
T ss_dssp -----CCEEEEEECTTCCHHHHHHHHHHHHHT------TCEEEEEESSSCSEEECTTSCEEECSEEGGGCCGGGCSEEEE
T ss_pred cccccCCeEEEEECCCCcHHHHHHHHHHHHHC------CCEEEEEEcCCCcceecCCCcEEeCCCCHHHCCCcCCCEEEE
Confidence 456677889888543211 22355677777 88887765431 1123332236899999
Q ss_pred CCCCCCCC---CcchHHHHHHH-hCCCCcee--ehhH-HHHHHH
Q 037843 69 SPGPGAPQ---ESGISFRTVLE-LGPTMPLF--CMGL-KCIGEA 105 (203)
Q Consensus 69 ~GG~~~~~---~~~~~~~~i~~-~~~~~Pil--ClG~-Qlla~a 105 (203)
+||.+.+. ....+.+++++ ..+++||. |-|- .+|+.+
T Consensus 78 pGG~~~~~~l~~~~~l~~~l~~~~~~gk~i~aiC~G~a~~La~a 121 (208)
T 3ot1_A 78 PGGVGGAQAFADSTALLALIDAFSQQGKLVAAICATPALVFAKQ 121 (208)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHHHHTTCEEEEETTHHHHTTTTT
T ss_pred CCCchHHHHHhhCHHHHHHHHHHHHcCCEEEEEChhHHHHHHHC
Confidence 99964322 33456778887 46789998 9998 888864
No 48
>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster}
Probab=97.23 E-value=0.00039 Score=52.77 Aligned_cols=88 Identities=15% Similarity=0.113 Sum_probs=56.8
Q ss_pred CCCcEEEEeCCchHH----HHHHHHHHHhhhhhcCCceEEEEeCCc---------------ccHHHHhccCCCEEEECCC
Q 037843 11 DKNPIVVIDNYDSFT----YNLCQYMGELELELSQGYHFEVYRNDE---------------LTVAELKRKKPRGVVISPG 71 (203)
Q Consensus 11 ~~~~i~iid~~~~~~----~~l~~~l~~~~~~~~~g~~~~v~~~~~---------------~~~~~l~~~~~dgiil~GG 71 (203)
|+++|+|+-. ++|. ....+.|+.. |+++.++..+. .+.+++...+||.||++||
T Consensus 4 m~kkv~ill~-~g~~~~e~~~~~~~l~~a------g~~v~~~s~~~~~~v~~~~g~~i~~d~~l~~~~~~~~D~livpGG 76 (190)
T 4e08_A 4 MSKSALVILA-PGAEEMEFIIAADVLRRA------GIKVTVAGLNGGEAVKCSRDVQILPDTSLAQVASDKFDVVVLPGG 76 (190)
T ss_dssp CCCEEEEEEC-TTCCHHHHHHHHHHHHHT------TCEEEEEESSSSSCEECTTSCEEECSEETGGGTTCCCSEEEECCC
T ss_pred CCcEEEEEEC-CCchHHHHHHHHHHHHHC------CCEEEEEECCCCcceecCCCcEEECCCCHHHCCcccCCEEEECCC
Confidence 4567877754 2332 2345677777 88888775432 1134443336899999998
Q ss_pred CCCCC---CcchHHHHHHH-hCCCCcee--ehhHHHHHHH
Q 037843 72 PGAPQ---ESGISFRTVLE-LGPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 72 ~~~~~---~~~~~~~~i~~-~~~~~Pil--ClG~Qlla~a 105 (203)
.+... ....+.+++++ ..+++||. |-|-++|+.+
T Consensus 77 ~~~~~~~~~~~~~~~~l~~~~~~~k~i~aiC~G~~~La~a 116 (190)
T 4e08_A 77 LGGSNAMGESSLVGDLLRSQESGGGLIAAICAAPTVLAKH 116 (190)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred ChHHHHhhhCHHHHHHHHHHHHCCCEEEEECHHHHHHHHC
Confidence 43221 23345677777 46789998 9999999985
No 49
>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans}
Probab=97.13 E-value=0.00068 Score=51.26 Aligned_cols=87 Identities=16% Similarity=0.239 Sum_probs=54.5
Q ss_pred CCcEEEEeCCchHH----HHHHHHHHHhhhhhcCCceEEEEeCCc-------------------ccHHHHhccCCCEEEE
Q 037843 12 KNPIVVIDNYDSFT----YNLCQYMGELELELSQGYHFEVYRNDE-------------------LTVAELKRKKPRGVVI 68 (203)
Q Consensus 12 ~~~i~iid~~~~~~----~~l~~~l~~~~~~~~~g~~~~v~~~~~-------------------~~~~~l~~~~~dgiil 68 (203)
+++|+|+-+ ++|. ....+.|+.. |+++.++..+. .+.+++...+||+||+
T Consensus 9 ~~~v~il~~-~g~~~~e~~~~~~~l~~a------g~~v~~vs~~~~~v~~~~~~~~~g~~v~~~~~~~~~~~~~~D~liv 81 (190)
T 2vrn_A 9 GKKIAILAA-DGVEEIELTSPRAAIEAA------GGTTELISLEPGEIQSMKGDIEPQEKYRVDHVVSEVQVSDYDGLLL 81 (190)
T ss_dssp TCEEEEECC-TTCBHHHHHHHHHHHHHT------TCEEEEEESSSSEEEEEETTTEEEEEEECSEEGGGCCGGGCSEEEE
T ss_pred CCEEEEEeC-CCCCHHHHHHHHHHHHHC------CCEEEEEecCCCccccccccccCCcEEeCCCChhhCChhhCCEEEE
Confidence 367888844 3332 2345677776 77776654321 1223332236899999
Q ss_pred CCCCCCCC---CcchHHHHHHH-hCCCCcee--ehhHHHHHHH
Q 037843 69 SPGPGAPQ---ESGISFRTVLE-LGPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 69 ~GG~~~~~---~~~~~~~~i~~-~~~~~Pil--ClG~Qlla~a 105 (203)
+||.+.+. ....+.+++++ ..+++||. |-|.++|+.+
T Consensus 82 pGG~~~~~~~~~~~~l~~~l~~~~~~gk~i~aiC~G~~~La~a 124 (190)
T 2vrn_A 82 PGGTVNPDKLRLEEGAMKFVRDMYDAGKPIAAICHGPWSLSET 124 (190)
T ss_dssp CCCTHHHHHHTTCHHHHHHHHHHHHTTCCEEEC-CTTHHHHHT
T ss_pred CCCchhHHHHhhCHHHHHHHHHHHHcCCEEEEECHhHHHHHhC
Confidence 99974332 23446778887 46789999 9999999986
No 50
>3gra_A Transcriptional regulator, ARAC family; transcription regulator, PSI-II, structural genomics structure initiative; 2.30A {Pseudomonas putida}
Probab=97.05 E-value=0.0012 Score=50.77 Aligned_cols=98 Identities=14% Similarity=-0.002 Sum_probs=54.5
Q ss_pred cCCCCCcEEEEeCCchH---HHHHHHHHHHhhhhhcCCceEEEEeCCcc-------------cHHHHhccCCCEEEECCC
Q 037843 8 SKNDKNPIVVIDNYDSF---TYNLCQYMGELELELSQGYHFEVYRNDEL-------------TVAELKRKKPRGVVISPG 71 (203)
Q Consensus 8 ~~~~~~~i~iid~~~~~---~~~l~~~l~~~~~~~~~g~~~~v~~~~~~-------------~~~~l~~~~~dgiil~GG 71 (203)
|+.++++|+|+-+..-. .....+.|+........++++.++..+.. +.+++...++|.|||+||
T Consensus 1 ~~~~~~~v~ill~~g~~~~e~~~~~dvl~~a~~~~~~~~~v~~vs~~~~~v~~~~G~~i~~d~l~~~~~~~~D~livpGG 80 (202)
T 3gra_A 1 MSLAPYRVDFILLEHFSMASFTVAMDVLVTANLLRADSFQFTPLSLDGDRVLSDLGLELVATELSAAALKELDLLVVCGG 80 (202)
T ss_dssp ----CEEEEEEECTTBCHHHHHHHHHHHHHHHHHSTTSEEEEEEESSSSEEEBTTSCEEECEECCSGGGTTCSEEEEECC
T ss_pred CCCCcEEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCCceEcCCCCEEECCCcccccCCCCCEEEEeCC
Confidence 55567788888553211 12234555544110111255555543210 122222236899999999
Q ss_pred CCCCCCcchHHHHHHHh-CCCCcee--ehhHHHHHHH
Q 037843 72 PGAPQESGISFRTVLEL-GPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 72 ~~~~~~~~~~~~~i~~~-~~~~Pil--ClG~Qlla~a 105 (203)
.+.......+.+++++. .++++|. |-|-.+|+.+
T Consensus 81 ~~~~~~~~~l~~~l~~~~~~g~~iaaIC~G~~~La~a 117 (202)
T 3gra_A 81 LRTPLKYPELDRLLNDCAAHGMALGGLWNGAWFLGRA 117 (202)
T ss_dssp TTCCSCCTTHHHHHHHHHHHTCEEEEETTHHHHHHHH
T ss_pred CchhhccHHHHHHHHHHHhhCCEEEEECHHHHHHHHc
Confidence 76543225567888874 5678888 9999999986
No 51
>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}
Probab=96.99 E-value=0.0018 Score=58.22 Aligned_cols=88 Identities=13% Similarity=0.074 Sum_probs=59.8
Q ss_pred CCcEEEEeCCchHH----HHHHHHHHHhhhhhcCCceEEEEeCC-----cccHHHHhccCCCEEEECCCCCCC-------
Q 037843 12 KNPIVVIDNYDSFT----YNLCQYMGELELELSQGYHFEVYRND-----ELTVAELKRKKPRGVVISPGPGAP------- 75 (203)
Q Consensus 12 ~~~i~iid~~~~~~----~~l~~~l~~~~~~~~~g~~~~v~~~~-----~~~~~~l~~~~~dgiil~GG~~~~------- 75 (203)
+++|+||-..+.|. ..+.++|++. |+.+.++-.. +.+.++.....||+|||+||....
T Consensus 537 grKVaILvadG~fE~~El~~p~~aL~~a------Ga~V~vVsp~~g~GvD~t~~~~~s~~fDAVvlPGG~~~~~~~~~~~ 610 (688)
T 3ej6_A 537 TLRVGVLSTTKGGSLDKAKALKEQLEKD------GLKVTVIAEYLASGVDQTYSAADATAFDAVVVAEGAERVFSGKGAM 610 (688)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHHHHHHT------TCEEEEEESSCCTTCCEETTTCCGGGCSEEEECTTCCTTTSTTTTC
T ss_pred CCEEEEEccCCCccHHHHHHHHHHHHHC------CCEEEEEeCCCCCCcccCcccCChhcCcEEEECCCcccccccccch
Confidence 46788884322232 3456778887 9999988542 123344444479999999996541
Q ss_pred ---CCcchHHHHHHH-hCCCCcee--ehhHHHHHHH
Q 037843 76 ---QESGISFRTVLE-LGPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 76 ---~~~~~~~~~i~~-~~~~~Pil--ClG~Qlla~a 105 (203)
...+....++++ +.++|||- |-|-++|..+
T Consensus 611 d~Lr~~~~a~~fV~e~~~hgKpIAAIchgp~lL~~A 646 (688)
T 3ej6_A 611 SPLFPAGRPSQILTDGYRWGKPVAAVGSAKKALQSI 646 (688)
T ss_dssp CTTSCTTHHHHHHHHHHHTTCCEEEEGGGHHHHHHT
T ss_pred hhhccCHHHHHHHHHHHHcCCEEEEeCccHHHHHHc
Confidence 223456788887 57889998 9999999875
No 52
>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein struct initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482}
Probab=96.97 E-value=0.0014 Score=48.84 Aligned_cols=44 Identities=14% Similarity=0.061 Sum_probs=32.5
Q ss_pred CCCEEEECCC--C-CCCC-----CcchHHHHHHHh-CCCCcee--ehhHHHHHHH
Q 037843 62 KPRGVVISPG--P-GAPQ-----ESGISFRTVLEL-GPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 62 ~~dgiil~GG--~-~~~~-----~~~~~~~~i~~~-~~~~Pil--ClG~Qlla~a 105 (203)
++|.||++|| . +... ....+.++++++ .+++||. |-|.++|+.+
T Consensus 66 ~~D~livpGG~~~~~~~~l~~~~~~~~~~~~l~~~~~~gk~i~aiC~G~~~La~a 120 (175)
T 3cne_A 66 EFDALVFSCGDAVPVFQQYANQPYNVDLMEVIKTFGEKGKMMIGHCAGAMMFDFT 120 (175)
T ss_dssp GCSEEEEECCTTGGGGGGCTTCHHHHHHHHHHHHHHHTTCEEEEETTHHHHHHHT
T ss_pred cCCEEEECCCcCcccHHHHhhcccCHHHHHHHHHHHHCCCEEEEECHHHHHHHHC
Confidence 6899999999 5 3321 123356777774 6789999 9999999986
No 53
>2fex_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; 1.70A {Agrobacterium tumefaciens} SCOP: c.23.16.2
Probab=96.83 E-value=0.0014 Score=49.58 Aligned_cols=87 Identities=15% Similarity=0.087 Sum_probs=54.2
Q ss_pred CCcEEEEeCCchH----HHHHHHHHHH-hhhhhcCCceEEEEeCCc--------------ccHHHHhccCCCEEEECCCC
Q 037843 12 KNPIVVIDNYDSF----TYNLCQYMGE-LELELSQGYHFEVYRNDE--------------LTVAELKRKKPRGVVISPGP 72 (203)
Q Consensus 12 ~~~i~iid~~~~~----~~~l~~~l~~-~~~~~~~g~~~~v~~~~~--------------~~~~~l~~~~~dgiil~GG~ 72 (203)
|++|+|+-.. +| .......|+. . |+++.++..+. .+.+++...++|+||++||.
T Consensus 1 m~~i~ill~~-g~~~~e~~~~~~~l~~a~------~~~v~~vs~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~livpGG~ 73 (188)
T 2fex_A 1 MTRIAIALAQ-DFADWEPALLAAAARSYL------GVEIVHATPDGMPVTSMGGLKVTPDTSYDALDPVDIDALVIPGGL 73 (188)
T ss_dssp CCEEEEECCT-TBCTTSSHHHHHHHHHHS------CCEEEEEETTSSCEECTTCCEEECSEEGGGCCTTTCSEEEECCBS
T ss_pred CcEEEEEeCC-CchHHHHHHHHHHHhhcC------CceEEEEeCCCCceeeCCCcEEeccccHHHCCcccCCEEEECCCC
Confidence 3578777332 22 2234556666 5 77777665421 11233322268999999997
Q ss_pred CCC-CCcchHHHHHHHh-CCCCcee--ehhHHHHHHH
Q 037843 73 GAP-QESGISFRTVLEL-GPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 73 ~~~-~~~~~~~~~i~~~-~~~~Pil--ClG~Qlla~a 105 (203)
+.. .....+.+++++. .+++||. |-|.++|+.+
T Consensus 74 ~~~~~~~~~l~~~l~~~~~~~k~i~aiC~G~~~La~a 110 (188)
T 2fex_A 74 SWEKGTAADLGGLVKRFRDRDRLVAGICAAASALGGT 110 (188)
T ss_dssp HHHHTCCCCCHHHHHHHHHTTCEEEEETHHHHHHHHT
T ss_pred cccccccHHHHHHHHHHHHCCCEEEEECHHHHHHHHC
Confidence 521 2234467778874 6789999 9999999986
No 54
>3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis}
Probab=96.82 E-value=0.0023 Score=49.48 Aligned_cols=94 Identities=4% Similarity=-0.082 Sum_probs=54.5
Q ss_pred CCcEEEEeCCc---hHHHHHHHHHHHhhhhh--cCCceEEEEeCCc--------------ccHHHHhccCCCEEEECCCC
Q 037843 12 KNPIVVIDNYD---SFTYNLCQYMGELELEL--SQGYHFEVYRNDE--------------LTVAELKRKKPRGVVISPGP 72 (203)
Q Consensus 12 ~~~i~iid~~~---~~~~~l~~~l~~~~~~~--~~g~~~~v~~~~~--------------~~~~~l~~~~~dgiil~GG~ 72 (203)
|++|+|+-..+ .-.....+.|+...... ..++++.++..+. .+.+++...++|.||++||.
T Consensus 5 m~~v~ill~~g~~~~e~~~~~~~l~~a~~~~~~~~~~~v~~vs~~~~~v~~~~G~~i~~d~~~~~~~~~~~D~livpGG~ 84 (212)
T 3efe_A 5 TKKAFLYVFNTMSDWEYGYLIAELNSGRYFKKDLAPLKVITVGANKEMITTMGGLRIKPDISLDECTLESKDLLILPGGT 84 (212)
T ss_dssp CCCEEEEECTTCCTTTTHHHHHHHHHCTTSCTTCCCCCEEEEESSSCCEECTTCCEECCSEEGGGCCCCTTCEEEECCCS
T ss_pred ccEEEEEECCCccHHHHHHHHHHHHhhhccccCCCCeEEEEEECCCCeEEcCCCCEEecCcCHHHCCccCCCEEEECCCC
Confidence 57787774322 11234556666210000 0167776664321 12233332368999999997
Q ss_pred CCCC-CcchHHHHHHHh-CCCCcee--ehhHHHHHHH
Q 037843 73 GAPQ-ESGISFRTVLEL-GPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 73 ~~~~-~~~~~~~~i~~~-~~~~Pil--ClG~Qlla~a 105 (203)
+... ....+.+++++. .++++|. |-|-.+|+.+
T Consensus 85 ~~~~~~~~~l~~~l~~~~~~gk~iaaiC~G~~~La~a 121 (212)
T 3efe_A 85 TWSEEIHQPILERIGQALKIGTIVAAICGATDALANM 121 (212)
T ss_dssp CTTSGGGHHHHHHHHHHHHHTCEEEEETHHHHHHHHT
T ss_pred ccccccCHHHHHHHHHHHHCCCEEEEEcHHHHHHHHc
Confidence 6422 223456777774 6779998 9999999986
No 55
>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis}
Probab=96.71 E-value=0.0036 Score=48.23 Aligned_cols=44 Identities=11% Similarity=0.179 Sum_probs=34.5
Q ss_pred CCCEEEECCCCCCCCCcchHHHHHHHh-CCCCcee--ehhHHHHHHH
Q 037843 62 KPRGVVISPGPGAPQESGISFRTVLEL-GPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 62 ~~dgiil~GG~~~~~~~~~~~~~i~~~-~~~~Pil--ClG~Qlla~a 105 (203)
++|.||++||.+.......+.+++++. .+++||. |-|-++|+.+
T Consensus 63 ~~D~livpGG~~~~~~~~~l~~~l~~~~~~gk~iaaiC~G~~~La~a 109 (206)
T 3f5d_A 63 NFNLLVMIGGDSWSNDNKKLLHFVKTAFQKNIPIAAICGAVDFLAKN 109 (206)
T ss_dssp CCSEEEECCBSCCCCCCHHHHHHHHHHHHTTCCEEEETHHHHHHHHT
T ss_pred CCCEEEEcCCCChhhcCHHHHHHHHHHHHcCCEEEEECHHHHHHHHc
Confidence 689999999986433333467788874 6789999 9999999986
No 56
>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0
Probab=96.66 E-value=0.0021 Score=51.03 Aligned_cols=44 Identities=11% Similarity=0.040 Sum_probs=33.9
Q ss_pred CCCEEEECCCCCCCC---CcchHHHHHHHh-CCCCcee--ehhHHHHHHH
Q 037843 62 KPRGVVISPGPGAPQ---ESGISFRTVLEL-GPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 62 ~~dgiil~GG~~~~~---~~~~~~~~i~~~-~~~~Pil--ClG~Qlla~a 105 (203)
+||+|+|+||.+... ....+.++++++ .+++||- |-|-.+|+.+
T Consensus 105 ~yD~l~ipGG~g~~~~l~~~~~l~~~l~~~~~~gk~iaaIC~Gp~~La~a 154 (247)
T 3n7t_A 105 DYGLMFVCGGHGALYDFPHAKHLQNIAQDIYKRGGVIGAVCHGPAMLPGI 154 (247)
T ss_dssp GCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGC
T ss_pred hCCEEEEeCCCchhhhcccCHHHHHHHHHHHHcCCEEEEEChHHHHHHHh
Confidence 689999999986532 233467778774 6789998 9999999875
No 57
>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}
Probab=96.63 E-value=0.0023 Score=54.03 Aligned_cols=90 Identities=16% Similarity=0.191 Sum_probs=57.5
Q ss_pred CCCCcEEEEeCCchH---HHHHHHHHHHhhhhhcCCceEEEEeCCc------------------------------ccHH
Q 037843 10 NDKNPIVVIDNYDSF---TYNLCQYMGELELELSQGYHFEVYRNDE------------------------------LTVA 56 (203)
Q Consensus 10 ~~~~~i~iid~~~~~---~~~l~~~l~~~~~~~~~g~~~~v~~~~~------------------------------~~~~ 56 (203)
.++++|+|+-..... .....+.|+.. |+++.++..+. .+.+
T Consensus 203 ~~~~ki~ill~dg~~~~e~~~~~~~l~~a------g~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~ 276 (396)
T 3uk7_A 203 GANKRILFLCGDYMEDYEVKVPFQSLQAL------GCQVDAVCPEKKAGDRCPTAIHDFEGDQTYSEKPGHTFALTTNFD 276 (396)
T ss_dssp CCCCEEEEECCTTEEHHHHHHHHHHHHHH------TCEEEEECTTCCTTCEECEEEEECCSSSSCEEEECCCEECCSCGG
T ss_pred hccceEEEEecCCCcchhHHHHHHHHHHC------CCEEEEECCCCCCCcccccccccccccchhhhcCCceeeccCCHH
Confidence 456788888543211 22345677777 88887764321 1223
Q ss_pred HHhccCCCEEEECCCCCCC--CCcchHHHHHHH-hCCCCcee--ehhHHHHHHH
Q 037843 57 ELKRKKPRGVVISPGPGAP--QESGISFRTVLE-LGPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 57 ~l~~~~~dgiil~GG~~~~--~~~~~~~~~i~~-~~~~~Pil--ClG~Qlla~a 105 (203)
++...++|.||++||.+.. .....+.+++++ ..+++||. |-|-++|+.+
T Consensus 277 ~~~~~~~D~livpGg~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~g~~~La~a 330 (396)
T 3uk7_A 277 DLVSSSYDALVIPGGRAPEYLALNEHVLNIVKEFMNSEKPVASICHGQQILAAA 330 (396)
T ss_dssp GCCGGGCSEEEECCBSHHHHHTTCHHHHHHHHHHHHTTCCEEEEGGGHHHHHHT
T ss_pred HCCcccCCEEEECCCcchhhhccCHHHHHHHHHHHHCCCEEEEEchHHHHHHHc
Confidence 3322368999999997522 123446777877 46789999 9999999986
No 58
>3er6_A Putative transcriptional regulator protein; structural genomics, unknown function, DNA-binding, transcription regulation, PSI-2; 1.90A {Vibrio parahaemolyticus}
Probab=96.53 E-value=0.0032 Score=48.50 Aligned_cols=44 Identities=14% Similarity=0.043 Sum_probs=33.6
Q ss_pred CCCEEEECCCCCCCC----CcchHHHHHHHh-CCCCcee--ehhHHHHHHH
Q 037843 62 KPRGVVISPGPGAPQ----ESGISFRTVLEL-GPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 62 ~~dgiil~GG~~~~~----~~~~~~~~i~~~-~~~~Pil--ClG~Qlla~a 105 (203)
++|.|||+||.+... ....+.+++++. .++++|. |-|-.+|+.+
T Consensus 74 ~~D~livpGg~~~~~~~~~~~~~l~~~l~~~~~~g~~iaaIC~G~~~La~a 124 (209)
T 3er6_A 74 FTNILIIGSIGDPLESLDKIDPALFDWIRELHLKGSKIVAIDTGIFVVAKA 124 (209)
T ss_dssp CCSEEEECCCSCHHHHGGGSCHHHHHHHHHHHHTTCEEEEETTHHHHHHHH
T ss_pred CCCEEEECCCCCchhhhccCCHHHHHHHHHHHhcCCEEEEEcHHHHHHHHc
Confidence 689999999875322 234567788874 6778988 9999999986
No 59
>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}
Probab=96.36 E-value=0.0036 Score=52.83 Aligned_cols=87 Identities=17% Similarity=0.207 Sum_probs=56.1
Q ss_pred CCcEEEEeCCchH----HHHHHHHHHHhhhhhcCCceEEEEeCCc------------------------------ccHHH
Q 037843 12 KNPIVVIDNYDSF----TYNLCQYMGELELELSQGYHFEVYRNDE------------------------------LTVAE 57 (203)
Q Consensus 12 ~~~i~iid~~~~~----~~~l~~~l~~~~~~~~~g~~~~v~~~~~------------------------------~~~~~ 57 (203)
+++|+|+-.. +| .....+.|++. |+++.++.... .+.++
T Consensus 12 ~~kv~ill~d-g~e~~E~~~~~~~l~~a------g~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~ 84 (396)
T 3uk7_A 12 SRTVLILCGD-YMEDYEVMVPFQALQAF------GITVHTVCPGKKAGDSCPTAVHDFCGHQTYFESRGHNFTLNATFDE 84 (396)
T ss_dssp CCEEEEECCT-TEEHHHHHHHHHHHHHT------TCEEEEECTTCCTTCEECEEEEECSSSSSCEEEECCCEECCSCGGG
T ss_pred CCeEEEEeCC-CccHHHHHHHHHHHHHC------CCEEEEEcCCCcCCCcccccccccccchhhhhccCceeeccCChhh
Confidence 4678877543 23 22345677777 88887764321 12233
Q ss_pred HhccCCCEEEECCCCCCC--CCcchHHHHHHH-hCCCCcee--ehhHHHHHHH
Q 037843 58 LKRKKPRGVVISPGPGAP--QESGISFRTVLE-LGPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 58 l~~~~~dgiil~GG~~~~--~~~~~~~~~i~~-~~~~~Pil--ClG~Qlla~a 105 (203)
+...+||.||++||.+.. .....+.+++++ ..+++||. |-|-++|+.+
T Consensus 85 ~~~~~~D~livpGG~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~La~a 137 (396)
T 3uk7_A 85 VDLSKYDGLVIPGGRAPEYLALTASVVELVKEFSRSGKPIASICHGQLILAAA 137 (396)
T ss_dssp CCGGGCSEEEECCBSHHHHHTTCHHHHHHHHHHHHTTCCEEEETTTHHHHHHT
T ss_pred cCcccCCEEEECCCcchhhcccCHHHHHHHHHHHHcCCEEEEECchHHHHHhc
Confidence 322368999999997531 123346777877 46789998 9999999986
No 60
>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A {Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A* 3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A* 4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A* 1gg9_A* 1ggf_A* ...
Probab=96.30 E-value=0.0055 Score=55.64 Aligned_cols=86 Identities=13% Similarity=0.108 Sum_probs=56.6
Q ss_pred CCcEEEEeCCchH----HHHHHHHHHHhhhhhcCCceEEEEeCCc--------------ccHHHHhccCCCEEEECCCCC
Q 037843 12 KNPIVVIDNYDSF----TYNLCQYMGELELELSQGYHFEVYRNDE--------------LTVAELKRKKPRGVVISPGPG 73 (203)
Q Consensus 12 ~~~i~iid~~~~~----~~~l~~~l~~~~~~~~~g~~~~v~~~~~--------------~~~~~l~~~~~dgiil~GG~~ 73 (203)
.++|+||-.. +| ...+.+.|++. |+.+.++-... .+.++.....||+|||+|| +
T Consensus 600 grKVaILlaD-GfEe~El~~pvdaLr~A------G~~V~vVS~~~g~V~gs~G~~V~aD~t~~~v~s~~fDALVVPGG-g 671 (753)
T 3ttv_A 600 GRVVAILLND-EVRSADLLAILKALKAK------GVHAKLLYSRMGEVTADDGTVLPIAATFAGAPSLTVDAVIVPCG-N 671 (753)
T ss_dssp TCEEEEECCT-TCCHHHHHHHHHHHHHH------TCEEEEEESSSSEEECTTSCEEECCEETTTSCGGGCSEEEECCS-C
T ss_pred CCEEEEEecC-CCCHHHHHHHHHHHHHC------CCEEEEEEcCCCeEEeCCCCEEecccchhhCCCcCCCEEEECCC-C
Confidence 3678887332 23 23456778887 88888775421 1223333335899999999 4
Q ss_pred CC--CCcchHHHHHHH-hCCCCcee--ehhHHHHHHH
Q 037843 74 AP--QESGISFRTVLE-LGPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 74 ~~--~~~~~~~~~i~~-~~~~~Pil--ClG~Qlla~a 105 (203)
.. .....+..++++ +.+++||- |-|-++|+.+
T Consensus 672 ~~~Lr~d~~vl~~Vre~~~~gKpIAAIC~Gp~lLa~A 708 (753)
T 3ttv_A 672 IADIADNGDANYYLMEAYKHLKPIALAGDARKFKATI 708 (753)
T ss_dssp GGGTTTCHHHHHHHHHHHHTTCCEEEEGGGGGGGGGG
T ss_pred hHHhhhCHHHHHHHHHHHhcCCeEEEECchHHHHHHc
Confidence 32 233456788888 47889998 9999999876
No 61
>3noq_A THIJ/PFPI family protein; DJ-1 superfamily, isocyanide hydratase, isonitrIle hydratase; HET: NHE; 1.00A {Pseudomonas fluorescens} PDB: 3noo_A 3non_A 3nor_A* 3nov_A
Probab=96.15 E-value=0.0099 Score=46.51 Aligned_cols=88 Identities=11% Similarity=0.073 Sum_probs=54.1
Q ss_pred CCCCcEEEEeCCchHH----HHHHHHHHHhhhhhcCCceEEEEeCCc--------------ccHHHHhccCCCEEEECCC
Q 037843 10 NDKNPIVVIDNYDSFT----YNLCQYMGELELELSQGYHFEVYRNDE--------------LTVAELKRKKPRGVVISPG 71 (203)
Q Consensus 10 ~~~~~i~iid~~~~~~----~~l~~~l~~~~~~~~~g~~~~v~~~~~--------------~~~~~l~~~~~dgiil~GG 71 (203)
+|+++|+|+-+. +|. ....+.|+.. .|+++.++..+. .+.+++. ++|.||++||
T Consensus 3 ~m~~~V~ill~~-gf~~~e~~~p~evl~~~-----~~~~v~~vs~~~~~V~~~~G~~v~~d~~l~~~~--~~D~livpGG 74 (231)
T 3noq_A 3 HMAVQIGFLLFP-EVQQLDLTGPHDVLASL-----PDVQVHLIWKEPGPVVASSGLVLQATTSFADCP--PLDVICIPGG 74 (231)
T ss_dssp -CCEEEEEECCT-TCCHHHHHHHHHHHTTS-----TTEEEEEEESSSEEEECTTSCEEEECEETTTCC--CCSEEEECCS
T ss_pred CCcEEEEEEEeC-CCcHHHHHHHHHHHHcC-----CCCEEEEEECCCCcEEcCCCCEEecccChhHCC--cCCEEEECCC
Confidence 356788888543 332 2234555542 167776654321 1122322 5899999999
Q ss_pred CCCC--CCcchHHHHHHH-hCCCCcee--ehhHHHHHHH
Q 037843 72 PGAP--QESGISFRTVLE-LGPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 72 ~~~~--~~~~~~~~~i~~-~~~~~Pil--ClG~Qlla~a 105 (203)
++.. .....+.+++++ ..++++|. |-|-.+|+.+
T Consensus 75 ~g~~~~~~~~~l~~~lr~~~~~g~~v~aiC~G~~~La~a 113 (231)
T 3noq_A 75 TGVGALMEDPQALAFIRQQAARARYVTSVSTGSLVLGAA 113 (231)
T ss_dssp TTHHHHTTCHHHHHHHHHHHTTCSEEEEETTHHHHHHHT
T ss_pred CChhhhccCHHHHHHHHHHHhcCCEEEEECHHHHHHHHc
Confidence 7642 123456788887 47788988 9999999975
No 62
>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413}
Probab=96.13 E-value=0.0064 Score=50.98 Aligned_cols=88 Identities=18% Similarity=0.203 Sum_probs=54.9
Q ss_pred CCCcEEEEeCCchH----HHHHHHHHHHhhhhhcCCceEEEEeCCcc----------------cHHHHhccCCCEEEECC
Q 037843 11 DKNPIVVIDNYDSF----TYNLCQYMGELELELSQGYHFEVYRNDEL----------------TVAELKRKKPRGVVISP 70 (203)
Q Consensus 11 ~~~~i~iid~~~~~----~~~l~~~l~~~~~~~~~g~~~~v~~~~~~----------------~~~~l~~~~~dgiil~G 70 (203)
++++|+|+-+. +| .......|+.. |+++.++..+.. +.+++...+||.|||+|
T Consensus 9 ~mkkV~ILl~d-gf~~~El~~p~dvL~~A------g~~v~vvS~~~g~~V~ss~G~~~i~~d~~l~~v~~~~~DaLiVPG 81 (365)
T 3fse_A 9 GKKKVAILIEQ-AVEDTEFIIPCNGLKQA------GFEVVVLGSRMNEKYKGKRGRLSTQADGTTTEAIASEFDAVVIPG 81 (365)
T ss_dssp --CEEEEECCT-TBCHHHHHHHHHHHHHT------TCEEEEEESSSSCCEECTTSCCEECCSEETTTCCGGGCSEEEECC
T ss_pred CceEEEEEECC-CCcHHHHHHHHHHHHHC------CCEEEEEECCCCceeecCCCceEEeCCCCHhhCCCcCCCEEEEEC
Confidence 35778888543 23 22355677776 788777643211 12222222589999999
Q ss_pred CCCCC--CCcchHHHHHHHh-CCCCcee--ehhHHHHHHH
Q 037843 71 GPGAP--QESGISFRTVLEL-GPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 71 G~~~~--~~~~~~~~~i~~~-~~~~Pil--ClG~Qlla~a 105 (203)
|.+.. .....+.++++++ .+++||. |-|-.+|+.+
T Consensus 82 G~g~~~l~~~~~l~~~Lr~~~~~gk~IaAIC~G~~lLA~A 121 (365)
T 3fse_A 82 GMAPDKMRRNPNTVRFVQEAMEQGKLVAAVCHGPQVLIEG 121 (365)
T ss_dssp BTHHHHHTTCHHHHHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred CcchhhccCCHHHHHHHHHHHHCCCEEEEECHHHHHHHHc
Confidence 97531 1234467778774 6789998 9999999985
No 63
>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A*
Probab=96.11 E-value=0.0092 Score=53.80 Aligned_cols=88 Identities=11% Similarity=0.111 Sum_probs=58.5
Q ss_pred CCcEEEEeCC-chHH----HHHHHHHHHhhhhhcCCceEEEEeCCc-----ccHHHHhccCCCEEEECCCCCC-------
Q 037843 12 KNPIVVIDNY-DSFT----YNLCQYMGELELELSQGYHFEVYRNDE-----LTVAELKRKKPRGVVISPGPGA------- 74 (203)
Q Consensus 12 ~~~i~iid~~-~~~~----~~l~~~l~~~~~~~~~g~~~~v~~~~~-----~~~~~l~~~~~dgiil~GG~~~------- 74 (203)
+++|+|+-.. ++|. ..+.++|++. |+.++++-... .+.++.....||+|||+||...
T Consensus 529 g~kVaIL~a~~dGfe~~E~~~~~~~L~~a------G~~V~vVs~~~g~~vD~t~~~~~s~~fDAVvlPGG~~g~~~~~~~ 602 (688)
T 2iuf_A 529 GLKVGLLASVNKPASIAQGAKLQVALSSV------GVDVVVVAERXANNVDETYSASDAVQFDAVVVADGAEGLFGADSF 602 (688)
T ss_dssp TCEEEEECCTTCHHHHHHHHHHHHHHGGG------TCEEEEEESSCCTTCCEESTTCCGGGCSEEEECTTCGGGCCTTTT
T ss_pred CCEEEEEecCCCCCcHHHHHHHHHHHHHC------CCEEEEEeccCCcccccchhcCCccccCeEEecCCCccccccccc
Confidence 3679888651 3443 2355677777 99999885421 2223333347999999999533
Q ss_pred ---------C---CCcchHHHHHHH-hCCCCcee--ehhHHHHHHH
Q 037843 75 ---------P---QESGISFRTVLE-LGPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 75 ---------~---~~~~~~~~~i~~-~~~~~Pil--ClG~Qlla~a 105 (203)
+ ...+....++++ +..+|||- |-|-++|..+
T Consensus 603 ~~~~~~~~~~~~L~~~~~~~~~v~~~~~~gKpIaAIc~ap~vL~~a 648 (688)
T 2iuf_A 603 TVEPSAGSGASTLYPAGRPLNILLDAFRFGKTVGALGSGSDALESG 648 (688)
T ss_dssp TCCCCTTSCCCSSSCTTHHHHHHHHHHHHTCEEEEEGGGHHHHHHT
T ss_pred ccccccccchhhcccChHHHHHHHHHHHcCCEEEEECchHHHHHHc
Confidence 2 233456778887 56789998 9999988865
No 64
>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*
Probab=95.87 E-value=0.0088 Score=47.31 Aligned_cols=44 Identities=14% Similarity=0.054 Sum_probs=34.1
Q ss_pred CCCEEEECCCCCCCC---CcchHHHHHHHh-CCCCcee--ehhHHHHHHH
Q 037843 62 KPRGVVISPGPGAPQ---ESGISFRTVLEL-GPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 62 ~~dgiil~GG~~~~~---~~~~~~~~i~~~-~~~~Pil--ClG~Qlla~a 105 (203)
+||+|+|+||.+... ....+.++++++ .+++||- |-|-.+|+.+
T Consensus 98 ~yD~l~vpGG~~~~~~l~~~~~l~~~l~~~~~~gk~iaaIC~G~~~La~a 147 (244)
T 3kkl_A 98 DYKVFFASAGHGALFDYPKAKNLQDIASKIYANGGVIAAICHGPLLFDGL 147 (244)
T ss_dssp GCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred hCCEEEEcCCCchhhhcccCHHHHHHHHHHHHcCCEEEEECHHHHHHHHh
Confidence 689999999986532 234467778774 6789998 9999999876
No 65
>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A
Probab=95.83 E-value=0.0063 Score=47.93 Aligned_cols=44 Identities=14% Similarity=0.041 Sum_probs=33.8
Q ss_pred CCCEEEECCCCCCCC---CcchHHHHHHHh-CCCCcee--ehhHHHHHHH
Q 037843 62 KPRGVVISPGPGAPQ---ESGISFRTVLEL-GPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 62 ~~dgiil~GG~~~~~---~~~~~~~~i~~~-~~~~Pil--ClG~Qlla~a 105 (203)
+||+|||+||.+... ....+.++++++ .+++||. |-|-.+|+.+
T Consensus 98 ~~D~livpGG~~~~~~l~~~~~l~~~l~~~~~~gk~vaaIC~G~~~La~a 147 (243)
T 1rw7_A 98 DYQIFFASAGHGTLFDYPKAKDLQDIASEIYANGGVVAAVCHGPAIFDGL 147 (243)
T ss_dssp GEEEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred hCcEEEECCCCCchhhcccCHHHHHHHHHHHHcCCEEEEECCCHHHHHhc
Confidence 589999999977432 233467788874 6789998 9999998876
No 66
>4gdh_A DJ-1, uncharacterized protein C22E12.03C; unknown function, cysteine oxidation; 1.05A {Schizosaccharomyces pombe} PDB: 4ge3_A 4ge0_A
Probab=95.36 E-value=0.019 Score=43.54 Aligned_cols=43 Identities=14% Similarity=0.109 Sum_probs=28.5
Q ss_pred CCCEEEECCCCCCCC---CcchHHHHHHHh-CC-CCcee--ehhHHHHHHH
Q 037843 62 KPRGVVISPGPGAPQ---ESGISFRTVLEL-GP-TMPLF--CMGLKCIGEA 105 (203)
Q Consensus 62 ~~dgiil~GG~~~~~---~~~~~~~~i~~~-~~-~~Pil--ClG~Qlla~a 105 (203)
+||+|||+||.+.+. +...+.++++++ .+ ++++- |-|.. ++.+
T Consensus 73 ~yD~lvvPGG~~~~~~l~~~~~l~~~l~~~~~~~~k~iaaiC~g~~-l~~a 122 (194)
T 4gdh_A 73 QYDIAIIPGGGLGAKTLSTTPFVQQVVKEFYKKPNKWIGMICAGTL-TAKT 122 (194)
T ss_dssp HCSEEEECCCHHHHHHHHTCHHHHHHHHHHTTCTTCEEEEEGGGGH-HHHH
T ss_pred cCCEEEECCCchhHhHhhhCHHHHHHHHHhhhcCCceEEeeccccc-chhh
Confidence 589999999854322 334567888885 33 67776 98874 4443
No 67
>1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET: HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3
Probab=95.20 E-value=0.017 Score=52.48 Aligned_cols=89 Identities=10% Similarity=0.054 Sum_probs=56.2
Q ss_pred CcEEEEeCCchH---HHHHHHHHHHhhhhhcCCceEEEEeCCc--------------ccHHHHhccCCCEEEECCCCCCC
Q 037843 13 NPIVVIDNYDSF---TYNLCQYMGELELELSQGYHFEVYRNDE--------------LTVAELKRKKPRGVVISPGPGAP 75 (203)
Q Consensus 13 ~~i~iid~~~~~---~~~l~~~l~~~~~~~~~g~~~~v~~~~~--------------~~~~~l~~~~~dgiil~GG~~~~ 75 (203)
++|+||-..+.. .......|+.. |+.+.++.... .+.+++....||+|||+||.+.+
T Consensus 535 rkVaILl~dGfe~~El~~p~dvL~~A------G~~V~ivS~~gg~V~ss~G~~v~~d~~l~~v~~~~yDaViVPGG~~~~ 608 (715)
T 1sy7_A 535 RRVAIIIADGYDNVAYDAAYAAISAN------QAIPLVIGPRRSKVTAANGSTVQPHHHLEGFRSTMVDAIFIPGGAKAA 608 (715)
T ss_dssp CEEEEECCTTBCHHHHHHHHHHHHHT------TCEEEEEESCSSCEEBTTSCEECCSEETTTCCGGGSSEEEECCCHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHHhc------CCEEEEEECCCCceecCCCceEecccccccCCcccCCEEEEcCCcccH
Confidence 578888543211 22355667776 88888775421 11222222258999999985332
Q ss_pred C---CcchHHHHHHH-hCCCCcee--ehhHHHHHHHhC
Q 037843 76 Q---ESGISFRTVLE-LGPTMPLF--CMGLKCIGEALE 107 (203)
Q Consensus 76 ~---~~~~~~~~i~~-~~~~~Pil--ClG~Qlla~a~g 107 (203)
. ....+..++++ ..+++||- |-|-.+|+.++|
T Consensus 609 ~~l~~~~~l~~~Lr~~~~~gK~IaAIC~G~~lLA~AlG 646 (715)
T 1sy7_A 609 ETLSKNGRALHWIREAFGHLKAIGATGEAVDLVAKAIA 646 (715)
T ss_dssp HHHHTCHHHHHHHHHHHHTTCEEEEETTHHHHHHHHHC
T ss_pred hhhccCHHHHHHHHHHHhCCCEEEEECHHHHHHHHccC
Confidence 2 23446777877 46789998 999999999854
No 68
>3bhn_A THIJ/PFPI domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.76A {Shewanella loihica pv-4}
Probab=94.92 E-value=0.016 Score=45.51 Aligned_cols=91 Identities=18% Similarity=0.257 Sum_probs=48.9
Q ss_pred ccccCCCCCcEEEEeCCchHH---HHHHHHHHHhhhhhcCC--ceEEEEeCCc--------------ccHHHHhccCCCE
Q 037843 5 LKLSKNDKNPIVVIDNYDSFT---YNLCQYMGELELELSQG--YHFEVYRNDE--------------LTVAELKRKKPRG 65 (203)
Q Consensus 5 ~~~~~~~~~~i~iid~~~~~~---~~l~~~l~~~~~~~~~g--~~~~v~~~~~--------------~~~~~l~~~~~dg 65 (203)
.++|...+++|+|+-+.+... ....+.|+.. + +++.++. +. .+.++.. ++|.
T Consensus 13 ~~~~~~~~~kV~ill~dGf~~~e~~~p~dvl~~~------~~~~~v~~vs-~~~~V~ss~G~~v~~d~~l~~~~--~~D~ 83 (236)
T 3bhn_A 13 ENLYFQGMYKVGIVLFDDFTDVDFFLMNDLLGRT------SDSWTVRILG-TKPEHHSQLGMTVKTDGHVSEVK--EQDV 83 (236)
T ss_dssp -------CEEEEEECCTTBCHHHHHHHHHHHTTC------SSSEEEEEEE-SSSEEEBTTCCEEECSEEGGGGG--GCSE
T ss_pred hhhccCCCCEEEEEeCCCChHHHHHHHHHHHHcC------CCCEEEEEEE-CCCcEEecCCcEEecCccccccc--CCCE
Confidence 456777778898885432112 2233455443 3 4555443 11 1223322 6899
Q ss_pred EEECCC-CCCCC--CcchHHHHHHHhCCCC-cee--ehhHHHHHHH
Q 037843 66 VVISPG-PGAPQ--ESGISFRTVLELGPTM-PLF--CMGLKCIGEA 105 (203)
Q Consensus 66 iil~GG-~~~~~--~~~~~~~~i~~~~~~~-Pil--ClG~Qlla~a 105 (203)
|||+|| ++... ....+.+++ ...+++ +|. |-|-.+|+.+
T Consensus 84 liVPGG~~g~~~l~~~~~l~~~L-~~~~~~~~IaaIC~G~~lLa~A 128 (236)
T 3bhn_A 84 VLITSGYRGIPAALQDENFMSAL-KLDPSRQLIGSICAGSFVLHEL 128 (236)
T ss_dssp EEECCCTTHHHHHHTCHHHHHHC-CCCTTTCEEEEETTHHHHHHHT
T ss_pred EEEcCCccCHhhhccCHHHHHHH-HhCCCCCEEEEEcHHHHHHHHc
Confidence 999999 55321 233456677 655566 887 9999999986
No 69
>3ewn_A THIJ/PFPI family protein; monomer, PSI nysgrc, structural genomics, protein structure initiative; 1.65A {Pseudomonas syringae PV}
Probab=94.63 E-value=0.085 Score=41.78 Aligned_cols=44 Identities=14% Similarity=0.179 Sum_probs=33.7
Q ss_pred CCCEEEECCCC-CCC--CCcchHHHHHHH-hCCCCcee--ehhHHHHHHH
Q 037843 62 KPRGVVISPGP-GAP--QESGISFRTVLE-LGPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 62 ~~dgiil~GG~-~~~--~~~~~~~~~i~~-~~~~~Pil--ClG~Qlla~a 105 (203)
.||.|||+||. +.. .....+.+++++ ..++++|. |-|-.+|+.+
T Consensus 84 ~yD~liVPGG~~g~~~l~~~~~l~~~Lr~~~~~gk~IaaICtG~~lLa~A 133 (253)
T 3ewn_A 84 DLTVLFAPGGTDGTLAAASDAETLAFMADRGARAKYITSVCSGSLILGAA 133 (253)
T ss_dssp SCSEEEECCBSHHHHHHTTCHHHHHHHHHHHTTCSEEEEETTHHHHHHHT
T ss_pred CCCEEEECCCccchhhhccCHHHHHHHHHHHHcCCEEEEEChHHHHHHHc
Confidence 57999999987 532 233456788887 47788988 9999999986
No 70
>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A
Probab=94.58 E-value=0.044 Score=44.38 Aligned_cols=46 Identities=13% Similarity=0.036 Sum_probs=34.5
Q ss_pred cCCCEEEECCCCCCCCC---cchHHHHHHHh-CCCCcee--ehhHHHHHHHh
Q 037843 61 KKPRGVVISPGPGAPQE---SGISFRTVLEL-GPTMPLF--CMGLKCIGEAL 106 (203)
Q Consensus 61 ~~~dgiil~GG~~~~~~---~~~~~~~i~~~-~~~~Pil--ClG~Qlla~a~ 106 (203)
.+||+|||+||.+...+ ...+.++++++ .++++|. |-|-.+|+.+-
T Consensus 144 ~~yD~livPGG~g~~~~l~~~~~l~~~l~~~~~~gk~VaaIC~Gp~~La~a~ 195 (291)
T 1n57_A 144 SEYAAIFVPGGHGALIGLPESQDVAAALQWAIKNDRFVISLCHGPAAFLALR 195 (291)
T ss_dssp CSEEEEEECCSGGGGSSGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGGT
T ss_pred ccCCEEEecCCcchhhhhhhCHHHHHHHHHHHHcCCEEEEECccHHHHHhhc
Confidence 36899999999775422 23467788874 6788998 99999887763
No 71
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=94.52 E-value=0.25 Score=33.61 Aligned_cols=77 Identities=19% Similarity=0.282 Sum_probs=46.9
Q ss_pred CCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhcc-CCCEEEECCCCCCCC-Ccc-hHHHHHHH
Q 037843 11 DKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRK-KPRGVVISPGPGAPQ-ESG-ISFRTVLE 87 (203)
Q Consensus 11 ~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~-~~dgiil~GG~~~~~-~~~-~~~~~i~~ 87 (203)
.+.+|+|+|....+...+.+.|+.. |+.+............+... .+|.||+--. .+. ..+ .+.+.+++
T Consensus 4 ~~~~ilivdd~~~~~~~l~~~L~~~------g~~v~~~~~~~~a~~~l~~~~~~dlvi~d~~--l~~~~~g~~~~~~l~~ 75 (132)
T 2rdm_A 4 EAVTILLADDEAILLLDFESTLTDA------GFLVTAVSSGAKAIEMLKSGAAIDGVVTDIR--FCQPPDGWQVARVARE 75 (132)
T ss_dssp SSCEEEEECSSHHHHHHHHHHHHHT------TCEEEEESSHHHHHHHHHTTCCCCEEEEESC--CSSSSCHHHHHHHHHH
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHc------CCEEEEECCHHHHHHHHHcCCCCCEEEEeee--CCCCCCHHHHHHHHHh
Confidence 3578999998877778888888887 88876543211112233343 6899888322 121 122 23455555
Q ss_pred hCCCCcee
Q 037843 88 LGPTMPLF 95 (203)
Q Consensus 88 ~~~~~Pil 95 (203)
.....|++
T Consensus 76 ~~~~~~ii 83 (132)
T 2rdm_A 76 IDPNMPIV 83 (132)
T ss_dssp HCTTCCEE
T ss_pred cCCCCCEE
Confidence 55678888
No 72
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=94.40 E-value=0.29 Score=33.24 Aligned_cols=76 Identities=14% Similarity=0.236 Sum_probs=46.4
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELGP 90 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~~ 90 (203)
+.+|+|+|....+...+.+.++.. |..+..........+.+....+|.||+--. .+...+ .+.+.+++...
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~------g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~--l~~~~g~~~~~~l~~~~~ 78 (130)
T 3eod_A 7 GKQILIVEDEQVFRSLLDSWFSSL------GATTVLAADGVDALELLGGFTPDLMICDIA--MPRMNGLKLLEHIRNRGD 78 (130)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHHT------TCEEEEESCHHHHHHHHTTCCCSEEEECCC-------CHHHHHHHHHTTC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhC------CceEEEeCCHHHHHHHHhcCCCCEEEEecC--CCCCCHHHHHHHHHhcCC
Confidence 468999998877788888899888 888765432111122333346899998322 111222 24555666556
Q ss_pred CCcee
Q 037843 91 TMPLF 95 (203)
Q Consensus 91 ~~Pil 95 (203)
..|++
T Consensus 79 ~~~ii 83 (130)
T 3eod_A 79 QTPVL 83 (130)
T ss_dssp CCCEE
T ss_pred CCCEE
Confidence 78988
No 73
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=94.30 E-value=0.22 Score=34.38 Aligned_cols=80 Identities=9% Similarity=0.200 Sum_probs=48.9
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHH--h
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLE--L 88 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~--~ 88 (203)
+++|+|||........+.+.|+.. |+.+..........+.+....+|.||+--. .+...+ .+.+.+++ .
T Consensus 6 ~~~iLivdd~~~~~~~l~~~l~~~------g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~--l~~~~g~~~~~~l~~~~~ 77 (140)
T 3grc_A 6 RPRILICEDDPDIARLLNLMLEKG------GFDSDMVHSAAQALEQVARRPYAAMTVDLN--LPDQDGVSLIRALRRDSR 77 (140)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHHT------TCEEEEECSHHHHHHHHHHSCCSEEEECSC--CSSSCHHHHHHHHHTSGG
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHC------CCeEEEECCHHHHHHHHHhCCCCEEEEeCC--CCCCCHHHHHHHHHhCcc
Confidence 578999998877778888889888 888755432111123333457899998321 122222 23455555 3
Q ss_pred CCCCcee-ehhH
Q 037843 89 GPTMPLF-CMGL 99 (203)
Q Consensus 89 ~~~~Pil-ClG~ 99 (203)
....|++ .-+.
T Consensus 78 ~~~~~ii~~s~~ 89 (140)
T 3grc_A 78 TRDLAIVVVSAN 89 (140)
T ss_dssp GTTCEEEEECTT
T ss_pred cCCCCEEEEecC
Confidence 4578998 4443
No 74
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=94.22 E-value=0.18 Score=35.69 Aligned_cols=79 Identities=22% Similarity=0.291 Sum_probs=47.2
Q ss_pred CCCCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHH
Q 037843 9 KNDKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLE 87 (203)
Q Consensus 9 ~~~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~ 87 (203)
...+.+|+|||....+...+.+.|+.. |+.+........-.+.+....+|.||+--. .+...+ .+.+.+++
T Consensus 4 ~~~~~~ILivdd~~~~~~~l~~~L~~~------g~~v~~~~~~~~al~~l~~~~~dlii~D~~--l~~~~g~~~~~~lr~ 75 (154)
T 3gt7_A 4 SNRAGEILIVEDSPTQAEHLKHILEET------GYQTEHVRNGREAVRFLSLTRPDLIISDVL--MPEMDGYALCRWLKG 75 (154)
T ss_dssp ---CCEEEEECSCHHHHHHHHHHHHTT------TCEEEEESSHHHHHHHHTTCCCSEEEEESC--CSSSCHHHHHHHHHH
T ss_pred ccCCCcEEEEeCCHHHHHHHHHHHHHC------CCEEEEeCCHHHHHHHHHhCCCCEEEEeCC--CCCCCHHHHHHHHHh
Confidence 344678999998887788888899888 888765432111122333447899998321 122222 23455665
Q ss_pred hC--CCCcee
Q 037843 88 LG--PTMPLF 95 (203)
Q Consensus 88 ~~--~~~Pil 95 (203)
.. ..+|++
T Consensus 76 ~~~~~~~pii 85 (154)
T 3gt7_A 76 QPDLRTIPVI 85 (154)
T ss_dssp STTTTTSCEE
T ss_pred CCCcCCCCEE
Confidence 42 578988
No 75
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=94.17 E-value=0.19 Score=34.59 Aligned_cols=78 Identities=9% Similarity=0.003 Sum_probs=47.3
Q ss_pred CCCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHh
Q 037843 10 NDKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLEL 88 (203)
Q Consensus 10 ~~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~ 88 (203)
+.+.+|+|||....+...+.+.|+.. |..+........-.+.+....+|.||+--.- +...+ .+.+.+++.
T Consensus 5 ~~~~~ilivdd~~~~~~~l~~~L~~~------~~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l--~~~~g~~~~~~l~~~ 76 (137)
T 3hdg_A 5 EVALKILIVEDDTDAREWLSTIISNH------FPEVWSAGDGEEGERLFGLHAPDVIITDIRM--PKLGGLEMLDRIKAG 76 (137)
T ss_dssp --CCCEEEECSCHHHHHHHHHHHHTT------CSCEEEESSHHHHHHHHHHHCCSEEEECSSC--SSSCHHHHHHHHHHT
T ss_pred ccccEEEEEeCCHHHHHHHHHHHHhc------CcEEEEECCHHHHHHHHhccCCCEEEEeCCC--CCCCHHHHHHHHHhc
Confidence 34679999998877778888888876 8877655321111222333478999983321 22222 245556665
Q ss_pred CCCCcee
Q 037843 89 GPTMPLF 95 (203)
Q Consensus 89 ~~~~Pil 95 (203)
....|++
T Consensus 77 ~~~~~ii 83 (137)
T 3hdg_A 77 GAKPYVI 83 (137)
T ss_dssp TCCCEEE
T ss_pred CCCCcEE
Confidence 5678888
No 76
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=93.95 E-value=0.2 Score=34.59 Aligned_cols=78 Identities=15% Similarity=0.290 Sum_probs=46.8
Q ss_pred CCCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHH-
Q 037843 10 NDKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLE- 87 (203)
Q Consensus 10 ~~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~- 87 (203)
..+.+|+|||....+...+.+.|+.. |+.+............+....+|.||+--. .+...+ .+.+.+++
T Consensus 5 ~~~~~iLivdd~~~~~~~l~~~L~~~------g~~v~~~~~~~~a~~~l~~~~~dlii~d~~--l~~~~g~~~~~~l~~~ 76 (142)
T 3cg4_A 5 EHKGDVMIVDDDAHVRIAVKTILSDA------GFHIISADSGGQCIDLLKKGFSGVVLLDIM--MPGMDGWDTIRAILDN 76 (142)
T ss_dssp -CCCEEEEECSCHHHHHHHHHHHHHT------TCEEEEESSHHHHHHHHHTCCCEEEEEESC--CSSSCHHHHHHHHHHT
T ss_pred CCCCeEEEEcCCHHHHHHHHHHHHHC------CeEEEEeCCHHHHHHHHHhcCCCEEEEeCC--CCCCCHHHHHHHHHhh
Confidence 34678999998887788888999888 887655432111122333446888887322 111122 24555665
Q ss_pred -hCCCCcee
Q 037843 88 -LGPTMPLF 95 (203)
Q Consensus 88 -~~~~~Pil 95 (203)
.....|++
T Consensus 77 ~~~~~~pii 85 (142)
T 3cg4_A 77 SLEQGIAIV 85 (142)
T ss_dssp TCCTTEEEE
T ss_pred cccCCCCEE
Confidence 34568887
No 77
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=93.77 E-value=0.15 Score=35.28 Aligned_cols=76 Identities=16% Similarity=0.126 Sum_probs=46.8
Q ss_pred CCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhC
Q 037843 11 DKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELG 89 (203)
Q Consensus 11 ~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~ 89 (203)
++.+|+|||........+.+.|+.. |+.+..........+.+....+|.||+-- .+...+ .+.+.+++..
T Consensus 3 ~~~~iLivdd~~~~~~~l~~~L~~~------g~~v~~~~~~~~a~~~l~~~~~dlvi~d~---~~~~~g~~~~~~l~~~~ 73 (142)
T 2qxy_A 3 LTPTVMVVDESRITFLAVKNALEKD------GFNVIWAKNEQEAFTFLRREKIDLVFVDV---FEGEESLNLIRRIREEF 73 (142)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHGGG------TCEEEEESSHHHHHHHHTTSCCSEEEEEC---TTTHHHHHHHHHHHHHC
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhC------CCEEEEECCHHHHHHHHhccCCCEEEEeC---CCCCcHHHHHHHHHHHC
Confidence 3578999998877778888888887 88876543211112233334789999843 121111 2345555555
Q ss_pred CCCcee
Q 037843 90 PTMPLF 95 (203)
Q Consensus 90 ~~~Pil 95 (203)
...|++
T Consensus 74 ~~~pii 79 (142)
T 2qxy_A 74 PDTKVA 79 (142)
T ss_dssp TTCEEE
T ss_pred CCCCEE
Confidence 678988
No 78
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=93.74 E-value=0.33 Score=33.60 Aligned_cols=78 Identities=12% Similarity=0.262 Sum_probs=45.6
Q ss_pred CCCCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhc-cCCCEEEECCCCCCCC-Ccc-hHHHHH
Q 037843 9 KNDKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKR-KKPRGVVISPGPGAPQ-ESG-ISFRTV 85 (203)
Q Consensus 9 ~~~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~-~~~dgiil~GG~~~~~-~~~-~~~~~i 85 (203)
+..+.+|+|||....+...+.+.|+.. |+.+..........+.+.. ..+|.||+--. .+. ..+ .+.+.+
T Consensus 2 ~~~~~~ilivdd~~~~~~~l~~~L~~~------g~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~--l~~~~~g~~~~~~l 73 (140)
T 3h5i_A 2 SLKDKKILIVEDSKFQAKTIANILNKY------GYTVEIALTGEAAVEKVSGGWYPDLILMDIE--LGEGMDGVQTALAI 73 (140)
T ss_dssp ----CEEEEECSCHHHHHHHHHHHHHT------TCEEEEESSHHHHHHHHHTTCCCSEEEEESS--CSSSCCHHHHHHHH
T ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHHc------CCEEEEecChHHHHHHHhcCCCCCEEEEecc--CCCCCCHHHHHHHH
Confidence 334578999998887888888999888 8887654321111233333 46899888321 111 122 234555
Q ss_pred HHhCCCCcee
Q 037843 86 LELGPTMPLF 95 (203)
Q Consensus 86 ~~~~~~~Pil 95 (203)
++. .+.|++
T Consensus 74 ~~~-~~~~ii 82 (140)
T 3h5i_A 74 QQI-SELPVV 82 (140)
T ss_dssp HHH-CCCCEE
T ss_pred HhC-CCCCEE
Confidence 554 568887
No 79
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=93.53 E-value=0.24 Score=33.48 Aligned_cols=76 Identities=13% Similarity=0.253 Sum_probs=47.3
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHh--
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLEL-- 88 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~-- 88 (203)
+.+|+|+|....+...+.+.|+.. |+.+........-.+.+....+|.||+--. .+...+ .+.+.+++.
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~------g~~v~~~~~~~~a~~~l~~~~~dlii~D~~--l~~~~g~~~~~~l~~~~~ 74 (127)
T 3i42_A 3 LQQALIVEDYQAAAETFKELLEML------GFQADYVMSGTDALHAMSTRGYDAVFIDLN--LPDTSGLALVKQLRALPM 74 (127)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHT------TEEEEEESSHHHHHHHHHHSCCSEEEEESB--CSSSBHHHHHHHHHHSCC
T ss_pred cceEEEEcCCHHHHHHHHHHHHHc------CCCEEEECCHHHHHHHHHhcCCCEEEEeCC--CCCCCHHHHHHHHHhhhc
Confidence 468999998877788888999888 887765432111122333447899998321 111222 245556665
Q ss_pred CCCCcee
Q 037843 89 GPTMPLF 95 (203)
Q Consensus 89 ~~~~Pil 95 (203)
....|++
T Consensus 75 ~~~~~ii 81 (127)
T 3i42_A 75 EKTSKFV 81 (127)
T ss_dssp SSCCEEE
T ss_pred cCCCCEE
Confidence 5678888
No 80
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=93.51 E-value=0.21 Score=34.67 Aligned_cols=80 Identities=11% Similarity=0.167 Sum_probs=46.0
Q ss_pred cCCCCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcc--cHHHHhccCCCEEEECCCCCCCCCcc-hHHHH
Q 037843 8 SKNDKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDEL--TVAELKRKKPRGVVISPGPGAPQESG-ISFRT 84 (203)
Q Consensus 8 ~~~~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~--~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~ 84 (203)
|+..+.+|+|||........+.+.|+.. |..+.+...... ..+.+....+|.||+--. .+...+ .+.+.
T Consensus 1 M~~~~~~ILivdd~~~~~~~l~~~L~~~------~~~~~v~~~~~~~~a~~~l~~~~~dlii~D~~--l~~~~g~~~~~~ 72 (144)
T 3kht_A 1 MSLRSKRVLVVEDNPDDIALIRRVLDRK------DIHCQLEFVDNGAKALYQVQQAKYDLIILDIG--LPIANGFEVMSA 72 (144)
T ss_dssp ----CEEEEEECCCHHHHHHHHHHHHHT------TCCEEEEEESSHHHHHHHHTTCCCSEEEECTT--CGGGCHHHHHHH
T ss_pred CCCCCCEEEEEeCCHHHHHHHHHHHHhc------CCCeeEEEECCHHHHHHHhhcCCCCEEEEeCC--CCCCCHHHHHHH
Confidence 3434678999998877788888999888 877444332211 122333447898888221 121122 23455
Q ss_pred HHH--hCCCCcee
Q 037843 85 VLE--LGPTMPLF 95 (203)
Q Consensus 85 i~~--~~~~~Pil 95 (203)
+++ ...+.|++
T Consensus 73 lr~~~~~~~~pii 85 (144)
T 3kht_A 73 VRKPGANQHTPIV 85 (144)
T ss_dssp HHSSSTTTTCCEE
T ss_pred HHhcccccCCCEE
Confidence 555 34678988
No 81
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=93.46 E-value=0.39 Score=33.19 Aligned_cols=76 Identities=17% Similarity=0.165 Sum_probs=47.1
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHh--ccCCCEEEECCCCCCCCCcc-hHHHHHHHh
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELK--RKKPRGVVISPGPGAPQESG-ISFRTVLEL 88 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~--~~~~dgiil~GG~~~~~~~~-~~~~~i~~~ 88 (203)
+.+|+|||....+...+.+.|+.. |..+............+. ...+|.||+--.- +...+ .+.+.+++.
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~------g~~v~~~~~~~~a~~~~~~~~~~~dlvi~d~~l--~~~~g~~~~~~l~~~ 74 (143)
T 3jte_A 3 LAKILVIDDESTILQNIKFLLEID------GNEVLTASSSTEGLRIFTENCNSIDVVITDMKM--PKLSGMDILREIKKI 74 (143)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHT------TCEEEEESSHHHHHHHHHHTTTTCCEEEEESCC--SSSCHHHHHHHHHHH
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhC------CceEEEeCCHHHHHHHHHhCCCCCCEEEEeCCC--CCCcHHHHHHHHHHh
Confidence 578999998877788888999888 887765432111122233 3468999883221 22222 245556665
Q ss_pred CCCCcee
Q 037843 89 GPTMPLF 95 (203)
Q Consensus 89 ~~~~Pil 95 (203)
....|++
T Consensus 75 ~~~~~ii 81 (143)
T 3jte_A 75 TPHMAVI 81 (143)
T ss_dssp CTTCEEE
T ss_pred CCCCeEE
Confidence 5678988
No 82
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=93.44 E-value=0.26 Score=36.76 Aligned_cols=73 Identities=18% Similarity=0.163 Sum_probs=40.1
Q ss_pred cCCCCCcEEEEeC---------CchHHHHHHHHHH---HhhhhhcCCceEE--EEeCCccc--HHHHhc----cCCCEEE
Q 037843 8 SKNDKNPIVVIDN---------YDSFTYNLCQYMG---ELELELSQGYHFE--VYRNDELT--VAELKR----KKPRGVV 67 (203)
Q Consensus 8 ~~~~~~~i~iid~---------~~~~~~~l~~~l~---~~~~~~~~g~~~~--v~~~~~~~--~~~l~~----~~~dgii 67 (203)
|.+.+++|.||-- .+++...+.++++ +. |+.+. +++ |+.. .+.+.. .++|.||
T Consensus 1 ~~~~~~rv~IistGdE~~~G~i~Dsn~~~l~~~l~~l~~~------G~~v~~~iv~-Dd~~~I~~~l~~~~~~~~~DlVi 73 (178)
T 2pbq_A 1 MSEKKAVIGVVTISDRASKGIYEDISGKAIIDYLKDVIIT------PFEVEYRVIP-DERDLIEKTLIELADEKGCSLIL 73 (178)
T ss_dssp ----CCEEEEEEECHHHHHTSSCCHHHHHHHHHHHHHBCS------CCEEEEEEEC-SCHHHHHHHHHHHHHTSCCSEEE
T ss_pred CCCCCCEEEEEEeCCcCCCCCeecchHHHHHHHHHHHHhC------CCEEEEEEcC-CCHHHHHHHHHHHHhcCCCCEEE
Confidence 4555788988843 3456667888887 66 87662 233 3211 122221 1589999
Q ss_pred ECCCCCCCCCcchHHHHHHHh
Q 037843 68 ISPGPGAPQESGISFRTVLEL 88 (203)
Q Consensus 68 l~GG~~~~~~~~~~~~~i~~~ 88 (203)
.+||.|- ...+...+.+.++
T Consensus 74 ttGG~g~-g~~D~t~ea~~~~ 93 (178)
T 2pbq_A 74 TTGGTGP-APRDVTPEATEAV 93 (178)
T ss_dssp EESCCSS-STTCCHHHHHHHH
T ss_pred ECCCCCC-CCCCchHHHHHHH
Confidence 9999763 3344444555543
No 83
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=93.37 E-value=0.55 Score=31.02 Aligned_cols=76 Identities=17% Similarity=0.178 Sum_probs=45.7
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELGP 90 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~~ 90 (203)
|.+|+|+|....+...+.+.++.. |+.+..........+.+....+|.+++-=. .+...+ .+.+.+++...
T Consensus 1 m~~ilivdd~~~~~~~l~~~l~~~------~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~--l~~~~g~~~~~~l~~~~~ 72 (116)
T 3a10_A 1 MKRILVVDDEPNIRELLKEELQEE------GYEIDTAENGEEALKKFFSGNYDLVILDIE--MPGISGLEVAGEIRKKKK 72 (116)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHT------TCEEEEESSHHHHHHHHHHSCCSEEEECSC--CSSSCHHHHHHHHHHHCT
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHC------CCEEEEeCCHHHHHHHHhcCCCCEEEEECC--CCCCCHHHHHHHHHccCC
Confidence 358999998887778888888887 887764432111122233346898888321 122222 23455665556
Q ss_pred CCcee
Q 037843 91 TMPLF 95 (203)
Q Consensus 91 ~~Pil 95 (203)
..|++
T Consensus 73 ~~~ii 77 (116)
T 3a10_A 73 DAKII 77 (116)
T ss_dssp TCCEE
T ss_pred CCeEE
Confidence 68887
No 84
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=93.28 E-value=0.27 Score=34.18 Aligned_cols=77 Identities=14% Similarity=0.179 Sum_probs=46.8
Q ss_pred CCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHH--
Q 037843 11 DKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLE-- 87 (203)
Q Consensus 11 ~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~-- 87 (203)
++.+|+|||....+...+.+.|+.. |+.+............+....+|.||+--.. +...+ .+.+.+++
T Consensus 7 ~~~~iLivd~~~~~~~~l~~~L~~~------g~~v~~~~~~~~a~~~l~~~~~dlii~d~~l--~~~~g~~~~~~l~~~~ 78 (147)
T 2zay_A 7 KWWRIMLVDTQLPALAASISALSQE------GFDIIQCGNAIEAVPVAVKTHPHLIITEANM--PKISGMDLFNSLKKNP 78 (147)
T ss_dssp -CEEEEEECTTGGGGHHHHHHHHHH------TEEEEEESSHHHHHHHHHHHCCSEEEEESCC--SSSCHHHHHHHHHTST
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHc------CCeEEEeCCHHHHHHHHHcCCCCEEEEcCCC--CCCCHHHHHHHHHcCc
Confidence 4678999999888888899999888 8877654321111222333368999983221 11122 23455555
Q ss_pred hCCCCcee
Q 037843 88 LGPTMPLF 95 (203)
Q Consensus 88 ~~~~~Pil 95 (203)
.....||+
T Consensus 79 ~~~~~pii 86 (147)
T 2zay_A 79 QTASIPVI 86 (147)
T ss_dssp TTTTSCEE
T ss_pred ccCCCCEE
Confidence 34578988
No 85
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=93.18 E-value=0.25 Score=33.15 Aligned_cols=76 Identities=13% Similarity=0.291 Sum_probs=46.3
Q ss_pred CcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCC-CCcc-hHHHHHHHh--
Q 037843 13 NPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAP-QESG-ISFRTVLEL-- 88 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~-~~~~-~~~~~i~~~-- 88 (203)
.+|+|+|........+.+.++.. |+.+............+....+|.||+--. .+ ...+ .+.+.+++.
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~------g~~v~~~~~~~~a~~~~~~~~~dlvi~d~~--~~~~~~g~~~~~~l~~~~~ 77 (127)
T 2gkg_A 6 KKILIVESDTALSATLRSALEGR------GFTVDETTDGKGSVEQIRRDRPDLVVLAVD--LSAGQNGYLICGKLKKDDD 77 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHH------TCEEEEECCHHHHHHHHHHHCCSEEEEESB--CGGGCBHHHHHHHHHHSTT
T ss_pred CeEEEEeCCHHHHHHHHHHHHhc------CceEEEecCHHHHHHHHHhcCCCEEEEeCC--CCCCCCHHHHHHHHhcCcc
Confidence 48999998887788888899888 888765432111122233336899988321 11 1112 235556654
Q ss_pred CCCCcee-e
Q 037843 89 GPTMPLF-C 96 (203)
Q Consensus 89 ~~~~Pil-C 96 (203)
....|++ .
T Consensus 78 ~~~~~ii~~ 86 (127)
T 2gkg_A 78 LKNVPIVII 86 (127)
T ss_dssp TTTSCEEEE
T ss_pred ccCCCEEEE
Confidence 4678988 5
No 86
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=93.18 E-value=0.35 Score=33.98 Aligned_cols=79 Identities=14% Similarity=0.165 Sum_probs=45.7
Q ss_pred CCCCCcEEEEeCCchHHHHHHHHHHH-hhhhhcCCceEEEEeCCcc-cHHHHhccCCCEEEECCCCCCCCCcc-hHHHHH
Q 037843 9 KNDKNPIVVIDNYDSFTYNLCQYMGE-LELELSQGYHFEVYRNDEL-TVAELKRKKPRGVVISPGPGAPQESG-ISFRTV 85 (203)
Q Consensus 9 ~~~~~~i~iid~~~~~~~~l~~~l~~-~~~~~~~g~~~~v~~~~~~-~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i 85 (203)
+..+.+|+|+|....+...+.+.|+. . |+.+...-.+.. ....+....+|.||+--.. +...+ .+.+.+
T Consensus 2 ~~~~~~ILivdd~~~~~~~l~~~L~~~~------~~~v~~~~~~~~~a~~~l~~~~~dlii~D~~l--~~~~g~~~~~~l 73 (153)
T 3cz5_A 2 SLSTARIMLVDDHPIVREGYRRLIERRP------GYAVVAEAADAGEAYRLYRETTPDIVVMDLTL--PGPGGIEATRHI 73 (153)
T ss_dssp --CCEEEEEECSCHHHHHHHHHHHTTST------TEEEEEEESSHHHHHHHHHTTCCSEEEECSCC--SSSCHHHHHHHH
T ss_pred CCcccEEEEECCcHHHHHHHHHHHhhCC------CcEEEEEeCCHHHHHHHHhcCCCCEEEEecCC--CCCCHHHHHHHH
Confidence 33457899999887777788888876 5 777652222211 1222334468999983221 11122 245556
Q ss_pred HHhCCCCcee
Q 037843 86 LELGPTMPLF 95 (203)
Q Consensus 86 ~~~~~~~Pil 95 (203)
++.....|++
T Consensus 74 ~~~~~~~~ii 83 (153)
T 3cz5_A 74 RQWDGAARIL 83 (153)
T ss_dssp HHHCTTCCEE
T ss_pred HHhCCCCeEE
Confidence 6655678888
No 87
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=92.97 E-value=0.33 Score=34.16 Aligned_cols=76 Identities=17% Similarity=0.266 Sum_probs=47.1
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELGP 90 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~~ 90 (203)
+++|+|||....+...+.+.|+.. |+.+........-.+.+....+|.||+--. .+...+ .+.+.+++...
T Consensus 14 ~~~ILivdd~~~~~~~l~~~L~~~------g~~v~~~~~~~~a~~~l~~~~~dlvi~D~~--l~~~~g~~~~~~l~~~~~ 85 (153)
T 3hv2_A 14 RPEILLVDSQEVILQRLQQLLSPL------PYTLHFARDATQALQLLASREVDLVISAAH--LPQMDGPTLLARIHQQYP 85 (153)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTS------SCEEEEESSHHHHHHHHHHSCCSEEEEESC--CSSSCHHHHHHHHHHHCT
T ss_pred CceEEEECCCHHHHHHHHHHhccc------CcEEEEECCHHHHHHHHHcCCCCEEEEeCC--CCcCcHHHHHHHHHhHCC
Confidence 578999998877778888888887 887765432111122333447899998321 111122 24455666556
Q ss_pred CCcee
Q 037843 91 TMPLF 95 (203)
Q Consensus 91 ~~Pil 95 (203)
..|++
T Consensus 86 ~~~ii 90 (153)
T 3hv2_A 86 STTRI 90 (153)
T ss_dssp TSEEE
T ss_pred CCeEE
Confidence 78988
No 88
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=92.96 E-value=0.4 Score=33.61 Aligned_cols=78 Identities=9% Similarity=0.125 Sum_probs=44.6
Q ss_pred CCCCcEEEEeCCchHHHHHHHHHHHhhhhhcCC--ceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHH
Q 037843 10 NDKNPIVVIDNYDSFTYNLCQYMGELELELSQG--YHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVL 86 (203)
Q Consensus 10 ~~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g--~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~ 86 (203)
..|.+|+|||....+...+.+.|+.. | ..+........-.+.+....+|.||+--. .+...+ .+.+.++
T Consensus 18 ~~m~~iLivdd~~~~~~~l~~~L~~~------~~~~~v~~~~~~~~al~~l~~~~~dlii~D~~--l~~~~g~~~~~~l~ 89 (150)
T 4e7p_A 18 GSHMKVLVAEDQSMLRDAMCQLLTLQ------PDVESVLQAKNGQEAIQLLEKESVDIAILDVE--MPVKTGLEVLEWIR 89 (150)
T ss_dssp --CEEEEEECSCHHHHHHHHHHHHTS------TTEEEEEEESSHHHHHHHHTTSCCSEEEECSS--CSSSCHHHHHHHHH
T ss_pred CCccEEEEEcCCHHHHHHHHHHHHhC------CCcEEEEEECCHHHHHHHhhccCCCEEEEeCC--CCCCcHHHHHHHHH
Confidence 44788999998877778888888876 5 33333321111122333447899998322 111222 2455566
Q ss_pred HhCCCCcee
Q 037843 87 ELGPTMPLF 95 (203)
Q Consensus 87 ~~~~~~Pil 95 (203)
+...+.||+
T Consensus 90 ~~~~~~~ii 98 (150)
T 4e7p_A 90 SEKLETKVV 98 (150)
T ss_dssp HTTCSCEEE
T ss_pred HhCCCCeEE
Confidence 655678888
No 89
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=92.85 E-value=0.24 Score=37.91 Aligned_cols=79 Identities=16% Similarity=0.243 Sum_probs=47.4
Q ss_pred cCCCCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHH
Q 037843 8 SKNDKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVL 86 (203)
Q Consensus 8 ~~~~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~ 86 (203)
|++|+.+|+|+|....+...+...|+.. |+.+..........+.+....+|.||+-=. .+...+ .+.+.++
T Consensus 1 M~~m~~~ILivdd~~~~~~~l~~~L~~~------g~~v~~~~~~~~al~~l~~~~~dlvilD~~--l~~~~g~~~~~~lr 72 (238)
T 2gwr_A 1 MDTMRQRILVVDDDASLAEMLTIVLRGE------GFDTAVIGDGTQALTAVRELRPDLVLLDLM--LPGMNGIDVCRVLR 72 (238)
T ss_dssp -CCCCCEEEEECSCHHHHHHHHHHHHHT------TCEEEEECCGGGHHHHHHHHCCSEEEEESS--CSSSCHHHHHHHHH
T ss_pred CCcccCeEEEEeCCHHHHHHHHHHHHHC------CCEEEEECCHHHHHHHHHhCCCCEEEEeCC--CCCCCHHHHHHHHH
Confidence 5667779999998887778888888887 888765432111223333346899988321 122222 2334444
Q ss_pred HhCCCCcee
Q 037843 87 ELGPTMPLF 95 (203)
Q Consensus 87 ~~~~~~Pil 95 (203)
+.. ..|++
T Consensus 73 ~~~-~~~ii 80 (238)
T 2gwr_A 73 ADS-GVPIV 80 (238)
T ss_dssp TTC-CCCEE
T ss_pred hCC-CCcEE
Confidence 433 68888
No 90
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=92.80 E-value=0.31 Score=33.36 Aligned_cols=77 Identities=17% Similarity=0.129 Sum_probs=45.7
Q ss_pred CCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccC-CCEEEECCCCCCCCCcc-hHHHHHHHh
Q 037843 11 DKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKK-PRGVVISPGPGAPQESG-ISFRTVLEL 88 (203)
Q Consensus 11 ~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~-~dgiil~GG~~~~~~~~-~~~~~i~~~ 88 (203)
.+.+|+|+|....+...+.+.|+.. |+.+............+.... +|.||+--. .+...+ .+.+.+++.
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~------g~~v~~~~~~~~a~~~~~~~~~~dlvi~D~~--l~~~~g~~~~~~l~~~ 77 (136)
T 3hdv_A 6 ARPLVLVVDDNAVNREALILYLKSR------GIDAVGADGAEEARLYLHYQKRIGLMITDLR--MQPESGLDLIRTIRAS 77 (136)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHT------TCCEEEESSHHHHHHHHHHCTTEEEEEECSC--CSSSCHHHHHHHHHTS
T ss_pred CCCeEEEECCCHHHHHHHHHHHHHc------CceEEEeCCHHHHHHHHHhCCCCcEEEEecc--CCCCCHHHHHHHHHhc
Confidence 3688999998887788888999888 888765432111112232234 788888321 111222 234555554
Q ss_pred -CCCCcee
Q 037843 89 -GPTMPLF 95 (203)
Q Consensus 89 -~~~~Pil 95 (203)
....|++
T Consensus 78 ~~~~~~ii 85 (136)
T 3hdv_A 78 ERAALSII 85 (136)
T ss_dssp TTTTCEEE
T ss_pred CCCCCCEE
Confidence 4668888
No 91
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=92.65 E-value=0.63 Score=34.61 Aligned_cols=89 Identities=16% Similarity=0.133 Sum_probs=49.5
Q ss_pred CCcEEEEeC---------CchHHHHHHHHHHHhhhhhcCCceEEEEe--CCcc-c-HHHHhc--cCCCEEEECCCCCCCC
Q 037843 12 KNPIVVIDN---------YDSFTYNLCQYMGELELELSQGYHFEVYR--NDEL-T-VAELKR--KKPRGVVISPGPGAPQ 76 (203)
Q Consensus 12 ~~~i~iid~---------~~~~~~~l~~~l~~~~~~~~~g~~~~v~~--~~~~-~-~~~l~~--~~~dgiil~GG~~~~~ 76 (203)
++++.||-- .+++...+.+++++. |+.+..+. .|+. . .+.+.. .++|.||.+||.|- .
T Consensus 3 ~~~v~IistGdEll~G~i~DtN~~~l~~~L~~~------G~~v~~~~iv~Dd~~~I~~~l~~a~~~~DlVittGG~g~-~ 75 (172)
T 3kbq_A 3 AKNASVITVGNEILKGRTVNTNAAFIGNFLTYH------GYQVRRGFVVMDDLDEIGWAFRVALEVSDLVVSSGGLGP-T 75 (172)
T ss_dssp -CEEEEEEECHHHHTTSSCCHHHHHHHHHHHHT------TCEEEEEEEECSCHHHHHHHHHHHHHHCSEEEEESCCSS-S
T ss_pred CCEEEEEEEcccccCCcEEeHHHHHHHHHHHHC------CCEEEEEEEeCCCHHHHHHHHHHHHhcCCEEEEcCCCcC-C
Confidence 367777733 356677889999998 88765332 2321 1 112221 15899999999764 4
Q ss_pred CcchHHHHHHH-hCCCCceeehhHHHHHHHhC
Q 037843 77 ESGISFRTVLE-LGPTMPLFCMGLKCIGEALE 107 (203)
Q Consensus 77 ~~~~~~~~i~~-~~~~~PilClG~Qlla~a~g 107 (203)
..+...+.+.+ ++..+++.=--++.|-..++
T Consensus 76 ~~D~T~ea~a~~~~~~l~~~~e~~~~i~~~~~ 107 (172)
T 3kbq_A 76 FDDMTVEGFAKCIGQDLRIDEDALAMIKKKYG 107 (172)
T ss_dssp TTCCHHHHHHHHHTCCCEECHHHHHHHHHHHC
T ss_pred cccchHHHHHHHcCCCeeeCHHHHHHHHHHHc
Confidence 44445555554 45334433222444555554
No 92
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=92.65 E-value=0.11 Score=42.05 Aligned_cols=86 Identities=10% Similarity=0.150 Sum_probs=54.6
Q ss_pred CCCcEEEEeCCc----hHHHHHHHHHHHhhhhhcCCc-eEEEEeCCcc----c---HHHHhccCCCEEEECCCCCCCC--
Q 037843 11 DKNPIVVIDNYD----SFTYNLCQYMGELELELSQGY-HFEVYRNDEL----T---VAELKRKKPRGVVISPGPGAPQ-- 76 (203)
Q Consensus 11 ~~~~i~iid~~~----~~~~~l~~~l~~~~~~~~~g~-~~~v~~~~~~----~---~~~l~~~~~dgiil~GG~~~~~-- 76 (203)
..++|++|-..+ .+...+.++|+++ |+ .+.+++.... + .+.+. +.|+|+++||-....
T Consensus 55 ~~~~I~~IptAs~~~~~~~~~~~~~f~~l------G~~~v~~L~i~~r~~a~~~~~~~~l~--~ad~I~v~GGnt~~l~~ 126 (291)
T 3en0_A 55 NDAIIGIIPSASREPLLIGERYQTIFSDM------GVKELKVLDIRDRAQGDDSGYRLFVE--QCTGIFMTGGDQLRLCG 126 (291)
T ss_dssp GGCEEEEECTTCSSHHHHHHHHHHHHHHH------CCSEEEECCCCSGGGGGCHHHHHHHH--HCSEEEECCSCHHHHHH
T ss_pred CCCeEEEEeCCCCChHHHHHHHHHHHHHc------CCCeeEEEEecCccccCCHHHHHHHh--cCCEEEECCCCHHHHHH
Confidence 357999996543 2345567788888 98 7777754211 1 12344 579999988843210
Q ss_pred --CcchHHHHHHH-hCCC-Ccee--ehhHHHHHH
Q 037843 77 --ESGISFRTVLE-LGPT-MPLF--CMGLKCIGE 104 (203)
Q Consensus 77 --~~~~~~~~i~~-~~~~-~Pil--ClG~Qlla~ 104 (203)
....+.+.|++ +.++ .|+. |-|.-+++.
T Consensus 127 ~l~~t~l~~~L~~~~~~G~~~~~GtSAGA~i~~~ 160 (291)
T 3en0_A 127 LLADTPLMDRIRQRVHNGEISLAGTSAGAAVMGH 160 (291)
T ss_dssp HHTTCHHHHHHHHHHHTTSSEEEEETHHHHTTSS
T ss_pred HHHhCCHHHHHHHHHHCCCeEEEEeCHHHHhhhH
Confidence 11234566666 4566 8999 999988865
No 93
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=92.61 E-value=0.55 Score=32.93 Aligned_cols=76 Identities=14% Similarity=0.228 Sum_probs=46.7
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELGP 90 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~~ 90 (203)
+.+|+|||....+...+.+.|+.. |+.+............+....+|.||+--.. +...+ .+.+.+++...
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~------g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l--~~~~g~~~~~~l~~~~~ 78 (154)
T 2rjn_A 7 NYTVMLVDDEQPILNSLKRLIKRL------GCNIITFTSPLDALEALKGTSVQLVISDMRM--PEMGGEVFLEQVAKSYP 78 (154)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTT------TCEEEEESCHHHHHHHHTTSCCSEEEEESSC--SSSCHHHHHHHHHHHCT
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHc------CCeEEEeCCHHHHHHHHhcCCCCEEEEecCC--CCCCHHHHHHHHHHhCC
Confidence 468999998887778888888887 8887654321111222333468999883221 11122 23455665556
Q ss_pred CCcee
Q 037843 91 TMPLF 95 (203)
Q Consensus 91 ~~Pil 95 (203)
..|++
T Consensus 79 ~~~ii 83 (154)
T 2rjn_A 79 DIERV 83 (154)
T ss_dssp TSEEE
T ss_pred CCcEE
Confidence 78988
No 94
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=92.56 E-value=0.4 Score=32.91 Aligned_cols=77 Identities=16% Similarity=0.181 Sum_probs=45.6
Q ss_pred CCCcEEEEeCCchHHHHHHHHHHH-hhhhhcCCce-EEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHH
Q 037843 11 DKNPIVVIDNYDSFTYNLCQYMGE-LELELSQGYH-FEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLE 87 (203)
Q Consensus 11 ~~~~i~iid~~~~~~~~l~~~l~~-~~~~~~~g~~-~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~ 87 (203)
.+.+|+|+|........+.+.|+. . |+. +..........+.+....+|.||+--.. +...+ .+.+.+++
T Consensus 7 ~~~~iLivdd~~~~~~~l~~~L~~~~------~~~~v~~~~~~~~a~~~l~~~~~dlii~d~~l--~~~~g~~~~~~l~~ 78 (143)
T 3cnb_A 7 NDFSILIIEDDKEFADMLTQFLENLF------PYAKIKIAYNPFDAGDLLHTVKPDVVMLDLMM--VGMDGFSICHRIKS 78 (143)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHHC------TTCEEEEECSHHHHHHHHHHTCCSEEEEETTC--TTSCHHHHHHHHHT
T ss_pred CCceEEEEECCHHHHHHHHHHHHhcc------CccEEEEECCHHHHHHHHHhcCCCEEEEeccc--CCCcHHHHHHHHHh
Confidence 357899999888778888888888 6 888 5544321111223333468999984321 11122 23455555
Q ss_pred --hCCCCcee
Q 037843 88 --LGPTMPLF 95 (203)
Q Consensus 88 --~~~~~Pil 95 (203)
.....|++
T Consensus 79 ~~~~~~~~ii 88 (143)
T 3cnb_A 79 TPATANIIVI 88 (143)
T ss_dssp STTTTTSEEE
T ss_pred CccccCCcEE
Confidence 34578888
No 95
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=92.50 E-value=0.52 Score=30.84 Aligned_cols=75 Identities=17% Similarity=0.354 Sum_probs=45.3
Q ss_pred CcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhC--
Q 037843 13 NPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELG-- 89 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~-- 89 (203)
++|+|+|........+.+.++.. |+.+............+....+|.+|+--.. +...+ .+.+.+++..
T Consensus 2 ~~iliv~~~~~~~~~l~~~l~~~------g~~v~~~~~~~~~~~~l~~~~~dlii~d~~~--~~~~~~~~~~~l~~~~~~ 73 (119)
T 2j48_A 2 GHILLLEEEDEAATVVCEMLTAA------GFKVIWLVDGSTALDQLDLLQPIVILMAWPP--PDQSCLLLLQHLREHQAD 73 (119)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHT------TCEEEEESCHHHHHHHHHHHCCSEEEEECST--TCCTHHHHHHHHHHTCCC
T ss_pred CEEEEEeCCHHHHHHHHHHHHhC------CcEEEEecCHHHHHHHHHhcCCCEEEEecCC--CCCCHHHHHHHHHhcccc
Confidence 57999998877788888899888 8887654321111222333368999884321 11122 2345555543
Q ss_pred CCCcee
Q 037843 90 PTMPLF 95 (203)
Q Consensus 90 ~~~Pil 95 (203)
...|++
T Consensus 74 ~~~~ii 79 (119)
T 2j48_A 74 PHPPLV 79 (119)
T ss_dssp SSCCCE
T ss_pred CCCCEE
Confidence 578887
No 96
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=92.44 E-value=0.18 Score=34.77 Aligned_cols=77 Identities=17% Similarity=0.307 Sum_probs=46.7
Q ss_pred CCCcEEEEeCCchHHHHHHHHHHHhhhhhcCC-ceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHh
Q 037843 11 DKNPIVVIDNYDSFTYNLCQYMGELELELSQG-YHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLEL 88 (203)
Q Consensus 11 ~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g-~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~ 88 (203)
.+.+|+|+|....+...+.+.|+.. | +.+..........+.+....+|.||+--. .+...+ .+.+.+++.
T Consensus 13 ~~~~ilivdd~~~~~~~l~~~L~~~------g~~~v~~~~~~~~a~~~l~~~~~dlvi~D~~--l~~~~g~~~~~~l~~~ 84 (135)
T 3snk_A 13 KRKQVALFSSDPNFKRDVATRLDAL------AIYDVRVSETDDFLKGPPADTRPGIVILDLG--GGDLLGKPGIVEARAL 84 (135)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHHHT------SSEEEEEECGGGGGGCCCTTCCCSEEEEEEE--TTGGGGSTTHHHHHGG
T ss_pred CCcEEEEEcCCHHHHHHHHHHHhhc------CCeEEEEeccHHHHHHHHhccCCCEEEEeCC--CCCchHHHHHHHHHhh
Confidence 3568999998887788888999888 8 87765432111111222336898887211 111112 245666665
Q ss_pred CCCCcee
Q 037843 89 GPTMPLF 95 (203)
Q Consensus 89 ~~~~Pil 95 (203)
....|++
T Consensus 85 ~~~~~ii 91 (135)
T 3snk_A 85 WATVPLI 91 (135)
T ss_dssp GTTCCEE
T ss_pred CCCCcEE
Confidence 5578988
No 97
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=92.32 E-value=0.44 Score=33.77 Aligned_cols=76 Identities=14% Similarity=0.222 Sum_probs=46.5
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEE-EEeCCcccHHHHhcc--CCCEEEECCCCCCCCCcc-hHHHHHHH
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFE-VYRNDELTVAELKRK--KPRGVVISPGPGAPQESG-ISFRTVLE 87 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~-v~~~~~~~~~~l~~~--~~dgiil~GG~~~~~~~~-~~~~~i~~ 87 (203)
+.+|+|||....+...+.+.|+.. |+.+. .......-.+.+... .+|.||+--. .+...+ .+.+.+++
T Consensus 36 ~~~Ilivdd~~~~~~~l~~~L~~~------g~~v~~~~~~~~~al~~l~~~~~~~dliilD~~--l~~~~g~~~~~~lr~ 107 (157)
T 3hzh_A 36 PFNVLIVDDSVFTVKQLTQIFTSE------GFNIIDTAADGEEAVIKYKNHYPNIDIVTLXIT--MPKMDGITCLSNIME 107 (157)
T ss_dssp ECEEEEECSCHHHHHHHHHHHHHT------TCEEEEEESSHHHHHHHHHHHGGGCCEEEECSS--CSSSCHHHHHHHHHH
T ss_pred ceEEEEEeCCHHHHHHHHHHHHhC------CCeEEEEECCHHHHHHHHHhcCCCCCEEEEecc--CCCccHHHHHHHHHh
Confidence 468999998877778888899888 88875 332111112233333 5799988322 111122 24555666
Q ss_pred hCCCCcee
Q 037843 88 LGPTMPLF 95 (203)
Q Consensus 88 ~~~~~Pil 95 (203)
.....||+
T Consensus 108 ~~~~~~ii 115 (157)
T 3hzh_A 108 FDKNARVI 115 (157)
T ss_dssp HCTTCCEE
T ss_pred hCCCCcEE
Confidence 56678988
No 98
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=92.27 E-value=0.58 Score=32.05 Aligned_cols=72 Identities=8% Similarity=0.054 Sum_probs=44.9
Q ss_pred CCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhC
Q 037843 11 DKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELG 89 (203)
Q Consensus 11 ~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~ 89 (203)
.+.+|+|||........+.+.|+.. |+.+............+....+|.|| .++ ..+ .+.+.+++.
T Consensus 17 ~~~~ilivdd~~~~~~~l~~~L~~~------g~~v~~~~~~~~al~~l~~~~~dlvi-~~~-----~~g~~~~~~l~~~- 83 (137)
T 2pln_A 17 GSMRVLLIEKNSVLGGEIEKGLNVK------GFMADVTESLEDGEYLMDIRNYDLVM-VSD-----KNALSFVSRIKEK- 83 (137)
T ss_dssp TCSEEEEECSCHHHHHHHHHHHHHT------TCEEEEESCHHHHHHHHHHSCCSEEE-ECS-----TTHHHHHHHHHHH-
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHc------CcEEEEeCCHHHHHHHHHcCCCCEEE-EcC-----ccHHHHHHHHHhc-
Confidence 3578999998877778888889887 88876443211112223334689888 221 122 234555555
Q ss_pred C-CCcee
Q 037843 90 P-TMPLF 95 (203)
Q Consensus 90 ~-~~Pil 95 (203)
. ..|++
T Consensus 84 ~~~~~ii 90 (137)
T 2pln_A 84 HSSIVVL 90 (137)
T ss_dssp STTSEEE
T ss_pred CCCccEE
Confidence 5 78988
No 99
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=92.20 E-value=0.27 Score=33.48 Aligned_cols=53 Identities=13% Similarity=0.188 Sum_probs=34.8
Q ss_pred CCCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEE
Q 037843 10 NDKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVI 68 (203)
Q Consensus 10 ~~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil 68 (203)
+.+++|+|+|........+.+.|+.. |+.+..........+.+....+|.||+
T Consensus 4 ~~~~~ilivdd~~~~~~~l~~~L~~~------g~~v~~~~~~~~a~~~l~~~~~dlii~ 56 (132)
T 3lte_A 4 KQSKRILVVDDDQAMAAAIERVLKRD------HWQVEIAHNGFDAGIKLSTFEPAIMTL 56 (132)
T ss_dssp ---CEEEEECSCHHHHHHHHHHHHHT------TCEEEEESSHHHHHHHHHHTCCSEEEE
T ss_pred CCCccEEEEECCHHHHHHHHHHHHHC------CcEEEEeCCHHHHHHHHHhcCCCEEEE
Confidence 34578999998877788888889887 888765432111122333447898888
No 100
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=92.07 E-value=0.21 Score=39.73 Aligned_cols=51 Identities=14% Similarity=0.114 Sum_probs=35.0
Q ss_pred CCCcEEEEeCC--chHHHHHHHHHHHhhhhhcCCceEEEEeCCcc--cHHHHhccCCCEEEEC
Q 037843 11 DKNPIVVIDNY--DSFTYNLCQYMGELELELSQGYHFEVYRNDEL--TVAELKRKKPRGVVIS 69 (203)
Q Consensus 11 ~~~~i~iid~~--~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~--~~~~l~~~~~dgiil~ 69 (203)
.|++||||+-. ......+.++|+.. |+.|++++..+. +.+++. +||.||++
T Consensus 3 ~m~~vLiV~g~~~~~~a~~l~~aL~~~------g~~V~~i~~~~~~~~~~~L~--~yDvIIl~ 57 (259)
T 3rht_A 3 AMTRVLYCGDTSLETAAGYLAGLMTSW------QWEFDYIPSHVGLDVGELLA--KQDLVILS 57 (259)
T ss_dssp ---CEEEEESSCTTTTHHHHHHHHHHT------TCCCEEECTTSCBCSSHHHH--TCSEEEEE
T ss_pred CCceEEEECCCCchhHHHHHHHHHHhC------CceEEEecccccccChhHHh--cCCEEEEc
Confidence 46899999632 12345677788888 999999876543 456666 68999996
No 101
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=91.98 E-value=0.68 Score=31.61 Aligned_cols=75 Identities=13% Similarity=0.130 Sum_probs=45.8
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEE-EeCCcccHHHHhccCCCEEEECCCCCCC-CCcc-hHHHHHHHh
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEV-YRNDELTVAELKRKKPRGVVISPGPGAP-QESG-ISFRTVLEL 88 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v-~~~~~~~~~~l~~~~~dgiil~GG~~~~-~~~~-~~~~~i~~~ 88 (203)
+.+|+|||....+...+.+.|+.. |+.+.. ..........+....+|.||+--. .+ ...+ .+.+.+++.
T Consensus 9 ~~~iLivdd~~~~~~~l~~~L~~~------g~~v~~~~~~~~~a~~~~~~~~~dlii~d~~--~~~~~~g~~~~~~l~~~ 80 (140)
T 3cg0_A 9 LPGVLIVEDGRLAAATLRIQLESL------GYDVLGVFDNGEEAVRCAPDLRPDIALVDIM--LCGALDGVETAARLAAG 80 (140)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHHH------TCEEEEEESSHHHHHHHHHHHCCSEEEEESS--CCSSSCHHHHHHHHHHH
T ss_pred CceEEEEECCHHHHHHHHHHHHHC------CCeeEEEECCHHHHHHHHHhCCCCEEEEecC--CCCCCCHHHHHHHHHhC
Confidence 578999998877788888999888 888763 322111122233336899998322 11 1112 234555555
Q ss_pred CCCCcee
Q 037843 89 GPTMPLF 95 (203)
Q Consensus 89 ~~~~Pil 95 (203)
...|++
T Consensus 81 -~~~~ii 86 (140)
T 3cg0_A 81 -CNLPII 86 (140)
T ss_dssp -SCCCEE
T ss_pred -CCCCEE
Confidence 678988
No 102
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=91.97 E-value=0.65 Score=32.01 Aligned_cols=80 Identities=13% Similarity=0.230 Sum_probs=46.4
Q ss_pred cCCCCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCc--eEEEEeCCcccHHHHhc----------cCCCEEEECCCCCCC
Q 037843 8 SKNDKNPIVVIDNYDSFTYNLCQYMGELELELSQGY--HFEVYRNDELTVAELKR----------KKPRGVVISPGPGAP 75 (203)
Q Consensus 8 ~~~~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~--~~~v~~~~~~~~~~l~~----------~~~dgiil~GG~~~~ 75 (203)
|..++.+|+|+|....+...+.+.|+.. |. .+..........+.+.. ..+|.||+--.- +
T Consensus 2 ~~~~~~~iLivdd~~~~~~~l~~~L~~~------g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l--~ 73 (149)
T 1k66_A 2 VGNATQPLLVVEDSDEDFSTFQRLLQRE------GVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNL--P 73 (149)
T ss_dssp BSCTTSCEEEECCCHHHHHHHHHHHHHT------TBCSCEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCC--S
T ss_pred CCCCCccEEEEECCHHHHHHHHHHHHHc------CCCceEEEECCHHHHHHHHHhcccccCcccCCCCcEEEEECCC--C
Confidence 3455788999998887788888899888 77 55444321111223332 468999983221 1
Q ss_pred CCcc-hHHHHHHHhC--CCCcee
Q 037843 76 QESG-ISFRTVLELG--PTMPLF 95 (203)
Q Consensus 76 ~~~~-~~~~~i~~~~--~~~Pil 95 (203)
...+ .+.+.+++.. ...|++
T Consensus 74 ~~~g~~~~~~l~~~~~~~~~~ii 96 (149)
T 1k66_A 74 GTDGREVLQEIKQDEVLKKIPVV 96 (149)
T ss_dssp SSCHHHHHHHHTTSTTGGGSCEE
T ss_pred CCCHHHHHHHHHhCcccCCCeEE
Confidence 1122 2234444432 467887
No 103
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=91.92 E-value=0.9 Score=30.78 Aligned_cols=75 Identities=13% Similarity=0.088 Sum_probs=46.6
Q ss_pred CcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEE-EEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCC
Q 037843 13 NPIVVIDNYDSFTYNLCQYMGELELELSQGYHFE-VYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELGP 90 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~-v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~~ 90 (203)
.+|+|+|....+...+.+.++.. |..+. .......-...+....+|.||+--.- +...+ .+.+.+++...
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~------g~~v~~~~~~~~~a~~~~~~~~~dlii~d~~l--~~~~g~~~~~~l~~~~~ 73 (134)
T 3f6c_A 2 LNAIIIDDHPLAIAAIRNLLIKN------DIEILAELTEGGSAVQRVETLKPDIVIIDVDI--PGVNGIQVLETLRKRQY 73 (134)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHT------TEEEEEEESSSTTHHHHHHHHCCSEEEEETTC--SSSCHHHHHHHHHHTTC
T ss_pred eEEEEEcCCHHHHHHHHHHHhhC------CcEEEEEcCCHHHHHHHHHhcCCCEEEEecCC--CCCChHHHHHHHHhcCC
Confidence 57999998887788888999888 87765 33222122233444478999983221 22222 24555666556
Q ss_pred CCcee
Q 037843 91 TMPLF 95 (203)
Q Consensus 91 ~~Pil 95 (203)
+.|++
T Consensus 74 ~~~ii 78 (134)
T 3f6c_A 74 SGIII 78 (134)
T ss_dssp CSEEE
T ss_pred CCeEE
Confidence 78888
No 104
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=91.85 E-value=0.75 Score=31.27 Aligned_cols=77 Identities=18% Similarity=0.270 Sum_probs=45.1
Q ss_pred CCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhC
Q 037843 11 DKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELG 89 (203)
Q Consensus 11 ~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~ 89 (203)
|+.+|+|+|....+...+...++.. |..+............+....+|.||+--. .+...+ .+.+.+++..
T Consensus 2 m~~~ilivdd~~~~~~~l~~~L~~~------g~~v~~~~~~~~a~~~~~~~~~dlvl~D~~--l~~~~g~~~~~~l~~~~ 73 (136)
T 1mvo_A 2 MNKKILVVDDEESIVTLLQYNLERS------GYDVITASDGEEALKKAETEKPDLIVLDVM--LPKLDGIEVCKQLRQQK 73 (136)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHT------TCEEEEESSHHHHHHHHHHHCCSEEEEESS--CSSSCHHHHHHHHHHTT
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHC------CcEEEEecCHHHHHHHHhhcCCCEEEEecC--CCCCCHHHHHHHHHcCC
Confidence 3468999998877777788888877 887654322111122223336898888321 122122 2345555544
Q ss_pred CCCcee
Q 037843 90 PTMPLF 95 (203)
Q Consensus 90 ~~~Pil 95 (203)
...|++
T Consensus 74 ~~~~ii 79 (136)
T 1mvo_A 74 LMFPIL 79 (136)
T ss_dssp CCCCEE
T ss_pred CCCCEE
Confidence 568887
No 105
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=91.75 E-value=0.38 Score=32.95 Aligned_cols=78 Identities=9% Similarity=0.108 Sum_probs=46.0
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCC---CCCCcc-hHHHHHHH
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPG---APQESG-ISFRTVLE 87 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~---~~~~~~-~~~~~i~~ 87 (203)
+.+|+|+|....+...+.+.|+.. |+.+..........+.+....+|.||+--... .+...+ .+.+.+++
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~------g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~ 76 (140)
T 2qr3_A 3 LGTIIIVDDNKGVLTAVQLLLKNH------FSKVITLSSPVSLSTVLREENPEVVLLDMNFTSGINNGNEGLFWLHEIKR 76 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTT------SSEEEEECCHHHHHHHHHHSCEEEEEEETTTTC-----CCHHHHHHHHHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHhC------CcEEEEeCCHHHHHHHHHcCCCCEEEEeCCcCCCCCCCccHHHHHHHHHh
Confidence 468999998877778888888887 88876543211112223334688888832211 001122 23455555
Q ss_pred hCCCCcee
Q 037843 88 LGPTMPLF 95 (203)
Q Consensus 88 ~~~~~Pil 95 (203)
.....|++
T Consensus 77 ~~~~~~ii 84 (140)
T 2qr3_A 77 QYRDLPVV 84 (140)
T ss_dssp HCTTCCEE
T ss_pred hCcCCCEE
Confidence 55678988
No 106
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=91.61 E-value=0.72 Score=34.58 Aligned_cols=77 Identities=12% Similarity=0.161 Sum_probs=46.4
Q ss_pred CCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhC
Q 037843 11 DKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELG 89 (203)
Q Consensus 11 ~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~ 89 (203)
|+.+|+|+|....+...+.+.|+.. |..+..........+.+....+|.||+--. .+...+ .+.+.+++..
T Consensus 1 M~~~ilivdd~~~~~~~l~~~L~~~------g~~v~~~~~~~~a~~~~~~~~~dlvllD~~--l~~~~g~~~~~~lr~~~ 72 (225)
T 1kgs_A 1 MNVRVLVVEDERDLADLITEALKKE------MFTVDVCYDGEEGMYMALNEPFDVVILDIM--LPVHDGWEILKSMRESG 72 (225)
T ss_dssp -CCEEEEECSSHHHHHHHHHHHHHT------TCEEEEESSHHHHHHHHHHSCCSEEEEESC--CSSSCHHHHHHHHHHTT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHC------CCEEEEECCHHHHHHHHhcCCCCEEEEeCC--CCCCCHHHHHHHHHhcC
Confidence 4578999998877778888888887 888764322111122233347899988321 122222 2345556555
Q ss_pred CCCcee
Q 037843 90 PTMPLF 95 (203)
Q Consensus 90 ~~~Pil 95 (203)
...|++
T Consensus 73 ~~~~ii 78 (225)
T 1kgs_A 73 VNTPVL 78 (225)
T ss_dssp CCCCEE
T ss_pred CCCCEE
Confidence 678988
No 107
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=91.44 E-value=0.58 Score=32.87 Aligned_cols=76 Identities=20% Similarity=0.336 Sum_probs=45.4
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELGP 90 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~~ 90 (203)
+++|+|||....+...+.+.|+.. |+.+............+....+|.||+--.. +...+ .+.+.+++...
T Consensus 3 ~~~ILivdd~~~~~~~l~~~L~~~------g~~v~~~~~~~~a~~~l~~~~~dliild~~l--~~~~g~~~~~~l~~~~~ 74 (155)
T 1qkk_A 3 APSVFLIDDDRDLRKAMQQTLELA------GFTVSSFASATEALAGLSADFAGIVISDIRM--PGMDGLALFRKILALDP 74 (155)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHT------TCEEEEESCHHHHHHTCCTTCCSEEEEESCC--SSSCHHHHHHHHHHHCT
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHc------CcEEEEECCHHHHHHHHHhCCCCEEEEeCCC--CCCCHHHHHHHHHhhCC
Confidence 478999998887788888889887 8887654221001111222368988883321 11122 23455565556
Q ss_pred CCcee
Q 037843 91 TMPLF 95 (203)
Q Consensus 91 ~~Pil 95 (203)
..|++
T Consensus 75 ~~pii 79 (155)
T 1qkk_A 75 DLPMI 79 (155)
T ss_dssp TSCEE
T ss_pred CCCEE
Confidence 78988
No 108
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=91.38 E-value=0.76 Score=30.73 Aligned_cols=76 Identities=13% Similarity=0.246 Sum_probs=44.8
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELGP 90 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~~ 90 (203)
..+|+|+|....+...+.+.++.. |..+............+....+|.+|+-=. .+...+ .+.+.+++...
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~------~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~--l~~~~g~~~~~~l~~~~~ 74 (124)
T 1srr_A 3 NEKILIVDDQSGIRILLNEVFNKE------GYQTFQAANGLQALDIVTKERPDLVLLDMK--IPGMDGIEILKRMKVIDE 74 (124)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTT------TCEEEEESSHHHHHHHHHHHCCSEEEEESC--CTTCCHHHHHHHHHHHCT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHC------CcEEEEeCCHHHHHHHHhccCCCEEEEecC--CCCCCHHHHHHHHHHhCC
Confidence 358999998877777888888877 887654322111122233336898887221 122122 23455555556
Q ss_pred CCcee
Q 037843 91 TMPLF 95 (203)
Q Consensus 91 ~~Pil 95 (203)
..|++
T Consensus 75 ~~~ii 79 (124)
T 1srr_A 75 NIRVI 79 (124)
T ss_dssp TCEEE
T ss_pred CCCEE
Confidence 78988
No 109
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=91.16 E-value=0.88 Score=34.19 Aligned_cols=70 Identities=17% Similarity=0.151 Sum_probs=43.5
Q ss_pred CCcEEEEeC--------CchHHHHHHHHHHHhhhhhcCCceEEE---EeCCccc-HHHHhc---cCCCEEEECCCCCCCC
Q 037843 12 KNPIVVIDN--------YDSFTYNLCQYMGELELELSQGYHFEV---YRNDELT-VAELKR---KKPRGVVISPGPGAPQ 76 (203)
Q Consensus 12 ~~~i~iid~--------~~~~~~~l~~~l~~~~~~~~~g~~~~v---~~~~~~~-~~~l~~---~~~dgiil~GG~~~~~ 76 (203)
++||.||-- .+++...+..++++. |+.+.. ++.+... .+.+.. .++|.||.+||.+ +.
T Consensus 30 ~~rvaIistGdEl~~G~~Dsn~~~L~~~L~~~------G~~v~~~~iv~Dd~~~I~~al~~a~~~~~DlVIttGGts-~g 102 (185)
T 3rfq_A 30 VGRALVVVVDDRTAHGDEDHSGPLVTELLTEA------GFVVDGVVAVEADEVDIRNALNTAVIGGVDLVVSVGGTG-VT 102 (185)
T ss_dssp CEEEEEEEECHHHHTTCCCSHHHHHHHHHHHT------TEEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEESCCS-SS
T ss_pred CCEEEEEEECcccCCCCcCcHHHHHHHHHHHC------CCEEEEEEEeCCCHHHHHHHHHHHHhCCCCEEEECCCCC-CC
Confidence 578888832 567788899999998 887653 3322111 112221 3689999999976 34
Q ss_pred CcchHHHHHHHh
Q 037843 77 ESGISFRTVLEL 88 (203)
Q Consensus 77 ~~~~~~~~i~~~ 88 (203)
..+...+.+.++
T Consensus 103 ~~D~t~eal~~l 114 (185)
T 3rfq_A 103 PRDVTPESTREI 114 (185)
T ss_dssp TTCCHHHHHHTT
T ss_pred CcccHHHHHHHH
Confidence 444445555553
No 110
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=91.11 E-value=1.2 Score=30.29 Aligned_cols=76 Identities=16% Similarity=0.182 Sum_probs=45.7
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELGP 90 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~~ 90 (203)
+.+|+|+|....+...+.+.++.. |..+..........+.+....+|.||+--. .+...+ .+.+.+++...
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~------g~~v~~~~~~~~al~~~~~~~~dlvl~D~~--l~~~~g~~~~~~l~~~~~ 74 (132)
T 3crn_A 3 LKRILIVDDDTAILDSTKQILEFE------GYEVEIAATAGEGLAKIENEFFNLALFXIK--LPDMEGTELLEKAHKLRP 74 (132)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHT------TCEEEEESSHHHHHHHHHHSCCSEEEECSB--CSSSBHHHHHHHHHHHCT
T ss_pred ccEEEEEeCCHHHHHHHHHHHHHC------CceEEEeCCHHHHHHHHhcCCCCEEEEecC--CCCCchHHHHHHHHhhCC
Confidence 468999998877778888888877 887764322111122233346898888221 122222 23455555556
Q ss_pred CCcee
Q 037843 91 TMPLF 95 (203)
Q Consensus 91 ~~Pil 95 (203)
..|++
T Consensus 75 ~~~ii 79 (132)
T 3crn_A 75 GMKKI 79 (132)
T ss_dssp TSEEE
T ss_pred CCcEE
Confidence 78988
No 111
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=90.79 E-value=2.8 Score=29.09 Aligned_cols=33 Identities=9% Similarity=0.226 Sum_probs=22.5
Q ss_pred CCcEEEEe---CCchHHHHHHHHHHHhhhhhcCCceEEEEeC
Q 037843 12 KNPIVVID---NYDSFTYNLCQYMGELELELSQGYHFEVYRN 50 (203)
Q Consensus 12 ~~~i~iid---~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~ 50 (203)
.+.|+||- .-+.+.+.+.++|.+. |.++..+.+
T Consensus 4 p~siAVVGaS~~~~~~g~~v~~~L~~~------g~~V~pVnP 39 (122)
T 3ff4_A 4 MKKTLILGATPETNRYAYLAAERLKSH------GHEFIPVGR 39 (122)
T ss_dssp CCCEEEETCCSCTTSHHHHHHHHHHHH------TCCEEEESS
T ss_pred CCEEEEEccCCCCCCHHHHHHHHHHHC------CCeEEEECC
Confidence 46799993 3345677788888887 776655543
No 112
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=90.71 E-value=0.6 Score=31.30 Aligned_cols=75 Identities=19% Similarity=0.284 Sum_probs=43.9
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELGP 90 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~~ 90 (203)
..+|+|+|........+.+.++.. |+.+........-.+.+....+|.||+-=. .|...+ .+.+.+++. .
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~------g~~v~~~~~~~~al~~~~~~~~dlii~D~~--~p~~~g~~~~~~lr~~-~ 72 (120)
T 3f6p_A 2 DKKILVVDDEKPIADILEFNLRKE------GYEVHCAHDGNEAVEMVEELQPDLILLDIM--LPNKDGVEVCREVRKK-Y 72 (120)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHT------TCEEEEESSHHHHHHHHHTTCCSEEEEETT--STTTHHHHHHHHHHTT-C
T ss_pred CCeEEEEECCHHHHHHHHHHHHhC------CEEEEEeCCHHHHHHHHhhCCCCEEEEeCC--CCCCCHHHHHHHHHhc-C
Confidence 468999998877777888888887 888765422111122333447899888211 122222 233444442 3
Q ss_pred CCcee
Q 037843 91 TMPLF 95 (203)
Q Consensus 91 ~~Pil 95 (203)
..|++
T Consensus 73 ~~~ii 77 (120)
T 3f6p_A 73 DMPII 77 (120)
T ss_dssp CSCEE
T ss_pred CCCEE
Confidence 68887
No 113
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=90.68 E-value=0.53 Score=31.72 Aligned_cols=76 Identities=14% Similarity=0.268 Sum_probs=45.0
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHh--
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLEL-- 88 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~-- 88 (203)
+.+|+|+|....+...+.+.++.. |+.+........-.+.+....+|.||+-= ..|...+ .+.+.+++.
T Consensus 2 ~~~ILivdd~~~~~~~l~~~l~~~------g~~v~~~~~~~~al~~l~~~~~dlvllD~--~~p~~~g~~~~~~l~~~~~ 73 (122)
T 3gl9_A 2 SKKVLLVDDSAVLRKIVSFNLKKE------GYEVIEAENGQIALEKLSEFTPDLIVLXI--MMPVMDGFTVLKKLQEKEE 73 (122)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHT------TCEEEEESSHHHHHHHHTTBCCSEEEECS--CCSSSCHHHHHHHHHTSTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHC------CcEEEEeCCHHHHHHHHHhcCCCEEEEec--cCCCCcHHHHHHHHHhccc
Confidence 468999998777777888888887 88876442211112233344789888821 1222222 234445443
Q ss_pred CCCCcee
Q 037843 89 GPTMPLF 95 (203)
Q Consensus 89 ~~~~Pil 95 (203)
..+.|++
T Consensus 74 ~~~~pii 80 (122)
T 3gl9_A 74 WKRIPVI 80 (122)
T ss_dssp TTTSCEE
T ss_pred ccCCCEE
Confidence 2568988
No 114
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=90.66 E-value=0.28 Score=36.15 Aligned_cols=71 Identities=13% Similarity=0.130 Sum_probs=38.9
Q ss_pred CCCCCcEEEEe---------CCchHHHHHHHH----HHHhhhhhcCCceEE---EEeCCccc--HHHHhc--c-CCCEEE
Q 037843 9 KNDKNPIVVID---------NYDSFTYNLCQY----MGELELELSQGYHFE---VYRNDELT--VAELKR--K-KPRGVV 67 (203)
Q Consensus 9 ~~~~~~i~iid---------~~~~~~~~l~~~----l~~~~~~~~~g~~~~---v~~~~~~~--~~~l~~--~-~~dgii 67 (203)
+.|++++.||- -.+++...+.+. +++. |+.+. +++ |+.. .+.+.. . ++|.||
T Consensus 2 ~~m~~~v~Ii~~GdEl~~G~i~D~n~~~l~~~~~~~l~~~------G~~v~~~~iv~-Dd~~~I~~~l~~a~~~~~DlVi 74 (167)
T 2g2c_A 2 NAMHIKSAIIVVSDRISTGTRENKALPLLQRLMSDELQDY------SYELISEVVVP-EGYDTVVEAIATALKQGARFII 74 (167)
T ss_dssp --CEEEEEEEEECHHHHHTSSCCCHHHHHHHHHCC----C------EEEEEEEEEEC-SSHHHHHHHHHHHHHTTCSEEE
T ss_pred CCCccEEEEEEECCcccCCceeccHHHHHHHhHHhHHHHC------CCEEeEEEEeC-CCHHHHHHHHHHHHhCCCCEEE
Confidence 34567888883 345667788888 8888 87664 333 3211 122222 1 489999
Q ss_pred ECCCCCCCCCcchHHHHHHH
Q 037843 68 ISPGPGAPQESGISFRTVLE 87 (203)
Q Consensus 68 l~GG~~~~~~~~~~~~~i~~ 87 (203)
.+||.| +...+...+.+.+
T Consensus 75 ttGG~g-~~~~D~t~ea~~~ 93 (167)
T 2g2c_A 75 TAGGTG-IRAKNQTPEATAS 93 (167)
T ss_dssp EESCCS-SSTTCCHHHHHHT
T ss_pred ECCCCC-CCCCcChHHHHHH
Confidence 999976 3344444455554
No 115
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=90.38 E-value=0.42 Score=35.17 Aligned_cols=69 Identities=14% Similarity=0.203 Sum_probs=42.6
Q ss_pred CCcEEEEeC---------CchHHHHHHHHHHHhhhhhcCCceEE---EEeCCcccH-HHHhc---cCCCEEEECCCCCCC
Q 037843 12 KNPIVVIDN---------YDSFTYNLCQYMGELELELSQGYHFE---VYRNDELTV-AELKR---KKPRGVVISPGPGAP 75 (203)
Q Consensus 12 ~~~i~iid~---------~~~~~~~l~~~l~~~~~~~~~g~~~~---v~~~~~~~~-~~l~~---~~~dgiil~GG~~~~ 75 (203)
+++|.||-- .+++...+..++++. |+.+. +++.+ ... +.+.. .++|.||.+||.+ +
T Consensus 7 ~~rv~ii~tGdEl~~G~i~Dsn~~~l~~~l~~~------G~~v~~~~iv~Dd-~~i~~al~~a~~~~~DlVittGG~s-~ 78 (164)
T 3pzy_A 7 TRSARVIIASTRASSGEYEDRCGPIITEWLAQQ------GFSSAQPEVVADG-SPVGEALRKAIDDDVDVILTSGGTG-I 78 (164)
T ss_dssp CCEEEEEEECHHHHC----CCHHHHHHHHHHHT------TCEECCCEEECSS-HHHHHHHHHHHHTTCSEEEEESCCS-S
T ss_pred CCEEEEEEECCCCCCCceeeHHHHHHHHHHHHC------CCEEEEEEEeCCH-HHHHHHHHHHHhCCCCEEEECCCCC-C
Confidence 477888833 356677889999998 88764 34332 221 22221 2689999999975 3
Q ss_pred CCcchHHHHHHHh
Q 037843 76 QESGISFRTVLEL 88 (203)
Q Consensus 76 ~~~~~~~~~i~~~ 88 (203)
...+...+.+.++
T Consensus 79 g~~D~t~eal~~~ 91 (164)
T 3pzy_A 79 APTDSTPDQTVAV 91 (164)
T ss_dssp STTCCHHHHHHTT
T ss_pred CCCccHHHHHHHH
Confidence 4445555556553
No 116
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=90.33 E-value=1.4 Score=32.62 Aligned_cols=80 Identities=14% Similarity=0.040 Sum_probs=46.6
Q ss_pred CCcEEEEe-CCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCc-chHHHHHHHh-
Q 037843 12 KNPIVVID-NYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQES-GISFRTVLEL- 88 (203)
Q Consensus 12 ~~~i~iid-~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~-~~~~~~i~~~- 88 (203)
|++|+||- ...+++..+++.+.+...+ ..|++++++...+.+.+++. ++|+||| |.|--.... ..+..++.++
T Consensus 4 M~kiliiy~S~~GnT~~~a~~i~~~l~~-~~g~~v~~~~l~~~~~~~l~--~aD~ii~-gsP~y~g~~~~~lk~fld~~~ 79 (188)
T 2ark_A 4 MGKVLVIYDTRTGNTKKMAELVAEGARS-LEGTEVRLKHVDEATKEDVL--WADGLAV-GSPTNMGLVSWKMKRFFDDVL 79 (188)
T ss_dssp CEEEEEEECCSSSHHHHHHHHHHHHHHT-STTEEEEEEETTTCCHHHHH--HCSEEEE-EEECBTTBCCHHHHHHHHHTG
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHHHhh-cCCCeEEEEEhhhCCHHHHH--hCCEEEE-EeCccCCcCCHHHHHHHHHHh
Confidence 46787773 3345677777766543211 02788888876555667776 4699999 554332222 2344555543
Q ss_pred ------CCCCcee
Q 037843 89 ------GPTMPLF 95 (203)
Q Consensus 89 ------~~~~Pil 95 (203)
-.++|+.
T Consensus 80 ~~~~~~l~gk~~~ 92 (188)
T 2ark_A 80 GDLWGEIDGKIAC 92 (188)
T ss_dssp GGTTTSCTTCEEE
T ss_pred hhhHHHhCCCeEE
Confidence 1467776
No 117
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=90.00 E-value=0.86 Score=31.33 Aligned_cols=75 Identities=13% Similarity=0.211 Sum_probs=43.9
Q ss_pred CcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCCC
Q 037843 13 NPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELGPT 91 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~~~ 91 (203)
.+|+|+|....+...+.+.++.. |..+..........+.+....+|.||+-=. .+...+ .+.+.+++....
T Consensus 5 ~~ILivdd~~~~~~~l~~~L~~~------g~~v~~~~~~~~a~~~l~~~~~dlvllD~~--l~~~~g~~l~~~l~~~~~~ 76 (137)
T 3cfy_A 5 PRVLLVEDSTSLAILYKQYVKDE------PYDIFHVETGRDAIQFIERSKPQLIILDLK--LPDMSGEDVLDWINQNDIP 76 (137)
T ss_dssp CEEEEECSCTTHHHHHHHHTTTS------SSEEEEESSHHHHHHHHHHHCCSEEEECSB--CSSSBHHHHHHHHHHTTCC
T ss_pred ceEEEEeCCHHHHHHHHHHHHhc------CceEEEeCCHHHHHHHHHhcCCCEEEEecC--CCCCCHHHHHHHHHhcCCC
Confidence 48999998877777788888776 887654322111122233336898888221 122222 234556655566
Q ss_pred Ccee
Q 037843 92 MPLF 95 (203)
Q Consensus 92 ~Pil 95 (203)
.|++
T Consensus 77 ~~ii 80 (137)
T 3cfy_A 77 TSVI 80 (137)
T ss_dssp CEEE
T ss_pred CCEE
Confidence 8887
No 118
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=89.98 E-value=1.3 Score=29.81 Aligned_cols=75 Identities=8% Similarity=0.083 Sum_probs=43.6
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHh--
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLEL-- 88 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~-- 88 (203)
+++|+|+|........+...++ . |..+..........+.+....+|.||+--. .+...+ .+.+.+++.
T Consensus 4 ~~~ilivdd~~~~~~~l~~~l~-~------~~~v~~~~~~~~a~~~l~~~~~dlvi~d~~--l~~~~g~~~~~~l~~~~~ 74 (133)
T 3nhm_A 4 KPKVLIVENSWTMRETLRLLLS-G------EFDCTTAADGASGLQQALAHPPDVLISDVN--MDGMDGYALCGHFRSEPT 74 (133)
T ss_dssp -CEEEEECSCHHHHHHHHHHHT-T------TSEEEEESSHHHHHHHHHHSCCSEEEECSS--CSSSCHHHHHHHHHHSTT
T ss_pred CCEEEEEcCCHHHHHHHHHHHh-C------CcEEEEECCHHHHHHHHhcCCCCEEEEeCC--CCCCCHHHHHHHHHhCCc
Confidence 4789999987777777777776 5 888765432111123333447899998322 122222 234555553
Q ss_pred CCCCcee
Q 037843 89 GPTMPLF 95 (203)
Q Consensus 89 ~~~~Pil 95 (203)
..+.|++
T Consensus 75 ~~~~pii 81 (133)
T 3nhm_A 75 LKHIPVI 81 (133)
T ss_dssp TTTCCEE
T ss_pred cCCCCEE
Confidence 3478888
No 119
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=89.96 E-value=1 Score=29.78 Aligned_cols=76 Identities=16% Similarity=0.319 Sum_probs=44.1
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcc-cHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDEL-TVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELG 89 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~-~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~ 89 (203)
+.+|+|+|....+...+.+.++.. |..+...-.+.. ....+....+|.|++-=. .+...+ .+.+.+++..
T Consensus 2 ~~~ilivdd~~~~~~~l~~~l~~~------g~~vv~~~~~~~~a~~~~~~~~~dlil~D~~--l~~~~g~~~~~~l~~~~ 73 (120)
T 1tmy_A 2 GKRVLIVDDAAFMRMMLKDIITKA------GYEVAGEATNGREAVEKYKELKPDIVTMDIT--MPEMNGIDAIKEIMKID 73 (120)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHT------TCEEEEEESSHHHHHHHHHHHCCSEEEEECS--CGGGCHHHHHHHHHHHC
T ss_pred CceEEEEcCcHHHHHHHHHHHhhc------CcEEEEEECCHHHHHHHHHhcCCCEEEEeCC--CCCCcHHHHHHHHHhhC
Confidence 468999998877777888888877 887532222211 122233336898887321 121122 2345555555
Q ss_pred CCCcee
Q 037843 90 PTMPLF 95 (203)
Q Consensus 90 ~~~Pil 95 (203)
...|++
T Consensus 74 ~~~~ii 79 (120)
T 1tmy_A 74 PNAKII 79 (120)
T ss_dssp TTCCEE
T ss_pred CCCeEE
Confidence 678887
No 120
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=89.85 E-value=0.45 Score=34.89 Aligned_cols=68 Identities=10% Similarity=0.076 Sum_probs=40.6
Q ss_pred CCcEEEEeC---------CchHHHHHHHHHHHhhhhhcCCceEEE---EeCCccc--HHHHhc---c-CCCEEEECCCCC
Q 037843 12 KNPIVVIDN---------YDSFTYNLCQYMGELELELSQGYHFEV---YRNDELT--VAELKR---K-KPRGVVISPGPG 73 (203)
Q Consensus 12 ~~~i~iid~---------~~~~~~~l~~~l~~~~~~~~~g~~~~v---~~~~~~~--~~~l~~---~-~~dgiil~GG~~ 73 (203)
|++|.||-- .+++...+.+++++. |+.+.. ++ |+.. .+.+.. . ++|.||.+||.|
T Consensus 1 ~~~v~Ii~tGdEl~~G~i~D~n~~~l~~~l~~~------G~~v~~~~iv~-Dd~~~i~~~l~~~~~~~~~DlVittGG~g 73 (164)
T 2is8_A 1 MFRVGILTVSDKGFRGERQDTTHLAIREVLAGG------PFEVAAYELVP-DEPPMIKKVLRLWADREGLDLILTNGGTG 73 (164)
T ss_dssp CEEEEEEEECHHHHHTSSCCCHHHHHHHHHTTS------SEEEEEEEEEC-SCHHHHHHHHHHHHHTSCCSEEEEESCCS
T ss_pred CcEEEEEEEcCcccCCCcccchHHHHHHHHHHC------CCeEeEEEEcC-CCHHHHHHHHHHHHhcCCCCEEEEcCCCC
Confidence 467777743 356677888888888 887643 33 3211 122221 1 589999999976
Q ss_pred CCCCcchHHHHHHH
Q 037843 74 APQESGISFRTVLE 87 (203)
Q Consensus 74 ~~~~~~~~~~~i~~ 87 (203)
- ...+...+.+.+
T Consensus 74 ~-g~~D~t~ea~~~ 86 (164)
T 2is8_A 74 L-APRDRTPEATRE 86 (164)
T ss_dssp S-STTCCHHHHHHT
T ss_pred C-CCCCChHHHHHH
Confidence 3 344444555555
No 121
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=89.81 E-value=0.23 Score=34.70 Aligned_cols=81 Identities=11% Similarity=0.148 Sum_probs=49.3
Q ss_pred cCCCCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCc-ccHHHHhccCCCEEEECCCCCCCCCcch-HHHHH
Q 037843 8 SKNDKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDE-LTVAELKRKKPRGVVISPGPGAPQESGI-SFRTV 85 (203)
Q Consensus 8 ~~~~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~-~~~~~l~~~~~dgiil~GG~~~~~~~~~-~~~~i 85 (203)
|+..+.||+|+|-.......+.+.|+.. |+.+.-.-.+. .-.+.+....||.|++= -..|.-.+. +.+.+
T Consensus 4 m~~r~~rILiVdD~~~~~~~l~~~L~~~------G~~v~~~a~~g~eAl~~~~~~~~DlvllD--i~mP~~~G~el~~~l 75 (123)
T 2lpm_A 4 MTERRLRVLVVEDESMIAMLIEDTLCEL------GHEVAATASRMQEALDIARKGQFDIAIID--VNLDGEPSYPVADIL 75 (123)
T ss_dssp CCCCCCCEEEESSSTTTSHHHHHHHHHH------CCCCCBCSCCHHHHHHHHHHCCSSEEEEC--SSSSSCCSHHHHHHH
T ss_pred CCCCCCEEEEEeCCHHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHhCCCCEEEEe--cCCCCCCHHHHHHHH
Confidence 5566789999998777888899999998 98753211111 11222334479999881 112332332 34455
Q ss_pred HHhCCCCcee-ehh
Q 037843 86 LELGPTMPLF-CMG 98 (203)
Q Consensus 86 ~~~~~~~Pil-ClG 98 (203)
++ .++||+ +=|
T Consensus 76 r~--~~ipvI~lTa 87 (123)
T 2lpm_A 76 AE--RNVPFIFATG 87 (123)
T ss_dssp HH--TCCSSCCBCT
T ss_pred Hc--CCCCEEEEec
Confidence 54 469988 544
No 122
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=89.62 E-value=1 Score=30.75 Aligned_cols=76 Identities=11% Similarity=0.024 Sum_probs=44.0
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhc-cCCCEEEECCCCCCCCCcc-hHHHHHHHhC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKR-KKPRGVVISPGPGAPQESG-ISFRTVLELG 89 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~-~~~dgiil~GG~~~~~~~~-~~~~~i~~~~ 89 (203)
+.+|+|+|....+...+.+.|+.. |+.+............+.. ..+|.||+--. .+...+ .+.+.+++..
T Consensus 15 ~~~ilivdd~~~~~~~l~~~L~~~------g~~v~~~~~~~~al~~l~~~~~~dlvilD~~--l~~~~g~~~~~~l~~~~ 86 (138)
T 2b4a_A 15 PFRVTLVEDEPSHATLIQYHLNQL------GAEVTVHPSGSAFFQHRSQLSTCDLLIVSDQ--LVDLSIFSLLDIVKEQT 86 (138)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHT------TCEEEEESSHHHHHHTGGGGGSCSEEEEETT--CTTSCHHHHHHHHTTSS
T ss_pred CCeEEEECCCHHHHHHHHHHHHHc------CCEEEEeCCHHHHHHHHHhCCCCCEEEEeCC--CCCCCHHHHHHHHHhhC
Confidence 578999998887788888889887 8876544321111222333 46899888321 111112 1233344333
Q ss_pred CCCcee
Q 037843 90 PTMPLF 95 (203)
Q Consensus 90 ~~~Pil 95 (203)
...|++
T Consensus 87 ~~~~ii 92 (138)
T 2b4a_A 87 KQPSVL 92 (138)
T ss_dssp SCCEEE
T ss_pred CCCCEE
Confidence 467777
No 123
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=89.56 E-value=1 Score=30.82 Aligned_cols=76 Identities=11% Similarity=0.224 Sum_probs=44.4
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCc--eEEEEeCCcccHHHHhc------cCCCEEEECCCCCCCCCcc-hHH
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGY--HFEVYRNDELTVAELKR------KKPRGVVISPGPGAPQESG-ISF 82 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~--~~~v~~~~~~~~~~l~~------~~~dgiil~GG~~~~~~~~-~~~ 82 (203)
+.+|+|+|....+...+.+.|+.. |. .+............+.. ..+|.||+--. .+...+ .+.
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~------g~~~~v~~~~~~~~a~~~l~~~~~~~~~~~dlii~D~~--l~~~~g~~~~ 78 (143)
T 2qvg_A 7 KVDILYLEDDEVDIQSVERVFHKI------SSLIKIEIAKSGNQALDMLYGRNKENKIHPKLILLDIN--IPKMNGIEFL 78 (143)
T ss_dssp CCSEEEECCCHHHHHHHHHHHHHH------CTTCCEEEESSHHHHHHHHHTCTTCCCCCCSEEEEETT--CTTSCHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHh------CCCceEEEECCHHHHHHHHHhcccccCCCCCEEEEecC--CCCCCHHHHH
Confidence 468999999887888888999888 77 55554321111223332 46899988322 111122 233
Q ss_pred HHHHHhC--CCCcee
Q 037843 83 RTVLELG--PTMPLF 95 (203)
Q Consensus 83 ~~i~~~~--~~~Pil 95 (203)
+.+++.. ...|++
T Consensus 79 ~~l~~~~~~~~~~ii 93 (143)
T 2qvg_A 79 KELRDDSSFTDIEVF 93 (143)
T ss_dssp HHHTTSGGGTTCEEE
T ss_pred HHHHcCccccCCcEE
Confidence 4444432 568888
No 124
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=89.54 E-value=3.7 Score=28.11 Aligned_cols=77 Identities=10% Similarity=0.017 Sum_probs=44.0
Q ss_pred cEEEE-eCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCC-CCCcch--HHHHHHHh-
Q 037843 14 PIVVI-DNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGA-PQESGI--SFRTVLEL- 88 (203)
Q Consensus 14 ~i~ii-d~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~-~~~~~~--~~~~i~~~- 88 (203)
+|+|+ ....+++..+++.+.+...+ .|+++++++..+.+.+++. ++|+||| |.|-- -...+. +..++.++
T Consensus 1 ~i~iiy~S~tGnT~~~a~~i~~~l~~--~g~~v~~~~~~~~~~~~l~--~~d~vi~-g~p~y~~~~~~~~~~~~fl~~l~ 75 (137)
T 2fz5_A 1 MVEIVYWSGTGNTEAMANEIEAAVKA--AGADVESVRFEDTNVDDVA--SKDVILL-GCPAMGSEELEDSVVEPFFTDLA 75 (137)
T ss_dssp CEEEEECCSSSHHHHHHHHHHHHHHH--TTCCEEEEETTSCCHHHHH--TCSEEEE-ECCCBTTTBCCHHHHHHHHHHHG
T ss_pred CEEEEEECCCChHHHHHHHHHHHHHh--CCCeEEEEEcccCCHHHHh--cCCEEEE-EccccCCCCCCHHHHHHHHHHhh
Confidence 35555 34446677777666543211 2788888876555566776 5799999 44422 122334 55555553
Q ss_pred --CCCCcee
Q 037843 89 --GPTMPLF 95 (203)
Q Consensus 89 --~~~~Pil 95 (203)
-.++|+.
T Consensus 76 ~~l~~k~~~ 84 (137)
T 2fz5_A 76 PKLKGKKVG 84 (137)
T ss_dssp GGCSSCEEE
T ss_pred hhcCCCEEE
Confidence 2567766
No 125
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=89.33 E-value=2.5 Score=27.78 Aligned_cols=74 Identities=15% Similarity=0.249 Sum_probs=43.7
Q ss_pred cEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCCCC
Q 037843 14 PIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELGPTM 92 (203)
Q Consensus 14 ~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~~~~ 92 (203)
+|+|+|........+.+.++.. |..+............+....+|.+|+--. .+...+ .+.+.+++.....
T Consensus 2 ~ilivdd~~~~~~~l~~~l~~~------g~~v~~~~~~~~a~~~~~~~~~dlil~D~~--l~~~~g~~~~~~l~~~~~~~ 73 (121)
T 2pl1_A 2 RVLVVEDNALLRHHLKVQIQDA------GHQVDDAEDAKEADYYLNEHIPDIAIVDLG--LPDEDGLSLIRRWRSNDVSL 73 (121)
T ss_dssp EEEEECSCHHHHHHHHHHHHHT------TCEEEEESSHHHHHHHHHHSCCSEEEECSC--CSSSCHHHHHHHHHHTTCCS
T ss_pred eEEEEeCcHHHHHHHHHHHhhc------CCEEEEeCCHHHHHHHHhccCCCEEEEecC--CCCCCHHHHHHHHHhcCCCC
Confidence 6899998777777788888877 887665432111122233346899888221 122222 2345555545568
Q ss_pred cee
Q 037843 93 PLF 95 (203)
Q Consensus 93 Pil 95 (203)
|++
T Consensus 74 ~ii 76 (121)
T 2pl1_A 74 PIL 76 (121)
T ss_dssp CEE
T ss_pred CEE
Confidence 887
No 126
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=89.31 E-value=1.7 Score=29.39 Aligned_cols=76 Identities=11% Similarity=0.204 Sum_probs=45.1
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCc--eEEEEeCCcccHHHHhc-------cCCCEEEECCCCCCCCCcc-hH
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGY--HFEVYRNDELTVAELKR-------KKPRGVVISPGPGAPQESG-IS 81 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~--~~~v~~~~~~~~~~l~~-------~~~dgiil~GG~~~~~~~~-~~ 81 (203)
+++|+|+|....+...+.+.|+.. |. .+........-...+.. ..+|.||+--.. +...+ .+
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~------~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~--~~~~g~~~ 73 (140)
T 1k68_A 2 HKKIFLVEDNKADIRLIQEALANS------TVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNL--PKKDGREV 73 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHTC------SSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSC--SSSCHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhc------CCCceEEEECCHHHHHHHHHcccccccCCCCcEEEEecCC--CcccHHHH
Confidence 468999998887788888999888 77 55443221111222332 468999983321 22122 23
Q ss_pred HHHHHHhC--CCCcee
Q 037843 82 FRTVLELG--PTMPLF 95 (203)
Q Consensus 82 ~~~i~~~~--~~~Pil 95 (203)
.+.+++.. ...|++
T Consensus 74 ~~~l~~~~~~~~~pii 89 (140)
T 1k68_A 74 LAEIKSDPTLKRIPVV 89 (140)
T ss_dssp HHHHHHSTTGGGSCEE
T ss_pred HHHHHcCcccccccEE
Confidence 45555543 568888
No 127
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=89.30 E-value=1.1 Score=32.91 Aligned_cols=69 Identities=14% Similarity=0.204 Sum_probs=41.6
Q ss_pred CCcEEEEe-------CCchHHHHHHHHHHHhhhhhcCCceEEEEe--CCccc--HHHHhc--c--CCCEEEECCCCCCCC
Q 037843 12 KNPIVVID-------NYDSFTYNLCQYMGELELELSQGYHFEVYR--NDELT--VAELKR--K--KPRGVVISPGPGAPQ 76 (203)
Q Consensus 12 ~~~i~iid-------~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~--~~~~~--~~~l~~--~--~~dgiil~GG~~~~~ 76 (203)
+++|.||- -.+++...+.+.|++. |+.+..+. .|+.. .+.+.. . ++|.||.+||.|- .
T Consensus 13 ~~rv~Ii~tGdElg~i~Dsn~~~l~~~L~~~------G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~g~-g 85 (169)
T 1y5e_A 13 EVRCKIVTISDTRTEETDKSGQLLHELLKEA------GHKVTSYEIVKDDKESIQQAVLAGYHKEDVDVVLTNGGTGI-T 85 (169)
T ss_dssp CCEEEEEEECSSCCTTTCHHHHHHHHHHHHH------TCEEEEEEEECSSHHHHHHHHHHHHTCTTCSEEEEECCCSS-S
T ss_pred CCEEEEEEEcCccCeeccChHHHHHHHHHHC------CCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEEcCCCCC-C
Confidence 46787773 2456677888999998 88764321 23211 122221 2 5899999999763 3
Q ss_pred CcchHHHHHHH
Q 037843 77 ESGISFRTVLE 87 (203)
Q Consensus 77 ~~~~~~~~i~~ 87 (203)
..+...+.+.+
T Consensus 86 ~~D~t~ea~~~ 96 (169)
T 1y5e_A 86 KRDVTIEAVSA 96 (169)
T ss_dssp TTCCHHHHHHT
T ss_pred CCCCcHHHHHH
Confidence 44444555555
No 128
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=89.29 E-value=1.1 Score=37.03 Aligned_cols=80 Identities=15% Similarity=0.255 Sum_probs=46.5
Q ss_pred cCCCCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHH
Q 037843 8 SKNDKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVL 86 (203)
Q Consensus 8 ~~~~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~ 86 (203)
|.+++.+|+|||-...+...+.+.|+.. |+.+.....-..-.+.+....+|.||+= ...|...+ .+.+.++
T Consensus 1 M~~~~~~iLivdD~~~~~~~l~~~L~~~------g~~v~~a~~~~~al~~~~~~~~dlvllD--~~mp~~~G~~~~~~lr 72 (394)
T 3eq2_A 1 MHKVSATLLIIDDDEVVRESLAAYLEDS------NFKVLQALNGLQGLQIFESEQPDLVICD--LRMPQIDGLELIRRIR 72 (394)
T ss_dssp ---CEEEEEEECSCHHHHHHHHHHHHHT------TEEEEECSSHHHHHHHHHHSCCSEEEEC--CCSSSSCTHHHHHHHH
T ss_pred CCCCCCEEEEEeCCHHHHHHHHHHHHhC------CCEEEEECCHHHHHHHHhhCCCCEEEEc--CCCCCCCHHHHHHHHH
Confidence 4566789999998887788888899887 8876432211111222333478988871 11222223 2345556
Q ss_pred HhCCCCcee
Q 037843 87 ELGPTMPLF 95 (203)
Q Consensus 87 ~~~~~~Pil 95 (203)
+...++||+
T Consensus 73 ~~~~~~pii 81 (394)
T 3eq2_A 73 QTASETPII 81 (394)
T ss_dssp HTTCCCCEE
T ss_pred hhCCCCcEE
Confidence 555568887
No 129
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=88.88 E-value=1.3 Score=32.30 Aligned_cols=76 Identities=17% Similarity=0.253 Sum_probs=46.9
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELGP 90 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~~ 90 (203)
+.+|+|||....+...+.+.|+.. |+.+........-.+.+....||.||+-=. .|...+ .+.+.+++...
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~------g~~v~~~~~~~~al~~~~~~~~dlvl~D~~--lp~~~g~~~~~~l~~~~~ 78 (184)
T 3rqi_A 7 DKNFLVIDDNEVFAGTLARGLERR------GYAVRQAHNKDEALKLAGAEKFEFITVXLH--LGNDSGLSLIAPLCDLQP 78 (184)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHT------TCEEEEECSHHHHHHHHTTSCCSEEEECSE--ETTEESHHHHHHHHHHCT
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHC------CCEEEEeCCHHHHHHHHhhCCCCEEEEecc--CCCccHHHHHHHHHhcCC
Confidence 468999998877778888889887 887754432111122333446899888211 122222 24555666556
Q ss_pred CCcee
Q 037843 91 TMPLF 95 (203)
Q Consensus 91 ~~Pil 95 (203)
+.||+
T Consensus 79 ~~~ii 83 (184)
T 3rqi_A 79 DARIL 83 (184)
T ss_dssp TCEEE
T ss_pred CCCEE
Confidence 78988
No 130
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=88.65 E-value=2.3 Score=28.33 Aligned_cols=76 Identities=16% Similarity=0.210 Sum_probs=44.4
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELGP 90 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~~ 90 (203)
+.+|+|+|....+...+.+.++.. |..+..........+.+....+|.+|+-=. .+...+ .+.+.+++...
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~------~~~v~~~~~~~~~~~~~~~~~~dlvi~D~~--l~~~~g~~~~~~l~~~~~ 74 (126)
T 1dbw_A 3 DYTVHIVDDEEPVRKSLAFMLTMN------GFAVKMHQSAEAFLAFAPDVRNGVLVTDLR--MPDMSGVELLRNLGDLKI 74 (126)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHT------TCEEEEESCHHHHHHHGGGCCSEEEEEECC--STTSCHHHHHHHHHHTTC
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhC------CcEEEEeCCHHHHHHHHhcCCCCEEEEECC--CCCCCHHHHHHHHHhcCC
Confidence 368999998877777888888887 887654321111112223336787776211 122222 23455565556
Q ss_pred CCcee
Q 037843 91 TMPLF 95 (203)
Q Consensus 91 ~~Pil 95 (203)
..|++
T Consensus 75 ~~~ii 79 (126)
T 1dbw_A 75 NIPSI 79 (126)
T ss_dssp CCCEE
T ss_pred CCCEE
Confidence 78988
No 131
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=88.59 E-value=0.81 Score=31.65 Aligned_cols=76 Identities=14% Similarity=0.170 Sum_probs=46.5
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCC-ceEEEEeCCcccHHHHhc--cCCCEEEECCCCCCCCCcc-hHHHHHHH
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQG-YHFEVYRNDELTVAELKR--KKPRGVVISPGPGAPQESG-ISFRTVLE 87 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g-~~~~v~~~~~~~~~~l~~--~~~dgiil~GG~~~~~~~~-~~~~~i~~ 87 (203)
+.+|+|||....+...+.+.|+.. | +.+............+.. ..+|.||+--. .+...+ .+.+.+++
T Consensus 20 ~~~ilivdd~~~~~~~l~~~L~~~------g~~~v~~~~~~~~~~~~~~~~~~~~dlvi~D~~--l~~~~g~~~~~~l~~ 91 (146)
T 4dad_A 20 MINILVASEDASRLAHLARLVGDA------GRYRVTRTVGRAAQIVQRTDGLDAFDILMIDGA--ALDTAELAAIEKLSR 91 (146)
T ss_dssp GCEEEEECSCHHHHHHHHHHHHHH------CSCEEEEECCCHHHHTTCHHHHTTCSEEEEECT--TCCHHHHHHHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHhhC------CCeEEEEeCCHHHHHHHHHhcCCCCCEEEEeCC--CCCccHHHHHHHHHH
Confidence 578999998887788888999888 7 877664332111122222 46899988221 111111 23455555
Q ss_pred hCCCCcee
Q 037843 88 LGPTMPLF 95 (203)
Q Consensus 88 ~~~~~Pil 95 (203)
.....|++
T Consensus 92 ~~~~~~ii 99 (146)
T 4dad_A 92 LHPGLTCL 99 (146)
T ss_dssp HCTTCEEE
T ss_pred hCCCCcEE
Confidence 55678988
No 132
>3mgk_A Intracellular protease/amidase related enzyme (THIJ family); amidotranferase-like, structural genomics, PSI; 2.00A {Clostridium acetobutylicum}
Probab=88.56 E-value=0.12 Score=39.63 Aligned_cols=44 Identities=11% Similarity=0.239 Sum_probs=32.8
Q ss_pred CCCEEEECCCCCCCC--CcchHHHHHHHh-CCCCcee--ehhHHHHHHH
Q 037843 62 KPRGVVISPGPGAPQ--ESGISFRTVLEL-GPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 62 ~~dgiil~GG~~~~~--~~~~~~~~i~~~-~~~~Pil--ClG~Qlla~a 105 (203)
.+|.||++||.+... ....+.+++++. .++++|. |-|-.+|+.+
T Consensus 65 ~~D~livpGG~~~~~~~~~~~~~~~l~~~~~~~k~iaaiC~G~~~La~a 113 (211)
T 3mgk_A 65 IEKILFVPGGSGTREKVNDDNFINFIGNMVKESKYIISVCTGSALLSKA 113 (211)
T ss_dssp SEEEEEECCSTHHHHHTTCHHHHHHHHHHHHHCSEEEECTTHHHHHHHT
T ss_pred CCCEEEECCCcchhhhcCCHHHHHHHHHHHHcCCEEEEEchHHHHHHhc
Confidence 379999999975321 233467778774 5778988 9999999985
No 133
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=88.26 E-value=1.4 Score=31.95 Aligned_cols=59 Identities=19% Similarity=0.155 Sum_probs=35.8
Q ss_pred CCCcEEEE-eCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcc-cHHHHhc--cCCCEEEECCCC
Q 037843 11 DKNPIVVI-DNYDSFTYNLCQYMGELELELSQGYHFEVYRNDEL-TVAELKR--KKPRGVVISPGP 72 (203)
Q Consensus 11 ~~~~i~ii-d~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~-~~~~l~~--~~~dgiil~GG~ 72 (203)
...+|+|+ ....+++..+++.+.+...+ .|+++++++.... +.+++.. .++|+||| |.|
T Consensus 3 ~~~kv~IvY~S~~GnT~~iA~~ia~~l~~--~g~~v~~~~~~~~~~~~~~~~~~~~~d~ii~-Gsp 65 (159)
T 3fni_A 3 AETSIGVFYVSEYGYSDRLAQAIINGITK--TGVGVDVVDLGAAVDLQELRELVGRCTGLVI-GMS 65 (159)
T ss_dssp CCCEEEEEECTTSTTHHHHHHHHHHHHHH--TTCEEEEEESSSCCCHHHHHHHHHTEEEEEE-ECC
T ss_pred CCCEEEEEEECCChHHHHHHHHHHHHHHH--CCCeEEEEECcCcCCHHHHHHHHHhCCEEEE-EcC
Confidence 45677777 33446677777666443211 2888888876545 5555432 25799999 544
No 134
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=88.18 E-value=1.9 Score=33.07 Aligned_cols=76 Identities=16% Similarity=0.262 Sum_probs=46.4
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELGP 90 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~~ 90 (203)
+.+|+|+|....+...+...|+.. |+.+........-.+.+....+|.||+-=. .|...+ .+.+.+++...
T Consensus 23 ~~~ILivdd~~~~~~~l~~~L~~~------g~~v~~~~~~~~al~~~~~~~~dlvllD~~--lp~~~g~~~~~~lr~~~~ 94 (250)
T 3r0j_A 23 EARVLVVDDEANIVELLSVSLKFQ------GFEVYTATNGAQALDRARETRPDAVILDVX--MPGMDGFGVLRRLRADGI 94 (250)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHT------TCEEEEESSHHHHHHHHHHHCCSEEEEESC--CSSSCHHHHHHHHHHTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHC------CCEEEEECCHHHHHHHHHhCCCCEEEEeCC--CCCCCHHHHHHHHHhcCC
Confidence 578999998877778888888887 888764422111122233347899998211 122222 23455666555
Q ss_pred CCcee
Q 037843 91 TMPLF 95 (203)
Q Consensus 91 ~~Pil 95 (203)
..||+
T Consensus 95 ~~~ii 99 (250)
T 3r0j_A 95 DAPAL 99 (250)
T ss_dssp CCCEE
T ss_pred CCCEE
Confidence 78888
No 135
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=88.00 E-value=0.68 Score=31.81 Aligned_cols=76 Identities=12% Similarity=0.167 Sum_probs=46.1
Q ss_pred CCcEEEEeCCchHHHHHHHHHHH-hhhhhcCCceEEEEeCCcccHHHHhc-cCCCEEEECCCCCCC-CCcc-hHHHHHHH
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGE-LELELSQGYHFEVYRNDELTVAELKR-KKPRGVVISPGPGAP-QESG-ISFRTVLE 87 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~-~~~~~~~g~~~~v~~~~~~~~~~l~~-~~~dgiil~GG~~~~-~~~~-~~~~~i~~ 87 (203)
+.+|+|||....+...+.+.|+. . |+.+........-.+.+.. ..+|.||+--. .+ ...+ .+.+.+++
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~~------~~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~--l~~~~~g~~~~~~l~~ 75 (140)
T 3lua_A 4 DGTVLLIDYFEYEREKTKIIFDNIG------EYDFIEVENLKKFYSIFKDLDSITLIIMDIA--FPVEKEGLEVLSAIRN 75 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHC------CCEEEEECSHHHHHTTTTTCCCCSEEEECSC--SSSHHHHHHHHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhcc------CccEEEECCHHHHHHHHhcCCCCcEEEEeCC--CCCCCcHHHHHHHHHh
Confidence 57899999888778888888888 6 8887644321111122333 46899988211 11 1111 23555666
Q ss_pred --hCCCCcee
Q 037843 88 --LGPTMPLF 95 (203)
Q Consensus 88 --~~~~~Pil 95 (203)
...+.|++
T Consensus 76 ~~~~~~~~ii 85 (140)
T 3lua_A 76 NSRTANTPVI 85 (140)
T ss_dssp SGGGTTCCEE
T ss_pred CcccCCCCEE
Confidence 45678988
No 136
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=87.97 E-value=1.8 Score=29.55 Aligned_cols=76 Identities=11% Similarity=0.149 Sum_probs=44.6
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCc--eEEEEeCCcccHHHHhc-----cCCCEEEECCCCCCCCCcc-hHHH
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGY--HFEVYRNDELTVAELKR-----KKPRGVVISPGPGAPQESG-ISFR 83 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~--~~~v~~~~~~~~~~l~~-----~~~dgiil~GG~~~~~~~~-~~~~ 83 (203)
+.+|+|||....+...+.+.++.. |. .+........-.+.+.. ..+|.||+-=. .+...+ .+.+
T Consensus 9 ~~~iLivdd~~~~~~~l~~~l~~~------~~~~~v~~~~~~~~a~~~l~~~~~~~~~~dlvi~D~~--l~~~~g~~~~~ 80 (146)
T 3ilh_A 9 IDSVLLIDDDDIVNFLNTTIIRMT------HRVEEIQSVTSGNAAINKLNELYAAGRWPSIICIDIN--MPGINGWELID 80 (146)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHTT------CCEEEEEEESSHHHHHHHHHHHHTSSCCCSEEEEESS--CSSSCHHHHHH
T ss_pred cceEEEEeCCHHHHHHHHHHHHhc------CCCeeeeecCCHHHHHHHHHHhhccCCCCCEEEEcCC--CCCCCHHHHHH
Confidence 568999998877777888888887 77 44433221111223333 46899988221 122222 2455
Q ss_pred HHHH----hCCCCcee
Q 037843 84 TVLE----LGPTMPLF 95 (203)
Q Consensus 84 ~i~~----~~~~~Pil 95 (203)
.+++ .....|++
T Consensus 81 ~l~~~~~~~~~~~~ii 96 (146)
T 3ilh_A 81 LFKQHFQPMKNKSIVC 96 (146)
T ss_dssp HHHHHCGGGTTTCEEE
T ss_pred HHHHhhhhccCCCeEE
Confidence 5666 34678887
No 137
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=87.68 E-value=0.97 Score=31.89 Aligned_cols=80 Identities=18% Similarity=0.280 Sum_probs=47.2
Q ss_pred ccCCCCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCccc-HHHHhccCCCEEEECCCCCCCCCcc-hHHHH
Q 037843 7 LSKNDKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELT-VAELKRKKPRGVVISPGPGAPQESG-ISFRT 84 (203)
Q Consensus 7 ~~~~~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~-~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~ 84 (203)
+|++ ..||+|||-.......+.+.|+.. |+.+...-.+... .+.+....||.||+= -..|.-.| .+.+.
T Consensus 8 ~m~k-~~rILiVDD~~~~r~~l~~~L~~~------G~~~v~~a~~g~~al~~~~~~~~DlillD--~~MP~mdG~el~~~ 78 (134)
T 3to5_A 8 ILNK-NMKILIVDDFSTMRRIVKNLLRDL------GFNNTQEADDGLTALPMLKKGDFDFVVTD--WNMPGMQGIDLLKN 78 (134)
T ss_dssp -CCT-TCCEEEECSCHHHHHHHHHHHHHT------TCCCEEEESSHHHHHHHHHHHCCSEEEEE--SCCSSSCHHHHHHH
T ss_pred HhCC-CCEEEEEeCCHHHHHHHHHHHHHc------CCcEEEEECCHHHHHHHHHhCCCCEEEEc--CCCCCCCHHHHHHH
Confidence 4444 368999998777778888999998 8863322222111 222333478998881 11233333 24566
Q ss_pred HHHh--CCCCcee
Q 037843 85 VLEL--GPTMPLF 95 (203)
Q Consensus 85 i~~~--~~~~Pil 95 (203)
|++. ..++||+
T Consensus 79 ir~~~~~~~ipvI 91 (134)
T 3to5_A 79 IRADEELKHLPVL 91 (134)
T ss_dssp HHHSTTTTTCCEE
T ss_pred HHhCCCCCCCeEE
Confidence 6653 3679998
No 138
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=87.43 E-value=0.69 Score=31.00 Aligned_cols=73 Identities=12% Similarity=0.180 Sum_probs=42.5
Q ss_pred CCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHH----hccCCCEEEECCCCCCCCCcc-hHHHHH
Q 037843 11 DKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAEL----KRKKPRGVVISPGPGAPQESG-ISFRTV 85 (203)
Q Consensus 11 ~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l----~~~~~dgiil~GG~~~~~~~~-~~~~~i 85 (203)
|+.+|+|+|........+.+.++.. |..+.... +..+. ....+|.||+-=. .+...+ .+.+.+
T Consensus 1 m~~~ilivdd~~~~~~~l~~~l~~~------g~~v~~~~----~~~~a~~~~~~~~~dlvi~D~~--l~~~~g~~~~~~l 68 (127)
T 2jba_A 1 MARRILVVEDEAPIREMVCFVLEQN------GFQPVEAE----DYDSAVNQLNEPWPDLILLAWM--LPGGSGIQFIKHL 68 (127)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHT------TCEEEEEC----SHHHHHTTCSSSCCSEEEEESE--ETTEEHHHHHHHH
T ss_pred CCcEEEEEcCCHHHHHHHHHHHHHC------CceEEEeC----CHHHHHHHHhccCCCEEEEecC--CCCCCHHHHHHHH
Confidence 3568999998877777888888887 88765432 22222 2236888887211 111112 234445
Q ss_pred HHhC--CCCcee
Q 037843 86 LELG--PTMPLF 95 (203)
Q Consensus 86 ~~~~--~~~Pil 95 (203)
++.. .+.|++
T Consensus 69 ~~~~~~~~~~ii 80 (127)
T 2jba_A 69 RRESMTRDIPVV 80 (127)
T ss_dssp HTSTTTTTSCEE
T ss_pred HhCcccCCCCEE
Confidence 5432 568888
No 139
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=87.34 E-value=1.5 Score=32.63 Aligned_cols=69 Identities=16% Similarity=0.139 Sum_probs=40.9
Q ss_pred CCcEEEEeCC--------------chHHHHHHHHHHHhhhhhcCCceEEE---EeCCcccH-HHHhc--cC--CCEEEEC
Q 037843 12 KNPIVVIDNY--------------DSFTYNLCQYMGELELELSQGYHFEV---YRNDELTV-AELKR--KK--PRGVVIS 69 (203)
Q Consensus 12 ~~~i~iid~~--------------~~~~~~l~~~l~~~~~~~~~g~~~~v---~~~~~~~~-~~l~~--~~--~dgiil~ 69 (203)
+++|+||--+ +++...+..++++. |+.+.. ++.+.... +.+.. .+ +|.||.+
T Consensus 15 ~~rv~IittGde~~~~~~~~G~i~Dsn~~~L~~~l~~~------G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVitt 88 (178)
T 2pjk_A 15 SLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIEN------GHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIIST 88 (178)
T ss_dssp CCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHT------TCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEE
T ss_pred CCEEEEEEeCcccccccccCCeEeehHHHHHHHHHHHC------CCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEEC
Confidence 5788888443 44566788889988 887653 33221111 12221 13 8999999
Q ss_pred CCCCCCCCcchHHHHHHH
Q 037843 70 PGPGAPQESGISFRTVLE 87 (203)
Q Consensus 70 GG~~~~~~~~~~~~~i~~ 87 (203)
||.+ +.+.+...+.+.+
T Consensus 89 GG~s-~g~~D~t~eal~~ 105 (178)
T 2pjk_A 89 GGTG-YSPTDITVETIRK 105 (178)
T ss_dssp SCCS-SSTTCCHHHHHGG
T ss_pred CCCC-CCCCcchHHHHHH
Confidence 9975 3344444555555
No 140
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=87.17 E-value=1.3 Score=29.39 Aligned_cols=75 Identities=17% Similarity=0.272 Sum_probs=43.3
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELGP 90 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~~ 90 (203)
..+|+|+|....+...+.+.++.. |..+........-...+....+|.+|+-=. .+...+ .+.+.+++ ..
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~------~~~v~~~~~~~~~~~~~~~~~~dlvi~d~~--l~~~~g~~~~~~l~~-~~ 72 (122)
T 1zgz_A 2 PHHIVIVEDEPVTQARLQSYFTQE------GYTVSVTASGAGLREIMQNQSVDLILLDIN--LPDENGLMLTRALRE-RS 72 (122)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHT------TCEEEEESSHHHHHHHHHHSCCSEEEEESC--CSSSCHHHHHHHHHT-TC
T ss_pred CcEEEEEECCHHHHHHHHHHHHHC------CCeEEEecCHHHHHHHHhcCCCCEEEEeCC--CCCCChHHHHHHHHh-cC
Confidence 357999998877778888888877 887754422111112223336898887221 122222 23444444 45
Q ss_pred CCcee
Q 037843 91 TMPLF 95 (203)
Q Consensus 91 ~~Pil 95 (203)
..|++
T Consensus 73 ~~~ii 77 (122)
T 1zgz_A 73 TVGII 77 (122)
T ss_dssp CCEEE
T ss_pred CCCEE
Confidence 67887
No 141
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=87.16 E-value=1.2 Score=32.87 Aligned_cols=69 Identities=19% Similarity=0.175 Sum_probs=39.9
Q ss_pred CCcEEEEeCC-------chHHHHHHHHHHHhhhhhcCCceEEEEe--CCccc--HHHHhc---c-CCCEEEECCCCCCCC
Q 037843 12 KNPIVVIDNY-------DSFTYNLCQYMGELELELSQGYHFEVYR--NDELT--VAELKR---K-KPRGVVISPGPGAPQ 76 (203)
Q Consensus 12 ~~~i~iid~~-------~~~~~~l~~~l~~~~~~~~~g~~~~v~~--~~~~~--~~~l~~---~-~~dgiil~GG~~~~~ 76 (203)
+++|.||--+ +++...+.+.|++. |+.+..+. .|+.. .+.+.. . ++|.||.+||.|- .
T Consensus 10 ~~~v~Ii~tGdE~g~i~D~n~~~l~~~L~~~------G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~~DlVittGG~g~-~ 82 (172)
T 1mkz_A 10 PTRIAILTVSNRRGEEDDTSGHYLRDSAQEA------GHHVVDKAIVKENRYAIRAQVSAWIASDDVQVVLITGGTGL-T 82 (172)
T ss_dssp CCEEEEEEECSSCCGGGCHHHHHHHHHHHHT------TCEEEEEEEECSCHHHHHHHHHHHHHSSSCCEEEEESCCSS-S
T ss_pred CCEEEEEEEeCCCCcccCccHHHHHHHHHHC------CCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCC-C
Confidence 4678888433 45667788899988 88765321 23211 122221 1 3899999999763 3
Q ss_pred CcchHHHHHHH
Q 037843 77 ESGISFRTVLE 87 (203)
Q Consensus 77 ~~~~~~~~i~~ 87 (203)
..+...+.+.+
T Consensus 83 ~~D~t~ea~~~ 93 (172)
T 1mkz_A 83 EGDQAPEALLP 93 (172)
T ss_dssp TTCCHHHHHGG
T ss_pred CCCCHHHHHHH
Confidence 34444444444
No 142
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=87.08 E-value=2.5 Score=31.66 Aligned_cols=76 Identities=12% Similarity=0.241 Sum_probs=46.0
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELGP 90 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~~ 90 (203)
.++|+|+|....+...+.+.|+.. |+.+..........+.+....+|.||+--. .+...+ .+.+.+++...
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~------g~~v~~~~~~~~a~~~~~~~~~dlvllD~~--l~~~~g~~~~~~l~~~~~ 78 (233)
T 1ys7_A 7 SPRVLVVDDDSDVLASLERGLRLS------GFEVATAVDGAEALRSATENRPDAIVLDIN--MPVLDGVSVVTALRAMDN 78 (233)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHT------TCEEEEESSHHHHHHHHHHSCCSEEEEESS--CSSSCHHHHHHHHHHTTC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhC------CCEEEEECCHHHHHHHHHhCCCCEEEEeCC--CCCCCHHHHHHHHHhcCC
Confidence 368999998887788888888887 887754322111122233347899988321 122222 23455565556
Q ss_pred CCcee
Q 037843 91 TMPLF 95 (203)
Q Consensus 91 ~~Pil 95 (203)
..|++
T Consensus 79 ~~~ii 83 (233)
T 1ys7_A 79 DVPVC 83 (233)
T ss_dssp CCCEE
T ss_pred CCCEE
Confidence 78888
No 143
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=86.95 E-value=1.1 Score=29.53 Aligned_cols=75 Identities=15% Similarity=0.285 Sum_probs=42.9
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELGP 90 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~~ 90 (203)
|.+|+|+|....+...+.+.++.. |..+............+....+|.+++--. .+...+ .+.+.+++. .
T Consensus 1 m~~ilivdd~~~~~~~l~~~l~~~------~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~--l~~~~g~~~~~~l~~~-~ 71 (120)
T 2a9o_A 1 MKKILIVDDEKPISDIIKFNMTKE------GYEVVTAFNGREALEQFEAEQPDIIILDLM--LPEIDGLEVAKTIRKT-S 71 (120)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHT------TCEEEEESSHHHHHHHHHHHCCSEEEECSS--CSSSCHHHHHHHHHHH-C
T ss_pred CceEEEEcCCHHHHHHHHHHHHhc------CcEEEEecCHHHHHHHHHhCCCCEEEEecc--CCCCCHHHHHHHHHhC-C
Confidence 458999998877777788888887 887754322111122233336898887321 122222 234445543 4
Q ss_pred CCcee
Q 037843 91 TMPLF 95 (203)
Q Consensus 91 ~~Pil 95 (203)
..|++
T Consensus 72 ~~~ii 76 (120)
T 2a9o_A 72 SVPIL 76 (120)
T ss_dssp CCCEE
T ss_pred CCCEE
Confidence 68887
No 144
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=86.84 E-value=3.8 Score=26.98 Aligned_cols=75 Identities=15% Similarity=0.153 Sum_probs=43.4
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELGP 90 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~~ 90 (203)
.++|+|+|........+.+.++.. |..+..........+.+....+|.||+--. .+...+ .+.+.+++. .
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~------~~~v~~~~~~~~a~~~~~~~~~dlvi~D~~--l~~~~g~~~~~~l~~~-~ 73 (123)
T 1xhf_A 3 TPHILIVEDELVTRNTLKSIFEAE------GYDVFEATDGAEMHQILSEYDINLVIMDIN--LPGKNGLLLARELREQ-A 73 (123)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTT------TCEEEEESSHHHHHHHHHHSCCSEEEECSS--CSSSCHHHHHHHHHHH-C
T ss_pred CceEEEEeCCHHHHHHHHHHHhhC------CcEEEEeCCHHHHHHHHhcCCCCEEEEcCC--CCCCCHHHHHHHHHhC-C
Confidence 368999998877777788888877 887654322111122233346898887321 122222 234445544 5
Q ss_pred CCcee
Q 037843 91 TMPLF 95 (203)
Q Consensus 91 ~~Pil 95 (203)
..|++
T Consensus 74 ~~~ii 78 (123)
T 1xhf_A 74 NVALM 78 (123)
T ss_dssp CCEEE
T ss_pred CCcEE
Confidence 68887
No 145
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=86.84 E-value=3.4 Score=28.56 Aligned_cols=72 Identities=8% Similarity=-0.007 Sum_probs=40.8
Q ss_pred eCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCC-CCCcc--hHHHHHHHh---CCCC
Q 037843 19 DNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGA-PQESG--ISFRTVLEL---GPTM 92 (203)
Q Consensus 19 d~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~-~~~~~--~~~~~i~~~---~~~~ 92 (203)
....+++..+++.+.+...+ .|+++++++..+.+.+++. ++|.||| |.|-. -.... .+..++..+ -.++
T Consensus 6 ~S~tGnT~~iA~~ia~~l~~--~g~~v~~~~~~~~~~~~l~--~~d~iii-g~pty~~g~~p~~~~~~fl~~l~~~l~~k 80 (138)
T 5nul_A 6 WSGTGNTEKMAELIAKGIIE--SGKDVNTINVSDVNIDELL--NEDILIL-GCSAMTDEVLEESEFEPFIEEISTKISGK 80 (138)
T ss_dssp ECSSSHHHHHHHHHHHHHHH--TTCCCEEEEGGGCCHHHHT--TCSEEEE-EECCBTTTBCCTTTHHHHHHHHGGGCTTC
T ss_pred ECCCchHHHHHHHHHHHHHH--CCCeEEEEEhhhCCHHHHh--hCCEEEE-EcCccCCCCCChHHHHHHHHHHHhhcCCC
Confidence 44456777777766543211 2788888776555666766 5799998 44321 11112 344555553 2567
Q ss_pred cee
Q 037843 93 PLF 95 (203)
Q Consensus 93 Pil 95 (203)
++.
T Consensus 81 ~~~ 83 (138)
T 5nul_A 81 KVA 83 (138)
T ss_dssp EEE
T ss_pred EEE
Confidence 765
No 146
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=86.71 E-value=2.8 Score=31.46 Aligned_cols=71 Identities=15% Similarity=0.146 Sum_probs=41.2
Q ss_pred CCCcEEEEeC---------CchHHHHHHHHHHH---hhhhhcCCceEEE---EeCCccc-HHHHhc----cCCCEEEECC
Q 037843 11 DKNPIVVIDN---------YDSFTYNLCQYMGE---LELELSQGYHFEV---YRNDELT-VAELKR----KKPRGVVISP 70 (203)
Q Consensus 11 ~~~~i~iid~---------~~~~~~~l~~~l~~---~~~~~~~g~~~~v---~~~~~~~-~~~l~~----~~~dgiil~G 70 (203)
.+++|.||-- .+++...+.+.|++ . |+.+.. ++.+... .+.+.. .++|.||.+|
T Consensus 13 ~~~rv~IistGdEl~~g~~~D~n~~~L~~~L~~~~~~------G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVIttG 86 (189)
T 1jlj_A 13 HQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLL------GGTISAYKIVPDEIEEIKETLIDWCDEKELNLILTTG 86 (189)
T ss_dssp CCCEEEEEEECHHHHTTSSCCHHHHHHHHHHHCTTTT------CCEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEES
T ss_pred CCCEEEEEEECCccCCCcccchHHHHHHHHHhchhcC------CcEEEEEEEeCCCHHHHHHHHHHHhhcCCCCEEEEcC
Confidence 3578888843 34566778888887 6 776643 3322111 122221 1589999999
Q ss_pred CCCCCCCcchHHHHHHHh
Q 037843 71 GPGAPQESGISFRTVLEL 88 (203)
Q Consensus 71 G~~~~~~~~~~~~~i~~~ 88 (203)
|.|- ...+...+.+.++
T Consensus 87 Gtg~-g~~D~t~eal~~~ 103 (189)
T 1jlj_A 87 GTGF-APRDVTPEATKEV 103 (189)
T ss_dssp CCSS-STTCCHHHHHHHH
T ss_pred CCCC-CCcccHHHHHHHH
Confidence 9763 4444444555553
No 147
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=86.65 E-value=2.5 Score=29.25 Aligned_cols=77 Identities=17% Similarity=0.122 Sum_probs=45.6
Q ss_pred CCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcc--cHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHH
Q 037843 11 DKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDEL--TVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLE 87 (203)
Q Consensus 11 ~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~--~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~ 87 (203)
.+.+|+|+|....+...+.+.|+.. |....+...... -.+.+....+|.||+--.. +...+ .+.+.+++
T Consensus 14 ~~~~iLivdd~~~~~~~l~~~L~~~------~~~~~v~~~~~~~~a~~~l~~~~~dlii~d~~l--~~~~g~~~~~~l~~ 85 (152)
T 3eul_A 14 EKVRVVVGDDHPLFREGVVRALSLS------GSVNVVGEADDGAAALELIKAHLPDVALLDYRM--PGMDGAQVAAAVRS 85 (152)
T ss_dssp CCEEEEEECSSHHHHHHHHHHHHHH------SSEEEEEEESSHHHHHHHHHHHCCSEEEEETTC--SSSCHHHHHHHHHH
T ss_pred ceEEEEEEcCCHHHHHHHHHHHhhC------CCeEEEEEeCCHHHHHHHHHhcCCCEEEEeCCC--CCCCHHHHHHHHHh
Confidence 4678999998887788888999888 744333222111 1222333478999983221 11122 24555666
Q ss_pred hCCCCcee
Q 037843 88 LGPTMPLF 95 (203)
Q Consensus 88 ~~~~~Pil 95 (203)
.....|++
T Consensus 86 ~~~~~~ii 93 (152)
T 3eul_A 86 YELPTRVL 93 (152)
T ss_dssp TTCSCEEE
T ss_pred cCCCCeEE
Confidence 55678888
No 148
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=86.43 E-value=2 Score=31.60 Aligned_cols=69 Identities=17% Similarity=0.156 Sum_probs=40.6
Q ss_pred CCcEEEEeCC--------------chHHHHHHHHHHHhhhhhcCCceEEEEe--CCccc--HHHHh----ccCCCEEEEC
Q 037843 12 KNPIVVIDNY--------------DSFTYNLCQYMGELELELSQGYHFEVYR--NDELT--VAELK----RKKPRGVVIS 69 (203)
Q Consensus 12 ~~~i~iid~~--------------~~~~~~l~~~l~~~~~~~~~g~~~~v~~--~~~~~--~~~l~----~~~~dgiil~ 69 (203)
+.+|+||--. |.+...+.++|+++ |+++.... .|+.. .+.+. ..++|.||.+
T Consensus 15 ~~~v~iitvsd~~~~~~~~~g~i~D~ng~~L~~~L~~~------G~~v~~~~iV~Dd~~~i~~al~~~~a~~~~DlVitt 88 (178)
T 3iwt_A 15 SLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIEN------GHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIIST 88 (178)
T ss_dssp CCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHT------TCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEE
T ss_pred CCEEEEEEEcCCCccccccCCCCCcchHHHHHHHHHHC------CCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEec
Confidence 4678888433 45566788899998 98875322 23211 11121 2368999999
Q ss_pred CCCCCCCCcchHHHHHHH
Q 037843 70 PGPGAPQESGISFRTVLE 87 (203)
Q Consensus 70 GG~~~~~~~~~~~~~i~~ 87 (203)
||.|- .+.+...+.+.+
T Consensus 89 GG~g~-~~~D~t~ea~~~ 105 (178)
T 3iwt_A 89 GGTGY-SPTDITVETIRK 105 (178)
T ss_dssp SCCSS-STTCCHHHHHGG
T ss_pred CCccc-CCCCchHHHHHH
Confidence 99763 344444444444
No 149
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=86.25 E-value=0.34 Score=33.33 Aligned_cols=72 Identities=15% Similarity=0.301 Sum_probs=43.9
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHh----ccCCCEEEECCCCCCCC--Ccc-hHHHH
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELK----RKKPRGVVISPGPGAPQ--ESG-ISFRT 84 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~----~~~~dgiil~GG~~~~~--~~~-~~~~~ 84 (203)
+.+|+|+|....+...+.+.|+.. |+.+.... +.++.. ...+|.||+--. .+. ..+ .+.+.
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~------g~~v~~~~----~~~~a~~~l~~~~~dlvi~D~~--l~~~~~~g~~~~~~ 73 (136)
T 3kto_A 6 HPIIYLVDHQKDARAALSKLLSPL------DVTIQCFA----SAESFMRQQISDDAIGMIIEAH--LEDKKDSGIELLET 73 (136)
T ss_dssp -CEEEEECSCHHHHHHHHHHHTTS------SSEEEEES----SHHHHTTSCCCTTEEEEEEETT--GGGBTTHHHHHHHH
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHC------CcEEEEeC----CHHHHHHHHhccCCCEEEEeCc--CCCCCccHHHHHHH
Confidence 578999998877777888888887 88776432 233322 235788887211 121 112 23455
Q ss_pred HHHhCCCCcee
Q 037843 85 VLELGPTMPLF 95 (203)
Q Consensus 85 i~~~~~~~Pil 95 (203)
+++...+.|++
T Consensus 74 l~~~~~~~~ii 84 (136)
T 3kto_A 74 LVKRGFHLPTI 84 (136)
T ss_dssp HHHTTCCCCEE
T ss_pred HHhCCCCCCEE
Confidence 56555678988
No 150
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=86.12 E-value=2.5 Score=33.83 Aligned_cols=53 Identities=13% Similarity=0.037 Sum_probs=34.5
Q ss_pred CCCCcEEEEeCCchH--------HHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEE
Q 037843 10 NDKNPIVVIDNYDSF--------TYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVI 68 (203)
Q Consensus 10 ~~~~~i~iid~~~~~--------~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil 68 (203)
+|+++|+||--+.|- ...+.+++++. |+++..+...+.....+...++|.++.
T Consensus 11 ~~~~~v~vl~gg~s~E~~vsl~s~~~v~~al~~~------g~~v~~i~~~~~~~~~l~~~~~D~v~~ 71 (317)
T 4eg0_A 11 KRFGKVAVLFGGESAEREVSLTSGRLVLQGLRDA------GIDAHPFDPAERPLSALKDEGFVRAFN 71 (317)
T ss_dssp GGGCEEEEECCCSSTTHHHHHHHHHHHHHHHHHT------TCEEEEECTTTSCTTHHHHTTCCEEEE
T ss_pred hhcceEEEEECCCCCcceeeHHHHHHHHHHHHHC------CCEEEEEeCCCchHHHhhhcCCCEEEE
Confidence 456789999765432 24566788887 999988864332233444446898875
No 151
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=86.01 E-value=4.7 Score=29.60 Aligned_cols=56 Identities=18% Similarity=0.218 Sum_probs=33.4
Q ss_pred CCcEEEEeC-CchHHHHHHHHHHHhhhhhcCCceEEEEeCCc-------------------ccHHHHhccCCCEEEECCC
Q 037843 12 KNPIVVIDN-YDSFTYNLCQYMGELELELSQGYHFEVYRNDE-------------------LTVAELKRKKPRGVVISPG 71 (203)
Q Consensus 12 ~~~i~iid~-~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~-------------------~~~~~l~~~~~dgiil~GG 71 (203)
|++|+||-. -.+++..+++++.+...+ .|++++++...+ ...+++. ++|+||| |.
T Consensus 5 M~kilii~~S~~g~T~~la~~i~~~l~~--~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~aD~ii~-gs 79 (200)
T 2a5l_A 5 SPYILVLYYSRHGATAEMARQIARGVEQ--GGFEARVRTVPAVSTECEAVAPDIPAEGALYATLEDLK--NCAGLAL-GS 79 (200)
T ss_dssp CCEEEEEECCSSSHHHHHHHHHHHHHHH--TTCEEEEEBCCCEEC-------------CCBCCHHHHH--TCSEEEE-EE
T ss_pred cceEEEEEeCCCChHHHHHHHHHHHHhh--CCCEEEEEEhhhccchhhhhccccccccCchhhHHHHH--HCCEEEE-Ec
Confidence 457888743 245677777666543211 278888776433 1244555 5799999 55
Q ss_pred C
Q 037843 72 P 72 (203)
Q Consensus 72 ~ 72 (203)
|
T Consensus 80 P 80 (200)
T 2a5l_A 80 P 80 (200)
T ss_dssp E
T ss_pred C
Confidence 4
No 152
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=86.00 E-value=2 Score=31.71 Aligned_cols=76 Identities=16% Similarity=0.254 Sum_probs=44.7
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELGP 90 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~~ 90 (203)
.++|+|+|....+...+.+.|+.. |+.+..........+.+....+|.||+-= ..|...+ .+.+.+++...
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~------g~~v~~~~~~~~al~~~~~~~~dlvl~D~--~lp~~~g~~~~~~l~~~~~ 75 (208)
T 1yio_A 4 KPTVFVVDDDMSVREGLRNLLRSA------GFEVETFDCASTFLEHRRPEQHGCLVLDM--RMPGMSGIELQEQLTAISD 75 (208)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTT------TCEEEEESSHHHHHHHCCTTSCEEEEEES--CCSSSCHHHHHHHHHHTTC
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhC------CceEEEcCCHHHHHHhhhccCCCEEEEeC--CCCCCCHHHHHHHHHhcCC
Confidence 468999998887778888888877 88876432110011112223578887721 1122222 23455665556
Q ss_pred CCcee
Q 037843 91 TMPLF 95 (203)
Q Consensus 91 ~~Pil 95 (203)
+.|++
T Consensus 76 ~~~ii 80 (208)
T 1yio_A 76 GIPIV 80 (208)
T ss_dssp CCCEE
T ss_pred CCCEE
Confidence 78988
No 153
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=85.92 E-value=2.8 Score=29.02 Aligned_cols=76 Identities=14% Similarity=0.179 Sum_probs=44.5
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCc--eEEEEeCCcccHHHHh---------ccCCCEEEECCCCCCCCCcc-
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGY--HFEVYRNDELTVAELK---------RKKPRGVVISPGPGAPQESG- 79 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~--~~~v~~~~~~~~~~l~---------~~~~dgiil~GG~~~~~~~~- 79 (203)
+.+|+|||........+.+.|+.. |. .+..........+.+. ...+|.||+-=. .+...+
T Consensus 4 ~~~ILivddd~~~~~~l~~~L~~~------g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~--l~~~~g~ 75 (152)
T 3heb_A 4 SVTIVMIEDDLGHARLIEKNIRRA------GVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLN--LPDMTGI 75 (152)
T ss_dssp -CEEEEECCCHHHHHHHHHHHHHT------TCCCCEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSB--CSSSBHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHhC------CCcceEEEeCCHHHHHHHHhccccccccccCCCCEEEEeCC--CCCCcHH
Confidence 478999998877788888999888 77 4444322111122231 236888888221 122222
Q ss_pred hHHHHHHH--hCCCCcee
Q 037843 80 ISFRTVLE--LGPTMPLF 95 (203)
Q Consensus 80 ~~~~~i~~--~~~~~Pil 95 (203)
.+.+.+++ ...+.|++
T Consensus 76 ~~~~~lr~~~~~~~~pii 93 (152)
T 3heb_A 76 DILKLVKENPHTRRSPVV 93 (152)
T ss_dssp HHHHHHHHSTTTTTSCEE
T ss_pred HHHHHHHhcccccCCCEE
Confidence 24556666 34678988
No 154
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=85.46 E-value=1.7 Score=29.66 Aligned_cols=76 Identities=14% Similarity=0.161 Sum_probs=44.8
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHh--
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLEL-- 88 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~-- 88 (203)
+.+|+|+|....+...+.+.|+.. |+.+..........+.+....+|.||+-=. .+...+ .+.+.+++.
T Consensus 3 ~~~ILivdd~~~~~~~l~~~L~~~------g~~v~~~~~~~~al~~l~~~~~dlvi~D~~--l~~~~g~~~~~~l~~~~~ 74 (138)
T 3c3m_A 3 LYTILVVDDSPMIVDVFVTMLERG------GYRPITAFSGEECLEALNATPPDLVLLDIM--MEPMDGWETLERIKTDPA 74 (138)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHT------TCEEEEESSHHHHHHHHHHSCCSEEEEESC--CSSSCHHHHHHHHHHSTT
T ss_pred cceEEEEeCCHHHHHHHHHHHHHc------CceEEEeCCHHHHHHHHhccCCCEEEEeCC--CCCCCHHHHHHHHHcCcc
Confidence 468999998877778888888887 887664321111122233346898887221 122222 234555553
Q ss_pred CCCCcee
Q 037843 89 GPTMPLF 95 (203)
Q Consensus 89 ~~~~Pil 95 (203)
...+||+
T Consensus 75 ~~~~~ii 81 (138)
T 3c3m_A 75 TRDIPVL 81 (138)
T ss_dssp TTTSCEE
T ss_pred cCCCCEE
Confidence 3468988
No 155
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=85.42 E-value=2.8 Score=29.72 Aligned_cols=80 Identities=14% Similarity=0.192 Sum_probs=41.8
Q ss_pred ccCCCCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEE-EeCCc-ccHHHHhccCCCEEEECCCCCCCCCcc-hHHH
Q 037843 7 LSKNDKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEV-YRNDE-LTVAELKRKKPRGVVISPGPGAPQESG-ISFR 83 (203)
Q Consensus 7 ~~~~~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v-~~~~~-~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~ 83 (203)
=|...+.+|+|+|........+.+.|+.. |....+ .-.+. ...+.+....+|.||+--. .+...+ .+.+
T Consensus 20 ~M~~~~~~ILivdd~~~~~~~l~~~L~~~------~~~~~v~~~~~~~~al~~l~~~~~dlvilD~~--l~~~~g~~l~~ 91 (164)
T 3t8y_A 20 HMTDRVIRVLVVDDSAFMRMVLKDIIDSQ------PDMKVVGFAKDGLEAVEKAIELKPDVITMDIE--MPNLNGIEALK 91 (164)
T ss_dssp ----CCEEEEEECSCHHHHHHHHHHHHTS------TTEEEEEEESSHHHHHHHHHHHCCSEEEECSS--CSSSCHHHHHH
T ss_pred ccccCccEEEEEcCCHHHHHHHHHHHhcC------CCeEEEEecCCHHHHHHHhccCCCCEEEEeCC--CCCCCHHHHHH
Confidence 34445678999998877777788888776 432222 21111 1122233347899988321 111222 2345
Q ss_pred HHHHhCCCCcee
Q 037843 84 TVLELGPTMPLF 95 (203)
Q Consensus 84 ~i~~~~~~~Pil 95 (203)
.+++... .|++
T Consensus 92 ~lr~~~~-~~ii 102 (164)
T 3t8y_A 92 LIMKKAP-TRVI 102 (164)
T ss_dssp HHHHHSC-CEEE
T ss_pred HHHhcCC-ceEE
Confidence 5555444 7777
No 156
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=85.36 E-value=4.2 Score=31.35 Aligned_cols=76 Identities=21% Similarity=0.298 Sum_probs=47.4
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELGP 90 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~~ 90 (203)
..+|+|+|....+...+.+.|+.. |+.+........-.+.+....+|.||+-=. .+...+ .+.+.|++...
T Consensus 129 ~~~ILivdd~~~~~~~l~~~L~~~------g~~v~~a~~~~eal~~l~~~~~dlvl~D~~--mp~~~G~~l~~~ir~~~~ 200 (254)
T 2ayx_A 129 DMMILVVDDHPINRRLLADQLGSL------GYQCKTANDGVDALNVLSKNHIDIVLSDVN--MPNMDGYRLTQRIRQLGL 200 (254)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHH------TSEEEEECCSHHHHHHHHHSCCSEEEEEES--SCSSCCHHHHHHHHHHHC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHc------CCEEEEECCHHHHHHHHHhCCCCEEEEcCC--CCCCCHHHHHHHHHhcCC
Confidence 467999998877778888899888 998765533211223333446898887211 122222 24555666545
Q ss_pred CCcee
Q 037843 91 TMPLF 95 (203)
Q Consensus 91 ~~Pil 95 (203)
..||+
T Consensus 201 ~~piI 205 (254)
T 2ayx_A 201 TLPVI 205 (254)
T ss_dssp CSCEE
T ss_pred CCcEE
Confidence 78998
No 157
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=85.28 E-value=3.3 Score=28.17 Aligned_cols=55 Identities=11% Similarity=0.141 Sum_probs=31.2
Q ss_pred CCCCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcc-cHHHHhccCCCEEEE
Q 037843 9 KNDKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDEL-TVAELKRKKPRGVVI 68 (203)
Q Consensus 9 ~~~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~-~~~~l~~~~~dgiil 68 (203)
+..+.+|+|+|....+...+.+.|+... |+.+...-.+.. ....+....+|.||+
T Consensus 6 ~~~~~~iLivdd~~~~~~~l~~~L~~~~-----~~~~v~~~~~~~~al~~l~~~~~dlvi~ 61 (143)
T 2qv0_A 6 SGEKMKVIIVEDEFLAQQELSWLINTHS-----QMEIVGSFDDGLDVLKFLQHNKVDAIFL 61 (143)
T ss_dssp ----CEEEEECSCHHHHHHHHHHHHHHS-----CCEEEEEESCHHHHHHHHHHCCCSEEEE
T ss_pred CCCceEEEEEcCCHHHHHHHHHHHHhCC-----CceEEEEeCCHHHHHHHHHhCCCCEEEE
Confidence 3446789999988777778888887751 555322211111 112233346899988
No 158
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=85.21 E-value=3.5 Score=32.76 Aligned_cols=75 Identities=17% Similarity=0.189 Sum_probs=39.6
Q ss_pred cCCCCCcEEEEeCCch-----HHHHHHHHHHHhhhhhcCCceEEEEeCC----------cccHHHHhccCCCEEEECCCC
Q 037843 8 SKNDKNPIVVIDNYDS-----FTYNLCQYMGELELELSQGYHFEVYRND----------ELTVAELKRKKPRGVVISPGP 72 (203)
Q Consensus 8 ~~~~~~~i~iid~~~~-----~~~~l~~~l~~~~~~~~~g~~~~v~~~~----------~~~~~~l~~~~~dgiil~GG~ 72 (203)
|+..|++|+||-+..+ ....+.+++++. |+++.+.... ....++.. .++|.||..||.
T Consensus 1 m~~~mkki~ii~np~~~~~~~~~~~i~~~l~~~------g~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~D~vi~~GGD 73 (292)
T 2an1_A 1 MNNHFKCIGIVGHPRHPTALTTHEMLYRWLCDQ------GYEVIVEQQIAHELQLKNVPTGTLAEIG-QQADLAVVVGGD 73 (292)
T ss_dssp ---CCCEEEEECC-------CHHHHHHHHHHHT------TCEEEEEHHHHHHTTCSSCCEECHHHHH-HHCSEEEECSCH
T ss_pred CCCcCcEEEEEEcCCCHHHHHHHHHHHHHHHHC------CCEEEEecchhhhcccccccccchhhcc-cCCCEEEEEcCc
Confidence 3444678988855321 234466677777 8887664310 01122222 257999999996
Q ss_pred CCCCCcchHHHHHHHh-CCCCcee
Q 037843 73 GAPQESGISFRTVLEL-GPTMPLF 95 (203)
Q Consensus 73 ~~~~~~~~~~~~i~~~-~~~~Pil 95 (203)
|. +.+.++.+ ..++|+|
T Consensus 74 GT------~l~a~~~~~~~~~P~l 91 (292)
T 2an1_A 74 GN------MLGAARTLARYDINVI 91 (292)
T ss_dssp HH------HHHHHHHHTTSSCEEE
T ss_pred HH------HHHHHHHhhcCCCCEE
Confidence 53 33444443 3356766
No 159
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=84.93 E-value=1.4 Score=29.07 Aligned_cols=75 Identities=13% Similarity=0.223 Sum_probs=41.3
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELGP 90 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~~ 90 (203)
|.+|+|+|....+...+.+.++.. |..+............+....+|.+++--. .+...+ .+.+.+++ ..
T Consensus 1 m~~ilivdd~~~~~~~l~~~l~~~------~~~v~~~~~~~~~~~~~~~~~~dlvi~D~~--l~~~~g~~~~~~l~~-~~ 71 (121)
T 1zh2_A 1 MTNVLIVEDEQAIRRFLRTALEGD------GMRVFEAETLQRGLLEAATRKPDLIILDLG--LPDGDGIEFIRDLRQ-WS 71 (121)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHTT------TCEEEEESSHHHHHHHHHHHCCSEEEEESE--ETTEEHHHHHHHHHT-TC
T ss_pred CcEEEEEeCCHHHHHHHHHHHhcC------CCEEEEeCCHHHHHHHHhcCCCCEEEEeCC--CCCCcHHHHHHHHHh-CC
Confidence 357999998877777788888877 887654322111122222336898887211 111122 22344443 34
Q ss_pred CCcee
Q 037843 91 TMPLF 95 (203)
Q Consensus 91 ~~Pil 95 (203)
..|++
T Consensus 72 ~~~ii 76 (121)
T 1zh2_A 72 AVPVI 76 (121)
T ss_dssp CCCEE
T ss_pred CCcEE
Confidence 67887
No 160
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=84.55 E-value=2 Score=29.32 Aligned_cols=76 Identities=16% Similarity=0.290 Sum_probs=45.6
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHh--
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLEL-- 88 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~-- 88 (203)
+.+|+|+|........+.+.++.. |+.+........-.+.+....+|.||+-= ..+...+ .+.+.+++.
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~------g~~v~~~~~~~~al~~~~~~~~dlvl~D~--~lp~~~g~~~~~~lr~~~~ 75 (136)
T 3t6k_A 4 PHTLLIVDDDDTVAEMLELVLRGA------GYEVRRAASGEEALQQIYKNLPDALICDV--LLPGIDGYTLCKRVRQHPL 75 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHT------TCEEEEESSHHHHHHHHHHSCCSEEEEES--CCSSSCHHHHHHHHHHSGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHC------CCEEEEeCCHHHHHHHHHhCCCCEEEEeC--CCCCCCHHHHHHHHHcCCC
Confidence 367999998877778888888887 88776442211112223334789988821 1222222 234555552
Q ss_pred CCCCcee
Q 037843 89 GPTMPLF 95 (203)
Q Consensus 89 ~~~~Pil 95 (203)
...+|++
T Consensus 76 ~~~~pii 82 (136)
T 3t6k_A 76 TKTLPIL 82 (136)
T ss_dssp GTTCCEE
T ss_pred cCCccEE
Confidence 3578988
No 161
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=84.38 E-value=1.8 Score=30.47 Aligned_cols=54 Identities=13% Similarity=0.203 Sum_probs=33.0
Q ss_pred CCcEEEE-eCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEE
Q 037843 12 KNPIVVI-DNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVI 68 (203)
Q Consensus 12 ~~~i~ii-d~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil 68 (203)
|++|+|+ ....+++..+++.+.+... ..|+++++++..+.+.+++.. ++|.|||
T Consensus 1 M~ki~I~y~S~tGnT~~~A~~ia~~l~--~~g~~v~~~~~~~~~~~~l~~-~~d~ii~ 55 (148)
T 3f6r_A 1 MSKVLIVFGSSTGNTESIAQKLEELIA--AGGHEVTLLNAADASAENLAD-GYDAVLF 55 (148)
T ss_dssp -CEEEEEEECSSSHHHHHHHHHHHHHH--TTTCEEEEEETTTBCCTTTTT-TCSEEEE
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHH--hCCCeEEEEehhhCCHhHhcc-cCCEEEE
Confidence 3567666 4455677777776655321 227888888765444445441 4799888
No 162
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=84.37 E-value=4.4 Score=27.27 Aligned_cols=76 Identities=9% Similarity=0.228 Sum_probs=41.9
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCC-ceEEEEeCCccc-HHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHh
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQG-YHFEVYRNDELT-VAELKRKKPRGVVISPGPGAPQESG-ISFRTVLEL 88 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g-~~~~v~~~~~~~-~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~ 88 (203)
+.+|+|+|....+...+.+.++.. | ......-.+... .+.+....+|.||+-=. .+...+ .+.+.+++.
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~l~~~------~~~~~v~~~~~~~~al~~~~~~~~dlvilD~~--lp~~~g~~~~~~l~~~ 74 (133)
T 3b2n_A 3 LTSLIIAEDQNMLRQAMVQLIKLH------GDFEILADTDNGLDAMKLIEEYNPNVVILDIE--MPGMTGLEVLAEIRKK 74 (133)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHH------SSEEEEEEESCHHHHHHHHHHHCCSEEEECSS--CSSSCHHHHHHHHHHT
T ss_pred ceEEEEECCCHHHHHHHHHHHhhC------CCcEEEEEcCCHHHHHHHHhhcCCCEEEEecC--CCCCCHHHHHHHHHHH
Confidence 357999998877777788888877 5 222211111111 12223336898888211 122222 234556654
Q ss_pred CCCCcee
Q 037843 89 GPTMPLF 95 (203)
Q Consensus 89 ~~~~Pil 95 (203)
....|++
T Consensus 75 ~~~~~ii 81 (133)
T 3b2n_A 75 HLNIKVI 81 (133)
T ss_dssp TCSCEEE
T ss_pred CCCCcEE
Confidence 4578988
No 163
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=83.79 E-value=3.9 Score=30.35 Aligned_cols=79 Identities=13% Similarity=0.176 Sum_probs=46.6
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCc-eEEEEeCCcccHHHHhc-------------cCCCEEEECCCCCCCCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGY-HFEVYRNDELTVAELKR-------------KKPRGVVISPGPGAPQE 77 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~-~~~v~~~~~~~~~~l~~-------------~~~dgiil~GG~~~~~~ 77 (203)
..+|+|||....+...+.+.|+.. |+ .+........-.+.+.. ..||.||+-=. .+..
T Consensus 61 ~~~ILiVdDd~~~~~~l~~~L~~~------g~~~v~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~--lp~~ 132 (206)
T 3mm4_A 61 GKRVLVVDDNFISRKVATGKLKKM------GVSEVEQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQ--MPEM 132 (206)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHHT------TCSEEEEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESC--CSSS
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHc------CCCeeeeeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcCC--CCCC
Confidence 468999998887788888999988 87 56554321111222222 26899888211 1222
Q ss_pred cc-hHHHHHHHh----CCCCcee-ehh
Q 037843 78 SG-ISFRTVLEL----GPTMPLF-CMG 98 (203)
Q Consensus 78 ~~-~~~~~i~~~----~~~~Pil-ClG 98 (203)
.+ .+.+.|++. ...+||+ +-|
T Consensus 133 ~G~el~~~lr~~~~~~~~~~piI~ls~ 159 (206)
T 3mm4_A 133 DGYEATREIRKVEKSYGVRTPIIAVSG 159 (206)
T ss_dssp CHHHHHHHHHHHHHTTTCCCCEEEEES
T ss_pred CHHHHHHHHHhhhhhcCCCCcEEEEEC
Confidence 22 234555553 4678998 544
No 164
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=83.61 E-value=5.6 Score=27.41 Aligned_cols=77 Identities=8% Similarity=0.049 Sum_probs=42.7
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCc-eEEEEeCCcccHHHHhc-cCCCEEEECCCCCCCCCcc-hHHHHHHHh
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGY-HFEVYRNDELTVAELKR-KKPRGVVISPGPGAPQESG-ISFRTVLEL 88 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~-~~~v~~~~~~~~~~l~~-~~~dgiil~GG~~~~~~~~-~~~~~i~~~ 88 (203)
+.+|+|+|....+...+.+.|+... |. .+............+.. ..+|.||+--.. +...+ .+.+.+++.
T Consensus 3 ~~~iLivdd~~~~~~~l~~~L~~~~-----g~~~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l--~~~~g~~~~~~l~~~ 75 (154)
T 2qsj_A 3 LTVVLIVDDHHLIRAGAKNLLEGAF-----SGMRVEGAETVSDALAFLEADNTVDLILLDVNL--PDAEAIDGLVRLKRF 75 (154)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHHC-----TTEEEEEESSHHHHHHHHHTTCCCSEEEECC--------CHHHHHHHHHH
T ss_pred ccEEEEEcCCHHHHHHHHHHHHhCC-----CceEEEEecCHHHHHHHHhccCCCCEEEEeCCC--CCCchHHHHHHHHHh
Confidence 3579999988777778888887751 45 33333221111233334 468999883221 11122 245556665
Q ss_pred CCCCcee
Q 037843 89 GPTMPLF 95 (203)
Q Consensus 89 ~~~~Pil 95 (203)
....|++
T Consensus 76 ~~~~~ii 82 (154)
T 2qsj_A 76 DPSNAVA 82 (154)
T ss_dssp CTTSEEE
T ss_pred CCCCeEE
Confidence 5678988
No 165
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=83.44 E-value=2.7 Score=30.32 Aligned_cols=56 Identities=20% Similarity=0.279 Sum_probs=33.2
Q ss_pred cEEEE-eCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhc--cCCCEEEECCCC
Q 037843 14 PIVVI-DNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKR--KKPRGVVISPGP 72 (203)
Q Consensus 14 ~i~ii-d~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~--~~~dgiil~GG~ 72 (203)
+|+|+ ....+++..+++.+.+...+ .|+.+++++....+.+++.. .++|+||| |.|
T Consensus 2 kv~IvY~S~tGnT~~~A~~ia~~l~~--~g~~v~~~~~~~~~~~~~~~~~~~~d~ii~-Gsp 60 (161)
T 3hly_A 2 SVLIGYLSDYGYSDRLSQAIGRGLVK--TGVAVEMVDLRAVDPQELIEAVSSARGIVL-GTP 60 (161)
T ss_dssp CEEEEECTTSTTHHHHHHHHHHHHHH--TTCCEEEEETTTCCHHHHHHHHHHCSEEEE-ECC
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHh--CCCeEEEEECCCCCHHHHHHHHHhCCEEEE-EcC
Confidence 45555 34446677777666443211 27888888765455555431 25799999 544
No 166
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=83.41 E-value=1.6 Score=30.16 Aligned_cols=76 Identities=12% Similarity=0.173 Sum_probs=42.1
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHh--
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLEL-- 88 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~-- 88 (203)
+.+|+|+|........+.+.++.. |..+........-.+.+....+|.||+-=. .+...+ .+.+.+++.
T Consensus 14 ~~~iLivdd~~~~~~~l~~~L~~~------g~~v~~~~~~~~al~~~~~~~~dlvl~D~~--mp~~~g~~~~~~lr~~~~ 85 (143)
T 3m6m_D 14 SMRMLVADDHEANRMVLQRLLEKA------GHKVLCVNGAEQVLDAMAEEDYDAVIVDLH--MPGMNGLDMLKQLRVMQA 85 (143)
T ss_dssp -CEEEEECSSHHHHHHHHHHHHC--------CEEEEESSHHHHHHHHHHSCCSEEEEESC--CSSSCHHHHHHHHHHHHH
T ss_pred cceEEEEeCCHHHHHHHHHHHHHc------CCeEEEeCCHHHHHHHHhcCCCCEEEEeCC--CCCCCHHHHHHHHHhchh
Confidence 468999998777777788888887 887765432111122233347899988211 122222 234555532
Q ss_pred --CCCCcee
Q 037843 89 --GPTMPLF 95 (203)
Q Consensus 89 --~~~~Pil 95 (203)
....|++
T Consensus 86 ~~~~~~pii 94 (143)
T 3m6m_D 86 SGMRYTPVV 94 (143)
T ss_dssp TTCCCCCEE
T ss_pred ccCCCCeEE
Confidence 2457888
No 167
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=83.38 E-value=1.8 Score=32.49 Aligned_cols=76 Identities=16% Similarity=0.274 Sum_probs=44.7
Q ss_pred CCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhC
Q 037843 11 DKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELG 89 (203)
Q Consensus 11 ~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~ 89 (203)
|+.+|+|+|....+...+.+.|+.. |..+..........+.+....+|.||+--. .+...+ .+.+.+++.
T Consensus 3 M~~~ilivdd~~~~~~~l~~~L~~~------g~~v~~~~~~~~al~~~~~~~~dlvllD~~--l~~~~g~~~~~~l~~~- 73 (230)
T 2oqr_A 3 MATSVLIVEDEESLADPLAFLLRKE------GFEATVVTDGPAALAEFDRAGADIVLLDLM--LPGMSGTDVCKQLRAR- 73 (230)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHT------TCEEEEECSHHHHHHHHHHHCCSEEEEESS--CSSSCHHHHHHHHHHH-
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHC------CCEEEEECCHHHHHHHHhccCCCEEEEECC--CCCCCHHHHHHHHHcC-
Confidence 4578999998887778888888887 888764322111122233336899888321 122222 234445554
Q ss_pred CCCcee
Q 037843 90 PTMPLF 95 (203)
Q Consensus 90 ~~~Pil 95 (203)
...|++
T Consensus 74 ~~~~ii 79 (230)
T 2oqr_A 74 SSVPVI 79 (230)
T ss_dssp CSCSEE
T ss_pred CCCCEE
Confidence 468888
No 168
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=83.16 E-value=5.9 Score=29.11 Aligned_cols=57 Identities=23% Similarity=0.259 Sum_probs=34.1
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcc--------------------cHHHHhccCCCEEEECCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDEL--------------------TVAELKRKKPRGVVISPG 71 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~--------------------~~~~l~~~~~dgiil~GG 71 (203)
|++|+||-.-.+++..+++.+.+...+ .|++++++...+. ..+++. ++|+||| |.
T Consensus 4 mmkilii~~S~g~T~~la~~i~~~l~~--~g~~v~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~l~--~aD~ii~-gs 78 (199)
T 2zki_A 4 KPNILVLFYGYGSIVELAKEIGKGAEE--AGAEVKIRRVRETLPPEFQSRIPFDKVKDIPEVTLDDMR--WADGFAI-GS 78 (199)
T ss_dssp CCEEEEEECCSSHHHHHHHHHHHHHHH--HSCEEEEEECCCCSCGGGGTTCCGGGSTTSCBCCHHHHH--HCSEEEE-EE
T ss_pred CcEEEEEEeCccHHHHHHHHHHHHHHh--CCCEEEEEehhHhCChhhhhccCCCcccccccccHHHHH--hCCEEEE-EC
Confidence 357888854466777777665443211 1788887754322 144555 5799999 55
Q ss_pred CC
Q 037843 72 PG 73 (203)
Q Consensus 72 ~~ 73 (203)
|-
T Consensus 79 P~ 80 (199)
T 2zki_A 79 PT 80 (199)
T ss_dssp EC
T ss_pred Cc
Confidence 53
No 169
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=83.10 E-value=4.6 Score=27.88 Aligned_cols=75 Identities=12% Similarity=0.208 Sum_probs=42.2
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccC-CCEEEECCCCCCCCCcc-hHHHHHHHhC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKK-PRGVVISPGPGAPQESG-ISFRTVLELG 89 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~-~dgiil~GG~~~~~~~~-~~~~~i~~~~ 89 (203)
+.+|+|||....+...+.+.|+ . |+.+..........+.+.... ||.||+--.- +...+ .+.+.+++..
T Consensus 4 ~~~ILivdd~~~~~~~l~~~L~-~------~~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l--~~~~g~~~~~~l~~~~ 74 (151)
T 3kcn_A 4 NERILLVDDDYSLLNTLKRNLS-F------DFEVTTCESGPEALACIKKSDPFSVIMVDMRM--PGMEGTEVIQKARLIS 74 (151)
T ss_dssp CCEEEEECSCHHHHHHHHHHHT-T------TSEEEEESSHHHHHHHHHHSCCCSEEEEESCC--SSSCHHHHHHHHHHHC
T ss_pred CCeEEEEeCCHHHHHHHHHHhc-c------CceEEEeCCHHHHHHHHHcCCCCCEEEEeCCC--CCCcHHHHHHHHHhcC
Confidence 5789999987766666766663 3 777665432111122233334 5998883221 11222 2455566656
Q ss_pred CCCcee
Q 037843 90 PTMPLF 95 (203)
Q Consensus 90 ~~~Pil 95 (203)
...|++
T Consensus 75 ~~~~ii 80 (151)
T 3kcn_A 75 PNSVYL 80 (151)
T ss_dssp SSCEEE
T ss_pred CCcEEE
Confidence 678988
No 170
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=83.10 E-value=2.2 Score=28.20 Aligned_cols=75 Identities=13% Similarity=0.198 Sum_probs=43.6
Q ss_pred CcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHh--C
Q 037843 13 NPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLEL--G 89 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~--~ 89 (203)
++|+|+|....+...+.+.++.. |+.+............+....+|.||+-=. .+...+ .+.+.+++. .
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~------~~~v~~~~~~~~a~~~~~~~~~dlvi~D~~--l~~~~g~~~~~~l~~~~~~ 73 (124)
T 1mb3_A 2 KKVLIVEDNELNMKLFHDLLEAQ------GYETLQTREGLSALSIARENKPDLILMDIQ--LPEISGLEVTKWLKEDDDL 73 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHT------TCEEEEESCHHHHHHHHHHHCCSEEEEESB--CSSSBHHHHHHHHHHSTTT
T ss_pred cEEEEEcCCHHHHHHHHHHHHHc------CcEEEEeCCHHHHHHHHhcCCCCEEEEeCC--CCCCCHHHHHHHHHcCccc
Confidence 57999998877778888888887 887654321111112222336898887211 122222 234555553 2
Q ss_pred CCCcee
Q 037843 90 PTMPLF 95 (203)
Q Consensus 90 ~~~Pil 95 (203)
..+|++
T Consensus 74 ~~~~ii 79 (124)
T 1mb3_A 74 AHIPVV 79 (124)
T ss_dssp TTSCEE
T ss_pred cCCcEE
Confidence 468888
No 171
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=82.69 E-value=1 Score=30.44 Aligned_cols=72 Identities=14% Similarity=0.140 Sum_probs=43.3
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHh---ccCCCEEEECCCCCCCCCcc-hHHHHHHH
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELK---RKKPRGVVISPGPGAPQESG-ISFRTVLE 87 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~---~~~~dgiil~GG~~~~~~~~-~~~~~i~~ 87 (203)
+.+|+|||........+.+.|+.. +..+.... +.++.. ...+|.||+--. .+...+ .+.+.+++
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~------~~~v~~~~----~~~~~~~~~~~~~dlvi~D~~--l~~~~g~~~~~~l~~ 70 (135)
T 3eqz_A 3 LNRVFIVDDDTLTCNLLKTIVEPI------FGNVEAFQ----HPRAFLTLSLNKQDIIILDLM--MPDMDGIEVIRHLAE 70 (135)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTT------CSCEEEES----CHHHHTTSCCCTTEEEEEECC--TTTTHHHHHHHHHHH
T ss_pred cceEEEEeCCHHHHHHHHHHHHhh------cceeeeec----CHHHHHHhhccCCCEEEEeCC--CCCCCHHHHHHHHHh
Confidence 478999998877777788888776 76665542 233322 123788887321 111122 23455666
Q ss_pred hCCCCcee
Q 037843 88 LGPTMPLF 95 (203)
Q Consensus 88 ~~~~~Pil 95 (203)
.....|++
T Consensus 71 ~~~~~~ii 78 (135)
T 3eqz_A 71 HKSPASLI 78 (135)
T ss_dssp TTCCCEEE
T ss_pred CCCCCCEE
Confidence 55678888
No 172
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=82.66 E-value=1.9 Score=29.44 Aligned_cols=51 Identities=6% Similarity=0.116 Sum_probs=33.4
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEE
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVI 68 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil 68 (203)
+.+|+|+|....+...+...++.. |..+..........+.+....+|.||+
T Consensus 10 ~~~iLivdd~~~~~~~l~~~L~~~------~~~v~~~~~~~~al~~l~~~~~dlvll 60 (140)
T 3c97_A 10 PLSVLIAEDNDICRLVAAKALEKC------TNDITVVTNGLQALQAYQNRQFDVIIM 60 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHTTT------CSEEEEESSHHHHHHHHHHSCCSEEEE
T ss_pred CceEEEEcCCHHHHHHHHHHHHHc------CCceEEECCHHHHHHHHhcCCCCEEEE
Confidence 458999998877777788888777 877765432111122233346898888
No 173
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=82.19 E-value=5.3 Score=31.35 Aligned_cols=53 Identities=21% Similarity=0.083 Sum_probs=33.7
Q ss_pred CCCcEEEEeCCch--------HHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEEC
Q 037843 11 DKNPIVVIDNYDS--------FTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVIS 69 (203)
Q Consensus 11 ~~~~i~iid~~~~--------~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~ 69 (203)
|+++|+||..+.+ -...+.+++++. |+++.++..++.....+...++|.++..
T Consensus 1 m~~~i~il~gg~s~e~~~s~~~~~~l~~al~~~------G~~v~~~~~~~~~~~~~~~~~~d~v~~~ 61 (306)
T 1iow_A 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREG------GIDAYPVDPKEVDVTQLKSMGFQKVFIA 61 (306)
T ss_dssp CCCEEEEECCCSSTTHHHHHHHHHHHHHHHHHT------TCEEEEECTTTSCGGGTTTTTEEEEEEC
T ss_pred CCcEEEEEeCCCCccceEcHHhHHHHHHHHHHC------CCeEEEEecCchHHHHhhccCCCEEEEc
Confidence 3578999976653 234577788888 9999887654332233333367887754
No 174
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=82.19 E-value=2.7 Score=31.73 Aligned_cols=69 Identities=12% Similarity=0.091 Sum_probs=38.8
Q ss_pred CCcEEEEe---------CCchHHHHHHHHHHHhhhhhcCCce-----EEEEeCCcccH-HHHhc----cCCCEEEECCCC
Q 037843 12 KNPIVVID---------NYDSFTYNLCQYMGELELELSQGYH-----FEVYRNDELTV-AELKR----KKPRGVVISPGP 72 (203)
Q Consensus 12 ~~~i~iid---------~~~~~~~~l~~~l~~~~~~~~~g~~-----~~v~~~~~~~~-~~l~~----~~~dgiil~GG~ 72 (203)
+++|.||- ..+++...+.+++++. |+. ..+++.+.... +.+.. .++|.||.+||.
T Consensus 3 ~~rv~IIttGdEl~~G~i~D~n~~~L~~~L~~~------G~~~~v~~~~iV~Dd~~~I~~al~~a~~~~~~DlVitTGGt 76 (195)
T 1di6_A 3 TLRIGLVSISDRASSGVYQDKGIPALEEWLTSA------LTTPFELETRLIPDEQAIIEQTLCELVDEMSCHLVLTTGGT 76 (195)
T ss_dssp CEEEEEEEEECC-------CCHHHHHHHHHHHH------BCSCEEEEEEEEESCHHHHHHHHHHHHHTSCCSEEEEESCC
T ss_pred CCEEEEEEECCCCCCCeEEchHHHHHHHHHHHc------CCCCceEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 46777773 3456677888999988 765 23444331111 22221 158999999997
Q ss_pred CCCCCcchHHHHHHH
Q 037843 73 GAPQESGISFRTVLE 87 (203)
Q Consensus 73 ~~~~~~~~~~~~i~~ 87 (203)
|- ...+...+.+.+
T Consensus 77 g~-g~~D~T~ea~~~ 90 (195)
T 1di6_A 77 GP-ARRDVTPDATLA 90 (195)
T ss_dssp SS-STTCCHHHHHHH
T ss_pred CC-CCCccHHHHHHH
Confidence 63 333334455554
No 175
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=81.43 E-value=3.8 Score=30.46 Aligned_cols=70 Identities=9% Similarity=0.085 Sum_probs=42.1
Q ss_pred cEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCCCC
Q 037843 14 PIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELGPTM 92 (203)
Q Consensus 14 ~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~~~~ 92 (203)
+|+|+|....+...+...|+.. |+.+..........+.+....+|.||+ ++ ..+ .+.+.+++.....
T Consensus 2 ~ilivdd~~~~~~~l~~~L~~~------g~~v~~~~~~~~al~~l~~~~~dlvil-p~-----~~g~~~~~~lr~~~~~~ 69 (223)
T 2hqr_A 2 RVLLIEKNSVLGGEIEKGLNVK------GFMADVTESLEDGEYLMDIRNYDLVMV-SD-----KNALSFVSRIKEKHSSI 69 (223)
T ss_dssp CEEEECSCHHHHHHHHHHHGGG------TCCEEEESSHHHHHHHHTTSCCSEEEE-CC-----TTHHHHHHHHHHHCTTS
T ss_pred EEEEEcCCHHHHHHHHHHHHHC------CcEEEEECCHHHHHHHHhcCCCCEEEe-CC-----CCHHHHHHHHHhCCCCC
Confidence 6999998877777888888877 888764322111122233346898882 22 122 2345555552278
Q ss_pred cee
Q 037843 93 PLF 95 (203)
Q Consensus 93 Pil 95 (203)
|++
T Consensus 70 ~ii 72 (223)
T 2hqr_A 70 VVL 72 (223)
T ss_dssp EEE
T ss_pred cEE
Confidence 988
No 176
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=81.12 E-value=3.2 Score=28.44 Aligned_cols=82 Identities=13% Similarity=0.171 Sum_probs=41.9
Q ss_pred CCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCccc-HHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHh
Q 037843 11 DKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELT-VAELKRKKPRGVVISPGPGAPQESG-ISFRTVLEL 88 (203)
Q Consensus 11 ~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~-~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~ 88 (203)
||.+|+|+|....+...+.+.++.. ..|..+...-.+... ...+....+|.||+--. .+...+ .+.+.+++.
T Consensus 1 m~~~ILivdd~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~al~~~~~~~~dlvllD~~--lp~~~g~~l~~~l~~~ 74 (141)
T 3cu5_A 1 MSLRILIVDDEKLTRDGLIANINWK----ALSFDQIDQADDGINAIQIALKHPPNVLLTDVR--MPRMDGIELVDNILKL 74 (141)
T ss_dssp -CCEEEEECSCHHHHHHHHHHCCGG----GSCCSEEEEESSHHHHHHHHTTSCCSEEEEESC--CSSSCHHHHHHHHHHH
T ss_pred CcceEEEEeCCHHHHHHHHHHHHHc----cCCcEEeeecccHHHHHHHHhcCCCCEEEEeCC--CCCCCHHHHHHHHHhh
Confidence 3568999998766666666666532 015654412121111 12233346898887221 122222 234555655
Q ss_pred CCCCcee-ehh
Q 037843 89 GPTMPLF-CMG 98 (203)
Q Consensus 89 ~~~~Pil-ClG 98 (203)
....|++ +-+
T Consensus 75 ~~~~~ii~ls~ 85 (141)
T 3cu5_A 75 YPDCSVIFMSG 85 (141)
T ss_dssp CTTCEEEEECC
T ss_pred CCCCcEEEEeC
Confidence 5678888 533
No 177
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=81.05 E-value=2.9 Score=28.48 Aligned_cols=75 Identities=16% Similarity=0.227 Sum_probs=43.1
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELGP 90 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~~ 90 (203)
+.+|+|+|....+...+.+.|+.. |..+..........+.+....+|.||+-=. .+...+ .+.+.+++..
T Consensus 4 ~~~Ilivdd~~~~~~~l~~~L~~~------g~~v~~~~~~~~al~~~~~~~~dlvllD~~--l~~~~g~~l~~~l~~~~- 74 (136)
T 2qzj_A 4 QTKILIIDGDKDNCQKLKGFLEEK------GISIDLAYNCEEAIGKIFSNKYDLIFLEII--LSDGDGWTLCKKIRNVT- 74 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTT------TCEEEEESSHHHHHHHHHHCCCSEEEEESE--ETTEEHHHHHHHHHTTC-
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHC------CCEEEEECCHHHHHHHHHhcCCCEEEEeCC--CCCCCHHHHHHHHccCC-
Confidence 468999998877777888888877 887654322111122233346898887211 111122 2334444433
Q ss_pred CCcee
Q 037843 91 TMPLF 95 (203)
Q Consensus 91 ~~Pil 95 (203)
..|++
T Consensus 75 ~~~ii 79 (136)
T 2qzj_A 75 TCPIV 79 (136)
T ss_dssp CCCEE
T ss_pred CCCEE
Confidence 68887
No 178
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=80.79 E-value=4.3 Score=31.15 Aligned_cols=59 Identities=12% Similarity=0.262 Sum_probs=33.8
Q ss_pred CCCCcEEEEeCCc-------hHHHHHHHHHHHhhhhhcCCceEEEEeCCc-ccH----HHHhccCCCEEEECCCCC
Q 037843 10 NDKNPIVVIDNYD-------SFTYNLCQYMGELELELSQGYHFEVYRNDE-LTV----AELKRKKPRGVVISPGPG 73 (203)
Q Consensus 10 ~~~~~i~iid~~~-------~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~-~~~----~~l~~~~~dgiil~GG~~ 73 (203)
+.|++|+||.... ++...+.+.+.+...+ .|.+++++..++ .+. +.+. ..|+||+ +.|.
T Consensus 23 ~~M~kiLiI~gsp~~~~s~~s~n~~L~~~~~~~l~~--~g~ev~~~dL~~~~Dv~~~~~~l~--~aD~iv~-~~P~ 93 (218)
T 3rpe_A 23 NAMSNVLIINAMKEFAHSKGALNLTLTNVAADFLRE--SGHQVKITTVDQGYDIESEIENYL--WADTIIY-QMPA 93 (218)
T ss_dssp -CCCCEEEEECCCCBTTBCSHHHHHHHHHHHHHHHH--TTCCEEEEEGGGCCCHHHHHHHHH--HCSEEEE-EEEC
T ss_pred ccCcceEEEEeCCCcccCCChHHHHHHHHHHHHHhh--CCCEEEEEECCCccCHHHHHHHHH--hCCEEEE-ECCh
Confidence 3467899996543 5666666655443221 288888776432 222 2333 5799999 4443
No 179
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=80.27 E-value=2.5 Score=28.16 Aligned_cols=76 Identities=13% Similarity=0.180 Sum_probs=41.4
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCc-eEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHh-
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGY-HFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLEL- 88 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~-~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~- 88 (203)
+.+|+|+|........+.+.++.. |. .+..........+.+....+|.||+-=. .+...+ .+.+.+++.
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~------g~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~--l~~~~g~~~~~~l~~~~ 77 (129)
T 1p6q_A 6 KIKVLIVDDQVTSRLLLGDALQQL------GFKQITAAGDGEQGMKIMAQNPHHLVISDFN--MPKMDGLGLLQAVRANP 77 (129)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHTT------TCSCEECCSSHHHHHHHHHTSCCSEEEECSS--SCSSCHHHHHHHHTTCT
T ss_pred cCeEEEEcCCHHHHHHHHHHHHHC------CCcEEEecCCHHHHHHHHHcCCCCEEEEeCC--CCCCCHHHHHHHHhcCc
Confidence 578999998877777788888877 77 4433211111122233346898887211 122222 223444432
Q ss_pred -CCCCcee
Q 037843 89 -GPTMPLF 95 (203)
Q Consensus 89 -~~~~Pil 95 (203)
....|++
T Consensus 78 ~~~~~~ii 85 (129)
T 1p6q_A 78 ATKKAAFI 85 (129)
T ss_dssp TSTTCEEE
T ss_pred cccCCCEE
Confidence 2467887
No 180
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=79.62 E-value=2.6 Score=28.64 Aligned_cols=73 Identities=7% Similarity=0.013 Sum_probs=40.3
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEe--CCcccHHHHhccCCCEEEECCCCCCCCCcchHHHHHHH-h
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYR--NDELTVAELKRKKPRGVVISPGPGAPQESGISFRTVLE-L 88 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~--~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~-~ 88 (203)
+++|+++-..+.-+..+++.+++...+ .|+++++.. ..+ .++... ++|.|+++| .-.+. .+.+++ .
T Consensus 6 ~mkIlL~C~aGmSTsllv~km~~~a~~--~gi~v~i~a~~~~~--~~~~~~-~~DvvLLgP--QV~y~----~~~ik~~~ 74 (108)
T 3nbm_A 6 ELKVLVLCAGSGTSAQLANAINEGANL--TEVRVIANSGAYGA--HYDIMG-VYDLIILAP--QVRSY----YREMKVDA 74 (108)
T ss_dssp CEEEEEEESSSSHHHHHHHHHHHHHHH--HTCSEEEEEEETTS--CTTTGG-GCSEEEECG--GGGGG----HHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHH--CCCceEEEEcchHH--HHhhcc-CCCEEEECh--HHHHH----HHHHHHHh
Confidence 457888877665567777766554322 288887743 321 222222 689999943 21111 233333 3
Q ss_pred -CCCCcee
Q 037843 89 -GPTMPLF 95 (203)
Q Consensus 89 -~~~~Pil 95 (203)
..++|+.
T Consensus 75 ~~~~ipV~ 82 (108)
T 3nbm_A 75 ERLGIQIV 82 (108)
T ss_dssp TTTTCEEE
T ss_pred hhcCCcEE
Confidence 2468887
No 181
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=79.56 E-value=3.3 Score=30.45 Aligned_cols=76 Identities=14% Similarity=0.245 Sum_probs=43.6
Q ss_pred CCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEE-EEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHh
Q 037843 11 DKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFE-VYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLEL 88 (203)
Q Consensus 11 ~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~-v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~ 88 (203)
+..+|+|+|....+...+.+.|+.. |+.+. ...........+....+|.||+-=. .+...+ .+.+.+++.
T Consensus 12 m~~~iLivdd~~~~~~~l~~~L~~~------g~~v~~~~~~~~~al~~~~~~~~dlvi~D~~--~p~~~g~~~~~~l~~~ 83 (205)
T 1s8n_A 12 VPRRVLIAEDEALIRMDLAEMLREE------GYEIVGEAGDGQEAVELAELHKPDLVIMDVK--MPRRDGIDAASEIASK 83 (205)
T ss_dssp CCCEEEEECSSHHHHHHHHHHHHHT------TCEEEEEESSHHHHHHHHHHHCCSEEEEESS--CSSSCHHHHHHHHHHT
T ss_pred CCccEEEEECCHHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHhhcCCCEEEEeCC--CCCCChHHHHHHHHhc
Confidence 4468999998887778888888887 88875 3321111122233336899888211 122222 234445553
Q ss_pred CCCCcee
Q 037843 89 GPTMPLF 95 (203)
Q Consensus 89 ~~~~Pil 95 (203)
. ..|++
T Consensus 84 ~-~~pii 89 (205)
T 1s8n_A 84 R-IAPIV 89 (205)
T ss_dssp T-CSCEE
T ss_pred C-CCCEE
Confidence 3 24887
No 182
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=79.34 E-value=5.3 Score=29.60 Aligned_cols=79 Identities=15% Similarity=0.040 Sum_probs=43.9
Q ss_pred CCcEEEEeCC---chHHHHHHHHHHHh-hhhhcCCceEEEEeCCcccH-----------------HHHhccCCCEEEECC
Q 037843 12 KNPIVVIDNY---DSFTYNLCQYMGEL-ELELSQGYHFEVYRNDELTV-----------------AELKRKKPRGVVISP 70 (203)
Q Consensus 12 ~~~i~iid~~---~~~~~~l~~~l~~~-~~~~~~g~~~~v~~~~~~~~-----------------~~l~~~~~dgiil~G 70 (203)
|++|+||... .+++..+++++.+. ..+. |.+++++...+.+. +++. .+|+||| +
T Consensus 2 Mmkilii~gS~r~~g~t~~la~~i~~~~l~~~--g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~i~--~aD~ii~-~ 76 (197)
T 2vzf_A 2 TYSIVAISGSPSRNSTTAKLAEYALAHVLARS--DSQGRHIHVIDLDPKALLRGDLSNAKLKEAVDATC--NADGLIV-A 76 (197)
T ss_dssp CEEEEEEECCSSTTCHHHHHHHHHHHHHHHHS--SEEEEEEEGGGSCHHHHHHTCTTSHHHHHHHHHHH--HCSEEEE-E
T ss_pred CceEEEEECCCCCCChHHHHHHHHHHHHHHHC--CCeEEEEEccccCchhhcccccCcHHHHHHHHHHH--HCCEEEE-E
Confidence 5678888654 37787777766443 2221 78888776433221 2233 5799999 4
Q ss_pred CCCCCCCc-chHHHHHHHh----CCCCcee
Q 037843 71 GPGAPQES-GISFRTVLEL----GPTMPLF 95 (203)
Q Consensus 71 G~~~~~~~-~~~~~~i~~~----~~~~Pil 95 (203)
.|---... +.+..++..+ -.++|+.
T Consensus 77 sP~y~~~~p~~lK~~ld~l~~~~~~gK~~~ 106 (197)
T 2vzf_A 77 TPIYKASYTGLLKAFLDILPQFALAGKAAL 106 (197)
T ss_dssp EECBTTBCCHHHHHHHTTSCTTTTTTCEEE
T ss_pred eCccCCCCCHHHHHHHHhccccccCCCEEE
Confidence 44322222 2334455443 2468877
No 183
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=78.89 E-value=11 Score=28.98 Aligned_cols=62 Identities=13% Similarity=0.080 Sum_probs=30.5
Q ss_pred cCCCCCcEEEEeC--CchHHHHHHHHHHHhhhhhcCCceEEEEeCCccc------HHHHhccCCCEEEECCC
Q 037843 8 SKNDKNPIVVIDN--YDSFTYNLCQYMGELELELSQGYHFEVYRNDELT------VAELKRKKPRGVVISPG 71 (203)
Q Consensus 8 ~~~~~~~i~iid~--~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~------~~~l~~~~~dgiil~GG 71 (203)
.++...+|.+|-. ...|...+.+.+++...+ .|+.+.+...+... .+.+...++||||+.+.
T Consensus 4 ~~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~--~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 73 (293)
T 3l6u_A 4 TSPKRNIVGFTIVNDKHEFAQRLINAFKAEAKA--NKYEALVATSQNSRISEREQILEFVHLKVDAIFITTL 73 (293)
T ss_dssp -----CEEEEEESCSCSHHHHHHHHHHHHHHHH--TTCEEEEEECSSCHHHHHHHHHHHHHTTCSEEEEECS
T ss_pred CCCCCcEEEEEEecCCcHHHHHHHHHHHHHHHH--cCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 3444567877733 333444444444333211 19998887654211 12223347999999764
No 184
>1g8l_A Molybdopterin biosynthesis MOEA protein; molybdenum cofactor biosynthesis, metal binding protein; 1.95A {Escherichia coli} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1fc5_A 1g8r_A 2nqu_A 2nro_A 2nqq_A 2nqk_A 2nqr_A 2nqm_A 2nqs_A 2nrp_A 2nqv_A 2nrs_A 2nqn_A
Probab=78.61 E-value=6.8 Score=33.06 Aligned_cols=59 Identities=17% Similarity=0.147 Sum_probs=34.8
Q ss_pred chHHHHHHHHHHHhhhhhcCCceEEEEe--CCccc--HHHHhc--cCCCEEEECCCCCCCCCcchHHHHHHH
Q 037843 22 DSFTYNLCQYMGELELELSQGYHFEVYR--NDELT--VAELKR--KKPRGVVISPGPGAPQESGISFRTVLE 87 (203)
Q Consensus 22 ~~~~~~l~~~l~~~~~~~~~g~~~~v~~--~~~~~--~~~l~~--~~~dgiil~GG~~~~~~~~~~~~~i~~ 87 (203)
+++...+..++++. |+.+..+. .|+.. .+.+.. .++|.||.+||.+ +.+.+...+.+.+
T Consensus 203 dsn~~~L~~~l~~~------G~~v~~~~iv~Dd~~~i~~al~~a~~~~DlvittGG~s-~g~~D~t~~al~~ 267 (411)
T 1g8l_A 203 DTNRLAVHLMLEQL------GCEVINLGIIRDDPHALRAAFIEADSQADVVISSGGVS-VGEADYTKTILEE 267 (411)
T ss_dssp CCHHHHHHHHHHHT------TCEEEEEEEECSCHHHHHHHHHHHHHHCSEEEECSSSC-SSSCSHHHHHHHH
T ss_pred cCchHHHHHHHHHC------CCEEEEEEEeCCCHHHHHHHHHHHhhcCCEEEECCCCC-CCCcccHHHHHHh
Confidence 46677899999998 88765322 23211 112221 1579999999975 3445544444444
No 185
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=78.40 E-value=12 Score=30.91 Aligned_cols=79 Identities=10% Similarity=0.063 Sum_probs=44.0
Q ss_pred CCcEEEE-eCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHH----HHhccCCCEEEECCCCCCCCC-cchHHHHH
Q 037843 12 KNPIVVI-DNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVA----ELKRKKPRGVVISPGPGAPQE-SGISFRTV 85 (203)
Q Consensus 12 ~~~i~ii-d~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~----~l~~~~~dgiil~GG~~~~~~-~~~~~~~i 85 (203)
+++|+|+ -...+++..+++.+.+...+ .|++++++...+.+.. ++. ++|+||| |.|---.. ...+..++
T Consensus 256 ~~kv~iiy~S~~GnT~~la~~i~~~l~~--~g~~v~~~~l~~~~~~~~~~~l~--~~D~iii-gsP~y~~~~~~~~k~fl 330 (414)
T 2q9u_A 256 QKKVTVVLDSMYGTTHRMALALLDGARS--TGCETVLLEMTSSDITKVALHTY--DSGAVAF-ASPTLNNTMMPSVAAAL 330 (414)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHH--TTCEEEEEEGGGCCHHHHHHHHH--TCSEEEE-ECCCBTTBCCHHHHHHH
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHh--CCCeEEEEEcCcCCHHHHHHHHH--hCCEEEE-EcCccCcCchHHHHHHH
Confidence 5677776 33346677777766554221 2778887765444444 444 6799999 44432221 22334444
Q ss_pred HHh----C-CCCcee
Q 037843 86 LEL----G-PTMPLF 95 (203)
Q Consensus 86 ~~~----~-~~~Pil 95 (203)
..+ . .++|+.
T Consensus 331 d~l~~~~~~~~K~~~ 345 (414)
T 2q9u_A 331 NYVRGLTLIKGKPAF 345 (414)
T ss_dssp HHHHHHTTTTTSBEE
T ss_pred HHHHhhcccCCCEEE
Confidence 442 2 578876
No 186
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=78.00 E-value=5.6 Score=26.91 Aligned_cols=75 Identities=16% Similarity=0.231 Sum_probs=39.5
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhC-
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELG- 89 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~- 89 (203)
+++|+|+|....+...+.+.|+. ...+..........+.+....+|.||+--.- +...+ .+.+.+++..
T Consensus 3 ~~~iLivdd~~~~~~~l~~~l~~-------~~~v~~~~~~~~a~~~~~~~~~dlvi~D~~l--~~~~g~~~~~~l~~~~~ 73 (140)
T 3n53_A 3 LKKILIIDQQDFSRIELKNFLDS-------EYLVIESKNEKEALEQIDHHHPDLVILDMDI--IGENSPNLCLKLKRSKG 73 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTT-------TSEEEEESSHHHHHHHHHHHCCSEEEEETTC--------CHHHHHHTSTT
T ss_pred CCEEEEEeCCHHHHHHHHHHHHh-------cceEEEeCCHHHHHHHHhcCCCCEEEEeCCC--CCCcHHHHHHHHHcCcc
Confidence 47899999877666666666644 2344333211111222333478999983221 11112 2455566543
Q ss_pred -CCCcee
Q 037843 90 -PTMPLF 95 (203)
Q Consensus 90 -~~~Pil 95 (203)
.+.|++
T Consensus 74 ~~~~~ii 80 (140)
T 3n53_A 74 LKNVPLI 80 (140)
T ss_dssp CTTCCEE
T ss_pred cCCCCEE
Confidence 678988
No 187
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=77.74 E-value=3.5 Score=31.68 Aligned_cols=74 Identities=15% Similarity=0.292 Sum_probs=42.4
Q ss_pred CcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCCC
Q 037843 13 NPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELGPT 91 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~~~ 91 (203)
.+|+|||....+...+...|+.. |..+..........+.+....||.||+-=. .|...+ .+.+.+++ ...
T Consensus 38 ~~ILivdd~~~~~~~l~~~L~~~------g~~v~~~~~~~~al~~~~~~~~DlvllD~~--lp~~~G~~l~~~lr~-~~~ 108 (249)
T 3q9s_A 38 QRILVIEDDHDIANVLRMDLTDA------GYVVDHADSAMNGLIKAREDHPDLILLDLG--LPDFDGGDVVQRLRK-NSA 108 (249)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTT------TCEEEEESSHHHHHHHHHHSCCSEEEEECC--SCHHHHHHHHHHHHT-TCC
T ss_pred CEEEEEECCHHHHHHHHHHHHHC------CCEEEEeCCHHHHHHHHhcCCCCEEEEcCC--CCCCCHHHHHHHHHc-CCC
Confidence 57999998877777888888877 876654322111122233347899998211 111111 12344444 356
Q ss_pred Ccee
Q 037843 92 MPLF 95 (203)
Q Consensus 92 ~Pil 95 (203)
.||+
T Consensus 109 ~~iI 112 (249)
T 3q9s_A 109 LPII 112 (249)
T ss_dssp CCEE
T ss_pred CCEE
Confidence 8888
No 188
>2bmv_A Flavodoxin; electron transport, flavoprotein, FMN, transport protein; 2.11A {Helicobacter pylori} PDB: 2w5u_A* 1fue_A*
Probab=77.72 E-value=7.3 Score=27.80 Aligned_cols=48 Identities=10% Similarity=0.110 Sum_probs=31.8
Q ss_pred CcEEEE-eCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEE
Q 037843 13 NPIVVI-DNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVI 68 (203)
Q Consensus 13 ~~i~ii-d~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil 68 (203)
++++|+ ....+++..+++.+.+.. |. +++++..+.+..++. ++|.|||
T Consensus 2 ~k~~I~Y~S~tGnT~~~A~~ia~~l-----g~-~~~~~~~~~~~~~l~--~~d~ii~ 50 (164)
T 2bmv_A 2 GKIGIFFGTDSGNAEAIAEKISKAI-----GN-AEVVDVAKASKEQFN--SFTKVIL 50 (164)
T ss_dssp CCEEEEECCSSSHHHHHHHHHHHHH-----CS-EEEEEGGGCCHHHHT--TCSEEEE
T ss_pred CeEEEEEECCCchHHHHHHHHHHHc-----CC-cEEEecccCCHhHHh--hCCEEEE
Confidence 456665 444567888888776642 66 667665444566665 5799998
No 189
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=77.65 E-value=12 Score=28.81 Aligned_cols=58 Identities=12% Similarity=0.124 Sum_probs=31.5
Q ss_pred cCCCCCcEEEEeC--CchHHHHHH----HHHHHhhhhhcCCceEEEEeCCccc------HHHHhccCCCEEEECCC
Q 037843 8 SKNDKNPIVVIDN--YDSFTYNLC----QYMGELELELSQGYHFEVYRNDELT------VAELKRKKPRGVVISPG 71 (203)
Q Consensus 8 ~~~~~~~i~iid~--~~~~~~~l~----~~l~~~~~~~~~g~~~~v~~~~~~~------~~~l~~~~~dgiil~GG 71 (203)
|++...+|.+|-. .+.|...+. +++++. |+.+.+....... .+.+...++||||+.+.
T Consensus 1 ~s~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~------g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 70 (291)
T 3l49_A 1 MSLEGKTIGITAIGTDHDWDLKAYQAQIAEIERL------GGTAIALDAGRNDQTQVSQIQTLIAQKPDAIIEQLG 70 (291)
T ss_dssp -CCTTCEEEEEESCCSSHHHHHHHHHHHHHHHHT------TCEEEEEECTTCHHHHHHHHHHHHHHCCSEEEEESS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHHHc------CCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 3444567877733 333433344 344444 9998887654211 11222347999999764
No 190
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=77.47 E-value=16 Score=28.09 Aligned_cols=63 Identities=14% Similarity=0.226 Sum_probs=32.1
Q ss_pred cCCCCCcEEEEe--CCchHHHHHHHHHHHhhhhhcCCceEEEEeCCccc------HHHHhccCCCEEEECCCC
Q 037843 8 SKNDKNPIVVID--NYDSFTYNLCQYMGELELELSQGYHFEVYRNDELT------VAELKRKKPRGVVISPGP 72 (203)
Q Consensus 8 ~~~~~~~i~iid--~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~------~~~l~~~~~dgiil~GG~ 72 (203)
.+....+|.++- ....|...+.+.+++...+ .|+.+.+...+... .+.+...++||||+.+..
T Consensus 4 ~~~~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~--~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 74 (291)
T 3egc_A 4 RSKRSNVVGLIVSDIENVFFAEVASGVESEARH--KGYSVLLANTAEDIVREREAVGQFFERRVDGLILAPSE 74 (291)
T ss_dssp ---CCCEEEEEESCTTSHHHHHHHHHHHHHHHH--TTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCS
T ss_pred ccCCCcEEEEEECCCcchHHHHHHHHHHHHHHH--CCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 334456777763 3334444444444333211 19998887654211 112333479999997754
No 191
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=77.30 E-value=3.6 Score=30.19 Aligned_cols=39 Identities=13% Similarity=0.072 Sum_probs=22.5
Q ss_pred CCcEEEEeC-CchHHHHHHHHHHHhhhhhcCCceEEEEeCC
Q 037843 12 KNPIVVIDN-YDSFTYNLCQYMGELELELSQGYHFEVYRND 51 (203)
Q Consensus 12 ~~~i~iid~-~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~ 51 (203)
|++|+||-. ..+++..+++++.+...+ ..|++++++...
T Consensus 1 Mmkilii~~S~~g~t~~la~~i~~~l~~-~~g~~v~~~~l~ 40 (198)
T 3b6i_A 1 MAKVLVLYYSMYGHIETMARAVAEGASK-VDGAEVVVKRVP 40 (198)
T ss_dssp -CEEEEEECCSSSHHHHHHHHHHHHHHT-STTCEEEEEECC
T ss_pred CCeEEEEEeCCCcHHHHHHHHHHHHHhh-cCCCEEEEEEcc
Confidence 357877743 345677777766553211 028888887653
No 192
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=77.27 E-value=3.2 Score=30.87 Aligned_cols=72 Identities=19% Similarity=0.229 Sum_probs=42.6
Q ss_pred CCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHH-hc-cCCCEEEECCCCCCCCCcc-hHHHHHHH
Q 037843 11 DKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAEL-KR-KKPRGVVISPGPGAPQESG-ISFRTVLE 87 (203)
Q Consensus 11 ~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l-~~-~~~dgiil~GG~~~~~~~~-~~~~~i~~ 87 (203)
||.+|+|+|....+...+.+.|+.. | .+.... +.++. .. ..+|.||+--. .+...+ .+.+.+++
T Consensus 1 Mm~~ilivdd~~~~~~~l~~~L~~~------~-~v~~~~----~~~~al~~~~~~dlvllD~~--lp~~~g~~~~~~lr~ 67 (220)
T 1p2f_A 1 MMWKIAVVDDDKNILKKVSEKLQQL------G-RVKTFL----TGEDFLNDEEAFHVVVLDVM--LPDYSGYEICRMIKE 67 (220)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTTT------E-EEEEES----SHHHHHHCCSCCSEEEEESB--CSSSBHHHHHHHHHH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhC------C-CEEEEC----CHHHHHHhcCCCCEEEEeCC--CCCCCHHHHHHHHHh
Confidence 4678999998877777788888776 7 544332 22222 21 36898887211 122222 23455665
Q ss_pred hCCCCcee
Q 037843 88 LGPTMPLF 95 (203)
Q Consensus 88 ~~~~~Pil 95 (203)
.....|++
T Consensus 68 ~~~~~~ii 75 (220)
T 1p2f_A 68 TRPETWVI 75 (220)
T ss_dssp HCTTSEEE
T ss_pred cCCCCcEE
Confidence 55678988
No 193
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=77.16 E-value=6 Score=26.15 Aligned_cols=76 Identities=16% Similarity=0.270 Sum_probs=42.1
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCc-eEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHh-
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGY-HFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLEL- 88 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~-~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~- 88 (203)
..+|+|+|....+...+.+.++.. |. .+............+....+|.+|+-=. .+...+ .+.+.+++.
T Consensus 4 ~~~ilivdd~~~~~~~l~~~l~~~------~~~~v~~~~~~~~a~~~~~~~~~dlvi~D~~--l~~~~g~~l~~~l~~~~ 75 (128)
T 1jbe_A 4 ELKFLVVDDFSTMRRIVRNLLKEL------GFNNVEEAEDGVDALNKLQAGGYGFVISDWN--MPNMDGLELLKTIRAXX 75 (128)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHT------TCCCEEEESSHHHHHHHHTTCCCCEEEEESC--CSSSCHHHHHHHHHC--
T ss_pred ccEEEEECCCHHHHHHHHHHHHHc------CCcEEEeeCCHHHHHHHHHhcCCCEEEEeCC--CCCCCHHHHHHHHHhhc
Confidence 357999998877777788888877 77 4444322111122233346898887211 122222 234445542
Q ss_pred -CCCCcee
Q 037843 89 -GPTMPLF 95 (203)
Q Consensus 89 -~~~~Pil 95 (203)
....|++
T Consensus 76 ~~~~~~ii 83 (128)
T 1jbe_A 76 AMSALPVL 83 (128)
T ss_dssp CCTTCCEE
T ss_pred ccCCCcEE
Confidence 3467887
No 194
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=76.83 E-value=19 Score=26.17 Aligned_cols=39 Identities=18% Similarity=0.057 Sum_probs=23.1
Q ss_pred CCcEEEEeCC----chHHHHHHHHHHHhhhhhcCCceEEEEeC
Q 037843 12 KNPIVVIDNY----DSFTYNLCQYMGELELELSQGYHFEVYRN 50 (203)
Q Consensus 12 ~~~i~iid~~----~~~~~~l~~~l~~~~~~~~~g~~~~v~~~ 50 (203)
|++|+||... .+++..+.+.+.+...+...+.+++++..
T Consensus 1 Mmkilii~~S~~~~~s~t~~la~~~~~~l~~~g~~~~v~~~dl 43 (201)
T 1t5b_A 1 MSKVLVLKSSILAGYSQSGQLTDYFIEQWREKHVADEITVRDL 43 (201)
T ss_dssp CCEEEEEECCSSGGGCHHHHHHHHHHHHHHHHCTTCEEEEEET
T ss_pred CCeEEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence 4578888644 26777777766543222212477877764
No 195
>1uz5_A MOEA protein, 402AA long hypothetical molybdopterin biosynthesis MOEA protein; MOEA molybdopterin, MOCF biosynthesis; 2.05A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2
Probab=76.82 E-value=6.2 Score=33.20 Aligned_cols=59 Identities=24% Similarity=0.235 Sum_probs=32.5
Q ss_pred chHHHHHHHHHHHhhhhhcCCceEEEEe--CCccc--HHHHhc--cCCCEEEECCCCCCCCCcchHHHHHHH
Q 037843 22 DSFTYNLCQYMGELELELSQGYHFEVYR--NDELT--VAELKR--KKPRGVVISPGPGAPQESGISFRTVLE 87 (203)
Q Consensus 22 ~~~~~~l~~~l~~~~~~~~~g~~~~v~~--~~~~~--~~~l~~--~~~dgiil~GG~~~~~~~~~~~~~i~~ 87 (203)
+++...+...+++. |+.+..+. .|+.. .+.+.. .++|.||.+||.+ +.+.+...+.+.+
T Consensus 206 DsN~~~L~~~l~~~------G~~v~~~~iv~Dd~~~i~~~l~~a~~~~DlVittGG~s-~g~~D~t~~al~~ 270 (402)
T 1uz5_A 206 DINGRALCDAINEL------GGEGIFMGVARDDKESLKALIEKAVNVGDVVVISGGAS-GGTKDLTASVIEE 270 (402)
T ss_dssp CCHHHHHHHHHHHH------TSEEEEEEEECSSHHHHHHHHHHHHHHCSEEEEECCC------CHHHHHHHH
T ss_pred cchHHHHHHHHHhC------CCeEEEEEEeCCCHHHHHHHHHHHhhCCCEEEEcCCCC-CCCcccHHHHHHh
Confidence 45677889999998 88765322 23211 112221 1579999999975 3444544455544
No 196
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=76.82 E-value=5.4 Score=29.42 Aligned_cols=79 Identities=10% Similarity=0.118 Sum_probs=42.8
Q ss_pred CCCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCccc-HHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHH
Q 037843 10 NDKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELT-VAELKRKKPRGVVISPGPGAPQESG-ISFRTVLE 87 (203)
Q Consensus 10 ~~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~-~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~ 87 (203)
..+.+|+|+|....+...+.+.++.. +++.+...-.+... .+.+....+|.||+--. .|...+ .+.+.+++
T Consensus 3 ~~~~~ilivdd~~~~~~~l~~~L~~~-----~~~~vv~~~~~~~~al~~~~~~~~dlvllD~~--lp~~~g~~~~~~lr~ 75 (215)
T 1a04_A 3 QEPATILLIDDHPMLRTGVKQLISMA-----PDITVVGEASNGEQGIELAESLDPDLILLDLN--MPGMNGLETLDKLRE 75 (215)
T ss_dssp -CCEEEEEECSCHHHHHHHHHHHTTC-----TTEEEEEEESSHHHHHHHHHHHCCSEEEEETT--STTSCHHHHHHHHHH
T ss_pred CCceEEEEECCCHHHHHHHHHHHhcC-----CCcEEEEEeCCHHHHHHHHHhcCCCEEEEeCC--CCCCcHHHHHHHHHH
Confidence 34678999998877777777777665 13555222222111 12223336899888221 122222 23455665
Q ss_pred hCCCCcee
Q 037843 88 LGPTMPLF 95 (203)
Q Consensus 88 ~~~~~Pil 95 (203)
.....|++
T Consensus 76 ~~~~~~ii 83 (215)
T 1a04_A 76 KSLSGRIV 83 (215)
T ss_dssp SCCCSEEE
T ss_pred hCCCCcEE
Confidence 55568887
No 197
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=75.81 E-value=16 Score=27.86 Aligned_cols=60 Identities=15% Similarity=0.239 Sum_probs=29.3
Q ss_pred CCCCCcEEEEeC--CchHHHHHHHHHHHhhhhhcCCceEEEEeCCccc------HHHHhccCCCEEEECC
Q 037843 9 KNDKNPIVVIDN--YDSFTYNLCQYMGELELELSQGYHFEVYRNDELT------VAELKRKKPRGVVISP 70 (203)
Q Consensus 9 ~~~~~~i~iid~--~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~------~~~l~~~~~dgiil~G 70 (203)
++...+|.+|-. .+.|...+.+.+++...+ .|+.+.+....... .+.+...++||||+.+
T Consensus 5 ~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~l~~~~~dgiIi~~ 72 (277)
T 3e61_A 5 KRKSKLIGLLLPDMSNPFFTLIARGVEDVALA--HGYQVLIGNSDNDIKKAQGYLATFVSHNCTGMISTA 72 (277)
T ss_dssp -----CEEEEESCTTSHHHHHHHHHHHHHHHH--TTCCEEEEECTTCHHHHHHHHHHHHHTTCSEEEECG
T ss_pred cCCCCEEEEEECCCCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEec
Confidence 344466777633 334444444444333211 18988877654211 1122334799999976
No 198
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=74.68 E-value=4.9 Score=28.02 Aligned_cols=51 Identities=10% Similarity=0.110 Sum_probs=29.4
Q ss_pred cEEEE-eCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccC-CCEEEE
Q 037843 14 PIVVI-DNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKK-PRGVVI 68 (203)
Q Consensus 14 ~i~ii-d~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~-~dgiil 68 (203)
+|+|+ ....+++..+++.+.+...+ .|++++++...+.+.+++. + +|.|||
T Consensus 2 ki~iiy~S~~Gnt~~~a~~i~~~l~~--~g~~v~~~~~~~~~~~~l~--~~~d~ii~ 54 (147)
T 1f4p_A 2 KALIVYGSTTGNTEYTAETIARELAD--AGYEVDSRDAASVEAGGLF--EGFDLVLL 54 (147)
T ss_dssp EEEEEEECSSSHHHHHHHHHHHHHHH--HTCEEEEEEGGGCCSTTTT--TTCSEEEE
T ss_pred eEEEEEECCcCHHHHHHHHHHHHHHh--cCCeeEEEehhhCCHHHhc--CcCCEEEE
Confidence 45555 34445677777666443211 1788887765433333443 5 799998
No 199
>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2
Probab=74.00 E-value=6.3 Score=28.37 Aligned_cols=53 Identities=6% Similarity=0.125 Sum_probs=29.5
Q ss_pred CCcEEEE-eCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEE
Q 037843 12 KNPIVVI-DNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVI 68 (203)
Q Consensus 12 ~~~i~ii-d~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil 68 (203)
|++|+|+ ....+++..+++.+.+...+. |+.+.+++.++.+..++. ++|.|||
T Consensus 9 ~~ki~I~Y~S~tGnT~~~A~~ia~~l~~~--g~~v~~~~~~~~~~~~l~--~~d~ii~ 62 (167)
T 1ykg_A 9 MPGITIISASQTGNARRVAEALRDDLLAA--KLNVKLVNAGDYKFKQIA--SEKLLIV 62 (167)
T ss_dssp ---CEEEEECSSSHHHHHHHHHHHHHHHH--TCCCEEEEGGGCCGGGGG--GCSEEEE
T ss_pred CCeEEEEEECCchHHHHHHHHHHHHHHHC--CCceEEeehhhCCHHHhc--cCCeEEE
Confidence 3455555 445567777777665432111 677777665434444554 5799888
No 200
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=73.67 E-value=12 Score=29.27 Aligned_cols=94 Identities=18% Similarity=0.164 Sum_probs=52.7
Q ss_pred CCCcEEEE----eCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHH----hccCCCEEEECCCCCCC-CCcchH
Q 037843 11 DKNPIVVI----DNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAEL----KRKKPRGVVISPGPGAP-QESGIS 81 (203)
Q Consensus 11 ~~~~i~ii----d~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l----~~~~~dgiil~GG~~~~-~~~~~~ 81 (203)
.+++|++. |.++--...+...|+.. |+++..+-.+ .+++++ ...++|.|.+|...... .....+
T Consensus 122 ~~~~vlla~~~gd~HdiG~~iva~~L~~~------G~~Vi~LG~~-vp~e~l~~~~~~~~~d~V~lS~l~~~~~~~~~~~ 194 (258)
T 2i2x_B 122 TKGTVVCHVAEGDVHDIGKNIVTALLRAN------GYNVVDLGRD-VPAEEVLAAVQKEKPIMLTGTALMTTTMYAFKEV 194 (258)
T ss_dssp CSCEEEEEECTTCCCCHHHHHHHHHHHHT------TCEEEEEEEE-CCSHHHHHHHHHHCCSEEEEECCCTTTTTHHHHH
T ss_pred CCCeEEEEeCCCCccHHHHHHHHHHHHHC------CCEEEECCCC-CCHHHHHHHHHHcCCCEEEEEeeccCCHHHHHHH
Confidence 35677776 44443345566778888 9999776543 344443 23489999998764321 111223
Q ss_pred HHHHHHhCCCCceeehhH---HHHHHHhCCeec
Q 037843 82 FRTVLELGPTMPLFCMGL---KCIGEALEGRLY 111 (203)
Q Consensus 82 ~~~i~~~~~~~PilClG~---Qlla~a~gg~v~ 111 (203)
.+.+++...++||++.|. +-++...|+...
T Consensus 195 i~~l~~~~~~~~v~vGG~~~~~~~~~~igad~~ 227 (258)
T 2i2x_B 195 NDMLLENGIKIPFACGGGAVNQDFVSQFALGVY 227 (258)
T ss_dssp HHHHHTTTCCCCEEEESTTCCHHHHHTSTTEEE
T ss_pred HHHHHhcCCCCcEEEECccCCHHHHHHcCCeEE
Confidence 444444444588884442 444555555443
No 201
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=73.27 E-value=11 Score=34.34 Aligned_cols=74 Identities=9% Similarity=0.050 Sum_probs=43.4
Q ss_pred cEEEEeCCc-hH-------HHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhcc-CCCEEEECCCCCCCC----Ccc-
Q 037843 14 PIVVIDNYD-SF-------TYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRK-KPRGVVISPGPGAPQ----ESG- 79 (203)
Q Consensus 14 ~i~iid~~~-~~-------~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~-~~dgiil~GG~~~~~----~~~- 79 (203)
+|+|||-.. .. ...+..+|++. |..+.....-..-...+... ++|.||+.= +.|. ..+
T Consensus 2 ~ILiVdDd~~~~~~~~~~~~~~L~~~L~~~------g~~v~~a~~g~~al~~~~~~~~~d~vilDi--~lp~~~~~~~G~ 73 (755)
T 2vyc_A 2 KVLIVESEFLHQDTWVGNAVERLADALSQQ------NVTVIKSTSFDDGFAILSSNEAIDCLMFSY--QMEHPDEHQNVR 73 (755)
T ss_dssp EEEEECCTTSTTSHHHHHHHHHHHHHHHHT------TCEEEEESSHHHHHHHHTTTCCCSEEEEEC--CCCSHHHHHHHH
T ss_pred eEEEEeCCccccccccHHHHHHHHHHHHhC------CCEEEEECCHHHHHHHHhcCCCCcEEEEeC--CCCcccccccHH
Confidence 799997664 44 55677777777 99877653211112223333 489999942 2232 111
Q ss_pred hHHHHHHHhCCCCcee
Q 037843 80 ISFRTVLELGPTMPLF 95 (203)
Q Consensus 80 ~~~~~i~~~~~~~Pil 95 (203)
.+.+.|++...++||+
T Consensus 74 ~ll~~iR~~~~~iPIi 89 (755)
T 2vyc_A 74 QLIGKLHERQQNVPVF 89 (755)
T ss_dssp HHHHHHHHHSTTCCEE
T ss_pred HHHHHHHHhCCCCCEE
Confidence 1456666666679998
No 202
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=72.97 E-value=8 Score=28.36 Aligned_cols=77 Identities=12% Similarity=0.070 Sum_probs=43.6
Q ss_pred CcEEEEeCC---chHHHHHHHHHHHhhhhhcCCceEEEEeCCccc------------------HHHHhccCCCEEEECCC
Q 037843 13 NPIVVIDNY---DSFTYNLCQYMGELELELSQGYHFEVYRNDELT------------------VAELKRKKPRGVVISPG 71 (203)
Q Consensus 13 ~~i~iid~~---~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~------------------~~~l~~~~~dgiil~GG 71 (203)
++|+||... .+++..+++++.+... .|.+++++...+.+ .+++. .+|+||| +.
T Consensus 7 Mkilii~gS~r~~g~t~~la~~i~~~l~---~g~~v~~~dl~~~p~~~~~~~~~~~~~~~~~~~~~l~--~aD~ii~-~s 80 (193)
T 1rtt_A 7 IKVLGISGSLRSGSYNSAALQEAIGLVP---PGMSIELADISGIPLYNEDVYALGFPPAVERFREQIR--AADALLF-AT 80 (193)
T ss_dssp CEEEEEESCCSTTCHHHHHHHHHHTTCC---TTCEEEECCCTTCCCCCHHHHTTCCCHHHHHHHHHHH--HCSEEEE-EC
T ss_pred ceEEEEECCCCCCChHHHHHHHHHHhcc---CCCeEEEEeHHHCCCCCccccccCCCHHHHHHHHHHH--hCCEEEE-Ec
Confidence 478888654 2678888887766422 27788776543211 12333 5799999 54
Q ss_pred CCCCCC-cchHHHHHHHh-------CCCCcee
Q 037843 72 PGAPQE-SGISFRTVLEL-------GPTMPLF 95 (203)
Q Consensus 72 ~~~~~~-~~~~~~~i~~~-------~~~~Pil 95 (203)
|--... .+.+..+|..+ -.++|+.
T Consensus 81 P~y~~~~p~~lK~~iD~~~~~~~~~l~gK~~~ 112 (193)
T 1rtt_A 81 PEYNYSMAGVLKNAIDWASRPPEQPFSGKPAA 112 (193)
T ss_dssp CEETTEECHHHHHHHHHHTCSSSCTTTTCEEE
T ss_pred cccccCcCHHHHHHHHHhccccCcccCCCeEE
Confidence 432222 22344555553 2467876
No 203
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=72.72 E-value=28 Score=26.41 Aligned_cols=59 Identities=17% Similarity=0.205 Sum_probs=31.9
Q ss_pred CCcEEEEe--CCchHHHHHHHHHHHhhhhhcCCceEEEEeCCccc------HHHHhccCCCEEEECCCC
Q 037843 12 KNPIVVID--NYDSFTYNLCQYMGELELELSQGYHFEVYRNDELT------VAELKRKKPRGVVISPGP 72 (203)
Q Consensus 12 ~~~i~iid--~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~------~~~l~~~~~dgiil~GG~ 72 (203)
..+|.+|- ..+.|...+.+.+++... ..|+.+.+...+... .+.+...++||||+.+..
T Consensus 7 s~~Igvi~~~~~~~~~~~~~~gi~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 73 (276)
T 3jy6_A 7 SKLIAVIVANIDDYFSTELFKGISSILE--SRGYIGVLFDANADIEREKTLLRAIGSRGFDGLILQSFS 73 (276)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHH--TTTCEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSC
T ss_pred CcEEEEEeCCCCchHHHHHHHHHHHHHH--HCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCC
Confidence 45676663 333454444444433321 129998887654211 122333479999997753
No 204
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=72.62 E-value=6.6 Score=29.09 Aligned_cols=37 Identities=14% Similarity=0.054 Sum_probs=23.1
Q ss_pred CCCcEEEEeCC---chHHHHHHHHHHHhhhhhcCCceEEEEeC
Q 037843 11 DKNPIVVIDNY---DSFTYNLCQYMGELELELSQGYHFEVYRN 50 (203)
Q Consensus 11 ~~~~i~iid~~---~~~~~~l~~~l~~~~~~~~~g~~~~v~~~ 50 (203)
||++|++|... .|++..+.+++.+... .|.+++++..
T Consensus 1 MM~kilii~gS~r~~s~t~~la~~~~~~~~---~~~~v~~~dl 40 (192)
T 3fvw_A 1 MSKRILFIVGSFSEGSFNRQLAKKAETIIG---DRAQVSYLSY 40 (192)
T ss_dssp --CEEEEEESCCSTTCHHHHHHHHHHHHHT---TSSEEEECCC
T ss_pred CCCEEEEEEcCCCCCCHHHHHHHHHHHhcC---CCCEEEEEeC
Confidence 36789999654 3677777777655421 2778877653
No 205
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=72.34 E-value=11 Score=28.62 Aligned_cols=94 Identities=11% Similarity=0.005 Sum_probs=54.4
Q ss_pred CCcEEEE----eCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHh----ccCCCEEEECCCCCCCCCcch---
Q 037843 12 KNPIVVI----DNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELK----RKKPRGVVISPGPGAPQESGI--- 80 (203)
Q Consensus 12 ~~~i~ii----d~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~----~~~~dgiil~GG~~~~~~~~~--- 80 (203)
+++|++- |.++--...+...|+.. |+++..+-.+ .+++++. ..++|.|.+||+.........
T Consensus 92 ~~~vll~~v~gd~HdiG~~iv~~~l~~~------G~~Vi~LG~~-vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~ 164 (215)
T 3ezx_A 92 AGLAITFVAEGDIHDIGHRLVTTMLGAN------GFQIVDLGVD-VLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKD 164 (215)
T ss_dssp CCEEEEEECTTCCCCHHHHHHHHHHHHT------SCEEEECCSS-CCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHH
T ss_pred CCeEEEEeCCCChhHHHHHHHHHHHHHC------CCeEEEcCCC-CCHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHH
Confidence 4666665 55543344566677888 9998776554 5555553 348999999665443322222
Q ss_pred HHHHHHHhC--CCCceeehhH---HHHHHHhCCeecc
Q 037843 81 SFRTVLELG--PTMPLFCMGL---KCIGEALEGRLYV 112 (203)
Q Consensus 81 ~~~~i~~~~--~~~PilClG~---Qlla~a~gg~v~~ 112 (203)
+.+.+++.. .++||++.|. |-.+...|+..+.
T Consensus 165 ~i~~l~~~~~~~~v~v~vGG~~~~~~~a~~iGad~~~ 201 (215)
T 3ezx_A 165 LMDRLNEEKLRDSVKCMFGGAPVSDKWIEEIGADATA 201 (215)
T ss_dssp HHHHHHHTTCGGGSEEEEESSSCCHHHHHHHTCCBCC
T ss_pred HHHHHHHcCCCCCCEEEEECCCCCHHHHHHhCCeEEE
Confidence 344445433 2688884333 3455566665543
No 206
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=72.23 E-value=30 Score=26.38 Aligned_cols=63 Identities=6% Similarity=0.160 Sum_probs=31.7
Q ss_pred cCCCCCcEEEEeC-------CchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccH------HHHhccCCCEEEECCCC
Q 037843 8 SKNDKNPIVVIDN-------YDSFTYNLCQYMGELELELSQGYHFEVYRNDELTV------AELKRKKPRGVVISPGP 72 (203)
Q Consensus 8 ~~~~~~~i~iid~-------~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~------~~l~~~~~dgiil~GG~ 72 (203)
.+....+|++|-. ...|...+.+.+++...+ .|+.+.+...+.... +.+...++||||+.+..
T Consensus 4 ~~~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~ 79 (292)
T 3k4h_A 4 ANQTTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHV--EGYALYMSTGETEEEIFNGVVKMVQGRQIGGIILLYSR 79 (292)
T ss_dssp ---CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHH--TTCEEEECCCCSHHHHHHHHHHHHHTTCCCEEEESCCB
T ss_pred ccCCCCEEEEEecCCccccccCHHHHHHHHHHHHHHHH--cCCEEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEeCCC
Confidence 3444567877733 334544444444332111 189887765432111 11223479999997753
No 207
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=72.13 E-value=2.8 Score=27.55 Aligned_cols=76 Identities=17% Similarity=0.292 Sum_probs=43.5
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCc-chHHHHHHHhCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQES-GISFRTVLELGP 90 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~-~~~~~~i~~~~~ 90 (203)
+.+|+|+|....+...+.+.++.. |..+............+....+|.+|+--. .+... -.+.+.+++...
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~------~~~v~~~~~~~~~~~~~~~~~~dlvi~d~~--~~~~~g~~~~~~l~~~~~ 74 (124)
T 1dc7_A 3 RGIVWVVDDDSSIRWVLERALAGA------GLTCTTFENGNEVLAALASKTPDVLLSDIR--MPGMDGLALLKQIKQRHP 74 (124)
T ss_dssp CCCCEEECSSSSHHHHHHHHHTTT------TCCCEECCCTTHHHHHSSSCCCSCEEECSC--SSHHHHCSTHHHHHHHCT
T ss_pred ccEEEEEeCCHHHHHHHHHHHHhC------CcEEEEeCCHHHHHHHHhcCCCCEEEEeee--cCCCCHHHHHHHHHhhCC
Confidence 357999998877778888888776 877654332111122233336888887221 11111 123455555545
Q ss_pred CCcee
Q 037843 91 TMPLF 95 (203)
Q Consensus 91 ~~Pil 95 (203)
..|++
T Consensus 75 ~~~ii 79 (124)
T 1dc7_A 75 MLPVI 79 (124)
T ss_dssp TSCCC
T ss_pred CCCEE
Confidence 67877
No 208
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=71.87 E-value=17 Score=28.29 Aligned_cols=57 Identities=9% Similarity=0.015 Sum_probs=29.9
Q ss_pred CCCCcEEEEe--CCchHHHHHH----HHHHHhhhhhcCCceEEEEeCCcccH------HHHhccCCCEEEECCCC
Q 037843 10 NDKNPIVVID--NYDSFTYNLC----QYMGELELELSQGYHFEVYRNDELTV------AELKRKKPRGVVISPGP 72 (203)
Q Consensus 10 ~~~~~i~iid--~~~~~~~~l~----~~l~~~~~~~~~g~~~~v~~~~~~~~------~~l~~~~~dgiil~GG~ 72 (203)
+....|.+|- ....|...+. +.+++. |+.+.+........ +.+...++||||+.+..
T Consensus 13 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~------g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 81 (303)
T 3kke_A 13 SRSGTIGLIVPDVNNAVFADMFSGVQMAASGH------STDVLLGQIDAPPRGTQQLSRLVSEGRVDGVLLQRRE 81 (303)
T ss_dssp ----CEEEEESCTTSTTHHHHHHHHHHHHHHT------TCCEEEEECCSTTHHHHHHHHHHHSCSSSEEEECCCT
T ss_pred CCCCEEEEEeCCCcChHHHHHHHHHHHHHHHC------CCEEEEEeCCCChHHHHHHHHHHHhCCCcEEEEecCC
Confidence 3345677663 3333434444 444444 99988776542111 22334479999997753
No 209
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=71.52 E-value=21 Score=27.57 Aligned_cols=53 Identities=13% Similarity=0.186 Sum_probs=29.9
Q ss_pred CcEEEEeCC--chHHHHHH----HHHHHhhhhhcCCceEEEEeCCcc-c-------HHHHhccCCCEEEECCC
Q 037843 13 NPIVVIDNY--DSFTYNLC----QYMGELELELSQGYHFEVYRNDEL-T-------VAELKRKKPRGVVISPG 71 (203)
Q Consensus 13 ~~i~iid~~--~~~~~~l~----~~l~~~~~~~~~g~~~~v~~~~~~-~-------~~~l~~~~~dgiil~GG 71 (203)
.+|.+|-.. ..|...+. +++++. |+.+.+...+.. + .+.+...++||||+.+.
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~------g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 70 (297)
T 3rot_A 4 DKYYLITHGSQDPYWTSLFQGAKKAAEEL------KVDLQILAPPGANDVPKQVQFIESALATYPSGIATTIP 70 (297)
T ss_dssp CEEEEECSCCCSHHHHHHHHHHHHHHHHH------TCEEEEECCSSSCCHHHHHHHHHHHHHTCCSEEEECCC
T ss_pred EEEEEEecCCCCchHHHHHHHHHHHHHHh------CcEEEEECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 567777333 34444444 444555 999887764311 2 12233347999999664
No 210
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=71.51 E-value=8.6 Score=27.79 Aligned_cols=82 Identities=16% Similarity=0.154 Sum_probs=47.4
Q ss_pred CCCcEEEE----eCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHh----ccCCCEEEECCCCCCC-CCcchH
Q 037843 11 DKNPIVVI----DNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELK----RKKPRGVVISPGPGAP-QESGIS 81 (203)
Q Consensus 11 ~~~~i~ii----d~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~----~~~~dgiil~GG~~~~-~~~~~~ 81 (203)
.+++|++- |.++--...+...|+.. |+++..+..+ .+++++. ..++|.|.+|...... .....+
T Consensus 17 ~~~~vlla~~~gd~HdiG~~~va~~l~~~------G~eVi~lG~~-~p~e~lv~aa~~~~~diV~lS~~~~~~~~~~~~~ 89 (161)
T 2yxb_A 17 RRYKVLVAKMGLDGHDRGAKVVARALRDA------GFEVVYTGLR-QTPEQVAMAAVQEDVDVIGVSILNGAHLHLMKRL 89 (161)
T ss_dssp CSCEEEEEEESSSSCCHHHHHHHHHHHHT------TCEEECCCSB-CCHHHHHHHHHHTTCSEEEEEESSSCHHHHHHHH
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHC------CCEEEECCCC-CCHHHHHHHHHhcCCCEEEEEeechhhHHHHHHH
Confidence 35677666 44443345566777887 9998766543 4555543 3489999997653311 011223
Q ss_pred HHHHHHhC-CCCceeehhH
Q 037843 82 FRTVLELG-PTMPLFCMGL 99 (203)
Q Consensus 82 ~~~i~~~~-~~~PilClG~ 99 (203)
.+.+++.. +++||++.|.
T Consensus 90 i~~L~~~g~~~i~v~vGG~ 108 (161)
T 2yxb_A 90 MAKLRELGADDIPVVLGGT 108 (161)
T ss_dssp HHHHHHTTCTTSCEEEEEC
T ss_pred HHHHHhcCCCCCEEEEeCC
Confidence 45555543 4688885563
No 211
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=71.38 E-value=6.2 Score=26.52 Aligned_cols=54 Identities=13% Similarity=0.017 Sum_probs=27.3
Q ss_pred CcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHH-HHhccCCCEEEECC
Q 037843 13 NPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVA-ELKRKKPRGVVISP 70 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~-~l~~~~~dgiil~G 70 (203)
++|+++-..+--++.+++.+++...+ .|+++++......... .+. ++|.|++++
T Consensus 4 kkIll~Cg~G~sTS~l~~k~~~~~~~--~gi~~~i~a~~~~~~~~~~~--~~Dvil~~p 58 (106)
T 1e2b_A 4 KHIYLFSSAGMSTSLLVSKMRAQAEK--YEVPVIIEAFPETLAGEKGQ--NADVVLLGP 58 (106)
T ss_dssp EEEEEECSSSTTTHHHHHHHHHHHHH--SCCSEEEEEECSSSTTHHHH--HCSEEEECT
T ss_pred cEEEEECCCchhHHHHHHHHHHHHHH--CCCCeEEEEecHHHHHhhcc--CCCEEEEcc
Confidence 46777644332344555545444222 1887776544322222 233 579888754
No 212
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=71.17 E-value=15 Score=28.92 Aligned_cols=81 Identities=14% Similarity=0.232 Sum_probs=49.8
Q ss_pred CCCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEE-EEeCCcccHHHHhccCCCEEEECCCCCCC-CCcc-hHHHHHH
Q 037843 10 NDKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFE-VYRNDELTVAELKRKKPRGVVISPGPGAP-QESG-ISFRTVL 86 (203)
Q Consensus 10 ~~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~-v~~~~~~~~~~l~~~~~dgiil~GG~~~~-~~~~-~~~~~i~ 86 (203)
....+|+|+|-...+...+...|+.. |+.+. ....-..-.+.+....||.||+== ..| .-.| .+.+.|+
T Consensus 158 ~l~~rILvVdD~~~~~~~l~~~L~~~------g~~v~~~a~~g~eAl~~~~~~~~dlvl~D~--~MPd~mdG~e~~~~ir 229 (286)
T 3n0r_A 158 ELATEVLIIEDEPVIAADIEALVREL------GHDVTDIAATRGEALEAVTRRTPGLVLADI--QLADGSSGIDAVKDIL 229 (286)
T ss_dssp SCCCEEEEECCSHHHHHHHHHHHHHT------TCEEEEEESSHHHHHHHHHHCCCSEEEEES--CCTTSCCTTTTTHHHH
T ss_pred cCCCcEEEEcCCHHHHHHHHHHhhcc------CceEEEEeCCHHHHHHHHHhCCCCEEEEcC--CCCCCCCHHHHHHHHH
Confidence 34568999988777778888899988 99886 443211112333344789888710 112 1122 2345666
Q ss_pred HhCCCCcee-ehhH
Q 037843 87 ELGPTMPLF-CMGL 99 (203)
Q Consensus 87 ~~~~~~Pil-ClG~ 99 (203)
+.. ++||+ .-|.
T Consensus 230 ~~~-~~piI~lT~~ 242 (286)
T 3n0r_A 230 GRM-DVPVIFITAF 242 (286)
T ss_dssp HHT-TCCEEEEESC
T ss_pred hcC-CCCEEEEeCC
Confidence 655 89999 6554
No 213
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=71.15 E-value=33 Score=26.32 Aligned_cols=61 Identities=16% Similarity=0.023 Sum_probs=29.7
Q ss_pred CCCCCcEEEEe--CCchHHHHHHHHHHHhhhhhcCCceEEEEeCCc-cc--------HHHHhccCCCEEEECCC
Q 037843 9 KNDKNPIVVID--NYDSFTYNLCQYMGELELELSQGYHFEVYRNDE-LT--------VAELKRKKPRGVVISPG 71 (203)
Q Consensus 9 ~~~~~~i~iid--~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~-~~--------~~~l~~~~~dgiil~GG 71 (203)
.+...+|.+|- ..+.|...+.+.+++... ..|+.+.+...+. .. .+.+...++||||+.+.
T Consensus 5 ~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~--~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 76 (290)
T 2rgy_A 5 TQQLGIIGLFVPTFFGSYYGTILKQTDLELR--AVHRHVVVATGCGESTPREQALEAVRFLIGRDCDGVVVISH 76 (290)
T ss_dssp ---CCEEEEECSCSCSHHHHHHHHHHHHHHH--HTTCEEEEECCCSSSCHHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred cCCCCeEEEEeCCCCCchHHHHHHHHHHHHH--HCCCEEEEEeCCCchhhhhhHHHHHHHHHhcCccEEEEecC
Confidence 33346777773 333444444443333211 1188887765431 11 12222347999999764
No 214
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=70.73 E-value=12 Score=29.01 Aligned_cols=81 Identities=20% Similarity=0.171 Sum_probs=43.9
Q ss_pred CCcEEEEeCC---chHHHHHHHHHHHhhhhhcCCceEEEEeCCccc-----------HHHHhc--cCCCEEEECCCCCCC
Q 037843 12 KNPIVVIDNY---DSFTYNLCQYMGELELELSQGYHFEVYRNDELT-----------VAELKR--KKPRGVVISPGPGAP 75 (203)
Q Consensus 12 ~~~i~iid~~---~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~-----------~~~l~~--~~~dgiil~GG~~~~ 75 (203)
+++|++|... .+++..+.+++.+..++ .|++++++...+.+ ..++.. ...|+||| +.|---
T Consensus 34 ~mkIliI~GS~r~~s~t~~La~~~~~~l~~--~g~eve~idL~~~pl~~~d~~~~d~~~~l~~~i~~AD~iI~-~sP~Yn 110 (247)
T 2q62_A 34 RPRILILYGSLRTVSYSRLLAEEARRLLEF--FGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSEGQVW-VSPERH 110 (247)
T ss_dssp CCEEEEEECCCCSSCHHHHHHHHHHHHHHH--TTCEEEECCCTTCCCTTSSCTTSHHHHHHHHHHHHCSEEEE-EEECSS
T ss_pred CCeEEEEEccCCCCCHHHHHHHHHHHHHhh--CCCEEEEEEhhcCCCCcCCCCCCHHHHHHHHHHHHCCEEEE-EeCCCC
Confidence 5689888643 36777777766543221 28888887643322 122211 15799999 444322
Q ss_pred CC-cchHHHHHHHhC---------CCCcee
Q 037843 76 QE-SGISFRTVLELG---------PTMPLF 95 (203)
Q Consensus 76 ~~-~~~~~~~i~~~~---------~~~Pil 95 (203)
.. .+.+..+|..+. .++|+.
T Consensus 111 ~sipa~LKn~iD~l~~~~~~~~~l~gK~v~ 140 (247)
T 2q62_A 111 GAMTGIMKAQIDWIPLSTGSIRPTQGKTLA 140 (247)
T ss_dssp SSCCHHHHHHHHTSCSCBTTBCSSTTCEEE
T ss_pred CCccHHHHHHHHHhhhccCcccccCCCEEE
Confidence 22 233445555431 367776
No 215
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=70.35 E-value=31 Score=26.59 Aligned_cols=54 Identities=15% Similarity=0.151 Sum_probs=28.6
Q ss_pred CCcEEEEe--CCchHHHHHH----HHHHHhhhhhcCCceEEEEeCCcccH-------HHHhccCCCEEEECCC
Q 037843 12 KNPIVVID--NYDSFTYNLC----QYMGELELELSQGYHFEVYRNDELTV-------AELKRKKPRGVVISPG 71 (203)
Q Consensus 12 ~~~i~iid--~~~~~~~~l~----~~l~~~~~~~~~g~~~~v~~~~~~~~-------~~l~~~~~dgiil~GG 71 (203)
+.+|++|- ....|...+. +++++. |+.+.++.....+. +.+...++||||+.+.
T Consensus 4 ~~~I~~i~~~~~~~~~~~~~~gi~~~a~~~------g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 70 (305)
T 3g1w_A 4 NETYMMITFQSGMDYWKRCLKGFEDAAQAL------NVTVEYRGAAQYDIQEQITVLEQAIAKNPAGIAISAI 70 (305)
T ss_dssp -CEEEEEESSTTSTHHHHHHHHHHHHHHHH------TCEEEEEECSSSCHHHHHHHHHHHHHHCCSEEEECCS
T ss_pred CceEEEEEccCCChHHHHHHHHHHHHHHHc------CCEEEEeCCCcCCHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 35676663 3334444444 444555 99988743211222 2222347999999765
No 216
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=70.29 E-value=8.7 Score=25.72 Aligned_cols=31 Identities=13% Similarity=0.090 Sum_probs=24.4
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEE
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVY 48 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~ 48 (203)
+.+|+|+|....+...+.+.++.. |..+...
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~------g~~v~~~ 37 (136)
T 1dcf_A 7 GLKVLVMDENGVSRMVTKGLLVHL------GCEVTTV 37 (136)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHHT------TCEEEEE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc------CCeEEEe
Confidence 478999998877777788888887 8876543
No 217
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=70.03 E-value=22 Score=27.63 Aligned_cols=52 Identities=13% Similarity=-0.057 Sum_probs=29.2
Q ss_pred CcEEEEe--CCchHHHH----HHHHHHHhhhhhcCCceEEEEeCCcccH-------HHHhccCCCEEEECCC
Q 037843 13 NPIVVID--NYDSFTYN----LCQYMGELELELSQGYHFEVYRNDELTV-------AELKRKKPRGVVISPG 71 (203)
Q Consensus 13 ~~i~iid--~~~~~~~~----l~~~l~~~~~~~~~g~~~~v~~~~~~~~-------~~l~~~~~dgiil~GG 71 (203)
.+|.+|- ....|... +.+++++. |+.+.+.... .+. +.+...++||||+.+.
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~------g~~~~~~~~~-~~~~~~~~~i~~l~~~~vdgiIi~~~ 67 (313)
T 3m9w_A 3 VKIGMAIDDLRLERWQKDRDIFVKKAESL------GAKVFVQSAN-GNEETQMSQIENMINRGVDVLVIIPY 67 (313)
T ss_dssp CEEEEEESCCSSSTTHHHHHHHHHHHHHT------SCEEEEEECT-TCHHHHHHHHHHHHHTTCSEEEEECS
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHHc------CCEEEEECCC-CCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 4566663 22334333 44455555 9998887653 222 1223347999999765
No 218
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=69.50 E-value=14 Score=25.72 Aligned_cols=80 Identities=15% Similarity=0.044 Sum_probs=46.5
Q ss_pred CcEEEE----eCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHh----ccCCCEEEECCCCCCCC-CcchHHH
Q 037843 13 NPIVVI----DNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELK----RKKPRGVVISPGPGAPQ-ESGISFR 83 (203)
Q Consensus 13 ~~i~ii----d~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~----~~~~dgiil~GG~~~~~-~~~~~~~ 83 (203)
++|++- |.++--...+...|+.. |+++..+-.+ .+++++. ..++|.|.+|...+... ....+.+
T Consensus 4 ~~vvla~~~~d~HdiG~~~v~~~l~~~------G~~Vi~lG~~-~p~e~~v~~a~~~~~d~v~lS~~~~~~~~~~~~~i~ 76 (137)
T 1ccw_A 4 KTIVLGVIGSDCHAVGNKILDHAFTNA------GFNVVNIGVL-SPQELFIKAAIETKADAILVSSLYGQGEIDCKGLRQ 76 (137)
T ss_dssp CEEEEEEETTCCCCHHHHHHHHHHHHT------TCEEEEEEEE-ECHHHHHHHHHHHTCSEEEEEECSSTHHHHHTTHHH
T ss_pred CEEEEEeCCCchhHHHHHHHHHHHHHC------CCEEEECCCC-CCHHHHHHHHHhcCCCEEEEEecCcCcHHHHHHHHH
Confidence 555554 44443344566677887 9998866443 4555543 23799999977653211 1233455
Q ss_pred HHHHhC-CCCceeehhH
Q 037843 84 TVLELG-PTMPLFCMGL 99 (203)
Q Consensus 84 ~i~~~~-~~~PilClG~ 99 (203)
.+++.. +++|+++-|.
T Consensus 77 ~l~~~g~~~i~v~vGG~ 93 (137)
T 1ccw_A 77 KCDEAGLEGILLYVGGN 93 (137)
T ss_dssp HHHHTTCTTCEEEEEES
T ss_pred HHHhcCCCCCEEEEECC
Confidence 666643 3578885564
No 219
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=69.47 E-value=11 Score=27.90 Aligned_cols=37 Identities=11% Similarity=-0.013 Sum_probs=18.4
Q ss_pred CCCEEEECCCCCCCC-CcchHHHHHHHhC-CCCcee-ehh
Q 037843 62 KPRGVVISPGPGAPQ-ESGISFRTVLELG-PTMPLF-CMG 98 (203)
Q Consensus 62 ~~dgiil~GG~~~~~-~~~~~~~~i~~~~-~~~Pil-ClG 98 (203)
++|.||++|=-.+.. ......+.++.+. .++|++ +.|
T Consensus 32 ~~D~vi~~GDl~~~~~~~~~~~~~~~~l~~~~~pv~~v~G 71 (228)
T 1uf3_A 32 GADAIALIGNLMPKAAKSRDYAAFFRILSEAHLPTAYVPG 71 (228)
T ss_dssp TCSEEEEESCSSCTTCCHHHHHHHHHHHGGGCSCEEEECC
T ss_pred CCCEEEECCCCCCCCCCHHHHHHHHHHHHhcCCcEEEECC
Confidence 578888877433222 1111223344432 247887 555
No 220
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=69.46 E-value=15 Score=28.40 Aligned_cols=59 Identities=12% Similarity=0.143 Sum_probs=30.0
Q ss_pred CCcEEEE-eCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCc-ccH----HHHhccCCCEEEECCCC
Q 037843 12 KNPIVVI-DNYDSFTYNLCQYMGELELELSQGYHFEVYRNDE-LTV----AELKRKKPRGVVISPGP 72 (203)
Q Consensus 12 ~~~i~ii-d~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~-~~~----~~l~~~~~dgiil~GG~ 72 (203)
..+|.+| +....|...+.+.+++...+ .|+.+.+...+. ... +.+...++||||+.+..
T Consensus 12 ~~~Igvi~~~~~~~~~~~~~gi~~~a~~--~g~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 76 (289)
T 3k9c_A 12 SRLLGVVFELQQPFHGDLVEQIYAAATR--RGYDVMLSAVAPSRAEKVAVQALMRERCEAAILLGTR 76 (289)
T ss_dssp -CEEEEEEETTCHHHHHHHHHHHHHHHH--TTCEEEEEEEBTTBCHHHHHHHHTTTTEEEEEEETCC
T ss_pred CCEEEEEEecCCchHHHHHHHHHHHHHH--CCCEEEEEeCCCCHHHHHHHHHHHhCCCCEEEEECCC
Confidence 3456444 55445544444444333111 189888765431 111 22333478999997753
No 221
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=69.37 E-value=7 Score=29.24 Aligned_cols=76 Identities=14% Similarity=0.206 Sum_probs=42.8
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCC-ceEEEEeCCcc-cHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHh
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQG-YHFEVYRNDEL-TVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLEL 88 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g-~~~~v~~~~~~-~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~ 88 (203)
|.+|+|+|....+...+.+.|+.. | +.+...-.+.. ..+.+....+|.||+--. .+...+ .+.+.+++.
T Consensus 1 m~~ILivdd~~~~~~~l~~~L~~~------~~~~vv~~~~~~~~al~~l~~~~~dlvllD~~--lp~~~g~~~~~~lr~~ 72 (225)
T 3c3w_A 1 MVKVFLVDDHEVVRRGLVDLLGAD------PELDVVGEAGSVAEAMARVPAARPDVAVLDVR--LPDGNGIELCRDLLSR 72 (225)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTC------TTEEEEEEESSHHHHHHHHHHHCCSEEEECSE--ETTEEHHHHHHHHHHH
T ss_pred CcEEEEEcCCHHHHHHHHHHHhcC------CCcEEEEEECCHHHHHHHHhhcCCCEEEEeCC--CCCCCHHHHHHHHHHh
Confidence 468999998877777788888776 5 65432222211 112233336899988211 121122 234555555
Q ss_pred CCCCcee
Q 037843 89 GPTMPLF 95 (203)
Q Consensus 89 ~~~~Pil 95 (203)
....||+
T Consensus 73 ~~~~~ii 79 (225)
T 3c3w_A 73 MPDLRCL 79 (225)
T ss_dssp CTTCEEE
T ss_pred CCCCcEE
Confidence 5678988
No 222
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=69.12 E-value=20 Score=27.57 Aligned_cols=55 Identities=13% Similarity=0.100 Sum_probs=30.8
Q ss_pred CCcEEEEe--CCchHHHHHH----HHHHHhhhhhcCCceEEEEeCCc-ccH-------HHHhccCCCEEEECCCC
Q 037843 12 KNPIVVID--NYDSFTYNLC----QYMGELELELSQGYHFEVYRNDE-LTV-------AELKRKKPRGVVISPGP 72 (203)
Q Consensus 12 ~~~i~iid--~~~~~~~~l~----~~l~~~~~~~~~g~~~~v~~~~~-~~~-------~~l~~~~~dgiil~GG~ 72 (203)
..+|.+|- ..+.|...+. +++++. |+.+.+...+. .+. +.+...++||||+.+..
T Consensus 5 ~~~Igvi~~~~~~~~~~~~~~g~~~~a~~~------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~ 73 (304)
T 3o1i_D 5 DEKICAIYPHLKDSYWLSVNYGMVSEAEKQ------GVNLRVLEAGGYPNKSRQEQQLALCTQWGANAIILGTVD 73 (304)
T ss_dssp CCEEEEEESCSCSHHHHHHHHHHHHHHHHH------TCEEEEEECSSTTCHHHHHHHHHHHHHHTCSEEEECCSS
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHHc------CCeEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 45676663 3334444444 444455 99988876542 021 12223479999997643
No 223
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=68.80 E-value=9.5 Score=25.36 Aligned_cols=76 Identities=13% Similarity=0.196 Sum_probs=42.4
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCce-EEEEeCCcccHHHHhcc-CCCEEEECCCCCCCCCcc-hHHHHHHHh
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYH-FEVYRNDELTVAELKRK-KPRGVVISPGPGAPQESG-ISFRTVLEL 88 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~-~~v~~~~~~~~~~l~~~-~~dgiil~GG~~~~~~~~-~~~~~i~~~ 88 (203)
+.+|+|+|....+...+.+.|+.. |.. +............+... .+|.||+-= ..|...+ .+.+.+++.
T Consensus 5 ~~~iLivdd~~~~~~~l~~~L~~~------g~~~v~~~~~~~~a~~~~~~~~~~dlvi~D~--~~p~~~g~~~~~~lr~~ 76 (129)
T 3h1g_A 5 SMKLLVVDDSSTMRRIIKNTLSRL------GYEDVLEAEHGVEAWEKLDANADTKVLITDW--NMPEMNGLDLVKKVRSD 76 (129)
T ss_dssp -CCEEEECSCHHHHHHHHHHHHHT------TCCCEEEESSHHHHHHHHHHCTTCCEEEECS--CCSSSCHHHHHHHHHTS
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHc------CCcEEEEeCCHHHHHHHHHhCCCCCEEEEeC--CCCCCCHHHHHHHHHhc
Confidence 468999998877778888889888 875 43322111111223222 578888721 1222222 234555542
Q ss_pred --CCCCcee
Q 037843 89 --GPTMPLF 95 (203)
Q Consensus 89 --~~~~Pil 95 (203)
....|++
T Consensus 77 ~~~~~~pii 85 (129)
T 3h1g_A 77 SRFKEIPII 85 (129)
T ss_dssp TTCTTCCEE
T ss_pred CCCCCCeEE
Confidence 2468988
No 224
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=68.14 E-value=13 Score=29.69 Aligned_cols=62 Identities=11% Similarity=0.135 Sum_probs=34.6
Q ss_pred ccCCCCCcEEEEeCC-ch------HHHHHHHHHHHhhhhhcCCceEEEEeCCcc-cHHHHh---ccCCCEEEECCCCCC
Q 037843 7 LSKNDKNPIVVIDNY-DS------FTYNLCQYMGELELELSQGYHFEVYRNDEL-TVAELK---RKKPRGVVISPGPGA 74 (203)
Q Consensus 7 ~~~~~~~~i~iid~~-~~------~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~-~~~~l~---~~~~dgiil~GG~~~ 74 (203)
++++.|++++||-|- ++ ....+.++|++. |.+++++..... ...++. ..++|.||+.||.|.
T Consensus 3 m~~~~m~~~~vi~Np~sG~~~~~~~~~~i~~~l~~~------~~~~~~~~t~~~~~a~~~~~~~~~~~d~vv~~GGDGT 75 (304)
T 3s40_A 3 MTKTKFEKVLLIVNPKAGQGDLHTNLTKIVPPLAAA------FPDLHILHTKEQGDATKYCQEFASKVDLIIVFGGDGT 75 (304)
T ss_dssp --CCSCSSEEEEECTTCSSSCHHHHHHHHHHHHHHH------CSEEEEEECCSTTHHHHHHHHHTTTCSEEEEEECHHH
T ss_pred CccCCCCEEEEEECcccCCCchHHHHHHHHHHHHHc------CCeEEEEEccCcchHHHHHHHhhcCCCEEEEEccchH
Confidence 334557788776443 21 122355566666 888887654322 121221 127899999999654
No 225
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=68.10 E-value=11 Score=25.23 Aligned_cols=76 Identities=16% Similarity=0.256 Sum_probs=42.8
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCce-EEEEeCCcccHHHHhc-----cCCCEEEECCCCCCCCCcc-hHHHH
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYH-FEVYRNDELTVAELKR-----KKPRGVVISPGPGAPQESG-ISFRT 84 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~-~~v~~~~~~~~~~l~~-----~~~dgiil~GG~~~~~~~~-~~~~~ 84 (203)
+.+|+|+|....+...+.+.|+.. |.. +..........+.+.. ..+|.|++-= ..|...+ .+.+.
T Consensus 2 ~~~ILivdD~~~~~~~l~~~L~~~------g~~~v~~~~~~~~al~~~~~~~~~~~~~dlvllD~--~mp~~~G~~~~~~ 73 (133)
T 2r25_B 2 SVKILVVEDNHVNQEVIKRMLNLE------GIENIELACDGQEAFDKVKELTSKGENYNMIFMDV--QMPKVDGLLSTKM 73 (133)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT------TCCCEEEESSHHHHHHHHHHHHHHTCCCSEEEECS--CCSSSCHHHHHHH
T ss_pred CceEEEEcCCHHHHHHHHHHHHHc------CCceEEEECCHHHHHHHHHHHHhcCCCCCEEEEeC--CCCCCChHHHHHH
Confidence 467999998877778888888877 764 4333211111122222 3689888721 1222223 23455
Q ss_pred HHH-hCCCCcee
Q 037843 85 VLE-LGPTMPLF 95 (203)
Q Consensus 85 i~~-~~~~~Pil 95 (203)
+++ .....||+
T Consensus 74 lr~~~~~~~~ii 85 (133)
T 2r25_B 74 IRRDLGYTSPIV 85 (133)
T ss_dssp HHHHSCCCSCEE
T ss_pred HHhhcCCCCCEE
Confidence 665 34467888
No 226
>1t0b_A THUA-like protein; trehalose metabolism, NCS symmetry, structural genomics, PSI, protein structure initiative; 1.70A {Geobacillus stearothermophilus} SCOP: c.23.16.6
Probab=68.01 E-value=40 Score=26.13 Aligned_cols=106 Identities=14% Similarity=0.070 Sum_probs=55.6
Q ss_pred HHHHHHHhhhhhcCCceEEEEeCCc----ccHHHHhccCCCEEEECCCC-CCCCCcchHHHHHHH-hCCCCcee---e-h
Q 037843 28 LCQYMGELELELSQGYHFEVYRNDE----LTVAELKRKKPRGVVISPGP-GAPQESGISFRTVLE-LGPTMPLF---C-M 97 (203)
Q Consensus 28 l~~~l~~~~~~~~~g~~~~v~~~~~----~~~~~l~~~~~dgiil~GG~-~~~~~~~~~~~~i~~-~~~~~Pil---C-l 97 (203)
+.+.|+.. |+.|++...++ .+.+.+. ++|.||+.|.. +.. ......+.+++ +.++.+++ | .
T Consensus 37 i~~~L~~~------gf~V~~~t~dd~~~~~~~~~L~--~~DvvV~~~~~~~~~-l~~~~~~al~~~V~~GgG~vgiH~a~ 107 (252)
T 1t0b_A 37 IASYLAEA------GFDAATAVLDEPEHGLTDEVLD--RCDVLVWWGHIAHDE-VKDEVVERVHRRVLEGMGLIVLHSGH 107 (252)
T ss_dssp HHHHHHHT------TCEEEEEESSSGGGGCCHHHHH--TCSEEEEECSSCGGG-SCHHHHHHHHHHHHTTCEEEEEGGGG
T ss_pred HHHHHhhC------CcEEEEEeccCccccCCHhHHh--cCCEEEEecCCCCCc-CCHHHHHHHHHHHHcCCCEEEEcccC
Confidence 34555555 89988765322 2344455 68999994321 111 12223344444 46678888 2 2
Q ss_pred hHHHHHHHhCCeeccccccccccc-eeEEEcccccccccccCCCCceEEe
Q 037843 98 GLKCIGEALEGRLYVLLLVSCMGK-ALVYYNEKEEADGLLAGLSNPFTAG 146 (203)
Q Consensus 98 G~Qlla~a~gg~v~~~~~~~~~g~-~~i~~~~~~~~~~lf~~~~~~~~~~ 146 (203)
..+-....+|+.-. .+. ...+. ..+.. ....+++.++++..+.+.
T Consensus 108 ~~~~y~~llGg~f~-~~~-~~~~~~~~v~v--~~~~HPit~gl~~~f~~~ 153 (252)
T 1t0b_A 108 FSKIFKKLMGTTCN-LKW-READEKERLWV--VAPGHPIVEGIGPYIELE 153 (252)
T ss_dssp GSHHHHHHHCSCCC-CEE-EEEEEEEEEEE--SCTTSGGGTTCCSEEEEE
T ss_pred CcHHHHhhhCCccc-CCC-ccCCceEEEEE--CCCCChhhcCCCCCcEec
Confidence 23445667777632 110 00122 22333 233589999998666554
No 227
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=67.94 E-value=37 Score=26.76 Aligned_cols=54 Identities=13% Similarity=0.227 Sum_probs=29.0
Q ss_pred CCcEEEEe--CCchHHH----HHHHHHHHhhhhhcCCceEEEEeCCccc------HHHHhccCCCEEEECCC
Q 037843 12 KNPIVVID--NYDSFTY----NLCQYMGELELELSQGYHFEVYRNDELT------VAELKRKKPRGVVISPG 71 (203)
Q Consensus 12 ~~~i~iid--~~~~~~~----~l~~~l~~~~~~~~~g~~~~v~~~~~~~------~~~l~~~~~dgiil~GG 71 (203)
...|.+|- ....|.. .+.+.+++. |+.+.+...+... .+.+...++||||+.+.
T Consensus 62 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~------g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~ 127 (339)
T 3h5o_A 62 SRTVLVLIPSLANTVFLETLTGIETVLDAA------GYQMLIGNSHYDAGQELQLLRAYLQHRPDGVLITGL 127 (339)
T ss_dssp -CEEEEEESCSTTCTTHHHHHHHHHHHHHT------TCEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHHHHC------CCEEEEEeCCCChHHHHHHHHHHHcCCCCEEEEeCC
Confidence 35676663 2222333 344455555 9998876643111 12223347999999774
No 228
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=67.78 E-value=16 Score=30.18 Aligned_cols=74 Identities=19% Similarity=0.226 Sum_probs=44.8
Q ss_pred cEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCCCC
Q 037843 14 PIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELGPTM 92 (203)
Q Consensus 14 ~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~~~~ 92 (203)
+|+|||....+...+.+.++.. |+.+........-.+.+....+|.||+-= ..|...+ .+.+.+++....+
T Consensus 2 ~ILIVDDd~~~~~~l~~~L~~~------g~~v~~a~~~~eal~~l~~~~~DlvllD~--~mp~~dG~ell~~lr~~~~~~ 73 (387)
T 1ny5_A 2 NVLVIEDDKVFRGLLEEYLSMK------GIKVESAERGKEAYKLLSEKHFNVVLLDL--LLPDVNGLEILKWIKERSPET 73 (387)
T ss_dssp EEEEECCCHHHHHHHHHHHHHH------TCEEEEESSHHHHHHHHHHSCCSEEEEES--BCSSSBHHHHHHHHHHHCTTS
T ss_pred EEEEEECCHHHHHHHHHHHHHC------CCEEEEECCHHHHHHHHHhCCCCEEEEeC--CCCCCCHHHHHHHHHhhCCCC
Confidence 6999998887888888888887 88876543211112223334689888721 1122222 2345566555678
Q ss_pred cee
Q 037843 93 PLF 95 (203)
Q Consensus 93 Pil 95 (203)
|++
T Consensus 74 pvI 76 (387)
T 1ny5_A 74 EVI 76 (387)
T ss_dssp EEE
T ss_pred cEE
Confidence 887
No 229
>2fts_A Gephyrin; gephyrin, neuroreceptor anchoring, structu protein; 2.41A {Rattus norvegicus} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 2fu3_A 1t3e_A
Probab=67.74 E-value=4.9 Score=33.99 Aligned_cols=57 Identities=19% Similarity=0.177 Sum_probs=33.2
Q ss_pred chHHHHHHHHHHHhhhhhcCCceEEEEe--CCccc--HHHHhc--cCCCEEEECCCCCCCCCcchHHHHH
Q 037843 22 DSFTYNLCQYMGELELELSQGYHFEVYR--NDELT--VAELKR--KKPRGVVISPGPGAPQESGISFRTV 85 (203)
Q Consensus 22 ~~~~~~l~~~l~~~~~~~~~g~~~~v~~--~~~~~--~~~l~~--~~~dgiil~GG~~~~~~~~~~~~~i 85 (203)
+++...+..+++++ |+.+..+. .|+.. .+.+.. .++|.||.+||.+ +.+.+...+.+
T Consensus 207 dsN~~~L~~~l~~~------G~~v~~~~iv~Dd~~~i~~~l~~a~~~~DlVittGG~s-~g~~D~t~~al 269 (419)
T 2fts_A 207 DSNRSTLLATIQEH------GYPTINLGIVGDNPDDLLNALNEGISRADVIITSGGVS-MGEKDYLKQVL 269 (419)
T ss_dssp CCHHHHHHHHHHTT------TCCEEEEEEECSSHHHHHHHHHHHHHHCSEEEEESCCS-SSCCHHHHHHH
T ss_pred cCchHHHHHHHHHC------CCEEEEEeecCCCHHHHHHHHHHHHhcCCEEEEcCCCc-CCCcccHHHHH
Confidence 45677888999998 88764321 23211 112221 1579999999865 44444444555
No 230
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=67.31 E-value=28 Score=28.01 Aligned_cols=84 Identities=14% Similarity=0.124 Sum_probs=45.2
Q ss_pred CCcEEEEeC-Cch------HHHHHHHHHHHhhhhhcCCceEEEEeCCcc-cHHH----HhccCCCEEEECCCCCCCCCcc
Q 037843 12 KNPIVVIDN-YDS------FTYNLCQYMGELELELSQGYHFEVYRNDEL-TVAE----LKRKKPRGVVISPGPGAPQESG 79 (203)
Q Consensus 12 ~~~i~iid~-~~~------~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~-~~~~----l~~~~~dgiil~GG~~~~~~~~ 79 (203)
|++++||-| .++ ....+.++|++. |+++.+...... ...+ .....+|.||+.||.|.
T Consensus 24 m~~i~vI~NP~sg~~~~~~~~~~i~~~L~~~------g~~~~~~~t~~~~~a~~~~~~~~~~~~d~vvv~GGDGT----- 92 (337)
T 2qv7_A 24 RKRARIIYNPTSGKEQFKRELPDALIKLEKA------GYETSAYATEKIGDATLEAERAMHENYDVLIAAGGDGT----- 92 (337)
T ss_dssp CEEEEEEECTTSTTSCHHHHHHHHHHHHHHT------TEEEEEEECCSTTHHHHHHHHHTTTTCSEEEEEECHHH-----
T ss_pred cceEEEEECCCCCCCchHHHHHHHHHHHHHc------CCeEEEEEecCcchHHHHHHHHhhcCCCEEEEEcCchH-----
Confidence 456777644 322 123455666666 888877654321 1112 22236899999999654
Q ss_pred hHHHHHHHh---CCCCcee---ehhHHHHHHHhC
Q 037843 80 ISFRTVLEL---GPTMPLF---CMGLKCIGEALE 107 (203)
Q Consensus 80 ~~~~~i~~~---~~~~Pil---ClG~Qlla~a~g 107 (203)
+.+.+..+ ..++|+. +-=.=.+|..+|
T Consensus 93 -v~~v~~~l~~~~~~~pl~iIP~GT~N~lAr~Lg 125 (337)
T 2qv7_A 93 -LNEVVNGIAEKPNRPKLGVIPMGTVNDFGRALH 125 (337)
T ss_dssp -HHHHHHHHTTCSSCCEEEEEECSSCCHHHHHTT
T ss_pred -HHHHHHHHHhCCCCCcEEEecCCcHhHHHHHcC
Confidence 33444443 3567876 433344455544
No 231
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=66.91 E-value=13 Score=27.53 Aligned_cols=37 Identities=11% Similarity=0.114 Sum_probs=22.7
Q ss_pred CCcEEEEeCC-chHHHHHHHHHHHhhhhhcCCceEEEEeC
Q 037843 12 KNPIVVIDNY-DSFTYNLCQYMGELELELSQGYHFEVYRN 50 (203)
Q Consensus 12 ~~~i~iid~~-~~~~~~l~~~l~~~~~~~~~g~~~~v~~~ 50 (203)
|++|+||-.- .+++..+++.+.+...+ .|++++++..
T Consensus 6 mmkilii~~S~~g~T~~la~~i~~~l~~--~g~~v~~~~l 43 (211)
T 1ydg_A 6 PVKLAIVFYSSTGTGYAMAQEAAEAGRA--AGAEVRLLKV 43 (211)
T ss_dssp CCEEEEEECCSSSHHHHHHHHHHHHHHH--TTCEEEEEEC
T ss_pred CCeEEEEEECCCChHHHHHHHHHHHHhc--CCCEEEEEec
Confidence 5678888532 46677777666443211 2788887764
No 232
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=66.77 E-value=36 Score=26.50 Aligned_cols=57 Identities=14% Similarity=0.087 Sum_probs=29.7
Q ss_pred CCcEEEEe--CCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccH-------HHHhccCCCEEEECCC
Q 037843 12 KNPIVVID--NYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTV-------AELKRKKPRGVVISPG 71 (203)
Q Consensus 12 ~~~i~iid--~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~-------~~l~~~~~dgiil~GG 71 (203)
+.+|.+|- ....|...+.+.+++...+ .|+.+.+...+ .+. +.+...++||||+.+.
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~--~g~~~~~~~~~-~~~~~~~~~i~~~~~~~vdgiIi~~~ 68 (330)
T 3uug_A 3 KGSVGIAMPTKSSARWIDDGNNIVKQLQE--AGYKTDLQYAD-DDIPNQLSQIENMVTKGVKVLVIASI 68 (330)
T ss_dssp CCEEEEEECCSSSTHHHHHHHHHHHHHHH--TTCEEEEEECT-TCHHHHHHHHHHHHHHTCSEEEECCS
T ss_pred CcEEEEEeCCCcchHHHHHHHHHHHHHHH--cCCEEEEeeCC-CCHHHHHHHHHHHHHcCCCEEEEEcC
Confidence 45676663 3234444444433332111 19998877643 222 1222347999999764
No 233
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=66.21 E-value=38 Score=26.13 Aligned_cols=57 Identities=16% Similarity=0.198 Sum_probs=30.7
Q ss_pred CCCCcEEEEeCC-------chHHHHHH----HHHHHhhhhhcCCceEEEEeCCccc------HHHHhccCCCEEEECCCC
Q 037843 10 NDKNPIVVIDNY-------DSFTYNLC----QYMGELELELSQGYHFEVYRNDELT------VAELKRKKPRGVVISPGP 72 (203)
Q Consensus 10 ~~~~~i~iid~~-------~~~~~~l~----~~l~~~~~~~~~g~~~~v~~~~~~~------~~~l~~~~~dgiil~GG~ 72 (203)
....+|.+|-.. ..|...+. +.+++. |+.+.+...+... .+.+...++||||+.+..
T Consensus 20 ~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~------g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 93 (305)
T 3huu_A 20 NKTLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVR------GYSTRMTVSENSGDLYHEVKTMIQSKSVDGFILLYSL 93 (305)
T ss_dssp -CCCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHH------TCEEEECCCSSHHHHHHHHHHHHHTTCCSEEEESSCB
T ss_pred CCCCEEEEEeCCCccccccCcHHHHHHHHHHHHHHHC------CCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCc
Confidence 334668777433 33433333 344444 8988876543211 112233479999997753
No 234
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=66.16 E-value=14 Score=28.30 Aligned_cols=60 Identities=18% Similarity=0.052 Sum_probs=30.4
Q ss_pred CCCCCcEEEEe--CCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCC
Q 037843 9 KNDKNPIVVID--NYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPG 71 (203)
Q Consensus 9 ~~~~~~i~iid--~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG 71 (203)
++...+|.+|- ..+.|...+.+.+++... ..|+.+.+...+. +.+.....++||||+.+.
T Consensus 5 ~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~--~~g~~~~~~~~~~-~~~~~~~~~vdgiI~~~~ 66 (277)
T 3cs3_A 5 RRQTNIIGVYLADYGGSFYGELLEGIKKGLA--LFDYEMIVCSGKK-SHLFIPEKMVDGAIILDW 66 (277)
T ss_dssp CCCCCEEEEEECSSCTTTHHHHHHHHHHHHH--TTTCEEEEEESTT-TTTCCCTTTCSEEEEECT
T ss_pred ccCCcEEEEEecCCCChhHHHHHHHHHHHHH--HCCCeEEEEeCCC-CHHHHhhccccEEEEecC
Confidence 34446787773 233344444444433211 1288887765431 111111126899999765
No 235
>3lwz_A 3-dehydroquinate dehydratase; AROQ, IDP90771, amino- acid biosynthesis, aromatic amino acid biosynthesis, lyase, structural genomics; 1.65A {Yersinia pestis}
Probab=66.15 E-value=26 Score=25.30 Aligned_cols=29 Identities=10% Similarity=0.174 Sum_probs=18.4
Q ss_pred CceEEEEeCCcccHHHHhc------cCCCEEEECCCC
Q 037843 42 GYHFEVYRNDELTVAELKR------KKPRGVVISPGP 72 (203)
Q Consensus 42 g~~~~v~~~~~~~~~~l~~------~~~dgiil~GG~ 72 (203)
|+.++....+ .+.++.+ .++|||||=+|.
T Consensus 49 g~~~~~~QSN--~EgeLId~Ih~a~~~~dgiiINpgA 83 (153)
T 3lwz_A 49 DVALSHLQSN--AEHALIDSIHQARGNTDFILINPAA 83 (153)
T ss_dssp TEEEEEEECS--CHHHHHHHHHHHTTTCSEEEEECGG
T ss_pred CCEEEEEecC--CHHHHHHHHHHhhhcCceEEEcccc
Confidence 8888877654 2333221 268999996664
No 236
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=64.48 E-value=53 Score=26.23 Aligned_cols=33 Identities=18% Similarity=0.177 Sum_probs=26.9
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRN 50 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~ 50 (203)
+++|+||--+.+-...+++++.+. |++|.+...
T Consensus 4 ~~~i~~iGiGg~Gms~~A~~L~~~------G~~V~~~D~ 36 (326)
T 3eag_A 4 MKHIHIIGIGGTFMGGLAAIAKEA------GFEVSGCDA 36 (326)
T ss_dssp CCEEEEESCCSHHHHHHHHHHHHT------TCEEEEEES
T ss_pred CcEEEEEEECHHHHHHHHHHHHhC------CCEEEEEcC
Confidence 578999998876666688899998 999988754
No 237
>1ehs_A STB, heat-stable enterotoxin B; disulfide; NMR {Escherichia coli} SCOP: g.2.1.1
Probab=64.15 E-value=1.7 Score=23.86 Aligned_cols=12 Identities=25% Similarity=0.490 Sum_probs=9.9
Q ss_pred ehhHHHHHHHhC
Q 037843 96 CMGLKCIGEALE 107 (203)
Q Consensus 96 ClG~Qlla~a~g 107 (203)
|||.|+|..+-|
T Consensus 36 cfgaqimvaakg 47 (48)
T 1ehs_A 36 CFGAQIMVAAKG 47 (48)
T ss_dssp TTTTHHHHTTTT
T ss_pred ccchhHhhhccc
Confidence 999999986644
No 238
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=63.98 E-value=21 Score=26.68 Aligned_cols=90 Identities=12% Similarity=0.071 Sum_probs=50.9
Q ss_pred CCcEEEE----eCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHh----ccCCCEEEECCCCCCCCCcch---
Q 037843 12 KNPIVVI----DNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELK----RKKPRGVVISPGPGAPQESGI--- 80 (203)
Q Consensus 12 ~~~i~ii----d~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~----~~~~dgiil~GG~~~~~~~~~--- 80 (203)
+++|++. |.++--...+...|+.. |+++..+-.+ .+.+++. ..++|.|.+|..... ....
T Consensus 88 ~~~vll~~~~gd~H~iG~~~va~~l~~~------G~~v~~LG~~-vp~~~l~~~~~~~~~d~v~lS~~~~~--~~~~~~~ 158 (210)
T 1y80_A 88 VGKIVLGTVKGDLHDIGKNLVAMMLESG------GFTVYNLGVD-IEPGKFVEAVKKYQPDIVGMSALLTT--TMMNMKS 158 (210)
T ss_dssp CCEEEEEEBTTCCCCHHHHHHHHHHHHT------TCEEEECCSS-BCHHHHHHHHHHHCCSEEEEECCSGG--GTHHHHH
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHC------CCEEEECCCC-CCHHHHHHHHHHcCCCEEEEeccccc--cHHHHHH
Confidence 4567666 44443345566778888 9999877654 4555543 348999999875322 2222
Q ss_pred HHHHHHHhC--CCCceeehhH---HHHHHHhCCee
Q 037843 81 SFRTVLELG--PTMPLFCMGL---KCIGEALEGRL 110 (203)
Q Consensus 81 ~~~~i~~~~--~~~PilClG~---Qlla~a~gg~v 110 (203)
+.+.+++.. .++||++.|. +-++...|+..
T Consensus 159 ~i~~l~~~~~~~~~~v~vGG~~~~~~~~~~~gad~ 193 (210)
T 1y80_A 159 TIDALIAAGLRDRVKVIVGGAPLSQDFADEIGADG 193 (210)
T ss_dssp HHHHHHHTTCGGGCEEEEESTTCCHHHHHHHTCSE
T ss_pred HHHHHHhcCCCCCCeEEEECCCCCHHHHHHcCCeE
Confidence 334444432 3588883332 22334455543
No 239
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=63.79 E-value=9.4 Score=25.31 Aligned_cols=77 Identities=10% Similarity=0.116 Sum_probs=41.0
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcc-cHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHh-
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDEL-TVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLEL- 88 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~-~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~- 88 (203)
+.+|+|+|....+...+.+.++... |..+...-.+.. -.+.+....+|.||+--. .+...+ .+.+.+++.
T Consensus 2 ~~~ilivdd~~~~~~~l~~~l~~~~-----~~~~~~~~~~~~~a~~~~~~~~~dlvllD~~--l~~~~g~~~~~~l~~~~ 74 (130)
T 1dz3_A 2 SIKVCIADDNRELVSLLDEYISSQP-----DMEVIGTAYNGQDCLQMLEEKRPDILLLDII--MPHLDGLAVLERIRAGF 74 (130)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTST-----TEEEEEEESSHHHHHHHHHHHCCSEEEEESC--CSSSCHHHHHHHHHHHC
T ss_pred ceEEEEEcCCHHHHHHHHHHHHhCC-----CceEEEEeCCHHHHHHHHhcCCCCEEEEecC--CCCCCHHHHHHHHHhcC
Confidence 4579999987766777777776641 555432222211 122233336898887321 122222 234555553
Q ss_pred CCCCcee
Q 037843 89 GPTMPLF 95 (203)
Q Consensus 89 ~~~~Pil 95 (203)
....|++
T Consensus 75 ~~~~~ii 81 (130)
T 1dz3_A 75 EHQPNVI 81 (130)
T ss_dssp SSCCEEE
T ss_pred CCCCcEE
Confidence 4567777
No 240
>3soz_A ORF 245 protein, cytoplasmic protein STM1381; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.60A {Salmonella enterica subsp}
Probab=63.26 E-value=5 Score=31.48 Aligned_cols=34 Identities=18% Similarity=0.143 Sum_probs=25.1
Q ss_pred HHHHHHHhhhhhcCCceEEEEeCCcc------cHHHHhccCCCEEEEC
Q 037843 28 LCQYMGELELELSQGYHFEVYRNDEL------TVAELKRKKPRGVVIS 69 (203)
Q Consensus 28 l~~~l~~~~~~~~~g~~~~v~~~~~~------~~~~l~~~~~dgiil~ 69 (203)
+.++|+.. |.+|+.++.++. +.+++. +||.||++
T Consensus 38 ~~~aL~~~------~~~V~~i~~~~~~~~fP~~~~~L~--~yDvIIl~ 77 (248)
T 3soz_A 38 LLSCLRQG------NIDVDYMPAHIVQTRFPQTAEALA--CYDAIVIS 77 (248)
T ss_dssp HHHHHTTT------TCEEEEEETTHHHHSCCCSHHHHH--TCSEEEEE
T ss_pred HHHHHhcC------CceeEEeCchhhhhhCCCChHHHh--cCCEEEEc
Confidence 66677777 999998887531 346665 68999996
No 241
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=62.88 E-value=55 Score=25.85 Aligned_cols=75 Identities=17% Similarity=0.281 Sum_probs=37.8
Q ss_pred CcEEEEeCC--c-hHHHHHHHHHHHhhhhhcCCceEEEEeCCccc------HHHHhc--cCCCEEEECCCCCCCCCcchH
Q 037843 13 NPIVVIDNY--D-SFTYNLCQYMGELELELSQGYHFEVYRNDELT------VAELKR--KKPRGVVISPGPGAPQESGIS 81 (203)
Q Consensus 13 ~~i~iid~~--~-~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~------~~~l~~--~~~dgiil~GG~~~~~~~~~~ 81 (203)
++|.+|-.. + .|...+.+.+++...+. |+.+.+...+... .+.+.. .++||||+.+.. ...
T Consensus 4 ~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~--g~~~~~~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~~~------~~~ 75 (350)
T 3h75_A 4 TSVVFLNPGNSTETFWVSYSQFMQAAARDL--GLDLRILYAERDPQNTLQQARELFQGRDKPDYLMLVNEQ------YVA 75 (350)
T ss_dssp CEEEEEECSCTTCHHHHHHHHHHHHHHHHH--TCEEEEEECTTCHHHHHHHHHHHHHSSSCCSEEEEECCS------SHH
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHHHHHc--CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEeCch------hhH
Confidence 567777433 2 34344444333322111 9998887653211 122233 379999996521 122
Q ss_pred HHHHHHh-CCCCcee
Q 037843 82 FRTVLEL-GPTMPLF 95 (203)
Q Consensus 82 ~~~i~~~-~~~~Pil 95 (203)
...++.+ ..++|++
T Consensus 76 ~~~~~~~~~~giPvV 90 (350)
T 3h75_A 76 PQILRLSQGSGIKLF 90 (350)
T ss_dssp HHHHHHHTTSCCEEE
T ss_pred HHHHHHHHhCCCcEE
Confidence 3344443 4567776
No 242
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=62.82 E-value=41 Score=25.80 Aligned_cols=53 Identities=11% Similarity=0.101 Sum_probs=28.8
Q ss_pred CcEEEEe--CCchHHHHHH----HHHHHhhhhhcCCceEEEEeCCccc-----HHHHhccCCCEEEECCC
Q 037843 13 NPIVVID--NYDSFTYNLC----QYMGELELELSQGYHFEVYRNDELT-----VAELKRKKPRGVVISPG 71 (203)
Q Consensus 13 ~~i~iid--~~~~~~~~l~----~~l~~~~~~~~~g~~~~v~~~~~~~-----~~~l~~~~~dgiil~GG 71 (203)
.+|.+|- ....|...+. +++++. |+.+.+....+.. .+.+...++||||+.+.
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~------g~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 66 (306)
T 8abp_A 3 LKLGFLVKQPEEPWFQTEWKFADKAGKDL------GFEVIKIAVPDGEKTLNAIDSLAASGAKGFVICTP 66 (306)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHHH------TEEEEEEECCSHHHHHHHHHHHHHTTCCEEEEECS
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHHc------CCEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 4566663 2233433333 444555 8988776553211 12223347999999764
No 243
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=62.78 E-value=41 Score=25.67 Aligned_cols=62 Identities=13% Similarity=0.243 Sum_probs=30.6
Q ss_pred CCCCCcEEEE--eC-CchHHHHHHHHHHHhhhhhcCCceEEEEe--CCcccH-------HHHhccCCCEEEECCC
Q 037843 9 KNDKNPIVVI--DN-YDSFTYNLCQYMGELELELSQGYHFEVYR--NDELTV-------AELKRKKPRGVVISPG 71 (203)
Q Consensus 9 ~~~~~~i~ii--d~-~~~~~~~l~~~l~~~~~~~~~g~~~~v~~--~~~~~~-------~~l~~~~~dgiil~GG 71 (203)
++...+|.+| +. ...|...+.+.+++...+. +|+.+.+.. .+..+. +.+...++||||+.+.
T Consensus 5 ~~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~-~g~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 78 (304)
T 3gbv_A 5 SNKKYTFACLLPKHLEGEYWTDVQKGIREAVTTY-SDFNISANITHYDPYDYNSFVATSQAVIEEQPDGVMFAPT 78 (304)
T ss_dssp --CCEEEEEEEECCCTTSHHHHHHHHHHHHHHHT-GGGCEEEEEEEECSSCHHHHHHHHHHHHTTCCSEEEECCS
T ss_pred cCCcceEEEEecCCCCchHHHHHHHHHHHHHHHH-HhCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEECCC
Confidence 3445667655 33 3455555666555542221 155665542 111122 2233458999999764
No 244
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=62.17 E-value=34 Score=23.18 Aligned_cols=76 Identities=11% Similarity=0.194 Sum_probs=41.9
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcc-c-HHHHhc-------cCCCEEEECCCCCCCCCcc-hH
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDEL-T-VAELKR-------KKPRGVVISPGPGAPQESG-IS 81 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~-~-~~~l~~-------~~~dgiil~GG~~~~~~~~-~~ 81 (203)
..+|+|+|........+.+.|+.. |....+....+. . ...+.. ..+|.||+-= ..+...+ .+
T Consensus 8 ~~~ILivdd~~~~~~~l~~~L~~~------~~~~~v~~~~~~~~al~~l~~~~~~~~~~~~dlillD~--~lp~~~g~~l 79 (149)
T 1i3c_A 8 PKVILLVEDSKADSRLVQEVLKTS------TIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDL--NLPKKDGREV 79 (149)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHSC------CSCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECS--CCSSSCHHHH
T ss_pred CCeEEEEECCHHHHHHHHHHHHhc------CCCccEEEeCCHHHHHHHHHhccccccCCCCCEEEEeC--CCCCCcHHHH
Confidence 357999998877777888888876 663333222211 1 122221 2589888821 1122222 23
Q ss_pred HHHHHHhC--CCCcee
Q 037843 82 FRTVLELG--PTMPLF 95 (203)
Q Consensus 82 ~~~i~~~~--~~~Pil 95 (203)
.+.+++.. ..+|++
T Consensus 80 ~~~l~~~~~~~~~pii 95 (149)
T 1i3c_A 80 LAEIKQNPDLKRIPVV 95 (149)
T ss_dssp HHHHHHCTTTTTSCEE
T ss_pred HHHHHhCcCcCCCeEE
Confidence 45555532 568988
No 245
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=61.68 E-value=51 Score=25.06 Aligned_cols=53 Identities=11% Similarity=0.290 Sum_probs=28.9
Q ss_pred CCcEEEEeC--CchHHHHHHH----HHHHhhhhhcCCceEEEEeCCcccH-------HHHhccCCCEEEECCC
Q 037843 12 KNPIVVIDN--YDSFTYNLCQ----YMGELELELSQGYHFEVYRNDELTV-------AELKRKKPRGVVISPG 71 (203)
Q Consensus 12 ~~~i~iid~--~~~~~~~l~~----~l~~~~~~~~~g~~~~v~~~~~~~~-------~~l~~~~~dgiil~GG 71 (203)
+.+|.+|-. .+.|...+.+ ++++. |+.+.+.... .+. +.+...++||||+.+.
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~------g~~~~~~~~~-~~~~~~~~~~~~l~~~~vdgiI~~~~ 67 (290)
T 2fn9_A 2 KGKMAIVISTLNNPWFVVLAETAKQRAEQL------GYEATIFDSQ-NDTAKESAHFDAIIAAGYDAIIFNPT 67 (290)
T ss_dssp -CEEEEEESCSSSHHHHHHHHHHHHHHHHT------TCEEEEEECT-TCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred ceEEEEEeCCCCChHHHHHHHHHHHHHHHc------CCEEEEeCCC-CCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 356766632 3344444443 44444 8888776543 122 2223347999999764
No 246
>1czn_A Flavodoxin; FMN binding, redox potential, electron transport; HET: FMN; 1.70A {Synechococcus elongatus} SCOP: c.23.5.1 PDB: 1czl_A* 1czu_A* 1d04_A* 1ofv_A* 1czr_A* 1czk_A* 1czo_A* 1czh_A* 1d03_A*
Probab=61.65 E-value=13 Score=26.46 Aligned_cols=50 Identities=8% Similarity=0.018 Sum_probs=28.8
Q ss_pred cEEEE-eCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEE
Q 037843 14 PIVVI-DNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVI 68 (203)
Q Consensus 14 ~i~ii-d~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil 68 (203)
+|+|+ -...+++..+++.+.+...+ .+.+++++....+.+++. ++|.|||
T Consensus 2 kilIvY~S~tGnT~~vA~~ia~~l~~---~~~v~~~~~~~~~~~~l~--~~d~ii~ 52 (169)
T 1czn_A 2 KIGLFYGTQTGVTQTIAESIQQEFGG---ESIVDLNDIANADASDLN--AYDYLII 52 (169)
T ss_dssp CEEEEECCSSSHHHHHHHHHHHHHTS---TTTEEEEEGGGCCGGGGG--GCSEEEE
T ss_pred eEEEEEECCCcHHHHHHHHHHHHhCc---ccceEEEEhhhCCHhHHh--hCCEEEE
Confidence 45555 33446778888877664210 124666654333344554 5799999
No 247
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=61.38 E-value=58 Score=25.68 Aligned_cols=73 Identities=14% Similarity=0.143 Sum_probs=39.0
Q ss_pred CCcEEEEeC--CchH---HHHHHHHHHHhhhhhcCC-ceEEEEeCC-------cccHHHHhccCCCEEEECCCCCCCCCc
Q 037843 12 KNPIVVIDN--YDSF---TYNLCQYMGELELELSQG-YHFEVYRND-------ELTVAELKRKKPRGVVISPGPGAPQES 78 (203)
Q Consensus 12 ~~~i~iid~--~~~~---~~~l~~~l~~~~~~~~~g-~~~~v~~~~-------~~~~~~l~~~~~dgiil~GG~~~~~~~ 78 (203)
+.+||||.- +..+ ...|.+.|++. | +.|++.... ..+ +.|. +||.||+.-. +..-.
T Consensus 4 ~~kvLiv~G~~~H~~~~~~~~l~~~l~~~------g~f~V~~~~d~~~~~d~~~f~-~~L~--~~D~vV~~~~-~~~l~- 72 (281)
T 4e5v_A 4 PIKTLLITGQNNHNWQVSHVVLKQILENS------GRFDVDFVISPEQGKDMSGFV-LDFS--PYQLVVLDYN-GDSWP- 72 (281)
T ss_dssp CEEEEEEESCCSSCHHHHHHHHHHHHHHT------TSEEEEEEECCCTTSCCTTCC-CCCT--TCSEEEECCC-SSCCC-
T ss_pred ceEEEEEcCCCCCChHHHHHHHHHHHHhc------CCEEEEEEeCCccccchhHHh-hhhh--cCCEEEEeCC-CCcCC-
Confidence 468899942 1222 23455666665 6 888876431 111 1232 7899997442 22211
Q ss_pred chHHHHHHH-hCCCCcee
Q 037843 79 GISFRTVLE-LGPTMPLF 95 (203)
Q Consensus 79 ~~~~~~i~~-~~~~~Pil 95 (203)
....+.+.+ +.++.+++
T Consensus 73 ~~~~~~l~~yV~~Ggglv 90 (281)
T 4e5v_A 73 EETNRRFLEYVQNGGGVV 90 (281)
T ss_dssp HHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHcCCCEE
Confidence 222344444 45678888
No 248
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=61.06 E-value=36 Score=27.70 Aligned_cols=56 Identities=20% Similarity=0.330 Sum_probs=33.8
Q ss_pred CCcEEEE-eCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHH----HHhccCCCEEEECCCC
Q 037843 12 KNPIVVI-DNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVA----ELKRKKPRGVVISPGP 72 (203)
Q Consensus 12 ~~~i~ii-d~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~----~l~~~~~dgiil~GG~ 72 (203)
.++++|+ -...+++..+++++.+... ..|++++++...+.+.. ++. ++|+||| |.|
T Consensus 256 ~~k~~i~~~S~~gnT~~la~~i~~~l~--~~g~~v~~~~~~~~~~~~~~~~l~--~~d~iii-gsP 316 (404)
T 2ohh_A 256 DERVTVIYDTMHGSTRKMAHAIAEGAM--SEGVDVRVYCLHEDDRSEIVKDIL--ESGAIAL-GAP 316 (404)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHH--TTTCEEEEEETTTSCHHHHHHHHH--TCSEEEE-ECC
T ss_pred CCcEEEEEECCChHHHHHHHHHHHHHH--hCCCeEEEEECCCCCHHHHHHHHH--HCCEEEE-ECc
Confidence 4566666 3334567777776655422 12788888876544444 344 6799999 444
No 249
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=60.19 E-value=14 Score=27.45 Aligned_cols=77 Identities=8% Similarity=-0.019 Sum_probs=45.1
Q ss_pred CCCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHh----ccCCCEEEECCCCCCCCCcc-hHHHH
Q 037843 10 NDKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELK----RKKPRGVVISPGPGAPQESG-ISFRT 84 (203)
Q Consensus 10 ~~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~----~~~~dgiil~GG~~~~~~~~-~~~~~ 84 (203)
..+.+|+|||....+...+.++|+... |..+..... ...+.+. ...||.||+-= ..|...+ .+.+.
T Consensus 5 ~~~~~IlivdD~~~~~~~l~~~L~~~~-----~~~v~~~~~--~~~~~~~~~~~~~~~dlvllD~--~mp~~~G~~~~~~ 75 (225)
T 3klo_A 5 ENKLNVRMLSDVCMQSRLLKEALESKL-----PLALEITPF--SELWLEENKPESRSIQMLVIDY--SRISDDVLTDYSS 75 (225)
T ss_dssp CSSEEEEEESCCSHHHHHHHHHHHHHS-----SEEEEEECG--GGHHHHTTCSGGGGCCEEEEEG--GGCCHHHHHHHHH
T ss_pred CCceEEEEEcCcHHHHHHHHHHHhhCC-----CceEEEEeC--CcHHHHHHHhhccCCCEEEEeC--CCCCCCHHHHHHH
Confidence 346789999988877888888887531 676644322 2233332 23689888811 0111122 23455
Q ss_pred HHH-hCCCCcee
Q 037843 85 VLE-LGPTMPLF 95 (203)
Q Consensus 85 i~~-~~~~~Pil 95 (203)
+++ ...+.||+
T Consensus 76 lr~~~~~~~~ii 87 (225)
T 3klo_A 76 FKHISCPDAKEV 87 (225)
T ss_dssp HHHHHCTTCEEE
T ss_pred HHHhhCCCCcEE
Confidence 666 55678988
No 250
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=60.14 E-value=37 Score=27.17 Aligned_cols=59 Identities=14% Similarity=-0.004 Sum_probs=30.4
Q ss_pred ccCCCCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEE-eCCc----------------ccHHHHh-ccCCCEEEE
Q 037843 7 LSKNDKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVY-RNDE----------------LTVAELK-RKKPRGVVI 68 (203)
Q Consensus 7 ~~~~~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~-~~~~----------------~~~~~l~-~~~~dgiil 68 (203)
++.+.|.||.||-.+.--...+..+++... ++++.-+ ..+. .+.+++. +.++|+|+|
T Consensus 18 ~~~~~mirigiIG~G~ig~~~~~~~~~~~~-----~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~I 92 (350)
T 4had_A 18 LYFQSMLRFGIISTAKIGRDNVVPAIQDAE-----NCVVTAIASRDLTRAREMADRFSVPHAFGSYEEMLASDVIDAVYI 92 (350)
T ss_dssp ----CCEEEEEESCCHHHHHTHHHHHHHCS-----SEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCSSCSEEEE
T ss_pred ccccCccEEEEEcChHHHHHHHHHHHHhCC-----CeEEEEEECCCHHHHHHHHHHcCCCeeeCCHHHHhcCCCCCEEEE
Confidence 444557899999886421223455665542 5555432 2210 1345544 236899999
Q ss_pred CC
Q 037843 69 SP 70 (203)
Q Consensus 69 ~G 70 (203)
+-
T Consensus 93 ~t 94 (350)
T 4had_A 93 PL 94 (350)
T ss_dssp CS
T ss_pred eC
Confidence 43
No 251
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=59.67 E-value=32 Score=24.77 Aligned_cols=76 Identities=8% Similarity=0.044 Sum_probs=39.0
Q ss_pred CCCcEEEEeCC---------chHHHHHHHHHHHhhhhhcCCceEE---EEeCCccc-HHHHhc----cCCCEEEECCCCC
Q 037843 11 DKNPIVVIDNY---------DSFTYNLCQYMGELELELSQGYHFE---VYRNDELT-VAELKR----KKPRGVVISPGPG 73 (203)
Q Consensus 11 ~~~~i~iid~~---------~~~~~~l~~~l~~~~~~~~~g~~~~---v~~~~~~~-~~~l~~----~~~dgiil~GG~~ 73 (203)
.+++|.||--+ +++...+.+.+++..++ .+|+.+. +++.+... .+.+.. .++|.||.+||.|
T Consensus 4 ~~~rv~IistGde~~~G~~~d~n~~~l~~~l~~~~~~-~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~g 82 (167)
T 1uuy_A 4 PEYKVAILTVSDTVSAGAGPDRSGPRAVSVVDSSSEK-LGGAKVVATAVVPDEVERIKDILQKWSDVDEMDLILTLGGTG 82 (167)
T ss_dssp CSEEEEEEEECHHHHTTSSCCSHHHHHHHHHHHTTTT-TTSEEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCCS
T ss_pred CCcEEEEEEECCcccCCCCccCcHHHHHHHHHhcccc-CCCcEEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 45788888433 33444566666654111 1145443 33322111 122221 2689999999975
Q ss_pred CCCCcchHHHHHHHh
Q 037843 74 APQESGISFRTVLEL 88 (203)
Q Consensus 74 ~~~~~~~~~~~i~~~ 88 (203)
+.+.+...+.+.++
T Consensus 83 -~g~~D~t~~a~~~~ 96 (167)
T 1uuy_A 83 -FTPRDVTPEATKKV 96 (167)
T ss_dssp -SSTTCCHHHHHHHH
T ss_pred -CCCCCchHHHHHHH
Confidence 44455555666653
No 252
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=59.43 E-value=14 Score=30.34 Aligned_cols=75 Identities=20% Similarity=0.248 Sum_probs=43.4
Q ss_pred CcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCCC
Q 037843 13 NPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELGPT 91 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~~~ 91 (203)
++|+|||-...+...+.+.|+.. |..+.....-..-.+.+....+|.||+== ..|...+ .+.+.+++....
T Consensus 1 ~~ILiVDDd~~~~~~l~~~L~~~------g~~v~~a~~~~eal~~l~~~~~DlvllDi--~mP~~dG~ell~~lr~~~~~ 72 (368)
T 3dzd_A 1 KRVLVVDDEESITSSLSAILEEE------GYHPDTAKTLREAEKKIKELFFPVIVLDV--WMPDGDGVNFIDFIKENSPD 72 (368)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHT------TCEEEEESSHHHHHHHHHHBCCSEEEEES--EETTEETTTHHHHHHHHCTT
T ss_pred CEEEEEeCCHHHHHHHHHHHHHc------CCEEEEECCHHHHHHHHHhCCCCEEEEeC--CCCCCCHHHHHHHHHhhCCC
Confidence 47999998877778888889888 88775432211112223334688887610 0111122 234555555556
Q ss_pred Ccee
Q 037843 92 MPLF 95 (203)
Q Consensus 92 ~Pil 95 (203)
.||+
T Consensus 73 ~pvI 76 (368)
T 3dzd_A 73 SVVI 76 (368)
T ss_dssp CEEE
T ss_pred CeEE
Confidence 7777
No 253
>1ag9_A Flavodoxin; electron transport, reductive activation; HET: FMN BTB; 1.80A {Escherichia coli} SCOP: c.23.5.1 PDB: 1ahn_A*
Probab=59.17 E-value=26 Score=25.19 Aligned_cols=49 Identities=8% Similarity=-0.049 Sum_probs=29.2
Q ss_pred cEEEE-eCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEE
Q 037843 14 PIVVI-DNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVI 68 (203)
Q Consensus 14 ~i~ii-d~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil 68 (203)
+|+|+ -...+++..+++.+.+... ...+++++.......++. ++|.|||
T Consensus 2 ki~IvY~S~tGnT~~iA~~Ia~~l~----~~~v~i~~~~~~~~~~l~--~~d~ii~ 51 (175)
T 1ag9_A 2 ITGIFFGSDTGNTENIAKMIQKQLG----KDVADVHDIAKSSKEDLE--AYDILLL 51 (175)
T ss_dssp CEEEEECCSSSHHHHHHHHHHHHHC----TTTEEEEEGGGCCHHHHH--TCSEEEE
T ss_pred EEEEEEECCCchHHHHHHHHHHHhc----cCceEEEEcccCChhHhh--hCCEEEE
Confidence 56665 3334667778887766421 224556554434456666 5799999
No 254
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=58.79 E-value=18 Score=28.72 Aligned_cols=66 Identities=20% Similarity=0.272 Sum_probs=41.1
Q ss_pred CcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCC
Q 037843 13 NPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGISFRTVLELGPTM 92 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~~~~~~ 92 (203)
++|+|+-+.+.-...+.++|++. |+.+.+.... .+.+. ++|.||..||.|. +....+.+...+
T Consensus 30 mki~iv~~~~~~~~~l~~~L~~~------g~~v~~~~~~---~~~~~--~~DlvIvlGGDGT------~L~aa~~~~~~~ 92 (278)
T 1z0s_A 30 MRAAVVYKTDGHVKRIEEALKRL------EVEVELFNQP---SEELE--NFDFIVSVGGDGT------ILRILQKLKRCP 92 (278)
T ss_dssp CEEEEEESSSTTHHHHHHHHHHT------TCEEEEESSC---CGGGG--GSSEEEEEECHHH------HHHHHTTCSSCC
T ss_pred eEEEEEeCCcHHHHHHHHHHHHC------CCEEEEcccc---ccccC--CCCEEEEECCCHH------HHHHHHHhCCCC
Confidence 46888866543356677888888 9988664321 11222 5799999899542 334444442228
Q ss_pred cee
Q 037843 93 PLF 95 (203)
Q Consensus 93 Pil 95 (203)
||+
T Consensus 93 Pil 95 (278)
T 1z0s_A 93 PIF 95 (278)
T ss_dssp CEE
T ss_pred cEE
Confidence 888
No 255
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=58.56 E-value=35 Score=25.96 Aligned_cols=60 Identities=13% Similarity=0.278 Sum_probs=30.6
Q ss_pred CCCCCcEEEEeC--CchHHHHHHHHHHHhhhhhcCCce-EEEEeCCccc------HHHHhccCCCEEEECC
Q 037843 9 KNDKNPIVVIDN--YDSFTYNLCQYMGELELELSQGYH-FEVYRNDELT------VAELKRKKPRGVVISP 70 (203)
Q Consensus 9 ~~~~~~i~iid~--~~~~~~~l~~~l~~~~~~~~~g~~-~~v~~~~~~~------~~~l~~~~~dgiil~G 70 (203)
++...+|.+|-. ...|...+.+.+++...+ .|+. +.+....... .+.+...++||||+.+
T Consensus 7 ~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~--~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~ 75 (277)
T 3hs3_A 7 QKKSKMIGIIIPDLNNRFYAQIIDGIQEVIQK--EGYTALISFSTNSDVKKYQNAIINFENNNVDGIITSA 75 (277)
T ss_dssp -CCCCEEEEEESCTTSHHHHHHHHHHHHHHHH--TTCEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred cCCCCEEEEEeCCCCChhHHHHHHHHHHHHHH--CCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEcc
Confidence 344567877733 334444444444332111 1999 7666543211 1223334799999987
No 256
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=58.41 E-value=24 Score=23.77 Aligned_cols=57 Identities=11% Similarity=0.013 Sum_probs=25.7
Q ss_pred CCcEEEE-eCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCC
Q 037843 12 KNPIVVI-DNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPG 71 (203)
Q Consensus 12 ~~~i~ii-d~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG 71 (203)
+++|+++ ..|.+-...+...+++..++. |+.+.+........+... .++|.||.+.-
T Consensus 21 ~kkIlvvC~sG~gTS~ll~~kl~~~~~~~--gi~~~V~~~~~~~~~~~~-~~~DlIist~~ 78 (113)
T 1tvm_A 21 KRKIIVACGGAVATSTMAAEEIKELCQSH--NIPVELIQCRVNEIETYM-DGVHLICTTAR 78 (113)
T ss_dssp SEEEEEESCSCSSHHHHHHHHHHHHHHHT--TCCEEEEEECTTTTTTST-TSCSEEEESSC
T ss_pred ccEEEEECCCCHHHHHHHHHHHHHHHHHc--CCeEEEEEecHHHHhhcc-CCCCEEEECCc
Confidence 4567777 333333343444444332211 776544332211111111 26797777654
No 257
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6
Probab=58.36 E-value=21 Score=25.52 Aligned_cols=23 Identities=22% Similarity=0.055 Sum_probs=15.6
Q ss_pred CCcEEEEeCC---chHHHHHHHHHHH
Q 037843 12 KNPIVVIDNY---DSFTYNLCQYMGE 34 (203)
Q Consensus 12 ~~~i~iid~~---~~~~~~l~~~l~~ 34 (203)
|++|+||... .+++..+.+++.+
T Consensus 3 mMkilii~~S~r~~g~t~~la~~~~~ 28 (184)
T 1rli_A 3 AMKIAVINGGTRSGGNTDVLAEKAVQ 28 (184)
T ss_dssp --CEEEEESSCSSCCHHHHHHHHHHT
T ss_pred CcEEEEEECCCCCCccHHHHHHHHHc
Confidence 3479888654 3778888887765
No 258
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=58.07 E-value=59 Score=24.66 Aligned_cols=58 Identities=17% Similarity=0.239 Sum_probs=30.6
Q ss_pred CcEEEEeC--CchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccH------HHHhccCCCEEEECCCC
Q 037843 13 NPIVVIDN--YDSFTYNLCQYMGELELELSQGYHFEVYRNDELTV------AELKRKKPRGVVISPGP 72 (203)
Q Consensus 13 ~~i~iid~--~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~------~~l~~~~~dgiil~GG~ 72 (203)
.+|.+|-. .+.|...+.+.+++...+ .|+.+.+...+.... +.+...++||||+.+..
T Consensus 16 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~--~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 81 (298)
T 3tb6_A 16 KTIGVLTTYISDYIFPSIIRGIESYLSE--QGYSMLLTSTNNNPDNERRGLENLLSQHIDGLIVEPTK 81 (298)
T ss_dssp CEEEEEESCSSSTTHHHHHHHHHHHHHH--TTCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEECCSS
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHHH--CCCEEEEEeCCCChHHHHHHHHHHHHCCCCEEEEeccc
Confidence 56777732 233444444433332111 199988876532111 12223479999997754
No 259
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=57.82 E-value=30 Score=23.70 Aligned_cols=43 Identities=14% Similarity=0.045 Sum_probs=30.7
Q ss_pred CCCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHh
Q 037843 10 NDKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELK 59 (203)
Q Consensus 10 ~~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~ 59 (203)
+++.+|+|+-++ .+...+.+.|.+. |.++.++..+....+.+.
T Consensus 5 ~~~~~viIiG~G-~~G~~la~~L~~~------g~~v~vid~~~~~~~~~~ 47 (140)
T 3fwz_A 5 DICNHALLVGYG-RVGSLLGEKLLAS------DIPLVVIETSRTRVDELR 47 (140)
T ss_dssp CCCSCEEEECCS-HHHHHHHHHHHHT------TCCEEEEESCHHHHHHHH
T ss_pred cCCCCEEEECcC-HHHHHHHHHHHHC------CCCEEEEECCHHHHHHHH
Confidence 456789999875 4677888889888 999988876533333333
No 260
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=56.32 E-value=19 Score=26.72 Aligned_cols=36 Identities=17% Similarity=0.256 Sum_probs=23.1
Q ss_pred CCCcEEEEe---CCchHHHHHHHHHHHhhhhhcCCceEEEEe
Q 037843 11 DKNPIVVID---NYDSFTYNLCQYMGELELELSQGYHFEVYR 49 (203)
Q Consensus 11 ~~~~i~iid---~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~ 49 (203)
|+++|+||- ...|+...+.+++.++. ..+++++++.
T Consensus 1 M~k~I~vi~GS~R~~S~~~~la~~~~~~~---~~~~~~~~id 39 (190)
T 3u7r_A 1 MVKTVAVMVGSLRKDSLNHKLMKVLQKLA---EGRLEFHLLH 39 (190)
T ss_dssp -CEEEEEEESCCSTTCHHHHHHHHHHHHH---TTTEEEEECC
T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHhc---cCCCEEEEEe
Confidence 567788773 23466777888887653 2278887764
No 261
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=55.87 E-value=32 Score=27.29 Aligned_cols=39 Identities=13% Similarity=0.071 Sum_probs=24.7
Q ss_pred CCCCcEEEEeCC---chHHHHHHHHHHHhhhhhcCCceEEEEeC
Q 037843 10 NDKNPIVVIDNY---DSFTYNLCQYMGELELELSQGYHFEVYRN 50 (203)
Q Consensus 10 ~~~~~i~iid~~---~~~~~~l~~~l~~~~~~~~~g~~~~v~~~ 50 (203)
+++++|++|..- .+++..+.+++.+...+ .|++++++..
T Consensus 56 ~~~mKILiI~GS~R~~S~T~~La~~~~~~l~~--~G~eveiidL 97 (279)
T 2fzv_A 56 APPVRILLLYGSLRARSFSRLAVEEAARLLQF--FGAETRIFDP 97 (279)
T ss_dssp CSCCEEEEEESCCSSSCHHHHHHHHHHHHHHH--TTCEEEEBCC
T ss_pred CCCCEEEEEEeCCCCCCHHHHHHHHHHHHHhh--CCCEEEEEeh
Confidence 346789888543 36777777766443221 2888888764
No 262
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=55.36 E-value=40 Score=26.67 Aligned_cols=58 Identities=19% Similarity=0.100 Sum_probs=29.9
Q ss_pred CCcEEEEe--CCchHHHHHHHHHHHhhhhhcCCceEEEEeCCccc------HHHHhccCCCEEEECCC
Q 037843 12 KNPIVVID--NYDSFTYNLCQYMGELELELSQGYHFEVYRNDELT------VAELKRKKPRGVVISPG 71 (203)
Q Consensus 12 ~~~i~iid--~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~------~~~l~~~~~dgiil~GG 71 (203)
..+|.+|- ....|...+.+.+++.. ...|+.+.+...+... .+.+...++||||+.+.
T Consensus 68 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a--~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdGiIi~~~ 133 (344)
T 3kjx_A 68 VNLVAVIIPSLSNMVFPEVLTGINQVL--EDTELQPVVGVTDYLPEKEEKVLYEMLSWRPSGVIIAGL 133 (344)
T ss_dssp CSEEEEEESCSSSSSHHHHHHHHHHHH--TSSSSEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHHHH--HHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEECC
Confidence 45677663 22334444444443331 1228988776543111 11223347999999764
No 263
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=55.10 E-value=30 Score=26.67 Aligned_cols=57 Identities=11% Similarity=0.180 Sum_probs=31.0
Q ss_pred CCCCCcEEEEeC------Cc-hHHHHHHHHHHHhhhhhcCCceEEEEeCCccc------HHHHhccCCCEEEECCC
Q 037843 9 KNDKNPIVVIDN------YD-SFTYNLCQYMGELELELSQGYHFEVYRNDELT------VAELKRKKPRGVVISPG 71 (203)
Q Consensus 9 ~~~~~~i~iid~------~~-~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~------~~~l~~~~~dgiil~GG 71 (203)
+....+|.+|-. +. .+...+.+.+++. |+.+.+...+... .+.+...++||||+.+.
T Consensus 10 ~~~s~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~------g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~ 79 (301)
T 3miz_A 10 SSRSNTFGIITDYVSTTPYSVDIVRGIQDWANAN------GKTILIANTGGSSEREVEIWKMFQSHRIDGVLYVTM 79 (301)
T ss_dssp --CCCEEEEEESSTTTCCSCHHHHHHHHHHHHHT------TCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred hCCCCEEEEEeCCCcCcccHHHHHHHHHHHHHHC------CCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEecC
Confidence 334566776622 22 2333455556666 9999887653211 11223347999999764
No 264
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=55.08 E-value=36 Score=25.79 Aligned_cols=37 Identities=11% Similarity=0.072 Sum_probs=23.3
Q ss_pred CCcEEEEeCCc---hHHHHHHHHHHHhhhhhcCCceEEEEe
Q 037843 12 KNPIVVIDNYD---SFTYNLCQYMGELELELSQGYHFEVYR 49 (203)
Q Consensus 12 ~~~i~iid~~~---~~~~~l~~~l~~~~~~~~~g~~~~v~~ 49 (203)
|++|+||.... +++..+.+++.+...+.. |++++++.
T Consensus 1 MmkIliI~gS~r~~s~T~~la~~i~~~l~~~~-g~~v~~~d 40 (242)
T 1sqs_A 1 MNKIFIYAGVRNHNSKTLEYTKRLSSIISSRN-NVDISFRT 40 (242)
T ss_dssp CCEEEEEECCCCTTCHHHHHHHHHHHHHHHHS-CCEEEEEC
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHHHHHhc-CCeEEEEE
Confidence 35788886543 678888877655422221 67887765
No 265
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=55.07 E-value=17 Score=24.60 Aligned_cols=78 Identities=8% Similarity=0.159 Sum_probs=42.0
Q ss_pred CCCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcc-cHHHHhcc-CCCEEEECCCCCCCCCcc-hHHHHHH
Q 037843 10 NDKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDEL-TVAELKRK-KPRGVVISPGPGAPQESG-ISFRTVL 86 (203)
Q Consensus 10 ~~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~-~~~~l~~~-~~dgiil~GG~~~~~~~~-~~~~~i~ 86 (203)
...++|+|+|....+...+.+.|+... |..+...-.+.. ..+.+... .+|.||+-=. .+...+ .+.+.++
T Consensus 11 ~~~~~vlivdd~~~~~~~l~~~L~~~~-----~~~~v~~~~~~~~al~~l~~~~~~dlvilD~~--l~~~~g~~~~~~lr 83 (145)
T 3kyj_B 11 GSPYNVMIVDDAAMMRLYIASFIKTLP-----DFKVVAQAANGQEALDKLAAQPNVDLILLDIE--MPVMDGMEFLRHAK 83 (145)
T ss_dssp CCSEEEEEECSCHHHHHHHHHHHTTCT-----TEEEEEEESSHHHHHHHHHHCTTCCEEEECTT--SCCCTTCHHHHHHH
T ss_pred CCCCeEEEEcCCHHHHHHHHHHHHhCC-----CceEEEEECCHHHHHHHHhcCCCCCEEEEeCC--CCCCCHHHHHHHHH
Confidence 346789999988777777777776641 555432212111 12233344 6899998321 122222 3455566
Q ss_pred HhCCCCcee
Q 037843 87 ELGPTMPLF 95 (203)
Q Consensus 87 ~~~~~~Pil 95 (203)
+... .|++
T Consensus 84 ~~~~-~~ii 91 (145)
T 3kyj_B 84 LKTR-AKIC 91 (145)
T ss_dssp HHCC-CEEC
T ss_pred hcCC-CCeE
Confidence 5433 6666
No 266
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=54.93 E-value=53 Score=23.98 Aligned_cols=40 Identities=10% Similarity=0.012 Sum_probs=22.6
Q ss_pred CCcEEEEeCC-----chHHHHHHHHHHHhhhhhcCCceEEEEeCC
Q 037843 12 KNPIVVIDNY-----DSFTYNLCQYMGELELELSQGYHFEVYRND 51 (203)
Q Consensus 12 ~~~i~iid~~-----~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~ 51 (203)
|++|+||... .|++..+.+.+.+..++...+.+++++...
T Consensus 1 M~kilii~gS~r~~~~s~t~~la~~~~~~~~~~g~~~~v~~~dL~ 45 (208)
T 2hpv_A 1 MSKLLVVKAHPLTKEESRSVRALETFLASYRETNPSDEIEILDVY 45 (208)
T ss_dssp -CEEEEEECCSSCTTTCHHHHHHHHHHHHHHHHCTTSEEEEEETT
T ss_pred CCeEEEEEecCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEeeCC
Confidence 3578888533 367776766554432222123888877643
No 267
>3n8k_A 3-dehydroquinate dehydratase; shikimate pathway, lyase, aromatic amino acid biosynthesis, drug target, citrazinic acid, S genomics; HET: D1X; 2.25A {Mycobacterium tuberculosis} PDB: 3n59_A*
Probab=54.88 E-value=19 Score=26.52 Aligned_cols=66 Identities=20% Similarity=0.185 Sum_probs=29.7
Q ss_pred ccccccCCCC-CcEEEEe--------------CCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhc------c
Q 037843 3 EVLKLSKNDK-NPIVVID--------------NYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKR------K 61 (203)
Q Consensus 3 ~~~~~~~~~~-~~i~iid--------------~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~------~ 61 (203)
|.+-..+.|. ++|+||+ ++......+.+.+++...+ .|+.++....+ .+.++.+ .
T Consensus 18 ~~~~~~~~m~~M~IlVLNGPNLNlLG~REP~iYG~~TL~dI~~~l~~~a~~--~G~~l~~~QSN--~EGeLId~Ih~A~~ 93 (172)
T 3n8k_A 18 ENLYFQSHMSELIVNVINGPNLGRLGRREPAVYGGTTHDELVALIEREAAE--LGLKAVVRQSD--SEAQLLDWIHQAAD 93 (172)
T ss_dssp -----------CEEEEEECTTGGGTTTSCHHHHCSCCHHHHHHHHHHHHHH--TTCEEEEEECS--CHHHHHHHHHHHHH
T ss_pred hhhHHHhhcccCEEEEEcCCCccccCCCCCCcCCCCCHHHHHHHHHHHHHH--cCCEEEEEecC--CHHHHHHHHHHhhh
Confidence 4444444443 3688884 1211123344444443211 28888887654 2233221 1
Q ss_pred CCCEEEECCCC
Q 037843 62 KPRGVVISPGP 72 (203)
Q Consensus 62 ~~dgiil~GG~ 72 (203)
++|||||=+|.
T Consensus 94 ~~dgIIINPgA 104 (172)
T 3n8k_A 94 AAEPVILNAGG 104 (172)
T ss_dssp HTCCEEEECGG
T ss_pred cCcEEEECcch
Confidence 57999996654
No 268
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=54.73 E-value=46 Score=22.36 Aligned_cols=55 Identities=20% Similarity=0.192 Sum_probs=32.0
Q ss_pred CcE-EEEeCCchH--HHHHHHHHHHhhhhhcCCceEEEE--eC----CcccHHHHhccCCCEEEECCC
Q 037843 13 NPI-VVIDNYDSF--TYNLCQYMGELELELSQGYHFEVY--RN----DELTVAELKRKKPRGVVISPG 71 (203)
Q Consensus 13 ~~i-~iid~~~~~--~~~l~~~l~~~~~~~~~g~~~~v~--~~----~~~~~~~l~~~~~dgiil~GG 71 (203)
++| +|..+..+. +++..+.|+...++. |+++.+- .. +..+.+++.. .|+||+.+-
T Consensus 3 mkivaVtaCptGiAhTymAAeaLekaA~~~--G~~ikVEtqgs~g~~n~Lt~~~I~~--AD~VIia~d 66 (106)
T 2m1z_A 3 RKIIAVTACATGVAHTYMAAQALKKGAKKM--GNLIKVETQGATGIENELTEKDVNI--GEVVIFAVD 66 (106)
T ss_dssp CEEEEEEECSSCHHHHHHHHHHHHHHHHHH--TCEEEEEEEETTEESSCCCHHHHHH--CSEEEEEES
T ss_pred ccEEEEEECCCcHHHHHHHHHHHHHHHHHC--CCEEEEEEecCccccCCCCHHHHhh--CCEEEEecc
Confidence 444 555676666 344445555543333 7776553 22 2356788874 599999654
No 269
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=54.31 E-value=52 Score=25.08 Aligned_cols=58 Identities=9% Similarity=0.178 Sum_probs=34.9
Q ss_pred CCCCcEEEEeCCchH-HHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHh---------------ccCCCEEEECCCCC
Q 037843 10 NDKNPIVVIDNYDSF-TYNLCQYMGELELELSQGYHFEVYRNDELTVAELK---------------RKKPRGVVISPGPG 73 (203)
Q Consensus 10 ~~~~~i~iid~~~~~-~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~---------------~~~~dgiil~GG~~ 73 (203)
.||++|+|.-. +| -..+++.|.+. |.+|..+.........+. ..++|.||-+.|+.
T Consensus 3 ~m~~~ilVtGa--G~iG~~l~~~L~~~------g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~d~vi~~a~~~ 74 (286)
T 3ius_A 3 AMTGTLLSFGH--GYTARVLSRALAPQ------GWRIIGTSRNPDQMEAIRASGAEPLLWPGEEPSLDGVTHLLISTAPD 74 (286)
T ss_dssp --CCEEEEETC--CHHHHHHHHHHGGG------TCEEEEEESCGGGHHHHHHTTEEEEESSSSCCCCTTCCEEEECCCCB
T ss_pred CCcCcEEEECC--cHHHHHHHHHHHHC------CCEEEEEEcChhhhhhHhhCCCeEEEecccccccCCCCEEEECCCcc
Confidence 35678998874 55 45678888777 888876643322222221 12578999888765
Q ss_pred CC
Q 037843 74 AP 75 (203)
Q Consensus 74 ~~ 75 (203)
..
T Consensus 75 ~~ 76 (286)
T 3ius_A 75 SG 76 (286)
T ss_dssp TT
T ss_pred cc
Confidence 43
No 270
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=54.03 E-value=69 Score=24.21 Aligned_cols=56 Identities=11% Similarity=0.162 Sum_probs=29.5
Q ss_pred CCCCcEEEEeC--CchHHHHHH----HHHHHhhhhhcCCceEEEEeCCcccH-------HHHhccCCCEEEECCCC
Q 037843 10 NDKNPIVVIDN--YDSFTYNLC----QYMGELELELSQGYHFEVYRNDELTV-------AELKRKKPRGVVISPGP 72 (203)
Q Consensus 10 ~~~~~i~iid~--~~~~~~~l~----~~l~~~~~~~~~g~~~~v~~~~~~~~-------~~l~~~~~dgiil~GG~ 72 (203)
....+|.++-. ...|...+. +++++. |+.+.+.... .+. +.+...++||||+.+..
T Consensus 5 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~------g~~~~~~~~~-~~~~~~~~~~~~l~~~~vdgii~~~~~ 73 (289)
T 1dbq_A 5 NHTKSIGLLATSSEAAYFAEIIEAVEKNCFQK------GYTLILGNAW-NNLEKQRAYLSMMAQKRVDGLLVMCSE 73 (289)
T ss_dssp ---CEEEEEESCTTSHHHHHHHHHHHHHHHHH------TCEEEEEECT-TCHHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred CCCCEEEEEeCCCCChHHHHHHHHHHHHHHHc------CCeEEEEcCC-CChHHHHHHHHHHHhCCCCEEEEEecc
Confidence 33456777632 333433333 444455 8888776543 222 22333479999997643
No 271
>2gk3_A Putative cytoplasmic protein; STM3548, structural genomics, PSI, P structure initiative; 2.25A {Salmonella typhimurium} SCOP: c.23.16.9
Probab=53.96 E-value=25 Score=27.30 Aligned_cols=62 Identities=15% Similarity=0.099 Sum_probs=37.1
Q ss_pred HHHHHHHHHhhhhhcCCceEEEEeCC------cccHHHHhccCCCEEEECCCCCCCC--------C---cchHHHHHHHh
Q 037843 26 YNLCQYMGELELELSQGYHFEVYRND------ELTVAELKRKKPRGVVISPGPGAPQ--------E---SGISFRTVLEL 88 (203)
Q Consensus 26 ~~l~~~l~~~~~~~~~g~~~~v~~~~------~~~~~~l~~~~~dgiil~GG~~~~~--------~---~~~~~~~i~~~ 88 (203)
..+.++|+.. ++++++++.. ..+.+++. +||.||+.+-+.... + .....+.|+++
T Consensus 43 ~~l~~aL~~~------~~~v~~~~~~~~~~~fp~~~~~L~--~yDvIIl~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~ 114 (256)
T 2gk3_A 43 TWLLECLRKG------GVDIDYMPAHTVQIAFPESIDELN--RYDVIVISDIGSNTFLLQNETFYQLKIKPNALESIKEY 114 (256)
T ss_dssp HHHHHHHHHT------TCEEEEECHHHHHHCCCCSHHHHH--TCSEEEEESCCHHHHHSCHHHHTTCCCCCCHHHHHHHH
T ss_pred HHHHHHHHhc------CceEEEEecccchhhCCcChhHHh--cCCEEEEeCCchhhcccccccccccccChHHHHHHHHH
Confidence 4577788877 8999887421 12345555 689999976543210 0 02234566663
Q ss_pred -CCCCcee
Q 037843 89 -GPTMPLF 95 (203)
Q Consensus 89 -~~~~Pil 95 (203)
.++..++
T Consensus 115 V~~GGgll 122 (256)
T 2gk3_A 115 VKNGGGLL 122 (256)
T ss_dssp HHTTCEEE
T ss_pred HHhCCEEE
Confidence 4577888
No 272
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=53.87 E-value=78 Score=24.78 Aligned_cols=54 Identities=11% Similarity=0.137 Sum_probs=29.8
Q ss_pred CCcEEEEeC----CchHHHHHH----HHHHHhhhhhcCCceEEEEeCCccc------HHHHhccCCCEEEECCC
Q 037843 12 KNPIVVIDN----YDSFTYNLC----QYMGELELELSQGYHFEVYRNDELT------VAELKRKKPRGVVISPG 71 (203)
Q Consensus 12 ~~~i~iid~----~~~~~~~l~----~~l~~~~~~~~~g~~~~v~~~~~~~------~~~l~~~~~dgiil~GG 71 (203)
..+|.+|-. ...|...+. +.+++. |+.+.+...+... .+.+...++||||+.+.
T Consensus 61 ~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~------g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 128 (338)
T 3dbi_A 61 TQTLGLVVTNTLYHGIYFSELLFHAARMAEEK------GRQLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPR 128 (338)
T ss_dssp CSEEEEEECTTTTSTTHHHHHHHHHHHHHHHT------TCEEEEEECTTSHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred CCEEEEEecCCcccChhHHHHHHHHHHHHHHC------CCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCC
Confidence 456766633 233433333 444444 9998877643211 12223347999999764
No 273
>1wu2_A MOEA protein, molybdopterin biosynthesis MOEA protein; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.30A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1xi8_A
Probab=53.11 E-value=11 Score=31.67 Aligned_cols=44 Identities=16% Similarity=0.154 Sum_probs=24.8
Q ss_pred chHHHHHHHHHHHhhhhhcCCceEEEEe--CCcccHHHHh----c--cCCCEEEECCCCC
Q 037843 22 DSFTYNLCQYMGELELELSQGYHFEVYR--NDELTVAELK----R--KKPRGVVISPGPG 73 (203)
Q Consensus 22 ~~~~~~l~~~l~~~~~~~~~g~~~~v~~--~~~~~~~~l~----~--~~~dgiil~GG~~ 73 (203)
+++...+..++++. |+.+..+. .|+ .+.+. . .++|.||.+||.+
T Consensus 210 Dsn~~~L~~~l~~~------G~~v~~~~iv~Dd--~~~i~~~l~~a~~~~DlvittGG~s 261 (396)
T 1wu2_A 210 ETNSIMLQGLVEKF------FGEPILYGVLPDD--ESIIKETLEKAKNECDIVLITGGSA 261 (396)
T ss_dssp CCHHHHHHHHHHHT------TCEEEEEEEECSC--HHHHTTHHHHHHHCSEEEECC----
T ss_pred cchHHHHHHHHHHC------CCEEEEEEEeCCC--HHHHHHHHHHHhhCCCEEEEeCCCC
Confidence 35667788899998 88765322 222 22221 1 1589999999876
No 274
>2wc1_A Flavodoxin; electron transport, flavoprotein; HET: FMN; 2.17A {Rhodobacter capsulatus}
Probab=52.91 E-value=16 Score=26.48 Aligned_cols=52 Identities=8% Similarity=0.052 Sum_probs=30.3
Q ss_pred CCcEEEE-eCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEE
Q 037843 12 KNPIVVI-DNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVI 68 (203)
Q Consensus 12 ~~~i~ii-d~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil 68 (203)
|++|+|+ -...+++..+++.+.+.. ...+.+++++..+.+.+++. ++|.|||
T Consensus 1 M~kilIiY~S~tGnT~~iA~~ia~~l---~~~~~v~~~~~~~~~~~~l~--~~d~ii~ 53 (182)
T 2wc1_A 1 MAKIGLFFGSDTGTTRKIAKQIKDMF---DDEVMAKPLNVNRADVADFM--AYDFLIL 53 (182)
T ss_dssp CCSEEEEECCSSSHHHHHHHHHHTTS---CTTTBCCCEEGGGCCHHHHH--HCSEEEE
T ss_pred CcEEEEEEECCCchHHHHHHHHHHHh---cccCceEEEEcccCCHHHHh--hCCeEEE
Confidence 3567666 333466777888776642 11223445554434556665 4799998
No 275
>3czc_A RMPB; alpha/beta sandwich, phosphotransferase system, transferase, transport; 2.02A {Streptococcus mutans}
Probab=52.66 E-value=31 Score=22.98 Aligned_cols=55 Identities=18% Similarity=0.014 Sum_probs=24.8
Q ss_pred CCcEEEEe-CCchHHHHHHHHHHHhhhhhcCCce-EEEEeCCcccHHHHhc--cCCCEEEECCC
Q 037843 12 KNPIVVID-NYDSFTYNLCQYMGELELELSQGYH-FEVYRNDELTVAELKR--KKPRGVVISPG 71 (203)
Q Consensus 12 ~~~i~iid-~~~~~~~~l~~~l~~~~~~~~~g~~-~~v~~~~~~~~~~l~~--~~~dgiil~GG 71 (203)
+++|+++- .+-+-...+...+++..++. |++ +.+... +..++.. .++|.||.+.-
T Consensus 18 ~~kIlvvC~sG~gTS~m~~~kl~~~~~~~--gi~~~~i~~~---~~~~~~~~~~~~DlIi~t~~ 76 (110)
T 3czc_A 18 MVKVLTACGNGMGSSMVIKMKVENALRQL--GVSDIESASC---SVGEAKGLASNYDIVVASNH 76 (110)
T ss_dssp CEEEEEECCCCHHHHHHHHHHHHHHHHHT--TCCCEEEEEE---CHHHHHHHGGGCSEEEEETT
T ss_pred CcEEEEECCCcHHHHHHHHHHHHHHHHHc--CCCeEEEEEe---eHHHHhhccCCCcEEEECCc
Confidence 56676663 33232333332343332111 776 544322 2333321 26897777654
No 276
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=52.46 E-value=70 Score=26.13 Aligned_cols=58 Identities=9% Similarity=0.295 Sum_probs=27.8
Q ss_pred ccccCCCCCcEEEE-eCCchHHHHHH----HHHHHhhhhhcCCceEEEEeCCcc--cHHHHhccCCCEEEE
Q 037843 5 LKLSKNDKNPIVVI-DNYDSFTYNLC----QYMGELELELSQGYHFEVYRNDEL--TVAELKRKKPRGVVI 68 (203)
Q Consensus 5 ~~~~~~~~~~i~ii-d~~~~~~~~l~----~~l~~~~~~~~~g~~~~v~~~~~~--~~~~l~~~~~dgiil 68 (203)
..++.+...+|.|| +....|...+. +++++. |+.+.+...+.. ..+.+...++||||+
T Consensus 18 ~~~~~~~s~~Igvv~~~~~~f~~~l~~gi~~~a~~~------g~~~~i~~~~~~~~~i~~l~~~~vDGiIi 82 (412)
T 4fe7_A 18 GSHMFTKRHRITLLFNANKAYDRQVVEGVGEYLQAS------QSEWDIFIEEDFRARIDKIKDWLGDGVIA 82 (412)
T ss_dssp ---CCCCCEEEEEECCTTSHHHHHHHHHHHHHHHHH------TCCEEEEECC-CC--------CCCSEEEE
T ss_pred CCcCCCCCceEEEEeCCcchhhHHHHHHHHHHHHhc------CCCeEEEecCCccchhhhHhcCCCCEEEE
Confidence 34455555677666 43333433344 444444 888877654321 123344457999999
No 277
>3edo_A Flavoprotein, putative Trp repressor binding protein; YP_193882.1, flavoprotein in complex with FMN, structural genomics; HET: MSE FMN; 1.20A {Lactobacillus acidophilus ncfm}
Probab=52.26 E-value=19 Score=25.30 Aligned_cols=24 Identities=4% Similarity=0.145 Sum_probs=16.6
Q ss_pred CCCcEEEE-eCCchHHHHHHHHHHH
Q 037843 11 DKNPIVVI-DNYDSFTYNLCQYMGE 34 (203)
Q Consensus 11 ~~~~i~ii-d~~~~~~~~l~~~l~~ 34 (203)
|+++|+|+ -...+++..+++.+.+
T Consensus 2 M~~kilIvY~S~tGnT~~iA~~Ia~ 26 (151)
T 3edo_A 2 MAKKTLILYYSWSGETKKMAEKINS 26 (151)
T ss_dssp CCCCEEEEECCSSSHHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCcHHHHHHHHHH
Confidence 56678777 3445678888888843
No 278
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=51.77 E-value=78 Score=24.18 Aligned_cols=31 Identities=3% Similarity=0.209 Sum_probs=19.0
Q ss_pred CceEEEEeCCcc-c----HHHHhccCCCEEEECCCC
Q 037843 42 GYHFEVYRNDEL-T----VAELKRKKPRGVVISPGP 72 (203)
Q Consensus 42 g~~~~v~~~~~~-~----~~~l~~~~~dgiil~GG~ 72 (203)
|+.+.+...+.. . .+.+...++||||+.+..
T Consensus 40 g~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~ 75 (294)
T 3qk7_A 40 GLDLLLIPDEPGEKYQSLIHLVETRRVDALIVAHTQ 75 (294)
T ss_dssp TCEEEEEEECTTCCCHHHHHHHHHTCCSEEEECSCC
T ss_pred CCEEEEEeCCChhhHHHHHHHHHcCCCCEEEEeCCC
Confidence 998887654321 1 122333479999997754
No 279
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=51.73 E-value=84 Score=24.54 Aligned_cols=58 Identities=12% Similarity=0.154 Sum_probs=29.3
Q ss_pred CCcEEEEe--CCchHHHHHHHHHHHhhhhhcCCceEEEEeCCccc------HHHHhccCCCEEEECCC
Q 037843 12 KNPIVVID--NYDSFTYNLCQYMGELELELSQGYHFEVYRNDELT------VAELKRKKPRGVVISPG 71 (203)
Q Consensus 12 ~~~i~iid--~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~------~~~l~~~~~dgiil~GG 71 (203)
..+|.+|- ....|...+.+.+++... ..|+.+.+...+... .+.+...++||||+.+.
T Consensus 63 ~~~Ig~i~~~~~~~~~~~~~~gi~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 128 (332)
T 2o20_A 63 TTTVGVILPTITSTYFAAITRGVDDIAS--MYKYNMILANSDNDVEKEEKVLETFLSKQVDGIVYMGS 128 (332)
T ss_dssp CCEEEEEESCTTCHHHHHHHHHHHHHHH--HTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECSS
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHH--HcCCEEEEEECCCChHHHHHHHHHHHhCCCCEEEEeCC
Confidence 35676663 333343334433333211 118988776543111 12223347999999774
No 280
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=51.70 E-value=20 Score=28.66 Aligned_cols=32 Identities=6% Similarity=0.140 Sum_probs=19.1
Q ss_pred CCcEEEEeCCchH-----HHHHHHHHHHhhhhhcCCceEEEEe
Q 037843 12 KNPIVVIDNYDSF-----TYNLCQYMGELELELSQGYHFEVYR 49 (203)
Q Consensus 12 ~~~i~iid~~~~~-----~~~l~~~l~~~~~~~~~g~~~~v~~ 49 (203)
|++|+||-+-.+- ...+.++|++. |+.+.+..
T Consensus 4 m~ki~iI~n~~~~~~~~~~~~l~~~L~~~------g~~v~~~~ 40 (307)
T 1u0t_A 4 HRSVLLVVHTGRDEATETARRVEKVLGDN------KIALRVLS 40 (307)
T ss_dssp -CEEEEEESSSGGGGSHHHHHHHHHHHTT------TCEEEEEC
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHHC------CCEEEEec
Confidence 5678888554321 33456667666 88876643
No 281
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=51.70 E-value=21 Score=29.68 Aligned_cols=75 Identities=16% Similarity=0.195 Sum_probs=44.2
Q ss_pred CcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHh--C
Q 037843 13 NPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLEL--G 89 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~--~ 89 (203)
.+|+|||-.......+.+.|+.. |..+.....-..-.+.+....+|.||+-= ..|...+ .+.+.+++. .
T Consensus 2 ~~iLivdD~~~~~~~l~~~L~~~------~~~v~~a~~~~~al~~~~~~~~dlvllD~--~mp~~~G~~~~~~l~~~~~~ 73 (459)
T 1w25_A 2 ARILVVDDIEANVRLLEAKLTAE------YYEVSTAMDGPTALAMAARDLPDIILLDV--MMPGMDGFTVCRKLKDDPTT 73 (459)
T ss_dssp CEEEEECSSTTHHHHHHHHHHHT------TCEEEEESSHHHHHHHHHHHCCSEEEEES--CCSSSCHHHHHHHHHHSTTT
T ss_pred CeEEEEeCCHHHHHHHHHHHHHc------CCEEEEECCHHHHHHHHhcCCCCEEEEcC--CCCCCCHHHHHHHHhcCccc
Confidence 57999998877788888888887 88766543211112223333689888711 1222222 234555553 2
Q ss_pred CCCcee
Q 037843 90 PTMPLF 95 (203)
Q Consensus 90 ~~~Pil 95 (203)
..+||+
T Consensus 74 ~~~pii 79 (459)
T 1w25_A 74 RHIPVV 79 (459)
T ss_dssp TTSCEE
T ss_pred CCCCEE
Confidence 468988
No 282
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=51.48 E-value=73 Score=23.77 Aligned_cols=52 Identities=8% Similarity=0.247 Sum_probs=28.3
Q ss_pred cEEEE--eCCchHHHHHH----HHHHHhhhhhcCCceEEEEeCC-cccH-------HHHhccC-CCEEEECCC
Q 037843 14 PIVVI--DNYDSFTYNLC----QYMGELELELSQGYHFEVYRND-ELTV-------AELKRKK-PRGVVISPG 71 (203)
Q Consensus 14 ~i~ii--d~~~~~~~~l~----~~l~~~~~~~~~g~~~~v~~~~-~~~~-------~~l~~~~-~dgiil~GG 71 (203)
+|.+| +..+.|...+. +++++. |+.+.+...+ ..+. +.+...+ +||||+.+.
T Consensus 2 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~------g~~~~~~~~~~~~~~~~~~~~i~~l~~~~~vdgii~~~~ 68 (276)
T 3ksm_A 2 KLLLVLKGDSNAYWRQVYLGAQKAADEA------GVTLLHRSTKDDGDIAGQIQILSYHLSQAPPDALILAPN 68 (276)
T ss_dssp EEEEECSCSSSTHHHHHHHHHHHHHHHH------TCEEEECCCSSTTCHHHHHHHHHHHHHHSCCSEEEECCS
T ss_pred eEEEEeCCCCChHHHHHHHHHHHHHHHc------CCEEEEECCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 56666 33333444444 444555 9998876532 1222 1222336 999999764
No 283
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=51.15 E-value=74 Score=23.72 Aligned_cols=58 Identities=9% Similarity=0.159 Sum_probs=30.4
Q ss_pred CcEEEE--eCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCccc------HHHHhccCCCEEEECCCC
Q 037843 13 NPIVVI--DNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELT------VAELKRKKPRGVVISPGP 72 (203)
Q Consensus 13 ~~i~ii--d~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~------~~~l~~~~~dgiil~GG~ 72 (203)
.+|.+| +....|...+.+.+++...+ .|+.+.+...+... .+.+...++||||+.+..
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~--~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 68 (272)
T 3o74_A 3 RTLGFILPDLENPSYARIAKQLEQGARA--RGYQLLIASSDDQPDSERQLQQLFRARRCDALFVASCL 68 (272)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHH--TTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCC
T ss_pred eEEEEEeCCCcChhHHHHHHHHHHHHHH--CCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCc
Confidence 456666 33334444444444333211 19999887654211 112333479999997753
No 284
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=50.95 E-value=63 Score=24.57 Aligned_cols=60 Identities=13% Similarity=0.221 Sum_probs=30.2
Q ss_pred CCCCCcEEEEeC--CchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccH-------HHHhccCCCEEEECCC
Q 037843 9 KNDKNPIVVIDN--YDSFTYNLCQYMGELELELSQGYHFEVYRNDELTV-------AELKRKKPRGVVISPG 71 (203)
Q Consensus 9 ~~~~~~i~iid~--~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~-------~~l~~~~~dgiil~GG 71 (203)
++...+|.+|-. ...|...+.+.+++... ..|+.+.+...+ .+. +.+...++||||+.+.
T Consensus 5 ~~~~~~Igvi~~~~~~~~~~~~~~gi~~~~~--~~g~~~~~~~~~-~~~~~~~~~~~~l~~~~vdgiI~~~~ 73 (285)
T 3c3k_A 5 TAKTGMLLVMVSNIANPFCAAVVKGIEKTAE--KNGYRILLCNTE-SDLARSRSCLTLLSGKMVDGVITMDA 73 (285)
T ss_dssp --CCCEEEEEESCTTSHHHHHHHHHHHHHHH--HTTCEEEEEECT-TCHHHHHHHTHHHHTTCCSEEEECCC
T ss_pred CCCCCEEEEEeCCCCCchHHHHHHHHHHHHH--HcCCEEEEEeCC-CCHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 334467777633 33343344443333211 118988776543 222 1223347999999764
No 285
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=50.74 E-value=50 Score=26.06 Aligned_cols=53 Identities=17% Similarity=0.189 Sum_probs=30.5
Q ss_pred CCcEEEEe--CCchHHHHHH----HHHHHhhhhhcCCceEEEEeCCcccH------HHHhccCCCEEEECCC
Q 037843 12 KNPIVVID--NYDSFTYNLC----QYMGELELELSQGYHFEVYRNDELTV------AELKRKKPRGVVISPG 71 (203)
Q Consensus 12 ~~~i~iid--~~~~~~~~l~----~~l~~~~~~~~~g~~~~v~~~~~~~~------~~l~~~~~dgiil~GG 71 (203)
..+|.+|- ....|...+. +.+++. |+.+.+...+. .. +.+...++||||+.+.
T Consensus 64 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~------g~~~~~~~~~~-~~~~~~~~~~l~~~~vdGiIi~~~ 128 (333)
T 3jvd_A 64 SALVGVIVPDLSNEYYSESLQTIQQDLKAA------GYQMLVAEANS-VQAQDVVMESLISIQAAGIIHVPV 128 (333)
T ss_dssp CCEEEEEESCSSSHHHHHHHHHHHHHHHHH------TCEEEEEECCS-HHHHHHHHHHHHHHTCSEEEECCC
T ss_pred CCEEEEEeCCCcChHHHHHHHHHHHHHHHC------CCEEEEECCCC-hHHHHHHHHHHHhCCCCEEEEcch
Confidence 45676663 3333433344 444555 99988876543 21 1122347999999876
No 286
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=50.64 E-value=80 Score=23.98 Aligned_cols=61 Identities=21% Similarity=0.274 Sum_probs=30.7
Q ss_pred CCCCCcEEEEeCC--c--hHHHHHHHHHHHhhhhhcCCceEEEEeCCcc--cHHH----HhccCCCEEEECCC
Q 037843 9 KNDKNPIVVIDNY--D--SFTYNLCQYMGELELELSQGYHFEVYRNDEL--TVAE----LKRKKPRGVVISPG 71 (203)
Q Consensus 9 ~~~~~~i~iid~~--~--~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~--~~~~----l~~~~~dgiil~GG 71 (203)
+....+|.||-.. + .|...+.+.+++... ..|+.+.+...+.. ...+ +...++||||+.+.
T Consensus 5 ~~~s~~Igvv~~~~~~~~~~~~~~~~gi~~~a~--~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 75 (288)
T 3gv0_A 5 TGKTNVIALVLSVDEELMGFTSQMVFGITEVLS--TTQYHLVVTPHIHAKDSMVPIRYILETGSADGVIISKI 75 (288)
T ss_dssp --CCCEEEEECBCCCCSSCHHHHHHHHHHHHHT--TSSCEEEECCBSSGGGTTHHHHHHHHHTCCSEEEEESC
T ss_pred cCCCCEEEEEecCCccccHHHHHHHHHHHHHHH--HcCCEEEEecCCcchhHHHHHHHHHHcCCccEEEEecC
Confidence 3445667666221 1 454555554544321 22888877654311 1111 22347999999764
No 287
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=50.05 E-value=43 Score=26.64 Aligned_cols=54 Identities=11% Similarity=0.110 Sum_probs=28.5
Q ss_pred CCcEEEEeC--CchHHHHHH----HHHHHhhhhhcCCceEEEEeCCccc------HHHHhccCCCEEEECCC
Q 037843 12 KNPIVVIDN--YDSFTYNLC----QYMGELELELSQGYHFEVYRNDELT------VAELKRKKPRGVVISPG 71 (203)
Q Consensus 12 ~~~i~iid~--~~~~~~~l~----~~l~~~~~~~~~g~~~~v~~~~~~~------~~~l~~~~~dgiil~GG 71 (203)
...|.+|-. ...|...+. +.+++. |+.+.+...+... .+.+...++||||+.+.
T Consensus 70 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~------g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~ 135 (355)
T 3e3m_A 70 SGFVGLLLPSLNNLHFAQTAQSLTDVLEQG------GLQLLLGYTAYSPEREEQLVETMLRRRPEAMVLSYD 135 (355)
T ss_dssp -CEEEEEESCSBCHHHHHHHHHHHHHHHHT------TCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEEECS
T ss_pred CCEEEEEeCCCCchHHHHHHHHHHHHHHHC------CCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCC
Confidence 356766632 223333333 444444 9998876543111 11222347999999764
No 288
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=50.05 E-value=71 Score=24.44 Aligned_cols=59 Identities=12% Similarity=0.153 Sum_probs=30.1
Q ss_pred CCcEEEEeC-------CchHHHHHHHHHHHhhhhhcCCceEEEEeCCccc------HHHHhccCCCEEEECCCC
Q 037843 12 KNPIVVIDN-------YDSFTYNLCQYMGELELELSQGYHFEVYRNDELT------VAELKRKKPRGVVISPGP 72 (203)
Q Consensus 12 ~~~i~iid~-------~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~------~~~l~~~~~dgiil~GG~ 72 (203)
..+|.+|-. ...|...+.+.+++.. ...|+.+.+...+... .+.+...++||||+.+..
T Consensus 7 s~~Igvi~~~~~~~~~~~~f~~~~~~gi~~~a--~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~ 78 (295)
T 3hcw_A 7 TYKIGLVLKGSEEPIRLNPFYINVLLGISETC--NQHGYGTQTTVSNNMNDLMDEVYKMIKQRMVDAFILLYSK 78 (295)
T ss_dssp SCEEEEECSCCCHHHHSCHHHHHHHHHHHHHH--HTTTCEEEECCCCSHHHHHHHHHHHHHTTCCSEEEESCCC
T ss_pred CcEEEEEeecCCcccccChHHHHHHHHHHHHH--HHCCCEEEEEcCCCChHHHHHHHHHHHhCCcCEEEEcCcc
Confidence 456777641 2234334444443331 1228988776543211 112333479999998653
No 289
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=49.68 E-value=42 Score=26.33 Aligned_cols=54 Identities=17% Similarity=0.215 Sum_probs=29.0
Q ss_pred CCcEEEEe--CCchHHHHHH----HHHHHhhhhhcCCceEEEEeCCcccH------HHHhccCCCEEEECCC
Q 037843 12 KNPIVVID--NYDSFTYNLC----QYMGELELELSQGYHFEVYRNDELTV------AELKRKKPRGVVISPG 71 (203)
Q Consensus 12 ~~~i~iid--~~~~~~~~l~----~~l~~~~~~~~~g~~~~v~~~~~~~~------~~l~~~~~dgiil~GG 71 (203)
..+|.+|- ....|...+. +++++. |+.+.+...+.... +.+...++||||+.+.
T Consensus 60 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~------g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 125 (332)
T 2hsg_A 60 TTTVGVIIPDISNIFYAELARGIEDIATMY------KYNIILSNSDQNQDKELHLLNNMLGKQVDGIIFMSG 125 (332)
T ss_dssp CCEEEEEEC--CCSHHHHHHHHHHHHHHHH------TCEEEEEECCSHHHHHHHHHHHTSCCSSCCEEECCS
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHHc------CCEEEEEeCCCChHHHHHHHHHHHhCCCcEEEEecC
Confidence 45676663 2333433333 444555 89887765432111 1122247999999764
No 290
>2him_A L-asparaginase 1; hydrolase; 1.82A {Escherichia coli} PDB: 2p2d_A 2p2n_A 3ntx_A* 2ocd_A
Probab=49.02 E-value=25 Score=28.97 Aligned_cols=34 Identities=9% Similarity=0.233 Sum_probs=22.1
Q ss_pred CCCEEEECC-CCCCCCCcchHHHHHHH-hCCCCcee
Q 037843 62 KPRGVVISP-GPGAPQESGISFRTVLE-LGPTMPLF 95 (203)
Q Consensus 62 ~~dgiil~G-G~~~~~~~~~~~~~i~~-~~~~~Pil 95 (203)
.++||||-| |.|+......+.+.+++ .++++||.
T Consensus 253 g~~GiVle~~G~Gn~p~~~~~~~~l~~a~~~Gi~VV 288 (358)
T 2him_A 253 PVKALILRSYGVGNAPQNKAFLQELQEASDRGIVVV 288 (358)
T ss_dssp SCSEEEEEEBTTTBCCCCHHHHHHHHHHHHTTCEEE
T ss_pred CCCEEEEecCCCCCCCCcHHHHHHHHHHHHCCCEEE
Confidence 589999844 44554432345666666 46789998
No 291
>2r4q_A Phosphotransferase system (PTS) fructose-specific iiabc component; fructose specific IIB subunit, PF structural genomics, PSI-2; HET: MSE; 1.60A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=48.90 E-value=57 Score=21.86 Aligned_cols=55 Identities=18% Similarity=0.294 Sum_probs=32.4
Q ss_pred CcEEEEeCCchH--HHHHHHHHHHhhhhhcCCceEEE--EeC----CcccHHHHhccCCCEEEECCC
Q 037843 13 NPIVVIDNYDSF--TYNLCQYMGELELELSQGYHFEV--YRN----DELTVAELKRKKPRGVVISPG 71 (203)
Q Consensus 13 ~~i~iid~~~~~--~~~l~~~l~~~~~~~~~g~~~~v--~~~----~~~~~~~l~~~~~dgiil~GG 71 (203)
.-|+|..+-.+. +++..+.|+...++. |+.+.+ --. +..+.+++.. .|+|||.+.
T Consensus 4 kivaVTaCptGiAhTymAaeaL~~aA~~~--G~~ikVEtqGs~G~~n~Lt~~~I~~--Ad~VIiA~d 66 (106)
T 2r4q_A 4 KILAVTACPTGIAHTFMAADALKEKAKEL--GVEIKVETNGSSGIKHKLTAQEIED--APAIIVAAD 66 (106)
T ss_dssp CEEEEEECSCC--CHHHHHHHHHHHHHHH--TCCEEEEEEETTEEESCCCHHHHHH--CSCEEEEES
T ss_pred eEEEEecCCCcHHHHHHHHHHHHHHHHHC--CCeEEEEecCCCCccCCCCHHHHHh--CCEEEEEeC
Confidence 345666666554 566666665553333 777655 111 1367788885 599999765
No 292
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=48.81 E-value=90 Score=24.03 Aligned_cols=53 Identities=15% Similarity=0.181 Sum_probs=27.6
Q ss_pred CcEEEEeCCc-hHHHHHH----HHHHHhhhhhcCCceEEEEeCCcccH-------HHHhccCCCEEEECCC
Q 037843 13 NPIVVIDNYD-SFTYNLC----QYMGELELELSQGYHFEVYRNDELTV-------AELKRKKPRGVVISPG 71 (203)
Q Consensus 13 ~~i~iid~~~-~~~~~l~----~~l~~~~~~~~~g~~~~v~~~~~~~~-------~~l~~~~~dgiil~GG 71 (203)
.+|.+|-... .|...+. +++++. |+.+.+......+. +.+...++||||+.+.
T Consensus 2 ~~Ig~i~~~~~~~~~~~~~gi~~~~~~~------g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 66 (313)
T 2h3h_A 2 LTIGVIGKSVHPYWSQVEQGVKAAGKAL------GVDTKFFVPQKEDINAQLQMLESFIAEGVNGIAIAPS 66 (313)
T ss_dssp CEEEEECSCSSHHHHHHHHHHHHHHHHH------TCEEEEECCSSSCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred eEEEEEeCCCcHHHHHHHHHHHHHHHHc------CCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 4676663221 1433333 444555 88887753211222 2223347999999764
No 293
>4ici_A Putative flavoprotein; PF12682 family protein, flavodoxin_4, structural genomics, J center for structural genomics, JCSG; HET: MSE FMN EPE; 1.40A {Bacteroides eggerthii}
Probab=48.43 E-value=46 Score=23.88 Aligned_cols=24 Identities=17% Similarity=0.135 Sum_probs=16.0
Q ss_pred CCcEEEE-eCCchHHHHHHHHHHHh
Q 037843 12 KNPIVVI-DNYDSFTYNLCQYMGEL 35 (203)
Q Consensus 12 ~~~i~ii-d~~~~~~~~l~~~l~~~ 35 (203)
+++++|+ -...+++..+++.+.+.
T Consensus 13 ~mkilIvY~S~tGnT~~vA~~Ia~~ 37 (171)
T 4ici_A 13 NSKILVAYFSATGTTARAAEKLGAA 37 (171)
T ss_dssp CCCEEEEECCSSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCChHHHHHHHHHHH
Confidence 5677777 33346688888887664
No 294
>2kyr_A Fructose-like phosphotransferase enzyme IIB compo; ALP protein, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=48.42 E-value=61 Score=21.95 Aligned_cols=57 Identities=16% Similarity=0.235 Sum_probs=33.7
Q ss_pred CCCcE-EEEeCCchH--HHHHHHHHHHhhhhhcCCceEEEEe--C----CcccHHHHhccCCCEEEECCC
Q 037843 11 DKNPI-VVIDNYDSF--TYNLCQYMGELELELSQGYHFEVYR--N----DELTVAELKRKKPRGVVISPG 71 (203)
Q Consensus 11 ~~~~i-~iid~~~~~--~~~l~~~l~~~~~~~~~g~~~~v~~--~----~~~~~~~l~~~~~dgiil~GG 71 (203)
|+++| +|..+-.+. +++..+.|+...++. |+++.+-- . +..+.+++.. .|+|||.+.
T Consensus 4 m~mkIvaVTaCptGiAHTyMAAeaL~~aA~~~--G~~ikVEtqGs~G~~n~Lt~~~I~~--Ad~VIiA~d 69 (111)
T 2kyr_A 4 MSKKLIALCACPMGLAHTFMAAQALEEAAVEA--GYEVKIETQGADGIQNRLTAQDIAE--ATIIIHSVA 69 (111)
T ss_dssp CCCEEEEEEEESSCHHHHHHHHHHHHHHHHHT--SSEEEEEEEETTEEESCCCHHHHHH--CSEEEEEES
T ss_pred ccccEEEEEcCCCcHHHHHHHHHHHHHHHHHC--CCeEEEEecCCCCcCCCCCHHHHHh--CCEEEEEeC
Confidence 34555 555666555 455556665543322 88876621 1 1367888885 599999664
No 295
>3u80_A 3-dehydroquinate dehydratase, type II; structural genomics, center for structural genomics of infec diseases, csgid, unknown function; 1.60A {Bifidobacterium longum} SCOP: c.23.13.0
Probab=48.26 E-value=47 Score=23.87 Aligned_cols=44 Identities=27% Similarity=0.329 Sum_probs=24.0
Q ss_pred HHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhc------cCCCEEEECCCCC
Q 037843 26 YNLCQYMGELELELSQGYHFEVYRNDELTVAELKR------KKPRGVVISPGPG 73 (203)
Q Consensus 26 ~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~------~~~dgiil~GG~~ 73 (203)
..+.+.+++...+ .|+.++....+ .+.++.+ .++|||||=+|.-
T Consensus 32 ~di~~~l~~~a~~--~g~~v~~~QSN--~EgeLId~Ih~a~~~~dgiiINpgA~ 81 (151)
T 3u80_A 32 DTLRKLCAEWGKD--LGLEVEVRQTD--DEAEMVRWMHQAADEKTPVVMNPAAF 81 (151)
T ss_dssp HHHHHHHHHHHHH--TTEEEEEEECS--CHHHHHHHHHHHHHHTCCEEEECTTC
T ss_pred HHHHHHHHHHHHH--cCCEEEEEecC--CHHHHHHHHHHhhhcCcEEEECcchh
Confidence 3344555443221 28888877654 2333221 1579999977643
No 296
>1uqr_A 3-dehydroquinate dehydratase; shikimate pathway, aromatic amino acid biosynthesis, lyase; 1.7A {Actinobacillus pleuropneumoniae} SCOP: c.23.13.1
Probab=48.23 E-value=74 Score=22.89 Aligned_cols=29 Identities=21% Similarity=0.575 Sum_probs=18.4
Q ss_pred CceEEEEeCCcccHHHHh----c--cCCCEEEECCCC
Q 037843 42 GYHFEVYRNDELTVAELK----R--KKPRGVVISPGP 72 (203)
Q Consensus 42 g~~~~v~~~~~~~~~~l~----~--~~~dgiil~GG~ 72 (203)
|+.++....+ .+.++. . .++|||||=+|.
T Consensus 43 g~~l~~~QSN--~EGeLId~Ih~a~~~~dgiIINpgA 77 (154)
T 1uqr_A 43 GYELDYFQAN--GEESLINRIHQAFQNTDFIIINPGA 77 (154)
T ss_dssp TCEEEEEECS--SHHHHHHHHHHTTTTCCEEEEECTT
T ss_pred CCEEEEEeeC--CHHHHHHHHHHhhhcCcEEEECcch
Confidence 8888887654 233332 1 268999996653
No 297
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=47.99 E-value=48 Score=21.23 Aligned_cols=34 Identities=12% Similarity=0.140 Sum_probs=23.6
Q ss_pred CCCCcEEEEeCCchHHHHHHHHHHHhhhhhcCC-ceEEEEeC
Q 037843 10 NDKNPIVVIDNYDSFTYNLCQYMGELELELSQG-YHFEVYRN 50 (203)
Q Consensus 10 ~~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g-~~~~v~~~ 50 (203)
.++++|+|+-. +..-..+.+.+... | .++.++..
T Consensus 3 ~~~~~v~I~G~-G~iG~~~~~~l~~~------g~~~v~~~~r 37 (118)
T 3ic5_A 3 AMRWNICVVGA-GKIGQMIAALLKTS------SNYSVTVADH 37 (118)
T ss_dssp TTCEEEEEECC-SHHHHHHHHHHHHC------SSEEEEEEES
T ss_pred CCcCeEEEECC-CHHHHHHHHHHHhC------CCceEEEEeC
Confidence 45678999976 44556677888777 7 77766644
No 298
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=47.62 E-value=87 Score=23.60 Aligned_cols=56 Identities=16% Similarity=0.211 Sum_probs=29.8
Q ss_pred CCCCcEEEEeC--C--chHHHHHHH----HHHHhhhhhcCCceEEEEeCC-cccH-------HHHhccCCCEEEECCC
Q 037843 10 NDKNPIVVIDN--Y--DSFTYNLCQ----YMGELELELSQGYHFEVYRND-ELTV-------AELKRKKPRGVVISPG 71 (203)
Q Consensus 10 ~~~~~i~iid~--~--~~~~~~l~~----~l~~~~~~~~~g~~~~v~~~~-~~~~-------~~l~~~~~dgiil~GG 71 (203)
....+|.++-. . +.|...+.+ ++++. |+.+.+...+ ..+. +.+...++||||+.+.
T Consensus 3 ~~~~~Ig~v~~~~~~~~~~~~~~~~gi~~~a~~~------g~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~ 74 (289)
T 3brs_A 3 LKQYYMICIPKVLDDSSDFWSVLVEGAQMAAKEY------EIKLEFMAPEKEEDYLVQNELIEEAIKRKPDVILLAAA 74 (289)
T ss_dssp --CCEEEEECSCCCSSSHHHHHHHHHHHHHHHHH------TCEEEECCCSSTTCHHHHHHHHHHHHHTCCSEEEECCS
T ss_pred CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHc------CCEEEEecCCCCCCHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 33467777732 3 344444444 44444 8888776542 1221 2223347999999764
No 299
>3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase, NOS, INOS, CALM binding, FAD, FMN, heme, iron, metal-binding, NADP, oxidore phosphoprotein; HET: FMN; 2.50A {Homo sapiens}
Probab=47.46 E-value=36 Score=25.93 Aligned_cols=52 Identities=15% Similarity=0.198 Sum_probs=32.9
Q ss_pred CCcEEEE-eCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEE
Q 037843 12 KNPIVVI-DNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVI 68 (203)
Q Consensus 12 ~~~i~ii-d~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil 68 (203)
.++|+|+ ....+++..+++.+.+.. ..|+.+.++..++.+.+++. +++.+||
T Consensus 40 ~~kv~IlYgS~tGnte~~A~~La~~l---~~g~~v~v~~l~~~~~~~l~--~~~~vI~ 92 (219)
T 3hr4_A 40 RVRVTILFATETGKSEALAWDLGALF---SCAFNPKVVCMDKYRLSCLE--EERLLLV 92 (219)
T ss_dssp SCEEEEEEECSSSHHHHHHHHHHHHH---TTTSEEEEEEGGGCCGGGGG--TCSEEEE
T ss_pred CCcEEEEEECCchHHHHHHHHHHHHH---HcCCCeEEEEcccCCHhHhc--cCCeEEE
Confidence 3456555 555567777877776542 23788888776555556665 4577776
No 300
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=47.38 E-value=39 Score=29.83 Aligned_cols=81 Identities=14% Similarity=0.014 Sum_probs=47.3
Q ss_pred CCcEEEE----eCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHh----ccCCCEEEECCCCCCCC-CcchHH
Q 037843 12 KNPIVVI----DNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELK----RKKPRGVVISPGPGAPQ-ESGISF 82 (203)
Q Consensus 12 ~~~i~ii----d~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~----~~~~dgiil~GG~~~~~-~~~~~~ 82 (203)
+++|++. |.++--...+...|+.. |++|..+-.+ .+.+++. ..++|.|.+|+...... ....+.
T Consensus 98 ~~kVLlatv~GD~HdiG~~iva~~L~~~------G~eVi~LG~~-vP~e~iv~aa~~~~~diVgLS~l~t~~~~~m~~~i 170 (579)
T 3bul_A 98 NGKMVIATVKGDVHDIGKNIVGVVLQCN------NYEIVDLGVM-VPAEKILRTAKEVNADLIGLSGLITPSLDEMVNVA 170 (579)
T ss_dssp SCEEEEEEBTTCCCCHHHHHHHHHHHTT------TCEEEECCSS-BCHHHHHHHHHHHTCSEEEEECCSTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHHHC------CCEEEECCCC-CCHHHHHHHHHHcCCCEEEEEecCCCCHHHHHHHH
Confidence 5677666 44443344555677777 9998876554 5555553 23899999987542110 111234
Q ss_pred HHHHHhCCCCceeehhH
Q 037843 83 RTVLELGPTMPLFCMGL 99 (203)
Q Consensus 83 ~~i~~~~~~~PilClG~ 99 (203)
+.+++...++||++.|.
T Consensus 171 ~~Lr~~g~~i~ViVGGa 187 (579)
T 3bul_A 171 KEMERQGFTIPLLIGGA 187 (579)
T ss_dssp HHHHHTTCCSCEEEEST
T ss_pred HHHHHcCCCCeEEEEcc
Confidence 44555455789984443
No 301
>3d7n_A Flavodoxin, WRBA-like protein; structural genomics, PSI, MCS protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens}
Probab=47.36 E-value=14 Score=27.18 Aligned_cols=53 Identities=15% Similarity=0.169 Sum_probs=28.2
Q ss_pred CCcEEEEe-CCchHHHHHHHHHHHhhhhhcCCceEEEEeC-Cccc---HHHHhccCCCEEEECCCC
Q 037843 12 KNPIVVID-NYDSFTYNLCQYMGELELELSQGYHFEVYRN-DELT---VAELKRKKPRGVVISPGP 72 (203)
Q Consensus 12 ~~~i~iid-~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~-~~~~---~~~l~~~~~dgiil~GG~ 72 (203)
|++|+||- ...+++..+++++.+.. +....-+.. ++.+ .+++. ++|+||| |.|
T Consensus 6 ~~kiliiy~S~~GnT~~lA~~ia~~l-----~~~~~~v~~~~~~~~~~~~~l~--~~D~ii~-gsP 63 (193)
T 3d7n_A 6 SSNTVVVYHSGYGHTHRMAEAVAEGA-----EATLHAIDAEGNLSEDGWAALD--AADAIIF-GTP 63 (193)
T ss_dssp CCCEEEEECCSSSHHHHHHHHHHHHH-----TCEEEECCTTSCCCHHHHHHHH--HCSEEEE-EEE
T ss_pred CCEEEEEEECCChHHHHHHHHHHHHh-----hhcceEeeecCCCCHhHHHHHH--HCCEEEE-EeC
Confidence 56788874 23456777777775532 222211211 1122 24454 5799999 554
No 302
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=46.46 E-value=91 Score=23.40 Aligned_cols=53 Identities=21% Similarity=0.362 Sum_probs=27.8
Q ss_pred CcEEEEe--CCchHHHHHH----HHHHHhhhhhcCCceEEEEeCCccc------HHHHhccCCCEEEECCC
Q 037843 13 NPIVVID--NYDSFTYNLC----QYMGELELELSQGYHFEVYRNDELT------VAELKRKKPRGVVISPG 71 (203)
Q Consensus 13 ~~i~iid--~~~~~~~~l~----~~l~~~~~~~~~g~~~~v~~~~~~~------~~~l~~~~~dgiil~GG 71 (203)
++|.++- ....|...+. +.+++. |+.+.+....... .+.+...++||||+.+.
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~~------g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 66 (271)
T 2dri_A 2 DTIALVVSTLNNPFFVSLKDGAQKEADKL------GYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPT 66 (271)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHH------TCEEEEEECTTCHHHHHHHHHHHTTTTEEEEEECCS
T ss_pred cEEEEEecCCCCHHHHHHHHHHHHHHHHc------CcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 4565552 3333433344 444555 8888776543111 11222347899999653
No 303
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=46.46 E-value=94 Score=23.61 Aligned_cols=58 Identities=19% Similarity=0.272 Sum_probs=29.6
Q ss_pred CCcEEEE--eCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCccc------HHHHhccCCCEEEECCC
Q 037843 12 KNPIVVI--DNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELT------VAELKRKKPRGVVISPG 71 (203)
Q Consensus 12 ~~~i~ii--d~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~------~~~l~~~~~dgiil~GG 71 (203)
..+|.+| +..+.|...+.+.+++... ..|+.+.+....... .+.+...++||||+.+.
T Consensus 16 s~~Igvi~~~~~~~~~~~~~~gi~~~a~--~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 81 (289)
T 2fep_A 16 TTTVGVIIPDISSIFYSELARGIEDIAT--MYKYNIILSNSDQNMEKELHLLNTMLGKQVDGIVFMGG 81 (289)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHH--HTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred CCeEEEEeCCCCCchHHHHHHHHHHHHH--HcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecC
Confidence 3567666 3334444444443333211 118988776543111 12233347999999774
No 304
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=46.45 E-value=1.2e+02 Score=25.79 Aligned_cols=55 Identities=13% Similarity=0.042 Sum_probs=37.4
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcc-cHHHHhc--------------cCCCEEEECCCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDEL-TVAELKR--------------KKPRGVVISPGP 72 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~-~~~~l~~--------------~~~dgiil~GG~ 72 (203)
.++|+||--+.+-...++++|.+. |+.|........ ..+.+.. .++|.||+|+|.
T Consensus 22 ~~~v~viGiG~sG~s~~A~~l~~~------G~~V~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~Spgi 91 (494)
T 4hv4_A 22 VRHIHFVGIGGAGMGGIAEVLANE------GYQISGSDLAPNSVTQHLTALGAQIYFHHRPENVLDASVVVVSTAI 91 (494)
T ss_dssp CCEEEEETTTSTTHHHHHHHHHHT------TCEEEEECSSCCHHHHHHHHTTCEEESSCCGGGGTTCSEEEECTTS
T ss_pred CCEEEEEEEcHhhHHHHHHHHHhC------CCeEEEEECCCCHHHHHHHHCCCEEECCCCHHHcCCCCEEEECCCC
Confidence 478999998876666689999999 999887643211 1122211 157899998875
No 305
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=46.36 E-value=95 Score=23.58 Aligned_cols=59 Identities=10% Similarity=0.261 Sum_probs=30.3
Q ss_pred CCCcEEEEe--CCchHHHHHHHHHHHhhhhhcCCceEEEEeCCccc------HHHHhccCCCEEEECCC
Q 037843 11 DKNPIVVID--NYDSFTYNLCQYMGELELELSQGYHFEVYRNDELT------VAELKRKKPRGVVISPG 71 (203)
Q Consensus 11 ~~~~i~iid--~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~------~~~l~~~~~dgiil~GG 71 (203)
...+|.+|- ....|...+.+.+++... ..|+.+.+...+... .+.+...++||||+.+.
T Consensus 19 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~ 85 (293)
T 2iks_A 19 RTRSIGLVIPDLENTSYTRIANYLERQAR--QRGYQLLIACSEDQPDNEMRCIEHLLQRQVDAIIVSTS 85 (293)
T ss_dssp CCCEEEEEESCSCSHHHHHHHHHHHHHHH--HTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred CCcEEEEEeCCCcCcHHHHHHHHHHHHHH--HCCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 345677663 333444444443333211 118988776543111 12223347999999765
No 306
>2r48_A Phosphotransferase system (PTS) mannose-specific iibca component; PTS system, fructose specific IIB PFAM02379, PSI-2, MCSG; 1.80A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=45.73 E-value=66 Score=21.57 Aligned_cols=54 Identities=17% Similarity=0.307 Sum_probs=32.2
Q ss_pred cEEEEeCCchH--HHHHHHHHHHhhhhhcCCceEEEE--eC----CcccHHHHhccCCCEEEECCC
Q 037843 14 PIVVIDNYDSF--TYNLCQYMGELELELSQGYHFEVY--RN----DELTVAELKRKKPRGVVISPG 71 (203)
Q Consensus 14 ~i~iid~~~~~--~~~l~~~l~~~~~~~~~g~~~~v~--~~----~~~~~~~l~~~~~dgiil~GG 71 (203)
-|+|..+-.+. +++..+.|+...++. |+++.+- -. +..+.+++.. .|+|||.+.
T Consensus 5 ivaVTaCptGiAhTymAaeaL~~aA~~~--G~~ikVEtqGs~G~~n~Lt~~~I~~--Ad~VIiA~d 66 (106)
T 2r48_A 5 LLAITSCPNGIAHTYMAAENLQKAADRL--GVSIKVETQGGIGVENKLTEEEIRE--ADAIIIAAD 66 (106)
T ss_dssp EEEEEECSSCSHHHHHHHHHHHHHHHHH--TCEEEEEEEETTEEESCCCHHHHHH--CSEEEEEES
T ss_pred EEEEecCCCcHHHHHHHHHHHHHHHHHC--CCeEEEEecCCCCccCCCCHHHHHh--CCEEEEEeC
Confidence 34566665554 556556665543333 7777651 11 1367788885 599999765
No 307
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=45.12 E-value=52 Score=22.21 Aligned_cols=33 Identities=12% Similarity=0.119 Sum_probs=25.6
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRND 51 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~ 51 (203)
+++|+|+-.+ .+...+.+.|.+. |.++.++..+
T Consensus 6 ~~~v~I~G~G-~iG~~la~~L~~~------g~~V~~id~~ 38 (141)
T 3llv_A 6 RYEYIVIGSE-AAGVGLVRELTAA------GKKVLAVDKS 38 (141)
T ss_dssp CCSEEEECCS-HHHHHHHHHHHHT------TCCEEEEESC
T ss_pred CCEEEEECCC-HHHHHHHHHHHHC------CCeEEEEECC
Confidence 5679999874 4667788888888 8998887654
No 308
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=44.89 E-value=47 Score=23.67 Aligned_cols=72 Identities=10% Similarity=-0.005 Sum_probs=44.2
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGISFRTVLELGPT 91 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~~~~~ 91 (203)
..+|+|+|........+.+.|+.. |+.+....... +.+ ...+|.||+-=. .|...+.+...++.....
T Consensus 12 ~~~iLivdd~~~~~~~l~~~L~~~------g~~v~~~~~~~---~al-~~~~dlvl~D~~--mp~~~g~l~~~~~~~~~~ 79 (196)
T 1qo0_D 12 ELQVLVLNPPGEVSDALVLQLIRI------GCSVRQCWPPP---EAF-DVPVDVVFTSIF--QNRHHDEIAALLAAGTPR 79 (196)
T ss_dssp GCEEEEESCTTHHHHHHHHHHHHH------TCEEEEECSCC---SSC-SSCCSEEEEECC--SSTHHHHHHHHHHHSCTT
T ss_pred CCeEEEEcCChhHHHHHHHHHHHc------CCeEEEecCch---hhC-CCCCCEEEEeCC--CCccchHHHHHHhccCCC
Confidence 468999998887788888889887 88876543221 122 236898887211 122223344445443367
Q ss_pred Ccee
Q 037843 92 MPLF 95 (203)
Q Consensus 92 ~Pil 95 (203)
.|++
T Consensus 80 ~~ii 83 (196)
T 1qo0_D 80 TTLV 83 (196)
T ss_dssp CEEE
T ss_pred CCEE
Confidence 8888
No 309
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=44.61 E-value=1e+02 Score=23.34 Aligned_cols=30 Identities=27% Similarity=0.396 Sum_probs=17.7
Q ss_pred CceEEEEeCCccc------HHHHhccCCCEEEECCC
Q 037843 42 GYHFEVYRNDELT------VAELKRKKPRGVVISPG 71 (203)
Q Consensus 42 g~~~~v~~~~~~~------~~~l~~~~~dgiil~GG 71 (203)
|+.+.+....... .+.+...++||||+.+.
T Consensus 31 g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 66 (283)
T 2ioy_A 31 GYKIIVEDSQNDSSKELSNVEDLIQQKVDVLLINPV 66 (283)
T ss_dssp TCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred CcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 8988776543111 11223347999999653
No 310
>1yob_A Flavodoxin 2, flavodoxin II; alpha-beta fold, non- covalently bound FMN, electron transport; HET: FMN; 2.25A {Azotobacter vinelandii} SCOP: c.23.5.1
Probab=44.02 E-value=33 Score=24.66 Aligned_cols=50 Identities=4% Similarity=0.054 Sum_probs=30.1
Q ss_pred cEEEE-eCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEE
Q 037843 14 PIVVI-DNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVI 68 (203)
Q Consensus 14 ~i~ii-d~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil 68 (203)
+|+|+ -...+++..+++.+.+.. ..+..+++++..+.+.+++. ++|.|||
T Consensus 2 kilI~Y~S~tGnT~~iA~~ia~~l---~~~~~v~~~~~~~~~~~~l~--~~d~iil 52 (179)
T 1yob_A 2 KIGLFFGSNTGKTRKVAKSIKKRF---DDETMSDALNVNRVSAEDFA--QYQFLIL 52 (179)
T ss_dssp CEEEEECCSSSHHHHHHHHHHTTS---CTTTBCCCEEGGGCCHHHHH--TCSEEEE
T ss_pred eEEEEEECCCcHHHHHHHHHHHHh---CCCCceEEEEhhhCCHHHHh--cCCEEEE
Confidence 45555 344567888888876642 11334555554444566666 5799998
No 311
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=43.87 E-value=85 Score=24.82 Aligned_cols=57 Identities=14% Similarity=0.149 Sum_probs=28.1
Q ss_pred CCcEEEEe--CCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccH-------HHHhccCCCEEEECCC
Q 037843 12 KNPIVVID--NYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTV-------AELKRKKPRGVVISPG 71 (203)
Q Consensus 12 ~~~i~iid--~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~-------~~l~~~~~dgiil~GG 71 (203)
..+|.+|- ....|...+.+.+++... ..|+.+.+.... .+. +.+...++||||+.+.
T Consensus 66 s~~Igvi~~~~~~~~~~~~~~gi~~~a~--~~g~~~~~~~~~-~~~~~~~~~~~~l~~~~vdgiI~~~~ 131 (348)
T 3bil_A 66 SNTIGVIVPSLINHYFAAMVTEIQSTAS--KAGLATIITNSN-EDATTMSGSLEFLTSHGVDGIICVPN 131 (348)
T ss_dssp --CEEEEESCSSSHHHHHHHHHHHHHHH--HTTCCEEEEECT-TCHHHHHHHHHHHHHTTCSCEEECCC
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHH--HcCCEEEEEeCC-CCHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 35676663 233343334433333211 118888776543 121 1222347999999764
No 312
>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}
Probab=43.75 E-value=50 Score=25.99 Aligned_cols=32 Identities=16% Similarity=0.083 Sum_probs=15.2
Q ss_pred cccccCCCCCcEEEEeCCchHHHHHHHHHHHh
Q 037843 4 VLKLSKNDKNPIVVIDNYDSFTYNLCQYMGEL 35 (203)
Q Consensus 4 ~~~~~~~~~~~i~iid~~~~~~~~l~~~l~~~ 35 (203)
++.+|...+++|+|.-..+..-..+++.|.+.
T Consensus 16 ~n~~~~~~~~~vlVtGatG~iG~~l~~~L~~~ 47 (346)
T 4egb_A 16 ENLYFQSNAMNILVTGGAGFIGSNFVHYMLQS 47 (346)
T ss_dssp --------CEEEEEETTTSHHHHHHHHHHHHH
T ss_pred cccccccCCCeEEEECCccHHHHHHHHHHHhh
Confidence 34445444566776665443445677777776
No 313
>1obo_A Flavodoxin; electron transfer, flavoprotein, electron transport; HET: FMN; 1.2A {Anabaena SP} SCOP: c.23.5.1 PDB: 2v5v_A* 1dx9_A 1rcf_A* 1flv_A* 1obv_A* 2v5u_A* 1ftg_A 1qhe_A 2kqu_A 3esy_A* 3esz_A* 3esx_A*
Probab=42.97 E-value=49 Score=23.24 Aligned_cols=50 Identities=10% Similarity=0.040 Sum_probs=29.7
Q ss_pred CcEEEE-eCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEE
Q 037843 13 NPIVVI-DNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVI 68 (203)
Q Consensus 13 ~~i~ii-d~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil 68 (203)
++|+|+ -...+++..+++.+.+... ...+++++....+.+++. ++|.|||
T Consensus 2 mkilIiY~S~tGnT~~vA~~ia~~l~----~~~v~~~~~~~~~~~~l~--~~d~ii~ 52 (169)
T 1obo_A 2 KKIGLFYGTQTGKTESVAEIIRDEFG----NDVVTLHDVSQAEVTDLN--DYQYLII 52 (169)
T ss_dssp CSEEEEECCSSSHHHHHHHHHHHHHC----TTTEEEEETTTCCGGGGG--GCSEEEE
T ss_pred CeEEEEEECCCchHHHHHHHHHHHhC----cCCcEEEEcccCCHHHHh--hCCEEEE
Confidence 356666 3344677788887766421 224566665433444555 5799999
No 314
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=42.54 E-value=29 Score=27.97 Aligned_cols=57 Identities=18% Similarity=0.089 Sum_probs=30.8
Q ss_pred CCcEEEEeC-CchH---HHHHHHHHHHhhhhhcCCceEEEEeCCcc-cHHH----HhccCCCEEEECCCCCC
Q 037843 12 KNPIVVIDN-YDSF---TYNLCQYMGELELELSQGYHFEVYRNDEL-TVAE----LKRKKPRGVVISPGPGA 74 (203)
Q Consensus 12 ~~~i~iid~-~~~~---~~~l~~~l~~~~~~~~~g~~~~v~~~~~~-~~~~----l~~~~~dgiil~GG~~~ 74 (203)
|++++||-| .++- ...+.++|++. |+++.+...... ...+ ....++|.||+.||.|.
T Consensus 29 ~~~~~vi~Np~sg~~~~~~~i~~~l~~~------g~~~~~~~t~~~~~~~~~~~~~~~~~~d~vvv~GGDGT 94 (332)
T 2bon_A 29 FPASLLILNGKSTDNLPLREAIMLLREE------GMTIHVRVTWEKGDAARYVEEARKFGVATVIAGGGDGT 94 (332)
T ss_dssp -CCEEEEECSSSTTCHHHHHHHHHHHTT------TCCEEEEECCSTTHHHHHHHHHHHHTCSEEEEEESHHH
T ss_pred cceEEEEECCCCCCCchHHHHHHHHHHc------CCcEEEEEecCcchHHHHHHHHHhcCCCEEEEEccchH
Confidence 456766644 2221 22345556655 888877653311 1111 22236899999999654
No 315
>3p0r_A Azoreductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.80A {Bacillus anthracis}
Probab=42.23 E-value=47 Score=24.73 Aligned_cols=39 Identities=5% Similarity=-0.023 Sum_probs=24.0
Q ss_pred CCCcEEEEeCC-----chHHHHHHHHHHHhhhhhcCCceEEEEe
Q 037843 11 DKNPIVVIDNY-----DSFTYNLCQYMGELELELSQGYHFEVYR 49 (203)
Q Consensus 11 ~~~~i~iid~~-----~~~~~~l~~~l~~~~~~~~~g~~~~v~~ 49 (203)
||++|++|... .|++..+.+++.+...+...|.+++++.
T Consensus 3 mM~kiLiI~gSpr~~~~S~s~~l~~~~~~~~~~~~~g~ev~~~d 46 (211)
T 3p0r_A 3 AMTKVLFVKANNRPAEQAVSVKLYEAFLASYKEAHPNDTVVELD 46 (211)
T ss_dssp -CCEEEEEECCCSCTTTCHHHHHHHHHHHHHHHHCTTSEEEEEE
T ss_pred ccCEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 56789999533 4677777766655433333377887764
No 316
>1gtz_A 3-dehydroquinate dehydratase; lyase, type II dehydroquinase, shikimate pathway, dodecameric quaternary structure; HET: DHK; 1.6A {Streptomyces coelicolor} SCOP: c.23.13.1 PDB: 2bt4_A* 1v1j_A* 2cjf_A* 1d0i_A 1gu0_A 1gu1_A*
Probab=41.96 E-value=65 Score=23.24 Aligned_cols=42 Identities=17% Similarity=0.251 Sum_probs=23.0
Q ss_pred HHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhc------cCCCEEEECCCC
Q 037843 27 NLCQYMGELELELSQGYHFEVYRNDELTVAELKR------KKPRGVVISPGP 72 (203)
Q Consensus 27 ~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~------~~~dgiil~GG~ 72 (203)
.+.+.+++... ..|+.++....+ .+.++.+ .++|||||=+|.
T Consensus 35 di~~~l~~~a~--~~g~~v~~~QSN--~EGeLId~Ih~a~~~~dgiIINpgA 82 (156)
T 1gtz_A 35 DVEALCVKAAA--AHGGTVDFRQSN--HEGELVDWIHEARLNHCGIVINPAA 82 (156)
T ss_dssp HHHHHHHHHHH--TTTCCEEEEECS--CHHHHHHHHHHHHHHCSEEEEECTT
T ss_pred HHHHHHHHHHH--HcCCEEEEEeeC--CHHHHHHHHHHhhhcCcEEEECchh
Confidence 34444544321 228888877654 2333221 158999996653
No 317
>1zgh_A Methionyl-tRNA formyltransferase; southeast collaboratory FO structural genomics, PSI, protein structure initiative, secsg; 2.05A {Clostridium thermocellum} SCOP: b.46.1.1 c.65.1.1
Probab=41.82 E-value=59 Score=25.49 Aligned_cols=55 Identities=18% Similarity=0.205 Sum_probs=34.1
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCC-cccHHHHhccCCCEEEECC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRND-ELTVAELKRKKPRGVVISP 70 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~-~~~~~~l~~~~~dgiil~G 70 (203)
+++|+++.....|.....+...++ ..+..+.++... ....+.+...++|.+|+.|
T Consensus 30 ~m~ill~~~~~~~~~l~q~l~~~l----~~~h~V~~~~~~~~~~~~~L~~~~pDliv~~~ 85 (260)
T 1zgh_A 30 LMNIIIATTKSWNIKNAQKFKKEN----ESKYNTTIITNKDELTFEKVKLINPEYILFPH 85 (260)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHT----TTTEEEEEECSGGGCCHHHHHHHCCSEEEESS
T ss_pred ceEEEEECChHHHHHHHHHHHHHh----cccCceEEEeCCCHHHHHHHHhcCCCEEEEec
Confidence 467888877666655555544444 125677666432 2345667767899888854
No 318
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=41.61 E-value=1.1e+02 Score=22.86 Aligned_cols=57 Identities=16% Similarity=0.212 Sum_probs=28.2
Q ss_pred CcEEEEe--CCchHHHHHHHHHHHhhhhhcCCceEEEEeCCccc------HHHHhccCCCEEEECCC
Q 037843 13 NPIVVID--NYDSFTYNLCQYMGELELELSQGYHFEVYRNDELT------VAELKRKKPRGVVISPG 71 (203)
Q Consensus 13 ~~i~iid--~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~------~~~l~~~~~dgiil~GG 71 (203)
.+|.+|- ..+.|...+.+.+++... ..|+.+.+....... .+.+...++||||+.+.
T Consensus 4 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~ 68 (275)
T 3d8u_A 4 YSIALIIPSLFEKACAHFLPSFQQALN--KAGYQLLLGYSDYSIEQEEKLLSTFLESRPAGVVLFGS 68 (275)
T ss_dssp CEEEEEESCSSCHHHHHHHHHHHHHHH--HTSCEECCEECTTCHHHHHHHHHHHHTSCCCCEEEESS
T ss_pred eEEEEEeCCCccccHHHHHHHHHHHHH--HCCCEEEEEcCCCCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 4566663 233343344443333211 118887766543111 12233347999999764
No 319
>3h11_A CAsp8 and FADD-like apoptosis regulator; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} PDB: 3h13_A
Probab=41.45 E-value=37 Score=26.82 Aligned_cols=42 Identities=21% Similarity=0.256 Sum_probs=29.7
Q ss_pred ccccccCCCCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeC
Q 037843 3 EVLKLSKNDKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRN 50 (203)
Q Consensus 3 ~~~~~~~~~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~ 50 (203)
+.+++..+.+-..+||++.+.-...|.+.|+.+ |..|.+...
T Consensus 34 ~~Y~m~~~~rG~~LIinn~~~D~~~L~~~f~~L------gF~V~~~~d 75 (272)
T 3h11_A 34 ERYKMKSKPLGICLIIDCIGNETELLRDTFTSL------GYEVQKFLH 75 (272)
T ss_dssp CBCCCCCSSSEEEEEEESSCCCCSHHHHHHHHH------TEEEEEEES
T ss_pred ccCCCCCCcceEEEEECCchHHHHHHHHHHHHC------CCEEEEeeC
Confidence 445554443444678887654467899999999 999988764
No 320
>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*
Probab=40.80 E-value=59 Score=26.51 Aligned_cols=51 Identities=10% Similarity=0.016 Sum_probs=29.7
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhc-cCCCEEEEC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKR-KKPRGVVIS 69 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~-~~~dgiil~ 69 (203)
|+||++.+..+.....+.++++.. |+++...+.. .+.+.+.. .++|+|++.
T Consensus 1 Mmki~~~~~~~~~~~~~~~~~~~~------~~~v~~~~~~-~~~~~~~~~~~~d~li~~ 52 (343)
T 2yq5_A 1 MTKIAMYNVSPIEVPYIEDWAKKN------DVEIKTTDQA-LTSATVDLAEGCSSVSLK 52 (343)
T ss_dssp -CEEEEESCCGGGHHHHHHHHHHH------TCEEEEESSC-CSTTGGGGGTTCSEEEEC
T ss_pred CceEEEEecCcccHHHHHHHHHhC------CeEEEECCCC-CCHHHHHHhcCCcEEEEc
Confidence 478999886665566677777777 7777655421 22111111 257777774
No 321
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=40.61 E-value=31 Score=28.80 Aligned_cols=34 Identities=9% Similarity=0.113 Sum_probs=24.0
Q ss_pred CCC-CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEe
Q 037843 9 KND-KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYR 49 (203)
Q Consensus 9 ~~~-~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~ 49 (203)
|.| +++|+|+.. +.....+.+.++++ |+++.++.
T Consensus 2 n~m~~~kiLI~g~-g~~a~~i~~aa~~~------G~~~v~v~ 36 (446)
T 3ouz_A 2 NAMEIKSILIANR-GEIALRALRTIKEM------GKKAICVY 36 (446)
T ss_dssp CTTCCCEEEECCC-HHHHHHHHHHHHHT------TCEEEEEE
T ss_pred CccccceEEEECC-CHHHHHHHHHHHHc------CCEEEEEE
Confidence 444 456777764 44567788899998 99987763
No 322
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=40.55 E-value=57 Score=21.54 Aligned_cols=74 Identities=14% Similarity=0.146 Sum_probs=36.9
Q ss_pred CcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCCC
Q 037843 13 NPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELGPT 91 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~~~ 91 (203)
++|+|+|....+...+.+.++. +..+..........+.+....+|.||+-=. .+...+ .+.+.+++....
T Consensus 2 ~~Ilivdd~~~~~~~l~~~l~~-------~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~--lp~~~g~~~~~~l~~~~~~ 72 (139)
T 2jk1_A 2 PAILLVDDEPHSLAAMKLALED-------DFDVLTAQGAEAAIAILEEEWVQVIICDQR--MPGRTGVDFLTEVRERWPE 72 (139)
T ss_dssp CEEEEECSSHHHHHHHHHHHTT-------TSCEEEESSHHHHHHHHHHSCEEEEEEESC--CSSSCHHHHHHHHHHHCTT
T ss_pred CeEEEEcCCHHHHHHHHHHhhc-------CceEEEcCCHHHHHHHHhcCCCCEEEEeCC--CCCCcHHHHHHHHHHhCCC
Confidence 4799999876555556655532 344433221101112233336788887211 122222 234555554456
Q ss_pred Ccee
Q 037843 92 MPLF 95 (203)
Q Consensus 92 ~Pil 95 (203)
.|++
T Consensus 73 ~~ii 76 (139)
T 2jk1_A 73 TVRI 76 (139)
T ss_dssp SEEE
T ss_pred CcEE
Confidence 7877
No 323
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=40.38 E-value=68 Score=24.93 Aligned_cols=37 Identities=11% Similarity=0.131 Sum_probs=22.8
Q ss_pred CCcEEEEeCC---chHHHHHHHHHHHhhhhhcCCceEEEEeC
Q 037843 12 KNPIVVIDNY---DSFTYNLCQYMGELELELSQGYHFEVYRN 50 (203)
Q Consensus 12 ~~~i~iid~~---~~~~~~l~~~l~~~~~~~~~g~~~~v~~~ 50 (203)
|++|+||... .|++..+.+.+.+...+ .|.+++++..
T Consensus 2 MmkiLiI~gSpr~~s~t~~la~~~~~~l~~--~g~eV~~~dL 41 (273)
T 1d4a_A 2 GRRALIVLAHSERTSFNYAMKEAAAAALKK--KGWEVVESDL 41 (273)
T ss_dssp CCEEEEEECCSCTTSHHHHHHHHHHHHHHH--TTCEEEEEET
T ss_pred CCEEEEEEeCCCCccHHHHHHHHHHHHHHh--CCCeEEEEEc
Confidence 4689999654 35677777665433211 2788887764
No 324
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=39.66 E-value=86 Score=24.43 Aligned_cols=55 Identities=7% Similarity=0.106 Sum_probs=30.1
Q ss_pred CCCCcEEEEe--CCchHHHHHH----HHHHHhhhhhcCCceEEEEeCCcccH-------HHHhccC--CCEEEECCC
Q 037843 10 NDKNPIVVID--NYDSFTYNLC----QYMGELELELSQGYHFEVYRNDELTV-------AELKRKK--PRGVVISPG 71 (203)
Q Consensus 10 ~~~~~i~iid--~~~~~~~~l~----~~l~~~~~~~~~g~~~~v~~~~~~~~-------~~l~~~~--~dgiil~GG 71 (203)
....+|.+|- ....|...+. +++++. |+.+.+.... .+. +.+...+ +||||+.+.
T Consensus 3 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~------g~~l~~~~~~-~~~~~~~~~i~~l~~~~~~vdgiIi~~~ 72 (332)
T 2rjo_A 3 LGQTTLACSFRSLTNPYYTAFNKGAQSFAKSV------GLPYVPLTTE-GSSEKGIADIRALLQKTGGNLVLNVDPN 72 (332)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHHHHHHHHHHH------TCCEEEEECT-TCHHHHHHHHHHHHHHTTTCEEEEECCS
T ss_pred CCccEEEEEecCCCcHHHHHHHHHHHHHHHHc------CCEEEEecCC-CCHHHHHHHHHHHHHCCCCCCEEEEeCC
Confidence 3446776663 3333433333 444555 8888776543 221 1222347 999999764
No 325
>2r47_A Uncharacterized protein MTH_862; unknown function, structural genomics, APC5901, PSI-2; 1.88A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=39.22 E-value=4.9 Score=29.20 Aligned_cols=36 Identities=17% Similarity=0.103 Sum_probs=25.2
Q ss_pred CCCEEEECCCCCCCCC---cchHHHHHHHh-CCCCcee--eh
Q 037843 62 KPRGVVISPGPGAPQE---SGISFRTVLEL-GPTMPLF--CM 97 (203)
Q Consensus 62 ~~dgiil~GG~~~~~~---~~~~~~~i~~~-~~~~Pil--Cl 97 (203)
++|.|||.||-..|.- .+...++|.++ .....|+ |+
T Consensus 84 ~~D~vVllGGLAMPk~~v~~e~v~~li~ki~~~~~kiiGvCF 125 (157)
T 2r47_A 84 NVDVLVLLGGLSMPGIGSDIEDVKKLVEDALEEGGELMGLCY 125 (157)
T ss_dssp CEEEEEEEGGGGSTTTSCCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCEEEEeccccCCCCCCCHHHHHHHHHHhhcCCCCEEEEEh
Confidence 6899999999887763 34456777775 3345577 85
No 326
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=39.21 E-value=1.5e+02 Score=23.84 Aligned_cols=56 Identities=11% Similarity=0.152 Sum_probs=32.4
Q ss_pred CCcEEEEe-CCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhc--cCCCEEEEC
Q 037843 12 KNPIVVID-NYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKR--KKPRGVVIS 69 (203)
Q Consensus 12 ~~~i~iid-~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~--~~~dgiil~ 69 (203)
.++|+|+- ...+++..+++.+.+... ..|+.++++.....+..++.. .++|+|||.
T Consensus 252 ~~kv~i~y~S~~Gnt~~lA~~i~~~l~--~~g~~v~~~~~~~~~~~~~~~~~~~~d~ii~g 310 (402)
T 1e5d_A 252 TNKVVIFYDSMWHSTEKMARVLAESFR--DEGCTVKLMWCKACHHSQIMSEISDAGAVIVG 310 (402)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHH--HTTCEEEEEETTTSCHHHHHHHHHTCSEEEEE
T ss_pred CCcEEEEEECCChhHHHHHHHHHHHHH--hCCCeEEEEECCCCCHHHHHHHHHHCCEEEEE
Confidence 46777763 334566666665554321 127788887765444544421 268999993
No 327
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=39.04 E-value=1.2e+02 Score=22.87 Aligned_cols=57 Identities=12% Similarity=0.107 Sum_probs=27.7
Q ss_pred CcEEEEe--CCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccH-------HHHhccCCCEEEECCC
Q 037843 13 NPIVVID--NYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTV-------AELKRKKPRGVVISPG 71 (203)
Q Consensus 13 ~~i~iid--~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~-------~~l~~~~~dgiil~GG 71 (203)
.+|.++- ....|...+.+.+++...+ .|+.+.++.....+. +.+...++||||+.+.
T Consensus 5 ~~Ig~i~~~~~~~~~~~~~~g~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 70 (303)
T 3d02_A 5 KTVVNISKVDGMPWFNRMGEGVVQAGKE--FNLNASQVGPSSTDAPQQVKIIEDLIARKVDAITIVPN 70 (303)
T ss_dssp EEEEEECSCSSCHHHHHHHHHHHHHHHH--TTEEEEEECCSSSCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred eEEEEEeccCCChHHHHHHHHHHHHHHH--cCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 5676663 3334444444433332111 188876543211222 2223347999999664
No 328
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=38.90 E-value=1.2e+02 Score=23.71 Aligned_cols=54 Identities=9% Similarity=0.148 Sum_probs=29.8
Q ss_pred CCCcEEEEeC--CchHHHHHHH----HHHHhhhhhcCCceEEEEeCCcccH-------HHHhccCCCEEEECCC
Q 037843 11 DKNPIVVIDN--YDSFTYNLCQ----YMGELELELSQGYHFEVYRNDELTV-------AELKRKKPRGVVISPG 71 (203)
Q Consensus 11 ~~~~i~iid~--~~~~~~~l~~----~l~~~~~~~~~g~~~~v~~~~~~~~-------~~l~~~~~dgiil~GG 71 (203)
...+|.+|-. ...|...+.+ ++++. |+.+.+...+ .+. +.+...++||||+.+.
T Consensus 57 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~------g~~~~~~~~~-~~~~~~~~~~~~l~~~~vdgiI~~~~ 123 (340)
T 1qpz_A 57 HTKSIGLLATSSEAAYFAEIIEAVEKNCFQK------GYTLILGNAW-NNLEKQRAYLSMMAQKRVDGLLVMCS 123 (340)
T ss_dssp CCSEEEEEESCSCSHHHHHHHHHHHHHHHHT------TCEEEEEECT-TCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred CCCEEEEEeCCCCChHHHHHHHHHHHHHHHc------CCEEEEEeCC-CCHHHHHHHHHHHHcCCCCEEEEeCC
Confidence 3456777632 3334333443 44444 8888776543 222 2223347999999764
No 329
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=38.83 E-value=20 Score=30.44 Aligned_cols=55 Identities=13% Similarity=0.076 Sum_probs=37.1
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGA 74 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~ 74 (203)
.++|+|+-++ .+...+++.|.+. |.++.++..+....+.+.. ++|..++.|-+.+
T Consensus 3 ~M~iiI~G~G-~vG~~la~~L~~~------~~~v~vId~d~~~~~~~~~-~~~~~~i~Gd~~~ 57 (461)
T 4g65_A 3 AMKIIILGAG-QVGGTLAENLVGE------NNDITIVDKDGDRLRELQD-KYDLRVVNGHASH 57 (461)
T ss_dssp CEEEEEECCS-HHHHHHHHHTCST------TEEEEEEESCHHHHHHHHH-HSSCEEEESCTTC
T ss_pred cCEEEEECCC-HHHHHHHHHHHHC------CCCEEEEECCHHHHHHHHH-hcCcEEEEEcCCC
Confidence 3578888775 5677788888776 8999998766333344433 4677777676544
No 330
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=38.68 E-value=1.7e+02 Score=24.29 Aligned_cols=58 Identities=19% Similarity=0.293 Sum_probs=32.8
Q ss_pred CCcEEEE-eCCchHHHHHHHHHHHhhhhhcCCceEEEEeC-C--cccHHHHhc--cCCCEEEECCCC
Q 037843 12 KNPIVVI-DNYDSFTYNLCQYMGELELELSQGYHFEVYRN-D--ELTVAELKR--KKPRGVVISPGP 72 (203)
Q Consensus 12 ~~~i~ii-d~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~-~--~~~~~~l~~--~~~dgiil~GG~ 72 (203)
..+|+|+ +...++|..+++++.+-.. ..|+.+.++.. + ..+..++.. .++|+||| |+|
T Consensus 265 ~~~v~I~Y~S~yGnTe~mA~~ia~gl~--~~Gv~~~~~~~~d~~~~~~s~i~~~i~~~~~ivl-Gsp 328 (410)
T 4dik_A 265 KGKVTVIYDSMYGFVENVMKKAIDSLK--EKGFTPVVYKFSDEERPAISEILKDIPDSEALIF-GVS 328 (410)
T ss_dssp TTEEEEEEECSSSHHHHHHHHHHHHHH--HTTCEEEEEEECSSCCCCHHHHHHHSTTCSEEEE-EEC
T ss_pred ccceeeEEecccChHHHHHHHHHHHHH--hcCCceEEEEeccCCCCCHHHHHHHHHhCCeEEE-EeC
Confidence 3467666 5545677776666544321 12888766532 1 233455432 37899999 554
No 331
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=37.59 E-value=60 Score=25.19 Aligned_cols=50 Identities=14% Similarity=0.013 Sum_probs=29.6
Q ss_pred CCcEEEEeCCchH--------HHHHHHHHHHhhhhhcCCceEEEEeCCcc--cHHHHhccCCCEEEEC
Q 037843 12 KNPIVVIDNYDSF--------TYNLCQYMGELELELSQGYHFEVYRNDEL--TVAELKRKKPRGVVIS 69 (203)
Q Consensus 12 ~~~i~iid~~~~~--------~~~l~~~l~~~~~~~~~g~~~~v~~~~~~--~~~~l~~~~~dgiil~ 69 (203)
+++|+||--+.|- ...+.+++++. |.++..+..+.. ....+ .++|.++..
T Consensus 3 ~m~v~vl~gg~s~e~~vs~~s~~~v~~al~~~------g~~v~~i~~~~~~~~~~~~--~~~D~v~~~ 62 (307)
T 3r5x_A 3 AMRIGVIMGGVSSEKQVSIMTGNEMIANLDKN------KYEIVPITLNEKMDLIEKA--KDIDFALLA 62 (307)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHHHHHHSCTT------TEEEEEEECSSGGGHHHHT--TTCSEEEEC
T ss_pred CcEEEEEeCCCCcchHhHHHHHHHHHHHHHHC------CCEEEEEcccCchhHHHhc--cCCCEEEEe
Confidence 5689999866432 12344555555 888887765421 12222 268988874
No 332
>4eys_A MCCC family protein; MCCF like, serine peptidase, csgid, structural genomics, NIA national institute of allergy and infectious diseases; HET: AMP; 1.58A {Streptococcus pneumoniae} PDB: 4e94_A*
Probab=37.57 E-value=37 Score=27.75 Aligned_cols=68 Identities=12% Similarity=0.230 Sum_probs=38.5
Q ss_pred CCcEEEEeCCchH--HHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcchHHHHHHH-h
Q 037843 12 KNPIVVIDNYDSF--TYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGISFRTVLE-L 88 (203)
Q Consensus 12 ~~~i~iid~~~~~--~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~-~ 88 (203)
+-+||+|..-... .+.+.|.|..+.. + | -+. ++.|||| |.+..........+.+.+ +
T Consensus 245 ~g~ILfLEdv~E~p~~y~idRmL~qL~~--a-G--------------~f~--~~~Giil-G~~~~~~~~~~~~~vl~~~l 304 (346)
T 4eys_A 245 EGKILLLETSEEKPKPEDFKKMLLTLKD--T-G--------------IFA--VINGLLV-GKPMDETFHDDYKEALLDII 304 (346)
T ss_dssp TTCEEEEECCTTCCCHHHHHHHHHHHHT--T-T--------------GGG--TCSEEEE-ECCGGGTTHHHHHHHHHHHS
T ss_pred CCcEEEEEcCCCCCCHHHHHHHHHHHHH--c-C--------------Ccc--cCCEEEE-ecCCCCCcchhHHHHHHHHH
Confidence 3579988654432 3778888877610 0 1 122 5689999 544321111224556666 3
Q ss_pred CCCCcee---ehhH
Q 037843 89 GPTMPLF---CMGL 99 (203)
Q Consensus 89 ~~~~Pil---ClG~ 99 (203)
..++||+ =+||
T Consensus 305 ~~~iPV~~~~~~GH 318 (346)
T 4eys_A 305 DSNIPIVYNLNVGH 318 (346)
T ss_dssp CTTSCEEEEESCSS
T ss_pred cCCCcEEECCCCCC
Confidence 3389999 4555
No 333
>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*
Probab=37.37 E-value=98 Score=23.77 Aligned_cols=32 Identities=16% Similarity=0.126 Sum_probs=17.8
Q ss_pred cEEEEeC-CchHHHHHHHHHHHhhhhhcCCceEEEEeCC
Q 037843 14 PIVVIDN-YDSFTYNLCQYMGELELELSQGYHFEVYRND 51 (203)
Q Consensus 14 ~i~iid~-~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~ 51 (203)
|++||-- ..+.-..+++.|.+. |++|.+...+
T Consensus 3 K~vlVTGas~GIG~aia~~la~~------Ga~V~~~~~~ 35 (247)
T 3ged_A 3 RGVIVTGGGHGIGKQICLDFLEA------GDKVCFIDID 35 (247)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHT------TCEEEEEESC
T ss_pred CEEEEecCCCHHHHHHHHHHHHC------CCEEEEEeCC
Confidence 4445543 334445566666666 7777665433
No 334
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.60A {Aquifex aeolicus} SCOP: d.159.1.6
Probab=37.21 E-value=33 Score=25.83 Aligned_cols=11 Identities=18% Similarity=0.238 Sum_probs=8.0
Q ss_pred CCCEEEECCCC
Q 037843 62 KPRGVVISPGP 72 (203)
Q Consensus 62 ~~dgiil~GG~ 72 (203)
++|.||++|=-
T Consensus 32 ~~D~vi~~GDl 42 (260)
T 2yvt_A 32 QPDILVVVGNI 42 (260)
T ss_dssp CCSEEEEESCC
T ss_pred CCCEEEECCCC
Confidence 57888887753
No 335
>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A
Probab=37.17 E-value=20 Score=24.86 Aligned_cols=50 Identities=12% Similarity=0.079 Sum_probs=26.3
Q ss_pred CcEEEE-eCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEE
Q 037843 13 NPIVVI-DNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVI 68 (203)
Q Consensus 13 ~~i~ii-d~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil 68 (203)
++|+|+ ....+++..+++.+.+... ..|+++.++.. .+..++. ++|.|||
T Consensus 2 ~ki~I~Y~S~tGnT~~~A~~ia~~l~--~~g~~v~~~~~--~~~~~l~--~~d~vi~ 52 (147)
T 2hna_A 2 ADITLISGSTLGGAEYVAEHLAEKLE--EAGFTTETLHG--PLLEDLP--ASGIWLV 52 (147)
T ss_dssp CSEEEECCTTSCCCHHHHHHHHHHHH--HTTCCEEEECC--TTSCSSC--SEEEEEE
T ss_pred CeEEEEEECCchHHHHHHHHHHHHHH--HCCCceEEecC--CCHHHcc--cCCeEEE
Confidence 456666 3334556666666654321 12777776642 1222332 5688887
No 336
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=36.97 E-value=1.2e+02 Score=22.83 Aligned_cols=62 Identities=13% Similarity=0.187 Sum_probs=29.6
Q ss_pred CCCCCcEEEEe--CCchHHHHHHHHHHHhhhhhcCCceEEEE-eCCc-c-----cHHHHhccCCCEEEECCCC
Q 037843 9 KNDKNPIVVID--NYDSFTYNLCQYMGELELELSQGYHFEVY-RNDE-L-----TVAELKRKKPRGVVISPGP 72 (203)
Q Consensus 9 ~~~~~~i~iid--~~~~~~~~l~~~l~~~~~~~~~g~~~~v~-~~~~-~-----~~~~l~~~~~dgiil~GG~ 72 (203)
++...+|.+|- ..+.|...+.+.+++... ..|+.+.+. .... . ..+.+...++||||+.+..
T Consensus 5 ~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~--~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 75 (290)
T 3clk_A 5 KKSSNVIAAVVSSVRTNFAQQILDGIQEEAH--KNGYNLIIVYSGSADPEEQKHALLTAIERPVMGILLLSIA 75 (290)
T ss_dssp ---CCEEEEECCCCSSSHHHHHHHHHHHHHH--TTTCEEEEEC----------CHHHHHHSSCCSEEEEESCC
T ss_pred cccCCEEEEEeCCCCChHHHHHHHHHHHHHH--HcCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEeccc
Confidence 33446787773 333444444444433311 128888776 4321 1 1233334579999997653
No 337
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=36.89 E-value=80 Score=22.02 Aligned_cols=46 Identities=15% Similarity=0.122 Sum_probs=26.9
Q ss_pred HhccCCCEEEECCCCCCCCCcchHHHHHHH--hCCCCcee--ehhHHHHHHH
Q 037843 58 LKRKKPRGVVISPGPGAPQESGISFRTVLE--LGPTMPLF--CMGLKCIGEA 105 (203)
Q Consensus 58 l~~~~~dgiil~GG~~~~~~~~~~~~~i~~--~~~~~Pil--ClG~Qlla~a 105 (203)
+.+.++|.||.++.++. ....--..||+ ...++|++ =-+..++.++
T Consensus 92 i~~g~i~lVInt~~~~~--~~~~d~~~iRR~Av~~~IP~~T~~~tA~a~~~a 141 (143)
T 2yvq_A 92 IRDGSIDLVINLPNNNT--KFVHDNYVIRRTAVDSGIPLLTNFQVTKLFAEA 141 (143)
T ss_dssp HHTTSCCEEEECCCCCG--GGHHHHHHHHHHHHHTTCCEECSHHHHHHHHHT
T ss_pred HHCCCceEEEECCCCCC--cCCccHHHHHHHHHHhCCCeEcCHHHHHHHHHH
Confidence 55557999999887641 11111233444 46889999 3445555543
No 338
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=36.00 E-value=89 Score=20.53 Aligned_cols=28 Identities=14% Similarity=0.197 Sum_probs=14.2
Q ss_pred CceEEEEeCCcccHHHHhccCCCEEEECC
Q 037843 42 GYHFEVYRNDELTVAELKRKKPRGVVISP 70 (203)
Q Consensus 42 g~~~~v~~~~~~~~~~l~~~~~dgiil~G 70 (203)
|+++.+........++.. .++|.|+++.
T Consensus 32 gi~~~i~~~~~~~~~~~~-~~~D~Ii~t~ 59 (109)
T 2l2q_A 32 NINATIEAIAETRLSEVV-DRFDVVLLAP 59 (109)
T ss_dssp TCSEEEEEECSTTHHHHT-TTCSEEEECS
T ss_pred CCCeEEEEecHHHHHhhc-CCCCEEEECC
Confidence 766554332222333322 2689887755
No 339
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=35.18 E-value=1.6e+02 Score=23.67 Aligned_cols=54 Identities=11% Similarity=0.153 Sum_probs=29.8
Q ss_pred CcEEEE-eCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhc--cCCCEEEE
Q 037843 13 NPIVVI-DNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKR--KKPRGVVI 68 (203)
Q Consensus 13 ~~i~ii-d~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~--~~~dgiil 68 (203)
.+++|+ ....+++..+++.+.+... ..|+.++++.....+..++.. .++|+|||
T Consensus 252 ~~i~i~y~S~~GnT~~lA~~ia~~l~--~~g~~v~~~~~~~~~~~~~~~~~~~~d~ii~ 308 (398)
T 1ycg_A 252 AKAVIAYDTMWLSTEKMAHALMDGLV--AGGCEVKLFKLSVSDRNDVIKEILDARAVLV 308 (398)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHHH--HTTCEEEEEEGGGSCHHHHHHHHHHCSEEEE
T ss_pred CeEEEEEECCccHHHHHHHHHHHHHH--hcCCeEEEEECCCCCHHHHHHHHHHCCEEEE
Confidence 455555 3334566667666654321 127788777654334444321 15799999
No 340
>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A 3r7b_A 3r7n_A 3r7s_A
Probab=35.08 E-value=1e+02 Score=22.24 Aligned_cols=42 Identities=19% Similarity=0.272 Sum_probs=26.8
Q ss_pred ccccccCCCCCcEEEEeCCc------------h--HHHHHHHHHHHhhhhhcCCceEEEEeC
Q 037843 3 EVLKLSKNDKNPIVVIDNYD------------S--FTYNLCQYMGELELELSQGYHFEVYRN 50 (203)
Q Consensus 3 ~~~~~~~~~~~~i~iid~~~------------~--~~~~l~~~l~~~~~~~~~g~~~~v~~~ 50 (203)
+.++++.+.+...+||++.. + -...+.+.|+.+ |..|++...
T Consensus 24 ~~Y~m~~~~rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~L------gF~V~~~~d 79 (167)
T 1pyo_A 24 LAYRLQSRPRGLALVLSNVHFTGEKELEFRSGGDVDHSTLVTLFKLL------GYDVHVLCD 79 (167)
T ss_dssp GBCCCCCSSSEEEEEEECCCCCSSSCSCCCTTHHHHHHHHHHHHHHT------TEEEEEEES
T ss_pred ccccCCCCCceEEEEEeCcccCCCCCCccCCCcHHHHHHHHHHHHHC------CCEEEEeeC
Confidence 34555554444567776542 0 134688899999 999988754
No 341
>1vmd_A MGS, methylglyoxal synthase; TM1185, structural genomics, JCSG, P structure initiative, PSI, joint center for structural GENO lyase; 2.06A {Thermotoga maritima} SCOP: c.24.1.2
Probab=34.98 E-value=1.1e+02 Score=22.47 Aligned_cols=63 Identities=13% Similarity=0.014 Sum_probs=35.2
Q ss_pred CceEEEEeCCcc----c-HHHHhccCCCEEEECCCCCCCCC-cchHHHHHHH-hCCCCcee-e-hhHHHHHH
Q 037843 42 GYHFEVYRNDEL----T-VAELKRKKPRGVVISPGPGAPQE-SGISFRTVLE-LGPTMPLF-C-MGLKCIGE 104 (203)
Q Consensus 42 g~~~~v~~~~~~----~-~~~l~~~~~dgiil~GG~~~~~~-~~~~~~~i~~-~~~~~Pil-C-lG~Qlla~ 104 (203)
|+++..+..-.. . .+.+.+-++|.||.+..|-.... ......+.+. ...++|++ . -+..++..
T Consensus 73 Gl~v~~v~k~~eGG~pqI~d~I~~geIdlVInt~dPl~~~~h~~D~~~IRR~A~~~~IP~~TnlatA~A~v~ 144 (178)
T 1vmd_A 73 GLKVHRLKSGPLGGDQQIGAMIAEGKIDVLIFFWDPLEPQAHDVDVKALIRIATVYNIPVAITRSTADFLIS 144 (178)
T ss_dssp CCCCEECSCGGGTHHHHHHHHHHTTSCCEEEEECCSSSCCTTSCCHHHHHHHHHHTTCCEESSHHHHHHHHH
T ss_pred CceeEEEeecCCCCCchHHHHHHCCCccEEEEccCccCCCcccccHHHHHHHHHHcCCCEEeCHHHHHHHHH
Confidence 888887643111 1 22344457999999988533222 2222333333 35789999 4 44555544
No 342
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=34.56 E-value=82 Score=28.61 Aligned_cols=81 Identities=19% Similarity=0.151 Sum_probs=47.1
Q ss_pred CCCcEEEE----eCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHh----ccCCCEEEECCCCCCC-CCcchH
Q 037843 11 DKNPIVVI----DNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELK----RKKPRGVVISPGPGAP-QESGIS 81 (203)
Q Consensus 11 ~~~~i~ii----d~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~----~~~~dgiil~GG~~~~-~~~~~~ 81 (203)
.+++|++- |-++--...+...|+.. |++|.....+ .+++++. ..++|.|.+|+-...- .....+
T Consensus 595 ~r~kVvlatvg~D~HdiG~~iVa~~l~~~------GfeVi~lG~~-v~~eeiv~aA~e~~adiVglSsl~~~~~~~~~~v 667 (727)
T 1req_A 595 RRPRILLAKMGQDGHDRGQKVIATAYADL------GFDVDVGPLF-QTPEETARQAVEADVHVVGVSSLAGGHLTLVPAL 667 (727)
T ss_dssp SCCEEEEECBTTCCCCHHHHHHHHHHHHH------TCEEEECCTT-BCHHHHHHHHHHTTCSEEEEEECSSCHHHHHHHH
T ss_pred CCCEEEEEeCCcchhHHHHHHHHHHHHhC------CeEEEeCCCC-CCHHHHHHHHHHcCCCEEEEeeecHhHHHHHHHH
Confidence 35677766 54443344555678888 9999776554 5565543 3478999998753211 011223
Q ss_pred HHHHHHhC-CCCceeehh
Q 037843 82 FRTVLELG-PTMPLFCMG 98 (203)
Q Consensus 82 ~~~i~~~~-~~~PilClG 98 (203)
.+.+++.+ +++||+|-|
T Consensus 668 i~~L~~~G~~~i~VivGG 685 (727)
T 1req_A 668 RKELDKLGRPDILITVGG 685 (727)
T ss_dssp HHHHHHTTCTTSEEEEEE
T ss_pred HHHHHhcCCCCCEEEEcC
Confidence 45555543 357777655
No 343
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=34.47 E-value=74 Score=25.78 Aligned_cols=67 Identities=16% Similarity=0.284 Sum_probs=40.0
Q ss_pred CcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCc---chHHHHHHH-h
Q 037843 13 NPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQES---GISFRTVLE-L 88 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~---~~~~~~i~~-~ 88 (203)
-+||+|..-....+.+.|.|..+.. + | -++ ++.|||+ |.+....+. ....+++++ +
T Consensus 232 g~ILfLEdv~e~py~idRmL~qL~~--a-G--------------~~~--~~~Giil-G~f~~~~~~~~~~~~~~vl~~~~ 291 (336)
T 3sr3_A 232 GDILFIEDSSKDAATIERSFSFLKI--N-G--------------VFD--KVSGIIL-GKHEQFDDCGTNRKPYEILLEVL 291 (336)
T ss_dssp TCEEEEECCSCBHHHHHHHHHHHHH--T-T--------------GGG--TCSEEEE-ECCTTCBCTTSCCCHHHHHHHHH
T ss_pred CeEEEEEeCCCCHHHHHHHHHHHHH--c-C--------------Ccc--cCCEEEE-ccCcccccCCccccHHHHHHHHh
Confidence 5788886555557788888777610 0 1 122 5689999 654322222 124566666 3
Q ss_pred -CCCCcee---ehhH
Q 037843 89 -GPTMPLF---CMGL 99 (203)
Q Consensus 89 -~~~~Pil---ClG~ 99 (203)
..++||+ =+||
T Consensus 292 ~~~~iPV~~~~~~GH 306 (336)
T 3sr3_A 292 QNQRIPLLADFDCCH 306 (336)
T ss_dssp TTCCCCEEEEESSSS
T ss_pred hcCCCeEEECCCCCC
Confidence 4589999 5566
No 344
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=34.44 E-value=1.2e+02 Score=22.18 Aligned_cols=58 Identities=17% Similarity=0.196 Sum_probs=32.3
Q ss_pred CCcEEEEeCCc-------hHHHHHHHHHHHhhhhhcCCceEEEEeCCc-ccHHHHhc--cCCCEEEECCCC
Q 037843 12 KNPIVVIDNYD-------SFTYNLCQYMGELELELSQGYHFEVYRNDE-LTVAELKR--KKPRGVVISPGP 72 (203)
Q Consensus 12 ~~~i~iid~~~-------~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~-~~~~~l~~--~~~dgiil~GG~ 72 (203)
..+||||.... +++..+.+.+.+..++. |.+++++...+ .+..++.+ ...|+||| +.|
T Consensus 12 ~~~iLii~gsP~~~~s~~s~~~~l~~~~~~~~~~~--g~~v~~~dL~~~~d~~~~~~~l~~AD~iV~-~~P 79 (204)
T 2amj_A 12 SSNILIINGAKKFAHSNGQLNDTLTEVADGTLRDL--GHDVRIVRADSDYDVKAEVQNFLWADVVIW-QMP 79 (204)
T ss_dssp CCEEEEEECCC------CHHHHHHHHHHHHHHHHT--TCEEEEEESSSCCCHHHHHHHHHHCSEEEE-EEE
T ss_pred CcCEEEEEcCCCcccCcCcHHHHHHHHHHHHHHHc--CCEEEEEeCCccccHHHHHHHHHhCCEEEE-ECC
Confidence 46888885432 56666666554432221 78888876432 22222211 15799999 444
No 345
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=34.21 E-value=1.5e+02 Score=22.29 Aligned_cols=78 Identities=10% Similarity=0.028 Sum_probs=36.2
Q ss_pred CCCCcEEEEeC---CchHHHHHHHHHHHhhhhhcCCceEEEEeCC--ccc----HHHHhccCCCEEEECCCCCCCCCcch
Q 037843 10 NDKNPIVVIDN---YDSFTYNLCQYMGELELELSQGYHFEVYRND--ELT----VAELKRKKPRGVVISPGPGAPQESGI 80 (203)
Q Consensus 10 ~~~~~i~iid~---~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~--~~~----~~~l~~~~~dgiil~GG~~~~~~~~~ 80 (203)
+...+|.||-. ...|...+.+.+++...+. |+.+.+...+ ... .+.+...++||||+.+... ..
T Consensus 9 ~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~--g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~-----~~ 81 (289)
T 3g85_A 9 QSKPTIALYWSSDISVNIISRFLRGLQSKLAKQ--NYNYNVVICPYKTDCLHLEKGISKENSFDAAIIANISN-----YD 81 (289)
T ss_dssp --CCEEEEEEETTSCGGGHHHHHHHHHHHHHHT--TTCSEEEEEEECTTCGGGCGGGSTTTCCSEEEESSCCH-----HH
T ss_pred CCCceEEEEeccccchHHHHHHHHHHHHHHHHc--CCeEEEEecCCCchhHHHHHHHHhccCCCEEEEecCCc-----cc
Confidence 33466766632 3344444444443332111 8877665321 111 1222234799999976421 11
Q ss_pred HHHHHHHhCCCCcee
Q 037843 81 SFRTVLELGPTMPLF 95 (203)
Q Consensus 81 ~~~~i~~~~~~~Pil 95 (203)
..+++....++|++
T Consensus 82 -~~~~~~~~~~iPvV 95 (289)
T 3g85_A 82 -LEYLNKASLTLPII 95 (289)
T ss_dssp -HHHHHHCCCSSCEE
T ss_pred -HHHHHhccCCCCEE
Confidence 22333345567776
No 346
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=34.19 E-value=19 Score=26.74 Aligned_cols=67 Identities=10% Similarity=-0.050 Sum_probs=33.5
Q ss_pred CCcEEEEeCCch-----HHHHHHHHHHHhhhhhcCCceEEEEeCCc------ccH----HHHhccCCCEEEECCCCCCCC
Q 037843 12 KNPIVVIDNYDS-----FTYNLCQYMGELELELSQGYHFEVYRNDE------LTV----AELKRKKPRGVVISPGPGAPQ 76 (203)
Q Consensus 12 ~~~i~iid~~~~-----~~~~l~~~l~~~~~~~~~g~~~~v~~~~~------~~~----~~l~~~~~dgiil~GG~~~~~ 76 (203)
|++|+||..... +...+.+.+++. |.+++++...+ .+. +++. ..|+||+ +.|--.+
T Consensus 1 MmkiLiI~gsp~~~~s~l~~~l~~~~~~~------g~ev~~~dL~~~~~~~~~dv~~~~~~l~--~AD~iv~-~~P~y~~ 71 (192)
T 3f2v_A 1 MPKTLIILAHPNISQSTVHKHWSDAVRQH------TDRFTVHELYAVYPQGKIDVAAEQKLIE--THDSLVW-QFPIYWF 71 (192)
T ss_dssp -CCEEEEECCTTGGGCSHHHHHHHHHTTC------TTTEEEEEHHHHCTTCCCCHHHHHHHHH--TSSSEEE-EEECBTT
T ss_pred CCEEEEEEeCCCccHHHHHHHHHHHHHhC------CCeEEEEEchhcCCCCchhHHHHHHHHH--hCCEEEE-EcChhhc
Confidence 467999965432 233344444443 77777765321 112 2333 5799999 4443322
Q ss_pred Ccc-hHHHHHHH
Q 037843 77 ESG-ISFRTVLE 87 (203)
Q Consensus 77 ~~~-~~~~~i~~ 87 (203)
... .+..+|.+
T Consensus 72 ~~pa~lK~~iDr 83 (192)
T 3f2v_A 72 NCPPLLKQWLDE 83 (192)
T ss_dssp BCCHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 222 34455555
No 347
>3p45_A Caspase-6; protease, huntington'S disease, physio PH, competitive inhibition, hydrolase; 2.53A {Homo sapiens}
Probab=34.17 E-value=1.2e+02 Score=22.24 Aligned_cols=47 Identities=17% Similarity=0.350 Sum_probs=28.7
Q ss_pred ccccccCCCCCcEEEEeCCch--------------HHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHH
Q 037843 3 EVLKLSKNDKNPIVVIDNYDS--------------FTYNLCQYMGELELELSQGYHFEVYRNDELTVAE 57 (203)
Q Consensus 3 ~~~~~~~~~~~~i~iid~~~~--------------~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~ 57 (203)
+.+++..+.+...+||++..- -..+|.+.|+.+ |..|++... .+..+
T Consensus 35 ~~Y~m~~~~rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~F~~L------GF~V~~~~d--lt~~e 95 (179)
T 3p45_A 35 EKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDL------GFEVKCFND--LKAEE 95 (179)
T ss_dssp CBCCCCSSBCCEEEEEECCSCCGGGCCCCCTTHHHHHHHHHHHHHHT------TCEEEEEES--CCHHH
T ss_pred ccCCCCCCccCEEEEEeCcccCCCCCCCCCCCCHHHHHHHHHHHHHC------CCEEEEEeC--CCHHH
Confidence 344444443344677766421 135688899999 999988764 44444
No 348
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=33.79 E-value=64 Score=29.50 Aligned_cols=92 Identities=15% Similarity=0.131 Sum_probs=51.8
Q ss_pred CCCcEEEE----eCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHh----ccCCCEEEECCCCCCC-CCcchH
Q 037843 11 DKNPIVVI----DNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELK----RKKPRGVVISPGPGAP-QESGIS 81 (203)
Q Consensus 11 ~~~~i~ii----d~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~----~~~~dgiil~GG~~~~-~~~~~~ 81 (203)
.+++|++- |-++--...+...|+.. |++|.....+ .+++++. ..++|.|.+|+-...- .....+
T Consensus 603 ~r~kVvlatvg~D~HdiG~~iVa~~l~~~------GfeVi~lG~~-v~~eeiv~aA~e~~adiVglSsl~~~~~~~~~~v 675 (762)
T 2xij_A 603 RRPRLLVAKMGQDGHDRGAKVIATGFADL------GFDVDIGPLF-QTPREVAQQAVDADVHAVGVSTLAAGHKTLVPEL 675 (762)
T ss_dssp SCCEEEEECCSSCCCCHHHHHHHHHHHHT------TCEEEECCTT-CCHHHHHHHHHHTTCSEEEEEECSSCHHHHHHHH
T ss_pred CCCEEEEEecCcchhhHHHHHHHHHHHhC------CeEEeeCCCC-CCHHHHHHHHHHcCCCEEEEeeecHHHHHHHHHH
Confidence 35677766 43333334455677877 9999766554 4565543 2478999998653211 111223
Q ss_pred HHHHHHhC-CCCceeehh---H--HHHHHHhCCe
Q 037843 82 FRTVLELG-PTMPLFCMG---L--KCIGEALEGR 109 (203)
Q Consensus 82 ~~~i~~~~-~~~PilClG---~--Qlla~a~gg~ 109 (203)
.+.+++.+ +++||+|-| - +-.....|..
T Consensus 676 i~~Lr~~G~~dv~VivGG~~P~~d~~~l~~~GaD 709 (762)
T 2xij_A 676 IKELNSLGRPDILVMCGGVIPPQDYEFLFEVGVS 709 (762)
T ss_dssp HHHHHHTTCTTSEEEEEESCCGGGHHHHHHHTCC
T ss_pred HHHHHhcCCCCCEEEEeCCCCcccHHHHHhCCCC
Confidence 45555543 357777766 2 2334555654
No 349
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=33.66 E-value=1.4e+02 Score=22.37 Aligned_cols=58 Identities=16% Similarity=0.283 Sum_probs=30.5
Q ss_pred CCCcEEEEe--CCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcc-----cHHHHhccCCCEEEECCC
Q 037843 11 DKNPIVVID--NYDSFTYNLCQYMGELELELSQGYHFEVYRNDEL-----TVAELKRKKPRGVVISPG 71 (203)
Q Consensus 11 ~~~~i~iid--~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~-----~~~~l~~~~~dgiil~GG 71 (203)
...+|.++- ..+.|...+.+.+++...+ .|+.+.+...++. ..+.+...++|||| .+.
T Consensus 4 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~--~g~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI-~~~ 68 (280)
T 3gyb_A 4 RTQLIAVLIDDYSNPWFIDLIQSLSDVLTP--KGYRLSVIDSLTSQAGTDPITSALSMRPDGII-IAQ 68 (280)
T ss_dssp CCCEEEEEESCTTSGGGHHHHHHHHHHHGG--GTCEEEEECSSSSCSSSCHHHHHHTTCCSEEE-EES
T ss_pred ccCEEEEEeCCCCChHHHHHHHHHHHHHHH--CCCEEEEEeCCCchHHHHHHHHHHhCCCCEEE-ecC
Confidence 346676663 3334444444444333211 1899887754311 12334445899999 444
No 350
>3klb_A Putative flavoprotein; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: FMN; 1.75A {Bacteroides fragilis nctc 9343}
Probab=33.62 E-value=72 Score=22.49 Aligned_cols=30 Identities=13% Similarity=0.216 Sum_probs=18.8
Q ss_pred CCcEEEEe-CCchHHHHHHHHHHHhhhhhcCCceEE
Q 037843 12 KNPIVVID-NYDSFTYNLCQYMGELELELSQGYHFE 46 (203)
Q Consensus 12 ~~~i~iid-~~~~~~~~l~~~l~~~~~~~~~g~~~~ 46 (203)
+.+|+||= ...+++..+++.+.+.. |.++.
T Consensus 4 ~~kilIvY~S~tG~T~~vA~~Ia~~l-----~~~~~ 34 (162)
T 3klb_A 4 DRKILVAYFSCSGVTKAVAEKLAAIT-----GADLY 34 (162)
T ss_dssp GSCEEEEECCSSSHHHHHHHHHHHHH-----TCEEE
T ss_pred CCCEEEEEECCCchHHHHHHHHHHHh-----CCCeE
Confidence 35677773 33467888888776642 66653
No 351
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=33.51 E-value=71 Score=26.38 Aligned_cols=68 Identities=13% Similarity=0.213 Sum_probs=39.7
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCc---chHHHHHHH-
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQES---GISFRTVLE- 87 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~---~~~~~~i~~- 87 (203)
.-+||+|..-....+.+.|.|..+.. + | -+. ++.|||| |.+....++ ..+.+++++
T Consensus 263 ~g~ILfLEdv~E~py~idRmL~qL~~--a-G--------------~f~--~~~GIil-G~f~~~~~~~~~~~~~~vl~~~ 322 (371)
T 3tla_A 263 NGDILFIEDSRKSIATVERLFSMLKL--N-R--------------VFD--KVSAIIL-GKHELFDCAGSKRRPYEVLTEV 322 (371)
T ss_dssp TTCEEEEECBSCBHHHHHHHHHHHHH--T-T--------------GGG--TCSEEEE-ECCBTCBCTTSCCCHHHHHHHH
T ss_pred CCeEEEEEeCCCCHHHHHHHHHHHHH--c-C--------------Ccc--cCCEEEE-cCCccccCCCccccHHHHHHHH
Confidence 35688886544457777777777610 0 1 122 5689999 554322222 124566666
Q ss_pred h-CCCCcee---ehhH
Q 037843 88 L-GPTMPLF---CMGL 99 (203)
Q Consensus 88 ~-~~~~Pil---ClG~ 99 (203)
+ ..++||+ -+||
T Consensus 323 ~~~~~iPVv~~~~~GH 338 (371)
T 3tla_A 323 LDGKQIPVLDGFDCSH 338 (371)
T ss_dssp HTTCCCCEEEEESCSS
T ss_pred HhhCCCcEEECCCCCC
Confidence 3 4589999 5565
No 352
>1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A {Escherichia coli} SCOP: c.24.1.2 PDB: 1egh_A 1ik4_A* 1s8a_A 1s89_A
Probab=33.24 E-value=93 Score=22.25 Aligned_cols=62 Identities=10% Similarity=-0.077 Sum_probs=34.3
Q ss_pred CceEEEEeCCcc----c-HHHHhccCCCEEEECCCCCCCCC-cchHHHHHHH-hCCCCcee-e-hhHHHHH
Q 037843 42 GYHFEVYRNDEL----T-VAELKRKKPRGVVISPGPGAPQE-SGISFRTVLE-LGPTMPLF-C-MGLKCIG 103 (203)
Q Consensus 42 g~~~~v~~~~~~----~-~~~l~~~~~dgiil~GG~~~~~~-~~~~~~~i~~-~~~~~Pil-C-lG~Qlla 103 (203)
|++++.+..-.. . .+.+.+-++|.||.+..|-.... ..+...+.+. ...++|++ . -+..++.
T Consensus 57 Gl~v~~v~k~~eGG~p~I~d~I~~geIdlVInt~~pl~~~~h~~D~~~IrR~A~~~~IP~~T~latA~a~v 127 (152)
T 1b93_A 57 GMNVNAMLSGPMGGDQQVGALISEGKIDVLIFFWDPLNAVPHDPDVKALLRLATVWNIPVATNVATADFII 127 (152)
T ss_dssp CCCCEEECCGGGTHHHHHHHHHHTTCCCEEEEECCTTSCCTTHHHHHHHHHHHHHTTCCEESSHHHHHHHH
T ss_pred CceeEEEEecCCCCCchHHHHHHCCCccEEEEcCCcccCCcccccHHHHHHHHHHcCCCEEeCHHHHHHHH
Confidence 888887753111 1 22344458999999988644222 2222333333 36789999 4 3344443
No 353
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=33.18 E-value=1.1e+02 Score=23.12 Aligned_cols=58 Identities=12% Similarity=0.133 Sum_probs=30.5
Q ss_pred CCcEEEEeC-CchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccH-------HHHhccCCCEEEECCCC
Q 037843 12 KNPIVVIDN-YDSFTYNLCQYMGELELELSQGYHFEVYRNDELTV-------AELKRKKPRGVVISPGP 72 (203)
Q Consensus 12 ~~~i~iid~-~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~-------~~l~~~~~dgiil~GG~ 72 (203)
..+|.++-. ...|...+.+.+++... ..|+.+.+.... .+. +.+...++||||+.+..
T Consensus 8 ~~~Igvi~~~~~~~~~~~~~gi~~~~~--~~g~~~~~~~~~-~~~~~~~~~~~~l~~~~vdgiI~~~~~ 73 (288)
T 2qu7_A 8 SNIIAFIVPDQNPFFTEVLTEISHECQ--KHHLHVAVASSE-ENEDKQQDLIETFVSQNVSAIILVPVK 73 (288)
T ss_dssp EEEEEEEESSCCHHHHHHHHHHHHHHG--GGTCEEEEEECT-TCHHHHHHHHHHHHHTTEEEEEECCSS
T ss_pred CCEEEEEECCCCchHHHHHHHHHHHHH--HCCCEEEEEeCC-CCHHHHHHHHHHHHHcCccEEEEecCC
Confidence 456766633 33343444444433311 128888776543 221 22333478999997754
No 354
>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}
Probab=33.08 E-value=1.7e+02 Score=23.24 Aligned_cols=54 Identities=4% Similarity=0.001 Sum_probs=30.6
Q ss_pred CCcEEEEeCCchHHH-HHHHHHHHhhhhhcCCceEEEEe-CC--------cccHHHHhc--cCCCEEEECCC
Q 037843 12 KNPIVVIDNYDSFTY-NLCQYMGELELELSQGYHFEVYR-ND--------ELTVAELKR--KKPRGVVISPG 71 (203)
Q Consensus 12 ~~~i~iid~~~~~~~-~l~~~l~~~~~~~~~g~~~~v~~-~~--------~~~~~~l~~--~~~dgiil~GG 71 (203)
+.||+||-.+. ... ...+.++... ++++.-+- .+ ..+.+++.. .++|+|+++-.
T Consensus 25 ~~rvgiiG~G~-ig~~~~~~~l~~~~-----~~~lvav~d~~~~~~g~~~~~~~~~ll~~~~~vD~V~i~tp 90 (330)
T 4ew6_A 25 PINLAIVGVGK-IVRDQHLPSIAKNA-----NFKLVATASRHGTVEGVNSYTTIEAMLDAEPSIDAVSLCMP 90 (330)
T ss_dssp CEEEEEECCSH-HHHHTHHHHHHHCT-----TEEEEEEECSSCCCTTSEEESSHHHHHHHCTTCCEEEECSC
T ss_pred CceEEEEecCH-HHHHHHHHHHHhCC-----CeEEEEEEeCChhhcCCCccCCHHHHHhCCCCCCEEEEeCC
Confidence 36899998864 222 4556666542 55554321 11 024566643 36899999543
No 355
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A*
Probab=33.08 E-value=1.3e+02 Score=21.51 Aligned_cols=42 Identities=14% Similarity=0.215 Sum_probs=26.7
Q ss_pred ccccccCCCCCcEEEEeCCc---------------------hHHHHHHHHHHHhhhhhcCCceEEEEeC
Q 037843 3 EVLKLSKNDKNPIVVIDNYD---------------------SFTYNLCQYMGELELELSQGYHFEVYRN 50 (203)
Q Consensus 3 ~~~~~~~~~~~~i~iid~~~---------------------~~~~~l~~~l~~~~~~~~~g~~~~v~~~ 50 (203)
+.+++..+.+...+||++.. --...|.+.|+.+ |..|.+...
T Consensus 14 ~~Y~m~~~~rG~~LIinn~~F~~~~~~~~~~~~l~~R~Gt~~D~~~L~~~f~~L------gF~V~~~~d 76 (164)
T 1qtn_A 14 KVYQMKSKPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEEL------HFEIKPHDD 76 (164)
T ss_dssp CBCCCCCSSCCEEEEEECCCCHHHHHHCGGGTTCCCCTTHHHHHHHHHHHHHHT------TCEEEEEES
T ss_pred ccccCCCCCceEEEEEechhcCCccccccccccCcCCCCcHHHHHHHHHHHHHC------CCEEEEecC
Confidence 44555555455567777641 0123577888888 999988764
No 356
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=33.01 E-value=1.1e+02 Score=22.92 Aligned_cols=53 Identities=11% Similarity=0.125 Sum_probs=28.4
Q ss_pred CCcEEEEeC----CchHHHHHH----HHHHHhhhhhcCCceEEEEeCCcccH-------HHHhccCCCEEEECCC
Q 037843 12 KNPIVVIDN----YDSFTYNLC----QYMGELELELSQGYHFEVYRNDELTV-------AELKRKKPRGVVISPG 71 (203)
Q Consensus 12 ~~~i~iid~----~~~~~~~l~----~~l~~~~~~~~~g~~~~v~~~~~~~~-------~~l~~~~~dgiil~GG 71 (203)
..+|.+|-. .+.|...+. +++++. |+.+.+.... .+. +.+...++||||+.+.
T Consensus 19 ~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~------g~~~~~~~~~-~~~~~~~~~~~~l~~~~vdgii~~~~ 86 (296)
T 3brq_A 19 TQTLGLVVTNTLYHGIYFSELLFHAARMAEEK------GRQLLLADGK-HSAEEERQAIQYLLDLRCDAIMIYPR 86 (296)
T ss_dssp CCEEEEEECGGGCC--CHHHHHHHHHHHHHHT------TCEEEEECCT-TSHHHHHHHHHHHHHTTCSEEEEECS
T ss_pred CceEEEEeCCcccCCchHHHHHHHHHHHHHHC------CCEEEEEeCC-CCHHHHHHHHHHHHhcCCCEEEEecC
Confidence 456766633 333433333 344444 8888776543 222 2233347999999765
No 357
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=33.01 E-value=47 Score=25.36 Aligned_cols=74 Identities=12% Similarity=0.234 Sum_probs=39.1
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELGP 90 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~~ 90 (203)
+.+|+|||-...+...+.+.++... |..+...... .....+....||.||+= -..|...+ .+.+.+++ .
T Consensus 4 ~~~ILiVdD~~~~~~~l~~~L~~~~-----~~~v~~~~~~-~~~~~~~~~~~dlvllD--~~mP~~~G~~~~~~lr~--~ 73 (259)
T 3luf_A 4 KQKILIVEDSMTIRRMLIQAIAQQT-----GLEIDAFDTL-EGARHCQGDEYVVALVD--LTLPDAPSGEAVKVLLE--R 73 (259)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHHHH-----CCEEEEESST-GGGTTCCTTTEEEEEEE--SCBTTBTTSHHHHHHHH--T
T ss_pred CCeEEEEECCHHHHHHHHHHHHhcC-----CeEEEEeChH-HHHHHhhcCCCcEEEEe--CCCCCCCHHHHHHHHHh--C
Confidence 4689999987766777777776531 6666443221 11111222257777761 11122222 23444554 3
Q ss_pred CCcee
Q 037843 91 TMPLF 95 (203)
Q Consensus 91 ~~Pil 95 (203)
+.||+
T Consensus 74 ~~pvi 78 (259)
T 3luf_A 74 GLPVV 78 (259)
T ss_dssp TCCEE
T ss_pred CCCEE
Confidence 58988
No 358
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=32.86 E-value=1.7e+02 Score=22.58 Aligned_cols=52 Identities=13% Similarity=0.061 Sum_probs=27.9
Q ss_pred CcEEEEe--CCchHHHHH----HHHHHHhhhhhcCCceEEEE-eCCcccH-------HHHhccCCCEEEECCC
Q 037843 13 NPIVVID--NYDSFTYNL----CQYMGELELELSQGYHFEVY-RNDELTV-------AELKRKKPRGVVISPG 71 (203)
Q Consensus 13 ~~i~iid--~~~~~~~~l----~~~l~~~~~~~~~g~~~~v~-~~~~~~~-------~~l~~~~~dgiil~GG 71 (203)
.+|.++- ....|...+ .+++++. |+.+.+. +.. .+. +.+...++||||+.+.
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~g~~~~~~~~------g~~~~~~~~~~-~d~~~q~~~i~~li~~~vdgiii~~~ 69 (316)
T 1tjy_A 4 ERIAFIPKLVGVGFFTSGGNGAQEAGKAL------GIDVTYDGPTE-PSVSGQVQLVNNFVNQGYDAIIVSAV 69 (316)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHHHHHH------TCEEEECCCSS-CCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred CEEEEEeCCCCChHHHHHHHHHHHHHHHh------CCEEEEECCCC-CCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 5677773 233343333 3444555 8888765 222 222 2233347999999653
No 359
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=32.47 E-value=1.6e+02 Score=22.18 Aligned_cols=30 Identities=17% Similarity=0.166 Sum_probs=18.0
Q ss_pred CceEEEEeCCc-c--c---HHHHhccCCCEEEECCC
Q 037843 42 GYHFEVYRNDE-L--T---VAELKRKKPRGVVISPG 71 (203)
Q Consensus 42 g~~~~v~~~~~-~--~---~~~l~~~~~dgiil~GG 71 (203)
|+.+.+...+. . . .+.+...++||||+.+.
T Consensus 38 g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 73 (287)
T 3bbl_A 38 NYFVLPFPFSEDRSQIDIYRDLIRSGNVDGFVLSSI 73 (287)
T ss_dssp TCEEEECCCCSSTTCCHHHHHHHHTTCCSEEEECSC
T ss_pred CCEEEEEeCCCchHHHHHHHHHHHcCCCCEEEEeec
Confidence 88887754321 1 1 22333457999999764
No 360
>2c4w_A 3-dehydroquinate dehydratase; 3-dehydroquinase, shikimate pathway, aromatic amino acid biosynthesis, lyase, sulphonamide; HET: GAJ; 1.55A {Helicobacter pylori} PDB: 2c57_A* 2xda_A* 1j2y_A* 2wks_A* 2xb9_A* 2c4v_A* 2xd9_A*
Probab=32.34 E-value=1.5e+02 Score=21.78 Aligned_cols=45 Identities=16% Similarity=0.309 Sum_probs=23.8
Q ss_pred HHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhc------cC-CCEEEECCCC
Q 037843 26 YNLCQYMGELELELSQGYHFEVYRNDELTVAELKR------KK-PRGVVISPGP 72 (203)
Q Consensus 26 ~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~------~~-~dgiil~GG~ 72 (203)
..+.+.+++...+-..|+.++....+ ...++.+ .+ +|||||=+|.
T Consensus 37 ~di~~~l~~~a~~~~~g~~l~~~QSN--~EGeLId~Ih~a~~~~~dgIIINpgA 88 (176)
T 2c4w_A 37 DQIHEIMQTFVKQGNLDVELEFFQTN--FEGEIIDKIQESVGSEYEGIIINPGA 88 (176)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEECS--CHHHHHHHHHHHHSSSCCEEEEECGG
T ss_pred HHHHHHHHHHhccccCCCEEEEEeeC--cHHHHHHHHHHhccCCeeEEEECcch
Confidence 34555554442200227888877654 2333321 24 8999996664
No 361
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=32.21 E-value=1.3e+02 Score=26.93 Aligned_cols=39 Identities=10% Similarity=0.201 Sum_probs=24.6
Q ss_pred cccCC--CCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCC
Q 037843 6 KLSKN--DKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRND 51 (203)
Q Consensus 6 ~~~~~--~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~ 51 (203)
++|.+ |+++|+|+.. +.....+.+.++++ |+++..+..+
T Consensus 20 ~mm~~~~m~~kILI~g~-Geia~~iiraar~l------Gi~~vav~s~ 60 (675)
T 3u9t_A 20 HMNPDYRSIQRLLVANR-GEIACRVMRSARAL------GIGSVAVHSD 60 (675)
T ss_dssp -----CCCCSEEEECCC-HHHHHHHHHHHHHH------TCEEEEEECS
T ss_pred cccccccCCCEEEEECC-CHHHHHHHHHHHHC------CCEEEEEECC
Confidence 34443 3466777764 45567788999999 9998877543
No 362
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=31.88 E-value=2.2e+02 Score=23.65 Aligned_cols=33 Identities=15% Similarity=0.181 Sum_probs=25.4
Q ss_pred CCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeC
Q 037843 11 DKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRN 50 (203)
Q Consensus 11 ~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~ 50 (203)
..++|+||-.+.+-.. .+++|.+. |+.|.+...
T Consensus 8 ~~k~v~viG~G~sG~s-~A~~l~~~------G~~V~~~D~ 40 (451)
T 3lk7_A 8 ENKKVLVLGLARSGEA-AARLLAKL------GAIVTVNDG 40 (451)
T ss_dssp TTCEEEEECCTTTHHH-HHHHHHHT------TCEEEEEES
T ss_pred CCCEEEEEeeCHHHHH-HHHHHHhC------CCEEEEEeC
Confidence 3578999998765443 58889888 999988754
No 363
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=31.67 E-value=1.5e+02 Score=21.72 Aligned_cols=53 Identities=19% Similarity=0.085 Sum_probs=28.5
Q ss_pred CcEEEEe--CCchHHHHHH----HHHHHhhhhhcCCceEEEEeCCccc------HHHHhccCCCEEEECCC
Q 037843 13 NPIVVID--NYDSFTYNLC----QYMGELELELSQGYHFEVYRNDELT------VAELKRKKPRGVVISPG 71 (203)
Q Consensus 13 ~~i~iid--~~~~~~~~l~----~~l~~~~~~~~~g~~~~v~~~~~~~------~~~l~~~~~dgiil~GG 71 (203)
.+|.+|- ..+.|...+. +.+++. |+.+.+....... .+.+...++||||+.+.
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~~~~~------g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 67 (255)
T 1byk_A 3 KVVAIIVTRLDSLSENLAVQTMLPAFYEQ------GYDPIMMESQFSPQLVAEHLGVLKRRNIDGVVLFGF 67 (255)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHHH------TCEEEEEECTTCHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred CEEEEEeCCCCCccHHHHHHHHHHHHHHc------CCEEEEEeCCCcHHHHHHHHHHHHhcCCCEEEEecC
Confidence 4565652 2333433333 444555 8988776543111 12233347999999774
No 364
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=31.17 E-value=1.4e+02 Score=22.89 Aligned_cols=29 Identities=17% Similarity=0.290 Sum_probs=17.3
Q ss_pred ccCCCEEEECCCCCCCCCcchHHHHHHHhCCCCcee-e
Q 037843 60 RKKPRGVVISPGPGAPQESGISFRTVLELGPTMPLF-C 96 (203)
Q Consensus 60 ~~~~dgiil~GG~~~~~~~~~~~~~i~~~~~~~Pil-C 96 (203)
..++||||++|.. ... .+.....++|++ |
T Consensus 67 ~~~vDgII~~~~~-------~~~-~~~~~~~~iPvV~~ 96 (302)
T 2qh8_A 67 GENPDVLVGIATP-------TAQ-ALVSATKTIPIVFT 96 (302)
T ss_dssp HTCCSEEEEESHH-------HHH-HHHHHCSSSCEEEE
T ss_pred hCCCCEEEECChH-------HHH-HHHhcCCCcCEEEE
Confidence 3479999997531 111 122235679998 6
No 365
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=31.03 E-value=94 Score=22.78 Aligned_cols=39 Identities=10% Similarity=-0.038 Sum_probs=24.0
Q ss_pred CCcEEEEeCC----chHHHHHHHHHHHhhhhhcCCceEEEEeC
Q 037843 12 KNPIVVIDNY----DSFTYNLCQYMGELELELSQGYHFEVYRN 50 (203)
Q Consensus 12 ~~~i~iid~~----~~~~~~l~~~l~~~~~~~~~g~~~~v~~~ 50 (203)
|++|++|... .|++..+.+.+.+...+...|.+++++..
T Consensus 1 MmkiLii~gSpr~~~s~t~~l~~~~~~~~~~~~~g~~v~~~dL 43 (212)
T 3r6w_A 1 MSRILAVHASPRGERSQSRRLAEVFLAAYREAHPQARVARREV 43 (212)
T ss_dssp CCCEEEEECCSCSTTCHHHHHHHHHHHHHHHHCTTCCEEEEES
T ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEEEC
Confidence 4689999643 36777777766554333233677777653
No 366
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}
Probab=31.01 E-value=1.8e+02 Score=22.29 Aligned_cols=60 Identities=13% Similarity=0.078 Sum_probs=35.1
Q ss_pred CCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCC--------------cccHHHHhc--cCCCEEEECCCCCC
Q 037843 11 DKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRND--------------ELTVAELKR--KKPRGVVISPGPGA 74 (203)
Q Consensus 11 ~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~--------------~~~~~~l~~--~~~dgiil~GG~~~ 74 (203)
|+++|+|.-..+..-..+++.|.+. |.+|..+... +.+.+.+.. .++|.||-+.|...
T Consensus 1 M~~~vlVtGatG~iG~~l~~~L~~~------g~~V~~~~r~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~d~Vih~a~~~~ 74 (311)
T 3m2p_A 1 MSLKIAVTGGTGFLGQYVVESIKND------GNTPIILTRSIGNKAINDYEYRVSDYTLEDLINQLNDVDAVVHLAATRG 74 (311)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCCC-----CCEEEECCCCHHHHHHHTTTCSEEEECCCCCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhC------CCEEEEEeCCCCcccCCceEEEEccccHHHHHHhhcCCCEEEEccccCC
Confidence 3466777765444456688888777 7776654321 011333332 27899998887765
Q ss_pred CC
Q 037843 75 PQ 76 (203)
Q Consensus 75 ~~ 76 (203)
..
T Consensus 75 ~~ 76 (311)
T 3m2p_A 75 SQ 76 (311)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 367
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=30.98 E-value=54 Score=26.61 Aligned_cols=76 Identities=16% Similarity=0.276 Sum_probs=40.5
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcc-cHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDEL-TVAELKRKKPRGVVISPGPGAPQESG-ISFRTVLELG 89 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~-~~~~l~~~~~dgiil~GG~~~~~~~~-~~~~~i~~~~ 89 (203)
+.+|+|+|....+...+.+.|+... |+.+...-.+.. -.+.+....+|.|++-= ..+...+ .+.+.+++..
T Consensus 3 ~~rVLIVDD~~~~r~~L~~~L~~~~-----g~~vv~~a~~~~eAl~~l~~~~pDlVllDi--~mp~~dGlell~~l~~~~ 75 (349)
T 1a2o_A 3 KIRVLSVDDSALMRQIMTEIINSHS-----DMEMVATAPDPLVARDLIKKFNPDVLTLDV--EMPRMDGLDFLEKLMRLR 75 (349)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTST-----TEEEEEEESSHHHHHHHHHHHCCSEEEEEC--CCSSSCHHHHHHHHHHSS
T ss_pred CCEEEEEECCHHHHHHHHHHHhcCC-----CcEEEEEeCCHHHHHHHHhccCCCEEEEEC--CCCCCCHHHHHHHHHhcC
Confidence 4689999987777777888777641 666332222211 12223334789988821 1122122 2344445433
Q ss_pred CCCcee
Q 037843 90 PTMPLF 95 (203)
Q Consensus 90 ~~~Pil 95 (203)
. .|++
T Consensus 76 p-~pVI 80 (349)
T 1a2o_A 76 P-MPVV 80 (349)
T ss_dssp C-CCEE
T ss_pred C-CcEE
Confidence 3 8887
No 368
>3lzd_A DPH2; diphthamide biosynthesis, radical SAM enzyme, gene triplicat iron-sulfur cluster, biosynthetic protein; 2.10A {Pyrococcus horikoshii} PDB: 3lzc_A
Probab=30.84 E-value=1.6e+02 Score=24.45 Aligned_cols=41 Identities=10% Similarity=0.148 Sum_probs=29.5
Q ss_pred HHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCC
Q 037843 26 YNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGP 72 (203)
Q Consensus 26 ~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~ 72 (203)
..+.+.+++. |....++-....+++.|.++++|+.|+.+=|
T Consensus 284 ~~L~~ll~~~------Gkk~y~i~vg~inp~KLanF~iD~fV~vaCP 324 (378)
T 3lzd_A 284 KRIVKLLKKH------GREARLIVMNDVNYHKLEGFPFEAYVVVACP 324 (378)
T ss_dssp HHHHHHHHHT------TCEEEEEEESSCCHHHHTTSCCSEEEECSCT
T ss_pred HHHHHHHHHc------CCcEEEEEeCCCCHHHHhCCCCCEEEEecCC
Confidence 3455555565 7776665555688999998889999997754
No 369
>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}
Probab=30.59 E-value=1.5e+02 Score=23.62 Aligned_cols=17 Identities=12% Similarity=0.016 Sum_probs=10.9
Q ss_pred cHHHHh-ccCCCEEEECC
Q 037843 54 TVAELK-RKKPRGVVISP 70 (203)
Q Consensus 54 ~~~~l~-~~~~dgiil~G 70 (203)
+.+++. +.++|+|+|+-
T Consensus 85 d~~ell~~~~iDaV~Iat 102 (393)
T 4fb5_A 85 DWRALIADPEVDVVSVTT 102 (393)
T ss_dssp CHHHHHHCTTCCEEEECS
T ss_pred CHHHHhcCCCCcEEEECC
Confidence 355554 34789999943
No 370
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=30.48 E-value=1.1e+02 Score=23.44 Aligned_cols=85 Identities=12% Similarity=0.126 Sum_probs=49.9
Q ss_pred CCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCc--eEEEEeCC-cccH-HHHh---cc-CCCEEEECCCCCCCCCcchHH
Q 037843 11 DKNPIVVIDNYDSFTYNLCQYMGELELELSQGY--HFEVYRND-ELTV-AELK---RK-KPRGVVISPGPGAPQESGISF 82 (203)
Q Consensus 11 ~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~--~~~v~~~~-~~~~-~~l~---~~-~~dgiil~GG~~~~~~~~~~~ 82 (203)
..+||.|+--+.+..+-..-++.+.-++--+|- +++.+|.- +... +.+. .+ +...+||.|+-+ -+.+.
T Consensus 86 ~gkrvii~gggaqv~qva~gai~eadrhnirgerisvdt~p~vge~~l~~av~av~~lpr~~~lvlags~m----gg~i~ 161 (223)
T 1y7p_A 86 FGKRVIILGGGALVSQVAIGAISEADRHNLRGERISVDTMPVVGEEEIAEAVKAVSRLHRAEVLVLAGGIM----GGKIT 161 (223)
T ss_dssp TCEEEEEEECHHHHHHHHHHHHHHHHHHHHTSCCEEEEEEECCSHHHHHHHHHHGGGSTTEEEEEEESSBC----CTHHH
T ss_pred cCcEEEEECCcHHHHHHHHhhcchhhhcccccceeeeecceecCHHHHHHHHHHHhhccccceeeEecccc----cchHH
Confidence 478999999888777766666655544433354 44556642 1111 1121 12 567888988754 24555
Q ss_pred HHHHHh-CCCCceeehhH
Q 037843 83 RTVLEL-GPTMPLFCMGL 99 (203)
Q Consensus 83 ~~i~~~-~~~~PilClG~ 99 (203)
+.++++ ++++|++||-|
T Consensus 162 ~~v~~~~~~~i~vi~l~m 179 (223)
T 1y7p_A 162 EEVKKLRKSGIRVISLSM 179 (223)
T ss_dssp HHHHHHGGGTCEEEEESC
T ss_pred HHHHHHHHCCCeEEEecC
Confidence 556664 35899986543
No 371
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=30.36 E-value=54 Score=24.98 Aligned_cols=76 Identities=13% Similarity=0.131 Sum_probs=42.7
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhcc-CCCEEEECCCCCCCCCcc-hHHHHHHHh-
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRK-KPRGVVISPGPGAPQESG-ISFRTVLEL- 88 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~-~~dgiil~GG~~~~~~~~-~~~~~i~~~- 88 (203)
+.+|+|+|-.......+...++.. |..+........-.+.+... .+|.|++ - ...|...+ .+.+.+++.
T Consensus 124 ~~~ILivDD~~~~~~~l~~~L~~~------~~~v~~a~~~~eal~~l~~~~~~dlvll-D-~~mP~~dG~~l~~~lr~~~ 195 (259)
T 3luf_A 124 QIEVLVVDDSRTSRHRTMAQLRKQ------LLQVHEASHAREALATLEQHPAIRLVLV-D-YYMPEIDGISLVRMLRERY 195 (259)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHTT------TCEEEEESSHHHHHHHHHHCTTEEEEEE-C-SCCSSSCHHHHHHHHHHHC
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHc------CcEEEEeCCHHHHHHHHhcCCCCCEEEE-c-CCCCCCCHHHHHHHHHhcc
Confidence 578999998776677777778777 88765543211112223222 2677776 1 11232233 245556653
Q ss_pred -CCCCcee
Q 037843 89 -GPTMPLF 95 (203)
Q Consensus 89 -~~~~Pil 95 (203)
...+||+
T Consensus 196 ~~~~~~ii 203 (259)
T 3luf_A 196 SKQQLAII 203 (259)
T ss_dssp CTTTSEEE
T ss_pred CCCCCeEE
Confidence 2468887
No 372
>3u7i_A FMN-dependent NADH-azoreductase 1; structural genomics, the center for structural genomics of I diseases, csgid, oxidoreductase; HET: MSE; 1.75A {Bacillus anthracis}
Probab=29.57 E-value=1.2e+02 Score=22.79 Aligned_cols=39 Identities=18% Similarity=0.111 Sum_probs=23.9
Q ss_pred CCcEEEEeCC------chHHHHHHHHHHHhhhhhcCCc-eEEEEeC
Q 037843 12 KNPIVVIDNY------DSFTYNLCQYMGELELELSQGY-HFEVYRN 50 (203)
Q Consensus 12 ~~~i~iid~~------~~~~~~l~~~l~~~~~~~~~g~-~~~v~~~ 50 (203)
|++|++|... .|++..+.+++.+...+...|. +++++..
T Consensus 4 MmkIL~I~gSpr~~~~~S~s~~L~~~~~~~l~~~~~~~~ev~~idL 49 (223)
T 3u7i_A 4 MNKTLIINAHPKVDDTSSVSIKVFKHFLESYKELISNNETIEQINL 49 (223)
T ss_dssp CCEEEEEECCTTTTCTTSHHHHHHHHHHHHHHHHCCSSCEEEEEET
T ss_pred cCEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhCCCCCeEEEEEC
Confidence 5789999643 4677777766654433333356 7877653
No 373
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Probab=29.47 E-value=2.7e+02 Score=23.80 Aligned_cols=55 Identities=16% Similarity=0.158 Sum_probs=37.8
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCccc--HHHHhc---------------cCCCEEEECCCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELT--VAELKR---------------KKPRGVVISPGP 72 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~--~~~l~~---------------~~~dgiil~GG~ 72 (203)
.++|++|--+.+....++++|.+. |+.|........+ .+.+.. .++|.||+|+|-
T Consensus 19 ~~~i~~iGiGg~Gms~lA~~l~~~------G~~V~~sD~~~~~~~~~~L~~~gi~~~~G~~~~~~~~~~d~vV~Spgi 90 (524)
T 3hn7_A 19 GMHIHILGICGTFMGSLALLARAL------GHTVTGSDANIYPPMSTQLEQAGVTIEEGYLIAHLQPAPDLVVVGNAM 90 (524)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCCCTTHHHHHHHTTCEEEESCCGGGGCSCCSEEEECTTC
T ss_pred CCEEEEEEecHhhHHHHHHHHHhC------CCEEEEECCCCCcHHHHHHHHCCCEEECCCCHHHcCCCCCEEEECCCc
Confidence 467999998887777789999998 9998876542111 122221 147889998875
No 374
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=29.43 E-value=77 Score=24.64 Aligned_cols=28 Identities=14% Similarity=0.259 Sum_probs=18.1
Q ss_pred CCCEEEECCCCCCCCCcchHHHHHHHhC---CCCcee
Q 037843 62 KPRGVVISPGPGAPQESGISFRTVLELG---PTMPLF 95 (203)
Q Consensus 62 ~~dgiil~GG~~~~~~~~~~~~~i~~~~---~~~Pil 95 (203)
++|.||..||.| .+....+.+. .++|+|
T Consensus 35 ~~D~vv~lGGDG------T~l~aa~~~~~~~~~~Pil 65 (272)
T 2i2c_A 35 EPEIVISIGGDG------TFLSAFHQYEERLDEIAFI 65 (272)
T ss_dssp SCSEEEEEESHH------HHHHHHHHTGGGTTTCEEE
T ss_pred CCCEEEEEcCcH------HHHHHHHHHhhcCCCCCEE
Confidence 578999889854 3344455542 268888
No 375
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A
Probab=29.38 E-value=1.8e+02 Score=21.79 Aligned_cols=37 Identities=8% Similarity=-0.029 Sum_probs=21.8
Q ss_pred ccCCCCCcEEEEeCCchH-HHHHHHHHHHhhhhhcCCceEEEEe
Q 037843 7 LSKNDKNPIVVIDNYDSF-TYNLCQYMGELELELSQGYHFEVYR 49 (203)
Q Consensus 7 ~~~~~~~~i~iid~~~~~-~~~l~~~l~~~~~~~~~g~~~~v~~ 49 (203)
+|.....++++|--.+++ -..+++.|.+. |+++.++.
T Consensus 2 mm~~l~~k~vlVTGas~gIG~~ia~~l~~~------G~~V~~~~ 39 (259)
T 4e6p_A 2 MMKRLEGKSALITGSARGIGRAFAEAYVRE------GATVAIAD 39 (259)
T ss_dssp --CTTTTCEEEEETCSSHHHHHHHHHHHHT------TCEEEEEE
T ss_pred ccccCCCCEEEEECCCcHHHHHHHHHHHHC------CCEEEEEe
Confidence 455555566666555544 45677777777 77776553
No 376
>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens}
Probab=29.15 E-value=1.5e+02 Score=23.57 Aligned_cols=42 Identities=19% Similarity=0.391 Sum_probs=27.3
Q ss_pred ccccccCCC-CCcE-EEEeCCc-----------hHHHHHHHHHHHhhhhhcCCceEEEEeC
Q 037843 3 EVLKLSKND-KNPI-VVIDNYD-----------SFTYNLCQYMGELELELSQGYHFEVYRN 50 (203)
Q Consensus 3 ~~~~~~~~~-~~~i-~iid~~~-----------~~~~~l~~~l~~~~~~~~~g~~~~v~~~ 50 (203)
|.+.++.+. +.|+ |||.|.. .-...+.+.|+.+ |..|++...
T Consensus 49 e~Y~m~~~~~~~r~aLII~N~~f~~l~~R~G~~~Da~~L~~~f~~L------GF~V~~~~d 103 (302)
T 3e4c_A 49 EIYPIMDKSSRTRLALIICNEEFDSIPRRTGAEVDITGMTMLLQNL------GYSVDVKKN 103 (302)
T ss_dssp GBCCCCCTTTCCCEEEEEECCSCSSSCCCTTHHHHHHHHHHHHHHT------TCEEEEEES
T ss_pred cccccCCCCCCccEEEEEECcCCCCCCCCCCcHHHHHHHHHHHHHC------CCEEEEeeC
Confidence 455666654 3454 6676652 1135688899999 999988764
No 377
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ...
Probab=28.97 E-value=1.2e+02 Score=21.37 Aligned_cols=42 Identities=17% Similarity=0.241 Sum_probs=26.7
Q ss_pred ccccccCCCCCcEEEEeCCc------------h--HHHHHHHHHHHhhhhhcCCceEEEEeC
Q 037843 3 EVLKLSKNDKNPIVVIDNYD------------S--FTYNLCQYMGELELELSQGYHFEVYRN 50 (203)
Q Consensus 3 ~~~~~~~~~~~~i~iid~~~------------~--~~~~l~~~l~~~~~~~~~g~~~~v~~~ 50 (203)
+.+++..+.+...+||++.. + -...+.+.|+.+ |..|++...
T Consensus 7 ~~Y~m~~~~rG~alIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~L------gF~V~~~~d 62 (146)
T 2dko_A 7 NSYKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNL------KYEVRNKND 62 (146)
T ss_dssp CBCCCCSSEEEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHT------TCEEEEEES
T ss_pred cCccCCCCCceEEEEEeccccCCCCCcccCCCCHHHHHHHHHHHHHC------CCEEEEeeC
Confidence 34555554444567776641 1 134688899999 999988764
No 378
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=28.87 E-value=80 Score=25.45 Aligned_cols=36 Identities=6% Similarity=0.070 Sum_probs=25.7
Q ss_pred cCCCCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeC
Q 037843 8 SKNDKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRN 50 (203)
Q Consensus 8 ~~~~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~ 50 (203)
|.+++++|+|+..+ .....+.++++++ |.++..+..
T Consensus 7 m~~~~~~ili~g~g-~~~~~~~~a~~~~------G~~v~~~~~ 42 (391)
T 1kjq_A 7 LRPAATRVMLLGSG-ELGKEVAIECQRL------GVEVIAVDR 42 (391)
T ss_dssp TSTTCCEEEEESCS-HHHHHHHHHHHTT------TCEEEEEES
T ss_pred CCCCCCEEEEECCC-HHHHHHHHHHHHc------CCEEEEEEC
Confidence 45556889999765 3455677788887 888877654
No 379
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=28.73 E-value=1.1e+02 Score=29.60 Aligned_cols=33 Identities=3% Similarity=0.103 Sum_probs=24.3
Q ss_pred CCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeC
Q 037843 11 DKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRN 50 (203)
Q Consensus 11 ~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~ 50 (203)
|+++|+|+..+ .....+.+.++++ |+++..+..
T Consensus 30 m~kkILI~grG-eia~~iiraar~l------Gi~vVaV~s 62 (1236)
T 3va7_A 30 PFETVLIANRG-EIAVRIMKTLKRM------GIKSVAVYS 62 (1236)
T ss_dssp SCSEEEECCCH-HHHHHHHHHHHHH------TCEEEEEEC
T ss_pred CCCEEEEEcCC-HHHHHHHHHHHHC------CCEEEEEEc
Confidence 45678887754 4566788999999 999877744
No 380
>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}
Probab=28.50 E-value=2e+02 Score=21.99 Aligned_cols=39 Identities=10% Similarity=0.006 Sum_probs=22.4
Q ss_pred cccccCCCCCcEEEEeCCchH-HHHHHHHHHHhhhhhcCCceEEEE
Q 037843 4 VLKLSKNDKNPIVVIDNYDSF-TYNLCQYMGELELELSQGYHFEVY 48 (203)
Q Consensus 4 ~~~~~~~~~~~i~iid~~~~~-~~~l~~~l~~~~~~~~~g~~~~v~ 48 (203)
.+.+|.+++.++++|--.++. -..+++.|.+. |+++.+.
T Consensus 16 ~n~~~~~l~~k~~lVTGas~GIG~~ia~~la~~------G~~V~~~ 55 (281)
T 3v2h_A 16 ENLYFQSMMTKTAVITGSTSGIGLAIARTLAKA------GANIVLN 55 (281)
T ss_dssp ------CCTTCEEEEETCSSHHHHHHHHHHHHT------TCEEEEE
T ss_pred cchhhhccCCCEEEEeCCCcHHHHHHHHHHHHC------CCEEEEE
Confidence 445566666677777655554 45677878777 8877665
No 381
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=28.43 E-value=93 Score=21.72 Aligned_cols=65 Identities=17% Similarity=0.090 Sum_probs=36.6
Q ss_pred CceEEEEeCCc--cc---HHHHhccCCCEEEECCCCCC--CCCcchHHHHHHH-hCCCCcee--ehhHHHHHHHhC
Q 037843 42 GYHFEVYRNDE--LT---VAELKRKKPRGVVISPGPGA--PQESGISFRTVLE-LGPTMPLF--CMGLKCIGEALE 107 (203)
Q Consensus 42 g~~~~v~~~~~--~~---~~~l~~~~~dgiil~GG~~~--~~~~~~~~~~i~~-~~~~~Pil--ClG~Qlla~a~g 107 (203)
|++++.+..-. -+ .+.+.+-++|.||.+..|.. +.+.+ ...+.+. ...++|++ =-+...+..++.
T Consensus 49 Gl~v~~v~k~~~eG~p~I~d~I~~geIdlVInt~~pl~~~~h~~D-~~~IrR~A~~~~IP~~T~latA~a~v~al~ 123 (134)
T 2xw6_A 49 GLTVEKLLSGPLGGDQQMGARVAEGRILAVIFFRDPLTAQPHEPD-VQALLRVCDVHGVPLATNPMAAEALIPWLQ 123 (134)
T ss_dssp CCCCEECSCGGGTHHHHHHHHHHTTCEEEEEEECCTTTCCTTSCC-SHHHHHHHHHHTCCEECSHHHHHHHHHHHH
T ss_pred CceEEEEEecCCCCcchHHHHHHCCCccEEEEccCcccCCCccch-HHHHHHHHHHcCCCeEcCHHHHHHHHHHHH
Confidence 88888764311 11 23344457899999988533 32222 2233333 34679999 345666666653
No 382
>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}
Probab=28.28 E-value=85 Score=23.07 Aligned_cols=36 Identities=8% Similarity=0.175 Sum_probs=19.9
Q ss_pred cCCCCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEe
Q 037843 8 SKNDKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYR 49 (203)
Q Consensus 8 ~~~~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~ 49 (203)
|+.++++|+|.-..++.-..+++.|.+. |+++..+.
T Consensus 1 M~~~~k~vlVtGasggiG~~~a~~l~~~------G~~V~~~~ 36 (234)
T 2ehd_A 1 MEGMKGAVLITGASRGIGEATARLLHAK------GYRVGLMA 36 (234)
T ss_dssp ---CCCEEEESSTTSHHHHHHHHHHHHT------TCEEEEEE
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHHC------CCEEEEEE
Confidence 3344444555554444456677777777 88776553
No 383
>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} SCOP: c.17.1.0 PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 4fxo_A 2wdp_A 3nkf_A 3s8e_A 4ejf_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B*
Probab=28.16 E-value=1.8e+02 Score=22.79 Aligned_cols=42 Identities=14% Similarity=0.330 Sum_probs=26.8
Q ss_pred ccccccCCCCCcEEEEeCCch--------------HHHHHHHHHHHhhhhhcCCceEEEEeC
Q 037843 3 EVLKLSKNDKNPIVVIDNYDS--------------FTYNLCQYMGELELELSQGYHFEVYRN 50 (203)
Q Consensus 3 ~~~~~~~~~~~~i~iid~~~~--------------~~~~l~~~l~~~~~~~~~g~~~~v~~~ 50 (203)
+.+++..+.+...|||+|..- -...+.+.|+.+ |..|++...
T Consensus 12 ~~Y~m~~~~rg~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~L------GF~V~~~~d 67 (278)
T 3od5_A 12 EKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDL------GFEVKCFND 67 (278)
T ss_dssp CBCCCCSSBCCEEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHHHT------TCEEEEEES
T ss_pred cccCCCCCCcCEEEEEeccccCCCCCCCCCCCCHHHHHHHHHHHHHC------CCEEEEecC
Confidence 455555554444677766420 134688889999 999988764
No 384
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=28.13 E-value=1.9e+02 Score=22.65 Aligned_cols=57 Identities=14% Similarity=0.005 Sum_probs=27.7
Q ss_pred CCcEEEEeC--CchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccH-------HHHhccCCCEEEECC
Q 037843 12 KNPIVVIDN--YDSFTYNLCQYMGELELELSQGYHFEVYRNDELTV-------AELKRKKPRGVVISP 70 (203)
Q Consensus 12 ~~~i~iid~--~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~-------~~l~~~~~dgiil~G 70 (203)
..+|.+|-. ...|...+.+.+++... ..|+.+.+......+. +.+...++||||+.+
T Consensus 61 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~--~~g~~~~~~~~~~~~~~~~~~~l~~l~~~~vdGiIi~~ 126 (349)
T 1jye_A 61 SLLIGVATSSLALHAPSQIVAAILSRAD--QLGASVVVSMVERSGVEACKTAVHNLLAQRVSGLIINY 126 (349)
T ss_dssp -CEEEEEESCTTSHHHHHHHHHHHHHHH--HTTCEEEEEECCSSSHHHHHHHHHHHHTTTCSCEEEES
T ss_pred CCEEEEEeCCCCcccHHHHHHHHHHHHH--HcCCEEEEEeCCCCcHHHHHHHHHHHHHCCCCEEEEec
Confidence 356766632 23343334333332211 1189887765432111 122334799999964
No 385
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=27.98 E-value=1e+02 Score=25.68 Aligned_cols=33 Identities=12% Similarity=0.083 Sum_probs=26.2
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRND 51 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~ 51 (203)
+.+|+|+-++ .+...+.+.|.+. |.++.++..+
T Consensus 4 ~~~viIiG~G-r~G~~va~~L~~~------g~~vvvId~d 36 (413)
T 3l9w_A 4 GMRVIIAGFG-RFGQITGRLLLSS------GVKMVVLDHD 36 (413)
T ss_dssp CCSEEEECCS-HHHHHHHHHHHHT------TCCEEEEECC
T ss_pred CCeEEEECCC-HHHHHHHHHHHHC------CCCEEEEECC
Confidence 4578888874 5778888999888 8999888765
No 386
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=27.96 E-value=1.9e+02 Score=21.75 Aligned_cols=76 Identities=12% Similarity=0.076 Sum_probs=36.7
Q ss_pred CcEEEEe--CCchHHHHHHHHHHHhhhhhcCCc-eEEEEeCCc-cc-----HHHHhccCCCEEEECCCCCCCCCcchHHH
Q 037843 13 NPIVVID--NYDSFTYNLCQYMGELELELSQGY-HFEVYRNDE-LT-----VAELKRKKPRGVVISPGPGAPQESGISFR 83 (203)
Q Consensus 13 ~~i~iid--~~~~~~~~l~~~l~~~~~~~~~g~-~~~v~~~~~-~~-----~~~l~~~~~dgiil~GG~~~~~~~~~~~~ 83 (203)
.+|.+|- ..+.|...+.+.+++... ..|. .+.+..... .. .+.+...++||||+.+... .....
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~-----~~~~~ 75 (309)
T 2fvy_A 3 TRIGVTIYKYDDNFMSVVRKAIEQDAK--AAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDP-----AAAGT 75 (309)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHH--TCTTEEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSG-----GGHHH
T ss_pred cEEEEEeccCCcHHHHHHHHHHHHHHH--hcCCeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCCc-----chhHH
Confidence 4566663 333444444444443311 1286 877765431 11 1223334799999966421 11223
Q ss_pred HHHHh-CCCCcee
Q 037843 84 TVLEL-GPTMPLF 95 (203)
Q Consensus 84 ~i~~~-~~~~Pil 95 (203)
.++.+ ..++|++
T Consensus 76 ~~~~~~~~~iPvV 88 (309)
T 2fvy_A 76 VIEKARGQNVPVV 88 (309)
T ss_dssp HHHHHHTTTCCEE
T ss_pred HHHHHHHCCCcEE
Confidence 33333 4568876
No 387
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=27.25 E-value=96 Score=22.14 Aligned_cols=36 Identities=11% Similarity=0.101 Sum_probs=21.4
Q ss_pred cEEEEeCC---chHHHHHHHHHHHhhhhh----cCCceEEEEe
Q 037843 14 PIVVIDNY---DSFTYNLCQYMGELELEL----SQGYHFEVYR 49 (203)
Q Consensus 14 ~i~iid~~---~~~~~~l~~~l~~~~~~~----~~g~~~~v~~ 49 (203)
+|+||... .+++..+.+++.+...+. ..|.+++++.
T Consensus 2 kilii~gS~r~~~~t~~la~~~~~~l~~~~~~~~~g~~v~~~d 44 (191)
T 1t0i_A 2 KVGIIMGSVRAKRVCPEIAAYVKRTIENSEELIDQKLKIQVVD 44 (191)
T ss_dssp EEEEEECCCCSSCSHHHHHHHHHHHHHTCTTTTTTTCEEEEEC
T ss_pred eEEEEeCCCCCCCchHHHHHHHHHHHHHhhccCCCCceEEEEe
Confidence 68888543 267888887765542211 0267777764
No 388
>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}
Probab=27.00 E-value=2.3e+02 Score=22.26 Aligned_cols=24 Identities=4% Similarity=-0.007 Sum_probs=17.1
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHh
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGEL 35 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~ 35 (203)
|.||+||-.+........+.++..
T Consensus 3 mirvgiIG~gG~i~~~h~~~l~~~ 26 (318)
T 3oa2_A 3 MKNFALIGAAGYIAPRHMRAIKDT 26 (318)
T ss_dssp CCEEEEETTTSSSHHHHHHHHHHT
T ss_pred ceEEEEECCCcHHHHHHHHHHHhC
Confidence 689999988544455666777666
No 389
>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}
Probab=26.88 E-value=2.3e+02 Score=22.48 Aligned_cols=53 Identities=15% Similarity=0.069 Sum_probs=37.9
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPG 71 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG 71 (203)
.++++||-.....-..+...|... |+.+++.+....+.++... +.|.||-+=|
T Consensus 161 Gk~vvVvGrs~iVG~plA~lL~~~------gAtVtv~hs~T~~L~~~~~-~ADIVI~Avg 213 (286)
T 4a5o_A 161 GMDAVVVGASNIVGRPMALELLLG------GCTVTVTHRFTRDLADHVS-RADLVVVAAG 213 (286)
T ss_dssp TCEEEEECTTSTTHHHHHHHHHHT------TCEEEEECTTCSCHHHHHH-TCSEEEECCC
T ss_pred CCEEEEECCCchhHHHHHHHHHHC------CCeEEEEeCCCcCHHHHhc-cCCEEEECCC
Confidence 578999987654566788888888 9999988765455555443 5688887544
No 390
>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6
Probab=26.63 E-value=1.7e+02 Score=22.72 Aligned_cols=52 Identities=15% Similarity=0.301 Sum_probs=34.4
Q ss_pred CCCcEEEEe-CCchHHHHHHHHHHHhhhhhcCCceEEEEeCCc-ccHHHHhccCCCEEEECC
Q 037843 11 DKNPIVVID-NYDSFTYNLCQYMGELELELSQGYHFEVYRNDE-LTVAELKRKKPRGVVISP 70 (203)
Q Consensus 11 ~~~~i~iid-~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~-~~~~~l~~~~~dgiil~G 70 (203)
++++|+||- .+ ..-..+.+.|... |.++.++..+. .+.++... +.|.||++=
T Consensus 20 ~~~~I~iIGg~G-~mG~~la~~l~~~------G~~V~~~~~~~~~~~~~~~~-~aDvVilav 73 (298)
T 2pv7_A 20 DIHKIVIVGGYG-KLGGLFARYLRAS------GYPISILDREDWAVAESILA-NADVVIVSV 73 (298)
T ss_dssp TCCCEEEETTTS-HHHHHHHHHHHTT------TCCEEEECTTCGGGHHHHHT-TCSEEEECS
T ss_pred CCCEEEEEcCCC-HHHHHHHHHHHhC------CCeEEEEECCcccCHHHHhc-CCCEEEEeC
Confidence 456899997 65 4556788888887 88887765432 23333332 579999853
No 391
>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda}
Probab=26.51 E-value=1.7e+02 Score=23.40 Aligned_cols=41 Identities=15% Similarity=0.346 Sum_probs=25.4
Q ss_pred cccccCCCCCcEEEEeCCch-------------HHHHHHHHHHHhhhhhcCCceEEEEeC
Q 037843 4 VLKLSKNDKNPIVVIDNYDS-------------FTYNLCQYMGELELELSQGYHFEVYRN 50 (203)
Q Consensus 4 ~~~~~~~~~~~i~iid~~~~-------------~~~~l~~~l~~~~~~~~~g~~~~v~~~ 50 (203)
.+++..+.+...|||.|..- -...|.+.|+.+ |..|++...
T Consensus 52 ~Y~m~~~~rg~aLIInN~~F~~~~l~~R~Gt~~Da~~L~~~f~~L------GF~V~~~~d 105 (310)
T 2nn3_C 52 YYNMNHKHRGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTL------GFKVTVFPN 105 (310)
T ss_dssp BCCCCSSBCCEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHT------TCEEEEEES
T ss_pred cccCCCCCcCEEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHC------CCEEEEecC
Confidence 44544444444577765410 134588889998 999988764
No 392
>2h4a_A YRAM (HI1655); perplasmic binding protein, lipoprotein; 1.35A {Haemophilus influenzae} PDB: 3ckm_A
Probab=26.18 E-value=1.3e+02 Score=23.94 Aligned_cols=79 Identities=8% Similarity=0.026 Sum_probs=40.0
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEE-EEeCC-cccH-HHHhc--cCCCEEEECCCCCCCCCcchHHHHHH
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFE-VYRND-ELTV-AELKR--KKPRGVVISPGPGAPQESGISFRTVL 86 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~-v~~~~-~~~~-~~l~~--~~~dgiil~GG~~~~~~~~~~~~~i~ 86 (203)
.++++||...+.|...+.+.|++.-.+. |..+. ...+. ..+. ..+.. .++|+|++.+.+ .+...+.+.++
T Consensus 122 ~k~vail~~~~~yG~~~~~~F~~~~~~~--Gg~vv~~~~y~~~~d~~~~l~~i~~~pDaV~~~~~~---~~~~~i~~~~~ 196 (325)
T 2h4a_A 122 VRNPLVAMPQNDLGQRVGNAFNVRWQQL--AGTDANIRYYNLPADVTYFVQENNSNTTALYAVASP---TELAEXKGYLT 196 (325)
T ss_dssp CCSCEEEEESSHHHHHHHHHHHHHHHHH--HSSCCEEEEESSTTHHHHHHHHSTTCCCEEEECCCH---HHHHHHHHHHT
T ss_pred CCeEEEEEcCCcHHHHHHHHHHHHHHHc--CCCcceeEecCCHHHHHHHHHhcCCCCCEEEEeCCH---HHHhhhhhhHh
Confidence 4677777555667666666554432222 33322 21221 1122 12222 479999996532 12222344444
Q ss_pred HhCCCCcee
Q 037843 87 ELGPTMPLF 95 (203)
Q Consensus 87 ~~~~~~Pil 95 (203)
....++|++
T Consensus 197 ~~g~~~pl~ 205 (325)
T 2h4a_A 197 NIVPNLAIY 205 (325)
T ss_dssp TTCTTCEEE
T ss_pred hcCCCCCEE
Confidence 446789999
No 393
>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*
Probab=26.00 E-value=2.4e+02 Score=22.10 Aligned_cols=24 Identities=4% Similarity=-0.065 Sum_probs=17.2
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHh
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGEL 35 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~ 35 (203)
|.||+||-.+........++++..
T Consensus 3 mirvgiIG~gG~i~~~h~~~l~~~ 26 (312)
T 3o9z_A 3 MTRFALTGLAGYIAPRHLKAIKEV 26 (312)
T ss_dssp CCEEEEECTTSSSHHHHHHHHHHT
T ss_pred ceEEEEECCChHHHHHHHHHHHhC
Confidence 689999998544455666777766
No 394
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=25.69 E-value=2.2e+02 Score=21.59 Aligned_cols=29 Identities=14% Similarity=0.153 Sum_probs=17.3
Q ss_pred ccCCCEEEECCCCCCCCCcchHHHHHHHhCCCCcee-e
Q 037843 60 RKKPRGVVISPGPGAPQESGISFRTVLELGPTMPLF-C 96 (203)
Q Consensus 60 ~~~~dgiil~GG~~~~~~~~~~~~~i~~~~~~~Pil-C 96 (203)
..++||||++|.. .. ..+.....++|++ |
T Consensus 60 ~~~vDgII~~~~~-------~~-~~~~~~~~~iPvV~~ 89 (295)
T 3lft_A 60 ANGNDLVVGIATP-------AA-QGLASATKDLPVIMA 89 (295)
T ss_dssp TSSCSEEEEESHH-------HH-HHHHHHCSSSCEEEE
T ss_pred hcCCCEEEECCcH-------HH-HHHHHcCCCCCEEEE
Confidence 3479999997521 11 1222334679998 6
No 395
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*
Probab=25.68 E-value=1.1e+02 Score=22.24 Aligned_cols=33 Identities=12% Similarity=0.104 Sum_probs=20.4
Q ss_pred CCCcEEEEeCCchHHHHHHHHHH-HhhhhhcCCceEEEEe
Q 037843 11 DKNPIVVIDNYDSFTYNLCQYMG-ELELELSQGYHFEVYR 49 (203)
Q Consensus 11 ~~~~i~iid~~~~~~~~l~~~l~-~~~~~~~~g~~~~v~~ 49 (203)
||++|+|.-..+..-..+++.|. +. |.++..+.
T Consensus 4 mmk~vlVtGasg~iG~~~~~~l~~~~------g~~V~~~~ 37 (221)
T 3r6d_A 4 MYXYITILGAAGQIAQXLTATLLTYT------DMHITLYG 37 (221)
T ss_dssp SCSEEEEESTTSHHHHHHHHHHHHHC------CCEEEEEE
T ss_pred eEEEEEEEeCCcHHHHHHHHHHHhcC------CceEEEEe
Confidence 34447777655445566777776 55 77776653
No 396
>1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+, oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4
Probab=25.29 E-value=1.2e+02 Score=27.18 Aligned_cols=58 Identities=10% Similarity=0.173 Sum_probs=31.4
Q ss_pred cccCCC---CCcEEEE-eCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEE
Q 037843 6 KLSKND---KNPIVVI-DNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVI 68 (203)
Q Consensus 6 ~~~~~~---~~~i~ii-d~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil 68 (203)
+||.+. +++++|+ ....+.+..+++.+.+.. ..|+.+.++..++.+..++.. .+.|||
T Consensus 2 ~~~~~~~~~~~k~~IlY~S~TG~te~~A~~l~~~l---~~~~~~~v~~m~~~d~~~l~~--~~~vl~ 63 (688)
T 1tll_A 2 KLMGQAMAKRVKATILYATETGKSQAYAKTLCEIF---KHAFDAKAMSMEEYDIVHLEH--EALVLV 63 (688)
T ss_dssp -------CCSCEEEEEEECSSSHHHHHHHHHHHHH---TTTSEEEEEETTTSCTTSGGG--CSEEEE
T ss_pred chhhhHhcCCCeEEEEEECCchHHHHHHHHHHHHH---hcCCCcEEeecccCChhHhcc--CceEEE
Confidence 356554 2356555 555566777777665542 237888888766555555653 466555
No 397
>3nxk_A Cytoplasmic L-asparaginase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; 2.40A {Campylobacter jejuni subsp}
Probab=25.27 E-value=2.1e+02 Score=23.19 Aligned_cols=32 Identities=19% Similarity=0.334 Sum_probs=20.5
Q ss_pred CCCEEEECC-CCCCCCCcchHHHHHHH-hCCCCcee
Q 037843 62 KPRGVVISP-GPGAPQESGISFRTVLE-LGPTMPLF 95 (203)
Q Consensus 62 ~~dgiil~G-G~~~~~~~~~~~~~i~~-~~~~~Pil 95 (203)
.++||||-| |.|+.. ..+.+.+++ .++++||.
T Consensus 245 g~~GiVle~~G~Gn~p--~~~~~~l~~a~~~Gi~VV 278 (334)
T 3nxk_A 245 GTKGIVVAGSGAGSIH--KNQKDVLKELLKKGLKVV 278 (334)
T ss_dssp TCCEEEEEEBTTTBCC--HHHHHHHHHHHTTTCEEE
T ss_pred CCCEEEEeeECCCCCc--HHHHHHHHHHHHCCCEEE
Confidence 578998843 223322 345666766 47889998
No 398
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=25.25 E-value=2.2e+02 Score=21.42 Aligned_cols=30 Identities=17% Similarity=0.425 Sum_probs=17.5
Q ss_pred CceEEEEe--CCccc------HHHHhccCCCEEEECCC
Q 037843 42 GYHFEVYR--NDELT------VAELKRKKPRGVVISPG 71 (203)
Q Consensus 42 g~~~~v~~--~~~~~------~~~l~~~~~dgiil~GG 71 (203)
|+.+.+.. ..... .+.+...++||||+.+.
T Consensus 31 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~ 68 (288)
T 1gud_A 31 GVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPL 68 (288)
T ss_dssp TCCEEEEECSSTTCHHHHHHHHHHHHTSSEEEEEECCS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 88887765 32111 12223347899999764
No 399
>3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472}
Probab=24.98 E-value=1.9e+02 Score=23.61 Aligned_cols=65 Identities=12% Similarity=0.065 Sum_probs=43.6
Q ss_pred HHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHh-CCCCcee-ehhHHHHHH
Q 037843 28 LCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGISFRTVLEL-GPTMPLF-CMGLKCIGE 104 (203)
Q Consensus 28 l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~~~~~i~~~-~~~~Pil-ClG~Qlla~ 104 (203)
|.++.++. |+.+..-++|..+.+.+...+.|.+=|+.+- . ....+|+++ ..++||+ =.||.-|.+
T Consensus 83 L~~~~~~~------Gi~~~st~fD~~svd~l~~~~v~~~KI~S~~-----~-~N~pLL~~va~~gKPviLstGmstl~E 149 (350)
T 3g8r_A 83 LVAEMKAN------GFKAICTPFDEESVDLIEAHGIEIIKIASCS-----F-TDWPLLERIARSDKPVVASTAGARRED 149 (350)
T ss_dssp HHHHHHHT------TCEEEEEECSHHHHHHHHHTTCCEEEECSSS-----T-TCHHHHHHHHTSCSCEEEECTTCCHHH
T ss_pred HHHHHHHc------CCcEEeccCCHHHHHHHHHcCCCEEEECccc-----c-cCHHHHHHHHhhCCcEEEECCCCCHHH
Confidence 44455555 9998877777666666666678999884331 1 124566664 4679999 888876654
No 400
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa}
Probab=24.95 E-value=68 Score=26.23 Aligned_cols=77 Identities=9% Similarity=-0.007 Sum_probs=41.4
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhc-cCCCEEEECCCCCCCCCcc-hHHHHHHHhC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKR-KKPRGVVISPGPGAPQESG-ISFRTVLELG 89 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~-~~~dgiil~GG~~~~~~~~-~~~~~i~~~~ 89 (203)
+.+|+|+|-.......+.+.|+... |..+.....-..-.+.+.. ..||.||+== ..|...+ .+.+.+++..
T Consensus 3 ~~~ILivDD~~~~~~~l~~~L~~~~-----~~~v~~a~~g~eal~~l~~~~~~DlvllDi--~mP~~dG~ell~~l~~~~ 75 (400)
T 3sy8_A 3 DLNVLVLEDEPFQRLVAVTALKKVV-----PGSILEAADGKEAVAILESCGHVDIAICDL--QMSGMDGLAFLRHASLSG 75 (400)
T ss_dssp CEEEEEECSSHHHHHHHHHHHHHHC-----SEEEEEESSHHHHHHHHHHHSCEEEEEECS--SCSSSCHHHHHHHHHHHT
T ss_pred CceEEEEcCCHHHHHHHHHHHHhcC-----CcEEEEecCHHHHHHHHhhCCCCCEEEEeC--CCCCCCHHHHHHHHHhcC
Confidence 3689999987777777888887741 5555433211111222333 2588888711 1122222 2344555555
Q ss_pred CCCcee
Q 037843 90 PTMPLF 95 (203)
Q Consensus 90 ~~~Pil 95 (203)
...||+
T Consensus 76 ~~~~ii 81 (400)
T 3sy8_A 76 KVHSVI 81 (400)
T ss_dssp CEEEEE
T ss_pred CCceEE
Confidence 556666
No 401
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*
Probab=24.86 E-value=1.7e+02 Score=22.85 Aligned_cols=42 Identities=14% Similarity=0.233 Sum_probs=27.6
Q ss_pred ccccccCCCCCcEEEEeCCc--h-------------------HHHHHHHHHHHhhhhhcCCceEEEEeC
Q 037843 3 EVLKLSKNDKNPIVVIDNYD--S-------------------FTYNLCQYMGELELELSQGYHFEVYRN 50 (203)
Q Consensus 3 ~~~~~~~~~~~~i~iid~~~--~-------------------~~~~l~~~l~~~~~~~~~g~~~~v~~~ 50 (203)
|.+++..+.+...+||+|.. . -...+.+.|+.+ |..|++...
T Consensus 8 ~~Y~m~~~~rG~aLIInn~~F~~~~~~~~~~~~l~~R~Gt~~D~~~L~~~f~~L------GF~V~~~~d 70 (271)
T 3h11_B 8 KVYQMKSKPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEEL------HFEIKPHDD 70 (271)
T ss_dssp CBCCCCSSSCCEEEEEECCCCSHHHHTCGGGTTCCCCTTHHHHHHHHHHHHHHT------TCEEEEEES
T ss_pred ccCCCCCCCCCEEEEEEchhcCcccccccccccCCCCCCcHHHHHHHHHHHHHC------CCEEEEEeC
Confidence 55666666555568887642 1 023577888888 999988764
No 402
>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0
Probab=24.71 E-value=1.2e+02 Score=22.99 Aligned_cols=58 Identities=9% Similarity=0.195 Sum_probs=34.5
Q ss_pred CCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeC---CcccHHHHhc----cCCCEEEECCCCCC
Q 037843 11 DKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRN---DELTVAELKR----KKPRGVVISPGPGA 74 (203)
Q Consensus 11 ~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~---~~~~~~~l~~----~~~dgiil~GG~~~ 74 (203)
|+++|+|.-..+..-..+++.|.+. |.+|..+.. |-.+.+.+.. .++|.||-..|...
T Consensus 4 M~m~ilVtGatG~iG~~l~~~L~~~------g~~V~~~~r~~~D~~d~~~~~~~~~~~~~d~vi~~a~~~~ 68 (287)
T 3sc6_A 4 MKERVIITGANGQLGKQLQEELNPE------EYDIYPFDKKLLDITNISQVQQVVQEIRPHIIIHCAAYTK 68 (287)
T ss_dssp -CEEEEEESTTSHHHHHHHHHSCTT------TEEEEEECTTTSCTTCHHHHHHHHHHHCCSEEEECCCCCC
T ss_pred ceeEEEEECCCCHHHHHHHHHHHhC------CCEEEEecccccCCCCHHHHHHHHHhcCCCEEEECCcccC
Confidence 3337777765443445677777666 888876532 2223343332 25899998887654
No 403
>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}
Probab=24.65 E-value=2.6e+02 Score=22.10 Aligned_cols=53 Identities=9% Similarity=0.037 Sum_probs=37.5
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPG 71 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG 71 (203)
..+++||-.+......+...|... |+.+++.+....+.++... +.|.||-+=|
T Consensus 161 Gk~vvVIG~s~iVG~p~A~lL~~~------gAtVtv~hs~t~~L~~~~~-~ADIVI~Avg 213 (285)
T 3l07_A 161 GAYAVVVGASNVVGKPVSQLLLNA------KATVTTCHRFTTDLKSHTT-KADILIVAVG 213 (285)
T ss_dssp TCEEEEECCCTTTHHHHHHHHHHT------TCEEEEECTTCSSHHHHHT-TCSEEEECCC
T ss_pred CCEEEEECCCchhHHHHHHHHHHC------CCeEEEEeCCchhHHHhcc-cCCEEEECCC
Confidence 578999977554567788888888 9999888654445555443 5788887554
No 404
>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}
Probab=24.56 E-value=2.6e+02 Score=22.09 Aligned_cols=53 Identities=11% Similarity=0.173 Sum_probs=38.0
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPG 71 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG 71 (203)
..+++||-.+...-..+...|... |+.+++.+....+.++... +.|.||-+=|
T Consensus 160 Gk~vvVvGrs~iVG~p~A~lL~~~------gAtVtv~h~~t~~L~~~~~-~ADIVI~Avg 212 (285)
T 3p2o_A 160 GKDAVIIGASNIVGRPMATMLLNA------GATVSVCHIKTKDLSLYTR-QADLIIVAAG 212 (285)
T ss_dssp TCEEEEECCCTTTHHHHHHHHHHT------TCEEEEECTTCSCHHHHHT-TCSEEEECSS
T ss_pred CCEEEEECCCchHHHHHHHHHHHC------CCeEEEEeCCchhHHHHhh-cCCEEEECCC
Confidence 578899987655567788888888 9999988765455555543 5788887554
No 405
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=24.52 E-value=72 Score=24.92 Aligned_cols=32 Identities=9% Similarity=0.107 Sum_probs=24.6
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRND 51 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~ 51 (203)
+++|+|+..+ ....+.+++++. |+++.++...
T Consensus 2 ~m~Ililg~g--~~~~l~~a~~~~------G~~v~~~~~~ 33 (334)
T 2r85_A 2 KVRIATYASH--SALQILKGAKDE------GFETIAFGSS 33 (334)
T ss_dssp CSEEEEESST--THHHHHHHHHHT------TCCEEEESCG
T ss_pred ceEEEEECCh--hHHHHHHHHHhC------CCEEEEEECC
Confidence 4689999887 456788888888 9998877543
No 406
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=24.11 E-value=2.5e+02 Score=21.91 Aligned_cols=92 Identities=15% Similarity=0.093 Sum_probs=47.7
Q ss_pred cccccccCCCCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEe------CCcccHHHH-----------hccCCC
Q 037843 2 NEVLKLSKNDKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYR------NDELTVAEL-----------KRKKPR 64 (203)
Q Consensus 2 ~~~~~~~~~~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~------~~~~~~~~l-----------~~~~~d 64 (203)
.+.+++++. .++|.|.|.+-+-...+ +.+++..+ ..++..+- |-..+.+++ ...++|
T Consensus 15 ~~~~~~~~~-~~~IgvfDSGvGGLtv~-~~i~~~lP----~e~~iy~~D~a~~PYG~ks~e~i~~~~~~~~~~L~~~g~d 88 (274)
T 3uhf_A 15 TENLYFQSN-AMKIGVFDSGVGGLSVL-KSLYEARL----FDEIIYYGDTARVPYGVKDKDTIIKFCLEALDFFEQFQID 88 (274)
T ss_dssp --CCCCCCS-CCEEEEEESSSTTHHHH-HHHHHTTC----CSEEEEEECTTTCCCTTSCHHHHHHHHHHHHHHHTTSCCS
T ss_pred cceeeccCC-CCeEEEEECCCChHHHH-HHHHHHCC----CCCEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
Confidence 455665554 67899999986544444 44444322 55665442 212344432 234789
Q ss_pred EEEECCCCCCCCCcchH-HHHHHHhCCCCcee--e-hhHHHHHHH
Q 037843 65 GVVISPGPGAPQESGIS-FRTVLELGPTMPLF--C-MGLKCIGEA 105 (203)
Q Consensus 65 giil~GG~~~~~~~~~~-~~~i~~~~~~~Pil--C-lG~Qlla~a 105 (203)
.||++= +....+ .+.+++.- ++||+ - -+...+...
T Consensus 89 ~IVIAC-----NTa~~~al~~lr~~~-~iPvigiiepa~~~a~~~ 127 (274)
T 3uhf_A 89 MLIIAC-----NTASAYALDALRAKA-HFPVYGVIDAGVEATIKA 127 (274)
T ss_dssp EEEECC-----HHHHHHSHHHHHHHC-SSCEECSHHHHHHHHHHH
T ss_pred EEEEeC-----CChhHHHHHHHHHhc-CCCEEcCCHHHHHHHHHh
Confidence 999932 122211 34455532 48998 2 455555544
No 407
>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B
Probab=24.06 E-value=1.4e+02 Score=23.34 Aligned_cols=19 Identities=32% Similarity=0.611 Sum_probs=15.3
Q ss_pred HHHHHHHHHhhhhhcCCceEEEEeC
Q 037843 26 YNLCQYMGELELELSQGYHFEVYRN 50 (203)
Q Consensus 26 ~~l~~~l~~~~~~~~~g~~~~v~~~ 50 (203)
..+.+.|+.+ |..|++...
T Consensus 59 ~~L~~~f~~L------GF~V~~~~d 77 (272)
T 1m72_A 59 DNLSKVLKTL------GFKVTVFPN 77 (272)
T ss_dssp HHHHHHHHHT------TCEEEEEES
T ss_pred HHHHHHHHHC------CCEEEEecC
Confidence 4588888998 999988764
No 408
>2ql9_A Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_A* 2ql5_A* 2qlb_A* 2qlf_A 2qlj_A* 3edr_A 3ibc_A 3ibf_A 1i51_A
Probab=23.89 E-value=1.7e+02 Score=21.21 Aligned_cols=20 Identities=25% Similarity=0.497 Sum_probs=15.8
Q ss_pred HHHHHHHHHHhhhhhcCCceEEEEeC
Q 037843 25 TYNLCQYMGELELELSQGYHFEVYRN 50 (203)
Q Consensus 25 ~~~l~~~l~~~~~~~~~g~~~~v~~~ 50 (203)
...|.+.|+.+ |..|.+...
T Consensus 71 ~~~L~~~F~~L------gF~V~v~~d 90 (173)
T 2ql9_A 71 AEALFKCFRSL------GFDVIVYND 90 (173)
T ss_dssp HHHHHHHHHHH------TEEEEEEES
T ss_pred HHHHHHHHHHC------CCEEEEEeC
Confidence 34688899999 999988764
No 409
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}
Probab=23.87 E-value=2.4e+02 Score=21.82 Aligned_cols=53 Identities=8% Similarity=0.154 Sum_probs=28.8
Q ss_pred CCcEEEEeCCchHHH-HHHHHHHHhhhhhcCCceEE-EEeCCc---------------ccHHHHhccCCCEEEECCC
Q 037843 12 KNPIVVIDNYDSFTY-NLCQYMGELELELSQGYHFE-VYRNDE---------------LTVAELKRKKPRGVVISPG 71 (203)
Q Consensus 12 ~~~i~iid~~~~~~~-~l~~~l~~~~~~~~~g~~~~-v~~~~~---------------~~~~~l~~~~~dgiil~GG 71 (203)
+.||+||-.+. ... .+.+.++.. .++.+. +...+. .+.+++.. ++|.|+++-.
T Consensus 6 ~~~igiIG~G~-~g~~~~~~~l~~~-----~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~ll~-~~D~V~i~tp 75 (308)
T 3uuw_A 6 NIKMGMIGLGS-IAQKAYLPILTKS-----ERFEFVGAFTPNKVKREKICSDYRIMPFDSIESLAK-KCDCIFLHSS 75 (308)
T ss_dssp CCEEEEECCSH-HHHHHTHHHHTSC-----SSSEEEEEECSCHHHHHHHHHHHTCCBCSCHHHHHT-TCSEEEECCC
T ss_pred cCcEEEEecCH-HHHHHHHHHHHhC-----CCeEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHHh-cCCEEEEeCC
Confidence 36899998864 222 255555443 156655 222221 13444544 7899998543
No 410
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=23.81 E-value=83 Score=24.66 Aligned_cols=38 Identities=5% Similarity=0.163 Sum_probs=21.4
Q ss_pred cCCCCCcEEEEeCCch-HHH---HHHHHHHHhhhhhcCCceEEEEeCC
Q 037843 8 SKNDKNPIVVIDNYDS-FTY---NLCQYMGELELELSQGYHFEVYRND 51 (203)
Q Consensus 8 ~~~~~~~i~iid~~~~-~~~---~l~~~l~~~~~~~~~g~~~~v~~~~ 51 (203)
|++|.+||+++..+.+ ... .+.+.|++. |.++.++-..
T Consensus 2 M~~m~mkIl~~~~~~gG~~~~~~~la~~L~~~------G~~V~v~~~~ 43 (364)
T 1f0k_A 2 MSGQGKRLMVMAGGTGGHVFPGLAVAHHLMAQ------GWQVRWLGTA 43 (364)
T ss_dssp -----CEEEEECCSSHHHHHHHHHHHHHHHTT------TCEEEEEECT
T ss_pred CCCCCcEEEEEeCCCccchhHHHHHHHHHHHc------CCEEEEEecC
Confidence 5554478999965432 222 456666666 9999887543
No 411
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3dij_A* 3ged_A 3geg_A*
Probab=23.80 E-value=2.3e+02 Score=21.06 Aligned_cols=30 Identities=13% Similarity=0.110 Sum_probs=17.6
Q ss_pred cEEEEeCCc-hHHHHHHHHHHHhhhhhcCCceEEEEe
Q 037843 14 PIVVIDNYD-SFTYNLCQYMGELELELSQGYHFEVYR 49 (203)
Q Consensus 14 ~i~iid~~~-~~~~~l~~~l~~~~~~~~~g~~~~v~~ 49 (203)
|+++|--.+ +.-..+.+.|.+. |+++.++.
T Consensus 3 k~vlVTGas~gIG~~ia~~l~~~------G~~V~~~~ 33 (247)
T 3dii_A 3 RGVIVTGGGHGIGKQICLDFLEA------GDKVCFID 33 (247)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHT------TCEEEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHC------CCEEEEEe
Confidence 444444333 4455677777776 77776653
No 412
>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*
Probab=23.63 E-value=2.8e+02 Score=22.11 Aligned_cols=53 Identities=11% Similarity=0.036 Sum_probs=37.3
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPG 71 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG 71 (203)
..+++||-.+...-..+.+.|... |+.+++.+....+..+... +.|.||.+=|
T Consensus 165 gk~vvVIG~s~iVG~p~A~lL~~~------gAtVtv~hs~t~~L~~~~~-~ADIVI~Avg 217 (301)
T 1a4i_A 165 GRHAVVVGRSKIVGAPMHDLLLWN------NATVTTCHSKTAHLDEEVN-KGDILVVATG 217 (301)
T ss_dssp TCEEEEECCCTTTHHHHHHHHHHT------TCEEEEECTTCSSHHHHHT-TCSEEEECCC
T ss_pred CCEEEEECCCchHHHHHHHHHHhC------CCeEEEEECCcccHHHHhc-cCCEEEECCC
Confidence 578999987654566778888887 9999988755455555443 5688886444
No 413
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=23.52 E-value=1.4e+02 Score=24.09 Aligned_cols=68 Identities=16% Similarity=0.216 Sum_probs=40.5
Q ss_pred CCcEEEEeCCch----HHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCc--chHHHHH
Q 037843 12 KNPIVVIDNYDS----FTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQES--GISFRTV 85 (203)
Q Consensus 12 ~~~i~iid~~~~----~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~--~~~~~~i 85 (203)
+-+||+|..-.. ..+.+.|.|..+. .+ | -++ ++.|||+ |.+....+. ..+.+++
T Consensus 224 ~g~ILfLEdv~e~~~~~py~idRmL~qL~--~~-G--------------~~~--~~~Giil-G~f~~~~~~~~~~~~~vl 283 (331)
T 4e5s_A 224 KDKILFLEEDSLTGTSTLKTFDRYLHSLM--QQ-Q--------------NFK--HVKGIVI-GKMQKGAECTIEDIQEMI 283 (331)
T ss_dssp TTEEEEEECCSTTGGGHHHHHHHHHHHHH--TS-T--------------TGG--GCCEEEE-ECCCGGGCCCHHHHHHHH
T ss_pred CCeEEEEEeCCCcCCCCHHHHHHHHHHHH--Hc-C--------------Ccc--cCCEEEE-ecCCCCCCCchhhHHHHH
Confidence 457888865555 5788888887771 00 1 122 4689999 655432211 2244556
Q ss_pred HHh--CCCCcee---ehhH
Q 037843 86 LEL--GPTMPLF---CMGL 99 (203)
Q Consensus 86 ~~~--~~~~Pil---ClG~ 99 (203)
+++ ..++||+ -+||
T Consensus 284 ~~~~~~~~iPv~~~~~~GH 302 (331)
T 4e5s_A 284 ASKPELAHIPIIANASFGH 302 (331)
T ss_dssp HTCGGGTTSCEEEEESCSS
T ss_pred HHHHhcCCCcEEECCCCCC
Confidence 553 3579999 5566
No 414
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=23.49 E-value=2.5e+02 Score=21.54 Aligned_cols=58 Identities=16% Similarity=0.077 Sum_probs=30.4
Q ss_pred CCcEEEEeC-CchHHHHHHHHHHHhhhhhcC-CceEEEEeCCccc------HHHHhccCCCEEEECCC
Q 037843 12 KNPIVVIDN-YDSFTYNLCQYMGELELELSQ-GYHFEVYRNDELT------VAELKRKKPRGVVISPG 71 (203)
Q Consensus 12 ~~~i~iid~-~~~~~~~l~~~l~~~~~~~~~-g~~~~v~~~~~~~------~~~l~~~~~dgiil~GG 71 (203)
..+|.++-. .+.|...+.+.+++.. ... |+.+.+....... .+.+...++||||+.+.
T Consensus 6 ~~~Igvi~~~~~~~~~~~~~gi~~~a--~~~~g~~l~i~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 71 (325)
T 2x7x_A 6 HFRIGVAQCSDDSWRHKMNDEILREA--MFYNGVSVEIRSAGDDNSKQAEDVHYFMDEGVDLLIISAN 71 (325)
T ss_dssp CCEEEEEESCCSHHHHHHHHHHHHHH--TTSSSCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred CeEEEEEecCCCHHHHHHHHHHHHHH--HHcCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 456766633 2334444555555432 223 7888776543111 12233347999999754
No 415
>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster}
Probab=23.48 E-value=1.9e+02 Score=23.15 Aligned_cols=41 Identities=17% Similarity=0.348 Sum_probs=25.4
Q ss_pred cccccCC-CCCcEEEEeCCc------------hHHHHHHHHHHHhhhhhcCCceEEEEeC
Q 037843 4 VLKLSKN-DKNPIVVIDNYD------------SFTYNLCQYMGELELELSQGYHFEVYRN 50 (203)
Q Consensus 4 ~~~~~~~-~~~~i~iid~~~------------~~~~~l~~~l~~~~~~~~~g~~~~v~~~ 50 (203)
.++++.+ .+...|||.|.. --...|.+.|+.+ |..|++...
T Consensus 52 ~Y~m~~~~~rg~aLIInN~~F~~~~~~R~Gt~~D~~~L~~~f~~L------GF~V~~~~d 105 (316)
T 2fp3_A 52 TYKMQSRFNRGVLLMVNIMDYPDQNRRRIGAEKDSKSLIHLFQEL------NFTIFPYGN 105 (316)
T ss_dssp BCCCCCSSCSEEEEEEECCCCSSTTSCCTTHHHHHHHHHHHHHHT------TEEEEEECS
T ss_pred cccCCCCCCCcEEEEEeCcccCCCCCCCCCcHHHHHHHHHHHHHC------CCEEEEccC
Confidence 4555544 434457776542 0134588889998 999987653
No 416
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Probab=23.41 E-value=1.3e+02 Score=23.04 Aligned_cols=38 Identities=3% Similarity=0.072 Sum_probs=26.1
Q ss_pred ccCCCCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeC
Q 037843 7 LSKNDKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRN 50 (203)
Q Consensus 7 ~~~~~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~ 50 (203)
.|..+|++|+||-..+..-..+.+.|... |.++.++..
T Consensus 6 ~~~~mmm~I~iIG~tG~mG~~la~~l~~~------g~~V~~~~r 43 (286)
T 3c24_A 6 KNDVGPKTVAILGAGGKMGARITRKIHDS------AHHLAAIEI 43 (286)
T ss_dssp CCSCCCCEEEEETTTSHHHHHHHHHHHHS------SSEEEEECC
T ss_pred cccccCCEEEEECCCCHHHHHHHHHHHhC------CCEEEEEEC
Confidence 45666678999987223456677777777 888776543
No 417
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=23.09 E-value=1.1e+02 Score=25.01 Aligned_cols=40 Identities=15% Similarity=0.126 Sum_probs=25.0
Q ss_pred ccccccCCC--CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEe
Q 037843 3 EVLKLSKND--KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYR 49 (203)
Q Consensus 3 ~~~~~~~~~--~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~ 49 (203)
|.+-.++-| +++|+||..+ ....++.++++++ |+++.++.
T Consensus 13 ~~~~~~~~mm~~~~I~ilGgG-~lg~~l~~aa~~l------G~~v~~~d 54 (403)
T 3k5i_A 13 ENLYFQGHMWNSRKVGVLGGG-QLGRMLVESANRL------NIQVNVLD 54 (403)
T ss_dssp --------CCSCCEEEEECCS-HHHHHHHHHHHHH------TCEEEEEE
T ss_pred cceeEeccCCCCCEEEEECCC-HHHHHHHHHHHHC------CCEEEEEE
Confidence 455556666 4678888765 4567788899998 99988776
No 418
>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*
Probab=23.07 E-value=2.6e+02 Score=21.60 Aligned_cols=60 Identities=8% Similarity=-0.076 Sum_probs=34.8
Q ss_pred CCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeC------------CcccHHHHhc--cCCCEEEECCCCCCCC
Q 037843 11 DKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRN------------DELTVAELKR--KKPRGVVISPGPGAPQ 76 (203)
Q Consensus 11 ~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~------------~~~~~~~l~~--~~~dgiil~GG~~~~~ 76 (203)
.+++|+|.-..+..-..+++.|.+. |.+|..+.. |-.+.+.+.. .++|.||-+.|.....
T Consensus 18 ~~~~vlVtGatG~iG~~l~~~L~~~------G~~V~~~~r~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A~~~~~~ 91 (347)
T 4id9_A 18 GSHMILVTGSAGRVGRAVVAALRTQ------GRTVRGFDLRPSGTGGEEVVGSLEDGQALSDAIMGVSAVLHLGAFMSWA 91 (347)
T ss_dssp ---CEEEETTTSHHHHHHHHHHHHT------TCCEEEEESSCCSSCCSEEESCTTCHHHHHHHHTTCSEEEECCCCCCSS
T ss_pred CCCEEEEECCCChHHHHHHHHHHhC------CCEEEEEeCCCCCCCccEEecCcCCHHHHHHHHhCCCEEEECCcccCcc
Confidence 3466777665443445688888777 877765532 1123333332 2789999888876544
No 419
>3s2y_A Chromate reductase; uranium reductase, oxidoreductase; HET: FMN PG4; 2.24A {Gluconacetobacter hansenii}
Probab=28.43 E-value=18 Score=26.93 Aligned_cols=34 Identities=18% Similarity=0.184 Sum_probs=20.3
Q ss_pred CCcEEEEeCC---chHHHHHHHHHHHhhhhhcCCceEEEE
Q 037843 12 KNPIVVIDNY---DSFTYNLCQYMGELELELSQGYHFEVY 48 (203)
Q Consensus 12 ~~~i~iid~~---~~~~~~l~~~l~~~~~~~~~g~~~~v~ 48 (203)
+++|++|... .|++..+.+++.+..++ |++++++
T Consensus 6 ~mkIliI~gS~r~~s~t~~la~~~~~~~~~---g~~v~~i 42 (199)
T 3s2y_A 6 PLHFVTLLGSLRKASFNAAVARALPEIAPE---GIAITPL 42 (199)
Confidence 4578888432 35666677776554221 6666666
No 420
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Probab=22.57 E-value=3.4e+02 Score=22.73 Aligned_cols=24 Identities=8% Similarity=0.048 Sum_probs=19.6
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHh
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGEL 35 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~ 35 (203)
..+|+||-+..+..-...+.++..
T Consensus 293 g~rvaiitngGG~~~laaD~~~~~ 316 (457)
T 2csu_A 293 GNKVAIMTNAGGPGVLTADELDKR 316 (457)
T ss_dssp SSEEEEEESCHHHHHHHHHHHHTT
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc
Confidence 478999999988777777877776
No 421
>3ief_A TRNA (guanine-N(1)-)-methyltransferase; niaid, ssgcid, seattle structural genomics center for infectious diseases; 2.50A {Bartonella henselae}
Probab=22.27 E-value=1e+02 Score=23.69 Aligned_cols=77 Identities=10% Similarity=0.072 Sum_probs=42.5
Q ss_pred CCCcEEEEeCC----ch-HHHH-HHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCcchHHHH
Q 037843 11 DKNPIVVIDNY----DS-FTYN-LCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQESGISFRT 84 (203)
Q Consensus 11 ~~~~i~iid~~----~~-~~~~-l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~~~~~~~ 84 (203)
|++++-||.-. .+ +..+ +.+++++- =+++.++..-+.+.+.-. ..|---..||+|.+-....+.+.
T Consensus 2 m~Mr~dvlTlFPe~f~~~l~~si~grA~~~g------l~~i~~~n~Rdf~~dkh~--~VDD~PyGGGaGMVm~~ePl~~a 73 (233)
T 3ief_A 2 MKFQARVLTLYPEMFPGFLGCSLAGQALKQG------IWSLETVQIRDFALDKHH--SVDDTPAGGGAGMVMRADVLAAA 73 (233)
T ss_dssp -CEEEEEEESCGGGSSGGGGSHHHHHHHHTT------SEEEEEEEGGGGC-------CCEECCTTCCSSCEECHHHHHHH
T ss_pred CceEEEEEEEChHHhhhHhhccHHHHHHHCC------CeEEEEEcchhhcCCCCc--ccCCCCCCCCCCcEeeHHHHHHH
Confidence 34677777433 22 2333 44555553 457777765444444433 56888889999987766666666
Q ss_pred HHHhCCCCcee
Q 037843 85 VLELGPTMPLF 95 (203)
Q Consensus 85 i~~~~~~~Pil 95 (203)
+..+....+++
T Consensus 74 l~~~~~~~~vI 84 (233)
T 3ief_A 74 LDSCPNDSPRL 84 (233)
T ss_dssp HTTSCCCSCEE
T ss_pred HHHhhcCCCEE
Confidence 66653323444
No 422
>2j32_A Caspase-3; Pro-caspase3, thiol protease, hydrolase, hydrolase-hydrolase inhibitor complex; 1.30A {Homo sapiens} PDB: 2j30_A 3h0e_A* 2j33_A 3pd1_A 2j31_A 3pcx_A 1nms_A* 1nmq_A* 3deh_A* 3dei_A* 3dej_A* 3dek_A* 3pd0_A 3itn_A 1qx3_A
Probab=22.01 E-value=1.8e+02 Score=22.27 Aligned_cols=19 Identities=21% Similarity=0.256 Sum_probs=15.3
Q ss_pred HHHHHHHHHhhhhhcCCceEEEEeC
Q 037843 26 YNLCQYMGELELELSQGYHFEVYRN 50 (203)
Q Consensus 26 ~~l~~~l~~~~~~~~~g~~~~v~~~ 50 (203)
..+.+.|+.+ |..|++...
T Consensus 44 ~~l~~~f~~L------gF~V~~~~d 62 (250)
T 2j32_A 44 ANLRETFRNL------KYEVRNKND 62 (250)
T ss_dssp HHHHHHHHHT------TCEEEEEES
T ss_pred HHHHHHHHHC------CCEEEEEeC
Confidence 4688889998 999987754
No 423
>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A
Probab=21.48 E-value=2.4e+02 Score=22.19 Aligned_cols=53 Identities=15% Similarity=0.293 Sum_probs=36.9
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPG 71 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG 71 (203)
..+++||-.+......+...|... |+.+++......+.++... +.|.||-+=|
T Consensus 150 Gk~vvVvG~s~iVG~plA~lL~~~------gAtVtv~~~~t~~L~~~~~-~ADIVI~Avg 202 (276)
T 3ngx_A 150 ENTVTIVNRSPVVGRPLSMMLLNR------NYTVSVCHSKTKDIGSMTR-SSKIVVVAVG 202 (276)
T ss_dssp SCEEEEECCCTTTHHHHHHHHHHT------TCEEEEECTTCSCHHHHHH-HSSEEEECSS
T ss_pred CCEEEEEcCChHHHHHHHHHHHHC------CCeEEEEeCCcccHHHhhc-cCCEEEECCC
Confidence 578899987654566778888888 9999988765455555443 4688876444
No 424
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ...
Probab=21.45 E-value=75 Score=26.35 Aligned_cols=32 Identities=16% Similarity=0.158 Sum_probs=23.9
Q ss_pred CCCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEe
Q 037843 11 DKNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYR 49 (203)
Q Consensus 11 ~~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~ 49 (203)
||++|+|+..+ .....+.+.++++ |+++.++.
T Consensus 1 m~k~ilI~g~g-~~~~~~~~a~~~~------G~~vv~v~ 32 (449)
T 2w70_A 1 MLDKIVIANRG-EIALRILRACKEL------GIKTVAVH 32 (449)
T ss_dssp CCSEEEECCCH-HHHHHHHHHHHHH------TCEEEEEE
T ss_pred CCceEEEeCCc-HHHHHHHHHHHHc------CCeEEEEe
Confidence 46789999864 4556688888888 99887663
No 425
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=21.09 E-value=1.4e+02 Score=23.91 Aligned_cols=68 Identities=12% Similarity=0.099 Sum_probs=38.7
Q ss_pred CCcEEEEe-CCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCCCc--chHHHHHHHh
Q 037843 12 KNPIVVID-NYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQES--GISFRTVLEL 88 (203)
Q Consensus 12 ~~~i~iid-~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~~~--~~~~~~i~~~ 88 (203)
+-+||+|. ......+.+.|.|..+ ... .-++ ++.|||+ |.+...... ..+.+++++.
T Consensus 224 ~g~ILflE~d~~e~p~~idR~L~qL------~~~-----------G~~~--~~~Giil-G~f~~~~~~~~~~~~~vl~~~ 283 (327)
T 4h1h_A 224 AGTILFIEDDFMTIPETFDRDLESL------LSQ-----------PGAD--EIEGMVI-GRFQQKTAMTAEKLAYIIETK 283 (327)
T ss_dssp TTEEEEEECCTTCCHHHHHHHHHHH------TTS-----------TTGG--GCCEEEE-ECCCGGGCCCHHHHHHHHHTC
T ss_pred CCCEEEEEeccCCCHHHHHHHHHHH------Hhc-----------Cccc--cCCEEEE-eecCCCCCCchhhHHHHHHHH
Confidence 46789997 3444567788888776 110 0122 4689999 554332211 1234555552
Q ss_pred --CCCCcee---ehhH
Q 037843 89 --GPTMPLF---CMGL 99 (203)
Q Consensus 89 --~~~~Pil---ClG~ 99 (203)
..++||+ =+||
T Consensus 284 ~~~~~iPv~~~~~~GH 299 (327)
T 4h1h_A 284 TALQKIPVISGADFGH 299 (327)
T ss_dssp GGGTTSCEEEEESCSS
T ss_pred hhcCCCcEEECCCCcC
Confidence 3579999 4555
No 426
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=21.07 E-value=3e+02 Score=21.52 Aligned_cols=56 Identities=13% Similarity=0.058 Sum_probs=29.6
Q ss_pred CCcEEEEeCC-------chHHHHHHHHHHHhhhhhcCCceEEEEeCCc-c--cH----HHHhccCCCEEEECCC
Q 037843 12 KNPIVVIDNY-------DSFTYNLCQYMGELELELSQGYHFEVYRNDE-L--TV----AELKRKKPRGVVISPG 71 (203)
Q Consensus 12 ~~~i~iid~~-------~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~-~--~~----~~l~~~~~dgiil~GG 71 (203)
...|.+|-.. +.|...+.+.+++. +. |..+.++..+. . .. +.+...++||||+.+.
T Consensus 68 s~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~---a~-g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~ 137 (366)
T 3h5t_A 68 AGAIGVLLTEDLTYAFEDMASVDFLAGVAQA---AG-DTQLTLIPASPASSVDHVSAQQLVNNAAVDGVVIYSV 137 (366)
T ss_dssp CCEEEEEESSCTTHHHHSHHHHHHHHHHHHH---SS-SCEEEEEECCCCTTCCHHHHHHHHHTCCCSCEEEESC
T ss_pred CCEEEEEecCCccccccCHHHHHHHHHHHHH---Hh-hCCEEEEEcCCCccHHHHHHHHHHHhCCCCEEEEecC
Confidence 3567666432 12223344444443 23 88887765431 1 11 2233447999999764
No 427
>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450 reductase, diflavin reductase, FAD, FMN-binding, electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces cerevisiae} PDB: 2bn4_A* 2bf4_A*
Probab=20.83 E-value=1.6e+02 Score=26.32 Aligned_cols=54 Identities=7% Similarity=0.030 Sum_probs=33.2
Q ss_pred CCcEEEE-eCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCC-CEEEE
Q 037843 12 KNPIVVI-DNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKP-RGVVI 68 (203)
Q Consensus 12 ~~~i~ii-d~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~-dgiil 68 (203)
|++|+|+ ....+++..+++.+.+.... ..|+.+.++..++.+.+++. ++ +.|||
T Consensus 49 ~~ki~IlY~S~tGnte~~A~~ia~~l~~-~~g~~v~v~~l~~~~~~~l~--~~~~~vi~ 104 (682)
T 2bpo_A 49 NKNYLVLYASQTGTAEGFAKAFSKELVA-KFNLNVMCADVENYDFESLN--DVPVIVSI 104 (682)
T ss_dssp TCSEEEEEECSSSHHHHHHHHHHHHHHH-HHCCCEEEEETTSSCGGGGG--GCCSEEEE
T ss_pred CCeEEEEEECCchHHHHHHHHHHHHhHH-hcCCceEEeehHHCCHHHHh--hcCCeEEE
Confidence 5567666 55556777777666443210 11788888876655566665 46 88777
No 428
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=20.81 E-value=2.4e+02 Score=20.23 Aligned_cols=56 Identities=20% Similarity=0.199 Sum_probs=31.6
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeC-----------------CcccHHHHhc--cCCCEEEECCCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRN-----------------DELTVAELKR--KKPRGVVISPGP 72 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~-----------------~~~~~~~l~~--~~~dgiil~GG~ 72 (203)
|++|+|.-..+..-..+++.|.+. |.++..+.. |-.+.+++.. .++|.||-.-|+
T Consensus 4 m~~ilItGatG~iG~~l~~~L~~~------g~~V~~~~r~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~~ 77 (227)
T 3dhn_A 4 VKKIVLIGASGFVGSALLNEALNR------GFEVTAVVRHPEKIKIENEHLKVKKADVSSLDEVCEVCKGADAVISAFNP 77 (227)
T ss_dssp CCEEEEETCCHHHHHHHHHHHHTT------TCEEEEECSCGGGCCCCCTTEEEECCCTTCHHHHHHHHTTCSEEEECCCC
T ss_pred CCEEEEEcCCchHHHHHHHHHHHC------CCEEEEEEcCcccchhccCceEEEEecCCCHHHHHHHhcCCCEEEEeCcC
Confidence 467777765444445677777776 776655421 1123333332 267888877665
Q ss_pred C
Q 037843 73 G 73 (203)
Q Consensus 73 ~ 73 (203)
.
T Consensus 78 ~ 78 (227)
T 3dhn_A 78 G 78 (227)
T ss_dssp -
T ss_pred C
Confidence 4
No 429
>3g23_A Peptidase U61, LD-carboxypeptidase A; flavodoxin-like fold, catalytic triad, merops S66 unassigned peptidases family; HET: MSE; 1.89A {Novosphingobium aromaticivorans}
Probab=20.65 E-value=79 Score=24.81 Aligned_cols=68 Identities=7% Similarity=0.066 Sum_probs=37.3
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEECCCCCCCC--C--c-chHHHHHH
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVAELKRKKPRGVVISPGPGAPQ--E--S-GISFRTVL 86 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil~GG~~~~~--~--~-~~~~~~i~ 86 (203)
+-+|++|.--....+.+.|.|..+. ...-++ ++.|||+ |.+.... + . ..+.+.++
T Consensus 185 ~g~ILflEdv~e~py~idRmL~qL~-----------------~~G~~~--~~~Giil-G~f~~~~~~~~~~~~~~~~vl~ 244 (274)
T 3g23_A 185 SGHVVMIEEVAEHHYAVDRLLFHVT-----------------SCLADA--GIAGLRL-GRVSDVPENDRPFGCSVEEMAR 244 (274)
T ss_dssp TTCEEEEEEESCCHHHHHHHHHHHH-----------------HHHTTT--TCSEEEE-EEEECCCSSSCCCSSCHHHHHH
T ss_pred CCcEEEEEeCCCCHHHHHHHHHHHH-----------------HcCCcc--cCCeEEE-eccccCCCCCcccchhHHHHHH
Confidence 4578888543345677777777761 011122 5689998 5543321 1 1 12344554
Q ss_pred Hh--CCCCcee---ehhH
Q 037843 87 EL--GPTMPLF---CMGL 99 (203)
Q Consensus 87 ~~--~~~~Pil---ClG~ 99 (203)
+. ..++||+ -+||
T Consensus 245 ~~~~~~~iPV~~~~~~GH 262 (274)
T 3g23_A 245 HWCHRAGIAFLGTADIGH 262 (274)
T ss_dssp HHHHHHTCCEEEECSCSS
T ss_pred HHHhhCCCeEEECCCCCC
Confidence 42 2369999 5565
No 430
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=20.62 E-value=1.4e+02 Score=21.82 Aligned_cols=31 Identities=19% Similarity=0.387 Sum_probs=21.1
Q ss_pred cEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCC
Q 037843 14 PIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRND 51 (203)
Q Consensus 14 ~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~ 51 (203)
+|+|+-. +.+...+++.|.+. |.++.++..+
T Consensus 2 ~iiIiG~-G~~G~~la~~L~~~------g~~v~vid~~ 32 (218)
T 3l4b_C 2 KVIIIGG-ETTAYYLARSMLSR------KYGVVIINKD 32 (218)
T ss_dssp CEEEECC-HHHHHHHHHHHHHT------TCCEEEEESC
T ss_pred EEEEECC-CHHHHHHHHHHHhC------CCeEEEEECC
Confidence 5777765 44566777777776 7777777654
No 431
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}
Probab=20.49 E-value=3.3e+02 Score=21.72 Aligned_cols=53 Identities=11% Similarity=0.137 Sum_probs=29.8
Q ss_pred CcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEE-eCCc----------------ccHHHHhc-cCCCEEEECCC
Q 037843 13 NPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVY-RNDE----------------LTVAELKR-KKPRGVVISPG 71 (203)
Q Consensus 13 ~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~-~~~~----------------~~~~~l~~-~~~dgiil~GG 71 (203)
.||+||-.+..-...+...++.. ++++.-+ ..+. .+.+++.+ .++|+|+|+..
T Consensus 27 irvgiiG~G~~~~~~~~~~~~~~------~~~lvav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~I~tp 97 (361)
T 3u3x_A 27 LRFAAVGLNHNHIYGQVNCLLRA------GARLAGFHEKDDALAAEFSAVYADARRIATAEEILEDENIGLIVSAAV 97 (361)
T ss_dssp CEEEEECCCSTTHHHHHHHHHHT------TCEEEEEECSCHHHHHHHHHHSSSCCEESCHHHHHTCTTCCEEEECCC
T ss_pred cEEEEECcCHHHHHHHHHHhhcC------CcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCC
Confidence 67999988753334455555544 6665433 2111 13445443 35899999554
No 432
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=20.40 E-value=2.8e+02 Score=20.94 Aligned_cols=52 Identities=6% Similarity=-0.001 Sum_probs=28.7
Q ss_pred CcEEEEeCC--chHHHHH----HHHHHHhhhhhcCCceEEEEeCCcccH-------HHHhccCCCEEEECCC
Q 037843 13 NPIVVIDNY--DSFTYNL----CQYMGELELELSQGYHFEVYRNDELTV-------AELKRKKPRGVVISPG 71 (203)
Q Consensus 13 ~~i~iid~~--~~~~~~l----~~~l~~~~~~~~~g~~~~v~~~~~~~~-------~~l~~~~~dgiil~GG 71 (203)
.+|.++-.. +.|...+ .+.+++. |+.+.+.... .+. +.+...++||||+.+.
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~------g~~l~~~~~~-~~~~~~~~~i~~l~~~~vdgiIi~~~ 67 (306)
T 2vk2_A 3 LTVGFSQVGSESGWRAAETNVAKSEAEKR------GITLKIADGQ-QKQENQIKAVRSFVAQGVDAIFIAPV 67 (306)
T ss_dssp CEEEEEECCCCSHHHHHHHHHHHHHHHHH------TCEEEEEECT-TCHHHHHHHHHHHHHHTCSEEEECCS
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHHc------CCEEEEeCCC-CCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 467666432 2333333 3445555 8988776543 122 1222347999999764
No 433
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=20.36 E-value=4e+02 Score=22.60 Aligned_cols=99 Identities=14% Similarity=0.119 Sum_probs=47.3
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHH---HHhccCCCEEEECCCCCCCCC------c--ch
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVA---ELKRKKPRGVVISPGPGAPQE------S--GI 80 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~---~l~~~~~dgiil~GG~~~~~~------~--~~ 80 (203)
...+++||........+.+.++++- +..+++.+..-.. .+.+ .+.+...|+|++.+|+|+... . ..
T Consensus 241 G~d~I~id~a~g~~~~~~~~v~~i~-~~~p~~~Vi~g~v--~t~e~a~~l~~aGaD~I~vg~g~Gs~~~t~~~~g~g~p~ 317 (490)
T 4avf_A 241 GVDVVVVDTAHGHSKGVIERVRWVK-QTFPDVQVIGGNI--ATAEAAKALAEAGADAVKVGIGPGSICTTRIVAGVGVPQ 317 (490)
T ss_dssp TCSEEEEECSCCSBHHHHHHHHHHH-HHCTTSEEEEEEE--CSHHHHHHHHHTTCSEEEECSSCSTTCHHHHHTCBCCCH
T ss_pred ccceEEecccCCcchhHHHHHHHHH-HHCCCceEEEeee--CcHHHHHHHHHcCCCEEEECCCCCcCCCccccCCCCccH
Confidence 4567777755444433333333331 1112444433111 2232 334457899999777776421 1 11
Q ss_pred ---HHHHHHHh-CCCCcee-ehhHH----H-HHHHhCCeeccc
Q 037843 81 ---SFRTVLEL-GPTMPLF-CMGLK----C-IGEALEGRLYVL 113 (203)
Q Consensus 81 ---~~~~i~~~-~~~~Pil-ClG~Q----l-la~a~gg~v~~~ 113 (203)
+.+..+.+ ..++||+ ..|.. + -+.++|+.....
T Consensus 318 ~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kal~~GAd~V~v 360 (490)
T 4avf_A 318 ISAIANVAAALEGTGVPLIADGGIRFSGDLAKAMVAGAYCVMM 360 (490)
T ss_dssp HHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHhccCCCcEEEeCCCCCHHHHHHHHHcCCCeeee
Confidence 12222223 3479999 55542 2 244567665443
No 434
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=20.30 E-value=46 Score=26.40 Aligned_cols=51 Identities=16% Similarity=0.254 Sum_probs=28.6
Q ss_pred CCcEEEEeCCchHHHHHHHHHH-HhhhhhcCCceEEEEeCCcccHHHHhccCCCEEEE
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMG-ELELELSQGYHFEVYRNDELTVAELKRKKPRGVVI 68 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~-~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~dgiil 68 (203)
+.+|+|||-.......+.+.|+ .. |..+..........+.+....+|.||+
T Consensus 18 ~~~ilivdD~~~~~~~l~~~l~~~~------~~~v~~~~~~~~al~~~~~~~~dlvl~ 69 (358)
T 3bre_A 18 AVMVLLVDDQAMIGEAVRRSLASEA------GIDFHFCSDPQQAVAVANQIKPTVILQ 69 (358)
T ss_dssp CEEEEEECSCTTHHHHHHTTSSSCT------TEEEEEECCHHHHHHHHHHHCCSEEEE
T ss_pred CceEEEEECCHHHHHHHHHHHHhcc------CcEEEEeCCHHHHHHHHHhCCCCEEEE
Confidence 4579999887766666666664 23 666543321111122222336888887
No 435
>2ftc_D Mitochondrial ribosomal protein L4 isoform A, mitochondrial 39S ribosomal protein L3; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_D
Probab=20.12 E-value=1.3e+02 Score=22.01 Aligned_cols=9 Identities=11% Similarity=0.276 Sum_probs=4.0
Q ss_pred HHHHHHHHh
Q 037843 27 NLCQYMGEL 35 (203)
Q Consensus 27 ~l~~~l~~~ 35 (203)
++..+++.+
T Consensus 133 ~~~~a~RNi 141 (175)
T 2ftc_D 133 SIVEATSRL 141 (175)
T ss_pred HHHHHHhCC
Confidence 344444444
No 436
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}
Probab=20.10 E-value=3.1e+02 Score=21.82 Aligned_cols=53 Identities=11% Similarity=0.088 Sum_probs=36.3
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCCcccHH--HHhccCCCEEEECCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRNDELTVA--ELKRKKPRGVVISPG 71 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~~~~~~--~l~~~~~dgiil~GG 71 (203)
..+++||-.+...-..+...|... |+.+++.+....+.+ +... +.|.||-+=|
T Consensus 165 Gk~vvVIG~s~iVG~p~A~lL~~~------gAtVtv~~~~T~~l~l~~~~~-~ADIVI~Avg 219 (300)
T 4a26_A 165 GKRAVVLGRSNIVGAPVAALLMKE------NATVTIVHSGTSTEDMIDYLR-TADIVIAAMG 219 (300)
T ss_dssp TCEEEEECCCTTTHHHHHHHHHHT------TCEEEEECTTSCHHHHHHHHH-TCSEEEECSC
T ss_pred CCEEEEECCCchHHHHHHHHHHHC------CCeEEEEeCCCCCchhhhhhc-cCCEEEECCC
Confidence 578999976554566788888888 999988865434444 4333 5788887544
No 437
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=20.06 E-value=1.5e+02 Score=23.59 Aligned_cols=33 Identities=6% Similarity=0.110 Sum_probs=24.4
Q ss_pred CCcEEEEeCCchHHHHHHHHHHHhhhhhcCCceEEEEeCC
Q 037843 12 KNPIVVIDNYDSFTYNLCQYMGELELELSQGYHFEVYRND 51 (203)
Q Consensus 12 ~~~i~iid~~~~~~~~l~~~l~~~~~~~~~g~~~~v~~~~ 51 (203)
|++|+||..+ .....+..+++++ |+++.++..+
T Consensus 1 MK~I~ilGgg-~~g~~~~~~Ak~~------G~~vv~vd~~ 33 (363)
T 4ffl_A 1 MKTICLVGGK-LQGFEAAYLSKKA------GMKVVLVDKN 33 (363)
T ss_dssp CCEEEEECCS-HHHHHHHHHHHHT------TCEEEEEESC
T ss_pred CCEEEEECCC-HHHHHHHHHHHHC------CCEEEEEeCC
Confidence 6789999754 3345677788888 9999887643
Done!