BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037844
         (126 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
           Ectodomain
 pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
           Brassinolide
          Length = 772

 Score = 28.1 bits (61), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 38/96 (39%), Gaps = 2/96 (2%)

Query: 33  LFKLIHLKWLILLFNKFSG--FEILIKIIXXXXXXXXXXXXXXXXXXXPVSTKYLRSLKV 90
           L K+  LK L L FN+FSG   E L  +                     +      +L+ 
Sbjct: 336 LLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQE 395

Query: 91  LAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRGRI 126
           L +    F  +I   L N ++L+ LHLS N   G I
Sbjct: 396 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI 431


>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
 pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
          Length = 768

 Score = 27.7 bits (60), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 38/96 (39%), Gaps = 2/96 (2%)

Query: 33  LFKLIHLKWLILLFNKFSG--FEILIKIIXXXXXXXXXXXXXXXXXXXPVSTKYLRSLKV 90
           L K+  LK L L FN+FSG   E L  +                     +      +L+ 
Sbjct: 339 LLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQE 398

Query: 91  LAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRGRI 126
           L +    F  +I   L N ++L+ LHLS N   G I
Sbjct: 399 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI 434


>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
 pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
 pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
 pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
          Length = 477

 Score = 26.6 bits (57), Expect = 4.0,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 3/42 (7%)

Query: 85  LRSLKVLAIIKCNFCSRITFLLRNLTQLIIL---HLSQNSFR 123
           L SL+ L + KCN  S  T  L +L  LI+L   HL+ N+ R
Sbjct: 151 LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIR 192


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.329    0.142    0.410 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,614,665
Number of Sequences: 62578
Number of extensions: 66095
Number of successful extensions: 144
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 141
Number of HSP's gapped (non-prelim): 5
length of query: 126
length of database: 14,973,337
effective HSP length: 87
effective length of query: 39
effective length of database: 9,529,051
effective search space: 371632989
effective search space used: 371632989
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 45 (21.9 bits)