Query 037844
Match_columns 126
No_of_seqs 117 out of 2462
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 04:55:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037844.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037844hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.7 3.1E-16 6.7E-21 119.6 8.4 113 11-126 475-587 (968)
2 PLN00113 leucine-rich repeat r 99.6 1.3E-15 2.9E-20 116.2 8.0 111 11-124 140-250 (968)
3 PLN03150 hypothetical protein; 99.6 1.4E-14 3E-19 106.3 9.5 116 3-121 406-526 (623)
4 KOG0617 Ras suppressor protein 99.5 4E-16 8.6E-21 96.6 -4.0 107 9-121 31-138 (264)
5 KOG4194 Membrane glycoprotein 99.4 2.8E-14 6.1E-19 101.9 -0.4 114 10-126 268-381 (873)
6 PLN03150 hypothetical protein; 99.4 1.1E-12 2.5E-17 96.3 7.3 87 39-126 420-506 (623)
7 KOG0617 Ras suppressor protein 99.4 2.3E-14 5E-19 88.8 -2.3 107 9-121 54-161 (264)
8 PF14580 LRR_9: Leucine-rich r 99.3 2.4E-12 5.2E-17 80.6 3.9 104 12-123 20-126 (175)
9 KOG0472 Leucine-rich repeat pr 99.3 5.5E-13 1.2E-17 91.8 1.1 109 9-123 433-541 (565)
10 PF14580 LRR_9: Leucine-rich r 99.2 4E-11 8.6E-16 75.2 6.0 102 10-117 41-147 (175)
11 PF13855 LRR_8: Leucine rich r 99.2 3.3E-11 7.2E-16 63.0 3.1 60 63-122 2-61 (61)
12 KOG0618 Serine/threonine phosp 99.1 9.9E-12 2.1E-16 92.6 0.8 107 9-121 381-487 (1081)
13 KOG4194 Membrane glycoprotein 99.1 3.7E-11 8E-16 86.4 3.2 109 11-123 125-234 (873)
14 PF13855 LRR_8: Leucine rich r 99.1 2.3E-10 4.9E-15 59.8 4.2 60 11-73 1-60 (61)
15 KOG0444 Cytoskeletal regulator 99.1 4.9E-12 1.1E-16 91.8 -3.1 104 12-120 269-372 (1255)
16 KOG0444 Cytoskeletal regulator 99.1 4.5E-12 9.8E-17 91.9 -3.3 106 11-122 245-351 (1255)
17 KOG0472 Leucine-rich repeat pr 99.1 3.5E-12 7.5E-17 88.0 -4.3 105 12-124 184-289 (565)
18 cd00116 LRR_RI Leucine-rich re 98.9 7.2E-10 1.6E-14 75.2 3.7 15 109-123 220-234 (319)
19 KOG1259 Nischarin, modulator o 98.9 1.5E-10 3.2E-15 77.7 0.1 109 9-125 282-414 (490)
20 PRK15387 E3 ubiquitin-protein 98.9 2.1E-09 4.6E-14 80.5 6.2 58 63-125 403-460 (788)
21 KOG1259 Nischarin, modulator o 98.9 1.3E-10 2.9E-15 77.9 -0.5 88 9-100 305-413 (490)
22 KOG4237 Extracellular matrix p 98.9 1.2E-10 2.6E-15 80.2 -1.3 109 11-122 67-176 (498)
23 KOG0618 Serine/threonine phosp 98.9 5.8E-11 1.3E-15 88.6 -3.1 107 11-123 359-465 (1081)
24 cd00116 LRR_RI Leucine-rich re 98.9 1.9E-09 4.1E-14 73.2 4.0 113 10-124 80-207 (319)
25 PLN03210 Resistant to P. syrin 98.8 4.5E-08 9.8E-13 76.8 8.4 103 12-120 612-714 (1153)
26 PRK15370 E3 ubiquitin-protein 98.8 2.8E-08 6E-13 74.7 6.9 98 11-123 199-296 (754)
27 PLN03210 Resistant to P. syrin 98.7 1E-07 2.2E-12 74.9 9.2 104 11-121 589-692 (1153)
28 PRK15370 E3 ubiquitin-protein 98.7 2.7E-08 5.9E-13 74.7 5.1 99 12-123 263-380 (754)
29 KOG4658 Apoptotic ATPase [Sign 98.6 1.9E-08 4.2E-13 76.6 3.2 106 11-120 545-652 (889)
30 KOG4237 Extracellular matrix p 98.6 1.5E-08 3.2E-13 70.2 1.7 91 5-98 268-358 (498)
31 KOG0532 Leucine-rich repeat (L 98.6 8.6E-09 1.9E-13 74.1 0.4 104 13-124 145-248 (722)
32 KOG0532 Leucine-rich repeat (L 98.6 2.3E-09 4.9E-14 77.0 -2.8 104 11-123 121-224 (722)
33 PF12799 LRR_4: Leucine Rich r 98.5 1.3E-07 2.9E-12 46.0 3.5 35 88-123 3-37 (44)
34 COG4886 Leucine-rich repeat (L 98.5 6.3E-08 1.4E-12 67.9 3.1 103 11-120 116-219 (394)
35 KOG1859 Leucine-rich repeat pr 98.5 5.3E-09 1.2E-13 77.2 -3.0 106 10-124 163-268 (1096)
36 KOG4579 Leucine-rich repeat (L 98.4 1.4E-08 3.1E-13 61.0 -2.1 77 38-118 54-131 (177)
37 PRK15387 E3 ubiquitin-protein 98.4 2.9E-07 6.3E-12 69.4 4.1 85 12-108 383-467 (788)
38 COG4886 Leucine-rich repeat (L 98.4 1.1E-07 2.3E-12 66.7 1.5 105 12-123 141-268 (394)
39 KOG3207 Beta-tubulin folding c 98.4 8.7E-08 1.9E-12 67.0 0.3 87 10-98 171-258 (505)
40 KOG4658 Apoptotic ATPase [Sign 98.3 4.7E-07 1E-11 69.3 3.6 107 7-117 567-675 (889)
41 PF12799 LRR_4: Leucine Rich r 98.3 1.5E-06 3.3E-11 42.2 4.1 34 39-74 3-36 (44)
42 KOG4579 Leucine-rich repeat (L 98.3 1.5E-08 3.2E-13 61.0 -3.9 107 11-124 53-160 (177)
43 KOG1644 U2-associated snRNP A' 98.3 2.2E-06 4.7E-11 54.7 4.7 101 13-118 44-148 (233)
44 KOG1859 Leucine-rich repeat pr 98.2 2.3E-08 5E-13 73.9 -5.7 104 11-123 187-292 (1096)
45 KOG0531 Protein phosphatase 1, 98.2 7.1E-07 1.5E-11 63.2 1.5 103 11-122 95-198 (414)
46 KOG1644 U2-associated snRNP A' 98.1 6.7E-06 1.5E-10 52.5 4.8 102 14-123 22-126 (233)
47 KOG0531 Protein phosphatase 1, 98.1 5.6E-07 1.2E-11 63.7 0.0 105 11-124 72-176 (414)
48 KOG1909 Ran GTPase-activating 97.9 4.1E-06 9E-11 57.3 1.6 111 11-123 92-226 (382)
49 KOG2982 Uncharacterized conser 97.9 1.1E-05 2.3E-10 54.7 2.7 64 8-74 94-158 (418)
50 KOG3207 Beta-tubulin folding c 97.9 3.4E-06 7.3E-11 59.3 0.1 110 10-122 196-313 (505)
51 KOG1909 Ran GTPase-activating 97.8 4.3E-06 9.4E-11 57.2 0.5 112 11-122 185-310 (382)
52 KOG3665 ZYG-1-like serine/thre 97.8 1.3E-05 2.8E-10 60.2 2.3 86 35-123 171-263 (699)
53 KOG2123 Uncharacterized conser 97.7 9.1E-07 2E-11 59.2 -3.8 100 10-116 18-123 (388)
54 KOG2739 Leucine-rich acidic nu 97.7 3.3E-05 7.1E-10 51.0 2.4 102 9-117 41-150 (260)
55 KOG3665 ZYG-1-like serine/thre 97.6 2.7E-05 5.8E-10 58.6 2.0 107 11-121 122-231 (699)
56 KOG2739 Leucine-rich acidic nu 97.4 0.0001 2.2E-09 48.7 2.3 88 34-124 40-130 (260)
57 KOG2123 Uncharacterized conser 97.4 1.1E-05 2.3E-10 54.2 -2.3 81 8-92 38-123 (388)
58 KOG0473 Leucine-rich repeat pr 96.8 2.9E-05 6.3E-10 51.0 -4.7 86 8-99 39-124 (326)
59 PRK15386 type III secretion pr 96.7 0.0045 9.7E-08 44.1 5.3 31 87-120 157-187 (426)
60 KOG2982 Uncharacterized conser 96.7 0.00093 2E-08 45.6 1.8 84 37-121 71-157 (418)
61 COG5238 RNA1 Ran GTPase-activa 96.7 0.0067 1.5E-07 41.1 5.4 111 10-123 91-227 (388)
62 PRK15386 type III secretion pr 96.7 0.0089 1.9E-07 42.7 6.3 96 11-122 52-168 (426)
63 KOG2120 SCF ubiquitin ligase, 96.5 0.00051 1.1E-08 46.9 -0.6 40 9-49 232-272 (419)
64 PF00560 LRR_1: Leucine Rich R 96.4 0.002 4.3E-08 26.2 1.3 10 40-49 3-12 (22)
65 COG5238 RNA1 Ran GTPase-activa 96.3 0.0071 1.5E-07 41.0 3.9 114 10-123 29-170 (388)
66 PF13306 LRR_5: Leucine rich r 96.0 0.066 1.4E-06 31.4 6.7 105 7-119 8-112 (129)
67 KOG2120 SCF ubiquitin ligase, 95.7 0.0018 3.8E-08 44.3 -1.1 58 39-96 187-244 (419)
68 PF13306 LRR_5: Leucine rich r 95.4 0.069 1.5E-06 31.3 5.3 96 9-112 33-128 (129)
69 PF13504 LRR_7: Leucine rich r 95.4 0.013 2.7E-07 22.3 1.3 11 88-98 3-13 (17)
70 KOG3864 Uncharacterized conser 95.0 0.0039 8.5E-08 40.1 -1.1 80 39-119 103-185 (221)
71 PF13516 LRR_6: Leucine Rich r 93.8 0.025 5.4E-07 23.3 0.5 15 87-101 3-17 (24)
72 KOG3864 Uncharacterized conser 93.6 0.014 3E-07 37.7 -0.7 84 12-97 102-187 (221)
73 smart00370 LRR Leucine-rich re 93.2 0.11 2.3E-06 21.7 2.0 14 86-99 2-15 (26)
74 smart00369 LRR_TYP Leucine-ric 93.2 0.11 2.3E-06 21.7 2.0 14 86-99 2-15 (26)
75 smart00365 LRR_SD22 Leucine-ri 91.1 0.24 5.2E-06 21.0 1.8 14 110-123 2-15 (26)
76 KOG1947 Leucine rich repeat pr 90.7 0.084 1.8E-06 37.8 0.3 13 85-97 268-280 (482)
77 KOG1947 Leucine rich repeat pr 89.4 0.28 6.1E-06 35.2 2.1 108 9-117 212-328 (482)
78 smart00368 LRR_RI Leucine rich 88.1 0.37 8E-06 20.6 1.3 14 110-123 2-15 (28)
79 KOG0473 Leucine-rich repeat pr 86.3 0.0077 1.7E-07 39.9 -6.6 85 34-122 39-123 (326)
80 smart00364 LRR_BAC Leucine-ric 85.8 0.58 1.3E-05 19.8 1.2 14 11-24 2-15 (26)
81 KOG4341 F-box protein containi 70.8 5.6 0.00012 29.0 3.0 108 11-120 320-436 (483)
82 KOG3763 mRNA export factor TAP 68.7 3.1 6.7E-05 31.2 1.4 64 10-76 217-284 (585)
83 KOG3763 mRNA export factor TAP 65.3 3.5 7.6E-05 30.9 1.1 64 37-100 218-284 (585)
84 smart00367 LRR_CC Leucine-rich 62.8 6.2 0.00013 16.2 1.3 16 109-124 1-17 (26)
85 KOG4308 LRR-containing protein 50.9 0.84 1.8E-05 33.6 -3.9 114 11-124 172-304 (478)
86 TIGR00864 PCC polycystin catio 48.2 15 0.00032 33.1 2.2 32 43-75 1-32 (2740)
87 TIGR00864 PCC polycystin catio 45.4 14 0.0003 33.3 1.6 32 17-50 1-32 (2740)
88 smart00446 LRRcap occurring C- 36.6 23 0.0005 14.9 0.9 15 105-119 8-22 (26)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.66 E-value=3.1e-16 Score=119.62 Aligned_cols=113 Identities=27% Similarity=0.350 Sum_probs=98.5
Q ss_pred CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcE
Q 037844 11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKV 90 (126)
Q Consensus 11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~ 90 (126)
++++.|++++|++.+.. |..+..+++|+.|++++|.+.+ .+|..+..+++|+.+++++|.+++..|..+..+++|+.
T Consensus 475 ~~L~~L~ls~n~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 551 (968)
T PLN00113 475 KRLENLDLSRNQFSGAV--PRKLGSLSELMQLKLSENKLSG-EIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQ 551 (968)
T ss_pred ccceEEECcCCccCCcc--ChhhhhhhccCEEECcCCccee-eCChHHcCccCCCEEECCCCcccccCChhHhCcccCCE
Confidence 46788888888888777 7778888889999999999884 68888888999999999999998888888889999999
Q ss_pred EEeecCccCccchHHHhcCCCCcEEEccCCcCeecC
Q 037844 91 LAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRGRI 126 (126)
Q Consensus 91 l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~~~ 126 (126)
|++++|++.+.+|..+..+++|+.+++++|+++|.+
T Consensus 552 L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~ 587 (968)
T PLN00113 552 LDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSL 587 (968)
T ss_pred EECCCCcccccCChhHhcCcccCEEeccCCcceeeC
Confidence 999999999899999999999999999999988754
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.62 E-value=1.3e-15 Score=116.18 Aligned_cols=111 Identities=29% Similarity=0.351 Sum_probs=58.1
Q ss_pred CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcE
Q 037844 11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKV 90 (126)
Q Consensus 11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~ 90 (126)
+++++|++++|.+.+.. |..+..+++|++|++++|.+.+ ..|..++.+++|++|++++|.+.+..|..++.+++|+.
T Consensus 140 ~~L~~L~Ls~n~~~~~~--p~~~~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 216 (968)
T PLN00113 140 PNLETLDLSNNMLSGEI--PNDIGSFSSLKVLDLGGNVLVG-KIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKW 216 (968)
T ss_pred CCCCEEECcCCcccccC--ChHHhcCCCCCEEECccCcccc-cCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccE
Confidence 34455555555544444 4455555555555555555542 44555555555555555555555445555555555555
Q ss_pred EEeecCccCccchHHHhcCCCCcEEEccCCcCee
Q 037844 91 LAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRG 124 (126)
Q Consensus 91 l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~ 124 (126)
|++++|.+.+.+|..++.+++|++|++++|.++|
T Consensus 217 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 250 (968)
T PLN00113 217 IYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTG 250 (968)
T ss_pred EECcCCccCCcCChhHhcCCCCCEEECcCceecc
Confidence 5555555555555555555555555555554443
No 3
>PLN03150 hypothetical protein; Provisional
Probab=99.58 E-value=1.4e-14 Score=106.32 Aligned_cols=116 Identities=23% Similarity=0.298 Sum_probs=102.2
Q ss_pred CccccCC----CCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcC
Q 037844 3 DQAEKKQ----RNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGL 78 (126)
Q Consensus 3 ~~~~~~~----~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~ 78 (126)
|+.|... ...++.|++++|.+.+.+ |..+..+++|+.|++++|.+.| .+|..++.+++|+.|++++|.+.+..
T Consensus 406 Gv~C~~~~~~~~~~v~~L~L~~n~L~g~i--p~~i~~L~~L~~L~Ls~N~l~g-~iP~~~~~l~~L~~LdLs~N~lsg~i 482 (623)
T PLN03150 406 GADCQFDSTKGKWFIDGLGLDNQGLRGFI--PNDISKLRHLQSINLSGNSIRG-NIPPSLGSITSLEVLDLSYNSFNGSI 482 (623)
T ss_pred cceeeccCCCCceEEEEEECCCCCccccC--CHHHhCCCCCCEEECCCCcccC-cCChHHhCCCCCCEEECCCCCCCCCC
Confidence 6777421 125899999999999988 8899999999999999999985 78988999999999999999999999
Q ss_pred CccccCCCCCcEEEeecCccCccchHHHhcC-CCCcEEEccCCc
Q 037844 79 PVSTKYLRSLKVLAIIKCNFCSRITFLLRNL-TQLIILHLSQNS 121 (126)
Q Consensus 79 ~~~~~~l~~L~~l~l~~n~~~~~~p~~l~~~-~~L~~l~l~~n~ 121 (126)
|..++.+++|+.|++++|.+.+.+|..+... .++..+++.+|.
T Consensus 483 P~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred chHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence 9999999999999999999999999988764 467788888875
No 4
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.49 E-value=4e-16 Score=96.58 Aligned_cols=107 Identities=24% Similarity=0.273 Sum_probs=82.5
Q ss_pred CCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCC
Q 037844 9 QRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSL 88 (126)
Q Consensus 9 ~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L 88 (126)
..++++.|.+|+|.++ .. |+.+..+.+|+.|.+.+|+++ .+|..+..+++|+.++++.|++. ..|..|+.+|.|
T Consensus 31 ~~s~ITrLtLSHNKl~-~v--ppnia~l~nlevln~~nnqie--~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~l 104 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VV--PPNIAELKNLEVLNLSNNQIE--ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPAL 104 (264)
T ss_pred chhhhhhhhcccCcee-ec--CCcHHHhhhhhhhhcccchhh--hcChhhhhchhhhheecchhhhh-cCccccCCCchh
Confidence 3477888999999988 55 677888899999999999987 68888889999999999988886 678889999999
Q ss_pred cEEEeecCccCc-cchHHHhcCCCCcEEEccCCc
Q 037844 89 KVLAIIKCNFCS-RITFLLRNLTQLIILHLSQNS 121 (126)
Q Consensus 89 ~~l~l~~n~~~~-~~p~~l~~~~~L~~l~l~~n~ 121 (126)
+.|++..|.+.. .+|..|..+..|+.+++++|.
T Consensus 105 evldltynnl~e~~lpgnff~m~tlralyl~dnd 138 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND 138 (264)
T ss_pred hhhhccccccccccCCcchhHHHHHHHHHhcCCC
Confidence 999888887753 344444444445555555443
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.40 E-value=2.8e-14 Score=101.92 Aligned_cols=114 Identities=21% Similarity=0.116 Sum_probs=90.6
Q ss_pred CCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCc
Q 037844 10 RNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLK 89 (126)
Q Consensus 10 ~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~ 89 (126)
...++.|++++|++...- ...+..+..|+.|++++|.+. ..-++.|..+++|.+|+++.|+++...+.+|..+..|+
T Consensus 268 l~kme~l~L~~N~l~~vn--~g~lfgLt~L~~L~lS~NaI~-rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le 344 (873)
T KOG4194|consen 268 LEKMEHLNLETNRLQAVN--EGWLFGLTSLEQLDLSYNAIQ-RIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLE 344 (873)
T ss_pred ecccceeecccchhhhhh--cccccccchhhhhccchhhhh-eeecchhhhcccceeEeccccccccCChhHHHHHHHhh
Confidence 357888999999888544 566778888999999999987 35567788889999999999999866667777888888
Q ss_pred EEEeecCccCccchHHHhcCCCCcEEEccCCcCeecC
Q 037844 90 VLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRGRI 126 (126)
Q Consensus 90 ~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~~~ 126 (126)
.|+|+.|+++..-...|..+++|+.||++.|.++|.|
T Consensus 345 ~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~I 381 (873)
T KOG4194|consen 345 ELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCI 381 (873)
T ss_pred hhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEE
Confidence 8888888887544556777788888888888888764
No 6
>PLN03150 hypothetical protein; Provisional
Probab=99.39 E-value=1.1e-12 Score=96.34 Aligned_cols=87 Identities=34% Similarity=0.376 Sum_probs=82.0
Q ss_pred CceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcEEEeecCccCccchHHHhcCCCCcEEEcc
Q 037844 39 LKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKVLAIIKCNFCSRITFLLRNLTQLIILHLS 118 (126)
Q Consensus 39 L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~ 118 (126)
++.|++++|.+.| .+|..++.+++|+.|++++|.+.+.+|..++.+++|+.|++++|.+.+.+|+.++.+++|+.|+++
T Consensus 420 v~~L~L~~n~L~g-~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRG-FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccc-cCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 6789999999985 789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCeecC
Q 037844 119 QNSFRGRI 126 (126)
Q Consensus 119 ~n~i~~~~ 126 (126)
+|.++|.+
T Consensus 499 ~N~l~g~i 506 (623)
T PLN03150 499 GNSLSGRV 506 (623)
T ss_pred CCcccccC
Confidence 99999864
No 7
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.37 E-value=2.3e-14 Score=88.84 Aligned_cols=107 Identities=22% Similarity=0.322 Sum_probs=82.4
Q ss_pred CCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCc-CcCCccccCCCC
Q 037844 9 QRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLS-GGLPVSTKYLRS 87 (126)
Q Consensus 9 ~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~-~~~~~~~~~l~~ 87 (126)
...+++.|++.+|++. ++ |..++.++.|+.|.+..|++. ..|..|+.++-|+.+|+.+|.+. ..+|+.|..|..
T Consensus 54 ~l~nlevln~~nnqie-~l--p~~issl~klr~lnvgmnrl~--~lprgfgs~p~levldltynnl~e~~lpgnff~m~t 128 (264)
T KOG0617|consen 54 ELKNLEVLNLSNNQIE-EL--PTSISSLPKLRILNVGMNRLN--ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTT 128 (264)
T ss_pred Hhhhhhhhhcccchhh-hc--Chhhhhchhhhheecchhhhh--cCccccCCCchhhhhhccccccccccCCcchhHHHH
Confidence 3457888999999988 67 888999999999999999987 78999999999999999988876 345666666666
Q ss_pred CcEEEeecCccCccchHHHhcCCCCcEEEccCCc
Q 037844 88 LKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNS 121 (126)
Q Consensus 88 L~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~ 121 (126)
|+.|.++.|-+. .+|..++.+++|+.+.+..|.
T Consensus 129 lralyl~dndfe-~lp~dvg~lt~lqil~lrdnd 161 (264)
T KOG0617|consen 129 LRALYLGDNDFE-ILPPDVGKLTNLQILSLRDND 161 (264)
T ss_pred HHHHHhcCCCcc-cCChhhhhhcceeEEeeccCc
Confidence 666666666666 556666666666666666553
No 8
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.30 E-value=2.4e-12 Score=80.61 Aligned_cols=104 Identities=24% Similarity=0.235 Sum_probs=28.1
Q ss_pred ceEEEEcCCCCcccccCCCcccc-ccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccc-cCCCCCc
Q 037844 12 HVIKLDLPSSCLQDSINSSSGLF-KLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVST-KYLRSLK 89 (126)
Q Consensus 12 ~l~~L~ls~n~l~~~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~-~~l~~L~ 89 (126)
++++|++++|.++ .+ ..++ .+.+|+.|++++|.++ .+ +.+..++.|+.|++++|+++.. .+.+ ..++.|+
T Consensus 20 ~~~~L~L~~n~I~-~I---e~L~~~l~~L~~L~Ls~N~I~--~l-~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~ 91 (175)
T PF14580_consen 20 KLRELNLRGNQIS-TI---ENLGATLDKLEVLDLSNNQIT--KL-EGLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQ 91 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S-----TT----TT--EEE--SS---S--CHHHHHH-TT--
T ss_pred ccccccccccccc-cc---cchhhhhcCCCEEECCCCCCc--cc-cCccChhhhhhcccCCCCCCcc-ccchHHhCCcCC
Confidence 3456666666655 22 1233 3455666666666665 23 2355566666666666666532 2222 2456666
Q ss_pred EEEeecCccCc-cchHHHhcCCCCcEEEccCCcCe
Q 037844 90 VLAIIKCNFCS-RITFLLRNLTQLIILHLSQNSFR 123 (126)
Q Consensus 90 ~l~l~~n~~~~-~~p~~l~~~~~L~~l~l~~n~i~ 123 (126)
.|++++|++.. ..-..++.+++|+.|++.+|+++
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 66666666542 11234455666666666666654
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.30 E-value=5.5e-13 Score=91.80 Aligned_cols=109 Identities=28% Similarity=0.347 Sum_probs=91.3
Q ss_pred CCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCC
Q 037844 9 QRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSL 88 (126)
Q Consensus 9 ~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L 88 (126)
..++++-|++++|-+. .+ |-+++.+..|+.++++.|+|. ..|..+..+..++.+-.+.|++....+..++.|..|
T Consensus 433 ~l~kLt~L~L~NN~Ln-~L--P~e~~~lv~Lq~LnlS~NrFr--~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL 507 (565)
T KOG0472|consen 433 QLQKLTFLDLSNNLLN-DL--PEEMGSLVRLQTLNLSFNRFR--MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNL 507 (565)
T ss_pred hhhcceeeecccchhh-hc--chhhhhhhhhheecccccccc--cchHHHhhHHHHHHHHhccccccccChHHhhhhhhc
Confidence 4567888888888777 55 778888888888999988886 677776666667777667788876666668899999
Q ss_pred cEEEeecCccCccchHHHhcCCCCcEEEccCCcCe
Q 037844 89 KVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFR 123 (126)
Q Consensus 89 ~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~ 123 (126)
..||+.+|.+. .+|+.+++|.+|+++++.+|+|+
T Consensus 508 ~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 508 TTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 99999999999 88999999999999999999986
No 10
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.21 E-value=4e-11 Score=75.16 Aligned_cols=102 Identities=27% Similarity=0.281 Sum_probs=51.5
Q ss_pred CCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhh-hCCCCCCEEEcccCcCcCcC-CccccCCCC
Q 037844 10 RNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKI-INLSRLSYLNLFYSSLSGGL-PVSTKYLRS 87 (126)
Q Consensus 10 ~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~l~~L~~l~l~~~~~~~~~-~~~~~~l~~ 87 (126)
..+++.|++++|.++ .+ ..+..++.|+.|++++|.++ .+.+.+ ..+++|+.+++++|++...- ...+..+++
T Consensus 41 l~~L~~L~Ls~N~I~-~l---~~l~~L~~L~~L~L~~N~I~--~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~ 114 (175)
T PF14580_consen 41 LDKLEVLDLSNNQIT-KL---EGLPGLPRLKTLDLSNNRIS--SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPK 114 (175)
T ss_dssp -TT--EEE-TTS--S------TT----TT--EEE--SS-----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT
T ss_pred hcCCCEEECCCCCCc-cc---cCccChhhhhhcccCCCCCC--ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCC
Confidence 468999999999999 44 35788999999999999998 354444 36899999999999997421 244678899
Q ss_pred CcEEEeecCccCccc---hHHHhcCCCCcEEEc
Q 037844 88 LKVLAIIKCNFCSRI---TFLLRNLTQLIILHL 117 (126)
Q Consensus 88 L~~l~l~~n~~~~~~---p~~l~~~~~L~~l~l 117 (126)
|+.|++.+|+++..- ...+..+|+|+.||-
T Consensus 115 L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 115 LRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp --EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred cceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 999999999998432 135778899999984
No 11
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.15 E-value=3.3e-11 Score=63.02 Aligned_cols=60 Identities=30% Similarity=0.279 Sum_probs=33.2
Q ss_pred CCCEEEcccCcCcCcCCccccCCCCCcEEEeecCccCccchHHHhcCCCCcEEEccCCcC
Q 037844 63 RLSYLNLFYSSLSGGLPVSTKYLRSLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSF 122 (126)
Q Consensus 63 ~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i 122 (126)
+|+.+++++|+++...+..|..+++|+++++++|.+....+..|..+++|+++++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 455555555555533334455555666666666666544444556666666666666653
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.14 E-value=9.9e-12 Score=92.57 Aligned_cols=107 Identities=30% Similarity=0.241 Sum_probs=88.7
Q ss_pred CCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCC
Q 037844 9 QRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSL 88 (126)
Q Consensus 9 ~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L 88 (126)
-..+|+.|+++||++. .+| ...+.++..|++|++++|+++ .+|..+..+..|+.+...+|++. .+| .+..++.|
T Consensus 381 ~~~hLKVLhLsyNrL~-~fp-as~~~kle~LeeL~LSGNkL~--~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL 454 (1081)
T KOG0618|consen 381 NFKHLKVLHLSYNRLN-SFP-ASKLRKLEELEELNLSGNKLT--TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQL 454 (1081)
T ss_pred cccceeeeeecccccc-cCC-HHHHhchHHhHHHhcccchhh--hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcc
Confidence 3478999999999988 453 355778899999999999998 78999999999999999999987 667 68899999
Q ss_pred cEEEeecCccCccchHHHhcCCCCcEEEccCCc
Q 037844 89 KVLAIIKCNFCSRITFLLRNLTQLIILHLSQNS 121 (126)
Q Consensus 89 ~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~ 121 (126)
+.+|++.|.++....+.....++|++||+++|.
T Consensus 455 ~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 455 KVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred eEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 999999999885443333333899999999986
No 13
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.13 E-value=3.7e-11 Score=86.37 Aligned_cols=109 Identities=26% Similarity=0.198 Sum_probs=76.5
Q ss_pred CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchh-hhhhCCCCCCEEEcccCcCcCcCCccccCCCCCc
Q 037844 11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEIL-IKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLK 89 (126)
Q Consensus 11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~ 89 (126)
++++.|++.+|.++..- ..++..++.|+.||++.|.++ .++ +.+..-.++.+|++++|+++..-.+.|..+.+|.
T Consensus 125 ghl~~L~L~~N~I~sv~--se~L~~l~alrslDLSrN~is--~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~ 200 (873)
T KOG4194|consen 125 GHLEKLDLRHNLISSVT--SEELSALPALRSLDLSRNLIS--EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLL 200 (873)
T ss_pred cceeEEeeecccccccc--HHHHHhHhhhhhhhhhhchhh--cccCCCCCCCCCceEEeeccccccccccccccccchhe
Confidence 56777777777776544 456666777777777777776 233 3344446678888888888766666677777888
Q ss_pred EEEeecCccCccchHHHhcCCCCcEEEccCCcCe
Q 037844 90 VLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFR 123 (126)
Q Consensus 90 ~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~ 123 (126)
.+.|+.|+++...+..|+++++|+.|++..|+|.
T Consensus 201 tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ir 234 (873)
T KOG4194|consen 201 TLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIR 234 (873)
T ss_pred eeecccCcccccCHHHhhhcchhhhhhcccccee
Confidence 8888888888444456667888888888887663
No 14
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.08 E-value=2.3e-10 Score=59.81 Aligned_cols=60 Identities=25% Similarity=0.219 Sum_probs=37.5
Q ss_pred CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCc
Q 037844 11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSS 73 (126)
Q Consensus 11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~ 73 (126)
+++++|++++|++.... +..+..+++|++|++++|.+. ...+..|..+++|+++++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~--~~~f~~l~~L~~L~l~~N~l~-~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIP--PDSFSNLPNLETLDLSNNNLT-SIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEEC--TTTTTTGTTESEEEETSSSES-EEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccC--HHHHcCCCCCCEeEccCCccC-ccCHHHHcCCCCCCEEeCcCCc
Confidence 35667777777666333 355666677777777777765 2344455666666666666664
No 15
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.07 E-value=4.9e-12 Score=91.77 Aligned_cols=104 Identities=21% Similarity=0.174 Sum_probs=49.6
Q ss_pred ceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcEE
Q 037844 12 HVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKVL 91 (126)
Q Consensus 12 ~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l 91 (126)
++++|++|.|+++ .+ |..+..++.|+.|++.+|++.=..+|+.++++..|+.+..++|.+. ..|.++..+..|+.|
T Consensus 269 ~lEtLNlSrNQLt-~L--P~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL 344 (1255)
T KOG0444|consen 269 NLETLNLSRNQLT-VL--PDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKL 344 (1255)
T ss_pred hhhhhccccchhc-cc--hHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHh
Confidence 3444444444444 33 4444444444444444444321124444444444444444444443 344555555555555
Q ss_pred EeecCccCccchHHHhcCCCCcEEEccCC
Q 037844 92 AIIKCNFCSRITFLLRNLTQLIILHLSQN 120 (126)
Q Consensus 92 ~l~~n~~~~~~p~~l~~~~~L~~l~l~~n 120 (126)
.|+.|.+. .+|+.+--++.|..||+..|
T Consensus 345 ~L~~NrLi-TLPeaIHlL~~l~vLDlreN 372 (1255)
T KOG0444|consen 345 KLDHNRLI-TLPEAIHLLPDLKVLDLREN 372 (1255)
T ss_pred ccccccee-echhhhhhcCCcceeeccCC
Confidence 55555555 45555555555555555554
No 16
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.07 E-value=4.5e-12 Score=91.95 Aligned_cols=106 Identities=19% Similarity=0.196 Sum_probs=85.9
Q ss_pred CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCc-CcCCccccCCCCCc
Q 037844 11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLS-GGLPVSTKYLRSLK 89 (126)
Q Consensus 11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~-~~~~~~~~~l~~L~ 89 (126)
.+++.|++|+|+++ ++ .-....+.+++.|+++.|+++ .+|..++++++|+.|.+.+|+++ .-+|..++++..|+
T Consensus 245 ~~LrrLNLS~N~it-eL--~~~~~~W~~lEtLNlSrNQLt--~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Le 319 (1255)
T KOG0444|consen 245 RNLRRLNLSGNKIT-EL--NMTEGEWENLETLNLSRNQLT--VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLE 319 (1255)
T ss_pred hhhheeccCcCcee-ee--eccHHHHhhhhhhccccchhc--cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhH
Confidence 56777777777777 44 334556677777888888877 68899999999999999999876 34678889999999
Q ss_pred EEEeecCccCccchHHHhcCCCCcEEEccCCcC
Q 037844 90 VLAIIKCNFCSRITFLLRNLTQLIILHLSQNSF 122 (126)
Q Consensus 90 ~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i 122 (126)
.+..++|.+. -+|+.+.++.+|+.|.+..|++
T Consensus 320 vf~aanN~LE-lVPEglcRC~kL~kL~L~~NrL 351 (1255)
T KOG0444|consen 320 VFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRL 351 (1255)
T ss_pred HHHhhccccc-cCchhhhhhHHHHHhcccccce
Confidence 9988888888 8899999999999999998875
No 17
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.05 E-value=3.5e-12 Score=87.96 Aligned_cols=105 Identities=26% Similarity=0.203 Sum_probs=61.8
Q ss_pred ceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCcccc-CCCCCcE
Q 037844 12 HVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTK-YLRSLKV 90 (126)
Q Consensus 12 ~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~-~l~~L~~ 90 (126)
+++.++..+|-+. .+ |+.++.|.+|.-||+..|.+. .+| .|..+..|..++++.|++. .+|..+. .++++.+
T Consensus 184 ~L~~ld~~~N~L~-tl--P~~lg~l~~L~~LyL~~Nki~--~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~v 256 (565)
T KOG0472|consen 184 RLKHLDCNSNLLE-TL--PPELGGLESLELLYLRRNKIR--FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLV 256 (565)
T ss_pred HHHhcccchhhhh-cC--ChhhcchhhhHHHHhhhcccc--cCC-CCCccHHHHHHHhcccHHH-hhHHHHhccccccee
Confidence 3444555555444 34 555555555555555555554 344 3555555555555555554 3444333 5667777
Q ss_pred EEeecCccCccchHHHhcCCCCcEEEccCCcCee
Q 037844 91 LAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRG 124 (126)
Q Consensus 91 l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~ 124 (126)
+|+..|+++ ++|..+.-+.+|.++|+++|.|++
T Consensus 257 LDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~ 289 (565)
T KOG0472|consen 257 LDLRDNKLK-EVPDEICLLRSLERLDLSNNDISS 289 (565)
T ss_pred eeccccccc-cCchHHHHhhhhhhhcccCCcccc
Confidence 777777777 667777777777777777777765
No 18
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.95 E-value=7.2e-10 Score=75.20 Aligned_cols=15 Identities=33% Similarity=0.572 Sum_probs=6.5
Q ss_pred CCCCcEEEccCCcCe
Q 037844 109 LTQLIILHLSQNSFR 123 (126)
Q Consensus 109 ~~~L~~l~l~~n~i~ 123 (126)
+++|++|++++|.++
T Consensus 220 ~~~L~~L~ls~n~l~ 234 (319)
T cd00116 220 LKSLEVLNLGDNNLT 234 (319)
T ss_pred cCCCCEEecCCCcCc
Confidence 344444444444433
No 19
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.94 E-value=1.5e-10 Score=77.71 Aligned_cols=109 Identities=23% Similarity=0.247 Sum_probs=72.2
Q ss_pred CCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCcc-------
Q 037844 9 QRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVS------- 81 (126)
Q Consensus 9 ~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~------- 81 (126)
.+..++++++|+|.++ .+ ..++.-.+.++.|+++.|.+. .+ ..+..+++|+.+|+++|.++ .+.++
T Consensus 282 TWq~LtelDLS~N~I~-~i--DESvKL~Pkir~L~lS~N~i~--~v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNI 354 (490)
T KOG1259|consen 282 TWQELTELDLSGNLIT-QI--DESVKLAPKLRRLILSQNRIR--TV-QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNI 354 (490)
T ss_pred hHhhhhhccccccchh-hh--hhhhhhccceeEEecccccee--ee-hhhhhcccceEeecccchhH-hhhhhHhhhcCE
Confidence 4456788888888777 44 456666678888888888876 33 33777788888888888765 22222
Q ss_pred ---------------ccCCCCCcEEEeecCccCccch--HHHhcCCCCcEEEccCCcCeec
Q 037844 82 ---------------TKYLRSLKVLAIIKCNFCSRIT--FLLRNLTQLIILHLSQNSFRGR 125 (126)
Q Consensus 82 ---------------~~~l~~L~~l~l~~n~~~~~~p--~~l~~~~~L~~l~l~~n~i~~~ 125 (126)
+.++-+|..||+.+|++. .+. ..++.+|+|+++.+.+|++++.
T Consensus 355 KtL~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie-~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 355 KTLKLAQNKIETLSGLRKLYSLVNLDLSSNQIE-ELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred eeeehhhhhHhhhhhhHhhhhheeccccccchh-hHHHhcccccccHHHHHhhcCCCcccc
Confidence 233445666666666665 222 2466778888888888888765
No 20
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.94 E-value=2.1e-09 Score=80.54 Aligned_cols=58 Identities=22% Similarity=0.277 Sum_probs=41.3
Q ss_pred CCCEEEcccCcCcCcCCccccCCCCCcEEEeecCccCccchHHHhcCCCCcEEEccCCcCeec
Q 037844 63 RLSYLNLFYSSLSGGLPVSTKYLRSLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRGR 125 (126)
Q Consensus 63 ~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~~ 125 (126)
+|+.+++++|+++ .+|.. ...|+.|++++|.++ .+|..+..+++|+.+++++|+++|.
T Consensus 403 ~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 403 ELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSER 460 (788)
T ss_pred CCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCch
Confidence 4455555555554 23321 235667778888887 7888899999999999999999875
No 21
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.92 E-value=1.3e-10 Score=77.93 Aligned_cols=88 Identities=19% Similarity=0.146 Sum_probs=65.0
Q ss_pred CCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCc--------------------chhhhhhCCCCCCEEE
Q 037844 9 QRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGF--------------------EILIKIINLSRLSYLN 68 (126)
Q Consensus 9 ~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~--------------------~~~~~~~~l~~L~~l~ 68 (126)
..+.++.|++|+|.+. .. ..+..+++|+.||+++|.++.- .....+.++.+|..+|
T Consensus 305 L~Pkir~L~lS~N~i~-~v---~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~LSGL~KLYSLvnLD 380 (490)
T KOG1259|consen 305 LAPKLRRLILSQNRIR-TV---QNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETLSGLRKLYSLVNLD 380 (490)
T ss_pred hccceeEEecccccee-ee---hhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhhhhhHhhhhheecc
Confidence 4478899999999888 33 3467788888899888865410 0122344567888999
Q ss_pred cccCcCcCcC-CccccCCCCCcEEEeecCccCc
Q 037844 69 LFYSSLSGGL-PVSTKYLRSLKVLAIIKCNFCS 100 (126)
Q Consensus 69 l~~~~~~~~~-~~~~~~l~~L~~l~l~~n~~~~ 100 (126)
+.+|++.... ...++.+|+|+++.+.+|++.+
T Consensus 381 l~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 381 LSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred ccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 9999987422 3568999999999999999984
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.90 E-value=1.2e-10 Score=80.19 Aligned_cols=109 Identities=21% Similarity=0.156 Sum_probs=89.8
Q ss_pred CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEccc-CcCcCcCCccccCCCCCc
Q 037844 11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFY-SSLSGGLPVSTKYLRSLK 89 (126)
Q Consensus 11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~-~~~~~~~~~~~~~l~~L~ 89 (126)
+..++++|..|+++..- +.+|..+++|+.|++++|.++ .+.|..|..++++..+.+-+ |++++..-..|+.+.+++
T Consensus 67 ~~tveirLdqN~I~~iP--~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slq 143 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIP--PGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQ 143 (498)
T ss_pred CcceEEEeccCCcccCC--hhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHH
Confidence 56788999999999544 688899999999999999998 57888898898887777765 888755445688899999
Q ss_pred EEEeecCccCccchHHHhcCCCCcEEEccCCcC
Q 037844 90 VLAIIKCNFCSRITFLLRNLTQLIILHLSQNSF 122 (126)
Q Consensus 90 ~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i 122 (126)
-|.++-|.+.-.....+..++++..|.+.+|.+
T Consensus 144 rLllNan~i~Cir~~al~dL~~l~lLslyDn~~ 176 (498)
T KOG4237|consen 144 RLLLNANHINCIRQDALRDLPSLSLLSLYDNKI 176 (498)
T ss_pred HHhcChhhhcchhHHHHHHhhhcchhcccchhh
Confidence 998988888866677888888888888888765
No 23
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.90 E-value=5.8e-11 Score=88.60 Aligned_cols=107 Identities=30% Similarity=0.303 Sum_probs=91.6
Q ss_pred CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcE
Q 037844 11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKV 90 (126)
Q Consensus 11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~ 90 (126)
+.|+.|++.+|.+++.. -+.+..+++|+.|+|++|++. ......+.+++.|+.|++++|.++ .+|..+..++.|++
T Consensus 359 ~~Lq~LylanN~Ltd~c--~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~t 434 (1081)
T KOG0618|consen 359 AALQELYLANNHLTDSC--FPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHT 434 (1081)
T ss_pred HHHHHHHHhcCcccccc--hhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHH
Confidence 56788899999999876 677888999999999999987 233455678899999999999997 67888888999999
Q ss_pred EEeecCccCccchHHHhcCCCCcEEEccCCcCe
Q 037844 91 LAIIKCNFCSRITFLLRNLTQLIILHLSQNSFR 123 (126)
Q Consensus 91 l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~ 123 (126)
|-..+|.+. .+| .+..++.|+.+|++.|.++
T Consensus 435 L~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~ 465 (1081)
T KOG0618|consen 435 LRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLS 465 (1081)
T ss_pred HhhcCCcee-ech-hhhhcCcceEEecccchhh
Confidence 989999988 778 7788999999999999876
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.89 E-value=1.9e-09 Score=73.18 Aligned_cols=113 Identities=23% Similarity=0.205 Sum_probs=72.4
Q ss_pred CCceEEEEcCCCCcccccCCCcccccccc---CceeEeccCcccCcc---hhhhhhCC-CCCCEEEcccCcCcCc----C
Q 037844 10 RNHVIKLDLPSSCLQDSINSSSGLFKLIH---LKWLILLFNKFSGFE---ILIKIINL-SRLSYLNLFYSSLSGG----L 78 (126)
Q Consensus 10 ~~~l~~L~ls~n~l~~~~~~~~~~~~l~~---L~~L~l~~n~~~~~~---~~~~~~~l-~~L~~l~l~~~~~~~~----~ 78 (126)
.++++.|++++|.+.... +..+..+.. |++|++++|.+.+.. +...+..+ ++|+.+++++|.+++. .
T Consensus 80 ~~~L~~L~l~~~~~~~~~--~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~ 157 (319)
T cd00116 80 GCGLQELDLSDNALGPDG--CGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEAL 157 (319)
T ss_pred cCceeEEEccCCCCChhH--HHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHH
Confidence 357888888888776443 344444444 888888888775211 12234455 7788888888887632 2
Q ss_pred CccccCCCCCcEEEeecCccCcc----chHHHhcCCCCcEEEccCCcCee
Q 037844 79 PVSTKYLRSLKVLAIIKCNFCSR----ITFLLRNLTQLIILHLSQNSFRG 124 (126)
Q Consensus 79 ~~~~~~l~~L~~l~l~~n~~~~~----~p~~l~~~~~L~~l~l~~n~i~~ 124 (126)
+..+..++.|+.+++++|.+++. ++..+...++|+.+++++|.+++
T Consensus 158 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~ 207 (319)
T cd00116 158 AKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTD 207 (319)
T ss_pred HHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccCh
Confidence 23345566788888888887742 23344555688888888887753
No 25
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.76 E-value=4.5e-08 Score=76.79 Aligned_cols=103 Identities=28% Similarity=0.277 Sum_probs=43.8
Q ss_pred ceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcEE
Q 037844 12 HVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKVL 91 (126)
Q Consensus 12 ~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l 91 (126)
+++.|++++|.+. .+ +..+..+++|++++++++... ..+|. +..+++|+.|++.+|.....+|..++.+++|+.|
T Consensus 612 ~L~~L~L~~s~l~-~L--~~~~~~l~~Lk~L~Ls~~~~l-~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L 686 (1153)
T PLN03210 612 NLVKLQMQGSKLE-KL--WDGVHSLTGLRNIDLRGSKNL-KEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDL 686 (1153)
T ss_pred CCcEEECcCcccc-cc--ccccccCCCCCEEECCCCCCc-CcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEE
Confidence 4444444444444 22 333344444555555443322 12332 3444455555554443333444444445555555
Q ss_pred EeecCccCccchHHHhcCCCCcEEEccCC
Q 037844 92 AIIKCNFCSRITFLLRNLTQLIILHLSQN 120 (126)
Q Consensus 92 ~l~~n~~~~~~p~~l~~~~~L~~l~l~~n 120 (126)
++++|...+.+|..+ .+++|+.|++++|
T Consensus 687 ~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc 714 (1153)
T PLN03210 687 DMSRCENLEILPTGI-NLKSLYRLNLSGC 714 (1153)
T ss_pred eCCCCCCcCccCCcC-CCCCCCEEeCCCC
Confidence 554443333333322 3344444444443
No 26
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.76 E-value=2.8e-08 Score=74.67 Aligned_cols=98 Identities=20% Similarity=0.246 Sum_probs=54.4
Q ss_pred CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcE
Q 037844 11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKV 90 (126)
Q Consensus 11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~ 90 (126)
++++.|++++|.++ .+ |..+. .+|++|++++|.++ .+|..+ ...|+.+++++|.+. .+|..+. ..|+.
T Consensus 199 ~~L~~L~Ls~N~Lt-sL--P~~l~--~nL~~L~Ls~N~Lt--sLP~~l--~~~L~~L~Ls~N~L~-~LP~~l~--s~L~~ 266 (754)
T PRK15370 199 EQITTLILDNNELK-SL--PENLQ--GNIKTLYANSNQLT--SIPATL--PDTIQEMELSINRIT-ELPERLP--SALQS 266 (754)
T ss_pred cCCcEEEecCCCCC-cC--Chhhc--cCCCEEECCCCccc--cCChhh--hccccEEECcCCccC-cCChhHh--CCCCE
Confidence 35666666666666 34 33332 35666666666665 344433 235666666666655 4444332 35666
Q ss_pred EEeecCccCccchHHHhcCCCCcEEEccCCcCe
Q 037844 91 LAIIKCNFCSRITFLLRNLTQLIILHLSQNSFR 123 (126)
Q Consensus 91 l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~ 123 (126)
|+++.|++. .+|..+. ++|+.|++++|+++
T Consensus 267 L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt 296 (754)
T PRK15370 267 LDLFHNKIS-CLPENLP--EELRYLSVYDNSIR 296 (754)
T ss_pred EECcCCccC-ccccccC--CCCcEEECCCCccc
Confidence 666666666 4454332 35666666666654
No 27
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.72 E-value=1e-07 Score=74.86 Aligned_cols=104 Identities=17% Similarity=0.165 Sum_probs=83.4
Q ss_pred CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcE
Q 037844 11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKV 90 (126)
Q Consensus 11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~ 90 (126)
..++.|.+.++.+. .+ |..+ ...+|++|++.+|.+. .++..+..+++|+.++++++......|. +..+++|+.
T Consensus 589 ~~Lr~L~~~~~~l~-~l--P~~f-~~~~L~~L~L~~s~l~--~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~ 661 (1153)
T PLN03210 589 PKLRLLRWDKYPLR-CM--PSNF-RPENLVKLQMQGSKLE--KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLET 661 (1153)
T ss_pred cccEEEEecCCCCC-CC--CCcC-CccCCcEEECcCcccc--ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccE
Confidence 35777888877766 55 5554 4578999999999887 5667777899999999998764445554 778899999
Q ss_pred EEeecCccCccchHHHhcCCCCcEEEccCCc
Q 037844 91 LAIIKCNFCSRITFLLRNLTQLIILHLSQNS 121 (126)
Q Consensus 91 l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~ 121 (126)
|++.+|.....+|..+..+++|+.|++++|.
T Consensus 662 L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~ 692 (1153)
T PLN03210 662 LKLSDCSSLVELPSSIQYLNKLEDLDMSRCE 692 (1153)
T ss_pred EEecCCCCccccchhhhccCCCCEEeCCCCC
Confidence 9999988777899999999999999999864
No 28
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.69 E-value=2.7e-08 Score=74.71 Aligned_cols=99 Identities=21% Similarity=0.231 Sum_probs=53.0
Q ss_pred ceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhh-------------------CCCCCCEEEcccC
Q 037844 12 HVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKII-------------------NLSRLSYLNLFYS 72 (126)
Q Consensus 12 ~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-------------------~l~~L~~l~l~~~ 72 (126)
+|+.|++++|.+. .+ |..+. ++|+.|++++|.++ .+|..+. ..++|+.|++++|
T Consensus 263 ~L~~L~Ls~N~L~-~L--P~~l~--~sL~~L~Ls~N~Lt--~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N 335 (754)
T PRK15370 263 ALQSLDLFHNKIS-CL--PENLP--EELRYLSVYDNSIR--TLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGEN 335 (754)
T ss_pred CCCEEECcCCccC-cc--ccccC--CCCcEEECCCCccc--cCcccchhhHHHHHhcCCccccCCccccccceeccccCC
Confidence 5666666666666 34 43332 35666666666554 2222111 1234555555555
Q ss_pred cCcCcCCccccCCCCCcEEEeecCccCccchHHHhcCCCCcEEEccCCcCe
Q 037844 73 SLSGGLPVSTKYLRSLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFR 123 (126)
Q Consensus 73 ~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~ 123 (126)
.+++ +|..+ .++|+.|++++|++. .+|..+ .++|+.|++++|.++
T Consensus 336 ~Lt~-LP~~l--~~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt 380 (754)
T PRK15370 336 ALTS-LPASL--PPELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT 380 (754)
T ss_pred cccc-CChhh--cCcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC
Confidence 5542 34332 246677777777666 455443 246677777776654
No 29
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.65 E-value=1.9e-08 Score=76.62 Aligned_cols=106 Identities=25% Similarity=0.206 Sum_probs=78.6
Q ss_pred CceEEEEcCCCC--cccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCC
Q 037844 11 NHVIKLDLPSSC--LQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSL 88 (126)
Q Consensus 11 ~~l~~L~ls~n~--l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L 88 (126)
+.+++|-+..|. +. ..+ ...|..|+.|+.||+++|.-- ..+|..++.+-+|++|++..+.+. .+|..++.+..|
T Consensus 545 ~~L~tLll~~n~~~l~-~is-~~ff~~m~~LrVLDLs~~~~l-~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L 620 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLL-EIS-GEFFRSLPLLRVLDLSGNSSL-SKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKL 620 (889)
T ss_pred CccceEEEeecchhhh-hcC-HHHHhhCcceEEEECCCCCcc-CcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhh
Confidence 457777777775 33 220 233666888888888887654 368888888888888888888887 778888888888
Q ss_pred cEEEeecCccCccchHHHhcCCCCcEEEccCC
Q 037844 89 KVLAIIKCNFCSRITFLLRNLTQLIILHLSQN 120 (126)
Q Consensus 89 ~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n 120 (126)
.+|++..+.....+|.....+.+|+++.+..-
T Consensus 621 ~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 621 IYLNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred heeccccccccccccchhhhcccccEEEeecc
Confidence 88888877765566666777888888887654
No 30
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.62 E-value=1.5e-08 Score=70.16 Aligned_cols=91 Identities=23% Similarity=0.196 Sum_probs=68.0
Q ss_pred cccCCCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccC
Q 037844 5 AEKKQRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKY 84 (126)
Q Consensus 5 ~~~~~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~ 84 (126)
.|+...++++.|++++|+++..- +.+|.....+++|++..|++. ..-..-|..+..|..|++.+|+++...|..|..
T Consensus 268 ~cf~~L~~L~~lnlsnN~i~~i~--~~aFe~~a~l~eL~L~~N~l~-~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~ 344 (498)
T KOG4237|consen 268 KCFKKLPNLRKLNLSNNKITRIE--DGAFEGAAELQELYLTRNKLE-FVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQT 344 (498)
T ss_pred HHHhhcccceEeccCCCccchhh--hhhhcchhhhhhhhcCcchHH-HHHHHhhhccccceeeeecCCeeEEEecccccc
Confidence 45566788888888888888655 677777888888888888876 233344556778888888888888777777877
Q ss_pred CCCCcEEEeecCcc
Q 037844 85 LRSLKVLAIIKCNF 98 (126)
Q Consensus 85 l~~L~~l~l~~n~~ 98 (126)
+.+|..+++-.|++
T Consensus 345 ~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 345 LFSLSTLNLLSNPF 358 (498)
T ss_pred cceeeeeehccCcc
Confidence 88888888777665
No 31
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.61 E-value=8.6e-09 Score=74.08 Aligned_cols=104 Identities=20% Similarity=0.187 Sum_probs=60.5
Q ss_pred eEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcEEE
Q 037844 13 VIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKVLA 92 (126)
Q Consensus 13 l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ 92 (126)
|+.|.+++|+++ .+ |..++-+..|..|+.+.|.+. .+|..++.+.+|+.+.+..|.+. .+|..+.. -.|..||
T Consensus 145 Lkvli~sNNkl~-~l--p~~ig~~~tl~~ld~s~nei~--slpsql~~l~slr~l~vrRn~l~-~lp~El~~-LpLi~lD 217 (722)
T KOG0532|consen 145 LKVLIVSNNKLT-SL--PEEIGLLPTLAHLDVSKNEIQ--SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCS-LPLIRLD 217 (722)
T ss_pred ceeEEEecCccc-cC--CcccccchhHHHhhhhhhhhh--hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhC-Cceeeee
Confidence 344444444444 33 444444445555555555553 34555555555555555555554 34444442 2366777
Q ss_pred eecCccCccchHHHhcCCCCcEEEccCCcCee
Q 037844 93 IIKCNFCSRITFLLRNLTQLIILHLSQNSFRG 124 (126)
Q Consensus 93 l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~ 124 (126)
++.|++. .+|-.|.+|+.|++|-|.+|++..
T Consensus 218 fScNkis-~iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 218 FSCNKIS-YLPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred cccCcee-ecchhhhhhhhheeeeeccCCCCC
Confidence 7777777 777777778888888887777653
No 32
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.59 E-value=2.3e-09 Score=76.97 Aligned_cols=104 Identities=30% Similarity=0.342 Sum_probs=77.8
Q ss_pred CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcE
Q 037844 11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKV 90 (126)
Q Consensus 11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~ 90 (126)
..++.++++.|++. .+ |..+..++ |+.|-+++|+++ .+|+.++....|..++.+.|.+. .+|..++.+.+|+.
T Consensus 121 ~~lt~l~ls~NqlS-~l--p~~lC~lp-Lkvli~sNNkl~--~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~ 193 (722)
T KOG0532|consen 121 EALTFLDLSSNQLS-HL--PDGLCDLP-LKVLIVSNNKLT--SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRD 193 (722)
T ss_pred hHHHHhhhccchhh-cC--ChhhhcCc-ceeEEEecCccc--cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHH
Confidence 45677777777777 55 55655555 677777888776 57777777777888888887775 55666777888888
Q ss_pred EEeecCccCccchHHHhcCCCCcEEEccCCcCe
Q 037844 91 LAIIKCNFCSRITFLLRNLTQLIILHLSQNSFR 123 (126)
Q Consensus 91 l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~ 123 (126)
+++..|.+. .+|+.+.. -.|..||++.|+|+
T Consensus 194 l~vrRn~l~-~lp~El~~-LpLi~lDfScNkis 224 (722)
T KOG0532|consen 194 LNVRRNHLE-DLPEELCS-LPLIRLDFSCNKIS 224 (722)
T ss_pred HHHhhhhhh-hCCHHHhC-CceeeeecccCcee
Confidence 888888887 67777774 45899999999886
No 33
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.54 E-value=1.3e-07 Score=45.98 Aligned_cols=35 Identities=29% Similarity=0.329 Sum_probs=15.9
Q ss_pred CcEEEeecCccCccchHHHhcCCCCcEEEccCCcCe
Q 037844 88 LKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFR 123 (126)
Q Consensus 88 L~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~ 123 (126)
|++|++++|+++ .+|+.++.+++|+.|++++|+|+
T Consensus 3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 444444444444 33444445555555555555443
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.53 E-value=6.3e-08 Score=67.86 Aligned_cols=103 Identities=28% Similarity=0.285 Sum_probs=70.6
Q ss_pred CceEEEEcCCCCcccccCCCccccccc-cCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCc
Q 037844 11 NHVIKLDLPSSCLQDSINSSSGLFKLI-HLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLK 89 (126)
Q Consensus 11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~ 89 (126)
+.++.|++.+|.+. .+ ++....+. +|+.|+++.|.+. .+|..+..++.|+.++++.|.+. .++...+..+.|+
T Consensus 116 ~~l~~L~l~~n~i~-~i--~~~~~~~~~nL~~L~l~~N~i~--~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~ 189 (394)
T COG4886 116 TNLTSLDLDNNNIT-DI--PPLIGLLKSNLKELDLSDNKIE--SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLN 189 (394)
T ss_pred cceeEEecCCcccc-cC--ccccccchhhcccccccccchh--hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhh
Confidence 45777777777777 44 45555553 7788888888776 45556677778888888888776 4454444667777
Q ss_pred EEEeecCccCccchHHHhcCCCCcEEEccCC
Q 037844 90 VLAIIKCNFCSRITFLLRNLTQLIILHLSQN 120 (126)
Q Consensus 90 ~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n 120 (126)
.+++++|.+. .+|........|+.+.+++|
T Consensus 190 ~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N 219 (394)
T COG4886 190 NLDLSGNKIS-DLPPEIELLSALEELDLSNN 219 (394)
T ss_pred heeccCCccc-cCchhhhhhhhhhhhhhcCC
Confidence 7777777777 66665555555777777776
No 35
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.50 E-value=5.3e-09 Score=77.18 Aligned_cols=106 Identities=25% Similarity=0.254 Sum_probs=72.9
Q ss_pred CCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCc
Q 037844 10 RNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLK 89 (126)
Q Consensus 10 ~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~ 89 (126)
+..+.+.++++|.+. .. ..++.-++.++.|+++.|++. .+. .+..++.|.+||++.|.++ ..|.--..-..|+
T Consensus 163 Wn~L~~a~fsyN~L~-~m--D~SLqll~ale~LnLshNk~~--~v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~ 235 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLV-LM--DESLQLLPALESLNLSHNKFT--KVD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQ 235 (1096)
T ss_pred hhhHhhhhcchhhHH-hH--HHHHHHHHHhhhhccchhhhh--hhH-HHHhcccccccccccchhc-cccccchhhhhhe
Confidence 345677778888877 44 566677788888888888887 343 6777888888888888886 4443222223488
Q ss_pred EEEeecCccCccchHHHhcCCCCcEEEccCCcCee
Q 037844 90 VLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRG 124 (126)
Q Consensus 90 ~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~ 124 (126)
.|.+.+|-++. -..+.++.+|+.||++.|-+++
T Consensus 236 ~L~lrnN~l~t--L~gie~LksL~~LDlsyNll~~ 268 (1096)
T KOG1859|consen 236 LLNLRNNALTT--LRGIENLKSLYGLDLSYNLLSE 268 (1096)
T ss_pred eeeecccHHHh--hhhHHhhhhhhccchhHhhhhc
Confidence 88888887762 2245667778888888776654
No 36
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.42 E-value=1.4e-08 Score=61.04 Aligned_cols=77 Identities=19% Similarity=0.193 Sum_probs=33.6
Q ss_pred cCceeEeccCcccCcchhhhhh-CCCCCCEEEcccCcCcCcCCccccCCCCCcEEEeecCccCccchHHHhcCCCCcEEE
Q 037844 38 HLKWLILLFNKFSGFEILIKII-NLSRLSYLNLFYSSLSGGLPVSTKYLRSLKVLAIIKCNFCSRITFLLRNLTQLIILH 116 (126)
Q Consensus 38 ~L~~L~l~~n~~~~~~~~~~~~-~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~l~~~~~L~~l~ 116 (126)
.|+..++++|.+. ..|+.+. .++..+.+++++|.++ ..|..+..++.|+.+++..|++. ..|..+..+.++..|+
T Consensus 54 el~~i~ls~N~fk--~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 54 ELTKISLSDNGFK--KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLD 129 (177)
T ss_pred eEEEEecccchhh--hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhc
Confidence 3444445555444 2333332 2234444555555444 33444444455555555555444 3344444344444444
Q ss_pred cc
Q 037844 117 LS 118 (126)
Q Consensus 117 l~ 118 (126)
.-
T Consensus 130 s~ 131 (177)
T KOG4579|consen 130 SP 131 (177)
T ss_pred CC
Confidence 33
No 37
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.41 E-value=2.9e-07 Score=69.40 Aligned_cols=85 Identities=22% Similarity=0.194 Sum_probs=61.8
Q ss_pred ceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcEE
Q 037844 12 HVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKVL 91 (126)
Q Consensus 12 ~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l 91 (126)
+|+.|++++|.+. .+ |.. .++|+.|++++|.++ .+|.. ...|+.+++++|+++ .+|..+..++.|+.+
T Consensus 383 ~L~~LdLs~N~Lt-~L--P~l---~s~L~~LdLS~N~Ls--sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~L 450 (788)
T PRK15387 383 GLKELIVSGNRLT-SL--PVL---PSELKELMVSGNRLT--SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTV 450 (788)
T ss_pred ccceEEecCCccc-CC--CCc---ccCCCEEEccCCcCC--CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeE
Confidence 4555556665555 23 322 245777777777776 35542 346888999999997 689889999999999
Q ss_pred EeecCccCccchHHHhc
Q 037844 92 AIIKCNFCSRITFLLRN 108 (126)
Q Consensus 92 ~l~~n~~~~~~p~~l~~ 108 (126)
++++|++++..+..+..
T Consensus 451 dLs~N~Ls~~~~~~L~~ 467 (788)
T PRK15387 451 NLEGNPLSERTLQALRE 467 (788)
T ss_pred ECCCCCCCchHHHHHHH
Confidence 99999999887776643
No 38
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.40 E-value=1.1e-07 Score=66.71 Aligned_cols=105 Identities=31% Similarity=0.384 Sum_probs=62.4
Q ss_pred ceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcEE
Q 037844 12 HVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKVL 91 (126)
Q Consensus 12 ~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l 91 (126)
++++|+++.|++. .+ |..+..++.|+.|+++.|.+. .++...+..+.++.+++++|++. .+|........|+.+
T Consensus 141 nL~~L~l~~N~i~-~l--~~~~~~l~~L~~L~l~~N~l~--~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l 214 (394)
T COG4886 141 NLKELDLSDNKIE-SL--PSPLRNLPNLKNLDLSFNDLS--DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEEL 214 (394)
T ss_pred hcccccccccchh-hh--hhhhhccccccccccCCchhh--hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhh
Confidence 6777777777766 33 345666777777777777776 45554446666777777777665 344433333335555
Q ss_pred EeecC-----------------------ccCccchHHHhcCCCCcEEEccCCcCe
Q 037844 92 AIIKC-----------------------NFCSRITFLLRNLTQLIILHLSQNSFR 123 (126)
Q Consensus 92 ~l~~n-----------------------~~~~~~p~~l~~~~~L~~l~l~~n~i~ 123 (126)
.+++| ++. .++..++.+++++.+++++|.++
T Consensus 215 ~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~ 268 (394)
T COG4886 215 DLSNNSIIELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS 268 (394)
T ss_pred hhcCCcceecchhhhhcccccccccCCceee-eccchhccccccceecccccccc
Confidence 55555 333 22445555566666666666654
No 39
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=8.7e-08 Score=67.02 Aligned_cols=87 Identities=28% Similarity=0.239 Sum_probs=37.9
Q ss_pred CCceEEEEcCCCCcccccCCCcc-ccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCC
Q 037844 10 RNHVIKLDLPSSCLQDSINSSSG-LFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSL 88 (126)
Q Consensus 10 ~~~l~~L~ls~n~l~~~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L 88 (126)
.++|+.|+++.|.+.... ... -..+++|+.|.++.|.+++..+......+|++..+++..|..-.........+..|
T Consensus 171 Lp~Le~LNls~Nrl~~~~--~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L 248 (505)
T KOG3207|consen 171 LPSLENLNLSSNRLSNFI--SSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTL 248 (505)
T ss_pred cccchhcccccccccCCc--cccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHH
Confidence 345555555555544222 111 11234555555555555533333334445555555555552111111112234445
Q ss_pred cEEEeecCcc
Q 037844 89 KVLAIIKCNF 98 (126)
Q Consensus 89 ~~l~l~~n~~ 98 (126)
+.|+|++|++
T Consensus 249 ~~LdLs~N~l 258 (505)
T KOG3207|consen 249 QELDLSNNNL 258 (505)
T ss_pred hhccccCCcc
Confidence 5555555544
No 40
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.33 E-value=4.7e-07 Score=69.26 Aligned_cols=107 Identities=26% Similarity=0.283 Sum_probs=82.2
Q ss_pred cCCCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCC
Q 037844 7 KKQRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLR 86 (126)
Q Consensus 7 ~~~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~ 86 (126)
+...+.++.||+++|.-.+.+ |..++.+-+|++|+++++.++ .+|..+..+..|.+|++..+......+.....|+
T Consensus 567 f~~m~~LrVLDLs~~~~l~~L--P~~I~~Li~LryL~L~~t~I~--~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~ 642 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKL--PSSIGELVHLRYLDLSDTGIS--HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQ 642 (889)
T ss_pred HhhCcceEEEECCCCCccCcC--ChHHhhhhhhhcccccCCCcc--ccchHHHHHHhhheeccccccccccccchhhhcc
Confidence 345789999999998766788 899999999999999999998 6999999999999999998876545566666799
Q ss_pred CCcEEEeecCccC--ccchHHHhcCCCCcEEEc
Q 037844 87 SLKVLAIIKCNFC--SRITFLLRNLTQLIILHL 117 (126)
Q Consensus 87 ~L~~l~l~~n~~~--~~~p~~l~~~~~L~~l~l 117 (126)
+|++|.+..-... ...-..+..+..|+.+..
T Consensus 643 ~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 643 SLRVLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred cccEEEeeccccccchhhHHhhhcccchhhhee
Confidence 9999998765422 222233344444544443
No 41
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.32 E-value=1.5e-06 Score=42.20 Aligned_cols=34 Identities=29% Similarity=0.325 Sum_probs=13.8
Q ss_pred CceeEeccCcccCcchhhhhhCCCCCCEEEcccCcC
Q 037844 39 LKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSL 74 (126)
Q Consensus 39 L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~ 74 (126)
|++|++++|.++ .+|+.+..+++|+.+++++|++
T Consensus 3 L~~L~l~~N~i~--~l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 3 LEELDLSNNQIT--DLPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp -SEEEETSSS-S--SHGGHGTTCTTSSEEEETSSCC
T ss_pred ceEEEccCCCCc--ccCchHhCCCCCCEEEecCCCC
Confidence 444444444443 2333344444444444444444
No 42
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.31 E-value=1.5e-08 Score=61.00 Aligned_cols=107 Identities=17% Similarity=0.170 Sum_probs=76.3
Q ss_pred CceEEEEcCCCCcccccCCCccccc-cccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCc
Q 037844 11 NHVIKLDLPSSCLQDSINSSSGLFK-LIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLK 89 (126)
Q Consensus 11 ~~l~~L~ls~n~l~~~~~~~~~~~~-l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~ 89 (126)
-+++..++++|.+. .+ |+.+.. ++.++.+++++|.++ .+|..++.++.|+.++++.|.+. ..|.-+..+.++.
T Consensus 53 ~el~~i~ls~N~fk-~f--p~kft~kf~t~t~lNl~~neis--dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~ 126 (177)
T KOG4579|consen 53 YELTKISLSDNGFK-KF--PKKFTIKFPTATTLNLANNEIS--DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLD 126 (177)
T ss_pred ceEEEEecccchhh-hC--CHHHhhccchhhhhhcchhhhh--hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHH
Confidence 46778888999888 44 555544 457888999999987 58888888999999999998886 5666666677888
Q ss_pred EEEeecCccCccchHHHhcCCCCcEEEccCCcCee
Q 037844 90 VLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRG 124 (126)
Q Consensus 90 ~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~ 124 (126)
.|+..+|... +++-.+..-...-..+++++.+.|
T Consensus 127 ~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~ 160 (177)
T KOG4579|consen 127 MLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGD 160 (177)
T ss_pred HhcCCCCccc-cCcHHHhccccHHHHHhcCCcccc
Confidence 8888888877 555544333333344445555544
No 43
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.25 E-value=2.2e-06 Score=54.74 Aligned_cols=101 Identities=20% Similarity=0.102 Sum_probs=53.7
Q ss_pred eEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCc-CCccccCCCCCcEE
Q 037844 13 VIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGG-LPVSTKYLRSLKVL 91 (126)
Q Consensus 13 l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~-~~~~~~~l~~L~~l 91 (126)
...++++.|.+. .+ ..+..++.|.+|.+.+|.++ ...|.--..++.+..|.+.+|++... ....+..+|.|++|
T Consensus 44 ~d~iDLtdNdl~-~l---~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 44 FDAIDLTDNDLR-KL---DNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred cceecccccchh-hc---ccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 345666666655 22 34555666667777777666 22222222345666666666665411 01224456666666
Q ss_pred EeecCccCccc---hHHHhcCCCCcEEEcc
Q 037844 92 AIIKCNFCSRI---TFLLRNLTQLIILHLS 118 (126)
Q Consensus 92 ~l~~n~~~~~~---p~~l~~~~~L~~l~l~ 118 (126)
.+-+|+++..- -..+..+++|+.||+.
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehh
Confidence 66666665311 1134456666666643
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.19 E-value=2.3e-08 Score=73.94 Aligned_cols=104 Identities=24% Similarity=0.244 Sum_probs=78.4
Q ss_pred CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhh-hhCCCCCCEEEcccCcCcCcCCccccCCCCCc
Q 037844 11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIK-IINLSRLSYLNLFYSSLSGGLPVSTKYLRSLK 89 (126)
Q Consensus 11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~ 89 (126)
+.++.|++++|+++. . +.+..++.|+.||+++|.+. .+|.. ...+. |+.|.+++|.++.. ..+.++.+|+
T Consensus 187 ~ale~LnLshNk~~~-v---~~Lr~l~~LkhLDlsyN~L~--~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~LksL~ 257 (1096)
T KOG1859|consen 187 PALESLNLSHNKFTK-V---DNLRRLPKLKHLDLSYNCLR--HVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKSLY 257 (1096)
T ss_pred HHhhhhccchhhhhh-h---HHHHhcccccccccccchhc--cccccchhhhh-heeeeecccHHHhh--hhHHhhhhhh
Confidence 678999999999984 3 36788899999999999986 45542 12333 99999999988732 4467889999
Q ss_pred EEEeecCccCcc-chHHHhcCCCCcEEEccCCcCe
Q 037844 90 VLAIIKCNFCSR-ITFLLRNLTQLIILHLSQNSFR 123 (126)
Q Consensus 90 ~l~l~~n~~~~~-~p~~l~~~~~L~~l~l~~n~i~ 123 (126)
.||++.|-+.+. --+.++.+..|+.|++-+|++.
T Consensus 258 ~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 258 GLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred ccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 999999987642 1234566778888888888763
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.17 E-value=7.1e-07 Score=63.20 Aligned_cols=103 Identities=29% Similarity=0.287 Sum_probs=56.4
Q ss_pred CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcE
Q 037844 11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKV 90 (126)
Q Consensus 11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~ 90 (126)
.+++.|++..|.+.. + ...+..+++|++|++++|.++ .+ ..+..++.|+.|++.+|.+.. ...+..+..|+.
T Consensus 95 ~~l~~l~l~~n~i~~-i--~~~l~~~~~L~~L~ls~N~I~--~i-~~l~~l~~L~~L~l~~N~i~~--~~~~~~l~~L~~ 166 (414)
T KOG0531|consen 95 KSLEALDLYDNKIEK-I--ENLLSSLVNLQVLDLSFNKIT--KL-EGLSTLTLLKELNLSGNLISD--ISGLESLKSLKL 166 (414)
T ss_pred cceeeeeccccchhh-c--ccchhhhhcchheeccccccc--cc-cchhhccchhhheeccCcchh--ccCCccchhhhc
Confidence 456666666666663 2 222455666666666666665 12 224455556666666666642 233444566666
Q ss_pred EEeecCccCccch-HHHhcCCCCcEEEccCCcC
Q 037844 91 LAIIKCNFCSRIT-FLLRNLTQLIILHLSQNSF 122 (126)
Q Consensus 91 l~l~~n~~~~~~p-~~l~~~~~L~~l~l~~n~i 122 (126)
+++++|.+...-+ . ...+.+++.+++.+|.+
T Consensus 167 l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 167 LDLSYNRIVDIENDE-LSELISLEELDLGGNSI 198 (414)
T ss_pred ccCCcchhhhhhhhh-hhhccchHHHhccCCch
Confidence 6666666663222 1 34555666666666544
No 46
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.11 E-value=6.7e-06 Score=52.54 Aligned_cols=102 Identities=23% Similarity=0.157 Sum_probs=74.6
Q ss_pred EEEEcCCCCcccccCCCccccc-cccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcEEE
Q 037844 14 IKLDLPSSCLQDSINSSSGLFK-LIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKVLA 92 (126)
Q Consensus 14 ~~L~ls~n~l~~~~~~~~~~~~-l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ 92 (126)
+++++++.++.... . ++- +.....+|+++|.+. . .+.+..++.|.+|.+++|+++...|.--..++.++.|.
T Consensus 22 ~e~~LR~lkip~ie---n-lg~~~d~~d~iDLtdNdl~--~-l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~ 94 (233)
T KOG1644|consen 22 RELDLRGLKIPVIE---N-LGATLDQFDAIDLTDNDLR--K-LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLI 94 (233)
T ss_pred cccccccccccchh---h-ccccccccceecccccchh--h-cccCCCccccceEEecCCcceeeccchhhhccccceEE
Confidence 56777777655221 1 222 345678899999885 2 34577889999999999999866666555678899999
Q ss_pred eecCccCccch--HHHhcCCCCcEEEccCCcCe
Q 037844 93 IIKCNFCSRIT--FLLRNLTQLIILHLSQNSFR 123 (126)
Q Consensus 93 l~~n~~~~~~p--~~l~~~~~L~~l~l~~n~i~ 123 (126)
+.+|++. ++. ..+..+++|++|.+-+|+++
T Consensus 95 LtnNsi~-~l~dl~pLa~~p~L~~Ltll~Npv~ 126 (233)
T KOG1644|consen 95 LTNNSIQ-ELGDLDPLASCPKLEYLTLLGNPVE 126 (233)
T ss_pred ecCcchh-hhhhcchhccCCccceeeecCCchh
Confidence 9999887 332 24678899999999998875
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.11 E-value=5.6e-07 Score=63.71 Aligned_cols=105 Identities=27% Similarity=0.247 Sum_probs=81.2
Q ss_pred CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcE
Q 037844 11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKV 90 (126)
Q Consensus 11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~ 90 (126)
..+..++++.|.+.. . ...+..+.+++.+++..|.+. .+...+..+++|+++++++|.++.. ..+..++.|+.
T Consensus 72 ~~l~~l~l~~n~i~~-~--~~~l~~~~~l~~l~l~~n~i~--~i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~ 144 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAK-I--LNHLSKLKSLEALDLYDNKIE--KIENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKE 144 (414)
T ss_pred HhHHhhccchhhhhh-h--hcccccccceeeeeccccchh--hcccchhhhhcchheeccccccccc--cchhhccchhh
Confidence 445666677777663 2 255788899999999999997 3444377899999999999999743 44667888999
Q ss_pred EEeecCccCccchHHHhcCCCCcEEEccCCcCee
Q 037844 91 LAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRG 124 (126)
Q Consensus 91 l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~ 124 (126)
|++.+|.+. .+. .+..+..|+.+++++|.++.
T Consensus 145 L~l~~N~i~-~~~-~~~~l~~L~~l~l~~n~i~~ 176 (414)
T KOG0531|consen 145 LNLSGNLIS-DIS-GLESLKSLKLLDLSYNRIVD 176 (414)
T ss_pred heeccCcch-hcc-CCccchhhhcccCCcchhhh
Confidence 999999998 332 34557899999999998764
No 48
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.94 E-value=4.1e-06 Score=57.30 Aligned_cols=111 Identities=18% Similarity=0.139 Sum_probs=67.3
Q ss_pred CceEEEEcCCCCcccccCCCccc----cccccCceeEeccCcccC---cc---------hhhhhhCCCCCCEEEcccCcC
Q 037844 11 NHVIKLDLPSSCLQDSINSSSGL----FKLIHLKWLILLFNKFSG---FE---------ILIKIINLSRLSYLNLFYSSL 74 (126)
Q Consensus 11 ~~l~~L~ls~n~l~~~~~~~~~~----~~l~~L~~L~l~~n~~~~---~~---------~~~~~~~l~~L~~l~l~~~~~ 74 (126)
+++++|+||.|.+.... ++.+ .+...|++|+|.+|.+.. .. ...-.+.-+.|+.+...+|++
T Consensus 92 ~~L~~ldLSDNA~G~~g--~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 92 PKLQKLDLSDNAFGPKG--IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL 169 (382)
T ss_pred CceeEeeccccccCccc--hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence 58999999999887443 3333 445678889999887741 11 112233457788888888887
Q ss_pred cCcCC----ccccCCCCCcEEEeecCccCcc----chHHHhcCCCCcEEEccCCcCe
Q 037844 75 SGGLP----VSTKYLRSLKVLAIIKCNFCSR----ITFLLRNLTQLIILHLSQNSFR 123 (126)
Q Consensus 75 ~~~~~----~~~~~l~~L~~l~l~~n~~~~~----~p~~l~~~~~L~~l~l~~n~i~ 123 (126)
..... ..+...+.|+.+.+..|.+... +...+.+++.|++||+.+|-++
T Consensus 170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft 226 (382)
T KOG1909|consen 170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT 226 (382)
T ss_pred ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhh
Confidence 63211 2234455666666666655421 2234556666666666666543
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.87 E-value=1.1e-05 Score=54.68 Aligned_cols=64 Identities=23% Similarity=0.267 Sum_probs=41.1
Q ss_pred CCCCceEEEEcCCCCcccccCCCccc-cccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcC
Q 037844 8 KQRNHVIKLDLPSSCLQDSINSSSGL-FKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSL 74 (126)
Q Consensus 8 ~~~~~l~~L~ls~n~l~~~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~ 74 (126)
...|+++.|+++.|++...+ ..+ ..+.+|+.|-+.+..+.+......+..+|.++.+.++.|.+
T Consensus 94 e~lP~l~~LNls~N~L~s~I---~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~ 158 (418)
T KOG2982|consen 94 EQLPALTTLNLSCNSLSSDI---KSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSL 158 (418)
T ss_pred hcCccceEeeccCCcCCCcc---ccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchh
Confidence 35688888888888877543 233 35567777777776665434444555666677776666643
No 50
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=3.4e-06 Score=59.32 Aligned_cols=110 Identities=21% Similarity=0.090 Sum_probs=54.7
Q ss_pred CCceEEEEcCCCCcccc-cCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcC-CccccCCCC
Q 037844 10 RNHVIKLDLPSSCLQDS-INSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGL-PVSTKYLRS 87 (126)
Q Consensus 10 ~~~l~~L~ls~n~l~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~-~~~~~~l~~ 87 (126)
.++++.|.++.|.++.. . -..+..+++|..|++..|..-. .-.....-+..|+.|++++|.+-+.. -...+.++.
T Consensus 196 l~~lK~L~l~~CGls~k~V--~~~~~~fPsl~~L~L~~N~~~~-~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~ 272 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDV--QWILLTFPSLEVLYLEANEIIL-IKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPG 272 (505)
T ss_pred hhhhheEEeccCCCCHHHH--HHHHHhCCcHHHhhhhcccccc-eecchhhhhhHHhhccccCCcccccccccccccccc
Confidence 36777777777776621 1 1112345666777776663110 11111223455666666666554221 122345566
Q ss_pred CcEEEeecCccCcc-chH-----HHhcCCCCcEEEccCCcC
Q 037844 88 LKVLAIIKCNFCSR-ITF-----LLRNLTQLIILHLSQNSF 122 (126)
Q Consensus 88 L~~l~l~~n~~~~~-~p~-----~l~~~~~L~~l~l~~n~i 122 (126)
|..++++.+.+... .|+ ....+++|++|++..|+|
T Consensus 273 L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 273 LNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred hhhhhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence 66666666655421 111 123445666666666665
No 51
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.84 E-value=4.3e-06 Score=57.20 Aligned_cols=112 Identities=19% Similarity=0.131 Sum_probs=59.5
Q ss_pred CceEEEEcCCCCccccc--CCCccccccccCceeEeccCcccC---cchhhhhhCCCCCCEEEcccCcCcCcCCccc---
Q 037844 11 NHVIKLDLPSSCLQDSI--NSSSGLFKLIHLKWLILLFNKFSG---FEILIKIINLSRLSYLNLFYSSLSGGLPVST--- 82 (126)
Q Consensus 11 ~~l~~L~ls~n~l~~~~--~~~~~~~~l~~L~~L~l~~n~~~~---~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~--- 82 (126)
+.++.+.++.|.+...- +....+..+++|+.|++..|.++. ..+...++.+++|+.++++.+.+.......+
T Consensus 185 ~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~a 264 (382)
T KOG1909|consen 185 PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDA 264 (382)
T ss_pred cccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHH
Confidence 34555555555544210 001223445666677777666641 1234445556667777776666654433322
Q ss_pred --cCCCCCcEEEeecCccCccch----HHHhcCCCCcEEEccCCcC
Q 037844 83 --KYLRSLKVLAIIKCNFCSRIT----FLLRNLTQLIILHLSQNSF 122 (126)
Q Consensus 83 --~~l~~L~~l~l~~n~~~~~~p----~~l~~~~~L~~l~l~~n~i 122 (126)
...++|+.+.+.+|.++..-. ......+.|..|++.+|++
T Consensus 265 l~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 265 LKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 124667777777776654222 2233456677777777766
No 52
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.79 E-value=1.3e-05 Score=60.17 Aligned_cols=86 Identities=19% Similarity=0.109 Sum_probs=36.4
Q ss_pred ccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcC-cCCccccCCCCCcEEEeecCccCccc--h----HHHh
Q 037844 35 KLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSG-GLPVSTKYLRSLKVLAIIKCNFCSRI--T----FLLR 107 (126)
Q Consensus 35 ~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~-~~~~~~~~l~~L~~l~l~~n~~~~~~--p----~~l~ 107 (126)
++++|+.||++++.++ .+ ..+..+.+|+.|.+.+=.+.. ..-..+..++.|++||++..+..... . +.-.
T Consensus 171 sFpNL~sLDIS~TnI~--nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~ 247 (699)
T KOG3665|consen 171 SFPNLRSLDISGTNIS--NL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGM 247 (699)
T ss_pred ccCccceeecCCCCcc--Cc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcc
Confidence 3444444444444443 11 334444444444433333321 11112344566666666554433111 1 1122
Q ss_pred cCCCCcEEEccCCcCe
Q 037844 108 NLTQLIILHLSQNSFR 123 (126)
Q Consensus 108 ~~~~L~~l~l~~n~i~ 123 (126)
.+|.|+.||.++..++
T Consensus 248 ~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 248 VLPELRFLDCSGTDIN 263 (699)
T ss_pred cCccccEEecCCcchh
Confidence 3566666666655443
No 53
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.75 E-value=9.1e-07 Score=59.17 Aligned_cols=100 Identities=28% Similarity=0.189 Sum_probs=74.0
Q ss_pred CCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcC-CccccCCCCC
Q 037844 10 RNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGL-PVSTKYLRSL 88 (126)
Q Consensus 10 ~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~-~~~~~~l~~L 88 (126)
...++.|+.-+|.+.+. .....|+.|+.|.|+.|.++ .+ ..+..|++|+.+++..|.+.+.. ...+.++++|
T Consensus 18 l~~vkKLNcwg~~L~DI----sic~kMp~lEVLsLSvNkIs--sL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsL 90 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI----SICEKMPLLEVLSLSVNKIS--SL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSL 90 (388)
T ss_pred HHHhhhhcccCCCccHH----HHHHhcccceeEEeeccccc--cc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchh
Confidence 35677888888887743 23356888999999999987 23 44677889999999999886321 1235688999
Q ss_pred cEEEeecCccCccchH-----HHhcCCCCcEEE
Q 037844 89 KVLAIIKCNFCSRITF-----LLRNLTQLIILH 116 (126)
Q Consensus 89 ~~l~l~~n~~~~~~p~-----~l~~~~~L~~l~ 116 (126)
+.|.|..|++.+.-+. .+..+|+|+.||
T Consensus 91 r~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 91 RTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 9999999998876654 466778888776
No 54
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.67 E-value=3.3e-05 Score=50.98 Aligned_cols=102 Identities=24% Similarity=0.179 Sum_probs=61.5
Q ss_pred CCCceEEEEcCCCCcccccCCCccccccccCceeEeccC--cccCcchhhhhhCCCCCCEEEcccCcCcCcCCcc---cc
Q 037844 9 QRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFN--KFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVS---TK 83 (126)
Q Consensus 9 ~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n--~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~---~~ 83 (126)
.+..++.|.+.+..++.. ..+..|++|++|.++.| .+.+ .++--...+++|+++.+++|++.. +.. +.
T Consensus 41 ~~~~le~ls~~n~gltt~----~~~P~Lp~LkkL~lsdn~~~~~~-~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~ 113 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL----TNFPKLPKLKKLELSDNYRRVSG-GLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLK 113 (260)
T ss_pred cccchhhhhhhccceeec----ccCCCcchhhhhcccCCcccccc-cceehhhhCCceeEEeecCCcccc--ccccchhh
Confidence 334555566666666632 34566778888888888 5442 233334456888888888888762 232 34
Q ss_pred CCCCCcEEEeecCccCccc---hHHHhcCCCCcEEEc
Q 037844 84 YLRSLKVLAIIKCNFCSRI---TFLLRNLTQLIILHL 117 (126)
Q Consensus 84 ~l~~L~~l~l~~n~~~~~~---p~~l~~~~~L~~l~l 117 (126)
.+..|..|++.+|..+..- -..+..+++|+++|-
T Consensus 114 ~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 114 ELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred hhcchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 5566777777777665311 124555677777664
No 55
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.64 E-value=2.7e-05 Score=58.57 Aligned_cols=107 Identities=21% Similarity=0.248 Sum_probs=69.7
Q ss_pred CceEEEEcCCCCcc-cccCCCccccc-cccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCC
Q 037844 11 NHVIKLDLPSSCLQ-DSINSSSGLFK-LIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSL 88 (126)
Q Consensus 11 ~~l~~L~ls~n~l~-~~~~~~~~~~~-l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L 88 (126)
.+|+.|++++...- ..+ +..++. +|+|+.|.+.+-.+..+..-.-...+++|..||+++++++.. .+++.+++|
T Consensus 122 ~nL~~LdI~G~~~~s~~W--~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknL 197 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGW--PKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNL 197 (699)
T ss_pred HhhhhcCccccchhhccH--HHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccH
Confidence 56788888885432 122 333343 588888888886664222333345678888888888888633 556788888
Q ss_pred cEEEeecCccCc-cchHHHhcCCCCcEEEccCCc
Q 037844 89 KVLAIIKCNFCS-RITFLLRNLTQLIILHLSQNS 121 (126)
Q Consensus 89 ~~l~l~~n~~~~-~~p~~l~~~~~L~~l~l~~n~ 121 (126)
+.|.+.+=.+.. ..-..+..+++|++||++..+
T Consensus 198 q~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 198 QVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred HHHhccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence 888776655542 223356778888888888643
No 56
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.42 E-value=0.0001 Score=48.71 Aligned_cols=88 Identities=25% Similarity=0.271 Sum_probs=62.0
Q ss_pred cccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccC--cCcCcCCccccCCCCCcEEEeecCccCc-cchHHHhcCC
Q 037844 34 FKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYS--SLSGGLPVSTKYLRSLKVLAIIKCNFCS-RITFLLRNLT 110 (126)
Q Consensus 34 ~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~--~~~~~~~~~~~~l~~L~~l~l~~n~~~~-~~p~~l~~~~ 110 (126)
..+..|+.+.+.+..++ . -..+..+++|+.|.++.| ++.+.+......+|+|+++++++|++.. .-...+..+.
T Consensus 40 d~~~~le~ls~~n~glt--t-~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~ 116 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLT--T-LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELE 116 (260)
T ss_pred ccccchhhhhhhcccee--e-cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhc
Confidence 34456666666666665 2 234667899999999999 5555454444567999999999999873 1112456677
Q ss_pred CCcEEEccCCcCee
Q 037844 111 QLIILHLSQNSFRG 124 (126)
Q Consensus 111 ~L~~l~l~~n~i~~ 124 (126)
+|..|++++|..++
T Consensus 117 nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 117 NLKSLDLFNCSVTN 130 (260)
T ss_pred chhhhhcccCCccc
Confidence 89999999987654
No 57
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.42 E-value=1.1e-05 Score=54.24 Aligned_cols=81 Identities=23% Similarity=0.173 Sum_probs=61.6
Q ss_pred CCCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccc-----
Q 037844 8 KQRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVST----- 82 (126)
Q Consensus 8 ~~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~----- 82 (126)
..++.++.|.||-|.++. + ..+..++.|++|+|..|.+....-..-+..+++|+.|++.-|.+.+..+...
T Consensus 38 ~kMp~lEVLsLSvNkIss-L---~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VL 113 (388)
T KOG2123|consen 38 EKMPLLEVLSLSVNKISS-L---APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVL 113 (388)
T ss_pred HhcccceeEEeecccccc-c---hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHH
Confidence 567999999999999884 3 4577889999999999999731112345678999999999998887665432
Q ss_pred cCCCCCcEEE
Q 037844 83 KYLRSLKVLA 92 (126)
Q Consensus 83 ~~l~~L~~l~ 92 (126)
..+|+|+.||
T Consensus 114 R~LPnLkKLD 123 (388)
T KOG2123|consen 114 RVLPNLKKLD 123 (388)
T ss_pred HHcccchhcc
Confidence 3467777653
No 58
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=96.79 E-value=2.9e-05 Score=50.97 Aligned_cols=86 Identities=21% Similarity=0.050 Sum_probs=72.3
Q ss_pred CCCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCC
Q 037844 8 KQRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRS 87 (126)
Q Consensus 8 ~~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~ 87 (126)
..+.+++.||++.|++... ...+..+..+..++++.|.+. ..|..+.....++.+++-.|..+ ..|.+++..++
T Consensus 39 ~~~kr~tvld~~s~r~vn~---~~n~s~~t~~~rl~~sknq~~--~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~ 112 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLVNL---GKNFSILTRLVRLDLSKNQIK--FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPH 112 (326)
T ss_pred hccceeeeehhhhhHHHhh---ccchHHHHHHHHHhccHhhHh--hChhhHHHHHHHHHHHhhccchh-hCCccccccCC
Confidence 4557889999999987743 456777888899999999987 68888998888999988888776 78999999999
Q ss_pred CcEEEeecCccC
Q 037844 88 LKVLAIIKCNFC 99 (126)
Q Consensus 88 L~~l~l~~n~~~ 99 (126)
++++++-++.+.
T Consensus 113 ~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 113 PKKNEQKKTEFF 124 (326)
T ss_pred cchhhhccCcch
Confidence 999999888866
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.74 E-value=0.0045 Score=44.13 Aligned_cols=31 Identities=26% Similarity=0.278 Sum_probs=15.3
Q ss_pred CCcEEEeecCccCccchHHHhcCCCCcEEEccCC
Q 037844 87 SLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQN 120 (126)
Q Consensus 87 ~L~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n 120 (126)
+|++|++.+|... ..|..+ ..+|+.|+++.+
T Consensus 157 SLk~L~Is~c~~i-~LP~~L--P~SLk~L~ls~n 187 (426)
T PRK15386 157 SLKTLSLTGCSNI-ILPEKL--PESLQSITLHIE 187 (426)
T ss_pred cccEEEecCCCcc-cCcccc--cccCcEEEeccc
Confidence 5666666665544 223211 135666665543
No 60
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.72 E-value=0.00093 Score=45.60 Aligned_cols=84 Identities=33% Similarity=0.282 Sum_probs=45.9
Q ss_pred ccCceeEeccCcccC-cchhhhhhCCCCCCEEEcccCcCcCcCCccc-cCCCCCcEEEeecCccCccc-hHHHhcCCCCc
Q 037844 37 IHLKWLILLFNKFSG-FEILIKIINLSRLSYLNLFYSSLSGGLPVST-KYLRSLKVLAIIKCNFCSRI-TFLLRNLTQLI 113 (126)
Q Consensus 37 ~~L~~L~l~~n~~~~-~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~-~~l~~L~~l~l~~n~~~~~~-p~~l~~~~~L~ 113 (126)
..++.+|+.+|.++. ..+..-+.++|.++.++++.|.+...+ +.. -.+..|+.+-|++..+.+.- -..+..+|.++
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I-~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDI-KSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcc-ccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 456777777777751 112223346677777777777765221 222 13345666666666554322 22344556666
Q ss_pred EEEccCCc
Q 037844 114 ILHLSQNS 121 (126)
Q Consensus 114 ~l~l~~n~ 121 (126)
.++++.|+
T Consensus 150 elHmS~N~ 157 (418)
T KOG2982|consen 150 ELHMSDNS 157 (418)
T ss_pred hhhhccch
Confidence 66666653
No 61
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.66 E-value=0.0067 Score=41.10 Aligned_cols=111 Identities=21% Similarity=0.131 Sum_probs=64.2
Q ss_pred CCceEEEEcCCCCcccccCCCcccccc----ccCceeEeccCccc---Ccchh---------hhhhCCCCCCEEEcccCc
Q 037844 10 RNHVIKLDLPSSCLQDSINSSSGLFKL----IHLKWLILLFNKFS---GFEIL---------IKIINLSRLSYLNLFYSS 73 (126)
Q Consensus 10 ~~~l~~L~ls~n~l~~~~~~~~~~~~l----~~L~~L~l~~n~~~---~~~~~---------~~~~~l~~L~~l~l~~~~ 73 (126)
.++++.+++|.|.+.... |..+..+ ..|..|.+.+|.+. |..+. .....-|.|+....+.|+
T Consensus 91 cp~l~~v~LSDNAfg~~~--~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR 168 (388)
T COG5238 91 CPRLQKVDLSDNAFGSEF--PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR 168 (388)
T ss_pred CCcceeeeccccccCccc--chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch
Confidence 367788888888877665 4444332 45778888887653 11111 112234678888888887
Q ss_pred CcCcCCcc-----ccCCCCCcEEEeecCccCccc-----hHHHhcCCCCcEEEccCCcCe
Q 037844 74 LSGGLPVS-----TKYLRSLKVLAIIKCNFCSRI-----TFLLRNLTQLIILHLSQNSFR 123 (126)
Q Consensus 74 ~~~~~~~~-----~~~l~~L~~l~l~~n~~~~~~-----p~~l~~~~~L~~l~l~~n~i~ 123 (126)
+.. .+.. +.....|..+.+..|.+.-.- -..+..+.+|++||+..|-++
T Consensus 169 len-gs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft 227 (388)
T COG5238 169 LEN-GSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT 227 (388)
T ss_pred hcc-CcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence 752 2221 122235666666666655221 123456677888888877665
No 62
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.65 E-value=0.0089 Score=42.65 Aligned_cols=96 Identities=21% Similarity=0.125 Sum_probs=54.5
Q ss_pred CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccC-cCcCcCCccccCCCCCc
Q 037844 11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYS-SLSGGLPVSTKYLRSLK 89 (126)
Q Consensus 11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~-~~~~~~~~~~~~l~~L~ 89 (126)
.+++.|++++|.++ .+ | .+. .+|+.|.+.++.-- ..+|..+ .+.|+.|.+.+| .+. .+|. .|+
T Consensus 52 ~~l~~L~Is~c~L~-sL--P-~LP--~sLtsL~Lsnc~nL-tsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~------sLe 115 (426)
T PRK15386 52 RASGRLYIKDCDIE-SL--P-VLP--NELTEITIENCNNL-TTLPGSI--PEGLEKLTVCHCPEIS-GLPE------SVR 115 (426)
T ss_pred cCCCEEEeCCCCCc-cc--C-CCC--CCCcEEEccCCCCc-ccCCchh--hhhhhheEccCccccc-cccc------ccc
Confidence 56788999988777 55 4 222 35888888874432 1455443 356888888776 332 3343 244
Q ss_pred EEEeecCcc--CccchHHHhcC------------------CCCcEEEccCCcC
Q 037844 90 VLAIIKCNF--CSRITFLLRNL------------------TQLIILHLSQNSF 122 (126)
Q Consensus 90 ~l~l~~n~~--~~~~p~~l~~~------------------~~L~~l~l~~n~i 122 (126)
.|++..+.. -+.+|..+..+ ++|++|++++|..
T Consensus 116 ~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~ 168 (426)
T PRK15386 116 SLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSN 168 (426)
T ss_pred eEEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCc
Confidence 444444332 11344333222 3788899887653
No 63
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.49 E-value=0.00051 Score=46.85 Aligned_cols=40 Identities=15% Similarity=0.119 Sum_probs=20.3
Q ss_pred CCCceEEEEcCCCC-cccccCCCccccccccCceeEeccCcc
Q 037844 9 QRNHVIKLDLPSSC-LQDSINSSSGLFKLIHLKWLILLFNKF 49 (126)
Q Consensus 9 ~~~~l~~L~ls~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~~ 49 (126)
+-+.++.|+++.+. ++ +.+..--+.+++.|..|+++||..
T Consensus 232 kN~~L~~lnlsm~sG~t-~n~~~ll~~scs~L~~LNlsWc~l 272 (419)
T KOG2120|consen 232 KNSNLVRLNLSMCSGFT-ENALQLLLSSCSRLDELNLSWCFL 272 (419)
T ss_pred ccccceeeccccccccc-hhHHHHHHHhhhhHhhcCchHhhc
Confidence 33566677776643 22 110011134556677777777654
No 64
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.44 E-value=0.002 Score=26.24 Aligned_cols=10 Identities=30% Similarity=0.295 Sum_probs=4.1
Q ss_pred ceeEeccCcc
Q 037844 40 KWLILLFNKF 49 (126)
Q Consensus 40 ~~L~l~~n~~ 49 (126)
++|++++|.+
T Consensus 3 ~~Ldls~n~l 12 (22)
T PF00560_consen 3 EYLDLSGNNL 12 (22)
T ss_dssp SEEEETSSEE
T ss_pred cEEECCCCcC
Confidence 3444444443
No 65
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.29 E-value=0.0071 Score=41.00 Aligned_cols=114 Identities=13% Similarity=0.149 Sum_probs=69.4
Q ss_pred CCceEEEEcCCCCcccccCC--CccccccccCceeEeccCccc--Ccc-------hhhhhhCCCCCCEEEcccCcCcCcC
Q 037844 10 RNHVIKLDLPSSCLQDSINS--SSGLFKLIHLKWLILLFNKFS--GFE-------ILIKIINLSRLSYLNLFYSSLSGGL 78 (126)
Q Consensus 10 ~~~l~~L~ls~n~l~~~~~~--~~~~~~l~~L~~L~l~~n~~~--~~~-------~~~~~~~l~~L~~l~l~~~~~~~~~ 78 (126)
...++.+++|+|.+..+... ...+.+-.+|+...++.-... .+. +.+.+.+|++++..+++.|.+...+
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 45788899999988754200 122333455666665543221 011 2334557889999999999888777
Q ss_pred Ccccc----CCCCCcEEEeecCccCc----cchHH---------HhcCCCCcEEEccCCcCe
Q 037844 79 PVSTK----YLRSLKVLAIIKCNFCS----RITFL---------LRNLTQLIILHLSQNSFR 123 (126)
Q Consensus 79 ~~~~~----~l~~L~~l~l~~n~~~~----~~p~~---------l~~~~~L~~l~l~~n~i~ 123 (126)
|+.++ ....|.+|.+++|.+.- .+... .+.-|.|+.+..+.|++.
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle 170 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE 170 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc
Confidence 66543 44678888888886641 22211 123467888888887764
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.97 E-value=0.066 Score=31.38 Aligned_cols=105 Identities=11% Similarity=-0.001 Sum_probs=54.4
Q ss_pred cCCCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCC
Q 037844 7 KKQRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLR 86 (126)
Q Consensus 7 ~~~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~ 86 (126)
....++++.+.+.. .+...- ...+..+..++.+.+..+ +. ..-...+..+..++.+.++. .+.......|..++
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~--~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIG--ENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTT-TT--EEEETS-T--EE---TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred HhCCCCCCEEEECC-CeeEeC--hhhccccccccccccccc-cc-ccceeeeecccccccccccc-cccccccccccccc
Confidence 34445788888875 345333 456777778999988775 44 13334566777889998876 33323334566688
Q ss_pred CCcEEEeecCccCccchHHHhcCCCCcEEEccC
Q 037844 87 SLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQ 119 (126)
Q Consensus 87 ~L~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~ 119 (126)
.++.+.+..+ +...-...+.++ .++.+.+..
T Consensus 82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 8888888665 442333345555 788777764
No 67
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=95.65 E-value=0.0018 Score=44.32 Aligned_cols=58 Identities=19% Similarity=0.077 Sum_probs=23.6
Q ss_pred CceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcEEEeecC
Q 037844 39 LKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKVLAIIKC 96 (126)
Q Consensus 39 L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n 96 (126)
++++|+++..++...+..-+..|.+|+.+.+.++++.+.+...+.+-..|+.++++.+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~ 244 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMC 244 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccc
Confidence 4444444444431122222333444444444444444333333333344444444433
No 68
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.42 E-value=0.069 Score=31.31 Aligned_cols=96 Identities=16% Similarity=0.066 Sum_probs=47.7
Q ss_pred CCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCC
Q 037844 9 QRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSL 88 (126)
Q Consensus 9 ~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L 88 (126)
....++.+.+..+ +.... ...+..++.++.+.+..+... .....+..++.++.++++.+ +.......+..+ .+
T Consensus 33 ~~~~l~~i~~~~~-~~~i~--~~~F~~~~~l~~i~~~~~~~~--i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l 105 (129)
T PF13306_consen 33 NCTSLKSINFPNN-LTSIG--DNAFSNCKSLESITFPNNLKS--IGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NL 105 (129)
T ss_dssp T-TT-SEEEESST-TSCE---TTTTTT-TT-EEEEETSTT-E--E-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T-
T ss_pred ccccccccccccc-ccccc--eeeeecccccccccccccccc--cccccccccccccccccCcc-ccEEchhhhcCC-Cc
Confidence 3357889999885 55333 456777778999999763322 23345666899999999765 443334456666 88
Q ss_pred cEEEeecCccCccchHHHhcCCCC
Q 037844 89 KVLAIIKCNFCSRITFLLRNLTQL 112 (126)
Q Consensus 89 ~~l~l~~n~~~~~~p~~l~~~~~L 112 (126)
+.+.+.. .+.......|.++++|
T Consensus 106 ~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 106 KEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp -EEE-TT-B-SS----GGG-----
T ss_pred eEEEECC-CccEECCccccccccC
Confidence 8887764 4332334455565555
No 69
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.35 E-value=0.013 Score=22.27 Aligned_cols=11 Identities=18% Similarity=0.386 Sum_probs=3.6
Q ss_pred CcEEEeecCcc
Q 037844 88 LKVLAIIKCNF 98 (126)
Q Consensus 88 L~~l~l~~n~~ 98 (126)
|+.|++++|++
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 44444444443
No 70
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.96 E-value=0.0039 Score=40.13 Aligned_cols=80 Identities=19% Similarity=0.055 Sum_probs=41.4
Q ss_pred CceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCc-CcCCcccc-CCCCCcEEEeecCc-cCccchHHHhcCCCCcEE
Q 037844 39 LKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLS-GGLPVSTK-YLRSLKVLAIIKCN-FCSRITFLLRNLTQLIIL 115 (126)
Q Consensus 39 L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~-~~~~~~~~-~l~~L~~l~l~~n~-~~~~~p~~l~~~~~L~~l 115 (126)
++.++.+++.+.. .--+.+..++.++.+.+.++..- +-..+.++ -.++|+.|++++|. +++.--..+.++++|+.|
T Consensus 103 IeaVDAsds~I~~-eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 103 IEAVDASDSSIMY-EGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred EEEEecCCchHHH-HHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 5566666665541 22344555666666665555332 11111122 23567777777664 454444556666666666
Q ss_pred EccC
Q 037844 116 HLSQ 119 (126)
Q Consensus 116 ~l~~ 119 (126)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 5554
No 71
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=93.83 E-value=0.025 Score=23.29 Aligned_cols=15 Identities=13% Similarity=0.266 Sum_probs=6.2
Q ss_pred CCcEEEeecCccCcc
Q 037844 87 SLKVLAIIKCNFCSR 101 (126)
Q Consensus 87 ~L~~l~l~~n~~~~~ 101 (126)
+|+.|++++|.+++.
T Consensus 3 ~L~~L~l~~n~i~~~ 17 (24)
T PF13516_consen 3 NLETLDLSNNQITDE 17 (24)
T ss_dssp T-SEEE-TSSBEHHH
T ss_pred CCCEEEccCCcCCHH
Confidence 444555555554433
No 72
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.62 E-value=0.014 Score=37.73 Aligned_cols=84 Identities=19% Similarity=0.093 Sum_probs=58.2
Q ss_pred ceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhC-CCCCCEEEcccC-cCcCcCCccccCCCCCc
Q 037844 12 HVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIIN-LSRLSYLNLFYS-SLSGGLPVSTKYLRSLK 89 (126)
Q Consensus 12 ~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-l~~L~~l~l~~~-~~~~~~~~~~~~l~~L~ 89 (126)
.++.++-+++.+..+- -..+..++.++.|.+.+|.-.++..-+.++. .++|+.|++++| +++......+..+++|+
T Consensus 102 ~IeaVDAsds~I~~eG--le~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr 179 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEG--LEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLR 179 (221)
T ss_pred eEEEEecCCchHHHHH--HHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhH
Confidence 4777888888877654 4566777888888888887543333444443 478999999966 66655555566778888
Q ss_pred EEEeecCc
Q 037844 90 VLAIIKCN 97 (126)
Q Consensus 90 ~l~l~~n~ 97 (126)
.|.+..-+
T Consensus 180 ~L~l~~l~ 187 (221)
T KOG3864|consen 180 RLHLYDLP 187 (221)
T ss_pred HHHhcCch
Confidence 77775543
No 73
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.20 E-value=0.11 Score=21.73 Aligned_cols=14 Identities=14% Similarity=0.271 Sum_probs=8.1
Q ss_pred CCCcEEEeecCccC
Q 037844 86 RSLKVLAIIKCNFC 99 (126)
Q Consensus 86 ~~L~~l~l~~n~~~ 99 (126)
+.|+.|++++|.+.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34556666666555
No 74
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.20 E-value=0.11 Score=21.73 Aligned_cols=14 Identities=14% Similarity=0.271 Sum_probs=8.1
Q ss_pred CCCcEEEeecCccC
Q 037844 86 RSLKVLAIIKCNFC 99 (126)
Q Consensus 86 ~~L~~l~l~~n~~~ 99 (126)
+.|+.|++++|.+.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34556666666555
No 75
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=91.07 E-value=0.24 Score=21.00 Aligned_cols=14 Identities=50% Similarity=0.541 Sum_probs=8.7
Q ss_pred CCCcEEEccCCcCe
Q 037844 110 TQLIILHLSQNSFR 123 (126)
Q Consensus 110 ~~L~~l~l~~n~i~ 123 (126)
.+|+.|++++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45666666666664
No 76
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=90.73 E-value=0.084 Score=37.83 Aligned_cols=13 Identities=23% Similarity=0.590 Sum_probs=6.0
Q ss_pred CCCCcEEEeecCc
Q 037844 85 LRSLKVLAIIKCN 97 (126)
Q Consensus 85 l~~L~~l~l~~n~ 97 (126)
++.|+.+.+.++.
T Consensus 268 c~~L~~L~l~~c~ 280 (482)
T KOG1947|consen 268 CPNLETLSLSNCS 280 (482)
T ss_pred CCCcceEccCCCC
Confidence 3445555444444
No 77
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=89.42 E-value=0.28 Score=35.15 Aligned_cols=108 Identities=25% Similarity=0.120 Sum_probs=62.9
Q ss_pred CCCceEEEEcCCC-CcccccC--CCccccccccCceeEeccCc-ccCcchhhhhh-CCCCCCEEEcccCc-CcCcCCccc
Q 037844 9 QRNHVIKLDLPSS-CLQDSIN--SSSGLFKLIHLKWLILLFNK-FSGFEILIKII-NLSRLSYLNLFYSS-LSGGLPVST 82 (126)
Q Consensus 9 ~~~~l~~L~ls~n-~l~~~~~--~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~-~l~~L~~l~l~~~~-~~~~~~~~~ 82 (126)
..+++++|+++++ ......+ .......++.|+.++++++. +++ ..-..++ .++.|+.+.+.++. +++..-..+
T Consensus 212 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd-~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i 290 (482)
T KOG1947|consen 212 KCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTD-IGLSALASRCPNLETLSLSNCSNLTDEGLVSI 290 (482)
T ss_pred hCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCc-hhHHHHHhhCCCcceEccCCCCccchhHHHHH
Confidence 3467889998873 2111110 01223445778899999887 553 3333343 37899999977666 443322222
Q ss_pred -cCCCCCcEEEeecCccCc--cchHHHhcCCCCcEEEc
Q 037844 83 -KYLRSLKVLAIIKCNFCS--RITFLLRNLTQLIILHL 117 (126)
Q Consensus 83 -~~l~~L~~l~l~~n~~~~--~~p~~l~~~~~L~~l~l 117 (126)
..++.|+.++++++.... .+......+++++.+.+
T Consensus 291 ~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 291 AERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL 328 (482)
T ss_pred HHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence 457889999999886532 13333445566555443
No 78
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=88.13 E-value=0.37 Score=20.62 Aligned_cols=14 Identities=36% Similarity=0.368 Sum_probs=9.1
Q ss_pred CCCcEEEccCCcCe
Q 037844 110 TQLIILHLSQNSFR 123 (126)
Q Consensus 110 ~~L~~l~l~~n~i~ 123 (126)
++|++|++++|.|.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 45667777777664
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=86.30 E-value=0.0077 Score=39.93 Aligned_cols=85 Identities=19% Similarity=0.083 Sum_probs=63.5
Q ss_pred cccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcEEEeecCccCccchHHHhcCCCCc
Q 037844 34 FKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKVLAIIKCNFCSRITFLLRNLTQLI 113 (126)
Q Consensus 34 ~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~l~~~~~L~ 113 (126)
......+.||++.|+.. ..-..+..++.+..++++-|++. ..|..+++...+..+++..|... ..|-.++..+.++
T Consensus 39 ~~~kr~tvld~~s~r~v--n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLV--NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK 114 (326)
T ss_pred hccceeeeehhhhhHHH--hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence 44566788888888875 34455666788888899888876 66777887777778877777666 6677778888888
Q ss_pred EEEccCCcC
Q 037844 114 ILHLSQNSF 122 (126)
Q Consensus 114 ~l~l~~n~i 122 (126)
+++.-.|.+
T Consensus 115 ~~e~k~~~~ 123 (326)
T KOG0473|consen 115 KNEQKKTEF 123 (326)
T ss_pred hhhhccCcc
Confidence 888777765
No 80
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=85.83 E-value=0.58 Score=19.84 Aligned_cols=14 Identities=14% Similarity=0.278 Sum_probs=9.2
Q ss_pred CceEEEEcCCCCcc
Q 037844 11 NHVIKLDLPSSCLQ 24 (126)
Q Consensus 11 ~~l~~L~ls~n~l~ 24 (126)
++++.|++++|+++
T Consensus 2 ~~L~~L~vs~N~Lt 15 (26)
T smart00364 2 PSLKELNVSNNQLT 15 (26)
T ss_pred cccceeecCCCccc
Confidence 35666777777666
No 81
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=70.79 E-value=5.6 Score=29.01 Aligned_cols=108 Identities=21% Similarity=0.099 Sum_probs=62.6
Q ss_pred CceEEEEcCCCC-cccccCCCccc-cccccCceeEeccCccc-CcchhhhhhCCCCCCEEEcccCcCc-CcC----Cccc
Q 037844 11 NHVIKLDLPSSC-LQDSINSSSGL-FKLIHLKWLILLFNKFS-GFEILIKIINLSRLSYLNLFYSSLS-GGL----PVST 82 (126)
Q Consensus 11 ~~l~~L~ls~n~-l~~~~~~~~~~-~~l~~L~~L~l~~n~~~-~~~~~~~~~~l~~L~~l~l~~~~~~-~~~----~~~~ 82 (126)
++|+.|-++.++ +++.- -..+ .+.+.|+.+++..+... ...+..--..++.|+.+.++.+... +.. ...-
T Consensus 320 ~~L~~l~l~~c~~fsd~~--ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~ 397 (483)
T KOG4341|consen 320 HNLQVLELSGCQQFSDRG--FTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSS 397 (483)
T ss_pred CceEEEeccccchhhhhh--hhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcc
Confidence 678888888875 22111 0111 34567888888776542 1012222235788888888866432 211 1112
Q ss_pred cCCCCCcEEEeecCccC-ccchHHHhcCCCCcEEEccCC
Q 037844 83 KYLRSLKVLAIIKCNFC-SRITFLLRNLTQLIILHLSQN 120 (126)
Q Consensus 83 ~~l~~L~~l~l~~n~~~-~~~p~~l~~~~~L~~l~l~~n 120 (126)
..+..+..+.++.++.. +..-+.+..++.|+.+++..+
T Consensus 398 c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 398 CSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC 436 (483)
T ss_pred ccccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence 34567888888888754 344456667778888877654
No 82
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=68.72 E-value=3.1 Score=31.19 Aligned_cols=64 Identities=25% Similarity=0.013 Sum_probs=33.6
Q ss_pred CCceEEEEcCCCCcccccCCCccccccccCceeEeccC--cccCcchhhhhhC--CCCCCEEEcccCcCcC
Q 037844 10 RNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFN--KFSGFEILIKIIN--LSRLSYLNLFYSSLSG 76 (126)
Q Consensus 10 ~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n--~~~~~~~~~~~~~--l~~L~~l~l~~~~~~~ 76 (126)
.+.+..+++++|++-..-.....-...+.|..|+|++| .+. ....+.+ ...|+++.+.+|.+..
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~---~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKIS---SESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhc---chhhhhhhcCCCHHHeeecCCcccc
Confidence 36677777777776632100111122366777777777 332 1122222 2346677777776653
No 83
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=65.32 E-value=3.5 Score=30.92 Aligned_cols=64 Identities=14% Similarity=0.022 Sum_probs=27.4
Q ss_pred ccCceeEeccCcccCc-chhhhhhCCCCCCEEEcccCcCcCcCCccccC--CCCCcEEEeecCccCc
Q 037844 37 IHLKWLILLFNKFSGF-EILIKIINLSRLSYLNLFYSSLSGGLPVSTKY--LRSLKVLAIIKCNFCS 100 (126)
Q Consensus 37 ~~L~~L~l~~n~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~--l~~L~~l~l~~n~~~~ 100 (126)
+.+..+.+++|++-.- .+..-....|+|..|+|++|...-....++.+ ...|+.|.+.+|++..
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 4445555666655310 01111123456666666666111011112222 2345566666666654
No 84
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=62.80 E-value=6.2 Score=16.18 Aligned_cols=16 Identities=25% Similarity=0.177 Sum_probs=10.2
Q ss_pred CCCCcEEEccCCc-Cee
Q 037844 109 LTQLIILHLSQNS-FRG 124 (126)
Q Consensus 109 ~~~L~~l~l~~n~-i~~ 124 (126)
+++|+.|+++.+. |++
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 3567778877763 443
No 85
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=50.87 E-value=0.84 Score=33.56 Aligned_cols=114 Identities=24% Similarity=0.183 Sum_probs=57.4
Q ss_pred CceEEEEcCCCCcccc--cCCCcccc----ccccCceeEeccCcccCcc---hhhhhhCCCC-CCEEEcccCcCcCc---
Q 037844 11 NHVIKLDLPSSCLQDS--INSSSGLF----KLIHLKWLILLFNKFSGFE---ILIKIINLSR-LSYLNLFYSSLSGG--- 77 (126)
Q Consensus 11 ~~l~~L~ls~n~l~~~--~~~~~~~~----~l~~L~~L~l~~n~~~~~~---~~~~~~~l~~-L~~l~l~~~~~~~~--- 77 (126)
.+++.++++.|.+... ...+..+. ...+++.|.+..|.++... +...+...+. +..+++..|++.+.
T Consensus 172 ~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~ 251 (478)
T KOG4308|consen 172 EHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVE 251 (478)
T ss_pred cchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHH
Confidence 4556666666665311 00012222 3455666777666654111 1122333344 55566766666532
Q ss_pred -CCccccCC-CCCcEEEeecCccCccch----HHHhcCCCCcEEEccCCcCee
Q 037844 78 -LPVSTKYL-RSLKVLAIIKCNFCSRIT----FLLRNLTQLIILHLSQNSFRG 124 (126)
Q Consensus 78 -~~~~~~~l-~~L~~l~l~~n~~~~~~p----~~l~~~~~L~~l~l~~n~i~~ 124 (126)
..+.+..+ ..++.+++..|+++.... ..+..++.++.+.+..|.+.+
T Consensus 252 ~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 252 KLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 11223334 456777777777765333 334455567777777776643
No 86
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=48.16 E-value=15 Score=33.11 Aligned_cols=32 Identities=25% Similarity=0.028 Sum_probs=23.9
Q ss_pred EeccCcccCcchhhhhhCCCCCCEEEcccCcCc
Q 037844 43 ILLFNKFSGFEILIKIINLSRLSYLNLFYSSLS 75 (126)
Q Consensus 43 ~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~ 75 (126)
||++|+++ ..-+..|..+++|+.|+|.+|.+.
T Consensus 1 DLSnN~Ls-tLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKIS-TIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCC-ccChHHhccCCCceEEEeeCCccc
Confidence 47788887 233455667889999999998775
No 87
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=45.39 E-value=14 Score=33.32 Aligned_cols=32 Identities=19% Similarity=0.091 Sum_probs=23.4
Q ss_pred EcCCCCcccccCCCccccccccCceeEeccCccc
Q 037844 17 DLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFS 50 (126)
Q Consensus 17 ~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~ 50 (126)
+|++|+|...- +..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp--~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIE--EGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccC--hHHhccCCCceEEEeeCCccc
Confidence 47788888443 456677888888888888763
No 88
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=36.62 E-value=23 Score=14.95 Aligned_cols=15 Identities=33% Similarity=0.383 Sum_probs=11.1
Q ss_pred HHhcCCCCcEEEccC
Q 037844 105 LLRNLTQLIILHLSQ 119 (126)
Q Consensus 105 ~l~~~~~L~~l~l~~ 119 (126)
.+..+|+|+.||...
T Consensus 8 Vi~~LPqL~~LD~~~ 22 (26)
T smart00446 8 VIRLLPQLRKLDXXX 22 (26)
T ss_pred HHHHCCccceecccc
Confidence 456788898888654
Done!