Query 037844
Match_columns 126
No_of_seqs 117 out of 2462
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 07:48:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037844.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037844hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 99.8 5.7E-20 2E-24 123.6 9.9 120 3-125 40-164 (313)
2 2v70_A SLIT-2, SLIT homolog 2 99.8 3.5E-18 1.2E-22 109.8 10.6 113 9-124 55-167 (220)
3 1w8a_A SLIT protein; signaling 99.8 2.8E-18 9.6E-23 108.2 9.4 112 11-125 29-141 (192)
4 3rgz_A Protein brassinosteroid 99.8 3.4E-18 1.2E-22 126.6 10.5 90 36-126 631-720 (768)
5 2v9t_B SLIT homolog 2 protein 99.8 9.1E-18 3.1E-22 107.9 10.2 109 12-123 33-141 (220)
6 2v9t_B SLIT homolog 2 protein 99.7 1.2E-17 4E-22 107.4 10.3 113 9-124 54-166 (220)
7 3e6j_A Variable lymphocyte rec 99.7 1.6E-17 5.4E-22 107.3 10.5 110 11-124 40-149 (229)
8 1ogq_A PGIP-2, polygalacturona 99.7 4.1E-18 1.4E-22 114.6 7.9 114 9-125 74-189 (313)
9 4fcg_A Uncharacterized protein 99.7 1.1E-17 3.9E-22 113.1 9.5 112 10-126 182-293 (328)
10 2wfh_A SLIT homolog 2 protein 99.7 2.1E-17 7.3E-22 104.3 10.1 111 10-124 30-140 (193)
11 4eco_A Uncharacterized protein 99.7 1.2E-17 4.2E-22 121.5 10.1 118 2-124 73-288 (636)
12 3rfs_A Internalin B, repeat mo 99.7 4.4E-17 1.5E-21 107.5 11.7 89 34-123 130-218 (272)
13 2o6r_A Variable lymphocyte rec 99.7 3.2E-17 1.1E-21 101.9 10.4 113 10-125 27-139 (177)
14 3rgz_A Protein brassinosteroid 99.7 2.5E-17 8.5E-22 122.0 10.8 112 11-125 442-553 (768)
15 3m19_A Variable lymphocyte rec 99.7 4.1E-17 1.4E-21 106.5 10.6 109 11-122 59-167 (251)
16 2je0_A Acidic leucine-rich nuc 99.7 1.5E-17 5E-22 100.7 7.6 111 10-125 16-128 (149)
17 4ezg_A Putative uncharacterize 99.7 7.7E-17 2.6E-21 101.8 10.9 111 8-125 85-196 (197)
18 3m19_A Variable lymphocyte rec 99.7 5.7E-17 2E-21 105.8 10.5 114 9-125 81-194 (251)
19 3rfs_A Internalin B, repeat mo 99.7 1.2E-16 4E-21 105.5 11.6 116 7-125 81-196 (272)
20 2o6s_A Variable lymphocyte rec 99.7 9.9E-17 3.4E-21 101.9 10.8 109 12-123 29-137 (208)
21 2v70_A SLIT-2, SLIT homolog 2 99.7 5.3E-17 1.8E-21 104.3 9.5 113 11-125 32-144 (220)
22 2ell_A Acidic leucine-rich nuc 99.7 3.7E-17 1.3E-21 100.8 8.3 109 11-124 24-134 (168)
23 2o6s_A Variable lymphocyte rec 99.7 1E-16 3.6E-21 101.8 10.5 114 9-125 50-163 (208)
24 3g39_A Variable lymphocyte rec 99.7 9.2E-17 3.1E-21 99.5 9.7 107 12-124 10-116 (170)
25 3e6j_A Variable lymphocyte rec 99.7 9.9E-17 3.4E-21 103.6 10.2 112 9-124 62-173 (229)
26 3v47_A TOLL-like receptor 5B a 99.7 9.2E-17 3.1E-21 112.2 10.4 113 10-125 298-410 (455)
27 4g8a_A TOLL-like receptor 4; l 99.7 4.1E-17 1.4E-21 117.5 8.7 110 11-123 52-161 (635)
28 4ecn_A Leucine-rich repeat pro 99.7 7.1E-17 2.4E-21 120.9 9.6 120 2-124 315-530 (876)
29 2z66_A Variable lymphocyte rec 99.7 1.5E-16 5.1E-21 106.3 10.3 112 11-124 126-237 (306)
30 4fcg_A Uncharacterized protein 99.7 9.5E-17 3.3E-21 108.6 8.7 109 10-124 103-220 (328)
31 2r9u_A Variable lymphocyte rec 99.7 4.1E-16 1.4E-20 96.9 10.5 116 3-124 3-119 (174)
32 2z62_A TOLL-like receptor 4, v 99.7 4.4E-16 1.5E-20 102.7 11.2 112 10-124 51-163 (276)
33 1p9a_G Platelet glycoprotein I 99.7 3.2E-16 1.1E-20 104.5 10.6 109 11-123 77-185 (290)
34 4b8c_D Glucose-repressible alc 99.7 6.1E-17 2.1E-21 119.4 7.6 110 9-125 222-331 (727)
35 4g8a_A TOLL-like receptor 4; l 99.7 4.3E-16 1.5E-20 112.2 11.8 115 8-125 73-188 (635)
36 4ezg_A Putative uncharacterize 99.7 2.1E-16 7.1E-21 99.8 8.9 107 11-124 66-173 (197)
37 1ozn_A Reticulon 4 receptor; N 99.7 3.6E-16 1.2E-20 103.5 10.5 62 61-122 176-237 (285)
38 3vq2_A TLR4, TOLL-like recepto 99.7 4.1E-16 1.4E-20 112.4 11.5 113 9-124 54-167 (606)
39 1dce_A Protein (RAB geranylger 99.7 3.8E-16 1.3E-20 112.5 10.5 106 12-125 442-548 (567)
40 1ozn_A Reticulon 4 receptor; N 99.7 6.9E-16 2.4E-20 102.2 11.0 108 12-122 57-165 (285)
41 3v47_A TOLL-like receptor 5B a 99.7 2.6E-16 8.8E-21 110.0 9.4 111 11-124 275-385 (455)
42 2xot_A Amphoterin-induced prot 99.7 4.2E-16 1.4E-20 106.6 10.1 110 11-124 64-177 (361)
43 2xot_A Amphoterin-induced prot 99.7 3.9E-16 1.3E-20 106.8 9.5 111 11-124 39-150 (361)
44 2o6q_A Variable lymphocyte rec 99.7 8.4E-16 2.9E-20 101.2 10.6 63 60-122 131-193 (270)
45 2wfh_A SLIT homolog 2 protein 99.7 9.8E-16 3.4E-20 96.6 10.2 104 14-124 13-116 (193)
46 1w8a_A SLIT protein; signaling 99.7 6E-16 2.1E-20 97.4 9.2 106 14-125 11-117 (192)
47 4eco_A Uncharacterized protein 99.7 1.2E-16 4.1E-21 116.3 6.6 114 9-126 204-346 (636)
48 2o6q_A Variable lymphocyte rec 99.7 1.3E-15 4.5E-20 100.3 10.9 110 11-123 61-170 (270)
49 2z63_A TOLL-like receptor 4, v 99.7 6.5E-16 2.2E-20 110.4 10.0 115 9-125 419-533 (570)
50 3vq2_A TLR4, TOLL-like recepto 99.7 5.1E-16 1.7E-20 111.9 9.2 112 10-123 423-534 (606)
51 2z66_A Variable lymphocyte rec 99.7 5.6E-16 1.9E-20 103.5 8.8 113 9-124 148-262 (306)
52 2z62_A TOLL-like receptor 4, v 99.6 9.4E-16 3.2E-20 101.1 8.9 111 11-124 28-138 (276)
53 3oja_B Anopheles plasmodium-re 99.6 1.4E-15 4.6E-20 110.0 10.5 112 10-124 74-185 (597)
54 3o6n_A APL1; leucine-rich repe 99.6 1.9E-15 6.6E-20 104.0 10.4 112 10-124 68-179 (390)
55 3t6q_A CD180 antigen; protein- 99.6 9.4E-16 3.2E-20 110.5 9.1 111 11-124 33-143 (606)
56 1p9a_G Platelet glycoprotein I 99.6 2.5E-15 8.4E-20 100.2 10.4 111 9-123 98-208 (290)
57 3j0a_A TOLL-like receptor 5; m 99.6 1E-15 3.5E-20 114.3 9.1 92 32-124 68-162 (844)
58 2id5_A Lingo-1, leucine rich r 99.6 1.8E-15 6.2E-20 106.5 9.7 111 11-124 32-142 (477)
59 1wwl_A Monocyte differentiatio 99.6 8.8E-16 3E-20 103.1 7.5 110 10-123 94-214 (312)
60 2z63_A TOLL-like receptor 4, v 99.6 4.2E-15 1.4E-19 106.3 11.3 112 10-124 51-163 (570)
61 2id5_A Lingo-1, leucine rich r 99.6 2.2E-15 7.7E-20 106.0 9.6 112 9-123 54-165 (477)
62 1a9n_A U2A', U2A'; complex (nu 99.6 2.5E-15 8.4E-20 93.3 8.7 105 11-123 19-126 (176)
63 2z81_A CD282 antigen, TOLL-lik 99.6 1.1E-15 3.6E-20 109.1 7.3 111 11-124 50-162 (549)
64 2ell_A Acidic leucine-rich nuc 99.6 3.9E-15 1.3E-19 91.6 8.9 111 9-124 47-161 (168)
65 2z7x_B TOLL-like receptor 1, v 99.6 1.6E-15 5.3E-20 107.7 7.7 108 11-124 21-129 (520)
66 3t6q_A CD180 antigen; protein- 99.6 5.7E-15 2E-19 106.4 9.9 113 9-124 55-167 (606)
67 2je0_A Acidic leucine-rich nuc 99.6 4.4E-15 1.5E-19 89.7 7.9 107 8-119 39-149 (149)
68 2z81_A CD282 antigen, TOLL-lik 99.6 5.8E-15 2E-19 105.3 9.7 110 11-123 26-136 (549)
69 1ziw_A TOLL-like receptor 3; i 99.6 3.8E-15 1.3E-19 108.7 8.8 110 11-123 25-134 (680)
70 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 5E-15 1.7E-19 106.2 9.2 108 11-124 52-160 (562)
71 1ziw_A TOLL-like receptor 3; i 99.6 5.6E-15 1.9E-19 107.8 9.4 114 9-125 47-160 (680)
72 2z80_A TOLL-like receptor 2, v 99.6 9.8E-15 3.3E-19 99.3 9.7 111 11-124 76-188 (353)
73 3oja_A Leucine-rich immune mol 99.6 9.4E-15 3.2E-19 103.5 9.9 109 10-124 119-228 (487)
74 3zyi_A Leucine-rich repeat-con 99.6 8.5E-15 2.9E-19 102.6 9.5 106 11-119 75-180 (452)
75 2z7x_B TOLL-like receptor 1, v 99.6 1.7E-14 5.8E-19 102.4 11.0 113 8-123 321-457 (520)
76 1xku_A Decorin; proteoglycan, 99.6 1.5E-14 5E-19 97.6 9.8 86 37-124 192-277 (330)
77 1a9n_A U2A', U2A'; complex (nu 99.6 6.1E-15 2.1E-19 91.5 7.2 105 11-123 42-153 (176)
78 1h6t_A Internalin B; cell adhe 99.6 3.5E-14 1.2E-18 94.6 11.1 102 11-123 68-169 (291)
79 3zyj_A Leucine-rich repeat-con 99.6 1.9E-14 6.3E-19 100.6 10.1 106 11-119 64-169 (440)
80 4ecn_A Leucine-rich repeat pro 99.6 2.9E-15 1E-19 112.3 6.2 111 9-123 446-586 (876)
81 3j0a_A TOLL-like receptor 5; m 99.6 2.1E-14 7.2E-19 107.3 10.7 114 9-124 22-137 (844)
82 3zyj_A Leucine-rich repeat-con 99.6 1.6E-14 5.4E-19 101.0 9.2 109 10-123 184-292 (440)
83 2xwt_C Thyrotropin receptor; s 99.6 1.4E-14 4.8E-19 93.7 8.1 85 12-99 32-118 (239)
84 1xeu_A Internalin C; cellular 99.6 3.6E-14 1.2E-18 93.4 10.1 102 11-124 63-164 (263)
85 2z80_A TOLL-like receptor 2, v 99.6 1E-14 3.5E-19 99.3 7.7 109 11-123 52-163 (353)
86 2ft3_A Biglycan; proteoglycan, 99.6 3.7E-14 1.3E-18 95.8 10.4 107 11-123 54-160 (332)
87 2o6r_A Variable lymphocyte rec 99.6 4.4E-14 1.5E-18 87.6 9.9 106 13-124 9-114 (177)
88 1h6u_A Internalin H; cell adhe 99.6 6.2E-14 2.1E-18 94.1 11.3 84 33-123 125-208 (308)
89 1h6t_A Internalin B; cell adhe 99.6 7.4E-14 2.5E-18 93.0 11.4 105 9-124 88-192 (291)
90 4fmz_A Internalin; leucine ric 99.6 7.6E-14 2.6E-18 94.5 11.5 107 9-124 219-325 (347)
91 1xku_A Decorin; proteoglycan, 99.5 6.5E-14 2.2E-18 94.4 11.1 107 11-123 52-158 (330)
92 3zyi_A Leucine-rich repeat-con 99.5 3.4E-14 1.2E-18 99.6 9.9 112 9-123 97-209 (452)
93 3o6n_A APL1; leucine-rich repe 99.5 1.5E-14 5.2E-19 99.5 7.7 113 10-125 44-156 (390)
94 3o53_A Protein LRIM1, AGAP0063 99.5 4.2E-14 1.4E-18 95.1 9.5 106 11-123 144-250 (317)
95 2ifg_A High affinity nerve gro 99.5 4.2E-14 1.4E-18 96.0 9.5 104 14-123 11-116 (347)
96 4fmz_A Internalin; leucine ric 99.5 4E-14 1.4E-18 95.9 9.3 107 8-123 240-346 (347)
97 1wwl_A Monocyte differentiatio 99.5 9.3E-15 3.2E-19 98.1 6.1 111 10-124 120-242 (312)
98 1h6u_A Internalin H; cell adhe 99.5 9E-14 3.1E-18 93.3 10.9 101 11-122 63-163 (308)
99 2xwt_C Thyrotropin receptor; s 99.5 2.8E-14 9.4E-19 92.4 8.1 110 9-123 53-169 (239)
100 3a79_B TLR6, VLRB.59, TOLL-lik 99.5 8.2E-14 2.8E-18 99.9 11.0 113 8-123 350-486 (562)
101 1dce_A Protein (RAB geranylger 99.5 7.5E-14 2.6E-18 100.6 10.7 104 8-117 460-567 (567)
102 3oja_B Anopheles plasmodium-re 99.5 2.5E-14 8.5E-19 103.4 8.3 112 11-125 51-162 (597)
103 1xeu_A Internalin C; cellular 99.5 8.1E-14 2.8E-18 91.6 9.6 104 9-124 39-142 (263)
104 2ft3_A Biglycan; proteoglycan, 99.5 2.3E-14 7.8E-19 96.8 6.7 85 38-124 194-278 (332)
105 3o53_A Protein LRIM1, AGAP0063 99.5 4E-14 1.4E-18 95.2 7.7 109 10-124 119-228 (317)
106 4glp_A Monocyte differentiatio 99.5 2.7E-14 9.2E-19 95.7 6.8 110 10-124 168-286 (310)
107 1m9s_A Internalin B; cell inva 99.5 1.8E-13 6.3E-18 99.2 11.6 62 58-123 127-188 (605)
108 4glp_A Monocyte differentiatio 99.5 4.8E-14 1.7E-18 94.5 7.3 86 11-99 91-182 (310)
109 1m9s_A Internalin B; cell inva 99.5 1.9E-13 6.5E-18 99.2 10.6 106 9-125 63-168 (605)
110 3oja_A Leucine-rich immune mol 99.5 6.9E-14 2.4E-18 99.1 7.7 107 10-123 143-250 (487)
111 3g39_A Variable lymphocyte rec 99.5 1.7E-13 5.8E-18 84.7 8.3 89 10-101 29-117 (170)
112 2r9u_A Variable lymphocyte rec 99.5 3.3E-13 1.1E-17 83.8 8.3 89 10-101 32-120 (174)
113 1o6v_A Internalin A; bacterial 99.5 6.8E-13 2.3E-17 93.3 10.8 61 60-124 307-367 (466)
114 1o6v_A Internalin A; bacterial 99.5 6.8E-13 2.3E-17 93.3 10.7 105 9-124 285-389 (466)
115 1ds9_A Outer arm dynein; leuci 99.4 1.8E-15 6.1E-20 95.6 -2.6 107 10-124 47-154 (198)
116 2ast_B S-phase kinase-associat 99.4 3.1E-14 1.1E-18 96.0 3.1 107 11-120 93-205 (336)
117 4b8c_D Glucose-repressible alc 99.4 1.5E-13 5E-18 101.6 6.7 90 30-123 217-306 (727)
118 2ca6_A RAN GTPase-activating p 99.4 1.5E-13 5.1E-18 94.5 5.7 113 11-125 187-318 (386)
119 2ast_B S-phase kinase-associat 99.4 1.6E-13 5.4E-18 92.5 5.3 111 11-124 70-183 (336)
120 3bz5_A Internalin-J, INLJ; leu 99.4 2.1E-12 7.2E-17 90.9 9.6 101 10-124 41-141 (457)
121 3cvr_A Invasion plasmid antige 99.4 1.3E-12 4.5E-17 94.2 8.5 99 11-125 140-245 (571)
122 2ca6_A RAN GTPase-activating p 99.4 2.3E-13 7.9E-18 93.6 4.1 40 83-122 213-256 (386)
123 3goz_A Leucine-rich repeat-con 99.4 3.5E-13 1.2E-17 92.1 4.9 109 12-123 23-151 (362)
124 1ds9_A Outer arm dynein; leuci 99.4 5.9E-15 2E-19 93.2 -4.0 106 11-124 18-129 (198)
125 3bz5_A Internalin-J, INLJ; leu 99.4 6.4E-12 2.2E-16 88.4 10.1 97 9-120 62-158 (457)
126 3g06_A SSPH2 (leucine-rich rep 99.3 9.7E-12 3.3E-16 90.5 10.0 79 37-125 221-299 (622)
127 1z7x_W Ribonuclease inhibitor; 99.3 6.6E-13 2.3E-17 92.8 2.7 87 38-124 314-412 (461)
128 3cvr_A Invasion plasmid antige 99.3 2.2E-11 7.5E-16 87.9 9.5 54 11-75 80-133 (571)
129 3goz_A Leucine-rich repeat-con 99.3 3.4E-12 1.2E-16 87.2 5.1 108 15-125 2-124 (362)
130 2ifg_A High affinity nerve gro 99.3 2.8E-11 9.5E-16 82.1 9.0 86 11-100 31-117 (347)
131 4ay9_X Follicle-stimulating ho 99.2 2.7E-11 9.3E-16 82.4 7.1 87 11-100 30-118 (350)
132 1z7x_W Ribonuclease inhibitor; 99.2 2.9E-12 9.9E-17 89.6 2.3 62 63-124 314-384 (461)
133 1jl5_A Outer protein YOPM; leu 99.2 1E-10 3.5E-15 82.3 10.0 101 11-124 131-251 (454)
134 3un9_A NLR family member X1; l 99.2 1.5E-11 5.1E-16 84.6 4.9 88 37-124 155-253 (372)
135 1jl5_A Outer protein YOPM; leu 99.2 1.1E-10 3.9E-15 82.1 8.9 79 37-124 131-209 (454)
136 3g06_A SSPH2 (leucine-rich rep 99.1 2.5E-10 8.6E-15 83.2 8.4 54 11-75 61-114 (622)
137 4ay9_X Follicle-stimulating ho 99.1 1.6E-10 5.6E-15 78.6 6.9 104 14-124 12-118 (350)
138 3un9_A NLR family member X1; l 99.1 4.7E-11 1.6E-15 82.1 2.9 111 11-124 101-225 (372)
139 1io0_A Tropomodulin; LRR prote 99.0 3.5E-10 1.2E-14 70.7 4.2 112 10-123 35-164 (185)
140 3sb4_A Hypothetical leucine ri 98.9 4.5E-09 1.6E-13 70.8 7.8 103 10-117 225-328 (329)
141 3ogk_B Coronatine-insensitive 98.9 2.4E-10 8.4E-15 82.1 1.3 113 10-124 111-234 (592)
142 3ogk_B Coronatine-insensitive 98.8 9E-09 3.1E-13 73.9 6.5 35 84-118 291-326 (592)
143 3rw6_A Nuclear RNA export fact 98.8 1.4E-08 4.9E-13 66.9 6.8 80 35-116 168-257 (267)
144 2p1m_B Transport inhibitor res 98.8 5.2E-09 1.8E-13 75.2 4.2 109 10-120 104-221 (594)
145 2p1m_B Transport inhibitor res 98.7 4E-09 1.4E-13 75.8 1.6 86 36-123 431-519 (594)
146 3e4g_A ATP synthase subunit S, 98.7 2.4E-08 8.3E-13 61.9 4.9 82 38-120 62-149 (176)
147 3sb4_A Hypothetical leucine ri 98.7 1.7E-07 5.9E-12 63.1 9.3 85 36-123 225-310 (329)
148 3rw6_A Nuclear RNA export fact 98.7 3.9E-08 1.3E-12 64.8 5.4 78 10-92 169-257 (267)
149 3e4g_A ATP synthase subunit S, 98.6 2.6E-08 9E-13 61.7 4.2 86 11-99 61-153 (176)
150 2ra8_A Uncharacterized protein 98.5 2.7E-08 9.1E-13 68.3 1.8 110 9-124 170-293 (362)
151 1io0_A Tropomodulin; LRR prote 98.5 1.9E-07 6.4E-12 58.2 4.4 93 32-124 31-137 (185)
152 2ra8_A Uncharacterized protein 98.4 9.5E-07 3.3E-11 60.6 8.1 113 10-124 192-321 (362)
153 4fdw_A Leucine rich hypothetic 98.0 4.4E-05 1.5E-09 53.0 8.3 90 30-122 264-357 (401)
154 1pgv_A TMD-1, tropomodulin TMD 98.0 5.5E-06 1.9E-10 52.2 3.3 109 11-122 41-169 (197)
155 4fdw_A Leucine rich hypothetic 97.9 8.5E-05 2.9E-09 51.5 9.1 15 57-71 221-235 (401)
156 4gt6_A Cell surface protein; l 97.5 0.0014 4.7E-08 45.1 10.4 104 11-121 265-368 (394)
157 1pgv_A TMD-1, tropomodulin TMD 97.4 0.00015 5.2E-09 45.6 4.2 87 34-120 38-136 (197)
158 3rfe_A Platelet glycoprotein I 97.4 0.00069 2.4E-08 39.7 6.1 58 40-99 11-68 (130)
159 4h09_A Hypothetical leucine ri 97.2 0.0021 7E-08 43.8 8.2 84 32-118 258-341 (379)
160 4gt6_A Cell surface protein; l 97.1 0.0022 7.5E-08 44.1 7.7 106 9-123 286-391 (394)
161 4fs7_A Uncharacterized protein 97.0 0.0034 1.2E-07 43.1 7.7 84 33-120 293-376 (394)
162 3rfe_A Platelet glycoprotein I 97.0 0.0018 6.1E-08 37.9 5.5 57 14-75 11-68 (130)
163 4fs7_A Uncharacterized protein 96.9 0.004 1.4E-07 42.8 6.9 99 9-115 295-393 (394)
164 4h09_A Hypothetical leucine ri 96.4 0.046 1.6E-06 37.1 9.8 103 12-120 218-320 (379)
165 2lz0_A Uncharacterized protein 44.3 34 0.0012 18.5 3.6 40 31-72 14-53 (100)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.82 E-value=5.7e-20 Score=123.62 Aligned_cols=120 Identities=23% Similarity=0.296 Sum_probs=103.8
Q ss_pred CccccCCC--CceEEEEcCCCCccc--ccCCCccccccccCceeEecc-CcccCcchhhhhhCCCCCCEEEcccCcCcCc
Q 037844 3 DQAEKKQR--NHVIKLDLPSSCLQD--SINSSSGLFKLIHLKWLILLF-NKFSGFEILIKIINLSRLSYLNLFYSSLSGG 77 (126)
Q Consensus 3 ~~~~~~~~--~~l~~L~ls~n~l~~--~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~ 77 (126)
||.|.... .+++.|++++|.+.+ .. |..+..+++|++|++++ |.+.+ .+|..+..+++|+++++++|.+++.
T Consensus 40 gv~C~~~~~~~~l~~L~L~~~~l~~~~~~--~~~l~~l~~L~~L~L~~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~ 116 (313)
T 1ogq_A 40 GVLCDTDTQTYRVNNLDLSGLNLPKPYPI--PSSLANLPYLNFLYIGGINNLVG-PIPPAIAKLTQLHYLYITHTNVSGA 116 (313)
T ss_dssp TEEECCSSSCCCEEEEEEECCCCSSCEEC--CGGGGGCTTCSEEEEEEETTEES-CCCGGGGGCTTCSEEEEEEECCEEE
T ss_pred ceEeCCCCCCceEEEEECCCCCccCCccc--ChhHhCCCCCCeeeCCCCCcccc-cCChhHhcCCCCCEEECcCCeeCCc
Confidence 67786543 789999999999987 77 78899999999999995 88874 6788888999999999999999878
Q ss_pred CCccccCCCCCcEEEeecCccCccchHHHhcCCCCcEEEccCCcCeec
Q 037844 78 LPVSTKYLRSLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRGR 125 (126)
Q Consensus 78 ~~~~~~~l~~L~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~~ 125 (126)
.|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.++|.
T Consensus 117 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 164 (313)
T 1ogq_A 117 IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA 164 (313)
T ss_dssp CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEE
T ss_pred CCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCc
Confidence 888888899999999999999888888888889999999999988764
No 2
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.77 E-value=3.5e-18 Score=109.84 Aligned_cols=113 Identities=16% Similarity=0.110 Sum_probs=82.6
Q ss_pred CCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCC
Q 037844 9 QRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSL 88 (126)
Q Consensus 9 ~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L 88 (126)
..++|++|++++|.+++.. +..+..+++|++|++++|.+++ ..+..+..+++|+++++++|.+++..|..+..+++|
T Consensus 55 ~l~~L~~L~L~~N~i~~i~--~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 131 (220)
T 2v70_A 55 KLPQLRKINFSNNKITDIE--EGAFEGASGVNEILLTSNRLEN-VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSV 131 (220)
T ss_dssp GCTTCCEEECCSSCCCEEC--TTTTTTCTTCCEEECCSSCCCC-CCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTC
T ss_pred cCCCCCEEECCCCcCCEEC--HHHhCCCCCCCEEECCCCccCc-cCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccC
Confidence 3456777777777777554 4567777777777777777762 445556777788888888887776666777777888
Q ss_pred cEEEeecCccCccchHHHhcCCCCcEEEccCCcCee
Q 037844 89 KVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRG 124 (126)
Q Consensus 89 ~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~ 124 (126)
+.|++++|.+++..|..+..+++|+.+++++|++++
T Consensus 132 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 132 RLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp SEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred CEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 888888888876667777777888888888887764
No 3
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.77 E-value=2.8e-18 Score=108.17 Aligned_cols=112 Identities=22% Similarity=0.122 Sum_probs=99.9
Q ss_pred CceEEEEcCCCCcccccCCCc-cccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCc
Q 037844 11 NHVIKLDLPSSCLQDSINSSS-GLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLK 89 (126)
Q Consensus 11 ~~l~~L~ls~n~l~~~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~ 89 (126)
.++++|++++|.+.... +. .+..+++|++|++++|.+++ ..|..+..+++|+++++++|++++..+..+..+++|+
T Consensus 29 ~~l~~L~l~~n~i~~~~--~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 105 (192)
T 1w8a_A 29 LHTTELLLNDNELGRIS--SDGLFGRLPHLVKLELKRNQLTG-IEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLK 105 (192)
T ss_dssp TTCSEEECCSCCCCSBC--CSCSGGGCTTCCEEECCSSCCCC-BCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCC
T ss_pred CCCCEEECCCCcCCccC--CccccccCCCCCEEECCCCCCCC-cCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCC
Confidence 48999999999998554 33 37889999999999999984 6678899999999999999999987777789999999
Q ss_pred EEEeecCccCccchHHHhcCCCCcEEEccCCcCeec
Q 037844 90 VLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRGR 125 (126)
Q Consensus 90 ~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~~ 125 (126)
.|++++|++++..|..+..+++|+++++++|++++.
T Consensus 106 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 106 TLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp EEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred EEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 999999999988898999999999999999998764
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.76 E-value=3.4e-18 Score=126.57 Aligned_cols=90 Identities=30% Similarity=0.365 Sum_probs=69.4
Q ss_pred cccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcEEEeecCccCccchHHHhcCCCCcEE
Q 037844 36 LIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKVLAIIKCNFCSRITFLLRNLTQLIIL 115 (126)
Q Consensus 36 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~l~~~~~L~~l 115 (126)
++.|++|++++|.++| .+|..++.++.|+.+++++|.+++.+|..++.++.|+.|++++|++++.+|..+..+++|+++
T Consensus 631 l~~L~~LdLs~N~l~g-~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 709 (768)
T 3rgz_A 631 NGSMMFLDMSYNMLSG-YIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI 709 (768)
T ss_dssp SBCCCEEECCSSCCBS-CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEE
T ss_pred cccccEEECcCCcccc-cCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEE
Confidence 4556667777777764 567777777888888888888877778778888888888888888888888888888888888
Q ss_pred EccCCcCeecC
Q 037844 116 HLSQNSFRGRI 126 (126)
Q Consensus 116 ~l~~n~i~~~~ 126 (126)
++++|+++|.|
T Consensus 710 ~ls~N~l~g~i 720 (768)
T 3rgz_A 710 DLSNNNLSGPI 720 (768)
T ss_dssp ECCSSEEEEEC
T ss_pred ECcCCcccccC
Confidence 88888887764
No 5
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.75 E-value=9.1e-18 Score=107.90 Aligned_cols=109 Identities=17% Similarity=0.106 Sum_probs=58.5
Q ss_pred ceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcEE
Q 037844 12 HVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKVL 91 (126)
Q Consensus 12 ~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l 91 (126)
++++|++++|.+.... +..+..+++|++|++++|.++ ...|..+..+++|++|++++|.++...+..+..+++|+.|
T Consensus 33 ~l~~L~l~~n~i~~i~--~~~~~~l~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L 109 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIP--PGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLL 109 (220)
T ss_dssp TCCEEECCSSCCCEEC--TTSSTTCTTCCEEECCSSCCC-EECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCEEECCCCcCCCcC--HhHhhCCCCCCEEECCCCcCC-CcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEE
Confidence 4566666666655433 334555556666666666555 2334555555556666665555553323334455555555
Q ss_pred EeecCccCccchHHHhcCCCCcEEEccCCcCe
Q 037844 92 AIIKCNFCSRITFLLRNLTQLIILHLSQNSFR 123 (126)
Q Consensus 92 ~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~ 123 (126)
++++|.+.+..|..+..+++|++|++++|.++
T Consensus 110 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 141 (220)
T 2v9t_B 110 LLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ 141 (220)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred ECCCCCCCEeCHHHcCCCCCCCEEECCCCcCC
Confidence 55555555444445555555555555555544
No 6
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.75 E-value=1.2e-17 Score=107.37 Aligned_cols=113 Identities=19% Similarity=0.148 Sum_probs=100.0
Q ss_pred CCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCC
Q 037844 9 QRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSL 88 (126)
Q Consensus 9 ~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L 88 (126)
..++|++|++++|++.... |..+..+++|++|++++|.++ ...+..+..+++|+.+++++|.+++..+..+..+++|
T Consensus 54 ~l~~L~~L~Ls~N~i~~~~--~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 130 (220)
T 2v9t_B 54 PYKKLRRIDLSNNQISELA--PDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNL 130 (220)
T ss_dssp TCTTCCEEECCSSCCCEEC--TTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCCCCEEECCCCcCCCcC--HHHhhCCcCCCEEECCCCcCC-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCC
Confidence 4578999999999999777 788999999999999999998 2334446789999999999999998878889999999
Q ss_pred cEEEeecCccCccchHHHhcCCCCcEEEccCCcCee
Q 037844 89 KVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRG 124 (126)
Q Consensus 89 ~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~ 124 (126)
+.|++++|.+++..+..+..+++|+.+++++|++..
T Consensus 131 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 131 NLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 999999999997777778899999999999998753
No 7
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.75 E-value=1.6e-17 Score=107.33 Aligned_cols=110 Identities=23% Similarity=0.132 Sum_probs=69.6
Q ss_pred CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcE
Q 037844 11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKV 90 (126)
Q Consensus 11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~ 90 (126)
+++++|++++|.+.+.. +..+..+++|++|++++|.+. ...+..+..+++|+.+++++|.+++..+..+..+++|+.
T Consensus 40 ~~L~~L~Ls~n~i~~~~--~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~ 116 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLE--PGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKE 116 (229)
T ss_dssp TTCSEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCEEEcCCCccCccC--HHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCe
Confidence 46677777777777555 556666777777777777765 222334556677777777777666444444566666666
Q ss_pred EEeecCccCccchHHHhcCCCCcEEEccCCcCee
Q 037844 91 LAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRG 124 (126)
Q Consensus 91 l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~ 124 (126)
|++++|.+. .+|..+..+++|++|++++|.+++
T Consensus 117 L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~ 149 (229)
T 3e6j_A 117 LFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKS 149 (229)
T ss_dssp EECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCC
T ss_pred EeccCCccc-ccCcccccCCCCCEEECCCCcCCc
Confidence 666666666 556666666666666666666553
No 8
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.74 E-value=4.1e-18 Score=114.56 Aligned_cols=114 Identities=22% Similarity=0.277 Sum_probs=91.7
Q ss_pred CCCceEEEEcCC-CCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCC
Q 037844 9 QRNHVIKLDLPS-SCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRS 87 (126)
Q Consensus 9 ~~~~l~~L~ls~-n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~ 87 (126)
..+++++|++++ |.+.+.. |..+..+++|++|++++|.+.+ ..|..+..+++|+++++++|.+++..|..+..+++
T Consensus 74 ~l~~L~~L~L~~~n~l~~~~--p~~l~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 150 (313)
T 1ogq_A 74 NLPYLNFLYIGGINNLVGPI--PPAIAKLTQLHYLYITHTNVSG-AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150 (313)
T ss_dssp GCTTCSEEEEEEETTEESCC--CGGGGGCTTCSEEEEEEECCEE-ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTT
T ss_pred CCCCCCeeeCCCCCcccccC--ChhHhcCCCCCEEECcCCeeCC-cCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCC
Confidence 446788888884 7777777 7778888888888888888873 67777888888888888888888777888888888
Q ss_pred CcEEEeecCccCccchHHHhcCC-CCcEEEccCCcCeec
Q 037844 88 LKVLAIIKCNFCSRITFLLRNLT-QLIILHLSQNSFRGR 125 (126)
Q Consensus 88 L~~l~l~~n~~~~~~p~~l~~~~-~L~~l~l~~n~i~~~ 125 (126)
|++|++++|.+++.+|..+..++ +|+++++++|.++|.
T Consensus 151 L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~ 189 (313)
T 1ogq_A 151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK 189 (313)
T ss_dssp CCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEE
T ss_pred CCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeecc
Confidence 88888888888878888888777 788888888887754
No 9
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.74 E-value=1.1e-17 Score=113.14 Aligned_cols=112 Identities=22% Similarity=0.183 Sum_probs=95.3
Q ss_pred CCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCc
Q 037844 10 RNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLK 89 (126)
Q Consensus 10 ~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~ 89 (126)
.+++++|++++|.++ .+ |..+..+++|++|++++|.++ .+|..+..+++|+++++++|.+.+..|..++.+++|+
T Consensus 182 l~~L~~L~L~~n~l~-~l--p~~l~~l~~L~~L~L~~N~l~--~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~ 256 (328)
T 4fcg_A 182 LVNLQSLRLEWTGIR-SL--PASIANLQNLKSLKIRNSPLS--ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLK 256 (328)
T ss_dssp STTCCEEEEEEECCC-CC--CGGGGGCTTCCEEEEESSCCC--CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCC
T ss_pred CCCCCEEECcCCCcC-cc--hHhhcCCCCCCEEEccCCCCC--cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCC
Confidence 567888888888887 66 777888888999999999887 3666788889999999999888888888888899999
Q ss_pred EEEeecCccCccchHHHhcCCCCcEEEccCCcCeecC
Q 037844 90 VLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRGRI 126 (126)
Q Consensus 90 ~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~~~ 126 (126)
.|++++|.+.+.+|..+..+++|++|++++|++.+.+
T Consensus 257 ~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~i 293 (328)
T 4fcg_A 257 RLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL 293 (328)
T ss_dssp EEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCC
T ss_pred EEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhc
Confidence 9999998888888888888999999999998887754
No 10
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.74 E-value=2.1e-17 Score=104.30 Aligned_cols=111 Identities=22% Similarity=0.188 Sum_probs=96.7
Q ss_pred CCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCc
Q 037844 10 RNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLK 89 (126)
Q Consensus 10 ~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~ 89 (126)
.+++++|++++|.++ .+ |..+..+++|++|++++|.+++ ..+..+..+++|+.|++++|++++..+..+..+++|+
T Consensus 30 ~~~l~~L~L~~n~i~-~i--p~~~~~l~~L~~L~Ls~N~i~~-i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~ 105 (193)
T 2wfh_A 30 PRDVTELYLDGNQFT-LV--PKELSNYKHLTLIDLSNNRIST-LSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105 (193)
T ss_dssp CTTCCEEECCSSCCC-SC--CGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCC
T ss_pred CCCCCEEECCCCcCc-hh--HHHhhcccCCCEEECCCCcCCE-eCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCC
Confidence 357999999999998 66 7788999999999999999983 5566788999999999999999977777899999999
Q ss_pred EEEeecCccCccchHHHhcCCCCcEEEccCCcCee
Q 037844 90 VLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRG 124 (126)
Q Consensus 90 ~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~ 124 (126)
.|++++|.++...+..+..+++|+.+++++|++..
T Consensus 106 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 106 LLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp EEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred EEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 99999999995555568889999999999998753
No 11
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.74 E-value=1.2e-17 Score=121.45 Aligned_cols=118 Identities=15% Similarity=0.221 Sum_probs=107.0
Q ss_pred CCccccCCCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcc--------------------------------
Q 037844 2 SDQAEKKQRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKF-------------------------------- 49 (126)
Q Consensus 2 ~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~-------------------------------- 49 (126)
.||.|+.. .+|+.|+++++.+.+.+ |+++..+++|++|++++|.+
T Consensus 73 ~GV~C~~~-~~V~~L~L~~~~l~g~l--p~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~ 149 (636)
T 4eco_A 73 PGVSLNSN-GRVTGLSLEGFGASGRV--PDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTF 149 (636)
T ss_dssp TTEEECTT-CCEEEEECTTSCCEEEE--CGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHH
T ss_pred CCeEEcCC-CCEEEEEecCcccCCcC--ChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhh
Confidence 48899765 79999999999999999 89999999999999998843
Q ss_pred ----------------------------------------------cCcchhhhhhCCCCCCEEEcccCcCcCc------
Q 037844 50 ----------------------------------------------SGFEILIKIINLSRLSYLNLFYSSLSGG------ 77 (126)
Q Consensus 50 ----------------------------------------------~~~~~~~~~~~l~~L~~l~l~~~~~~~~------ 77 (126)
+ .+|..++.+++|+++++++|.+++.
T Consensus 150 l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~--~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 227 (636)
T 4eco_A 150 VDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT--FVSKAVMRLTKLRQFYMGNSPFVAENICEAW 227 (636)
T ss_dssp TCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEE--EECGGGGGCTTCCEEEEESCCCCGGGBSSSC
T ss_pred hccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCc--cCCHHHhcccCCCEEECcCCccccccccccc
Confidence 2 2677889999999999999999875
Q ss_pred -----------CCcccc--CCCCCcEEEeecCccCccchHHHhcCCCCcEEEccCCc-Cee
Q 037844 78 -----------LPVSTK--YLRSLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNS-FRG 124 (126)
Q Consensus 78 -----------~~~~~~--~l~~L~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~-i~~ 124 (126)
+|..++ .+++|++|++++|.+.+.+|..++++++|++|++++|. ++|
T Consensus 228 ~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~ 288 (636)
T 4eco_A 228 ENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISG 288 (636)
T ss_dssp SCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCH
T ss_pred cccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCcc
Confidence 899988 99999999999999999999999999999999999998 887
No 12
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.74 E-value=4.4e-17 Score=107.52 Aligned_cols=89 Identities=25% Similarity=0.203 Sum_probs=37.8
Q ss_pred cccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcEEEeecCccCccchHHHhcCCCCc
Q 037844 34 FKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKVLAIIKCNFCSRITFLLRNLTQLI 113 (126)
Q Consensus 34 ~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~l~~~~~L~ 113 (126)
..+++|++|++++|.+++ ..+..+..+++|+.+++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|+
T Consensus 130 ~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 208 (272)
T 3rfs_A 130 DKLTNLTYLNLAHNQLQS-LPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ 208 (272)
T ss_dssp TTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred ccCCCCCEEECCCCccCc-cCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCC
Confidence 334444444444444431 2222233444444444444444433333334444444444444444433333344444455
Q ss_pred EEEccCCcCe
Q 037844 114 ILHLSQNSFR 123 (126)
Q Consensus 114 ~l~l~~n~i~ 123 (126)
++++++|++.
T Consensus 209 ~L~l~~N~~~ 218 (272)
T 3rfs_A 209 YIWLHDNPWD 218 (272)
T ss_dssp EEECCSSCBC
T ss_pred EEEccCCCcc
Confidence 5555544443
No 13
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.74 E-value=3.2e-17 Score=101.91 Aligned_cols=113 Identities=24% Similarity=0.130 Sum_probs=95.8
Q ss_pred CCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCc
Q 037844 10 RNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLK 89 (126)
Q Consensus 10 ~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~ 89 (126)
.+++++|++++|++.+.. +..+..+++|++|++++|.+++ ..+..+..+++|+.+++++|.+++..+..+..+++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~ 103 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLP--HGVFDKLTQLTKLSLSQNQIQS-LPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLK 103 (177)
T ss_dssp CTTCSEEECCSSCCCCCC--TTTTTTCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCCcEEEeCCCcccEeC--HHHhcCcccccEEECCCCcceE-eChhHccCCCccCEEECCCCCccccCHHHhhCCcccC
Confidence 368999999999998554 5567889999999999999983 4445578899999999999999866666678999999
Q ss_pred EEEeecCccCccchHHHhcCCCCcEEEccCCcCeec
Q 037844 90 VLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRGR 125 (126)
Q Consensus 90 ~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~~ 125 (126)
.+++++|.+++..+..+..+++|+++++++|++++.
T Consensus 104 ~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 104 ELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred EEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 999999999955555568899999999999998763
No 14
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.73 E-value=2.5e-17 Score=121.96 Aligned_cols=112 Identities=29% Similarity=0.413 Sum_probs=68.0
Q ss_pred CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcE
Q 037844 11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKV 90 (126)
Q Consensus 11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~ 90 (126)
++++.|++++|.+.+.. |..+..+++|++|++++|.+.+ ..|..+..+++|+++++++|++.+..|..++.+++|+.
T Consensus 442 ~~L~~L~L~~n~l~~~~--p~~~~~l~~L~~L~L~~N~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 518 (768)
T 3rgz_A 442 SKLRDLKLWLNMLEGEI--PQELMYVKTLETLILDFNDLTG-EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAI 518 (768)
T ss_dssp TTCCEEECCSSCCCSCC--CGGGGGCTTCCEEECCSSCCCS-CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred CCCCEEECCCCcccCcC--CHHHcCCCCceEEEecCCcccC-cCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCE
Confidence 44555555555555555 5555555566666666666553 45555666666666666666666566666666666666
Q ss_pred EEeecCccCccchHHHhcCCCCcEEEccCCcCeec
Q 037844 91 LAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRGR 125 (126)
Q Consensus 91 l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~~ 125 (126)
|++++|++.+.+|..+..+++|+++++++|+++|.
T Consensus 519 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ 553 (768)
T 3rgz_A 519 LKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT 553 (768)
T ss_dssp EECCSSCCEEECCGGGGGCTTCCEEECCSSEEESB
T ss_pred EECCCCcccCcCCHHHcCCCCCCEEECCCCccCCc
Confidence 66666666666666666666666666666666654
No 15
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.73 E-value=4.1e-17 Score=106.49 Aligned_cols=109 Identities=25% Similarity=0.106 Sum_probs=43.1
Q ss_pred CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcE
Q 037844 11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKV 90 (126)
Q Consensus 11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~ 90 (126)
++|++|++++|.+.+.. +..+..+++|++|++++|.+++ ..+..+..+++|+++++++|.+++..+..+..+++|+.
T Consensus 59 ~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 135 (251)
T 3m19_A 59 TKLTWLNLDYNQLQTLS--AGVFDDLTELGTLGLANNQLAS-LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKE 135 (251)
T ss_dssp TTCCEEECTTSCCCCCC--TTTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCEEECCCCcCCccC--HhHhccCCcCCEEECCCCcccc-cChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccE
Confidence 34444444444444332 3333444444444444444431 22222333444444444444443222222333444444
Q ss_pred EEeecCccCccchHHHhcCCCCcEEEccCCcC
Q 037844 91 LAIIKCNFCSRITFLLRNLTQLIILHLSQNSF 122 (126)
Q Consensus 91 l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i 122 (126)
|++++|.+.+..+..+..+++|++|++++|.+
T Consensus 136 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 167 (251)
T 3m19_A 136 LRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167 (251)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EECcCCcCCccCHHHcCcCcCCCEEECCCCcC
Confidence 44444444422222333344444444444433
No 16
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.72 E-value=1.5e-17 Score=100.72 Aligned_cols=111 Identities=21% Similarity=0.178 Sum_probs=94.8
Q ss_pred CCceEEEEcCCCCcc-cccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCC
Q 037844 10 RNHVIKLDLPSSCLQ-DSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSL 88 (126)
Q Consensus 10 ~~~l~~L~ls~n~l~-~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L 88 (126)
.++++.|++++|.+. +.. |..+..+++|++|++++|.+++ + ..+..+++|+++++++|.+++..|..+..+++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~--~~~~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 90 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKL--EGLTDEFEELEFLSTINVGLTS--I-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNL 90 (149)
T ss_dssp GGGCSEEECTTCBCBTTBC--CSCCTTCTTCCEEECTTSCCCC--C-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTC
T ss_pred CccCeEEEccCCcCChhHH--HHHHhhcCCCcEEECcCCCCCC--c-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCC
Confidence 368999999999988 566 7777889999999999999983 3 668889999999999999987677777779999
Q ss_pred cEEEeecCccCcc-chHHHhcCCCCcEEEccCCcCeec
Q 037844 89 KVLAIIKCNFCSR-ITFLLRNLTQLIILHLSQNSFRGR 125 (126)
Q Consensus 89 ~~l~l~~n~~~~~-~p~~l~~~~~L~~l~l~~n~i~~~ 125 (126)
+++++++|.+++. .+..+..+++|+++++++|.+++.
T Consensus 91 ~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~ 128 (149)
T 2je0_A 91 THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNL 128 (149)
T ss_dssp CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGS
T ss_pred CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccch
Confidence 9999999999853 347888999999999999988763
No 17
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.72 E-value=7.7e-17 Score=101.80 Aligned_cols=111 Identities=19% Similarity=0.205 Sum_probs=78.3
Q ss_pred CCCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCc-CcCcCCccccCCC
Q 037844 8 KQRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSS-LSGGLPVSTKYLR 86 (126)
Q Consensus 8 ~~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~-~~~~~~~~~~~l~ 86 (126)
...+++++|++++|.+.+.. +..+..+++|++|++++|.+. ...+..+..+++|+++++++|. ++ .++ .+..++
T Consensus 85 ~~l~~L~~L~l~~n~l~~~~--~~~l~~l~~L~~L~Ls~n~i~-~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~ 159 (197)
T 4ezg_A 85 SGLSNLERLRIMGKDVTSDK--IPNLSGLTSLTLLDISHSAHD-DSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLP 159 (197)
T ss_dssp TTCTTCCEEEEECTTCBGGG--SCCCTTCTTCCEEECCSSBCB-GGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCS
T ss_pred hcCCCCCEEEeECCccCccc--ChhhcCCCCCCEEEecCCccC-cHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCC
Confidence 44567788888888777655 567777788888888888876 2456777778888888888886 54 334 577778
Q ss_pred CCcEEEeecCccCccchHHHhcCCCCcEEEccCCcCeec
Q 037844 87 SLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRGR 125 (126)
Q Consensus 87 ~L~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~~ 125 (126)
+|+.|++++|.+++ ++ .+..+++|++|++++|+|.+.
T Consensus 160 ~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~~ 196 (197)
T 4ezg_A 160 ELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGGK 196 (197)
T ss_dssp SCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC-----
T ss_pred CCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCCc
Confidence 88888888888774 44 567778888888888887654
No 18
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.72 E-value=5.7e-17 Score=105.83 Aligned_cols=114 Identities=19% Similarity=0.071 Sum_probs=98.9
Q ss_pred CCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCC
Q 037844 9 QRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSL 88 (126)
Q Consensus 9 ~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L 88 (126)
..++|++|++++|.++... +..+..+++|++|++++|.+++ ..+..+..+++|+.+++++|.+++..+..+..+++|
T Consensus 81 ~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 157 (251)
T 3m19_A 81 DLTELGTLGLANNQLASLP--LGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNL 157 (251)
T ss_dssp TCTTCCEEECTTSCCCCCC--TTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cCCcCCEEECCCCcccccC--hhHhcccCCCCEEEcCCCcCCC-cChhHhccCCcccEEECcCCcCCccCHHHcCcCcCC
Confidence 4578999999999999655 5677889999999999999983 444556889999999999999986666678999999
Q ss_pred cEEEeecCccCccchHHHhcCCCCcEEEccCCcCeec
Q 037844 89 KVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRGR 125 (126)
Q Consensus 89 ~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~~ 125 (126)
+.|++++|.+.+..+..+..+++|+.+++++|++++.
T Consensus 158 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 158 QTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 9999999999977667888999999999999998764
No 19
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.72 E-value=1.2e-16 Score=105.51 Aligned_cols=116 Identities=27% Similarity=0.167 Sum_probs=100.1
Q ss_pred cCCCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCC
Q 037844 7 KKQRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLR 86 (126)
Q Consensus 7 ~~~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~ 86 (126)
....+++++|++++|.+++.. +..+..+++|++|++++|.+++ ..+..+..+++|+++++++|.+++..+..+..++
T Consensus 81 l~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 157 (272)
T 3rfs_A 81 LKELTNLTYLILTGNQLQSLP--NGVFDKLTNLKELVLVENQLQS-LPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLT 157 (272)
T ss_dssp GTTCTTCCEEECTTSCCCCCC--TTTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred hcCCCCCCEEECCCCccCccC--hhHhcCCcCCCEEECCCCcCCc-cCHHHhccCCCCCEEECCCCccCccCHHHhccCc
Confidence 345678999999999999665 5667889999999999999983 4555678899999999999999876666678999
Q ss_pred CCcEEEeecCccCccchHHHhcCCCCcEEEccCCcCeec
Q 037844 87 SLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRGR 125 (126)
Q Consensus 87 ~L~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~~ 125 (126)
+|+.|++++|.+++..+..+..+++|++|++++|.+++.
T Consensus 158 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 196 (272)
T 3rfs_A 158 NLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV 196 (272)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred cCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCcc
Confidence 999999999999977666788999999999999998864
No 20
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.72 E-value=9.9e-17 Score=101.93 Aligned_cols=109 Identities=28% Similarity=0.183 Sum_probs=49.1
Q ss_pred ceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcEE
Q 037844 12 HVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKVL 91 (126)
Q Consensus 12 ~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l 91 (126)
++++|++++|.+.... +..+..+++|++|++++|.+++ ..+..+..+++|+++++++|.+++..+..+..+++|++|
T Consensus 29 ~l~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 105 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLP--NGVFDELTSLTQLYLGGNKLQS-LPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKEL 105 (208)
T ss_dssp TCSEEECCSSCCCCCC--TTTTTTCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCcEEEcCCCccCcCC--hhhhcccccCcEEECCCCccCc-cChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEE
Confidence 4555555555555332 2334445555555555555541 222223444555555555555443323333444444555
Q ss_pred EeecCccCccchHHHhcCCCCcEEEccCCcCe
Q 037844 92 AIIKCNFCSRITFLLRNLTQLIILHLSQNSFR 123 (126)
Q Consensus 92 ~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~ 123 (126)
++++|.+.+..+..+..+++|++|++++|.++
T Consensus 106 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 137 (208)
T 2o6s_A 106 ALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK 137 (208)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred EcCCCcCcccCHhHhccCCcCCEEECCCCccc
Confidence 55444444333333344444444444444443
No 21
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.71 E-value=5.3e-17 Score=104.31 Aligned_cols=113 Identities=18% Similarity=0.015 Sum_probs=98.2
Q ss_pred CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcE
Q 037844 11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKV 90 (126)
Q Consensus 11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~ 90 (126)
..+++|++++|.++...+ +..+..+++|++|++++|.++ ...+..+..+++|+++++++|.+++..+..+..+++|+.
T Consensus 32 ~~~~~L~L~~N~l~~~~~-~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 109 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEA-TGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKT 109 (220)
T ss_dssp TTCSEEECCSSCCCEECC-CCCGGGCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCE
T ss_pred CCCCEEEcCCCcCCccCc-hhhhccCCCCCEEECCCCcCC-EECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCE
Confidence 467899999999996641 245788999999999999998 345557899999999999999998777777899999999
Q ss_pred EEeecCccCccchHHHhcCCCCcEEEccCCcCeec
Q 037844 91 LAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRGR 125 (126)
Q Consensus 91 l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~~ 125 (126)
|++++|.+.+..|..+..+++|++|++++|.+++.
T Consensus 110 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 144 (220)
T 2v70_A 110 LMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTV 144 (220)
T ss_dssp EECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCB
T ss_pred EECCCCcCCeECHhHcCCCccCCEEECCCCcCCEE
Confidence 99999999988788899999999999999998864
No 22
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.71 E-value=3.7e-17 Score=100.77 Aligned_cols=109 Identities=20% Similarity=0.193 Sum_probs=75.8
Q ss_pred CceEEEEcCCCCcc-cccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCc
Q 037844 11 NHVIKLDLPSSCLQ-DSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLK 89 (126)
Q Consensus 11 ~~l~~L~ls~n~l~-~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~ 89 (126)
+++++|++++|.+. +.+ |..+..+++|++|++++|.+++ + ..+..+++|+++++++|.+.+..|..+..+++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i--~~~~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKI--EGLTAEFVNLEFLSLINVGLIS--V-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp TSCSEEECCSCBCBTTBC--SSCCGGGGGCCEEEEESSCCCC--C-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred ccCCEEECCCCCCChhhH--HHHHHhCCCCCEEeCcCCCCCC--h-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence 56788888888776 455 5566777777788887777762 3 5566777777777777777755565555677777
Q ss_pred EEEeecCccCcc-chHHHhcCCCCcEEEccCCcCee
Q 037844 90 VLAIIKCNFCSR-ITFLLRNLTQLIILHLSQNSFRG 124 (126)
Q Consensus 90 ~l~l~~n~~~~~-~p~~l~~~~~L~~l~l~~n~i~~ 124 (126)
.|++++|.+++. .+..+..+++|++|++++|.+++
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~ 134 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTN 134 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGT
T ss_pred EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcc
Confidence 777777777642 12566677777777777777654
No 23
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.71 E-value=1e-16 Score=101.83 Aligned_cols=114 Identities=22% Similarity=0.124 Sum_probs=97.1
Q ss_pred CCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCC
Q 037844 9 QRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSL 88 (126)
Q Consensus 9 ~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L 88 (126)
..+++++|++++|++.... +..+..+++|++|++++|.+++ ..+..+..+++|+++++++|.+++..+..+..+++|
T Consensus 50 ~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 126 (208)
T 2o6s_A 50 ELTSLTQLYLGGNKLQSLP--NGVFNKLTSLTYLNLSTNQLQS-LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQL 126 (208)
T ss_dssp TCTTCSEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred ccccCcEEECCCCccCccC--hhhcCCCCCcCEEECCCCcCCc-cCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcC
Confidence 4578999999999999554 4567889999999999999983 444557889999999999999986666667899999
Q ss_pred cEEEeecCccCccchHHHhcCCCCcEEEccCCcCeec
Q 037844 89 KVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRGR 125 (126)
Q Consensus 89 ~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~~ 125 (126)
+.|++++|.+++..+..+..+++|+++++++|++.+.
T Consensus 127 ~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 163 (208)
T 2o6s_A 127 KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT 163 (208)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC
T ss_pred CEEECCCCccceeCHHHhccCCCccEEEecCCCeecC
Confidence 9999999999966666688899999999999988764
No 24
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.71 E-value=9.2e-17 Score=99.48 Aligned_cols=107 Identities=20% Similarity=0.108 Sum_probs=90.9
Q ss_pred ceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcEE
Q 037844 12 HVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKVL 91 (126)
Q Consensus 12 ~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l 91 (126)
+.+++++++|.++ .+ |..+. +.+++|++++|.+++ ..|..+..+++|+++++++|++++..+..+..+++|++|
T Consensus 10 ~~~~l~~s~n~l~-~i--p~~~~--~~l~~L~L~~N~i~~-~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L 83 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SV--PTGIP--TTTQVLYLYDNQITK-LEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQL 83 (170)
T ss_dssp ETTEEECTTSCCS-SC--CSCCC--TTCSEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCEEEeCCCCcC-cc--CccCC--CCCcEEEcCCCcCCc-cChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEE
Confidence 3578999999988 56 65553 789999999999983 557778899999999999999986666667899999999
Q ss_pred EeecCccCccchHHHhcCCCCcEEEccCCcCee
Q 037844 92 AIIKCNFCSRITFLLRNLTQLIILHLSQNSFRG 124 (126)
Q Consensus 92 ~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~ 124 (126)
++++|++++..+..+..+++|++|++++|+++.
T Consensus 84 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 84 SLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred ECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 999999996656678899999999999998864
No 25
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.71 E-value=9.9e-17 Score=103.58 Aligned_cols=112 Identities=21% Similarity=0.075 Sum_probs=97.1
Q ss_pred CCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCC
Q 037844 9 QRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSL 88 (126)
Q Consensus 9 ~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L 88 (126)
..++|++|++++|++.... +..+..+++|++|++++|.+++ ..+..+..+++|+.+++++|+++ .+|..+..+++|
T Consensus 62 ~l~~L~~L~L~~N~l~~i~--~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L 137 (229)
T 3e6j_A 62 SLINLKELYLGSNQLGALP--VGVFDSLTQLTVLDLGTNQLTV-LPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHL 137 (229)
T ss_dssp TCTTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTC
T ss_pred CccCCcEEECCCCCCCCcC--hhhcccCCCcCEEECCCCcCCc-cChhHhCcchhhCeEeccCCccc-ccCcccccCCCC
Confidence 4578999999999998544 4567889999999999999983 44555788999999999999998 778889999999
Q ss_pred cEEEeecCccCccchHHHhcCCCCcEEEccCCcCee
Q 037844 89 KVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRG 124 (126)
Q Consensus 89 ~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~ 124 (126)
+.|++++|.+.+..+..+..+++|+.+++++|++.+
T Consensus 138 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 138 THLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp SEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred CEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 999999999996655678899999999999999874
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.70 E-value=9.2e-17 Score=112.25 Aligned_cols=113 Identities=23% Similarity=0.143 Sum_probs=82.4
Q ss_pred CCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCc
Q 037844 10 RNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLK 89 (126)
Q Consensus 10 ~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~ 89 (126)
.+++++|++++|.+.+.. +..+..+++|++|++++|.+. ...+..+..+++|+.+++++|.+++..|..+..+++|+
T Consensus 298 l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 374 (455)
T 3v47_A 298 FTDLEQLTLAQNEINKID--DNAFWGLTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLK 374 (455)
T ss_dssp CTTCCEEECTTSCCCEEC--TTTTTTCTTCCEEECCSSCCC-EECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred CCCCCEEECCCCcccccC--hhHhcCcccCCEEECCCCccC-CcChhHhcCcccCCEEECCCCcccccChhhcccccccc
Confidence 356777777777777655 556777777777777777776 34466677777888888888877766677777778888
Q ss_pred EEEeecCccCccchHHHhcCCCCcEEEccCCcCeec
Q 037844 90 VLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRGR 125 (126)
Q Consensus 90 ~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~~ 125 (126)
.|++++|++++..+..+..+++|+++++++|++++.
T Consensus 375 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 410 (455)
T 3v47_A 375 ELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 410 (455)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred EEECCCCccccCCHhHhccCCcccEEEccCCCcccC
Confidence 888888888755445567778888888888887764
No 27
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.70 E-value=4.1e-17 Score=117.49 Aligned_cols=110 Identities=24% Similarity=0.125 Sum_probs=68.9
Q ss_pred CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcE
Q 037844 11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKV 90 (126)
Q Consensus 11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~ 90 (126)
+++++|++++|+++... +..|..+++|++|++++|.++ ...+..|..+++|++|++++|++++..+..|..+++|++
T Consensus 52 ~~~~~LdLs~N~i~~l~--~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~ 128 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLG--SYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 128 (635)
T ss_dssp TTCCEEECTTSCCCEEC--TTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCE
T ss_pred cCCCEEEeeCCCCCCCC--HHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCE
Confidence 35677777777777444 456677777777777777776 233445666777777777777766444445666666666
Q ss_pred EEeecCccCccchHHHhcCCCCcEEEccCCcCe
Q 037844 91 LAIIKCNFCSRITFLLRNLTQLIILHLSQNSFR 123 (126)
Q Consensus 91 l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~ 123 (126)
|++++|.+++..+..++.+++|++|++++|.++
T Consensus 129 L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~ 161 (635)
T 4g8a_A 129 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 161 (635)
T ss_dssp EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCC
T ss_pred EECCCCcCCCCChhhhhcCcccCeeccccCccc
Confidence 666666666433334556666666666666554
No 28
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.70 E-value=7.1e-17 Score=120.93 Aligned_cols=120 Identities=17% Similarity=0.164 Sum_probs=105.9
Q ss_pred CCccccCCCCceEEEEcCCCCcccccCCCccccccccCceeEe-ccCcccCc----------------------------
Q 037844 2 SDQAEKKQRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLIL-LFNKFSGF---------------------------- 52 (126)
Q Consensus 2 ~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l-~~n~~~~~---------------------------- 52 (126)
.||.|+. ..+|+.|+++++.+.+.+ |+.+..++.|+.|++ ++|.+.|.
T Consensus 315 ~GV~C~~-~~~V~~L~Ls~~~L~G~i--p~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~ 391 (876)
T 4ecn_A 315 PGVDLDN-NGRVTGLSLAGFGAKGRV--PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMF 391 (876)
T ss_dssp TTEEECT-TSCEEEEECTTTCCEEEE--CGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHH
T ss_pred CceEecC-CCCEEEEECccCCCCCcC--chHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhh
Confidence 4788875 379999999999999999 899999999999999 66654321
Q ss_pred -----------------------------------------------chhhhhhCCCCCCEEEcccCcCcC---------
Q 037844 53 -----------------------------------------------EILIKIINLSRLSYLNLFYSSLSG--------- 76 (126)
Q Consensus 53 -----------------------------------------------~~~~~~~~l~~L~~l~l~~~~~~~--------- 76 (126)
.+|..++.+++|+.|++++|.+++
T Consensus 392 l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~ 471 (876)
T 4ecn_A 392 LDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWED 471 (876)
T ss_dssp TCCCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSC
T ss_pred hccCcchhhhHHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccc
Confidence 067788999999999999999997
Q ss_pred --------cCCcccc--CCCCCcEEEeecCccCccchHHHhcCCCCcEEEccCCc-Cee
Q 037844 77 --------GLPVSTK--YLRSLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNS-FRG 124 (126)
Q Consensus 77 --------~~~~~~~--~l~~L~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~-i~~ 124 (126)
.+|..++ .+++|+.|++++|.+.+.+|..++.+++|+.|++++|+ ++|
T Consensus 472 ~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg 530 (876)
T 4ecn_A 472 ANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISA 530 (876)
T ss_dssp TTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCH
T ss_pred cccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCccc
Confidence 3888887 99999999999999999999999999999999999998 887
No 29
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.70 E-value=1.5e-16 Score=106.30 Aligned_cols=112 Identities=26% Similarity=0.255 Sum_probs=55.2
Q ss_pred CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcE
Q 037844 11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKV 90 (126)
Q Consensus 11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~ 90 (126)
+++++|++++|.+.... +..+..+++|++|++++|.+.+...|..+..+++|+.+++++|.+++..|..+..+++|+.
T Consensus 126 ~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 203 (306)
T 2z66_A 126 RNLIYLDISHTHTRVAF--NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 203 (306)
T ss_dssp TTCCEEECTTSCCEECS--TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred cCCCEEECCCCcCCccc--hhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCE
Confidence 45555555555555443 3444445555555555555542123444445555555555555554444444445555555
Q ss_pred EEeecCccCccchHHHhcCCCCcEEEccCCcCee
Q 037844 91 LAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRG 124 (126)
Q Consensus 91 l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~ 124 (126)
|++++|.+++..+..+..+++|++|++++|.+++
T Consensus 204 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 237 (306)
T 2z66_A 204 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 237 (306)
T ss_dssp EECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCB
T ss_pred EECCCCccCccChhhccCcccCCEeECCCCCCcc
Confidence 5555555553333344444555555555554443
No 30
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.69 E-value=9.5e-17 Score=108.62 Aligned_cols=109 Identities=18% Similarity=0.219 Sum_probs=66.6
Q ss_pred CCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccC-----
Q 037844 10 RNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKY----- 84 (126)
Q Consensus 10 ~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~----- 84 (126)
.+++++|++++|.+. .+ |..+..+++|++|++++|.++ .+|..+..+++|+++++++|...+.+|..+..
T Consensus 103 l~~L~~L~L~~n~l~-~l--p~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~ 177 (328)
T 4fcg_A 103 LSHLQHMTIDAAGLM-EL--PDTMQQFAGLETLTLARNPLR--ALPASIASLNRLRELSIRACPELTELPEPLASTDASG 177 (328)
T ss_dssp GTTCSEEEEESSCCC-CC--CSCGGGGTTCSEEEEESCCCC--CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CC
T ss_pred CCCCCEEECCCCCcc-ch--hHHHhccCCCCEEECCCCccc--cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchh
Confidence 346666677766666 55 566666677777777777665 45666666666777776666555555554432
Q ss_pred ----CCCCcEEEeecCccCccchHHHhcCCCCcEEEccCCcCee
Q 037844 85 ----LRSLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRG 124 (126)
Q Consensus 85 ----l~~L~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~ 124 (126)
+++|+.|++++|.++ .+|..+..+++|++|++++|.+++
T Consensus 178 ~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~ 220 (328)
T 4fcg_A 178 EHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA 220 (328)
T ss_dssp CEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC
T ss_pred hhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc
Confidence 555666666655555 555555555566666666555543
No 31
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.69 E-value=4.1e-16 Score=96.93 Aligned_cols=116 Identities=17% Similarity=0.050 Sum_probs=93.3
Q ss_pred CccccCCCC-ceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCcc
Q 037844 3 DQAEKKQRN-HVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVS 81 (126)
Q Consensus 3 ~~~~~~~~~-~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~ 81 (126)
..+|+.... .-+.+++++|.+. .+ |..+. +.|++|++++|.+++ ..|..+..+++|++|++++|++++..+..
T Consensus 3 ~~~CP~~C~C~~~~l~~~~n~l~-~i--P~~~~--~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~ 76 (174)
T 2r9u_A 3 SAGCPSQCSCDQTLVNCQNIRLA-SV--PAGIP--TDKQRLWLNNNQITK-LEPGVFDHLVNLQQLYFNSNKLTAIPTGV 76 (174)
T ss_dssp CCSSCTTSEECSSEEECCSSCCS-SC--CSCCC--TTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred CCCCCCCCEECCcEEEeCCCCCC-cc--CCCcC--CCCcEEEeCCCCccc-cCHHHhcCCcCCCEEECCCCCCCccChhH
Confidence 345654322 2368999999987 66 66554 789999999999983 55778889999999999999998654555
Q ss_pred ccCCCCCcEEEeecCccCccchHHHhcCCCCcEEEccCCcCee
Q 037844 82 TKYLRSLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRG 124 (126)
Q Consensus 82 ~~~l~~L~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~ 124 (126)
+..+++|+.|++++|.+.+..+..+..+++|++|++++|++..
T Consensus 77 ~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 77 FDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred hCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCccc
Confidence 7899999999999999995555568899999999999998863
No 32
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.68 E-value=4.4e-16 Score=102.71 Aligned_cols=112 Identities=27% Similarity=0.196 Sum_probs=73.2
Q ss_pred CCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCc
Q 037844 10 RNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLK 89 (126)
Q Consensus 10 ~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~ 89 (126)
.+++++|++++|.+.... +..+..+++|++|++++|.+. ...+..+..+++|+++++++|.+.+..+..+..+++|+
T Consensus 51 l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 127 (276)
T 2z62_A 51 FPELQVLDLSRCEIQTIE--DGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127 (276)
T ss_dssp CTTCSEEECTTCCCCEEC--TTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCC
T ss_pred ccCCcEEECCCCcCCccC--HHHccCCcCCCEEECCCCccC-ccChhhhcCCccccEEECCCCCccccCchhcccCCCCC
Confidence 355666666666665443 345556666666666666665 23344566666667777666666644444566777788
Q ss_pred EEEeecCccCc-cchHHHhcCCCCcEEEccCCcCee
Q 037844 90 VLAIIKCNFCS-RITFLLRNLTQLIILHLSQNSFRG 124 (126)
Q Consensus 90 ~l~l~~n~~~~-~~p~~l~~~~~L~~l~l~~n~i~~ 124 (126)
.|++++|.+.+ .+|..+..+++|++|++++|.+++
T Consensus 128 ~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~ 163 (276)
T 2z62_A 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163 (276)
T ss_dssp EEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred EEECcCCccceecCchhhccCCCCCEEECCCCCCCc
Confidence 88888887775 357777888888888888887765
No 33
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.68 E-value=3.2e-16 Score=104.45 Aligned_cols=109 Identities=27% Similarity=0.155 Sum_probs=55.8
Q ss_pred CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcE
Q 037844 11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKV 90 (126)
Q Consensus 11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~ 90 (126)
+++++|++++|.+. .+ |..+..+++|++|++++|.+++ ..+..+..+++|+++++++|++++..+..+..+++|+.
T Consensus 77 ~~L~~L~Ls~N~l~-~l--~~~~~~l~~L~~L~l~~N~l~~-l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 152 (290)
T 1p9a_G 77 PVLGTLDLSHNQLQ-SL--PLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK 152 (290)
T ss_dssp TTCCEEECCSSCCS-SC--CCCTTTCTTCCEEECCSSCCCC-CCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred CcCCEEECCCCcCC-cC--chhhccCCCCCEEECCCCcCcc-cCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCE
Confidence 44555555555554 33 4444555555555555555551 22344555555555555555555433334445555555
Q ss_pred EEeecCccCccchHHHhcCCCCcEEEccCCcCe
Q 037844 91 LAIIKCNFCSRITFLLRNLTQLIILHLSQNSFR 123 (126)
Q Consensus 91 l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~ 123 (126)
|++++|+++...+..+..+++|++|++++|.++
T Consensus 153 L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 185 (290)
T 1p9a_G 153 LSLANNNLTELPAGLLNGLENLDTLLLQENSLY 185 (290)
T ss_dssp EECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred EECCCCcCCccCHHHhcCcCCCCEEECCCCcCC
Confidence 555555555332333444555555555555543
No 34
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.68 E-value=6.1e-17 Score=119.43 Aligned_cols=110 Identities=26% Similarity=0.290 Sum_probs=101.0
Q ss_pred CCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCC
Q 037844 9 QRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSL 88 (126)
Q Consensus 9 ~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L 88 (126)
..+.|+.|++++|.+. .+ |..+..+++|++|+|++|.++ .+|..++.+++|++|++++|.++ .+|..++.+++|
T Consensus 222 ~l~~L~~L~Ls~n~l~-~l--~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L 295 (727)
T 4b8c_D 222 DDQLWHALDLSNLQIF-NI--SANIFKYDFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQL 295 (727)
T ss_dssp CCCCCCEEECTTSCCS-CC--CGGGGGCCSCSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTC
T ss_pred cCCCCcEEECCCCCCC-CC--ChhhcCCCCCCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCC
Confidence 4478999999999998 66 777889999999999999998 68888999999999999999998 779999999999
Q ss_pred cEEEeecCccCccchHHHhcCCCCcEEEccCCcCeec
Q 037844 89 KVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRGR 125 (126)
Q Consensus 89 ~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~~ 125 (126)
++|+|++|.++ .+|..++.+++|++|++++|+++|.
T Consensus 296 ~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~ 331 (727)
T 4b8c_D 296 KYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQ 331 (727)
T ss_dssp SEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSH
T ss_pred CEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCC
Confidence 99999999998 8888899999999999999999874
No 35
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.68 E-value=4.3e-16 Score=112.16 Aligned_cols=115 Identities=26% Similarity=0.175 Sum_probs=99.6
Q ss_pred CCCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCC
Q 037844 8 KQRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRS 87 (126)
Q Consensus 8 ~~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~ 87 (126)
...++|++|++++|+++... +..+..+++|++|++++|.++ ...+..|..+++|++|++++|++++..+..++.+++
T Consensus 73 ~~l~~L~~L~Ls~N~i~~i~--~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~ 149 (635)
T 4g8a_A 73 FSFPELQVLDLSRCEIQTIE--DGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 149 (635)
T ss_dssp TTCTTCCEEECTTCCCCEEC--TTTTTTCTTCCEEECTTCCCC-EECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTT
T ss_pred hCCCCCCEEECCCCcCCCcC--hhHhcCCCCCCEEEccCCcCC-CCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcc
Confidence 45579999999999999665 667899999999999999998 244456889999999999999998666667899999
Q ss_pred CcEEEeecCccCc-cchHHHhcCCCCcEEEccCCcCeec
Q 037844 88 LKVLAIIKCNFCS-RITFLLRNLTQLIILHLSQNSFRGR 125 (126)
Q Consensus 88 L~~l~l~~n~~~~-~~p~~l~~~~~L~~l~l~~n~i~~~ 125 (126)
|++|++++|.+.+ ..|..++.+++|++|++++|++++.
T Consensus 150 L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~ 188 (635)
T 4g8a_A 150 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188 (635)
T ss_dssp CCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred cCeeccccCccccCCCchhhccchhhhhhcccCcccccc
Confidence 9999999999875 4678889999999999999998763
No 36
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.68 E-value=2.1e-16 Score=99.84 Aligned_cols=107 Identities=13% Similarity=0.199 Sum_probs=53.2
Q ss_pred CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcE
Q 037844 11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKV 90 (126)
Q Consensus 11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~ 90 (126)
+++++|++++|.+. . ++.+..+++|++|++++|.+.+ ..+..+..+++|+++++++|.+++..+..+..+++|+.
T Consensus 66 ~~L~~L~l~~n~~~-~---~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~ 140 (197)
T 4ezg_A 66 HNIKDLTINNIHAT-N---YNPISGLSNLERLRIMGKDVTS-DKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNS 140 (197)
T ss_dssp TTCSEEEEESCCCS-C---CGGGTTCTTCCEEEEECTTCBG-GGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCE
T ss_pred CCCCEEEccCCCCC-c---chhhhcCCCCCEEEeECCccCc-ccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCE
Confidence 44555555555333 1 2234445555555555555541 33444555555555555555555444444555555555
Q ss_pred EEeecCc-cCccchHHHhcCCCCcEEEccCCcCee
Q 037844 91 LAIIKCN-FCSRITFLLRNLTQLIILHLSQNSFRG 124 (126)
Q Consensus 91 l~l~~n~-~~~~~p~~l~~~~~L~~l~l~~n~i~~ 124 (126)
|++++|. +. .++ .+..+++|+.|++++|.+++
T Consensus 141 L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~ 173 (197)
T 4ezg_A 141 IDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD 173 (197)
T ss_dssp EECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC
T ss_pred EEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC
Confidence 5555554 33 333 34555555555555555543
No 37
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.68 E-value=3.6e-16 Score=103.55 Aligned_cols=62 Identities=26% Similarity=0.244 Sum_probs=24.8
Q ss_pred CCCCCEEEcccCcCcCcCCccccCCCCCcEEEeecCccCccchHHHhcCCCCcEEEccCCcC
Q 037844 61 LSRLSYLNLFYSSLSGGLPVSTKYLRSLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSF 122 (126)
Q Consensus 61 l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i 122 (126)
+++|+.+++++|.+.+..|..+..+++|+.|++++|.+++..+..+..+++|+.+++++|++
T Consensus 176 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 176 LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred ccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCc
Confidence 33333333333333333333333344444444444444433333344444444444444443
No 38
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.68 E-value=4.1e-16 Score=112.41 Aligned_cols=113 Identities=23% Similarity=0.170 Sum_probs=77.4
Q ss_pred CCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCC
Q 037844 9 QRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSL 88 (126)
Q Consensus 9 ~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L 88 (126)
..+++++|++++|.+.+.. |..+..+++|++|++++|.+.+ ..|..++.+++|+++++++|.+.+..+..++.+++|
T Consensus 54 ~l~~L~~L~Ls~n~l~~i~--~~~~~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 130 (606)
T 3vq2_A 54 NFSELQWLDLSRCEIETIE--DKAWHGLHHLSNLILTGNPIQS-FSPGSFSGLTSLENLVAVETKLASLESFPIGQLITL 130 (606)
T ss_dssp TCTTCCEEECTTCCCCEEC--TTTTTTCTTCCEEECTTCCCCC-CCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTC
T ss_pred CCccCcEEeCCCCcccccC--HHHhhchhhcCEeECCCCcccc-cChhhcCCcccCCEEEccCCccccccccccCCCCCC
Confidence 3456666777766666554 5556666777777777776662 446666677777777777777665544566777777
Q ss_pred cEEEeecCccCc-cchHHHhcCCCCcEEEccCCcCee
Q 037844 89 KVLAIIKCNFCS-RITFLLRNLTQLIILHLSQNSFRG 124 (126)
Q Consensus 89 ~~l~l~~n~~~~-~~p~~l~~~~~L~~l~l~~n~i~~ 124 (126)
++|++++|.+.+ .+|..++.+++|++|++++|.+++
T Consensus 131 ~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~ 167 (606)
T 3vq2_A 131 KKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT 167 (606)
T ss_dssp CEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCE
T ss_pred CEEeCCCCcccceechHhHhhcCCCCEEEccCCccee
Confidence 777777777764 457778888888888888887765
No 39
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.67 E-value=3.8e-16 Score=112.52 Aligned_cols=106 Identities=21% Similarity=0.206 Sum_probs=96.4
Q ss_pred ceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcEE
Q 037844 12 HVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKVL 91 (126)
Q Consensus 12 ~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l 91 (126)
.++.|++++|.+++ + |. +..+++|+.|++++|.++ .+|..++.+++|+.|++++|.+++ +| .++.+++|+.|
T Consensus 442 ~L~~L~Ls~n~l~~-l--p~-~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L 513 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-L--CH-LEQLLLVTHLDLSHNRLR--ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQEL 513 (567)
T ss_dssp TCSEEECTTSCCSS-C--CC-GGGGTTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEE
T ss_pred CceEEEecCCCCCC-C--cC-ccccccCcEeecCccccc--ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEE
Confidence 58899999999985 6 65 899999999999999998 688899999999999999999985 56 78999999999
Q ss_pred EeecCccCccc-hHHHhcCCCCcEEEccCCcCeec
Q 037844 92 AIIKCNFCSRI-TFLLRNLTQLIILHLSQNSFRGR 125 (126)
Q Consensus 92 ~l~~n~~~~~~-p~~l~~~~~L~~l~l~~n~i~~~ 125 (126)
++++|.+++.. |..++.+++|+.|++++|++++.
T Consensus 514 ~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 514 LLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548 (567)
T ss_dssp ECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred ECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence 99999999765 89999999999999999999874
No 40
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.67 E-value=6.9e-16 Score=102.20 Aligned_cols=108 Identities=23% Similarity=0.099 Sum_probs=43.5
Q ss_pred ceEEEEcCCCCcccccCCCccccccccCceeEeccCc-ccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcE
Q 037844 12 HVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNK-FSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKV 90 (126)
Q Consensus 12 ~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~ 90 (126)
++++|++++|.+.+.. +..+..+++|++|++++|. +. ...+..+..+++|+++++++|.+++..+..+..+++|++
T Consensus 57 ~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 133 (285)
T 1ozn_A 57 NLTILWLHSNVLARID--AAAFTGLALLEQLDLSDNAQLR-SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQY 133 (285)
T ss_dssp TCCEEECCSSCCCEEC--TTTTTTCTTCCEEECCSCTTCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred CCCEEECCCCccceeC--HhhcCCccCCCEEeCCCCCCcc-ccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCE
Confidence 4444444444444333 3334444444444444443 32 122333334444444444444444333333344444444
Q ss_pred EEeecCccCccchHHHhcCCCCcEEEccCCcC
Q 037844 91 LAIIKCNFCSRITFLLRNLTQLIILHLSQNSF 122 (126)
Q Consensus 91 l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i 122 (126)
|++++|.+.+..+..+..+++|++|++++|.+
T Consensus 134 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 165 (285)
T 1ozn_A 134 LYLQDNALQALPDDTFRDLGNLTHLFLHGNRI 165 (285)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCcccccCHhHhccCCCccEEECCCCcc
Confidence 44444444422222333344444444444433
No 41
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.67 E-value=2.6e-16 Score=109.99 Aligned_cols=111 Identities=22% Similarity=0.095 Sum_probs=101.3
Q ss_pred CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcE
Q 037844 11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKV 90 (126)
Q Consensus 11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~ 90 (126)
+++++|++++|.+.+.. |..+..+++|++|++++|.+. ...+..+..+++|+.+++++|.+++..+..+..+++|+.
T Consensus 275 ~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 351 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALL--KSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEV 351 (455)
T ss_dssp SCCCEEECCSSCCCEEC--TTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCE
T ss_pred cCceEEEecCccccccc--hhhcccCCCCCEEECCCCccc-ccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCE
Confidence 57999999999999877 778899999999999999998 356778889999999999999998777888899999999
Q ss_pred EEeecCccCccchHHHhcCCCCcEEEccCCcCee
Q 037844 91 LAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRG 124 (126)
Q Consensus 91 l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~ 124 (126)
|++++|.+++..|..+..+++|++|++++|++++
T Consensus 352 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 385 (455)
T 3v47_A 352 LDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS 385 (455)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred EECCCCcccccChhhccccccccEEECCCCcccc
Confidence 9999999998888899999999999999999876
No 42
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.67 E-value=4.2e-16 Score=106.61 Aligned_cols=110 Identities=18% Similarity=0.180 Sum_probs=60.9
Q ss_pred CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcE
Q 037844 11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKV 90 (126)
Q Consensus 11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~ 90 (126)
++|++|++++|++.... +..+..+++|++|++++|.++ ...+..+..+++|+.|++++|.+.+..+..+..+++|+.
T Consensus 64 ~~L~~L~L~~N~i~~i~--~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~ 140 (361)
T 2xot_A 64 TNLHSLLLSHNHLNFIS--SEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQK 140 (361)
T ss_dssp TTCCEEECCSSCCCEEC--TTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred cccCEEECCCCcCCccC--hhhccCCCCCCEEECCCCcCC-cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCE
Confidence 45555666666555433 344555566666666666655 223334555666666666666665544555566666666
Q ss_pred EEeecCccCccchHH-H---hcCCCCcEEEccCCcCee
Q 037844 91 LAIIKCNFCSRITFL-L---RNLTQLIILHLSQNSFRG 124 (126)
Q Consensus 91 l~l~~n~~~~~~p~~-l---~~~~~L~~l~l~~n~i~~ 124 (126)
|++++|.+.. +|.. + ..+++|+.|++++|++++
T Consensus 141 L~L~~N~l~~-l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 141 LYLSQNQISR-FPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp EECCSSCCCS-CCGGGTC----CTTCCEEECCSSCCCC
T ss_pred EECCCCcCCe-eCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 6666666663 3332 2 345666666666666553
No 43
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.67 E-value=3.9e-16 Score=106.77 Aligned_cols=111 Identities=23% Similarity=0.202 Sum_probs=97.4
Q ss_pred CceEEEEcCCCCcccccCCCcccc-ccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCc
Q 037844 11 NHVIKLDLPSSCLQDSINSSSGLF-KLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLK 89 (126)
Q Consensus 11 ~~l~~L~ls~n~l~~~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~ 89 (126)
..++.|++++|.++... +..+. .+++|++|++++|.+. ...+..+..+++|++|++++|+++...+..+..+++|+
T Consensus 39 ~~l~~L~Ls~N~l~~l~--~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 115 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLR--AEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALE 115 (361)
T ss_dssp TTCSEEECCSSCCCEEC--TTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred CCCCEEECCCCCCCccC--hhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCC
Confidence 46899999999999665 55566 8999999999999998 34556788999999999999999876666788999999
Q ss_pred EEEeecCccCccchHHHhcCCCCcEEEccCCcCee
Q 037844 90 VLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRG 124 (126)
Q Consensus 90 ~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~ 124 (126)
.|++++|.+.+..+..+..+++|+.|++++|.+++
T Consensus 116 ~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~ 150 (361)
T 2xot_A 116 VLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR 150 (361)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS
T ss_pred EEECCCCcccEECHHHhCCcccCCEEECCCCcCCe
Confidence 99999999997778889999999999999999875
No 44
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.66 E-value=8.4e-16 Score=101.24 Aligned_cols=63 Identities=29% Similarity=0.300 Sum_probs=23.5
Q ss_pred CCCCCCEEEcccCcCcCcCCccccCCCCCcEEEeecCccCccchHHHhcCCCCcEEEccCCcC
Q 037844 60 NLSRLSYLNLFYSSLSGGLPVSTKYLRSLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSF 122 (126)
Q Consensus 60 ~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i 122 (126)
.+++|+++++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+
T Consensus 131 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 193 (270)
T 2o6q_A 131 SLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL 193 (270)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcC
Confidence 333344444444433322222233334444444444444322222333334444444444433
No 45
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.66 E-value=9.8e-16 Score=96.64 Aligned_cols=104 Identities=17% Similarity=0.131 Sum_probs=92.4
Q ss_pred EEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcEEEe
Q 037844 14 IKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKVLAI 93 (126)
Q Consensus 14 ~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l 93 (126)
+.++++++.++ .+ |..+. +.+++|++++|.++ .+|..+..+++|+.+++++|.+++..+..|..++.|+.|++
T Consensus 13 ~~l~~~~~~l~-~i--p~~~~--~~l~~L~L~~n~i~--~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~L 85 (193)
T 2wfh_A 13 TVVRCSNKGLK-VL--PKGIP--RDVTELYLDGNQFT--LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLIL 85 (193)
T ss_dssp TEEECTTSCCS-SC--CSCCC--TTCCEEECCSSCCC--SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CEEEcCCCCCC-cC--CCCCC--CCCCEEECCCCcCc--hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEEC
Confidence 57899999988 56 65543 58999999999998 57888999999999999999999777778999999999999
Q ss_pred ecCccCccchHHHhcCCCCcEEEccCCcCee
Q 037844 94 IKCNFCSRITFLLRNLTQLIILHLSQNSFRG 124 (126)
Q Consensus 94 ~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~ 124 (126)
++|.+++..+..+..+++|++|++++|.+++
T Consensus 86 s~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~ 116 (193)
T 2wfh_A 86 SYNRLRCIPPRTFDGLKSLRLLSLHGNDISV 116 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred CCCccCEeCHHHhCCCCCCCEEECCCCCCCe
Confidence 9999997777789999999999999999875
No 46
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.66 E-value=6e-16 Score=97.45 Aligned_cols=106 Identities=20% Similarity=0.114 Sum_probs=92.2
Q ss_pred EEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhh-hhhCCCCCCEEEcccCcCcCcCCccccCCCCCcEEE
Q 037844 14 IKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILI-KIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKVLA 92 (126)
Q Consensus 14 ~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ 92 (126)
++++++++.++ .+ |..+.. .+++|++++|.+.+ ..+. .+..+++|+++++++|.+++..|..+..++.|+.|+
T Consensus 11 ~~l~~s~~~l~-~i--p~~~~~--~l~~L~l~~n~i~~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 84 (192)
T 1w8a_A 11 TTVDCTGRGLK-EI--PRDIPL--HTTELLLNDNELGR-ISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQ 84 (192)
T ss_dssp TEEECTTSCCS-SC--CSCCCT--TCSEEECCSCCCCS-BCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CEEEcCCCCcC-cC--ccCCCC--CCCEEECCCCcCCc-cCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEE
Confidence 68999999997 66 665543 89999999999983 3332 388999999999999999988888999999999999
Q ss_pred eecCccCccchHHHhcCCCCcEEEccCCcCeec
Q 037844 93 IIKCNFCSRITFLLRNLTQLIILHLSQNSFRGR 125 (126)
Q Consensus 93 l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~~ 125 (126)
+++|.+++..+..+..+++|++|++++|.+++.
T Consensus 85 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 117 (192)
T 1w8a_A 85 LGENKIKEISNKMFLGLHQLKTLNLYDNQISCV 117 (192)
T ss_dssp CCSCCCCEECSSSSTTCTTCCEEECCSSCCCEE
T ss_pred CCCCcCCccCHHHhcCCCCCCEEECCCCcCCee
Confidence 999999987777789999999999999999874
No 47
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.66 E-value=1.2e-16 Score=116.27 Aligned_cols=114 Identities=15% Similarity=0.159 Sum_probs=101.3
Q ss_pred CCCceEEEEcCCCCcccc-----------------cCCCcccc--ccccCceeEeccCcccCcchhhhhhCCCCCCEEEc
Q 037844 9 QRNHVIKLDLPSSCLQDS-----------------INSSSGLF--KLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNL 69 (126)
Q Consensus 9 ~~~~l~~L~ls~n~l~~~-----------------~~~~~~~~--~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l 69 (126)
..+++++|++++|.+++. + |..+. .+++|++|++++|.+.+ .+|..++.+++|+++++
T Consensus 204 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~i--p~~l~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L 280 (636)
T 4eco_A 204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK--TEDLKWDNLKDLTDVEVYNCPNLT-KLPTFLKALPEMQLINV 280 (636)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT--TSCCCGGGCTTCCEEEEECCTTCS-SCCTTTTTCSSCCEEEC
T ss_pred cccCCCEEECcCCccccccccccccccccchhcccC--chhhhhcccCCCCEEEecCCcCCc-cChHHHhcCCCCCEEEC
Confidence 457899999999999974 7 88888 99999999999999885 78888999999999999
Q ss_pred ccCc-CcC-cCCccccCC------CCCcEEEeecCccCccchH--HHhcCCCCcEEEccCCcCeecC
Q 037844 70 FYSS-LSG-GLPVSTKYL------RSLKVLAIIKCNFCSRITF--LLRNLTQLIILHLSQNSFRGRI 126 (126)
Q Consensus 70 ~~~~-~~~-~~~~~~~~l------~~L~~l~l~~n~~~~~~p~--~l~~~~~L~~l~l~~n~i~~~~ 126 (126)
++|+ +++ .+|..++.+ ++|+.|++++|.++ .+|. .++.+++|++|++++|.++|.+
T Consensus 281 s~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~i 346 (636)
T 4eco_A 281 ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKL 346 (636)
T ss_dssp TTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEEC
T ss_pred cCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccch
Confidence 9998 887 788877776 89999999999999 8888 8999999999999999998764
No 48
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.66 E-value=1.3e-15 Score=100.29 Aligned_cols=110 Identities=23% Similarity=0.108 Sum_probs=50.4
Q ss_pred CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcE
Q 037844 11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKV 90 (126)
Q Consensus 11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~ 90 (126)
++|++|++++|.++... +..+..+++|++|++++|.+.+ ..+..+..+++|+++++++|.+++..+..+..+++|+.
T Consensus 61 ~~L~~L~l~~n~l~~i~--~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 137 (270)
T 2o6q_A 61 TKLRLLYLNDNKLQTLP--AGIFKELKNLETLWVTDNKLQA-LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTY 137 (270)
T ss_dssp TTCCEEECCSSCCSCCC--TTTTSSCTTCCEEECCSSCCCC-CCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCEEECCCCccCeeC--hhhhcCCCCCCEEECCCCcCCc-CCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCE
Confidence 34444444444444221 2223334444444444444441 22223344445555555555544333334445555555
Q ss_pred EEeecCccCccchHHHhcCCCCcEEEccCCcCe
Q 037844 91 LAIIKCNFCSRITFLLRNLTQLIILHLSQNSFR 123 (126)
Q Consensus 91 l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~ 123 (126)
|++++|.+.+..+..+..+++|+.|++++|.++
T Consensus 138 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 170 (270)
T 2o6q_A 138 LSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK 170 (270)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred EECCCCcCCccCHhHccCCcccceeEecCCcCc
Confidence 555555555333333455555666666555554
No 49
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.66 E-value=6.5e-16 Score=110.43 Aligned_cols=115 Identities=22% Similarity=0.197 Sum_probs=97.9
Q ss_pred CCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCC
Q 037844 9 QRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSL 88 (126)
Q Consensus 9 ~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L 88 (126)
..+++++|++++|.+.+.. +..+..+++|++|++++|.+.+..+|..+..+++|+.+++++|.+++..|..+..+++|
T Consensus 419 ~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 496 (570)
T 2z63_A 419 SLRNLIYLDISHTHTRVAF--NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 496 (570)
T ss_dssp TCTTCCEEECTTSCCEECC--TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred cCCCCCEEeCcCCcccccc--hhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCC
Confidence 4468888999998888766 67788889999999999988632577778889999999999999987778888899999
Q ss_pred cEEEeecCccCccchHHHhcCCCCcEEEccCCcCeec
Q 037844 89 KVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRGR 125 (126)
Q Consensus 89 ~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~~ 125 (126)
+.|++++|.+++..+..+..+++|+.+++++|++++.
T Consensus 497 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 533 (570)
T 2z63_A 497 QVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 533 (570)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCC
Confidence 9999999999977777788899999999999998875
No 50
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.65 E-value=5.1e-16 Score=111.92 Aligned_cols=112 Identities=19% Similarity=0.120 Sum_probs=69.6
Q ss_pred CCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCc
Q 037844 10 RNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLK 89 (126)
Q Consensus 10 ~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~ 89 (126)
.+++++|++++|.+.+.. |..+..+++|++|++++|.+.+...|..+..+++|+.+++++|.+++..|..+..+++|+
T Consensus 423 l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 500 (606)
T 3vq2_A 423 LEKLLYLDISYTNTKIDF--DGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQ 500 (606)
T ss_dssp CTTCCEEECTTSCCEECC--TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred cccCCEEECcCCCCCccc--hhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCC
Confidence 355666666666666555 555666666666666666665212455556666666666666666655555566666666
Q ss_pred EEEeecCccCccchHHHhcCCCCcEEEccCCcCe
Q 037844 90 VLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFR 123 (126)
Q Consensus 90 ~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~ 123 (126)
.|++++|++++..|..+..+++|+.|++++|+++
T Consensus 501 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 534 (606)
T 3vq2_A 501 LLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 534 (606)
T ss_dssp EEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC
T ss_pred EEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc
Confidence 6666666666555666666666666666666654
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.65 E-value=5.6e-16 Score=103.52 Aligned_cols=113 Identities=21% Similarity=0.183 Sum_probs=100.3
Q ss_pred CCCceEEEEcCCCCccc-ccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCC
Q 037844 9 QRNHVIKLDLPSSCLQD-SINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRS 87 (126)
Q Consensus 9 ~~~~l~~L~ls~n~l~~-~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~ 87 (126)
..+++++|++++|.+.+ .. |..+..+++|++|++++|.+. ...|..+..+++|+.+++++|.+++..+..+..+++
T Consensus 148 ~l~~L~~L~l~~n~l~~~~~--~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 224 (306)
T 2z66_A 148 GLSSLEVLKMAGNSFQENFL--PDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS 224 (306)
T ss_dssp TCTTCCEEECTTCEEGGGEE--CSCCTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTT
T ss_pred cCcCCCEEECCCCccccccc--hhHHhhCcCCCEEECCCCCcC-CcCHHHhcCCCCCCEEECCCCccCccChhhccCccc
Confidence 34789999999999986 46 778899999999999999998 355778889999999999999998766667889999
Q ss_pred CcEEEeecCccCccchHHHhcCC-CCcEEEccCCcCee
Q 037844 88 LKVLAIIKCNFCSRITFLLRNLT-QLIILHLSQNSFRG 124 (126)
Q Consensus 88 L~~l~l~~n~~~~~~p~~l~~~~-~L~~l~l~~n~i~~ 124 (126)
|+.|++++|.+.+..|..+..++ +|+++++++|++++
T Consensus 225 L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 225 LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp CCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred CCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 99999999999988888888885 89999999999876
No 52
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.64 E-value=9.4e-16 Score=101.14 Aligned_cols=111 Identities=23% Similarity=0.125 Sum_probs=97.5
Q ss_pred CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcE
Q 037844 11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKV 90 (126)
Q Consensus 11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~ 90 (126)
+++++|++++|.+++.. +..+..+++|++|++++|.+. ...+..+..+++|+++++++|.+++..+..+..+++|+.
T Consensus 28 ~~l~~L~ls~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLG--SYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 104 (276)
T ss_dssp TTCCEEECTTCCCCEEC--TTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred CCccEEECCCCcccccC--HhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccE
Confidence 46999999999999665 568889999999999999998 345557889999999999999998777788999999999
Q ss_pred EEeecCccCccchHHHhcCCCCcEEEccCCcCee
Q 037844 91 LAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRG 124 (126)
Q Consensus 91 l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~ 124 (126)
|++++|.+.+..+..+..+++|++|++++|.+++
T Consensus 105 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 138 (276)
T 2z62_A 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138 (276)
T ss_dssp EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCC
T ss_pred EECCCCCccccCchhcccCCCCCEEECcCCccce
Confidence 9999999996655578899999999999999875
No 53
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.64 E-value=1.4e-15 Score=109.99 Aligned_cols=112 Identities=19% Similarity=0.043 Sum_probs=90.2
Q ss_pred CCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCc
Q 037844 10 RNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLK 89 (126)
Q Consensus 10 ~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~ 89 (126)
.++|++|++++|.+.+.. +..+..+++|++|++++|.+.+ ..|..++.+++|++|++++|.+++..+..+..+++|+
T Consensus 74 l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~ 150 (597)
T 3oja_B 74 FRQVELLNLNDLQIEEID--TYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT 150 (597)
T ss_dssp CCCCSEEECTTSCCCEEC--TTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCCcEEECCCCCCCCCC--hHHhcCCCCCCEEECCCCcCCC-CCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCC
Confidence 367888888888888665 5678888889999999988873 5556678888899999998888754444467888899
Q ss_pred EEEeecCccCccchHHHhcCCCCcEEEccCCcCee
Q 037844 90 VLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRG 124 (126)
Q Consensus 90 ~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~ 124 (126)
+|++++|.+.+..|..+..+++|++|++++|.+++
T Consensus 151 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 185 (597)
T 3oja_B 151 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 185 (597)
T ss_dssp EEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB
T ss_pred EEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC
Confidence 99999998887777778888889999998888765
No 54
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.64 E-value=1.9e-15 Score=103.97 Aligned_cols=112 Identities=19% Similarity=0.043 Sum_probs=82.5
Q ss_pred CCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCc
Q 037844 10 RNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLK 89 (126)
Q Consensus 10 ~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~ 89 (126)
.+++++|++++|.+.... +..+..+++|++|++++|.+.+ ..|..+..+++|+++++++|.++...+..+..+++|+
T Consensus 68 l~~L~~L~L~~n~i~~~~--~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~ 144 (390)
T 3o6n_A 68 FRQVELLNLNDLQIEEID--TYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT 144 (390)
T ss_dssp CCCCSEEECTTSCCCEEC--TTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cccCcEEECCCCcccccC--hhhccCCCCcCEEECCCCCCCc-CCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCc
Confidence 367788888888877554 5577778888888888888773 4455677788888888888887743333357788888
Q ss_pred EEEeecCccCccchHHHhcCCCCcEEEccCCcCee
Q 037844 90 VLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRG 124 (126)
Q Consensus 90 ~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~ 124 (126)
+|++++|.+.+..+..+..+++|++|++++|.+++
T Consensus 145 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 179 (390)
T 3o6n_A 145 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 179 (390)
T ss_dssp EEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB
T ss_pred EEECCCCccCccChhhccCCCCCCEEECCCCcCCc
Confidence 88888888876666667777888888888887764
No 55
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.64 E-value=9.4e-16 Score=110.52 Aligned_cols=111 Identities=22% Similarity=0.117 Sum_probs=80.5
Q ss_pred CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcE
Q 037844 11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKV 90 (126)
Q Consensus 11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~ 90 (126)
+++++|++++|.+++.. |..+..+++|++|++++|.+. ...|..+..+++|+++++++|.+.+..|..++.+++|++
T Consensus 33 ~~l~~L~Ls~n~i~~~~--~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 109 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQ--NTTFSRLINLTFLDLTRCQIY-WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKH 109 (606)
T ss_dssp TTCCEEECTTCCCSEEC--TTTSTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCE
T ss_pred CcCcEEEccCCccCcCC--hhHhccCccceEEECCCCccc-eeChhhccCccccCeeeCCCCcccccChhhhcccccccE
Confidence 46778888888877665 667777788888888888776 355666777778888888877777666667777777777
Q ss_pred EEeecCccCccchHHHhcCCCCcEEEccCCcCee
Q 037844 91 LAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRG 124 (126)
Q Consensus 91 l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~ 124 (126)
|++++|.+++..+..++.+++|++|++++|.+++
T Consensus 110 L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~ 143 (606)
T 3t6q_A 110 LFFIQTGISSIDFIPLHNQKTLESLYLGSNHISS 143 (606)
T ss_dssp EECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCC
T ss_pred eeccccCcccCCcchhccCCcccEEECCCCcccc
Confidence 7777777775445556667777777777776654
No 56
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.63 E-value=2.5e-15 Score=100.16 Aligned_cols=111 Identities=18% Similarity=0.033 Sum_probs=96.2
Q ss_pred CCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCC
Q 037844 9 QRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSL 88 (126)
Q Consensus 9 ~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L 88 (126)
..+++++|++++|+++... +..+..+++|++|++++|.+++ ..+..+..+++|+.+++++|++++..+..+..+++|
T Consensus 98 ~l~~L~~L~l~~N~l~~l~--~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L 174 (290)
T 1p9a_G 98 TLPALTVLDVSFNRLTSLP--LGALRGLGELQELYLKGNELKT-LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENL 174 (290)
T ss_dssp TCTTCCEEECCSSCCCCCC--SSTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTC
T ss_pred cCCCCCEEECCCCcCcccC--HHHHcCCCCCCEEECCCCCCCc-cChhhcccccCCCEEECCCCcCCccCHHHhcCcCCC
Confidence 4578999999999999655 5778999999999999999983 445556789999999999999985555556889999
Q ss_pred cEEEeecCccCccchHHHhcCCCCcEEEccCCcCe
Q 037844 89 KVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFR 123 (126)
Q Consensus 89 ~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~ 123 (126)
+.|++++|+++ .+|..+....+|+.+++++|++.
T Consensus 175 ~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 175 DTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred CEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 99999999999 78888888899999999999875
No 57
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.63 E-value=1e-15 Score=114.34 Aligned_cols=92 Identities=23% Similarity=0.167 Sum_probs=45.2
Q ss_pred cccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCcc--ccCCCCCcEEEeecCccCccch-HHHhc
Q 037844 32 GLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVS--TKYLRSLKVLAIIKCNFCSRIT-FLLRN 108 (126)
Q Consensus 32 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~--~~~l~~L~~l~l~~n~~~~~~p-~~l~~ 108 (126)
.+..+++|++|++++|.+. ...|..+..+++|++|++++|.+.+..+.. +..+++|++|++++|.+.+..+ ..++.
T Consensus 68 ~f~~L~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~ 146 (844)
T 3j0a_A 68 AFRNLPNLRILDLGSSKIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGK 146 (844)
T ss_dssp TTSSCTTCCEEECTTCCCC-EECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGT
T ss_pred HhcCCCCCCEEECCCCcCc-ccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhh
Confidence 3444444444444444444 133444445555555555555554333332 4455555555555555553322 34555
Q ss_pred CCCCcEEEccCCcCee
Q 037844 109 LTQLIILHLSQNSFRG 124 (126)
Q Consensus 109 ~~~L~~l~l~~n~i~~ 124 (126)
+++|++|++++|.+++
T Consensus 147 L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 147 LNSLKSIDFSSNQIFL 162 (844)
T ss_dssp CSSCCEEEEESSCCCC
T ss_pred CCCCCEEECCCCcCCe
Confidence 5566666666655543
No 58
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.63 E-value=1.8e-15 Score=106.45 Aligned_cols=111 Identities=21% Similarity=0.083 Sum_probs=71.2
Q ss_pred CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcE
Q 037844 11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKV 90 (126)
Q Consensus 11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~ 90 (126)
++++.|++++|.+.+.. +..+..+++|++|++++|.++ ...|..+..+++|++|++++|.++...+..+..+++|+.
T Consensus 32 ~~l~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 108 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLN--QDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTK 108 (477)
T ss_dssp TTCSEEECCSSCCCEEC--TTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCE
T ss_pred CCCcEEECCCCccceEC--HhHccCCCCCCEEECCCCccC-EeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCE
Confidence 45677777777776554 556666777777777777766 244566666777777777777666443344566666666
Q ss_pred EEeecCccCccchHHHhcCCCCcEEEccCCcCee
Q 037844 91 LAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRG 124 (126)
Q Consensus 91 l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~ 124 (126)
|++++|.+.+..+..+..+++|+.|++++|.+++
T Consensus 109 L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~ 142 (477)
T 2id5_A 109 LDISENKIVILLDYMFQDLYNLKSLEVGDNDLVY 142 (477)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEEECCTTCCE
T ss_pred EECCCCccccCChhHccccccCCEEECCCCccce
Confidence 6666666665555556666666666666665543
No 59
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.62 E-value=8.8e-16 Score=103.09 Aligned_cols=110 Identities=14% Similarity=0.053 Sum_probs=78.5
Q ss_pred CCceEEEEcCCCCcccccCCCccc--cccccCceeEeccCcccCcchhhhhhCC-----CCCCEEEcccCcCcCcCCccc
Q 037844 10 RNHVIKLDLPSSCLQDSINSSSGL--FKLIHLKWLILLFNKFSGFEILIKIINL-----SRLSYLNLFYSSLSGGLPVST 82 (126)
Q Consensus 10 ~~~l~~L~ls~n~l~~~~~~~~~~--~~l~~L~~L~l~~n~~~~~~~~~~~~~l-----~~L~~l~l~~~~~~~~~~~~~ 82 (126)
.+++++|++++|.+.+.. |..+ ..+++|++|++++|.+++ . |..+..+ ++|+++++++|.+.+..+..+
T Consensus 94 l~~L~~L~L~~n~l~~~~--~~~~~~~~l~~L~~L~Ls~N~l~~-~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~ 169 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTA--PPPLLEATGPDLNILNLRNVSWAT-R-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQV 169 (312)
T ss_dssp TSCCCEEEEEEEBCBSCC--CCCSSSCCSCCCSEEEEESCBCSS-S-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTC
T ss_pred cCCccEEEccCCcccchh--HHHHHHhcCCCccEEEccCCCCcc-h-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHh
Confidence 467888888888888766 5555 677888888888888873 3 5555554 778888888888876666777
Q ss_pred cCCCCCcEEEeecCccCcc--chHHH--hcCCCCcEEEccCCcCe
Q 037844 83 KYLRSLKVLAIIKCNFCSR--ITFLL--RNLTQLIILHLSQNSFR 123 (126)
Q Consensus 83 ~~l~~L~~l~l~~n~~~~~--~p~~l--~~~~~L~~l~l~~n~i~ 123 (126)
+.+++|++|++++|++.+. .+..+ ..+++|++|++++|.++
T Consensus 170 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~ 214 (312)
T 1wwl_A 170 RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGME 214 (312)
T ss_dssp CCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCC
T ss_pred ccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCc
Confidence 7777888888887776644 23333 56667777777777665
No 60
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.62 E-value=4.2e-15 Score=106.27 Aligned_cols=112 Identities=27% Similarity=0.196 Sum_probs=72.8
Q ss_pred CCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCc
Q 037844 10 RNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLK 89 (126)
Q Consensus 10 ~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~ 89 (126)
.+++++|++++|.+.+.. +..+..+++|++|++++|.+. ...+..+..+++|+++++++|.+++..+..++.+++|+
T Consensus 51 l~~L~~L~Ls~n~i~~i~--~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~ 127 (570)
T 2z63_A 51 FPELQVLDLSRCEIQTIE--DGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127 (570)
T ss_dssp CSSCCEEECTTCCCCEEC--TTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCC
T ss_pred CCCceEEECCCCcCCccC--cccccCchhCCEEeCcCCcCC-ccCHhhhcCccccccccccccccccCCCcccccccccc
Confidence 355666666666665443 445566666666666666665 23345566666666666666666543333466777777
Q ss_pred EEEeecCccCc-cchHHHhcCCCCcEEEccCCcCee
Q 037844 90 VLAIIKCNFCS-RITFLLRNLTQLIILHLSQNSFRG 124 (126)
Q Consensus 90 ~l~l~~n~~~~-~~p~~l~~~~~L~~l~l~~n~i~~ 124 (126)
+|++++|.+.+ .+|..+.++++|++|++++|.+++
T Consensus 128 ~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~ 163 (570)
T 2z63_A 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163 (570)
T ss_dssp EEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCE
T ss_pred EEecCCCccceecChhhhcccCCCCEEeCcCCccce
Confidence 88887777775 457778888888888888887764
No 61
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.62 E-value=2.2e-15 Score=105.98 Aligned_cols=112 Identities=20% Similarity=0.126 Sum_probs=63.9
Q ss_pred CCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCC
Q 037844 9 QRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSL 88 (126)
Q Consensus 9 ~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L 88 (126)
..++|++|++++|.+.+.. |..+..+++|++|++++|.+.+ ..+..+..+++|+++++++|.+.+..+..+..+++|
T Consensus 54 ~l~~L~~L~L~~n~i~~~~--~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 130 (477)
T 2id5_A 54 SFPHLEELELNENIVSAVE--PGAFNNLFNLRTLGLRSNRLKL-IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNL 130 (477)
T ss_dssp TCTTCCEEECTTSCCCEEC--TTTTTTCTTCCEEECCSSCCCS-CCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred CCCCCCEEECCCCccCEeC--hhhhhCCccCCEEECCCCcCCc-cCcccccCCCCCCEEECCCCccccCChhHccccccC
Confidence 3456777777777666555 5566666667777777666652 222334556666666666666655444455555555
Q ss_pred cEEEeecCccCccchHHHhcCCCCcEEEccCCcCe
Q 037844 89 KVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFR 123 (126)
Q Consensus 89 ~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~ 123 (126)
+.|++++|.+.+..+..+..+++|+.|++++|.++
T Consensus 131 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 165 (477)
T 2id5_A 131 KSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT 165 (477)
T ss_dssp CEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS
T ss_pred CEEECCCCccceeChhhccCCCCCCEEECCCCcCc
Confidence 55555555555444444444455555555554443
No 62
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.62 E-value=2.5e-15 Score=93.33 Aligned_cols=105 Identities=17% Similarity=0.091 Sum_probs=62.2
Q ss_pred CceEEEEcCCCCcccccCCCccccccc-cCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCc
Q 037844 11 NHVIKLDLPSSCLQDSINSSSGLFKLI-HLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLK 89 (126)
Q Consensus 11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~ 89 (126)
.++++|++++|.+. .+ +. +..+. +|++|++++|.++ .+ ..+..+++|+++++++|.+++..+..+..+++|+
T Consensus 19 ~~L~~L~l~~n~l~-~i--~~-~~~~~~~L~~L~Ls~N~l~--~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 19 VRDRELDLRGYKIP-VI--EN-LGATLDQFDAIDFSDNEIR--KL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp TSCEEEECTTSCCC-SC--CC-GGGGTTCCSEEECCSSCCC--EE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred CCceEEEeeCCCCc-hh--HH-hhhcCCCCCEEECCCCCCC--cc-cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 45667777777666 33 32 33333 6666676666665 22 4455666666666666666543223335666666
Q ss_pred EEEeecCccCccchH--HHhcCCCCcEEEccCCcCe
Q 037844 90 VLAIIKCNFCSRITF--LLRNLTQLIILHLSQNSFR 123 (126)
Q Consensus 90 ~l~l~~n~~~~~~p~--~l~~~~~L~~l~l~~n~i~ 123 (126)
.|++++|.+. .+|. .+..+++|+.+++++|+++
T Consensus 92 ~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 92 ELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp EEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred EEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC
Confidence 6666666665 4444 5566666666666666654
No 63
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.61 E-value=1.1e-15 Score=109.09 Aligned_cols=111 Identities=27% Similarity=0.215 Sum_probs=52.9
Q ss_pred CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcC-cCCccccCCCCCc
Q 037844 11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSG-GLPVSTKYLRSLK 89 (126)
Q Consensus 11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~-~~~~~~~~l~~L~ 89 (126)
+++++|++++|.+.+.. |..+..+++|++|++++|.+.+ ..+..++.+++|+++++++|.+++ ..|..++.+++|+
T Consensus 50 ~~L~~L~Ls~n~i~~~~--~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~ 126 (549)
T 2z81_A 50 ANLQVLILKSSRINTIE--GDAFYSLGSLEHLDLSDNHLSS-LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQ 126 (549)
T ss_dssp TTCCEEECTTSCCCEEC--TTTTTTCTTCCEEECTTSCCCS-CCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCC
T ss_pred CcccEEECCCCCcCccC--hhhccccccCCEEECCCCccCc-cCHHHhccCCCCcEEECCCCcccccchhhhhhccCCcc
Confidence 34444444444444333 3344444555555555555442 233334455555555555555443 2233445555555
Q ss_pred EEEeecCccCccch-HHHhcCCCCcEEEccCCcCee
Q 037844 90 VLAIIKCNFCSRIT-FLLRNLTQLIILHLSQNSFRG 124 (126)
Q Consensus 90 ~l~l~~n~~~~~~p-~~l~~~~~L~~l~l~~n~i~~ 124 (126)
.|++++|...+.+| ..+..+++|++|++++|.+++
T Consensus 127 ~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 162 (549)
T 2z81_A 127 TLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN 162 (549)
T ss_dssp EEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred EEECCCCccccccCHhhhhcccccCeeeccCCcccc
Confidence 55555555322333 345555555555555555544
No 64
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.61 E-value=3.9e-15 Score=91.65 Aligned_cols=111 Identities=26% Similarity=0.173 Sum_probs=93.7
Q ss_pred CCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcC-CccccCCCC
Q 037844 9 QRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGL-PVSTKYLRS 87 (126)
Q Consensus 9 ~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~-~~~~~~l~~ 87 (126)
..+++++|++++|.+.+. ..+..+++|++|++++|.+.+ .+|..+..+++|+++++++|.+++.. +..+..++.
T Consensus 47 ~l~~L~~L~l~~n~l~~~----~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~ 121 (168)
T 2ell_A 47 EFVNLEFLSLINVGLISV----SNLPKLPKLKKLELSENRIFG-GLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLEC 121 (168)
T ss_dssp GGGGCCEEEEESSCCCCC----SSCCCCSSCCEEEEESCCCCS-CCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSC
T ss_pred hCCCCCEEeCcCCCCCCh----hhhccCCCCCEEECcCCcCch-HHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCC
Confidence 457899999999998843 467889999999999999983 47777777999999999999998532 267889999
Q ss_pred CcEEEeecCccCccch---HHHhcCCCCcEEEccCCcCee
Q 037844 88 LKVLAIIKCNFCSRIT---FLLRNLTQLIILHLSQNSFRG 124 (126)
Q Consensus 88 L~~l~l~~n~~~~~~p---~~l~~~~~L~~l~l~~n~i~~ 124 (126)
|+.|++++|++++..+ ..+..+++|++|+++.|.+..
T Consensus 122 L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 122 LKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp CCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred CCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 9999999999995544 478899999999999997753
No 65
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.61 E-value=1.6e-15 Score=107.72 Aligned_cols=108 Identities=21% Similarity=0.257 Sum_probs=89.7
Q ss_pred CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcE
Q 037844 11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKV 90 (126)
Q Consensus 11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~ 90 (126)
+++++|++++|.+.+.. |..+..+++|++|++++|.++ ...|..+..+++|+++++++|.++ .+|.. .+++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~--~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~ 94 (520)
T 2z7x_B 21 QKTTILNISQNYISELW--TSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKH 94 (520)
T ss_dssp TTCSEEECCSSCCCCCC--HHHHTTCTTCCEEECCSSCCC-EEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSE
T ss_pred ccccEEECCCCcccccC--hhhccccccccEEecCCCccC-CcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccE
Confidence 68899999999888655 567888899999999999987 355778888999999999999887 45554 7888999
Q ss_pred EEeecCccCc-cchHHHhcCCCCcEEEccCCcCee
Q 037844 91 LAIIKCNFCS-RITFLLRNLTQLIILHLSQNSFRG 124 (126)
Q Consensus 91 l~l~~n~~~~-~~p~~l~~~~~L~~l~l~~n~i~~ 124 (126)
|++++|.+++ .+|..++.+++|++|++++|.+++
T Consensus 95 L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~ 129 (520)
T 2z7x_B 95 LDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK 129 (520)
T ss_dssp EECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG
T ss_pred EeccCCccccccchhhhccCCcceEEEecCcccch
Confidence 9999999886 467888889999999999888764
No 66
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.60 E-value=5.7e-15 Score=106.44 Aligned_cols=113 Identities=15% Similarity=0.030 Sum_probs=72.8
Q ss_pred CCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCC
Q 037844 9 QRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSL 88 (126)
Q Consensus 9 ~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L 88 (126)
..+++++|++++|.+.... |..+..+++|++|++++|.+. ...|..+..+++|+++++++|.+++..+..+..+++|
T Consensus 55 ~l~~L~~L~Ls~n~i~~~~--~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L 131 (606)
T 3t6q_A 55 RLINLTFLDLTRCQIYWIH--EDTFQSQHRLDTLVLTANPLI-FMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTL 131 (606)
T ss_dssp TCTTCSEEECTTCCCCEEC--TTTTTTCTTCCEEECTTCCCS-EECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTC
T ss_pred cCccceEEECCCCccceeC--hhhccCccccCeeeCCCCccc-ccChhhhcccccccEeeccccCcccCCcchhccCCcc
Confidence 4467777777777777665 666777777777777777776 2455666677777777777777765445556666666
Q ss_pred cEEEeecCccCccchHHHhcCCCCcEEEccCCcCee
Q 037844 89 KVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRG 124 (126)
Q Consensus 89 ~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~ 124 (126)
++|++++|.+.+..++.+..+++|++|++++|.+++
T Consensus 132 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 167 (606)
T 3t6q_A 132 ESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHY 167 (606)
T ss_dssp CEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCE
T ss_pred cEEECCCCcccccCcccccCCcccCEEEcccCcccc
Confidence 666666666664222233335666666666666554
No 67
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.60 E-value=4.4e-15 Score=89.72 Aligned_cols=107 Identities=24% Similarity=0.181 Sum_probs=90.6
Q ss_pred CCCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCc-CCccccCCC
Q 037844 8 KQRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGG-LPVSTKYLR 86 (126)
Q Consensus 8 ~~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~-~~~~~~~l~ 86 (126)
...+++++|++++|.+.+. ..+..+++|++|++++|.+++ .+|..+..+++|+++++++|.+++. .+..+..++
T Consensus 39 ~~l~~L~~L~l~~n~l~~~----~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~ 113 (149)
T 2je0_A 39 DEFEELEFLSTINVGLTSI----ANLPKLNKLKKLELSDNRVSG-GLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLE 113 (149)
T ss_dssp TTCTTCCEEECTTSCCCCC----TTCCCCTTCCEEECCSSCCCS-CTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCT
T ss_pred hhcCCCcEEECcCCCCCCc----hhhhcCCCCCEEECCCCcccc-hHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCC
Confidence 3457899999999998843 467889999999999999983 4788777899999999999999863 347788999
Q ss_pred CCcEEEeecCccCccch---HHHhcCCCCcEEEccC
Q 037844 87 SLKVLAIIKCNFCSRIT---FLLRNLTQLIILHLSQ 119 (126)
Q Consensus 87 ~L~~l~l~~n~~~~~~p---~~l~~~~~L~~l~l~~ 119 (126)
+|+.+++++|.+++..+ ..+..+++|+++++++
T Consensus 114 ~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 114 NLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 99999999999996554 4788999999999863
No 68
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.60 E-value=5.8e-15 Score=105.26 Aligned_cols=110 Identities=24% Similarity=0.135 Sum_probs=96.9
Q ss_pred CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcE
Q 037844 11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKV 90 (126)
Q Consensus 11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~ 90 (126)
+++++|++++|.+++.. |..+..+++|++|++++|.+. ...|..+..+++|+++++++|.+++..+..++.+++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 102 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIG--HGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKY 102 (549)
T ss_dssp TTCCEEECCSSCCCEEC--SSTTSSCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCE
T ss_pred CCccEEECcCCccCccC--hhhhhcCCcccEEECCCCCcC-ccChhhccccccCCEEECCCCccCccCHHHhccCCCCcE
Confidence 58999999999999776 778999999999999999998 356678899999999999999998766666899999999
Q ss_pred EEeecCccCc-cchHHHhcCCCCcEEEccCCcCe
Q 037844 91 LAIIKCNFCS-RITFLLRNLTQLIILHLSQNSFR 123 (126)
Q Consensus 91 l~l~~n~~~~-~~p~~l~~~~~L~~l~l~~n~i~ 123 (126)
|++++|.+.+ ..|..++.+++|++|++++|.+.
T Consensus 103 L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~ 136 (549)
T 2z81_A 103 LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETF 136 (549)
T ss_dssp EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSC
T ss_pred EECCCCcccccchhhhhhccCCccEEECCCCccc
Confidence 9999999986 45677889999999999999743
No 69
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.59 E-value=3.8e-15 Score=108.69 Aligned_cols=110 Identities=21% Similarity=0.155 Sum_probs=52.3
Q ss_pred CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcE
Q 037844 11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKV 90 (126)
Q Consensus 11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~ 90 (126)
+++++|++++|.+.+.. +..+..+++|++|++++|.+.+ ..|..+..+++|+++++++|.+++..+..+..+++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~ 101 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLP--AANFTRYSQLTSLDVGFNTISK-LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTE 101 (680)
T ss_dssp TTCSEEECCSSCCCCCC--GGGGGGGTTCSEEECCSSCCCC-CCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSE
T ss_pred CCCcEEECCCCCCCCcC--HHHHhCCCcCcEEECCCCccCc-cCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCE
Confidence 34555555555555333 3345555555555555555542 33444445555555555555544322223444445555
Q ss_pred EEeecCccCccchHHHhcCCCCcEEEccCCcCe
Q 037844 91 LAIIKCNFCSRITFLLRNLTQLIILHLSQNSFR 123 (126)
Q Consensus 91 l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~ 123 (126)
|++++|.+.+..|..++.+++|++|++++|.++
T Consensus 102 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 134 (680)
T 1ziw_A 102 LHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS 134 (680)
T ss_dssp EECCSSCCCCCCSCTTTTCTTCCEEECCSSCCS
T ss_pred EECCCCccCccChhHccccCCCCEEECCCCccc
Confidence 555555444333334444444444444444443
No 70
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.59 E-value=5e-15 Score=106.20 Aligned_cols=108 Identities=22% Similarity=0.230 Sum_probs=89.5
Q ss_pred CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcE
Q 037844 11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKV 90 (126)
Q Consensus 11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~ 90 (126)
+++++|++++|.+.+.. +..+..+++|++|++++|.++ ...|..+..+++|+++++++|.++ .+|.. .+++|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~--~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~ 125 (562)
T 3a79_B 52 PRTKALSLSQNSISELR--MPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRH 125 (562)
T ss_dssp TTCCEEECCSSCCCCCC--GGGTTTCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSE
T ss_pred CCcCEEECCCCCccccC--hhhhccCCCccEEECCCCCCC-cCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCE
Confidence 67899999999988655 567888999999999999987 355777888999999999999987 55655 7889999
Q ss_pred EEeecCccCc-cchHHHhcCCCCcEEEccCCcCee
Q 037844 91 LAIIKCNFCS-RITFLLRNLTQLIILHLSQNSFRG 124 (126)
Q Consensus 91 l~l~~n~~~~-~~p~~l~~~~~L~~l~l~~n~i~~ 124 (126)
|++++|.+.+ ..|..++.+++|++|++++|.+++
T Consensus 126 L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~ 160 (562)
T 3a79_B 126 LDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ 160 (562)
T ss_dssp EECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred EECCCCCccccCchHhhcccCcccEEecCCCcccc
Confidence 9999999885 345788889999999999988764
No 71
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.59 E-value=5.6e-15 Score=107.80 Aligned_cols=114 Identities=20% Similarity=0.075 Sum_probs=100.7
Q ss_pred CCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCC
Q 037844 9 QRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSL 88 (126)
Q Consensus 9 ~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L 88 (126)
..+++++|++++|.+.+.. |..+..+++|++|++++|.+++ ..+..++.+++|+++++++|.+.+..+..++.+++|
T Consensus 47 ~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 123 (680)
T 1ziw_A 47 RYSQLTSLDVGFNTISKLE--PELCQKLPMLKVLNLQHNELSQ-LSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNL 123 (680)
T ss_dssp GGTTCSEEECCSSCCCCCC--TTHHHHCTTCCEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTC
T ss_pred CCCcCcEEECCCCccCccC--HHHHhcccCcCEEECCCCccCc-cChhhhccCCCCCEEECCCCccCccChhHccccCCC
Confidence 4478999999999999777 7788999999999999999982 333468899999999999999987666789999999
Q ss_pred cEEEeecCccCccchHHHhcCCCCcEEEccCCcCeec
Q 037844 89 KVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRGR 125 (126)
Q Consensus 89 ~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~~ 125 (126)
++|++++|.+.+..|..++.+++|++|++++|.+++.
T Consensus 124 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 160 (680)
T 1ziw_A 124 ITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQAL 160 (680)
T ss_dssp CEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCB
T ss_pred CEEECCCCcccccCchhhcccccCCEEEccCCccccc
Confidence 9999999999988888888999999999999998763
No 72
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.59 E-value=9.8e-15 Score=99.33 Aligned_cols=111 Identities=21% Similarity=0.140 Sum_probs=56.0
Q ss_pred CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCC-ccccCCCCCc
Q 037844 11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLP-VSTKYLRSLK 89 (126)
Q Consensus 11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~-~~~~~l~~L~ 89 (126)
+++++|++++|.+++.. +..+..+++|++|++++|.+++ ..+..+..+++|+++++++|.+++... ..+..+++|+
T Consensus 76 ~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~ 152 (353)
T 2z80_A 76 VNLQALVLTSNGINTIE--EDSFSSLGSLEHLDLSYNYLSN-LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQ 152 (353)
T ss_dssp TTCCEEECTTSCCCEEC--TTTTTTCTTCCEEECCSSCCSS-CCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCC
T ss_pred CCCCEEECCCCccCccC--HhhcCCCCCCCEEECCCCcCCc-CCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCc
Confidence 45555555555555433 3445555555555555555541 222224555556666665555542211 2345555555
Q ss_pred EEEeecCc-cCccchHHHhcCCCCcEEEccCCcCee
Q 037844 90 VLAIIKCN-FCSRITFLLRNLTQLIILHLSQNSFRG 124 (126)
Q Consensus 90 ~l~l~~n~-~~~~~p~~l~~~~~L~~l~l~~n~i~~ 124 (126)
.|++++|. +....+..+..+++|+.+++++|.+++
T Consensus 153 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 188 (353)
T 2z80_A 153 ILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS 188 (353)
T ss_dssp EEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred EEECCCCccccccCHHHccCCCCCCEEECCCCCcCc
Confidence 55555552 343333445555555555555555543
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.58 E-value=9.4e-15 Score=103.53 Aligned_cols=109 Identities=13% Similarity=0.068 Sum_probs=69.8
Q ss_pred CCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhh-CCCCCCEEEcccCcCcCcCCccccCCCCC
Q 037844 10 RNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKII-NLSRLSYLNLFYSSLSGGLPVSTKYLRSL 88 (126)
Q Consensus 10 ~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-~l~~L~~l~l~~~~~~~~~~~~~~~l~~L 88 (126)
.++++.|++++|.+++.. |..+..+++|++|++++|.+++ ..|..+. .+++|+.|++++|.+++. + ....+++|
T Consensus 119 l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~-~~~~~l~~~l~~L~~L~Ls~N~l~~~-~-~~~~l~~L 193 (487)
T 3oja_A 119 GQGKKNIYLANNKITMLR--DLDEGCRSRVQYLDLKLNEIDT-VNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKL 193 (487)
T ss_dssp CSSCEEEECCSSCCCSGG--GBCGGGGSSEEEEECTTSCCCE-EEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTC
T ss_pred cCCCCEEECCCCCCCCCC--chhhcCCCCCCEEECCCCCCCC-cChHHHhhhCCcccEEecCCCccccc-c-ccccCCCC
Confidence 356777777777777665 5566677777777777777763 4455554 567777777777776643 2 23346666
Q ss_pred cEEEeecCccCccchHHHhcCCCCcEEEccCCcCee
Q 037844 89 KVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRG 124 (126)
Q Consensus 89 ~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~ 124 (126)
+.|++++|.+++ +|+.+..+++|+.|++++|.+++
T Consensus 194 ~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~ 228 (487)
T 3oja_A 194 KTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL 228 (487)
T ss_dssp CEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE
T ss_pred CEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc
Confidence 667776666663 33345666666666666666654
No 74
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.58 E-value=8.5e-15 Score=102.64 Aligned_cols=106 Identities=22% Similarity=0.162 Sum_probs=78.3
Q ss_pred CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcE
Q 037844 11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKV 90 (126)
Q Consensus 11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~ 90 (126)
+++++|++++|.+.... +..+..+++|++|++++|.+. ...+..+..+++|++|++++|.++...+..+..+++|+.
T Consensus 75 ~~l~~L~L~~n~i~~~~--~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 151 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQ--ADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRE 151 (452)
T ss_dssp TTCSEEECCSSCCCEEC--TTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCE
T ss_pred CCccEEECcCCcCceEC--HHHcCCCCCCCEEECCCCccC-CcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCE
Confidence 57888888888888766 677888888888888888887 355567778888888888888887555556777888888
Q ss_pred EEeecCccCccchHHHhcCCCCcEEEccC
Q 037844 91 LAIIKCNFCSRITFLLRNLTQLIILHLSQ 119 (126)
Q Consensus 91 l~l~~n~~~~~~p~~l~~~~~L~~l~l~~ 119 (126)
|++++|.+....+..+..+++|+.|++++
T Consensus 152 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 180 (452)
T 3zyi_A 152 LWLRNNPIESIPSYAFNRVPSLMRLDLGE 180 (452)
T ss_dssp EECCSCCCCEECTTTTTTCTTCCEEECCC
T ss_pred EECCCCCcceeCHhHHhcCCcccEEeCCC
Confidence 88888887744443455555555555554
No 75
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.58 E-value=1.7e-14 Score=102.41 Aligned_cols=113 Identities=21% Similarity=0.269 Sum_probs=79.8
Q ss_pred CCCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCc-chhhhhhCCCCCCEEEcccCcCcCcCCcc-ccCC
Q 037844 8 KQRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGF-EILIKIINLSRLSYLNLFYSSLSGGLPVS-TKYL 85 (126)
Q Consensus 8 ~~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~-~~~l 85 (126)
...+++++|++++|.+.+.. |..+..+++|++|++++|.+.+. .+|..+..+++|+++++++|.+.+.+|.. +..+
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l 398 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTV--FENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWT 398 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTT--TTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCC
T ss_pred hhCCcccEEEeECCccChhh--hhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccC
Confidence 45578899999999988767 77888889999999999988720 34566788888999999988887645543 4444
Q ss_pred CC----------------------CcEEEeecCccCccchHHHhcCCCCcEEEccCCcCe
Q 037844 86 RS----------------------LKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFR 123 (126)
Q Consensus 86 ~~----------------------L~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~ 123 (126)
+. |+.|++++|.++ .+|..+..+++|+++++++|+++
T Consensus 399 ~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~ 457 (520)
T 2z7x_B 399 KSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK 457 (520)
T ss_dssp TTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC
T ss_pred ccCCEEECcCCCCCcchhhhhcccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC
Confidence 44 445555555554 45555556667777777776665
No 76
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.58 E-value=1.5e-14 Score=97.60 Aligned_cols=86 Identities=20% Similarity=0.112 Sum_probs=54.7
Q ss_pred ccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcEEEeecCccCccchHHHhcCCCCcEEE
Q 037844 37 IHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKVLAIIKCNFCSRITFLLRNLTQLIILH 116 (126)
Q Consensus 37 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~l~~~~~L~~l~ 116 (126)
++|++|++++|.+. ...+..+..+++|+.+++++|.+++..+..+..+++|+.|++++|.++ .+|..+..+++|++++
T Consensus 192 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~ 269 (330)
T 1xku_A 192 PSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVY 269 (330)
T ss_dssp TTCSEEECTTSCCC-EECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEE
T ss_pred ccCCEEECCCCcCC-ccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEE
Confidence 45555555566555 233455666667777777777666555555666667777777777666 5666666666777777
Q ss_pred ccCCcCee
Q 037844 117 LSQNSFRG 124 (126)
Q Consensus 117 l~~n~i~~ 124 (126)
+++|++++
T Consensus 270 l~~N~i~~ 277 (330)
T 1xku_A 270 LHNNNISA 277 (330)
T ss_dssp CCSSCCCC
T ss_pred CCCCcCCc
Confidence 77776654
No 77
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.57 E-value=6.1e-15 Score=91.54 Aligned_cols=105 Identities=21% Similarity=0.238 Sum_probs=89.2
Q ss_pred CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhh-hhhCCCCCCEEEcccCcCcCcCCc--cccCCCC
Q 037844 11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILI-KIINLSRLSYLNLFYSSLSGGLPV--STKYLRS 87 (126)
Q Consensus 11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~l~~L~~l~l~~~~~~~~~~~--~~~~l~~ 87 (126)
++++.|++++|.+++ + ..+..+++|++|++++|.++ .+|+ .+..+++|+++++++|.++ ..|. .+..+++
T Consensus 42 ~~L~~L~Ls~N~l~~-~---~~l~~l~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~ 114 (176)
T 1a9n_A 42 DQFDAIDFSDNEIRK-L---DGFPLLRRLKTLLVNNNRIC--RIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKS 114 (176)
T ss_dssp TCCSEEECCSSCCCE-E---CCCCCCSSCCEEECCSSCCC--EECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTT
T ss_pred CCCCEEECCCCCCCc-c---cccccCCCCCEEECCCCccc--ccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCC
Confidence 489999999999985 3 36788999999999999998 3454 4488999999999999996 4555 6888999
Q ss_pred CcEEEeecCccCccchHH----HhcCCCCcEEEccCCcCe
Q 037844 88 LKVLAIIKCNFCSRITFL----LRNLTQLIILHLSQNSFR 123 (126)
Q Consensus 88 L~~l~l~~n~~~~~~p~~----l~~~~~L~~l~l~~n~i~ 123 (126)
|+.+++++|++. .+|.. +..+++|+++|++.|.+.
T Consensus 115 L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 115 LTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 999999999998 55664 889999999999988653
No 78
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.57 E-value=3.5e-14 Score=94.59 Aligned_cols=102 Identities=28% Similarity=0.288 Sum_probs=49.3
Q ss_pred CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcE
Q 037844 11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKV 90 (126)
Q Consensus 11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~ 90 (126)
+++++|++++|.+.+.. . +..+++|++|++++|.+. .++ .+..+++|+++++++|.+++. +.+..++.|+.
T Consensus 68 ~~L~~L~L~~n~l~~~~---~-l~~l~~L~~L~l~~n~l~--~~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~ 138 (291)
T 1h6t_A 68 PNVTKLFLNGNKLTDIK---P-LANLKNLGWLFLDENKVK--DLS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLES 138 (291)
T ss_dssp TTCCEEECCSSCCCCCG---G-GTTCTTCCEEECCSSCCC--CGG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCE
T ss_pred CCCCEEEccCCccCCCc---c-cccCCCCCEEECCCCcCC--CCh-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCE
Confidence 55666666666655332 2 455555566665555554 122 244555555555555555421 23444444444
Q ss_pred EEeecCccCccchHHHhcCCCCcEEEccCCcCe
Q 037844 91 LAIIKCNFCSRITFLLRNLTQLIILHLSQNSFR 123 (126)
Q Consensus 91 l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~ 123 (126)
|++++|.+++. ..+..+++|+.|++++|.++
T Consensus 139 L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~ 169 (291)
T 1h6t_A 139 LYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS 169 (291)
T ss_dssp EECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred EEccCCcCCcc--hhhccCCCCCEEEccCCccc
Confidence 44444444422 23344444444444444443
No 79
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.57 E-value=1.9e-14 Score=100.62 Aligned_cols=106 Identities=23% Similarity=0.169 Sum_probs=77.9
Q ss_pred CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcE
Q 037844 11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKV 90 (126)
Q Consensus 11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~ 90 (126)
++++.|++++|.+.... +..+..+++|++|++++|.+. ...+..+..+++|++|++++|.++...+..+..+++|+.
T Consensus 64 ~~l~~L~L~~n~i~~~~--~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 140 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIK--VNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKE 140 (440)
T ss_dssp TTCSEEECCSCCCCEEC--TTTTSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCE
T ss_pred CCCcEEEccCCcCCeeC--HHHhhCCCCCCEEECCCCcCC-ccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCce
Confidence 56788888888888665 677788888888888888887 345566778888888888888887555556777888888
Q ss_pred EEeecCccCccchHHHhcCCCCcEEEccC
Q 037844 91 LAIIKCNFCSRITFLLRNLTQLIILHLSQ 119 (126)
Q Consensus 91 l~l~~n~~~~~~p~~l~~~~~L~~l~l~~ 119 (126)
|++++|.+....+..+..+++|+.|++++
T Consensus 141 L~L~~N~i~~~~~~~~~~l~~L~~L~l~~ 169 (440)
T 3zyj_A 141 LWLRNNPIESIPSYAFNRIPSLRRLDLGE 169 (440)
T ss_dssp EECCSCCCCEECTTTTTTCTTCCEEECCC
T ss_pred eeCCCCcccccCHHHhhhCcccCEeCCCC
Confidence 88888877754444555556666666655
No 80
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.57 E-value=2.9e-15 Score=112.27 Aligned_cols=111 Identities=16% Similarity=0.117 Sum_probs=89.3
Q ss_pred CCCceEEEEcCCCCccc-----------------ccCCCcccc--ccccCceeEeccCcccCcchhhhhhCCCCCCEEEc
Q 037844 9 QRNHVIKLDLPSSCLQD-----------------SINSSSGLF--KLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNL 69 (126)
Q Consensus 9 ~~~~l~~L~ls~n~l~~-----------------~~~~~~~~~--~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l 69 (126)
..++|++|++++|.+++ .+ |..+. .+++|++|++++|.+.+ .+|..+..+++|+.|++
T Consensus 446 ~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i--P~~l~f~~L~~L~~L~Ls~N~l~~-~iP~~l~~L~~L~~L~L 522 (876)
T 4ecn_A 446 RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE--NEELSWSNLKDLTDVELYNCPNMT-QLPDFLYDLPELQSLNI 522 (876)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT--TSCCCGGGCTTCCEEEEESCTTCC-SCCGGGGGCSSCCEEEC
T ss_pred cCCCCCEEECcCCcCCCCcccccccccccccccccC--ChhhhhccCCCCCEEECcCCCCCc-cChHHHhCCCCCCEEEC
Confidence 44678889999998887 26 77776 88889999999888774 67888888888999999
Q ss_pred ccCc-CcC-cCCccccCCC-------CCcEEEeecCccCccchH--HHhcCCCCcEEEccCCcCe
Q 037844 70 FYSS-LSG-GLPVSTKYLR-------SLKVLAIIKCNFCSRITF--LLRNLTQLIILHLSQNSFR 123 (126)
Q Consensus 70 ~~~~-~~~-~~~~~~~~l~-------~L~~l~l~~n~~~~~~p~--~l~~~~~L~~l~l~~n~i~ 123 (126)
++|+ +++ .+|..++.++ +|+.|++++|.+. .+|. .+..+++|+.|++++|.++
T Consensus 523 s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~ 586 (876)
T 4ecn_A 523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR 586 (876)
T ss_dssp TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC
T ss_pred cCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc
Confidence 8887 776 6676555544 8888888888888 7787 7888888888888888776
No 81
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.57 E-value=2.1e-14 Score=107.33 Aligned_cols=114 Identities=25% Similarity=0.121 Sum_probs=90.3
Q ss_pred CCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCC
Q 037844 9 QRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSL 88 (126)
Q Consensus 9 ~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L 88 (126)
..+++++|++++|.++... +..+..+++|++|++++|...+...|..+..+++|++|++++|.+.+..|..+..+++|
T Consensus 22 lp~~l~~LdLs~N~i~~i~--~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L 99 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVT--ASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHL 99 (844)
T ss_dssp SCTTCCEEEEESCCCCEEC--SSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSC
T ss_pred CCCCcCEEECCCCcCCccC--hhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCccc
Confidence 3467888888888888766 67788888888888888855432236678888888888888888887778888888888
Q ss_pred cEEEeecCccCccchHH--HhcCCCCcEEEccCCcCee
Q 037844 89 KVLAIIKCNFCSRITFL--LRNLTQLIILHLSQNSFRG 124 (126)
Q Consensus 89 ~~l~l~~n~~~~~~p~~--l~~~~~L~~l~l~~n~i~~ 124 (126)
++|++++|.+.+..|.. +..+++|++|++++|.+++
T Consensus 100 ~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~ 137 (844)
T 3j0a_A 100 FELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRS 137 (844)
T ss_dssp CCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCC
T ss_pred CEeeCcCCCCCcccccCccccccCCCCEEECCCCcccc
Confidence 88888888888766654 7788888888888888765
No 82
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.56 E-value=1.6e-14 Score=100.97 Aligned_cols=109 Identities=24% Similarity=0.152 Sum_probs=72.2
Q ss_pred CCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCc
Q 037844 10 RNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLK 89 (126)
Q Consensus 10 ~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~ 89 (126)
.++|++|++++|.++ .+ | .+..+++|++|++++|.++ ...+..+..+++|+.+++++|.+++..+..+..+++|+
T Consensus 184 l~~L~~L~L~~n~l~-~~--~-~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 258 (440)
T 3zyj_A 184 LSNLRYLNLAMCNLR-EI--P-NLTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLV 258 (440)
T ss_dssp CSSCCEEECTTSCCS-SC--C-CCTTCSSCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCC
T ss_pred ccccCeecCCCCcCc-cc--c-ccCCCcccCEEECCCCccC-ccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCC
Confidence 355666666666666 33 3 3556666777777777766 24456666677777777777777666666667777777
Q ss_pred EEEeecCccCccchHHHhcCCCCcEEEccCCcCe
Q 037844 90 VLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFR 123 (126)
Q Consensus 90 ~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~ 123 (126)
.|++++|++++..+..+..+++|+.+++++|++.
T Consensus 259 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 259 EINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp EEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred EEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 7777777777555555666777777777777653
No 83
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.56 E-value=1.4e-14 Score=93.73 Aligned_cols=85 Identities=19% Similarity=0.149 Sum_probs=43.7
Q ss_pred ceEEEEcCCCCcccccCCCccccccccCceeEeccCc-ccCcchhhhhhCCCCCCEEEccc-CcCcCcCCccccCCCCCc
Q 037844 12 HVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNK-FSGFEILIKIINLSRLSYLNLFY-SSLSGGLPVSTKYLRSLK 89 (126)
Q Consensus 12 ~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~l~~L~~l~l~~-~~~~~~~~~~~~~l~~L~ 89 (126)
++++|++++|+++... +..+..+++|++|++++|. ++ ...+..+..+++|+++++++ |.+++..+..+..+++|+
T Consensus 32 ~l~~L~l~~n~l~~i~--~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~ 108 (239)
T 2xwt_C 32 STQTLKLIETHLRTIP--SHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK 108 (239)
T ss_dssp TCCEEEEESCCCSEEC--TTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred cccEEEEeCCcceEEC--HHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence 4555666666555333 3345555556666666554 44 12223445555555555555 555533334445555555
Q ss_pred EEEeecCccC
Q 037844 90 VLAIIKCNFC 99 (126)
Q Consensus 90 ~l~l~~n~~~ 99 (126)
.|++++|.++
T Consensus 109 ~L~l~~n~l~ 118 (239)
T 2xwt_C 109 FLGIFNTGLK 118 (239)
T ss_dssp EEEEEEECCC
T ss_pred EEeCCCCCCc
Confidence 5555555444
No 84
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.56 E-value=3.6e-14 Score=93.35 Aligned_cols=102 Identities=27% Similarity=0.273 Sum_probs=50.8
Q ss_pred CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcE
Q 037844 11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKV 90 (126)
Q Consensus 11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~ 90 (126)
+++++|++++|++.+. ++ +..+++|++|++++|.++ .++. +.. ++|+.+++++|.+++. +.+..+++|+.
T Consensus 63 ~~L~~L~L~~N~i~~~---~~-l~~l~~L~~L~L~~N~l~--~l~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~ 132 (263)
T 1xeu_A 63 TNLKELHLSHNQISDL---SP-LKDLTKLEELSVNRNRLK--NLNG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEI 132 (263)
T ss_dssp TTCCEEECCSSCCCCC---GG-GTTCSSCCEEECCSSCCS--CCTT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCE
T ss_pred CCCCEEECCCCccCCC---hh-hccCCCCCEEECCCCccC--CcCc-ccc-CcccEEEccCCccCCC--hhhcCcccccE
Confidence 4455555555555432 22 444555555555555554 1222 111 4444555555544421 23555666666
Q ss_pred EEeecCccCccchHHHhcCCCCcEEEccCCcCee
Q 037844 91 LAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRG 124 (126)
Q Consensus 91 l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~ 124 (126)
|++++|++++ ++ .+..+++|+.|++++|.+++
T Consensus 133 L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 133 LSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp EECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCB
T ss_pred EECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcc
Confidence 6666666653 23 45556666666666666554
No 85
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.56 E-value=1e-14 Score=99.25 Aligned_cols=109 Identities=27% Similarity=0.258 Sum_probs=91.2
Q ss_pred CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcE
Q 037844 11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKV 90 (126)
Q Consensus 11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~ 90 (126)
+++++|++++|.+++.. +..+..+++|++|++++|.++ ...+..+..+++|+++++++|.+++..+..+..+++|++
T Consensus 52 ~~L~~L~l~~n~i~~~~--~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 128 (353)
T 2z80_A 52 EAVKSLDLSNNRITYIS--NSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTF 128 (353)
T ss_dssp TTCCEEECTTSCCCEEC--TTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSE
T ss_pred ccCcEEECCCCcCcccC--HHHhccCCCCCEEECCCCccC-ccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCE
Confidence 58999999999998654 557889999999999999998 355667889999999999999998544444788999999
Q ss_pred EEeecCccCccchH--HHhcCCCCcEEEccCCc-Ce
Q 037844 91 LAIIKCNFCSRITF--LLRNLTQLIILHLSQNS-FR 123 (126)
Q Consensus 91 l~l~~n~~~~~~p~--~l~~~~~L~~l~l~~n~-i~ 123 (126)
|++++|++. .+|. .+..+++|++|++++|. ++
T Consensus 129 L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~ 163 (353)
T 2z80_A 129 LNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFT 163 (353)
T ss_dssp EECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCC
T ss_pred EECCCCCCc-ccCchhhhccCCCCcEEECCCCcccc
Confidence 999999998 4554 68889999999999984 44
No 86
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.56 E-value=3.7e-14 Score=95.75 Aligned_cols=107 Identities=21% Similarity=0.168 Sum_probs=90.7
Q ss_pred CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcE
Q 037844 11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKV 90 (126)
Q Consensus 11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~ 90 (126)
+++++|++++|.+.... +..+..+++|++|++++|.++ ...|..+..+++|+++++++|.++ .+|..+. ++|++
T Consensus 54 ~~l~~L~l~~n~i~~~~--~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~ 127 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELR--KDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVE 127 (332)
T ss_dssp TTCCEEECCSSCCCEEC--TTTTTTCTTCCEEECCSSCCC-EECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCE
T ss_pred CCCeEEECCCCcCCccC--HhHhhCCCCCcEEECCCCccC-ccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCE
Confidence 57899999999998665 667889999999999999998 355788899999999999999987 5565544 78999
Q ss_pred EEeecCccCccchHHHhcCCCCcEEEccCCcCe
Q 037844 91 LAIIKCNFCSRITFLLRNLTQLIILHLSQNSFR 123 (126)
Q Consensus 91 l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~ 123 (126)
|++++|.+.+..+..+..+++|+.|++++|.++
T Consensus 128 L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 160 (332)
T 2ft3_A 128 LRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE 160 (332)
T ss_dssp EECCSSCCCCCCSGGGSSCSSCCEEECCSCCCB
T ss_pred EECCCCccCccCHhHhCCCccCCEEECCCCccc
Confidence 999999998665667888999999999999885
No 87
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.56 E-value=4.4e-14 Score=87.63 Aligned_cols=106 Identities=22% Similarity=0.142 Sum_probs=88.5
Q ss_pred eEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcEEE
Q 037844 13 VIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKVLA 92 (126)
Q Consensus 13 l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ 92 (126)
.+.++++++.+. .+ |..+ .+++++|++++|.+.+ ..+..+..+++|+++++++|.+++..+..+..+++|+.|+
T Consensus 9 ~~~l~~~~~~l~-~~--p~~~--~~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 82 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SV--PTGI--PSSATRLELESNKLQS-LPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILY 82 (177)
T ss_dssp TTEEECCSSCCS-SC--CTTC--CTTCSEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCEEEecCCCCc-cC--CCCC--CCCCcEEEeCCCcccE-eCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEE
Confidence 367899999888 45 5443 3689999999999983 4455578899999999999999866556678999999999
Q ss_pred eecCccCccchHHHhcCCCCcEEEccCCcCee
Q 037844 93 IIKCNFCSRITFLLRNLTQLIILHLSQNSFRG 124 (126)
Q Consensus 93 l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~ 124 (126)
+++|.+++..+..+..+++|++|++++|.+++
T Consensus 83 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 114 (177)
T 2o6r_A 83 LHENKLQSLPNGVFDKLTQLKELALDTNQLKS 114 (177)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCCccccCHHHhhCCcccCEEECcCCcceE
Confidence 99999996666678899999999999999875
No 88
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.56 E-value=6.2e-14 Score=94.05 Aligned_cols=84 Identities=27% Similarity=0.314 Sum_probs=36.8
Q ss_pred ccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcEEEeecCccCccchHHHhcCCCC
Q 037844 33 LFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKVLAIIKCNFCSRITFLLRNLTQL 112 (126)
Q Consensus 33 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~l~~~~~L 112 (126)
+..+++|++|++++|.+.+ ++. +..+++|+.+++++|.+++. +. +..+++|+.|++++|.+.+ ++. +..+++|
T Consensus 125 l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L 197 (308)
T 1h6u_A 125 LAGLSNLQVLYLDLNQITN--ISP-LAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKISD-ISP-LASLPNL 197 (308)
T ss_dssp GTTCTTCCEEECCSSCCCC--CGG-GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-CGG-GGGCTTC
T ss_pred hcCCCCCCEEECCCCccCc--Ccc-ccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccCc-Chh-hcCCCCC
Confidence 3444444444444444431 222 44444444555544444421 11 4444445555555554442 221 4444455
Q ss_pred cEEEccCCcCe
Q 037844 113 IILHLSQNSFR 123 (126)
Q Consensus 113 ~~l~l~~n~i~ 123 (126)
++|++++|.++
T Consensus 198 ~~L~L~~N~l~ 208 (308)
T 1h6u_A 198 IEVHLKNNQIS 208 (308)
T ss_dssp CEEECTTSCCC
T ss_pred CEEEccCCccC
Confidence 55555555444
No 89
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.55 E-value=7.4e-14 Score=93.03 Aligned_cols=105 Identities=27% Similarity=0.251 Sum_probs=64.2
Q ss_pred CCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCC
Q 037844 9 QRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSL 88 (126)
Q Consensus 9 ~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L 88 (126)
..+++++|++++|.+.+ . +.+..+++|++|++++|.+.+ + +.+..+++|+.+++++|.+++. ..+..+++|
T Consensus 88 ~l~~L~~L~l~~n~l~~-~---~~l~~l~~L~~L~L~~n~i~~--~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L 158 (291)
T 1h6t_A 88 NLKNLGWLFLDENKVKD-L---SSLKDLKKLKSLSLEHNGISD--I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKL 158 (291)
T ss_dssp TCTTCCEEECCSSCCCC-G---GGGTTCTTCCEEECTTSCCCC--C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTC
T ss_pred cCCCCCEEECCCCcCCC-C---hhhccCCCCCEEECCCCcCCC--C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCC
Confidence 34567777777777663 3 235666777777777777652 2 3455666677777766666533 445666666
Q ss_pred cEEEeecCccCccchHHHhcCCCCcEEEccCCcCee
Q 037844 89 KVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRG 124 (126)
Q Consensus 89 ~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~ 124 (126)
+.|++++|.+.+..+ +..+++|+.|++++|.+++
T Consensus 159 ~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~ 192 (291)
T 1h6t_A 159 DTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 192 (291)
T ss_dssp SEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred CEEEccCCccccchh--hcCCCccCEEECCCCcCCC
Confidence 666666666663322 5566666666666666543
No 90
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.55 E-value=7.6e-14 Score=94.51 Aligned_cols=107 Identities=25% Similarity=0.288 Sum_probs=78.0
Q ss_pred CCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCC
Q 037844 9 QRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSL 88 (126)
Q Consensus 9 ~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L 88 (126)
..+++++|++++|.+.+. +. +..+++|++|++++|.+.+ + +.+..+++|+.+++++|.+++. +.+..+++|
T Consensus 219 ~~~~L~~L~l~~n~l~~~---~~-~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L 289 (347)
T 4fmz_A 219 NMTRLNSLKIGNNKITDL---SP-LANLSQLTWLEIGTNQISD--I-NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQL 289 (347)
T ss_dssp GCTTCCEEECCSSCCCCC---GG-GTTCTTCCEEECCSSCCCC--C-GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTC
T ss_pred cCCcCCEEEccCCccCCC---cc-hhcCCCCCEEECCCCccCC--C-hhHhcCCCcCEEEccCCccCCC--hhhcCCCCC
Confidence 346777888888877743 22 6677778888888887762 3 3466777888888888877643 446777888
Q ss_pred cEEEeecCccCccchHHHhcCCCCcEEEccCCcCee
Q 037844 89 KVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRG 124 (126)
Q Consensus 89 ~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~ 124 (126)
+.|++++|.+.+..+..+..+++|+++++++|++++
T Consensus 290 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 325 (347)
T 4fmz_A 290 NSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD 325 (347)
T ss_dssp SEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCC
T ss_pred CEEECcCCcCCCcChhHhhccccCCEEEccCCcccc
Confidence 888888888877777777788888888888887765
No 91
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.55 E-value=6.5e-14 Score=94.43 Aligned_cols=107 Identities=23% Similarity=0.278 Sum_probs=80.3
Q ss_pred CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcE
Q 037844 11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKV 90 (126)
Q Consensus 11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~ 90 (126)
+.+++|++++|.+++.. +..+..+++|++|++++|.+++ ..|..+..+++|+++++++|.++ .+|..+. +.|+.
T Consensus 52 ~~l~~L~L~~n~i~~~~--~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~ 125 (330)
T 1xku_A 52 PDTALLDLQNNKITEIK--DGDFKNLKNLHTLILINNKISK-ISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQE 125 (330)
T ss_dssp TTCCEEECCSSCCCCBC--TTTTTTCTTCCEEECCSSCCCC-BCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCE
T ss_pred CCCeEEECCCCcCCEeC--hhhhccCCCCCEEECCCCcCCe-eCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccE
Confidence 57888999999888655 5578888999999999999873 55778888899999999998886 4454433 56777
Q ss_pred EEeecCccCccchHHHhcCCCCcEEEccCCcCe
Q 037844 91 LAIIKCNFCSRITFLLRNLTQLIILHLSQNSFR 123 (126)
Q Consensus 91 l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~ 123 (126)
|++++|.+.+..+..+..+++|+.+++++|.+.
T Consensus 126 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 158 (330)
T 1xku_A 126 LRVHENEITKVRKSVFNGLNQMIVVELGTNPLK 158 (330)
T ss_dssp EECCSSCCCBBCHHHHTTCTTCCEEECCSSCCC
T ss_pred EECCCCcccccCHhHhcCCccccEEECCCCcCC
Confidence 777777777555556666677777777766654
No 92
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.55 E-value=3.4e-14 Score=99.59 Aligned_cols=112 Identities=19% Similarity=0.088 Sum_probs=70.7
Q ss_pred CCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCC
Q 037844 9 QRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSL 88 (126)
Q Consensus 9 ~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L 88 (126)
..++|++|++++|.+.+.. +..+..+++|++|++++|.++ ...+..+..+++|++|++++|.+....+..+..+++|
T Consensus 97 ~l~~L~~L~Ls~n~i~~~~--~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 173 (452)
T 3zyi_A 97 HLHHLEVLQLGRNSIRQIE--VGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSL 173 (452)
T ss_dssp TCTTCCEEECCSSCCCEEC--TTTTTTCTTCCEEECCSSCCS-BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTC
T ss_pred CCCCCCEEECCCCccCCcC--hhhccCcccCCEEECCCCcCC-ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcc
Confidence 4467888888888888665 667778888888888888887 2334446778888888888887764444445555666
Q ss_pred cEEEeecCccCccchH-HHhcCCCCcEEEccCCcCe
Q 037844 89 KVLAIIKCNFCSRITF-LLRNLTQLIILHLSQNSFR 123 (126)
Q Consensus 89 ~~l~l~~n~~~~~~p~-~l~~~~~L~~l~l~~n~i~ 123 (126)
+.|++++|...+.++. .+..+++|++|++++|.++
T Consensus 174 ~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~ 209 (452)
T 3zyi_A 174 MRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK 209 (452)
T ss_dssp CEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred cEEeCCCCCCccccChhhccCCCCCCEEECCCCccc
Confidence 6666655332222222 3444445555555444443
No 93
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.54 E-value=1.5e-14 Score=99.52 Aligned_cols=113 Identities=14% Similarity=0.064 Sum_probs=95.2
Q ss_pred CCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCc
Q 037844 10 RNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLK 89 (126)
Q Consensus 10 ~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~ 89 (126)
.++++.|++++|.+.... +..+..+++|++|++++|.+. ...+..+..+++|+++++++|.+++..|..+..++.|+
T Consensus 44 l~~l~~l~l~~~~l~~l~--~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLP--AALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 120 (390)
T ss_dssp GCCCSEEEEESCEESEEC--THHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cCCceEEEecCCchhhCC--hhHhcccccCcEEECCCCccc-ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence 378899999999988432 344678999999999999998 34556789999999999999999977777889999999
Q ss_pred EEEeecCccCccchHHHhcCCCCcEEEccCCcCeec
Q 037844 90 VLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRGR 125 (126)
Q Consensus 90 ~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~~ 125 (126)
+|++++|.+....+..+..+++|++|++++|.+++.
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~ 156 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI 156 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC
T ss_pred EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCcc
Confidence 999999999944334468899999999999998753
No 94
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.54 E-value=4.2e-14 Score=95.08 Aligned_cols=106 Identities=19% Similarity=0.145 Sum_probs=52.2
Q ss_pred CceEEEEcCCCCcccccCCCccc-cccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCc
Q 037844 11 NHVIKLDLPSSCLQDSINSSSGL-FKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLK 89 (126)
Q Consensus 11 ~~l~~L~ls~n~l~~~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~ 89 (126)
+++++|++++|.+.+.. +..+ ..+++|++|++++|.++ .++. ...+++|+.+++++|.+++ .|..+..+++|+
T Consensus 144 ~~L~~L~Ls~N~l~~~~--~~~~~~~l~~L~~L~L~~N~l~--~~~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~ 217 (317)
T 3o53_A 144 SRVQYLDLKLNEIDTVN--FAELAASSDTLEHLNLQYNFIY--DVKG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVT 217 (317)
T ss_dssp SSEEEEECTTSCCCEEE--GGGGGGGTTTCCEEECTTSCCC--EEEC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCS
T ss_pred CCCCEEECCCCCCCccc--HHHHhhccCcCCEEECCCCcCc--cccc-ccccccCCEEECCCCcCCc-chhhhcccCccc
Confidence 34444444444444332 2222 23444455555554444 1222 2234555555555555542 333355555666
Q ss_pred EEEeecCccCccchHHHhcCCCCcEEEccCCcCe
Q 037844 90 VLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFR 123 (126)
Q Consensus 90 ~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~ 123 (126)
.|++++|.++ .+|..+..+++|+.+++++|+++
T Consensus 218 ~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 218 WISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp EEECTTSCCC-EECTTCCCCTTCCEEECTTCCCB
T ss_pred EEECcCCccc-chhhHhhcCCCCCEEEccCCCcc
Confidence 6666666655 44555555566666666666554
No 95
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.54 E-value=4.2e-14 Score=95.96 Aligned_cols=104 Identities=21% Similarity=0.118 Sum_probs=87.0
Q ss_pred EEEEcCCC-CcccccCCCccccccccCceeEecc-CcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcEE
Q 037844 14 IKLDLPSS-CLQDSINSSSGLFKLIHLKWLILLF-NKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKVL 91 (126)
Q Consensus 14 ~~L~ls~n-~l~~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l 91 (126)
..++.+++ .++ .+ |. +..+.+|++|+|++ |.+. ...+..+..+++|+.|++++|++++..|..|..+++|+.|
T Consensus 11 ~~v~~~~~n~l~-~i--p~-l~~~~~L~~L~l~~~n~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L 85 (347)
T 2ifg_A 11 SGLRCTRDGALD-SL--HH-LPGAENLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL 85 (347)
T ss_dssp SCEECCSSCCCT-TT--TT-SCSCSCCSEEECCSCSSCC-EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEE
T ss_pred CEEEcCCCCCCC-cc--CC-CCCCCCeeEEEccCCCCCC-CcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEE
Confidence 35688887 888 56 77 88999999999996 9998 3455678899999999999999998878888999999999
Q ss_pred EeecCccCccchHHHhcCCCCcEEEccCCcCe
Q 037844 92 AIIKCNFCSRITFLLRNLTQLIILHLSQNSFR 123 (126)
Q Consensus 92 ~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~ 123 (126)
+|++|++++..+..+..++ |+.|++.+|++.
T Consensus 86 ~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 86 NLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp ECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred eCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 9999999954444455444 999999999886
No 96
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.54 E-value=4e-14 Score=95.86 Aligned_cols=107 Identities=21% Similarity=0.194 Sum_probs=91.1
Q ss_pred CCCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCC
Q 037844 8 KQRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRS 87 (126)
Q Consensus 8 ~~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~ 87 (126)
...+++++|++++|.+.. . +.+..+++|++|++++|.+.+ + +.+..+++|+.+++++|.+.+..+..+..+++
T Consensus 240 ~~l~~L~~L~l~~n~l~~-~---~~~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 312 (347)
T 4fmz_A 240 ANLSQLTWLEIGTNQISD-I---NAVKDLTKLKMLNVGSNQISD--I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTN 312 (347)
T ss_dssp TTCTTCCEEECCSSCCCC-C---GGGTTCTTCCEEECCSSCCCC--C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTT
T ss_pred hcCCCCCEEECCCCccCC-C---hhHhcCCCcCEEEccCCccCC--C-hhhcCCCCCCEEECcCCcCCCcChhHhhcccc
Confidence 455789999999999884 3 457889999999999999983 4 45788999999999999998777788899999
Q ss_pred CcEEEeecCccCccchHHHhcCCCCcEEEccCCcCe
Q 037844 88 LKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFR 123 (126)
Q Consensus 88 L~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~ 123 (126)
|+.+++++|++++..| +..+++|+.+++++|.|+
T Consensus 313 L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 313 LTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred CCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 9999999999996555 888999999999999986
No 97
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.54 E-value=9.3e-15 Score=98.08 Aligned_cols=111 Identities=23% Similarity=0.148 Sum_probs=58.9
Q ss_pred CCceEEEEcCCCCcccccCCCcccccc-----ccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCc--CCccc
Q 037844 10 RNHVIKLDLPSSCLQDSINSSSGLFKL-----IHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGG--LPVST 82 (126)
Q Consensus 10 ~~~l~~L~ls~n~l~~~~~~~~~~~~l-----~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~--~~~~~ 82 (126)
.+++++|++++|.+.+. |..+..+ ++|++|++++|.+.+ ..+..+..+++|+++++++|++.+. .+..+
T Consensus 120 l~~L~~L~Ls~N~l~~~---~~~~~~l~~~~~~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 195 (312)
T 1wwl_A 120 GPDLNILNLRNVSWATR---DAWLAELQQWLKPGLKVLSIAQAHSLN-FSCEQVRVFPALSTLDLSDNPELGERGLISAL 195 (312)
T ss_dssp SCCCSEEEEESCBCSSS---SSHHHHHHTTCCTTCCEEEEESCSCCC-CCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred CCCccEEEccCCCCcch---hHHHHHHHHhhcCCCcEEEeeCCCCcc-chHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence 35666666666666532 3444444 566666666666652 3345555666666666666654432 12222
Q ss_pred --cCCCCCcEEEeecCccCc--cch-HHHhcCCCCcEEEccCCcCee
Q 037844 83 --KYLRSLKVLAIIKCNFCS--RIT-FLLRNLTQLIILHLSQNSFRG 124 (126)
Q Consensus 83 --~~l~~L~~l~l~~n~~~~--~~p-~~l~~~~~L~~l~l~~n~i~~ 124 (126)
..+++|+.|++++|.+++ .++ ..+..+++|++|++++|.+++
T Consensus 196 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 242 (312)
T 1wwl_A 196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRD 242 (312)
T ss_dssp CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCS
T ss_pred HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCc
Confidence 455566666666666552 111 223345556666666665554
No 98
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.54 E-value=9e-14 Score=93.26 Aligned_cols=101 Identities=23% Similarity=0.247 Sum_probs=47.0
Q ss_pred CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcE
Q 037844 11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKV 90 (126)
Q Consensus 11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~ 90 (126)
+++++|++++|.+.+. +. +..+++|++|++++|.+.+ ++ .+..+++|+.+++++|.+++. + .+..+++|+.
T Consensus 63 ~~L~~L~L~~n~i~~~---~~-~~~l~~L~~L~L~~n~l~~--~~-~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~ 133 (308)
T 1h6u_A 63 NNLIGLELKDNQITDL---AP-LKNLTKITELELSGNPLKN--VS-AIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQV 133 (308)
T ss_dssp TTCCEEECCSSCCCCC---GG-GTTCCSCCEEECCSCCCSC--CG-GGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCE
T ss_pred CCCCEEEccCCcCCCC---hh-HccCCCCCEEEccCCcCCC--ch-hhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCE
Confidence 4555566666555532 22 4555555555555555541 22 344455555555555555421 1 1444444444
Q ss_pred EEeecCccCccchHHHhcCCCCcEEEccCCcC
Q 037844 91 LAIIKCNFCSRITFLLRNLTQLIILHLSQNSF 122 (126)
Q Consensus 91 l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i 122 (126)
|++++|.+.+. +. +..+++|++|++++|.+
T Consensus 134 L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l 163 (308)
T 1h6u_A 134 LYLDLNQITNI-SP-LAGLTNLQYLSIGNAQV 163 (308)
T ss_dssp EECCSSCCCCC-GG-GGGCTTCCEEECCSSCC
T ss_pred EECCCCccCcC-cc-ccCCCCccEEEccCCcC
Confidence 44444444422 21 33444444444444443
No 99
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.54 E-value=2.8e-14 Score=92.36 Aligned_cols=110 Identities=17% Similarity=0.221 Sum_probs=83.9
Q ss_pred CCCceEEEEcCCCC-cccccCCCccccccccCceeEecc-CcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCC
Q 037844 9 QRNHVIKLDLPSSC-LQDSINSSSGLFKLIHLKWLILLF-NKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLR 86 (126)
Q Consensus 9 ~~~~l~~L~ls~n~-l~~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~ 86 (126)
..+++++|++++|. ++... +..+..+++|++|++++ |.++ ...+..+..+++|+++++++|.+++ +|. +..++
T Consensus 53 ~l~~L~~L~l~~n~~l~~i~--~~~f~~l~~L~~L~l~~~n~l~-~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~ 127 (239)
T 2xwt_C 53 NLPNISRIYVSIDVTLQQLE--SHSFYNLSKVTHIEIRNTRNLT-YIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVY 127 (239)
T ss_dssp TCTTCCEEEEECCSSCCEEC--TTTEESCTTCCEEEEEEETTCC-EECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCC
T ss_pred CCCCCcEEeCCCCCCcceeC--HhHcCCCcCCcEEECCCCCCee-EcCHHHhCCCCCCCEEeCCCCCCcc-ccc-ccccc
Confidence 45788999999996 77444 45778888999999998 8887 2344567788889999999888874 555 77777
Q ss_pred CCc---EEEeecC-ccCccchHHHhcCCCCc-EEEccCCcCe
Q 037844 87 SLK---VLAIIKC-NFCSRITFLLRNLTQLI-ILHLSQNSFR 123 (126)
Q Consensus 87 ~L~---~l~l~~n-~~~~~~p~~l~~~~~L~-~l~l~~n~i~ 123 (126)
+|+ .+++++| .+.+..+..+..+++|+ .+++++|.++
T Consensus 128 ~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~ 169 (239)
T 2xwt_C 128 STDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT 169 (239)
T ss_dssp BCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC
T ss_pred ccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc
Confidence 777 8888888 77755455677788888 8888888765
No 100
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.53 E-value=8.2e-14 Score=99.92 Aligned_cols=113 Identities=23% Similarity=0.280 Sum_probs=80.6
Q ss_pred CCCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCc-chhhhhhCCCCCCEEEcccCcCcCcCCcc-ccCC
Q 037844 8 KQRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGF-EILIKIINLSRLSYLNLFYSSLSGGLPVS-TKYL 85 (126)
Q Consensus 8 ~~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~-~~~l 85 (126)
...+++++|++++|.+.+.. |..+..+++|++|++++|.+++. ..|..+..+++|+.+++++|.+++..|.. +..+
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l 427 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSV--FQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWA 427 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTT--TTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCC
T ss_pred cCCCCceEEECCCCccccch--hhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCc
Confidence 45578999999999999777 77888899999999999998721 23456778899999999999888645543 4444
Q ss_pred CC----------------------CcEEEeecCccCccchHHHhcCCCCcEEEccCCcCe
Q 037844 86 RS----------------------LKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFR 123 (126)
Q Consensus 86 ~~----------------------L~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~ 123 (126)
+. |+.|++++|.++ .+|..+..+++|++|++++|+++
T Consensus 428 ~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~ 486 (562)
T 3a79_B 428 ESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK 486 (562)
T ss_dssp TTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC
T ss_pred ccCCEEECCCCCCCcchhhhhcCcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC
Confidence 44 555555555554 45555556667777777777665
No 101
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.53 E-value=7.5e-14 Score=100.61 Aligned_cols=104 Identities=22% Similarity=0.174 Sum_probs=90.5
Q ss_pred CCCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcC-CccccCCC
Q 037844 8 KQRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGL-PVSTKYLR 86 (126)
Q Consensus 8 ~~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~-~~~~~~l~ 86 (126)
...++|+.|++++|.++ .+ |..+..+++|+.|++++|.++ .+| .++.+++|+.|++++|.+++.. |..++.++
T Consensus 460 ~~l~~L~~L~Ls~N~l~-~l--p~~~~~l~~L~~L~Ls~N~l~--~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~ 533 (567)
T 1dce_A 460 EQLLLVTHLDLSHNRLR-AL--PPALAALRCLEVLQASDNALE--NVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCP 533 (567)
T ss_dssp GGGTTCCEEECCSSCCC-CC--CGGGGGCTTCCEEECCSSCCC--CCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCT
T ss_pred cccccCcEeecCccccc-cc--chhhhcCCCCCEEECCCCCCC--CCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCC
Confidence 34568999999999999 77 889999999999999999998 366 7999999999999999999776 88999999
Q ss_pred CCcEEEeecCccCccch---HHHhcCCCCcEEEc
Q 037844 87 SLKVLAIIKCNFCSRIT---FLLRNLTQLIILHL 117 (126)
Q Consensus 87 ~L~~l~l~~n~~~~~~p---~~l~~~~~L~~l~l 117 (126)
+|+.|++++|++++..| ..+..+++|+.|++
T Consensus 534 ~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 534 RLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp TCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 99999999999986543 23456899999874
No 102
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.53 E-value=2.5e-14 Score=103.41 Aligned_cols=112 Identities=14% Similarity=0.081 Sum_probs=96.2
Q ss_pred CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcE
Q 037844 11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKV 90 (126)
Q Consensus 11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~ 90 (126)
++++.+++++|.+.... +..+..+++|++|++++|.+.+ ..+..+..+++|++|++++|.+++..|..++.++.|++
T Consensus 51 ~~l~~l~l~~~~l~~lp--~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLP--AALLDSFRQVELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp CCCSEEEESSCEESEEC--THHHHHCCCCSEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCceEEEeeCCCCCCcC--HHHHccCCCCcEEECCCCCCCC-CChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 57899999999988543 4456789999999999999983 55668899999999999999999877777899999999
Q ss_pred EEeecCccCccchHHHhcCCCCcEEEccCCcCeec
Q 037844 91 LAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRGR 125 (126)
Q Consensus 91 l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~~ 125 (126)
|++++|.+.+..+..+..+++|++|++++|.+++.
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~ 162 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI 162 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCC
Confidence 99999999955455578999999999999998764
No 103
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.52 E-value=8.1e-14 Score=91.64 Aligned_cols=104 Identities=23% Similarity=0.259 Sum_probs=88.2
Q ss_pred CCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCC
Q 037844 9 QRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSL 88 (126)
Q Consensus 9 ~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L 88 (126)
..+++++|++++|.+. .+ + .+..+++|++|++++|.++ .++. +..+++|+.+++++|++++ ++. +.. +.|
T Consensus 39 ~l~~L~~L~l~~n~i~-~l--~-~l~~l~~L~~L~L~~N~i~--~~~~-l~~l~~L~~L~L~~N~l~~-l~~-~~~-~~L 108 (263)
T 1xeu_A 39 ELSGVQNFNGDNSNIQ-SL--A-GMQFFTNLKELHLSHNQIS--DLSP-LKDLTKLEELSVNRNRLKN-LNG-IPS-ACL 108 (263)
T ss_dssp HHTTCSEEECTTSCCC-CC--T-TGGGCTTCCEEECCSSCCC--CCGG-GTTCSSCCEEECCSSCCSC-CTT-CCC-SSC
T ss_pred hcCcCcEEECcCCCcc-cc--h-HHhhCCCCCEEECCCCccC--CChh-hccCCCCCEEECCCCccCC-cCc-ccc-Ccc
Confidence 4478999999999988 55 4 6788999999999999998 3555 8899999999999999985 443 333 899
Q ss_pred cEEEeecCccCccchHHHhcCCCCcEEEccCCcCee
Q 037844 89 KVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRG 124 (126)
Q Consensus 89 ~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~ 124 (126)
+.|++++|.+++ ++ .+..+++|+.|++++|.+++
T Consensus 109 ~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~ 142 (263)
T 1xeu_A 109 SRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKS 142 (263)
T ss_dssp CEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCB
T ss_pred cEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCC
Confidence 999999999994 44 58899999999999999876
No 104
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.52 E-value=2.3e-14 Score=96.79 Aligned_cols=85 Identities=24% Similarity=0.196 Sum_probs=53.8
Q ss_pred cCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcEEEeecCccCccchHHHhcCCCCcEEEc
Q 037844 38 HLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKVLAIIKCNFCSRITFLLRNLTQLIILHL 117 (126)
Q Consensus 38 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~l~~~~~L~~l~l 117 (126)
+|++|++++|.+.+ ..+..+..+++|+.+++++|.+++..+..+..+++|+.|++++|.++ .+|..+..+++|+++++
T Consensus 194 ~L~~L~l~~n~i~~-~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l 271 (332)
T 2ft3_A 194 TLNELHLDHNKIQA-IELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYL 271 (332)
T ss_dssp SCSCCBCCSSCCCC-CCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEEC
T ss_pred CCCEEECCCCcCCc-cCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEEC
Confidence 45555566665552 33445666666777777777666555555666667777777777666 56666666667777777
Q ss_pred cCCcCee
Q 037844 118 SQNSFRG 124 (126)
Q Consensus 118 ~~n~i~~ 124 (126)
++|++++
T Consensus 272 ~~N~l~~ 278 (332)
T 2ft3_A 272 HTNNITK 278 (332)
T ss_dssp CSSCCCB
T ss_pred CCCCCCc
Confidence 7766654
No 105
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.51 E-value=4e-14 Score=95.18 Aligned_cols=109 Identities=13% Similarity=0.067 Sum_probs=91.8
Q ss_pred CCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhh-hCCCCCCEEEcccCcCcCcCCccccCCCCC
Q 037844 10 RNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKI-INLSRLSYLNLFYSSLSGGLPVSTKYLRSL 88 (126)
Q Consensus 10 ~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L 88 (126)
.+++++|++++|.++... +..+..+++|++|++++|.+.+ ..+..+ ..+++|+++++++|.+++. + ....+++|
T Consensus 119 ~~~L~~L~l~~N~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L 193 (317)
T 3o53_A 119 GQGKKNIYLANNKITMLR--DLDEGCRSRVQYLDLKLNEIDT-VNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKL 193 (317)
T ss_dssp CSSCEEEECCSSCCCSGG--GBCTGGGSSEEEEECTTSCCCE-EEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTC
T ss_pred cCCCCEEECCCCCCCCcc--chhhhccCCCCEEECCCCCCCc-ccHHHHhhccCcCCEEECCCCcCccc-c-cccccccC
Confidence 478999999999999766 6678889999999999999983 445555 4789999999999999754 3 34458999
Q ss_pred cEEEeecCccCccchHHHhcCCCCcEEEccCCcCee
Q 037844 89 KVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRG 124 (126)
Q Consensus 89 ~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~ 124 (126)
+.|++++|.++ .+|..+..+++|++|++++|.+++
T Consensus 194 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~~ 228 (317)
T 3o53_A 194 KTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL 228 (317)
T ss_dssp CEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCCE
T ss_pred CEEECCCCcCC-cchhhhcccCcccEEECcCCcccc
Confidence 99999999999 556668899999999999999874
No 106
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.51 E-value=2.7e-14 Score=95.71 Aligned_cols=110 Identities=17% Similarity=0.067 Sum_probs=62.5
Q ss_pred CCceEEEEcCCCCcccc--cCCCccccccccCceeEeccCcccCcchhh----hhhCCCCCCEEEcccCcCcCcCCcccc
Q 037844 10 RNHVIKLDLPSSCLQDS--INSSSGLFKLIHLKWLILLFNKFSGFEILI----KIINLSRLSYLNLFYSSLSGGLPVSTK 83 (126)
Q Consensus 10 ~~~l~~L~ls~n~l~~~--~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~----~~~~l~~L~~l~l~~~~~~~~~~~~~~ 83 (126)
.+++++|++++|++.+. .+.+..+..+++|++|++++|.++ .++. .+..+++|+++++++|.+++..|..+.
T Consensus 168 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~--~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~ 245 (310)
T 4glp_A 168 FPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME--TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAP 245 (310)
T ss_dssp CTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC--CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCS
T ss_pred CCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC--chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHH
Confidence 34566666666654421 100111234555666666666654 2222 234567777777777777765565555
Q ss_pred CC---CCCcEEEeecCccCccchHHHhcCCCCcEEEccCCcCee
Q 037844 84 YL---RSLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRG 124 (126)
Q Consensus 84 ~l---~~L~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~ 124 (126)
.+ ++|++|++++|.++ .+|..+. ++|+.|++++|++++
T Consensus 246 ~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~ 286 (310)
T 4glp_A 246 RCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR 286 (310)
T ss_dssp SCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS
T ss_pred hccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC
Confidence 54 57777777777776 5555442 566666666666654
No 107
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.51 E-value=1.8e-13 Score=99.25 Aligned_cols=62 Identities=24% Similarity=0.284 Sum_probs=26.3
Q ss_pred hhCCCCCCEEEcccCcCcCcCCccccCCCCCcEEEeecCccCccchHHHhcCCCCcEEEccCCcCe
Q 037844 58 IINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFR 123 (126)
Q Consensus 58 ~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~ 123 (126)
+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+.+..| +..+++|+.|++++|.++
T Consensus 127 l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 127 LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 188 (605)
T ss_dssp GGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred ccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCC
Confidence 33444444444444444322 233444444444444444443222 444444444444444443
No 108
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.50 E-value=4.8e-14 Score=94.47 Aligned_cols=86 Identities=10% Similarity=-0.036 Sum_probs=57.6
Q ss_pred CceEEEEcCCCCcccccCCCccc--cccccCceeEeccCcccCcchh----hhhhCCCCCCEEEcccCcCcCcCCccccC
Q 037844 11 NHVIKLDLPSSCLQDSINSSSGL--FKLIHLKWLILLFNKFSGFEIL----IKIINLSRLSYLNLFYSSLSGGLPVSTKY 84 (126)
Q Consensus 11 ~~l~~L~ls~n~l~~~~~~~~~~--~~l~~L~~L~l~~n~~~~~~~~----~~~~~l~~L~~l~l~~~~~~~~~~~~~~~ 84 (126)
+++++|++++|.+.+.. |..+ ..+++|++|++++|.+.+ ..+ ..+..+++|+++++++|.+.+..+..+..
T Consensus 91 ~~L~~L~l~~n~l~~~~--~~~~~~~~~~~L~~L~Ls~n~i~~-~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 167 (310)
T 4glp_A 91 SRLKELTLEDLKITGTM--PPLPLEATGLALSSLRLRNVSWAT-GRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRA 167 (310)
T ss_dssp SCCCEEEEESCCCBSCC--CCCSSSCCCBCCSSCEEESCCCSS-TTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCC
T ss_pred CceeEEEeeCCEeccch--hhhhhhccCCCCCEEEeecccccc-hhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhcc
Confidence 34788888888877666 5555 667777777777777762 222 23345677777777777776555566666
Q ss_pred CCCCcEEEeecCccC
Q 037844 85 LRSLKVLAIIKCNFC 99 (126)
Q Consensus 85 l~~L~~l~l~~n~~~ 99 (126)
+++|++|++++|++.
T Consensus 168 l~~L~~L~Ls~N~l~ 182 (310)
T 4glp_A 168 FPALTSLDLSDNPGL 182 (310)
T ss_dssp CTTCCEEECCSCTTC
T ss_pred CCCCCEEECCCCCCc
Confidence 777777777777654
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.50 E-value=1.9e-13 Score=99.18 Aligned_cols=106 Identities=27% Similarity=0.261 Sum_probs=84.7
Q ss_pred CCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCC
Q 037844 9 QRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSL 88 (126)
Q Consensus 9 ~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L 88 (126)
..++|+.|++++|.+.+.. + +..+++|+.|++++|.+. .++ .+..+++|+.|++++|.+.+. +.+..+++|
T Consensus 63 ~l~~L~~L~Ls~N~l~~~~---~-l~~l~~L~~L~Ls~N~l~--~l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L 133 (605)
T 1m9s_A 63 YLPNVTKLFLNGNKLTDIK---P-LTNLKNLGWLFLDENKIK--DLS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQL 133 (605)
T ss_dssp GCTTCCEEECTTSCCCCCG---G-GGGCTTCCEEECCSSCCC--CCT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTC
T ss_pred cCCCCCEEEeeCCCCCCCh---h-hccCCCCCEEECcCCCCC--CCh-hhccCCCCCEEEecCCCCCCC--ccccCCCcc
Confidence 4578888999988888543 3 778888999999998887 233 577888999999999988742 457888999
Q ss_pred cEEEeecCccCccchHHHhcCCCCcEEEccCCcCeec
Q 037844 89 KVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRGR 125 (126)
Q Consensus 89 ~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~~ 125 (126)
+.|++++|.+.+. ..+..+++|+.|++++|.+++.
T Consensus 134 ~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~ 168 (605)
T 1m9s_A 134 ESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI 168 (605)
T ss_dssp SEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCC
T ss_pred CEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCc
Confidence 9999999988854 5678889999999999988763
No 110
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.49 E-value=6.9e-14 Score=99.11 Aligned_cols=107 Identities=20% Similarity=0.151 Sum_probs=93.2
Q ss_pred CCceEEEEcCCCCcccccCCCcccc-ccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCC
Q 037844 10 RNHVIKLDLPSSCLQDSINSSSGLF-KLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSL 88 (126)
Q Consensus 10 ~~~l~~L~ls~n~l~~~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L 88 (126)
.++|+.|++++|.+.+.. |..+. .+++|++|++++|.+++ ++. ...+++|+.+++++|.+++ .|+.+..+++|
T Consensus 143 l~~L~~L~Ls~N~l~~~~--~~~l~~~l~~L~~L~Ls~N~l~~--~~~-~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L 216 (487)
T 3oja_A 143 RSRVQYLDLKLNEIDTVN--FAELAASSDTLEHLNLQYNFIYD--VKG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGV 216 (487)
T ss_dssp GSSEEEEECTTSCCCEEE--GGGGGGGTTTCCEEECTTSCCCE--EEC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTC
T ss_pred CCCCCEEECCCCCCCCcC--hHHHhhhCCcccEEecCCCcccc--ccc-cccCCCCCEEECCCCCCCC-CCHhHcCCCCc
Confidence 478999999999999877 66665 78999999999999983 443 4468999999999999985 45568899999
Q ss_pred cEEEeecCccCccchHHHhcCCCCcEEEccCCcCe
Q 037844 89 KVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFR 123 (126)
Q Consensus 89 ~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~ 123 (126)
+.|++++|.++ .+|..+..+++|+.+++++|++.
T Consensus 217 ~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 217 TWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp SEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBC
T ss_pred cEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCc
Confidence 99999999999 57888889999999999999987
No 111
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.49 E-value=1.7e-13 Score=84.72 Aligned_cols=89 Identities=17% Similarity=0.033 Sum_probs=77.1
Q ss_pred CCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCc
Q 037844 10 RNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLK 89 (126)
Q Consensus 10 ~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~ 89 (126)
.+++++|++++|.+++.. |..+..+++|++|++++|.+++ ..+..+..+++|+++++++|++++..+..+..+++|+
T Consensus 29 ~~~l~~L~L~~N~i~~~~--~~~~~~l~~L~~L~Ls~N~l~~-l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 105 (170)
T 3g39_A 29 PTTTQVLYLYDNQITKLE--PGVFDRLTQLTRLDLDNNQLTV-LPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLT 105 (170)
T ss_dssp CTTCSEEECCSSCCCCCC--TTTTTTCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCCcEEEcCCCcCCccC--hhhhcCcccCCEEECCCCCcCc-cChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCC
Confidence 368999999999999776 7788999999999999999983 4445568899999999999999866666688999999
Q ss_pred EEEeecCccCcc
Q 037844 90 VLAIIKCNFCSR 101 (126)
Q Consensus 90 ~l~l~~n~~~~~ 101 (126)
.|++++|++...
T Consensus 106 ~L~L~~N~~~c~ 117 (170)
T 3g39_A 106 HIWLLNNPWDCA 117 (170)
T ss_dssp EEECCSSCBCTT
T ss_pred EEEeCCCCCCCC
Confidence 999999998754
No 112
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.46 E-value=3.3e-13 Score=83.76 Aligned_cols=89 Identities=17% Similarity=0.082 Sum_probs=75.9
Q ss_pred CCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCc
Q 037844 10 RNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLK 89 (126)
Q Consensus 10 ~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~ 89 (126)
.+++++|++++|++.+.. |..+..+++|++|++++|.+++ ..+..+..+++|+.+++++|++++..+..+..+++|+
T Consensus 32 ~~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~ 108 (174)
T 2r9u_A 32 PTDKQRLWLNNNQITKLE--PGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLT 108 (174)
T ss_dssp CTTCSEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCS
T ss_pred CCCCcEEEeCCCCccccC--HHHhcCCcCCCEEECCCCCCCc-cChhHhCCcchhhEEECCCCccceeCHHHhccccCCC
Confidence 368999999999999776 7788999999999999999983 3334467899999999999999865555588999999
Q ss_pred EEEeecCccCcc
Q 037844 90 VLAIIKCNFCSR 101 (126)
Q Consensus 90 ~l~l~~n~~~~~ 101 (126)
.+++++|++...
T Consensus 109 ~L~L~~N~~~c~ 120 (174)
T 2r9u_A 109 HIYLYNNPWDCE 120 (174)
T ss_dssp EEECCSSCBCTT
T ss_pred EEEeCCCCcccc
Confidence 999999998743
No 113
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.46 E-value=6.8e-13 Score=93.30 Aligned_cols=61 Identities=28% Similarity=0.389 Sum_probs=26.5
Q ss_pred CCCCCCEEEcccCcCcCcCCccccCCCCCcEEEeecCccCccchHHHhcCCCCcEEEccCCcCee
Q 037844 60 NLSRLSYLNLFYSSLSGGLPVSTKYLRSLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRG 124 (126)
Q Consensus 60 ~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~ 124 (126)
.+++|+.+++++|.+++..| +..+++|+.|++++|++.+. ..+..+++|+.+++++|++++
T Consensus 307 ~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~ 367 (466)
T 1o6v_A 307 NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISD 367 (466)
T ss_dssp GCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCB
T ss_pred CCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCc
Confidence 33444444444444432221 33444444444444444422 234445555555555555544
No 114
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.46 E-value=6.8e-13 Score=93.29 Aligned_cols=105 Identities=23% Similarity=0.293 Sum_probs=87.7
Q ss_pred CCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCC
Q 037844 9 QRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSL 88 (126)
Q Consensus 9 ~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L 88 (126)
..+++++|++++|++.+.. .+..+++|++|++++|.+.+ . +. +..+++|+.+++++|.+++. ..+..+++|
T Consensus 285 ~l~~L~~L~L~~n~l~~~~----~~~~l~~L~~L~L~~n~l~~-~-~~-~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L 355 (466)
T 1o6v_A 285 GLTALTNLELNENQLEDIS----PISNLKNLTYLTLYFNNISD-I-SP-VSSLTKLQRLFFYNNKVSDV--SSLANLTNI 355 (466)
T ss_dssp TCTTCSEEECCSSCCSCCG----GGGGCTTCSEEECCSSCCSC-C-GG-GGGCTTCCEEECCSSCCCCC--GGGTTCTTC
T ss_pred CCCccCeEEcCCCcccCch----hhcCCCCCCEEECcCCcCCC-c-hh-hccCccCCEeECCCCccCCc--hhhccCCCC
Confidence 4467888888888877543 26788899999999999883 3 33 77899999999999999854 568899999
Q ss_pred cEEEeecCccCccchHHHhcCCCCcEEEccCCcCee
Q 037844 89 KVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRG 124 (126)
Q Consensus 89 ~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~ 124 (126)
+.+++++|++.+..| +..+++|+.+++++|++++
T Consensus 356 ~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 356 NWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred CEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 999999999997766 8899999999999998876
No 115
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.45 E-value=1.8e-15 Score=95.57 Aligned_cols=107 Identities=22% Similarity=0.169 Sum_probs=84.6
Q ss_pred CCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCc
Q 037844 10 RNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLK 89 (126)
Q Consensus 10 ~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~ 89 (126)
.+++++|++++|.+.+ + | .+..+++|++|++++|.+. .+|..+..+++|+.+++++|.+++ +| .+..+++|+
T Consensus 47 l~~L~~L~ls~n~l~~-l--~-~~~~l~~L~~L~l~~n~l~--~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~ 118 (198)
T 1ds9_A 47 LKACKHLALSTNNIEK-I--S-SLSGMENLRILSLGRNLIK--KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLR 118 (198)
T ss_dssp TTTCSEEECSEEEESC-C--C-CHHHHTTCCEEEEEEEEEC--SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSS
T ss_pred CCCCCEEECCCCCCcc-c--c-ccccCCCCCEEECCCCCcc--cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCC
Confidence 4678899999988874 6 6 7788888999999999887 467767777889999999888875 33 577788899
Q ss_pred EEEeecCccCccch-HHHhcCCCCcEEEccCCcCee
Q 037844 90 VLAIIKCNFCSRIT-FLLRNLTQLIILHLSQNSFRG 124 (126)
Q Consensus 90 ~l~l~~n~~~~~~p-~~l~~~~~L~~l~l~~n~i~~ 124 (126)
.|++++|.+.+..+ ..+..+++|+++++++|.+++
T Consensus 119 ~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp EEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred EEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence 99999988884222 467888899999999888754
No 116
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.45 E-value=3.1e-14 Score=95.99 Aligned_cols=107 Identities=23% Similarity=0.210 Sum_probs=45.8
Q ss_pred CceEEEEcCCCCcccc-cCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccC-cCcCc-CCccccCCCC
Q 037844 11 NHVIKLDLPSSCLQDS-INSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYS-SLSGG-LPVSTKYLRS 87 (126)
Q Consensus 11 ~~l~~L~ls~n~l~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~-~~~~~-~~~~~~~l~~ 87 (126)
+++++|++++|.+.+. . +..+..+++|++|++++|.+. ...+..++.+++|+++++++| .+++. ++..+..+++
T Consensus 93 ~~L~~L~L~~~~l~~~~~--~~~~~~~~~L~~L~L~~~~l~-~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~ 169 (336)
T 2ast_B 93 FRVQHMDLSNSVIEVSTL--HGILSQCSKLQNLSLEGLRLS-DPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 169 (336)
T ss_dssp BCCCEEECTTCEECHHHH--HHHHTTBCCCSEEECTTCBCC-HHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTT
T ss_pred CCCCEEEccCCCcCHHHH--HHHHhhCCCCCEEeCcCcccC-HHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCC
Confidence 4455555555544432 3 333444445555555555444 233444444445555555444 33321 2222333444
Q ss_pred CcEEEeecC-ccCcc-chHHHhcCC-CCcEEEccCC
Q 037844 88 LKVLAIIKC-NFCSR-ITFLLRNLT-QLIILHLSQN 120 (126)
Q Consensus 88 L~~l~l~~n-~~~~~-~p~~l~~~~-~L~~l~l~~n 120 (126)
|+.|++++| .+++. ++..+..++ +|++|++++|
T Consensus 170 L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 170 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 205 (336)
T ss_dssp CCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred CCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence 444444444 34322 233334444 4444444444
No 117
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.44 E-value=1.5e-13 Score=101.55 Aligned_cols=90 Identities=22% Similarity=0.160 Sum_probs=79.6
Q ss_pred CccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcEEEeecCccCccchHHHhcC
Q 037844 30 SSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKVLAIIKCNFCSRITFLLRNL 109 (126)
Q Consensus 30 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~l~~~ 109 (126)
+..+..++.|+.|++++|.+. .+|..+..+++|++|++++|.++ .+|..++.+++|++|+|++|.++ .+|..++.+
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~--~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 292 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIF--NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSC 292 (727)
T ss_dssp -----CCCCCCEEECTTSCCS--CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred hhhhccCCCCcEEECCCCCCC--CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCC
Confidence 456778899999999999997 57877889999999999999998 78998999999999999999999 889999999
Q ss_pred CCCcEEEccCCcCe
Q 037844 110 TQLIILHLSQNSFR 123 (126)
Q Consensus 110 ~~L~~l~l~~n~i~ 123 (126)
++|++|++++|.++
T Consensus 293 ~~L~~L~L~~N~l~ 306 (727)
T 4b8c_D 293 FQLKYFYFFDNMVT 306 (727)
T ss_dssp TTCSEEECCSSCCC
T ss_pred CCCCEEECCCCCCC
Confidence 99999999999886
No 118
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.43 E-value=1.5e-13 Score=94.50 Aligned_cols=113 Identities=19% Similarity=0.168 Sum_probs=79.7
Q ss_pred CceEEEEcCCCCccc-----ccCCCccccccccCceeEeccCcccC---cchhhhhhCCCCCCEEEcccCcCcCc----C
Q 037844 11 NHVIKLDLPSSCLQD-----SINSSSGLFKLIHLKWLILLFNKFSG---FEILIKIINLSRLSYLNLFYSSLSGG----L 78 (126)
Q Consensus 11 ~~l~~L~ls~n~l~~-----~~~~~~~~~~l~~L~~L~l~~n~~~~---~~~~~~~~~l~~L~~l~l~~~~~~~~----~ 78 (126)
++|++|++++|.+.. .. +..+..+++|++|++++|.++. ..+|..+..+++|+.+++++|.+++. +
T Consensus 187 ~~L~~L~L~~n~l~~~g~~~l~--~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l 264 (386)
T 2ca6_A 187 RLLHTVKMVQNGIRPEGIEHLL--LEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAV 264 (386)
T ss_dssp TTCCEEECCSSCCCHHHHHHHH--HTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHH
T ss_pred CCcCEEECcCCCCCHhHHHHHH--HHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHH
Confidence 567777888777762 22 3356677788888888888731 14566677788888888888887644 3
Q ss_pred Cccc--cCCCCCcEEEeecCccCc----cchHHH-hcCCCCcEEEccCCcCeec
Q 037844 79 PVST--KYLRSLKVLAIIKCNFCS----RITFLL-RNLTQLIILHLSQNSFRGR 125 (126)
Q Consensus 79 ~~~~--~~l~~L~~l~l~~n~~~~----~~p~~l-~~~~~L~~l~l~~n~i~~~ 125 (126)
+..+ +.+++|+.|++++|.+++ .+|..+ ..+++|++|++++|++++.
T Consensus 265 ~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 265 VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp HHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred HHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence 4444 337888888888888886 367666 5578888888888888764
No 119
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.42 E-value=1.6e-13 Score=92.52 Aligned_cols=111 Identities=21% Similarity=0.201 Sum_probs=94.4
Q ss_pred CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcE
Q 037844 11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKV 90 (126)
Q Consensus 11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~ 90 (126)
++++.|++++|.+.+.. ..+..+++|++|++++|.+.+..++..+..+++|+++++++|.+++..+..+..+++|+.
T Consensus 70 ~~l~~L~l~~n~l~~~~---~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~ 146 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPL---AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVR 146 (336)
T ss_dssp TTCSEEECTTCEECSCC---CSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSE
T ss_pred ccceEEEcCCccccccc---hhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCE
Confidence 57889999999888664 346678999999999999873237778889999999999999988777788888999999
Q ss_pred EEeecC-ccCc-cchHHHhcCCCCcEEEccCC-cCee
Q 037844 91 LAIIKC-NFCS-RITFLLRNLTQLIILHLSQN-SFRG 124 (126)
Q Consensus 91 l~l~~n-~~~~-~~p~~l~~~~~L~~l~l~~n-~i~~ 124 (126)
|++++| .+++ .++..+..+++|++|++++| .+++
T Consensus 147 L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~ 183 (336)
T 2ast_B 147 LNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTE 183 (336)
T ss_dssp EECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCH
T ss_pred EECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcCh
Confidence 999999 6775 36777889999999999999 8875
No 120
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.39 E-value=2.1e-12 Score=90.91 Aligned_cols=101 Identities=21% Similarity=0.228 Sum_probs=74.1
Q ss_pred CCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCc
Q 037844 10 RNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLK 89 (126)
Q Consensus 10 ~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~ 89 (126)
.+++++|++++|.+++ . | .+..+++|++|++++|.+++ ++ ++.+++|+++++++|.+++. + ++.++.|+
T Consensus 41 l~~L~~L~Ls~n~l~~-~--~-~l~~l~~L~~L~Ls~n~l~~--~~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~ 109 (457)
T 3bz5_A 41 LATLTSLDCHNSSITD-M--T-GIEKLTGLTKLICTSNNITT--LD--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLT 109 (457)
T ss_dssp HTTCCEEECCSSCCCC-C--T-TGGGCTTCSEEECCSSCCSC--CC--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCC
T ss_pred cCCCCEEEccCCCccc-C--h-hhcccCCCCEEEccCCcCCe--Ec--cccCCCCCEEECcCCCCcee-e--cCCCCcCC
Confidence 3678888888888774 4 4 56777888888888888873 33 66778888888888887753 2 67777888
Q ss_pred EEEeecCccCccchHHHhcCCCCcEEEccCCcCee
Q 037844 90 VLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRG 124 (126)
Q Consensus 90 ~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~ 124 (126)
+|++++|.+++ ++ ++.+++|++|++++|.+++
T Consensus 110 ~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~ 141 (457)
T 3bz5_A 110 YLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTE 141 (457)
T ss_dssp EEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSC
T ss_pred EEECCCCcCCe-ec--CCCCCcCCEEECCCCccce
Confidence 88888887774 43 6677777777777777765
No 121
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.39 E-value=1.3e-12 Score=94.24 Aligned_cols=99 Identities=14% Similarity=0.101 Sum_probs=72.8
Q ss_pred CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCC--
Q 037844 11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSL-- 88 (126)
Q Consensus 11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L-- 88 (126)
++|+.|++++|.+++ + |. .+++|++|++++|.++ .+|. +. ++|+.|++++|.++ .+|. +.. +|
T Consensus 140 ~~L~~L~Ls~N~l~~-l--p~---~l~~L~~L~Ls~N~L~--~lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~ 204 (571)
T 3cvr_A 140 ALLEYINADNNQLTM-L--PE---LPTSLEVLSVRNNQLT--FLPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHH 204 (571)
T ss_dssp TTCCEEECCSSCCSC-C--CC---CCTTCCEEECCSSCCS--CCCC-CC--TTCCEEECCSSCCS-SCCC-CC-------
T ss_pred ccccEEeCCCCccCc-C--CC---cCCCcCEEECCCCCCC--Ccch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhc
Confidence 566777777777663 4 43 4567778888888776 2555 44 78888888888887 5555 443 66
Q ss_pred -----cEEEeecCccCccchHHHhcCCCCcEEEccCCcCeec
Q 037844 89 -----KVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRGR 125 (126)
Q Consensus 89 -----~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~~ 125 (126)
+.|++++|.++ .+|..+..+++|+.|++++|++++.
T Consensus 205 ~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~ 245 (571)
T 3cvr_A 205 SEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSR 245 (571)
T ss_dssp ---CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHH
T ss_pred ccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCc
Confidence 99999999998 6888888899999999999999874
No 122
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.38 E-value=2.3e-13 Score=93.56 Aligned_cols=40 Identities=28% Similarity=0.388 Sum_probs=17.2
Q ss_pred cCCCCCcEEEeecCccC----ccchHHHhcCCCCcEEEccCCcC
Q 037844 83 KYLRSLKVLAIIKCNFC----SRITFLLRNLTQLIILHLSQNSF 122 (126)
Q Consensus 83 ~~l~~L~~l~l~~n~~~----~~~p~~l~~~~~L~~l~l~~n~i 122 (126)
..+++|+.|++++|.++ ..+|..+..+++|++|++++|.+
T Consensus 213 ~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i 256 (386)
T 2ca6_A 213 AYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL 256 (386)
T ss_dssp GGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCC
T ss_pred hcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCC
Confidence 33444444444444442 23333444444444444444444
No 123
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.38 E-value=3.5e-13 Score=92.08 Aligned_cols=109 Identities=19% Similarity=0.130 Sum_probs=55.0
Q ss_pred ceEEEEcCCCCcccccCCC----ccccccc-cCceeEeccCcccCcchhhhhhCC-----CCCCEEEcccCcCcCcCCcc
Q 037844 12 HVIKLDLPSSCLQDSINSS----SGLFKLI-HLKWLILLFNKFSGFEILIKIINL-----SRLSYLNLFYSSLSGGLPVS 81 (126)
Q Consensus 12 ~l~~L~ls~n~l~~~~~~~----~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~l-----~~L~~l~l~~~~~~~~~~~~ 81 (126)
++++|++++|.+.+.. + ..+..++ +|++|++++|.+.+ ..+..++.+ ++|+++++++|.+++..+..
T Consensus 23 ~L~~L~Ls~n~l~~~~--~~~l~~~l~~~~~~L~~L~Ls~N~l~~-~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~ 99 (362)
T 3goz_A 23 GVTSLDLSLNNLYSIS--TVELIQAFANTPASVTSLNLSGNSLGF-KNSDELVQILAAIPANVTSLNLSGNFLSYKSSDE 99 (362)
T ss_dssp TCCEEECTTSCGGGSC--HHHHHHHHHTCCTTCCEEECCSSCGGG-SCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHH
T ss_pred CceEEEccCCCCChHH--HHHHHHHHHhCCCceeEEECcCCCCCH-HHHHHHHHHHhccCCCccEEECcCCcCChHHHHH
Confidence 4666666666665432 2 3344455 56666666666652 333334332 56666666666655443332
Q ss_pred c----cCC-CCCcEEEeecCccCccchHHHh----c-CCCCcEEEccCCcCe
Q 037844 82 T----KYL-RSLKVLAIIKCNFCSRITFLLR----N-LTQLIILHLSQNSFR 123 (126)
Q Consensus 82 ~----~~l-~~L~~l~l~~n~~~~~~p~~l~----~-~~~L~~l~l~~n~i~ 123 (126)
+ ..+ +.|+.|++++|.+++..+..+. . .++|++|++++|.++
T Consensus 100 l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 151 (362)
T 3goz_A 100 LVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLG 151 (362)
T ss_dssp HHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred HHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCC
Confidence 2 222 4555555555555544333322 2 135555555555554
No 124
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.37 E-value=5.9e-15 Score=93.18 Aligned_cols=106 Identities=21% Similarity=0.204 Sum_probs=89.4
Q ss_pred CceEEEEcCCCCcccccCCCc------cccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccC
Q 037844 11 NHVIKLDLPSSCLQDSINSSS------GLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKY 84 (126)
Q Consensus 11 ~~l~~L~ls~n~l~~~~~~~~------~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~ 84 (126)
..++.++++.+.+.+.. |. .+..+++|++|++++|.+. .+| .+..+++|+.+++++|.++ .+|..+..
T Consensus 18 ~~l~~l~l~~~~l~~~~--~~l~~l~~~~~~l~~L~~L~ls~n~l~--~l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~ 91 (198)
T 1ds9_A 18 KSVVATEAEKVELHGMI--PPIEKMDATLSTLKACKHLALSTNNIE--KIS-SLSGMENLRILSLGRNLIK-KIENLDAV 91 (198)
T ss_dssp TCCCCTTCSEEECCBCC--TTCCCCHHHHHHTTTCSEEECSEEEES--CCC-CHHHHTTCCEEEEEEEEEC-SCSSHHHH
T ss_pred ccccCcchheeEecccc--CcHhhhhHHHhcCCCCCEEECCCCCCc--ccc-ccccCCCCCEEECCCCCcc-cccchhhc
Confidence 45666777777777665 44 7888999999999999998 366 7888999999999999997 66777777
Q ss_pred CCCCcEEEeecCccCccchHHHhcCCCCcEEEccCCcCee
Q 037844 85 LRSLKVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRG 124 (126)
Q Consensus 85 l~~L~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~ 124 (126)
+++|+.|++++|.+++ +| .+..+++|++|++++|.+++
T Consensus 92 ~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~ 129 (198)
T 1ds9_A 92 ADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITN 129 (198)
T ss_dssp HHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCC
T ss_pred CCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCc
Confidence 8999999999999994 55 68888999999999999874
No 125
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.35 E-value=6.4e-12 Score=88.45 Aligned_cols=97 Identities=24% Similarity=0.238 Sum_probs=62.6
Q ss_pred CCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCC
Q 037844 9 QRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSL 88 (126)
Q Consensus 9 ~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L 88 (126)
..+++++|++++|.+++ . + +..+++|++|++++|.+++ ++ ++.+++|+++++++|.+++ .+ ++.+++|
T Consensus 62 ~l~~L~~L~Ls~n~l~~-~--~--~~~l~~L~~L~Ls~N~l~~--~~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L 129 (457)
T 3bz5_A 62 KLTGLTKLICTSNNITT-L--D--LSQNTNLTYLACDSNKLTN--LD--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLL 129 (457)
T ss_dssp GCTTCSEEECCSSCCSC-C--C--CTTCTTCSEEECCSSCCSC--CC--CTTCTTCCEEECCSSCCSC-CC--CTTCTTC
T ss_pred ccCCCCEEEccCCcCCe-E--c--cccCCCCCEEECcCCCCce--ee--cCCCCcCCEEECCCCcCCe-ec--CCCCCcC
Confidence 44677888888887773 3 3 5667777777777777763 32 6667777777777777764 22 6666777
Q ss_pred cEEEeecCccCccchHHHhcCCCCcEEEccCC
Q 037844 89 KVLAIIKCNFCSRITFLLRNLTQLIILHLSQN 120 (126)
Q Consensus 89 ~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n 120 (126)
+.|++++|.+++ ++ ++.+++|+++++++|
T Consensus 130 ~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n 158 (457)
T 3bz5_A 130 TYLNCARNTLTE-ID--VSHNTQLTELDCHLN 158 (457)
T ss_dssp CEEECTTSCCSC-CC--CTTCTTCCEEECTTC
T ss_pred CEEECCCCccce-ec--cccCCcCCEEECCCC
Confidence 777777777664 22 444445555555544
No 126
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.33 E-value=9.7e-12 Score=90.53 Aligned_cols=79 Identities=24% Similarity=0.267 Sum_probs=63.9
Q ss_pred ccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcEEEeecCccCccchHHHhcCCCCcEEE
Q 037844 37 IHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKVLAIIKCNFCSRITFLLRNLTQLIILH 116 (126)
Q Consensus 37 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~l~~~~~L~~l~ 116 (126)
++|+.|++++|.++ .+| ..+++|+.+++++|.++ .+|. .+++|+.|++++|.++ .+|..+..+++|+.|+
T Consensus 221 ~~L~~L~Ls~N~L~--~lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~ 290 (622)
T 3g06_A 221 SGLKELIVSGNRLT--SLP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVN 290 (622)
T ss_dssp TTCCEEECCSSCCS--CCC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEE
T ss_pred CCCCEEEccCCccC--cCC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEE
Confidence 56777777777776 244 34678888888888887 4454 5678999999999999 7898999999999999
Q ss_pred ccCCcCeec
Q 037844 117 LSQNSFRGR 125 (126)
Q Consensus 117 l~~n~i~~~ 125 (126)
+++|++++.
T Consensus 291 L~~N~l~~~ 299 (622)
T 3g06_A 291 LEGNPLSER 299 (622)
T ss_dssp CCSCCCCHH
T ss_pred ecCCCCCCc
Confidence 999999864
No 127
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.31 E-value=6.6e-13 Score=92.82 Aligned_cols=87 Identities=18% Similarity=0.111 Sum_probs=54.3
Q ss_pred cCceeEeccCcccCc---chhhhhhCCCCCCEEEcccCcCcCcCCccccC-----CCCCcEEEeecCccCc----cchHH
Q 037844 38 HLKWLILLFNKFSGF---EILIKIINLSRLSYLNLFYSSLSGGLPVSTKY-----LRSLKVLAIIKCNFCS----RITFL 105 (126)
Q Consensus 38 ~L~~L~l~~n~~~~~---~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~-----l~~L~~l~l~~n~~~~----~~p~~ 105 (126)
+|++|++++|.+++. .++..+..+++|+.+++++|.+++..+..+.. .+.|+.|++++|.+++ .+|..
T Consensus 314 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~ 393 (461)
T 1z7x_W 314 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAAT 393 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred cceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHH
Confidence 455555555555421 12344455677777777777666443333321 5577788888777775 56677
Q ss_pred HhcCCCCcEEEccCCcCee
Q 037844 106 LRNLTQLIILHLSQNSFRG 124 (126)
Q Consensus 106 l~~~~~L~~l~l~~n~i~~ 124 (126)
+..+++|+++++++|++++
T Consensus 394 l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 394 LLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp HHHCCCCCEEECCSSSCCH
T ss_pred HHhCCCccEEECCCCCCCH
Confidence 7777888888888887764
No 128
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.28 E-value=2.2e-11 Score=87.90 Aligned_cols=54 Identities=19% Similarity=0.190 Sum_probs=24.6
Q ss_pred CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCc
Q 037844 11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLS 75 (126)
Q Consensus 11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~ 75 (126)
+++++|++++|.++ .+ | ..+++|++|++++|.+++ +|. +.. +|+.|++++|.++
T Consensus 80 ~~L~~L~Ls~N~l~-~i--p---~~l~~L~~L~Ls~N~l~~--ip~-l~~--~L~~L~Ls~N~l~ 133 (571)
T 3cvr_A 80 PQITVLEITQNALI-SL--P---ELPASLEYLDACDNRLST--LPE-LPA--SLKHLDVDNNQLT 133 (571)
T ss_dssp TTCSEEECCSSCCS-CC--C---CCCTTCCEEECCSSCCSC--CCC-CCT--TCCEEECCSSCCS
T ss_pred CCCCEEECcCCCCc-cc--c---cccCCCCEEEccCCCCCC--cch-hhc--CCCEEECCCCcCC
Confidence 34555555555555 33 3 223445555555555541 333 222 4444444444443
No 129
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.28 E-value=3.4e-12 Score=87.16 Aligned_cols=108 Identities=15% Similarity=0.040 Sum_probs=86.3
Q ss_pred EEEcCCCCcccccCCCccccccccCceeEeccCcccCcchh----hhhhCCC-CCCEEEcccCcCcCcCCccccCC----
Q 037844 15 KLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEIL----IKIINLS-RLSYLNLFYSSLSGGLPVSTKYL---- 85 (126)
Q Consensus 15 ~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~----~~~~~l~-~L~~l~l~~~~~~~~~~~~~~~l---- 85 (126)
.+.+++|.+++.. |..+...++|++|++++|.+.+ ..+ ..+..++ +|+++++++|.+++..+..+..+
T Consensus 2 ~~~ls~n~~~~~~--~~~~~~~~~L~~L~Ls~n~l~~-~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~ 78 (362)
T 3goz_A 2 NYKLTLHPGSNPV--EEFTSIPHGVTSLDLSLNNLYS-ISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAI 78 (362)
T ss_dssp EEECCCCTTCCHH--HHHHTSCTTCCEEECTTSCGGG-SCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTS
T ss_pred ccccccccchHHH--HHHHhCCCCceEEEccCCCCCh-HHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhcc
Confidence 3578899998776 5555555669999999999973 444 5677788 89999999999987766666654
Q ss_pred -CCCcEEEeecCccCccchHHH----hcC-CCCcEEEccCCcCeec
Q 037844 86 -RSLKVLAIIKCNFCSRITFLL----RNL-TQLIILHLSQNSFRGR 125 (126)
Q Consensus 86 -~~L~~l~l~~n~~~~~~p~~l----~~~-~~L~~l~l~~n~i~~~ 125 (126)
+.|+.|++++|.+++..+..+ ..+ ++|++|++++|.+++.
T Consensus 79 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 124 (362)
T 3goz_A 79 PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSK 124 (362)
T ss_dssp CTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS
T ss_pred CCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcH
Confidence 899999999999997776644 444 8999999999998763
No 130
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.27 E-value=2.8e-11 Score=82.06 Aligned_cols=86 Identities=20% Similarity=0.089 Sum_probs=72.2
Q ss_pred CceEEEEcCC-CCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCc
Q 037844 11 NHVIKLDLPS-SCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLK 89 (126)
Q Consensus 11 ~~l~~L~ls~-n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~ 89 (126)
.+|++|++++ |.+.... +..+..+++|++|+|++|.+++ ..|..|..+++|+.|++++|++++..+..+..++ |+
T Consensus 31 ~~L~~L~l~~~n~l~~~~--~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~ 106 (347)
T 2ifg_A 31 ENLTELYIENQQHLQHLE--LRDLRGLGELRNLTIVKSGLRF-VAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQ 106 (347)
T ss_dssp SCCSEEECCSCSSCCEEC--GGGSCSCCCCSEEECCSSCCCE-ECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CC
T ss_pred CCeeEEEccCCCCCCCcC--hhHhccccCCCEEECCCCccce-eCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ce
Confidence 5699999996 9999665 5778999999999999999984 5667789999999999999999855444455555 99
Q ss_pred EEEeecCccCc
Q 037844 90 VLAIIKCNFCS 100 (126)
Q Consensus 90 ~l~l~~n~~~~ 100 (126)
.|++.+|++.-
T Consensus 107 ~l~l~~N~~~c 117 (347)
T 2ifg_A 107 ELVLSGNPLHC 117 (347)
T ss_dssp EEECCSSCCCC
T ss_pred EEEeeCCCccC
Confidence 99999998863
No 131
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.22 E-value=2.7e-11 Score=82.41 Aligned_cols=87 Identities=17% Similarity=0.023 Sum_probs=64.6
Q ss_pred CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchh-hhhhCCCCCCE-EEcccCcCcCcCCccccCCCCC
Q 037844 11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEIL-IKIINLSRLSY-LNLFYSSLSGGLPVSTKYLRSL 88 (126)
Q Consensus 11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~l~~L~~-l~l~~~~~~~~~~~~~~~l~~L 88 (126)
.++++|++++|+++... +..|..+++|++|++++|.+.+ .++ ..|..++++.. +.+..|++....+..+..+++|
T Consensus 30 ~~l~~L~Ls~N~i~~i~--~~~f~~l~~L~~L~Ls~N~i~~-~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L 106 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQ--KGAFSGFGDLEKIEISQNDVLE-VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNL 106 (350)
T ss_dssp TTCSEEEEESCCCSEEC--TTSSTTCTTCCEEEEECCTTCC-EECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTC
T ss_pred CCCCEEEccCCcCCCcC--HHHHcCCCCCCEEECcCCCCCC-ccChhHhhcchhhhhhhcccCCcccccCchhhhhcccc
Confidence 57889999999988443 4568889999999999998753 344 34567777665 5556677776666777888888
Q ss_pred cEEEeecCccCc
Q 037844 89 KVLAIIKCNFCS 100 (126)
Q Consensus 89 ~~l~l~~n~~~~ 100 (126)
+++++++|.+..
T Consensus 107 ~~L~l~~n~l~~ 118 (350)
T 4ay9_X 107 QYLLISNTGIKH 118 (350)
T ss_dssp CEEEEEEECCSS
T ss_pred cccccccccccc
Confidence 888888887763
No 132
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.22 E-value=2.9e-12 Score=89.57 Aligned_cols=62 Identities=18% Similarity=0.045 Sum_probs=31.4
Q ss_pred CCCEEEcccCcCcCc----CCccccCCCCCcEEEeecCccCccchHHHhc-----CCCCcEEEccCCcCee
Q 037844 63 RLSYLNLFYSSLSGG----LPVSTKYLRSLKVLAIIKCNFCSRITFLLRN-----LTQLIILHLSQNSFRG 124 (126)
Q Consensus 63 ~L~~l~l~~~~~~~~----~~~~~~~l~~L~~l~l~~n~~~~~~p~~l~~-----~~~L~~l~l~~n~i~~ 124 (126)
+|+.+++++|.+++. ++..+..++.|+.|++++|.+++..+..+.. .++|++|++++|.+++
T Consensus 314 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~ 384 (461)
T 1z7x_W 314 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSD 384 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred cceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCCh
Confidence 455555555544432 2223334456666666666655443333332 4566666666666553
No 133
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.21 E-value=1e-10 Score=82.28 Aligned_cols=101 Identities=17% Similarity=0.126 Sum_probs=51.6
Q ss_pred CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCc-
Q 037844 11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLK- 89 (126)
Q Consensus 11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~- 89 (126)
+++++|++++|++.+ + | .+..+++|++|++++|.+++ +|.. ..+|+++++++|.+++ +| .++.+++|+
T Consensus 131 ~~L~~L~L~~n~l~~-l--p-~~~~l~~L~~L~l~~N~l~~--lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~ 199 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-L--P-ELQNSSFLKIIDVDNNSLKK--LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTA 199 (454)
T ss_dssp TTCCEEECCSSCCSS-C--C-CCTTCTTCCEEECCSSCCSC--CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCE
T ss_pred CCCCEEECcCCCCCC-C--c-ccCCCCCCCEEECCCCcCcc--cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCE
Confidence 466677777776663 4 4 46666666666666666652 3321 2345555555554442 22 233333333
Q ss_pred -------------------EEEeecCccCccchHHHhcCCCCcEEEccCCcCee
Q 037844 90 -------------------VLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRG 124 (126)
Q Consensus 90 -------------------~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~ 124 (126)
.+++++|.+. .+|. ++.+++|+++++++|.+++
T Consensus 200 L~l~~N~l~~l~~~~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~ 251 (454)
T 1jl5_A 200 IYADNNSLKKLPDLPLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT 251 (454)
T ss_dssp EECCSSCCSSCCCCCTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS
T ss_pred EECCCCcCCcCCCCcCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc
Confidence 3444444333 3342 4555566666666665543
No 134
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.20 E-value=1.5e-11 Score=84.60 Aligned_cols=88 Identities=17% Similarity=0.153 Sum_probs=51.2
Q ss_pred ccCceeEeccCcccCc---chhhhhhCCCCCCEEEcccCcCcCcC----CccccCCCCCcEEEeecCccCcc----chHH
Q 037844 37 IHLKWLILLFNKFSGF---EILIKIINLSRLSYLNLFYSSLSGGL----PVSTKYLRSLKVLAIIKCNFCSR----ITFL 105 (126)
Q Consensus 37 ~~L~~L~l~~n~~~~~---~~~~~~~~l~~L~~l~l~~~~~~~~~----~~~~~~l~~L~~l~l~~n~~~~~----~p~~ 105 (126)
+.|++|++++|.+++. .++..+..+++|+++++++|.+++.. +..+...++|+.|++++|.+++. ++..
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~ 234 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARA 234 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHH
T ss_pred CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHH
Confidence 4566666666665410 12233345666777777777665322 23344556777777777777642 2334
Q ss_pred HhcCCCCcEEEccCCcCee
Q 037844 106 LRNLTQLIILHLSQNSFRG 124 (126)
Q Consensus 106 l~~~~~L~~l~l~~n~i~~ 124 (126)
+...++|++|++++|.|++
T Consensus 235 L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 235 AREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHCSSCCEEECTTSSCCH
T ss_pred HHhCCCCCEEeccCCCCCH
Confidence 4456777777777777754
No 135
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.18 E-value=1.1e-10 Score=82.07 Aligned_cols=79 Identities=24% Similarity=0.241 Sum_probs=56.0
Q ss_pred ccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcEEEeecCccCccchHHHhcCCCCcEEE
Q 037844 37 IHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKVLAIIKCNFCSRITFLLRNLTQLIILH 116 (126)
Q Consensus 37 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~l~~~~~L~~l~ 116 (126)
++|++|++++|.++ .+| .++.+++|+++++++|.+++ +|.. .++|++|++++|.+++ +| .++.+++|++++
T Consensus 131 ~~L~~L~L~~n~l~--~lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~ 201 (454)
T 1jl5_A 131 PLLEYLGVSNNQLE--KLP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIY 201 (454)
T ss_dssp TTCCEEECCSSCCS--SCC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEE
T ss_pred CCCCEEECcCCCCC--CCc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEE
Confidence 46777777777776 255 47777778888887777763 4432 2477888888887774 55 477788888888
Q ss_pred ccCCcCee
Q 037844 117 LSQNSFRG 124 (126)
Q Consensus 117 l~~n~i~~ 124 (126)
+++|.+++
T Consensus 202 l~~N~l~~ 209 (454)
T 1jl5_A 202 ADNNSLKK 209 (454)
T ss_dssp CCSSCCSS
T ss_pred CCCCcCCc
Confidence 88888765
No 136
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.12 E-value=2.5e-10 Score=83.16 Aligned_cols=54 Identities=22% Similarity=0.297 Sum_probs=28.6
Q ss_pred CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCc
Q 037844 11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLS 75 (126)
Q Consensus 11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~ 75 (126)
+++++|++++|.++ .+ |. .+++|++|++++|.++ .+|. .+++|++|++++|.++
T Consensus 61 ~~L~~L~L~~N~l~-~l--p~---~l~~L~~L~Ls~N~l~--~lp~---~l~~L~~L~Ls~N~l~ 114 (622)
T 3g06_A 61 AHITTLVIPDNNLT-SL--PA---LPPELRTLEVSGNQLT--SLPV---LPPGLLELSIFSNPLT 114 (622)
T ss_dssp TTCSEEEECSCCCS-CC--CC---CCTTCCEEEECSCCCS--CCCC---CCTTCCEEEECSCCCC
T ss_pred CCCcEEEecCCCCC-CC--CC---cCCCCCEEEcCCCcCC--cCCC---CCCCCCEEECcCCcCC
Confidence 45566666666555 33 32 3455666666666654 2333 3455555555555554
No 137
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.11 E-value=1.6e-10 Score=78.56 Aligned_cols=104 Identities=15% Similarity=0.044 Sum_probs=84.3
Q ss_pred EEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhh-hhhCCCCCCEEEcccCcCcCcCC-ccccCCCCCcE-
Q 037844 14 IKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILI-KIINLSRLSYLNLFYSSLSGGLP-VSTKYLRSLKV- 90 (126)
Q Consensus 14 ~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~l~~L~~l~l~~~~~~~~~~-~~~~~l~~L~~- 90 (126)
++++-++++++ .+ |..+. +++++|++++|.++ .+|. .|..+++|++|++++|.+.+.++ ..|..++.++.
T Consensus 12 ~~v~C~~~~Lt-~i--P~~l~--~~l~~L~Ls~N~i~--~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~ 84 (350)
T 4ay9_X 12 RVFLCQESKVT-EI--PSDLP--RNAIELRFVLTKLR--VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEI 84 (350)
T ss_dssp TEEEEESTTCC-SC--CTTCC--TTCSEEEEESCCCS--EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEE
T ss_pred CEEEecCCCCC-cc--CcCcC--CCCCEEEccCCcCC--CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhh
Confidence 46788888888 66 66553 57999999999998 4554 58899999999999999865555 45778888765
Q ss_pred EEeecCccCccchHHHhcCCCCcEEEccCCcCee
Q 037844 91 LAIIKCNFCSRITFLLRNLTQLIILHLSQNSFRG 124 (126)
Q Consensus 91 l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~~ 124 (126)
+.+..|++....|..+..+++|+++++++|.+++
T Consensus 85 l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~ 118 (350)
T 4ay9_X 85 RIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH 118 (350)
T ss_dssp EEEEETTCCEECTTSBCCCTTCCEEEEEEECCSS
T ss_pred hcccCCcccccCchhhhhcccccccccccccccc
Confidence 5677899996667888999999999999998864
No 138
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.08 E-value=4.7e-11 Score=82.12 Aligned_cols=111 Identities=17% Similarity=0.123 Sum_probs=81.1
Q ss_pred CceEEEEcCCCCcccccCCCccc-cccccCceeEeccCcccCcchhhhhh-----CCCCCCEEEcccCcCcCc----CCc
Q 037844 11 NHVIKLDLPSSCLQDSINSSSGL-FKLIHLKWLILLFNKFSGFEILIKII-----NLSRLSYLNLFYSSLSGG----LPV 80 (126)
Q Consensus 11 ~~l~~L~ls~n~l~~~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~-----~l~~L~~l~l~~~~~~~~----~~~ 80 (126)
.++++|++++|.+.+.. ...+ ..+++|++|++++|.+.+ .....++ ..+.|+.+++++|.++.. ++.
T Consensus 101 ~~L~~L~Ls~n~l~~~~--~~~l~~~L~~L~~L~Ls~n~l~~-~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 177 (372)
T 3un9_A 101 HALDEVNLASCQLDPAG--LRTLLPVFLRARKLGLQLNSLGP-EACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLME 177 (372)
T ss_dssp SCEEEEECTTCCCCHHH--HHHTHHHHHTEEEEECCSSCCCH-HHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHH--HHHHHHHHHhccHhhcCCCCCCH-HHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHH
Confidence 58899999999887543 2222 345788999999998862 3333332 357899999999998642 233
Q ss_pred cccCCCCCcEEEeecCccCccc----hHHHhcCCCCcEEEccCCcCee
Q 037844 81 STKYLRSLKVLAIIKCNFCSRI----TFLLRNLTQLIILHLSQNSFRG 124 (126)
Q Consensus 81 ~~~~l~~L~~l~l~~n~~~~~~----p~~l~~~~~L~~l~l~~n~i~~ 124 (126)
.+...++|++|++++|.+++.. +..+...++|+.|++++|.|++
T Consensus 178 ~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~ 225 (372)
T 3un9_A 178 GLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD 225 (372)
T ss_dssp HHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred HHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence 3466788999999999987533 4566777899999999999875
No 139
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.99 E-value=3.5e-10 Score=70.72 Aligned_cols=112 Identities=15% Similarity=0.059 Sum_probs=85.2
Q ss_pred CCceEEEEcCCC-Ccccc----cCCCccccccccCceeEeccCcccCc---chhhhhhCCCCCCEEEcccCcCcCc----
Q 037844 10 RNHVIKLDLPSS-CLQDS----INSSSGLFKLIHLKWLILLFNKFSGF---EILIKIINLSRLSYLNLFYSSLSGG---- 77 (126)
Q Consensus 10 ~~~l~~L~ls~n-~l~~~----~~~~~~~~~l~~L~~L~l~~n~~~~~---~~~~~~~~l~~L~~l~l~~~~~~~~---- 77 (126)
.+++++|++++| .+... + ...+...++|++|++++|.+... .+...+...+.|++|++++|.++..
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l--~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~ 112 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKAC--AEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 112 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHH--HHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHH--HHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence 478999999999 88743 2 23445568899999999998621 1344455668999999999999853
Q ss_pred CCccccCCCCCcEEEe--ecCccCcc----chHHHhcCCCCcEEEccCCcCe
Q 037844 78 LPVSTKYLRSLKVLAI--IKCNFCSR----ITFLLRNLTQLIILHLSQNSFR 123 (126)
Q Consensus 78 ~~~~~~~l~~L~~l~l--~~n~~~~~----~p~~l~~~~~L~~l~l~~n~i~ 123 (126)
+...+...++|+.|++ ++|.+... +...+...++|+.|++++|.+.
T Consensus 113 l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 113 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 2345566789999999 88999864 3445667789999999999875
No 140
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.92 E-value=4.5e-09 Score=70.84 Aligned_cols=103 Identities=14% Similarity=-0.051 Sum_probs=84.4
Q ss_pred CCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCC-EEEcccCcCcCcCCccccCCCCC
Q 037844 10 RNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLS-YLNLFYSSLSGGLPVSTKYLRSL 88 (126)
Q Consensus 10 ~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~-~l~l~~~~~~~~~~~~~~~l~~L 88 (126)
.++++++++++|.++... +..|..+.+|+.+++..| +. ..-+..|..+.+|+ .++++. .++...+..|..+++|
T Consensus 225 ~~~L~~l~L~~n~i~~I~--~~aF~~~~~L~~l~l~~n-i~-~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L 299 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIP--DFTFAQKKYLLKIKLPHN-LK-TIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNL 299 (329)
T ss_dssp CTTCCEEECTTBCCCEEC--TTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTE
T ss_pred cCCCeEEECCCCCcceec--HhhhhCCCCCCEEECCcc-cc-eehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccC
Confidence 468999999999888544 567888999999999988 55 24456688899999 999988 6665666788999999
Q ss_pred cEEEeecCccCccchHHHhcCCCCcEEEc
Q 037844 89 KVLAIIKCNFCSRITFLLRNLTQLIILHL 117 (126)
Q Consensus 89 ~~l~l~~n~~~~~~p~~l~~~~~L~~l~l 117 (126)
+.+++.+|.+....+..|.++++|+.++.
T Consensus 300 ~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 300 RYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred CEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 99999999998666668889999998874
No 141
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.91 E-value=2.4e-10 Score=82.06 Aligned_cols=113 Identities=18% Similarity=0.111 Sum_probs=65.8
Q ss_pred CCceEEEEcCCCCcccccCCCccccc-ccc-CceeEeccCc-ccCcchhhhhhCCCCCCEEEcccCcCcCcCCc----cc
Q 037844 10 RNHVIKLDLPSSCLQDSINSSSGLFK-LIH-LKWLILLFNK-FSGFEILIKIINLSRLSYLNLFYSSLSGGLPV----ST 82 (126)
Q Consensus 10 ~~~l~~L~ls~n~l~~~~~~~~~~~~-l~~-L~~L~l~~n~-~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~----~~ 82 (126)
.+++++|++++|.+++.. +..+.. ++. |++|++++|. +....++.....+++|++|++++|.+.+.... ..
T Consensus 111 ~~~L~~L~L~~~~i~~~~--~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~ 188 (592)
T 3ogk_B 111 LRQLKSVHFRRMIVSDLD--LDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELA 188 (592)
T ss_dssp CTTCCEEEEESCBCCHHH--HHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHH
T ss_pred CCCCCeEEeeccEecHHH--HHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHH
Confidence 356777788777766543 333433 233 7777777765 22111223334567777777777766544221 23
Q ss_pred cCCCCCcEEEeecCccC----ccchHHHhcCCCCcEEEccCCcCee
Q 037844 83 KYLRSLKVLAIIKCNFC----SRITFLLRNLTQLIILHLSQNSFRG 124 (126)
Q Consensus 83 ~~l~~L~~l~l~~n~~~----~~~p~~l~~~~~L~~l~l~~n~i~~ 124 (126)
..+++|+.|+++.|.+. +.++..+..+++|+.|++++|.+.+
T Consensus 189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~ 234 (592)
T 3ogk_B 189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE 234 (592)
T ss_dssp HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG
T ss_pred hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH
Confidence 45667777777777665 3444555666777777777766543
No 142
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.81 E-value=9e-09 Score=73.94 Aligned_cols=35 Identities=11% Similarity=0.214 Sum_probs=16.6
Q ss_pred CCCCCcEEEeecCccCccch-HHHhcCCCCcEEEcc
Q 037844 84 YLRSLKVLAIIKCNFCSRIT-FLLRNLTQLIILHLS 118 (126)
Q Consensus 84 ~l~~L~~l~l~~n~~~~~~p-~~l~~~~~L~~l~l~ 118 (126)
.+++|+.|++++|.+++... ..+..+++|+.|++.
T Consensus 291 ~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 291 FAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp GGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred hcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence 34455555555555443222 223455555555554
No 143
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.80 E-value=1.4e-08 Score=66.91 Aligned_cols=80 Identities=18% Similarity=0.206 Sum_probs=50.4
Q ss_pred ccccCceeEeccCcccCc-chhhhhhCCCCCCEEEcccCcCcCcCCccccCCC--CCcEEEeecCccCccch-------H
Q 037844 35 KLIHLKWLILLFNKFSGF-EILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLR--SLKVLAIIKCNFCSRIT-------F 104 (126)
Q Consensus 35 ~l~~L~~L~l~~n~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~--~L~~l~l~~n~~~~~~p-------~ 104 (126)
.+++|+.|++++|.+.+- .++..+..+++|+.|++++|.+.+. ..+..+. .|+.|++.+|++++.+| .
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 456777777777777620 1334455677777777777777643 2233333 77777777777775444 2
Q ss_pred HHhcCCCCcEEE
Q 037844 105 LLRNLTQLIILH 116 (126)
Q Consensus 105 ~l~~~~~L~~l~ 116 (126)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 456677777776
No 144
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.77 E-value=5.2e-09 Score=75.15 Aligned_cols=109 Identities=17% Similarity=0.066 Sum_probs=70.9
Q ss_pred CCceEEEEcCCCCcccccCCCcccc-ccccCceeEeccC-cccCcchhhhhhCCCCCCEEEcccCcCcCcCCcccc----
Q 037844 10 RNHVIKLDLPSSCLQDSINSSSGLF-KLIHLKWLILLFN-KFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTK---- 83 (126)
Q Consensus 10 ~~~l~~L~ls~n~l~~~~~~~~~~~-~l~~L~~L~l~~n-~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~---- 83 (126)
.+++++|++++|.+++.. +..+. .+++|++|++.+| .+....++.....+++|++|++++|.+++..+..+.
T Consensus 104 ~~~L~~L~L~~~~~~~~~--~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDC--LELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD 181 (594)
T ss_dssp CTTCCEEEEESCBCCHHH--HHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred CCCCCeEEeeCcEEcHHH--HHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence 357888888888777654 44444 5778888888888 444112444445788888888888887654443332
Q ss_pred CCCCCcEEEeecCc--cCc-cchHHHhcCCCCcEEEccCC
Q 037844 84 YLRSLKVLAIIKCN--FCS-RITFLLRNLTQLIILHLSQN 120 (126)
Q Consensus 84 ~l~~L~~l~l~~n~--~~~-~~p~~l~~~~~L~~l~l~~n 120 (126)
.+++|+.|++++|. +.. .++.....+++|++|++++|
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 55678888888775 321 12233355678888888776
No 145
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.69 E-value=4e-09 Score=75.76 Aligned_cols=86 Identities=19% Similarity=0.149 Sum_probs=42.1
Q ss_pred cccCceeEeccCcccCcchhhhhhC-CCCCCEEEcccCcCcCcCCccc-cCCCCCcEEEeecCccCccchH-HHhcCCCC
Q 037844 36 LIHLKWLILLFNKFSGFEILIKIIN-LSRLSYLNLFYSSLSGGLPVST-KYLRSLKVLAIIKCNFCSRITF-LLRNLTQL 112 (126)
Q Consensus 36 l~~L~~L~l~~n~~~~~~~~~~~~~-l~~L~~l~l~~~~~~~~~~~~~-~~l~~L~~l~l~~n~~~~~~p~-~l~~~~~L 112 (126)
+++|++|++++ .+++ .....++. +++|+.+++++|.+++..+..+ ..+++|+.|++++|.+++..+. ....+++|
T Consensus 431 ~~~L~~L~L~~-~l~~-~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L 508 (594)
T 2p1m_B 431 CKDLRRLSLSG-LLTD-KVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETM 508 (594)
T ss_dssp CTTCCEEECCS-SCCH-HHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGS
T ss_pred CCCccEEeecC-cccH-HHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCC
Confidence 34455555544 3331 22233333 5556666666665543322222 3456666666666666433332 23345666
Q ss_pred cEEEccCCcCe
Q 037844 113 IILHLSQNSFR 123 (126)
Q Consensus 113 ~~l~l~~n~i~ 123 (126)
+.|++++|+++
T Consensus 509 ~~L~l~~~~~~ 519 (594)
T 2p1m_B 509 RSLWMSSCSVS 519 (594)
T ss_dssp SEEEEESSCCB
T ss_pred CEEeeeCCCCC
Confidence 66666666553
No 146
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.69 E-value=2.4e-08 Score=61.89 Aligned_cols=82 Identities=16% Similarity=0.148 Sum_probs=37.6
Q ss_pred cCceeEeccCcccCcchhhhhhCCCCCCEEEcccCc-CcCcCCccccCC----CCCcEEEeecCc-cCccchHHHhcCCC
Q 037844 38 HLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSS-LSGGLPVSTKYL----RSLKVLAIIKCN-FCSRITFLLRNLTQ 111 (126)
Q Consensus 38 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~-~~~~~~~~~~~l----~~L~~l~l~~n~-~~~~~p~~l~~~~~ 111 (126)
.|++|+++++.++. .--..+..+++|+.|+++++. +++..-..+..+ ++|+.|++++|. +++.-...+.++++
T Consensus 62 ~L~~LDLs~~~Itd-~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 62 KIQAIDATDSCIMS-IGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CEEEEEEESCCCCG-GGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred eEeEEeCcCCCccH-HHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 35555555555442 222334455555555555542 333222223332 245555555543 44443444445555
Q ss_pred CcEEEccCC
Q 037844 112 LIILHLSQN 120 (126)
Q Consensus 112 L~~l~l~~n 120 (126)
|++|+++++
T Consensus 141 L~~L~L~~c 149 (176)
T 3e4g_A 141 LKYLFLSDL 149 (176)
T ss_dssp CCEEEEESC
T ss_pred CCEEECCCC
Confidence 555555554
No 147
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.68 E-value=1.7e-07 Score=63.10 Aligned_cols=85 Identities=9% Similarity=-0.112 Sum_probs=57.3
Q ss_pred cccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCc-EEEeecCccCccchHHHhcCCCCcE
Q 037844 36 LIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLK-VLAIIKCNFCSRITFLLRNLTQLII 114 (126)
Q Consensus 36 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~-~l~l~~n~~~~~~p~~l~~~~~L~~ 114 (126)
+++|+.+++..|.++ ...+..|..+.+|+.++++.| +.......|..+.+|+ .+++.. .++...+..|..+++|+.
T Consensus 225 ~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 225 MPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY 301 (329)
T ss_dssp CTTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred cCCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence 456777777777665 233345667777777777776 5444455677777787 777766 565444567778888888
Q ss_pred EEccCCcCe
Q 037844 115 LHLSQNSFR 123 (126)
Q Consensus 115 l~l~~n~i~ 123 (126)
+++..|.++
T Consensus 302 l~l~~n~i~ 310 (329)
T 3sb4_A 302 VLATGDKIT 310 (329)
T ss_dssp EEECSSCCC
T ss_pred EEeCCCccC
Confidence 888776654
No 148
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.65 E-value=3.9e-08 Score=64.81 Aligned_cols=78 Identities=23% Similarity=0.143 Sum_probs=60.3
Q ss_pred CCceEEEEcCCCCccc--ccCCCccccccccCceeEeccCcccCcchhhhhhCCC--CCCEEEcccCcCcCcCCc-----
Q 037844 10 RNHVIKLDLPSSCLQD--SINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLS--RLSYLNLFYSSLSGGLPV----- 80 (126)
Q Consensus 10 ~~~l~~L~ls~n~l~~--~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~--~L~~l~l~~~~~~~~~~~----- 80 (126)
.++|++|++++|.+.+ .+ +..+..+++|+.|+|++|.+.+ + ..+..+. .|+.|++.+|.+.+.+|.
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l--~~~~~~l~~L~~L~Ls~N~i~~--~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~ 243 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDM--SSIVQKAPNLKILNLSGNELKS--E-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYI 243 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGG--TTHHHHSTTCCEEECTTSCCCS--G-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHH
T ss_pred CCCCCEEECCCCCCCCCccc--hhHHhhCCCCCEEECCCCccCC--c-hhhhhcccCCcceEEccCCcCccccCcchhHH
Confidence 4789999999999986 34 4556689999999999999984 2 2234444 899999999999876552
Q ss_pred --cccCCCCCcEEE
Q 037844 81 --STKYLRSLKVLA 92 (126)
Q Consensus 81 --~~~~l~~L~~l~ 92 (126)
.+..+++|+.||
T Consensus 244 ~~il~~~P~L~~LD 257 (267)
T 3rw6_A 244 SAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHCTTCCEES
T ss_pred HHHHHHCcccCeEC
Confidence 245788888864
No 149
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.65 E-value=2.6e-08 Score=61.73 Aligned_cols=86 Identities=13% Similarity=0.103 Sum_probs=68.4
Q ss_pred CceEEEEcCCCCcccccCCCccccccccCceeEeccCc-ccCcchhhhhhCC----CCCCEEEcccC-cCcCcCCccccC
Q 037844 11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNK-FSGFEILIKIINL----SRLSYLNLFYS-SLSGGLPVSTKY 84 (126)
Q Consensus 11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~l----~~L~~l~l~~~-~~~~~~~~~~~~ 84 (126)
-.|+.|+++++.+++.- -..+..+++|+.|++++|. ++ +..-..++.+ ++|++|+++++ ++++.....+..
T Consensus 61 ~~L~~LDLs~~~Itd~G--L~~L~~~~~L~~L~L~~C~~It-D~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~ 137 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIG--FDHMEGLQYVEKIRLCKCHYIE-DGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHH 137 (176)
T ss_dssp CCEEEEEEESCCCCGGG--GGGGTTCSCCCEEEEESCTTCC-HHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGG
T ss_pred ceEeEEeCcCCCccHHH--HHHhcCCCCCCEEEeCCCCccC-HHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhc
Confidence 36999999999988765 4567889999999999996 66 3444556664 47999999997 477655566778
Q ss_pred CCCCcEEEeecCc-cC
Q 037844 85 LRSLKVLAIIKCN-FC 99 (126)
Q Consensus 85 l~~L~~l~l~~n~-~~ 99 (126)
+++|+.|++++|+ ++
T Consensus 138 ~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 138 FRNLKYLFLSDLPGVK 153 (176)
T ss_dssp CTTCCEEEEESCTTCC
T ss_pred CCCCCEEECCCCCCCC
Confidence 9999999999997 44
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.52 E-value=2.7e-08 Score=68.28 Aligned_cols=110 Identities=17% Similarity=0.166 Sum_probs=54.3
Q ss_pred CCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhh--CCCCCCEEEccc--CcCcCc-----CC
Q 037844 9 QRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKII--NLSRLSYLNLFY--SSLSGG-----LP 79 (126)
Q Consensus 9 ~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~--~l~~L~~l~l~~--~~~~~~-----~~ 79 (126)
..++|++|.+++|.-. .+ +. + .+++|+.|++..+.+.. .....++ .+++|+.|++.. +...+. +.
T Consensus 170 ~~P~L~~L~L~g~~~l-~l--~~-~-~~~~L~~L~L~~~~l~~-~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 170 AMPLLNNLKIKGTNNL-SI--GK-K-PRPNLKSLEIISGGLPD-SVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp TCTTCCEEEEECCBTC-BC--CS-C-BCTTCSEEEEECSBCCH-HHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred cCCCCcEEEEeCCCCc-ee--cc-c-cCCCCcEEEEecCCCCh-HHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence 3467888888877311 22 22 2 25667777777666642 2223333 466677766642 111100 00
Q ss_pred ccc--cCCCCCcEEEeecCccCccchHHHh---cCCCCcEEEccCCcCee
Q 037844 80 VST--KYLRSLKVLAIIKCNFCSRITFLLR---NLTQLIILHLSQNSFRG 124 (126)
Q Consensus 80 ~~~--~~l~~L~~l~l~~n~~~~~~p~~l~---~~~~L~~l~l~~n~i~~ 124 (126)
..+ ..+++|+.|++..|.+.+..+..+. .+++|++|+++.|.+++
T Consensus 244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d 293 (362)
T 2ra8_A 244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD 293 (362)
T ss_dssp GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence 111 1345666666666655543333332 24455666665555543
No 151
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.45 E-value=1.9e-07 Score=58.22 Aligned_cols=93 Identities=12% Similarity=-0.023 Sum_probs=70.5
Q ss_pred cccccccCceeEeccC-cccCc---chhhhhhCCCCCCEEEcccCcCcCcC----CccccCCCCCcEEEeecCccCcc--
Q 037844 32 GLFKLIHLKWLILLFN-KFSGF---EILIKIINLSRLSYLNLFYSSLSGGL----PVSTKYLRSLKVLAIIKCNFCSR-- 101 (126)
Q Consensus 32 ~~~~l~~L~~L~l~~n-~~~~~---~~~~~~~~l~~L~~l~l~~~~~~~~~----~~~~~~l~~L~~l~l~~n~~~~~-- 101 (126)
.+...+.|++|++++| .+... .+...+...+.|++|++++|.+.... ...+...+.|+.|++++|.+.+.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 4456788999999999 87521 13445566789999999999997432 23344567899999999999864
Q ss_pred --chHHHhcCCCCcEEEc--cCCcCee
Q 037844 102 --ITFLLRNLTQLIILHL--SQNSFRG 124 (126)
Q Consensus 102 --~p~~l~~~~~L~~l~l--~~n~i~~ 124 (126)
+...+...++|++|++ ++|.|+.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~ 137 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGN 137 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCH
Confidence 3456677789999999 8898875
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.45 E-value=9.5e-07 Score=60.59 Aligned_cols=113 Identities=15% Similarity=0.166 Sum_probs=75.7
Q ss_pred CCceEEEEcCCCCcccccCCCcccc--ccccCceeEecc--CcccCc----chhhhh--hCCCCCCEEEcccCcCcCcCC
Q 037844 10 RNHVIKLDLPSSCLQDSINSSSGLF--KLIHLKWLILLF--NKFSGF----EILIKI--INLSRLSYLNLFYSSLSGGLP 79 (126)
Q Consensus 10 ~~~l~~L~ls~n~l~~~~~~~~~~~--~l~~L~~L~l~~--n~~~~~----~~~~~~--~~l~~L~~l~l~~~~~~~~~~ 79 (126)
.++|+.|++..+.+.... ...+. .+++|+.|++.. +...+. .+...+ ..+++|+.|++.+|.+.+..+
T Consensus 192 ~~~L~~L~L~~~~l~~~~--l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~ 269 (362)
T 2ra8_A 192 RPNLKSLEIISGGLPDSV--VEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVV 269 (362)
T ss_dssp CTTCSEEEEECSBCCHHH--HHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHH
T ss_pred CCCCcEEEEecCCCChHH--HHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHH
Confidence 468999999988876433 22333 678899998853 221111 111222 247899999999888764332
Q ss_pred ccc---cCCCCCcEEEeecCccCccc----hHHHhcCCCCcEEEccCCcCee
Q 037844 80 VST---KYLRSLKVLAIIKCNFCSRI----TFLLRNLTQLIILHLSQNSFRG 124 (126)
Q Consensus 80 ~~~---~~l~~L~~l~l~~n~~~~~~----p~~l~~~~~L~~l~l~~n~i~~ 124 (126)
..+ ..++.|+.|+++.|.+.+.. +..+..+++|+.|+++.|.|+.
T Consensus 270 ~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 270 EMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp HHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred HHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 222 35789999999999988643 3334567899999999998875
No 153
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.97 E-value=4.4e-05 Score=52.96 Aligned_cols=90 Identities=10% Similarity=-0.073 Sum_probs=49.8
Q ss_pred CccccccccCceeEeccCcccC----cchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcEEEeecCccCccchHH
Q 037844 30 SSGLFKLIHLKWLILLFNKFSG----FEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKVLAIIKCNFCSRITFL 105 (126)
Q Consensus 30 ~~~~~~l~~L~~L~l~~n~~~~----~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~ 105 (126)
...|..+++|+.+.+..+.+.. ...+..|..|++|+.+.++. .+.......|..+..|+.+.+..+ +...-...
T Consensus 264 ~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~a 341 (401)
T 4fdw_A 264 SRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSA 341 (401)
T ss_dssp TTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTS
T ss_pred hhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHh
Confidence 3455566667776666654320 02234455666677776663 344333445666667777766433 44333445
Q ss_pred HhcCCCCcEEEccCCcC
Q 037844 106 LRNLTQLIILHLSQNSF 122 (126)
Q Consensus 106 l~~~~~L~~l~l~~n~i 122 (126)
|..+ +|+.+++.+|.+
T Consensus 342 F~~~-~L~~l~l~~n~~ 357 (401)
T 4fdw_A 342 FNNT-GIKEVKVEGTTP 357 (401)
T ss_dssp SSSS-CCCEEEECCSSC
T ss_pred CCCC-CCCEEEEcCCCC
Confidence 6666 677777766543
No 154
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.96 E-value=5.5e-06 Score=52.20 Aligned_cols=109 Identities=14% Similarity=0.090 Sum_probs=76.5
Q ss_pred CceEEEEcCCC-Ccccc----cCCCccccccccCceeEeccCcccCcc----hhhhhhCCCCCCEEEcccCcCcCcCC--
Q 037844 11 NHVIKLDLPSS-CLQDS----INSSSGLFKLIHLKWLILLFNKFSGFE----ILIKIINLSRLSYLNLFYSSLSGGLP-- 79 (126)
Q Consensus 11 ~~l~~L~ls~n-~l~~~----~~~~~~~~~l~~L~~L~l~~n~~~~~~----~~~~~~~l~~L~~l~l~~~~~~~~~~-- 79 (126)
+.+++|++++| ++.+. + ...+..-..|+.|+|++|.+. +. +.+.+..-..|+.|+++.|.++....
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~l--a~aL~~N~~L~~L~L~~n~ig-d~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSL--IEAACNSKHIEKFSLANTAIS-DSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHH--HHHHTTCSCCCEEECTTSCCB-HHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHH--HHHHhhCCCcCEEEccCCCCC-hHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 67999999985 77642 2 234455578999999999986 22 33344456889999999999974432
Q ss_pred --ccccCCCCCcEEEeecC---ccCc----cchHHHhcCCCCcEEEccCCcC
Q 037844 80 --VSTKYLRSLKVLAIIKC---NFCS----RITFLLRNLTQLIILHLSQNSF 122 (126)
Q Consensus 80 --~~~~~l~~L~~l~l~~n---~~~~----~~p~~l~~~~~L~~l~l~~n~i 122 (126)
..+..-..|+.|++++| .+.. .+...+..-++|+.++++.|.+
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 23344467999999765 4443 2445667778999999987754
No 155
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.92 E-value=8.5e-05 Score=51.54 Aligned_cols=15 Identities=13% Similarity=0.197 Sum_probs=7.3
Q ss_pred hhhCCCCCCEEEccc
Q 037844 57 KIINLSRLSYLNLFY 71 (126)
Q Consensus 57 ~~~~l~~L~~l~l~~ 71 (126)
.|..+++|+.++++.
T Consensus 221 aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 221 AFLKTSQLKTIEIPE 235 (401)
T ss_dssp TTTTCTTCCCEECCT
T ss_pred HhhCCCCCCEEecCC
Confidence 344455555555543
No 156
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.55 E-value=0.0014 Score=45.07 Aligned_cols=104 Identities=12% Similarity=0.004 Sum_probs=61.4
Q ss_pred CceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcE
Q 037844 11 NHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKV 90 (126)
Q Consensus 11 ~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~ 90 (126)
..++.+.+..+... .- ...+..+..|+.+.+... +. ..-...|..+.+|+.+.++.+ ++......|..+.+|+.
T Consensus 265 ~~L~~i~lp~~~~~-I~--~~aF~~c~~L~~i~l~~~-i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~ 338 (394)
T 4gt6_A 265 AYLASVKMPDSVVS-IG--TGAFMNCPALQDIEFSSR-IT-ELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLER 338 (394)
T ss_dssp SSCCEEECCTTCCE-EC--TTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCE
T ss_pred ccccEEecccccce-ec--CcccccccccccccCCCc-cc-ccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCE
Confidence 45566666554322 22 345556667777766532 22 122345666778888887654 33333455777778888
Q ss_pred EEeecCccCccchHHHhcCCCCcEEEccCCc
Q 037844 91 LAIIKCNFCSRITFLLRNLTQLIILHLSQNS 121 (126)
Q Consensus 91 l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~ 121 (126)
+.+..+ ++..-...|.++.+|+.+++.++.
T Consensus 339 i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 339 IAIPSS-VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp EEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred EEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence 877543 553344567777888888777653
No 157
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.45 E-value=0.00015 Score=45.64 Aligned_cols=87 Identities=11% Similarity=0.021 Sum_probs=62.6
Q ss_pred cccccCceeEeccC-cccCc---chhhhhhCCCCCCEEEcccCcCcCcCCccc----cCCCCCcEEEeecCccCccch--
Q 037844 34 FKLIHLKWLILLFN-KFSGF---EILIKIINLSRLSYLNLFYSSLSGGLPVST----KYLRSLKVLAIIKCNFCSRIT-- 103 (126)
Q Consensus 34 ~~l~~L~~L~l~~n-~~~~~---~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~----~~l~~L~~l~l~~n~~~~~~p-- 103 (126)
..-+.|++|++++| .+... .+.+.+..-..|+.|++++|.+.+.....+ ..-..|+.|+|+.|.+.....
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 34467999999986 76410 134455566889999999999985433333 345789999999999986443
Q ss_pred --HHHhcCCCCcEEEccCC
Q 037844 104 --FLLRNLTQLIILHLSQN 120 (126)
Q Consensus 104 --~~l~~~~~L~~l~l~~n 120 (126)
+.+..-..|+.|++++|
T Consensus 118 la~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHTTTTCCCSEEECCCC
T ss_pred HHHHHhhCCceeEEECCCC
Confidence 34555678999999865
No 158
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.36 E-value=0.00069 Score=39.71 Aligned_cols=58 Identities=10% Similarity=-0.085 Sum_probs=39.4
Q ss_pred ceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcEEEeecCccC
Q 037844 40 KWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKVLAIIKCNFC 99 (126)
Q Consensus 40 ~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~ 99 (126)
..++-+++.++...+|..+ .++++.|++++|+++..-+..|..++.|+.++|.+|++.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 3566666665411345432 346889999999888555556778888888988888763
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.23 E-value=0.0021 Score=43.85 Aligned_cols=84 Identities=13% Similarity=0.017 Sum_probs=45.2
Q ss_pred cccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcEEEeecCccCccchHHHhcCCC
Q 037844 32 GLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKVLAIIKCNFCSRITFLLRNLTQ 111 (126)
Q Consensus 32 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~l~~~~~ 111 (126)
.+..+..|+.+.+..+ +. ..-...+..+.+|+.+.+..+.++......|..+.+|+.+.+..+ ++..-...|.++.+
T Consensus 258 aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~ 334 (379)
T 4h09_A 258 LLQNCTALKTLNFYAK-VK-TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKA 334 (379)
T ss_dssp TTTTCTTCCEEEECCC-CS-EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred ccceeehhcccccccc-ce-eccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCC
Confidence 3444455555555432 22 112234556677777777666655444455666677777766433 44233345666666
Q ss_pred CcEEEcc
Q 037844 112 LIILHLS 118 (126)
Q Consensus 112 L~~l~l~ 118 (126)
|+.+.+.
T Consensus 335 L~~i~ip 341 (379)
T 4h09_A 335 LSTISYP 341 (379)
T ss_dssp CCCCCCC
T ss_pred CCEEEEC
Confidence 6666654
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.15 E-value=0.0022 Score=44.08 Aligned_cols=106 Identities=10% Similarity=-0.021 Sum_probs=68.2
Q ss_pred CCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCC
Q 037844 9 QRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSL 88 (126)
Q Consensus 9 ~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L 88 (126)
..+.|+.+.+... +...- ...|..+.+|+.+.+..+ ++ ..-...|..|.+|+.+.++.+ ++......|..+.+|
T Consensus 286 ~c~~L~~i~l~~~-i~~I~--~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L 359 (394)
T 4gt6_A 286 NCPALQDIEFSSR-ITELP--ESVFAGCISLKSIDIPEG-IT-QILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTAL 359 (394)
T ss_dssp TCTTCCEEECCTT-CCEEC--TTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTC
T ss_pred cccccccccCCCc-ccccC--ceeecCCCCcCEEEeCCc-cc-EehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCC
Confidence 3467888888754 44333 466788899999999765 33 133456888999999999765 444445678899999
Q ss_pred cEEEeecCccCccchHHHhcCCCCcEEEccCCcCe
Q 037844 89 KVLAIIKCNFCSRITFLLRNLTQLIILHLSQNSFR 123 (126)
Q Consensus 89 ~~l~l~~n~~~~~~p~~l~~~~~L~~l~l~~n~i~ 123 (126)
+.+++.++... ...+..+..|+.+.+..+.+.
T Consensus 360 ~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~~ 391 (394)
T 4gt6_A 360 NNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSID 391 (394)
T ss_dssp CEEEESSCHHH---HHTCBCCCCC-----------
T ss_pred CEEEECCceee---hhhhhccCCCCEEEeCCCCEE
Confidence 99999887644 234567788998888776553
No 161
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.03 E-value=0.0034 Score=43.13 Aligned_cols=84 Identities=14% Similarity=0.007 Sum_probs=50.0
Q ss_pred ccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcEEEeecCccCccchHHHhcCCCC
Q 037844 33 LFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKVLAIIKCNFCSRITFLLRNLTQL 112 (126)
Q Consensus 33 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~l~~~~~L 112 (126)
+..+.+|+.+.+..+ +. ..-...|..+.+|+.++++.+ ++......|..+.+|+.+.+..+ +...-...|.++.+|
T Consensus 293 F~~~~~L~~i~l~~~-i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L 368 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS-VK-FIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINL 368 (394)
T ss_dssp TTTCTTCCEEEECTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTC
T ss_pred ccccccccccccccc-cc-eechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCC
Confidence 344555666665543 22 122344666777887777644 44334455677778888777655 543444567777788
Q ss_pred cEEEccCC
Q 037844 113 IILHLSQN 120 (126)
Q Consensus 113 ~~l~l~~n 120 (126)
+.+++..+
T Consensus 369 ~~i~lp~~ 376 (394)
T 4fs7_A 369 KKVELPKR 376 (394)
T ss_dssp CEEEEEGG
T ss_pred CEEEECCC
Confidence 88777543
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.02 E-value=0.0018 Score=37.92 Aligned_cols=57 Identities=16% Similarity=0.021 Sum_probs=43.1
Q ss_pred EEEEcCCCCcc-cccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCc
Q 037844 14 IKLDLPSSCLQ-DSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLS 75 (126)
Q Consensus 14 ~~L~ls~n~l~-~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~ 75 (126)
+.++-+++.++ ..+ |..+. .++++|+|++|.++ ...+..|..+++|+.+++.+|.+.
T Consensus 11 ~~v~Cs~~~L~~~~v--P~~lp--~~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASL--PTAFP--VDTTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTS--CSCCC--TTCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccC--CCCCC--cCCCEEECCCCcCC-ccChhhhhhccccCEEEecCCCee
Confidence 47888888876 244 54433 46999999999998 344455778999999999999875
No 163
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.86 E-value=0.004 Score=42.78 Aligned_cols=99 Identities=13% Similarity=-0.012 Sum_probs=69.6
Q ss_pred CCCceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCC
Q 037844 9 QRNHVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSL 88 (126)
Q Consensus 9 ~~~~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L 88 (126)
...+++.+.+..+ +...- ...+..+.+|+.+++..+ ++ ..-...|..+.+|+.+.++.+ +.......|..+.+|
T Consensus 295 ~~~~L~~i~l~~~-i~~I~--~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L 368 (394)
T 4fs7_A 295 GCSSLTEVKLLDS-VKFIG--EEAFESCTSLVSIDLPYL-VE-EIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINL 368 (394)
T ss_dssp TCTTCCEEEECTT-CCEEC--TTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTC
T ss_pred ccccccccccccc-cceec--hhhhcCCCCCCEEEeCCc-cc-EEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCC
Confidence 3467788888765 44333 466788899999998754 44 233466788999999999877 554555678899999
Q ss_pred cEEEeecCccCccchHHHhcCCCCcEE
Q 037844 89 KVLAIIKCNFCSRITFLLRNLTQLIIL 115 (126)
Q Consensus 89 ~~l~l~~n~~~~~~p~~l~~~~~L~~l 115 (126)
+.+++..+ +. .+...|..+++|+.+
T Consensus 369 ~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 369 KKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp CEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred CEEEECCC-CE-EhhheecCCCCCcEE
Confidence 99999754 33 334566777777654
No 164
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.41 E-value=0.046 Score=37.11 Aligned_cols=103 Identities=11% Similarity=0.059 Sum_probs=66.9
Q ss_pred ceEEEEcCCCCcccccCCCccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccCcCcCcCCccccCCCCCcEE
Q 037844 12 HVIKLDLPSSCLQDSINSSSGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYSSLSGGLPVSTKYLRSLKVL 91 (126)
Q Consensus 12 ~l~~L~ls~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l 91 (126)
.++.+.+..+ +.... ...+..+..|+.+.+..+ ++ ..-...+..+..++.+.++.+ +.......|..+..|+.+
T Consensus 218 ~l~~i~~~~~-~~~i~--~~~f~~~~~L~~i~lp~~-v~-~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i 291 (379)
T 4h09_A 218 NLKKITITSG-VTTLG--DGAFYGMKALDEIAIPKN-VT-SIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKV 291 (379)
T ss_dssp SCSEEECCTT-CCEEC--TTTTTTCSSCCEEEECTT-CC-EECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEE
T ss_pred ccceeeeccc-eeEEc--cccccCCccceEEEcCCC-cc-EeCccccceeehhcccccccc-ceeccccccccccccccc
Confidence 4455555443 22122 344556677777777655 22 122345667788888888655 332334557788999999
Q ss_pred EeecCccCccchHHHhcCCCCcEEEccCC
Q 037844 92 AIIKCNFCSRITFLLRNLTQLIILHLSQN 120 (126)
Q Consensus 92 ~l~~n~~~~~~p~~l~~~~~L~~l~l~~n 120 (126)
.+..+.+...-...|.++.+|+.+++..+
T Consensus 292 ~l~~~~i~~I~~~aF~~c~~L~~i~lp~~ 320 (379)
T 4h09_A 292 VMDNSAIETLEPRVFMDCVKLSSVTLPTA 320 (379)
T ss_dssp EECCTTCCEECTTTTTTCTTCCEEECCTT
T ss_pred cccccccceehhhhhcCCCCCCEEEcCcc
Confidence 99888887555667888999999998654
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=44.31 E-value=34 Score=18.50 Aligned_cols=40 Identities=13% Similarity=-0.231 Sum_probs=20.3
Q ss_pred ccccccccCceeEeccCcccCcchhhhhhCCCCCCEEEcccC
Q 037844 31 SGLFKLIHLKWLILLFNKFSGFEILIKIINLSRLSYLNLFYS 72 (126)
Q Consensus 31 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~ 72 (126)
..|..+..|+.+.+-.+--. .-...|..|.+|+.+.+...
T Consensus 14 ~aF~~c~~L~~i~iP~~v~~--Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPNIGL--LYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CTTTTCTTCCCEEECTTSSC--CCTTSSTTCTTCCCEEECCS
T ss_pred HHhcCCCCCcEEEcCCchhe--EcHHHHhccCCccEEEEcCC
Confidence 44555566666655543221 22344555666666655443
Done!