Query 037845
Match_columns 314
No_of_seqs 126 out of 1373
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 04:55:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037845.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037845hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00281 actin; Provisional 100.0 4.4E-71 9.5E-76 503.5 27.6 312 2-313 1-312 (376)
2 PTZ00452 actin; Provisional 100.0 1.7E-70 3.6E-75 498.4 28.0 307 7-313 5-311 (375)
3 PTZ00466 actin-like protein; P 100.0 1.6E-69 3.6E-74 492.3 28.8 306 6-313 11-316 (380)
4 KOG0676 Actin and related prot 100.0 9E-70 1.9E-74 478.6 21.8 306 3-313 3-308 (372)
5 PTZ00004 actin-2; Provisional 100.0 2.2E-68 4.8E-73 486.4 28.6 312 2-313 1-314 (378)
6 KOG0677 Actin-related protein 100.0 3.8E-66 8.3E-71 422.6 20.6 308 5-312 2-311 (389)
7 KOG0679 Actin-related protein 100.0 4.1E-65 8.8E-70 437.1 22.4 308 1-313 5-359 (426)
8 PTZ00280 Actin-related protein 100.0 1.5E-63 3.3E-68 460.0 28.5 307 7-313 4-330 (414)
9 PF00022 Actin: Actin; InterP 100.0 1.2E-62 2.5E-67 453.4 23.7 304 4-313 1-328 (393)
10 smart00268 ACTIN Actin. ACTIN 100.0 1.7E-61 3.7E-66 442.3 28.2 305 8-313 2-309 (373)
11 cd00012 ACTIN Actin; An ubiqui 100.0 1.9E-60 4.2E-65 434.9 27.8 305 9-313 1-307 (371)
12 COG5277 Actin and related prot 100.0 4.6E-56 1E-60 405.5 25.4 310 4-313 3-380 (444)
13 KOG0680 Actin-related protein 100.0 4.4E-53 9.5E-58 355.0 20.1 298 6-313 2-335 (400)
14 KOG0678 Actin-related protein 100.0 2.4E-45 5.2E-50 308.9 14.5 305 7-312 4-331 (415)
15 KOG0681 Actin-related protein 100.0 6E-44 1.3E-48 318.0 18.9 214 7-225 23-243 (645)
16 PRK13930 rod shape-determining 100.0 2.8E-36 6.1E-41 272.1 16.1 278 9-313 10-298 (335)
17 PRK13927 rod shape-determining 100.0 1.1E-35 2.4E-40 268.0 17.1 277 8-313 6-294 (334)
18 PRK13929 rod-share determining 100.0 7.3E-34 1.6E-38 255.4 17.0 275 9-313 6-296 (335)
19 TIGR00904 mreB cell shape dete 100.0 7.7E-34 1.7E-38 255.7 16.3 281 10-313 5-297 (333)
20 KOG0797 Actin-related protein 100.0 4.4E-32 9.6E-37 240.7 17.2 159 66-224 178-354 (618)
21 PF06723 MreB_Mbl: MreB/Mbl pr 100.0 1E-30 2.2E-35 230.4 14.4 276 8-313 2-291 (326)
22 PRK13928 rod shape-determining 100.0 7.1E-30 1.5E-34 230.1 18.1 276 10-313 6-293 (336)
23 COG1077 MreB Actin-like ATPase 99.9 7.9E-26 1.7E-30 192.7 13.5 282 7-313 6-301 (342)
24 TIGR02529 EutJ ethanolamine ut 99.8 2.3E-17 5.1E-22 141.1 14.4 184 70-313 28-212 (239)
25 PRK15080 ethanolamine utilizat 99.7 3.3E-15 7.2E-20 130.0 17.5 167 6-218 23-192 (267)
26 CHL00094 dnaK heat shock prote 99.6 6.3E-14 1.4E-18 135.9 14.3 94 103-197 136-237 (621)
27 TIGR01991 HscA Fe-S protein as 99.5 5.4E-14 1.2E-18 135.7 13.0 178 9-198 1-232 (599)
28 PLN03184 chloroplast Hsp70; Pr 99.5 1.1E-13 2.5E-18 134.8 14.2 94 103-197 173-274 (673)
29 PTZ00400 DnaK-type molecular c 99.5 1E-13 2.3E-18 135.0 13.0 95 102-197 174-276 (663)
30 PTZ00186 heat shock 70 kDa pre 99.5 2.5E-13 5.5E-18 131.6 14.1 94 103-197 161-262 (657)
31 PRK01433 hscA chaperone protei 99.5 3.3E-13 7.1E-18 129.6 14.7 175 103-313 142-326 (595)
32 TIGR02350 prok_dnaK chaperone 99.5 1.2E-13 2.6E-18 133.7 11.5 94 103-197 131-233 (595)
33 PRK05183 hscA chaperone protei 99.5 3.2E-13 6.9E-18 130.7 13.3 95 103-198 150-252 (616)
34 PRK00290 dnaK molecular chaper 99.5 2E-13 4.3E-18 132.8 11.8 94 103-197 134-235 (627)
35 PRK13411 molecular chaperone D 99.5 4.5E-13 9.8E-18 130.4 13.8 94 103-197 134-236 (653)
36 PRK13410 molecular chaperone D 99.5 2.4E-13 5.3E-18 132.2 11.7 94 103-197 136-237 (668)
37 PTZ00009 heat shock 70 kDa pro 99.4 9.5E-13 2.1E-17 128.3 13.5 94 103-197 141-244 (653)
38 PRK11678 putative chaperone; P 99.4 2.8E-12 6.1E-17 119.2 13.6 180 9-192 2-260 (450)
39 TIGR01174 ftsA cell division p 99.3 2E-11 4.2E-16 111.8 14.5 97 114-222 156-257 (371)
40 COG0849 ftsA Cell division ATP 99.3 1.3E-11 2.9E-16 112.2 10.2 154 124-314 172-339 (418)
41 PF00012 HSP70: Hsp70 protein; 99.2 1.1E-10 2.4E-15 113.7 11.1 94 103-197 136-238 (602)
42 PRK09472 ftsA cell division pr 99.2 2.7E-11 5.9E-16 112.4 5.1 170 114-313 164-346 (420)
43 COG0443 DnaK Molecular chapero 99.2 3.5E-10 7.7E-15 108.3 12.8 187 7-197 5-222 (579)
44 PRK13917 plasmid segregation p 99.0 1.9E-08 4.2E-13 90.8 15.8 187 7-198 2-233 (344)
45 TIGR01175 pilM type IV pilus a 99.0 4.9E-08 1.1E-12 88.7 17.8 94 114-219 141-246 (348)
46 TIGR03739 PRTRC_D PRTRC system 98.9 1.2E-08 2.6E-13 91.4 11.7 183 12-198 2-215 (320)
47 KOG0100 Molecular chaperones G 98.8 5.4E-07 1.2E-11 79.9 16.3 93 103-196 173-274 (663)
48 PF11104 PilM_2: Type IV pilus 98.7 1.9E-07 4.2E-12 84.4 13.4 179 80-313 86-292 (340)
49 KOG0101 Molecular chaperones H 98.5 2.9E-06 6.3E-11 80.3 15.1 94 103-197 144-247 (620)
50 COG4972 PilM Tfp pilus assembl 98.4 2.3E-05 5E-10 68.2 14.9 57 152-219 195-251 (354)
51 KOG0104 Molecular chaperones G 98.3 1.2E-05 2.5E-10 76.7 13.3 94 103-197 159-275 (902)
52 PF06406 StbA: StbA protein; 98.2 6.5E-06 1.4E-10 73.7 8.6 72 128-199 137-214 (318)
53 PRK10719 eutA reactivating fac 98.0 3.8E-05 8.2E-10 70.6 9.4 164 1-190 1-184 (475)
54 COG4820 EutJ Ethanolamine util 97.9 2.4E-06 5.1E-11 69.0 0.7 63 126-190 116-178 (277)
55 KOG0103 Molecular chaperones H 97.8 0.00064 1.4E-08 64.7 13.9 96 101-197 136-246 (727)
56 KOG0102 Molecular chaperones m 97.7 0.00081 1.8E-08 62.3 12.8 94 103-197 161-262 (640)
57 TIGR00241 CoA_E_activ CoA-subs 97.2 0.0093 2E-07 51.5 12.5 53 143-196 85-138 (248)
58 PF06277 EutA: Ethanolamine ut 97.1 0.0046 1E-07 57.2 10.2 172 7-201 3-203 (473)
59 PRK11031 guanosine pentaphosph 96.2 0.049 1.1E-06 51.9 11.0 84 105-191 80-171 (496)
60 TIGR03706 exo_poly_only exopol 96.1 0.043 9.2E-07 48.8 9.1 85 105-192 74-165 (300)
61 COG0248 GppA Exopolyphosphatas 95.2 0.048 1E-06 51.5 6.3 78 109-189 81-166 (492)
62 PRK10854 exopolyphosphatase; P 95.0 0.12 2.6E-06 49.5 8.7 82 105-189 85-174 (513)
63 COG4819 EutA Ethanolamine util 94.5 0.24 5.2E-06 43.7 8.3 155 4-186 2-179 (473)
64 PF14450 FtsA: Cell division p 93.6 0.36 7.8E-06 36.5 7.0 58 153-221 2-70 (120)
65 TIGR03192 benz_CoA_bzdQ benzoy 93.1 0.69 1.5E-05 40.6 8.7 26 149-174 124-150 (293)
66 PF01968 Hydantoinase_A: Hydan 92.4 0.15 3.3E-06 45.0 3.8 34 141-174 67-101 (290)
67 TIGR03286 methan_mark_15 putat 92.3 0.63 1.4E-05 42.7 7.7 25 150-174 241-265 (404)
68 PRK13321 pantothenate kinase; 91.6 2.5 5.4E-05 36.6 10.4 18 10-27 3-20 (256)
69 TIGR00671 baf pantothenate kin 91.0 2.8 6.1E-05 36.0 10.0 18 10-27 2-19 (243)
70 PRK13324 pantothenate kinase; 90.7 5.2 0.00011 34.7 11.4 18 9-26 2-19 (258)
71 PF03309 Pan_kinase: Type III 89.7 3.9 8.5E-05 34.1 9.7 18 10-27 2-19 (206)
72 COG1521 Pantothenate kinase ty 89.4 4.6 0.0001 34.7 9.9 18 9-26 2-19 (251)
73 PF02541 Ppx-GppA: Ppx/GppA ph 88.3 0.88 1.9E-05 40.0 5.0 84 106-192 61-152 (285)
74 PRK13318 pantothenate kinase; 87.2 13 0.00028 32.2 11.5 18 9-26 2-19 (258)
75 COG1548 Predicted transcriptio 87.0 0.49 1.1E-05 40.4 2.4 23 149-171 129-151 (330)
76 PRK13326 pantothenate kinase; 86.8 11 0.00024 32.8 10.8 20 8-27 7-26 (262)
77 TIGR02261 benz_CoA_red_D benzo 86.5 4.8 0.0001 34.9 8.3 34 141-174 88-122 (262)
78 TIGR03123 one_C_unchar_1 proba 85.7 0.9 2E-05 40.5 3.5 29 147-175 125-153 (318)
79 PF08841 DDR: Diol dehydratase 83.4 6.7 0.00014 34.2 7.6 94 114-217 93-191 (332)
80 PF08735 DUF1786: Putative pyr 82.0 10 0.00022 32.6 8.2 56 117-173 128-190 (254)
81 TIGR00744 ROK_glcA_fam ROK fam 73.1 32 0.0007 30.5 9.4 52 121-174 89-147 (318)
82 PRK13320 pantothenate kinase; 64.9 90 0.002 26.8 11.2 18 9-26 4-21 (244)
83 COG0145 HyuA N-methylhydantoin 63.7 7.6 0.00016 38.5 3.5 33 142-174 268-302 (674)
84 smart00842 FtsA Cell division 62.0 17 0.00038 29.5 5.0 22 72-93 36-57 (187)
85 PRK00292 glk glucokinase; Prov 60.3 73 0.0016 28.3 9.0 47 123-170 84-147 (316)
86 KOG1386 Nucleoside phosphatase 59.0 1.5E+02 0.0032 28.2 10.7 88 82-169 65-181 (501)
87 PRK09557 fructokinase; Reviewe 58.0 1.1E+02 0.0024 26.9 9.7 52 121-174 88-146 (301)
88 PRK05082 N-acetylmannosamine k 56.8 1.3E+02 0.0028 26.2 10.0 47 126-174 93-145 (291)
89 PRK14101 bifunctional glucokin 55.3 62 0.0014 32.1 8.4 24 123-146 99-122 (638)
90 PRK12408 glucokinase; Provisio 53.9 1.2E+02 0.0026 27.3 9.4 48 123-171 102-166 (336)
91 PRK13322 pantothenate kinase; 51.8 1.5E+02 0.0034 25.3 10.9 18 9-26 2-19 (246)
92 COG1924 Activator of 2-hydroxy 50.2 2.1E+02 0.0045 26.4 10.4 118 6-172 134-251 (396)
93 TIGR03367 queuosine_QueD queuo 49.6 25 0.00055 25.0 3.5 50 74-130 42-91 (92)
94 PF07318 DUF1464: Protein of u 49.1 28 0.00061 31.4 4.3 34 147-180 151-184 (343)
95 TIGR01319 glmL_fam conserved h 49.0 27 0.00058 32.9 4.3 72 102-173 174-272 (463)
96 COG4012 Uncharacterized protei 48.6 97 0.0021 27.0 7.2 45 149-195 226-273 (342)
97 cd08627 PI-PLCc_gamma1 Catalyt 47.9 45 0.00098 28.3 5.1 43 83-131 75-117 (229)
98 cd08626 PI-PLCc_beta4 Catalyti 46.1 47 0.001 28.7 5.1 45 82-132 76-120 (257)
99 PRK13331 pantothenate kinase; 45.4 24 0.00052 30.5 3.2 27 1-27 1-27 (251)
100 cd08630 PI-PLCc_delta3 Catalyt 45.1 50 0.0011 28.6 5.1 44 82-131 74-117 (258)
101 cd08596 PI-PLCc_epsilon Cataly 44.8 50 0.0011 28.5 5.0 43 83-131 75-117 (254)
102 cd08594 PI-PLCc_eta Catalytic 43.2 56 0.0012 27.7 5.0 44 82-131 74-117 (227)
103 cd08598 PI-PLC1c_yeast Catalyt 43.2 54 0.0012 27.9 4.9 44 82-131 74-117 (231)
104 cd08631 PI-PLCc_delta4 Catalyt 43.2 53 0.0011 28.4 5.0 43 83-131 75-117 (258)
105 smart00732 YqgFc Likely ribonu 43.2 28 0.0006 24.7 2.9 19 8-26 2-20 (99)
106 cd08629 PI-PLCc_delta1 Catalyt 43.0 54 0.0012 28.4 5.0 44 82-131 74-117 (258)
107 cd08558 PI-PLCc_eukaryota Cata 42.3 58 0.0013 27.6 5.0 45 82-132 74-118 (226)
108 cd08593 PI-PLCc_delta Catalyti 42.2 55 0.0012 28.3 5.0 44 82-131 74-117 (257)
109 cd08592 PI-PLCc_gamma Catalyti 41.7 60 0.0013 27.6 5.0 43 83-131 75-117 (229)
110 cd08591 PI-PLCc_beta Catalytic 41.5 59 0.0013 28.1 5.0 44 83-132 77-120 (257)
111 cd08595 PI-PLCc_zeta Catalytic 41.4 59 0.0013 28.1 5.0 44 82-131 74-117 (257)
112 PRK13333 pantothenate kinase; 41.2 33 0.00073 28.6 3.4 27 141-170 77-103 (206)
113 cd08632 PI-PLCc_eta1 Catalytic 41.2 63 0.0014 27.8 5.1 43 83-131 75-117 (253)
114 cd08633 PI-PLCc_eta2 Catalytic 40.4 65 0.0014 27.8 5.0 44 82-131 74-117 (254)
115 KOG1385 Nucleoside phosphatase 40.4 2.1E+02 0.0046 26.7 8.4 83 83-165 122-228 (453)
116 PF01869 BcrAD_BadFG: BadF/Bad 40.4 1.6E+02 0.0034 25.4 7.7 41 133-174 89-130 (271)
117 PRK13317 pantothenate kinase; 38.9 1.7E+02 0.0037 25.7 7.6 38 148-188 94-131 (277)
118 cd08597 PI-PLCc_PRIP_metazoa C 38.4 68 0.0015 27.8 4.9 44 82-131 74-117 (260)
119 KOG1794 N-Acetylglucosamine ki 37.7 2.9E+02 0.0064 24.5 8.6 90 83-173 48-143 (336)
120 COG2441 Predicted butyrate kin 37.4 51 0.0011 28.9 3.9 48 149-196 162-213 (374)
121 smart00732 YqgFc Likely ribonu 36.5 1E+02 0.0022 21.6 5.0 46 152-197 3-49 (99)
122 PF02685 Glucokinase: Glucokin 36.1 37 0.00079 30.4 3.1 44 127-170 88-150 (316)
123 cd08628 PI-PLCc_gamma2 Catalyt 35.9 83 0.0018 27.2 5.0 43 83-131 75-117 (254)
124 PRK00976 hypothetical protein; 35.8 57 0.0012 29.3 4.2 32 142-174 141-172 (326)
125 PRK09472 ftsA cell division pr 33.2 97 0.0021 28.9 5.5 22 72-93 45-66 (420)
126 cd08624 PI-PLCc_beta2 Catalyti 33.1 93 0.002 27.0 4.9 44 82-131 76-120 (261)
127 cd08599 PI-PLCc_plant Catalyti 32.2 1.1E+02 0.0024 25.9 5.2 43 83-131 75-117 (228)
128 cd08623 PI-PLCc_beta1 Catalyti 32.2 1E+02 0.0022 26.7 5.0 45 82-132 76-121 (258)
129 TIGR03286 methan_mark_15 putat 31.3 90 0.0019 29.0 4.8 49 151-199 145-193 (404)
130 cd08625 PI-PLCc_beta3 Catalyti 30.3 1E+02 0.0022 26.8 4.7 43 83-131 77-120 (258)
131 PF13941 MutL: MutL protein 28.8 59 0.0013 30.8 3.3 64 111-174 193-272 (457)
132 PRK03011 butyrate kinase; Prov 26.0 47 0.001 30.3 2.1 27 149-176 175-201 (358)
133 PRK13329 pantothenate kinase; 25.9 57 0.0012 28.1 2.5 17 9-25 3-19 (249)
134 PF13941 MutL: MutL protein 25.5 50 0.0011 31.2 2.2 23 9-31 2-26 (457)
135 PF00370 FGGY_N: FGGY family o 25.1 57 0.0012 27.7 2.3 19 9-27 2-20 (245)
136 KOG1138 Predicted cleavage and 24.3 2.4E+02 0.0051 27.1 6.1 88 71-165 299-404 (653)
137 PLN02952 phosphoinositide phos 23.5 1.6E+02 0.0034 29.1 5.1 44 82-131 196-239 (599)
138 PLN02230 phosphoinositide phos 23.1 1.6E+02 0.0034 29.0 5.0 44 82-131 187-230 (598)
139 PF14606 Lipase_GDSL_3: GDSL-l 22.5 1.2E+02 0.0026 24.7 3.5 60 82-142 74-147 (178)
140 PLN02222 phosphoinositide phos 22.4 1.6E+02 0.0034 28.9 4.9 43 83-131 177-219 (581)
141 PLN02228 Phosphoinositide phos 21.9 1.7E+02 0.0038 28.5 5.1 43 83-131 180-222 (567)
142 PTZ00288 glucokinase 1; Provis 21.8 1.6E+02 0.0034 27.5 4.6 19 129-147 128-146 (405)
143 TIGR00039 6PTHBS 6-pyruvoyl te 21.7 1.2E+02 0.0026 22.8 3.3 52 74-130 44-95 (124)
144 COG4566 TtrR Response regulato 20.8 3.4E+02 0.0074 22.4 5.8 45 114-159 13-58 (202)
145 PLN02223 phosphoinositide phos 20.7 1.9E+02 0.0041 28.0 4.9 45 82-131 179-223 (537)
146 TIGR02259 benz_CoA_red_A benzo 20.6 86 0.0019 29.1 2.6 26 148-173 265-291 (432)
No 1
>PTZ00281 actin; Provisional
Probab=100.00 E-value=4.4e-71 Score=503.54 Aligned_cols=312 Identities=89% Similarity=1.378 Sum_probs=290.2
Q ss_pred CCCCCCCcEEEeCCCccEEEEEeCCCCCCccCCceeeecCCCCccccCCCcccccccccccccCCceeeCcccCCccCCH
Q 037845 2 ADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNW 81 (314)
Q Consensus 2 ~~~~~~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~~~ 81 (314)
|++|+.++||||+||+++|+|||||+.|++++||+++++++...+.+.++...++|+++...+..+.+++|+++|.|.||
T Consensus 1 ~~~~~~~~vViD~Gs~~~k~G~age~~P~~i~ps~vg~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~Pi~~G~i~dw 80 (376)
T PTZ00281 1 MDGEDVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNW 80 (376)
T ss_pred CCCCcCCeEEEECCCCeEEEeeCCCCCCCeeccccceeecCcccccCcccCCeEECchhhccccCcEEeccCcCCEEcCH
Confidence 67899999999999999999999999999999999999877544444445677899998877788899999999999999
Q ss_pred HHHHHHHHHhcccccccCCCCCceEEeeCCCCChHHHHHHHHHHhhhCCCCeeeechhhhHhhhhcCCCeEEEEecCCCc
Q 037845 82 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGV 161 (314)
Q Consensus 82 ~~le~~l~~~~~~~l~~~~~~~~vll~~~~~~~~~~~~~~~~~lfe~~~~~~v~~~~~~~~a~~~~g~~t~lVVDiG~~~ 161 (314)
|.++.+|+++|.+.|+++|+++|+++++|+++++..|++++|++||+|++|++++.+++++++|++|++||||||+|++.
T Consensus 81 d~~e~l~~~~f~~~l~v~p~~~pvllte~~~~~~~~re~l~e~lFE~~~vp~~~~~~~~~ls~ya~g~~tglVVDiG~~~ 160 (376)
T PTZ00281 81 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGV 160 (376)
T ss_pred HHHHHHHHHHHHhhccCCCccCeEEEecCCCCcHHHHHHHHHHHhcccCCceeEeeccHHHHHHhcCCceEEEEECCCce
Confidence 99999999999889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeeCCeeccccceEecchHHHHHHHHHHHHHhcCCccccccHHHHHHHHHhhccccccCHHHHHHhhcCCCCCcce
Q 037845 162 SHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKN 241 (314)
Q Consensus 162 t~i~pV~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (314)
|+|+||+||+++.++.+++++||++++++|.++|..++.++....+.+.++++|+++||++.+++.+.+...........
T Consensus 161 t~v~PV~dG~~~~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~ 240 (376)
T PTZ00281 161 SHTVPIYEGYALPHAILRLDLAGRDLTDYMMKILTERGYSFTTTAEREIVRDIKEKLAYVALDFEAEMQTAASSSALEKS 240 (376)
T ss_pred EEEEEEEecccchhheeeccCcHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcEEecCCchHHHHhhhcCccccee
Confidence 99999999999999999999999999999999999888777666778899999999999999988777655444455678
Q ss_pred EECCCCCeEeeCCeeeecccccCCCCcCCCCCCCHHHHHHHHHHhCChhHHHhhhcCeEEecCCCCCCCCCC
Q 037845 242 YELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPVLPT 313 (314)
Q Consensus 242 ~~lp~~~~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~nIvl~GG~s~i~G~~e 313 (314)
|++|||+.+.++.+|+.+||+||+|+..+.+..+|+++|.++|.+||+|.|+.|++||+|+||+|++|||.+
T Consensus 241 y~LPdg~~i~i~~er~~~~E~LF~P~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~ 312 (376)
T PTZ00281 241 YELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIAD 312 (376)
T ss_pred EECCCCCEEEeeHHHeeCcccccChhhcCCCCCCHHHHHHHHHHhCChhHHHHHHhhccccCccccCcCHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999975
No 2
>PTZ00452 actin; Provisional
Probab=100.00 E-value=1.7e-70 Score=498.44 Aligned_cols=307 Identities=54% Similarity=0.975 Sum_probs=283.0
Q ss_pred CCcEEEeCCCccEEEEEeCCCCCCccCCceeeecCCCCccccCCCcccccccccccccCCceeeCcccCCccCCHHHHHH
Q 037845 7 IQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEK 86 (314)
Q Consensus 7 ~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~~~~~le~ 86 (314)
.++||||+||+++|+|||||+.|++++||++++++......+....++++|+++...+..+.+++|+++|.|.|||.+|.
T Consensus 5 ~~~vViD~Gs~~~k~G~age~~P~~i~ps~vg~~~~~~~~~~~~~~~~~iG~~~~~~~~~~~l~~Pi~~G~I~dwd~~e~ 84 (375)
T PTZ00452 5 YPAVVIDNGSGYCKIGIAGDDAPTSCFPAIVGRSKQNDGIFSTFNKEYYVGEEAQAKRGVLAIKEPIQNGIINSWDDIEI 84 (375)
T ss_pred CCEEEEECCCCeEEEeeCCCCCcCEEecceeEEECCccccccccccceEEChhhhccccCcEEcccCcCCEEcCHHHHHH
Confidence 46899999999999999999999999999999987643222222456789999988888889999999999999999999
Q ss_pred HHHHhcccccccCCCCCceEEeeCCCCChHHHHHHHHHHhhhCCCCeeeechhhhHhhhhcCCCeEEEEecCCCceEEEE
Q 037845 87 IWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP 166 (314)
Q Consensus 87 ~l~~~~~~~l~~~~~~~~vll~~~~~~~~~~~~~~~~~lfe~~~~~~v~~~~~~~~a~~~~g~~t~lVVDiG~~~t~i~p 166 (314)
+|+|+|++.|+++|+++|+++++++++++..|++++|++||+|++|++++.+++++++|++|++||||||+|++.|+|+|
T Consensus 85 iw~~~f~~~l~v~p~~~pvlitE~~~~~~~~Re~l~eilFE~~~vp~~~~~~~~~lslya~g~~tglVVDiG~~~t~v~P 164 (375)
T PTZ00452 85 IWHHAFYNELCMSPEDQPVFMTDAPMNSKFNRERMTQIMFETFNTPCLYISNEAVLSLYTSGKTIGLVVDSGEGVTHCVP 164 (375)
T ss_pred HHHHHHHhhcCCCcccCceeeecCCCCCHHHHHHHHHHHhhccCCceEEEechHHHHHHHCCCceeeeecCCCCcceEEE
Confidence 99999998999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCeeccccceEecchHHHHHHHHHHHHHhcCCccccccHHHHHHHHHhhccccccCHHHHHHhhcCCCCCcceEECCC
Q 037845 167 IYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPD 246 (314)
Q Consensus 167 V~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~ 246 (314)
|+||++++++..+.++||++++++|.++|.+++..+....+.+.++++|+++||++.+++++.............|++||
T Consensus 165 V~dG~~l~~~~~r~~~gG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~y~LPD 244 (375)
T PTZ00452 165 VFEGHQIPQAITKINLAGRLCTDYLTQILQELGYSLTEPHQRIIVKNIKERLCYTALDPQDEKRIYKESNSQDSPYKLPD 244 (375)
T ss_pred EECCEEeccceEEeeccchHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccccCcHHHHHHHhhccCCcCceEECCC
Confidence 99999999999999999999999999999988877766667889999999999999998877765443344567899999
Q ss_pred CCeEeeCCeeeecccccCCCCcCCCCCCCHHHHHHHHHHhCChhHHHhhhcCeEEecCCCCCCCCCC
Q 037845 247 GQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPVLPT 313 (314)
Q Consensus 247 ~~~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~nIvl~GG~s~i~G~~e 313 (314)
|+.+.++.+|+.+||+||+|+..+.+..+|+++|.++|.+||+|.|+.|++||+|+||+|++|||.|
T Consensus 245 g~~i~l~~er~~~~E~LF~P~~~g~~~~gi~~~i~~si~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~ 311 (375)
T PTZ00452 245 GNILTIKSQKFRCSEILFQPKLIGLEVAGIHHLAYSSIKKCDLDLRQELCRNIVLSGGTTLFPGIAN 311 (375)
T ss_pred CCEEEeehHHhcCcccccChhhcCCCCCChhHHHHHHHHhCCHhHHHHhhccEEEecccccccCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999975
No 3
>PTZ00466 actin-like protein; Provisional
Probab=100.00 E-value=1.6e-69 Score=492.32 Aligned_cols=306 Identities=51% Similarity=0.945 Sum_probs=281.5
Q ss_pred CCCcEEEeCCCccEEEEEeCCCCCCccCCceeeecCCCCccccCCCcccccccccccccCCceeeCcccCCccCCHHHHH
Q 037845 6 DIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDME 85 (314)
Q Consensus 6 ~~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~~~~~le 85 (314)
+..+||||+||+++|+||||++.|++++||++++++....+.+.....+++|+++...++...+++|+++|.|.|||.+|
T Consensus 11 ~~~~iViD~GS~~~K~G~ag~~~P~~~~ps~vg~~k~~~~~~~~~~~~~~vG~~~~~~~~~~~l~~Pi~~G~v~dwd~~e 90 (380)
T PTZ00466 11 SNQPIIIDNGTGYIKAGFAGEDVPNLVFPSYVGRPKYKRVMAGAVEGNIFVGNKAEEYRGLLKVTYPINHGIIENWNDME 90 (380)
T ss_pred cCCeEEEECCCCcEEEeeCCCCCCCEeccceeeeecCccccccCCCCCeEECchhhhhCcCceeCccccCCeECCHHHHH
Confidence 35689999999999999999999999999999998765433333445788999998777788899999999999999999
Q ss_pred HHHHHhcccccccCCCCCceEEeeCCCCChHHHHHHHHHHhhhCCCCeeeechhhhHhhhhcCCCeEEEEecCCCceEEE
Q 037845 86 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTV 165 (314)
Q Consensus 86 ~~l~~~~~~~l~~~~~~~~vll~~~~~~~~~~~~~~~~~lfe~~~~~~v~~~~~~~~a~~~~g~~t~lVVDiG~~~t~i~ 165 (314)
.+|+++| +.|+++++++|+++++++++++..|++++|++||.|++|++++.+++++|+|++|++||+|||+|++.|+|+
T Consensus 91 ~iw~~~f-~~l~v~~~~~pvllte~~~~~~~~re~~~e~lFE~~~~p~~~~~~~~~lsl~a~g~~tglVVD~G~~~t~v~ 169 (380)
T PTZ00466 91 NIWIHVY-NSMKINSEEHPVLLTEAPLNPQKNKEKIAEVFFETFNVPALFISIQAILSLYSCGKTNGTVLDCGDGVCHCV 169 (380)
T ss_pred HHHHHHH-hhcccCCccCeEEEecCccccHHHHHHHHHHHhccCCCCeEEEecchHHHHHhcCCceEEEEeCCCCceEEE
Confidence 9999998 789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCeeccccceEecchHHHHHHHHHHHHHhcCCccccccHHHHHHHHHhhccccccCHHHHHHhhcCCCCCcceEECC
Q 037845 166 PIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELP 245 (314)
Q Consensus 166 pV~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp 245 (314)
||+||+++.++..++++||++++++|.++|.+++..+....+.+.++++|+++||++.|+.++..... .......|++|
T Consensus 170 PV~~G~~~~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~v~~iKe~~c~v~~d~~~e~~~~~-~~~~~~~y~LP 248 (380)
T PTZ00466 170 SIYEGYSITNTITRTDVAGRDITTYLGYLLRKNGHLFNTSAEMEVVKNMKENCCYVSFNMNKEKNSSE-KALTTLPYILP 248 (380)
T ss_pred EEECCEEeecceeEecCchhHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhCeEecCChHHHHhhcc-ccccceeEECC
Confidence 99999999999999999999999999999998887776677889999999999999999877665432 22235789999
Q ss_pred CCCeEeeCCeeeecccccCCCCcCCCCCCCHHHHHHHHHHhCChhHHHhhhcCeEEecCCCCCCCCCC
Q 037845 246 DGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPVLPT 313 (314)
Q Consensus 246 ~~~~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~nIvl~GG~s~i~G~~e 313 (314)
||+.+.++.+||.+||+||+|+..+.+..+|+++|.++|.+||+|.|+.|++||+|+||+|++|||.|
T Consensus 249 dg~~i~l~~er~~~~E~LF~P~~~g~~~~gl~~~i~~sI~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~ 316 (380)
T PTZ00466 249 DGSQILIGSERYRAPEVLFNPSILGLEYLGLSELIVTSITRADMDLRRTLYSHIVLSGGTTMFHGFGD 316 (380)
T ss_pred CCcEEEEchHHhcCcccccCccccCCCCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCccccCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999975
No 4
>KOG0676 consensus Actin and related proteins [Cytoskeleton]
Probab=100.00 E-value=9e-70 Score=478.56 Aligned_cols=306 Identities=81% Similarity=1.285 Sum_probs=289.4
Q ss_pred CCCCCCcEEEeCCCccEEEEEeCCCCCCccCCceeeecCCCCccccCCCcccccccccccccCCceeeCcccCCccCCHH
Q 037845 3 DAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWD 82 (314)
Q Consensus 3 ~~~~~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~~~~ 82 (314)
...+.++||||+||..+|+|||||+.|+.++||+++++++...+.++.+++.++|+++...+ .+++|+++|.|.|||
T Consensus 3 ~~~~~~~vViDnGsg~~KaGfag~~~P~~v~ps~vg~~~~~~~~~~~~~~~~~vg~~a~~~~---~l~~Pie~Giv~~wd 79 (372)
T KOG0676|consen 3 EADDIQAVVIDNGSGFVKAGFAGDDAPRAVFPSIVGRPRHQGVMAGMTQKDTYVGDEAESKR---TLKYPIERGIVTDWD 79 (372)
T ss_pred CcCCcceEEEECCCceeecccCCCCCCceecceeccccccccccccccccccccchhhhccc---cccCccccccccchH
Confidence 34667999999999999999999999999999999999998888888999999999998877 789999999999999
Q ss_pred HHHHHHHHhcccccccCCCCCceEEeeCCCCChHHHHHHHHHHhhhCCCCeeeechhhhHhhhhcCCCeEEEEecCCCce
Q 037845 83 DMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVS 162 (314)
Q Consensus 83 ~le~~l~~~~~~~l~~~~~~~~vll~~~~~~~~~~~~~~~~~lfe~~~~~~v~~~~~~~~a~~~~g~~t~lVVDiG~~~t 162 (314)
+++.+|.++|++.|.++|+++|+++++++++|+..||++++++||.|++|++++..++++ |++|.+||||||+|++.|
T Consensus 80 ~me~iw~~if~~~L~~~Pee~pvllte~pl~p~~nREk~tqi~FE~fnvpa~yva~qavl--ya~g~ttG~VvD~G~gvt 157 (372)
T KOG0676|consen 80 DMEKIWHHLFYSELLVAPEEHPVLLTEPPLNPKANREKLTQIMFETFNVPALYVAIQAVL--YASGRTTGLVVDSGDGVT 157 (372)
T ss_pred HHHHHHHHHHHHhhccCcccCceEeecCCCCchHhHHHHHHHhhhhcCccHhHHHHHHHH--HHcCCeeEEEEEcCCCce
Confidence 999999999999999999999999999999999999999999999999999999665555 999999999999999999
Q ss_pred EEEEeeCCeeccccceEecchHHHHHHHHHHHHHhcCCccccccHHHHHHHHHhhccccccCHHHHHHhhcCCCCCcceE
Q 037845 163 HTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNY 242 (314)
Q Consensus 163 ~i~pV~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (314)
+++||++|+++++++.++++||++++++|+..|.++++++....+.++++++|+++||++.+++++....+........|
T Consensus 158 ~~vPI~eG~~lp~ai~~ldl~G~dlt~~l~~~L~~~g~s~~~~~~~eIv~diKeklCyvald~~~e~~~~~~~~~l~~~y 237 (372)
T KOG0676|consen 158 HVVPIYEGYALPHAILRLDLAGRDLTDYLLKQLRKRGYSFTTSAEFEIVRDIKEKLCYVALDFEEEEETANTSSSLESSY 237 (372)
T ss_pred eeeecccccccchhhheecccchhhHHHHHHHHHhcccccccccHHHHHHHhHhhhcccccccchhhhcccccccccccc
Confidence 99999999999999999999999999999999999888888888999999999999999999998887755555667779
Q ss_pred ECCCCCeEeeCCeeeecccccCCCCcCCCCCCCHHHHHHHHHHhCChhHHHhhhcCeEEecCCCCCCCCCC
Q 037845 243 ELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPVLPT 313 (314)
Q Consensus 243 ~lp~~~~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~nIvl~GG~s~i~G~~e 313 (314)
++|||+.+.++++|+.+||+||+|+..+.+..+|++++.++|.+||+|+|++|+.||+|+||++++|||.+
T Consensus 238 ~lPDg~~i~i~~erf~~pE~lFqP~~~g~e~~gi~~~~~~sI~kcd~dlrk~L~~nivLsGGtT~~pGl~~ 308 (372)
T KOG0676|consen 238 ELPDGQKITIGNERFRCPEVLFQPSLLGMESPGIHELTVNSIMKCDIDLRKDLYENIVLSGGTTMFPGLAD 308 (372)
T ss_pred cCCCCCEEecCCcccccchhcCChhhcCCCCCchhHHHHHHHHhCChhHhHHHHhheEEeCCcccchhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999965
No 5
>PTZ00004 actin-2; Provisional
Probab=100.00 E-value=2.2e-68 Score=486.42 Aligned_cols=312 Identities=79% Similarity=1.271 Sum_probs=285.7
Q ss_pred CCCCCCCcEEEeCCCccEEEEEeCCCCCCccCCceeeecCCCCccccCCCcccccccccccccCCceeeCcccCCccCCH
Q 037845 2 ADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNW 81 (314)
Q Consensus 2 ~~~~~~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~~~ 81 (314)
|.-++.++||||+||+++|+||||++.|++++||++++++++..+.+..++..++|+++...+....+++|+++|.|.||
T Consensus 1 ~~~~~~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~Pi~~G~i~d~ 80 (378)
T PTZ00004 1 MSVEETNAAVVDNGSGMVKAGFAGDDAPRCVFPSIVGRPKNPGIMVGMEEKDCYVGDEAQDKRGILTLKYPIEHGIVTNW 80 (378)
T ss_pred CCCCCCCeEEEECCCCeEEEeeCCCCCCCEEccceeEEecccccccCcCCCceEECchhhcccccceEcccCcCCEEcCH
Confidence 34577889999999999999999999999999999999887544444445678899998777777889999999999999
Q ss_pred HHHHHHHHHhcccccccCCCCCceEEeeCCCCChHHHHHHHHHHhhhCCCCeeeechhhhHhhhhcCCCeEEEEecCCCc
Q 037845 82 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGV 161 (314)
Q Consensus 82 ~~le~~l~~~~~~~l~~~~~~~~vll~~~~~~~~~~~~~~~~~lfe~~~~~~v~~~~~~~~a~~~~g~~t~lVVDiG~~~ 161 (314)
|.++.+|+++|.+.|++++.++|+++++++++++..|+++++++||.|++|++++.+++++|+|++|++||||||+|++.
T Consensus 81 d~~e~i~~~~~~~~l~v~~~~~pvllte~~~~~~~~r~~~~e~lFE~~~~~~~~~~~~~~ls~ya~g~~tglVVDiG~~~ 160 (378)
T PTZ00004 81 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETHNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGV 160 (378)
T ss_pred HHHHHHHHHHHHhhcccCCccCcceeecCCCCcHHHHHHHHHHHHhhcCCceEEeeccHHHHHHhcCCceEEEEECCCCc
Confidence 99999999999888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeeCCeeccccceEecchHHHHHHHHHHHHHhcCCccccccHHHHHHHHHhhccccccCHHHHHHhhcCCCC-Ccc
Q 037845 162 SHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSS-VEK 240 (314)
Q Consensus 162 t~i~pV~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~-~~~ 240 (314)
|+|+||+||+++.++.+++++||++++++|.++|.+++..+....+.+.++++|+++|+++.|++++......... ...
T Consensus 161 t~v~pV~dG~~l~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~ 240 (378)
T PTZ00004 161 SHTVPIYEGYSLPHAIHRLDVAGRDLTEYMMKILHERGTTFTTTAEKEIVRDIKEKLCYIALDFDEEMGNSAGSSDKYEE 240 (378)
T ss_pred EEEEEEECCEEeecceeeecccHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHhhcceeecCCHHHHHhhhhcCccccce
Confidence 9999999999999999999999999999999999998877766667889999999999999999887764432222 367
Q ss_pred eEECCCCCeEeeCCeeeecccccCCCCcCCCC-CCCHHHHHHHHHHhCChhHHHhhhcCeEEecCCCCCCCCCC
Q 037845 241 NYELPDGQIITIGAERFRCPEVLFQPSLIGME-AAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPVLPT 313 (314)
Q Consensus 241 ~~~lp~~~~i~i~~~~~~~~E~lF~p~~~~~~-~~~l~~~i~~~i~~~~~d~r~~l~~nIvl~GG~s~i~G~~e 313 (314)
.|++|||+.+.++.+|+.+||+||+|+..+.+ ..+|+++|.++|.+||+|+|+.|++||+|+||+|++|||.+
T Consensus 241 ~y~lPdg~~i~l~~er~~~~E~LF~P~~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~ 314 (378)
T PTZ00004 241 SYELPDGTIITVGSERFRCPEALFQPSLIGKEEPPGIHELTFQSINKCDIDIRKDLYGNIVLSGGTTMYRGLPE 314 (378)
T ss_pred EEECCCCCEEEEcHHHeeCcccccChhhcCccccCChHHHHHHHHHhCChhHHHHHHhhEEeccchhcCcCHHH
Confidence 89999999999999999999999999998877 89999999999999999999999999999999999999975
No 6
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton]
Probab=100.00 E-value=3.8e-66 Score=422.63 Aligned_cols=308 Identities=53% Similarity=0.939 Sum_probs=291.2
Q ss_pred CCCCcEEEeCCCccEEEEEeCCCCCCccCCceeeecCCCCcccc--CCCcccccccccccccCCceeeCcccCCccCCHH
Q 037845 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVG--MGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWD 82 (314)
Q Consensus 5 ~~~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~~~~~~~~~~~~~--~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~~~~ 82 (314)
|+.++||.|.|+.++|+||||+..|.+++|+.+++|--...... ..-+++.|||++.+-++..++.||+++|.+.|||
T Consensus 2 d~~~viV~DnGTGfVKcGyAg~NFP~~~FPs~VGRPilR~~e~~g~~~iKD~mvGdeaselRs~L~i~YPmeNGivrnwd 81 (389)
T KOG0677|consen 2 DSRNVIVCDNGTGFVKCGYAGENFPTHIFPSIVGRPILRAEEKVGNIEIKDLMVGDEASELRSLLDINYPMENGIVRNWD 81 (389)
T ss_pred CCCCeEEEeCCCceEEeccccCCCcccccchhcCchhhhhhhhccCeehhhheccchHHHHHHHHhcCCccccccccChH
Confidence 34789999999999999999999999999999999854322111 1236788999999999999999999999999999
Q ss_pred HHHHHHHHhcccccccCCCCCceEEeeCCCCChHHHHHHHHHHhhhCCCCeeeechhhhHhhhhcCCCeEEEEecCCCce
Q 037845 83 DMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVS 162 (314)
Q Consensus 83 ~le~~l~~~~~~~l~~~~~~~~vll~~~~~~~~~~~~~~~~~lfe~~~~~~v~~~~~~~~a~~~~g~~t~lVVDiG~~~t 162 (314)
+++++|+|.|.++|+++|.+..+++++||++|.+.||++++.+||+++|.++|+.-++++++|+.|..||+|||.|.+.|
T Consensus 82 dM~h~WDytF~ekl~idp~~~KiLLTePPmNP~kNREKm~evMFEkY~F~gvyvaiQAVLtLYAQGL~tGvVvDSGDGVT 161 (389)
T KOG0677|consen 82 DMEHVWDYTFGEKLKIDPTNCKILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVAIQAVLTLYAQGLLTGVVVDSGDGVT 161 (389)
T ss_pred HHHHHHHhhhhhhccCCCccCeEEeeCCCCCccccHHHHHHHHHHHcCCCeEEehHHHHHHHHHhcccceEEEecCCCee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeCCeeccccceEecchHHHHHHHHHHHHHhcCCccccccHHHHHHHHHhhccccccCHHHHHHhhcCCCCCcceE
Q 037845 163 HTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNY 242 (314)
Q Consensus 163 ~i~pV~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (314)
.|+||++|+.++|-.++++++|++++++|.++|..+++.++.+.+++.++.+|+++||++.|++.+.+.+........+|
T Consensus 162 Hi~PVye~~~l~HLtrRldvAGRdiTryLi~LLl~rGYafN~tADFETVR~iKEKLCYisYd~e~e~kLalETTvLv~~Y 241 (389)
T KOG0677|consen 162 HIVPVYEGFVLPHLTRRLDVAGRDITRYLIKLLLRRGYAFNHTADFETVREIKEKLCYISYDLELEQKLALETTVLVESY 241 (389)
T ss_pred EEeeeecceehhhhhhhccccchhHHHHHHHHHHhhccccccccchHHHHHHHhhheeEeechhhhhHhhhhheeeeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999988887777777788999
Q ss_pred ECCCCCeEeeCCeeeecccccCCCCcCCCCCCCHHHHHHHHHHhCChhHHHhhhcCeEEecCCCCCCCCC
Q 037845 243 ELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPVLP 312 (314)
Q Consensus 243 ~lp~~~~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~nIvl~GG~s~i~G~~ 312 (314)
.+|||+.|.++.|||.+||.||.|..++.+.+++.++++++|+..++|.|..++.+|+|+||+++-||++
T Consensus 242 tLPDGRvIkvG~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R~~lYkhIVLSGGstMYPGLP 311 (389)
T KOG0677|consen 242 TLPDGRVIKVGGERFEAPEALFQPHLINVEGPGVAELLFNTIQAADIDIRSELYKHIVLSGGSTMYPGLP 311 (389)
T ss_pred ecCCCcEEEecceeccCchhhcCcceeccCCCcHHHHHHHHHHHhccchHHHHHhHeeecCCcccCCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999986
No 7
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton]
Probab=100.00 E-value=4.1e-65 Score=437.12 Aligned_cols=308 Identities=37% Similarity=0.696 Sum_probs=265.6
Q ss_pred CCCCCCCCcEEEeCCCccEEEEEeCCCCCCccCCceeeecCCCCccccCCCccccccccc-ccccCCceeeCcccCCccC
Q 037845 1 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA-QSKRGILTLKYPIEHGIVS 79 (314)
Q Consensus 1 ~~~~~~~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~-~~~~~~~~~~~p~~~g~i~ 79 (314)
|+++|+..+||||+||+++|+||||+|.|++++||.++.....+.. ..+...+++++++ ...+....++.|+++|.+.
T Consensus 5 ~yggdEv~alViDpGS~~traGyaged~Pk~ilPS~~G~~tk~~~d-~~~~~~~y~~~~ai~~pr~gmEv~~~i~nGlv~ 83 (426)
T KOG0679|consen 5 VYGGDEVSALVIDPGSHTTRAGYAGEDSPKAILPSVYGKVTKTDGD-AEDKKGYYVDENAIHVPRPGMEVKTPIKNGLVE 83 (426)
T ss_pred cccccccceEEEeCCCceEeccccCCCCccccccceeeeeecccCc-cccccceEeechhccCCCCCCeeccchhcCCcc
Confidence 5678999999999999999999999999999999999964322111 1123456888877 4467888999999999999
Q ss_pred CHHHHHHHHHHhcccccccCCCCCceEEeeCCCCChHHHHHHHHHHhhhCCCCeeeechhhhHhhhhcCCCeEEEEecCC
Q 037845 80 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGD 159 (314)
Q Consensus 80 ~~~~le~~l~~~~~~~l~~~~~~~~vll~~~~~~~~~~~~~~~~~lfe~~~~~~v~~~~~~~~a~~~~g~~t~lVVDiG~ 159 (314)
|||.++.+|+|.|.++|+.+|.++|++++||+++++..|++++|++||+|++|++++++.++|++|++|+.||||||+|+
T Consensus 84 dWD~~~~~w~~~~~~~Lk~~p~ehP~litEp~wN~~~~Rek~~ElmFE~~nvPAf~L~k~~v~~AFA~GrstalVvDiGa 163 (426)
T KOG0679|consen 84 DWDLFEMQWRYAYKNQLKVNPEEHPVLITEPPWNTRANREKLTELMFEKLNVPAFYLAKTAVCTAFANGRSTALVVDIGA 163 (426)
T ss_pred cHHHHHHHHHHHHhhhhhcCccccceeeecCCCCcHHHHHHHHHHHHhhcCCceEEEechHHHHHHhcCCCceEEEEecC
Confidence 99999999999998899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEeeCCeeccccceEecchHHHHHHHHHHHHHhcCCccccc---------------------------------c
Q 037845 160 GVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTT---------------------------------A 206 (314)
Q Consensus 160 ~~t~i~pV~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~---------------------------------~ 206 (314)
.+|+|+||+||+++.+++++.++||+.|+..++++|...+.++... .
T Consensus 164 ~~~svsPV~DG~Vlqk~vvks~laGdFl~~~~~q~l~~~~iei~P~y~ia~k~~v~~g~~an~~~~~~~~d~tes~~~y~ 243 (426)
T KOG0679|consen 164 THTSVSPVHDGYVLQKGVVKSPLAGDFLNDQCRQLLEPKNIEIIPMYNIASKEPVREGYPANAVLRVSIPDLTESYHNYM 243 (426)
T ss_pred CCceeeeeecceEeeeeeEecccchHHHHHHHHHHHhhcCcccCcHHHhhhcccccccCcchhhhcCChhHHHHHHHHHH
Confidence 9999999999999999999999999999999999998876532110 1
Q ss_pred HHHHHHHHHhhccccccCH-HHHHHhhcCCCCCcceEECCCCCeEeeCCeeeecccccCCCCcCC------------CCC
Q 037845 207 EREIVRDMKEKLAYVALDY-EQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIG------------MEA 273 (314)
Q Consensus 207 ~~~~~~~ik~~~~~~~~~~-~~~~~~~~~~~~~~~~~~lp~~~~i~i~~~~~~~~E~lF~p~~~~------------~~~ 273 (314)
...++++.|++++.++... +++. .....+++|++|||++.+++.+||++||.||+|+... ...
T Consensus 244 ~~~v~~e~ke~v~qv~dtp~de~~----~~~i~~~~~efP~g~~~~~G~er~ripe~lF~Ps~v~~~s~~~~~~~~~n~~ 319 (426)
T KOG0679|consen 244 EQRVYQEFKESVLQVSDTPFDEEV----AAQIPTKHFEFPDGYTLDFGAERFRIPEYLFKPSLVKSSSKEAGATSHINTM 319 (426)
T ss_pred HHHHHHHHHHHHHhccCCCCcccc----cccCCCccccCCCCcccccCcceeecchhhcCcchhccccccccCCCCCccc
Confidence 2335566677777665422 2211 1235678999999999999999999999999998752 234
Q ss_pred CCHHHHHHHHHHhCChhHHHhhhcCeEEecCCCCCCCCCC
Q 037845 274 AGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPVLPT 313 (314)
Q Consensus 274 ~~l~~~i~~~i~~~~~d~r~~l~~nIvl~GG~s~i~G~~e 313 (314)
.++++++..+|..||+|+|..|++|||+|||+|+|+||.|
T Consensus 320 lG~~~lv~sSi~~cDvdiR~~L~~nVivtGGtSliqG~s~ 359 (426)
T KOG0679|consen 320 LGLPHLVYSSINMCDVDIRSSLLGNVIVTGGTSLIQGFSE 359 (426)
T ss_pred cCchHHHHhhhccChHHHHHHhhccEEEecCcchhhhHHH
Confidence 5899999999999999999999999999999999999975
No 8
>PTZ00280 Actin-related protein 3; Provisional
Probab=100.00 E-value=1.5e-63 Score=460.04 Aligned_cols=307 Identities=42% Similarity=0.736 Sum_probs=273.7
Q ss_pred CCcEEEeCCCccEEEEEeCCCCCCccCCceeeecCCCCcc---ccCCCcccccccccccccCCceeeCcccCCccCCHHH
Q 037845 7 IQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVM---VGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDD 83 (314)
Q Consensus 7 ~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~~~~~~~~~~~---~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~~~~~ 83 (314)
.++||||+||+++|+||||++.|++++||++++++..... .+....++++|+++...+..+.+++|+++|.|.|||.
T Consensus 4 ~~~iViD~GS~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~vG~ea~~~~~~~~l~~Pi~~G~I~dwd~ 83 (414)
T PTZ00280 4 LPVVVIDNGTGYTKMGYAGNTEPTYIIPTLIADNSKQSRRRSKKGFEDLDFYIGDEALAASKSYTLTYPMKHGIVEDWDL 83 (414)
T ss_pred CCeEEEECCCCceEeeeCCCCCCCEEecceeEEeccccccccccccccCCEEEcchhhhCcCCcEEecCccCCEeCCHHH
Confidence 5689999999999999999999999999999987653110 1112336789999988778889999999999999999
Q ss_pred HHHHHHHhcccccccCCCCCceEEeeCCCCChHHHHHHHHHHhhhCCCCeeeechhhhHhhhhc----------CCCeEE
Q 037845 84 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYAS----------GRTTGI 153 (314)
Q Consensus 84 le~~l~~~~~~~l~~~~~~~~vll~~~~~~~~~~~~~~~~~lfe~~~~~~v~~~~~~~~a~~~~----------g~~t~l 153 (314)
++.+|+++|.+.|++++.++|+++++|+++++..|++++|++||.|++|++++..++++|+|++ |.+|||
T Consensus 84 ~e~l~~~~~~~~L~~~p~~~~vllte~~~~~~~~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~g~~tgl 163 (414)
T PTZ00280 84 MEKFWEQCIFKYLRCEPEEHYFILTEPPMNPPENREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELGGTLTGT 163 (414)
T ss_pred HHHHHHHHHHHhhccCCCCCceEEeeCCCCcHHHHHHHHHHHhhccCCCeEEEecCHHHhHhhhcccccccccCCceeEE
Confidence 9999999998899999999999999999999999999999999999999999999999999999 999999
Q ss_pred EEecCCCceEEEEeeCCeeccccceEecchHHHHHHHHHHHHHhcCCccccccHHHHHHHHHhhccccccCHHHHHHhhc
Q 037845 154 VLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAK 233 (314)
Q Consensus 154 VVDiG~~~t~i~pV~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~ 233 (314)
|||+|++.|+|+||++|+++.++.+++++||++++++|.++|.+++..+......+.++++|+++||++.++.++.+...
T Consensus 164 VVDiG~~~T~i~PV~~G~~l~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~e~~~~~ 243 (414)
T PTZ00280 164 VIDSGDGVTHVIPVVDGYVIGSSIKHIPLAGRDITNFIQQMLRERGEPIPAEDILLLAQRIKEKYCYVAPDIAKEFEKYD 243 (414)
T ss_pred EEECCCCceEEEEEECCEEcccceEEecCcHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCcccCcHHHHHHHhh
Confidence 99999999999999999999999999999999999999999998887776555678999999999999999888776543
Q ss_pred CC-CCCcceEECCC---CC--eEeeCCeeeecccccCCCCcCCCC-CCCHHHHHHHHHHhCChhHHHhhhcCeEEecCCC
Q 037845 234 SS-SSVEKNYELPD---GQ--IITIGAERFRCPEVLFQPSLIGME-AAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGST 306 (314)
Q Consensus 234 ~~-~~~~~~~~lp~---~~--~i~i~~~~~~~~E~lF~p~~~~~~-~~~l~~~i~~~i~~~~~d~r~~l~~nIvl~GG~s 306 (314)
.. ......|.+|| |+ .+.++.+|+.+||+||+|+..+.+ ..+|+++|.++|++||+|+|++|++||+|+||+|
T Consensus 244 ~~~~~~~~~~~~~d~~~g~~~~i~l~~erf~~~E~LF~P~~~~~~~~~gl~e~i~~sI~~~~~d~r~~L~~nIvL~GG~s 323 (414)
T PTZ00280 244 SDPKNHFKKYTAVNSVTKKPYTVDVGYERFLGPEMFFHPEIFSSEWTTPLPEVVDDAIQSCPIDCRRPLYKNIVLSGGST 323 (414)
T ss_pred cCcccccceEECCCCCCCCccEEEechHHhcCcccccChhhcCCccCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCcc
Confidence 21 22345688887 33 789999999999999999987654 4599999999999999999999999999999999
Q ss_pred CCCCCCC
Q 037845 307 MFPVLPT 313 (314)
Q Consensus 307 ~i~G~~e 313 (314)
++|||+|
T Consensus 324 ~~~Gf~e 330 (414)
T PTZ00280 324 MFKGFDK 330 (414)
T ss_pred cCcCHHH
Confidence 9999976
No 9
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=100.00 E-value=1.2e-62 Score=453.37 Aligned_cols=304 Identities=49% Similarity=0.911 Sum_probs=263.5
Q ss_pred CCCCCcEEEeCCCccEEEEEeCCCCCCccCCceeeecCCCCccccCCCcccccccccccccCCceeeCcccCCccCCHHH
Q 037845 4 AEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDD 83 (314)
Q Consensus 4 ~~~~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~~~~~ 83 (314)
+|+.++||||+||+++|+|||||+.|++++||+++++..... ...+++|+++........+++|+++|.+.||+.
T Consensus 1 ~d~~~~vViD~Gs~~~k~G~age~~P~~v~ps~~~~~~~~~~-----~~~~~~g~~~~~~~~~~~~~~p~~~g~i~~~~~ 75 (393)
T PF00022_consen 1 GDENKPVVIDNGSSTIKAGFAGEDLPRVVIPSVVGRPRDKNS-----SNDYYVGDEALSPRSNLELRSPIENGVIVDWDA 75 (393)
T ss_dssp -TSSSEEEEEECSSEEEEEETTSSS-SEEEESEEEEESSSSS-----SSSCEETHHHHHTGTGEEEEESEETTEESSHHH
T ss_pred CCCCCEEEEECCCceEEEEECCCCCCCCcCCCcccccccccc-----ceeEEeecccccchhheeeeeeccccccccccc
Confidence 589999999999999999999999999999999998876431 126788988655677788999999999999999
Q ss_pred HHHHHHHhcccccccCCCCCceEEeeCCCCChHHHHHHHHHHhhhCCCCeeeechhhhHhhhhcCCCeEEEEecCCCceE
Q 037845 84 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSH 163 (314)
Q Consensus 84 le~~l~~~~~~~l~~~~~~~~vll~~~~~~~~~~~~~~~~~lfe~~~~~~v~~~~~~~~a~~~~g~~t~lVVDiG~~~t~ 163 (314)
++.+|+++|.+.|+.++.++|+++++|+++++..|+++++++||+|++|+++++++++||+|++|.+||||||+|++.|+
T Consensus 76 ~e~i~~~~~~~~l~~~~~~~~vll~~~~~~~~~~r~~l~e~lfE~~~~~~v~~~~~~~~a~~~~g~~tglVVD~G~~~t~ 155 (393)
T PF00022_consen 76 LEEIWDYIFSNLLKVDPSDHPVLLTEPPFNPRSQREKLAEILFEKFGVPSVYFIPSPLLALYASGRTTGLVVDIGYSSTS 155 (393)
T ss_dssp HHHHHHHHHHTTT-SSGGGSEEEEEESTT--HHHHHHHHHHHHHTS--SEEEEEEHHHHHHHHTTBSSEEEEEESSS-EE
T ss_pred cccccccccccccccccccceeeeeccccCCchhhhhhhhhhhcccccceeeeeecccccccccccccccccccceeeee
Confidence 99999999988899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeCCeeccccceEecchHHHHHHHHHHHHHhcCC-----------------ccccccHHHHHHHHHhhccccccCHH
Q 037845 164 TVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGY-----------------MFTTTAEREIVRDMKEKLAYVALDYE 226 (314)
Q Consensus 164 i~pV~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~-----------------~~~~~~~~~~~~~ik~~~~~~~~~~~ 226 (314)
|+||+||+++.++.+++++||++++++|.++|.+++. .+....+...++++|++.|+++.+..
T Consensus 156 v~pV~dG~~~~~~~~~~~~GG~~lt~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~ 235 (393)
T PF00022_consen 156 VVPVVDGYVLPHSIKRSPIGGDDLTEYLKELLKERNIQINPSYLIKSKSPVEGESYNNSDDEEIVEEIKEECCYVSEDPD 235 (393)
T ss_dssp EEEEETTEE-GGGBEEES-SHHHHHHHHHHHHHHT-SS--GCCCCCCHCCC-TCHHSSHHHHHHHHHHHHHHHSGGSSHH
T ss_pred eeeeeeccccccccccccccHHHHHHHHHHHHHhhccccccccccccccccccccccchhhhccchhccchhhhcccccc
Confidence 9999999999999999999999999999999998632 23334567889999999999999877
Q ss_pred HHHHhhcCCCCCcceEECCCCCeEeeCCeeeecccccCCCCcCCCCCC-------CHHHHHHHHHHhCChhHHHhhhcCe
Q 037845 227 QELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAA-------GIHETTYNSIMKCDVDIRKDLYGNI 299 (314)
Q Consensus 227 ~~~~~~~~~~~~~~~~~lp~~~~i~i~~~~~~~~E~lF~p~~~~~~~~-------~l~~~i~~~i~~~~~d~r~~l~~nI 299 (314)
.. +...........|.+|||+.+.++.+|+.+||+||+|+..+.+.. +|+++|.++|++||+|.|+.|++||
T Consensus 236 ~~-~~~~~~~~~~~~~~lPdg~~i~~~~er~~~~E~LF~p~~~~~~~~~~~~~~~gL~~~I~~si~~~~~d~r~~l~~nI 314 (393)
T PF00022_consen 236 EE-QEEQASENPEKSYELPDGQTIILGKERFRIPEILFNPSLIGIDSASEPSEFMGLPELILDSISKCPIDLRKELLSNI 314 (393)
T ss_dssp HH-HHHHHCSTTTEEEE-TTSSEEEESTHHHHHHHTTTSGGGGTSSSTS---SSSCHHHHHHHHHHTSTTTTHHHHHTTE
T ss_pred cc-cccccccccceecccccccccccccccccccccccccccccccccccccccchhhhhhhhhhhccccccccccccce
Confidence 51 111112455678999999999999999999999999999887766 9999999999999999999999999
Q ss_pred EEecCCCCCCCCCC
Q 037845 300 VLSGGSTMFPVLPT 313 (314)
Q Consensus 300 vl~GG~s~i~G~~e 313 (314)
+||||+|++|||.|
T Consensus 315 vl~GG~S~i~G~~e 328 (393)
T PF00022_consen 315 VLTGGSSLIPGFKE 328 (393)
T ss_dssp EEESGGGGSTTHHH
T ss_pred EEecccccccchHH
Confidence 99999999999975
No 10
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=100.00 E-value=1.7e-61 Score=442.32 Aligned_cols=305 Identities=68% Similarity=1.154 Sum_probs=276.8
Q ss_pred CcEEEeCCCccEEEEEeCCCCCCccCCceeeecCCCCccccCCCcccccccccccccCCceeeCcccCCccCCHHHHHHH
Q 037845 8 QPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKI 87 (314)
Q Consensus 8 ~~vViD~Gs~~~k~G~ag~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~~~~~le~~ 87 (314)
++||||+||+++|+||+|++.|++++||+++++++.....+ +...+++|+++...++...+++|+++|.+.||+.++.+
T Consensus 2 ~~iviD~Gs~~~k~G~~~~~~P~~~~ps~v~~~~~~~~~~~-~~~~~~~G~~a~~~~~~~~~~~P~~~G~i~d~~~~e~i 80 (373)
T smart00268 2 PAIVIDNGSGTIKAGFAGEDEPQVVFPSIVGRPKDGKGMVG-DAKDTFVGDEAQEKRGGLELKYPIEHGIVENWDDMEKI 80 (373)
T ss_pred CeEEEECCCCcEEEeeCCCCCCcEEccceeeEecccccccC-CCcceEecchhhhcCCCceecCCCcCCEEeCHHHHHHH
Confidence 58999999999999999999999999999998865431110 23467899998776666689999999999999999999
Q ss_pred HHHhcccccccCCCCCceEEeeCCCCChHHHHHHHHHHhhhCCCCeeeechhhhHhhhhcCCCeEEEEecCCCceEEEEe
Q 037845 88 WHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPI 167 (314)
Q Consensus 88 l~~~~~~~l~~~~~~~~vll~~~~~~~~~~~~~~~~~lfe~~~~~~v~~~~~~~~a~~~~g~~t~lVVDiG~~~t~i~pV 167 (314)
|+++|.+.|+.++.++|+++++|.+.++..|+++++++||.+++|++++++++++|+|++|.++|||||+|++.|+|+||
T Consensus 81 ~~~~~~~~l~~~~~~~~vll~~p~~~~~~~r~~~~e~lfE~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~v~pv 160 (373)
T smart00268 81 WDYTFFNELRVEPEEHPVLLTEPPMNPKSNREKILEIMFETFNFPALYIAIQAVLSLYASGRTTGLVIDSGDGVTHVVPV 160 (373)
T ss_pred HHHHHhhhcCCCCccCeeEEecCCCCCHHHHHHHHHHhhccCCCCeEEEeccHHHHHHhCCCCEEEEEecCCCcceEEEE
Confidence 99999888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCeeccccceEecchHHHHHHHHHHHHHhcCCccccccHHHHHHHHHhhccccccCHHHHHHhhcC---CCCCcceEEC
Q 037845 168 YEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKS---SSSVEKNYEL 244 (314)
Q Consensus 168 ~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l 244 (314)
+||+++.++.+++++||++++++|.++|+.++..+....+.+.++++|+++|+++.+++++.+.... .......|++
T Consensus 161 ~~G~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l 240 (373)
T smart00268 161 VDGYVLPHAIKRIDIAGRDLTDYLKELLSERGYQFNSSAEFEIVREIKEKLCYVAEDFEKEMKKARESSESSKLEKTYEL 240 (373)
T ss_pred ECCEEchhhheeccCcHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHhhhheeeecCChHHHHHHhhhcccccccceeEEC
Confidence 9999999999999999999999999999886655555667889999999999999998877665432 2345678999
Q ss_pred CCCCeEeeCCeeeecccccCCCCcCCCCCCCHHHHHHHHHHhCChhHHHhhhcCeEEecCCCCCCCCCC
Q 037845 245 PDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPVLPT 313 (314)
Q Consensus 245 p~~~~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~nIvl~GG~s~i~G~~e 313 (314)
|||+.+.++.+|+.+||.||+|+..+.+..+|+++|.++|++||+|.|+.|++||+||||+|++|||.+
T Consensus 241 pdg~~~~~~~er~~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvltGG~s~i~Gl~~ 309 (373)
T smart00268 241 PDGNTIKVGNERFRIPEILFKPELIGLEQKGIHELVYESIQKCDIDVRKDLYENIVLSGGSTLIPGFGE 309 (373)
T ss_pred CCCCEEEEChHHeeCchhcCCchhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCeEeecccccCcCHHH
Confidence 999999999999999999999999888889999999999999999999999999999999999999975
No 11
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=100.00 E-value=1.9e-60 Score=434.93 Aligned_cols=305 Identities=70% Similarity=1.168 Sum_probs=277.0
Q ss_pred cEEEeCCCccEEEEEeCCCCCCccCCceeeecCCCCccccCCCcccccccccccccC-CceeeCcccCCccCCHHHHHHH
Q 037845 9 PLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRG-ILTLKYPIEHGIVSNWDDMEKI 87 (314)
Q Consensus 9 ~vViD~Gs~~~k~G~ag~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~-~~~~~~p~~~g~i~~~~~le~~ 87 (314)
+||||+||+++|+||+|++.|++++||++++++.+....+.+...+++|+++..... .+.+++|+++|.+.||+.++.+
T Consensus 1 ~iViD~Gs~~~r~G~a~~~~p~~~~ps~v~~~~~~~~~~~~~~~~~~~G~~a~~~~~~~~~~~~P~~~G~i~d~~~~e~~ 80 (371)
T cd00012 1 AVVIDNGSGTIKAGFAGEDAPRVVFPSCVGRPKHQSVMVGAGDKDYFVGEEALEKRGLGLELIYPIEHGIVVDWDDMEKI 80 (371)
T ss_pred CEEEECCCCeEEEEeCCCCCCceEeeccceeecCcccccccCCCceEEchhhhhCCCCceEEcccccCCEEeCHHHHHHH
Confidence 699999999999999999999999999999987654333334567899999876554 3789999999999999999999
Q ss_pred HHHhcccccccCCCCCceEEeeCCCCChHHHHHHHHHHhhhCCCCeeeechhhhHhhhhcCCCeEEEEecCCCceEEEEe
Q 037845 88 WHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPI 167 (314)
Q Consensus 88 l~~~~~~~l~~~~~~~~vll~~~~~~~~~~~~~~~~~lfe~~~~~~v~~~~~~~~a~~~~g~~t~lVVDiG~~~t~i~pV 167 (314)
|+++|.+.+..+++++|+++++|+++++..|+++++++||.+++|++++++++++|+|++|.++|||||+|++.|+|+||
T Consensus 81 ~~~~~~~~l~~~~~~~~vvl~~p~~~~~~~r~~~~e~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~i~pv 160 (371)
T cd00012 81 WDHLFFNELKVNPEEHPVLLTEPPLNPKSNREKTTEIMFETFNVPALYVAIQAVLSLYASGRTTGLVVDSGDGVTHVVPV 160 (371)
T ss_pred HHHHHHHhcCCCCCCCceEEecCCCCCHHHHHHHHHHhhccCCCCEEEEechHHHHHHhcCCCeEEEEECCCCeeEEEEE
Confidence 99999888888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCeeccccceEecchHHHHHHHHHHHHHhcCCccccccHHHHHHHHHhhccccccCHHHHHHhh-cCCCCCcceEECCC
Q 037845 168 YEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETA-KSSSSVEKNYELPD 246 (314)
Q Consensus 168 ~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~-~~~~~~~~~~~lp~ 246 (314)
+||+++.++.+++++||++++++|.++|+.++..+........++++|+++|+++.+++++.... .........|.+||
T Consensus 161 ~~G~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~lpd 240 (371)
T cd00012 161 YDGYVLPHAIKRLDLAGRDLTRYLKELLRERGYELNSSDEREIVRDIKEKLCYVALDIEEEQDKSAKETSLLEKTYELPD 240 (371)
T ss_pred ECCEEchhhheeccccHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHhheeecCCHHHHHHhhhccCCccceeEECCC
Confidence 99999999999999999999999999999888766666788999999999999999887665322 22334567899999
Q ss_pred CCeEeeCCeeeecccccCCCCcCCCCCCCHHHHHHHHHHhCChhHHHhhhcCeEEecCCCCCCCCCC
Q 037845 247 GQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPVLPT 313 (314)
Q Consensus 247 ~~~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~nIvl~GG~s~i~G~~e 313 (314)
++.+.++.+|+.+||+||+|+..+....+|+++|.++++.||.+.|+.+++||+||||+|++|||.+
T Consensus 241 ~~~i~~~~er~~~~E~lF~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~Ivl~GG~s~~~gl~~ 307 (371)
T cd00012 241 GRTIKVGNERFRAPEILFNPSLIGSEQVGISEAIYSSINKCDIDLRKDLYSNIVLSGGSTLFPGFGE 307 (371)
T ss_pred CeEEEEChHHhhChHhcCChhhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCEEEeCCccCCcCHHH
Confidence 9999999999999999999998888889999999999999999999999999999999999999975
No 12
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=100.00 E-value=4.6e-56 Score=405.54 Aligned_cols=310 Identities=54% Similarity=0.979 Sum_probs=274.6
Q ss_pred CCCCCcEEEeCCCccEEEEEeCCCCCCccCCceeeecC-CCCccccCCCcccccccccccccC--CceeeCcccCCccCC
Q 037845 4 AEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPR-HTGVMVGMGQKDAYVGDEAQSKRG--ILTLKYPIEHGIVSN 80 (314)
Q Consensus 4 ~~~~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~~~~~~-~~~~~~~~~~~~~~vg~~~~~~~~--~~~~~~p~~~g~i~~ 80 (314)
+++.++||||+||+++|+||+|++.|++++|+++++.+ +...+.+.++...++|+++...++ ...+++|+++|.+.|
T Consensus 3 ~~~~~~iVIDnGS~~~k~Gfag~~~P~~V~ps~~~~~~~~~~~~~~~~~~~~~v~ne~~~~~~~~~~~~~~p~~~g~i~~ 82 (444)
T COG5277 3 GDNVPTIVIDNGSGTTKAGFAGNDTPTTVFPSIVGRRRDEDSVMEDTEEKDTYVGNEAQNDRDNSLLELRYPIENGIILN 82 (444)
T ss_pred CCCCCeEEEeCCCceEEeeecCCCCceeecccccccccccccccccccccccccCchhhhccCCccceeecccccCccCC
Confidence 44555699999999999999999999999999999986 444455556778899999977666 678999999999999
Q ss_pred HHHHHHHHHHhccc--ccccCCCCCceEEeeCCCCChHHHHHHHHHHhhhCCCCeeeechhhhHhhhhcCCC--eEEEEe
Q 037845 81 WDDMEKIWHHTFYN--ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRT--TGIVLD 156 (314)
Q Consensus 81 ~~~le~~l~~~~~~--~l~~~~~~~~vll~~~~~~~~~~~~~~~~~lfe~~~~~~v~~~~~~~~a~~~~g~~--t~lVVD 156 (314)
|++++++|+++|.+ .+...+.++|+++++|++++.+.|+++++++||++++|++++..+++|++|+.|.. +|||||
T Consensus 83 W~~~e~~w~~~~~~~~~~~~~~~~~pllltep~~n~~~~re~~~e~~fE~~~vp~~~~~~~~~l~~ya~g~~~~~g~ViD 162 (444)
T COG5277 83 WDAMEQIWDYTFFNKGDLLPSPEEHPLLLTEPPLNPPSNREKITELLFETLNVPALYLAIQAVLSLYASGSSDETGLVID 162 (444)
T ss_pred cHHHHHHHHHhhcchhhccCCCcCCceEEeccCCCcHHHHHHHHHHHHHhcCCcceEeeHHHHHHHHhcCCCCCceEEEE
Confidence 99999999999998 68888999999999999999999999999999999999999999999999999999 999999
Q ss_pred cCCCceEEEEeeCCeeccccceEecchHHHHHHHHHHHHHh-----cCCccccc---cHHHHHHHHHhhcc-------cc
Q 037845 157 SGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTE-----RGYMFTTT---AEREIVRDMKEKLA-------YV 221 (314)
Q Consensus 157 iG~~~t~i~pV~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~-----~~~~~~~~---~~~~~~~~ik~~~~-------~~ 221 (314)
+|++.|+|+||+||.++.++.+++++||++++.+|.++|.. +++.+... .+.++++.+|++.| |+
T Consensus 163 ~G~~~t~v~PV~DG~~l~~a~~ri~~gG~~it~~l~~lL~~~~~~~~~~~l~~e~~~~~~ei~~~ik~e~~~~~~~~~y~ 242 (444)
T COG5277 163 SGDSVTHVIPVVDGIVLPKAVKRIDIGGRDITDYLKKLLREKYPPSRGYNLKSELVEYSSEIVNEIKEEVCETDDESAYV 242 (444)
T ss_pred cCCCceeeEeeeccccccccceeeecCcHHHHHHHHHHHhhcccccCCcccccccccccHHHHHHHHHhhccccccccch
Confidence 99999999999999999999999999999999999999998 44444444 46899999999999 77
Q ss_pred ccCHHHHHHhhcC----------------CCCCcceEECCCCCeEeeCCe-eeecccccCCCC--cCCCCCCC-------
Q 037845 222 ALDYEQELETAKS----------------SSSVEKNYELPDGQIITIGAE-RFRCPEVLFQPS--LIGMEAAG------- 275 (314)
Q Consensus 222 ~~~~~~~~~~~~~----------------~~~~~~~~~lp~~~~i~i~~~-~~~~~E~lF~p~--~~~~~~~~------- 275 (314)
..+.+++.+...+ .......++.|+++.+.++.+ ||.+||.||.|. ..+.+.++
T Consensus 243 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~e~rf~~pE~lF~pe~~~~~l~~~~~~~~~~~ 322 (444)
T COG5277 243 SLDAEEEFEEEEEKPAEKSTESTFQLSKETSIAKESKELPDGEEIEFGNEERFKAPEILFKPELPISGLEEAGKIDESKQ 322 (444)
T ss_pred hhcchHHHHHHhhhhhhhcccccccccchhccccccccCCCCceEeechhhhhhcchhhcCCccccccccccccchhhhh
Confidence 7665544433322 234456789999999999999 999999999999 66555555
Q ss_pred --------------------HHHHHHHHHHhCChhHHHhhhcCeEEecCCCCCCCCCC
Q 037845 276 --------------------IHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPVLPT 313 (314)
Q Consensus 276 --------------------l~~~i~~~i~~~~~d~r~~l~~nIvl~GG~s~i~G~~e 313 (314)
|++++.++|..+|.+.|+.|++||+||||+|++|||.+
T Consensus 323 ~~~~~~~~~~~~~~~~~~~gl~e~v~~si~~~~~~~r~~l~~nivitGGts~~pg~~~ 380 (444)
T COG5277 323 ELVAENYEISPTNLGNDIAGLPELVYQSIQICDEDVRKSLYSNIVLTGGTSKIPGFAE 380 (444)
T ss_pred hhhhhccccccccccccccchHHHHHHHHHhccHHHHHHHhhCEEEecCccCCCCHHH
Confidence 99999999999999999999999999999999999964
No 13
>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton]
Probab=100.00 E-value=4.4e-53 Score=355.01 Aligned_cols=298 Identities=30% Similarity=0.562 Sum_probs=262.5
Q ss_pred CCCcEEEeCCCccEEEEEeCCCCCCccCCceeeecCCCCccccCCCcccccccccccccCC--ceeeCcccCCccCCHHH
Q 037845 6 DIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGI--LTLKYPIEHGIVSNWDD 83 (314)
Q Consensus 6 ~~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~--~~~~~p~~~g~i~~~~~ 83 (314)
+..+||+|+|++++|+|+++...|. ++|+|..+.++ +..+.++|++..+.++. +..++|+++|.+.||+.
T Consensus 2 ~~~tiVlDNGay~~KiG~s~~~~p~-~vpNcl~kaK~-------~~rr~f~~nei~ec~D~ssL~y~rp~erGyLvnW~t 73 (400)
T KOG0680|consen 2 ETTTIVLDNGAYNIKIGPSTNKKPF-VVPNCLAKAKF-------GRRRSFLANEIDECKDISSLFYRRPHERGYLVNWDT 73 (400)
T ss_pred CCceEEEcCCceeEEeccCCCCCce-eccchhhhccc-------ccchhhhhhhhhhccCccceEEeehhhcceeEeehh
Confidence 3789999999999999999999998 68999988775 33568899888776544 46678999999999999
Q ss_pred HHHHHHHhcccc-cccCCCCCceEEeeCCCCChHHHHHHHHHHhhhCCCCeeeechhhhHhhhhc----C-------CCe
Q 037845 84 MEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYAS----G-------RTT 151 (314)
Q Consensus 84 le~~l~~~~~~~-l~~~~~~~~vll~~~~~~~~~~~~~~~~~lfe~~~~~~v~~~~~~~~a~~~~----g-------~~t 151 (314)
-..+|+++|.+. +.+..+++.+++++|.++-++..+...|++||+|+|.+++=.+.+.++++-. + ...
T Consensus 74 q~~vWDy~f~~~~~~~~~~~~~ivlTep~~~~psi~~~t~eilFEey~fd~v~kttaa~lva~~~~~~~ne~~tt~~~~c 153 (400)
T KOG0680|consen 74 QSQVWDYCFGNPGFDVEGKDHNIVLTEPCMTFPSIQEHTDEILFEEYQFDAVLKTTAAVLVAFTKYVRNNEDSTTTSSEC 153 (400)
T ss_pred HHHHHHHHhcCCCcCcccCcceEEEecccccccchhhhHHHHHHHHhccceEeecCHHHhcchhhhccCCccccccccce
Confidence 999999999653 3466679999999999999999999999999999999999999999998861 2 238
Q ss_pred EEEEecCCCceEEEEeeCCeeccccceEecchHHHHHHHHHHHHHhcCCccccccHHHHHHHHHhhccccccCHHHHHHh
Q 037845 152 GIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELET 231 (314)
Q Consensus 152 ~lVVDiG~~~t~i~pV~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~ 231 (314)
++|||.|++.|.|+|+++|.+..++++++++||+.++++|++.+..+..+ -..+...++++|+++|||++|+.+.++.
T Consensus 154 ~lVIDsGysfThIip~v~g~~~~qaV~RiDvGGK~LTn~LKE~iSyR~lN--vmdET~vVNeiKEdvcfVSqnF~~~m~~ 231 (400)
T KOG0680|consen 154 CLVIDSGYSFTHIIPVVKGIPYYQAVKRIDVGGKALTNLLKETISYRHLN--VMDETYVVNEIKEDVCFVSQNFKEDMDI 231 (400)
T ss_pred EEEEeCCCceEEEehhhcCcchhhceEEeecchHHHHHHHHHHhhhhhhc--ccchhhhhhhhhhheEEechhhHHHHHH
Confidence 99999999999999999999999999999999999999999999887554 3557789999999999999999988876
Q ss_pred hcCC---CCCcceEECCC-------------------CCeEeeCCeeeecccccCCCCcCCCCCCCHHHHHHHHHHhCCh
Q 037845 232 AKSS---SSVEKNYELPD-------------------GQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDV 289 (314)
Q Consensus 232 ~~~~---~~~~~~~~lp~-------------------~~~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~ 289 (314)
+... +.....|.||| .|.|.+.+|||.+||+||+|+++++.+.+|+++|.+++..||.
T Consensus 232 ~~~k~~~~~~~i~YvLPDF~T~k~Gyvr~~~vk~~~d~qii~L~nErF~IPEilF~Psdi~I~q~GIpEAV~esl~~~Pe 311 (400)
T KOG0680|consen 232 AKTKFQENKVMIDYVLPDFSTSKRGYVRNEDVKLPEDEQIITLTNERFTIPEILFSPSDIGIQQPGIPEAVLESLSMLPE 311 (400)
T ss_pred HhhccccceeEEEEecCCcccccceeEecCCCCCCCCcceeeecccccccchhhcChhhcCcccCCchHHHHHHHHhCHH
Confidence 6533 23345677775 3578889999999999999999999999999999999999999
Q ss_pred hHHHhhhcCeEEecCCCCCCCCCC
Q 037845 290 DIRKDLYGNIVLSGGSTMFPVLPT 313 (314)
Q Consensus 290 d~r~~l~~nIvl~GG~s~i~G~~e 313 (314)
+.|+.|+.||+++||.+++|||.+
T Consensus 312 ~~~p~l~~NIv~iGGn~~fPgF~~ 335 (400)
T KOG0680|consen 312 EVRPLLLENIVCIGGNSNFPGFRQ 335 (400)
T ss_pred HHHHHHHhcEEEecCccCCcchHH
Confidence 999999999999999999999975
No 14
>KOG0678 consensus Actin-related protein Arp2/3 complex, subunit Arp3 [Cytoskeleton]
Probab=100.00 E-value=2.4e-45 Score=308.92 Aligned_cols=305 Identities=41% Similarity=0.703 Sum_probs=261.7
Q ss_pred CCcEEEeCCCccEEEEEeCCCCCCccCCceeeecCCCCc--------cccCCCcccccccccccccCCceeeCcccCCcc
Q 037845 7 IQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGV--------MVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIV 78 (314)
Q Consensus 7 ~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~~~~~~~~~~--------~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i 78 (314)
+.++|+|+|+.++|.||+|...|++++|++++....... +-+....++++|+++.. ...+.+.+|+++|.+
T Consensus 4 ~~p~V~d~Gtgytklg~agn~~p~~i~p~~ia~~~~~~~s~~~~~~~~~~~~dldf~ig~eal~-~~~ysl~ypiRhg~v 82 (415)
T KOG0678|consen 4 NLPCVIDNGTGYTKLGYAGNTEPQFIIPTAIAVKESAAVSSKATRRVKRGTEDLDFFIGDEALD-ATTYSLKYPIRHGQV 82 (415)
T ss_pred CCceeeccCcceeeeeccccCCcccccceeEEeccccccccchhhhhhccccccceecccHHHh-hcccccccceecccc
Confidence 455999999999999999999999999999876432211 12334457889999977 558899999999999
Q ss_pred CCHHHHHHHHHHhcccccccCCCCCceEEeeCCCCChHHHHHHHHHHhhhCCCCeeeechhhhHhhhhcC--------CC
Q 037845 79 SNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASG--------RT 150 (314)
Q Consensus 79 ~~~~~le~~l~~~~~~~l~~~~~~~~vll~~~~~~~~~~~~~~~~~lfe~~~~~~v~~~~~~~~a~~~~g--------~~ 150 (314)
.|||.+|++|...+.+.|...|+++--+|++|++++++.|+.+.+++||.|+||.+|+.-++++|+-++- .-
T Consensus 83 e~wd~mer~~~q~ifkylr~ePedh~fLlteppln~penreytaeImfEsfnvpglyiAVqavLALaaswts~~v~er~l 162 (415)
T KOG0678|consen 83 EDWDLMERFWEQCIFKYLRAEPEDHYFLLTEPPLNQPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERFL 162 (415)
T ss_pred ccHHHHHHHHhhhhhhhhcCCcccceEEecCCCCCCchhhHHHHHhhhhhccCchHHHHHHHHHHHHHHHHHhhhhhhee
Confidence 9999999999999999999999999999999999999999999999999999999999999999876542 35
Q ss_pred eEEEEecCCCceEEEEeeCCeeccccceEecchHHHHHHHHHHHHHhcCCccccccHHHHHHHHHhhccccccCHHHHHH
Q 037845 151 TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELE 230 (314)
Q Consensus 151 t~lVVDiG~~~t~i~pV~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~ 230 (314)
||+|+|.|.+-|.|.||.+|+++-++++.+|+.|++++..+.+++++++...+...+.+.++.+|+++||+++|+-.+..
T Consensus 163 tG~VidsGdgvThvipvaEgyVigScik~iPiagrdiT~fiQ~llRer~~~iP~e~sl~tak~iKe~ycy~cPdivkef~ 242 (415)
T KOG0678|consen 163 TGIVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLREREVGIPPEQSLETAKAIKEKYCYTCPDIVKEFA 242 (415)
T ss_pred eeEEEecCCCeeEEEEeecceEEeeeeccccccCCchhHHHHHHhhCCCCCCChHHhhhhhHHHHhhhcccCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888777778899999999999999999877766
Q ss_pred hhcCCCCCc-ceE---ECCCC--CeEeeCCeeeecccccCCCCcCCCC-CCCHHHHHHHHHHhCChhHHHhhhcCeEEec
Q 037845 231 TAKSSSSVE-KNY---ELPDG--QIITIGAERFRCPEVLFQPSLIGME-AAGIHETTYNSIMKCDVDIRKDLYGNIVLSG 303 (314)
Q Consensus 231 ~~~~~~~~~-~~~---~lp~~--~~i~i~~~~~~~~E~lF~p~~~~~~-~~~l~~~i~~~i~~~~~d~r~~l~~nIvl~G 303 (314)
+......+. +.| ..-.| ..++++.+||+.||++|+|.....+ -+.+++.+...|++||+|.|+-|++||++.|
T Consensus 243 k~d~ep~K~ikq~~~~~~i~~~~~~vDvgyerFlgpEiff~Pe~a~~d~~~~~~~~vd~~Iq~~pIdvrr~ly~nivlsg 322 (415)
T KOG0678|consen 243 KYDREPAKWIKQYTGINVITGKKFVVDVGYERFLGPEIFFHPEFANPDFLTPLSEVVDWVIQHCPIDVRRPLYKNIVLSG 322 (415)
T ss_pred HhccCHHHHHHHHhccchhcCCceeecccHHhhcChhhhcCccccCCccCcchHHHhhhhhhhCCcccchhhhhHHhhcc
Confidence 554322111 111 11122 2467799999999999999876543 3579999999999999999999999999999
Q ss_pred CCCCCCCCC
Q 037845 304 GSTMFPVLP 312 (314)
Q Consensus 304 G~s~i~G~~ 312 (314)
|.++.++|.
T Consensus 323 gst~fk~fg 331 (415)
T KOG0678|consen 323 GSTMFKDFG 331 (415)
T ss_pred chHHHHHhh
Confidence 999988764
No 15
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=100.00 E-value=6e-44 Score=317.98 Aligned_cols=214 Identities=29% Similarity=0.576 Sum_probs=178.8
Q ss_pred CCcEEEeCCCccEEEEEeCCCCCCccCCceeeecCCCCccccCCCcccccccccccccC-CceeeCcccCCccCCHHHHH
Q 037845 7 IQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRG-ILTLKYPIEHGIVSNWDDME 85 (314)
Q Consensus 7 ~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~-~~~~~~p~~~g~i~~~~~le 85 (314)
..|||||+||+.+||||+|+..|+++|++++.++++... +....+||++...... ....++||++.+|+||+.+|
T Consensus 23 ~~piVIDNGS~~~RaGw~ge~eP~lvFrNvl~r~Rdrk~----~~s~t~vgnd~~~~~~~Rs~~rSPFd~nVvtNwel~E 98 (645)
T KOG0681|consen 23 TIPIVIDNGSYECRAGWAGEKEPRLVFRNVLTRPRDRKL----GASVTLVGNDILNFQGVRSSPRSPFDRNVVTNWELME 98 (645)
T ss_pred CCcEEEeCCceeEeecccCCCCccchhhhhhcccccccc----ccccccccchhhhhhhhhccCCCCCcCCccccHHHHH
Confidence 578999999999999999999999999999999987542 2223367877654332 23568999999999999999
Q ss_pred HHHHHhcccccccCC--CCCceEEeeCCCCChHHHHHHHHHHhhhCCCCeeeechhhhHhhhh-cC---CCeEEEEecCC
Q 037845 86 KIWHHTFYNELRVAP--EEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYA-SG---RTTGIVLDSGD 159 (314)
Q Consensus 86 ~~l~~~~~~~l~~~~--~~~~vll~~~~~~~~~~~~~~~~~lfe~~~~~~v~~~~~~~~a~~~-~g---~~t~lVVDiG~ 159 (314)
.+++|+| .+|+.+. -++|++++|+.++|...|..+.++|||.+|+|+|.+--+++.|.|. ++ ..+|+||++|+
T Consensus 99 ~ilDY~F-~~LG~~~~~idhPIilTE~laNP~~~R~~m~elLFE~YgvP~V~yGIDslfS~~hN~~~~~~~~~liis~g~ 177 (645)
T KOG0681|consen 99 QILDYIF-GKLGVDGQGIDHPIILTEALANPVYSRSEMVELLFETYGVPKVAYGIDSLFSFYHNYGKSSNKSGLIISMGH 177 (645)
T ss_pred HHHHHHH-HhcCCCccCCCCCeeeehhccChHHHHHHHHHHHHHHcCCcceeechhhHHHHhhccCcccCcceEEEecCC
Confidence 9999999 6799987 4799999999999999999999999999999999999999999993 23 34799999999
Q ss_pred CceEEEEeeCCeeccccceEecchHHHHHHHHHHHHHhcCCccccccHHHHHHHHHhhccccccCH
Q 037845 160 GVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDY 225 (314)
Q Consensus 160 ~~t~i~pV~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~ 225 (314)
+.|.|.||+||..+....+++++||.++..||.++|..+++-+....+....++++..+|++++||
T Consensus 178 ~~T~vipvldG~~il~~~kRiN~GG~qa~dYL~~Lmq~Kyp~~~~~~t~sk~E~l~~eHcyis~DY 243 (645)
T KOG0681|consen 178 SATHVIPVLDGRLILKDVKRINWGGYQAGDYLSRLMQLKYPFHLNAFTGSKAERLLHEHCYISPDY 243 (645)
T ss_pred CcceeEEEecCchhhhcceeeccCcchHHHHHHHHHhccCccchhhcCHHHHHHHhhhhceeCcch
Confidence 999999999999999999999999999999999999887654433444444444544455544444
No 16
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=2.8e-36 Score=272.07 Aligned_cols=278 Identities=18% Similarity=0.245 Sum_probs=215.1
Q ss_pred cEEEeCCCccEEEEEeCCCCCCccCCceeeecCCCCccccCCCcccccccccccc----cCCceeeCcccCCccCCHHHH
Q 037845 9 PLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK----RGILTLKYPIEHGIVSNWDDM 84 (314)
Q Consensus 9 ~vViD~Gs~~~k~G~ag~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~----~~~~~~~~p~~~g~i~~~~~l 84 (314)
.++||+||+++|+|+++++ +.+..||+++..+.. +..+++|++|... .....+.+|+++|.+.||+.+
T Consensus 10 ~vgiDlGt~~t~i~~~~~~-~~~~~ps~v~~~~~~-------~~~~~vG~~A~~~~~~~~~~~~~~~pi~~G~i~d~~~~ 81 (335)
T PRK13930 10 DIGIDLGTANTLVYVKGKG-IVLNEPSVVAIDTKT-------GKVLAVGEEAKEMLGRTPGNIEAIRPLKDGVIADFEAT 81 (335)
T ss_pred ceEEEcCCCcEEEEECCCC-EEEecCCEEEEECCC-------CeEEEEcHHHHHhhhcCCCCeEEeecCCCCeEcCHHHH
Confidence 3999999999999998775 466789999876531 2357899998653 345678999999999999999
Q ss_pred HHHHHHhcccccccCC-CCCceEEeeCCCCChHHHHHHHHHHhhhCCCCeeeechhhhHhhhhcCC-----CeEEEEecC
Q 037845 85 EKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGR-----TTGIVLDSG 158 (314)
Q Consensus 85 e~~l~~~~~~~l~~~~-~~~~vll~~~~~~~~~~~~~~~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~t~lVVDiG 158 (314)
+.+|++++.+.+...+ ...+++++.|..++...|+.+.+ +||.+|++.++++++|+||+|++|. ++++|||+|
T Consensus 82 e~ll~~~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~-~~e~~g~~~~~lv~ep~AAa~a~g~~~~~~~~~lVvDiG 160 (335)
T PRK13930 82 EAMLRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVRE-AAEHAGAREVYLIEEPMAAAIGAGLPVTEPVGNMVVDIG 160 (335)
T ss_pred HHHHHHHHHHHhhcccCCCCcEEEEECCCCCHHHHHHHHH-HHHHcCCCeEEecccHHHHHHhcCCCcCCCCceEEEEeC
Confidence 9999999955444333 35688888988888887776555 7999999999999999999999986 578999999
Q ss_pred CCceEEEEeeCCeeccccceEecchHHHHHHHHHHHHHhcCCccccccHHHHHHHHHhhccccccCHHHHHHhhcCCCCC
Q 037845 159 DGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSV 238 (314)
Q Consensus 159 ~~~t~i~pV~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~ 238 (314)
+++|+++++.+|.++.. ...++||+++++.|.+++.++. .+ ....+.++++|+++|++..+.+.+..... ..
T Consensus 161 ~gttdvs~v~~g~~~~~--~~~~lGG~~id~~l~~~l~~~~-~~--~~~~~~ae~~K~~~~~~~~~~~~~~~~~~---~~ 232 (335)
T PRK13930 161 GGTTEVAVISLGGIVYS--ESIRVAGDEMDEAIVQYVRRKY-NL--LIGERTAEEIKIEIGSAYPLDEEESMEVR---GR 232 (335)
T ss_pred CCeEEEEEEEeCCEEee--cCcCchhHHHHHHHHHHHHHHh-CC--CCCHHHHHHHHHHhhcCcCCCCCceEEEE---Cc
Confidence 99999999999988753 4689999999999999987642 11 12457899999999988765322100000 00
Q ss_pred cceEECCCCCeEeeCCeeeecccccCCCCcCCCCCCCHHHHHHHHHHhCChhHHHhhhcC-eEEecCCCCCCCCCC
Q 037845 239 EKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGN-IVLSGGSTMFPVLPT 313 (314)
Q Consensus 239 ~~~~~lp~~~~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~n-Ivl~GG~s~i~G~~e 313 (314)
...+.+|+ .+.++.+++ .|++|+|. .++.+.|.+++++++.+.+..+++| |+|+||+|++|||.+
T Consensus 233 ~~~~~~~~--~~~i~~~~~--~e~i~~~~------~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~ 298 (335)
T PRK13930 233 DLVTGLPK--TIEISSEEV--REALAEPL------QQIVEAVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDK 298 (335)
T ss_pred cCCCCCCe--eEEECHHHH--HHHHHHHH------HHHHHHHHHHHHhCCHHHhhHHHhCCEEEECchhcchhHHH
Confidence 01112222 344555554 47777763 3789999999999999999999998 999999999999865
No 17
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=1.1e-35 Score=267.99 Aligned_cols=277 Identities=19% Similarity=0.245 Sum_probs=211.3
Q ss_pred CcEEEeCCCccEEEEEeCCCCCCccCCceeeecCCCCccccCCCcccccccccccc----cCCceeeCcccCCccCCHHH
Q 037845 8 QPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK----RGILTLKYPIEHGIVSNWDD 83 (314)
Q Consensus 8 ~~vViD~Gs~~~k~G~ag~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~----~~~~~~~~p~~~g~i~~~~~ 83 (314)
..|+||+||+++|+|++|++. .+.+||+++.++.+. ..+++|++|... .....+.+|+++|.+.||+.
T Consensus 6 ~~igIDlGt~~~~i~~~~~~~-~~~~ps~v~~~~~~~-------~~~~vG~~a~~~~~~~~~~~~~~~pi~~G~i~d~~~ 77 (334)
T PRK13927 6 NDLGIDLGTANTLVYVKGKGI-VLNEPSVVAIRTDTK-------KVLAVGEEAKQMLGRTPGNIVAIRPMKDGVIADFDV 77 (334)
T ss_pred ceeEEEcCcceEEEEECCCcE-EEecCCEEEEECCCC-------eEEEecHHHHHHhhcCCCCEEEEecCCCCeecCHHH
Confidence 359999999999999999876 568999999876421 356899999654 35567889999999999999
Q ss_pred HHHHHHHhcccccccCCCCCc-eEEeeCCCCChHHHHHHHHHHhhhCCCCeeeechhhhHhhhhcCC-----CeEEEEec
Q 037845 84 MEKIWHHTFYNELRVAPEEHP-VLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGR-----TTGIVLDS 157 (314)
Q Consensus 84 le~~l~~~~~~~l~~~~~~~~-vll~~~~~~~~~~~~~~~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~t~lVVDi 157 (314)
.+.+|++++.+.++. +..+| ++++.| .+.+..++++++.+|+.++++.++++++|+||++++|. ++++|||+
T Consensus 78 ~~~ll~~~~~~~~~~-~~~~~~~vi~vP-~~~~~~~r~~~~~a~~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~lvvDi 155 (334)
T PRK13927 78 TEKMLKYFIKKVHKN-FRPSPRVVICVP-SGITEVERRAVRESALGAGAREVYLIEEPMAAAIGAGLPVTEPTGSMVVDI 155 (334)
T ss_pred HHHHHHHHHHHHhhc-cCCCCcEEEEeC-CCCCHHHHHHHHHHHHHcCCCeeccCCChHHHHHHcCCcccCCCeEEEEEe
Confidence 999999999776666 55564 555555 55666666789999999999999999999999999986 56899999
Q ss_pred CCCceEEEEe-eCCeeccccceEecchHHHHHHHHHHHHHhcCCccccccHHHHHHHHHhhccccccCHHHHHHhhcCCC
Q 037845 158 GDGVSHTVPI-YEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSS 236 (314)
Q Consensus 158 G~~~t~i~pV-~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~ 236 (314)
|+++|+++++ .+|....+. .++||+++++.|.+++.++. .+ ....+.++++|+++|++..+.+... ... .
T Consensus 156 Gggttdvs~v~~~~~~~~~~---~~lGG~~id~~l~~~l~~~~-~~--~~~~~~ae~iK~~~~~~~~~~~~~~--~~~-~ 226 (334)
T PRK13927 156 GGGTTEVAVISLGGIVYSKS---VRVGGDKFDEAIINYVRRNY-NL--LIGERTAERIKIEIGSAYPGDEVLE--MEV-R 226 (334)
T ss_pred CCCeEEEEEEecCCeEeeCC---cCChHHHHHHHHHHHHHHHh-Cc--CcCHHHHHHHHHHhhccCCCCCCce--EEE-e
Confidence 9999999999 677665544 57999999999999987532 11 1245679999999998764321000 000 0
Q ss_pred CCcceEECCCCCeEeeCCeeeecccccCCCCcCCCCCCCHHHHHHHHHHhCChhHHHhhhcC-eEEecCCCCCCCCCC
Q 037845 237 SVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGN-IVLSGGSTMFPVLPT 313 (314)
Q Consensus 237 ~~~~~~~lp~~~~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~n-Ivl~GG~s~i~G~~e 313 (314)
.....+.+|+ .+.++.+++ .|++|+|. .++.+.|.+++++++.+.++.++++ |+||||+|++|||.+
T Consensus 227 ~~~~~~~~~~--~~~i~~~~~--~e~i~~~~------~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~ 294 (334)
T PRK13927 227 GRDLVTGLPK--TITISSNEI--REALQEPL------SAIVEAVKVALEQTPPELAADIVDRGIVLTGGGALLRGLDK 294 (334)
T ss_pred CcccCCCCCe--EEEECHHHH--HHHHHHHH------HHHHHHHHHHHHHCCchhhhhhhcCCEEEECchhhhhHHHH
Confidence 0000111221 345555555 37777763 3789999999999999998899875 999999999999875
No 18
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=100.00 E-value=7.3e-34 Score=255.36 Aligned_cols=275 Identities=16% Similarity=0.314 Sum_probs=211.2
Q ss_pred cEEEeCCCccEEEEEeCCCCCCccCCceeeecCCCCccccCCCccccccccccccc----CCceeeCcccCCccCCHHHH
Q 037845 9 PLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR----GILTLKYPIEHGIVSNWDDM 84 (314)
Q Consensus 9 ~vViD~Gs~~~k~G~ag~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~----~~~~~~~p~~~g~i~~~~~l 84 (314)
.+-||+||.++++ |.....=.+..||+++..... ...+++|++|.... ....+.+|+++|.|.|||..
T Consensus 6 ~~giDlGt~~~~i-~~~~~~~~~~~ps~va~~~~~-------~~~~~vG~~A~~~~~~~p~~~~~~~pi~~G~I~d~d~~ 77 (335)
T PRK13929 6 EIGIDLGTANILV-YSKNKGIILNEPSVVAVDTET-------KAVLAIGTEAKNMIGKTPGKIVAVRPMKDGVIADYDMT 77 (335)
T ss_pred eEEEEcccccEEE-EECCCcEEecCCcEEEEECCC-------CeEEEeCHHHHHhhhcCCCcEEEEecCCCCccCCHHHH
Confidence 5999999999998 553332234578998875432 13468999996543 55677899999999999999
Q ss_pred HHHHHHhccc---ccccCCCCCceEEeeCCCCChHHHHHHHHHHhhhCCCCeeeechhhhHhhhhcC-----CCeEEEEe
Q 037845 85 EKIWHHTFYN---ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASG-----RTTGIVLD 156 (314)
Q Consensus 85 e~~l~~~~~~---~l~~~~~~~~vll~~~~~~~~~~~~~~~~~lfe~~~~~~v~~~~~~~~a~~~~g-----~~t~lVVD 156 (314)
+.+|++++.+ .++..+...+++++.|+.++..+|+.+.+ +++.+|++.++++++|+||++++| ..+++|||
T Consensus 78 ~~~l~~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~l~~-a~~~ag~~~~~li~ep~Aaa~~~g~~~~~~~~~lvvD 156 (335)
T PRK13929 78 TDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISD-AVKNCGAKNVHLIEEPVAAAIGADLPVDEPVANVVVD 156 (335)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHHHHH-HHHHcCCCeeEeecCHHHHHHhcCCCcCCCceEEEEE
Confidence 9999999963 45666656789999999999999999988 999999999999999999999997 57899999
Q ss_pred cCCCceEEEEe-eCCeeccccceEecchHHHHHHHHHHHHHhcCCccccccHHHHHHHHHhhccccccCHHHHHHhhcCC
Q 037845 157 SGDGVSHTVPI-YEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSS 235 (314)
Q Consensus 157 iG~~~t~i~pV-~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~ 235 (314)
+|+++|+++++ .+|....+ ..++||++++++|.+++.+.. .+ ......++++|+++|++..+.+++.....
T Consensus 157 iG~gtt~v~vi~~~~~~~~~---~~~~GG~~id~~l~~~l~~~~-~~--~~~~~~AE~iK~~l~~~~~~~~~~~~~v~-- 228 (335)
T PRK13929 157 IGGGTTEVAIISFGGVVSCH---SIRIGGDQLDEDIVSFVRKKY-NL--LIGERTAEQVKMEIGYALIEHEPETMEVR-- 228 (335)
T ss_pred eCCCeEEEEEEEeCCEEEec---CcCCHHHHHHHHHHHHHHHHh-Cc--CcCHHHHHHHHHHHcCCCCCCCCceEEEe--
Confidence 99999999999 55444332 368999999999999987532 11 12457899999999997654321110000
Q ss_pred CCCcceEECCCCCeEeeCCeeee--cccccCCCCcCCCCCCCHHHHHHHHHHhCChhHHHhhhc-CeEEecCCCCCCCCC
Q 037845 236 SSVEKNYELPDGQIITIGAERFR--CPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYG-NIVLSGGSTMFPVLP 312 (314)
Q Consensus 236 ~~~~~~~~lp~~~~i~i~~~~~~--~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~-nIvl~GG~s~i~G~~ 312 (314)
.....+.+| ..+.++.+++. ++|.+|+ +.+.|.++++.++.+.+..+++ +|+||||+|++|||.
T Consensus 229 -g~~~~~~~p--~~i~i~~~~~~~~i~~~l~~----------i~~~i~~~L~~~~~~l~~~~~~~gIvLtGG~s~lpgl~ 295 (335)
T PRK13929 229 -GRDLVTGLP--KTITLESKEIQGAMRESLLH----------ILEAIRATLEDCPPELSGDIVDRGVILTGGGALLNGIK 295 (335)
T ss_pred -CCccCCCCC--eEEEEcHHHHHHHHHHHHHH----------HHHHHHHHHHhCCcccchhhcCCCEEEEchhhhhhhHH
Confidence 000112223 35667766665 5777775 9999999999999999999998 699999999999997
Q ss_pred C
Q 037845 313 T 313 (314)
Q Consensus 313 e 313 (314)
|
T Consensus 296 e 296 (335)
T PRK13929 296 E 296 (335)
T ss_pred H
Confidence 5
No 19
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=100.00 E-value=7.7e-34 Score=255.65 Aligned_cols=281 Identities=16% Similarity=0.201 Sum_probs=213.0
Q ss_pred EEEeCCCccEEEEEeCCCCCCccCCceeeecCCCCccccCCCcccccccccccc----cCCceeeCcccCCccCCHHHHH
Q 037845 10 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK----RGILTLKYPIEHGIVSNWDDME 85 (314)
Q Consensus 10 vViD~Gs~~~k~G~ag~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~----~~~~~~~~p~~~g~i~~~~~le 85 (314)
|-||+||.++++- ..+..-.+..||+++..+++. +.....+++|++|... .....+++|+++|.+.||+.++
T Consensus 5 ~giDlGt~~s~i~-~~~~~~~~~~psvv~~~~~~~---~~~~~~~~vG~~A~~~~~~~~~~~~~~~pi~~G~i~d~~~~~ 80 (333)
T TIGR00904 5 IGIDLGTANTLVY-VKGRGIVLNEPSVVAIRTDRD---AKTKSILAVGHEAKEMLGKTPGNIVAIRPMKDGVIADFEVTE 80 (333)
T ss_pred eEEecCcceEEEE-ECCCCEEEecCCEEEEecCCC---CCCCeEEEEhHHHHHhhhcCCCCEEEEecCCCCEEEcHHHHH
Confidence 8999999999984 434444567899998764421 0012357899998664 3567889999999999999999
Q ss_pred HHHHHhcccccccCCCCC-ceEEeeCCCCChHHHHHHHHHHhhhCCCCeeeechhhhHhhhhcCC-----CeEEEEecCC
Q 037845 86 KIWHHTFYNELRVAPEEH-PVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGR-----TTGIVLDSGD 159 (314)
Q Consensus 86 ~~l~~~~~~~l~~~~~~~-~vll~~~~~~~~~~~~~~~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~t~lVVDiG~ 159 (314)
.+|++++.+.+....... ++++++|+.++...|+. ++.+|+.++++.++++++|+||+|++|. .+++|||+|+
T Consensus 81 ~~~~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~-~~~~~~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~lVvDiG~ 159 (333)
T TIGR00904 81 KMIKYFIKQVHSRKSFFKPRIVICVPSGITPVERRA-VKESALSAGAREVYLIEEPMAAAIGAGLPVEEPTGSMVVDIGG 159 (333)
T ss_pred HHHHHHHHHHhcccccCCCcEEEEeCCCCCHHHHHH-HHHHHHHcCCCeEEEecCHHHHHHhcCCcccCCceEEEEEcCC
Confidence 999999977665322222 69999999999998886 7778999999999999999999999987 7899999999
Q ss_pred CceEEEEe-eCCeeccccceEecchHHHHHHHHHHHHHhcCCccccccHHHHHHHHHhhccccccCHHHHHHhhcCCCCC
Q 037845 160 GVSHTVPI-YEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSV 238 (314)
Q Consensus 160 ~~t~i~pV-~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~ 238 (314)
++|+++++ .+|....+. .++||+++++.|.+++.++. ......+.++++|+++|++..+..++.. ... ...
T Consensus 160 gttdvs~v~~~~~~~~~~---~~lGG~did~~l~~~l~~~~---~~~~~~~~ae~lK~~l~~~~~~~~~~~~-~~~-~~~ 231 (333)
T TIGR00904 160 GTTEVAVISLGGIVVSRS---IRVGGDEFDEAIINYIRRTY---NLLIGEQTAERIKIEIGSAYPLNDEPRK-MEV-RGR 231 (333)
T ss_pred CeEEEEEEEeCCEEecCC---ccchHHHHHHHHHHHHHHHh---cccCCHHHHHHHHHHHhccccccccccc-eee-cCc
Confidence 99999999 777665543 58999999999999887542 1223467899999999987654221110 000 001
Q ss_pred cceEECCCCCeEeeCCeeeecccccCCCCcCCCCCCCHHHHHHHHHHhCChhHHHhhhc-CeEEecCCCCCCCCCC
Q 037845 239 EKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYG-NIVLSGGSTMFPVLPT 313 (314)
Q Consensus 239 ~~~~~lp~~~~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~-nIvl~GG~s~i~G~~e 313 (314)
...+.+|++. .+..+ ..+|++|+|. .++.+.|.++++.++.+.+..+++ +|+||||+|++|||.|
T Consensus 232 ~~~~~~~~~~--~i~~~--~~~e~i~~~~------~~i~~~i~~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e 297 (333)
T TIGR00904 232 DLVTGLPRTI--EITSV--EVREALQEPV------NQIVEAVKRTLEKTPPELAADIVERGIVLTGGGALLRNLDK 297 (333)
T ss_pred cccCCCCeEE--EECHH--HHHHHHHHHH------HHHHHHHHHHHHhCCchhhhhhccCCEEEECcccchhhHHH
Confidence 1223455543 33322 5678888873 278999999999999999999997 7999999999999875
No 20
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=100.00 E-value=4.4e-32 Score=240.70 Aligned_cols=159 Identities=17% Similarity=0.326 Sum_probs=143.6
Q ss_pred CceeeCcccCCccCC----------HHHHHHHHHHhcccccccCCC---CCceEEeeCCCCChHHHHHHHHHHhhhCCCC
Q 037845 66 ILTLKYPIEHGIVSN----------WDDMEKIWHHTFYNELRVAPE---EHPVLLTEAPLNPKANREKMTQIMFETFNVP 132 (314)
Q Consensus 66 ~~~~~~p~~~g~i~~----------~~~le~~l~~~~~~~l~~~~~---~~~vll~~~~~~~~~~~~~~~~~lfe~~~~~ 132 (314)
.|.+.+|+++|.++- .+++.++|+|++.+.|+++++ ++.+|++.|....+...+.++.++|-+|+|.
T Consensus 178 ~y~l~~Pir~G~fNv~~~y~Slq~l~~dlt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F~ 257 (618)
T KOG0797|consen 178 PYCLYHPIRRGHFNVSPPYYSLQRLCEDLTAILDYALLEKLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGFN 257 (618)
T ss_pred cceeecccccceeccCCcchhHHHHHHHHHHHHHHHHHHhcCCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhccc
Confidence 578899999998744 256789999999999999875 6789999999988888888999999999999
Q ss_pred eeeechhhhHhhhhcCCCeEEEEecCCCceEEEEeeCCeeccccceEecchHHHHHHHHHHHHHhcCCccc-----cccH
Q 037845 133 AMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFT-----TTAE 207 (314)
Q Consensus 133 ~v~~~~~~~~a~~~~g~~t~lVVDiG~~~t~i~pV~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~-----~~~~ 207 (314)
++.++++++|++|++|.+++||||||++.|+|+||.||..++++...+++||++|++.|.++|.+.++++. ...+
T Consensus 258 ~~~v~QESlaatfGaGlss~CVVdiGAQkTsIaCVEdGvs~~ntri~L~YGGdDitr~f~~ll~rs~FPy~d~~v~~~~d 337 (618)
T KOG0797|consen 258 SAVVHQESLAATFGAGLSSACVVDIGAQKTSIACVEDGVSLPNTRIILPYGGDDITRCFLWLLRRSGFPYQDCDVLAPID 337 (618)
T ss_pred eEEEEhhhhHHHhcCCccceeEEEccCcceeEEEeecCccccCceEEeccCCchHHHHHHHHHHhcCCCccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999877553 4568
Q ss_pred HHHHHHHHhhccccccC
Q 037845 208 REIVRDMKEKLAYVALD 224 (314)
Q Consensus 208 ~~~~~~ik~~~~~~~~~ 224 (314)
+.+++.+|+++|.....
T Consensus 338 ~lLl~~LKe~Fc~l~~a 354 (618)
T KOG0797|consen 338 WLLLNQLKEKFCHLRAA 354 (618)
T ss_pred HHHHHHHHHHhccccHh
Confidence 89999999999987643
No 21
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=99.97 E-value=1e-30 Score=230.40 Aligned_cols=276 Identities=18% Similarity=0.276 Sum_probs=197.8
Q ss_pred CcEEEeCCCccEEEEEeCCCCCCccCCceeeecCCCCccccCCCccccccccccc----ccCCceeeCcccCCccCCHHH
Q 037845 8 QPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQS----KRGILTLKYPIEHGIVSNWDD 83 (314)
Q Consensus 8 ~~vViD~Gs~~~k~G~ag~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~----~~~~~~~~~p~~~g~i~~~~~ 83 (314)
.-+-||+||.++++ |..+..=.+..||+++..+.+. .-+.+|++|.. ......+.+|+++|.|.|++.
T Consensus 2 ~~igIDLGT~~t~i-~~~~~Giv~~epSvVA~~~~~~-------~i~avG~~A~~m~gktp~~i~~~~Pl~~GvI~D~~~ 73 (326)
T PF06723_consen 2 KDIGIDLGTSNTRI-YVKGKGIVLNEPSVVAYDKDTG-------KILAVGDEAKAMLGKTPDNIEVVRPLKDGVIADYEA 73 (326)
T ss_dssp SEEEEEE-SSEEEE-EETTTEEEEEEES-EEEETTT---------EEEESHHHHTTTTS-GTTEEEE-SEETTEESSHHH
T ss_pred CceEEecCcccEEE-EECCCCEEEecCcEEEEECCCC-------eEEEEhHHHHHHhhcCCCccEEEccccCCcccCHHH
Confidence 35789999999999 7766666667899999876532 45678999955 356778999999999999999
Q ss_pred HHHHHHHhcccccccCC-CCCceEEeeCCCCChHHHHHHHHHHhhhCCCCeeeechhhhHhhhhcCC-----CeEEEEec
Q 037845 84 MEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGR-----TTGIVLDS 157 (314)
Q Consensus 84 le~~l~~~~~~~l~~~~-~~~~vll~~~~~~~~~~~~~~~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~t~lVVDi 157 (314)
.+.++++++.+..+... ....++++.|.-.+...|+.+.+.+ ...|+..|+++++|+||++++|. .+.+|||+
T Consensus 74 ~~~~l~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~a~-~~aGa~~V~li~ep~AaAiGaGl~i~~~~g~miVDI 152 (326)
T PF06723_consen 74 AEEMLRYFLKKALGRRSFFRPRVVICVPSGITEVERRALIDAA-RQAGARKVYLIEEPIAAAIGAGLDIFEPRGSMIVDI 152 (326)
T ss_dssp HHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHHH-HHTT-SEEEEEEHHHHHHHHTT--TTSSS-EEEEEE
T ss_pred HHHHHHHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHHHH-HHcCCCEEEEecchHHHHhcCCCCCCCCCceEEEEE
Confidence 99999999977666433 3445777788888888888777666 56999999999999999999983 58899999
Q ss_pred CCCceEEEEeeCCeeccccceEecchHHHHHHHHHHHHHhcCCccccccHHHHHHHHHhhccccccCHHHHHHhhcCCCC
Q 037845 158 GDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSS 237 (314)
Q Consensus 158 G~~~t~i~pV~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~ 237 (314)
|+++|.|+.+..|.++.+ +.+++||+++++.+.+++++++ +......++|.+|.+++++....++. . .
T Consensus 153 G~GtTdiavislggiv~s--~si~~gG~~~DeaI~~~ir~~y---~l~Ig~~tAE~iK~~~g~~~~~~~~~--~-----~ 220 (326)
T PF06723_consen 153 GGGTTDIAVISLGGIVAS--RSIRIGGDDIDEAIIRYIREKY---NLLIGERTAEKIKIEIGSASPPEEEE--S-----M 220 (326)
T ss_dssp -SS-EEEEEEETTEEEEE--EEES-SHHHHHHHHHHHHHHHH---SEE--HHHHHHHHHHH-BSS--HHHH--E-----E
T ss_pred CCCeEEEEEEECCCEEEE--EEEEecCcchhHHHHHHHHHhh---CcccCHHHHHHHHHhcceeeccCCCc--e-----E
Confidence 999999999999988764 4689999999999999998754 33467899999999999886543332 0 0
Q ss_pred CcceEECCCCCe--EeeC-CeeeecccccCCCCcCCCCCCCHHHHHHHHHHhCChhHHHhhhcC-eEEecCCCCCCCCCC
Q 037845 238 VEKNYELPDGQI--ITIG-AERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGN-IVLSGGSTMFPVLPT 313 (314)
Q Consensus 238 ~~~~~~lp~~~~--i~i~-~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~n-Ivl~GG~s~i~G~~e 313 (314)
....-.+-+|.. +.+. .+-..+.+..+. .|.+.|.++++++|+++..++++| |+||||+|+|+||++
T Consensus 221 ~v~Grd~~tGlP~~~~i~~~ev~~ai~~~~~---------~I~~~i~~~Le~~pPel~~DI~~~GI~LtGGga~l~Gl~~ 291 (326)
T PF06723_consen 221 EVRGRDLITGLPKSIEITSSEVREAIEPPVD---------QIVEAIKEVLEKTPPELAADILENGIVLTGGGALLRGLDE 291 (326)
T ss_dssp EEEEEETTTTCEEEEEEEHHHHHHHHHHHHH---------HHHHHHHHHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHH
T ss_pred EEECccccCCCcEEEEEcHHHHHHHHHHHHH---------HHHHHHHHHHHhCCHHHHHHHHHCCEEEEChhhhhccHHH
Confidence 111223344433 3333 233334444443 699999999999999999998876 999999999999864
No 22
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=99.97 E-value=7.1e-30 Score=230.06 Aligned_cols=276 Identities=18% Similarity=0.263 Sum_probs=201.2
Q ss_pred EEEeCCCccEEEEEeCCCCCCccCCceeeecCCCCccccCCCcccccccccccc----cCCceeeCcccCCccCCHHHHH
Q 037845 10 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK----RGILTLKYPIEHGIVSNWDDME 85 (314)
Q Consensus 10 vViD~Gs~~~k~G~ag~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~----~~~~~~~~p~~~g~i~~~~~le 85 (314)
+-||+||.++++- ..+..-.+..||+++..... +.-+++|++|... .....+.+|+++|.|.||+..+
T Consensus 6 ~gIDlGt~~~~i~-~~~~~~v~~~psvv~~~~~~-------~~i~~vG~~A~~~~~~~p~~~~~~~pi~~G~i~d~~~~~ 77 (336)
T PRK13928 6 IGIDLGTANVLVY-VKGKGIVLNEPSVVAIDKNT-------NKVLAVGEEARRMVGRTPGNIVAIRPLRDGVIADYDVTE 77 (336)
T ss_pred eEEEcccccEEEE-ECCCCEEEccCCEEEEECCC-------CeEEEecHHHHHhhhcCCCCEEEEccCCCCeEecHHHHH
Confidence 8999999999994 44444445689998876432 1245789998654 2456678999999999999999
Q ss_pred HHHHHhcccccccC-CCCCc-eEEeeCCCCChHHHHHHHHHHhhhCCCCeeeechhhhHhhhhcCC-----CeEEEEecC
Q 037845 86 KIWHHTFYNELRVA-PEEHP-VLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGR-----TTGIVLDSG 158 (314)
Q Consensus 86 ~~l~~~~~~~l~~~-~~~~~-vll~~~~~~~~~~~~~~~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~t~lVVDiG 158 (314)
.+|++++.+ +... +..+| ++++.|.. ....+++.++.+++.+|++.+.++++|+||++++|. .+++|||+|
T Consensus 78 ~~l~~~~~~-~~~~~~~~~p~~vitvP~~-~~~~~r~~~~~a~~~ag~~~~~li~ep~Aaa~~~g~~~~~~~~~lVvDiG 155 (336)
T PRK13928 78 KMLKYFINK-ACGKRFFSKPRIMICIPTG-ITSVEKRAVREAAEQAGAKKVYLIEEPLAAAIGAGLDISQPSGNMVVDIG 155 (336)
T ss_pred HHHHHHHHH-HhccCCCCCCeEEEEeCCC-CCHHHHHHHHHHHHHcCCCceEecccHHHHHHHcCCcccCCCeEEEEEeC
Confidence 999999844 4333 45677 77777544 555666788999999999999999999999999986 789999999
Q ss_pred CCceEEEEeeCCeeccccceEecchHHHHHHHHHHHHHhcCCccccccHHHHHHHHHhhccccccCHHHHHHhhcCCCCC
Q 037845 159 DGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSV 238 (314)
Q Consensus 159 ~~~t~i~pV~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~ 238 (314)
+++|+|+++..|..+... ..++||+++++.|.+.+..+. . .......++++|.+++.+..+.+++. ..- ...
T Consensus 156 ggttdvsvv~~g~~~~~~--~~~lGG~did~~i~~~l~~~~-~--~~~~~~~ae~lK~~~~~~~~~~~~~~--~~v-~g~ 227 (336)
T PRK13928 156 GGTTDIAVLSLGGIVTSS--SIKVAGDKFDEAIIRYIRKKY-K--LLIGERTAEEIKIKIGTAFPGAREEE--MEI-RGR 227 (336)
T ss_pred CCeEEEEEEEeCCEEEeC--CcCCHHHHHHHHHHHHHHHHh-c--hhcCHHHHHHHHHHhcccccccCCcE--EEE-ecc
Confidence 999999999999776543 579999999999999987532 1 11235679999999887644311000 000 000
Q ss_pred cceEECCCCCeEeeCCeeeecccccCCCCcCCCCCCCHHHHHHHHHHhCChhHHHhhhc-CeEEecCCCCCCCCCC
Q 037845 239 EKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYG-NIVLSGGSTMFPVLPT 313 (314)
Q Consensus 239 ~~~~~lp~~~~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~-nIvl~GG~s~i~G~~e 313 (314)
...+.+|. .+.+..+++. |+++.+- ..+.+.|.++++.++.+.+...++ +|+||||+|++||+.|
T Consensus 228 ~~~~~~~~--~~~i~~~~~~--eii~~~~------~~i~~~i~~~l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e 293 (336)
T PRK13928 228 DLVTGLPK--TITVTSEEIR--EALKEPV------SAIVQAVKSVLERTPPELSADIIDRGIIMTGGGALLHGLDK 293 (336)
T ss_pred cccCCCce--EEEECHHHHH--HHHHHHH------HHHHHHHHHHHHhCCccccHhhcCCCEEEECcccchhhHHH
Confidence 00011121 2444444433 5555431 268889999999999888889998 7999999999999875
No 23
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=99.93 E-value=7.9e-26 Score=192.66 Aligned_cols=282 Identities=18% Similarity=0.262 Sum_probs=204.5
Q ss_pred CCcEEEeCCCccEEEEEeCCCCCCccCCceeeecCCCCccccCCCccccccccccc----ccCCceeeCcccCCccCCHH
Q 037845 7 IQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQS----KRGILTLKYPIEHGIVSNWD 82 (314)
Q Consensus 7 ~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~----~~~~~~~~~p~~~g~i~~~~ 82 (314)
...|-||+|+.++++ |.-+..-....||+++..+.. ....-..+|++|.. ..++....+|+++|+|.|++
T Consensus 6 s~diGIDLGTanTlV-~~k~kgIVl~ePSVVAi~~~~-----~~~~v~aVG~eAK~MlGrTP~ni~aiRPmkdGVIAd~~ 79 (342)
T COG1077 6 SNDIGIDLGTANTLV-YVKGKGIVLNEPSVVAIESEG-----KTKVVLAVGEEAKQMLGRTPGNIVAIRPMKDGVIADFE 79 (342)
T ss_pred cccceeeecccceEE-EEcCceEEecCceEEEEeecC-----CCceEEEehHHHHHHhccCCCCceEEeecCCcEeecHH
Confidence 458999999999999 776666667789999876631 12245689999954 45677889999999999999
Q ss_pred HHHHHHHHhcccccccCC-CCCc-eEEeeCCCCChHHHHHHHHHHhhhCCCCeeeechhhhHhhhhcC-----CCeEEEE
Q 037845 83 DMEKIWHHTFYNELRVAP-EEHP-VLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASG-----RTTGIVL 155 (314)
Q Consensus 83 ~le~~l~~~~~~~l~~~~-~~~~-vll~~~~~~~~~~~~~~~~~lfe~~~~~~v~~~~~~~~a~~~~g-----~~t~lVV 155 (314)
..+.+++|+..+..+-.. ...| ++++.|.-.+.-.|+ ..+-..++-+...|+++++|++|++++| .+.++||
T Consensus 80 ~te~ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VErr-Ai~ea~~~aGa~~V~lieEp~aAAIGaglpi~ep~G~mvv 158 (342)
T COG1077 80 VTELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERR-AIKEAAESAGAREVYLIEEPMAAAIGAGLPIMEPTGSMVV 158 (342)
T ss_pred HHHHHHHHHHHHhccCCCCCCCCcEEEEecCCccHHHHH-HHHHHHHhccCceEEEeccHHHHHhcCCCcccCCCCCEEE
Confidence 999999999855443333 3344 555555555555555 5555667799999999999999999998 4679999
Q ss_pred ecCCCceEEEEeeCCeeccccceEecchHHHHHHHHHHHHHhcCCccccccHHHHHHHHHhhccccccCHHHHHHhhcCC
Q 037845 156 DSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSS 235 (314)
Q Consensus 156 DiG~~~t~i~pV~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~ 235 (314)
|||.++|.|+.+..|-++... +..+||+.+++.+.++++++ |+.......++++|.+.+++.++.+.+....
T Consensus 159 DIGgGTTevaVISlggiv~~~--Sirv~GD~~De~Ii~yvr~~---~nl~IGe~taE~iK~eiG~a~~~~~~~~~~~--- 230 (342)
T COG1077 159 DIGGGTTEVAVISLGGIVSSS--SVRVGGDKMDEAIIVYVRKK---YNLLIGERTAEKIKIEIGSAYPEEEDEELEM--- 230 (342)
T ss_pred EeCCCceeEEEEEecCEEEEe--eEEEecchhhHHHHHHHHHH---hCeeecHHHHHHHHHHhcccccccCCcccee---
Confidence 999999999999888777654 46799999999999999874 3344567789999999998875422111000
Q ss_pred CCCcceEECCCC--CeEeeCCeeeecccccCCCCcCCCCCCCHHHHHHHHHHhCChhHHHhhhcC-eEEecCCCCCCCCC
Q 037845 236 SSVEKNYELPDG--QIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGN-IVLSGGSTMFPVLP 312 (314)
Q Consensus 236 ~~~~~~~~lp~~--~~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~n-Ivl~GG~s~i~G~~ 312 (314)
..+.-.+-.| +.+.+..+. +.|.|=+| ...|.+++...+..||+++-.+++++ |++|||+|++.||+
T Consensus 231 --eV~Grdl~~GlPk~i~i~s~e--v~eal~~~------v~~Iveair~~Le~tpPeL~~DI~ergivltGGGalLrglD 300 (342)
T COG1077 231 --EVRGRDLVTGLPKTITINSEE--IAEALEEP------LNGIVEAIRLVLEKTPPELAADIVERGIVLTGGGALLRGLD 300 (342)
T ss_pred --eEEeeecccCCCeeEEEcHHH--HHHHHHHH------HHHHHHHHHHHHhhCCchhcccHhhCceEEecchHHhcCch
Confidence 0000011111 122222221 12222111 12688999999999999999999999 99999999999997
Q ss_pred C
Q 037845 313 T 313 (314)
Q Consensus 313 e 313 (314)
+
T Consensus 301 ~ 301 (342)
T COG1077 301 R 301 (342)
T ss_pred H
Confidence 6
No 24
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=99.75 E-value=2.3e-17 Score=141.10 Aligned_cols=184 Identities=15% Similarity=0.121 Sum_probs=135.6
Q ss_pred eCcccCCccCCHHHHHHHHHHhcccc-cccCCCCCceEEeeCCCCChHHHHHHHHHHhhhCCCCeeeechhhhHhhhhcC
Q 037845 70 KYPIEHGIVSNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASG 148 (314)
Q Consensus 70 ~~p~~~g~i~~~~~le~~l~~~~~~~-l~~~~~~~~vll~~~~~~~~~~~~~~~~~lfe~~~~~~v~~~~~~~~a~~~~g 148 (314)
..|+.+|.|.|++....+++++.... -.....-..++++.|...+..+|+. ..-+++..|+.-+.++.++++++.+++
T Consensus 28 ~~~~~~g~I~d~~~~~~~l~~l~~~a~~~~g~~~~~vvisVP~~~~~~~r~a-~~~a~~~aGl~~~~li~ep~Aaa~~~~ 106 (239)
T TIGR02529 28 ADVVRDGIVVDFLGAVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKV-IVNVIESAGIEVLHVLDEPTAAAAVLQ 106 (239)
T ss_pred cccccCCeEEEhHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCcccHHH-HHHHHHHcCCceEEEeehHHHHHHHhc
Confidence 46899999999999999999998421 1122234578999998888888875 445667789999999999999999988
Q ss_pred CCeEEEEecCCCceEEEEeeCCeeccccceEecchHHHHHHHHHHHHHhcCCccccccHHHHHHHHHhhccccccCHHHH
Q 037845 149 RTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQE 228 (314)
Q Consensus 149 ~~t~lVVDiG~~~t~i~pV~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~ 228 (314)
....+|||+|+++|+++.+.+|.++. ....++||+++++.+.+.+.. +...+|.+|..... .++
T Consensus 107 ~~~~~vvDiGggtt~i~i~~~G~i~~--~~~~~~GG~~it~~Ia~~~~i---------~~~~AE~~K~~~~~-----~~~ 170 (239)
T TIGR02529 107 IKNGAVVDVGGGTTGISILKKGKVIY--SADEPTGGTHMSLVLAGAYGI---------SFEEAEEYKRGHKD-----EEE 170 (239)
T ss_pred CCCcEEEEeCCCcEEEEEEECCeEEE--EEeeecchHHHHHHHHHHhCC---------CHHHHHHHHHhcCC-----HHH
Confidence 87789999999999999999998775 346789999999998766542 45778888876442 111
Q ss_pred HHhhcCCCCCcceEECCCCCeEeeCCeeeecccccCCCCcCCCCCCCHHHHHHHHHHhCChhHHHhhhcCeEEecCCCCC
Q 037845 229 LETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMF 308 (314)
Q Consensus 229 ~~~~~~~~~~~~~~~lp~~~~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~nIvl~GG~s~i 308 (314)
.. ...+.+++ .+.+.|.+++++.++ +.|+||||+|++
T Consensus 171 ~~---------------------------~~i~~~~~---------~i~~~i~~~l~~~~~-------~~v~LtGG~a~i 207 (239)
T TIGR02529 171 IF---------------------------PVVKPVYQ---------KMASIVKRHIEGQGV-------KDLYLVGGACSF 207 (239)
T ss_pred HH---------------------------HHHHHHHH---------HHHHHHHHHHHhCCC-------CEEEEECchhcc
Confidence 10 00011111 355556666654443 479999999999
Q ss_pred CCCCC
Q 037845 309 PVLPT 313 (314)
Q Consensus 309 ~G~~e 313 (314)
||+.|
T Consensus 208 pgl~e 212 (239)
T TIGR02529 208 SGFAD 212 (239)
T ss_pred hhHHH
Confidence 99875
No 25
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.67 E-value=3.3e-15 Score=130.02 Aligned_cols=167 Identities=14% Similarity=0.090 Sum_probs=124.7
Q ss_pred CCCcEEEeCCCccEEEEEeCCCCCCccCCceeeecCCCCccccCCCcccccccccccccCCceeeCcccCCccCCHHHHH
Q 037845 6 DIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDME 85 (314)
Q Consensus 6 ~~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~~~~~le 85 (314)
....++||+||.++|+=.+ +..+. .++ +++ ..+.++++|.+.|++...
T Consensus 23 ~~~~~~iDiGSssi~~vv~-~~~~~-----~~~-----------------~~~---------~~~~~vr~G~i~di~~a~ 70 (267)
T PRK15080 23 SPLKVGVDLGTANIVLAVL-DEDGQ-----PVA-----------------GAL---------EWADVVRDGIVVDFIGAV 70 (267)
T ss_pred CCEEEEEEccCceEEEEEE-cCCCC-----EEE-----------------EEe---------ccccccCCCEEeeHHHHH
Confidence 4456999999999997543 43332 111 111 235678999999999999
Q ss_pred HHHHHhccc---ccccCCCCCceEEeeCCCCChHHHHHHHHHHhhhCCCCeeeechhhhHhhhhcCCCeEEEEecCCCce
Q 037845 86 KIWHHTFYN---ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVS 162 (314)
Q Consensus 86 ~~l~~~~~~---~l~~~~~~~~vll~~~~~~~~~~~~~~~~~lfe~~~~~~v~~~~~~~~a~~~~g~~t~lVVDiG~~~t 162 (314)
+.++++... .++.. -..++++.|...+...+..+. -+.+..|++-..++.++.+++.+++...++|||+|+++|
T Consensus 71 ~~i~~~~~~ae~~~g~~--i~~v~~~vp~~~~~~~~~~~~-~~~~~aGl~~~~ii~e~~A~a~~~~~~~~~vvDIGggtt 147 (267)
T PRK15080 71 TIVRRLKATLEEKLGRE--LTHAATAIPPGTSEGDPRAII-NVVESAGLEVTHVLDEPTAAAAVLGIDNGAVVDIGGGTT 147 (267)
T ss_pred HHHHHHHHHHHHHhCCC--cCeEEEEeCCCCCchhHHHHH-HHHHHcCCceEEEechHHHHHHHhCCCCcEEEEeCCCcE
Confidence 998888742 23332 345677778777666666555 677889999888999999999988877789999999999
Q ss_pred EEEEeeCCeeccccceEecchHHHHHHHHHHHHHhcCCccccccHHHHHHHHHhhc
Q 037845 163 HTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKL 218 (314)
Q Consensus 163 ~i~pV~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~ 218 (314)
+++.+.+|.++.. ...++||+++++.+.+.+.. +.+.+|.+|...
T Consensus 148 ~i~v~~~g~~~~~--~~~~~GG~~it~~Ia~~l~i---------~~~eAE~lK~~~ 192 (267)
T PRK15080 148 GISILKDGKVVYS--ADEPTGGTHMSLVLAGAYGI---------SFEEAEQYKRDP 192 (267)
T ss_pred EEEEEECCeEEEE--ecccCchHHHHHHHHHHhCC---------CHHHHHHHHhcc
Confidence 9999999987754 36799999999999876642 456677777653
No 26
>CHL00094 dnaK heat shock protein 70
Probab=99.55 E-value=6.3e-14 Score=135.92 Aligned_cols=94 Identities=15% Similarity=0.149 Sum_probs=74.5
Q ss_pred CceEEeeCCCCChHHHHHHHHHHhhhCCCCeeeechhhhHhhhhcCC-----CeEEEEecCCCceEEEEeeCCeec---c
Q 037845 103 HPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIYEGYAL---P 174 (314)
Q Consensus 103 ~~vll~~~~~~~~~~~~~~~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~t~lVVDiG~~~t~i~pV~~g~~~---~ 174 (314)
..++++.|.+++..+|+.+. -+.+..|+..+.++++|.||++++|. .+.+|+|+|+++++|+.+..+... .
T Consensus 136 ~~~VItVPa~f~~~qR~a~~-~Aa~~AGl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~~~~~vl 214 (621)
T CHL00094 136 TQAVITVPAYFNDSQRQATK-DAGKIAGLEVLRIINEPTAASLAYGLDKKNNETILVFDLGGGTFDVSILEVGDGVFEVL 214 (621)
T ss_pred CeEEEEECCCCCHHHHHHHH-HHHHHcCCceEEEeccHHHHHHHhccccCCCCEEEEEEcCCCeEEEEEEEEcCCEEEEE
Confidence 46888999999988887554 45678899999999999999998863 478999999999999887544221 2
Q ss_pred ccceEecchHHHHHHHHHHHHHh
Q 037845 175 HAILRLDLAGRDLTDALMKILTE 197 (314)
Q Consensus 175 ~~~~~~~~GG~~i~~~l~~~l~~ 197 (314)
.+....++||+++++.|.+++.+
T Consensus 215 a~~gd~~lGG~d~D~~l~~~~~~ 237 (621)
T CHL00094 215 STSGDTHLGGDDFDKKIVNWLIK 237 (621)
T ss_pred EEecCCCcChHHHHHHHHHHHHH
Confidence 22334689999999999987754
No 27
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=99.54 E-value=5.4e-14 Score=135.66 Aligned_cols=178 Identities=19% Similarity=0.168 Sum_probs=115.5
Q ss_pred cEEEeCCCccEEEEEeCCCCCCc--------cCCceeeecCCCCccccCCCcccccccccccc------cCCce------
Q 037845 9 PLVCDNGTGMVKAGFAGDDAPRA--------VFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK------RGILT------ 68 (314)
Q Consensus 9 ~vViD~Gs~~~k~G~ag~~~P~~--------~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~------~~~~~------ 68 (314)
+|-||+||.+..+++..+..|.+ .+||+++...+ ...++|+.|... +..+.
T Consensus 1 ~iGIDlGTtns~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~---------~~~~vG~~A~~~~~~~p~~ti~~~Kr~iG 71 (599)
T TIGR01991 1 AVGIDLGTTNSLVASVRSGVPEVLPDAEGRVLLPSVVRYLKD---------GGVEVGKEALAAAAEDPKNTISSVKRLMG 71 (599)
T ss_pred CEEEEEccccEEEEEEECCEEEEEECCCCCcccCeEEEEeCC---------CCEEecHHHHHhhhhChhhhHHHHHHHhC
Confidence 47899999999999876554442 36666665332 245677766321 00000
Q ss_pred ---------eeCccc--------------CCccCCHHHHHHHHHHhcc---cccccCCCCCceEEeeCCCCChHHHHHHH
Q 037845 69 ---------LKYPIE--------------HGIVSNWDDMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANREKMT 122 (314)
Q Consensus 69 ---------~~~p~~--------------~g~i~~~~~le~~l~~~~~---~~l~~~~~~~~vll~~~~~~~~~~~~~~~ 122 (314)
-.+|+. .+.+.-.+....+|+++.. +.++. .-..++++.|.+++..+|+. +
T Consensus 72 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ei~a~iL~~lk~~a~~~lg~--~v~~~VItVPa~f~~~qR~a-~ 148 (599)
T TIGR01991 72 RSIEDIKTFSILPYRFVDGPGEMVRLRTVQGTVTPVEVSAEILKKLKQRAEESLGG--DLVGAVITVPAYFDDAQRQA-T 148 (599)
T ss_pred CCccchhhcccCCEEEEEcCCCceEEEeCCCEEcHHHHHHHHHHHHHHHHHHHhCC--CcceEEEEECCCCCHHHHHH-H
Confidence 011221 1222222333445554432 22332 23569999999999999985 5
Q ss_pred HHHhhhCCCCeeeechhhhHhhhhcC-----CCeEEEEecCCCceEEEEee--CCee-ccccceEecchHHHHHHHHHHH
Q 037845 123 QIMFETFNVPAMYVAIQAVLSLYASG-----RTTGIVLDSGDGVSHTVPIY--EGYA-LPHAILRLDLAGRDLTDALMKI 194 (314)
Q Consensus 123 ~~lfe~~~~~~v~~~~~~~~a~~~~g-----~~t~lVVDiG~~~t~i~pV~--~g~~-~~~~~~~~~~GG~~i~~~l~~~ 194 (314)
+-+.+..|++-+.++++|.||+++++ ..+-+|+|+|+++++|+.+. +|.. +..+.....+||+++++.|.++
T Consensus 149 ~~Aa~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGgGT~DvSi~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~ 228 (599)
T TIGR01991 149 KDAARLAGLNVLRLLNEPTAAAVAYGLDKASEGIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHALAKW 228 (599)
T ss_pred HHHHHHcCCCceEEecCHHHHHHHHhhccCCCCEEEEEEcCCCeEEEEEEEEcCCeEEEEEEcCCCCCCHHHHHHHHHHH
Confidence 55578899999999999999998875 35789999999999998764 3422 1222234589999999999998
Q ss_pred HHhc
Q 037845 195 LTER 198 (314)
Q Consensus 195 l~~~ 198 (314)
+.++
T Consensus 229 l~~~ 232 (599)
T TIGR01991 229 ILKQ 232 (599)
T ss_pred HHHh
Confidence 8653
No 28
>PLN03184 chloroplast Hsp70; Provisional
Probab=99.53 E-value=1.1e-13 Score=134.78 Aligned_cols=94 Identities=16% Similarity=0.152 Sum_probs=74.9
Q ss_pred CceEEeeCCCCChHHHHHHHHHHhhhCCCCeeeechhhhHhhhhcCC-----CeEEEEecCCCceEEEEeeCCee---cc
Q 037845 103 HPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIYEGYA---LP 174 (314)
Q Consensus 103 ~~vll~~~~~~~~~~~~~~~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~t~lVVDiG~~~t~i~pV~~g~~---~~ 174 (314)
..++|+.|.+++..+|+. +.-+.+..|+..+.++++|.||++++|. .+-+|+|+|+++++|+.+.-+.. +.
T Consensus 173 ~~~VITVPa~f~~~qR~a-~~~Aa~~AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~DvSi~~~~~~~~eVl 251 (673)
T PLN03184 173 TKAVITVPAYFNDSQRTA-TKDAGRIAGLEVLRIINEPTAASLAYGFEKKSNETILVFDLGGGTFDVSVLEVGDGVFEVL 251 (673)
T ss_pred CeEEEEECCCCCHHHHHH-HHHHHHHCCCCeEEEeCcHHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEEecCCEEEEE
Confidence 579999999999988875 5566788999999999999999998863 47899999999999987643321 12
Q ss_pred ccceEecchHHHHHHHHHHHHHh
Q 037845 175 HAILRLDLAGRDLTDALMKILTE 197 (314)
Q Consensus 175 ~~~~~~~~GG~~i~~~l~~~l~~ 197 (314)
.+.....+||+++++.|.+++..
T Consensus 252 a~~gd~~LGG~dfD~~L~~~~~~ 274 (673)
T PLN03184 252 STSGDTHLGGDDFDKRIVDWLAS 274 (673)
T ss_pred EecCCCccCHHHHHHHHHHHHHH
Confidence 22234689999999999988764
No 29
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=99.52 E-value=1e-13 Score=134.97 Aligned_cols=95 Identities=16% Similarity=0.133 Sum_probs=76.6
Q ss_pred CCceEEeeCCCCChHHHHHHHHHHhhhCCCCeeeechhhhHhhhhcCC-----CeEEEEecCCCceEEEEee--CCeec-
Q 037845 102 EHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIY--EGYAL- 173 (314)
Q Consensus 102 ~~~vll~~~~~~~~~~~~~~~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~t~lVVDiG~~~t~i~pV~--~g~~~- 173 (314)
-..++++.|.+++..+|+. +.-+.+..|++.+.++++|.||++++|. .+-+|+|+|+++++|+.+. +|...
T Consensus 174 v~~~VITVPa~f~~~qR~a-~~~Aa~~AGl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~g~~~v 252 (663)
T PTZ00400 174 VKQAVITVPAYFNDSQRQA-TKDAGKIAGLDVLRIINEPTAAALAFGMDKNDGKTIAVYDLGGGTFDISILEILGGVFEV 252 (663)
T ss_pred CceEEEEECCCCCHHHHHH-HHHHHHHcCCceEEEeCchHHHHHHhccccCCCcEEEEEeCCCCeEEEEEEEecCCeeEE
Confidence 3579999999999998884 4566778999999999999999999873 4789999999999998764 55332
Q ss_pred cccceEecchHHHHHHHHHHHHHh
Q 037845 174 PHAILRLDLAGRDLTDALMKILTE 197 (314)
Q Consensus 174 ~~~~~~~~~GG~~i~~~l~~~l~~ 197 (314)
..+.....+||+++++.|.+++..
T Consensus 253 ~a~~gd~~LGG~d~D~~l~~~l~~ 276 (663)
T PTZ00400 253 KATNGNTSLGGEDFDQRILNYLIA 276 (663)
T ss_pred EecccCCCcCHHHHHHHHHHHHHH
Confidence 223334689999999999988764
No 30
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=99.50 E-value=2.5e-13 Score=131.57 Aligned_cols=94 Identities=19% Similarity=0.113 Sum_probs=76.1
Q ss_pred CceEEeeCCCCChHHHHHHHHHHhhhCCCCeeeechhhhHhhhhcCC-----CeEEEEecCCCceEEEEee--CCeec-c
Q 037845 103 HPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIY--EGYAL-P 174 (314)
Q Consensus 103 ~~vll~~~~~~~~~~~~~~~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~t~lVVDiG~~~t~i~pV~--~g~~~-~ 174 (314)
..++++.|.+++..+|+ .++-+.+..|+.-+.++++|.||++++|. .+-+|+|+|+++++|+.+. +|... .
T Consensus 161 ~~aVITVPayF~~~qR~-at~~Aa~~AGl~v~rlInEPtAAAlayg~~~~~~~~vlV~DlGGGT~DvSil~~~~g~~~V~ 239 (657)
T PTZ00186 161 SNAVVTCPAYFNDAQRQ-ATKDAGTIAGLNVIRVVNEPTAAALAYGMDKTKDSLIAVYDLGGGTFDISVLEIAGGVFEVK 239 (657)
T ss_pred ceEEEEECCCCChHHHH-HHHHHHHHcCCCeEEEEcChHHHHHHHhccCCCCCEEEEEECCCCeEEEEEEEEeCCEEEEE
Confidence 46899999999998888 56667788999999999999999998873 5789999999999998775 55432 2
Q ss_pred ccceEecchHHHHHHHHHHHHHh
Q 037845 175 HAILRLDLAGRDLTDALMKILTE 197 (314)
Q Consensus 175 ~~~~~~~~GG~~i~~~l~~~l~~ 197 (314)
.+.....+||+++++.|.+++.+
T Consensus 240 at~Gd~~LGG~DfD~~l~~~~~~ 262 (657)
T PTZ00186 240 ATNGDTHLGGEDFDLALSDYILE 262 (657)
T ss_pred EecCCCCCCchhHHHHHHHHHHH
Confidence 23335689999999999887754
No 31
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=99.50 E-value=3.3e-13 Score=129.63 Aligned_cols=175 Identities=16% Similarity=0.213 Sum_probs=113.1
Q ss_pred CceEEeeCCCCChHHHHHHHHHHhhhCCCCeeeechhhhHhhhhcCC-----CeEEEEecCCCceEEEEee--CCee-cc
Q 037845 103 HPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIY--EGYA-LP 174 (314)
Q Consensus 103 ~~vll~~~~~~~~~~~~~~~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~t~lVVDiG~~~t~i~pV~--~g~~-~~ 174 (314)
..++++.|.+++..+|+ .++.+.+..|++-+.++++|.||++++|. .+.+|+|+|+++++|+.+. +|.. +.
T Consensus 142 ~~aVITVPa~f~~~qR~-a~~~Aa~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSi~~~~~~~~~V~ 220 (595)
T PRK01433 142 TKAVITVPAHFNDAARG-EVMLAAKIAGFEVLRLIAEPTAAAYAYGLNKNQKGCYLVYDLGGGTFDVSILNIQEGIFQVI 220 (595)
T ss_pred ceEEEEECCCCCHHHHH-HHHHHHHHcCCCEEEEecCcHHHHHHHhcccCCCCEEEEEECCCCcEEEEEEEEeCCeEEEE
Confidence 56899999999998888 55556788999999999999999999863 4579999999999988764 4422 12
Q ss_pred ccceEecchHHHHHHHHHHHHHhcCCccccc-cHHHHHHHHHhhccccccCHHHHHHhhcCCCCCcceEECCCCCeEeeC
Q 037845 175 HAILRLDLAGRDLTDALMKILTERGYMFTTT-AEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIG 253 (314)
Q Consensus 175 ~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~-~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~i~i~ 253 (314)
.+.....+||+++++.|.+++..+.. .... .....++..|+.++.-. .+.. ..+.+.
T Consensus 221 at~gd~~lGG~d~D~~l~~~~~~~~~-~~~~~~~~~~~ekaK~~LS~~~------------------~~~~---~~~~it 278 (595)
T PRK01433 221 ATNGDNMLGGNDIDVVITQYLCNKFD-LPNSIDTLQLAKKAKETLTYKD------------------SFNN---DNISIN 278 (595)
T ss_pred EEcCCcccChHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCCc------------------cccc---ceEEEc
Confidence 22234579999999999998876421 1111 11223455555433210 0111 134444
Q ss_pred Ceee-ecccccCCCCcCCCCCCCHHHHHHHHHHhCChhHHHhhhcCeEEecCCCCCCCCCC
Q 037845 254 AERF-RCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPVLPT 313 (314)
Q Consensus 254 ~~~~-~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~nIvl~GG~s~i~G~~e 313 (314)
.+.| ...+.+|+ .+...|.++++... ..-.+.|+|+||+|+||.+.+
T Consensus 279 r~efe~l~~~l~~---------~~~~~i~~~L~~a~----~~~Id~ViLvGGssriP~v~~ 326 (595)
T PRK01433 279 KQTLEQLILPLVE---------RTINIAQECLEQAG----NPNIDGVILVGGATRIPLIKD 326 (595)
T ss_pred HHHHHHHHHHHHH---------HHHHHHHHHHhhcC----cccCcEEEEECCcccChhHHH
Confidence 3332 22233333 45556666665543 123588999999999998764
No 32
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=99.50 E-value=1.2e-13 Score=133.70 Aligned_cols=94 Identities=15% Similarity=0.182 Sum_probs=73.5
Q ss_pred CceEEeeCCCCChHHHHHHHHHHhhhCCCCeeeechhhhHhhhhcC------CCeEEEEecCCCceEEEEee--CCee-c
Q 037845 103 HPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASG------RTTGIVLDSGDGVSHTVPIY--EGYA-L 173 (314)
Q Consensus 103 ~~vll~~~~~~~~~~~~~~~~~lfe~~~~~~v~~~~~~~~a~~~~g------~~t~lVVDiG~~~t~i~pV~--~g~~-~ 173 (314)
..++++.|.+++..+|+.+. -+.+..|++-+.++++|.||++++| ..+-+|+|+|+++++|+.+. +|.. +
T Consensus 131 ~~~VItVPa~f~~~qR~a~~-~Aa~~AGl~v~~li~EptAAAl~y~~~~~~~~~~vlV~D~Gggt~dvsv~~~~~~~~~v 209 (595)
T TIGR02350 131 TEAVITVPAYFNDAQRQATK-DAGKIAGLEVLRIINEPTAAALAYGLDKSKKDEKILVFDLGGGTFDVSILEIGDGVFEV 209 (595)
T ss_pred CeEEEEECCCCCHHHHHHHH-HHHHHcCCceEEEecchHHHHHHHhhcccCCCcEEEEEECCCCeEEEEEEEecCCeEEE
Confidence 46899999999999888554 4677889999999999999999875 35789999999999998764 3322 1
Q ss_pred cccceEecchHHHHHHHHHHHHHh
Q 037845 174 PHAILRLDLAGRDLTDALMKILTE 197 (314)
Q Consensus 174 ~~~~~~~~~GG~~i~~~l~~~l~~ 197 (314)
..+.....+||.++++.|.+++..
T Consensus 210 ~~~~gd~~lGG~d~D~~l~~~~~~ 233 (595)
T TIGR02350 210 LSTAGDTHLGGDDFDQRIIDWLAD 233 (595)
T ss_pred EEecCCcccCchhHHHHHHHHHHH
Confidence 222234579999999999887754
No 33
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=99.49 E-value=3.2e-13 Score=130.68 Aligned_cols=95 Identities=17% Similarity=0.122 Sum_probs=75.4
Q ss_pred CceEEeeCCCCChHHHHHHHHHHhhhCCCCeeeechhhhHhhhhcCC-----CeEEEEecCCCceEEEEee--CCee-cc
Q 037845 103 HPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIY--EGYA-LP 174 (314)
Q Consensus 103 ~~vll~~~~~~~~~~~~~~~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~t~lVVDiG~~~t~i~pV~--~g~~-~~ 174 (314)
..++++.|.+++..+|+. ++-+.+..|++-+.++++|.||+++++. .+-+|+|+|+++++|+.+. +|.. +.
T Consensus 150 ~~~VITVPa~f~~~qR~a-~~~Aa~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSv~~~~~~~~evl 228 (616)
T PRK05183 150 DGAVITVPAYFDDAQRQA-TKDAARLAGLNVLRLLNEPTAAAIAYGLDSGQEGVIAVYDLGGGTFDISILRLSKGVFEVL 228 (616)
T ss_pred ceEEEEECCCCCHHHHHH-HHHHHHHcCCCeEEEecchHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEEeeCCEEEEE
Confidence 468999999999999884 4666888999999999999999988752 4679999999999998764 3322 12
Q ss_pred ccceEecchHHHHHHHHHHHHHhc
Q 037845 175 HAILRLDLAGRDLTDALMKILTER 198 (314)
Q Consensus 175 ~~~~~~~~GG~~i~~~l~~~l~~~ 198 (314)
.+.....+||.++++.|.+++.++
T Consensus 229 at~gd~~lGG~d~D~~l~~~~~~~ 252 (616)
T PRK05183 229 ATGGDSALGGDDFDHLLADWILEQ 252 (616)
T ss_pred EecCCCCcCHHHHHHHHHHHHHHH
Confidence 223346799999999999888654
No 34
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=99.48 E-value=2e-13 Score=132.80 Aligned_cols=94 Identities=15% Similarity=0.152 Sum_probs=74.5
Q ss_pred CceEEeeCCCCChHHHHHHHHHHhhhCCCCeeeechhhhHhhhhcC-----CCeEEEEecCCCceEEEEeeCCe--e-cc
Q 037845 103 HPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASG-----RTTGIVLDSGDGVSHTVPIYEGY--A-LP 174 (314)
Q Consensus 103 ~~vll~~~~~~~~~~~~~~~~~lfe~~~~~~v~~~~~~~~a~~~~g-----~~t~lVVDiG~~~t~i~pV~~g~--~-~~ 174 (314)
..++++.|.+++..+|+.+ .-+.+..|++-+.++++|.||++++| ..+-+|+|+|+++++|+.+.-+. . +.
T Consensus 134 ~~~VItVPa~f~~~qR~a~-~~Aa~~AGl~v~~li~EptAAAl~y~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~vl 212 (627)
T PRK00290 134 TEAVITVPAYFNDAQRQAT-KDAGKIAGLEVLRIINEPTAAALAYGLDKKGDEKILVYDLGGGTFDVSILEIGDGVFEVL 212 (627)
T ss_pred ceEEEEECCCCCHHHHHHH-HHHHHHcCCceEEEecchHHHHHHhhhccCCCCEEEEEECCCCeEEEEEEEEeCCeEEEE
Confidence 4689999999999988855 56667899999999999999999886 36799999999999998764331 1 12
Q ss_pred ccceEecchHHHHHHHHHHHHHh
Q 037845 175 HAILRLDLAGRDLTDALMKILTE 197 (314)
Q Consensus 175 ~~~~~~~~GG~~i~~~l~~~l~~ 197 (314)
.+....++||.++++.|.+++.+
T Consensus 213 a~~gd~~lGG~d~D~~l~~~~~~ 235 (627)
T PRK00290 213 STNGDTHLGGDDFDQRIIDYLAD 235 (627)
T ss_pred EecCCCCcChHHHHHHHHHHHHH
Confidence 22234689999999999987754
No 35
>PRK13411 molecular chaperone DnaK; Provisional
Probab=99.48 E-value=4.5e-13 Score=130.44 Aligned_cols=94 Identities=16% Similarity=0.186 Sum_probs=73.9
Q ss_pred CceEEeeCCCCChHHHHHHHHHHhhhCCCCeeeechhhhHhhhhcCC------CeEEEEecCCCceEEEEee--CCee-c
Q 037845 103 HPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGR------TTGIVLDSGDGVSHTVPIY--EGYA-L 173 (314)
Q Consensus 103 ~~vll~~~~~~~~~~~~~~~~~lfe~~~~~~v~~~~~~~~a~~~~g~------~t~lVVDiG~~~t~i~pV~--~g~~-~ 173 (314)
..++++.|.+++..+|+.+ +-+.+..|++-+.++++|.||++++|. .+-+|+|+|+++++|+.+. +|.. +
T Consensus 134 ~~~VITVPa~f~~~qR~a~-~~Aa~~AGl~v~~li~EPtAAAl~y~~~~~~~~~~vlV~DlGgGT~dvsi~~~~~~~~~V 212 (653)
T PRK13411 134 TQAVITVPAYFTDAQRQAT-KDAGTIAGLEVLRIINEPTAAALAYGLDKQDQEQLILVFDLGGGTFDVSILQLGDGVFEV 212 (653)
T ss_pred ceEEEEECCCCCcHHHHHH-HHHHHHcCCCeEEEecchHHHHHHhcccccCCCCEEEEEEcCCCeEEEEEEEEeCCEEEE
Confidence 5689999999999988854 556778999999999999999998863 4589999999999988653 2322 2
Q ss_pred cccceEecchHHHHHHHHHHHHHh
Q 037845 174 PHAILRLDLAGRDLTDALMKILTE 197 (314)
Q Consensus 174 ~~~~~~~~~GG~~i~~~l~~~l~~ 197 (314)
..+.....+||+++++.|.+++.+
T Consensus 213 ~at~gd~~LGG~dfD~~l~~~l~~ 236 (653)
T PRK13411 213 KATAGNNHLGGDDFDNCIVDWLVE 236 (653)
T ss_pred EEEecCCCcCHHHHHHHHHHHHHH
Confidence 222234579999999999888764
No 36
>PRK13410 molecular chaperone DnaK; Provisional
Probab=99.48 E-value=2.4e-13 Score=132.17 Aligned_cols=94 Identities=17% Similarity=0.179 Sum_probs=74.6
Q ss_pred CceEEeeCCCCChHHHHHHHHHHhhhCCCCeeeechhhhHhhhhcC-----CCeEEEEecCCCceEEEEee--CCee-cc
Q 037845 103 HPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASG-----RTTGIVLDSGDGVSHTVPIY--EGYA-LP 174 (314)
Q Consensus 103 ~~vll~~~~~~~~~~~~~~~~~lfe~~~~~~v~~~~~~~~a~~~~g-----~~t~lVVDiG~~~t~i~pV~--~g~~-~~ 174 (314)
..++|+.|.+++..+|+. ++-+.+..|++.+.++++|.||++++| ..+-+|+|+|+++++|+.+. +|.. +.
T Consensus 136 ~~~VITVPa~f~~~qR~a-~~~Aa~~AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~Dvsv~~~~~g~~~V~ 214 (668)
T PRK13410 136 TGAVITVPAYFNDSQRQA-TRDAGRIAGLEVERILNEPTAAALAYGLDRSSSQTVLVFDLGGGTFDVSLLEVGNGVFEVK 214 (668)
T ss_pred ceEEEEECCCCCHHHHHH-HHHHHHHcCCCeEEEecchHHHHHHhccccCCCCEEEEEECCCCeEEEEEEEEcCCeEEEE
Confidence 468999999999999985 555568899999999999999999886 35789999999999998764 3322 22
Q ss_pred ccceEecchHHHHHHHHHHHHHh
Q 037845 175 HAILRLDLAGRDLTDALMKILTE 197 (314)
Q Consensus 175 ~~~~~~~~GG~~i~~~l~~~l~~ 197 (314)
.+.....+||.++++.|.+++.+
T Consensus 215 at~gd~~lGG~dfD~~l~~~l~~ 237 (668)
T PRK13410 215 ATSGDTQLGGNDFDKRIVDWLAE 237 (668)
T ss_pred EeecCCCCChhHHHHHHHHHHHH
Confidence 22234579999999999887754
No 37
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=99.45 E-value=9.5e-13 Score=128.30 Aligned_cols=94 Identities=14% Similarity=0.179 Sum_probs=74.8
Q ss_pred CceEEeeCCCCChHHHHHHHHHHhhhCCCCeeeechhhhHhhhhcC-------CCeEEEEecCCCceEEEEee--CCeec
Q 037845 103 HPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASG-------RTTGIVLDSGDGVSHTVPIY--EGYAL 173 (314)
Q Consensus 103 ~~vll~~~~~~~~~~~~~~~~~lfe~~~~~~v~~~~~~~~a~~~~g-------~~t~lVVDiG~~~t~i~pV~--~g~~~ 173 (314)
..++|+.|.+++..+|+ .+.-+.+..|++.+.++++|.||++++| ..+-+|+|+|+++++|+.+. +|...
T Consensus 141 ~~~VItVPa~f~~~qR~-a~~~Aa~~AGl~v~~li~EptAAAl~y~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~ 219 (653)
T PTZ00009 141 KDAVVTVPAYFNDSQRQ-ATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTFDVSLLTIEDGIFE 219 (653)
T ss_pred ceeEEEeCCCCCHHHHH-HHHHHHHHcCCceeEEecchHHHHHHHhhhccCCCCCEEEEEECCCCeEEEEEEEEeCCeEE
Confidence 56899999999998887 5556778899999999999999999875 35789999999999998764 44322
Q ss_pred -cccceEecchHHHHHHHHHHHHHh
Q 037845 174 -PHAILRLDLAGRDLTDALMKILTE 197 (314)
Q Consensus 174 -~~~~~~~~~GG~~i~~~l~~~l~~ 197 (314)
..+.....+||+++++.|.+++.+
T Consensus 220 v~a~~gd~~lGG~d~D~~l~~~~~~ 244 (653)
T PTZ00009 220 VKATAGDTHLGGEDFDNRLVEFCVQ 244 (653)
T ss_pred EEEecCCCCCChHHHHHHHHHHHHH
Confidence 222224589999999999888754
No 38
>PRK11678 putative chaperone; Provisional
Probab=99.42 E-value=2.8e-12 Score=119.18 Aligned_cols=180 Identities=18% Similarity=0.223 Sum_probs=109.9
Q ss_pred cEEEeCCCccEEEEEeCCCCCC--------ccCCceeeecCCCC-------------c------------------cccC
Q 037845 9 PLVCDNGTGMVKAGFAGDDAPR--------AVFPSIVGRPRHTG-------------V------------------MVGM 49 (314)
Q Consensus 9 ~vViD~Gs~~~k~G~ag~~~P~--------~~~ps~~~~~~~~~-------------~------------------~~~~ 49 (314)
.+-||+||.+.-+++..+..|. ..+||++......- + ....
T Consensus 2 ~iGID~GTtNs~va~~~~~~~~li~~~~~~~~~pS~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (450)
T PRK11678 2 FIGFDYGTANCSVAVMRDGKPRLLPLENDSTYLPSTLCAPTREAVSEWLYRHLDVPAYDDERQALLRRAIRYNREEDIDV 81 (450)
T ss_pred eEEEecCccceeeEEeeCCceEEEEcCCCCCcCCeeeeccCchhhhhhhhhhcccCcccchhhhhhhhhhhhcccccccc
Confidence 4789999999999998654333 35677775531100 0 0011
Q ss_pred CCcccccccccccc-----cCCc---eee-----CcccCCccCCHHHH-HHHHHHhcc---cccccCCCCCceEEeeCCC
Q 037845 50 GQKDAYVGDEAQSK-----RGIL---TLK-----YPIEHGIVSNWDDM-EKIWHHTFY---NELRVAPEEHPVLLTEAPL 112 (314)
Q Consensus 50 ~~~~~~vg~~~~~~-----~~~~---~~~-----~p~~~g~i~~~~~l-e~~l~~~~~---~~l~~~~~~~~vll~~~~~ 112 (314)
+.....+|.+|... .... .++ .++..+.+...+.+ ..+|+++-. ..++ ..-..++|+.|..
T Consensus 82 ~~~~~~~G~~A~~~~~~~p~~~r~i~s~Kr~lg~~~~~~~~~~~~e~l~a~iL~~lk~~ae~~~g--~~v~~~VItvPa~ 159 (450)
T PRK11678 82 TAQSVFFGLAALAQYLEDPEEVYFVKSPKSFLGASGLKPQQVALFEDLVCAMMLHIKQQAEAQLQ--AAITQAVIGRPVN 159 (450)
T ss_pred cccccchhHHHHHhhccCCCCceEEecchhhhccCCCCccceeCHHHHHHHHHHHHHHHHHHHhC--CCCCcEEEEECCc
Confidence 23466788887432 1110 112 12333333333322 333443321 1222 1235689999888
Q ss_pred CC-----hHHHHH--HHHHHhhhCCCCeeeechhhhHhhhhcC-----CCeEEEEecCCCceEEEEeeCC----------
Q 037845 113 NP-----KANREK--MTQIMFETFNVPAMYVAIQAVLSLYASG-----RTTGIVLDSGDGVSHTVPIYEG---------- 170 (314)
Q Consensus 113 ~~-----~~~~~~--~~~~lfe~~~~~~v~~~~~~~~a~~~~g-----~~t~lVVDiG~~~t~i~pV~~g---------- 170 (314)
+. ..+|.. .++-..+..|++.+.++++|.||++++| ..+-+|+|+|+++++++.|--+
T Consensus 160 F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~~~~~~vlV~D~GGGT~D~Svv~~~~~~~~~~~r~ 239 (450)
T PRK11678 160 FQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATLTEEKRVLVVDIGGGTTDCSMLLMGPSWRGRADRS 239 (450)
T ss_pred cccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhccccCCCCeEEEEEeCCCeEEEEEEEecCcccccCCcc
Confidence 75 455532 3567778899999999999999999987 3679999999999998877421
Q ss_pred -eeccccceEecchHHHHHHHHH
Q 037845 171 -YALPHAILRLDLAGRDLTDALM 192 (314)
Q Consensus 171 -~~~~~~~~~~~~GG~~i~~~l~ 192 (314)
.++-++. ..+||+++++.|.
T Consensus 240 ~~vla~~G--~~lGG~DfD~~L~ 260 (450)
T PRK11678 240 ASLLGHSG--QRIGGNDLDIALA 260 (450)
T ss_pred eeEEecCC--CCCChHHHHHHHH
Confidence 1222222 3699999999986
No 39
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=99.35 E-value=2e-11 Score=111.78 Aligned_cols=97 Identities=14% Similarity=0.147 Sum_probs=76.9
Q ss_pred ChHHHHHHHHHHhhhCCCCeeeechhhhHhhhhcC-----CCeEEEEecCCCceEEEEeeCCeeccccceEecchHHHHH
Q 037845 114 PKANREKMTQIMFETFNVPAMYVAIQAVLSLYASG-----RTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLT 188 (314)
Q Consensus 114 ~~~~~~~~~~~lfe~~~~~~v~~~~~~~~a~~~~g-----~~t~lVVDiG~~~t~i~pV~~g~~~~~~~~~~~~GG~~i~ 188 (314)
++...+.+.+ +++..|+.-+.+..+|+|+++++. ..+.+|||+|+++|+++.+.+|.... ...+++||++++
T Consensus 156 ~~~~v~~~~~-~~~~aGl~~~~i~~~~~A~a~a~~~~~~~~~~~~vvDiG~gtt~i~i~~~g~~~~--~~~i~~GG~~it 232 (371)
T TIGR01174 156 SSTILRNLVK-CVERCGLEVDNIVLSGLASAIAVLTEDEKELGVCLIDIGGGTTDIAVYTGGSIRY--TKVIPIGGNHIT 232 (371)
T ss_pred EHHHHHHHHH-HHHHcCCCeeeEEEhhhhhhhhhcCcchhcCCEEEEEeCCCcEEEEEEECCEEEE--EeeecchHHHHH
Confidence 4445554444 567889999999999999998764 24689999999999999999998664 356899999999
Q ss_pred HHHHHHHHhcCCccccccHHHHHHHHHhhccccc
Q 037845 189 DALMKILTERGYMFTTTAEREIVRDMKEKLAYVA 222 (314)
Q Consensus 189 ~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~~~ 222 (314)
+.+.+.+.. ..+.++.+|.+++...
T Consensus 233 ~~i~~~l~~---------~~~~AE~lK~~~~~~~ 257 (371)
T TIGR01174 233 KDIAKALRT---------PLEEAERIKIKYGCAS 257 (371)
T ss_pred HHHHHHhCC---------CHHHHHHHHHHeeEec
Confidence 998876542 4678999999888753
No 40
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=99.30 E-value=1.3e-11 Score=112.22 Aligned_cols=154 Identities=19% Similarity=0.237 Sum_probs=103.9
Q ss_pred HHhhhCCCCeeeechhhhHhhhhcC-----CCeEEEEecCCCceEEEEeeCCeeccccceEecchHHHHHHHHHHHHHhc
Q 037845 124 IMFETFNVPAMYVAIQAVLSLYASG-----RTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTER 198 (314)
Q Consensus 124 ~lfe~~~~~~v~~~~~~~~a~~~~g-----~~t~lVVDiG~~~t~i~pV~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~ 198 (314)
.++|+.+..-..++-+|+|++.+.= .-++++||+|+++|+|+.+.+|.+.... .+|+||+++|+.+.+-|.-
T Consensus 172 k~v~r~gl~v~~i~l~plAsa~a~L~~dEkelGv~lIDiG~GTTdIai~~~G~l~~~~--~ipvgG~~vT~DIa~~l~t- 248 (418)
T COG0849 172 KCVERAGLKVDNIVLEPLASALAVLTEDEKELGVALIDIGGGTTDIAIYKNGALRYTG--VIPVGGDHVTKDIAKGLKT- 248 (418)
T ss_pred HHHHHhCCCeeeEEEehhhhhhhccCcccHhcCeEEEEeCCCcEEEEEEECCEEEEEe--eEeeCccHHHHHHHHHhCC-
Confidence 3457788887888888898887753 4699999999999999999999888654 5899999999999998774
Q ss_pred CCccccccHHHHHHHHHhhccccccCHHHHHHhhcCCCCCcceEECCC--CCe-EeeCC------eeeecccccCCCCcC
Q 037845 199 GYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPD--GQI-ITIGA------ERFRCPEVLFQPSLI 269 (314)
Q Consensus 199 ~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~--~~~-i~i~~------~~~~~~E~lF~p~~~ 269 (314)
+.+.+|++|.+++....+.. .....++.|. +.. ..+.. .+-+++|
T Consensus 249 --------~~~~AE~iK~~~g~a~~~~~----------~~~~~i~v~~vg~~~~~~~t~~~ls~II~aR~~E-------- 302 (418)
T COG0849 249 --------PFEEAERIKIKYGSALISLA----------DDEETIEVPSVGSDIPRQVTRSELSEIIEARVEE-------- 302 (418)
T ss_pred --------CHHHHHHHHHHcCccccCcC----------CCcceEecccCCCcccchhhHHHHHHHHHhhHHH--------
Confidence 67889999999887544321 1112222221 111 00100 0111222
Q ss_pred CCCCCCHHHHHHHHHHhCChhHHHhhhcCeEEecCCCCCCCCCCC
Q 037845 270 GMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPVLPTV 314 (314)
Q Consensus 270 ~~~~~~l~~~i~~~i~~~~~d~r~~l~~nIvl~GG~s~i~G~~e~ 314 (314)
+-+++...+++.-.. ..+...|+||||+++|||+.|+
T Consensus 303 ------i~~lV~~~l~~~g~~--~~~~~gvVlTGG~a~l~Gi~el 339 (418)
T COG0849 303 ------ILELVKAELRKSGLP--NHLPGGVVLTGGGAQLPGIVEL 339 (418)
T ss_pred ------HHHHHHHHHHHcCcc--ccCCCeEEEECchhcCccHHHH
Confidence 224444444443222 5677789999999999998764
No 41
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=99.19 E-value=1.1e-10 Score=113.70 Aligned_cols=94 Identities=21% Similarity=0.215 Sum_probs=71.1
Q ss_pred CceEEeeCCCCChHHHHHHHHHHhhhCCCCeeeechhhhHhhhhcC------CCeEEEEecCCCceEEEEee--CCeec-
Q 037845 103 HPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASG------RTTGIVLDSGDGVSHTVPIY--EGYAL- 173 (314)
Q Consensus 103 ~~vll~~~~~~~~~~~~~~~~~lfe~~~~~~v~~~~~~~~a~~~~g------~~t~lVVDiG~~~t~i~pV~--~g~~~- 173 (314)
..++++.|..++..+|+ .++.+.+..|++.+.++++|.||+++++ ..+-+|+|+|+++++|+.+. +|..-
T Consensus 136 ~~~vitVPa~~~~~qr~-~~~~Aa~~agl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~Gggt~dvs~~~~~~~~~~v 214 (602)
T PF00012_consen 136 TDVVITVPAYFTDEQRQ-ALRDAAELAGLNVLRLINEPTAAALAYGLERSDKGKTVLVVDFGGGTFDVSVVEFSNGQFEV 214 (602)
T ss_dssp EEEEEEE-TT--HHHHH-HHHHHHHHTT-EEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEEESSEEEEEEEEEETTEEEE
T ss_pred ccceeeechhhhhhhhh-cccccccccccccceeecccccccccccccccccccceeccccccceEeeeehhcccccccc
Confidence 35899999999999988 5555667899999999999999998775 35889999999999888774 45322
Q ss_pred cccceEecchHHHHHHHHHHHHHh
Q 037845 174 PHAILRLDLAGRDLTDALMKILTE 197 (314)
Q Consensus 174 ~~~~~~~~~GG~~i~~~l~~~l~~ 197 (314)
........+||.++++.|.+++.+
T Consensus 215 ~~~~~~~~lGG~~~D~~l~~~~~~ 238 (602)
T PF00012_consen 215 LATAGDNNLGGRDFDEALAEYLLE 238 (602)
T ss_dssp EEEEEETTCSHHHHHHHHHHHHHH
T ss_pred cccccccccccceecceeeccccc
Confidence 223335689999999999988865
No 42
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=99.16 E-value=2.7e-11 Score=112.37 Aligned_cols=170 Identities=16% Similarity=0.178 Sum_probs=108.6
Q ss_pred ChHHHHHHHHHHhhhCCCCeeeechhhhHhhhhcC-----CCeEEEEecCCCceEEEEeeCCeeccccceEecchHHHHH
Q 037845 114 PKANREKMTQIMFETFNVPAMYVAIQAVLSLYASG-----RTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLT 188 (314)
Q Consensus 114 ~~~~~~~~~~~lfe~~~~~~v~~~~~~~~a~~~~g-----~~t~lVVDiG~~~t~i~pV~~g~~~~~~~~~~~~GG~~i~ 188 (314)
++...+.+.+ +++..|+.-..++.+|+|++++.. ....+|||+|+++|+++.+.+|.++. ...+++||++++
T Consensus 164 ~~~~~~~~~~-a~~~aGl~v~~iv~ep~Aaa~a~l~~~e~~~gv~vvDiGggtTdisv~~~G~l~~--~~~i~~GG~~it 240 (420)
T PRK09472 164 HNDMAKNIVK-AVERCGLKVDQLIFAGLASSYAVLTEDERELGVCVVDIGGGTMDIAVYTGGALRH--TKVIPYAGNVVT 240 (420)
T ss_pred chHHHHHHHH-HHHHcCCeEeeEEehhhHHHHHhcChhhhhcCeEEEEeCCCceEEEEEECCEEEE--EeeeechHHHHH
Confidence 3444455655 668899999999999999999874 24689999999999999999997774 446899999999
Q ss_pred HHHHHHHHhcCCccccccHHHHHHHHHhhccccccCHHHHHHhhcCCCCCcceEECCC--C-CeEeeCCeeeecccccCC
Q 037845 189 DALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPD--G-QIITIGAERFRCPEVLFQ 265 (314)
Q Consensus 189 ~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~--~-~~i~i~~~~~~~~E~lF~ 265 (314)
+.+...+.- ..+.++.+|.+++....+.. .....++++. + ....+. +....+++-.
T Consensus 241 ~dIa~~l~i---------~~~~AE~lK~~~g~~~~~~~----------~~~~~i~v~~~~~~~~~~i~--~~~l~~ii~~ 299 (420)
T PRK09472 241 SDIAYAFGT---------PPSDAEAIKVRHGCALGSIV----------GKDESVEVPSVGGRPPRSLQ--RQTLAEVIEP 299 (420)
T ss_pred HHHHHHhCc---------CHHHHHHHHHhcceeccccC----------CCCceeEecCCCCCCCeEEc--HHHHHHHHHH
Confidence 999876642 46789999988765432210 0011222221 1 001111 0011111110
Q ss_pred CCcCCCCCCCHHHHHHHHHHhCChhHHH-----hhhcCeEEecCCCCCCCCCC
Q 037845 266 PSLIGMEAAGIHETTYNSIMKCDVDIRK-----DLYGNIVLSGGSTMFPVLPT 313 (314)
Q Consensus 266 p~~~~~~~~~l~~~i~~~i~~~~~d~r~-----~l~~nIvl~GG~s~i~G~~e 313 (314)
. ...|.+.|.++++.++..++. .+.+.|+||||+|+|||+.|
T Consensus 300 r------~~ei~~~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e 346 (420)
T PRK09472 300 R------YTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAA 346 (420)
T ss_pred H------HHHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEEeCchhccccHHH
Confidence 0 002344555556555555543 34556999999999999876
No 43
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=3.5e-10 Score=108.32 Aligned_cols=187 Identities=18% Similarity=0.196 Sum_probs=119.5
Q ss_pred CCcEEEeCCCccEEEEEeCCC-CCCccCCceeeecCCCCccccCC-Ccccccccccccc------cCCceeeCcccCC--
Q 037845 7 IQPLVCDNGTGMVKAGFAGDD-APRAVFPSIVGRPRHTGVMVGMG-QKDAYVGDEAQSK------RGILTLKYPIEHG-- 76 (314)
Q Consensus 7 ~~~vViD~Gs~~~k~G~ag~~-~P~~~~ps~~~~~~~~~~~~~~~-~~~~~vg~~~~~~------~~~~~~~~p~~~g-- 76 (314)
..+|-||+|+.++-+++.... .|. ++++-.+.+..++.. ... ..+.++|..|... +..+.+++.+..+
T Consensus 5 ~~~iGIDlGTTNS~vA~~~~~~~~~-vi~n~~g~r~~PSvv-~f~~~~~~~vG~~A~~q~~~~p~~t~~~~kr~~G~~~~ 82 (579)
T COG0443 5 KKAIGIDLGTTNSVVAVMRGGGLPK-VIENAEGERLTPSVV-AFSKNGEVLVGQAAKRQAVDNPENTIFSIKRKIGRGSN 82 (579)
T ss_pred ceEEEEEcCCCcEEEEEEeCCCCce-EecCCCCCcccceEE-EECCCCCEEecHHHHHHhhhCCcceEEEEehhcCCCCC
Confidence 468999999999999988655 454 333333332222211 111 1257888777431 1122333333321
Q ss_pred ----------ccCCHHHH-HHHHHHhccccc--ccCCCCCceEEeeCCCCChHHHHHHHHHHhhhCCCCeeeechhhhHh
Q 037845 77 ----------IVSNWDDM-EKIWHHTFYNEL--RVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLS 143 (314)
Q Consensus 77 ----------~i~~~~~l-e~~l~~~~~~~l--~~~~~~~~vll~~~~~~~~~~~~~~~~~lfe~~~~~~v~~~~~~~~a 143 (314)
.....+.+ ..+|.++- +.. .....-..++++.|.+++..+|. .++-+.+..|++-+.++++|.||
T Consensus 83 ~~~~~~~~~~~~~~~eeisa~~L~~lk-~~ae~~lg~~v~~~VItVPayF~d~qR~-at~~A~~iaGl~vlrlinEPtAA 160 (579)
T COG0443 83 GLKISVEVDGKKYTPEEISAMILTKLK-EDAEAYLGEKVTDAVITVPAYFNDAQRQ-ATKDAARIAGLNVLRLINEPTAA 160 (579)
T ss_pred CCcceeeeCCeeeCHHHHHHHHHHHHH-HHHHHhhCCCcceEEEEeCCCCCHHHHH-HHHHHHHHcCCCeEEEecchHHH
Confidence 22222222 22333321 111 11223467999999999999977 77777888999999999999999
Q ss_pred hhhcCC-----CeEEEEecCCCceEEEEeeC--Ce-eccccceEecchHHHHHHHHHHHHHh
Q 037845 144 LYASGR-----TTGIVLDSGDGVSHTVPIYE--GY-ALPHAILRLDLAGRDLTDALMKILTE 197 (314)
Q Consensus 144 ~~~~g~-----~t~lVVDiG~~~t~i~pV~~--g~-~~~~~~~~~~~GG~~i~~~l~~~l~~ 197 (314)
+|++|. .+-+|+|+|+++++++-|.= |. .+..+.....+||++++..|...+..
T Consensus 161 Alayg~~~~~~~~vlV~DlGGGTfDvSll~~~~g~~ev~at~gd~~LGGddfD~~l~~~~~~ 222 (579)
T COG0443 161 ALAYGLDKGKEKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDNALIDYLVM 222 (579)
T ss_pred HHHhHhccCCCcEEEEEEcCCCCEEEEEEEEcCCEEEEeecCCCcccCchhHHHHHHHHHHH
Confidence 999973 58899999999999987743 32 22334456789999999999887755
No 44
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=98.99 E-value=1.9e-08 Score=90.80 Aligned_cols=187 Identities=15% Similarity=0.167 Sum_probs=111.0
Q ss_pred CCcEEEeCCCccEEEEEeCCCCCCccCCceeeecCCCCc-------------cccCCCcc---cccccccccccCCceee
Q 037845 7 IQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGV-------------MVGMGQKD---AYVGDEAQSKRGILTLK 70 (314)
Q Consensus 7 ~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~~~~~~~~~~-------------~~~~~~~~---~~vg~~~~~~~~~~~~~ 70 (314)
+.++-||+|-.++|+-+. +. ...+|+.++....... ....+... +++|+++..... ...
T Consensus 2 ~~v~~iDiG~g~tK~~~~-~~--~~~~ps~~~~~~~~~~~~~~~~~~~~~~~~v~v~g~~~~~y~~G~~~~~~~~--~~~ 76 (344)
T PRK13917 2 VYVMALDFGNGFVKGKIN-DE--KFVIPSRYGRKTNENNQLSGFVDNKLDVSEFIINGNEDEVLLFGNDLDKTTN--TGK 76 (344)
T ss_pred ceEEEEeccCCeEEEEec-CC--CEEcceeccCCCCccccccccCCCCCcceEEEecCcccccEEEcchhhhccc--ccC
Confidence 457899999999999654 21 2355777654321110 11122234 777776533211 001
Q ss_pred CcccCCccCCHHHHHHHHHHhcccccccC--CCCCceEEe--eCCCC-ChHHHHHHHHHHhhh-----------CCCCee
Q 037845 71 YPIEHGIVSNWDDMEKIWHHTFYNELRVA--PEEHPVLLT--EAPLN-PKANREKMTQIMFET-----------FNVPAM 134 (314)
Q Consensus 71 ~p~~~g~i~~~~~le~~l~~~~~~~l~~~--~~~~~vll~--~~~~~-~~~~~~~~~~~lfe~-----------~~~~~v 134 (314)
.+.....-+.-+.+..++..++...+... .+...++|+ .|... ....++.+.+.+-.. ..+..|
T Consensus 77 ~~~~~~~~y~~~~y~~L~~~Al~~~~~~~~~~~~~~v~l~tGLPv~~~~~~~~~~l~k~l~~~~~v~~~g~~~~I~i~~V 156 (344)
T PRK13917 77 DTYSTNDRYDIKQFKTLVKCALAGLAARTVPEEVVEVVVATGMPSEEIGTDKVAKFEKLLNKSRLIEINGIAVTINVKGV 156 (344)
T ss_pred CcccccccccchhHHHHHHHHHHHhhhhhcCCCcceeEEEEcCCHHHHHHHHHHHHHHHhcCceEEEECCEEEEEEEEEE
Confidence 11111111123467777777763322211 122344442 34333 222235555544222 456789
Q ss_pred eechhhhHhhhhcC-------------CCeEEEEecCCCceEEEEeeCCeeccccceEecchHHHHHHHHHHHHHhc
Q 037845 135 YVAIQAVLSLYASG-------------RTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTER 198 (314)
Q Consensus 135 ~~~~~~~~a~~~~g-------------~~t~lVVDiG~~~t~i~pV~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~ 198 (314)
.+++++++|++... ....+|||+|+.+|.++.+.++.+.......++.|..++.+.+.+.+..+
T Consensus 157 ~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~ilvIDIG~~TtD~~v~~~~~~~~~~s~s~~~G~~~~~~~I~~~i~~~ 233 (344)
T PRK13917 157 KVVAQPMGTLLDLYLDNDGVVADKAFEEGKVSVIDFGSGTTDLDTIQNLKRVEEESFVIPKGTIDVYKRIASHISKK 233 (344)
T ss_pred EEecccHHHHHHHHhcccCcccchhcccCcEEEEEcCCCcEEEEEEeCcEEcccccccccchHHHHHHHHHHHHHhh
Confidence 99999999987542 23569999999999999999999888777779999999999999999543
No 45
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=98.97 E-value=4.9e-08 Score=88.67 Aligned_cols=94 Identities=17% Similarity=0.128 Sum_probs=67.4
Q ss_pred ChHHHHHHHHHHhhhCCCCeeeechhhhHhhhhc----------C-CC-eEEEEecCCCceEEEEeeCCeeccccceEec
Q 037845 114 PKANREKMTQIMFETFNVPAMYVAIQAVLSLYAS----------G-RT-TGIVLDSGDGVSHTVPIYEGYALPHAILRLD 181 (314)
Q Consensus 114 ~~~~~~~~~~~lfe~~~~~~v~~~~~~~~a~~~~----------g-~~-t~lVVDiG~~~t~i~pV~~g~~~~~~~~~~~ 181 (314)
++...+.+.++ |+..|+.-..+..+++|.+-.. . .. +.++||+|+.+|+++.+.+|.+.. .+.++
T Consensus 141 ~~~~v~~~~~~-~~~aGl~~~~id~~~~Al~~~~~~~~~~~~~~~~~~~~~~lvdiG~~~t~l~i~~~g~~~~--~r~i~ 217 (348)
T TIGR01175 141 RKEVVDSRLHA-LKLAGLEPKVVDVESFALLRAWRLLGEQLASRTYRLTDAALVDIGATSSTLNLLHPGRMLF--TREVP 217 (348)
T ss_pred cHHHHHHHHHH-HHHcCCceEEEecHHHHHHHHHHHHHhhCccccccCceEEEEEECCCcEEEEEEECCeEEE--EEEee
Confidence 56666666665 6678777666666666653322 1 22 499999999999999999998775 45789
Q ss_pred chHHHHHHHHHHHHHhcCCccccccHHHHHHHHHhhcc
Q 037845 182 LAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLA 219 (314)
Q Consensus 182 ~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~ 219 (314)
+||+++++.+.+.+.. +.+.++.+|....
T Consensus 218 ~G~~~i~~~i~~~~~~---------~~~~Ae~~k~~~~ 246 (348)
T TIGR01175 218 FGTRQLTSELSRAYGL---------NPEEAGEAKQQGG 246 (348)
T ss_pred chHHHHHHHHHHHcCC---------CHHHHHHHHhcCC
Confidence 9999999998765532 4566777776543
No 46
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=98.92 E-value=1.2e-08 Score=91.42 Aligned_cols=183 Identities=12% Similarity=0.050 Sum_probs=115.2
Q ss_pred EeCCCccEEEEEeC-CCCC-CccCCceeeecCCCCc------------cccCCCcccccccccccccCCceeeCcccCCc
Q 037845 12 CDNGTGMVKAGFAG-DDAP-RAVFPSIVGRPRHTGV------------MVGMGQKDAYVGDEAQSKRGILTLKYPIEHGI 77 (314)
Q Consensus 12 iD~Gs~~~k~G~ag-~~~P-~~~~ps~~~~~~~~~~------------~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~ 77 (314)
||+|-.++|+-+.+ +..+ +..+||.++....... ....+...++||+.+...... ...+.+.+..
T Consensus 2 iDvGyg~~K~~~~~~~~~~~~~~fPS~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~y~VG~~a~~~~~~-~~~~~~~~~~ 80 (320)
T TIGR03739 2 VDVGYGNTKFVSQVRGTDIRCASFPSVAPPSSRESPAWPGGSEARKTVCVPVGGLFYEVGPDVSLAADT-NRARQLHDEY 80 (320)
T ss_pred ccccCCceEEEecCCCCceeeEEcccccccccccccccccccCCCceEEEEECCEEEEeccchhhcccC-ccceeccccc
Confidence 79999999986643 2233 3468888755322111 112345677888876432211 1111222222
Q ss_pred cCCHHHHHHHHHHhcccccccCCCCCceEEeeCCCCChHHHHHHHHHHhhh--------CCCCeeeechhhhHhhhhc--
Q 037845 78 VSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET--------FNVPAMYVAIQAVLSLYAS-- 147 (314)
Q Consensus 78 i~~~~~le~~l~~~~~~~l~~~~~~~~vll~~~~~~~~~~~~~~~~~lfe~--------~~~~~v~~~~~~~~a~~~~-- 147 (314)
.. -+.+..++..++.. .+.+ ....+++-.|...-...++.+.+.+-.. ..+..|.++|+++.|.+..
T Consensus 81 ~~-~~~~~~L~~~Al~~-~~~~-~~~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~~ 157 (320)
T TIGR03739 81 TE-TPEYMALLRGALAL-SKVR-EIDQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFVA 157 (320)
T ss_pred cC-CHHHHHHHHHHHHH-hcCC-CCCEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHHh
Confidence 22 23566677666632 2221 1112343345555456677777665432 4678899999999887754
Q ss_pred -------CCCeEEEEecCCCceEEEEeeCCeeccccceEecchHHHHHHHHHHHHHhc
Q 037845 148 -------GRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTER 198 (314)
Q Consensus 148 -------g~~t~lVVDiG~~~t~i~pV~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~ 198 (314)
.....+|||+|+.+|.++.+-++.+......+.+.|-..+.+.+.+.+.++
T Consensus 158 ~~~~~~~~~~~~lVIDIG~~TtD~~~~~~~~~~~~~s~s~~~G~~~~~~~I~~~i~~~ 215 (320)
T TIGR03739 158 QHGKLLTGKEQSLIIDPGYFTFDWLVARGMRLVQKRSGSVNGGMSDIYRLLAAEISKD 215 (320)
T ss_pred cCCCcccCcCcEEEEecCCCeeeeehccCCEEcccccCCchhHHHHHHHHHHHHHHhh
Confidence 345679999999999998888888877776678999999999999999754
No 47
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=5.4e-07 Score=79.93 Aligned_cols=93 Identities=17% Similarity=0.157 Sum_probs=69.6
Q ss_pred CceEEeeCCCCChHHHHHHHHHHhhhCCCCeeeechhhhHhhhhcC------CCeEEEEecCCCceEEE--EeeCCeec-
Q 037845 103 HPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASG------RTTGIVLDSGDGVSHTV--PIYEGYAL- 173 (314)
Q Consensus 103 ~~vll~~~~~~~~~~~~~~~~~lfe~~~~~~v~~~~~~~~a~~~~g------~~t~lVVDiG~~~t~i~--pV~~g~~~- 173 (314)
...+++.|.+++..+|+ .++-.---.|..-+.++++|.+|+.++| ..+-||.|+|.++-.|. -|-+|.--
T Consensus 173 ~~AVvTvPAYFNDAQrQ-ATKDAGtIAgLnV~RIiNePTaAAIAYGLDKk~gEknilVfDLGGGTFDVSlLtIdnGVFeV 251 (663)
T KOG0100|consen 173 THAVVTVPAYFNDAQRQ-ATKDAGTIAGLNVVRIINEPTAAAIAYGLDKKDGEKNILVFDLGGGTFDVSLLTIDNGVFEV 251 (663)
T ss_pred cceEEecchhcchHHHh-hhcccceeccceEEEeecCccHHHHHhcccccCCcceEEEEEcCCceEEEEEEEEcCceEEE
Confidence 35688889998888887 6666555667778899999999999886 46899999999997665 44555321
Q ss_pred cccceEecchHHHHHHHHHHHHH
Q 037845 174 PHAILRLDLAGRDLTDALMKILT 196 (314)
Q Consensus 174 ~~~~~~~~~GG~~i~~~l~~~l~ 196 (314)
..+..-..+||.++++..++.+-
T Consensus 252 laTnGDThLGGEDFD~rvm~~fi 274 (663)
T KOG0100|consen 252 LATNGDTHLGGEDFDQRVMEYFI 274 (663)
T ss_pred EecCCCcccCccchHHHHHHHHH
Confidence 23333568999999988776653
No 48
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=98.74 E-value=1.9e-07 Score=84.43 Aligned_cols=179 Identities=20% Similarity=0.256 Sum_probs=95.1
Q ss_pred CHHHHHHHHHHhcccccccCCC-----------------CCceEEeeCCCCChHHHHHHHHHHhhhCCCCeeee--chhh
Q 037845 80 NWDDMEKIWHHTFYNELRVAPE-----------------EHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYV--AIQA 140 (314)
Q Consensus 80 ~~~~le~~l~~~~~~~l~~~~~-----------------~~~vll~~~~~~~~~~~~~~~~~lfe~~~~~~v~~--~~~~ 140 (314)
+.+.++..+++=..+++..+.+ ...|+++.. +++.-+..+++ |+..|.+-..+ -.-+
T Consensus 86 ~~~el~~~I~~Ea~~~iP~~~~e~~~D~~vl~~~~~~~~~~~Vll~Aa---~k~~v~~~~~~-~~~aGL~~~~vDv~~~A 161 (340)
T PF11104_consen 86 PEKELEEAIRWEAEQYIPFPLEEVVFDYQVLGESEDGEEKMEVLLVAA---PKEIVESYVEL-FEEAGLKPVAVDVEAFA 161 (340)
T ss_dssp -HHHHHHHHHHHHGGG-SS----EEEEEEESS-GS-TTSEEEEEEEEE---EHHHHHHHHHH-HHHTT-EEEEEEEHHHH
T ss_pred CHHHHHHHHHHHHHhhCCCChhHeEEEEEEeccCCCCCCceEEEEEEE---cHHHHHHHHHH-HHHcCCceEEEeehHHH
Confidence 5677787777766555544322 123444432 45555544443 56677764433 3334
Q ss_pred hHhhhhc---------CCCeEEEEecCCCceEEEEeeCCeeccccceEecchHHHHHHHHHHHHHhcCCccccccHHHHH
Q 037845 141 VLSLYAS---------GRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIV 211 (314)
Q Consensus 141 ~~a~~~~---------g~~t~lVVDiG~~~t~i~pV~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~ 211 (314)
++-+|.. ...+-++||+|+..|+++-+.+|.++. .+.+++||+++++.+.+.+.. +.+.+
T Consensus 162 l~r~~~~~~~~~~~~~~~~~~~lvdiG~~~t~~~i~~~g~~~f--~R~i~~G~~~l~~~i~~~~~i---------~~~~A 230 (340)
T PF11104_consen 162 LARLFEFLEPQLPDEEDAETVALVDIGASSTTVIIFQNGKPIF--SRSIPIGGNDLTEAIARELGI---------DFEEA 230 (340)
T ss_dssp GGGGGHHHHHTST----T-EEEEEEE-SS-EEEEEEETTEEEE--EEEES-SHHHHHHHHHHHTT-----------HHHH
T ss_pred HHHHHHHHHHhCCcccccceEEEEEecCCeEEEEEEECCEEEE--EEEEeeCHHHHHHHHHHhcCC---------CHHHH
Confidence 4344433 124569999999999999999998875 456899999999999876542 45666
Q ss_pred HHHHhhccccccCHHHHHHhhcCCCCCcceEECCCCCeEeeCCeeeecccccCCCCcCCCCCCCHHHHHHHHHHhCChhH
Q 037845 212 RDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDI 291 (314)
Q Consensus 212 ~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~ 291 (314)
+.+|..... ..+...+. -+.+++ .|..-|.++++-.-...
T Consensus 231 e~~k~~~~l-~~~~~~~~------------------------------l~~~~~---------~l~~EI~rsl~~y~~~~ 270 (340)
T PF11104_consen 231 EELKRSGGL-PEEYDQDA------------------------------LRPFLE---------ELAREIRRSLDFYQSQS 270 (340)
T ss_dssp HHHHHHT-------HHHH------------------------------HHHHHH---------HHHHHHHHHHHHHHHH-
T ss_pred HHHHhcCCC-CcchHHHH------------------------------HHHHHH---------HHHHHHHHHHHHHHhcC
Confidence 666654221 11110000 000011 24445555554322223
Q ss_pred HHhhhcCeEEecCCCCCCCCCC
Q 037845 292 RKDLYGNIVLSGGSTMFPVLPT 313 (314)
Q Consensus 292 r~~l~~nIvl~GG~s~i~G~~e 313 (314)
...-.++|+|+||+|.++|+.+
T Consensus 271 ~~~~i~~I~L~Ggga~l~gL~~ 292 (340)
T PF11104_consen 271 GGESIERIYLSGGGARLPGLAE 292 (340)
T ss_dssp -----SEEEEESGGGGSTTHHH
T ss_pred CCCCCCEEEEECCccchhhHHH
Confidence 3445678999999999999864
No 49
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=2.9e-06 Score=80.30 Aligned_cols=94 Identities=14% Similarity=0.186 Sum_probs=73.3
Q ss_pred CceEEeeCCCCChHHHHHHHHHHhhhCCCCeeeechhhhHhhhhcC-------CCeEEEEecCCCceEEEEee--CCe-e
Q 037845 103 HPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASG-------RTTGIVLDSGDGVSHTVPIY--EGY-A 172 (314)
Q Consensus 103 ~~vll~~~~~~~~~~~~~~~~~lfe~~~~~~v~~~~~~~~a~~~~g-------~~t~lVVDiG~~~t~i~pV~--~g~-~ 172 (314)
..++++.|..++..+|. .++..-.-.|++.+-++++|.||+.++| ..+-+|.|+|+++..|.++. +|. .
T Consensus 144 ~~aviTVPa~F~~~Qr~-at~~A~~iaGl~vlrii~EPtAaalAygl~k~~~~~~~VlI~DlGggtfdvs~l~i~gG~~~ 222 (620)
T KOG0101|consen 144 KKAVVTVPAYFNDSQRA-ATKDAALIAGLNVLRIINEPTAAALAYGLDKKVLGERNVLIFDLGGGTFDVSVLSLEGGIFE 222 (620)
T ss_pred eeEEEEecCCcCHHHHH-HHHHHHHhcCCceeeeecchHHHHHHhhccccccceeeEEEEEcCCCceeeeeEEeccchhh
Confidence 46889999999988888 6666667788999999999999999987 34669999999998888763 442 2
Q ss_pred ccccceEecchHHHHHHHHHHHHHh
Q 037845 173 LPHAILRLDLAGRDLTDALMKILTE 197 (314)
Q Consensus 173 ~~~~~~~~~~GG~~i~~~l~~~l~~ 197 (314)
+.....-.++||.++++.|.+++..
T Consensus 223 vkat~gd~~lGGedf~~~l~~h~~~ 247 (620)
T KOG0101|consen 223 VKATAGDTHLGGEDFDNKLVNHFAA 247 (620)
T ss_pred hhhhcccccccchhhhHHHHHHHHH
Confidence 2333335689999999988876643
No 50
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.35 E-value=2.3e-05 Score=68.21 Aligned_cols=57 Identities=19% Similarity=0.213 Sum_probs=45.1
Q ss_pred EEEEecCCCceEEEEeeCCeeccccceEecchHHHHHHHHHHHHHhcCCccccccHHHHHHHHHhhcc
Q 037845 152 GIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLA 219 (314)
Q Consensus 152 ~lVVDiG~~~t~i~pV~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~ 219 (314)
.+|+|||+..|++..+.+|+++.. +..++||+.+++.+.+...- +..-++++|.+..
T Consensus 195 vav~~Igat~s~l~vi~~gk~ly~--r~~~~g~~Qlt~~i~r~~~L---------~~~~a~~~k~~~~ 251 (354)
T COG4972 195 VAVFDIGATSSELLVIQDGKILYT--REVPVGTDQLTQEIQRAYSL---------TEEKAEEIKRGGT 251 (354)
T ss_pred heeeeecccceEEEEEECCeeeeE--eeccCcHHHHHHHHHHHhCC---------ChhHhHHHHhCCC
Confidence 459999999999999999999863 47899999999998876543 4455666666533
No 51
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=1.2e-05 Score=76.65 Aligned_cols=94 Identities=17% Similarity=0.204 Sum_probs=72.9
Q ss_pred CceEEeeCCCCChHHHHHHHHHHhhhCCCCeeeechhhhHhhhhcC----------CCeEEEEecCCCceEEEEeeCCee
Q 037845 103 HPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASG----------RTTGIVLDSGDGVSHTVPIYEGYA 172 (314)
Q Consensus 103 ~~vll~~~~~~~~~~~~~~~~~lfe~~~~~~v~~~~~~~~a~~~~g----------~~t~lVVDiG~~~t~i~pV~~g~~ 172 (314)
..++++.|+++....|+.+++.. .-.|..-++++++..++|..+| .+.-++-|+|+++|+.+-|.--.+
T Consensus 159 kd~ViTVP~~F~qaeR~all~Aa-~iagl~vLqLind~~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~Ativsy~~v 237 (902)
T KOG0104|consen 159 KDMVITVPPFFNQAERRALLQAA-QIAGLNVLQLINDGTAVALNYGVFRRKEINETPQHYIFYDMGSGSTSATIVSYQLV 237 (902)
T ss_pred hheEEeCCcccCHHHHHHHHHHH-HhcCchhhhhhccchHHHhhhhhhccccCCCCceEEEEEecCCCceeEEEEEEEee
Confidence 46899999999999999887765 3567888999999999999887 457788999999999988742111
Q ss_pred c--------c-----ccceEecchHHHHHHHHHHHHHh
Q 037845 173 L--------P-----HAILRLDLAGRDLTDALMKILTE 197 (314)
Q Consensus 173 ~--------~-----~~~~~~~~GG~~i~~~l~~~l~~ 197 (314)
- + ...-....||..++..|+.+|..
T Consensus 238 ~~k~~g~~~p~i~~~gvGfd~tLGG~e~~~rLr~~l~~ 275 (902)
T KOG0104|consen 238 KTKEQGGKQPQIQVLGVGFDRTLGGLEMTMRLRDHLAN 275 (902)
T ss_pred ccccccCccceEEEEeeccCCccchHHHHHHHHHHHHH
Confidence 1 1 01113468999999999998875
No 52
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=98.20 E-value=6.5e-06 Score=73.71 Aligned_cols=72 Identities=19% Similarity=0.240 Sum_probs=51.7
Q ss_pred hCCCCeeeechhhhHhhhhc-----CCCeEEEEecCCCceEEEEeeCCeecc-ccceEecchHHHHHHHHHHHHHhcC
Q 037845 128 TFNVPAMYVAIQAVLSLYAS-----GRTTGIVLDSGDGVSHTVPIYEGYALP-HAILRLDLAGRDLTDALMKILTERG 199 (314)
Q Consensus 128 ~~~~~~v~~~~~~~~a~~~~-----g~~t~lVVDiG~~~t~i~pV~~g~~~~-~~~~~~~~GG~~i~~~l~~~l~~~~ 199 (314)
.+.+..|.+.|++++|.|.. ...+.+|||+|+.+|.++.|.++.... ......++|-..+.+.+.+.|...+
T Consensus 137 ~i~I~~V~V~PQ~~~A~~~~~~~~~~~~~~lVVDIGG~T~Dv~~v~~~~~~~~~~~~~~~~Gvs~~~~~I~~~l~~~~ 214 (318)
T PF06406_consen 137 TITIKDVEVFPQSVGAVFDALMDLDEDESVLVVDIGGRTTDVAVVRGGLPDISKCSGTPEIGVSDLYDAIAQALRSAG 214 (318)
T ss_dssp --EEEEEEEEESSHHHHHHHHHTS-TTSEEEEEEE-SS-EEEEEEEGGG--EEEEEEETTSSTHHHHHHHHHHTT--S
T ss_pred eEEEeeEEEEcccHHHHHHHHHhhcccCcEEEEEcCCCeEEeeeecCCccccchhccCCchhHHHHHHHHHHHHHHhc
Confidence 34467999999999998874 236789999999999999887765443 3333568899999999999887643
No 53
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=97.99 E-value=3.8e-05 Score=70.58 Aligned_cols=164 Identities=16% Similarity=0.171 Sum_probs=97.0
Q ss_pred CCCCCCCCcEEEeCCCccEEEEEeCC----CCCCccCCceeeecCCCCccccCCCcccccccccccccCCceeeCcccCC
Q 037845 1 MADAEDIQPLVCDNGTGMVKAGFAGD----DAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHG 76 (314)
Q Consensus 1 ~~~~~~~~~vViD~Gs~~~k~G~ag~----~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g 76 (314)
||. ++-..|-||+||.+++.=||.= ..+.+..|-+. +-|...-.++. -...|+...
T Consensus 1 ~~~-~~i~SVGIDIGTsTTqlvfSrl~l~n~a~~~~vpr~~------------------I~dkev~yrS~-i~fTPl~~~ 60 (475)
T PRK10719 1 MMT-EELLSVGIDIGTTTTQVIFSRLELENRASVFQVPRIE------------------IIDKEIIYRSP-IYFTPLLKQ 60 (475)
T ss_pred CCc-cEEEEEEEeccCceEEEEEEEEEEecccccccCceEE------------------EeeeEEEEecC-ceecCCCCC
Confidence 443 5567899999999999877721 12222222211 11100001111 235688766
Q ss_pred ccCCHHHHHHHHHHhcccccccCCCC--CceEEeeCCCCChHHHHHHHHHHh----------hhCCCCeeeechhhhHhh
Q 037845 77 IVSNWDDMEKIWHHTFYNELRVAPEE--HPVLLTEAPLNPKANREKMTQIMF----------ETFNVPAMYVAIQAVLSL 144 (314)
Q Consensus 77 ~i~~~~~le~~l~~~~~~~l~~~~~~--~~vll~~~~~~~~~~~~~~~~~lf----------e~~~~~~v~~~~~~~~a~ 144 (314)
..-|-+.+..+...-| +.-++.+++ ..+.++.........-+++++.+= -.+++.++.. +++|+
T Consensus 61 ~~ID~~~i~~~V~~ey-~~Agi~~~die~~ahIITg~~~~~~Nl~~~v~~~~~~~gdfVVA~AG~~le~iva---~~ASg 136 (475)
T PRK10719 61 GEIDEAAIKELIEEEY-QKAGIAPESIDSGAVIITGETARKENAREVVMALSGSAGDFVVATAGPDLESIIA---GKGAG 136 (475)
T ss_pred ccccHHHHHHHHHHHH-HHcCCCHHHccccEEEEEechhHHHHHHHHHHHhcccccceeeeccCccHHHhhh---HHHhh
Confidence 6779999999998887 567777753 445555444444444444444311 0112222211 23222
Q ss_pred h---hcC-CCeEEEEecCCCceEEEEeeCCeeccccceEecchHHHHHHH
Q 037845 145 Y---ASG-RTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDA 190 (314)
Q Consensus 145 ~---~~g-~~t~lVVDiG~~~t~i~pV~~g~~~~~~~~~~~~GG~~i~~~ 190 (314)
. +-- ....++||+|+++|+++.+.+|.++... .+++||++++..
T Consensus 137 ~avLseEke~gVa~IDIGgGTT~iaVf~~G~l~~T~--~l~vGG~~IT~D 184 (475)
T PRK10719 137 AQTLSEERNTRVLNIDIGGGTANYALFDAGKVIDTA--CLNVGGRLIETD 184 (475)
T ss_pred HHHhhhhccCceEEEEeCCCceEEEEEECCEEEEEE--EEecccceEEEC
Confidence 2 222 3688999999999999999999888644 589999877654
No 54
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=97.95 E-value=2.4e-06 Score=68.98 Aligned_cols=63 Identities=17% Similarity=0.155 Sum_probs=55.8
Q ss_pred hhhCCCCeeeechhhhHhhhhcCCCeEEEEecCCCceEEEEeeCCeeccccceEecchHHHHHHH
Q 037845 126 FETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDA 190 (314)
Q Consensus 126 fe~~~~~~v~~~~~~~~a~~~~g~~t~lVVDiG~~~t~i~pV~~g~~~~~~~~~~~~GG~~i~~~ 190 (314)
.|..|....+.+++|.++++-.+.+.|-|||+|.++|-|+-+-+|.++..+ --+.||.+++--
T Consensus 116 iESAGlevl~vlDEPTAaa~vL~l~dg~VVDiGGGTTGIsi~kkGkViy~A--DEpTGGtHmtLv 178 (277)
T COG4820 116 IESAGLEVLHVLDEPTAAADVLQLDDGGVVDIGGGTTGISIVKKGKVIYSA--DEPTGGTHMTLV 178 (277)
T ss_pred ecccCceeeeecCCchhHHHHhccCCCcEEEeCCCcceeEEEEcCcEEEec--cCCCCceeEEEE
Confidence 578899999999999999999999999999999999999999999998755 367888776633
No 55
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=0.00064 Score=64.71 Aligned_cols=96 Identities=13% Similarity=0.161 Sum_probs=74.1
Q ss_pred CCCceEEeeCCCCChHHHHHHHHHHhhhCCCCeeeechhhhHhhhhcC------------CCeEEEEecCCCceEEEEee
Q 037845 101 EEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASG------------RTTGIVLDSGDGVSHTVPIY 168 (314)
Q Consensus 101 ~~~~vll~~~~~~~~~~~~~~~~~lfe~~~~~~v~~~~~~~~a~~~~g------------~~t~lVVDiG~~~t~i~pV~ 168 (314)
.-.+++|..|.+++..+|..+++..= ..|+.-+-++.+-.+++.++| ..+-+.||+||+.++++.+.
T Consensus 136 ~v~DcvIavP~~FTd~qRravldAA~-iagLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~~q~si~a 214 (727)
T KOG0103|consen 136 PVSDCVIAVPSYFTDSQRRAVLDAAR-IAGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHSSYQVSIAA 214 (727)
T ss_pred CCCCeeEeccccccHHHHHHHHhHHh-hcCccceeeeecchHhHhhcccccccCCCcccCcceEEEEecccccceeeeee
Confidence 34579999999999999998888763 578888999999999988887 24578899999998877553
Q ss_pred --CCeecc-ccceEecchHHHHHHHHHHHHHh
Q 037845 169 --EGYALP-HAILRLDLAGRDLTDALMKILTE 197 (314)
Q Consensus 169 --~g~~~~-~~~~~~~~GG~~i~~~l~~~l~~ 197 (314)
-|..-. .+.-...+||+++++.|.+.+..
T Consensus 215 F~kG~lkvl~ta~D~~lGgr~fDe~L~~hfa~ 246 (727)
T KOG0103|consen 215 FTKGKLKVLATAFDRKLGGRDFDEALIDHFAK 246 (727)
T ss_pred eccCcceeeeeecccccccchHHHHHHHHHHH
Confidence 443222 22223479999999999988865
No 56
>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=0.00081 Score=62.31 Aligned_cols=94 Identities=18% Similarity=0.186 Sum_probs=72.5
Q ss_pred CceEEeeCCCCChHHHHHHHHHHhhhCCCCeeeechhhhHhhhhcCC-----CeEEEEecCCCceEEE--EeeCCeec-c
Q 037845 103 HPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTV--PIYEGYAL-P 174 (314)
Q Consensus 103 ~~vll~~~~~~~~~~~~~~~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~t~lVVDiG~~~t~i~--pV~~g~~~-~ 174 (314)
...+++.|.++...+|. .++-+..-++...+-.+++|.+|+.++|. ..-.|.|+|.++..|. -+.+|.-. .
T Consensus 161 ~~avvtvpAyfndsqRq-aTkdag~iagl~vlrvineptaaalaygld~k~~g~iaV~dLgggtfdisilei~~gvfevk 239 (640)
T KOG0102|consen 161 KNAVITVPAYFNDSQRQ-ATKDAGQIAGLNVLRVINEPTAAALAYGLDKKEDGVIAVFDLGGGTFDISILEIEDGVFEVK 239 (640)
T ss_pred hheeeccHHHHhHHHHH-HhHhhhhhccceeeccCCccchhHHhhcccccCCCceEEEEcCCceeeeeeehhccceeEEE
Confidence 35688888898888887 77777777888888899999999998874 3557889999987665 45677543 3
Q ss_pred ccceEecchHHHHHHHHHHHHHh
Q 037845 175 HAILRLDLAGRDLTDALMKILTE 197 (314)
Q Consensus 175 ~~~~~~~~GG~~i~~~l~~~l~~ 197 (314)
.+......||.+++..+..++-.
T Consensus 240 sTngdtflggedfd~~~~~~~v~ 262 (640)
T KOG0102|consen 240 STNGDTHLGGEDFDNALVRFIVS 262 (640)
T ss_pred eccCccccChhHHHHHHHHHHHH
Confidence 34445688999999999887754
No 57
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=97.17 E-value=0.0093 Score=51.46 Aligned_cols=53 Identities=15% Similarity=0.100 Sum_probs=36.5
Q ss_pred hhhhcCCCeEEEEecCCCceEEEEeeCCeeccc-cceEecchHHHHHHHHHHHHH
Q 037845 143 SLYASGRTTGIVLDSGDGVSHTVPIYEGYALPH-AILRLDLAGRDLTDALMKILT 196 (314)
Q Consensus 143 a~~~~g~~t~lVVDiG~~~t~i~pV~~g~~~~~-~~~~~~~GG~~i~~~l~~~l~ 196 (314)
+.+-... ...|||+|.+.|.++-+-+|.+... ....+..|+-.+.+.+.+.|.
T Consensus 85 ~~~~~~~-~~~vidiGgqd~k~i~~~~g~~~~~~~n~~ca~Gtg~f~e~~a~~l~ 138 (248)
T TIGR00241 85 ANYLAPE-ARGVIDIGGQDSKVIKIDDGKVDDFTMNDKCAAGTGRFLEVTARRLG 138 (248)
T ss_pred HHHHCCC-CCEEEEecCCeeEEEEECCCcEeeeeecCcccccccHHHHHHHHHcC
Confidence 3343343 3459999999999999999987632 223467787777777666554
No 58
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=97.10 E-value=0.0046 Score=57.16 Aligned_cols=172 Identities=19% Similarity=0.269 Sum_probs=105.1
Q ss_pred CCcEEEeCCCccEEEEEeC---C-CCCCccCCceeeecCCCCccccCCCcccccccccccccCCceeeCcccCCccCCHH
Q 037845 7 IQPLVCDNGTGMVKAGFAG---D-DAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWD 82 (314)
Q Consensus 7 ~~~vViD~Gs~~~k~G~ag---~-~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~~~~ 82 (314)
...|-||+||.|++.=||. + ..+.+..|-+.-..+ .-+| ++. -...|+.....-|-+
T Consensus 3 i~SVGIDIGTSTTQlvfSrl~l~n~a~~~~vPri~I~dk----------eViY--------rS~-I~fTPl~~~~~ID~~ 63 (473)
T PF06277_consen 3 ILSVGIDIGTSTTQLVFSRLTLENRASGFSVPRIEIVDK----------EVIY--------RSP-IYFTPLLSQTEIDAE 63 (473)
T ss_pred eEEEEEeecCCceeEEEEEeEEEeccCCCccceEEEecc----------EEEe--------cCC-ccccCCCCCCccCHH
Confidence 3568999999999987773 1 122222222211100 1111 111 235688877677999
Q ss_pred HHHHHHHHhcccccccCCCC--C-ceEEeeCCCCChHHHHHHHHHHhhhCCC---CeeeechhhhHhhhhcC--------
Q 037845 83 DMEKIWHHTFYNELRVAPEE--H-PVLLTEAPLNPKANREKMTQIMFETFNV---PAMYVAIQAVLSLYASG-------- 148 (314)
Q Consensus 83 ~le~~l~~~~~~~l~~~~~~--~-~vll~~~~~~~~~~~~~~~~~lfe~~~~---~~v~~~~~~~~a~~~~g-------- 148 (314)
++.++...-| +.-++.|++ . .|+++-. ...++.-+.+.+.|-+..|= ..-==--++++|..++|
T Consensus 64 al~~iv~~eY-~~Agi~p~~I~TGAVIITGE-TArKeNA~~v~~~Ls~~aGDFVVATAGPdLEsiiAgkGsGA~~~S~~~ 141 (473)
T PF06277_consen 64 ALKEIVEEEY-RKAGITPEDIDTGAVIITGE-TARKENAREVLHALSGFAGDFVVATAGPDLESIIAGKGSGAAALSKEH 141 (473)
T ss_pred HHHHHHHHHH-HHcCCCHHHCccccEEEecc-hhhhhhHHHHHHHHHHhcCCEEEEccCCCHHHHHhccCccHHHHhhhh
Confidence 9999999887 667888764 3 4666643 33344444455555554431 00001236777777776
Q ss_pred CCeEEEEecCCCceEEEEeeCCeeccccceEecchHH-----------HHHHHHHHHHHhcCCc
Q 037845 149 RTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGR-----------DLTDALMKILTERGYM 201 (314)
Q Consensus 149 ~~t~lVVDiG~~~t~i~pV~~g~~~~~~~~~~~~GG~-----------~i~~~l~~~l~~~~~~ 201 (314)
..+-+=+|||.++|.++.+-+|.++..+. +++||+ .+...++.++.+.+.+
T Consensus 142 ~~~V~NiDIGGGTtN~avf~~G~v~~T~c--l~IGGRLi~~d~~g~i~yis~~~~~l~~~~~~~ 203 (473)
T PF06277_consen 142 HTVVANIDIGGGTTNIAVFDNGEVIDTAC--LDIGGRLIEFDPDGRITYISPPIQRLLEELGLE 203 (473)
T ss_pred CCeEEEEEeCCCceeEEEEECCEEEEEEE--EeeccEEEEEcCCCcEEEECHHHHHHHHHhCCC
Confidence 23445579999999999999999997553 789996 4555566666666554
No 59
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=96.24 E-value=0.049 Score=51.94 Aligned_cols=84 Identities=15% Similarity=0.170 Sum_probs=55.1
Q ss_pred eEEeeCCCCChHHHHHHHHHHhhhCCCCeeeechhhhHhhh---hc-----CCCeEEEEecCCCceEEEEeeCCeecccc
Q 037845 105 VLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLY---AS-----GRTTGIVLDSGDGVSHTVPIYEGYALPHA 176 (314)
Q Consensus 105 vll~~~~~~~~~~~~~~~~~lfe~~~~~~v~~~~~~~~a~~---~~-----g~~t~lVVDiG~~~t~i~pV~~g~~~~~~ 176 (314)
.++..+..-.-..++.+++.+.+..|++ |-+++..-=|.| +. ...+++|||||+++|.++.+-+|.+..
T Consensus 80 ~~vATsAvReA~N~~~fl~~i~~~tGl~-ievIsG~eEA~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~~~~~~-- 156 (496)
T PRK11031 80 RVVATATLRLAVNADEFLAKAQEILGCP-VQVISGEEEARLIYQGVAHTTGGADQRLVVDIGGASTELVTGTGAQATS-- 156 (496)
T ss_pred EEEEeHHHHcCcCHHHHHHHHHHHHCCC-eEEeCHHHHHHHHHHhhhhccCCCCCEEEEEecCCeeeEEEecCCceee--
Confidence 3444455656666777888888888875 334432222222 11 124689999999999999998887654
Q ss_pred ceEecchHHHHHHHH
Q 037845 177 ILRLDLAGRDLTDAL 191 (314)
Q Consensus 177 ~~~~~~GG~~i~~~l 191 (314)
...+|+|.-.+++.+
T Consensus 157 ~~Sl~lG~vrl~e~f 171 (496)
T PRK11031 157 LFSLSMGCVTWLERY 171 (496)
T ss_pred eeEEeccchHHHHHh
Confidence 346899987766443
No 60
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=96.06 E-value=0.043 Score=48.80 Aligned_cols=85 Identities=16% Similarity=0.122 Sum_probs=56.4
Q ss_pred eEEeeCCCCChHHHHHHHHHHhhhCCCCeeeechhhhHhhh---h----cCCCeEEEEecCCCceEEEEeeCCeeccccc
Q 037845 105 VLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLY---A----SGRTTGIVLDSGDGVSHTVPIYEGYALPHAI 177 (314)
Q Consensus 105 vll~~~~~~~~~~~~~~~~~lfe~~~~~~v~~~~~~~~a~~---~----~g~~t~lVVDiG~~~t~i~pV~~g~~~~~~~ 177 (314)
.++....+..-..++.+++.+.+..|++ +-++...-=|.| + ....+++++|+|+++|.++-+.++.+.. .
T Consensus 74 ~~vaTsa~R~A~N~~~~~~~i~~~tgi~-i~visg~eEa~l~~~gv~~~~~~~~~~v~DiGGGSte~~~~~~~~~~~--~ 150 (300)
T TIGR03706 74 RAVATAALRDAKNGPEFLREAEAILGLP-IEVISGEEEARLIYLGVAHTLPIADGLVVDIGGGSTELILGKDFEPGE--G 150 (300)
T ss_pred EEEEcHHHHcCCCHHHHHHHHHHHHCCC-eEEeChHHHHHHHHHHHHhCCCCCCcEEEEecCCeEEEEEecCCCEeE--E
Confidence 3444445555566777888888777764 445443332222 1 1234579999999999999988887653 3
Q ss_pred eEecchHHHHHHHHH
Q 037845 178 LRLDLAGRDLTDALM 192 (314)
Q Consensus 178 ~~~~~GG~~i~~~l~ 192 (314)
..+|+|.-.+++.+.
T Consensus 151 ~Sl~lG~vrl~e~f~ 165 (300)
T TIGR03706 151 VSLPLGCVRLTEQFF 165 (300)
T ss_pred EEEccceEEhHHhhC
Confidence 468999987777653
No 61
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.19 E-value=0.048 Score=51.55 Aligned_cols=78 Identities=21% Similarity=0.224 Sum_probs=46.5
Q ss_pred eCCCCChHHHHHHHHHHhhhCCCCeeeech---hhhHhhhh----cC-CCeEEEEecCCCceEEEEeeCCeeccccceEe
Q 037845 109 EAPLNPKANREKMTQIMFETFNVPAMYVAI---QAVLSLYA----SG-RTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180 (314)
Q Consensus 109 ~~~~~~~~~~~~~~~~lfe~~~~~~v~~~~---~~~~a~~~----~g-~~t~lVVDiG~~~t~i~pV~~g~~~~~~~~~~ 180 (314)
...+-.-.......+.+-+.+|++ +.++. ++-++.++ .+ ...++|+|+|.++|.++-+-+..+.. ...+
T Consensus 81 TsA~R~A~N~~eFl~rv~~~~G~~-ievIsGeeEArl~~lGv~~~~~~~~~~lv~DIGGGStEl~~g~~~~~~~--~~Sl 157 (492)
T COG0248 81 TSALRDAPNGDEFLARVEKELGLP-IEVISGEEEARLIYLGVASTLPRKGDGLVIDIGGGSTELVLGDNFEIGL--LISL 157 (492)
T ss_pred hHHHHcCCCHHHHHHHHHHHhCCc-eEEeccHHHHHHHHHHHHhcCCCCCCEEEEEecCCeEEEEEecCCccce--eEEe
Confidence 344434444455555556667775 33333 33333332 23 78999999999999998887665543 3356
Q ss_pred cchHHHHHH
Q 037845 181 DLAGRDLTD 189 (314)
Q Consensus 181 ~~GG~~i~~ 189 (314)
|+|.-.+++
T Consensus 158 ~~G~v~lt~ 166 (492)
T COG0248 158 PLGCVRLTE 166 (492)
T ss_pred ecceEEeeh
Confidence 777543333
No 62
>PRK10854 exopolyphosphatase; Provisional
Probab=95.04 E-value=0.12 Score=49.53 Aligned_cols=82 Identities=10% Similarity=0.050 Sum_probs=52.3
Q ss_pred eEEeeCCCCChHHHHHHHHHHhhhCCCCeeeechhhhHhhh---hc-----CCCeEEEEecCCCceEEEEeeCCeecccc
Q 037845 105 VLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLY---AS-----GRTTGIVLDSGDGVSHTVPIYEGYALPHA 176 (314)
Q Consensus 105 vll~~~~~~~~~~~~~~~~~lfe~~~~~~v~~~~~~~~a~~---~~-----g~~t~lVVDiG~~~t~i~pV~~g~~~~~~ 176 (314)
.++....+-.-..+..+++.+.+..|++ |-++...-=|.| +. ...+++|||||+++|.++-+-+|.+...
T Consensus 85 ~~vATsAlReA~N~~~fl~~i~~~tGl~-i~vIsG~EEA~l~~~gv~~~l~~~~~~lvvDIGGGStEl~~~~~~~~~~~- 162 (513)
T PRK10854 85 CIVGTHTLRQALNATDFLKRAEKVIPYP-IEIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGENFEPILV- 162 (513)
T ss_pred EEEehHHHHcCcCHHHHHHHHHHHHCCC-eEEeCHHHHHHHHHhhhhcccCCCCCeEEEEeCCCeEEEEEecCCCeeEe-
Confidence 3444455656666777888888888875 344443222222 11 1246899999999999999988865542
Q ss_pred ceEecchHHHHHH
Q 037845 177 ILRLDLAGRDLTD 189 (314)
Q Consensus 177 ~~~~~~GG~~i~~ 189 (314)
...++|.-.+++
T Consensus 163 -~S~~lG~vrl~e 174 (513)
T PRK10854 163 -ESRRMGCVSFAQ 174 (513)
T ss_pred -EEEecceeeHHh
Confidence 245777755554
No 63
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=94.50 E-value=0.24 Score=43.74 Aligned_cols=155 Identities=20% Similarity=0.253 Sum_probs=84.1
Q ss_pred CCCCCcEEEeCCCccEEEEEeC---------CCCCCccCCceeeecCCCCccccCCCcccccccccccccCCceeeCccc
Q 037845 4 AEDIQPLVCDNGTGMVKAGFAG---------DDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIE 74 (314)
Q Consensus 4 ~~~~~~vViD~Gs~~~k~G~ag---------~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~ 74 (314)
.++...|-||+|+.++.+=|+. ...||+.+-. ++ -..++. -+..|+.
T Consensus 2 te~ilSVGIDiGTsTTQvifS~lel~Nmas~~~VPri~ii~-----kd------------------i~~rS~-i~FTPv~ 57 (473)
T COG4819 2 TEQILSVGIDIGTSTTQVIFSKLELVNMASVSQVPRIEIIK-----KD------------------ISWRSP-IFFTPVD 57 (473)
T ss_pred cceeeeeeeeccCceeeeeeeeeEEeecccccccceEEEEe-----cc------------------eeeecc-eeeeeec
Confidence 4566789999999999987762 2234433210 00 001111 2345655
Q ss_pred CCccCCHHHHHHHHHHhcccccccCCCC---CceEEeeCCCCChHHHHHHHHHHhhhCC---CCeeeechhhhHhhhhcC
Q 037845 75 HGIVSNWDDMEKIWHHTFYNELRVAPEE---HPVLLTEAPLNPKANREKMTQIMFETFN---VPAMYVAIQAVLSLYASG 148 (314)
Q Consensus 75 ~g~i~~~~~le~~l~~~~~~~l~~~~~~---~~vll~~~~~~~~~~~~~~~~~lfe~~~---~~~v~~~~~~~~a~~~~g 148 (314)
..--.|.+++.++...=+ ..-++.|++ -.++++-.+-..+..|. .+..+-..+| +..--=.-+++.|--++|
T Consensus 58 ~q~~id~~alk~~v~eeY-~~AGi~pesi~sGAvIITGEtArk~NA~~-vl~alSg~aGDFVVAtAGPdLESiIAGkGaG 135 (473)
T COG4819 58 KQGGIDEAALKKLVLEEY-QAAGIAPESIDSGAVIITGETARKRNARP-VLMALSGSAGDFVVATAGPDLESIIAGKGAG 135 (473)
T ss_pred ccCCccHHHHHHHHHHHH-HHcCCChhccccccEEEeccccccccchH-HHHHhhhcccceEEEecCCCHHHHhccCCcc
Confidence 444447778887776665 446677653 35666654443333333 2222222222 111111113333333333
Q ss_pred ------CCeEEE--EecCCCceEEEEeeCCeeccccceEecchHHH
Q 037845 149 ------RTTGIV--LDSGDGVSHTVPIYEGYALPHAILRLDLAGRD 186 (314)
Q Consensus 149 ------~~t~lV--VDiG~~~t~i~pV~~g~~~~~~~~~~~~GG~~ 186 (314)
+..++| +|||.++|..+-+-.|.+...+. +++||+.
T Consensus 136 A~t~Seqr~t~v~NlDIGGGTtN~slFD~Gkv~dTaC--LdiGGRL 179 (473)
T COG4819 136 AQTLSEQRLTRVLNLDIGGGTTNYSLFDAGKVSDTAC--LDIGGRL 179 (473)
T ss_pred ccchhhhhceEEEEEeccCCccceeeeccccccccee--eecCcEE
Confidence 223333 69999999999999998886554 7899963
No 64
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=93.61 E-value=0.36 Score=36.51 Aligned_cols=58 Identities=21% Similarity=0.262 Sum_probs=40.3
Q ss_pred EEEecCCCceEEEEeeCCeeccccceEecch--------HHHHH--HHHHHHHHhcCCccccccHHHHHHHH-Hhhcccc
Q 037845 153 IVLDSGDGVSHTVPIYEGYALPHAILRLDLA--------GRDLT--DALMKILTERGYMFTTTAEREIVRDM-KEKLAYV 221 (314)
Q Consensus 153 lVVDiG~~~t~i~pV~~g~~~~~~~~~~~~G--------G~~i~--~~l~~~l~~~~~~~~~~~~~~~~~~i-k~~~~~~ 221 (314)
++||+|+++|.++....+.... ...+++| +.+++ +.+.+-++. ..+.+|++ |.++..+
T Consensus 2 ~~iDiGs~~~~~~i~~~~~~~~--~~vl~~g~~~s~gi~~g~Itd~~~i~~~i~~---------a~~~AE~~~k~~i~~v 70 (120)
T PF14450_consen 2 VVIDIGSSKTKVAIAEDGSDGY--IRVLGVGEVPSKGIKGGHITDIEDISKAIKI---------AIEEAERLAKCEIGSV 70 (120)
T ss_dssp EEEEE-SSSEEEEEEETTEEEE--EEEES----------HHHHH--HHHHHHHT-----------HHHHHHH-HHHH--S
T ss_pred EEEEcCCCcEEEEEEEeCCCCc--EEEEEEecccccccCCCEEEEHHHHHHHHHH---------HHHHHHHHhCCeeeEE
Confidence 6899999999999888876554 5568999 99999 888888775 45667777 6665543
No 65
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=93.10 E-value=0.69 Score=40.65 Aligned_cols=26 Identities=15% Similarity=0.202 Sum_probs=21.2
Q ss_pred CCeEEEEecCCCceEEEEe-eCCeecc
Q 037845 149 RTTGIVLDSGDGVSHTVPI-YEGYALP 174 (314)
Q Consensus 149 ~~t~lVVDiG~~~t~i~pV-~~g~~~~ 174 (314)
.....|+|||.+-+.++-+ -+|.+..
T Consensus 124 p~v~tIIDIGGQDsK~I~~d~~G~v~d 150 (293)
T TIGR03192 124 NAVRTILDMGGQDCKAIHCDEKGKVTN 150 (293)
T ss_pred CCCCEEEEeCCCceEEEEEcCCCcEee
Confidence 5678999999999999988 5676554
No 66
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=92.38 E-value=0.15 Score=44.99 Aligned_cols=34 Identities=21% Similarity=0.232 Sum_probs=24.4
Q ss_pred hHhhh-hcCCCeEEEEecCCCceEEEEeeCCeecc
Q 037845 141 VLSLY-ASGRTTGIVLDSGDGVSHTVPIYEGYALP 174 (314)
Q Consensus 141 ~~a~~-~~g~~t~lVVDiG~~~t~i~pV~~g~~~~ 174 (314)
..+++ ..|..++++||+|..+|+|++|.||.+..
T Consensus 67 ~ga~~~~~g~~~~i~vDmGGTTtDi~~i~~G~p~~ 101 (290)
T PF01968_consen 67 IGAAARLTGLENAIVVDMGGTTTDIALIKDGRPEI 101 (290)
T ss_dssp HHHHH--HT-SSEEEEEE-SS-EEEEEEETTEE--
T ss_pred hhhhhhcCCCCCEEEEeCCCCEEEEEEEECCeeec
Confidence 44455 56889999999999999999999999864
No 67
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=92.31 E-value=0.63 Score=42.70 Aligned_cols=25 Identities=16% Similarity=0.336 Sum_probs=20.9
Q ss_pred CeEEEEecCCCceEEEEeeCCeecc
Q 037845 150 TTGIVLDSGDGVSHTVPIYEGYALP 174 (314)
Q Consensus 150 ~t~lVVDiG~~~t~i~pV~~g~~~~ 174 (314)
....|+|||.+-+.++-+-+|.+..
T Consensus 241 ~v~TIIDIGGQDsK~I~l~~G~v~d 265 (404)
T TIGR03286 241 GPATVIDIGGMDNKAISVWDGIPDN 265 (404)
T ss_pred CCcEEEEeCCCceEEEEEcCCceee
Confidence 5789999999999988887886653
No 68
>PRK13321 pantothenate kinase; Reviewed
Probab=91.56 E-value=2.5 Score=36.61 Aligned_cols=18 Identities=33% Similarity=0.471 Sum_probs=15.8
Q ss_pred EEEeCCCccEEEEEeCCC
Q 037845 10 LVCDNGTGMVKAGFAGDD 27 (314)
Q Consensus 10 vViD~Gs~~~k~G~ag~~ 27 (314)
+.||+|..++|+|+..++
T Consensus 3 L~IDIGnT~ik~gl~~~~ 20 (256)
T PRK13321 3 LLIDVGNTNIKLGVFDGD 20 (256)
T ss_pred EEEEECCCeEEEEEEECC
Confidence 789999999999988644
No 69
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=91.01 E-value=2.8 Score=35.97 Aligned_cols=18 Identities=17% Similarity=0.289 Sum_probs=15.4
Q ss_pred EEEeCCCccEEEEEeCCC
Q 037845 10 LVCDNGTGMVKAGFAGDD 27 (314)
Q Consensus 10 vViD~Gs~~~k~G~ag~~ 27 (314)
++||+|-.++++|+..++
T Consensus 2 L~iDiGNT~i~~g~~~~~ 19 (243)
T TIGR00671 2 LLIDVGNTRIVFALNSGN 19 (243)
T ss_pred EEEEECCCcEEEEEEECC
Confidence 689999999999977554
No 70
>PRK13324 pantothenate kinase; Reviewed
Probab=90.69 E-value=5.2 Score=34.70 Aligned_cols=18 Identities=28% Similarity=0.379 Sum_probs=15.4
Q ss_pred cEEEeCCCccEEEEEeCC
Q 037845 9 PLVCDNGTGMVKAGFAGD 26 (314)
Q Consensus 9 ~vViD~Gs~~~k~G~ag~ 26 (314)
.+.||+|-.++|+|+..+
T Consensus 2 iL~iDiGNT~ik~gl~~~ 19 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFDG 19 (258)
T ss_pred EEEEEeCCCceEEEEEEC
Confidence 478999999999998753
No 71
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.
Probab=89.72 E-value=3.9 Score=34.07 Aligned_cols=18 Identities=28% Similarity=0.348 Sum_probs=14.9
Q ss_pred EEEeCCCccEEEEEeCCC
Q 037845 10 LVCDNGTGMVKAGFAGDD 27 (314)
Q Consensus 10 vViD~Gs~~~k~G~ag~~ 27 (314)
++||+|-.++|+|+..++
T Consensus 2 L~iDiGNT~ik~~~~~~~ 19 (206)
T PF03309_consen 2 LLIDIGNTRIKWALFDGD 19 (206)
T ss_dssp EEEEE-SSEEEEEEEETT
T ss_pred EEEEECCCeEEEEEEECC
Confidence 789999999999988655
No 72
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=89.43 E-value=4.6 Score=34.74 Aligned_cols=18 Identities=17% Similarity=0.137 Sum_probs=15.6
Q ss_pred cEEEeCCCccEEEEEeCC
Q 037845 9 PLVCDNGTGMVKAGFAGD 26 (314)
Q Consensus 9 ~vViD~Gs~~~k~G~ag~ 26 (314)
-++||+|-++++.|+..+
T Consensus 2 ~L~iDiGNT~~~~a~~~~ 19 (251)
T COG1521 2 LLLIDIGNTRIVFALYEG 19 (251)
T ss_pred eEEEEeCCCeEEEEEecC
Confidence 479999999999998863
No 73
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=88.30 E-value=0.88 Score=40.04 Aligned_cols=84 Identities=18% Similarity=0.258 Sum_probs=55.2
Q ss_pred EEeeCCCCChHHHHHHHHHHhhhCCCCeeeechhhh---Hh----hhhc-CCCeEEEEecCCCceEEEEeeCCeeccccc
Q 037845 106 LLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAV---LS----LYAS-GRTTGIVLDSGDGVSHTVPIYEGYALPHAI 177 (314)
Q Consensus 106 ll~~~~~~~~~~~~~~~~~lfe~~~~~~v~~~~~~~---~a----~~~~-g~~t~lVVDiG~~~t~i~pV~~g~~~~~~~ 177 (314)
.+....+..-..+..+++.+.+..|++ +.++...- ++ ..+. ...+++|+|+|+++|.++.+.+|.+.. .
T Consensus 61 ~vATsA~R~A~N~~~~~~~i~~~tGi~-i~iIsgeeEa~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~~~~~~--~ 137 (285)
T PF02541_consen 61 AVATSALREAKNSDEFLDRIKKETGID-IEIISGEEEARLSFLGVLSSLPPDKNGLVIDIGGGSTELILFENGKVVF--S 137 (285)
T ss_dssp EEEEHHHHHSTTHHHHHHHHHHHHSS--EEEE-HHHHHHHHHHHHHHHSTTTSSEEEEEEESSEEEEEEEETTEEEE--E
T ss_pred EEhhHHHHhCcCHHHHHHHHHHHhCCc-eEEecHHHHHHHHHHHHHhhccccCCEEEEEECCCceEEEEEECCeeeE--e
Confidence 344445555566667888888888875 44444221 11 1223 578999999999999999999998775 3
Q ss_pred eEecchHHHHHHHHH
Q 037845 178 LRLDLAGRDLTDALM 192 (314)
Q Consensus 178 ~~~~~GG~~i~~~l~ 192 (314)
..+|+|.-.+++.+.
T Consensus 138 ~Sl~lG~vrl~e~~~ 152 (285)
T PF02541_consen 138 QSLPLGAVRLTERFF 152 (285)
T ss_dssp EEES--HHHHHHHHS
T ss_pred eeeehHHHHHHHHHh
Confidence 468999988877663
No 74
>PRK13318 pantothenate kinase; Reviewed
Probab=87.22 E-value=13 Score=32.20 Aligned_cols=18 Identities=22% Similarity=0.163 Sum_probs=15.6
Q ss_pred cEEEeCCCccEEEEEeCC
Q 037845 9 PLVCDNGTGMVKAGFAGD 26 (314)
Q Consensus 9 ~vViD~Gs~~~k~G~ag~ 26 (314)
.+.||+|..++|+|+..+
T Consensus 2 iL~IDIGnT~iK~al~d~ 19 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYEG 19 (258)
T ss_pred EEEEEECCCcEEEEEEEC
Confidence 478999999999998753
No 75
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=86.97 E-value=0.49 Score=40.39 Aligned_cols=23 Identities=26% Similarity=0.575 Sum_probs=21.5
Q ss_pred CCeEEEEecCCCceEEEEeeCCe
Q 037845 149 RTTGIVLDSGDGVSHTVPIYEGY 171 (314)
Q Consensus 149 ~~t~lVVDiG~~~t~i~pV~~g~ 171 (314)
..+++.||+|+.+|+|+||.+|.
T Consensus 129 ~dsci~VD~GSTTtDIIPi~~ge 151 (330)
T COG1548 129 KDSCILVDMGSTTTDIIPIKDGE 151 (330)
T ss_pred CCceEEEecCCcccceEeecchh
Confidence 56899999999999999999996
No 76
>PRK13326 pantothenate kinase; Reviewed
Probab=86.80 E-value=11 Score=32.76 Aligned_cols=20 Identities=20% Similarity=0.326 Sum_probs=17.0
Q ss_pred CcEEEeCCCccEEEEEeCCC
Q 037845 8 QPLVCDNGTGMVKAGFAGDD 27 (314)
Q Consensus 8 ~~vViD~Gs~~~k~G~ag~~ 27 (314)
.-++||+|-.++|+|+..++
T Consensus 7 ~~L~IDiGNT~ik~glf~~~ 26 (262)
T PRK13326 7 SQLIIDIGNTSISFALYKDN 26 (262)
T ss_pred EEEEEEeCCCeEEEEEEECC
Confidence 34899999999999988664
No 77
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=86.48 E-value=4.8 Score=34.90 Aligned_cols=34 Identities=15% Similarity=0.067 Sum_probs=24.5
Q ss_pred hHhhhhcCCCeEEEEecCCCceEEEEe-eCCeecc
Q 037845 141 VLSLYASGRTTGIVLDSGDGVSHTVPI-YEGYALP 174 (314)
Q Consensus 141 ~~a~~~~g~~t~lVVDiG~~~t~i~pV-~~g~~~~ 174 (314)
...+.........|+|||.+-+.++-+ -+|.+..
T Consensus 88 a~GA~~~~p~~~tIiDIGGQD~K~I~~~~~G~v~~ 122 (262)
T TIGR02261 88 ARGAIYLNPEARAVLDIGALHGRAIRMDERGKVEA 122 (262)
T ss_pred HHHHHHHCCCCCEEEEeCCCceEEEEEcCCCcEee
Confidence 333344455677999999999999888 4676653
No 78
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=85.66 E-value=0.9 Score=40.54 Aligned_cols=29 Identities=17% Similarity=0.351 Sum_probs=25.8
Q ss_pred cCCCeEEEEecCCCceEEEEeeCCeeccc
Q 037845 147 SGRTTGIVLDSGDGVSHTVPIYEGYALPH 175 (314)
Q Consensus 147 ~g~~t~lVVDiG~~~t~i~pV~~g~~~~~ 175 (314)
....+++.+|+|+.+|.|+||.+|.+...
T Consensus 125 ~~~~~~I~~DmGGTTtDi~~i~~G~p~~~ 153 (318)
T TIGR03123 125 KRIPECLFVDMGSTTTDIIPIIDGEVAAK 153 (318)
T ss_pred hcCCCEEEEEcCccceeeEEecCCEeeee
Confidence 34789999999999999999999988754
No 79
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=83.39 E-value=6.7 Score=34.20 Aligned_cols=94 Identities=21% Similarity=0.286 Sum_probs=63.6
Q ss_pred ChHHHHHHHHHHhhhCCCCeeeechhhhHhhhhc----CC-CeEEEEecCCCceEEEEeeCCeeccccceEecchHHHHH
Q 037845 114 PKANREKMTQIMFETFNVPAMYVAIQAVLSLYAS----GR-TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLT 188 (314)
Q Consensus 114 ~~~~~~~~~~~lfe~~~~~~v~~~~~~~~a~~~~----g~-~t~lVVDiG~~~t~i~pV~~g~~~~~~~~~~~~GG~~i~ 188 (314)
.+..-+.+++.+-++++++...---++-+|..++ |. .--.|+|+|+++|+.+-+-....+.. ..+.=.|+.++
T Consensus 93 ~~l~M~~iA~~l~~~lgv~V~igGvEAemAi~GALTTPGt~~PlaIlDmG~GSTDAsii~~~g~v~~--iHlAGAG~mVT 170 (332)
T PF08841_consen 93 DKLQMQMIADELEEELGVPVEIGGVEAEMAILGALTTPGTDKPLAILDMGGGSTDASIINRDGEVTA--IHLAGAGNMVT 170 (332)
T ss_dssp SS-TCHHHHHHHHHHHTSEEEEECEHHHHHHHHHTTSTT--SSEEEEEE-SSEEEEEEE-TTS-EEE--EEEE-SHHHHH
T ss_pred ccccHHHHHHHHHHHHCCceEEccccHHHHHhcccCCCCCCCCeEEEecCCCcccHHHhCCCCcEEE--EEecCCchhhH
Confidence 3444567888888999999888888888888876 33 45668899999999877743333321 13345689999
Q ss_pred HHHHHHHHhcCCccccccHHHHHHHHHhh
Q 037845 189 DALMKILTERGYMFTTTAEREIVRDMKEK 217 (314)
Q Consensus 189 ~~l~~~l~~~~~~~~~~~~~~~~~~ik~~ 217 (314)
-.+..-|-. .+.+.+|+||..
T Consensus 171 mlI~sELGl--------~d~~lAE~IKky 191 (332)
T PF08841_consen 171 MLINSELGL--------EDRELAEDIKKY 191 (332)
T ss_dssp HHHHHHCT---------S-HHHHHHHHHS
T ss_pred HHHHHhhCC--------CCHHHHHHhhhc
Confidence 888776553 267899999965
No 80
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=82.01 E-value=10 Score=32.58 Aligned_cols=56 Identities=14% Similarity=0.162 Sum_probs=40.2
Q ss_pred HHHHHHHHHhhhCCCCeeeechhhhHhhhhc-------CCCeEEEEecCCCceEEEEeeCCeec
Q 037845 117 NREKMTQIMFETFNVPAMYVAIQAVLSLYAS-------GRTTGIVLDSGDGVSHTVPIYEGYAL 173 (314)
Q Consensus 117 ~~~~~~~~lfe~~~~~~v~~~~~~~~a~~~~-------g~~t~lVVDiG~~~t~i~pV~~g~~~ 173 (314)
.|-+.++-.....+... .+++...||.+++ .....+|||+|.+.|-.+.|.+|++.
T Consensus 128 TRm~av~~~~~~~~~~~-~vmDTg~AAvlGal~d~~v~~~~~~~~vniGN~HTlaa~v~~~rI~ 190 (254)
T PF08735_consen 128 TRMRAVRESLGGAGYDE-VVMDTGPAAVLGALCDPEVSSREGIIVVNIGNGHTLAALVKDGRIY 190 (254)
T ss_pred HHHHHHHHHhccCCCCc-eEecCHHHHHhhhhcChhhhccCCeEEEEeCCccEEEEEEeCCEEE
Confidence 34334433344444444 7888888887764 35799999999999999999888765
No 81
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=73.10 E-value=32 Score=30.48 Aligned_cols=52 Identities=17% Similarity=0.189 Sum_probs=40.0
Q ss_pred HHHHHhhhCCCCeeeechhhhHhhhh-------cCCCeEEEEecCCCceEEEEeeCCeecc
Q 037845 121 MTQIMFETFNVPAMYVAIQAVLSLYA-------SGRTTGIVLDSGDGVSHTVPIYEGYALP 174 (314)
Q Consensus 121 ~~~~lfe~~~~~~v~~~~~~~~a~~~-------~g~~t~lVVDiG~~~t~i~pV~~g~~~~ 174 (314)
+.+.+=+.+++| |++.+++-+++++ .+..+.++|.+|++. -...|.+|.++.
T Consensus 89 l~~~l~~~~~~p-v~v~NDa~~~alaE~~~g~~~~~~~~~~v~igtGi-G~giv~~G~~~~ 147 (318)
T TIGR00744 89 LKEKVEARVGLP-VVVENDANAAALGEYKKGAGKGARDVICITLGTGL-GGGIIINGEIRH 147 (318)
T ss_pred HHHHHHHHHCCC-EEEechHHHHHHHHHHhcccCCCCcEEEEEeCCcc-EEEEEECCEEee
Confidence 445555677887 8899999888774 245789999999875 577888998766
No 82
>PRK13320 pantothenate kinase; Reviewed
Probab=64.89 E-value=90 Score=26.76 Aligned_cols=18 Identities=28% Similarity=0.230 Sum_probs=16.0
Q ss_pred cEEEeCCCccEEEEEeCC
Q 037845 9 PLVCDNGTGMVKAGFAGD 26 (314)
Q Consensus 9 ~vViD~Gs~~~k~G~ag~ 26 (314)
.+.||+|-.++|+|+..+
T Consensus 4 ~L~iDiGNT~ik~~~~~~ 21 (244)
T PRK13320 4 NLVIDIGNTTTKLAVFEG 21 (244)
T ss_pred EEEEEeCCCcEEEEEEEC
Confidence 689999999999998764
No 83
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=63.66 E-value=7.6 Score=38.53 Aligned_cols=33 Identities=24% Similarity=0.315 Sum_probs=26.4
Q ss_pred HhhhhcCCCe--EEEEecCCCceEEEEeeCCeecc
Q 037845 142 LSLYASGRTT--GIVLDSGDGVSHTVPIYEGYALP 174 (314)
Q Consensus 142 ~a~~~~g~~t--~lVVDiG~~~t~i~pV~~g~~~~ 174 (314)
.|+|-+|..+ ++++|+|..+|.++-+.+|.+..
T Consensus 268 GAa~ltg~~~g~~i~~DmGGTStDva~i~~G~pe~ 302 (674)
T COG0145 268 GAAYLTGLKAGNAIVFDMGGTSTDVALIIDGEPEI 302 (674)
T ss_pred HHHHhcccccCCEEEEEcCCcceeeeeeecCcEEe
Confidence 3444457767 99999999999999999887654
No 84
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=62.02 E-value=17 Score=29.55 Aligned_cols=22 Identities=9% Similarity=0.250 Sum_probs=18.6
Q ss_pred cccCCccCCHHHHHHHHHHhcc
Q 037845 72 PIEHGIVSNWDDMEKIWHHTFY 93 (314)
Q Consensus 72 p~~~g~i~~~~~le~~l~~~~~ 93 (314)
-+++|.|.|.+.+.+.++.++.
T Consensus 36 gi~~G~I~d~~~~~~~I~~ai~ 57 (187)
T smart00842 36 GIRKGVIVDIEAAARAIREAVE 57 (187)
T ss_pred CccCcEEECHHHHHHHHHHHHH
Confidence 3789999999999888888874
No 85
>PRK00292 glk glucokinase; Provisional
Probab=60.34 E-value=73 Score=28.31 Aligned_cols=47 Identities=13% Similarity=0.154 Sum_probs=33.0
Q ss_pred HHHhhhCCCCeeeechhhhHhhhhc-----------C--C----CeEEEEecCCCceEEEEeeCC
Q 037845 123 QIMFETFNVPAMYVAIQAVLSLYAS-----------G--R----TTGIVLDSGDGVSHTVPIYEG 170 (314)
Q Consensus 123 ~~lfe~~~~~~v~~~~~~~~a~~~~-----------g--~----~t~lVVDiG~~~t~i~pV~~g 170 (314)
+.+=+.+++|.|.+.++.-+++++- | + .+.++|-+|.+- =...|++|
T Consensus 84 ~~l~~~~~~p~v~l~ND~~aaalgE~~~~~~~~~~~g~~~~~~~~~~~~v~~GTGi-G~giv~~g 147 (316)
T PRK00292 84 AAMKQELGLDHLLLINDFTAQALAIPRLGEEDLVQIGGGEPVPGAPIAVIGPGTGL-GVAGLVPV 147 (316)
T ss_pred HHHHHHhCCCeEEEEecHHHHHcccccCCHhheeEeCCCCCCCCCcEEEEEcCCcc-eEEEEEec
Confidence 4444567888899999999999873 2 2 567888888664 34455555
No 86
>KOG1386 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=58.96 E-value=1.5e+02 Score=28.22 Aligned_cols=88 Identities=14% Similarity=0.083 Sum_probs=54.3
Q ss_pred HHHHHHHHHhcccccccCCCCCceEEeeCCC---CChHHHHHHHHHHhhhCCCC--------eeeech-------hhhHh
Q 037845 82 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPL---NPKANREKMTQIMFETFNVP--------AMYVAI-------QAVLS 143 (314)
Q Consensus 82 ~~le~~l~~~~~~~l~~~~~~~~vll~~~~~---~~~~~~~~~~~~lfe~~~~~--------~v~~~~-------~~~~a 143 (314)
+.+..+++.+-...-+-...+.||.|-.-.- .+..+.+.+++.+-..+... .+.++. .-+++
T Consensus 65 ~~l~pLlefA~~~IPk~~h~~Tpl~l~ATAGMRLL~~~~qeaIl~~l~~~l~~~s~f~f~~~~a~IIsG~~EGvYgWi~~ 144 (501)
T KOG1386|consen 65 VYLTPLLEFAKEHIPKEKHKETPLFLGATAGMRLLPLAQQEAILEVLRRVLKSLSDFLFDDEWARIISGKEEGVYGWIAA 144 (501)
T ss_pred HHHHHHHHHHHhhCCHhhcCCCCeEEEecccceecCcccHHHHHHHHHHhcccccCCcccccccEEeecccceehhhHHH
Confidence 3556666666433223334678888775443 37788888888887766522 222222 33445
Q ss_pred hhhcC-----------CCeEEEEecCCCceEEEEeeC
Q 037845 144 LYASG-----------RTTGIVLDSGDGVSHTVPIYE 169 (314)
Q Consensus 144 ~~~~g-----------~~t~lVVDiG~~~t~i~pV~~ 169 (314)
.|..| +.|.=.+|+|..+|+|+-+..
T Consensus 145 NY~LG~f~~~~~~~~~~~T~G~lDlGGAS~QItFe~~ 181 (501)
T KOG1386|consen 145 NYLLGRFGKKNRWDSRKETFGALDLGGASTQITFEPP 181 (501)
T ss_pred HHHHHhccccCcccCCcceeeeEecCCceeEEEEecC
Confidence 55443 345667999999999997755
No 87
>PRK09557 fructokinase; Reviewed
Probab=57.99 E-value=1.1e+02 Score=26.92 Aligned_cols=52 Identities=15% Similarity=0.094 Sum_probs=36.3
Q ss_pred HHHHHhhhCCCCeeeechhhhHhhhhc-------CCCeEEEEecCCCceEEEEeeCCeecc
Q 037845 121 MTQIMFETFNVPAMYVAIQAVLSLYAS-------GRTTGIVLDSGDGVSHTVPIYEGYALP 174 (314)
Q Consensus 121 ~~~~lfe~~~~~~v~~~~~~~~a~~~~-------g~~t~lVVDiG~~~t~i~pV~~g~~~~ 174 (314)
+.+.+-+.+++| |.+.+++-+++++- +..+.+.+.+|.+ .-..-|.+|.++.
T Consensus 88 l~~~l~~~~~~p-v~~~NDa~aaA~aE~~~g~~~~~~~~~~l~igtG-iG~giv~~G~l~~ 146 (301)
T PRK09557 88 LDKDLSARLNRE-VRLANDANCLAVSEAVDGAAAGKQTVFAVIIGTG-CGAGVAINGRVHI 146 (301)
T ss_pred HHHHHHHHHCCC-EEEccchhHHHHHHHHhcccCCCCcEEEEEEccc-eEEEEEECCEEEe
Confidence 334444567887 88999988888653 2467778888855 5566777888765
No 88
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=56.81 E-value=1.3e+02 Score=26.21 Aligned_cols=47 Identities=13% Similarity=0.118 Sum_probs=34.7
Q ss_pred hhhCCCCeeeechhhhHhhhhc------CCCeEEEEecCCCceEEEEeeCCeecc
Q 037845 126 FETFNVPAMYVAIQAVLSLYAS------GRTTGIVLDSGDGVSHTVPIYEGYALP 174 (314)
Q Consensus 126 fe~~~~~~v~~~~~~~~a~~~~------g~~t~lVVDiG~~~t~i~pV~~g~~~~ 174 (314)
=+.+++| |++.++.-+++++- +..+.+.|.+|++ .-...|++|+++.
T Consensus 93 ~~~~~~p-v~v~NDa~a~a~aE~~~g~~~~~~~~~l~ig~G-iG~giv~~G~~~~ 145 (291)
T PRK05082 93 EQLTDLP-TIALNDAQAAAWAEYQALPDDIRNMVFITVSTG-VGGGIVLNGKLLT 145 (291)
T ss_pred HHHhCCC-EEEECcHHHHHHHHHHhcCCCCCCEEEEEECCC-cceEEEECCEEee
Confidence 3567887 88999888887642 3468899999966 4466777888765
No 89
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=55.34 E-value=62 Score=32.09 Aligned_cols=24 Identities=8% Similarity=0.007 Sum_probs=20.5
Q ss_pred HHHhhhCCCCeeeechhhhHhhhh
Q 037845 123 QIMFETFNVPAMYVAIQAVLSLYA 146 (314)
Q Consensus 123 ~~lfe~~~~~~v~~~~~~~~a~~~ 146 (314)
+.+-+.+++|.|.+.++.-|++++
T Consensus 99 ~~l~~~~g~~~v~l~ND~~aaA~g 122 (638)
T PRK14101 99 EATRRALGFDTLLVVNDFTALAMA 122 (638)
T ss_pred HHHHHHcCCCeEEEEchHHHHHcC
Confidence 445567899989999999999999
No 90
>PRK12408 glucokinase; Provisional
Probab=53.94 E-value=1.2e+02 Score=27.30 Aligned_cols=48 Identities=17% Similarity=0.212 Sum_probs=34.3
Q ss_pred HHHhhhCCCCeeeechhhhHhhhhc------------C----C-CeEEEEecCCCceEEEEeeCCe
Q 037845 123 QIMFETFNVPAMYVAIQAVLSLYAS------------G----R-TTGIVLDSGDGVSHTVPIYEGY 171 (314)
Q Consensus 123 ~~lfe~~~~~~v~~~~~~~~a~~~~------------g----~-~t~lVVDiG~~~t~i~pV~~g~ 171 (314)
+.+=+.+++|.|++.++.-|++|+- | . .+.++|-+|.+- =...|++|.
T Consensus 102 ~~l~~~~~~~~V~l~ND~naaa~gE~~~~~~~~~~~~g~~~~~~~~~~~i~~GTGi-Gggivi~g~ 166 (336)
T PRK12408 102 EQIRAQLGLQAVHLVNDFEAVAYAAPYMEGNQVLQLSGPAQAAAGPALVLGPGTGL-GAALWIPNG 166 (336)
T ss_pred HHHHHHcCCCeEEEeecHHHHHcccccCCHhHeeeecCCCCCCCCcEEEEECCCcc-eEEEEEcCC
Confidence 3444567898899999999999974 1 2 367888888664 355667774
No 91
>PRK13322 pantothenate kinase; Reviewed
Probab=51.83 E-value=1.5e+02 Score=25.35 Aligned_cols=18 Identities=22% Similarity=0.163 Sum_probs=15.7
Q ss_pred cEEEeCCCccEEEEEeCC
Q 037845 9 PLVCDNGTGMVKAGFAGD 26 (314)
Q Consensus 9 ~vViD~Gs~~~k~G~ag~ 26 (314)
.++||+|-.++|+|+..+
T Consensus 2 ~L~IDiGNT~iK~~l~~~ 19 (246)
T PRK13322 2 ILELDCGNSRLKWRVIDN 19 (246)
T ss_pred EEEEEeCCCcEEEEEEcC
Confidence 489999999999998764
No 92
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=50.24 E-value=2.1e+02 Score=26.36 Aligned_cols=118 Identities=17% Similarity=0.125 Sum_probs=0.0
Q ss_pred CCCcEEEeCCCccEEEEEeCCCCCCccCCceeeecCCCCccccCCCcccccccccccccCCceeeCcccCCccCCHHHHH
Q 037845 6 DIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDME 85 (314)
Q Consensus 6 ~~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~~~~~le 85 (314)
.+-++-||.||.++|+=.-.|+. .+.-+.+...+- ....+
T Consensus 134 ~~~~LGID~GSTtTK~VLm~d~~--~I~~~~~~~t~g--------------------------------------~p~~~ 173 (396)
T COG1924 134 GMYTLGIDSGSTTTKAVLMEDGK--EILYGFYVSTKG--------------------------------------RPIAE 173 (396)
T ss_pred CcEEEEEecCCcceeEEEEeCCC--eEEEEEEEcCCC--------------------------------------ChhHH
Q ss_pred HHHHHhcccccccCCCCCceEEeeCCCCChHHHHHHHHHHhhhCCCCeeeechhhhHhhhhcCCCeEEEEecCCCceEEE
Q 037845 86 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTV 165 (314)
Q Consensus 86 ~~l~~~~~~~l~~~~~~~~vll~~~~~~~~~~~~~~~~~lfe~~~~~~v~~~~~~~~a~~~~g~~t~lVVDiG~~~t~i~ 165 (314)
+.++.++ +.++.+..+..-+.+.-.- +.++...|. ....-.-+.-.+..|.|-.-..- .|+|||.+=+-++
T Consensus 174 ~~l~~~l-e~l~~~~~~I~~~~~TGYG------R~~v~~~~~-aD~~~~Ei~ah~kgA~~f~p~~d-tIiDIGGQD~K~i 244 (396)
T COG1924 174 KALKEAL-EELGEKLEEILGLGVTGYG------RNLVGAALG-ADKVVVEISAHAKGARYFAPDVD-TVIDIGGQDSKVI 244 (396)
T ss_pred HHHHHHH-HHcccChheeeeeeeeccc------HHHhhhhhc-CCcceeeeehhHHHHHHhCCCCc-EEEEecCcceeEE
Q ss_pred EeeCCee
Q 037845 166 PIYEGYA 172 (314)
Q Consensus 166 pV~~g~~ 172 (314)
-|.||.+
T Consensus 245 ~i~dG~v 251 (396)
T COG1924 245 KLEDGKV 251 (396)
T ss_pred EEeCCee
No 93
>TIGR03367 queuosine_QueD queuosine biosynthesis protein QueD. Members of this protein family, closely related to eukaryotic 6-pyruvoyl tetrahydrobiopterin synthase enzymes, are the QueD protein of queuosine biosynthesis. Queuosine is a hypermodified base in the wobble position of tRNAs for Tyr, His, Asp, and Asn in many species. This modification, although widespread, appears not to be important for viability. The queuosine precursor made by this enzyme may be converted instead to archeaosine as in some Archaea.
Probab=49.64 E-value=25 Score=25.01 Aligned_cols=50 Identities=20% Similarity=0.451 Sum_probs=33.1
Q ss_pred cCCccCCHHHHHHHHHHhcccccccCCCCCceEEeeCCCCChHHHHHHHHHHhhhCC
Q 037845 74 EHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN 130 (314)
Q Consensus 74 ~~g~i~~~~~le~~l~~~~~~~l~~~~~~~~vll~~~~~~~~~~~~~~~~~lfe~~~ 130 (314)
..|++.|+..+++.++.+.. .+ ++..+.-.+++. ...-|.+++++++.+.
T Consensus 42 ~~g~v~Df~~lk~~~~~i~~-~l-----Dh~~Lne~~~~~-~pT~E~ia~~i~~~l~ 91 (92)
T TIGR03367 42 EAGMVMDFSDLKAIVKEVVD-RL-----DHALLNDVPGLE-NPTAENLARWIYDRLK 91 (92)
T ss_pred CccEEEEHHHHHHHHHHHHH-hC-----CCcEeeCCCCCC-CCCHHHHHHHHHHHHh
Confidence 47899999999999887652 22 233333333443 3466789999998763
No 94
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=49.11 E-value=28 Score=31.42 Aligned_cols=34 Identities=12% Similarity=0.167 Sum_probs=28.3
Q ss_pred cCCCeEEEEecCCCceEEEEeeCCeeccccceEe
Q 037845 147 SGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180 (314)
Q Consensus 147 ~g~~t~lVVDiG~~~t~i~pV~~g~~~~~~~~~~ 180 (314)
+...+-++||+|++.|.++.|.+|+++..-..++
T Consensus 151 y~~~nfIlvEiG~~yta~iaV~~GkIVDGiggt~ 184 (343)
T PF07318_consen 151 YREVNFILVEIGSGYTAAIAVKNGKIVDGIGGTI 184 (343)
T ss_pred cccceEEEEEccCCceEEEEEECCeEEccccccc
Confidence 5667999999999999999999999997543333
No 95
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=48.96 E-value=27 Score=32.87 Aligned_cols=72 Identities=19% Similarity=0.224 Sum_probs=45.3
Q ss_pred CCceEEeeCCC------CChHHHHHHHHHHhhhC-CCC---------eeeechhhhHhhh-----hcC------CCeEEE
Q 037845 102 EHPVLLTEAPL------NPKANREKMTQIMFETF-NVP---------AMYVAIQAVLSLY-----ASG------RTTGIV 154 (314)
Q Consensus 102 ~~~vll~~~~~------~~~~~~~~~~~~lfe~~-~~~---------~v~~~~~~~~a~~-----~~g------~~t~lV 154 (314)
+.++.++++.+ +....|+.|.++..+.. +.| .--+++.|-+..- +-+ ...-++
T Consensus 174 ~~~~~i~eNV~P~i~~ln~epaR~~I~~vF~~~Iv~akGl~~i~~~~~~~i~PTP~AV~~a~~~la~~~~~~~g~g~ll~ 253 (463)
T TIGR01319 174 DIFYRITDNVLPDLDHLNPEAAREAICDIFLKKIVEAKGLDNAEDFIGEELMPTPAAVFEAAKAIAEGTDKDDGIGDFIL 253 (463)
T ss_pred CceEEecCCcCCCCCCcCchHHHHHHHHHHHHHHhcCCCHHHHHHHhCCcccCCHHHHHHHHHHHHhccccccCcCCEEE
Confidence 34555776543 56788888887766533 222 2234444433322 222 245799
Q ss_pred EecCCCceEEEEeeCCeec
Q 037845 155 LDSGDGVSHTVPIYEGYAL 173 (314)
Q Consensus 155 VDiG~~~t~i~pV~~g~~~ 173 (314)
||+|..+|+|-.+.+|.+.
T Consensus 254 VDIGGATTDvhSv~~g~~~ 272 (463)
T TIGR01319 254 IDIGGATTDVHSAAAGELS 272 (463)
T ss_pred EEcCccccchhhccCCCcc
Confidence 9999999999999999555
No 96
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=48.63 E-value=97 Score=26.97 Aligned_cols=45 Identities=20% Similarity=0.425 Sum_probs=29.4
Q ss_pred CCeEEEEecCCCceEEEEeeCCeec---cccceEecchHHHHHHHHHHHH
Q 037845 149 RTTGIVLDSGDGVSHTVPIYEGYAL---PHAILRLDLAGRDLTDALMKIL 195 (314)
Q Consensus 149 ~~t~lVVDiG~~~t~i~pV~~g~~~---~~~~~~~~~GG~~i~~~l~~~l 195 (314)
..-++|||+|.+.|..+-|-++++. .|+. .-+.-..+..++.++.
T Consensus 226 a~palvVd~GngHttaalvdedRI~gv~EHHT--~~Lspekled~I~rf~ 273 (342)
T COG4012 226 ADPALVVDYGNGHTTAALVDEDRIVGVYEHHT--IRLSPEKLEDQIIRFV 273 (342)
T ss_pred cCceEEEEccCCceEEEEecCCeEEEEeeccc--ccCCHHHHHHHHHHHH
Confidence 3589999999999999888887654 2222 2222355555555554
No 97
>cd08627 PI-PLCc_gamma1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=47.88 E-value=45 Score=28.26 Aligned_cols=43 Identities=21% Similarity=0.301 Sum_probs=33.7
Q ss_pred HHHHHHHHhcccccccCCCCCceEEeeCCCCChHHHHHHHHHHhhhCCC
Q 037845 83 DMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNV 131 (314)
Q Consensus 83 ~le~~l~~~~~~~l~~~~~~~~vll~~~~~~~~~~~~~~~~~lfe~~~~ 131 (314)
.++.+=+++|. .+++||||+.....+.++.+++++++-|.||=
T Consensus 75 v~~~I~~~AF~------~S~yPvIlslE~Hcs~~qQ~~ma~~l~~~lGd 117 (229)
T cd08627 75 VLHTIKEHAFV------TSEYPIILSIEDHCSIVQQRNMAQHFKKVFGD 117 (229)
T ss_pred HHHHHHHhhcc------CCCCCEEEEEcccCCHHHHHHHHHHHHHHHhh
Confidence 44555555553 37899999988888889999999999998876
No 98
>cd08626 PI-PLCc_beta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 4. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=46.07 E-value=47 Score=28.73 Aligned_cols=45 Identities=22% Similarity=0.265 Sum_probs=34.7
Q ss_pred HHHHHHHHHhcccccccCCCCCceEEeeCCCCChHHHHHHHHHHhhhCCCC
Q 037845 82 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVP 132 (314)
Q Consensus 82 ~~le~~l~~~~~~~l~~~~~~~~vll~~~~~~~~~~~~~~~~~lfe~~~~~ 132 (314)
|.++.|-+++|. .+++||||+.....+.++.+++++++-+.||=.
T Consensus 76 dv~~aI~~~AF~------~s~yPvIlslE~Hcs~~qQ~~ma~~l~~~lGd~ 120 (257)
T cd08626 76 DVIQAIKDTAFV------TSDYPVILSFENHCSKPQQYKLAKYCEEIFGDL 120 (257)
T ss_pred HHHHHHHHHhcc------cCCCCEEEEEeccCCHHHHHHHHHHHHHHHhHh
Confidence 345666666663 378999999878778889999999999888753
No 99
>PRK13331 pantothenate kinase; Reviewed
Probab=45.45 E-value=24 Score=30.48 Aligned_cols=27 Identities=15% Similarity=0.084 Sum_probs=23.8
Q ss_pred CCCCCCCCcEEEeCCCccEEEEEeCCC
Q 037845 1 MADAEDIQPLVCDNGTGMVKAGFAGDD 27 (314)
Q Consensus 1 ~~~~~~~~~vViD~Gs~~~k~G~ag~~ 27 (314)
||-...+..++||+|-.++++|+..++
T Consensus 1 ~~~~~~~~~L~iDiGNT~~~~g~f~~~ 27 (251)
T PRK13331 1 MMFHTSNEWLALMIGNSRLHWGYFSGE 27 (251)
T ss_pred CCCCCCCcEEEEEeCCCcEEEEEEECC
Confidence 788888999999999999999987654
No 100
>cd08630 PI-PLCc_delta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta3 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This family corresponds to the catalytic domain wh
Probab=45.11 E-value=50 Score=28.60 Aligned_cols=44 Identities=16% Similarity=0.237 Sum_probs=34.3
Q ss_pred HHHHHHHHHhcccccccCCCCCceEEeeCCCCChHHHHHHHHHHhhhCCC
Q 037845 82 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNV 131 (314)
Q Consensus 82 ~~le~~l~~~~~~~l~~~~~~~~vll~~~~~~~~~~~~~~~~~lfe~~~~ 131 (314)
|.++.+-+++|. .+++||||+.....+.++.+++++++-+.||=
T Consensus 74 ~v~~~I~~~AF~------~s~yPvIlslE~Hcs~~qQ~~~a~~l~~~~Gd 117 (258)
T cd08630 74 DVIQAVRQHAFT------ASPYPVILSLENHCGLEQQAAMARHLQTILGD 117 (258)
T ss_pred HHHHHHHHHhcc------CCCCCEEEEeeccCCHHHHHHHHHHHHHHHhh
Confidence 345555556663 47899999988888889999999999988875
No 101
>cd08596 PI-PLCc_epsilon Catalytic domain of metazoan phosphoinositide-specific phospholipase C-epsilon. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-epsilon isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-epsilon represents a class of mammalian PI-PLC that has an N-terminal CDC25 homology domain with a guanyl-nucleotide exchange factor (GFF) activity, a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core
Probab=44.76 E-value=50 Score=28.52 Aligned_cols=43 Identities=23% Similarity=0.316 Sum_probs=33.5
Q ss_pred HHHHHHHHhcccccccCCCCCceEEeeCCCCChHHHHHHHHHHhhhCCC
Q 037845 83 DMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNV 131 (314)
Q Consensus 83 ~le~~l~~~~~~~l~~~~~~~~vll~~~~~~~~~~~~~~~~~lfe~~~~ 131 (314)
.++.|=+++|. .+++||||+.....+.++.+++++++-+.||=
T Consensus 75 v~~~I~~~AF~------~S~yPvIlslE~Hcs~~qQ~~ma~~l~~~~Gd 117 (254)
T cd08596 75 VVEAINRSAFI------TSDYPVILSIENHCSLQQQRKMAEIFKTVFGE 117 (254)
T ss_pred HHHHHHHHhcc------CCCCCEEEEecccCCHHHHHHHHHHHHHHHhH
Confidence 44555556663 37899999988888889999999999988875
No 102
>cd08594 PI-PLCc_eta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding motif,
Probab=43.24 E-value=56 Score=27.66 Aligned_cols=44 Identities=27% Similarity=0.315 Sum_probs=33.8
Q ss_pred HHHHHHHHHhcccccccCCCCCceEEeeCCCCChHHHHHHHHHHhhhCCC
Q 037845 82 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNV 131 (314)
Q Consensus 82 ~~le~~l~~~~~~~l~~~~~~~~vll~~~~~~~~~~~~~~~~~lfe~~~~ 131 (314)
|.++.+=+++|. .+++||||+.....+.++.+++++++-|.||=
T Consensus 74 dv~~aI~~~AF~------~s~yPvIlSlE~Hcs~~qQ~~ma~~l~~~lGd 117 (227)
T cd08594 74 DVIETINKYAFI------KNEYPVILSIENHCSVQQQKKMAQYLKEILGD 117 (227)
T ss_pred HHHHHHHHhhcc------CCCCCEEEEecccCCHHHHHHHHHHHHHHHhH
Confidence 344555556663 37899999988888889999999999988875
No 103
>cd08598 PI-PLC1c_yeast Catalytic domain of putative yeast phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of putative phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) encoded by PLC1 genes from yeasts, which are homologs of the delta isoforms of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The prototype of this CD is protein Plc1p encoded by PLC1 genes fro
Probab=43.19 E-value=54 Score=27.89 Aligned_cols=44 Identities=27% Similarity=0.322 Sum_probs=33.8
Q ss_pred HHHHHHHHHhcccccccCCCCCceEEeeCCCCChHHHHHHHHHHhhhCCC
Q 037845 82 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNV 131 (314)
Q Consensus 82 ~~le~~l~~~~~~~l~~~~~~~~vll~~~~~~~~~~~~~~~~~lfe~~~~ 131 (314)
|.++.+=+++|. .+++||||+.....+.++.+++++++-+.||-
T Consensus 74 dv~~~Ik~~aF~------~s~yPvILslE~Hcs~~qQ~~ma~~l~~~lG~ 117 (231)
T cd08598 74 DVCRAIKKYAFV------TSPYPLILSLEVHCDAEQQERMVEIMKETFGD 117 (231)
T ss_pred HHHHHHHHHhcc------CCCCCEEEEEecCCCHHHHHHHHHHHHHHHHH
Confidence 344555556653 37899999987778889999999999988875
No 104
>cd08631 PI-PLCc_delta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta4 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which
Probab=43.15 E-value=53 Score=28.43 Aligned_cols=43 Identities=16% Similarity=0.186 Sum_probs=33.2
Q ss_pred HHHHHHHHhcccccccCCCCCceEEeeCCCCChHHHHHHHHHHhhhCCC
Q 037845 83 DMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNV 131 (314)
Q Consensus 83 ~le~~l~~~~~~~l~~~~~~~~vll~~~~~~~~~~~~~~~~~lfe~~~~ 131 (314)
.++.+=+++|. .+++||||+.....+.++.+++++++-|.||=
T Consensus 75 v~~~Ik~~AF~------~s~yPvIlslE~Hc~~~qQ~~ma~~l~~~lGd 117 (258)
T cd08631 75 VVAAVAQYAFQ------VSDYPVILSLENHCGVEQQQTMAQHLTEILGE 117 (258)
T ss_pred HHHHHHHHhcc------CCCCCEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 44555556653 37899999988888888888999999888874
No 105
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=43.15 E-value=28 Score=24.65 Aligned_cols=19 Identities=16% Similarity=0.179 Sum_probs=16.0
Q ss_pred CcEEEeCCCccEEEEEeCC
Q 037845 8 QPLVCDNGTGMVKAGFAGD 26 (314)
Q Consensus 8 ~~vViD~Gs~~~k~G~ag~ 26 (314)
..+.||+|...+++|+..+
T Consensus 2 ~ilgiD~Ggt~i~~a~~d~ 20 (99)
T smart00732 2 RVLGLDPGRKGIGVAVVDE 20 (99)
T ss_pred cEEEEccCCCeEEEEEECC
Confidence 3689999999999998743
No 106
>cd08629 PI-PLCc_delta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta1 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This subfamily corresponds to the catalytic domain
Probab=43.00 E-value=54 Score=28.36 Aligned_cols=44 Identities=16% Similarity=0.179 Sum_probs=34.1
Q ss_pred HHHHHHHHHhcccccccCCCCCceEEeeCCCCChHHHHHHHHHHhhhCCC
Q 037845 82 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNV 131 (314)
Q Consensus 82 ~~le~~l~~~~~~~l~~~~~~~~vll~~~~~~~~~~~~~~~~~lfe~~~~ 131 (314)
|.++.+-+++|. .+++||||+.....+.++.+++++++-|.||=
T Consensus 74 ~v~~~I~~~AF~------~S~yPvIlsLE~Hcs~~qQ~~ma~~l~~~lGd 117 (258)
T cd08629 74 DVLRAIRDYAFK------ASPYPVILSLENHCSLEQQRVMARHLRAILGP 117 (258)
T ss_pred HHHHHHHHHhcc------CCCCCEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 344555556663 37899999988888889999999999988875
No 107
>cd08558 PI-PLCc_eukaryota Catalytic domain of eukaryotic phosphoinositide-specific phospholipase C and similar proteins. This family corresponds to the catalytic domain present in eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) and similar proteins. The higher eukaryotic PI-PLCs play a critical role in most signal transduction pathways, controlling numerous cellular events such as cell growth, proliferation, excitation and secretion. They strictly require Ca2+ for the catalytic activity. They display a clear preference towards the hydrolysis of the more highly phosphorylated membrane phospholipids PI-analogues, phosphatidylinositol 4,5-bisphosphate (PIP2) and phosphatidylinositol-4-phosphate (PIP), to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein ki
Probab=42.25 E-value=58 Score=27.58 Aligned_cols=45 Identities=29% Similarity=0.338 Sum_probs=34.9
Q ss_pred HHHHHHHHHhcccccccCCCCCceEEeeCCCCChHHHHHHHHHHhhhCCCC
Q 037845 82 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVP 132 (314)
Q Consensus 82 ~~le~~l~~~~~~~l~~~~~~~~vll~~~~~~~~~~~~~~~~~lfe~~~~~ 132 (314)
|.++.+=+++|.. +++||||+.....+.++.+++++++-+.||-.
T Consensus 74 dv~~~Ik~~aF~~------s~yPvILslE~Hcs~~qQ~~ma~~l~~~lGd~ 118 (226)
T cd08558 74 DVIEAIKEYAFVT------SPYPVILSLENHCSLEQQKKMAQILKEIFGDK 118 (226)
T ss_pred HHHHHHHHHhccc------CCCCeEEEEecCCCHHHHHHHHHHHHHHHhhh
Confidence 3455666666633 78999999888888899999999999888753
No 108
>cd08593 PI-PLCc_delta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which is
Probab=42.22 E-value=55 Score=28.32 Aligned_cols=44 Identities=18% Similarity=0.181 Sum_probs=34.1
Q ss_pred HHHHHHHHHhcccccccCCCCCceEEeeCCCCChHHHHHHHHHHhhhCCC
Q 037845 82 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNV 131 (314)
Q Consensus 82 ~~le~~l~~~~~~~l~~~~~~~~vll~~~~~~~~~~~~~~~~~lfe~~~~ 131 (314)
|.++.|-+++|. .+++||||+.....+.++.+++++++-|.||=
T Consensus 74 ~v~~~I~~~aF~------~s~yPvIlslE~Hcs~~qQ~~~a~~~~~~~g~ 117 (257)
T cd08593 74 DVIQAIREYAFK------VSPYPVILSLENHCSVEQQKVMAQHLKSILGD 117 (257)
T ss_pred HHHHHHHHHhcc------CCCCCEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 345555556663 37899999988888889999999999988875
No 109
>cd08592 PI-PLCc_gamma Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain.The PLC catalytic core domain is a TIM barrel with two highl
Probab=41.68 E-value=60 Score=27.57 Aligned_cols=43 Identities=26% Similarity=0.339 Sum_probs=33.3
Q ss_pred HHHHHHHHhcccccccCCCCCceEEeeCCCCChHHHHHHHHHHhhhCCC
Q 037845 83 DMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNV 131 (314)
Q Consensus 83 ~le~~l~~~~~~~l~~~~~~~~vll~~~~~~~~~~~~~~~~~lfe~~~~ 131 (314)
.++.+=+++|. .+++||||+.....+.++.+++++++-|.||=
T Consensus 75 v~~~I~~~aF~------~s~yPvIlslE~Hcs~~qQ~~ma~il~~~lGd 117 (229)
T cd08592 75 VLKTIKEHAFV------TSEYPVILSIENHCSLPQQRNMAQAFKEVFGD 117 (229)
T ss_pred HHHHHHHHhcc------CCCCCEEEEEecCCCHHHHHHHHHHHHHHHhH
Confidence 44555555552 47899999987777889999999999988875
No 110
>cd08591 PI-PLCc_beta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for homod
Probab=41.47 E-value=59 Score=28.11 Aligned_cols=44 Identities=25% Similarity=0.258 Sum_probs=33.9
Q ss_pred HHHHHHHHhcccccccCCCCCceEEeeCCCCChHHHHHHHHHHhhhCCCC
Q 037845 83 DMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVP 132 (314)
Q Consensus 83 ~le~~l~~~~~~~l~~~~~~~~vll~~~~~~~~~~~~~~~~~lfe~~~~~ 132 (314)
.++.+=+++|. .+++||||+.....+.++.+++++++-|.||=.
T Consensus 77 v~~aIk~~AF~------~s~yPvIlslE~Hcs~~qQ~~ma~il~~~lGd~ 120 (257)
T cd08591 77 VIEAIAETAFK------TSEYPVILSFENHCSSKQQAKMAEYCREIFGDL 120 (257)
T ss_pred HHHHHHHHhcc------CCCCCEEEEEecCCCHHHHHHHHHHHHHHHHHH
Confidence 44555556663 478999999888888899999999999888743
No 111
>cd08595 PI-PLCc_zeta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-zeta. This family corresponds to the catalytic domain presenting in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-zeta isozyme. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-zeta represents a class of sperm-specific PI-PLC that has an N-terminal EF-hand domain, a PLC catalytic core domain, and a C-terminal C2 domain. The PLC catalytic core domain is a TIM barrel with two highly conserved regions (X and Y)
Probab=41.44 E-value=59 Score=28.13 Aligned_cols=44 Identities=14% Similarity=0.214 Sum_probs=34.1
Q ss_pred HHHHHHHHHhcccccccCCCCCceEEeeCCCCChHHHHHHHHHHhhhCCC
Q 037845 82 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNV 131 (314)
Q Consensus 82 ~~le~~l~~~~~~~l~~~~~~~~vll~~~~~~~~~~~~~~~~~lfe~~~~ 131 (314)
|.++.+-+++|. .+++||||+.....+.++.+++++++-|.||=
T Consensus 74 ~v~~~I~~~AF~------~s~yPvIlslE~Hcs~~qQ~~~a~~l~~~lgd 117 (257)
T cd08595 74 EVITTVEKYAFE------KSDYPVVLSLENHCSTEQQEIMAHYLVSILGE 117 (257)
T ss_pred HHHHHHHHHhcc------CCCCCEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 345555556663 47899999988888888888899999888874
No 112
>PRK13333 pantothenate kinase; Reviewed
Probab=41.19 E-value=33 Score=28.59 Aligned_cols=27 Identities=26% Similarity=0.560 Sum_probs=18.7
Q ss_pred hHhhhhcCCCeEEEEecCCCceEEEEeeCC
Q 037845 141 VLSLYASGRTTGIVLDSGDGVSHTVPIYEG 170 (314)
Q Consensus 141 ~~a~~~~g~~t~lVVDiG~~~t~i~pV~~g 170 (314)
++++++. ..++|||.|...| +-.+.+|
T Consensus 77 ~~a~~aa--~~~lVIDaGTAiT-iDvv~~g 103 (206)
T PRK13333 77 IAACYAI--EDGVVVDAGSAIT-VDIMSNG 103 (206)
T ss_pred HHHhccC--CCeEEEEcCCceE-EEEEcCC
Confidence 4455544 5799999999976 5555555
No 113
>cd08632 PI-PLCc_eta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m
Probab=41.16 E-value=63 Score=27.83 Aligned_cols=43 Identities=26% Similarity=0.321 Sum_probs=33.4
Q ss_pred HHHHHHHHhcccccccCCCCCceEEeeCCCCChHHHHHHHHHHhhhCCC
Q 037845 83 DMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNV 131 (314)
Q Consensus 83 ~le~~l~~~~~~~l~~~~~~~~vll~~~~~~~~~~~~~~~~~lfe~~~~ 131 (314)
.++.+-+++|. .+++||||+.....+.++.+++++++-|.||=
T Consensus 75 v~~aI~~~AF~------~S~yPvIlSlE~Hcs~~qQ~~ma~~l~~~lGd 117 (253)
T cd08632 75 VIETINKYAFV------KNEFPVILSIENHCSIQQQKKIAQYLKEIFGD 117 (253)
T ss_pred HHHHHHHHhcc------CCCCCEEEEecccCCHHHHHHHHHHHHHHHhh
Confidence 44555555553 47899999988888889999999999888874
No 114
>cd08633 PI-PLCc_eta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m
Probab=40.44 E-value=65 Score=27.80 Aligned_cols=44 Identities=27% Similarity=0.327 Sum_probs=33.8
Q ss_pred HHHHHHHHHhcccccccCCCCCceEEeeCCCCChHHHHHHHHHHhhhCCC
Q 037845 82 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNV 131 (314)
Q Consensus 82 ~~le~~l~~~~~~~l~~~~~~~~vll~~~~~~~~~~~~~~~~~lfe~~~~ 131 (314)
|.++.+-+++|. .+++||||+.....+.++.+++++++-|.||=
T Consensus 74 ~v~~~I~~~AF~------~s~yPvIlslE~Hcs~~qQ~~ma~~l~~~lGd 117 (254)
T cd08633 74 DVIETINKYAFI------KNEYPVILSIENHCSVPQQKKMAQYLTEILGD 117 (254)
T ss_pred HHHHHHHHHhcc------CCCCCEEEEecccCCHHHHHHHHHHHHHHHhH
Confidence 344555556663 37899999988888888999999999888864
No 115
>KOG1385 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=40.42 E-value=2.1e+02 Score=26.69 Aligned_cols=83 Identities=20% Similarity=0.269 Sum_probs=43.6
Q ss_pred HHHHHHHHhcccccccCCCCCceEEeeCC---CCChHHHHHHHHHHhhhCC----CC----eeeechhh---hHh----h
Q 037845 83 DMEKIWHHTFYNELRVAPEEHPVLLTEAP---LNPKANREKMTQIMFETFN----VP----AMYVAIQA---VLS----L 144 (314)
Q Consensus 83 ~le~~l~~~~~~~l~~~~~~~~vll~~~~---~~~~~~~~~~~~~lfe~~~----~~----~v~~~~~~---~~a----~ 144 (314)
.++.+|+++-...-....+..||.+-.-. +.+...-+++++.+=|.|. ++ +|.+++.. +.| .
T Consensus 122 Sl~~LLd~A~~~vP~~~~~kTPi~lkATAGLRlL~~~ka~~IL~aVre~l~~~s~f~v~~d~VsIm~GtdEGv~aWiTiN 201 (453)
T KOG1385|consen 122 SLRPLLDVAEAFVPREHWKKTPIVLKATAGLRLLPGSKADNILQAVRELLKNDSPFPVVEDAVSIMDGTDEGVYAWITIN 201 (453)
T ss_pred hHHHHHHHHHhhCCHhHhccCceEEEeecccccCChhHHHHHHHHHHHHHhccCCccccCCceeeccCcccceeeeeehh
Confidence 45566666643222222345677765422 1244444555555444333 22 45555422 111 1
Q ss_pred hh------cCCCeEEEEecCCCceEEE
Q 037845 145 YA------SGRTTGIVLDSGDGVSHTV 165 (314)
Q Consensus 145 ~~------~g~~t~lVVDiG~~~t~i~ 165 (314)
|. -+..|.=|||+|.++|+|+
T Consensus 202 ~Llg~L~~~~~~tvgv~DLGGGSTQi~ 228 (453)
T KOG1385|consen 202 YLLGTLGAPGHRTVGVVDLGGGSTQIT 228 (453)
T ss_pred hhhcccCCCCCCceEEEEcCCceEEEE
Confidence 11 1257888999999999998
No 116
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=40.41 E-value=1.6e+02 Score=25.45 Aligned_cols=41 Identities=15% Similarity=0.122 Sum_probs=28.9
Q ss_pred eeeechhhhHhhhhcCCCeEEEEecCCCceEEEEee-CCeecc
Q 037845 133 AMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIY-EGYALP 174 (314)
Q Consensus 133 ~v~~~~~~~~a~~~~g~~t~lVVDiG~~~t~i~pV~-~g~~~~ 174 (314)
.+.+..+...++++.... .-||+++...+.+..+- +|....
T Consensus 89 ~v~~~~Da~~al~~~~~~-~giv~I~GTGS~~~~~~~~g~~~r 130 (271)
T PF01869_consen 89 EVIVVNDAAIALYGATAE-DGIVVIAGTGSIAYGRDRDGRVIR 130 (271)
T ss_dssp EEEEEEHHHHHHHHHSTS-SEEEEEESSSEEEEEEETTSEEEE
T ss_pred EEEEEHHHHHHhCCCCCC-cEEEEEcCCCceEEEEEcCCcEEE
Confidence 889999999988876664 44555555556666676 776654
No 117
>PRK13317 pantothenate kinase; Provisional
Probab=38.93 E-value=1.7e+02 Score=25.66 Aligned_cols=38 Identities=13% Similarity=0.119 Sum_probs=23.9
Q ss_pred CCCeEEEEecCCCceEEEEeeCCeeccccceEecchHHHHH
Q 037845 148 GRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLT 188 (314)
Q Consensus 148 g~~t~lVVDiG~~~t~i~pV~~g~~~~~~~~~~~~GG~~i~ 188 (314)
.....+++++|.+.+ +.-|.++. .....-..+||-.+.
T Consensus 94 ~~~~~~i~~iG~g~s-i~~~~g~~--~~r~~Gt~iGGgt~~ 131 (277)
T PRK13317 94 DLNDYIFTNIGTGTS-IHYVDGNS--QRRVGGTGIGGGTIQ 131 (277)
T ss_pred CCCcEEEEEecCceE-EEEEeCCc--eEEEccccccHHHHH
Confidence 556789999999965 76665552 222223567885443
No 118
>cd08597 PI-PLCc_PRIP_metazoa Catalytic domain of metazoan phospholipase C related, but catalytically inactive protein. This family corresponds to the catalytic domain present in metazoan phospholipase C related, but catalytically inactive proteins (PRIP), which belong to a group of novel Inositol 1,4,5-trisphosphate (InsP3) binding protein. PRIP has a primary structure and domain architecture, incorporating a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain with highly conserved X- and Y-regions split by a linker sequence, and a C-terminal C2 domain, similar to phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11)-delta isoforms. Due to replacement of critical catalytic residues, PRIP do not have PLC enzymatic activity. PRIP consists of two subfamilies, PRIP-1(previously known as p130 or PLC-1), which is predominantly expressed in the brain, and PRIP-2 (previously known as PLC-2), which exhibits a relatively ubiquitous expression. Experiment
Probab=38.42 E-value=68 Score=27.84 Aligned_cols=44 Identities=23% Similarity=0.240 Sum_probs=33.6
Q ss_pred HHHHHHHHHhcccccccCCCCCceEEeeCCCCChHHHHHHHHHHhhhCCC
Q 037845 82 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNV 131 (314)
Q Consensus 82 ~~le~~l~~~~~~~l~~~~~~~~vll~~~~~~~~~~~~~~~~~lfe~~~~ 131 (314)
|.++.+=+++|. .+++||||+.....+.++.+++++++-+.||-
T Consensus 74 dv~~~I~~~aF~------~s~yPvIlslE~Hc~~~qQ~~~a~~l~~~lG~ 117 (260)
T cd08597 74 SVIEAINEYAFV------ASEYPLILCIENHCSEKQQLVMAQYLKEIFGD 117 (260)
T ss_pred HHHHHHHHHhcc------CCCCCEEEEEecCCCHHHHHHHHHHHHHHHHH
Confidence 344555556653 37899999987888889999999999888875
No 119
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=37.74 E-value=2.9e+02 Score=24.52 Aligned_cols=90 Identities=20% Similarity=0.220 Sum_probs=67.3
Q ss_pred HHHHHHHHhcccccccCCCC--CceEEeeCCCCChHHHHHHHHHHhhhCC--CCeeeechhhhHhhhhc--CCCeEEEEe
Q 037845 83 DMEKIWHHTFYNELRVAPEE--HPVLLTEAPLNPKANREKMTQIMFETFN--VPAMYVAIQAVLSLYAS--GRTTGIVLD 156 (314)
Q Consensus 83 ~le~~l~~~~~~~l~~~~~~--~~vll~~~~~~~~~~~~~~~~~lfe~~~--~~~v~~~~~~~~a~~~~--g~~t~lVVD 156 (314)
-++++++.++ ++-+.+.+. +.|.|..+-......-+++.+.+-.+|. ...+++..++..++++. |...|+|+=
T Consensus 48 rie~~i~~A~-~k~g~d~~~~lr~lgL~lSg~d~e~~~~~lv~~~R~~fps~ae~~~v~sDa~~sl~a~t~g~~~GiVLi 126 (336)
T KOG1794|consen 48 RIEDMIREAK-EKAGWDKKGPLRSLGLGLSGTDQEDKNRKLVTEFRDKFPSVAENFYVTSDADGSLAAATPGGEGGIVLI 126 (336)
T ss_pred HHHHHHHHHH-hhcCCCccCccceeeeecccCCchhHHHHHHHHHHHhccchhheeeeehhHHHHHhhcCCCCCCcEEEE
Confidence 4677788887 456666554 5677777777777777778888777663 24588999999988876 559999999
Q ss_pred cCCCceEEEEeeCCeec
Q 037845 157 SGDGVSHTVPIYEGYAL 173 (314)
Q Consensus 157 iG~~~t~i~pV~~g~~~ 173 (314)
-|.++..-.-.-||..-
T Consensus 127 aGTgs~crl~~~DGs~~ 143 (336)
T KOG1794|consen 127 AGTGSNCRLVNPDGSEK 143 (336)
T ss_pred ecCCceeEEECCCCCcc
Confidence 99998777677777544
No 120
>COG2441 Predicted butyrate kinase [Energy production and conversion]
Probab=37.39 E-value=51 Score=28.87 Aligned_cols=48 Identities=17% Similarity=0.144 Sum_probs=34.6
Q ss_pred CCeEEEEecCCCceEEEEeeCCeeccccceEe----cchHHHHHHHHHHHHH
Q 037845 149 RTTGIVLDSGDGVSHTVPIYEGYALPHAILRL----DLAGRDLTDALMKILT 196 (314)
Q Consensus 149 ~~t~lVVDiG~~~t~i~pV~~g~~~~~~~~~~----~~GG~~i~~~l~~~l~ 196 (314)
+.+-+.|.+|...|.+++|.+|+++.....+. ..||-.++..+...|.
T Consensus 162 k~nfIavE~G~aytaavaV~nGkIVDGmgGttgf~gylg~g~MD~ElAYaLa 213 (374)
T COG2441 162 KVNFIAVEIGFAYTAAVAVKNGKIVDGMGGTTGFTGYLGGGAMDGELAYALA 213 (374)
T ss_pred hhhhHHHhhhccceeEEEEECCEEEeccCCccCcccccccccccHHHHHHHH
Confidence 45668899999999999999999998644444 4555455555555554
No 121
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=36.51 E-value=1e+02 Score=21.65 Aligned_cols=46 Identities=13% Similarity=0.014 Sum_probs=27.8
Q ss_pred EEEEecCCCceEEEEe-eCCeeccccceEecchHHHHHHHHHHHHHh
Q 037845 152 GIVLDSGDGVSHTVPI-YEGYALPHAILRLDLAGRDLTDALMKILTE 197 (314)
Q Consensus 152 ~lVVDiG~~~t~i~pV-~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~ 197 (314)
-+-+|+|...+.++.+ .+|..+........-+...+-+.+.+++.+
T Consensus 3 ilgiD~Ggt~i~~a~~d~~g~~~~~~~~~~~~~~~~~~~~l~~~i~~ 49 (99)
T smart00732 3 VLGLDPGRKGIGVAVVDETGKLADPLEVIPRTNKEADAARLKKLIKK 49 (99)
T ss_pred EEEEccCCCeEEEEEECCCCCEecCEEEEEecCcchHHHHHHHHHHH
Confidence 4789999888887777 466666432222222445555666666654
No 122
>PF02685 Glucokinase: Glucokinase; InterPro: IPR003836 Glucokinases 2.7.1.2 from EC are found in invertebrates and microorganisms and are highly specific for glucose. These enzymes phosphorylate glucose using ATP as a donor to give glucose-6-phosphate and ADP [].; GO: 0004340 glucokinase activity, 0005524 ATP binding, 0006096 glycolysis, 0051156 glucose 6-phosphate metabolic process; PDB: 1SZ2_B 1Q18_B 2Q2R_B.
Probab=36.14 E-value=37 Score=30.45 Aligned_cols=44 Identities=18% Similarity=0.300 Sum_probs=29.0
Q ss_pred hhCCCCeeeechhhhHhhhhc-----------------CCCeEEEEecCCCc--eEEEEeeCC
Q 037845 127 ETFNVPAMYVAIQAVLSLYAS-----------------GRTTGIVLDSGDGV--SHTVPIYEG 170 (314)
Q Consensus 127 e~~~~~~v~~~~~~~~a~~~~-----------------g~~t~lVVDiG~~~--t~i~pV~~g 170 (314)
..++++.+.++++-.+.+|+. .....+|+-.|.+- ..++|.-++
T Consensus 88 ~~lg~~~v~liNDfeA~a~gl~~L~~~~l~~l~~g~~~~~~~~~Vig~GTGLG~a~l~~~~~~ 150 (316)
T PF02685_consen 88 QRLGIPRVRLINDFEAQAYGLPALDPEDLVTLQPGEPDPGGPRAVIGPGTGLGVALLVPDGDG 150 (316)
T ss_dssp CCCT-TCEEEEEHHHHHHHHHHHHHHCCECCHCCEESSTTS-EEEEEESSSEEEEEEEEETTE
T ss_pred HHhCCceEEEEcccchheeccCCCCHHHeeeccCCCCCCCCcEEEEEcCCCcEEEEEEecCCc
Confidence 578999999999999999974 14566777776654 334444333
No 123
>cd08628 PI-PLCc_gamma2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 2. PI-PLC is a signaling enzyme that hydrolyze the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=35.92 E-value=83 Score=27.20 Aligned_cols=43 Identities=23% Similarity=0.353 Sum_probs=32.9
Q ss_pred HHHHHHHHhcccccccCCCCCceEEeeCCCCChHHHHHHHHHHhhhCCC
Q 037845 83 DMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNV 131 (314)
Q Consensus 83 ~le~~l~~~~~~~l~~~~~~~~vll~~~~~~~~~~~~~~~~~lfe~~~~ 131 (314)
.++.+-+++|. .++.||||+.....+.++.+++++++-+.||=
T Consensus 75 v~~~I~~~AF~------~s~yPvIlslE~Hcs~~qQ~~ma~~l~~~lGd 117 (254)
T cd08628 75 VVQAIKDHAFV------TSEYPVILSIEEHCSVEQQRHMAKVFKEVFGD 117 (254)
T ss_pred HHHHHHHHhcc------CCCCCEEEEEeccCCHHHHHHHHHHHHHHHhH
Confidence 44555556653 37899999987777888888899998888775
No 124
>PRK00976 hypothetical protein; Provisional
Probab=35.83 E-value=57 Score=29.29 Aligned_cols=32 Identities=19% Similarity=0.071 Sum_probs=26.5
Q ss_pred HhhhhcCCCeEEEEecCCCceEEEEeeCCeecc
Q 037845 142 LSLYASGRTTGIVLDSGDGVSHTVPIYEGYALP 174 (314)
Q Consensus 142 ~a~~~~g~~t~lVVDiG~~~t~i~pV~~g~~~~ 174 (314)
+|.+-++..+-+|+|+|+ .|....|-+|+++-
T Consensus 141 ~a~~~~~~~~fi~~diss-ntv~~~V~~gkIvg 172 (326)
T PRK00976 141 NAYKLFGFENFIVSDISS-NTVTLLVKDGKIVG 172 (326)
T ss_pred HHHhhcCCCcEEEEeccc-cEEEEEEECCEEEc
Confidence 333457889999999999 78888999998885
No 125
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=33.18 E-value=97 Score=28.93 Aligned_cols=22 Identities=14% Similarity=0.231 Sum_probs=18.0
Q ss_pred cccCCccCCHHHHHHHHHHhcc
Q 037845 72 PIEHGIVSNWDDMEKIWHHTFY 93 (314)
Q Consensus 72 p~~~g~i~~~~~le~~l~~~~~ 93 (314)
-+++|.|.|.+.+.+-++.++.
T Consensus 45 gi~~G~I~d~~~~~~aI~~av~ 66 (420)
T PRK09472 45 GMDKGGVNDLESVVKCVQRAID 66 (420)
T ss_pred CccCCEEEcHHHHHHHHHHHHH
Confidence 4678999999998888887774
No 126
>cd08624 PI-PLCc_beta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=33.14 E-value=93 Score=27.02 Aligned_cols=44 Identities=23% Similarity=0.264 Sum_probs=32.6
Q ss_pred HHHHHHHHHhcccccccCCCCCceEEeeCCCC-ChHHHHHHHHHHhhhCCC
Q 037845 82 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLN-PKANREKMTQIMFETFNV 131 (314)
Q Consensus 82 ~~le~~l~~~~~~~l~~~~~~~~vll~~~~~~-~~~~~~~~~~~lfe~~~~ 131 (314)
|.++.|=+++|. .+++||||+..... +.++.+++++++-|.||=
T Consensus 76 dv~~~I~~~AF~------~s~yPvIlslE~Hc~s~~qQ~~ma~~l~~~lGd 120 (261)
T cd08624 76 DAIEAIAESAFK------TSPYPVILSFENHVDSPKQQAKMAEYCRTIFGD 120 (261)
T ss_pred HHHHHHHHHhcc------CCCCCEEEEehhcCCCHHHHHHHHHHHHHHHhh
Confidence 344555556663 37899999966555 778888899999998876
No 127
>cd08599 PI-PLCc_plant Catalytic domain of plant phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11) encoded by PLC genes from higher plants, which are homologs of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The domain arrangement of plant PI-PLCs is structurally similar to the mammalian PLC-zeta isoform, whi
Probab=32.24 E-value=1.1e+02 Score=25.93 Aligned_cols=43 Identities=26% Similarity=0.281 Sum_probs=32.2
Q ss_pred HHHHHHHHhcccccccCCCCCceEEeeCCCCChHHHHHHHHHHhhhCCC
Q 037845 83 DMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNV 131 (314)
Q Consensus 83 ~le~~l~~~~~~~l~~~~~~~~vll~~~~~~~~~~~~~~~~~lfe~~~~ 131 (314)
.++.+=+++| ..+++||||......+.++.+++++++-+.||=
T Consensus 75 vl~~I~~~aF------~~s~yPvILslE~hcs~~qQ~~~a~~l~~~lGd 117 (228)
T cd08599 75 CIKAIKENAF------TASEYPVIITLENHLSPELQAKAAQILRETLGD 117 (228)
T ss_pred HHHHHHHHhc------cCCCCCEEEEEecCCCHHHHHHHHHHHHHHHhh
Confidence 3444444554 237899999987777888888899999999983
No 128
>cd08623 PI-PLCc_beta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=32.15 E-value=1e+02 Score=26.74 Aligned_cols=45 Identities=20% Similarity=0.220 Sum_probs=33.0
Q ss_pred HHHHHHHHHhcccccccCCCCCceEEeeCCCC-ChHHHHHHHHHHhhhCCCC
Q 037845 82 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLN-PKANREKMTQIMFETFNVP 132 (314)
Q Consensus 82 ~~le~~l~~~~~~~l~~~~~~~~vll~~~~~~-~~~~~~~~~~~lfe~~~~~ 132 (314)
|.++.|=+++|. .+++||||+..... +.++.+++++++-|.||=.
T Consensus 76 dv~~~I~~~AF~------~S~yPvIlSlE~Hc~s~~qQ~~ma~~l~~~lGd~ 121 (258)
T cd08623 76 EVIEAIAECAFK------TSPFPILLSFENHVDSPKQQAKMAEYCRLIFGDA 121 (258)
T ss_pred HHHHHHHHHhcc------CCCCCEEEEehhcCCCHHHHHHHHHHHHHHHhhh
Confidence 344555556663 47899999976665 6788888999999888753
No 129
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=31.28 E-value=90 Score=28.99 Aligned_cols=49 Identities=16% Similarity=0.206 Sum_probs=32.9
Q ss_pred eEEEEecCCCceEEEEeeCCeeccccceEecchHHHHHHHHHHHHHhcC
Q 037845 151 TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERG 199 (314)
Q Consensus 151 t~lVVDiG~~~t~i~pV~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~ 199 (314)
--+=||+|+.+|.++.+-++.++...+.....--....+.+.+++.+.+
T Consensus 145 ~~lGIDiGSTttK~Vl~dd~~Ii~~~~~~t~~~~~~a~~~l~~~l~~~G 193 (404)
T TIGR03286 145 LTLGIDSGSTTTKAVVMEDNEVIGTGWVPTTKVIESAEEAVERALEEAG 193 (404)
T ss_pred EEEEEEcChhheeeEEEcCCeEEEEEEeecccHHHHHHHHHHHHHHHcC
Confidence 3555799999999998887866655544332224566666777777654
No 130
>cd08625 PI-PLCc_beta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 3. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=30.33 E-value=1e+02 Score=26.80 Aligned_cols=43 Identities=21% Similarity=0.217 Sum_probs=31.5
Q ss_pred HHHHHHHHhcccccccCCCCCceEEeeCCCC-ChHHHHHHHHHHhhhCCC
Q 037845 83 DMEKIWHHTFYNELRVAPEEHPVLLTEAPLN-PKANREKMTQIMFETFNV 131 (314)
Q Consensus 83 ~le~~l~~~~~~~l~~~~~~~~vll~~~~~~-~~~~~~~~~~~lfe~~~~ 131 (314)
.++.+=+++|. .+++||||+..... +.++.+++++++-|.||-
T Consensus 77 v~~~I~~~aF~------~s~yPvIlslE~Hc~s~~qQ~~ma~~l~~ilGd 120 (258)
T cd08625 77 VIEAIAESAFK------TSPYPVILSFENHVDSAKQQAKMAEYCRSIFGD 120 (258)
T ss_pred HHHHHHHHhcc------CCCCCEEEEehhcCCCHHHHHHHHHHHHHHHHH
Confidence 44555556663 37899999976555 688888899999887765
No 131
>PF13941 MutL: MutL protein
Probab=28.80 E-value=59 Score=30.75 Aligned_cols=64 Identities=19% Similarity=0.236 Sum_probs=40.3
Q ss_pred CCCChHHHHHHHHHHhhhC-CCCe---------eeechhhhHhh-----hhc-CCCeEEEEecCCCceEEEEeeCCeecc
Q 037845 111 PLNPKANREKMTQIMFETF-NVPA---------MYVAIQAVLSL-----YAS-GRTTGIVLDSGDGVSHTVPIYEGYALP 174 (314)
Q Consensus 111 ~~~~~~~~~~~~~~lfe~~-~~~~---------v~~~~~~~~a~-----~~~-g~~t~lVVDiG~~~t~i~pV~~g~~~~ 174 (314)
..+....|+.|.++..+.. +.|+ --+++.|-+.. ++- +...-++||+|..+|+|-.|.+|.+..
T Consensus 193 ~ln~~paR~~I~~~F~~~Ii~akGl~~~~~~~~~~i~PTP~AVl~~~~lla~~~~g~llvVDIGGATTDVhSv~~~~~~~ 272 (457)
T PF13941_consen 193 VLNVEPAREAIREVFLRHIIQAKGLSKLREMVDGPIMPTPAAVLRAAELLAEGGIGDLLVVDIGGATTDVHSVAEGSPEI 272 (457)
T ss_pred CcChHHHHHHHHHHHHHHHhcCCCHHHHHHHhCCcccCCHHHHHHHHHHHHhcccCCEEEEEccCcccchhhhccCCccc
Confidence 4455666776666655422 2332 23444444432 234 668999999999999999999665544
No 132
>PRK03011 butyrate kinase; Provisional
Probab=26.02 E-value=47 Score=30.33 Aligned_cols=27 Identities=19% Similarity=0.185 Sum_probs=22.4
Q ss_pred CCeEEEEecCCCceEEEEeeCCeecccc
Q 037845 149 RTTGIVLDSGDGVSHTVPIYEGYALPHA 176 (314)
Q Consensus 149 ~~t~lVVDiG~~~t~i~pV~~g~~~~~~ 176 (314)
..+.+++.+|.+. .++.+.+|+++..+
T Consensus 175 ~~n~I~~hLGtGi-g~gai~~Gk~idgs 201 (358)
T PRK03011 175 ELNLIVAHLGGGI-SVGAHRKGRVIDVN 201 (358)
T ss_pred cCcEEEEEeCCCc-eeeEEECCEEEecC
Confidence 4599999999986 68899999998743
No 133
>PRK13329 pantothenate kinase; Reviewed
Probab=25.94 E-value=57 Score=28.11 Aligned_cols=17 Identities=29% Similarity=0.274 Sum_probs=15.3
Q ss_pred cEEEeCCCccEEEEEeC
Q 037845 9 PLVCDNGTGMVKAGFAG 25 (314)
Q Consensus 9 ~vViD~Gs~~~k~G~ag 25 (314)
.++||.|-..+|.++..
T Consensus 3 ~LliD~GNTriKw~~~~ 19 (249)
T PRK13329 3 FLAIDVGNTRLKWGLYD 19 (249)
T ss_pred EEEEEcCcchheeeEec
Confidence 68999999999998775
No 134
>PF13941 MutL: MutL protein
Probab=25.51 E-value=50 Score=31.23 Aligned_cols=23 Identities=35% Similarity=0.468 Sum_probs=18.5
Q ss_pred cEEEeCCCccEEEEEeC--CCCCCc
Q 037845 9 PLVCDNGTGMVKAGFAG--DDAPRA 31 (314)
Q Consensus 9 ~vViD~Gs~~~k~G~ag--~~~P~~ 31 (314)
.+++|+||.+||+-... ++.+++
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~~~~~ 26 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDGEPRL 26 (457)
T ss_pred EEEEEeCCcceEEeEEeccCCccEE
Confidence 58999999999998776 556654
No 135
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=25.10 E-value=57 Score=27.67 Aligned_cols=19 Identities=42% Similarity=0.316 Sum_probs=15.6
Q ss_pred cEEEeCCCccEEEEEeCCC
Q 037845 9 PLVCDNGTGMVKAGFAGDD 27 (314)
Q Consensus 9 ~vViD~Gs~~~k~G~ag~~ 27 (314)
.++||+||.++|+....++
T Consensus 2 ~lgiDiGTts~K~~l~d~~ 20 (245)
T PF00370_consen 2 YLGIDIGTTSVKAVLFDED 20 (245)
T ss_dssp EEEEEECSSEEEEEEEETT
T ss_pred EEEEEEcccceEEEEEeCC
Confidence 4799999999999866543
No 136
>KOG1138 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=24.26 E-value=2.4e+02 Score=27.10 Aligned_cols=88 Identities=10% Similarity=0.093 Sum_probs=51.9
Q ss_pred CcccCCccCCHHHHHHHHHHhcccccccCCCCCceEEeeCCCCChHHHH-HHHHHHhhhCCCCeeeech-----------
Q 037845 71 YPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE-KMTQIMFETFNVPAMYVAI----------- 138 (314)
Q Consensus 71 ~p~~~g~i~~~~~le~~l~~~~~~~l~~~~~~~~vll~~~~~~~~~~~~-~~~~~lfe~~~~~~v~~~~----------- 138 (314)
...-.|.|+ |.+|.+-+++-. ..-++.|+..+.|.-.+.-.-. .++|++-+ ....+||+-.
T Consensus 299 PcyPsGviy--dl~Ecls~~idn----a~ls~~P~yfISpvadSsla~s~ilaEwls~-akqnkvylpe~p~~hs~lI~~ 371 (653)
T KOG1138|consen 299 PCYPSGVIY--DLIECLSQDIDN----AGLSDTPIYFISPVADSSLATSDILAEWLSL-AKQNKVYLPEAPFPHSTLITI 371 (653)
T ss_pred eccCCchhh--HHHHHhhhcccc----cCCcCCcceEecccchhhhhHHHHHHHHHHh-hhccceeccCCCCCCceEEee
Confidence 335567773 455555444322 2234789988887776554444 44444433 3334454433
Q ss_pred ------hhhHhhhhcCCCeEEEEecCCCceEEE
Q 037845 139 ------QAVLSLYASGRTTGIVLDSGDGVSHTV 165 (314)
Q Consensus 139 ------~~~~a~~~~g~~t~lVVDiG~~~t~i~ 165 (314)
.++...||..-.+.|||++||-+-++.
T Consensus 372 ~rlkiy~sl~g~fSndfrqpcvvf~~H~SlRfg 404 (653)
T KOG1138|consen 372 NRLKIYLSLLGLFSNDFRQPCVVFMGHPSLRFG 404 (653)
T ss_pred cceeehHHHHHHHhhhcccceeEecCCcchhhh
Confidence 345566777788999999999855443
No 137
>PLN02952 phosphoinositide phospholipase C
Probab=23.50 E-value=1.6e+02 Score=29.08 Aligned_cols=44 Identities=16% Similarity=0.212 Sum_probs=33.5
Q ss_pred HHHHHHHHHhcccccccCCCCCceEEeeCCCCChHHHHHHHHHHhhhCCC
Q 037845 82 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNV 131 (314)
Q Consensus 82 ~~le~~l~~~~~~~l~~~~~~~~vll~~~~~~~~~~~~~~~~~lfe~~~~ 131 (314)
|.++.|=+++|. .+++||||+.....+.++.+++++++-+.||=
T Consensus 196 ~v~~~I~~~aF~------~s~yPvIlslE~Hcs~~qQ~~~a~~~~~~~g~ 239 (599)
T PLN02952 196 KCLKSIRDYAFS------SSPYPVIITLEDHLTPDLQAKVAEMATQIFGQ 239 (599)
T ss_pred HHHHHHHHHhcc------CCCCCEEEEeecCCCHHHHHHHHHHHHHHHhh
Confidence 344555556553 37899999987787888888899999888875
No 138
>PLN02230 phosphoinositide phospholipase C 4
Probab=23.07 E-value=1.6e+02 Score=29.04 Aligned_cols=44 Identities=18% Similarity=0.218 Sum_probs=33.8
Q ss_pred HHHHHHHHHhcccccccCCCCCceEEeeCCCCChHHHHHHHHHHhhhCCC
Q 037845 82 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNV 131 (314)
Q Consensus 82 ~~le~~l~~~~~~~l~~~~~~~~vll~~~~~~~~~~~~~~~~~lfe~~~~ 131 (314)
+.++.|-+++|. .+++||||+.....+..+..++++++-+.||=
T Consensus 187 ~v~~~I~~~aF~------~s~yPvIlslE~hcs~~~Q~~~a~~~~~~~Gd 230 (598)
T PLN02230 187 KCLDSIKANAFA------ISKYPVIITLEDHLTPKLQFKVAKMITQTFGD 230 (598)
T ss_pred HHHHHHHHhccC------CCCCCeEEEeccCCCHHHHHHHHHHHHHHHhh
Confidence 345555556653 37899999987888888888999999888875
No 139
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=22.46 E-value=1.2e+02 Score=24.69 Aligned_cols=60 Identities=15% Similarity=0.191 Sum_probs=35.3
Q ss_pred HHHHHHHHHhcccccccCCCCCceEEeeCCCCC-----------hHHHHHHHHHHhhhC---CCCeeeechhhhH
Q 037845 82 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNP-----------KANREKMTQIMFETF---NVPAMYVAIQAVL 142 (314)
Q Consensus 82 ~~le~~l~~~~~~~l~~~~~~~~vll~~~~~~~-----------~~~~~~~~~~lfe~~---~~~~v~~~~~~~~ 142 (314)
+.+..-+...+ +.+....-+.|++++++...+ ........+-+++++ |.+.+++++..-+
T Consensus 74 ~~~~~~~~~fv-~~iR~~hP~tPIllv~~~~~~~~~~~~~~~~~~~~~~~~~r~~v~~l~~~g~~nl~~l~g~~l 147 (178)
T PF14606_consen 74 EEFRERLDGFV-KTIREAHPDTPILLVSPIPYPAGYFDNSRGETVEEFREALREAVEQLRKEGDKNLYYLDGEEL 147 (178)
T ss_dssp TTHHHHHHHHH-HHHHTT-SSS-EEEEE----TTTTS--TTS--HHHHHHHHHHHHHHHHHTT-TTEEEE-HHHC
T ss_pred HHHHHHHHHHH-HHHHHhCCCCCEEEEecCCccccccCchHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCchhh
Confidence 34444444444 455566668999999965432 134456777888888 9999999998775
No 140
>PLN02222 phosphoinositide phospholipase C 2
Probab=22.43 E-value=1.6e+02 Score=28.90 Aligned_cols=43 Identities=21% Similarity=0.279 Sum_probs=32.4
Q ss_pred HHHHHHHHhcccccccCCCCCceEEeeCCCCChHHHHHHHHHHhhhCCC
Q 037845 83 DMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNV 131 (314)
Q Consensus 83 ~le~~l~~~~~~~l~~~~~~~~vll~~~~~~~~~~~~~~~~~lfe~~~~ 131 (314)
.++.|=+++|. .+++||||+.....+.++..++++++-+.||=
T Consensus 177 v~~~I~~~aF~------~s~yPvIlslE~Hc~~~qQ~~~a~~~~~~~g~ 219 (581)
T PLN02222 177 CLKAIRAHAFD------VSDYPVVVTLEDHLTPDLQSKVAEMVTEIFGE 219 (581)
T ss_pred HHHHHHHhccc------CCCCCEEEEeecCCCHHHHHHHHHHHHHHHhh
Confidence 34445555552 37899999987777888888899999888775
No 141
>PLN02228 Phosphoinositide phospholipase C
Probab=21.87 E-value=1.7e+02 Score=28.54 Aligned_cols=43 Identities=19% Similarity=0.295 Sum_probs=33.0
Q ss_pred HHHHHHHHhcccccccCCCCCceEEeeCCCCChHHHHHHHHHHhhhCCC
Q 037845 83 DMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNV 131 (314)
Q Consensus 83 ~le~~l~~~~~~~l~~~~~~~~vll~~~~~~~~~~~~~~~~~lfe~~~~ 131 (314)
.++.|-+++|. .+++||||+.....+..+.+++++++-+.||-
T Consensus 180 v~~~I~~~AF~------~s~yPvIlslE~hc~~~qQ~~~a~~~~~~lg~ 222 (567)
T PLN02228 180 CLNAIKDNAFQ------VSDYPVVITLEDHLPPNLQAQVAKMLTKTFRG 222 (567)
T ss_pred HHHHHHHhhcc------CCCCCEEEEeecCCCHHHHHHHHHHHHHHHhH
Confidence 44555556553 37899999987788888888899999887774
No 142
>PTZ00288 glucokinase 1; Provisional
Probab=21.80 E-value=1.6e+02 Score=27.52 Aligned_cols=19 Identities=11% Similarity=-0.008 Sum_probs=16.6
Q ss_pred CCCCeeeechhhhHhhhhc
Q 037845 129 FNVPAMYVAIQAVLSLYAS 147 (314)
Q Consensus 129 ~~~~~v~~~~~~~~a~~~~ 147 (314)
|+++.+.++++-.+.+|+.
T Consensus 128 ~~~~~~~liNDfeA~aygi 146 (405)
T PTZ00288 128 FPPGRSALLNDLEAGAYGV 146 (405)
T ss_pred cCCCeEEEEEhHHHHhCcc
Confidence 8889999999998888874
No 143
>TIGR00039 6PTHBS 6-pyruvoyl tetrahydropterin synthase/QueD family protein. This model has been downgraded from hypothetical_equivalog to subfamily. The animal enzymes are known to be 6-pyruvoyl tetrahydropterin synthase. The function of the bacterial branch of the sequence lineage had been thought to be the same, but many are now taken to be QueD, and enzyme of queuosine biosynthesis. Queuosine is a hypermodified base in the wobble position of some tRNAs in most species. A new model is built to be the QueD equivalog model.
Probab=21.67 E-value=1.2e+02 Score=22.82 Aligned_cols=52 Identities=19% Similarity=0.423 Sum_probs=32.1
Q ss_pred cCCccCCHHHHHHHHHHhcccccccCCCCCceEEeeCCCCChHHHHHHHHHHhhhCC
Q 037845 74 EHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN 130 (314)
Q Consensus 74 ~~g~i~~~~~le~~l~~~~~~~l~~~~~~~~vll~~~~~~~~~~~~~~~~~lfe~~~ 130 (314)
..|++.|+..+++.++.++.+.+ ++..+.-.++......-|.+++++++++.
T Consensus 44 ~~G~viDf~~lk~~~~~~~~~~l-----DH~~Ln~~~~~~~~pT~Enia~~i~~~l~ 95 (124)
T TIGR00039 44 KTGMVMDFSDLKKIVKEVIDEPL-----DHKLLNDDVNYLENPTSENVAVYIFDNLK 95 (124)
T ss_pred CceEEEEHHHHHHHHHHHhccCC-----CCceeccCCCCCCCCCHHHHHHHHHHHHH
Confidence 57899999999999988763312 23333322221222355678888887664
No 144
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=20.83 E-value=3.4e+02 Score=22.45 Aligned_cols=45 Identities=16% Similarity=0.167 Sum_probs=32.2
Q ss_pred ChHHHHHHHHHHhhhCCCCeeeechhh-hHhhhhcCCCeEEEEecCC
Q 037845 114 PKANREKMTQIMFETFNVPAMYVAIQA-VLSLYASGRTTGIVLDSGD 159 (314)
Q Consensus 114 ~~~~~~~~~~~lfe~~~~~~v~~~~~~-~~a~~~~g~~t~lVVDiG~ 159 (314)
....|+ .+..|||..|+...+|.+.. +++.+..+...|+++|+.-
T Consensus 13 D~~vr~-al~~Ll~s~G~~v~~~~s~~~fL~~~~~~~pGclllDvrM 58 (202)
T COG4566 13 DESVRD-ALAFLLESAGFQVKCFASAEEFLAAAPLDRPGCLLLDVRM 58 (202)
T ss_pred cHHHHH-HHHHHHHhCCceeeeecCHHHHHhhccCCCCCeEEEecCC
Confidence 344555 77788999999988877643 4445456678999999863
No 145
>PLN02223 phosphoinositide phospholipase C
Probab=20.67 E-value=1.9e+02 Score=28.04 Aligned_cols=45 Identities=22% Similarity=0.242 Sum_probs=33.0
Q ss_pred HHHHHHHHHhcccccccCCCCCceEEeeCCCCChHHHHHHHHHHhhhCCC
Q 037845 82 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNV 131 (314)
Q Consensus 82 ~~le~~l~~~~~~~l~~~~~~~~vll~~~~~~~~~~~~~~~~~lfe~~~~ 131 (314)
+.++.|=+++|.. .+++||||+.....+.++..++++++-+.||=
T Consensus 179 ~vl~aI~~~AF~~-----s~~yPvIlslE~Hcs~~qQ~~~A~~l~~i~Gd 223 (537)
T PLN02223 179 ECLDAIKEHAFTK-----CRSYPLIITFKDGLKPDLQSKATQMIDQTFGD 223 (537)
T ss_pred HHHHHHHHHhhhc-----CCCCceEEEEcccCCHHHHHHHHHHHHHHHhh
Confidence 3445555555532 24899999987778888888899999887764
No 146
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=20.58 E-value=86 Score=29.14 Aligned_cols=26 Identities=27% Similarity=0.216 Sum_probs=20.7
Q ss_pred CCCeEEEEecCCCceEEEEee-CCeec
Q 037845 148 GRTTGIVLDSGDGVSHTVPIY-EGYAL 173 (314)
Q Consensus 148 g~~t~lVVDiG~~~t~i~pV~-~g~~~ 173 (314)
-.....|+|||.+-+.++-+- +|.+.
T Consensus 265 ~P~vrTIIDIGGQDsK~I~ld~~G~V~ 291 (432)
T TIGR02259 265 YPGTRTVLDIGGQDTKGIQIDDHGIVE 291 (432)
T ss_pred CCCCCEEEEeCCCceEEEEEcCCCcEe
Confidence 356779999999999988886 47665
Done!