BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037847
(542 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 68/150 (45%), Gaps = 8/150 (5%)
Query: 203 EEWEGAKRISLTANGI-----GSLSEIPT--CPRLVTLLLDGNRIEEITDGFFQSLSTLR 255
EE +S NGI GSL+ IP+ + +L L NRI I++ Q L+
Sbjct: 20 EESSNQASLSCDRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQ 79
Query: 256 VLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQE-LKALEKLRYLNLDYAFHLSI 314
L L N + S L SL HLDLS ++ L K L L +LNL + ++
Sbjct: 80 ALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTL 139
Query: 315 IPHQLISCFSKLEVLRLCGCGRFGVIKGKE 344
L S +KL++LR+ F I+ K+
Sbjct: 140 GETSLFSHLTKLQILRVGNMDTFTKIQRKD 169
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 66/142 (46%), Gaps = 8/142 (5%)
Query: 211 ISLTANGI-----GSLSEIPT--CPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNF 263
+S NGI GSL+ IP+ + +L L NRI I++ Q L+ L L N
Sbjct: 2 LSCDRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG 61
Query: 264 PPSTLPSGISGLVSLHHLDLSSTDITGLPQE-LKALEKLRYLNLDYAFHLSIIPHQLISC 322
+ S L SL HLDLS ++ L K L L +LNL + ++ L S
Sbjct: 62 INTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSH 121
Query: 323 FSKLEVLRLCGCGRFGVIKGKE 344
+KL++LR+ F I+ K+
Sbjct: 122 LTKLQILRVGNMDTFTKIQRKD 143
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 8/80 (10%)
Query: 253 TLRVLSLRGNFPPSTLPSG--ISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAF 310
+L+ L LR N S +G + L +L ++D+S +P+ + EK++YLNL
Sbjct: 362 SLQTLILRQNHLASLEKTGETLLTLKNLTNIDISKNSFHSMPETCQWPEKMKYLNLS--- 418
Query: 311 HLSIIPHQLISCFSK-LEVL 329
S H + C K LE+L
Sbjct: 419 --STRIHSVTGCIPKTLEIL 436
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 66/132 (50%), Gaps = 4/132 (3%)
Query: 202 VEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRG 261
++ + ++L N + +S + L L+L GN+++ + +G F L+ L+ L L
Sbjct: 59 IQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE 118
Query: 262 NFPPSTLPSGI-SGLVSLHHLDLSSTDITGLPQEL-KALEKLRYLNLDYAFHLSIIPHQL 319
N S LP G+ L +L +L+L+ + LP+ + L L L+L Y L +P +
Sbjct: 119 NQLQS-LPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN-QLQSLPEGV 176
Query: 320 ISCFSKLEVLRL 331
++L+ LRL
Sbjct: 177 FDKLTQLKDLRL 188
Score = 35.8 bits (81), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 66/147 (44%), Gaps = 9/147 (6%)
Query: 190 VRAGVK---LTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDG 246
++A +K +T+A E +I + I S+ I P + L L GN++ +I+
Sbjct: 22 IKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS-- 79
Query: 247 FFQSLSTLRVLSLRGNFPPSTLPSGI-SGLVSLHHLDLSSTDITGLPQEL-KALEKLRYL 304
+ L+ L L L GN S LP+G+ L +L L L + LP + L L YL
Sbjct: 80 ALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138
Query: 305 NLDYAFHLSIIPHQLISCFSKLEVLRL 331
NL + L +P + + L L L
Sbjct: 139 NLAHN-QLQSLPKGVFDKLTNLTELDL 164
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 4/108 (3%)
Query: 205 WEGAKRISLTANGIGSLSEIPTCPRLVTLL---LDGNRIEEITDGFFQSLSTLRVLSLRG 261
+EG + G+ +L +IP LV L L GNR++ I G FQ L++LR L L
Sbjct: 152 FEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMH 211
Query: 262 NFPPSTLPSGISGLVSLHHLDLSSTDITGLPQEL-KALEKLRYLNLDY 308
+ + L SL L+LS ++ LP +L L +L ++L++
Sbjct: 212 AQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNH 259
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 63/127 (49%), Gaps = 11/127 (8%)
Query: 218 IGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPS-GISGLV 276
+G+ + +P+ L TL L NR+ + F+ LS LR L LR N P ++PS + +
Sbjct: 76 VGAFNGLPS---LNTLELFDNRLTTVPTQAFEYLSKLRELWLRNN-PIESIPSYAFNRVP 131
Query: 277 SLHHLDLSSTDITGLPQE--LKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGC 334
SL LDL E + L LRYLNL +L IP+ ++ +LE L L G
Sbjct: 132 SLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMC-NLKDIPN--LTALVRLEELELSG- 187
Query: 335 GRFGVIK 341
R +I+
Sbjct: 188 NRLDLIR 194
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 228 PRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTD 287
P L L N+I EI DG F++L L L L N P + LV L L LS
Sbjct: 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111
Query: 288 ITGLPQEL-KALEKLR 302
+ LP+++ K L++LR
Sbjct: 112 LKELPEKMPKTLQELR 127
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 58/134 (43%), Gaps = 7/134 (5%)
Query: 185 EQNFLVRAGVKLTEAPKVEE--WEGAKRISLTANGIGSLSEIPTC--PRLVTLLLDGNRI 240
Q +V G ++ +E ++G K++S +++ IP P L L LDGN+I
Sbjct: 145 NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKI 204
Query: 241 EEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKALEK 300
++ + L+ L L L N + ++ L L L++ + +P L
Sbjct: 205 TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVP---GGLAD 261
Query: 301 LRYLNLDYAFHLSI 314
+Y+ + Y + +I
Sbjct: 262 HKYIQVVYLHNNNI 275
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 228 PRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTD 287
P L L N+I EI DG F++L L L L N P + LV L L LS
Sbjct: 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111
Query: 288 ITGLPQEL-KALEKLR 302
+ LP+++ K L++LR
Sbjct: 112 LKELPEKMPKTLQELR 127
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 58/134 (43%), Gaps = 7/134 (5%)
Query: 185 EQNFLVRAGVKLTEAPKVEE--WEGAKRISLTANGIGSLSEIPTC--PRLVTLLLDGNRI 240
Q +V G ++ +E ++G K++S +++ IP P L L LDGN+I
Sbjct: 145 NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKI 204
Query: 241 EEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKALEK 300
++ + L+ L L L N + ++ L L L++ + +P L
Sbjct: 205 TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVP---GGLAD 261
Query: 301 LRYLNLDYAFHLSI 314
+Y+ + Y + +I
Sbjct: 262 HKYIQVVYLHNNNI 275
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 4/96 (4%)
Query: 217 GIGSLSEIPTCPRLVTLL---LDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGIS 273
G+ +L +IP LV L L GNR++ I G FQ L++LR L L + +
Sbjct: 164 GMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFD 223
Query: 274 GLVSLHHLDLSSTDITGLPQEL-KALEKLRYLNLDY 308
L SL L+LS ++ LP +L L +L ++L++
Sbjct: 224 DLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNH 259
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 57/117 (48%), Gaps = 8/117 (6%)
Query: 228 PRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPS-GISGLVSLHHLDLSST 286
P L TL L NR+ + F+ LS LR L LR N P ++PS + + SL LDL
Sbjct: 83 PSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNN-PIESIPSYAFNRVPSLRRLDLGEL 141
Query: 287 DITGLPQE--LKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIK 341
E + L LRYLNL +L IP+ ++ +LE L L G R +I+
Sbjct: 142 KRLEYISEAAFEGLVNLRYLNLGMC-NLKDIPN--LTALVRLEELELSG-NRLDLIR 194
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 7/89 (7%)
Query: 245 DGFFQSLSTLRVLSLRGN-FPPSTLPSGISGLVSLHHLDLSSTDITGL-PQELKALEKLR 302
+G F LS+L VL + GN F + LP + L +L LDLS + L P +L L+
Sbjct: 462 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 521
Query: 303 YLNLDYA--FHLSIIPHQLISCFSKLEVL 329
LN+ + F L P++ C + L+VL
Sbjct: 522 VLNMSHNNFFSLDTFPYK---CLNSLQVL 547
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 42/97 (43%), Gaps = 10/97 (10%)
Query: 228 PRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTD 287
P L L L I+ I DG +QSLS L L L GN S SGL SL L T+
Sbjct: 76 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN 135
Query: 288 ITGLPQ-ELKALEKLRYLNLDYAFHLSIIPHQLISCF 323
+ L + L+ L+ LN + H LI F
Sbjct: 136 LASLENFPIGHLKTLKELN---------VAHNLIQSF 163
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 47/109 (43%), Gaps = 9/109 (8%)
Query: 189 LVRAGVKLTEAPKVEEWEGAKRISLTANGI-----GSLSEIPTCPRLVTLLLDGNRIEEI 243
L R ++ E + + LT N I G+ S + + +LV + + +E
Sbjct: 83 LSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF 142
Query: 244 TDGFFQSLSTLRVLSLRGNFPPS-TLPSGISGLVSLHHLDLSSTDITGL 291
G L TL+ L++ N S LP S L +L HLDLSS I +
Sbjct: 143 PIG---HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 7/89 (7%)
Query: 245 DGFFQSLSTLRVLSLRGN-FPPSTLPSGISGLVSLHHLDLSSTDITGL-PQELKALEKLR 302
+G F LS+L VL + GN F + LP + L +L LDLS + L P +L L+
Sbjct: 438 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 497
Query: 303 YLNLDYA--FHLSIIPHQLISCFSKLEVL 329
LN+ + F L P++ C + L+VL
Sbjct: 498 VLNMSHNNFFSLDTFPYK---CLNSLQVL 523
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 42/97 (43%), Gaps = 10/97 (10%)
Query: 228 PRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTD 287
P L L L I+ I DG +QSLS L L L GN S SGL SL L T+
Sbjct: 52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN 111
Query: 288 ITGLPQ-ELKALEKLRYLNLDYAFHLSIIPHQLISCF 323
+ L + L+ L+ LN + H LI F
Sbjct: 112 LASLENFPIGHLKTLKELN---------VAHNLIQSF 139
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 47/109 (43%), Gaps = 9/109 (8%)
Query: 189 LVRAGVKLTEAPKVEEWEGAKRISLTANGI-----GSLSEIPTCPRLVTLLLDGNRIEEI 243
L R ++ E + + LT N I G+ S + + +LV + + +E
Sbjct: 59 LSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF 118
Query: 244 TDGFFQSLSTLRVLSLRGNFPPS-TLPSGISGLVSLHHLDLSSTDITGL 291
G L TL+ L++ N S LP S L +L HLDLSS I +
Sbjct: 119 PIG---HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 7/89 (7%)
Query: 245 DGFFQSLSTLRVLSLRGN-FPPSTLPSGISGLVSLHHLDLSSTDITGL-PQELKALEKLR 302
+G F LS+L VL + GN F + LP + L +L LDLS + L P +L L+
Sbjct: 143 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 202
Query: 303 YLNLDYA--FHLSIIPHQLISCFSKLEVL 329
LN+ + F L P++ C + L+VL
Sbjct: 203 VLNMSHNNFFSLDTFPYK---CLNSLQVL 228
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
Query: 221 LSEIPT-CPRLVTLL-LDGNRIEEITDGFFQSLSTLRVLSLRGN---FPPSTLPSGISGL 275
L+ +PT P T L L+ N+++ + G F L+ L LSL N F S G
Sbjct: 19 LTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDF-GT 77
Query: 276 VSLHHLDLSSTDITGLPQELKALEKLRYLNLDYA 309
SL +LDLS + + LE+L +L+ ++
Sbjct: 78 TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS 111
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 48/100 (48%), Gaps = 2/100 (2%)
Query: 233 LLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGL- 291
L L N ++ + D F+ L L L L GN PS GL SL L L + +
Sbjct: 133 LYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVH 192
Query: 292 PQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRL 331
P + L +L L L +A +LS++P +++ L+ LRL
Sbjct: 193 PHAFRDLGRLMTLYL-FANNLSMLPAEVLVPLRSLQYLRL 231
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Query: 233 LLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGL- 291
+ L GNRI + FQS L +L L N + +GL L LDLS +
Sbjct: 36 IFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVV 95
Query: 292 -PQELKALEKLRYLNLD 307
P + L L L+LD
Sbjct: 96 DPTTFRGLGHLHTLHLD 112
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 118/283 (41%), Gaps = 42/283 (14%)
Query: 211 ISLTANGIGSLS--EIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTL 268
+ L N I +L+ E + P L L L+ N + + G F +L LR L LR N +
Sbjct: 37 LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLKLI 95
Query: 269 PSGI-SGLVSLHHLDLSSTDITGLP----QELKALEKLRYLNLDYAFHLSIIPHQLISCF 323
P G+ +GL +L LD+S I L Q+L L+ L + D + I H+ S
Sbjct: 96 PLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVY----ISHRAFSGL 151
Query: 324 SKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMK----ELLGLKHLNVLSWSFGSSLAVQ 379
+ LE L L C N+ E L +L L+HLN+ +++
Sbjct: 152 NSLEQLTLEKC-----------NLTSIPTEALSHLHGLIVLRLRHLNI------NAIRDY 194
Query: 380 KFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVK 439
F + +L + S W T T N L Y NL L + CNL + + V+
Sbjct: 195 SFKRLYRLKVLEISHWPYLDTMTP---NCL---YGLNLTSLSITHCNLTAVPYLA---VR 245
Query: 440 KLFRNGFRNLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTME 482
L F NL+ + + G L L+ +Q ++ + Q +E
Sbjct: 246 HLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVE 288
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 60/122 (49%), Gaps = 5/122 (4%)
Query: 195 KLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTL 254
+T+A + +G +S G+ ++ I L+ L L N+I ++T ++L+ +
Sbjct: 36 NVTDAVTQADLDGIATLSAFNTGVTTIEGIQYLNNLIGLELKDNQITDLTP--LKNLTKI 93
Query: 255 RVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSI 314
L L GN P S I+GL S+ LDL+ST IT + L L L+ L LD +I
Sbjct: 94 TELELSGN--PLKNVSAIAGLQSIKTLDLTSTQITDV-TPLAGLSNLQVLYLDLNQITNI 150
Query: 315 IP 316
P
Sbjct: 151 SP 152
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 64/143 (44%), Gaps = 21/143 (14%)
Query: 230 LVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGI-SGLVSLHHLDLSSTDI 288
L L L GN+++ + +G F L++L L+L N S LP+G+ L L L L++ +
Sbjct: 54 LTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS-LPNGVFDKLTQLKELALNTNQL 112
Query: 289 TGLPQEL-KALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRL------CGCGRF---- 337
LP + L +L+ L L Y L +P + + L+ + L C C
Sbjct: 113 QSLPDGVFDKLTQLKDLRL-YQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLS 171
Query: 338 -------GVIKGKEGNVLCDGAE 353
GV++ G+V D A+
Sbjct: 172 EWINKHSGVVRNSAGSVAPDSAK 194
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 8/92 (8%)
Query: 215 ANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISG 274
NGI ++ + P+L +L L N+I +IT L+ L LSL N +P ++G
Sbjct: 118 HNGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP--LAG 173
Query: 275 LVSLHHLDLSSTDITGLPQELKALEKLRYLNL 306
L L +L LS I+ +L+AL L+ L++
Sbjct: 174 LTKLQNLYLSKNHIS----DLRALAGLKNLDV 201
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 47/105 (44%), Gaps = 1/105 (0%)
Query: 228 PRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTD 287
P L L L I+ I DG +QSLS L L L GN S SGL SL L T+
Sbjct: 54 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN 113
Query: 288 ITGLPQ-ELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRL 331
+ L + L+ L+ LN+ + S + S + LE L L
Sbjct: 114 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 158
Score = 32.0 bits (71), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 37/89 (41%), Gaps = 27/89 (30%)
Query: 229 RLVTLLLDGNRIEEITDGFFQSLSTLRVL--------SLRGNFPPS-------------- 266
L TL+L GN I+ + G F LS+L+ L SL NFP
Sbjct: 79 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE-NFPIGHLKTLKELNVAHNL 137
Query: 267 ----TLPSGISGLVSLHHLDLSSTDITGL 291
LP S L +L HLDLSS I +
Sbjct: 138 IQSFKLPEYFSNLTNLEHLDLSSNKIQSI 166
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 63/132 (47%), Gaps = 4/132 (3%)
Query: 202 VEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRG 261
++ + ++L N + +S + L L+L GN+++ + +G F L+ L+ L L
Sbjct: 59 IQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE 118
Query: 262 NFPPSTLPSGI-SGLVSLHHLDLSSTDITGLPQEL-KALEKLRYLNLDYAFHLSIIPHQL 319
N S LP G+ L +L +L L + LP+ + L L L+LD L +P +
Sbjct: 119 NQLQS-LPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNN-QLQSLPEGV 176
Query: 320 ISCFSKLEVLRL 331
++L+ L L
Sbjct: 177 FDKLTQLKQLSL 188
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 9/147 (6%)
Query: 190 VRAGVK---LTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDG 246
++A +K +T+A E +I + I S+ I P + L L GN++ +I+
Sbjct: 22 IKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS-- 79
Query: 247 FFQSLSTLRVLSLRGNFPPSTLPSGI-SGLVSLHHLDLSSTDITGLPQEL-KALEKLRYL 304
+ L+ L L L GN S LP+G+ L +L L L + LP + L L YL
Sbjct: 80 ALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138
Query: 305 NLDYAFHLSIIPHQLISCFSKLEVLRL 331
L Y L +P + + L L L
Sbjct: 139 YL-YHNQLQSLPKGVFDKLTNLTRLDL 164
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 11/89 (12%)
Query: 229 RLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGI-SGLVSLHHL------ 281
L L LD N+++ + +G F L+ L+ LSL N S +P G+ L SL H+
Sbjct: 158 NLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKS-VPDGVFDRLTSLTHIWLLNNP 216
Query: 282 -DLSSTDITGLPQELKALEKL--RYLNLD 307
D + +DI L + + L YLNLD
Sbjct: 217 WDCACSDILYLSRWISQHPGLVFGYLNLD 245
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Query: 225 PTCPR-LVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGN-FPPSTLPSGISGLVSLHHLD 282
P P LV L + NRI ++ G F L + + + GN S G + L++L
Sbjct: 119 PNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLR 178
Query: 283 LSSTDITGLPQELKALEKLRYLNLDY 308
+S +TG+P++L E L L+LD+
Sbjct: 179 ISEAKLTGIPKDLP--ETLNELHLDH 202
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 55/120 (45%), Gaps = 4/120 (3%)
Query: 172 EMSLWIACTVDKEEQNFLVRAGVKLTEAPKVEEWEGAKRISLTANGIGS--LSEIPTCPR 229
E S + D + N+L + KLT PK + E + L N I + L ++ +
Sbjct: 160 ENSGFEPGAFDGLKLNYLRISEAKLTGIPK-DLPETLNELHLDHNKIQAIELEDLLRYSK 218
Query: 230 LVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDIT 289
L L L N+I I +G L TLR L L N S +P+G+ L L + L + +IT
Sbjct: 219 LYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTNNIT 277
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 47/105 (44%), Gaps = 1/105 (0%)
Query: 228 PRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTD 287
P L L L I+ I DG +QSLS L L L GN S SGL SL L T+
Sbjct: 53 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN 112
Query: 288 ITGLPQ-ELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRL 331
+ L + L+ L+ LN+ + S + S + LE L L
Sbjct: 113 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 157
Score = 32.0 bits (71), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 37/89 (41%), Gaps = 27/89 (30%)
Query: 229 RLVTLLLDGNRIEEITDGFFQSLSTLRVL--------SLRGNFPPS-------------- 266
L TL+L GN I+ + G F LS+L+ L SL NFP
Sbjct: 78 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE-NFPIGHLKTLKELNVAHNL 136
Query: 267 ----TLPSGISGLVSLHHLDLSSTDITGL 291
LP S L +L HLDLSS I +
Sbjct: 137 IQSFKLPEYFSNLTNLEHLDLSSNKIQSI 165
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 51/100 (51%), Gaps = 5/100 (5%)
Query: 193 GVKLTEAPK-VEEWEGAKRISLTANGIGSLSE--IPTCPRLVTLLLDGNRIEEITDGFFQ 249
G + T PK + ++ I L+ N I +LS +L+TL+L NR+ I F
Sbjct: 40 GNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFD 99
Query: 250 SLSTLRVLSLRGNFPPSTLPSG-ISGLVSLHHLDLSSTDI 288
L +LR+LSL GN S +P G + L +L HL + + +
Sbjct: 100 GLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGANPL 138
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 47/105 (44%), Gaps = 1/105 (0%)
Query: 228 PRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTD 287
P L L L I+ I DG +QSLS L L L GN S SGL SL L T+
Sbjct: 53 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN 112
Query: 288 ITGLPQ-ELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRL 331
+ L + L+ L+ LN+ + S + S + LE L L
Sbjct: 113 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 157
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 37/89 (41%), Gaps = 27/89 (30%)
Query: 229 RLVTLLLDGNRIEEITDGFFQSLSTLRVL--------SLRGNFPPS-------------- 266
L TL+L GN I+ + G F LS+L+ L SL NFP
Sbjct: 78 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE-NFPIGHLKTLKELNVAHNL 136
Query: 267 ----TLPSGISGLVSLHHLDLSSTDITGL 291
LP S L +L HLDLSS I +
Sbjct: 137 IQSFKLPEYFSNLTNLEHLDLSSNKIQSI 165
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 8/92 (8%)
Query: 215 ANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISG 274
NGI ++ + P+L +L L N+I +IT L+ L LSL N +P ++G
Sbjct: 121 HNGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP--LAG 176
Query: 275 LVSLHHLDLSSTDITGLPQELKALEKLRYLNL 306
L L +L LS I+ +L+AL L+ L++
Sbjct: 177 LTKLQNLYLSKNHIS----DLRALAGLKNLDV 204
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 47/105 (44%), Gaps = 1/105 (0%)
Query: 228 PRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTD 287
P L L L I+ I DG +QSLS L L L GN S SGL SL L T+
Sbjct: 52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN 111
Query: 288 ITGLPQ-ELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRL 331
+ L + L+ L+ LN+ + S + S + LE L L
Sbjct: 112 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156
Score = 32.0 bits (71), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 37/89 (41%), Gaps = 27/89 (30%)
Query: 229 RLVTLLLDGNRIEEITDGFFQSLSTLRVL--------SLRGNFPPS-------------- 266
L TL+L GN I+ + G F LS+L+ L SL NFP
Sbjct: 77 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE-NFPIGHLKTLKELNVAHNL 135
Query: 267 ----TLPSGISGLVSLHHLDLSSTDITGL 291
LP S L +L HLDLSS I +
Sbjct: 136 IQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 47/105 (44%), Gaps = 1/105 (0%)
Query: 228 PRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTD 287
P L L L I+ I DG +QSLS L L L GN S SGL SL L T+
Sbjct: 52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN 111
Query: 288 ITGLPQ-ELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRL 331
+ L + L+ L+ LN+ + S + S + LE L L
Sbjct: 112 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 17/124 (13%)
Query: 245 DGFFQSLSTLRVLSLRGN-FPPSTLPSGISGLVSLHHLDLSSTDITGL-PQELKALEKLR 302
+G F LS+L VL + GN F + LP + L +L LDLS + L P +L L+
Sbjct: 438 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 497
Query: 303 YLNLDYAFHLSIIPHQLISCFSKLEVLRL------CGCGRFGVI--------KGKEGNVL 348
LN+ + L +P + + L+ + L C C R + + ++G+
Sbjct: 498 VLNM-ASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAK 556
Query: 349 CDGA 352
C G+
Sbjct: 557 CSGS 560
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 37/89 (41%), Gaps = 27/89 (30%)
Query: 229 RLVTLLLDGNRIEEITDGFFQSLSTLRVL--------SLRGNFPPS-------------- 266
L TL+L GN I+ + G F LS+L+ L SL NFP
Sbjct: 77 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE-NFPIGHLKTLKELNVAHNL 135
Query: 267 ----TLPSGISGLVSLHHLDLSSTDITGL 291
LP S L +L HLDLSS I +
Sbjct: 136 IQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 8/92 (8%)
Query: 215 ANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISG 274
NGI ++ + P+L +L L N+I +IT L+ L LSL N +P ++G
Sbjct: 119 HNGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP--LAG 174
Query: 275 LVSLHHLDLSSTDITGLPQELKALEKLRYLNL 306
L L +L LS I+ +L+AL L+ L++
Sbjct: 175 LTKLQNLYLSKNHIS----DLRALAGLKNLDV 202
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 47/105 (44%), Gaps = 1/105 (0%)
Query: 228 PRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTD 287
P L L L I+ I DG +QSLS L L L GN S SGL SL L T+
Sbjct: 54 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETN 113
Query: 288 ITGLPQ-ELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRL 331
+ L + L+ L+ LN+ + S + S + LE L L
Sbjct: 114 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 158
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 37/89 (41%), Gaps = 27/89 (30%)
Query: 229 RLVTLLLDGNRIEEITDGFFQSLSTLRVL--------SLRGNFPPS-------------- 266
L TL+L GN I+ + G F LS+L+ L SL NFP
Sbjct: 79 HLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLASLE-NFPIGHLKTLKELNVAHNL 137
Query: 267 ----TLPSGISGLVSLHHLDLSSTDITGL 291
LP S L +L HLDLSS I +
Sbjct: 138 IQSFKLPEYFSNLTNLEHLDLSSNKIQSI 166
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 8/92 (8%)
Query: 215 ANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISG 274
NGI ++ + P+L +L L N+I +IT L+ L LSL N +P ++G
Sbjct: 139 HNGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP--LAG 194
Query: 275 LVSLHHLDLSSTDITGLPQELKALEKLRYLNL 306
L L +L LS I+ +L+AL L+ L++
Sbjct: 195 LTKLQNLYLSKNHIS----DLRALAGLKNLDV 222
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 8/92 (8%)
Query: 215 ANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISG 274
NGI ++ + P+L +L L N+I +IT L+ L LSL N +P ++G
Sbjct: 139 HNGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP--LAG 194
Query: 275 LVSLHHLDLSSTDITGLPQELKALEKLRYLNL 306
L L +L LS I+ +L+AL L+ L++
Sbjct: 195 LTKLQNLYLSKNHIS----DLRALAGLKNLDV 222
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 8/92 (8%)
Query: 215 ANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISG 274
NGI ++ + P+L +L L N+I +IT L+ L LSL N +P ++G
Sbjct: 121 HNGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP--LAG 176
Query: 275 LVSLHHLDLSSTDITGLPQELKALEKLRYLNL 306
L L +L LS I+ +L+AL L+ L++
Sbjct: 177 LTKLQNLYLSKNHIS----DLRALAGLKNLDV 204
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 8/92 (8%)
Query: 215 ANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISG 274
NGI ++ + P+L +L L N+I +IT L+ L LSL N +P ++G
Sbjct: 139 HNGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP--LAG 194
Query: 275 LVSLHHLDLSSTDITGLPQELKALEKLRYLNL 306
L L +L LS I+ +L+AL L+ L++
Sbjct: 195 LTKLQNLYLSKNHIS----DLRALAGLKNLDV 222
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 8/92 (8%)
Query: 215 ANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISG 274
NGI ++ + P+L +L L N+I +IT L+ L LSL N +P ++G
Sbjct: 116 HNGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP--LAG 171
Query: 275 LVSLHHLDLSSTDITGLPQELKALEKLRYLNL 306
L L +L LS I+ +L+AL L+ L++
Sbjct: 172 LTKLQNLYLSKNHIS----DLRALAGLKNLDV 199
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 36.2 bits (82), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 8/92 (8%)
Query: 215 ANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISG 274
NGI ++ + P+L +L L N+I +IT L+ L LSL N +P ++G
Sbjct: 141 HNGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP--LAG 196
Query: 275 LVSLHHLDLSSTDITGLPQELKALEKLRYLNL 306
L L +L LS I+ +L+AL L+ L++
Sbjct: 197 LTKLQNLYLSKNHIS----DLRALAGLKNLDV 224
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 35.8 bits (81), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 77/194 (39%), Gaps = 41/194 (21%)
Query: 208 AKRISLTANGIGSL-SEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPS 266
+ + LTA + L S I L L+L+ N +++ S +LR L ++GN
Sbjct: 279 VQELDLTAAHLNGLPSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGNMRKL 338
Query: 267 TLPSG-ISGLVSLHHLDLSSTDITG---LPQELKALEKLRYLNLDY---------AF--- 310
L + + L +L LDLS +DI +LK L L+YLNL Y AF
Sbjct: 339 DLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKEC 398
Query: 311 -----------HLSI-IPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKE 358
HL + PH L VL L C +L + L+
Sbjct: 399 PQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHC------------LLDTSNQHLLAG 446
Query: 359 LLGLKHLNVLSWSF 372
L L+HLN+ SF
Sbjct: 447 LQDLRHLNLQGNSF 460
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 12/118 (10%)
Query: 233 LLLDGNRIEEIT---DGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDIT 289
L L GN ++ + Q + +L +L L S GL +++HLDLS +T
Sbjct: 453 LNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLT 512
Query: 290 GLPQELKALEKLRYLNLDYAF-HLSIIPHQLISCFSKLEVLRL------CGCGRFGVI 340
G + AL L+ L L+ A ++ IIP L+ S+ ++ L C C I
Sbjct: 513 G--DSMDALSHLKGLYLNMASNNIRIIPPHLLPALSQQSIINLSHNPLDCTCSNIHFI 568
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 35.8 bits (81), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 56/125 (44%), Gaps = 3/125 (2%)
Query: 220 SLSEIPT--CPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVS 277
S + IP+ + +L L N+I I G ++ + L+VL L+ + + L S
Sbjct: 42 SFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGS 101
Query: 278 LHHLDLSSTDITGLPQE-LKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGR 336
L HLDLS ++ L L L+YLNL + ++ L + L+ LR+
Sbjct: 102 LEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVET 161
Query: 337 FGVIK 341
F I+
Sbjct: 162 FSEIR 166
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 35.8 bits (81), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 56/125 (44%), Gaps = 3/125 (2%)
Query: 220 SLSEIPT--CPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVS 277
S + IP+ + +L L N+I I G ++ + L+VL L+ + + L S
Sbjct: 16 SFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGS 75
Query: 278 LHHLDLSSTDITGLPQE-LKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGR 336
L HLDLS ++ L L L+YLNL + ++ L + L+ LR+
Sbjct: 76 LEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVET 135
Query: 337 FGVIK 341
F I+
Sbjct: 136 FSEIR 140
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 35.8 bits (81), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 53/108 (49%), Gaps = 7/108 (6%)
Query: 229 RLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPS-GISGLVSLHHLDLSSTD 287
L TL L NR+ I +G F LS L+ L LR N P ++PS + + SL LDL
Sbjct: 113 NLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELK 171
Query: 288 ITGLPQE--LKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCG 333
E + L LRYLNL +L IP+ ++ KL+ L L G
Sbjct: 172 RLSYISEGAFEGLSNLRYLNLAMC-NLREIPN--LTPLIKLDELDLSG 216
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 35.0 bits (79), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 6/119 (5%)
Query: 190 VRAG-VKLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFF 248
+ AG +T+ + +G +S G+ ++ + L+ L L N+I ++
Sbjct: 24 IAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--L 81
Query: 249 QSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLD 307
++L+ + L L GN P S I+GL S+ LDL+ST IT + L L L+ L LD
Sbjct: 82 KNLTKITELELSGN--PLKNVSAIAGLQSIKTLDLTSTQITDV-TPLAGLSNLQVLYLD 137
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 65/138 (47%), Gaps = 7/138 (5%)
Query: 191 RAGVKLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQS 250
R G+K + VE +I+ + N + ++ + +LV +L++ N+I +IT +
Sbjct: 50 RLGIKSIDG--VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LAN 105
Query: 251 LSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAF 310
L+ L L+L N P + L +L+ L+LSS I+ + L L L+ LN
Sbjct: 106 LTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI-SALSGLTSLQQLNFSSNQ 162
Query: 311 HLSIIPHQLISCFSKLEV 328
+ P ++ +L++
Sbjct: 163 VTDLKPLANLTTLERLDI 180
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 62/134 (46%), Gaps = 5/134 (3%)
Query: 195 KLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTL 254
++T+ + +R+ +++N + +S + L +L+ N+I +IT L+ L
Sbjct: 162 QVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGILTNL 219
Query: 255 RVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSI 314
LSL GN ++ L +L LDL++ I+ L L L KL L L +I
Sbjct: 220 DELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNL-APLSGLTKLTELKLGANQISNI 276
Query: 315 IPHQLISCFSKLEV 328
P ++ + LE+
Sbjct: 277 SPLAGLTALTNLEL 290
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 198 EAPKVEEWEGAKRISLTANGIGSLSE--IPTCPRLVTLLLDGNRIEEITDGFFQSLSTLR 255
E E G I LT+N + ++ L TL+L NRI + + F LS++R
Sbjct: 73 EEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVR 132
Query: 256 VLSLRGNFPPSTLPSGISGLVSLHHLDL 283
+LSL N + P L SL L+L
Sbjct: 133 LLSLYDNQITTVAPGAFDTLHSLSTLNL 160
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 33.9 bits (76), Expect = 0.23, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 220 SLSEIPTCPRLVT--LLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGI-SGLV 276
SL+ +PT T L L NRI ++ G F L+ L L L N + LP+G+ L
Sbjct: 20 SLASVPTGIPTTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLT 78
Query: 277 SLHHLDLSSTDITGLPQELKALEKLRYL 304
L L L+ + +P+ A + LR L
Sbjct: 79 QLTQLSLNDNQLKSIPR--GAFDNLRSL 104
Score = 30.0 bits (66), Expect = 3.8, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 9/89 (10%)
Query: 229 RLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHL------- 281
+L L LD N++ + G F L+ L LSL N S L SL H+
Sbjct: 55 QLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLNNPW 114
Query: 282 DLSSTDITGLPQELKALEKL--RYLNLDY 308
D + +DI L + + L YLNLD+
Sbjct: 115 DCACSDILYLSRWISQHPWLVFGYLNLDH 143
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 82/329 (24%), Positives = 131/329 (39%), Gaps = 71/329 (21%)
Query: 204 EWEGAKRISLTAN-----GIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLS 258
+W ++ L+ N G GS S +P+ L L L+ N I+ ++ F LS LR LS
Sbjct: 246 KWTNLTQLDLSYNNLHDVGNGSFSYLPS---LRYLSLEYNNIQRLSPRSFYGLSNLRYLS 302
Query: 259 LRGNFP---------------------------------PSTLPSGISGLVSLHHLDLSS 285
L+ F PST + +GLVSL +L LS
Sbjct: 303 LKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSK 362
Query: 286 --TDITGLPQEL---KALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVI 340
T + L E A L LNL H+S I + FS L LR+ G +
Sbjct: 363 TFTSLQTLTNETFVSLAHSPLLTLNLTKN-HISKIAN---GTFSWLGQLRILDLGLNEIE 418
Query: 341 KGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGS--SLAVQKFLKYPKLVSIT-QSVWVE 397
+ G +E GL+++ + S+ L+ F P L + + V ++
Sbjct: 419 QKLSG-----------QEWRGLRNIFEIYLSYNKYLQLSTSSFALVPSLQRLMLRRVALK 467
Query: 398 CGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVL--R 455
+ PF L NL L+L + N+ + D E ++ L F++ N L R
Sbjct: 468 NVDISPSPFRPL-----RNLTILDLSNNNIANINEDLLEGLENLEILDFQHNNLARLWKR 522
Query: 456 SCRGKDLTWLVFVQNLKQLNMQGFTMEEI 484
+ G + +L + +L LN++ ++EI
Sbjct: 523 ANPGGPVNFLKGLSHLHILNLESNGLDEI 551
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 57/115 (49%), Gaps = 7/115 (6%)
Query: 191 RAGVKLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQS 250
R G+K + VE +I+ + N + ++ + +LV +L++ N+I +IT +
Sbjct: 50 RLGIKSIDG--VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LAN 105
Query: 251 LSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLN 305
L+ L L+L N P + L +L+ L+LSS I+ + L L L+ LN
Sbjct: 106 LTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI-SALSGLTSLQQLN 157
Score = 32.0 bits (71), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 5/136 (3%)
Query: 193 GVKLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLS 252
G ++T+ + +R+ +++N + +S + L +L+ N+I +IT L+
Sbjct: 159 GNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGILT 216
Query: 253 TLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHL 312
L LSL GN ++ L +L LDL++ I+ L L L KL L L
Sbjct: 217 NLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNL-APLSGLTKLTELKLGANQIS 273
Query: 313 SIIPHQLISCFSKLEV 328
+I P ++ + LE+
Sbjct: 274 NISPLAGLTALTNLEL 289
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 57/115 (49%), Gaps = 7/115 (6%)
Query: 191 RAGVKLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQS 250
R G+K + VE +I+ + N + ++ + +LV +L++ N+I +IT +
Sbjct: 50 RLGIKSIDG--VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LAN 105
Query: 251 LSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLN 305
L+ L L+L N P + L +L+ L+LSS I+ + L L L+ LN
Sbjct: 106 LTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI-SALSGLTSLQQLN 157
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 5/136 (3%)
Query: 193 GVKLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLS 252
G ++T+ + +R+ +++N + +S + L +L+ N+I +IT L+
Sbjct: 159 GNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGILT 216
Query: 253 TLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHL 312
L LSL GN ++ L +L LDL++ I+ L L L KL L L
Sbjct: 217 NLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNL-APLSGLTKLTELKLGANQIS 273
Query: 313 SIIPHQLISCFSKLEV 328
+I P ++ + LE+
Sbjct: 274 NISPLAGLTALTNLEL 289
>pdb|1A9N|A Chain A, Crystal Structure Of The Spliceosomal U2b''-U2a' Protein
Complex Bound To A Fragment Of U2 Small Nuclear Rna
pdb|1A9N|C Chain C, Crystal Structure Of The Spliceosomal U2b''-U2a' Protein
Complex Bound To A Fragment Of U2 Small Nuclear Rna
Length = 176
Score = 33.1 bits (74), Expect = 0.38, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 26/52 (50%)
Query: 211 ISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGN 262
I + N I L P RL TLL++ NRI I +G Q+L L L L N
Sbjct: 47 IDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNN 98
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 32.7 bits (73), Expect = 0.55, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 6/89 (6%)
Query: 224 IPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGI-SGLVSLHHLD 282
IPT +++ L + N+I ++ G F SL+ L L+L N + LP G+ L L HL
Sbjct: 38 IPTTTQVLHLYI--NQITKLEPGVFDSLTQLTYLNLAVN-QLTALPVGVFDKLTKLTHLA 94
Query: 283 LSSTDITGLPQELKALEKLRYLNLDYAFH 311
L + +P + + L+ L Y F+
Sbjct: 95 LHINQLKSIP--MGVFDNLKSLTHIYLFN 121
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Query: 219 GSLSEIP-----TCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGN 262
LS +P P+L TL + N +E I D FQ+ ++L+ L L N
Sbjct: 133 NDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN 181
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 56/136 (41%), Gaps = 12/136 (8%)
Query: 195 KLTEAPKVEEWEGAKRISLTANGIGSL--SEIPTCPRLVTLLLDGNRIEEITDGFFQSLS 252
LT PK + K +SL+ N I L +I L L L NRI + F
Sbjct: 42 NLTHVPK-DLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQ 100
Query: 253 TLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLP--QELKALEKLRYLNLDYA- 309
L L + N + + SL HLDLS D LP +E L KL +L L A
Sbjct: 101 DLEYLDVSHNRLQNI---SCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK 157
Query: 310 -FHLSIIP--HQLISC 322
L ++P H +SC
Sbjct: 158 FRQLDLLPVAHLHLSC 173
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 5/92 (5%)
Query: 215 ANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISG 274
NGI ++ + P+L +L L N+I +IT L+ L LSL N +P ++
Sbjct: 119 HNGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQIRRIVP--LAR 174
Query: 275 LVSLHHLDLSSTDITGLPQELKALEKLRYLNL 306
L L +L LS I+ L + L+ L+ L L L
Sbjct: 175 LTKLQNLYLSKNHISDL-RALRGLKNLDVLEL 205
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 8/101 (7%)
Query: 208 AKRISLTANGIGSLSE--IPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPP 265
A R+ L +N + SL +L L L N+I+ + DG F L+ L +L L N
Sbjct: 30 ATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ 89
Query: 266 STLPSGI-SGLVSLHHLDLSSTDITGLP----QELKALEKL 301
S LP+G+ L L L L + + +P L +L+K+
Sbjct: 90 S-LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKI 129
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 10/81 (12%)
Query: 233 LLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLS------ST 286
+ L GNRI + F++ L +L L N + +GL L LDLS S
Sbjct: 36 IFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV 95
Query: 287 DITGLPQELKALEKLRYLNLD 307
D P L +L L+LD
Sbjct: 96 D----PATFHGLGRLHTLHLD 112
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 56/133 (42%), Gaps = 26/133 (19%)
Query: 191 RAGVKLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQS 250
R G+K + VE +I+ + N + ++ + +LV +L++ N+I +IT +
Sbjct: 50 RLGIKSIDG--VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LAN 105
Query: 251 LSTLRVLSLRGNFPPSTLP--------------------SGISGLVSLHHLDLSSTDITG 290
L+ L L+L N P S +SGL SL L SS +T
Sbjct: 106 LTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTD 165
Query: 291 LP--QELKALEKL 301
L L LE+L
Sbjct: 166 LKPLANLTTLERL 178
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 62/134 (46%), Gaps = 5/134 (3%)
Query: 195 KLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTL 254
++T+ + +R+ +++N + +S + L +L+ N+I +IT L+ L
Sbjct: 162 QVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGILTNL 219
Query: 255 RVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSI 314
LSL GN ++ L +L LDL++ I+ L L L KL L L +I
Sbjct: 220 DELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNL-APLSGLTKLTELKLGANQISNI 276
Query: 315 IPHQLISCFSKLEV 328
P ++ + LE+
Sbjct: 277 SPLAGLTALTNLEL 290
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 61/118 (51%), Gaps = 10/118 (8%)
Query: 191 RAGVKLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQS 250
R G+K + VE +I+ + N + ++ + +LV +L++ N+I +IT +
Sbjct: 55 RLGIKSIDG--VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LAN 110
Query: 251 LSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSS---TDITGLPQELKALEKLRYLN 305
L+ L L+L N P + L +L+ L+LSS +DI+ L L +L++L + N
Sbjct: 111 LTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISAL-SGLTSLQQLSFGN 165
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 5/136 (3%)
Query: 193 GVKLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLS 252
G ++T+ + +R+ +++N + +S + L +L+ N+I +IT L+
Sbjct: 164 GNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGILT 221
Query: 253 TLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHL 312
L LSL GN ++ L +L LDL++ I+ L L L KL L L
Sbjct: 222 NLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNL-APLSGLTKLTELKLGANQIS 278
Query: 313 SIIPHQLISCFSKLEV 328
+I P ++ + LE+
Sbjct: 279 NISPLAGLTALTNLEL 294
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 10/81 (12%)
Query: 233 LLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLS------ST 286
+ L GNRI + F++ L +L L N + +GL L LDLS S
Sbjct: 37 IFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV 96
Query: 287 DITGLPQELKALEKLRYLNLD 307
D P L +L L+LD
Sbjct: 97 D----PATFHGLGRLHTLHLD 113
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 32.3 bits (72), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Query: 211 ISLTANGIGSLSEI-PTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLP 269
+ L+ N + SL + T P L L + NR+ + G + L L+ L L+GN + P
Sbjct: 82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP 141
Query: 270 SGISGLVSLHHLDLSSTDITGLPQE-LKALEKLRYL 304
++ L L L++ D+T LP L LE L L
Sbjct: 142 GLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTL 177
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 56/133 (42%), Gaps = 26/133 (19%)
Query: 191 RAGVKLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQS 250
R G+K + VE +I+ + N + ++ + +LV +L++ N+I +IT +
Sbjct: 50 RLGIKSIDG--VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LAN 105
Query: 251 LSTLRVLSLRGNFPPSTLP--------------------SGISGLVSLHHLDLSSTDITG 290
L+ L L+L N P S +SGL SL L SS +T
Sbjct: 106 LTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTD 165
Query: 291 LP--QELKALEKL 301
L L LE+L
Sbjct: 166 LKPLANLTTLERL 178
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 5/120 (4%)
Query: 209 KRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTL 268
+R+ +++N + +S + L +L+ N+I +IT L+ L LSL GN
Sbjct: 176 ERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI- 232
Query: 269 PSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEV 328
++ L +L LDL++ I+ L L L KL L L +I P ++ + LE+
Sbjct: 233 -GTLASLTNLTDLDLANNQISNL-APLSGLTKLTELKLGANQISNISPLAGLTALTNLEL 290
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 61/118 (51%), Gaps = 10/118 (8%)
Query: 191 RAGVKLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQS 250
R G+K + VE +I+ + N + ++ + +LV +L++ N+I +IT +
Sbjct: 54 RLGIKSIDG--VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LAN 109
Query: 251 LSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSS---TDITGLPQELKALEKLRYLN 305
L+ L L+L N P + L +L+ L+LSS +DI+ L L +L++L + N
Sbjct: 110 LTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISAL-SGLTSLQQLSFGN 164
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 5/136 (3%)
Query: 193 GVKLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLS 252
G ++T+ + +R+ +++N + +S + L +L+ N+I +IT L+
Sbjct: 163 GNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGILT 220
Query: 253 TLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHL 312
L LSL GN ++ L +L LDL++ I+ L L L KL L L
Sbjct: 221 NLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNL-APLSGLTKLTELKLGANQIS 277
Query: 313 SIIPHQLISCFSKLEV 328
+I P ++ + LE+
Sbjct: 278 NISPLAGLTALTNLEL 293
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Query: 219 GSLSEIP-----TCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGN 262
LS +P P+L TL + N +E I D FQ+ ++L+ L L N
Sbjct: 127 NDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN 175
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 51/114 (44%), Gaps = 12/114 (10%)
Query: 230 LVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGIS---------GLVSLHH 280
L TL L N + + SL+ LR LS+R + LP ++ GLV+L
Sbjct: 129 LETLTLARNPLRALP-ASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQS 187
Query: 281 LDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGC 334
L L T I LP + L+ L+ L + + ++ P I KLE L L GC
Sbjct: 188 LRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGP--AIHHLPKLEELDLRGC 239
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 8/92 (8%)
Query: 215 ANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISG 274
NGI ++ + P+L +L L N+I +IT L+ L LSL N +P ++
Sbjct: 116 HNGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP--LAC 171
Query: 275 LVSLHHLDLSSTDITGLPQELKALEKLRYLNL 306
L L +L LS I+ +L+AL L+ L++
Sbjct: 172 LTKLQNLYLSKNHIS----DLRALCGLKNLDV 199
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 254 LRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYL 304
L L L GN + LP+ I L +L LDLS +T LP EL + +L+Y
Sbjct: 249 LTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYF 298
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 65/174 (37%), Gaps = 35/174 (20%)
Query: 180 TVDKEEQNFLVRAGVKLTEAPKVEEWEGAKRISLTANGIGSLSEIP----TCPRLVTLLL 235
T+D NF L + PK E + L NG +IP C LV+L L
Sbjct: 369 TLDLSSNNFSGPILPNLCQNPKNTLQE----LYLQNNGF--TGKIPPTLSNCSELVSLHL 422
Query: 236 DGNRIEEITDGFFQSLSTLRVLS-----LRGNFP-------------------PSTLPSG 271
N + SLS LR L L G P +PSG
Sbjct: 423 SFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG 482
Query: 272 ISGLVSLHHLDLSSTDITG-LPQELKALEKLRYLNLDYAFHLSIIPHQLISCFS 324
+S +L+ + LS+ +TG +P+ + LE L L L IP +L C S
Sbjct: 483 LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRS 536
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 65/174 (37%), Gaps = 35/174 (20%)
Query: 180 TVDKEEQNFLVRAGVKLTEAPKVEEWEGAKRISLTANGIGSLSEIP----TCPRLVTLLL 235
T+D NF L + PK E + L NG +IP C LV+L L
Sbjct: 372 TLDLSSNNFSGPILPNLCQNPKNTLQE----LYLQNNGF--TGKIPPTLSNCSELVSLHL 425
Query: 236 DGNRIEEITDGFFQSLSTLRVLS-----LRGNFP-------------------PSTLPSG 271
N + SLS LR L L G P +PSG
Sbjct: 426 SFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG 485
Query: 272 ISGLVSLHHLDLSSTDITG-LPQELKALEKLRYLNLDYAFHLSIIPHQLISCFS 324
+S +L+ + LS+ +TG +P+ + LE L L L IP +L C S
Sbjct: 486 LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRS 539
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 30.8 bits (68), Expect = 1.7, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 233 LLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGI-SGLVSLHHLDLSSTDITGL 291
L L+ N+I ++ G F L L+ L N + +P+G+ L L LDL+ + +
Sbjct: 38 LWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDNHLKSI 96
Query: 292 PQELKALEKLRYLNLDYAFH 311
P+ A + L+ L Y ++
Sbjct: 97 PR--GAFDNLKSLTHIYLYN 114
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 44/94 (46%), Gaps = 13/94 (13%)
Query: 216 NGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPS-GISG 274
NG+ SL+ TL L N + I G F+ LS LR L LR N P ++PS +
Sbjct: 120 NGLASLN---------TLELFDNWLTVIPSGAFEYLSKLRELWLRNN-PIESIPSYAFNR 169
Query: 275 LVSLHHLDLSSTDITGLPQE--LKALEKLRYLNL 306
+ SL LDL E + L L+YLNL
Sbjct: 170 VPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNL 203
>pdb|3V48|A Chain A, Crystal Structure Of The Putative AlphaBETA HYDROLASE RUTD
FROM E.Coli
pdb|3V48|B Chain B, Crystal Structure Of The Putative AlphaBETA HYDROLASE RUTD
FROM E.Coli
Length = 268
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 361 GLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSV--WVECGTYTRPPFNV 408
G++H V+ + G+ + Q L YP V++ SV W+ +TR F V
Sbjct: 80 GIEHYAVVGHALGALVGXQLALDYPASVTVLISVNGWLRINAHTRRCFQV 129
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Query: 229 RLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDI 288
+L L L GN+++ + G F L+ L+ L L N S L +L L LS+ +
Sbjct: 108 QLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167
Query: 289 TGLPQ-ELKALEKLRYLNL 306
+P L KL+ + L
Sbjct: 168 QSVPHGAFDRLGKLQTITL 186
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 226 TCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSS 285
T P L L + NR+ + G + L L+ L L+GN + P ++ L L L++
Sbjct: 98 TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN 157
Query: 286 TDITGLPQE-LKALEKLRYL 304
++T LP L LE L L
Sbjct: 158 NNLTELPAGLLNGLENLDTL 177
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 226 TCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSS 285
T P L L + NR+ + G + L L+ L L+GN + P ++ L L L++
Sbjct: 98 TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN 157
Query: 286 TDITGLPQE-LKALEKLRYL 304
++T LP L LE L L
Sbjct: 158 NNLTELPAGLLNGLENLDTL 177
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 226 TCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSS 285
T P L L + NR+ + G + L L+ L L+GN + P ++ L L L++
Sbjct: 98 TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN 157
Query: 286 TDITGLPQE-LKALEKLRYL 304
++T LP L LE L L
Sbjct: 158 NNLTELPAGLLNGLENLDTL 177
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Query: 229 RLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDI 288
+L L L GN+++ + G F L+ L+ L L N S L +L L LS+ +
Sbjct: 108 QLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167
Query: 289 TGLPQ-ELKALEKLRYLNL 306
+P L KL+ + L
Sbjct: 168 QSVPHGAFDRLGKLQTITL 186
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 10 SLAHDKAWELFQEMVERSTLDSHTSIPELAETLARECGGLPLALKIVGRAMK 61
SL +K E+ V D +PE A ++ +EC G PL + ++G ++
Sbjct: 291 SLGKEKGLEILSLFVNMKKAD----LPEQAHSIIKECKGSPLVVSLIGALLR 338
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 10 SLAHDKAWELFQEMVERSTLDSHTSIPELAETLARECGGLPLALKIVGRAMKS 62
SL +K E+ V D +PE A ++ +EC G PL + ++G ++
Sbjct: 285 SLGKEKGLEILSLFVNMKKAD----LPEQAHSIIKECKGSPLVVSLIGALLRD 333
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 64/151 (42%), Gaps = 13/151 (8%)
Query: 198 EAPKVEEWEGAKRIS---LTANGI-----GSLSEIPTCPRLVTLLLDGNRIEEITDGFFQ 249
E + + W G +S LT N I GS S + + LV + +E G
Sbjct: 64 ETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIG--- 120
Query: 250 SLSTLRVLSLRGNFPPST-LPSGISGLVSLHHLDLSSTDITGLP-QELKALEKLRYLNLD 307
L TL+ L++ NF S LP+ S L +L H+DLS I + +L+ L + +NL
Sbjct: 121 QLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLS 180
Query: 308 YAFHLSIIPHQLISCFSKLEVLRLCGCGRFG 338
L+ I F +++ L G F
Sbjct: 181 LDMSLNPIDFIQDQAFQGIKLHELTLRGNFN 211
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 245 DGFFQSLSTLRVLSLRGN-FPPSTLPSGISGLVSLHHLDLSSTDITGLP-QELKALEKLR 302
DG F L++L L + GN F +TL + + +L LDLS + + L +L+
Sbjct: 436 DGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQ 495
Query: 303 YLNLDY 308
LN+ +
Sbjct: 496 LLNMSH 501
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 226 TCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSS 285
T P L L + NR+ + G + L L+ L L+GN + P ++ L L L++
Sbjct: 98 TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN 157
Query: 286 TDITGLPQE-LKALEKLRYL 304
++T LP L LE L L
Sbjct: 158 NNLTELPAGLLNGLENLDTL 177
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 226 TCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSS 285
T P L L + NR+ + G + L L+ L L+GN + P ++ L L L++
Sbjct: 99 TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN 158
Query: 286 TDITGLPQE-LKALEKLRYL 304
++T LP L LE L L
Sbjct: 159 NNLTELPAGLLNGLENLDTL 178
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 64/151 (42%), Gaps = 13/151 (8%)
Query: 198 EAPKVEEWEGAKRIS---LTANGI-----GSLSEIPTCPRLVTLLLDGNRIEEITDGFFQ 249
E + + W G +S LT N I GS S + + LV + +E G
Sbjct: 69 ETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIG--- 125
Query: 250 SLSTLRVLSLRGNFPPST-LPSGISGLVSLHHLDLSSTDITGLP-QELKALEKLRYLNLD 307
L TL+ L++ NF S LP+ S L +L H+DLS I + +L+ L + +NL
Sbjct: 126 QLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLS 185
Query: 308 YAFHLSIIPHQLISCFSKLEVLRLCGCGRFG 338
L+ I F +++ L G F
Sbjct: 186 LDMSLNPIDFIQDQAFQGIKLHELTLRGNFN 216
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 245 DGFFQSLSTLRVLSLRGN-FPPSTLPSGISGLVSLHHLDLSSTDITGLP-QELKALEKLR 302
DG F L++L L + GN F +TL + + +L LDLS + + L +L+
Sbjct: 441 DGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQ 500
Query: 303 YLNLDY 308
LN+ +
Sbjct: 501 LLNMSH 506
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 30.0 bits (66), Expect = 3.5, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 38/88 (43%), Gaps = 9/88 (10%)
Query: 229 RLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHL------- 281
+L L LD N++ + G F L+ L LSL N S L SL H+
Sbjct: 63 QLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPW 122
Query: 282 DLSSTDITGLPQELKALEKL--RYLNLD 307
D + +DI L + + L YLNLD
Sbjct: 123 DCACSDILYLSRWISQHPGLVFGYLNLD 150
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 16/108 (14%)
Query: 267 TLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYL--------NLDYAFHLSIIPHQ 318
T+ + L+ + HLDLS + LP L AL L L N+D +L + +
Sbjct: 454 TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRL-QE 512
Query: 319 LISCFSKLE----VLRLCGCGRFGVIKGKEGNVLC--DGAEPLMKELL 360
L+ C ++L+ + L C R V+ +GN LC +G + + E+L
Sbjct: 513 LLLCNNRLQQSAAIQPLVSCPRL-VLLNLQGNSLCQEEGIQERLAEML 559
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 16/108 (14%)
Query: 267 TLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYL--------NLDYAFHLSIIPHQ 318
T+ + L+ + HLDLS + LP L AL L L N+D +L + +
Sbjct: 454 TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRL-QE 512
Query: 319 LISCFSKLE----VLRLCGCGRFGVIKGKEGNVLC--DGAEPLMKELL 360
L+ C ++L+ + L C R V+ +GN LC +G + + E+L
Sbjct: 513 LLLCNNRLQQSAAIQPLVSCPRL-VLLNLQGNSLCQEEGIQERLAEML 559
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 30.0 bits (66), Expect = 3.6, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 38/88 (43%), Gaps = 9/88 (10%)
Query: 229 RLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHL------- 281
+L L LD N++ + G F L+ L LSL N S L SL H+
Sbjct: 55 QLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPW 114
Query: 282 DLSSTDITGLPQELKALEKL--RYLNLD 307
D + +DI L + + L YLNLD
Sbjct: 115 DCACSDILYLSRWISQHPGLVFGYLNLD 142
>pdb|2P1M|B Chain B, Tir1-ask1 Complex Structure
pdb|2P1N|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1N|E Chain E, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1O|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1P|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1Q|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|3C6N|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
pdb|3C6O|B Chain B, Small Molecule Agonists And Antagonists Of F-Box
Protein-Substrate Interactions In Auxin Perception And
Signaling
pdb|3C6P|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
Length = 594
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 18/88 (20%)
Query: 422 LESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRGKDLTWLVFV----QNLKQLNMQ 477
LE L+ M + T++ +L F+N +VL SC G L + +NLK+L+++
Sbjct: 107 LEEIRLKRMVV--TDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLR 164
Query: 478 GFTMEEIISVEKLSDISEVIGSEHNFFP 505
SD+ +V G + FP
Sbjct: 165 E------------SDVDDVSGHWLSHFP 180
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 2/96 (2%)
Query: 211 ISLTANGIGSLSEI-PTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLP 269
+ L+ N + SL + T P L L + NR+ + G + L L+ L L+GN + P
Sbjct: 82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP 141
Query: 270 SGISGLVSLHHLDLSSTDITGLPQE-LKALEKLRYL 304
++ L L L++ +T LP L LE L L
Sbjct: 142 GLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTL 177
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 2/96 (2%)
Query: 211 ISLTANGIGSLSEI-PTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLP 269
+ L+ N + SL + T P L L + NR+ + G + L L+ L L+GN + P
Sbjct: 82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP 141
Query: 270 SGISGLVSLHHLDLSSTDITGLPQE-LKALEKLRYL 304
++ L L L++ +T LP L LE L L
Sbjct: 142 GLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTL 177
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 224 IPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGI-SGLVSLHHLD 282
IPT ++ L L N+I ++ G F SL L+ L L G+ LP G+ L L LD
Sbjct: 38 IPTNAQI--LYLHDNQITKLEPGVFDSLINLKELYL-GSNQLGALPVGVFDSLTQLTVLD 94
Query: 283 LSSTDITGLPQEL 295
L + +T LP +
Sbjct: 95 LGTNQLTVLPSAV 107
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 2/96 (2%)
Query: 211 ISLTANGIGSLSEI-PTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLP 269
+ L+ N + SL + T P L L + NR+ + G + L L+ L L+GN + P
Sbjct: 82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP 141
Query: 270 SGISGLVSLHHLDLSSTDITGLPQE-LKALEKLRYL 304
++ L L L++ +T LP L LE L L
Sbjct: 142 GLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTL 177
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 2/96 (2%)
Query: 211 ISLTANGIGSLSEI-PTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLP 269
+ L+ N + SL + T P L L + NR+ + G + L L+ L L+GN + P
Sbjct: 82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP 141
Query: 270 SGISGLVSLHHLDLSSTDITGLPQE-LKALEKLRYL 304
++ L L L++ +T LP L LE L L
Sbjct: 142 GLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTL 177
>pdb|3SB4|A Chain A, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Bt_1240) From Bacteroides Thetaiotaomicron
Vpi-5482 At 1.99 A Resolution
pdb|3SB4|B Chain B, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Bt_1240) From Bacteroides Thetaiotaomicron
Vpi-5482 At 1.99 A Resolution
Length = 329
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 239 RIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTD 287
+I+ I D F+ L++ +R P+ LP ++ V+ + L S+D
Sbjct: 111 KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSD 159
>pdb|3VBB|A Chain A, Crystal Structure Of Seryl-Trna Synthetase From Human At
2.9 Angstroms
pdb|3VBB|B Chain B, Crystal Structure Of Seryl-Trna Synthetase From Human At
2.9 Angstroms
pdb|3VBB|C Chain C, Crystal Structure Of Seryl-Trna Synthetase From Human At
2.9 Angstroms
pdb|3VBB|D Chain D, Crystal Structure Of Seryl-Trna Synthetase From Human At
2.9 Angstroms
pdb|3VBB|E Chain E, Crystal Structure Of Seryl-Trna Synthetase From Human At
2.9 Angstroms
pdb|3VBB|F Chain F, Crystal Structure Of Seryl-Trna Synthetase From Human At
2.9 Angstroms
Length = 522
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 19/24 (79%), Gaps = 3/24 (12%)
Query: 4 EKLE--VYSLAHD-KAWELFQEMV 24
EK+E VYS HD K+WE+F+EM+
Sbjct: 322 EKIEQFVYSSPHDNKSWEMFEEMI 345
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,075,062
Number of Sequences: 62578
Number of extensions: 644800
Number of successful extensions: 1723
Number of sequences better than 100.0: 102
Number of HSP's better than 100.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 1493
Number of HSP's gapped (non-prelim): 241
length of query: 542
length of database: 14,973,337
effective HSP length: 104
effective length of query: 438
effective length of database: 8,465,225
effective search space: 3707768550
effective search space used: 3707768550
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)