Query 037847
Match_columns 542
No_of_seqs 305 out of 3329
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 04:57:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037847.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037847hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.2E-64 2.5E-69 540.4 26.2 515 3-541 309-841 (889)
2 PLN03210 Resistant to P. syrin 100.0 3.7E-49 8E-54 443.9 34.2 494 2-542 342-906 (1153)
3 PLN00113 leucine-rich repeat r 99.9 1.7E-22 3.7E-27 228.1 16.8 137 204-341 116-253 (968)
4 PLN00113 leucine-rich repeat r 99.9 6.7E-22 1.4E-26 223.3 17.8 320 203-540 137-486 (968)
5 PF00931 NB-ARC: NB-ARC domain 99.9 3.5E-22 7.5E-27 193.5 6.2 136 3-139 149-284 (287)
6 KOG0444 Cytoskeletal regulator 99.9 2.4E-23 5.3E-28 203.7 -2.4 319 187-542 35-375 (1255)
7 KOG4194 Membrane glycoprotein 99.8 7.3E-21 1.6E-25 185.2 4.5 307 202-538 98-425 (873)
8 KOG4194 Membrane glycoprotein 99.8 3.2E-20 7E-25 180.7 3.7 320 190-537 108-447 (873)
9 PLN03210 Resistant to P. syrin 99.8 3.5E-18 7.6E-23 193.6 20.3 320 186-542 591-943 (1153)
10 KOG0444 Cytoskeletal regulator 99.8 3.1E-20 6.7E-25 182.1 -1.3 286 204-523 76-380 (1255)
11 KOG0472 Leucine-rich repeat pr 99.8 3.5E-20 7.7E-25 172.9 -3.3 312 201-540 201-539 (565)
12 KOG0472 Leucine-rich repeat pr 99.6 1.6E-18 3.5E-23 161.9 -8.3 247 202-484 64-312 (565)
13 PRK15387 E3 ubiquitin-protein 99.6 1.1E-14 2.4E-19 154.0 15.3 252 188-516 205-456 (788)
14 KOG0617 Ras suppressor protein 99.5 2.7E-16 5.9E-21 130.4 -3.8 159 196-374 23-184 (264)
15 PRK15370 E3 ubiquitin-protein 99.5 5.9E-14 1.3E-18 149.4 12.3 246 208-516 180-426 (754)
16 KOG0618 Serine/threonine phosp 99.5 8.8E-16 1.9E-20 157.9 -2.9 258 207-517 220-488 (1081)
17 PRK15370 E3 ubiquitin-protein 99.5 2E-13 4.4E-18 145.3 11.5 242 228-538 178-424 (754)
18 PRK15387 E3 ubiquitin-protein 99.4 6.2E-13 1.3E-17 140.8 13.2 234 188-484 226-460 (788)
19 KOG0618 Serine/threonine phosp 99.4 2.6E-14 5.6E-19 147.2 2.1 107 208-316 47-154 (1081)
20 KOG4658 Apoptotic ATPase [Sign 99.4 1.5E-13 3.2E-18 148.6 7.0 314 187-539 526-856 (889)
21 KOG4237 Extracellular matrix p 99.4 1E-14 2.2E-19 136.6 -2.1 295 188-513 50-354 (498)
22 KOG0617 Ras suppressor protein 99.4 3E-15 6.5E-20 124.2 -5.2 167 218-432 23-190 (264)
23 cd00116 LRR_RI Leucine-rich re 99.3 7.8E-13 1.7E-17 130.2 1.9 69 413-484 219-293 (319)
24 cd00116 LRR_RI Leucine-rich re 99.3 1.1E-12 2.4E-17 129.1 1.8 265 225-538 20-316 (319)
25 KOG4237 Extracellular matrix p 99.2 3.3E-13 7.1E-18 126.6 -3.5 285 214-538 54-355 (498)
26 PF14580 LRR_9: Leucine-rich r 99.2 4.7E-11 1E-15 103.9 6.6 141 215-372 6-149 (175)
27 KOG3207 Beta-tubulin folding c 99.0 1.3E-10 2.8E-15 110.9 0.9 205 249-514 118-335 (505)
28 KOG1259 Nischarin, modulator o 99.0 2.1E-10 4.6E-15 104.1 1.8 88 410-517 324-411 (490)
29 PF14580 LRR_9: Leucine-rich r 98.9 6E-10 1.3E-14 97.0 4.1 131 200-333 13-149 (175)
30 KOG0532 Leucine-rich repeat (L 98.8 2.7E-10 5.8E-15 112.1 -4.3 123 209-336 78-201 (722)
31 COG4886 Leucine-rich repeat (L 98.7 8.8E-09 1.9E-13 104.5 5.4 106 225-334 113-219 (394)
32 KOG3207 Beta-tubulin folding c 98.7 3.6E-09 7.8E-14 101.2 1.7 133 204-337 119-259 (505)
33 KOG2120 SCF ubiquitin ligase, 98.7 6.7E-10 1.4E-14 100.9 -3.7 110 412-539 257-373 (419)
34 KOG1259 Nischarin, modulator o 98.7 8.7E-09 1.9E-13 93.8 1.8 125 205-336 213-341 (490)
35 PLN03150 hypothetical protein; 98.6 2E-07 4.3E-12 99.3 9.8 108 229-337 419-528 (623)
36 COG4886 Leucine-rich repeat (L 98.6 6.7E-08 1.4E-12 98.1 5.6 131 202-336 112-244 (394)
37 KOG4341 F-box protein containi 98.5 5.9E-09 1.3E-13 99.2 -2.9 286 228-541 138-438 (483)
38 KOG1909 Ran GTPase-activating 98.5 1.6E-08 3.6E-13 94.2 -0.9 139 224-374 26-196 (382)
39 KOG0532 Leucine-rich repeat (L 98.5 1.7E-08 3.6E-13 99.8 -1.0 131 202-337 117-247 (722)
40 KOG4341 F-box protein containi 98.5 5.3E-09 1.1E-13 99.6 -5.1 294 206-535 138-458 (483)
41 PF13855 LRR_8: Leucine rich r 98.4 1.9E-07 4.1E-12 66.6 3.5 58 277-335 2-60 (61)
42 PF13855 LRR_8: Leucine rich r 98.4 2.3E-07 5E-12 66.2 3.7 58 229-287 2-60 (61)
43 KOG2120 SCF ubiquitin ligase, 98.4 1.2E-08 2.6E-13 92.9 -3.8 181 277-478 186-372 (419)
44 PLN03150 hypothetical protein; 98.3 1.6E-06 3.4E-11 92.5 7.8 89 253-342 419-508 (623)
45 KOG2982 Uncharacterized conser 98.2 1.9E-07 4.2E-12 85.2 -0.9 79 446-535 198-285 (418)
46 KOG0531 Protein phosphatase 1, 98.2 1.7E-07 3.6E-12 95.4 -2.1 197 226-485 70-271 (414)
47 KOG0531 Protein phosphatase 1, 98.2 2.8E-07 6E-12 93.8 -1.0 128 204-337 70-199 (414)
48 KOG1859 Leucine-rich repeat pr 98.1 8.3E-08 1.8E-12 97.5 -5.9 154 200-374 103-265 (1096)
49 PF12799 LRR_4: Leucine Rich r 98.1 5.9E-06 1.3E-10 54.0 4.5 40 277-317 2-41 (44)
50 KOG1909 Ran GTPase-activating 98.0 7E-07 1.5E-11 83.5 -1.1 249 248-516 26-309 (382)
51 PF12799 LRR_4: Leucine Rich r 98.0 1.1E-05 2.4E-10 52.7 4.0 40 252-292 1-40 (44)
52 PRK15386 type III secretion pr 97.9 2.9E-05 6.3E-10 76.3 8.4 64 248-317 48-112 (426)
53 KOG1859 Leucine-rich repeat pr 97.8 3.7E-07 8E-12 93.0 -7.1 128 203-336 161-291 (1096)
54 KOG4579 Leucine-rich repeat (L 97.8 2E-06 4.4E-11 69.6 -1.6 93 224-318 49-141 (177)
55 PRK15386 type III secretion pr 97.6 0.00028 6E-09 69.6 8.6 118 202-334 48-187 (426)
56 KOG2982 Uncharacterized conser 97.6 4.3E-05 9.4E-10 70.2 2.6 81 226-309 69-156 (418)
57 KOG3665 ZYG-1-like serine/thre 97.5 7.4E-05 1.6E-09 79.8 3.9 130 206-337 122-263 (699)
58 KOG1644 U2-associated snRNP A' 97.5 0.00019 4.1E-09 62.5 5.3 100 207-307 43-148 (233)
59 KOG4579 Leucine-rich repeat (L 97.3 3.1E-05 6.8E-10 62.8 -1.3 105 230-337 29-136 (177)
60 KOG3665 ZYG-1-like serine/thre 97.3 0.00024 5.2E-09 75.9 4.6 126 205-333 147-284 (699)
61 COG5238 RNA1 Ran GTPase-activa 97.3 6E-05 1.3E-09 68.4 -0.2 244 227-484 29-318 (388)
62 KOG2123 Uncharacterized conser 97.2 1.6E-05 3.5E-10 72.2 -4.2 101 414-535 18-123 (388)
63 KOG1644 U2-associated snRNP A' 97.1 0.0007 1.5E-08 59.0 4.6 106 252-374 42-151 (233)
64 KOG1947 Leucine rich repeat pr 96.7 0.00026 5.5E-09 74.0 -1.1 111 226-336 186-307 (482)
65 KOG2739 Leucine-rich acidic nu 96.7 0.00091 2E-08 60.8 2.5 81 227-309 42-126 (260)
66 COG5238 RNA1 Ran GTPase-activa 96.6 0.00065 1.4E-08 61.9 0.9 89 248-336 26-132 (388)
67 KOG2739 Leucine-rich acidic nu 96.6 0.0011 2.5E-08 60.2 1.8 102 206-309 43-153 (260)
68 KOG2123 Uncharacterized conser 96.2 0.00039 8.5E-09 63.5 -3.2 76 230-309 21-98 (388)
69 KOG1947 Leucine rich repeat pr 95.8 0.0012 2.6E-08 68.9 -2.1 242 248-541 184-439 (482)
70 PF00560 LRR_1: Leucine Rich R 95.8 0.0028 6.1E-08 34.3 0.3 16 278-293 2-17 (22)
71 PRK04841 transcriptional regul 94.9 0.35 7.6E-06 54.9 13.6 148 5-178 176-332 (903)
72 PF13306 LRR_5: Leucine rich r 94.8 0.094 2E-06 43.4 6.6 102 224-332 8-111 (129)
73 PF00560 LRR_1: Leucine Rich R 94.4 0.016 3.6E-07 31.3 0.7 21 253-274 1-21 (22)
74 KOG3864 Uncharacterized conser 94.4 0.0045 9.8E-08 54.1 -2.4 62 446-519 124-190 (221)
75 PF13504 LRR_7: Leucine rich r 94.2 0.034 7.5E-07 27.8 1.5 15 277-291 2-16 (17)
76 PF13306 LRR_5: Leucine rich r 94.1 0.2 4.3E-06 41.4 7.1 115 204-326 10-128 (129)
77 KOG0473 Leucine-rich repeat pr 90.7 0.0071 1.5E-07 54.0 -6.2 86 223-310 37-122 (326)
78 PRK00080 ruvB Holliday junctio 90.7 0.58 1.3E-05 46.0 6.3 135 4-158 173-309 (328)
79 smart00369 LRR_TYP Leucine-ric 90.6 0.28 6E-06 27.6 2.4 19 276-294 2-20 (26)
80 smart00370 LRR Leucine-rich re 90.6 0.28 6E-06 27.6 2.4 19 276-294 2-20 (26)
81 KOG3864 Uncharacterized conser 89.7 0.03 6.6E-07 49.1 -3.1 62 410-478 120-185 (221)
82 KOG0473 Leucine-rich repeat pr 88.3 0.012 2.7E-07 52.5 -6.5 95 241-338 31-125 (326)
83 smart00369 LRR_TYP Leucine-ric 87.0 0.61 1.3E-05 26.1 2.1 22 298-320 1-22 (26)
84 smart00370 LRR Leucine-rich re 87.0 0.61 1.3E-05 26.1 2.1 22 298-320 1-22 (26)
85 smart00367 LRR_CC Leucine-rich 86.1 0.49 1.1E-05 26.6 1.4 15 528-542 1-15 (26)
86 TIGR03015 pepcterm_ATPase puta 85.0 4.2 9E-05 38.6 8.2 57 4-60 185-242 (269)
87 TIGR00635 ruvB Holliday juncti 84.0 29 0.00064 33.5 13.8 135 4-158 152-288 (305)
88 smart00364 LRR_BAC Leucine-ric 75.0 1.9 4.1E-05 24.2 1.2 17 277-293 3-19 (26)
89 smart00365 LRR_SD22 Leucine-ri 62.2 6.8 0.00015 22.1 1.7 14 276-289 2-15 (26)
90 PF13516 LRR_6: Leucine Rich r 55.7 4.8 0.0001 21.9 0.4 14 228-241 2-15 (24)
91 KOG4308 LRR-containing protein 55.3 0.33 7.1E-06 50.0 -7.8 38 447-484 262-305 (478)
92 PRK06893 DNA replication initi 52.1 47 0.001 30.6 6.6 55 3-60 153-207 (229)
93 COG2909 MalT ATP-dependent tra 49.9 1.7E+02 0.0036 32.5 10.8 140 10-176 193-336 (894)
94 KOG3763 mRNA export factor TAP 49.4 8.2 0.00018 39.7 1.2 89 413-512 216-308 (585)
95 KOG4308 LRR-containing protein 49.0 0.74 1.6E-05 47.5 -6.4 158 206-375 115-302 (478)
96 smart00368 LRR_RI Leucine rich 46.5 17 0.00037 20.7 1.7 13 277-289 3-15 (28)
97 PF14164 YqzH: YqzH-like prote 43.9 41 0.00089 23.7 3.5 37 7-43 22-58 (64)
98 COG3899 Predicted ATPase [Gene 40.0 2.6E+02 0.0057 31.6 11.1 139 3-157 211-355 (849)
99 cd00923 Cyt_c_Oxidase_Va Cytoc 39.4 1.8E+02 0.0038 22.7 6.6 66 15-80 22-90 (103)
100 PF02284 COX5A: Cytochrome c o 38.3 1.4E+02 0.003 23.6 5.9 67 13-79 23-92 (108)
101 PRK09087 hypothetical protein; 33.7 2.7E+02 0.0059 25.5 8.5 69 3-74 145-220 (226)
102 PF14516 AAA_35: AAA-like doma 32.5 4.9E+02 0.011 25.5 12.7 55 2-63 192-246 (331)
103 PF03861 ANTAR: ANTAR domain; 32.3 67 0.0015 21.9 3.3 31 9-43 26-56 (56)
104 KOG2035 Replication factor C, 28.2 2.4E+02 0.0052 26.9 6.9 93 6-102 181-283 (351)
105 PRK13342 recombination factor 25.8 5.7E+02 0.012 25.9 10.2 57 4-60 144-200 (413)
106 PRK00411 cdc6 cell division co 23.6 6.7E+02 0.015 25.0 10.3 94 4-113 200-304 (394)
107 KOG4062 6-O-methylguanine-DNA 22.0 1.3E+02 0.0028 25.7 3.6 17 47-63 116-132 (178)
108 PF05725 FNIP: FNIP Repeat; I 20.9 1.1E+02 0.0025 19.4 2.6 10 415-424 12-21 (44)
109 KOG4077 Cytochrome c oxidase, 20.5 5E+02 0.011 21.5 6.7 67 13-79 62-131 (149)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-64 Score=540.36 Aligned_cols=515 Identities=41% Similarity=0.666 Sum_probs=415.1
Q ss_pred CCeeecCCCChhhHHHHHHHHhccccCCCCCCHHHHHHHHHHHhCCChhHHHHHHHHHhcCCChhHHHHHHHHHhcc-cC
Q 037847 3 AEKLEVYSLAHDKAWELFQEMVERSTLDSHTSIPELAETLARECGGLPLALKIVGRAMKSQRKVGDWKRAINKMRTS-AS 81 (542)
Q Consensus 3 ~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~kc~GlPlai~~ig~~L~~~~~~~~W~~~~~~l~~~-~~ 81 (542)
...+++++|.++|||+||++.||......++.+.++|++||++|+|+|||++++|+.|+.|.+.++|+++.+.+.+. ..
T Consensus 309 ~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~ 388 (889)
T KOG4658|consen 309 DYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAA 388 (889)
T ss_pred CccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccC
Confidence 46799999999999999999999886667777999999999999999999999999999999999999999999887 45
Q ss_pred CCCCChHHHHHHHHhhcCCCCchhhhHHHhhhccCCCCcccChHHHHHHHHHcCCcccc-------chhchHHHHHHHhc
Q 037847 82 KFSGMKEEVFSRLKFSYDSLSTDELRSCLLYCYLYPEDYEIPKRELIDYWISEGFVYDF-------DDGCDFIDDLLQAC 154 (542)
Q Consensus 82 ~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~~~~~~Li~~w~a~g~i~~~-------~~~~~~~~~L~~~~ 154 (542)
..+++.+.++++|++|||.||+ ++|.||+|||+||+||.|++++||.+||||||+.+. ++|+.|+++|+.++
T Consensus 389 ~~~~~~~~i~~iLklSyd~L~~-~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~ 467 (889)
T KOG4658|consen 389 DFSGMEESILPILKLSYDNLPE-ELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRAS 467 (889)
T ss_pred CCCchhhhhHHhhhccHhhhhH-HHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHH
Confidence 5567788999999999999996 999999999999999999999999999999999773 89999999999999
Q ss_pred ccccc----CCCeEEeehHHHHHHHHHHcccCcccceEEEecCcccccCCcccccccceEEEeecCCcCCCCCCCCCCCc
Q 037847 155 LLEEE----GDDHVKMHDMIREMSLWIACTVDKEEQNFLVRAGVKLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRL 230 (542)
Q Consensus 155 l~~~~----~~~~~~mhdl~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L 230 (542)
++..+ ....|+|||+++++|.+++.+....+++.++..+......|....+..+|++++.++.+..++.-..+++|
T Consensus 468 Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L 547 (889)
T KOG4658|consen 468 LLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKL 547 (889)
T ss_pred HHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCcc
Confidence 99985 45899999999999999999877777777777776777789999999999999999999999888888899
Q ss_pred cEEEccCcc--cccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccCCCCCcccHHhhcCCCCCEEeccC
Q 037847 231 VTLLLDGNR--IEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDY 308 (542)
Q Consensus 231 ~~L~l~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~ 308 (542)
++|.+.+|. +..++..+|..++.|++||+++|.....+|++|+.|.+||||+++++.++.+|.++++|++|.+|++..
T Consensus 548 ~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~ 627 (889)
T KOG4658|consen 548 RTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEV 627 (889)
T ss_pred ceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheecccc
Confidence 999999996 777888889999999999999998999999999999999999999999999999999999999999999
Q ss_pred CcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCCceeeeEecchHHHHHhhcCchhh
Q 037847 309 AFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLV 388 (542)
Q Consensus 309 ~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~ 388 (542)
+..+..+|. +...|++||+|.+..... ......+.++..|++|+.+++........+.+..+..+.
T Consensus 628 ~~~l~~~~~-i~~~L~~Lr~L~l~~s~~-------------~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~ 693 (889)
T KOG4658|consen 628 TGRLESIPG-ILLELQSLRVLRLPRSAL-------------SNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLR 693 (889)
T ss_pred ccccccccc-hhhhcccccEEEeecccc-------------ccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHH
Confidence 977777755 366799999999976542 335567888899999999999776665556677777777
Q ss_pred ccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccchhhcccccc-cccccCEEEEccCCC-CCcchhh
Q 037847 389 SITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRN-GFRNLNTVVLRSCRG-KDLTWLV 466 (542)
Q Consensus 389 ~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~c~~-~~~~~l~ 466 (542)
...+.+.+.++ ......+.+..+.+|+.|.|.+|.+.+....+... .... .|+++.++.+.+|.. ..+.|..
T Consensus 694 ~~~~~l~~~~~---~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~---~~~~~~f~~l~~~~~~~~~~~r~l~~~~ 767 (889)
T KOG4658|consen 694 SLLQSLSIEGC---SKRTLISSLGSLGNLEELSILDCGISEIVIEWEES---LIVLLCFPNLSKVSILNCHMLRDLTWLL 767 (889)
T ss_pred HHhHhhhhccc---ccceeecccccccCcceEEEEcCCCchhhcccccc---cchhhhHHHHHHHHhhccccccccchhh
Confidence 77776665432 23445567788999999999999998754433221 1111 256777777777777 7777777
Q ss_pred hccCcceEEEec-cchhhhcccccccccccccCCcCCCCCcccee-ecccCCcccccCCCCCCCCCcceEeeccCCC
Q 037847 467 FVQNLKQLNMQG-FTMEEIISVEKLSDISEVIGSEHNFFPRLEYL-TMWRGTNLKSVYPNPQPFPKLKKIQAFHCRQ 541 (542)
Q Consensus 467 ~l~~L~~L~L~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L-~l~~c~~l~~~~~~~~~~p~L~~L~i~~C~~ 541 (542)
..|+|+.|.+.. ..+++++..+....... .....|.++..+ .+.+.+.+.++.+.+..+++|+.+.+..||+
T Consensus 768 f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~---~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~ 841 (889)
T KOG4658|consen 768 FAPHLTSLSLVSCRLLEDIIPKLKALLELK---ELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPK 841 (889)
T ss_pred ccCcccEEEEecccccccCCCHHHHhhhcc---cEEecccccccceeeecCCCCceeEecccCccchhheehhcCcc
Confidence 777888888877 55555443332211100 012345555555 3555555555544444445555555555554
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=3.7e-49 Score=443.95 Aligned_cols=494 Identities=22% Similarity=0.308 Sum_probs=360.0
Q ss_pred CCCeeecCCCChhhHHHHHHHHhccccCCCCCCHHHHHHHHHHHhCCChhHHHHHHHHHhcCCChhHHHHHHHHHhcccC
Q 037847 2 DAEKLEVYSLAHDKAWELFQEMVERSTLDSHTSIPELAETLARECGGLPLALKIVGRAMKSQRKVGDWKRAINKMRTSAS 81 (542)
Q Consensus 2 ~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~kc~GlPlai~~ig~~L~~~~~~~~W~~~~~~l~~~~~ 81 (542)
++++|+++.|++++||+||+++||+.. .+++++++++++||++|+|+|||++++|+.|++ ++.++|+.+++++++..
T Consensus 342 ~~~~~~v~~l~~~ea~~LF~~~Af~~~-~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~-k~~~~W~~~l~~L~~~~- 418 (1153)
T PLN03210 342 IDHIYEVCLPSNELALEMFCRSAFKKN-SPPDGFMELASEVALRAGNLPLGLNVLGSYLRG-RDKEDWMDMLPRLRNGL- 418 (1153)
T ss_pred CCeEEEecCCCHHHHHHHHHHHhcCCC-CCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcC-CCHHHHHHHHHHHHhCc-
Confidence 357899999999999999999999875 455679999999999999999999999999998 68899999999988754
Q ss_pred CCCCChHHHHHHHHhhcCCCCchhhhHHHhhhccCCCCcccChHHHHHHHHHcCCccccchhchHHHHHHHhccccccCC
Q 037847 82 KFSGMKEEVFSRLKFSYDSLSTDELRSCLLYCYLYPEDYEIPKRELIDYWISEGFVYDFDDGCDFIDDLLQACLLEEEGD 161 (542)
Q Consensus 82 ~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~~~~~~Li~~w~a~g~i~~~~~~~~~~~~L~~~~l~~~~~~ 161 (542)
+.+|+++|++||++|+++..|.||+++|+||.+..++. +..|+|.+.+.. +.| ++.|++++|++.. .
T Consensus 419 -----~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~---v~~~l~~~~~~~-~~~---l~~L~~ksLi~~~-~ 485 (1153)
T PLN03210 419 -----DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVND---IKLLLANSDLDV-NIG---LKNLVDKSLIHVR-E 485 (1153)
T ss_pred -----cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHH---HHHHHHhcCCCc-hhC---hHHHHhcCCEEEc-C
Confidence 33899999999999987458999999999999976543 778888775543 233 8999999999985 4
Q ss_pred CeEEeehHHHHHHHHHHcccC--cccceEEEecCcc----------------------ccc--C--Cccccc--------
Q 037847 162 DHVKMHDMIREMSLWIACTVD--KEEQNFLVRAGVK----------------------LTE--A--PKVEEW-------- 205 (542)
Q Consensus 162 ~~~~mhdl~~~~~~~i~~~~~--~~~~~~~~~~~~~----------------------~~~--~--~~~~~~-------- 205 (542)
..++|||++|++|+.+++.+. +.++.+++..... ... + ..+..+
T Consensus 486 ~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~ 565 (1153)
T PLN03210 486 DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKF 565 (1153)
T ss_pred CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEE
Confidence 679999999999999987653 3333344322100 000 0 001122
Q ss_pred -----------------------ccceEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCC
Q 037847 206 -----------------------EGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGN 262 (542)
Q Consensus 206 -----------------------~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 262 (542)
.+++.|.+.++.+..+|......+|+.|++.++.+..++.. +..+++|++|+++++
T Consensus 566 ~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~-~~~l~~Lk~L~Ls~~ 644 (1153)
T PLN03210 566 YTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDG-VHSLTGLRNIDLRGS 644 (1153)
T ss_pred ecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccc-cccCCCCCEEECCCC
Confidence 23555666666666666555677888888888888777665 678899999999988
Q ss_pred CCCCcCccccCCCCCCCEEeccCC-CCCcccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCcccccccc
Q 037847 263 FPPSTLPSGISGLVSLHHLDLSST-DITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIK 341 (542)
Q Consensus 263 ~~~~~lp~~i~~l~~L~~L~l~~~-~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~ 341 (542)
..+..+| .++.+++|++|++++| .+..+|..++++++|+.|++++|..+..+|.. + ++++|++|++++|...+.+|
T Consensus 645 ~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~L~Lsgc~~L~~~p 721 (1153)
T PLN03210 645 KNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSLYRLNLSGCSRLKSFP 721 (1153)
T ss_pred CCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCCCEEeCCCCCCccccc
Confidence 7778888 5888999999999987 67779999999999999999999888889875 3 78899999999998776666
Q ss_pred CCCCcc-----ccCCCcchhHhhccccCCceeeeEecchHHHH-Hhh----cCchhhccceeEEeccccCCCCCceeccc
Q 037847 342 GKEGNV-----LCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQ-KFL----KYPKLVSITQSVWVECGTYTRPPFNVLHL 411 (542)
Q Consensus 342 ~~~~~~-----~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~-~l~----~~~~~~~~l~~l~l~~~~~~~~~~~~~~l 411 (542)
....+. ........+. ...+++|..|.+......... .+. ........++.|++.++.. .......+
T Consensus 722 ~~~~nL~~L~L~~n~i~~lP~-~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~--l~~lP~si 798 (1153)
T PLN03210 722 DISTNISWLDLDETAIEEFPS-NLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPS--LVELPSSI 798 (1153)
T ss_pred cccCCcCeeecCCCccccccc-cccccccccccccccchhhccccccccchhhhhccccchheeCCCCCC--ccccChhh
Confidence 432211 0011011111 113445555554432110000 000 0011234567777766542 11122346
Q ss_pred ccccccceeeecccCccceeeccchhhcccccccccccCEEEEccCCC-CCcchhhhccCcceEEEeccchhhhcccccc
Q 037847 412 AYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRG-KDLTWLVFVQNLKQLNMQGFTMEEIISVEKL 490 (542)
Q Consensus 412 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~-~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~ 490 (542)
..+++|+.|++++|...+..+.. ..+++|+.|++++|.. ..++.+ .++|++|+|++|.+++++.
T Consensus 799 ~~L~~L~~L~Ls~C~~L~~LP~~---------~~L~sL~~L~Ls~c~~L~~~p~~--~~nL~~L~Ls~n~i~~iP~---- 863 (1153)
T PLN03210 799 QNLHKLEHLEIENCINLETLPTG---------INLESLESLDLSGCSRLRTFPDI--STNISDLNLSRTGIEEVPW---- 863 (1153)
T ss_pred hCCCCCCEEECCCCCCcCeeCCC---------CCccccCEEECCCCCcccccccc--ccccCEeECCCCCCccChH----
Confidence 77889999999988654422211 1378899999999877 544432 4789999999988887754
Q ss_pred cccccccCCcCCCCCccceeecccCCcccccCCCCCCCCCcceEeeccCCCC
Q 037847 491 SDISEVIGSEHNFFPRLEYLTMWRGTNLKSVYPNPQPFPKLKKIQAFHCRQL 542 (542)
Q Consensus 491 ~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~p~L~~L~i~~C~~L 542 (542)
....+++|+.|++.+|++++.++.....+++|+.+++++|++|
T Consensus 864 ---------si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L 906 (1153)
T PLN03210 864 ---------WIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGAL 906 (1153)
T ss_pred ---------HHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccc
Confidence 6778999999999999999999988888999999999999876
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.89 E-value=1.7e-22 Score=228.07 Aligned_cols=137 Identities=28% Similarity=0.391 Sum_probs=78.1
Q ss_pred ccccceEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEec
Q 037847 204 EWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDL 283 (542)
Q Consensus 204 ~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l 283 (542)
.+.++++|++.+|.+........+++|++|++++|.+....+..++.+++|++|++++|.....+|..++++.+|++|++
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 195 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTL 195 (968)
T ss_pred cCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeec
Confidence 44556666666665543222344556666666666554433434566666666666666444455666666666666666
Q ss_pred cCCCCCc-ccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCcccccccc
Q 037847 284 SSTDITG-LPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIK 341 (542)
Q Consensus 284 ~~~~i~~-lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~ 341 (542)
++|.+.. +|..++++++|++|++++|.....+|.. ++++++|++|++++|.+.+.+|
T Consensus 196 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p 253 (968)
T PLN00113 196 ASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYNNLTGPIP 253 (968)
T ss_pred cCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECcCceeccccC
Confidence 6665543 5666666666666666666444455554 5666666666666665544333
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.88 E-value=6.7e-22 Score=223.28 Aligned_cols=320 Identities=17% Similarity=0.165 Sum_probs=188.3
Q ss_pred cccccceEEEeecCCcCC-CC-CCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCE
Q 037847 203 EEWEGAKRISLTANGIGS-LS-EIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHH 280 (542)
Q Consensus 203 ~~~~~l~~l~l~~~~~~~-~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~ 280 (542)
..+.+++.|++.+|.+.. +| .+.++++|++|++++|.+....+..++++++|++|++++|.....+|..++.+.+|++
T Consensus 137 ~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 216 (968)
T PLN00113 137 GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKW 216 (968)
T ss_pred cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccE
Confidence 345778888888887763 34 4778888888888888776555555788888888888888666677888888888888
Q ss_pred EeccCCCCCc-ccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCcc--------c-cC
Q 037847 281 LDLSSTDITG-LPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNV--------L-CD 350 (542)
Q Consensus 281 L~l~~~~i~~-lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~--------~-~~ 350 (542)
|++++|.+.. +|..++++++|++|++++|.....+|.. ++++++|++|++++|.+.+.+|....+. . +.
T Consensus 217 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 295 (968)
T PLN00113 217 IYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNS 295 (968)
T ss_pred EECcCCccCCcCChhHhcCCCCCEEECcCceeccccChh-HhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCe
Confidence 8888887764 7888888888888888888655567765 7888888888888887766554322110 0 01
Q ss_pred CCcchhHhhccccCCceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCccce
Q 037847 351 GAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEM 430 (542)
Q Consensus 351 ~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 430 (542)
.....+..+.++++|+.|+++.+..... ........+.++.+.+.++... ......+..+++|+.|++++|.+...
T Consensus 296 l~~~~p~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~L~~n~l~--~~~p~~l~~~~~L~~L~Ls~n~l~~~ 371 (968)
T PLN00113 296 LSGEIPELVIQLQNLEILHLFSNNFTGK--IPVALTSLPRLQVLQLWSNKFS--GEIPKNLGKHNNLTVLDLSTNNLTGE 371 (968)
T ss_pred eccCCChhHcCCCCCcEEECCCCccCCc--CChhHhcCCCCCEEECcCCCCc--CcCChHHhCCCCCcEEECCCCeeEee
Confidence 1112233345556666666554432110 0011111234455555544321 11122345566677777777666542
Q ss_pred eeccchhhc--------------cc--ccccccccCEEEEccCCC--CCcchhhhccCcceEEEeccchhhhcccccccc
Q 037847 431 KIDSTEEVK--------------KL--FRNGFRNLNTVVLRSCRG--KDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSD 492 (542)
Q Consensus 431 ~~~~~~~~~--------------~~--~~~~l~~L~~L~L~~c~~--~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~ 492 (542)
.+..+.... .. ....+++|+.|++++|.+ ..+..+..+++|+.|++++|.+.....
T Consensus 372 ~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~------ 445 (968)
T PLN00113 372 IPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRIN------ 445 (968)
T ss_pred CChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccC------
Confidence 222211100 00 012244555555555555 333334555555555555555443321
Q ss_pred cccccCCcCCCCCccceeecccCCcccccCCCCCCCCCcceEeeccCC
Q 037847 493 ISEVIGSEHNFFPRLEYLTMWRGTNLKSVYPNPQPFPKLKKIQAFHCR 540 (542)
Q Consensus 493 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~p~L~~L~i~~C~ 540 (542)
.....+++|+.|++.+|.-...++.. ...++|+.|++++|.
T Consensus 446 ------~~~~~l~~L~~L~L~~n~~~~~~p~~-~~~~~L~~L~ls~n~ 486 (968)
T PLN00113 446 ------SRKWDMPSLQMLSLARNKFFGGLPDS-FGSKRLENLDLSRNQ 486 (968)
T ss_pred ------hhhccCCCCcEEECcCceeeeecCcc-cccccceEEECcCCc
Confidence 23345677777777776544444332 234777777777764
No 5
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.85 E-value=3.5e-22 Score=193.51 Aligned_cols=136 Identities=36% Similarity=0.743 Sum_probs=113.8
Q ss_pred CCeeecCCCChhhHHHHHHHHhccccCCCCCCHHHHHHHHHHHhCCChhHHHHHHHHHhcCCChhHHHHHHHHHhcccCC
Q 037847 3 AEKLEVYSLAHDKAWELFQEMVERSTLDSHTSIPELAETLARECGGLPLALKIVGRAMKSQRKVGDWKRAINKMRTSASK 82 (542)
Q Consensus 3 ~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~kc~GlPlai~~ig~~L~~~~~~~~W~~~~~~l~~~~~~ 82 (542)
..+|+|++|+++||++||++.++......++.+.+++++|+++|+|+||||+++|++|+.+.+.++|+.+++.+......
T Consensus 149 ~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~ 228 (287)
T PF00931_consen 149 DKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRE 228 (287)
T ss_dssp EEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTC
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 35799999999999999999998665334566788999999999999999999999997766889999999988887655
Q ss_pred CCCChHHHHHHHHhhcCCCCchhhhHHHhhhccCCCCcccChHHHHHHHHHcCCccc
Q 037847 83 FSGMKEEVFSRLKFSYDSLSTDELRSCLLYCYLYPEDYEIPKRELIDYWISEGFVYD 139 (542)
Q Consensus 83 ~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~~~~~~Li~~w~a~g~i~~ 139 (542)
..+....++.++.+||+.||+ ++|+||+|||+||+++.|+++.|+++|+++|++..
T Consensus 229 ~~~~~~~~~~~l~~s~~~L~~-~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 229 SRDYDRSVFSALELSYDSLPD-ELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp SSGSCHHHHHHHHHHHHSSHT-CCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred cccccccccccceechhcCCc-cHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 444556899999999999999 89999999999999999999999999999999875
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.85 E-value=2.4e-23 Score=203.65 Aligned_cols=319 Identities=19% Similarity=0.238 Sum_probs=215.4
Q ss_pred eEEEecCcccccCCc-ccccccceEEEeecCCcCCCC-CCCCCCCccEEEccCcccc--cccchhhccCCCccEEEecCC
Q 037847 187 NFLVRAGVKLTEAPK-VEEWEGAKRISLTANGIGSLS-EIPTCPRLVTLLLDGNRIE--EITDGFFQSLSTLRVLSLRGN 262 (542)
Q Consensus 187 ~~~~~~~~~~~~~~~-~~~~~~l~~l~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~ 262 (542)
.++..+..++..+|. +..+.++.+|++.+|.+..+. ++..++.||++++..|++. .+|+. +-.+..|++|||++|
T Consensus 35 ~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~d-iF~l~dLt~lDLShN 113 (1255)
T KOG0444|consen 35 TWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTD-IFRLKDLTILDLSHN 113 (1255)
T ss_pred eEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCch-hcccccceeeecchh
Confidence 455556666667765 456778889999988887764 5788889999999888774 56666 557888999999999
Q ss_pred CCCCcCccccCCCCCCCEEeccCCCCCcccHHh-hcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCcccccccc
Q 037847 263 FPPSTLPSGISGLVSLHHLDLSSTDITGLPQEL-KALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIK 341 (542)
Q Consensus 263 ~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i-~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~ 341 (542)
.+.+.|..+.+.+++-.|+|++|+|..+|..+ -+|+.|-+||+++| .+..+|+. +.+|..|++|.+++|++.-
T Consensus 114 -qL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ-~RRL~~LqtL~Ls~NPL~h--- 187 (1255)
T KOG0444|consen 114 -QLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQ-IRRLSMLQTLKLSNNPLNH--- 187 (1255)
T ss_pred -hhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCHH-HHHHhhhhhhhcCCChhhH---
Confidence 78888988888899999999999999988764 57888899999988 78888887 8889999999998887531
Q ss_pred CCCCccccCCCcchhHhhccccCCceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceee
Q 037847 342 GKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELE 421 (542)
Q Consensus 342 ~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~ 421 (542)
..+.++.++++|++|.++.... ....++....-..++..++++..+. +.....+-++++|+.|+
T Consensus 188 ------------fQLrQLPsmtsL~vLhms~TqR-Tl~N~Ptsld~l~NL~dvDlS~N~L---p~vPecly~l~~LrrLN 251 (1255)
T KOG0444|consen 188 ------------FQLRQLPSMTSLSVLHMSNTQR-TLDNIPTSLDDLHNLRDVDLSENNL---PIVPECLYKLRNLRRLN 251 (1255)
T ss_pred ------------HHHhcCccchhhhhhhcccccc-hhhcCCCchhhhhhhhhccccccCC---CcchHHHhhhhhhheec
Confidence 4556667777777777775432 2233333333334445555544432 22223455677888888
Q ss_pred ecccCccceeeccchh------------hccccc--ccccccCEEEEccCCC---CCcchhhhccCcceEEEeccchhhh
Q 037847 422 LESCNLEEMKIDSTEE------------VKKLFR--NGFRNLNTVVLRSCRG---KDLTWLVFVQNLKQLNMQGFTMEEI 484 (542)
Q Consensus 422 l~~~~~~~~~~~~~~~------------~~~~~~--~~l~~L~~L~L~~c~~---~~~~~l~~l~~L~~L~L~~~~l~~~ 484 (542)
+++|.++++......- .+.+|. -.+++|++|.+.+|++ ..|..++.+..|+.+...+|.++-+
T Consensus 252 LS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElV 331 (1255)
T KOG0444|consen 252 LSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELV 331 (1255)
T ss_pred cCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccC
Confidence 8888887754321110 000000 1234455555555544 2223355555555555555554443
Q ss_pred cccccccccccccCCcCCCCCccceeecccCCcccccCCCCCCCCCcceEeeccCCCC
Q 037847 485 ISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLKSVYPNPQPFPKLKKIQAFHCRQL 542 (542)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~p~L~~L~i~~C~~L 542 (542)
|+.+..+++|+.|.+.. ..|-.+|..+--+|-|+.|+++.-|+|
T Consensus 332 -------------PEglcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 332 -------------PEGLCRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred -------------chhhhhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCcCc
Confidence 45777888888888865 567777777777899999999888775
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.81 E-value=7.3e-21 Score=185.19 Aligned_cols=307 Identities=21% Similarity=0.210 Sum_probs=203.6
Q ss_pred ccccccceEEEeecCCcCCCCCCCCCC-CccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCcc-ccCCCCCCC
Q 037847 202 VEEWEGAKRISLTANGIGSLSEIPTCP-RLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPS-GISGLVSLH 279 (542)
Q Consensus 202 ~~~~~~l~~l~l~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~-~i~~l~~L~ 279 (542)
+..+.+++.+++..|.++.+|.++... ++..|++..|.+..+..+.++.++.||.|||+.| .+..+|. +|..-.+++
T Consensus 98 f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN-~is~i~~~sfp~~~ni~ 176 (873)
T KOG4194|consen 98 FYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN-LISEIPKPSFPAKVNIK 176 (873)
T ss_pred HhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc-hhhcccCCCCCCCCCce
Confidence 456677788888888888888776554 4888888888877777777888888888888888 6766653 455557888
Q ss_pred EEeccCCCCCccc-HHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHh
Q 037847 280 HLDLSSTDITGLP-QELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKE 358 (542)
Q Consensus 280 ~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (542)
+|+|++|+|+.+- ..+..+.+|.+|.+++| .++.+|...+.+|++|+.|++..|.+.-. .-..
T Consensus 177 ~L~La~N~It~l~~~~F~~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~LdLnrN~iriv---------------e~lt 240 (873)
T KOG4194|consen 177 KLNLASNRITTLETGHFDSLNSLLTLKLSRN-RITTLPQRSFKRLPKLESLDLNRNRIRIV---------------EGLT 240 (873)
T ss_pred EEeeccccccccccccccccchheeeecccC-cccccCHHHhhhcchhhhhhccccceeee---------------hhhh
Confidence 8888888888764 34677788888888888 67788877777888888888888775311 0122
Q ss_pred hccccCCceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccchhh
Q 037847 359 LLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEV 438 (542)
Q Consensus 359 l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 438 (542)
+++|.+|+.+.+.-++.....+ ...--+..++.+++..... ..+....+-+++.|+.|+++.|.+..+.++...
T Consensus 241 FqgL~Sl~nlklqrN~I~kL~D--G~Fy~l~kme~l~L~~N~l--~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Ws-- 314 (873)
T KOG4194|consen 241 FQGLPSLQNLKLQRNDISKLDD--GAFYGLEKMEHLNLETNRL--QAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWS-- 314 (873)
T ss_pred hcCchhhhhhhhhhcCcccccC--cceeeecccceeecccchh--hhhhcccccccchhhhhccchhhhheeecchhh--
Confidence 4555666666665544332221 1111123345555544331 222334566788999999999998887765543
Q ss_pred cccccccccccCEEEEccCCC--CCcchhhhccCcceEEEeccchhhhccccccc--cc-------------ccccCCcC
Q 037847 439 KKLFRNGFRNLNTVVLRSCRG--KDLTWLVFVQNLKQLNMQGFTMEEIISVEKLS--DI-------------SEVIGSEH 501 (542)
Q Consensus 439 ~~~~~~~l~~L~~L~L~~c~~--~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~--~~-------------~~~~~~~~ 501 (542)
..++|+.|+|++|.+ -....+..+..|++|.|++|++..+....+.+ ++ .|+-....
T Consensus 315 ------ftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f 388 (873)
T KOG4194|consen 315 ------FTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAF 388 (873)
T ss_pred ------hcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhh
Confidence 378899999998888 33334667788888888888777664432211 00 00001234
Q ss_pred CCCCccceeecccCCcccccCCC-CCCCCCcceEeecc
Q 037847 502 NFFPRLEYLTMWRGTNLKSVYPN-PQPFPKLKKIQAFH 538 (542)
Q Consensus 502 ~~~~~L~~L~l~~c~~l~~~~~~-~~~~p~L~~L~i~~ 538 (542)
.++++|+.|.+.+ .++++++.. ...+++|++|++.+
T Consensus 389 ~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~ 425 (873)
T KOG4194|consen 389 NGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGD 425 (873)
T ss_pred ccchhhhheeecC-ceeeecchhhhccCcccceecCCC
Confidence 4578888888877 467777653 44578888888754
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.79 E-value=3.2e-20 Score=180.71 Aligned_cols=320 Identities=23% Similarity=0.260 Sum_probs=185.7
Q ss_pred EecCcccccCCcccccc-cceEEEeecCCcCCCC--CCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCC
Q 037847 190 VRAGVKLTEAPKVEEWE-GAKRISLTANGIGSLS--EIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPS 266 (542)
Q Consensus 190 ~~~~~~~~~~~~~~~~~-~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 266 (542)
....+.+..+|.+.... ++.+|++.+|.|..+. ++..++.||+|+++.|.++.++...|..-.++++|+|++| .++
T Consensus 108 ~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N-~It 186 (873)
T KOG4194|consen 108 NLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASN-RIT 186 (873)
T ss_pred eeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccc-ccc
Confidence 33445566677665543 4777888877777664 3566677777777777776666555666667777777777 333
Q ss_pred cC-ccccCCCCCCCEEeccCCCCCcccHH-hhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCC
Q 037847 267 TL-PSGISGLVSLHHLDLSSTDITGLPQE-LKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKE 344 (542)
Q Consensus 267 ~l-p~~i~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 344 (542)
.+ -..|..+.+|-+|.|++|+++.+|.- +.+|++|+.|++..| .++.+..-.+..|++|+.|.+..|.+...--+.+
T Consensus 187 ~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN-~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~F 265 (873)
T KOG4194|consen 187 TLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRN-RIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAF 265 (873)
T ss_pred ccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccc-ceeeehhhhhcCchhhhhhhhhhcCcccccCcce
Confidence 33 33556666777777777777776644 334777777777666 3333322225555555555555554432100000
Q ss_pred C--------ccc-cCCCcchhHhhccccCCceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceeccccccc
Q 037847 345 G--------NVL-CDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYME 415 (542)
Q Consensus 345 ~--------~~~-~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~ 415 (542)
- +.. .....-.-+.+-+|+.|+.|+++++...... .+.=.....++.|.++... ....+..++..+.
T Consensus 266 y~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih--~d~WsftqkL~~LdLs~N~--i~~l~~~sf~~L~ 341 (873)
T KOG4194|consen 266 YGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIH--IDSWSFTQKLKELDLSSNR--ITRLDEGSFRVLS 341 (873)
T ss_pred eeecccceeecccchhhhhhcccccccchhhhhccchhhhheee--cchhhhcccceeEeccccc--cccCChhHHHHHH
Confidence 0 000 0000001122456666777777766532111 0111223444555554443 2233344566667
Q ss_pred ccceeeecccCccceeeccchhhcccccccccccCEEEEccCCC-----CCcchhhhccCcceEEEeccchhhhcccccc
Q 037847 416 NLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRG-----KDLTWLVFVQNLKQLNMQGFTMEEIISVEKL 490 (542)
Q Consensus 416 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~-----~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~ 490 (542)
.|++|.+++|.+..+.-..+ ..+.+|++|+|++|.+ ..-..+..+++|+.|.+.+|+++.++..
T Consensus 342 ~Le~LnLs~Nsi~~l~e~af--------~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~kr--- 410 (873)
T KOG4194|consen 342 QLEELNLSHNSIDHLAEGAF--------VGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKR--- 410 (873)
T ss_pred HhhhhcccccchHHHHhhHH--------HHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchh---
Confidence 77777777777665432222 2378999999999887 2223466799999999999999998753
Q ss_pred cccccccCCcCCCCCccceeecccCCcccccCCC-CCCCCCcceEeec
Q 037847 491 SDISEVIGSEHNFFPRLEYLTMWRGTNLKSVYPN-PQPFPKLKKIQAF 537 (542)
Q Consensus 491 ~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~p~L~~L~i~ 537 (542)
...+|++|++|++.+.+ +.++-+. ...| .|++|.+.
T Consensus 411 ---------Afsgl~~LE~LdL~~Na-iaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 411 ---------AFSGLEALEHLDLGDNA-IASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred ---------hhccCcccceecCCCCc-ceeecccccccc-hhhhhhhc
Confidence 56679999999998854 5554332 3334 66666554
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.79 E-value=3.5e-18 Score=193.59 Aligned_cols=320 Identities=21% Similarity=0.199 Sum_probs=227.7
Q ss_pred ceEEEecCcccccCCcccccccceEEEeecCCcCCCC-CCCCCCCccEEEccCcc-cccccchhhccCCCccEEEecCCC
Q 037847 186 QNFLVRAGVKLTEAPKVEEWEGAKRISLTANGIGSLS-EIPTCPRLVTLLLDGNR-IEEITDGFFQSLSTLRVLSLRGNF 263 (542)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~-~~~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~~ 263 (542)
...+...+.....+|......+++.|++.++.+..++ .+..+++|+.|+++++. +..++. ++.+++|+.|++++|.
T Consensus 591 Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~ 668 (1153)
T PLN03210 591 LRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCS 668 (1153)
T ss_pred cEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCC
Confidence 3444455556666776666789999999999998875 47789999999999874 555554 7889999999999998
Q ss_pred CCCcCccccCCCCCCCEEeccCC-CCCcccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccC
Q 037847 264 PPSTLPSGISGLVSLHHLDLSST-DITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKG 342 (542)
Q Consensus 264 ~~~~lp~~i~~l~~L~~L~l~~~-~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~ 342 (542)
.+..+|.+++++.+|++|++++| .++.+|..+ ++++|++|++++|..+..+|.. .++|+.|++.++.+. .+|.
T Consensus 669 ~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~----~~nL~~L~L~~n~i~-~lP~ 742 (1153)
T PLN03210 669 SLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI----STNISWLDLDETAIE-EFPS 742 (1153)
T ss_pred CccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc----cCCcCeeecCCCccc-cccc
Confidence 89999999999999999999997 788899876 8999999999999888787752 467889999888754 3443
Q ss_pred CCC--cc----ccC-CCcch--------hHhhccccCCceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCce
Q 037847 343 KEG--NV----LCD-GAEPL--------MKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFN 407 (542)
Q Consensus 343 ~~~--~~----~~~-~~~~~--------~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~ 407 (542)
... +. .+. ..... .......++|+.|+++.+... ..++....-...++.|++.+|.... .
T Consensus 743 ~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l--~~lP~si~~L~~L~~L~Ls~C~~L~---~ 817 (1153)
T PLN03210 743 NLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSL--VELPSSIQNLHKLEHLEIENCINLE---T 817 (1153)
T ss_pred cccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCc--cccChhhhCCCCCCEEECCCCCCcC---e
Confidence 211 00 000 00000 000112356777777655321 1122222334567888887765311 1
Q ss_pred ecccccccccceeeecccCccceeeccchhhcccccccccccCEEEEccCCC-CCcchhhhccCcceEEEec-cchhhhc
Q 037847 408 VLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRG-KDLTWLVFVQNLKQLNMQG-FTMEEII 485 (542)
Q Consensus 408 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~-~~~~~l~~l~~L~~L~L~~-~~l~~~~ 485 (542)
......+++|++|++++|......+ ....+|+.|+|+++.+ ..+.++..+++|+.|+|++ +.++.++
T Consensus 818 LP~~~~L~sL~~L~Ls~c~~L~~~p-----------~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~ 886 (1153)
T PLN03210 818 LPTGINLESLESLDLSGCSRLRTFP-----------DISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVS 886 (1153)
T ss_pred eCCCCCccccCEEECCCCCcccccc-----------ccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccC
Confidence 1112257899999999997654211 1257899999999999 7777899999999999999 8888775
Q ss_pred ccccccccccccCCcCCCCCccceeecccCCcccccCCCC-------------CCCCCcceEeeccCCCC
Q 037847 486 SVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLKSVYPNP-------------QPFPKLKKIQAFHCRQL 542 (542)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~-------------~~~p~L~~L~i~~C~~L 542 (542)
. ....+++|+.|.+.+|+++.+++... ..+|+...+.+.+|.+|
T Consensus 887 ~-------------~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L 943 (1153)
T PLN03210 887 L-------------NISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNL 943 (1153)
T ss_pred c-------------ccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCC
Confidence 4 56678999999999999998764321 13555666778888765
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.76 E-value=3.1e-20 Score=182.10 Aligned_cols=286 Identities=17% Similarity=0.158 Sum_probs=189.4
Q ss_pred ccccceEEEeecCCcCC--CC-CCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccC-CCCCCC
Q 037847 204 EWEGAKRISLTANGIGS--LS-EIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGIS-GLVSLH 279 (542)
Q Consensus 204 ~~~~l~~l~l~~~~~~~--~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~-~l~~L~ 279 (542)
.++.+|.+.+..|+++. +| ++..+..|.+|+++.|.+...|.. +...+++-+|+|++| .+..+|.++. ++..|-
T Consensus 76 ~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~-LE~AKn~iVLNLS~N-~IetIPn~lfinLtDLL 153 (1255)
T KOG0444|consen 76 DLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTN-LEYAKNSIVLNLSYN-NIETIPNSLFINLTDLL 153 (1255)
T ss_pred cchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchh-hhhhcCcEEEEcccC-ccccCCchHHHhhHhHh
Confidence 34456666666666543 33 466777777777777777777665 677777777777777 6777776543 677777
Q ss_pred EEeccCCCCCcccHHhhcCCCCCEEeccCCcc----cCccchhhcCCCCCCcEEeccCccccc-cccCCCC--------c
Q 037847 280 HLDLSSTDITGLPQELKALEKLRYLNLDYAFH----LSIIPHQLISCFSKLEVLRLCGCGRFG-VIKGKEG--------N 346 (542)
Q Consensus 280 ~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~----~~~lp~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~--------~ 346 (542)
+|||++|++..+|+.+..|.+|++|++++|.. +..+| .|++|+.|++++.+.+- .+|.... +
T Consensus 154 fLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLP-----smtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvD 228 (1255)
T KOG0444|consen 154 FLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLP-----SMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVD 228 (1255)
T ss_pred hhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCc-----cchhhhhhhcccccchhhcCCCchhhhhhhhhcc
Confidence 77777777777777777777777777777742 22333 35667777776665432 2333221 1
Q ss_pred cccCCCcchhHhhccccCCceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccC
Q 037847 347 VLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCN 426 (542)
Q Consensus 347 ~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 426 (542)
.+++..+..+..+-++.+|+.|+++.+... .+........++++|+++.... ......+.+++.|+.|.+.+|.
T Consensus 229 lS~N~Lp~vPecly~l~~LrrLNLS~N~it---eL~~~~~~W~~lEtLNlSrNQL---t~LP~avcKL~kL~kLy~n~Nk 302 (1255)
T KOG0444|consen 229 LSENNLPIVPECLYKLRNLRRLNLSGNKIT---ELNMTEGEWENLETLNLSRNQL---TVLPDAVCKLTKLTKLYANNNK 302 (1255)
T ss_pred ccccCCCcchHHHhhhhhhheeccCcCcee---eeeccHHHHhhhhhhccccchh---ccchHHHhhhHHHHHHHhccCc
Confidence 233444456666677777777777755422 2222333445566666655443 1122345567777888777776
Q ss_pred ccce-eeccchhhcccccccccccCEEEEccCCC-CCcchhhhccCcceEEEeccchhhhcccccccccccccCCcCCCC
Q 037847 427 LEEM-KIDSTEEVKKLFRNGFRNLNTVVLRSCRG-KDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFF 504 (542)
Q Consensus 427 ~~~~-~~~~~~~~~~~~~~~l~~L~~L~L~~c~~-~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 504 (542)
+.-. .+.+ ++.+.+|+.+..++|.+ -.|..+..+++|+.|.|+.|.+..++. .+..+
T Consensus 303 L~FeGiPSG--------IGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLPe-------------aIHlL 361 (1255)
T KOG0444|consen 303 LTFEGIPSG--------IGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLPE-------------AIHLL 361 (1255)
T ss_pred ccccCCccc--------hhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccceeechh-------------hhhhc
Confidence 6431 1122 24488999999999999 777779999999999999999988854 78889
Q ss_pred CccceeecccCCcccccCC
Q 037847 505 PRLEYLTMWRGTNLKSVYP 523 (542)
Q Consensus 505 ~~L~~L~l~~c~~l~~~~~ 523 (542)
+.|+.|++...|+|.-=|.
T Consensus 362 ~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 362 PDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred CCcceeeccCCcCccCCCC
Confidence 9999999999998865433
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.75 E-value=3.5e-20 Score=172.87 Aligned_cols=312 Identities=23% Similarity=0.256 Sum_probs=158.2
Q ss_pred cccccccceEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCE
Q 037847 201 KVEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHH 280 (542)
Q Consensus 201 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~ 280 (542)
+..+++.+..++++.|++..+|+|.+|+.|..|.+..|.++.++....+.+.++.+||++.| .++++|+.++.+.+|.+
T Consensus 201 ~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdN-klke~Pde~clLrsL~r 279 (565)
T KOG0472|consen 201 ELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDN-KLKEVPDEICLLRSLER 279 (565)
T ss_pred hhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccc-ccccCchHHHHhhhhhh
Confidence 45556666666777777777777777777777777777666666665556777777777777 66777777777777777
Q ss_pred EeccCCCCCcccHHhhcCCCCCEEeccCCcccCccchhhcCCCC--CCcEEec-cCccccccccCCCCccc-cCCCcchh
Q 037847 281 LDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFS--KLEVLRL-CGCGRFGVIKGKEGNVL-CDGAEPLM 356 (542)
Q Consensus 281 L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~--~L~~L~l-~~~~~~~~~~~~~~~~~-~~~~~~~~ 356 (542)
||+++|.|+.+|.+++++ +|+.|.+.+| -++.+-.+++.+-+ -|++|+- ..|...+. + ..+... ........
T Consensus 280 LDlSNN~is~Lp~sLgnl-hL~~L~leGN-PlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~-s-e~~~e~~~t~~~~~~ 355 (565)
T KOG0472|consen 280 LDLSNNDISSLPYSLGNL-HLKFLALEGN-PLRTIRREIISKGTQEVLKYLRSKIKDDGLSQ-S-EGGTETAMTLPSESF 355 (565)
T ss_pred hcccCCccccCCcccccc-eeeehhhcCC-chHHHHHHHHcccHHHHHHHHHHhhccCCCCC-C-cccccccCCCCCCcc
Confidence 777777777777777777 7777777776 33434333222211 0122211 00000000 0 000000 01111222
Q ss_pred HhhccccCCceeeeEecchHH-HHHhhcCchhhccceeEEeccccC---------------------CCCCceecccccc
Q 037847 357 KELLGLKHLNVLSWSFGSSLA-VQKFLKYPKLVSITQSVWVECGTY---------------------TRPPFNVLHLAYM 414 (542)
Q Consensus 357 ~~l~~L~~L~~l~~~~~~~~~-~~~l~~~~~~~~~l~~l~l~~~~~---------------------~~~~~~~~~l~~l 414 (542)
.....+.+.+.|+++...... ..+.++..+ .....+.+++.... ....+....+..+
T Consensus 356 ~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~-~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l 434 (565)
T KOG0472|consen 356 PDIYAIITTKILDVSDKQLTLVPDEVFEAAK-SEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQL 434 (565)
T ss_pred cchhhhhhhhhhcccccccccCCHHHHHHhh-hcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhh
Confidence 233444555556555332110 001111100 00111122211110 0111111223334
Q ss_pred cccceeeecccCccceeeccchhhcccccccccccCEEEEccCCC-CCcchhhhccCcceEEEeccchhhhccccccccc
Q 037847 415 ENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRG-KDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDI 493 (542)
Q Consensus 415 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~-~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~ 493 (542)
++|..|++++|.+..+|.+... +..|+.|+++.|.+ ..|..+..+.-|+.+-.++|++..++
T Consensus 435 ~kLt~L~L~NN~Ln~LP~e~~~---------lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd-------- 497 (565)
T KOG0472|consen 435 QKLTFLDLSNNLLNDLPEEMGS---------LVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVD-------- 497 (565)
T ss_pred hcceeeecccchhhhcchhhhh---------hhhhheecccccccccchHHHhhHHHHHHHHhccccccccC--------
Confidence 4444444444444444333222 33344444444444 22222333333333333334444433
Q ss_pred ccccCCcCCCCCccceeecccCCcccccCCCCCCCCCcceEeeccCC
Q 037847 494 SEVIGSEHNFFPRLEYLTMWRGTNLKSVYPNPQPFPKLKKIQAFHCR 540 (542)
Q Consensus 494 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~p~L~~L~i~~C~ 540 (542)
++....+.+|..|++.+ ..++.+|+..+.|.+|++|++.|=|
T Consensus 498 ----~~~l~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 498 ----PSGLKNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred ----hHHhhhhhhcceeccCC-CchhhCChhhccccceeEEEecCCc
Confidence 23577899999999988 4799999999999999999998854
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.63 E-value=1.6e-18 Score=161.90 Aligned_cols=247 Identities=23% Similarity=0.286 Sum_probs=147.8
Q ss_pred ccccccceEEEeecCCcCCCC-CCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCE
Q 037847 202 VEEWEGAKRISLTANGIGSLS-EIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHH 280 (542)
Q Consensus 202 ~~~~~~l~~l~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~ 280 (542)
...+..+..+.+++|....+| .++.+..+..++.+.|.+..+|+. ++.+..|+.|+.+.| ...++|++|+.+..|..
T Consensus 64 l~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~-i~s~~~l~~l~~s~n-~~~el~~~i~~~~~l~d 141 (565)
T KOG0472|consen 64 LKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQ-IGSLISLVKLDCSSN-ELKELPDSIGRLLDLED 141 (565)
T ss_pred hhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHH-Hhhhhhhhhhhcccc-ceeecCchHHHHhhhhh
Confidence 344456667777777776664 567777777777777777777766 667777888888777 67777778888888888
Q ss_pred EeccCCCCCcccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhc
Q 037847 281 LDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELL 360 (542)
Q Consensus 281 L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 360 (542)
++..+|.++.+|..++++.+|..+++.+| .+..+|+..+. ++.|++|++..|-+. ..+.+++
T Consensus 142 l~~~~N~i~slp~~~~~~~~l~~l~~~~n-~l~~l~~~~i~-m~~L~~ld~~~N~L~----------------tlP~~lg 203 (565)
T KOG0472|consen 142 LDATNNQISSLPEDMVNLSKLSKLDLEGN-KLKALPENHIA-MKRLKHLDCNSNLLE----------------TLPPELG 203 (565)
T ss_pred hhccccccccCchHHHHHHHHHHhhcccc-chhhCCHHHHH-HHHHHhcccchhhhh----------------cCChhhc
Confidence 88878888888888888888888888777 56667766344 777888877665433 2334466
Q ss_pred cccCCceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccchhhcc
Q 037847 361 GLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKK 440 (542)
Q Consensus 361 ~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 440 (542)
.++.|..|.+.-+......++... +.+..+++..... .-........+++|..|++.+|++.++|.+...
T Consensus 204 ~l~~L~~LyL~~Nki~~lPef~gc----s~L~Elh~g~N~i--~~lpae~~~~L~~l~vLDLRdNklke~Pde~cl---- 273 (565)
T KOG0472|consen 204 GLESLELLYLRRNKIRFLPEFPGC----SLLKELHVGENQI--EMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICL---- 273 (565)
T ss_pred chhhhHHHHhhhcccccCCCCCcc----HHHHHHHhcccHH--HhhHHHHhcccccceeeeccccccccCchHHHH----
Confidence 666666655554332211111110 1111111111100 000112233455666666666666655433321
Q ss_pred cccccccccCEEEEccCCC-CCcchhhhccCcceEEEeccchhhh
Q 037847 441 LFRNGFRNLNTVVLRSCRG-KDLTWLVFVQNLKQLNMQGFTMEEI 484 (542)
Q Consensus 441 ~~~~~l~~L~~L~L~~c~~-~~~~~l~~l~~L~~L~L~~~~l~~~ 484 (542)
+.+|.+|++++|.+ ..+..++++ +|+.|.+.+|.+..+
T Consensus 274 -----LrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTi 312 (565)
T KOG0472|consen 274 -----LRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTI 312 (565)
T ss_pred -----hhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHH
Confidence 45566666666666 555556666 666666666665554
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.60 E-value=1.1e-14 Score=154.01 Aligned_cols=252 Identities=21% Similarity=0.185 Sum_probs=144.8
Q ss_pred EEEecCcccccCCcccccccceEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCc
Q 037847 188 FLVRAGVKLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPST 267 (542)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 267 (542)
.+......++.+|... ..+++.|++.+|.++.+|.. .++|++|++++|.++.+|.. .++|+.|++++| .+..
T Consensus 205 ~LdLs~~~LtsLP~~l-~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~l----p~sL~~L~Ls~N-~L~~ 276 (788)
T PRK15387 205 VLNVGESGLTTLPDCL-PAHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPVL----PPGLLELSIFSN-PLTH 276 (788)
T ss_pred EEEcCCCCCCcCCcch-hcCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcccCc----ccccceeeccCC-chhh
Confidence 3444444555555422 24677777777777777653 46777777777777666532 356777777777 5566
Q ss_pred CccccCCCCCCCEEeccCCCCCcccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCcc
Q 037847 268 LPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNV 347 (542)
Q Consensus 268 lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 347 (542)
+|... ..|+.|++++|.++.+|.. +++|+.|++++| .+..+|.. . .+|+.|.+.+|.+.+ +|.
T Consensus 277 Lp~lp---~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N-~L~~Lp~l-p---~~L~~L~Ls~N~L~~-LP~----- 339 (788)
T PRK15387 277 LPALP---SGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPAL-P---SELCKLWAYNNQLTS-LPT----- 339 (788)
T ss_pred hhhch---hhcCEEECcCCcccccccc---ccccceeECCCC-ccccCCCC-c---ccccccccccCcccc-ccc-----
Confidence 66422 4566777777777777653 456777777777 55556542 2 346666666665532 111
Q ss_pred ccCCCcchhHhhccccCCceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCc
Q 037847 348 LCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNL 427 (542)
Q Consensus 348 ~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 427 (542)
+ ..+|+.|+++.+.... .+.....+..|++....... +.. .+.+|+.|++++|.+
T Consensus 340 -----------l--p~~Lq~LdLS~N~Ls~------LP~lp~~L~~L~Ls~N~L~~----LP~--l~~~L~~LdLs~N~L 394 (788)
T PRK15387 340 -----------L--PSGLQELSVSDNQLAS------LPTLPSELYKLWAYNNRLTS----LPA--LPSGLKELIVSGNRL 394 (788)
T ss_pred -----------c--ccccceEecCCCccCC------CCCCCcccceehhhcccccc----Ccc--cccccceEEecCCcc
Confidence 0 1356666666554321 11122344445444332111 111 124677777777776
Q ss_pred cceeeccchhhcccccccccccCEEEEccCCCCCcchhhhccCcceEEEeccchhhhcccccccccccccCCcCCCCCcc
Q 037847 428 EEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRL 507 (542)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L 507 (542)
..++. .+++|+.|++++|.+..+|.+ +.+|+.|++++|.++.++. ....+++|
T Consensus 395 t~LP~------------l~s~L~~LdLS~N~LssIP~l--~~~L~~L~Ls~NqLt~LP~-------------sl~~L~~L 447 (788)
T PRK15387 395 TSLPV------------LPSELKELMVSGNRLTSLPML--PSGLLSLSVYRNQLTRLPE-------------SLIHLSSE 447 (788)
T ss_pred cCCCC------------cccCCCEEEccCCcCCCCCcc--hhhhhhhhhccCcccccCh-------------HHhhccCC
Confidence 65331 135677778877777333322 3467777777777776643 55567778
Q ss_pred ceeecccCC
Q 037847 508 EYLTMWRGT 516 (542)
Q Consensus 508 ~~L~l~~c~ 516 (542)
+.|++.+++
T Consensus 448 ~~LdLs~N~ 456 (788)
T PRK15387 448 TTVNLEGNP 456 (788)
T ss_pred CeEECCCCC
Confidence 888887754
No 14
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.52 E-value=2.7e-16 Score=130.39 Aligned_cols=159 Identities=27% Similarity=0.399 Sum_probs=126.7
Q ss_pred cccCCcccccccceEEEeecCCcCCC-CCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCC
Q 037847 196 LTEAPKVEEWEGAKRISLTANGIGSL-SEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISG 274 (542)
Q Consensus 196 ~~~~~~~~~~~~l~~l~l~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~ 274 (542)
..+++.+..++++.++.+++|.+..+ |.+..+.+|++|.+++|+++.+|.+ ++.+++||.|++.-| .+..+|..||.
T Consensus 23 f~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~-issl~klr~lnvgmn-rl~~lprgfgs 100 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTS-ISSLPKLRILNVGMN-RLNILPRGFGS 100 (264)
T ss_pred HhhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChh-hhhchhhhheecchh-hhhcCccccCC
Confidence 34456666778888889999988877 4688888999999999988888877 888999999999888 67888889999
Q ss_pred CCCCCEEeccCCCCCc--ccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCC
Q 037847 275 LVSLHHLDLSSTDITG--LPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGA 352 (542)
Q Consensus 275 l~~L~~L~l~~~~i~~--lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 352 (542)
++.|+.||+++|++.+ +|..+..++-|+.|.+++| ....+|.+ ++++++|+.|.+..|.+.
T Consensus 101 ~p~levldltynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~d-vg~lt~lqil~lrdndll--------------- 163 (264)
T KOG0617|consen 101 FPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPD-VGKLTNLQILSLRDNDLL--------------- 163 (264)
T ss_pred CchhhhhhccccccccccCCcchhHHHHHHHHHhcCC-CcccCChh-hhhhcceeEEeeccCchh---------------
Confidence 9999999998887765 8888888888888888888 56777877 788888888888877654
Q ss_pred cchhHhhccccCCceeeeEecc
Q 037847 353 EPLMKELLGLKHLNVLSWSFGS 374 (542)
Q Consensus 353 ~~~~~~l~~L~~L~~l~~~~~~ 374 (542)
..+.+++.|+.|+.|++..+.
T Consensus 164 -~lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 164 -SLPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred -hCcHHHHHHHHHHHHhcccce
Confidence 345566677777777666543
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.52 E-value=5.9e-14 Score=149.37 Aligned_cols=246 Identities=16% Similarity=0.185 Sum_probs=132.6
Q ss_pred ceEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccCCC
Q 037847 208 AKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTD 287 (542)
Q Consensus 208 l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~ 287 (542)
...+.+.++.+..+|... .++++.|++++|.++.+|...+ .+|++|++++| .+..+|..+. .+|+.|++++|.
T Consensus 180 ~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~N~ 252 (754)
T PRK15370 180 KTELRLKILGLTTIPACI-PEQITTLILDNNELKSLPENLQ---GNIKTLYANSN-QLTSIPATLP--DTIQEMELSINR 252 (754)
T ss_pred ceEEEeCCCCcCcCCccc-ccCCcEEEecCCCCCcCChhhc---cCCCEEECCCC-ccccCChhhh--ccccEEECcCCc
Confidence 345556655555555311 2456666666666666555422 35666666666 4556665443 356666666666
Q ss_pred CCcccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCCce
Q 037847 288 ITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNV 367 (542)
Q Consensus 288 i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~ 367 (542)
+..+|..+. .+|+.|++++| .+..+|.. +. ++|+.|++++|.+.+ +|. . +. .+|+.
T Consensus 253 L~~LP~~l~--s~L~~L~Ls~N-~L~~LP~~-l~--~sL~~L~Ls~N~Lt~-LP~-----------~----lp--~sL~~ 308 (754)
T PRK15370 253 ITELPERLP--SALQSLDLFHN-KISCLPEN-LP--EELRYLSVYDNSIRT-LPA-----------H----LP--SGITH 308 (754)
T ss_pred cCcCChhHh--CCCCEEECcCC-ccCccccc-cC--CCCcEEECCCCcccc-Ccc-----------c----ch--hhHHH
Confidence 666666553 36666666665 45556654 22 356666666665442 111 0 00 12333
Q ss_pred eeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccchhhccccccccc
Q 037847 368 LSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFR 447 (542)
Q Consensus 368 l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~ 447 (542)
|+++.+..... .. .....++.|.+.++..+..+ ..+ .++|+.|++++|.+..++. ..++
T Consensus 309 L~Ls~N~Lt~L---P~--~l~~sL~~L~Ls~N~Lt~LP---~~l--~~sL~~L~Ls~N~L~~LP~-----------~lp~ 367 (754)
T PRK15370 309 LNVQSNSLTAL---PE--TLPPGLKTLEAGENALTSLP---ASL--PPELQVLDVSKNQITVLPE-----------TLPP 367 (754)
T ss_pred HHhcCCccccC---Cc--cccccceeccccCCccccCC---hhh--cCcccEEECCCCCCCcCCh-----------hhcC
Confidence 33333321110 00 01123444444443321111 111 2588888888888765432 1146
Q ss_pred ccCEEEEccCCC-CCcchhhhccCcceEEEeccchhhhcccccccccccccCCcCCCCCccceeecccCC
Q 037847 448 NLNTVVLRSCRG-KDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGT 516 (542)
Q Consensus 448 ~L~~L~L~~c~~-~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 516 (542)
+|+.|+|++|.+ ..++.+. ++|+.|++++|.+..++.. .+.....++++..|.+.+.+
T Consensus 368 ~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~N~L~~LP~s---------l~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 368 TITTLDVSRNALTNLPENLP--AALQIMQASRNNLVRLPES---------LPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred CcCEEECCCCcCCCCCHhHH--HHHHHHhhccCCcccCchh---------HHHHhhcCCCccEEEeeCCC
Confidence 788888888888 4444432 4688888888888766431 01123345778888887754
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.51 E-value=8.8e-16 Score=157.88 Aligned_cols=258 Identities=22% Similarity=0.291 Sum_probs=125.9
Q ss_pred cceEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccCC
Q 037847 207 GAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSST 286 (542)
Q Consensus 207 ~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~ 286 (542)
.++++....|.+..........+|++++++.+.++.+| +.++.+.+|+.++..+| .+..+|..+.....|++|.+.+|
T Consensus 220 ~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N-~l~~lp~ri~~~~~L~~l~~~~n 297 (1081)
T KOG0618|consen 220 SLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLP-EWIGACANLEALNANHN-RLVALPLRISRITSLVSLSAAYN 297 (1081)
T ss_pred chheeeeccCcceeeccccccccceeeecchhhhhcch-HHHHhcccceEecccch-hHHhhHHHHhhhhhHHHHHhhhh
Confidence 34444444444443333334445555555555555555 44555555555555555 34555555555555555555555
Q ss_pred CCCcccHHhhcCCCCCEEeccCCcccCccchhhcCCCCC-CcEEeccCccccccccCCCCccc----------cCCCcch
Q 037847 287 DITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSK-LEVLRLCGCGRFGVIKGKEGNVL----------CDGAEPL 355 (542)
Q Consensus 287 ~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~-L~~L~l~~~~~~~~~~~~~~~~~----------~~~~~~~ 355 (542)
.++.+|+....++.|++|++..| .+..+|..++..+.. |+.|+.+.+.+.. .|....+.. .......
T Consensus 298 el~yip~~le~~~sL~tLdL~~N-~L~~lp~~~l~v~~~~l~~ln~s~n~l~~-lp~~~e~~~~~Lq~LylanN~Ltd~c 375 (1081)
T KOG0618|consen 298 ELEYIPPFLEGLKSLRTLDLQSN-NLPSLPDNFLAVLNASLNTLNVSSNKLST-LPSYEENNHAALQELYLANNHLTDSC 375 (1081)
T ss_pred hhhhCCCcccccceeeeeeehhc-cccccchHHHhhhhHHHHHHhhhhccccc-cccccchhhHHHHHHHHhcCcccccc
Confidence 55555555555555555555555 444455432222221 3333333322211 111000000 0111112
Q ss_pred hHhhccccCCceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccc
Q 037847 356 MKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDST 435 (542)
Q Consensus 356 ~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 435 (542)
+.-+.+..+|+.|+++++.. ..+..+.+.+++.|++|+++||.+..++..
T Consensus 376 ~p~l~~~~hLKVLhLsyNrL----------------------------~~fpas~~~kle~LeeL~LSGNkL~~Lp~t-- 425 (1081)
T KOG0618|consen 376 FPVLVNFKHLKVLHLSYNRL----------------------------NSFPASKLRKLEELEELNLSGNKLTTLPDT-- 425 (1081)
T ss_pred hhhhccccceeeeeeccccc----------------------------ccCCHHHHhchHHhHHHhcccchhhhhhHH--
Confidence 22233333333333333211 112234455566666677777766665421
Q ss_pred hhhcccccccccccCEEEEccCCCCCcchhhhccCcceEEEeccchhhhcccccccccccccCCcCCCCCccceeecccC
Q 037847 436 EEVKKLFRNGFRNLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRG 515 (542)
Q Consensus 436 ~~~~~~~~~~l~~L~~L~L~~c~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c 515 (542)
...++.|++|...+|.+..+|.+.+++.|+.+||+.|.++.+...+ ... -|+|++|++.+.
T Consensus 426 -------va~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~-----------~~p-~p~LkyLdlSGN 486 (1081)
T KOG0618|consen 426 -------VANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCNNLSEVTLPE-----------ALP-SPNLKYLDLSGN 486 (1081)
T ss_pred -------HHhhhhhHHHhhcCCceeechhhhhcCcceEEecccchhhhhhhhh-----------hCC-CcccceeeccCC
Confidence 1336677777776666655556777777777777777776654311 111 167777777776
Q ss_pred Cc
Q 037847 516 TN 517 (542)
Q Consensus 516 ~~ 517 (542)
+.
T Consensus 487 ~~ 488 (1081)
T KOG0618|consen 487 TR 488 (1081)
T ss_pred cc
Confidence 54
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.47 E-value=2e-13 Score=145.34 Aligned_cols=242 Identities=17% Similarity=0.151 Sum_probs=170.2
Q ss_pred CCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccCCCCCcccHHhhcCCCCCEEecc
Q 037847 228 PRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLD 307 (542)
Q Consensus 228 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~ 307 (542)
.+...|+++++.++.+|.. + .++|+.|++++| .+..+|..+. .+|++|++++|.++.+|..+. .+|+.|+++
T Consensus 178 ~~~~~L~L~~~~LtsLP~~-I--p~~L~~L~Ls~N-~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 178 NNKTELRLKILGLTTIPAC-I--PEQITTLILDNN-ELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELS 249 (754)
T ss_pred cCceEEEeCCCCcCcCCcc-c--ccCCcEEEecCC-CCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECc
Confidence 3567899999988888765 3 257999999999 7889998765 589999999999999998764 489999999
Q ss_pred CCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCCceeeeEecchHHHHHhhcCchh
Q 037847 308 YAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKL 387 (542)
Q Consensus 308 ~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~ 387 (542)
+| .+..+|.. +. ++|+.|++++|.+.. +|. .+. .+|+.|+++.+..... .. .+
T Consensus 250 ~N-~L~~LP~~-l~--s~L~~L~Ls~N~L~~-LP~---------------~l~--~sL~~L~Ls~N~Lt~L---P~--~l 302 (754)
T PRK15370 250 IN-RITELPER-LP--SALQSLDLFHNKISC-LPE---------------NLP--EELRYLSVYDNSIRTL---PA--HL 302 (754)
T ss_pred CC-ccCcCChh-Hh--CCCCEEECcCCccCc-ccc---------------ccC--CCCcEEECCCCccccC---cc--cc
Confidence 99 67788876 33 589999999887752 332 111 3678888876643221 11 11
Q ss_pred hccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccchhhcccccccccccCEEEEccCCC-CCcchhh
Q 037847 388 VSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRG-KDLTWLV 466 (542)
Q Consensus 388 ~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~-~~~~~l~ 466 (542)
...++.|++.++.....+ ....++|+.|++++|.+..++. ..+++|+.|++++|.+ ..+..+
T Consensus 303 p~sL~~L~Ls~N~Lt~LP-----~~l~~sL~~L~Ls~N~Lt~LP~-----------~l~~sL~~L~Ls~N~L~~LP~~l- 365 (754)
T PRK15370 303 PSGITHLNVQSNSLTALP-----ETLPPGLKTLEAGENALTSLPA-----------SLPPELQVLDVSKNQITVLPETL- 365 (754)
T ss_pred hhhHHHHHhcCCccccCC-----ccccccceeccccCCccccCCh-----------hhcCcccEEECCCCCCCcCChhh-
Confidence 234555666554321111 1123689999999998876432 1147899999999988 433333
Q ss_pred hccCcceEEEeccchhhhcccccccccccccCCcCCCCCccceeecccCCcccccCCCC----CCCCCcceEeecc
Q 037847 467 FVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLKSVYPNP----QPFPKLKKIQAFH 538 (542)
Q Consensus 467 ~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~----~~~p~L~~L~i~~ 538 (542)
.++|++|+|++|.+..++. .. ..+|+.|++.++ ++..+|... ..+|++..|++.+
T Consensus 366 -p~~L~~LdLs~N~Lt~LP~-------------~l--~~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~ 424 (754)
T PRK15370 366 -PPTITTLDVSRNALTNLPE-------------NL--PAALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEY 424 (754)
T ss_pred -cCCcCEEECCCCcCCCCCH-------------hH--HHHHHHHhhccC-CcccCchhHHHHhhcCCCccEEEeeC
Confidence 4799999999999887753 21 347889999885 566665432 2357888888865
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.45 E-value=6.2e-13 Score=140.85 Aligned_cols=234 Identities=21% Similarity=0.195 Sum_probs=168.9
Q ss_pred EEEecCcccccCCcccccccceEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCc
Q 037847 188 FLVRAGVKLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPST 267 (542)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 267 (542)
.+...++.++.+|.. ..+++.|++.+|.+..+|.. .++|+.|++++|.+..++.. ..+|+.|++++| .+..
T Consensus 226 ~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~l--p~sL~~L~Ls~N~L~~Lp~l----p~~L~~L~Ls~N-~Lt~ 296 (788)
T PRK15387 226 TLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPVL--PPGLLELSIFSNPLTHLPAL----PSGLCKLWIFGN-QLTS 296 (788)
T ss_pred EEEccCCcCCCCCCC--CCCCcEEEecCCccCcccCc--ccccceeeccCCchhhhhhc----hhhcCEEECcCC-cccc
Confidence 344455666767653 47899999999999998754 47899999999988876652 367889999999 7888
Q ss_pred CccccCCCCCCCEEeccCCCCCcccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCcc
Q 037847 268 LPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNV 347 (542)
Q Consensus 268 lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 347 (542)
+|.. +++|++|++++|.++.+|.. ..+|+.|++++| .+..+|. + ..+|++|++++|++.+ +|.
T Consensus 297 LP~~---p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~N-~L~~LP~--l--p~~Lq~LdLS~N~Ls~-LP~----- 359 (788)
T PRK15387 297 LPVL---PPGLQELSVSDNQLASLPAL---PSELCKLWAYNN-QLTSLPT--L--PSGLQELSVSDNQLAS-LPT----- 359 (788)
T ss_pred cccc---ccccceeECCCCccccCCCC---cccccccccccC-ccccccc--c--ccccceEecCCCccCC-CCC-----
Confidence 8853 46899999999999998863 346778889998 6777875 2 2579999999998763 221
Q ss_pred ccCCCcchhHhhccccCCceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCc
Q 037847 348 LCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNL 427 (542)
Q Consensus 348 ~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 427 (542)
. ..+|+.|+++.+.... .+.....++.|++..+.....+ ...++|+.|++++|.+
T Consensus 360 -------l------p~~L~~L~Ls~N~L~~------LP~l~~~L~~LdLs~N~Lt~LP------~l~s~L~~LdLS~N~L 414 (788)
T PRK15387 360 -------L------PSELYKLWAYNNRLTS------LPALPSGLKELIVSGNRLTSLP------VLPSELKELMVSGNRL 414 (788)
T ss_pred -------C------Ccccceehhhcccccc------CcccccccceEEecCCcccCCC------CcccCCCEEEccCCcC
Confidence 1 1234445555443221 1222345777887665432111 1236899999999998
Q ss_pred cceeeccchhhcccccccccccCEEEEccCCC-CCcchhhhccCcceEEEeccchhhh
Q 037847 428 EEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRG-KDLTWLVFVQNLKQLNMQGFTMEEI 484 (542)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~-~~~~~l~~l~~L~~L~L~~~~l~~~ 484 (542)
..+|. .+.+|+.|++++|.+ ..+..+..+++|+.|+|++|.+...
T Consensus 415 ssIP~------------l~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 415 TSLPM------------LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSER 460 (788)
T ss_pred CCCCc------------chhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCch
Confidence 87542 146789999999999 6666788999999999999988754
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.44 E-value=2.6e-14 Score=147.24 Aligned_cols=107 Identities=26% Similarity=0.346 Sum_probs=63.8
Q ss_pred ceEEEeecCCcCCCC-CCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccCC
Q 037847 208 AKRISLTANGIGSLS-EIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSST 286 (542)
Q Consensus 208 l~~l~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~ 286 (542)
+.+|+++.|.+..+| .+..+.+|+.|.++.|.+...|.. ...+.+|++|.|.+| ....+|.++..+++|++|+++.|
T Consensus 47 L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s-~~~~~~l~~lnL~~n-~l~~lP~~~~~lknl~~LdlS~N 124 (1081)
T KOG0618|consen 47 LKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSS-CSNMRNLQYLNLKNN-RLQSLPASISELKNLQYLDLSFN 124 (1081)
T ss_pred eEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchh-hhhhhcchhheeccc-hhhcCchhHHhhhcccccccchh
Confidence 556666666666555 355556666666666655555533 556666666666666 56666666666666666666666
Q ss_pred CCCcccHHhhcCCCCCEEeccCCcccCccc
Q 037847 287 DITGLPQELKALEKLRYLNLDYAFHLSIIP 316 (542)
Q Consensus 287 ~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp 316 (542)
.+..+|..+..+..+..+..++|..+..++
T Consensus 125 ~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg 154 (1081)
T KOG0618|consen 125 HFGPIPLVIEVLTAEEELAASNNEKIQRLG 154 (1081)
T ss_pred ccCCCchhHHhhhHHHHHhhhcchhhhhhc
Confidence 666666666666666666666553333333
No 20
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.43 E-value=1.5e-13 Score=148.64 Aligned_cols=314 Identities=21% Similarity=0.222 Sum_probs=184.4
Q ss_pred eEEEecCcccccCCcccccccceEEEeecCC--cCCCCC--CCCCCCccEEEccCc-ccccccchhhccCCCccEEEecC
Q 037847 187 NFLVRAGVKLTEAPKVEEWEGAKRISLTANG--IGSLSE--IPTCPRLVTLLLDGN-RIEEITDGFFQSLSTLRVLSLRG 261 (542)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~--~~~~~~--~~~~~~L~~L~l~~~-~~~~~~~~~~~~l~~L~~L~l~~ 261 (542)
+.+.........++......+++.|-+..+. +..++. |..++.|++|++++| .+..+|.. ++.+-+||||++++
T Consensus 526 rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~-I~~Li~LryL~L~~ 604 (889)
T KOG4658|consen 526 RRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS-IGELVHLRYLDLSD 604 (889)
T ss_pred eEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH-HhhhhhhhcccccC
Confidence 3444444455555555555679999999886 566655 788999999999988 45566655 99999999999999
Q ss_pred CCCCCcCccccCCCCCCCEEeccCC-CCCcccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccc
Q 037847 262 NFPPSTLPSGISGLVSLHHLDLSST-DITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVI 340 (542)
Q Consensus 262 ~~~~~~lp~~i~~l~~L~~L~l~~~-~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~ 340 (542)
+ .+..+|.++++|..|.+||+..+ .+..+|.....|++|++|.+.... .......++.+.+|++|....+.....
T Consensus 605 t-~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~--~~~~~~~l~el~~Le~L~~ls~~~~s~- 680 (889)
T KOG4658|consen 605 T-GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA--LSNDKLLLKELENLEHLENLSITISSV- 680 (889)
T ss_pred C-CccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc--cccchhhHHhhhcccchhhheeecchh-
Confidence 9 89999999999999999999988 445566667779999999997763 111111234444555554433332211
Q ss_pred cCCCCccccCCCcchhHhhccccCCceeeeEec-chHHHHHhhcCchhhccceeEEeccccCCCCCcee-c--ccc-ccc
Q 037847 341 KGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFG-SSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNV-L--HLA-YME 415 (542)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~-~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~-~--~l~-~l~ 415 (542)
..+..+..+..|..+..... .................++.|.+..+......... . ... .++
T Consensus 681 -------------~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~ 747 (889)
T KOG4658|consen 681 -------------LLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFP 747 (889)
T ss_pred -------------HhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHH
Confidence 11111222222221111110 00111112222333455566666655542211100 0 011 134
Q ss_pred ccceeeecccCccceeeccchhhcccccccccccCEEEEccCCC--CCcchhhhccCcceEEEeccchhhhccccccccc
Q 037847 416 NLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRG--KDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDI 493 (542)
Q Consensus 416 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~--~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~ 493 (542)
++..+.+..|.....+.+ ....++|+.|.+..|.. ..++....+..++.+.+..+.+......
T Consensus 748 ~l~~~~~~~~~~~r~l~~---------~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~------ 812 (889)
T KOG4658|consen 748 NLSKVSILNCHMLRDLTW---------LLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRML------ 812 (889)
T ss_pred HHHHHHhhccccccccch---------hhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceee------
Confidence 555666656655442211 12368999999999988 5556667777777766655555544211
Q ss_pred ccccCCcCCCCCccceeecccCCcccccCCCC----CCCCCcceEeeccC
Q 037847 494 SEVIGSEHNFFPRLEYLTMWRGTNLKSVYPNP----QPFPKLKKIQAFHC 539 (542)
Q Consensus 494 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~----~~~p~L~~L~i~~C 539 (542)
.+.+.|+++..+.+... .+.++.... +.+|.+.++.+.+|
T Consensus 813 -----~~l~~l~~i~~~~l~~~-~l~~~~ve~~p~l~~~P~~~~~~i~~~ 856 (889)
T KOG4658|consen 813 -----CSLGGLPQLYWLPLSFL-KLEELIVEECPKLGKLPLLSTLTIVGC 856 (889)
T ss_pred -----ecCCCCceeEecccCcc-chhheehhcCcccccCccccccceecc
Confidence 14455555555555542 255444333 45788888888886
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.42 E-value=1e-14 Score=136.58 Aligned_cols=295 Identities=22% Similarity=0.218 Sum_probs=183.2
Q ss_pred EEEecCcccccCCcccccccceEEEeecCCcCCCCC--CCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCC
Q 037847 188 FLVRAGVKLTEAPKVEEWEGAKRISLTANGIGSLSE--IPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPP 265 (542)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 265 (542)
.+.-.+.++.++|.... .....+.+..|.|+.+|. |..+++||.|+++.|.++.+.+..|.+++.|..|-+.++..+
T Consensus 50 ~VdCr~~GL~eVP~~LP-~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI 128 (498)
T KOG4237|consen 50 IVDCRGKGLTEVPANLP-PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKI 128 (498)
T ss_pred eEEccCCCcccCcccCC-CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCch
Confidence 33334556666664332 456778888888888874 888888999999999888888888888888888877775478
Q ss_pred CcCccc-cCCCCCCCEEeccCCCCCccc-HHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCcccccc--cc
Q 037847 266 STLPSG-ISGLVSLHHLDLSSTDITGLP-QELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGV--IK 341 (542)
Q Consensus 266 ~~lp~~-i~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~--~~ 341 (542)
+++|+. |+.|..|+-|.+.-|.+.-++ ..+..|++|..|.+.+| .+..++.+.+..+.+++++.+..+.+.-. +|
T Consensus 129 ~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~ 207 (498)
T KOG4237|consen 129 TDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNPFICDCNLP 207 (498)
T ss_pred hhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCccccccccc
Confidence 888864 678888888888877777654 45788888888888888 67778876688888888888776652110 00
Q ss_pred CCCCccccCCCcchhHhhccccCCceeeeEecch--HHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccce
Q 037847 342 GKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSS--LAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQE 419 (542)
Q Consensus 342 ~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~--~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~ 419 (542)
... ......+.+.+..+-.....+..... ...+.+... +......+...+ ..........+..+++|++
T Consensus 208 wla-----~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~--~esl~s~~~~~d--~~d~~cP~~cf~~L~~L~~ 278 (498)
T KOG4237|consen 208 WLA-----DDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCS--LESLPSRLSSED--FPDSICPAKCFKKLPNLRK 278 (498)
T ss_pred hhh-----hHHhhchhhcccceecchHHHHHHHhcccchhhhhhh--HHhHHHhhcccc--CcCCcChHHHHhhcccceE
Confidence 000 00000000111111000000000000 000111000 000000111111 1112222334788999999
Q ss_pred eeecccCccceeeccchhhcccccccccccCEEEEccCCC--CCcchhhhccCcceEEEeccchhhhccccccccccccc
Q 037847 420 LELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRG--KDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVI 497 (542)
Q Consensus 420 L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~--~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~ 497 (542)
|++++|.++.+...++.. ...++.|.|..|++ ..-..+.++..|+.|+|++|+|+.+...
T Consensus 279 lnlsnN~i~~i~~~aFe~--------~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~---------- 340 (498)
T KOG4237|consen 279 LNLSNNKITRIEDGAFEG--------AAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPG---------- 340 (498)
T ss_pred eccCCCccchhhhhhhcc--------hhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecc----------
Confidence 999999999876666643 78899999999988 3333477899999999999999987542
Q ss_pred CCcCCCCCccceeecc
Q 037847 498 GSEHNFFPRLEYLTMW 513 (542)
Q Consensus 498 ~~~~~~~~~L~~L~l~ 513 (542)
.......|..|.+-
T Consensus 341 --aF~~~~~l~~l~l~ 354 (498)
T KOG4237|consen 341 --AFQTLFSLSTLNLL 354 (498)
T ss_pred --cccccceeeeeehc
Confidence 33445556666654
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.42 E-value=3e-15 Score=124.24 Aligned_cols=167 Identities=22% Similarity=0.301 Sum_probs=133.9
Q ss_pred cCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccCCCCCcccHHhhc
Q 037847 218 IGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKA 297 (542)
Q Consensus 218 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~ 297 (542)
+..++.+..+++.+.|.++.|.++..++. +..+.+|++|++.+| .++++|.+|+.++.|+.|+++.|++..+|.+++.
T Consensus 23 f~~~~gLf~~s~ITrLtLSHNKl~~vppn-ia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgmnrl~~lprgfgs 100 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLSHNKLTVVPPN-IAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMNRLNILPRGFGS 100 (264)
T ss_pred HhhcccccchhhhhhhhcccCceeecCCc-HHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecchhhhhcCccccCC
Confidence 34456677888889999999999988888 889999999999999 7999999999999999999999999999999999
Q ss_pred CCCCCEEeccCCccc-CccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCCceeeeEecchH
Q 037847 298 LEKLRYLNLDYAFHL-SIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSL 376 (542)
Q Consensus 298 l~~L~~L~l~~~~~~-~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~ 376 (542)
++.|+.||+..|+.- ..+|.. +-.|+.|+.|.+.+|.+. ..+.+.++|++|+.|.+.-++..
T Consensus 101 ~p~levldltynnl~e~~lpgn-ff~m~tlralyl~dndfe----------------~lp~dvg~lt~lqil~lrdndll 163 (264)
T KOG0617|consen 101 FPALEVLDLTYNNLNENSLPGN-FFYMTTLRALYLGDNDFE----------------ILPPDVGKLTNLQILSLRDNDLL 163 (264)
T ss_pred CchhhhhhccccccccccCCcc-hhHHHHHHHHHhcCCCcc----------------cCChhhhhhcceeEEeeccCchh
Confidence 999999999988433 357776 667889999999887653 34456778888888877754422
Q ss_pred HHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCccceee
Q 037847 377 AVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKI 432 (542)
Q Consensus 377 ~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 432 (542)
.. ...++.+..|++|+|.||.+..+|+
T Consensus 164 ~l-----------------------------pkeig~lt~lrelhiqgnrl~vlpp 190 (264)
T KOG0617|consen 164 SL-----------------------------PKEIGDLTRLRELHIQGNRLTVLPP 190 (264)
T ss_pred hC-----------------------------cHHHHHHHHHHHHhcccceeeecCh
Confidence 11 1235567888999999988877654
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.29 E-value=7.8e-13 Score=130.24 Aligned_cols=69 Identities=20% Similarity=0.194 Sum_probs=31.1
Q ss_pred cccccceeeecccCccceeeccchhhcccccccccccCEEEEccCCCC--Cc----chhhhccCcceEEEeccchhhh
Q 037847 413 YMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRGK--DL----TWLVFVQNLKQLNMQGFTMEEI 484 (542)
Q Consensus 413 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~~--~~----~~l~~l~~L~~L~L~~~~l~~~ 484 (542)
.+++|++|++++|.+....+..+.. ... ...+.|++|++++|.+. .. ..+..+++|+++++++|.+.+.
T Consensus 219 ~~~~L~~L~ls~n~l~~~~~~~l~~--~~~-~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 219 SLKSLEVLNLGDNNLTDAGAAALAS--ALL-SPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred ccCCCCEEecCCCcCchHHHHHHHH--HHh-ccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence 3456666666666554311111100 000 01356666666666551 11 1233345566666666555543
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.27 E-value=1.1e-12 Score=129.14 Aligned_cols=265 Identities=18% Similarity=0.115 Sum_probs=150.6
Q ss_pred CCCCCccEEEccCcccccc----cchhhccCCCccEEEecCCCCC------CcCccccCCCCCCCEEeccCCCCCc-ccH
Q 037847 225 PTCPRLVTLLLDGNRIEEI----TDGFFQSLSTLRVLSLRGNFPP------STLPSGISGLVSLHHLDLSSTDITG-LPQ 293 (542)
Q Consensus 225 ~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~------~~lp~~i~~l~~L~~L~l~~~~i~~-lp~ 293 (542)
..+.+|+.|.++++.++.. ....+...++|+.|+++++... ..++..+..+.+|++|++++|.+.. .+.
T Consensus 20 ~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 99 (319)
T cd00116 20 PKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCG 99 (319)
T ss_pred HHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHH
Confidence 4455678888888766322 1222556667888888777322 1223455667788888888877653 444
Q ss_pred HhhcCCC---CCEEeccCCcccC----ccchhhcCCC-CCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCC
Q 037847 294 ELKALEK---LRYLNLDYAFHLS----IIPHQLISCF-SKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHL 365 (542)
Q Consensus 294 ~i~~l~~---L~~L~l~~~~~~~----~lp~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 365 (542)
.+..+.+ |++|++++|.... .+... +..+ ++|+.|++++|.+.+. ........+..+++|
T Consensus 100 ~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~-l~~~~~~L~~L~L~~n~l~~~-----------~~~~~~~~~~~~~~L 167 (319)
T cd00116 100 VLESLLRSSSLQELKLNNNGLGDRGLRLLAKG-LKDLPPALEKLVLGRNRLEGA-----------SCEALAKALRANRDL 167 (319)
T ss_pred HHHHHhccCcccEEEeeCCccchHHHHHHHHH-HHhCCCCceEEEcCCCcCCch-----------HHHHHHHHHHhCCCc
Confidence 5555544 8888888774321 12222 4455 7788888887776421 111233445556667
Q ss_pred ceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccchhhccccccc
Q 037847 366 NVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNG 445 (542)
Q Consensus 366 ~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 445 (542)
+.|+++.+..... .+ ......+..+++|++|++++|.+.......+. .....
T Consensus 168 ~~L~l~~n~l~~~-~~-----------------------~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~----~~~~~ 219 (319)
T cd00116 168 KELNLANNGIGDA-GI-----------------------RALAEGLKANCNLEVLDLNNNGLTDEGASALA----ETLAS 219 (319)
T ss_pred CEEECcCCCCchH-HH-----------------------HHHHHHHHhCCCCCEEeccCCccChHHHHHHH----HHhcc
Confidence 7766665432110 00 00011233456899999999987643221111 01234
Q ss_pred ccccCEEEEccCCCC--Ccchhh-h----ccCcceEEEeccchhhhcccccccccccccCCcCCCCCccceeecccCCcc
Q 037847 446 FRNLNTVVLRSCRGK--DLTWLV-F----VQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNL 518 (542)
Q Consensus 446 l~~L~~L~L~~c~~~--~~~~l~-~----l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l 518 (542)
+++|+.|++++|... .+..+. . .+.|++|++++|.+++..... . ......+++|+.+++.++. +
T Consensus 220 ~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~-l-------~~~~~~~~~L~~l~l~~N~-l 290 (319)
T cd00116 220 LKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKD-L-------AEVLAEKESLLELDLRGNK-F 290 (319)
T ss_pred cCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHH-H-------HHHHhcCCCccEEECCCCC-C
Confidence 688999999999872 333332 2 379999999998876322110 0 0133446889999998854 3
Q ss_pred cc-----cCCCCCCC-CCcceEeecc
Q 037847 519 KS-----VYPNPQPF-PKLKKIQAFH 538 (542)
Q Consensus 519 ~~-----~~~~~~~~-p~L~~L~i~~ 538 (542)
.. +......+ +.|+.++|.+
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (319)
T cd00116 291 GEEGAQLLAESLLEPGNELESLWVKD 316 (319)
T ss_pred cHHHHHHHHHHHhhcCCchhhcccCC
Confidence 32 22222234 6777777754
No 25
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.24 E-value=3.3e-13 Score=126.56 Aligned_cols=285 Identities=20% Similarity=0.210 Sum_probs=176.3
Q ss_pred ecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccC-CCCCccc
Q 037847 214 TANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSS-TDITGLP 292 (542)
Q Consensus 214 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~-~~i~~lp 292 (542)
++..+..+|.-. -+.-..+.+..|+++.+|+..|+.+++||.|||++|....--|+.|..+..|-.|-+.+ |+|+.+|
T Consensus 54 r~~GL~eVP~~L-P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~ 132 (498)
T KOG4237|consen 54 RGKGLTEVPANL-PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLP 132 (498)
T ss_pred cCCCcccCcccC-CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhh
Confidence 344455555311 13456789999999999999999999999999999944444588899999998888777 8999999
Q ss_pred HH-hhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCCceeeeE
Q 037847 293 QE-LKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWS 371 (542)
Q Consensus 293 ~~-i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~ 371 (542)
+. ++.|..|+.|.+.-| .+..++.+++..|++|+.|.+.+|.+... +. ..+..+..++.+.+.
T Consensus 133 k~~F~gL~slqrLllNan-~i~Cir~~al~dL~~l~lLslyDn~~q~i-~~--------------~tf~~l~~i~tlhlA 196 (498)
T KOG4237|consen 133 KGAFGGLSSLQRLLLNAN-HINCIRQDALRDLPSLSLLSLYDNKIQSI-CK--------------GTFQGLAAIKTLHLA 196 (498)
T ss_pred hhHhhhHHHHHHHhcChh-hhcchhHHHHHHhhhcchhcccchhhhhh-cc--------------ccccchhccchHhhh
Confidence 76 788999999999888 67788888899999999999988875321 10 123444455554444
Q ss_pred ecchH------HHHHhhcC----chhhccceeEEeccccCCCCCceec-ccccccccceeeecccCccc-eeeccchhhc
Q 037847 372 FGSSL------AVQKFLKY----PKLVSITQSVWVECGTYTRPPFNVL-HLAYMENLQELELESCNLEE-MKIDSTEEVK 439 (542)
Q Consensus 372 ~~~~~------~~~~l~~~----~~~~~~l~~l~l~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~~ 439 (542)
-+... .......+ .....+.....+..... ...... .....+.+.+--.+.|.... .|...
T Consensus 197 ~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri--~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~c----- 269 (498)
T KOG4237|consen 197 QNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRI--NQEDARKFLCSLESLPSRLSSEDFPDSICPAKC----- 269 (498)
T ss_pred cCccccccccchhhhHHhhchhhcccceecchHHHHHHHh--cccchhhhhhhHHhHHHhhccccCcCCcChHHH-----
Confidence 33211 11100000 00000000000000000 000000 00001111110111111111 11111
Q ss_pred ccccccccccCEEEEccCCC--CCcchhhhccCcceEEEeccchhhhcccccccccccccCCcCCCCCccceeecccCCc
Q 037847 440 KLFRNGFRNLNTVVLRSCRG--KDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTN 517 (542)
Q Consensus 440 ~~~~~~l~~L~~L~L~~c~~--~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 517 (542)
...+++|++|+|++|++ ....++..+.++++|.|.+|+++.+.. ....++..|+.|++.+. +
T Consensus 270 ---f~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~------------~~f~~ls~L~tL~L~~N-~ 333 (498)
T KOG4237|consen 270 ---FKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSS------------GMFQGLSGLKTLSLYDN-Q 333 (498)
T ss_pred ---HhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHH------------HhhhccccceeeeecCC-e
Confidence 24489999999999999 445578899999999999999998754 25667889999999994 6
Q ss_pred ccccCCC-CCCCCCcceEeecc
Q 037847 518 LKSVYPN-PQPFPKLKKIQAFH 538 (542)
Q Consensus 518 l~~~~~~-~~~~p~L~~L~i~~ 538 (542)
++.+.++ .....+|.+|++..
T Consensus 334 it~~~~~aF~~~~~l~~l~l~~ 355 (498)
T KOG4237|consen 334 ITTVAPGAFQTLFSLSTLNLLS 355 (498)
T ss_pred eEEEecccccccceeeeeehcc
Confidence 7765443 33456677776643
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.17 E-value=4.7e-11 Score=103.90 Aligned_cols=141 Identities=31% Similarity=0.385 Sum_probs=53.7
Q ss_pred cCCcCCCCCCCCCCCccEEEccCcccccccchhhc-cCCCccEEEecCCCCCCcCccccCCCCCCCEEeccCCCCCcccH
Q 037847 215 ANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQ-SLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQ 293 (542)
Q Consensus 215 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~ 293 (542)
.+.|...+.+.+..+++.|++.+|.++.+.. ++ .+.+|++|++++| .+..++ .+..+.+|++|++++|.|+.++.
T Consensus 6 ~~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~--L~~~l~~L~~L~Ls~N-~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~ 81 (175)
T PF14580_consen 6 ANMIEQIAQYNNPVKLRELNLRGNQISTIEN--LGATLDKLEVLDLSNN-QITKLE-GLPGLPRLKTLDLSNNRISSISE 81 (175)
T ss_dssp ------------------------------S----TT-TT--EEE-TTS---S--T-T----TT--EEE--SS---S-CH
T ss_pred ccccccccccccccccccccccccccccccc--hhhhhcCCCEEECCCC-CCcccc-CccChhhhhhcccCCCCCCcccc
Confidence 3455666667777788999999998877654 54 5788999999999 777776 68889999999999999999876
Q ss_pred Hh-hcCCCCCEEeccCCcccCccch-hhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCCceeeeE
Q 037847 294 EL-KALEKLRYLNLDYAFHLSIIPH-QLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWS 371 (542)
Q Consensus 294 ~i-~~l~~L~~L~l~~~~~~~~lp~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~ 371 (542)
.+ ..+++|++|++++| .+..+.. ..+..+++|+.|++.+|++.. ....-..-+..+++|+.||-.
T Consensus 82 ~l~~~lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv~~------------~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 82 GLDKNLPNLQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNPVCE------------KKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp HHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGG------------STTHHHHHHHH-TT-SEETTE
T ss_pred chHHhCCcCCEEECcCC-cCCChHHhHHHHcCCCcceeeccCCcccc------------hhhHHHHHHHHcChhheeCCE
Confidence 66 46899999999998 4443321 226778999999999998753 233444556677778877765
Q ss_pred e
Q 037847 372 F 372 (542)
Q Consensus 372 ~ 372 (542)
-
T Consensus 149 ~ 149 (175)
T PF14580_consen 149 D 149 (175)
T ss_dssp E
T ss_pred E
Confidence 3
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=1.3e-10 Score=110.92 Aligned_cols=205 Identities=21% Similarity=0.179 Sum_probs=121.2
Q ss_pred ccCCCccEEEecCCCCCCcCcc--ccCCCCCCCEEeccCCCCCc---ccHHhhcCCCCCEEeccCCcccCccchhhcCCC
Q 037847 249 QSLSTLRVLSLRGNFPPSTLPS--GISGLVSLHHLDLSSTDITG---LPQELKALEKLRYLNLDYAFHLSIIPHQLISCF 323 (542)
Q Consensus 249 ~~l~~L~~L~l~~~~~~~~lp~--~i~~l~~L~~L~l~~~~i~~---lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l 323 (542)
+++++|+...|+++ .+...+. ....|++++.|||++|-+.. +-.-+..|++|+.|+++.|..........-..+
T Consensus 118 sn~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCc-cccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 34566677777666 4444442 44567777777777774444 334456777888888877733222222112345
Q ss_pred CCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCCceeeeEecchHHHHHhhcCchhhccceeEEeccccCCC
Q 037847 324 SKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTR 403 (542)
Q Consensus 324 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~ 403 (542)
+.|+.|.+++|.+... ....-+...++|..|.+..+......
T Consensus 197 ~~lK~L~l~~CGls~k--------------~V~~~~~~fPsl~~L~L~~N~~~~~~------------------------ 238 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWK--------------DVQWILLTFPSLEVLYLEANEIILIK------------------------ 238 (505)
T ss_pred hhhheEEeccCCCCHH--------------HHHHHHHhCCcHHHhhhhccccccee------------------------
Confidence 6777788888776421 12222334455555555544211000
Q ss_pred CCceecccccccccceeeecccCccceeeccchhhcccccccccccCEEEEccCCC---CCcch-----hhhccCcceEE
Q 037847 404 PPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRG---KDLTW-----LVFVQNLKQLN 475 (542)
Q Consensus 404 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~---~~~~~-----l~~l~~L~~L~ 475 (542)
.....-+..|++|+|++|++..++-. .-...|+.|+.|.++.|.+ ..++. ...+|+|++|+
T Consensus 239 ----~~~~~i~~~L~~LdLs~N~li~~~~~-------~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~ 307 (505)
T KOG3207|consen 239 ----ATSTKILQTLQELDLSNNNLIDFDQG-------YKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLN 307 (505)
T ss_pred ----cchhhhhhHHhhccccCCcccccccc-------cccccccchhhhhccccCcchhcCCCccchhhhcccccceeee
Confidence 01122356788899999888764321 1124588899999988887 22222 34688999999
Q ss_pred EeccchhhhcccccccccccccCCcCCCCCccceeeccc
Q 037847 476 MQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWR 514 (542)
Q Consensus 476 L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 514 (542)
+..|++.++... ......++|+.|.+..
T Consensus 308 i~~N~I~~w~sl-----------~~l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 308 ISENNIRDWRSL-----------NHLRTLENLKHLRITL 335 (505)
T ss_pred cccCcccccccc-----------chhhccchhhhhhccc
Confidence 999888777542 2555677777777644
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.96 E-value=2.1e-10 Score=104.13 Aligned_cols=88 Identities=25% Similarity=0.205 Sum_probs=71.1
Q ss_pred ccccccccceeeecccCccceeeccchhhcccccccccccCEEEEccCCCCCcchhhhccCcceEEEeccchhhhccccc
Q 037847 410 HLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVEK 489 (542)
Q Consensus 410 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~ 489 (542)
++..+++|+.|++++|.+.++.-.. ..+.|.++|.|+.|.++.+..++.+-+|..|++++|+|+++...
T Consensus 324 nLa~L~~L~~LDLS~N~Ls~~~Gwh---------~KLGNIKtL~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV-- 392 (490)
T KOG1259|consen 324 NLAELPQLQLLDLSGNLLAECVGWH---------LKLGNIKTLKLAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEV-- 392 (490)
T ss_pred hhhhcccceEeecccchhHhhhhhH---------hhhcCEeeeehhhhhHhhhhhhHhhhhheeccccccchhhHHHh--
Confidence 3556788999999998887642211 23789999999999998888999999999999999999988652
Q ss_pred ccccccccCCcCCCCCccceeecccCCc
Q 037847 490 LSDISEVIGSEHNFFPRLEYLTMWRGTN 517 (542)
Q Consensus 490 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 517 (542)
..++.+|.|++|.+.+.|-
T Consensus 393 ---------~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 393 ---------NHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred ---------cccccccHHHHHhhcCCCc
Confidence 3788899999999988763
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.94 E-value=6e-10 Score=97.05 Aligned_cols=131 Identities=26% Similarity=0.330 Sum_probs=54.6
Q ss_pred CcccccccceEEEeecCCcCCCCCCC-CCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCcccc-CCCCC
Q 037847 200 PKVEEWEGAKRISLTANGIGSLSEIP-TCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGI-SGLVS 277 (542)
Q Consensus 200 ~~~~~~~~l~~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i-~~l~~ 277 (542)
+......+.+.|++.++.|..+..+. .+.+|+.|++++|.++.+.. +..+++|++|++++| .+..++..+ ..+++
T Consensus 13 ~~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~ 89 (175)
T PF14580_consen 13 AQYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNN-RISSISEGLDKNLPN 89 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S--TT------TT--EEE--SS----S-CHHHHHH-TT
T ss_pred cccccccccccccccccccccccchhhhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCC-CCCccccchHHhCCc
Confidence 33444467899999999999887776 68899999999999988765 788999999999999 677776555 36899
Q ss_pred CCEEeccCCCCCccc--HHhhcCCCCCEEeccCCcccCc--cchhhcCCCCCCcEEeccC
Q 037847 278 LHHLDLSSTDITGLP--QELKALEKLRYLNLDYAFHLSI--IPHQLISCFSKLEVLRLCG 333 (542)
Q Consensus 278 L~~L~l~~~~i~~lp--~~i~~l~~L~~L~l~~~~~~~~--lp~~~~~~l~~L~~L~l~~ 333 (542)
|++|++++|.|.++- ..+..+++|+.|++.+|..... ....++..+++|+.|+-..
T Consensus 90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 999999999887743 4577899999999999954321 2234577899999998654
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.77 E-value=2.7e-10 Score=112.15 Aligned_cols=123 Identities=28% Similarity=0.370 Sum_probs=63.0
Q ss_pred eEEEeecCCcCCCCC-CCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccCCC
Q 037847 209 KRISLTANGIGSLSE-IPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTD 287 (542)
Q Consensus 209 ~~l~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~ 287 (542)
...+++.|.+..+|. ...|..|..+.+..|.+..++.. ++.+..|++|+|+.| .+..+|..++.|+ |+.|-+++|+
T Consensus 78 ~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~-i~~L~~lt~l~ls~N-qlS~lp~~lC~lp-Lkvli~sNNk 154 (722)
T KOG0532|consen 78 VFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEA-ICNLEALTFLDLSSN-QLSHLPDGLCDLP-LKVLIVSNNK 154 (722)
T ss_pred hhhhccccccccCchHHHHHHHHHHHHHHhccceecchh-hhhhhHHHHhhhccc-hhhcCChhhhcCc-ceeEEEecCc
Confidence 334444444444442 33444455555555555444433 455555555555555 4555555554443 5555555555
Q ss_pred CCcccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccc
Q 037847 288 ITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGR 336 (542)
Q Consensus 288 i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~ 336 (542)
++.+|..++-+..|.+|+.+.| .+..+|.. ++.+.+|+.|.+..|..
T Consensus 155 l~~lp~~ig~~~tl~~ld~s~n-ei~slpsq-l~~l~slr~l~vrRn~l 201 (722)
T KOG0532|consen 155 LTSLPEEIGLLPTLAHLDVSKN-EIQSLPSQ-LGYLTSLRDLNVRRNHL 201 (722)
T ss_pred cccCCcccccchhHHHhhhhhh-hhhhchHH-hhhHHHHHHHHHhhhhh
Confidence 5555555555555555555555 34445544 45555555555555443
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.75 E-value=8.8e-09 Score=104.51 Aligned_cols=106 Identities=35% Similarity=0.455 Sum_probs=54.1
Q ss_pred CCCCCccEEEccCcccccccchhhccCC-CccEEEecCCCCCCcCccccCCCCCCCEEeccCCCCCcccHHhhcCCCCCE
Q 037847 225 PTCPRLVTLLLDGNRIEEITDGFFQSLS-TLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRY 303 (542)
Q Consensus 225 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~ 303 (542)
...+.+..|.+.++.+..+++. ...+. +|+.|+++++ .+..+|..++.+++|+.|++++|.+..+|...+.+++|+.
T Consensus 113 ~~~~~l~~L~l~~n~i~~i~~~-~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~ 190 (394)
T COG4886 113 LELTNLTSLDLDNNNITDIPPL-IGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNN 190 (394)
T ss_pred hcccceeEEecCCcccccCccc-cccchhhccccccccc-chhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhh
Confidence 3344555555555555555443 23332 5555555555 4555544455555555555555555555555545555555
Q ss_pred EeccCCcccCccchhhcCCCCCCcEEeccCc
Q 037847 304 LNLDYAFHLSIIPHQLISCFSKLEVLRLCGC 334 (542)
Q Consensus 304 L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~ 334 (542)
|++++| .+..+|.. ++.+..|++|.+.+|
T Consensus 191 L~ls~N-~i~~l~~~-~~~~~~L~~l~~~~N 219 (394)
T COG4886 191 LDLSGN-KISDLPPE-IELLSALEELDLSNN 219 (394)
T ss_pred eeccCC-ccccCchh-hhhhhhhhhhhhcCC
Confidence 555555 44555542 233444555555544
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=3.6e-09 Score=101.20 Aligned_cols=133 Identities=20% Similarity=0.148 Sum_probs=88.6
Q ss_pred ccccceEEEeecCCcCCCC---CCCCCCCccEEEccCccccccc--chhhccCCCccEEEecCCCCCCcCccc-cCCCCC
Q 037847 204 EWEGAKRISLTANGIGSLS---EIPTCPRLVTLLLDGNRIEEIT--DGFFQSLSTLRVLSLRGNFPPSTLPSG-ISGLVS 277 (542)
Q Consensus 204 ~~~~l~~l~l~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~lp~~-i~~l~~ 277 (542)
.+++++.+++.+......+ ....|++++.|++++|-+.... ..+...+++|+.|+++.|+......+. -..+.+
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 4567888888888776665 3667889999999998554322 234667899999999988432211111 135778
Q ss_pred CCEEeccCCCCCc--ccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCcccc
Q 037847 278 LHHLDLSSTDITG--LPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRF 337 (542)
Q Consensus 278 L~~L~l~~~~i~~--lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~ 337 (542)
|+.|.++.|+++. +-.....+++|+.|++..|..+..-... ..-++.|++|++++|.+.
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~-~~i~~~L~~LdLs~N~li 259 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS-TKILQTLQELDLSNNNLI 259 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch-hhhhhHHhhccccCCccc
Confidence 8889999988874 3344557788888888888422211111 234667888888888764
No 33
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=6.7e-10 Score=100.92 Aligned_cols=110 Identities=22% Similarity=0.247 Sum_probs=60.7
Q ss_pred ccccccceeeecccCccceeeccchhhcccccccccccCEEEEccCCC----CCcchh-hhccCcceEEEec-cchhhhc
Q 037847 412 AYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRG----KDLTWL-VFVQNLKQLNMQG-FTMEEII 485 (542)
Q Consensus 412 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~----~~~~~l-~~l~~L~~L~L~~-~~l~~~~ 485 (542)
..++.|.+|+++||......+.. +...--++|+.|+|++|.. ..+..+ ...|+|.+|+|++ +.++.-.
T Consensus 257 ~scs~L~~LNlsWc~l~~~~Vtv------~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~ 330 (419)
T KOG2120|consen 257 SSCSRLDELNLSWCFLFTEKVTV------AVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDC 330 (419)
T ss_pred HhhhhHhhcCchHhhccchhhhH------HHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchH
Confidence 34566666666666655411110 1111235667777777654 222222 3567777777777 5554422
Q ss_pred ccccccccccccCCcCCCCCccceeecccCCcccc-cCCCCCCCCCcceEeeccC
Q 037847 486 SVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLKS-VYPNPQPFPKLKKIQAFHC 539 (542)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~-~~~~~~~~p~L~~L~i~~C 539 (542)
. ...-.|+.|++|.++.|..+.- --.....+|+|.+|++.+|
T Consensus 331 ~------------~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 331 F------------QEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred H------------HHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 1 1334577777777777765431 1123456777788877776
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.65 E-value=8.7e-09 Score=93.84 Aligned_cols=125 Identities=21% Similarity=0.291 Sum_probs=57.2
Q ss_pred cccceEEEeecCCcCCCCCC-CCCCCccEEEccCcccccccchhhccCCCccEEEecCC---CCCCcCccccCCCCCCCE
Q 037847 205 WEGAKRISLTANGIGSLSEI-PTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGN---FPPSTLPSGISGLVSLHH 280 (542)
Q Consensus 205 ~~~l~~l~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~---~~~~~lp~~i~~l~~L~~ 280 (542)
++++..+-++.++-..+-.+ ..-+.|.++.+....+...+. +-.+..+. |..+. ......-..+..++.|.+
T Consensus 213 f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~--l~pe~~~~--D~~~~E~~t~~G~~~~~~dTWq~Lte 288 (490)
T KOG1259|consen 213 FRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPS--LLPETILA--DPSGSEPSTSNGSALVSADTWQELTE 288 (490)
T ss_pred hhhhheeeeeccchhheeceeecCchhheeeeeccccccccc--ccchhhhc--CccCCCCCccCCceEEecchHhhhhh
Confidence 45566666666655544332 234566777666553322211 11111111 11111 001111122334455556
Q ss_pred EeccCCCCCcccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccc
Q 037847 281 LDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGR 336 (542)
Q Consensus 281 L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~ 336 (542)
+|+++|.|+.+.+++.-+++++.|++++| .+..+.. +..+++|++|++++|.+
T Consensus 289 lDLS~N~I~~iDESvKL~Pkir~L~lS~N-~i~~v~n--La~L~~L~~LDLS~N~L 341 (490)
T KOG1259|consen 289 LDLSGNLITQIDESVKLAPKLRRLILSQN-RIRTVQN--LAELPQLQLLDLSGNLL 341 (490)
T ss_pred ccccccchhhhhhhhhhccceeEEecccc-ceeeehh--hhhcccceEeecccchh
Confidence 66666655555555555566666666655 3333332 44555566666655544
No 35
>PLN03150 hypothetical protein; Provisional
Probab=98.57 E-value=2e-07 Score=99.30 Aligned_cols=108 Identities=23% Similarity=0.334 Sum_probs=83.1
Q ss_pred CccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccCCCCCc-ccHHhhcCCCCCEEecc
Q 037847 229 RLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITG-LPQELKALEKLRYLNLD 307 (542)
Q Consensus 229 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~-lp~~i~~l~~L~~L~l~ 307 (542)
.++.|++++|.+....+..++.+++|+.|+|++|.....+|..++.+.+|++|++++|.+.. +|..++++++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 46778888888776555558888888888888885556888888888888888888888874 78888888888888888
Q ss_pred CCcccCccchhhcCC-CCCCcEEeccCcccc
Q 037847 308 YAFHLSIIPHQLISC-FSKLEVLRLCGCGRF 337 (542)
Q Consensus 308 ~~~~~~~lp~~~~~~-l~~L~~L~l~~~~~~ 337 (542)
+|.....+|.. ++. +.++..+++.+|...
T Consensus 499 ~N~l~g~iP~~-l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 499 GNSLSGRVPAA-LGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CCcccccCChH-HhhccccCceEEecCCccc
Confidence 88666678876 443 346677777777543
No 36
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.56 E-value=6.7e-08 Score=98.08 Aligned_cols=131 Identities=28% Similarity=0.359 Sum_probs=110.0
Q ss_pred ccccccceEEEeecCCcCCCCCCCCCC--CccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCC
Q 037847 202 VEEWEGAKRISLTANGIGSLSEIPTCP--RLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLH 279 (542)
Q Consensus 202 ~~~~~~l~~l~l~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~ 279 (542)
......+..+.+.++.+..++...... +|+.|++++|.+..++.. +..+++|+.|++++| .+.++|...+.+..|+
T Consensus 112 ~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~-~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~ 189 (394)
T COG4886 112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSP-LRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLN 189 (394)
T ss_pred hhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhh-hhccccccccccCCc-hhhhhhhhhhhhhhhh
Confidence 344467899999999999998755554 899999999999887533 789999999999999 8999998877999999
Q ss_pred EEeccCCCCCcccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccc
Q 037847 280 HLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGR 336 (542)
Q Consensus 280 ~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~ 336 (542)
.|++++|.++.+|..+..+.+|++|.+++|. ....+.. +.+++++..+.+.+++.
T Consensus 190 ~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~-~~~~~~l~~l~l~~n~~ 244 (394)
T COG4886 190 NLDLSGNKISDLPPEIELLSALEELDLSNNS-IIELLSS-LSNLKNLSGLELSNNKL 244 (394)
T ss_pred heeccCCccccCchhhhhhhhhhhhhhcCCc-ceecchh-hhhcccccccccCCcee
Confidence 9999999999999998888899999999984 3344443 78888888888777664
No 37
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.53 E-value=5.9e-09 Score=99.22 Aligned_cols=286 Identities=22% Similarity=0.177 Sum_probs=163.4
Q ss_pred CCccEEEccCcccccc--cchhhccCCCccEEEecCCCCCCcC-cccc-CCCCCCCEEeccCC-CCCc--ccHHhhcCCC
Q 037847 228 PRLVTLLLDGNRIEEI--TDGFFQSLSTLRVLSLRGNFPPSTL-PSGI-SGLVSLHHLDLSST-DITG--LPQELKALEK 300 (542)
Q Consensus 228 ~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~l-p~~i-~~l~~L~~L~l~~~-~i~~--lp~~i~~l~~ 300 (542)
..|+.|.+.|+.-... ...+-..++++..|.+.+|..+++- -.++ ..+..|+++++..| .++. +-.....+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 3567778887732211 1233457788888888888654421 1122 35778888888876 5655 3233456788
Q ss_pred CCEEeccCCcccCcc-chhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCCceeeeEecchHHHH
Q 037847 301 LRYLNLDYAFHLSII-PHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQ 379 (542)
Q Consensus 301 L~~L~l~~~~~~~~l-p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~ 379 (542)
|+++++++|..+..- ......+.+.++.+...||.-.+. ......=.....+..+++.-+.....+
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~l-------------e~l~~~~~~~~~i~~lnl~~c~~lTD~ 284 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELEL-------------EALLKAAAYCLEILKLNLQHCNQLTDE 284 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccH-------------HHHHHHhccChHhhccchhhhccccch
Confidence 888888888655430 011244455666666666653210 011111112222333443333333344
Q ss_pred HhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCccc-eeeccchhhcccccccccccCEEEEccCC
Q 037847 380 KFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEE-MKIDSTEEVKKLFRNGFRNLNTVVLRSCR 458 (542)
Q Consensus 380 ~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~~~l~~L~~L~L~~c~ 458 (542)
.+.........++.+...++....+.....--....+|+.|.+++|...+ ..... -..+.+.|+.+++..|.
T Consensus 285 ~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~-------l~rn~~~Le~l~~e~~~ 357 (483)
T KOG4341|consen 285 DLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTM-------LGRNCPHLERLDLEECG 357 (483)
T ss_pred HHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhh-------hhcCChhhhhhcccccc
Confidence 44444444455566666666542222222223356889999998887432 11111 12457889999999888
Q ss_pred C-CC--cchhh-hccCcceEEEec-cchhhhcccccccccccccCCcCCCCCccceeecccCCcccccCC-CCCCCCCcc
Q 037847 459 G-KD--LTWLV-FVQNLKQLNMQG-FTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLKSVYP-NPQPFPKLK 532 (542)
Q Consensus 459 ~-~~--~~~l~-~l~~L~~L~L~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~p~L~ 532 (542)
. .+ +..++ +.|.|+.|.|++ ..+++... ..+. +...+...|+.+.+.+||.+.+-.- ....+++|+
T Consensus 358 ~~~d~tL~sls~~C~~lr~lslshce~itD~gi-~~l~-------~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Le 429 (483)
T KOG4341|consen 358 LITDGTLASLSRNCPRLRVLSLSHCELITDEGI-RHLS-------SSSCSLEGLEVLELDNCPLITDATLEHLSICRNLE 429 (483)
T ss_pred eehhhhHhhhccCCchhccCChhhhhhhhhhhh-hhhh-------hccccccccceeeecCCCCchHHHHHHHhhCcccc
Confidence 7 22 22232 678999999998 45554411 1111 2445678899999999998766432 234578999
Q ss_pred eEeeccCCC
Q 037847 533 KIQAFHCRQ 541 (542)
Q Consensus 533 ~L~i~~C~~ 541 (542)
.+++.+|..
T Consensus 430 ri~l~~~q~ 438 (483)
T KOG4341|consen 430 RIELIDCQD 438 (483)
T ss_pred eeeeechhh
Confidence 999988864
No 38
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.49 E-value=1.6e-08 Score=94.17 Aligned_cols=139 Identities=22% Similarity=0.218 Sum_probs=73.8
Q ss_pred CCCCCCccEEEccCccccc----ccchhhccCCCccEEEecCCC---CCCcCccc-------cCCCCCCCEEeccCCCCC
Q 037847 224 IPTCPRLVTLLLDGNRIEE----ITDGFFQSLSTLRVLSLRGNF---PPSTLPSG-------ISGLVSLHHLDLSSTDIT 289 (542)
Q Consensus 224 ~~~~~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~---~~~~lp~~-------i~~l~~L~~L~l~~~~i~ 289 (542)
...+..++.++++||.+.. .....+...+.|+..++++-. ...++|+. +-.+++|+++|||.|.+.
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 4455666777777775532 122335566677777776641 12233332 334557778888777443
Q ss_pred c-----ccHHhhcCCCCCEEeccCCcccCccchhh-------------cCCCCCCcEEeccCccccccccCCCCccccCC
Q 037847 290 G-----LPQELKALEKLRYLNLDYAFHLSIIPHQL-------------ISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDG 351 (542)
Q Consensus 290 ~-----lp~~i~~l~~L~~L~l~~~~~~~~lp~~~-------------~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 351 (542)
. +-.-+.++..|++|.+.+| -+....... +..-+.||.+...+|.... ..
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen-----------~g 173 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN-----------GG 173 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc-----------cc
Confidence 2 2344667778888888777 332221111 2334567777666554321 11
Q ss_pred CcchhHhhccccCCceeeeEecc
Q 037847 352 AEPLMKELLGLKHLNVLSWSFGS 374 (542)
Q Consensus 352 ~~~~~~~l~~L~~L~~l~~~~~~ 374 (542)
....-..++..+.|+.+.+..++
T Consensus 174 a~~~A~~~~~~~~leevr~~qN~ 196 (382)
T KOG1909|consen 174 ATALAEAFQSHPTLEEVRLSQNG 196 (382)
T ss_pred HHHHHHHHHhccccceEEEeccc
Confidence 11233344555666666666554
No 39
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.49 E-value=1.7e-08 Score=99.81 Aligned_cols=131 Identities=24% Similarity=0.329 Sum_probs=93.3
Q ss_pred ccccccceEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEE
Q 037847 202 VEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHL 281 (542)
Q Consensus 202 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L 281 (542)
+..+..+..++++.|.+..+|.-.-.--|+.|.+++|+++.+|.. ++....|..||.+.| .+..+|..++++..|+.|
T Consensus 117 i~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNNkl~~lp~~-ig~~~tl~~ld~s~n-ei~slpsql~~l~slr~l 194 (722)
T KOG0532|consen 117 ICNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNNKLTSLPEE-IGLLPTLAHLDVSKN-EIQSLPSQLGYLTSLRDL 194 (722)
T ss_pred hhhhhHHHHhhhccchhhcCChhhhcCcceeEEEecCccccCCcc-cccchhHHHhhhhhh-hhhhchHHhhhHHHHHHH
Confidence 344455666777777777665422223367777777777777666 667777777777777 677777777777888888
Q ss_pred eccCCCCCcccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCcccc
Q 037847 282 DLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRF 337 (542)
Q Consensus 282 ~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~ 337 (542)
++++|.+..+|+.+.. -.|..||++.| ++..+|.. +.+|+.|++|-+.+|.+.
T Consensus 195 ~vrRn~l~~lp~El~~-LpLi~lDfScN-kis~iPv~-fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 195 NVRRNHLEDLPEELCS-LPLIRLDFSCN-KISYLPVD-FRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred HHhhhhhhhCCHHHhC-CceeeeecccC-ceeecchh-hhhhhhheeeeeccCCCC
Confidence 8877777777777773 35777887777 67778876 778888888888777764
No 40
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.46 E-value=5.3e-09 Score=99.56 Aligned_cols=294 Identities=18% Similarity=0.187 Sum_probs=175.9
Q ss_pred ccceEEEeecCCcCCCCC----CCCCCCccEEEccCcc-cccc-cchhhccCCCccEEEecCCCCCCcC--ccccCCCCC
Q 037847 206 EGAKRISLTANGIGSLSE----IPTCPRLVTLLLDGNR-IEEI-TDGFFQSLSTLRVLSLRGNFPPSTL--PSGISGLVS 277 (542)
Q Consensus 206 ~~l~~l~l~~~~~~~~~~----~~~~~~L~~L~l~~~~-~~~~-~~~~~~~l~~L~~L~l~~~~~~~~l--p~~i~~l~~ 277 (542)
..++.+++.+..-..... -..+++++.|.+.++. +++. ...+-..+.+|++|++..|..++.. -.....+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 345667777664333221 3578888888888873 3221 1222346889999999998555532 112346788
Q ss_pred CCEEeccCC-CCCc--ccHHhhcCCCCCEEeccCCcccCccchhhcC----CCCCCcEEeccCccccccccCCCCccccC
Q 037847 278 LHHLDLSST-DITG--LPQELKALEKLRYLNLDYAFHLSIIPHQLIS----CFSKLEVLRLCGCGRFGVIKGKEGNVLCD 350 (542)
Q Consensus 278 L~~L~l~~~-~i~~--lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~----~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 350 (542)
|.||+++.| .|++ +-.-...+++|+.+.+.+|.. .+...+. ....+-.+++..|....
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e---~~le~l~~~~~~~~~i~~lnl~~c~~lT------------ 282 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLE---LELEALLKAAAYCLEILKLNLQHCNQLT------------ 282 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhccccc---ccHHHHHHHhccChHhhccchhhhcccc------------
Confidence 999999988 5554 333455666777887777732 2222222 23335555655664332
Q ss_pred CCcchhHhhccccCCceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceeccc-ccccccceeeecccCccc
Q 037847 351 GAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHL-AYMENLQELELESCNLEE 429 (542)
Q Consensus 351 ~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~ 429 (542)
......--..+..|+.+..+.+.......+.....-...++.+.+..+.. .....+..+ .+.+.|+.+++.+|....
T Consensus 283 -D~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~-fsd~~ft~l~rn~~~Le~l~~e~~~~~~ 360 (483)
T KOG4341|consen 283 -DEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQ-FSDRGFTMLGRNCPHLERLDLEECGLIT 360 (483)
T ss_pred -chHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccch-hhhhhhhhhhcCChhhhhhcccccceeh
Confidence 11122222356678888888776655555555555567777777777663 111112222 246789999998886654
Q ss_pred ee-eccchhhcccccccccccCEEEEccCCC-CCc--ch----hhhccCcceEEEec-cchhhhcccccccccccccCCc
Q 037847 430 MK-IDSTEEVKKLFRNGFRNLNTVVLRSCRG-KDL--TW----LVFVQNLKQLNMQG-FTMEEIISVEKLSDISEVIGSE 500 (542)
Q Consensus 430 ~~-~~~~~~~~~~~~~~l~~L~~L~L~~c~~-~~~--~~----l~~l~~L~~L~L~~-~~l~~~~~~~~~~~~~~~~~~~ 500 (542)
.. +. -...+++.|+++.++.|.. .+- .. -..+..|+.+.|++ +.+++... ..
T Consensus 361 d~tL~-------sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~L------------e~ 421 (483)
T KOG4341|consen 361 DGTLA-------SLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATL------------EH 421 (483)
T ss_pred hhhHh-------hhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHH------------HH
Confidence 21 11 1225688999999999877 333 11 23567888999999 55555432 24
Q ss_pred CCCCCccceeecccCCcccccCCC--CCCCCCcceEe
Q 037847 501 HNFFPRLEYLTMWRGTNLKSVYPN--PQPFPKLKKIQ 535 (542)
Q Consensus 501 ~~~~~~L~~L~l~~c~~l~~~~~~--~~~~p~L~~L~ 535 (542)
...+++|+.+.+.+|.....-+.. ...+|+++...
T Consensus 422 l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a 458 (483)
T KOG4341|consen 422 LSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHA 458 (483)
T ss_pred HhhCcccceeeeechhhhhhhhhHHHHhhCccceehh
Confidence 556889999999888877653322 33467766543
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.43 E-value=1.9e-07 Score=66.63 Aligned_cols=58 Identities=31% Similarity=0.485 Sum_probs=35.7
Q ss_pred CCCEEeccCCCCCcccH-HhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCcc
Q 037847 277 SLHHLDLSSTDITGLPQ-ELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCG 335 (542)
Q Consensus 277 ~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~ 335 (542)
+|++|++++|.++.+|. .+..+++|++|++++| .+..+|.+.+..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45666666666666553 4456666666666666 4555655556666666666666654
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.42 E-value=2.3e-07 Score=66.21 Aligned_cols=58 Identities=34% Similarity=0.524 Sum_probs=34.1
Q ss_pred CccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCc-cccCCCCCCCEEeccCCC
Q 037847 229 RLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLP-SGISGLVSLHHLDLSSTD 287 (542)
Q Consensus 229 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp-~~i~~l~~L~~L~l~~~~ 287 (542)
+|++|++++|.+..+++..|.++++|++|++++| .+..+| ..|..+++|++|++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4566666666666666555666666666666666 344443 345566666666666554
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=1.2e-08 Score=92.89 Aligned_cols=181 Identities=23% Similarity=0.172 Sum_probs=93.3
Q ss_pred CCCEEeccCCCCCc--ccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcc
Q 037847 277 SLHHLDLSSTDITG--LPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEP 354 (542)
Q Consensus 277 ~L~~L~l~~~~i~~--lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 354 (542)
.|++|||++..|+. +.--+..+.+|+.|.+.++..-+.+... +.+-.+|+.|+++.|.-... ..
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~-iAkN~~L~~lnlsm~sG~t~-------------n~ 251 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNT-IAKNSNLVRLNLSMCSGFTE-------------NA 251 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHH-Hhccccceeeccccccccch-------------hH
Confidence 36677777665554 4344556677777777776433334333 55556777777776653210 01
Q ss_pred hhHhhccccCCceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecc-cccccccceeeecccCccceeec
Q 037847 355 LMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLH-LAYMENLQELELESCNLEEMKID 433 (542)
Q Consensus 355 ~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~ 433 (542)
.---+.+++.|..|+++|+.......-....+....+..|++.++........... ...+++|.+|++++|...+- +
T Consensus 252 ~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~--~ 329 (419)
T KOG2120|consen 252 LQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN--D 329 (419)
T ss_pred HHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc--h
Confidence 11124566666667777665433222112223333445555555432111111222 23567777777777655441 1
Q ss_pred cchhhcccccccccccCEEEEccCCC---CCcchhhhccCcceEEEec
Q 037847 434 STEEVKKLFRNGFRNLNTVVLRSCRG---KDLTWLVFVQNLKQLNMQG 478 (542)
Q Consensus 434 ~~~~~~~~~~~~l~~L~~L~L~~c~~---~~~~~l~~l~~L~~L~L~~ 478 (542)
.+ .....|+.|++|.++.|.. +.+-.+...|+|.+|++.+
T Consensus 330 ~~-----~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 330 CF-----QEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFG 372 (419)
T ss_pred HH-----HHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecc
Confidence 00 0112367777777777765 2223355667777777766
No 44
>PLN03150 hypothetical protein; Provisional
Probab=98.28 E-value=1.6e-06 Score=92.52 Aligned_cols=89 Identities=26% Similarity=0.398 Sum_probs=78.5
Q ss_pred CccEEEecCCCCCCcCccccCCCCCCCEEeccCCCCC-cccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEec
Q 037847 253 TLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDIT-GLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRL 331 (542)
Q Consensus 253 ~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l 331 (542)
.++.|+|+++.....+|..++.+.+|++|+|++|.+. .+|..++.+++|+.|++++|.....+|.. ++++++|++|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEEC
Confidence 4788999999666789999999999999999999987 48999999999999999999666688886 899999999999
Q ss_pred cCccccccccC
Q 037847 332 CGCGRFGVIKG 342 (542)
Q Consensus 332 ~~~~~~~~~~~ 342 (542)
++|.+.+.+|.
T Consensus 498 s~N~l~g~iP~ 508 (623)
T PLN03150 498 NGNSLSGRVPA 508 (623)
T ss_pred cCCcccccCCh
Confidence 99998876654
No 45
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.21 E-value=1.9e-07 Score=85.20 Aligned_cols=79 Identities=19% Similarity=0.147 Sum_probs=48.3
Q ss_pred ccccCEEEEccCCC---CCcchhhhccCcceEEEeccchhhhcccccccccccccCCcCCCCCccceeecccCCcccccC
Q 037847 446 FRNLNTVVLRSCRG---KDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLKSVY 522 (542)
Q Consensus 446 l~~L~~L~L~~c~~---~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 522 (542)
||++..+.+..|++ ..-.....+|.+--|.|+.+++..+... ....+||+|..|.+.+.|-+..+.
T Consensus 198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasv-----------D~Ln~f~~l~dlRv~~~Pl~d~l~ 266 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASV-----------DALNGFPQLVDLRVSENPLSDPLR 266 (418)
T ss_pred cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHH-----------HHHcCCchhheeeccCCccccccc
Confidence 67777777777766 2222234566666777777777666542 255667777777777777666654
Q ss_pred CC------CCCCCCcceEe
Q 037847 523 PN------PQPFPKLKKIQ 535 (542)
Q Consensus 523 ~~------~~~~p~L~~L~ 535 (542)
.+ ++.+|+++.|+
T Consensus 267 ~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 267 GGERRFLLIARLTKVQVLN 285 (418)
T ss_pred CCcceEEEEeeccceEEec
Confidence 43 22355555543
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.18 E-value=1.7e-07 Score=95.45 Aligned_cols=197 Identities=25% Similarity=0.265 Sum_probs=107.4
Q ss_pred CCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccCCCCCcccHHhhcCCCCCEEe
Q 037847 226 TCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLN 305 (542)
Q Consensus 226 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~ 305 (542)
.+..+..+.+..|.+...... +..+++|.+|++.+| .+..+...+..+.+|++|++++|.|+.+. .+..++.|+.|+
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~-l~~~~~l~~l~l~~n-~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNH-LSKLKSLEALDLYDN-KIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELN 146 (414)
T ss_pred HhHhHHhhccchhhhhhhhcc-cccccceeeeecccc-chhhcccchhhhhcchheecccccccccc-chhhccchhhhe
Confidence 344444555555554442222 556666666666666 55555533566666666666666666652 355566666666
Q ss_pred ccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHh--hccccCCceeeeEecchHHHHHhhc
Q 037847 306 LDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKE--LLGLKHLNVLSWSFGSSLAVQKFLK 383 (542)
Q Consensus 306 l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~L~~L~~l~~~~~~~~~~~~l~~ 383 (542)
+.+| .+..++. +..+++|+.+++.+|.+... .. +..+..++.+.+..+...
T Consensus 147 l~~N-~i~~~~~--~~~l~~L~~l~l~~n~i~~i-----------------e~~~~~~~~~l~~l~l~~n~i~------- 199 (414)
T KOG0531|consen 147 LSGN-LISDISG--LESLKSLKLLDLSYNRIVDI-----------------ENDELSELISLEELDLGGNSIR------- 199 (414)
T ss_pred eccC-cchhccC--CccchhhhcccCCcchhhhh-----------------hhhhhhhccchHHHhccCCchh-------
Confidence 6666 4555544 45566666666666654311 11 223333333333322211
Q ss_pred CchhhccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccchhhccccccccc--ccCEEEEccCCC-C
Q 037847 384 YPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFR--NLNTVVLRSCRG-K 460 (542)
Q Consensus 384 ~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~--~L~~L~L~~c~~-~ 460 (542)
....+..+..+..+++..+.+..+.. . ..+. +|+.+++.++.. .
T Consensus 200 -----------------------~i~~~~~~~~l~~~~l~~n~i~~~~~--l--------~~~~~~~L~~l~l~~n~i~~ 246 (414)
T KOG0531|consen 200 -----------------------EIEGLDLLKKLVLLSLLDNKISKLEG--L--------NELVMLHLRELYLSGNRISR 246 (414)
T ss_pred -----------------------cccchHHHHHHHHhhcccccceeccC--c--------ccchhHHHHHHhcccCcccc
Confidence 01122223344444666666654211 0 1123 388999999988 3
Q ss_pred CcchhhhccCcceEEEeccchhhhc
Q 037847 461 DLTWLVFVQNLKQLNMQGFTMEEII 485 (542)
Q Consensus 461 ~~~~l~~l~~L~~L~L~~~~l~~~~ 485 (542)
....+..++.+..|++.++.+....
T Consensus 247 ~~~~~~~~~~l~~l~~~~n~~~~~~ 271 (414)
T KOG0531|consen 247 SPEGLENLKNLPVLDLSSNRISNLE 271 (414)
T ss_pred ccccccccccccccchhhccccccc
Confidence 3366778888999999988877654
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.17 E-value=2.8e-07 Score=93.79 Aligned_cols=128 Identities=32% Similarity=0.407 Sum_probs=103.1
Q ss_pred ccccceEEEeecCCcCC-CCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEe
Q 037847 204 EWEGAKRISLTANGIGS-LSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLD 282 (542)
Q Consensus 204 ~~~~l~~l~l~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~ 282 (542)
.+..+..+.+..+.+.. ...+..+.+|..|++.+|.+..+... +..+.+|++|++++| .+..+. .+..+..|+.|+
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N-~I~~i~-~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFN-KITKLE-GLSTLTLLKELN 146 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccc-hhhhhcchheecccc-cccccc-chhhccchhhhe
Confidence 34556666677887777 34588899999999999998877654 678999999999999 777776 678888999999
Q ss_pred ccCCCCCcccHHhhcCCCCCEEeccCCcccCccch-hhcCCCCCCcEEeccCcccc
Q 037847 283 LSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPH-QLISCFSKLEVLRLCGCGRF 337 (542)
Q Consensus 283 l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~-~~~~~l~~L~~L~l~~~~~~ 337 (542)
+.+|.|+.++ .+..+++|+.+++++| .+..+.. . ...+.+|+.+.+.+|.+.
T Consensus 147 l~~N~i~~~~-~~~~l~~L~~l~l~~n-~i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 147 LSGNLISDIS-GLESLKSLKLLDLSYN-RIVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred eccCcchhcc-CCccchhhhcccCCcc-hhhhhhhhh-hhhccchHHHhccCCchh
Confidence 9999998874 4566999999999999 5555554 2 367889999999888764
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.11 E-value=8.3e-08 Score=97.50 Aligned_cols=154 Identities=19% Similarity=0.273 Sum_probs=90.6
Q ss_pred CcccccccceEEEeecCCcCCCCCCCCC-CCccEEEccCc--ccccccchh---hcc---CCCccEEEecCCCCCCcCcc
Q 037847 200 PKVEEWEGAKRISLTANGIGSLSEIPTC-PRLVTLLLDGN--RIEEITDGF---FQS---LSTLRVLSLRGNFPPSTLPS 270 (542)
Q Consensus 200 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~-~~L~~L~l~~~--~~~~~~~~~---~~~---l~~L~~L~l~~~~~~~~lp~ 270 (542)
-++..++.+|+|.+.++++..+..+..+ ..|+.|.-.+. .+.++.... +++ ...|.+.+.+.| .+..+-.
T Consensus 103 i~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN-~L~~mD~ 181 (1096)
T KOG1859|consen 103 ISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYN-RLVLMDE 181 (1096)
T ss_pred ceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchh-hHHhHHH
Confidence 3455667888888888877654333222 12333332221 111111100 110 124556666666 4555555
Q ss_pred ccCCCCCCCEEeccCCCCCcccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccC
Q 037847 271 GISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCD 350 (542)
Q Consensus 271 ~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 350 (542)
++.-++.|+.|||++|.++..- .+..|++|++|||+.| .+..+|.-....+ .|+.|.+++|.+.
T Consensus 182 SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc-~L~~L~lrnN~l~------------- 245 (1096)
T KOG1859|consen 182 SLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYN-CLRHVPQLSMVGC-KLQLLNLRNNALT------------- 245 (1096)
T ss_pred HHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccc-hhccccccchhhh-hheeeeecccHHH-------------
Confidence 6667778888888888777764 6777888888888887 5666665212222 3778888777653
Q ss_pred CCcchhHhhccccCCceeeeEecc
Q 037847 351 GAEPLMKELLGLKHLNVLSWSFGS 374 (542)
Q Consensus 351 ~~~~~~~~l~~L~~L~~l~~~~~~ 374 (542)
.+.++.+|++|+.|++++|-
T Consensus 246 ----tL~gie~LksL~~LDlsyNl 265 (1096)
T KOG1859|consen 246 ----TLRGIENLKSLYGLDLSYNL 265 (1096)
T ss_pred ----hhhhHHhhhhhhccchhHhh
Confidence 45566677777777777654
No 49
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.09 E-value=5.9e-06 Score=53.97 Aligned_cols=40 Identities=45% Similarity=0.576 Sum_probs=23.9
Q ss_pred CCCEEeccCCCCCcccHHhhcCCCCCEEeccCCcccCccch
Q 037847 277 SLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPH 317 (542)
Q Consensus 277 ~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~ 317 (542)
+|++|++++|.|+.+|..+++|++|++|++++| .++.++.
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~~ 41 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDISP 41 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEGG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCcC
Confidence 566666666666666666666666666666666 4444443
No 50
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.03 E-value=7e-07 Score=83.50 Aligned_cols=249 Identities=16% Similarity=0.132 Sum_probs=134.9
Q ss_pred hccCCCccEEEecCCCCCC----cCccccCCCCCCCEEeccCC---CC-CcccHH-------hhcCCCCCEEeccCCccc
Q 037847 248 FQSLSTLRVLSLRGNFPPS----TLPSGISGLVSLHHLDLSST---DI-TGLPQE-------LKALEKLRYLNLDYAFHL 312 (542)
Q Consensus 248 ~~~l~~L~~L~l~~~~~~~----~lp~~i~~l~~L~~L~l~~~---~i-~~lp~~-------i~~l~~L~~L~l~~~~~~ 312 (542)
+..+..++.+++++|.... .+-+.+.+.+.|+.-+++.- ++ .++|+. +...++|++++|++|-.-
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 5577899999999995433 23445667778999999863 22 236654 345669999999999543
Q ss_pred Cccch---hhcCCCCCCcEEeccCccccccccCCCCccccCCCcc------hhHhhccccCCceeeeEecchH--HHHHh
Q 037847 313 SIIPH---QLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEP------LMKELLGLKHLNVLSWSFGSSL--AVQKF 381 (542)
Q Consensus 313 ~~lp~---~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~~L~~L~~l~~~~~~~~--~~~~l 381 (542)
...+. ..+.++.+|++|.+.+|.+... . + ..... .....++-..|+++...-+... +...+
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~-a---g----~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~ 177 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLGPE-A---G----GRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATAL 177 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCChh-H---H----HHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHH
Confidence 33332 3466789999999999986421 0 0 00000 1122334466777766644321 11111
Q ss_pred hcCchhhccceeEEeccccCCCCC--ceecccccccccceeeecccCccceeeccchhhcccccccccccCEEEEccCCC
Q 037847 382 LKYPKLVSITQSVWVECGTYTRPP--FNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRG 459 (542)
Q Consensus 382 ~~~~~~~~~l~~l~l~~~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~ 459 (542)
....+..+.++.+.+......... .....+..+++|+.|++.+|.++.-.-..+. .....+++|+.|++++|.+
T Consensus 178 A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~La----kaL~s~~~L~El~l~dcll 253 (382)
T KOG1909|consen 178 AEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALA----KALSSWPHLRELNLGDCLL 253 (382)
T ss_pred HHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHH----HHhcccchheeeccccccc
Confidence 222222344444444333211111 1122455677777777777776541100000 1113356777777777776
Q ss_pred --CCcchh-----hhccCcceEEEeccchhhhcccccccccccccCCcCCCCCccceeecccCC
Q 037847 460 --KDLTWL-----VFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGT 516 (542)
Q Consensus 460 --~~~~~l-----~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 516 (542)
.....+ ...|+|+.|.+.+|.++.-....- ......-|.|+.|.+.+|.
T Consensus 254 ~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~l--------a~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 254 ENEGAIAFVDALKESAPSLEVLELAGNEITRDAALAL--------AACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred ccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHH--------HHHHhcchhhHHhcCCccc
Confidence 222221 136777777777766654321100 0123336777777777653
No 51
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.97 E-value=1.1e-05 Score=52.71 Aligned_cols=40 Identities=33% Similarity=0.501 Sum_probs=28.9
Q ss_pred CCccEEEecCCCCCCcCccccCCCCCCCEEeccCCCCCccc
Q 037847 252 STLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLP 292 (542)
Q Consensus 252 ~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp 292 (542)
++|++|++++| .+.++|..+++|++|++|++++|.++.+|
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCC-CCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 46778888888 67777766788888888888888777664
No 52
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.95 E-value=2.9e-05 Score=76.34 Aligned_cols=64 Identities=19% Similarity=0.263 Sum_probs=41.4
Q ss_pred hccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccCC-CCCcccHHhhcCCCCCEEeccCCcccCccch
Q 037847 248 FQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSST-DITGLPQELKALEKLRYLNLDYAFHLSIIPH 317 (542)
Q Consensus 248 ~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~-~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~ 317 (542)
+..+.+++.|++++| .+..+| .+ ..+|+.|.+++| .++.+|..+ ..+|++|++++|..+..+|.
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP-~L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLP-VL--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccC-CC--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc
Confidence 445677888888877 677777 22 235777777765 566666554 24677777777755555554
No 53
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.83 E-value=3.7e-07 Score=92.95 Aligned_cols=128 Identities=25% Similarity=0.294 Sum_probs=87.7
Q ss_pred cccccceEEEeecCCcCCCCC-CCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEE
Q 037847 203 EEWEGAKRISLTANGIGSLSE-IPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHL 281 (542)
Q Consensus 203 ~~~~~l~~l~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L 281 (542)
..|.++...++++|.+..++. +.-++.|+.|+++.|.+.... ++..+++|+.|||++| .+..+|.--..-.+|+.|
T Consensus 161 ~~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~L~~L 237 (1096)
T KOG1859|consen 161 PVWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYN-CLRHVPQLSMVGCKLQLL 237 (1096)
T ss_pred hhhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccc-hhccccccchhhhhheee
Confidence 346667777777777766653 555677888888888776655 3778888888888888 667666322222348888
Q ss_pred eccCCCCCcccHHhhcCCCCCEEeccCCccc--CccchhhcCCCCCCcEEeccCccc
Q 037847 282 DLSSTDITGLPQELKALEKLRYLNLDYAFHL--SIIPHQLISCFSKLEVLRLCGCGR 336 (542)
Q Consensus 282 ~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~--~~lp~~~~~~l~~L~~L~l~~~~~ 336 (542)
++++|.++++ .+|.+|.+|+.||++.|-.. .++-. ++.|..|+.|.+.||++
T Consensus 238 ~lrnN~l~tL-~gie~LksL~~LDlsyNll~~hseL~p--LwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 238 NLRNNALTTL-RGIENLKSLYGLDLSYNLLSEHSELEP--LWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred eecccHHHhh-hhHHhhhhhhccchhHhhhhcchhhhH--HHHHHHHHHHhhcCCcc
Confidence 8888877776 46778888888888887221 12222 55667777888877765
No 54
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.83 E-value=2e-06 Score=69.56 Aligned_cols=93 Identities=20% Similarity=0.275 Sum_probs=79.2
Q ss_pred CCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccCCCCCcccHHhhcCCCCCE
Q 037847 224 IPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRY 303 (542)
Q Consensus 224 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~ 303 (542)
+....+|...++++|.+.+.|+.+-.+++.++.|++.+| .+.++|..+..++.|+.|+++.|.+...|+.+..|.+|-.
T Consensus 49 l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~ 127 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDM 127 (177)
T ss_pred HhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHH
Confidence 455667888899999998888887778888999999999 7889999999999999999999999889999888999999
Q ss_pred EeccCCcccCccchh
Q 037847 304 LNLDYAFHLSIIPHQ 318 (542)
Q Consensus 304 L~l~~~~~~~~lp~~ 318 (542)
|+..++ ....+|.+
T Consensus 128 Lds~~n-a~~eid~d 141 (177)
T KOG4579|consen 128 LDSPEN-ARAEIDVD 141 (177)
T ss_pred hcCCCC-ccccCcHH
Confidence 988887 56667665
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.57 E-value=0.00028 Score=69.59 Aligned_cols=118 Identities=21% Similarity=0.349 Sum_probs=76.1
Q ss_pred ccccccceEEEeecCCcCCCCCCCCCCCccEEEccCc-ccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCE
Q 037847 202 VEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGN-RIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHH 280 (542)
Q Consensus 202 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~ 280 (542)
+..+.++++|+++++.+..+|.+. .+|++|.+.+| .++.++.. + ..+|++|++++|..+..+|.+ |+.
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~LP--~sLtsL~Lsnc~nLtsLP~~-L--P~nLe~L~Ls~Cs~L~sLP~s------Le~ 116 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPVLP--NELTEITIENCNNLTTLPGS-I--PEGLEKLTVCHCPEISGLPES------VRS 116 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCCCC--CCCcEEEccCCCCcccCCch-h--hhhhhheEccCcccccccccc------cce
Confidence 334567889999999888887432 46999999886 45555443 3 257999999998767777754 566
Q ss_pred EeccCC---CCCcccHHhhcCC------------------CCCEEeccCCcccCccchhhcCCCCCCcEEeccCc
Q 037847 281 LDLSST---DITGLPQELKALE------------------KLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGC 334 (542)
Q Consensus 281 L~l~~~---~i~~lp~~i~~l~------------------~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~ 334 (542)
|++..+ .+..+|+++..|. +|++|++++|.. ..+|.. +. .+|++|.+..+
T Consensus 117 L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~-i~LP~~-LP--~SLk~L~ls~n 187 (426)
T PRK15386 117 LEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSN-IILPEK-LP--ESLQSITLHIE 187 (426)
T ss_pred EEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCc-ccCccc-cc--ccCcEEEeccc
Confidence 667654 3566777765542 566677766632 234432 22 35666666543
No 56
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.56 E-value=4.3e-05 Score=70.20 Aligned_cols=81 Identities=26% Similarity=0.324 Sum_probs=37.8
Q ss_pred CCCCccEEEccCccccccc--chhhccCCCccEEEecCCCC---CCcCccccCCCCCCCEEeccCCCCC--cccHHhhcC
Q 037847 226 TCPRLVTLLLDGNRIEEIT--DGFFQSLSTLRVLSLRGNFP---PSTLPSGISGLVSLHHLDLSSTDIT--GLPQELKAL 298 (542)
Q Consensus 226 ~~~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~---~~~lp~~i~~l~~L~~L~l~~~~i~--~lp~~i~~l 298 (542)
.+..++.+++.+|.+++.. ...+..++.|++|+++.|.. +..+| -.+.+|+.|-|.++.+. ..-..+..+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl~~lVLNgT~L~w~~~~s~l~~l 145 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNLRVLVLNGTGLSWTQSTSSLDDL 145 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccceEEEEEcCCCCChhhhhhhhhcc
Confidence 4455666666666543221 22245566666666666521 11222 23445555555555332 133334444
Q ss_pred CCCCEEeccCC
Q 037847 299 EKLRYLNLDYA 309 (542)
Q Consensus 299 ~~L~~L~l~~~ 309 (542)
+.++.|.++.|
T Consensus 146 P~vtelHmS~N 156 (418)
T KOG2982|consen 146 PKVTELHMSDN 156 (418)
T ss_pred hhhhhhhhccc
Confidence 44444444444
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.50 E-value=7.4e-05 Score=79.79 Aligned_cols=130 Identities=22% Similarity=0.285 Sum_probs=86.0
Q ss_pred ccceEEEeecCCcCC--CC-C-CCCCCCccEEEccCcccccc-cchhhccCCCccEEEecCCCCCCcCccccCCCCCCCE
Q 037847 206 EGAKRISLTANGIGS--LS-E-IPTCPRLVTLLLDGNRIEEI-TDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHH 280 (542)
Q Consensus 206 ~~l~~l~l~~~~~~~--~~-~-~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~ 280 (542)
.++++|++.+...-. .+ . ..-+|.|++|.+.+-.+... ......++++|+.||++++ .+..+ ..+++|++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc-HHHhccccHHH
Confidence 678888887753321 11 1 24578889988888755322 2333567889999999998 67777 58888999998
Q ss_pred EeccCCCCCcc--cHHhhcCCCCCEEeccCCcccCcc--ch---hhcCCCCCCcEEeccCcccc
Q 037847 281 LDLSSTDITGL--PQELKALEKLRYLNLDYAFHLSII--PH---QLISCFSKLEVLRLCGCGRF 337 (542)
Q Consensus 281 L~l~~~~i~~l--p~~i~~l~~L~~L~l~~~~~~~~l--p~---~~~~~l~~L~~L~l~~~~~~ 337 (542)
|.+++-.+..- -..+.+|++|++||+|........ .. +.-..|++||.|+++++.+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 88877666542 245678889999998886433221 11 00224778888888776543
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.48 E-value=0.00019 Score=62.47 Aligned_cols=100 Identities=31% Similarity=0.396 Sum_probs=62.7
Q ss_pred cceEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCc--cccCCCCCCCEEecc
Q 037847 207 GAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLP--SGISGLVSLHHLDLS 284 (542)
Q Consensus 207 ~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp--~~i~~l~~L~~L~l~ 284 (542)
....+++.+|.+..++.+..++.|.+|.+.+|.++.+.+..-..+++|..|.+.+| .+..+- .-+..++.|++|.+-
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccceeeec
Confidence 45567778888877777888888888888888888777775555677888888887 444332 123455566666666
Q ss_pred CCCCCcccH----HhhcCCCCCEEecc
Q 037847 285 STDITGLPQ----ELKALEKLRYLNLD 307 (542)
Q Consensus 285 ~~~i~~lp~----~i~~l~~L~~L~l~ 307 (542)
+|.++.-+. .+.++++|++||..
T Consensus 122 ~Npv~~k~~YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 122 GNPVEHKKNYRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred CCchhcccCceeEEEEecCcceEeehh
Confidence 655443221 13444444444443
No 59
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.31 E-value=3.1e-05 Score=62.85 Aligned_cols=105 Identities=28% Similarity=0.343 Sum_probs=80.5
Q ss_pred ccEEEccCcccccccc--hhhccCCCccEEEecCCCCCCcCccccCC-CCCCCEEeccCCCCCcccHHhhcCCCCCEEec
Q 037847 230 LVTLLLDGNRIEEITD--GFFQSLSTLRVLSLRGNFPPSTLPSGISG-LVSLHHLDLSSTDITGLPQELKALEKLRYLNL 306 (542)
Q Consensus 230 L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~lp~~i~~-l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l 306 (542)
+..++++.|.+-.++. ..+.+...|+..+|++| ...++|+.|.. .+.+.+|++.+|.|+++|..+..++.|+.|++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N-~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDN-GFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL 107 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccc-hhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence 4456666665543322 22556678888999999 78888888764 45889999999999999999999999999999
Q ss_pred cCCcccCccchhhcCCCCCCcEEeccCcccc
Q 037847 307 DYAFHLSIIPHQLISCFSKLEVLRLCGCGRF 337 (542)
Q Consensus 307 ~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~ 337 (542)
+.| .+...|.- +-.|.+|-.|+..++.+.
T Consensus 108 ~~N-~l~~~p~v-i~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 108 RFN-PLNAEPRV-IAPLIKLDMLDSPENARA 136 (177)
T ss_pred ccC-ccccchHH-HHHHHhHHHhcCCCCccc
Confidence 998 56667764 566888888888777654
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.29 E-value=0.00024 Score=75.95 Aligned_cols=126 Identities=18% Similarity=0.212 Sum_probs=77.5
Q ss_pred cccceEEEeecCCcCCC---CCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCc--CccccCCCCCCC
Q 037847 205 WEGAKRISLTANGIGSL---SEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPST--LPSGISGLVSLH 279 (542)
Q Consensus 205 ~~~l~~l~l~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--lp~~i~~l~~L~ 279 (542)
++.+++|.+.+-.+..- .-..++++|+.||+++++++.+.. ++.+++|++|.+++- .... --..+.+|++|+
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~G--IS~LknLq~L~mrnL-e~e~~~~l~~LF~L~~L~ 223 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSG--ISRLKNLQVLSMRNL-EFESYQDLIDLFNLKKLR 223 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHH--HhccccHHHHhccCC-CCCchhhHHHHhcccCCC
Confidence 36777787777554321 124678888888888888877633 788888888887776 3332 123566788888
Q ss_pred EEeccCCCCCcccHH-------hhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccC
Q 037847 280 HLDLSSTDITGLPQE-------LKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCG 333 (542)
Q Consensus 280 ~L~l~~~~i~~lp~~-------i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~ 333 (542)
.||+|+..-..-+.. -..|++|+.||.+++..-..+-...+..=++|+.+...+
T Consensus 224 vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~~ 284 (699)
T KOG3665|consen 224 VLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAALD 284 (699)
T ss_pred eeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhhhhh
Confidence 888887643332221 134788888888877433333333333334555554433
No 61
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.26 E-value=6e-05 Score=68.39 Aligned_cols=244 Identities=19% Similarity=0.133 Sum_probs=110.7
Q ss_pred CCCccEEEccCccccccc----chhhccCCCccEEEecCCCC---CCcCc-------cccCCCCCCCEEeccCCCCCc-c
Q 037847 227 CPRLVTLLLDGNRIEEIT----DGFFQSLSTLRVLSLRGNFP---PSTLP-------SGISGLVSLHHLDLSSTDITG-L 291 (542)
Q Consensus 227 ~~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~---~~~lp-------~~i~~l~~L~~L~l~~~~i~~-l 291 (542)
+..+..++++||.+..-. ...+..-++|++.+++.-.. ...+| +.+-.|++|+..+|+.|.+.. .
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 445555666666443211 12234445666666655411 11222 234466777777777775543 3
Q ss_pred cH----HhhcCCCCCEEeccCCcccCccchhhcC-------------CCCCCcEEeccCccccccccCCCCccccCCCcc
Q 037847 292 PQ----ELKALEKLRYLNLDYAFHLSIIPHQLIS-------------CFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEP 354 (542)
Q Consensus 292 p~----~i~~l~~L~~L~l~~~~~~~~lp~~~~~-------------~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 354 (542)
|+ -|.+-+.|.||.+++| .+..+..+-|+ .-+.|+...+..|.+.. .....
T Consensus 109 ~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen-----------gs~~~ 176 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN-----------GSKEL 176 (388)
T ss_pred chHHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc-----------CcHHH
Confidence 33 3456667777777777 34333222122 34566666665555421 11112
Q ss_pred hhHhhccccCCceeeeEecchHHH--HH-hhcCchhhccceeEEeccccCCCCCcee--cccccccccceeeecccCccc
Q 037847 355 LMKELLGLKHLNVLSWSFGSSLAV--QK-FLKYPKLVSITQSVWVECGTYTRPPFNV--LHLAYMENLQELELESCNLEE 429 (542)
Q Consensus 355 ~~~~l~~L~~L~~l~~~~~~~~~~--~~-l~~~~~~~~~l~~l~l~~~~~~~~~~~~--~~l~~l~~L~~L~l~~~~~~~ 429 (542)
+-..+.+-.+|+.+.+..++.... .. .+........++.|++.+...+...... ..+...+.|++|.+..|-+..
T Consensus 177 ~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~ 256 (388)
T COG5238 177 SAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSN 256 (388)
T ss_pred HHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhcc
Confidence 233344446677777766553211 11 1111122333444454443321111100 112333456666666665543
Q ss_pred eeeccchhhcccccccccccCEEEEccCCC--CC-----cchh--hhccCcceEEEeccchhhh
Q 037847 430 MKIDSTEEVKKLFRNGFRNLNTVVLRSCRG--KD-----LTWL--VFVQNLKQLNMQGFTMEEI 484 (542)
Q Consensus 430 ~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~--~~-----~~~l--~~l~~L~~L~L~~~~l~~~ 484 (542)
-..... ........+|+|..|...++.. .. ++.+ ..+|-|..|.+.+|.+.+.
T Consensus 257 ~G~~~v--~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~ 318 (388)
T COG5238 257 EGVKSV--LRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKEL 318 (388)
T ss_pred ccHHHH--HHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhH
Confidence 211110 0001112356666666666544 11 1111 2456666666666666544
No 62
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.23 E-value=1.6e-05 Score=72.25 Aligned_cols=101 Identities=22% Similarity=0.269 Sum_probs=73.7
Q ss_pred ccccceeeecccCccceeeccchhhcccccccccccCEEEEccCCCCCcchhhhccCcceEEEeccchhhhccccccccc
Q 037847 414 MENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDI 493 (542)
Q Consensus 414 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~ 493 (542)
+.+.++|+..||.+..+.+- ..++.|+.|.|+.|++..+.++..+.+|++|+|..|.|.++...
T Consensus 18 l~~vkKLNcwg~~L~DIsic----------~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL------ 81 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISIC----------EKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDEL------ 81 (388)
T ss_pred HHHhhhhcccCCCccHHHHH----------HhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHH------
Confidence 45677888888888764321 22788899999998888888888899999999998888877542
Q ss_pred ccccCCcCCCCCccceeecccCCcccccCCC-----CCCCCCcceEe
Q 037847 494 SEVIGSEHNFFPRLEYLTMWRGTNLKSVYPN-----PQPFPKLKKIQ 535 (542)
Q Consensus 494 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-----~~~~p~L~~L~ 535 (542)
.....+|+|+.|.|...|--..-+.. ...+|+|++|+
T Consensus 82 -----~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 82 -----EYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred -----HHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 26667899999988876654432221 22488888876
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.09 E-value=0.0007 Score=59.03 Aligned_cols=106 Identities=24% Similarity=0.272 Sum_probs=66.4
Q ss_pred CCccEEEecCCCCCCcCccccCCCCCCCEEeccCCCCCcccHHhhc-CCCCCEEeccCCcccCc---cchhhcCCCCCCc
Q 037847 252 STLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKA-LEKLRYLNLDYAFHLSI---IPHQLISCFSKLE 327 (542)
Q Consensus 252 ~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~-l~~L~~L~l~~~~~~~~---lp~~~~~~l~~L~ 327 (542)
...-.+||++| .+..++ .+..+..|.+|.+.+|+|+.+.+.+.. +++|+.|.+.+| .+.. +.. +..+++|+
T Consensus 42 d~~d~iDLtdN-dl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~p--La~~p~L~ 116 (233)
T KOG1644|consen 42 DQFDAIDLTDN-DLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDP--LASCPKLE 116 (233)
T ss_pred cccceeccccc-chhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcch--hccCCccc
Confidence 34556677777 555555 566777777888877777776555544 456888888777 3333 222 44567788
Q ss_pred EEeccCccccccccCCCCccccCCCcchhHhhccccCCceeeeEecc
Q 037847 328 VLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGS 374 (542)
Q Consensus 328 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~ 374 (542)
+|.+-+|+.. +....-..-+..+++|+.|+.....
T Consensus 117 ~Ltll~Npv~------------~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 117 YLTLLGNPVE------------HKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred eeeecCCchh------------cccCceeEEEEecCcceEeehhhhh
Confidence 8877777654 2222333345667777777776443
No 64
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.75 E-value=0.00026 Score=73.95 Aligned_cols=111 Identities=27% Similarity=0.305 Sum_probs=54.8
Q ss_pred CCCCccEEEccCc-ccccc-cchhhccCCCccEEEecCC-CCCCcCc----cccCCCCCCCEEeccCCC-CCc--ccHHh
Q 037847 226 TCPRLVTLLLDGN-RIEEI-TDGFFQSLSTLRVLSLRGN-FPPSTLP----SGISGLVSLHHLDLSSTD-ITG--LPQEL 295 (542)
Q Consensus 226 ~~~~L~~L~l~~~-~~~~~-~~~~~~~l~~L~~L~l~~~-~~~~~lp----~~i~~l~~L~~L~l~~~~-i~~--lp~~i 295 (542)
.++.|+.+.+.++ .+... .......+++|+.|+++++ ......+ .....+.+|+.|+++++. ++. +....
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 3566666666665 22221 1122456677777777662 1111111 122345666677776664 443 22222
Q ss_pred hcCCCCCEEeccCCcccCcc-chhhcCCCCCCcEEeccCccc
Q 037847 296 KALEKLRYLNLDYAFHLSII-PHQLISCFSKLEVLRLCGCGR 336 (542)
Q Consensus 296 ~~l~~L~~L~l~~~~~~~~l-p~~~~~~l~~L~~L~l~~~~~ 336 (542)
..+++|++|.+.+|..++.- -..+..++++|++|++++|..
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 33666777766666432211 112234556677777766654
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.74 E-value=0.00091 Score=60.82 Aligned_cols=81 Identities=28% Similarity=0.296 Sum_probs=40.5
Q ss_pred CCCccEEEccCcccccccchhhccCCCccEEEecCC--CCCCcCccccCCCCCCCEEeccCCCCCcc--cHHhhcCCCCC
Q 037847 227 CPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGN--FPPSTLPSGISGLVSLHHLDLSSTDITGL--PQELKALEKLR 302 (542)
Q Consensus 227 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~--~~~~~lp~~i~~l~~L~~L~l~~~~i~~l--p~~i~~l~~L~ 302 (542)
+..|..|.+.+..++.+.. +..+++|++|.++.| +....++.....+++|++|++++|.|+.+ -+.+.++.+|.
T Consensus 42 ~~~le~ls~~n~gltt~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLTN--FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK 119 (260)
T ss_pred ccchhhhhhhccceeeccc--CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence 3444455555554443333 445566666666665 33334443344446666666666654431 12234555555
Q ss_pred EEeccCC
Q 037847 303 YLNLDYA 309 (542)
Q Consensus 303 ~L~l~~~ 309 (542)
.|++.+|
T Consensus 120 ~Ldl~n~ 126 (260)
T KOG2739|consen 120 SLDLFNC 126 (260)
T ss_pred hhhcccC
Confidence 5555555
No 66
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.65 E-value=0.00065 Score=61.85 Aligned_cols=89 Identities=24% Similarity=0.245 Sum_probs=64.4
Q ss_pred hccCCCccEEEecCCCCCC----cCccccCCCCCCCEEeccCC---CCC-cccH-------HhhcCCCCCEEeccCCccc
Q 037847 248 FQSLSTLRVLSLRGNFPPS----TLPSGISGLVSLHHLDLSST---DIT-GLPQ-------ELKALEKLRYLNLDYAFHL 312 (542)
Q Consensus 248 ~~~l~~L~~L~l~~~~~~~----~lp~~i~~l~~L~~L~l~~~---~i~-~lp~-------~i~~l~~L~~L~l~~~~~~ 312 (542)
+..+..+..++|++|...+ .+...|.+-.+|+..+++.- +.. ++|+ .+-++++|+..++++|..-
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 3457889999999995443 34445667788998888763 222 2443 3568899999999999665
Q ss_pred Cccch---hhcCCCCCCcEEeccCccc
Q 037847 313 SIIPH---QLISCFSKLEVLRLCGCGR 336 (542)
Q Consensus 313 ~~lp~---~~~~~l~~L~~L~l~~~~~ 336 (542)
...|. ..|++-+.|.||.+.+|.+
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCC
Confidence 55554 3467778999999998875
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.56 E-value=0.0011 Score=60.22 Aligned_cols=102 Identities=27% Similarity=0.372 Sum_probs=58.4
Q ss_pred ccceEEEeecCCcCCCCCCCCCCCccEEEccCc--ccccccchhhccCCCccEEEecCCCCCCcCccc---cCCCCCCCE
Q 037847 206 EGAKRISLTANGIGSLSEIPTCPRLVTLLLDGN--RIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSG---ISGLVSLHH 280 (542)
Q Consensus 206 ~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~--~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~---i~~l~~L~~ 280 (542)
..+..+++.+..++.+..+..+++|+.|.++.| ....-.......+++|++|++++| .+.. +++ ...+.+|..
T Consensus 43 ~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~-lstl~pl~~l~nL~~ 120 (260)
T KOG2739|consen 43 VELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKD-LSTLRPLKELENLKS 120 (260)
T ss_pred cchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-cccc-ccccchhhhhcchhh
Confidence 455666666666666666777777777777777 322211222445577777777777 3332 222 345666667
Q ss_pred EeccCCCCCccc----HHhhcCCCCCEEeccCC
Q 037847 281 LDLSSTDITGLP----QELKALEKLRYLNLDYA 309 (542)
Q Consensus 281 L~l~~~~i~~lp----~~i~~l~~L~~L~l~~~ 309 (542)
|++..|..+.+- ..+.-+++|.+|+-...
T Consensus 121 Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 121 LDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 777776555431 22344556666654443
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.20 E-value=0.00039 Score=63.50 Aligned_cols=76 Identities=32% Similarity=0.310 Sum_probs=38.4
Q ss_pred ccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccCCCCCcccH--HhhcCCCCCEEecc
Q 037847 230 LVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQ--ELKALEKLRYLNLD 307 (542)
Q Consensus 230 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~--~i~~l~~L~~L~l~ 307 (542)
.+.|+..||.+.++.- ..+|+.|++|.|+-| .+..+. .+..++.|+.|.|+.|.|..+.+ -+.++++|+.|.|.
T Consensus 21 vkKLNcwg~~L~DIsi--c~kMp~lEVLsLSvN-kIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 21 VKKLNCWGCGLDDISI--CEKMPLLEVLSLSVN-KISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred hhhhcccCCCccHHHH--HHhcccceeEEeecc-ccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence 3444444444443321 345555555555555 344443 34555556666665555555432 24455566666665
Q ss_pred CC
Q 037847 308 YA 309 (542)
Q Consensus 308 ~~ 309 (542)
.|
T Consensus 97 EN 98 (388)
T KOG2123|consen 97 EN 98 (388)
T ss_pred cC
Confidence 54
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.84 E-value=0.0012 Score=68.94 Aligned_cols=242 Identities=21% Similarity=0.119 Sum_probs=130.1
Q ss_pred hccCCCccEEEecCCCCCCc--CccccCCCCCCCEEeccCC--CCCcc----cHHhhcCCCCCEEeccCCcccCccch-h
Q 037847 248 FQSLSTLRVLSLRGNFPPST--LPSGISGLVSLHHLDLSST--DITGL----PQELKALEKLRYLNLDYAFHLSIIPH-Q 318 (542)
Q Consensus 248 ~~~l~~L~~L~l~~~~~~~~--lp~~i~~l~~L~~L~l~~~--~i~~l----p~~i~~l~~L~~L~l~~~~~~~~lp~-~ 318 (542)
...++.|+.|.+.++..+.. +-.....+++|+.|+++++ .+... +.....+.+|+.|+++.+..+...-- .
T Consensus 184 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~ 263 (482)
T KOG1947|consen 184 LSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSA 263 (482)
T ss_pred HhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHH
Confidence 34578899999998866665 3345678899999999873 22222 23455678899999998864443322 2
Q ss_pred hcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCCceeeeEecchHHHHHhhcCchhhccceeEEecc
Q 037847 319 LISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVEC 398 (542)
Q Consensus 319 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~ 398 (542)
+...+++|++|.+.+|... .......-..++++|+.|+++++.......+.........++.+.+..
T Consensus 264 l~~~c~~L~~L~l~~c~~l-------------t~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~ 330 (482)
T KOG1947|consen 264 LASRCPNLETLSLSNCSNL-------------TDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS 330 (482)
T ss_pred HHhhCCCcceEccCCCCcc-------------chhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh
Confidence 2234788999997777621 112233334457778888888776553333322222222222222111
Q ss_pred ccCCCCCceecccccccccceeeecccCccceeeccchhhcccccccccccCEEEEccCCC-C-C-cchhhhccCcceEE
Q 037847 399 GTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRG-K-D-LTWLVFVQNLKQLN 475 (542)
Q Consensus 399 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~-~-~-~~~l~~l~~L~~L~ 475 (542)
...++.++.+.+.++..... ..........+++++.+.+..|.. . . ...+.++|+|.
T Consensus 331 ------------~~~c~~l~~~~l~~~~~~~~-----d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~--- 390 (482)
T KOG1947|consen 331 ------------LNGCPSLTDLSLSGLLTLTS-----DDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT--- 390 (482)
T ss_pred ------------cCCCccHHHHHHHHhhccCc-----hhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc---
Confidence 11133444444443322110 000112234567777777777765 1 1 12233444441
Q ss_pred EeccchhhhcccccccccccccCCcCCCCCccceeecccCCcccccCCCCC--CCCCcceEeeccCCC
Q 037847 476 MQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLKSVYPNPQ--PFPKLKKIQAFHCRQ 541 (542)
Q Consensus 476 L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~--~~p~L~~L~i~~C~~ 541 (542)
..+.. ....+..++.|.+..|.....-..... .+.+++.+++.+|+.
T Consensus 391 ------~~l~~-------------~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~ 439 (482)
T KOG1947|consen 391 ------ESLEL-------------RLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRV 439 (482)
T ss_pred ------hHHHH-------------HhccCCccceEecccCccccccchHHHhhhhhccccCCccCccc
Confidence 11110 122233488999998876654222111 167788888888874
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.80 E-value=0.0028 Score=34.30 Aligned_cols=16 Identities=44% Similarity=0.760 Sum_probs=6.3
Q ss_pred CCEEeccCCCCCcccH
Q 037847 278 LHHLDLSSTDITGLPQ 293 (542)
Q Consensus 278 L~~L~l~~~~i~~lp~ 293 (542)
|++|++++|.++.+|+
T Consensus 2 L~~Ldls~n~l~~ip~ 17 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPS 17 (22)
T ss_dssp ESEEEETSSEESEEGT
T ss_pred ccEEECCCCcCEeCCh
Confidence 3334444443333333
No 71
>PRK04841 transcriptional regulator MalT; Provisional
Probab=94.90 E-value=0.35 Score=54.95 Aligned_cols=148 Identities=16% Similarity=0.274 Sum_probs=97.4
Q ss_pred eeecC----CCChhhHHHHHHHHhccccCCCCCCHHHHHHHHHHHhCCChhHHHHHHHHHhcCCChhHHHHHHHHHhccc
Q 037847 5 KLEVY----SLAHDKAWELFQEMVERSTLDSHTSIPELAETLARECGGLPLALKIVGRAMKSQRKVGDWKRAINKMRTSA 80 (542)
Q Consensus 5 ~~~l~----~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~kc~GlPlai~~ig~~L~~~~~~~~W~~~~~~l~~~~ 80 (542)
..++. +++.+|+.++|....+..- -.+...+|.+.|+|.|+++..++..++...... ......+
T Consensus 176 ~~~l~~~~l~f~~~e~~~ll~~~~~~~~------~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~--~~~~~~~---- 243 (903)
T PRK04841 176 LLEIGSQQLAFDHQEAQQFFDQRLSSPI------EAAESSRLCDDVEGWATALQLIALSARQNNSSL--HDSARRL---- 243 (903)
T ss_pred ceecCHHhCCCCHHHHHHHHHhccCCCC------CHHHHHHHHHHhCChHHHHHHHHHHHhhCCCch--hhhhHhh----
Confidence 44556 8999999999987654321 135678999999999999999988876532100 0101111
Q ss_pred CCCCCC-hHHHHHHHHhh-cCCCCchhhhHHHhhhccCCCCcccChHHHHHHHHHcCCccccchhchHHHHHHHhccccc
Q 037847 81 SKFSGM-KEEVFSRLKFS-YDSLSTDELRSCLLYCYLYPEDYEIPKRELIDYWISEGFVYDFDDGCDFIDDLLQACLLEE 158 (542)
Q Consensus 81 ~~~~~~-~~~~~~~l~~s-y~~L~~~~~k~cfl~~~~fp~~~~~~~~~Li~~w~a~g~i~~~~~~~~~~~~L~~~~l~~~ 158 (542)
.+. ...+...+.-. ++.||+ +.+..+...|+++ .|+. .+... +... +.+...++++...++|..
T Consensus 244 ---~~~~~~~~~~~l~~~v~~~l~~-~~~~~l~~~a~~~---~~~~-~l~~~-----l~~~-~~~~~~L~~l~~~~l~~~ 309 (903)
T PRK04841 244 ---AGINASHLSDYLVEEVLDNVDL-ETRHFLLRCSVLR---SMND-ALIVR-----VTGE-ENGQMRLEELERQGLFIQ 309 (903)
T ss_pred ---cCCCchhHHHHHHHHHHhcCCH-HHHHHHHHhcccc---cCCH-HHHHH-----HcCC-CcHHHHHHHHHHCCCeeE
Confidence 110 12455544433 789999 8999999999987 3442 22221 1111 456788999999998753
Q ss_pred ---cCCCeEEeehHHHHHHHHHH
Q 037847 159 ---EGDDHVKMHDMIREMSLWIA 178 (542)
Q Consensus 159 ---~~~~~~~mhdl~~~~~~~i~ 178 (542)
+....|+.|++++++...-.
T Consensus 310 ~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 310 RMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred eecCCCCEEehhHHHHHHHHHHH
Confidence 23346889999999987643
No 72
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.80 E-value=0.094 Score=43.42 Aligned_cols=102 Identities=14% Similarity=0.318 Sum_probs=42.7
Q ss_pred CCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCc-cccCCCCCCCEEeccCCCCCcccHH-hhcCCCC
Q 037847 224 IPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLP-SGISGLVSLHHLDLSSTDITGLPQE-LKALEKL 301 (542)
Q Consensus 224 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp-~~i~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L 301 (542)
+.++++|+.+.+.. .+..+....|..+.+|+.+.+.++ +..++ ..+..+..|+.+.+.. .+..++.. +..+++|
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 44555566655553 344555555666666666666553 33332 2344555566666644 34443332 3346666
Q ss_pred CEEeccCCcccCccchhhcCCCCCCcEEecc
Q 037847 302 RYLNLDYAFHLSIIPHQLISCFSKLEVLRLC 332 (542)
Q Consensus 302 ~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~ 332 (542)
+.+.+..+ +..++...+.+. +|+.+.+.
T Consensus 84 ~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 84 KNIDIPSN--ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp CEEEETTT---BEEHTTTTTT--T--EEE-T
T ss_pred cccccCcc--ccEEchhhhcCC-CceEEEEC
Confidence 66666443 344555445554 56666554
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.45 E-value=0.016 Score=31.26 Aligned_cols=21 Identities=38% Similarity=0.618 Sum_probs=12.4
Q ss_pred CccEEEecCCCCCCcCccccCC
Q 037847 253 TLRVLSLRGNFPPSTLPSGISG 274 (542)
Q Consensus 253 ~L~~L~l~~~~~~~~lp~~i~~ 274 (542)
+|++|++++| .++.+|++|++
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSS-EESEEGTTTTT
T ss_pred CccEEECCCC-cCEeCChhhcC
Confidence 3566666666 45566655543
No 74
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.38 E-value=0.0045 Score=54.13 Aligned_cols=62 Identities=16% Similarity=0.214 Sum_probs=32.6
Q ss_pred ccccCEEEEccCCC---CCcchhh-hccCcceEEEec-cchhhhcccccccccccccCCcCCCCCccceeecccCCccc
Q 037847 446 FRNLNTVVLRSCRG---KDLTWLV-FVQNLKQLNMQG-FTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLK 519 (542)
Q Consensus 446 l~~L~~L~L~~c~~---~~~~~l~-~l~~L~~L~L~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 519 (542)
++.++.|.+.+|.. ..+..++ -.|+|+.|+|++ ..|++-.- .....|++|+.|.|.+++...
T Consensus 124 l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL------------~~L~~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 124 LRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGL------------ACLLKLKNLRRLHLYDLPYVA 190 (221)
T ss_pred cchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHH------------HHHHHhhhhHHHHhcCchhhh
Confidence 55566666666655 1222222 246666666665 55554432 144556666666666655443
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.16 E-value=0.034 Score=27.81 Aligned_cols=15 Identities=47% Similarity=0.687 Sum_probs=5.3
Q ss_pred CCCEEeccCCCCCcc
Q 037847 277 SLHHLDLSSTDITGL 291 (542)
Q Consensus 277 ~L~~L~l~~~~i~~l 291 (542)
+|+.|++++|+++++
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 344444444444443
No 76
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.10 E-value=0.2 Score=41.43 Aligned_cols=115 Identities=18% Similarity=0.355 Sum_probs=55.0
Q ss_pred ccccceEEEeecCCcCCCC--CCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCc-cccCCCCCCCE
Q 037847 204 EWEGAKRISLTANGIGSLS--EIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLP-SGISGLVSLHH 280 (542)
Q Consensus 204 ~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp-~~i~~l~~L~~ 280 (542)
...+++.+.+.. .+..+. .+.++++|+.+.+..+ +..+....|..++.|+.+.+.++ ...++ ..+..+.+|+.
T Consensus 10 ~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~ 85 (129)
T PF13306_consen 10 NCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNN--LKSIGDNAFSNCTNLKN 85 (129)
T ss_dssp T-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETST--T-EE-TTTTTT-TTECE
T ss_pred CCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccccc--ccccccccccccccccc
Confidence 334666666653 455443 3677778888888764 66666666788878888888653 33333 34556788888
Q ss_pred EeccCCCCCcccHH-hhcCCCCCEEeccCCcccCccchhhcCCCCCC
Q 037847 281 LDLSSTDITGLPQE-LKALEKLRYLNLDYAFHLSIIPHQLISCFSKL 326 (542)
Q Consensus 281 L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L 326 (542)
+++..+ +..++.. +.+. +|+.+.+.. .+..++...+.+.++|
T Consensus 86 i~~~~~-~~~i~~~~f~~~-~l~~i~~~~--~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 86 IDIPSN-ITEIGSSSFSNC-NLKEINIPS--NITKIEENAFKNCTKL 128 (129)
T ss_dssp EEETTT--BEEHTTTTTT--T--EEE-TT--B-SS----GGG-----
T ss_pred cccCcc-ccEEchhhhcCC-CceEEEECC--CccEECCccccccccC
Confidence 888654 5555433 4454 777777765 3455565555555554
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.72 E-value=0.0071 Score=54.05 Aligned_cols=86 Identities=20% Similarity=0.184 Sum_probs=69.3
Q ss_pred CCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccCCCCCcccHHhhcCCCCC
Q 037847 223 EIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLR 302 (542)
Q Consensus 223 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~ 302 (542)
++..+...+.|+++.|++...... |+.+..|..|+++.+ .+..+|++++.+..++.+++..|..+.+|.+.+++++++
T Consensus 37 ei~~~kr~tvld~~s~r~vn~~~n-~s~~t~~~rl~~skn-q~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNLGKN-FSILTRLVRLDLSKN-QIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPK 114 (326)
T ss_pred hhhccceeeeehhhhhHHHhhccc-hHHHHHHHHHhccHh-hHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcc
Confidence 456677788888888877665554 677778888888887 678888888888888888888888888898888899999
Q ss_pred EEeccCCc
Q 037847 303 YLNLDYAF 310 (542)
Q Consensus 303 ~L~l~~~~ 310 (542)
+++..++.
T Consensus 115 ~~e~k~~~ 122 (326)
T KOG0473|consen 115 KNEQKKTE 122 (326)
T ss_pred hhhhccCc
Confidence 88888875
No 78
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=90.68 E-value=0.58 Score=46.01 Aligned_cols=135 Identities=13% Similarity=0.095 Sum_probs=78.4
Q ss_pred CeeecCCCChhhHHHHHHHHhccccCCCCCCHHHHHHHHHHHhCCChhHHHHHHHHHhcCCChhHHHHHHHHHhcccCCC
Q 037847 4 EKLEVYSLAHDKAWELFQEMVERSTLDSHTSIPELAETLARECGGLPLALKIVGRAMKSQRKVGDWKRAINKMRTSASKF 83 (542)
Q Consensus 4 ~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~kc~GlPlai~~ig~~L~~~~~~~~W~~~~~~l~~~~~~~ 83 (542)
.+++++++++++..+++.+.+.......+ .+....|++.|+|.|-.+..+...+. .|-.+. ......
T Consensus 173 ~~~~l~~~~~~e~~~il~~~~~~~~~~~~---~~~~~~ia~~~~G~pR~a~~~l~~~~------~~a~~~---~~~~I~- 239 (328)
T PRK00080 173 IVQRLEFYTVEELEKIVKRSARILGVEID---EEGALEIARRSRGTPRIANRLLRRVR------DFAQVK---GDGVIT- 239 (328)
T ss_pred eeeecCCCCHHHHHHHHHHHHHHcCCCcC---HHHHHHHHHHcCCCchHHHHHHHHHH------HHHHHc---CCCCCC-
Confidence 35889999999999999998865432232 36789999999999965544444322 222110 000000
Q ss_pred CCChHHHHHHHHhhcCCCCchhhhHHHh-hhccCCCCcccChHHHHHHHHHcCCccccchhchHHH-HHHHhccccc
Q 037847 84 SGMKEEVFSRLKFSYDSLSTDELRSCLL-YCYLYPEDYEIPKRELIDYWISEGFVYDFDDGCDFID-DLLQACLLEE 158 (542)
Q Consensus 84 ~~~~~~~~~~l~~sy~~L~~~~~k~cfl-~~~~fp~~~~~~~~~Li~~w~a~g~i~~~~~~~~~~~-~L~~~~l~~~ 158 (542)
...-......+...|..|++ ..+..+. ....|+.+ .+..+.+.... | ...+..+..++ .|++.+|++.
T Consensus 240 ~~~v~~~l~~~~~~~~~l~~-~~~~~l~~~~~~~~~~-~~~~~~~a~~l---g--~~~~~~~~~~e~~Li~~~li~~ 309 (328)
T PRK00080 240 KEIADKALDMLGVDELGLDE-MDRKYLRTIIEKFGGG-PVGLDTLAAAL---G--EERDTIEDVYEPYLIQQGFIQR 309 (328)
T ss_pred HHHHHHHHHHhCCCcCCCCH-HHHHHHHHHHHHcCCC-ceeHHHHHHHH---C--CCcchHHHHhhHHHHHcCCccc
Confidence 01111445556677888887 4555553 55556554 45544442221 1 11144555666 8888888875
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.57 E-value=0.28 Score=27.59 Aligned_cols=19 Identities=37% Similarity=0.642 Sum_probs=10.4
Q ss_pred CCCCEEeccCCCCCcccHH
Q 037847 276 VSLHHLDLSSTDITGLPQE 294 (542)
Q Consensus 276 ~~L~~L~l~~~~i~~lp~~ 294 (542)
.+|++|++++|.++.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 3455555555555555544
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.57 E-value=0.28 Score=27.59 Aligned_cols=19 Identities=37% Similarity=0.642 Sum_probs=10.4
Q ss_pred CCCCEEeccCCCCCcccHH
Q 037847 276 VSLHHLDLSSTDITGLPQE 294 (542)
Q Consensus 276 ~~L~~L~l~~~~i~~lp~~ 294 (542)
.+|++|++++|.++.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 3455555555555555544
No 81
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.75 E-value=0.03 Score=49.12 Aligned_cols=62 Identities=21% Similarity=0.392 Sum_probs=37.8
Q ss_pred ccccccccceeeecccCccc-eeeccchhhcccccccccccCEEEEccCCC---CCcchhhhccCcceEEEec
Q 037847 410 HLAYMENLQELELESCNLEE-MKIDSTEEVKKLFRNGFRNLNTVVLRSCRG---KDLTWLVFVQNLKQLNMQG 478 (542)
Q Consensus 410 ~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~---~~~~~l~~l~~L~~L~L~~ 478 (542)
.+..++.++.|.+..|.... ..++.+. ...++|+.|+|++|.. ..+.++..+++|+.|.|.+
T Consensus 120 ~L~~l~~i~~l~l~~ck~~dD~~L~~l~-------~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 120 HLRDLRSIKSLSLANCKYFDDWCLERLG-------GLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred HHhccchhhhheeccccchhhHHHHHhc-------ccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 44555666666666665443 1111111 1367778888887766 5566677777777777776
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.34 E-value=0.012 Score=52.53 Aligned_cols=95 Identities=23% Similarity=0.138 Sum_probs=78.5
Q ss_pred ccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccCCCCCcccHHhhcCCCCCEEeccCCcccCccchhhc
Q 037847 241 EEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLI 320 (542)
Q Consensus 241 ~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~ 320 (542)
..++-..+..++..++||++.+ ....+-..++.+..|..|+++.+.+.-+|+..+.+..++++++..| ..+..|.. .
T Consensus 31 s~~~v~ei~~~kr~tvld~~s~-r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s-~ 107 (326)
T KOG0473|consen 31 SEIPVREIASFKRVTVLDLSSN-RLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKN-NHSQQPKS-Q 107 (326)
T ss_pred cccchhhhhccceeeeehhhhh-HHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhcc-chhhCCcc-c
Confidence 3444444677889999999999 5556666788888999999999999999999999999999998877 78889987 8
Q ss_pred CCCCCCcEEeccCccccc
Q 037847 321 SCFSKLEVLRLCGCGRFG 338 (542)
Q Consensus 321 ~~l~~L~~L~l~~~~~~~ 338 (542)
++++.++.++.-++.+..
T Consensus 108 ~k~~~~k~~e~k~~~~~~ 125 (326)
T KOG0473|consen 108 KKEPHPKKNEQKKTEFFR 125 (326)
T ss_pred cccCCcchhhhccCcchH
Confidence 999999999988776543
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.01 E-value=0.61 Score=26.14 Aligned_cols=22 Identities=36% Similarity=0.501 Sum_probs=16.4
Q ss_pred CCCCCEEeccCCcccCccchhhc
Q 037847 298 LEKLRYLNLDYAFHLSIIPHQLI 320 (542)
Q Consensus 298 l~~L~~L~l~~~~~~~~lp~~~~ 320 (542)
|++|++|++++| .+..+|.+++
T Consensus 1 L~~L~~L~L~~N-~l~~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNN-QLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCC-cCCcCCHHHc
Confidence 467888888888 6777877643
No 84
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.01 E-value=0.61 Score=26.14 Aligned_cols=22 Identities=36% Similarity=0.501 Sum_probs=16.4
Q ss_pred CCCCCEEeccCCcccCccchhhc
Q 037847 298 LEKLRYLNLDYAFHLSIIPHQLI 320 (542)
Q Consensus 298 l~~L~~L~l~~~~~~~~lp~~~~ 320 (542)
|++|++|++++| .+..+|.+++
T Consensus 1 L~~L~~L~L~~N-~l~~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNN-QLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCC-cCCcCCHHHc
Confidence 467888888888 6777877643
No 85
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=86.15 E-value=0.49 Score=26.59 Aligned_cols=15 Identities=20% Similarity=0.636 Sum_probs=10.5
Q ss_pred CCCcceEeeccCCCC
Q 037847 528 FPKLKKIQAFHCRQL 542 (542)
Q Consensus 528 ~p~L~~L~i~~C~~L 542 (542)
+|+|++|++++|+++
T Consensus 1 c~~L~~L~l~~C~~i 15 (26)
T smart00367 1 CPNLRELDLSGCTNI 15 (26)
T ss_pred CCCCCEeCCCCCCCc
Confidence 467777777777753
No 86
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=84.95 E-value=4.2 Score=38.56 Aligned_cols=57 Identities=14% Similarity=0.215 Sum_probs=43.9
Q ss_pred CeeecCCCChhhHHHHHHHHhccccCCCCCC-HHHHHHHHHHHhCCChhHHHHHHHHH
Q 037847 4 EKLEVYSLAHDKAWELFQEMVERSTLDSHTS-IPELAETLARECGGLPLALKIVGRAM 60 (542)
Q Consensus 4 ~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~-~~~~~~~i~~kc~GlPlai~~ig~~L 60 (542)
..+++++++.+|..+++...+.......... -.+..+.|++.++|.|..|..++..+
T Consensus 185 ~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 185 ASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred eeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 3578999999999999998774322111122 35789999999999999999888887
No 87
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=83.96 E-value=29 Score=33.49 Aligned_cols=135 Identities=17% Similarity=0.086 Sum_probs=75.5
Q ss_pred CeeecCCCChhhHHHHHHHHhccccCCCCCCHHHHHHHHHHHhCCChhHHHHHHHHHhcCCChhHHHHHHHHHhcccCCC
Q 037847 4 EKLEVYSLAHDKAWELFQEMVERSTLDSHTSIPELAETLARECGGLPLALKIVGRAMKSQRKVGDWKRAINKMRTSASKF 83 (542)
Q Consensus 4 ~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~kc~GlPlai~~ig~~L~~~~~~~~W~~~~~~l~~~~~~~ 83 (542)
.+++++++++++..+++.+.+.......+ .+....|++.|+|.|-.+..++..+ |..+. ........
T Consensus 152 ~~~~l~~l~~~e~~~il~~~~~~~~~~~~---~~al~~ia~~~~G~pR~~~~ll~~~--------~~~a~-~~~~~~it- 218 (305)
T TIGR00635 152 IILRLEFYTVEELAEIVSRSAGLLNVEIE---PEAALEIARRSRGTPRIANRLLRRV--------RDFAQ-VRGQKIIN- 218 (305)
T ss_pred eEEEeCCCCHHHHHHHHHHHHHHhCCCcC---HHHHHHHHHHhCCCcchHHHHHHHH--------HHHHH-HcCCCCcC-
Confidence 35789999999999999998854332222 4667899999999997765555433 11100 00000000
Q ss_pred CCChHHHHHHHHhhcCCCCchhhhHHHh-hhccCCCCcccChHHHHHHHHHcCCccccchhchHHH-HHHHhccccc
Q 037847 84 SGMKEEVFSRLKFSYDSLSTDELRSCLL-YCYLYPEDYEIPKRELIDYWISEGFVYDFDDGCDFID-DLLQACLLEE 158 (542)
Q Consensus 84 ~~~~~~~~~~l~~sy~~L~~~~~k~cfl-~~~~fp~~~~~~~~~Li~~w~a~g~i~~~~~~~~~~~-~L~~~~l~~~ 158 (542)
...-..+...+..+|..+++ +-+..+. ..+.+..+ .+..+++.... |.-. ...+..++ .|++++++..
T Consensus 219 ~~~v~~~l~~l~~~~~~l~~-~~~~~L~al~~~~~~~-~~~~~~ia~~l---g~~~--~~~~~~~e~~Li~~~li~~ 288 (305)
T TIGR00635 219 RDIALKALEMLMIDELGLDE-IDRKLLSVLIEQFQGG-PVGLKTLAAAL---GEDA--DTIEDVYEPYLLQIGFLQR 288 (305)
T ss_pred HHHHHHHHHHhCCCCCCCCH-HHHHHHHHHHHHhCCC-cccHHHHHHHh---CCCc--chHHHhhhHHHHHcCCccc
Confidence 00001333335667888887 4444443 44555432 34433332211 2111 45666677 6999999975
No 88
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=74.96 E-value=1.9 Score=24.23 Aligned_cols=17 Identities=41% Similarity=0.759 Sum_probs=10.5
Q ss_pred CCCEEeccCCCCCcccH
Q 037847 277 SLHHLDLSSTDITGLPQ 293 (542)
Q Consensus 277 ~L~~L~l~~~~i~~lp~ 293 (542)
+|++|++++|.++++|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 45666666666666664
No 89
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=62.18 E-value=6.8 Score=22.06 Aligned_cols=14 Identities=43% Similarity=0.617 Sum_probs=6.9
Q ss_pred CCCCEEeccCCCCC
Q 037847 276 VSLHHLDLSSTDIT 289 (542)
Q Consensus 276 ~~L~~L~l~~~~i~ 289 (542)
.+|+.|+++.|.|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 34555555555443
No 90
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=55.65 E-value=4.8 Score=21.89 Aligned_cols=14 Identities=50% Similarity=0.634 Sum_probs=7.0
Q ss_pred CCccEEEccCcccc
Q 037847 228 PRLVTLLLDGNRIE 241 (542)
Q Consensus 228 ~~L~~L~l~~~~~~ 241 (542)
++|++|++++|.+.
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 45666666666554
No 91
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=55.29 E-value=0.33 Score=50.03 Aligned_cols=38 Identities=18% Similarity=0.218 Sum_probs=22.2
Q ss_pred cccCEEEEccCCC--CCcch----hhhccCcceEEEeccchhhh
Q 037847 447 RNLNTVVLRSCRG--KDLTW----LVFVQNLKQLNMQGFTMEEI 484 (542)
Q Consensus 447 ~~L~~L~L~~c~~--~~~~~----l~~l~~L~~L~L~~~~l~~~ 484 (542)
..++.++++.|.+ ..... +...+.+++|.++.|.+.+.
T Consensus 262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~ 305 (478)
T KOG4308|consen 262 ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDY 305 (478)
T ss_pred hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccH
Confidence 4556777777766 22222 33456677777777665544
No 92
>PRK06893 DNA replication initiation factor; Validated
Probab=52.15 E-value=47 Score=30.60 Aligned_cols=55 Identities=13% Similarity=0.062 Sum_probs=42.0
Q ss_pred CCeeecCCCChhhHHHHHHHHhccccCCCCCCHHHHHHHHHHHhCCChhHHHHHHHHH
Q 037847 3 AEKLEVYSLAHDKAWELFQEMVERSTLDSHTSIPELAETLARECGGLPLALKIVGRAM 60 (542)
Q Consensus 3 ~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~kc~GlPlai~~ig~~L 60 (542)
+.+++++++++++.+++++++++......+ .++..-|++++.|-.-++..+=..|
T Consensus 153 g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~---~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 153 GEIYQLNDLTDEQKIIVLQRNAYQRGIELS---DEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred CCeeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhccCCHHHHHHHHHHH
Confidence 357899999999999999999975543333 5778899999998776665554444
No 93
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=49.90 E-value=1.7e+02 Score=32.47 Aligned_cols=140 Identities=18% Similarity=0.229 Sum_probs=95.4
Q ss_pred CCChhhHHHHHHHHhccccCCCCCCHHHHHHHHHHHhCCChhHHHHHHHHHhcCCChhHHHHHHHHHhcccCCCCCChHH
Q 037847 10 SLAHDKAWELFQEMVERSTLDSHTSIPELAETLARECGGLPLALKIVGRAMKSQRKVGDWKRAINKMRTSASKFSGMKEE 89 (542)
Q Consensus 10 ~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~kc~GlPlai~~ig~~L~~~~~~~~W~~~~~~l~~~~~~~~~~~~~ 89 (542)
.++.||+-++|....... --..-.+.+.+.-.|-+-|+.-++-.++++.+.+.--. .+.+.+..
T Consensus 193 rf~~eE~~~fl~~~~~l~------Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~----------~LsG~~~~ 256 (894)
T COG2909 193 RFDTEEAAAFLNDRGSLP------LDAADLKALYDRTEGWAAALQLIALALRNNTSAEQSLR----------GLSGAASH 256 (894)
T ss_pred cCChHHHHHHHHHcCCCC------CChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhh----------hccchHHH
Confidence 367888999887755211 11345788899999999999999888884333322111 12222223
Q ss_pred HHHHHH-hhcCCCCchhhhHHHhhhccCCCCcccChHHHHHHHHHcCCccccchhchHHHHHHHhccccc---cCCCeEE
Q 037847 90 VFSRLK-FSYDSLSTDELRSCLLYCYLYPEDYEIPKRELIDYWISEGFVYDFDDGCDFIDDLLQACLLEE---EGDDHVK 165 (542)
Q Consensus 90 ~~~~l~-~sy~~L~~~~~k~cfl~~~~fp~~~~~~~~~Li~~w~a~g~i~~~~~~~~~~~~L~~~~l~~~---~~~~~~~ 165 (542)
+.+-|. --+|.||+ ++|..++-+|+++.- -++|+..-.++ +.|..++++|..+++|-. +...-|+
T Consensus 257 l~dYL~eeVld~Lp~-~l~~FLl~~svl~~f----~~eL~~~Ltg~------~ng~amLe~L~~~gLFl~~Ldd~~~Wfr 325 (894)
T COG2909 257 LSDYLVEEVLDRLPP-ELRDFLLQTSVLSRF----NDELCNALTGE------ENGQAMLEELERRGLFLQRLDDEGQWFR 325 (894)
T ss_pred HHHHHHHHHHhcCCH-HHHHHHHHHHhHHHh----hHHHHHHHhcC------CcHHHHHHHHHhCCCceeeecCCCceee
Confidence 333222 23689999 899999999988642 24455544443 688899999999999985 4777899
Q ss_pred eehHHHHHHHH
Q 037847 166 MHDMIREMSLW 176 (542)
Q Consensus 166 mhdl~~~~~~~ 176 (542)
.|.+..+|-+.
T Consensus 326 yH~LFaeFL~~ 336 (894)
T COG2909 326 YHHLFAEFLRQ 336 (894)
T ss_pred hhHHHHHHHHh
Confidence 99999988764
No 94
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=49.42 E-value=8.2 Score=39.69 Aligned_cols=89 Identities=19% Similarity=0.181 Sum_probs=48.9
Q ss_pred cccccceeeecccCccceeeccchhhcccccccccccCEEEEccCC--CCCcchhhh--ccCcceEEEeccchhhhcccc
Q 037847 413 YMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCR--GKDLTWLVF--VQNLKQLNMQGFTMEEIISVE 488 (542)
Q Consensus 413 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~--~~~~~~l~~--l~~L~~L~L~~~~l~~~~~~~ 488 (542)
+.+.+..+.+++|++..+ +.+.. -....|+|+.|+|++|. .....++.. ...|++|-+.+|.+-+--...
T Consensus 216 n~p~i~sl~lsnNrL~~L--d~~ss----lsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~ 289 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHL--DALSS----LSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDR 289 (585)
T ss_pred CCcceeeeecccchhhch--hhhhH----HHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhh
Confidence 456778888888877652 11111 11236888888888883 344444442 356778888876654321110
Q ss_pred cccccccccCCcCCCCCccceeec
Q 037847 489 KLSDISEVIGSEHNFFPRLEYLTM 512 (542)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~L~~L~l 512 (542)
. +........||+|..|+=
T Consensus 290 s-----~yv~~i~~~FPKL~~LDG 308 (585)
T KOG3763|consen 290 S-----EYVSAIRELFPKLLRLDG 308 (585)
T ss_pred H-----HHHHHHHHhcchheeecC
Confidence 0 000012336888888763
No 95
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=48.99 E-value=0.74 Score=47.47 Aligned_cols=158 Identities=25% Similarity=0.206 Sum_probs=96.1
Q ss_pred ccceEEEeecCCcCCC------CCCCCC-CCccEEEccCcccccccc----hhhccCCCccEEEecCCCCCC----cCcc
Q 037847 206 EGAKRISLTANGIGSL------SEIPTC-PRLVTLLLDGNRIEEITD----GFFQSLSTLRVLSLRGNFPPS----TLPS 270 (542)
Q Consensus 206 ~~l~~l~l~~~~~~~~------~~~~~~-~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~~----~lp~ 270 (542)
..+..+++.+|.+... ..+... +.+++|.+..|.++.... ..+.....++.++++.|.... .++.
T Consensus 115 ~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~ 194 (478)
T KOG4308|consen 115 PTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQ 194 (478)
T ss_pred ccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhh
Confidence 3455677777766632 112332 567777777776543322 224457788888888884321 1222
Q ss_pred c----cCCCCCCCEEeccCCCCCc-----ccHHhhcCCC-CCEEeccCCcccCc----cchhhcCCC-CCCcEEeccCcc
Q 037847 271 G----ISGLVSLHHLDLSSTDITG-----LPQELKALEK-LRYLNLDYAFHLSI----IPHQLISCF-SKLEVLRLCGCG 335 (542)
Q Consensus 271 ~----i~~l~~L~~L~l~~~~i~~-----lp~~i~~l~~-L~~L~l~~~~~~~~----lp~~~~~~l-~~L~~L~l~~~~ 335 (542)
. +....++++|++.+|.++. +-..+...+. +..|++..|..-.. +... +..+ ..++++++..|+
T Consensus 195 ~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~-l~~~~~~l~~l~l~~ns 273 (478)
T KOG4308|consen 195 ALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPC-LSVLSETLRVLDLSRNS 273 (478)
T ss_pred hhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHH-hcccchhhhhhhhhcCC
Confidence 2 3457889999999987764 2334555555 67788888743322 2222 4445 577899999888
Q ss_pred ccccccCCCCccccCCCcchhHhhccccCCceeeeEecch
Q 037847 336 RFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSS 375 (542)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~ 375 (542)
+.. .........+..+.+++.+.++.+..
T Consensus 274 i~~-----------~~~~~L~~~l~~~~~l~~l~l~~n~l 302 (478)
T KOG4308|consen 274 ITE-----------KGVRDLAEVLVSCRQLEELSLSNNPL 302 (478)
T ss_pred ccc-----------cchHHHHHHHhhhHHHHHhhcccCcc
Confidence 764 23334555566777888888876654
No 96
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=46.46 E-value=17 Score=20.72 Aligned_cols=13 Identities=46% Similarity=0.659 Sum_probs=7.8
Q ss_pred CCCEEeccCCCCC
Q 037847 277 SLHHLDLSSTDIT 289 (542)
Q Consensus 277 ~L~~L~l~~~~i~ 289 (542)
+|++|+|++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 5666666666554
No 97
>PF14164 YqzH: YqzH-like protein
Probab=43.91 E-value=41 Score=23.69 Aligned_cols=37 Identities=22% Similarity=0.350 Sum_probs=29.8
Q ss_pred ecCCCChhhHHHHHHHHhccccCCCCCCHHHHHHHHH
Q 037847 7 EVYSLAHDKAWELFQEMVERSTLDSHTSIPELAETLA 43 (542)
Q Consensus 7 ~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~i~ 43 (542)
+..||+++|-..|+.+..-....++..++.++...||
T Consensus 22 ~~~pls~~E~~~L~~~i~~~~~~~~~~Dl~eiVeDvV 58 (64)
T PF14164_consen 22 ECMPLSDEEWEELCKHIQERKNEEPDEDLHEIVEDVV 58 (64)
T ss_pred cCCCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence 7789999999999988876555467778888888776
No 98
>COG3899 Predicted ATPase [General function prediction only]
Probab=40.00 E-value=2.6e+02 Score=31.57 Aligned_cols=139 Identities=14% Similarity=0.148 Sum_probs=91.4
Q ss_pred CCeeecCCCChhhHHHHHHHHhccccCCCCCCHHHHHHHHHHHhCCChhHHHHHHHHHhcC------CChhHHHHHHHHH
Q 037847 3 AEKLEVYSLAHDKAWELFQEMVERSTLDSHTSIPELAETLARECGGLPLALKIVGRAMKSQ------RKVGDWKRAINKM 76 (542)
Q Consensus 3 ~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~kc~GlPlai~~ig~~L~~~------~~~~~W~~~~~~l 76 (542)
-+.+.|.||+..|.-.|-........ ....+..+.|++|-+|.|+-+.-+-..+... .+...|+.-...+
T Consensus 211 i~~I~L~PL~~~d~~~lV~~~l~~~~----~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i 286 (849)
T COG3899 211 ITTITLAPLSRADTNQLVAATLGCTK----LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASL 286 (849)
T ss_pred eeEEecCcCchhhHHHHHHHHhCCcc----cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhc
Confidence 36789999999999999988776533 2336789999999999999998877777652 3445565422111
Q ss_pred hcccCCCCCChHHHHHHHHhhcCCCCchhhhHHHhhhccCCCCcccChHHHHHHHHHcCCccccchhchHHHHHHHhccc
Q 037847 77 RTSASKFSGMKEEVFSRLKFSYDSLSTDELRSCLLYCYLYPEDYEIPKRELIDYWISEGFVYDFDDGCDFIDDLLQACLL 156 (542)
Q Consensus 77 ~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~~~~~~Li~~w~a~g~i~~~~~~~~~~~~L~~~~l~ 156 (542)
. .....+ .+.+.+..=-+.||. ..++..-..|++= -.|+.+-|...|-..+ . +.+...++.|....++
T Consensus 287 ~----~~~~~~-~vv~~l~~rl~kL~~-~t~~Vl~~AA~iG--~~F~l~~La~l~~~~~--~--~~a~~l~~al~e~lI~ 354 (849)
T COG3899 287 G----ILATTD-AVVEFLAARLQKLPG-TTREVLKAAACIG--NRFDLDTLAALAEDSP--A--LEAAALLDALQEGLIL 354 (849)
T ss_pred C----CchhhH-HHHHHHHHHHhcCCH-HHHHHHHHHHHhC--ccCCHHHHHHHHhhch--H--HHHHHHHHHhHhhcee
Confidence 1 112222 456667788899998 7899988888874 4555655555554311 0 3445555555555555
Q ss_pred c
Q 037847 157 E 157 (542)
Q Consensus 157 ~ 157 (542)
.
T Consensus 355 ~ 355 (849)
T COG3899 355 P 355 (849)
T ss_pred c
Confidence 4
No 99
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=39.45 E-value=1.8e+02 Score=22.73 Aligned_cols=66 Identities=15% Similarity=0.234 Sum_probs=48.5
Q ss_pred hHHHHHHHH--hccccCCCCCCHHHHHHHHHHHhCCChhHHHHHHHHHhcC-CChhHHHHHHHHHhccc
Q 037847 15 KAWELFQEM--VERSTLDSHTSIPELAETLARECGGLPLALKIVGRAMKSQ-RKVGDWKRAINKMRTSA 80 (542)
Q Consensus 15 ~a~~Lf~~~--a~~~~~~~~~~~~~~~~~i~~kc~GlPlai~~ig~~L~~~-~~~~~W~~~~~~l~~~~ 80 (542)
|.|++=+.- .|+.+.-++|....-+-+..++..-.|+|+..+-+.=... ...+.|..+++.++...
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~lqeikp~l 90 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYILQEIKPTL 90 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHHHHHhHHH
Confidence 778775442 4677766778888888888899999999999988664332 24668999888776544
No 100
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=38.31 E-value=1.4e+02 Score=23.57 Aligned_cols=67 Identities=16% Similarity=0.197 Sum_probs=42.2
Q ss_pred hhhHHHHHHH--HhccccCCCCCCHHHHHHHHHHHhCCChhHHHHHHHHHhcCCC-hhHHHHHHHHHhcc
Q 037847 13 HDKAWELFQE--MVERSTLDSHTSIPELAETLARECGGLPLALKIVGRAMKSQRK-VGDWKRAINKMRTS 79 (542)
Q Consensus 13 ~~~a~~Lf~~--~a~~~~~~~~~~~~~~~~~i~~kc~GlPlai~~ig~~L~~~~~-~~~W~~~~~~l~~~ 79 (542)
..|.|++=+. .+|+.+.-+.|...+-+-+..++..-.|+|+.++-+.=....+ .+.|..+++.++-.
T Consensus 23 ~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lqElkPt 92 (108)
T PF02284_consen 23 DIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQELKPT 92 (108)
T ss_dssp T--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHHHHhhH
Confidence 3456666443 2466666677777777888888889999999988766433333 44899888876643
No 101
>PRK09087 hypothetical protein; Validated
Probab=33.70 E-value=2.7e+02 Score=25.52 Aligned_cols=69 Identities=10% Similarity=0.041 Sum_probs=47.3
Q ss_pred CCeeecCCCChhhHHHHHHHHhccccCCCCCCHHHHHHHHHHHhCCChhHHHHHHHHHh------c-CCChhHHHHHHH
Q 037847 3 AEKLEVYSLAHDKAWELFQEMVERSTLDSHTSIPELAETLARECGGLPLALKIVGRAMK------S-QRKVGDWKRAIN 74 (542)
Q Consensus 3 ~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~kc~GlPlai~~ig~~L~------~-~~~~~~W~~~~~ 74 (542)
..+++++++++++-.+++++++-......+ +++..-|++.+.|-.-++..+-..|. + +.+....+.+++
T Consensus 145 gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~---~ev~~~La~~~~r~~~~l~~~l~~L~~~~~~~~~~it~~~~~~~l~ 220 (226)
T PRK09087 145 ATVVEIGEPDDALLSQVIFKLFADRQLYVD---PHVVYYLVSRMERSLFAAQTIVDRLDRLALERKSRITRALAAEVLN 220 (226)
T ss_pred CceeecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 467999999999999999999854332333 57888899999987777764333331 1 244555555544
No 102
>PF14516 AAA_35: AAA-like domain
Probab=32.46 E-value=4.9e+02 Score=25.50 Aligned_cols=55 Identities=18% Similarity=0.164 Sum_probs=44.0
Q ss_pred CCCeeecCCCChhhHHHHHHHHhccccCCCCCCHHHHHHHHHHHhCCChhHHHHHHHHHhcC
Q 037847 2 DAEKLEVYSLAHDKAWELFQEMVERSTLDSHTSIPELAETLARECGGLPLALKIVGRAMKSQ 63 (542)
Q Consensus 2 ~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~kc~GlPlai~~ig~~L~~~ 63 (542)
.+..++|++++.+|..+|..++-..-. .+..++|....+|.|--+..++..+..+
T Consensus 192 Ig~~i~L~~Ft~~ev~~L~~~~~~~~~-------~~~~~~l~~~tgGhP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 192 IGQPIELPDFTPEEVQELAQRYGLEFS-------QEQLEQLMDWTGGHPYLVQKACYLLVEE 246 (331)
T ss_pred cccceeCCCCCHHHHHHHHHhhhccCC-------HHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 356789999999999999988643211 2338999999999999999999999763
No 103
>PF03861 ANTAR: ANTAR domain; InterPro: IPR005561 ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins []. This domain has been detected in various response regulators of two-component systems, which are structured around two proteins, a histidine kinase and a response regulator. This domain is also found in one-component sensory regulators from a variety of bacteria. Most response regulators interact with DNA, however ANTAR-containing regulators interact with RNA. The majority of the domain consists of a coiled-coil.; PDB: 4AKK_A 1SD5_A 1S8N_A 1QO0_E.
Probab=32.32 E-value=67 Score=21.88 Aligned_cols=31 Identities=29% Similarity=0.574 Sum_probs=21.2
Q ss_pred CCCChhhHHHHHHHHhccccCCCCCCHHHHHHHHH
Q 037847 9 YSLAHDKAWELFQEMVERSTLDSHTSIPELAETLA 43 (542)
Q Consensus 9 ~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~i~ 43 (542)
.++++++|++++.+.|-..+ -.+.+++..|+
T Consensus 26 ~g~~e~~A~~~Lr~~Am~~~----~~l~~vA~~ii 56 (56)
T PF03861_consen 26 YGLSEDEAYRLLRRQAMRRR----RSLADVAEEII 56 (56)
T ss_dssp HT--HHHHHHHHHHHHHHCT----S-HHHHHHHHH
T ss_pred hCcCHHHHHHHHHHHHHHcC----CCHHHHHHHHC
Confidence 47899999999999996544 34567777664
No 104
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=28.24 E-value=2.4e+02 Score=26.90 Aligned_cols=93 Identities=16% Similarity=0.209 Sum_probs=59.5
Q ss_pred eecCCCChhhHHHHHHHHhccccCCCCCCHHHHHHHHHHHhCC-ChhHHHHHHHHHhcC---------CChhHHHHHHHH
Q 037847 6 LEVYSLAHDKAWELFQEMVERSTLDSHTSIPELAETLARECGG-LPLALKIVGRAMKSQ---------RKVGDWKRAINK 75 (542)
Q Consensus 6 ~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~kc~G-lPlai~~ig~~L~~~---------~~~~~W~~~~~~ 75 (542)
+.+..-+++|--..++..+-......| ++++++|+++++| +.-|+.++-..=..+ -..-+|+.++..
T Consensus 181 iRvpaps~eeI~~vl~~v~~kE~l~lp---~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~~~a~~~~i~~~dWe~~i~e 257 (351)
T KOG2035|consen 181 IRVPAPSDEEITSVLSKVLKKEGLQLP---KELLKRIAEKSNRNLRRALLMLEAVRVNNEPFTANSQVIPKPDWEIYIQE 257 (351)
T ss_pred EeCCCCCHHHHHHHHHHHHHHhcccCc---HHHHHHHHHHhcccHHHHHHHHHHHHhccccccccCCCCCCccHHHHHHH
Confidence 567888999999999988865554444 8999999999998 566665543322111 135689987766
Q ss_pred HhcccCCCCCChHHHHHHHHhhcCCCC
Q 037847 76 MRTSASKFSGMKEEVFSRLKFSYDSLS 102 (542)
Q Consensus 76 l~~~~~~~~~~~~~~~~~l~~sy~~L~ 102 (542)
.-...-..++ ...+..+-..=|+-|.
T Consensus 258 ~a~~i~~eQs-~~~L~~vR~~LYeLL~ 283 (351)
T KOG2035|consen 258 IARVILKEQS-PAKLLEVRGRLYELLS 283 (351)
T ss_pred HHHHHHhccC-HHHHHHHHHHHHHHHh
Confidence 6554433222 2255555555565554
No 105
>PRK13342 recombination factor protein RarA; Reviewed
Probab=25.78 E-value=5.7e+02 Score=25.94 Aligned_cols=57 Identities=16% Similarity=0.084 Sum_probs=40.1
Q ss_pred CeeecCCCChhhHHHHHHHHhccccCCCCCCHHHHHHHHHHHhCCChhHHHHHHHHH
Q 037847 4 EKLEVYSLAHDKAWELFQEMVERSTLDSHTSIPELAETLARECGGLPLALKIVGRAM 60 (542)
Q Consensus 4 ~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~kc~GlPlai~~ig~~L 60 (542)
.++++.++++++.++++++.+.........--.+..+.|++.|+|-|..+..+-...
T Consensus 144 ~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~~ 200 (413)
T PRK13342 144 QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLELA 200 (413)
T ss_pred eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 468899999999999999866332111101225678899999999998776655544
No 106
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=23.63 E-value=6.7e+02 Score=25.02 Aligned_cols=94 Identities=20% Similarity=0.262 Sum_probs=51.8
Q ss_pred CeeecCCCChhhHHHHHHHHhcc---ccCCCCCC-HHHHHHHHHHHhCCChhHHHHHHHHH--h---cC--CChhHHHHH
Q 037847 4 EKLEVYSLAHDKAWELFQEMVER---STLDSHTS-IPELAETLARECGGLPLALKIVGRAM--K---SQ--RKVGDWKRA 72 (542)
Q Consensus 4 ~~~~l~~L~~~~a~~Lf~~~a~~---~~~~~~~~-~~~~~~~i~~kc~GlPlai~~ig~~L--~---~~--~~~~~W~~~ 72 (542)
..+.+++++.++..+.+..++.. .. ..+++ ++.+++.+....+..+.|+.++-... . +. -+.++.+.+
T Consensus 200 ~~i~f~py~~~e~~~il~~r~~~~~~~~-~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a 278 (394)
T PRK00411 200 EEIYFPPYTADEIFDILKDRVEEGFYPG-VVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKA 278 (394)
T ss_pred ceeecCCCCHHHHHHHHHHHHHhhcccC-CCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHH
Confidence 46789999999999999988722 22 12222 23333333333455777776664322 1 11 245566655
Q ss_pred HHHHhcccCCCCCChHHHHHHHHhhcCCCCchhhhHHHhhh
Q 037847 73 INKMRTSASKFSGMKEEVFSRLKFSYDSLSTDELRSCLLYC 113 (542)
Q Consensus 73 ~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~ 113 (542)
.+.+. .....-.+..||. .++.|++.
T Consensus 279 ~~~~~-------------~~~~~~~~~~L~~--~~k~~L~a 304 (394)
T PRK00411 279 YEKSE-------------IVHLSEVLRTLPL--HEKLLLRA 304 (394)
T ss_pred HHHHH-------------HHHHHHHHhcCCH--HHHHHHHH
Confidence 55431 1223445788987 34455443
No 107
>KOG4062 consensus 6-O-methylguanine-DNA methyltransferase MGMT/MGT1, involved in DNA repair [Replication, recombination and repair]
Probab=22.04 E-value=1.3e+02 Score=25.70 Aligned_cols=17 Identities=41% Similarity=0.477 Sum_probs=15.1
Q ss_pred CCChhHHHHHHHHHhcC
Q 037847 47 GGLPLALKIVGRAMKSQ 63 (542)
Q Consensus 47 ~GlPlai~~ig~~L~~~ 63 (542)
-|.|-|+..+|+.++.+
T Consensus 116 iG~PsaaRaVg~A~~~n 132 (178)
T KOG4062|consen 116 IGNPSAARAVGSAMAHN 132 (178)
T ss_pred hCCcHHHHHHHHHHccC
Confidence 48999999999999874
No 108
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=20.92 E-value=1.1e+02 Score=19.44 Aligned_cols=10 Identities=30% Similarity=0.385 Sum_probs=5.2
Q ss_pred cccceeeecc
Q 037847 415 ENLQELELES 424 (542)
Q Consensus 415 ~~L~~L~l~~ 424 (542)
+++++|.+.+
T Consensus 12 ~~l~~L~~g~ 21 (44)
T PF05725_consen 12 SSLKSLIFGS 21 (44)
T ss_pred CCCeEEEECC
Confidence 4555565533
No 109
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=20.53 E-value=5e+02 Score=21.50 Aligned_cols=67 Identities=12% Similarity=0.183 Sum_probs=45.1
Q ss_pred hhhHHHHHHHH--hccccCCCCCCHHHHHHHHHHHhCCChhHHHHHHHHHhcCCChhH-HHHHHHHHhcc
Q 037847 13 HDKAWELFQEM--VERSTLDSHTSIPELAETLARECGGLPLALKIVGRAMKSQRKVGD-WKRAINKMRTS 79 (542)
Q Consensus 13 ~~~a~~Lf~~~--a~~~~~~~~~~~~~~~~~i~~kc~GlPlai~~ig~~L~~~~~~~~-W~~~~~~l~~~ 79 (542)
+-|.|++=+-. .|..+.-+.|...+-+-+..++..-+|+|+..+-+.=-...+.++ ...+++.++-.
T Consensus 62 ~iD~wEvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~v~elkpv 131 (149)
T KOG4077|consen 62 EIDGWEVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYYVKELKPV 131 (149)
T ss_pred cchHHHHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 34677775442 266666677788888888899999999999887665333244444 66666665543
Done!