Query 037847
Match_columns 542
No_of_seqs 305 out of 3329
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 07:52:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037847.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037847hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fmz_A Internalin; leucine ric 99.9 1.1E-25 3.9E-30 223.0 20.1 293 192-540 52-344 (347)
2 4fmz_A Internalin; leucine ric 99.9 3.6E-25 1.2E-29 219.4 23.4 286 199-540 37-322 (347)
3 3v47_A TOLL-like receptor 5B a 99.9 6.4E-25 2.2E-29 226.1 22.6 328 188-540 14-406 (455)
4 3o6n_A APL1; leucine-rich repe 99.9 3.3E-25 1.1E-29 223.3 18.2 303 203-540 42-350 (390)
5 1o6v_A Internalin A; bacterial 99.9 1.2E-23 4E-28 217.0 23.5 136 191-335 53-188 (466)
6 3oja_B Anopheles plasmodium-re 99.9 1.9E-24 6.4E-29 229.8 17.4 302 204-540 49-356 (597)
7 2id5_A Lingo-1, leucine rich r 99.9 1.3E-23 4.5E-28 217.5 22.2 308 190-540 17-331 (477)
8 2ft3_A Biglycan; proteoglycan, 99.9 1E-23 3.5E-28 207.5 18.4 295 207-541 34-332 (332)
9 3vq2_A TLR4, TOLL-like recepto 99.9 2.9E-23 9.8E-28 221.7 22.6 151 189-342 16-171 (606)
10 4ecn_A Leucine-rich repeat pro 99.9 7.1E-24 2.4E-28 230.9 17.3 329 202-540 444-838 (876)
11 4eco_A Uncharacterized protein 99.9 2.5E-24 8.6E-29 230.2 12.5 134 202-337 202-366 (636)
12 1o6v_A Internalin A; bacterial 99.9 6.8E-23 2.3E-27 211.3 22.8 311 187-540 71-386 (466)
13 1xku_A Decorin; proteoglycan, 99.9 6.9E-23 2.4E-27 201.4 21.1 295 206-539 31-329 (330)
14 4eco_A Uncharacterized protein 99.9 7.1E-24 2.4E-28 226.7 15.2 296 224-540 202-577 (636)
15 2z7x_B TOLL-like receptor 1, v 99.9 4.2E-23 1.4E-27 216.2 20.7 141 188-336 4-150 (520)
16 2z63_A TOLL-like receptor 4, v 99.9 4E-23 1.4E-27 218.9 20.2 144 192-338 15-163 (570)
17 2a5y_B CED-4; apoptosis; HET: 99.9 4.6E-25 1.6E-29 231.1 5.1 163 4-181 286-471 (549)
18 3rgz_A Protein brassinosteroid 99.9 1.8E-23 6.2E-28 228.6 17.9 318 192-540 186-549 (768)
19 2z81_A CD282 antigen, TOLL-lik 99.9 4.1E-23 1.4E-27 217.8 19.0 150 192-343 13-167 (549)
20 3o6n_A APL1; leucine-rich repe 99.9 8.1E-23 2.8E-27 205.8 19.9 273 225-540 42-329 (390)
21 3t6q_A CD180 antigen; protein- 99.9 1.4E-22 4.8E-27 216.3 22.2 303 202-539 125-510 (606)
22 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.3E-22 4.5E-27 214.3 21.1 142 187-336 34-181 (562)
23 3bz5_A Internalin-J, INLJ; leu 99.9 1.2E-22 4.1E-27 208.0 20.0 232 202-484 38-269 (457)
24 2z63_A TOLL-like receptor 4, v 99.9 1E-22 3.5E-27 215.8 19.9 152 188-341 32-194 (570)
25 3t6q_A CD180 antigen; protein- 99.9 2.7E-22 9.3E-27 214.1 22.4 146 189-338 17-167 (606)
26 3v47_A TOLL-like receptor 5B a 99.9 3E-22 1E-26 206.0 20.9 295 209-540 13-382 (455)
27 1ziw_A TOLL-like receptor 3; i 99.9 4.1E-22 1.4E-26 215.6 22.6 149 188-339 8-160 (680)
28 3vq2_A TLR4, TOLL-like recepto 99.9 2.1E-22 7.2E-27 215.0 19.9 121 189-310 37-164 (606)
29 3j0a_A TOLL-like receptor 5; m 99.9 1.1E-21 3.7E-26 216.8 26.1 151 187-339 7-163 (844)
30 2id5_A Lingo-1, leucine rich r 99.9 5E-22 1.7E-26 205.6 21.6 287 209-540 14-307 (477)
31 4ecn_A Leucine-rich repeat pro 99.9 2.1E-22 7.1E-27 219.4 19.5 305 204-542 489-872 (876)
32 3oja_B Anopheles plasmodium-re 99.9 3.3E-22 1.1E-26 212.5 19.3 273 225-540 48-335 (597)
33 4fcg_A Uncharacterized protein 99.9 2.2E-22 7.4E-27 197.2 15.8 218 228-513 81-309 (328)
34 1ogq_A PGIP-2, polygalacturona 99.9 5.4E-23 1.9E-27 200.3 11.1 248 206-520 50-306 (313)
35 3rgz_A Protein brassinosteroid 99.9 1.1E-22 3.8E-27 222.4 13.9 284 226-534 267-567 (768)
36 1ogq_A PGIP-2, polygalacturona 99.9 2.4E-22 8.1E-27 195.8 14.1 248 228-541 50-303 (313)
37 2z80_A TOLL-like receptor 2, v 99.9 6.7E-22 2.3E-26 196.2 16.0 262 193-516 40-312 (353)
38 2z80_A TOLL-like receptor 2, v 99.9 2.6E-21 8.7E-26 192.1 19.6 270 209-540 34-312 (353)
39 2z7x_B TOLL-like receptor 1, v 99.9 2.3E-21 7.7E-26 203.0 19.9 125 209-338 3-129 (520)
40 3bz5_A Internalin-J, INLJ; leu 99.9 6.2E-21 2.1E-25 195.3 21.7 302 188-539 46-349 (457)
41 2z66_A Variable lymphocyte rec 99.9 2.2E-21 7.6E-26 188.5 17.4 242 210-516 11-259 (306)
42 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 6E-21 2.1E-25 201.6 20.6 127 206-338 31-160 (562)
43 2z81_A CD282 antigen, TOLL-lik 99.9 3.1E-21 1.1E-25 203.4 17.9 164 360-540 331-508 (549)
44 3zyi_A Leucine-rich repeat-con 99.9 9.2E-21 3.1E-25 194.6 20.8 130 206-336 75-208 (452)
45 3zyj_A Leucine-rich repeat-con 99.9 1.1E-20 3.6E-25 193.4 20.4 236 192-482 51-292 (440)
46 1ziw_A TOLL-like receptor 3; i 99.9 8.8E-21 3E-25 205.2 20.8 304 209-540 7-364 (680)
47 4fcg_A Uncharacterized protein 99.9 3.7E-21 1.3E-25 188.5 15.6 223 206-484 81-316 (328)
48 3j0a_A TOLL-like receptor 5; m 99.9 1E-20 3.4E-25 209.1 20.4 291 209-540 7-373 (844)
49 1xku_A Decorin; proteoglycan, 99.9 3.9E-20 1.3E-24 181.7 21.1 263 228-540 31-304 (330)
50 3zyi_A Leucine-rich repeat-con 99.8 4E-20 1.4E-24 189.8 21.9 242 208-516 56-301 (452)
51 3zyj_A Leucine-rich repeat-con 99.8 6.1E-20 2.1E-24 187.7 21.9 242 208-516 45-290 (440)
52 2z66_A Variable lymphocyte rec 99.8 2.6E-20 9E-25 180.9 17.1 240 191-484 14-263 (306)
53 2ft3_A Biglycan; proteoglycan, 99.8 3.6E-20 1.2E-24 182.1 17.3 262 228-540 33-305 (332)
54 4g8a_A TOLL-like receptor 4; l 99.8 1E-19 3.5E-24 195.1 21.0 145 193-340 40-189 (635)
55 1ozn_A Reticulon 4 receptor; N 99.8 2.7E-20 9.3E-25 178.8 14.6 221 209-483 14-239 (285)
56 3g06_A SSPH2 (leucine-rich rep 99.8 2E-19 6.9E-24 189.7 20.3 248 192-540 48-295 (622)
57 3o53_A Protein LRIM1, AGAP0063 99.8 4.9E-21 1.7E-25 186.9 6.8 261 206-541 34-298 (317)
58 3o53_A Protein LRIM1, AGAP0063 99.8 5E-20 1.7E-24 179.7 13.0 240 224-539 30-272 (317)
59 1jl5_A Outer protein YOPM; leu 99.8 7.7E-19 2.6E-23 179.6 22.3 120 206-337 131-250 (454)
60 1jl5_A Outer protein YOPM; leu 99.8 1.9E-18 6.6E-23 176.6 24.4 303 189-540 76-407 (454)
61 3oja_A Leucine-rich immune mol 99.8 1.5E-19 5.1E-24 186.7 15.2 236 226-537 32-270 (487)
62 1ozn_A Reticulon 4 receptor; N 99.8 3.1E-19 1.1E-23 171.5 16.3 216 191-459 18-237 (285)
63 1h6u_A Internalin H; cell adhe 99.8 6.3E-19 2.2E-23 171.0 17.5 197 202-485 37-233 (308)
64 3oja_A Leucine-rich immune mol 99.8 1E-19 3.5E-24 188.0 10.4 237 205-516 33-273 (487)
65 3sfz_A APAF-1, apoptotic pepti 99.8 3.7E-19 1.2E-23 205.7 14.3 166 3-180 277-451 (1249)
66 1h6u_A Internalin H; cell adhe 99.8 1.7E-18 5.7E-23 168.0 15.0 198 218-516 31-228 (308)
67 1wwl_A Monocyte differentiatio 99.8 5.8E-20 2E-24 178.9 4.5 128 206-337 43-186 (312)
68 1p9a_G Platelet glycoprotein I 99.8 5.1E-18 1.7E-22 163.0 17.5 133 202-338 6-138 (290)
69 3g06_A SSPH2 (leucine-rich rep 99.8 2E-17 6.9E-22 174.4 20.6 237 186-485 63-300 (622)
70 2o6q_A Variable lymphocyte rec 99.8 1.8E-17 6.2E-22 157.7 18.2 128 207-337 17-146 (270)
71 2z62_A TOLL-like receptor 4, v 99.8 1.8E-17 6E-22 158.4 17.0 55 419-482 181-237 (276)
72 1vt4_I APAF-1 related killer D 99.8 2E-18 6.8E-23 184.4 11.0 142 5-174 286-436 (1221)
73 3rfs_A Internalin B, repeat mo 99.7 2.2E-18 7.5E-23 164.2 10.1 200 201-484 36-237 (272)
74 2xwt_C Thyrotropin receptor; s 99.7 6.3E-18 2.1E-22 157.8 12.4 112 218-334 23-140 (239)
75 3rfs_A Internalin B, repeat mo 99.7 1.2E-17 4.1E-22 159.1 14.1 219 210-527 23-244 (272)
76 2o6q_A Variable lymphocyte rec 99.7 4.1E-17 1.4E-21 155.2 17.7 198 229-482 17-218 (270)
77 4g8a_A TOLL-like receptor 4; l 99.7 1.1E-16 3.9E-21 171.4 23.0 125 211-338 36-162 (635)
78 2z62_A TOLL-like receptor 4, v 99.7 5.2E-17 1.8E-21 155.1 17.1 214 193-459 16-236 (276)
79 1p9a_G Platelet glycoprotein I 99.7 3E-17 1E-21 157.6 15.0 201 224-482 6-208 (290)
80 4ay9_X Follicle-stimulating ho 99.7 8.8E-17 3E-21 159.0 17.7 236 210-538 13-255 (350)
81 1wwl_A Monocyte differentiatio 99.7 3.4E-17 1.2E-21 159.3 13.8 206 226-483 93-310 (312)
82 1z7x_W Ribonuclease inhibitor; 99.7 3.2E-19 1.1E-23 183.7 -0.7 129 207-336 4-154 (461)
83 2xwt_C Thyrotropin receptor; s 99.7 5E-17 1.7E-21 151.7 13.8 138 196-337 23-169 (239)
84 1z7x_W Ribonuclease inhibitor; 99.7 1.1E-18 3.8E-23 179.6 2.4 312 205-540 55-409 (461)
85 1h6t_A Internalin B; cell adhe 99.7 6.5E-17 2.2E-21 155.4 13.8 102 226-335 44-145 (291)
86 4glp_A Monocyte differentiatio 99.7 1.5E-16 5.1E-21 154.6 12.6 228 207-483 65-308 (310)
87 1z6t_A APAF-1, apoptotic prote 99.7 1.3E-16 4.5E-21 169.3 13.3 163 3-177 275-448 (591)
88 3ogk_B Coronatine-insensitive 99.7 3E-17 1E-21 174.6 6.8 126 205-332 191-326 (592)
89 1m9s_A Internalin B; cell inva 99.7 8.8E-17 3E-21 169.3 9.9 38 446-483 174-211 (605)
90 2ast_B S-phase kinase-associat 99.7 5.4E-17 1.8E-21 159.7 7.6 221 207-479 48-282 (336)
91 2ca6_A RAN GTPase-activating p 99.7 8.4E-17 2.9E-21 161.5 8.0 244 226-484 30-318 (386)
92 3m19_A Variable lymphocyte rec 99.7 2.2E-15 7.6E-20 141.5 16.8 129 207-337 15-144 (251)
93 3ogk_B Coronatine-insensitive 99.7 3.9E-17 1.3E-21 173.7 5.3 283 226-540 190-524 (592)
94 1h6t_A Internalin B; cell adhe 99.6 1.6E-15 5.6E-20 145.6 15.0 149 200-373 40-188 (291)
95 2ast_B S-phase kinase-associat 99.6 1.3E-16 4.3E-21 157.1 5.3 229 206-486 70-310 (336)
96 4glp_A Monocyte differentiatio 99.6 5.3E-16 1.8E-20 150.7 9.5 110 227-337 63-182 (310)
97 1m9s_A Internalin B; cell inva 99.6 2.5E-15 8.5E-20 158.3 14.4 183 233-516 26-208 (605)
98 2ca6_A RAN GTPase-activating p 99.6 9.5E-17 3.3E-21 161.1 2.1 229 238-483 19-288 (386)
99 3goz_A Leucine-rich repeat-con 99.6 8.8E-16 3E-20 152.6 9.1 109 228-337 22-151 (362)
100 3m19_A Variable lymphocyte rec 99.6 1.2E-14 4.2E-19 136.4 16.1 169 188-374 18-190 (251)
101 4ezg_A Putative uncharacterize 99.6 4.8E-15 1.6E-19 133.7 12.6 151 203-374 41-192 (197)
102 3goz_A Leucine-rich repeat-con 99.6 2.5E-16 8.5E-21 156.5 4.3 264 233-516 3-295 (362)
103 2p1m_B Transport inhibitor res 99.6 2.1E-16 7.1E-21 168.1 1.7 84 445-540 430-517 (594)
104 1xeu_A Internalin C; cellular 99.6 3.5E-15 1.2E-19 141.0 9.7 98 230-336 21-118 (263)
105 4ay9_X Follicle-stimulating ho 99.6 1.4E-14 4.9E-19 143.0 14.5 233 190-478 15-255 (350)
106 3cvr_A Invasion plasmid antige 99.6 4.4E-14 1.5E-18 147.1 17.5 114 207-337 60-173 (571)
107 2p1m_B Transport inhibitor res 99.6 3E-16 1E-20 166.9 1.0 252 251-540 210-492 (594)
108 4ezg_A Putative uncharacterize 99.6 2.7E-14 9.2E-19 128.7 13.0 146 188-337 48-194 (197)
109 3e6j_A Variable lymphocyte rec 99.6 6.6E-14 2.2E-18 129.3 15.8 142 193-337 28-172 (229)
110 2o6s_A Variable lymphocyte rec 99.6 2.4E-14 8.2E-19 130.3 12.6 125 210-337 11-137 (208)
111 1xeu_A Internalin C; cellular 99.5 3.9E-14 1.3E-18 133.8 13.4 154 195-374 30-183 (263)
112 2v9t_B SLIT homolog 2 protein 99.5 8.4E-14 2.9E-18 127.7 14.5 128 206-335 32-163 (220)
113 3cvr_A Invasion plasmid antige 99.5 7.8E-14 2.7E-18 145.3 15.2 186 229-485 60-246 (571)
114 2v9t_B SLIT homolog 2 protein 99.5 1.2E-13 4E-18 126.8 13.4 149 209-374 14-163 (220)
115 2o6s_A Variable lymphocyte rec 99.5 3.5E-13 1.2E-17 122.5 16.0 142 193-337 16-161 (208)
116 2v70_A SLIT-2, SLIT homolog 2 99.5 2.1E-13 7.3E-18 125.0 13.6 125 210-337 15-142 (220)
117 2v70_A SLIT-2, SLIT homolog 2 99.5 4.3E-13 1.5E-17 123.0 14.1 146 189-337 16-166 (220)
118 3e6j_A Variable lymphocyte rec 99.5 5.8E-13 2E-17 123.0 13.7 148 208-374 21-170 (229)
119 2xot_A Amphoterin-induced prot 99.5 3.4E-13 1.2E-17 133.7 12.9 125 210-337 22-149 (361)
120 2ell_A Acidic leucine-rich nuc 99.4 3E-13 1E-17 118.5 10.1 129 206-337 24-160 (168)
121 1a9n_A U2A', U2A'; complex (nu 99.4 1.7E-13 6E-18 121.0 7.9 136 224-376 15-153 (176)
122 2xot_A Amphoterin-induced prot 99.4 1E-12 3.4E-17 130.3 13.3 147 189-338 23-177 (361)
123 2je0_A Acidic leucine-rich nuc 99.4 4.4E-13 1.5E-17 114.8 9.0 123 206-331 17-147 (149)
124 2ell_A Acidic leucine-rich nuc 99.4 2E-12 6.9E-17 113.1 13.2 133 226-374 22-158 (168)
125 2o6r_A Variable lymphocyte rec 99.4 4.3E-12 1.5E-16 112.1 13.7 128 208-338 9-138 (177)
126 2je0_A Acidic leucine-rich nuc 99.4 1.4E-12 4.9E-17 111.6 10.3 129 226-371 15-148 (149)
127 1a9n_A U2A', U2A'; complex (nu 99.4 9.7E-13 3.3E-17 116.1 9.1 135 199-337 12-153 (176)
128 1w8a_A SLIT protein; signaling 99.4 4E-12 1.4E-16 113.8 12.7 128 209-338 11-140 (192)
129 2wfh_A SLIT homolog 2 protein 99.4 7.9E-12 2.7E-16 111.9 13.7 125 209-337 13-139 (193)
130 4b8c_D Glucose-repressible alc 99.3 3.8E-12 1.3E-16 137.4 8.5 115 224-342 220-334 (727)
131 1dce_A Protein (RAB geranylger 99.3 1.3E-11 4.4E-16 129.2 12.0 102 230-337 443-546 (567)
132 1dce_A Protein (RAB geranylger 99.3 1.5E-11 5E-16 128.8 11.5 121 207-331 442-567 (567)
133 2wfh_A SLIT homolog 2 protein 99.2 4.6E-11 1.6E-15 106.9 11.1 124 231-374 13-137 (193)
134 4b8c_D Glucose-repressible alc 99.2 2.3E-12 8E-17 139.1 2.5 139 202-343 220-360 (727)
135 1w8a_A SLIT protein; signaling 99.2 1.2E-10 3.9E-15 104.2 11.2 124 189-314 13-141 (192)
136 1ds9_A Outer arm dynein; leuci 99.2 6.9E-13 2.4E-17 119.5 -3.6 152 208-369 25-180 (198)
137 2o6r_A Variable lymphocyte rec 99.2 2.9E-10 1E-14 100.2 12.9 123 192-316 15-141 (177)
138 2r9u_A Variable lymphocyte rec 99.1 2E-10 6.9E-15 100.8 10.7 102 231-337 15-118 (174)
139 3g39_A Variable lymphocyte rec 99.1 2.7E-10 9.3E-15 99.6 10.8 103 230-337 11-115 (170)
140 2r9u_A Variable lymphocyte rec 99.1 5.4E-10 1.8E-14 98.0 11.8 106 209-317 15-122 (174)
141 1ds9_A Outer arm dynein; leuci 99.1 4.2E-12 1.4E-16 114.4 -3.0 128 229-376 24-153 (198)
142 3g39_A Variable lymphocyte rec 99.0 1E-09 3.6E-14 95.8 10.9 101 208-310 11-113 (170)
143 3sb4_A Hypothetical leucine ri 99.0 2.5E-09 8.5E-14 104.4 12.5 286 205-536 24-328 (329)
144 3sb4_A Hypothetical leucine ri 98.9 6.3E-09 2.2E-13 101.5 11.9 56 227-284 100-156 (329)
145 4fdw_A Leucine rich hypothetic 98.8 1.3E-07 4.3E-12 94.5 18.5 103 224-333 132-235 (401)
146 2ifg_A High affinity nerve gro 98.8 1.6E-08 5.3E-13 99.5 9.8 98 211-309 13-113 (347)
147 2ifg_A High affinity nerve gro 98.8 2.1E-08 7.3E-13 98.5 10.2 102 231-337 11-116 (347)
148 4fdw_A Leucine rich hypothetic 98.7 5.2E-07 1.8E-11 90.0 17.0 222 207-485 136-361 (401)
149 3un9_A NLR family member X1; l 98.5 9.9E-09 3.4E-13 101.5 0.3 128 206-336 72-223 (372)
150 3un9_A NLR family member X1; l 98.5 1.9E-08 6.4E-13 99.5 1.2 129 206-337 101-252 (372)
151 2ra8_A Uncharacterized protein 98.4 3.6E-07 1.2E-11 89.5 6.5 151 291-484 164-322 (362)
152 2ra8_A Uncharacterized protein 98.2 1.6E-06 5.5E-11 84.9 7.1 58 247-307 167-227 (362)
153 3e4g_A ATP synthase subunit S, 98.1 6.5E-07 2.2E-11 77.1 1.7 98 415-532 61-170 (176)
154 3e4g_A ATP synthase subunit S, 98.0 2.3E-06 8E-11 73.6 3.2 83 448-542 62-152 (176)
155 4fs7_A Uncharacterized protein 98.0 0.00016 5.4E-09 72.0 16.3 37 295-333 158-194 (394)
156 3rw6_A Nuclear RNA export fact 97.9 3.6E-06 1.2E-10 78.2 1.9 80 249-330 167-257 (267)
157 1io0_A Tropomodulin; LRR prote 97.8 1.1E-05 3.9E-10 70.9 4.4 81 225-306 33-128 (185)
158 4fs7_A Uncharacterized protein 97.8 0.00011 3.8E-09 73.1 11.8 84 242-331 152-237 (394)
159 1io0_A Tropomodulin; LRR prote 97.8 2.7E-05 9.2E-10 68.5 6.0 119 245-376 29-164 (185)
160 3rw6_A Nuclear RNA export fact 97.6 5.4E-05 1.9E-09 70.2 6.0 87 273-370 167-258 (267)
161 4h09_A Hypothetical leucine ri 97.4 0.0086 2.9E-07 58.9 18.1 121 205-333 45-167 (379)
162 4gt6_A Cell surface protein; l 97.3 0.0063 2.1E-07 60.3 16.5 117 208-331 66-189 (394)
163 4gt6_A Cell surface protein; l 97.3 0.0024 8.2E-08 63.3 13.4 106 224-333 59-169 (394)
164 2qen_A Walker-type ATPase; unk 96.4 0.035 1.2E-06 53.6 13.1 149 4-173 196-347 (350)
165 2fna_A Conserved hypothetical 96.3 0.049 1.7E-06 52.7 13.6 148 4-173 202-355 (357)
166 4h09_A Hypothetical leucine ri 95.6 0.033 1.1E-06 54.7 8.6 104 224-332 213-318 (379)
167 3rfe_A Platelet glycoprotein I 95.4 0.019 6.4E-07 46.7 5.2 53 280-335 12-66 (130)
168 1w5s_A Origin recognition comp 94.4 0.2 6.8E-06 49.5 10.7 139 6-158 210-370 (412)
169 3rfe_A Platelet glycoprotein I 93.6 0.12 4.1E-06 41.9 5.9 52 210-262 12-65 (130)
170 1hqc_A RUVB; extended AAA-ATPa 93.2 0.29 9.8E-06 46.6 9.0 55 4-61 161-215 (324)
171 1pgv_A TMD-1, tropomodulin TMD 92.4 0.2 7E-06 43.6 6.0 117 248-375 37-169 (197)
172 1pgv_A TMD-1, tropomodulin TMD 91.2 0.23 7.8E-06 43.3 4.8 108 226-335 39-168 (197)
173 1njg_A DNA polymerase III subu 82.7 2.4 8.3E-05 37.6 6.8 55 4-61 178-232 (250)
174 2qby_B CDC6 homolog 3, cell di 74.3 37 0.0013 32.4 12.9 137 4-158 190-338 (384)
175 2v1u_A Cell division control p 72.9 45 0.0015 31.7 13.2 138 4-158 194-350 (387)
176 2qby_A CDC6 homolog 1, cell di 64.1 74 0.0025 30.0 12.6 140 4-158 190-347 (386)
177 1fnn_A CDC6P, cell division co 54.3 54 0.0018 31.2 9.6 140 4-158 186-350 (389)
178 2chg_A Replication factor C sm 52.4 28 0.00095 29.9 6.6 54 5-61 155-208 (226)
179 1v54_E Cytochrome C oxidase po 47.3 51 0.0017 24.9 5.9 65 15-79 25-92 (109)
180 2y69_E Cytochrome C oxidase su 37.2 79 0.0027 25.3 5.9 66 15-80 68-136 (152)
181 1sxj_B Activator 1 37 kDa subu 34.3 70 0.0024 29.4 6.6 50 4-56 159-208 (323)
182 2lz0_A Uncharacterized protein 31.9 48 0.0017 24.8 4.0 19 243-261 11-29 (100)
183 1iqp_A RFCS; clamp loader, ext 30.6 1.1E+02 0.0039 27.9 7.4 55 5-62 163-217 (327)
184 1in4_A RUVB, holliday junction 29.4 2.7E+02 0.0092 25.8 9.8 50 5-57 174-223 (334)
185 2lz0_A Uncharacterized protein 27.5 56 0.0019 24.4 3.6 39 223-262 15-53 (100)
186 3bos_A Putative DNA replicatio 26.9 1.4E+02 0.0048 25.6 7.0 53 4-59 167-219 (242)
187 1utg_A Uteroglobin; steroid bi 23.4 1.4E+02 0.0048 20.5 4.8 27 47-75 1-27 (70)
No 1
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=1.1e-25 Score=223.03 Aligned_cols=293 Identities=17% Similarity=0.209 Sum_probs=173.1
Q ss_pred cCcccccCCcccccccceEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccc
Q 037847 192 AGVKLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSG 271 (542)
Q Consensus 192 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~ 271 (542)
.+.....++.+..+.+++.|++.++.+..++.+..+++|++|++++|.+..++. +..+++|++|++++| .+..+|.
T Consensus 52 ~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~l~~n-~i~~~~~- 127 (347)
T 4fmz_A 52 AGEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISA--LQNLTNLRELYLNED-NISDISP- 127 (347)
T ss_dssp CSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEECTTS-CCCCCGG-
T ss_pred eCCccccchhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCchH--HcCCCcCCEEECcCC-cccCchh-
Confidence 333444444444455555555555555555445555555555555555444322 455555555555555 3444443
Q ss_pred cCCCCCCCEEeccCCCCCcccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCC
Q 037847 272 ISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDG 351 (542)
Q Consensus 272 i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 351 (542)
+..+++|++|++++|.....+..+..+++|++|++++| .+..++. +..+++|++|++++|.+.+
T Consensus 128 ~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~--~~~l~~L~~L~l~~n~l~~------------- 191 (347)
T 4fmz_A 128 LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES-KVKDVTP--IANLTDLYSLSLNYNQIED------------- 191 (347)
T ss_dssp GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECTTSCCCC-------------
T ss_pred hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCC-CcCCchh--hccCCCCCEEEccCCcccc-------------
Confidence 55555555555555522222223555555555555555 3333333 4455555555555554321
Q ss_pred CcchhHhhccccCCceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCcccee
Q 037847 352 AEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMK 431 (542)
Q Consensus 352 ~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 431 (542)
+..+..+++|+.++++.+....... ......++.+++.++..... ..+..+++|++|++++|.+..++
T Consensus 192 ----~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~~L~~L~l~~n~l~~~----~~~~~l~~L~~L~l~~n~l~~~~ 259 (347)
T 4fmz_A 192 ----ISPLASLTSLHYFTAYVNQITDITP----VANMTRLNSLKIGNNKITDL----SPLANLSQLTWLEIGTNQISDIN 259 (347)
T ss_dssp ----CGGGGGCTTCCEEECCSSCCCCCGG----GGGCTTCCEEECCSSCCCCC----GGGTTCTTCCEEECCSSCCCCCG
T ss_pred ----cccccCCCccceeecccCCCCCCch----hhcCCcCCEEEccCCccCCC----cchhcCCCCCEEECCCCccCCCh
Confidence 1125666777777776554332211 22335567777776653221 22667788888888888776631
Q ss_pred eccchhhcccccccccccCEEEEccCCCCCcchhhhccCcceEEEeccchhhhcccccccccccccCCcCCCCCccceee
Q 037847 432 IDSTEEVKKLFRNGFRNLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLT 511 (542)
Q Consensus 432 ~~~~~~~~~~~~~~l~~L~~L~L~~c~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 511 (542)
. ...+++|+.|++++|.+..++.+..+++|++|++++|.+.+... .....+++|+.|+
T Consensus 260 --~--------~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~------------~~l~~l~~L~~L~ 317 (347)
T 4fmz_A 260 --A--------VKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDM------------EVIGGLTNLTTLF 317 (347)
T ss_dssp --G--------GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCGGGH------------HHHHTCTTCSEEE
T ss_pred --h--------HhcCCCcCEEEccCCccCCChhhcCCCCCCEEECcCCcCCCcCh------------hHhhccccCCEEE
Confidence 1 13478899999999988555778888999999999988776543 2456789999999
Q ss_pred cccCCcccccCCCCCCCCCcceEeeccCC
Q 037847 512 MWRGTNLKSVYPNPQPFPKLKKIQAFHCR 540 (542)
Q Consensus 512 l~~c~~l~~~~~~~~~~p~L~~L~i~~C~ 540 (542)
+.+|+ +..++. ...+++|++|++++|+
T Consensus 318 L~~n~-l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 318 LSQNH-ITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp CCSSS-CCCCGG-GGGCTTCSEESSSCC-
T ss_pred ccCCc-cccccC-hhhhhccceeehhhhc
Confidence 99986 666544 6679999999999985
No 2
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=3.6e-25 Score=219.43 Aligned_cols=286 Identities=19% Similarity=0.214 Sum_probs=231.7
Q ss_pred CCcccccccceEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCC
Q 037847 199 APKVEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSL 278 (542)
Q Consensus 199 ~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L 278 (542)
+.....+++++++++.++.+..++.+..+++|++|++++|.++.+++ +..+++|++|++++| .+..+| .++.+++|
T Consensus 37 ~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n-~i~~~~-~~~~l~~L 112 (347)
T 4fmz_A 37 VVTQEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTN-KITDIS-ALQNLTNL 112 (347)
T ss_dssp EECHHHHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCG-GGTTCTTC
T ss_pred cccchhcccccEEEEeCCccccchhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCC-cccCch-HHcCCCcC
Confidence 34455678999999999999999999999999999999999988776 889999999999999 677776 69999999
Q ss_pred CEEeccCCCCCcccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHh
Q 037847 279 HHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKE 358 (542)
Q Consensus 279 ~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (542)
++|++++|.++.+|. +..+++|++|++++|.....++. +..+++|++|++++|.+... ..
T Consensus 113 ~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~-----------------~~ 172 (347)
T 4fmz_A 113 RELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDV-----------------TP 172 (347)
T ss_dssp SEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCCC-----------------GG
T ss_pred CEEECcCCcccCchh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCCc-----------------hh
Confidence 999999999999887 89999999999999977777666 89999999999999986421 12
Q ss_pred hccccCCceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccchhh
Q 037847 359 LLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEV 438 (542)
Q Consensus 359 l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 438 (542)
+..+++|+.|+++.+....... ......++.+.+.++.... ...+..+++|++|++++|.+...+.
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~----~~~~~~~~~L~~L~l~~n~l~~~~~------ 238 (347)
T 4fmz_A 173 IANLTDLYSLSLNYNQIEDISP----LASLTSLHYFTAYVNQITD----ITPVANMTRLNSLKIGNNKITDLSP------ 238 (347)
T ss_dssp GGGCTTCSEEECTTSCCCCCGG----GGGCTTCCEEECCSSCCCC----CGGGGGCTTCCEEECCSSCCCCCGG------
T ss_pred hccCCCCCEEEccCCccccccc----ccCCCccceeecccCCCCC----CchhhcCCcCCEEEccCCccCCCcc------
Confidence 6788899999998775433222 2234556778877665321 1227788999999999999877532
Q ss_pred cccccccccccCEEEEccCCCCCcchhhhccCcceEEEeccchhhhcccccccccccccCCcCCCCCccceeecccCCcc
Q 037847 439 KKLFRNGFRNLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNL 518 (542)
Q Consensus 439 ~~~~~~~l~~L~~L~L~~c~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l 518 (542)
...+++|++|++++|.+..++.+..+++|++|++++|.+++++ ....+++|+.|++.+|.--
T Consensus 239 ----~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~--------------~~~~l~~L~~L~L~~n~l~ 300 (347)
T 4fmz_A 239 ----LANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDIS--------------VLNNLSQLNSLFLNNNQLG 300 (347)
T ss_dssp ----GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG--------------GGGGCTTCSEEECCSSCCC
T ss_pred ----hhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCCCh--------------hhcCCCCCCEEECcCCcCC
Confidence 2448999999999999866678899999999999999888763 4566999999999998543
Q ss_pred cccCCCCCCCCCcceEeeccCC
Q 037847 519 KSVYPNPQPFPKLKKIQAFHCR 540 (542)
Q Consensus 519 ~~~~~~~~~~p~L~~L~i~~C~ 540 (542)
...+.....+++|++|++++|+
T Consensus 301 ~~~~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 301 NEDMEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp GGGHHHHHTCTTCSEEECCSSS
T ss_pred CcChhHhhccccCCEEEccCCc
Confidence 3333335578999999999986
No 3
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.93 E-value=6.4e-25 Score=226.05 Aligned_cols=328 Identities=17% Similarity=0.129 Sum_probs=230.0
Q ss_pred EEEecCcccccCCcccccccceEEEeecCCcCCC-C-CCCCCCCccEEEccCcccc-cccchhhccCCCccEEEecCCCC
Q 037847 188 FLVRAGVKLTEAPKVEEWEGAKRISLTANGIGSL-S-EIPTCPRLVTLLLDGNRIE-EITDGFFQSLSTLRVLSLRGNFP 264 (542)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~-~-~~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~ 264 (542)
.+...+.++..+|. -.+++++|++++|.+..+ + .+.++++|++|++++|.+. .+++..|..+++|++|++++|..
T Consensus 14 ~~~c~~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l 91 (455)
T 3v47_A 14 NAICINRGLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91 (455)
T ss_dssp EEECCSSCCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTT
T ss_pred ccCcCCCCcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCcc
Confidence 34445566777776 337899999999999876 3 5899999999999999875 56667799999999999999954
Q ss_pred CCcCccccCCCCCCCEEeccCCCCCc-ccHH--hhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCcccccccc
Q 037847 265 PSTLPSGISGLVSLHHLDLSSTDITG-LPQE--LKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIK 341 (542)
Q Consensus 265 ~~~lp~~i~~l~~L~~L~l~~~~i~~-lp~~--i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~ 341 (542)
....|..++.+.+|++|++++|.+++ +|.. ++++++|++|++++|......|...++++++|++|++++|.+.+..+
T Consensus 92 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 171 (455)
T 3v47_A 92 LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICE 171 (455)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCT
T ss_pred CccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccCh
Confidence 44558889999999999999999987 4555 88999999999999954444466557899999999999999877655
Q ss_pred CCCCccc--------------cCCC-----cchhHhhccccCCceeeeEecchH--HHHHhhcCch--------------
Q 037847 342 GKEGNVL--------------CDGA-----EPLMKELLGLKHLNVLSWSFGSSL--AVQKFLKYPK-------------- 386 (542)
Q Consensus 342 ~~~~~~~--------------~~~~-----~~~~~~l~~L~~L~~l~~~~~~~~--~~~~l~~~~~-------------- 386 (542)
....... .... ......+..+++|+.|+++.+... ....+.....
T Consensus 172 ~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~ 251 (455)
T 3v47_A 172 EDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYN 251 (455)
T ss_dssp TTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTT
T ss_pred hhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccc
Confidence 4332210 0000 001112234567888888766432 1111111100
Q ss_pred ---------------------hhccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccchhhccccccc
Q 037847 387 ---------------------LVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNG 445 (542)
Q Consensus 387 ---------------------~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 445 (542)
....++.+++.++.. .......+..+++|++|++++|.+..+++..+ ..
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--------~~ 321 (455)
T 3v47_A 252 MGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKI--FALLKSVFSHFTDLEQLTLAQNEINKIDDNAF--------WG 321 (455)
T ss_dssp TSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCC--CEECTTTTTTCTTCCEEECTTSCCCEECTTTT--------TT
T ss_pred cccccchhhhccCcccccccccccCceEEEecCccc--cccchhhcccCCCCCEEECCCCcccccChhHh--------cC
Confidence 002344444443321 11112235567788888888888776554444 23
Q ss_pred ccccCEEEEccCCC--CCcchhhhccCcceEEEeccchhhhcccccccccccccCCcCCCCCccceeecccCCcccccCC
Q 037847 446 FRNLNTVVLRSCRG--KDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLKSVYP 523 (542)
Q Consensus 446 l~~L~~L~L~~c~~--~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 523 (542)
+++|++|++++|.+ ..+..++.+++|++|+|++|.++.+.. .....+++|++|++.++ .+++++.
T Consensus 322 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~------------~~~~~l~~L~~L~L~~N-~l~~~~~ 388 (455)
T 3v47_A 322 LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGD------------QSFLGLPNLKELALDTN-QLKSVPD 388 (455)
T ss_dssp CTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECT------------TTTTTCTTCCEEECCSS-CCSCCCT
T ss_pred cccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccCh------------hhccccccccEEECCCC-ccccCCH
Confidence 78899999999988 334457788999999999988877642 36677999999999996 5777766
Q ss_pred CC-CCCCCcceEeeccCC
Q 037847 524 NP-QPFPKLKKIQAFHCR 540 (542)
Q Consensus 524 ~~-~~~p~L~~L~i~~C~ 540 (542)
.. ..+++|++|++++++
T Consensus 389 ~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 389 GIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp TTTTTCTTCCEEECCSSC
T ss_pred hHhccCCcccEEEccCCC
Confidence 43 678999999998765
No 4
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.93 E-value=3.3e-25 Score=223.29 Aligned_cols=303 Identities=18% Similarity=0.157 Sum_probs=206.2
Q ss_pred cccccceEEEeecCCcCCCCC--CCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcC-ccccCCCCCCC
Q 037847 203 EEWEGAKRISLTANGIGSLSE--IPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTL-PSGISGLVSLH 279 (542)
Q Consensus 203 ~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l-p~~i~~l~~L~ 279 (542)
..+.+++.+++.++.+..+|. +..+++|++|++++|.+..+++..+..+++|++|++++| .+..+ |..++.+++|+
T Consensus 42 ~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLT 120 (390)
T ss_dssp GGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCC
T ss_pred cccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCC-CCCcCCHHHhcCCCCCC
Confidence 345788899999988888875 677889999999999888888777888999999999998 45544 55678899999
Q ss_pred EEeccCCCCCcccHHh-hcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccc-cCCCcchhH
Q 037847 280 HLDLSSTDITGLPQEL-KALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVL-CDGAEPLMK 357 (542)
Q Consensus 280 ~L~l~~~~i~~lp~~i-~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~~~~~~~~~ 357 (542)
+|++++|.++.+|..+ +++++|++|++++| .+..++...++.+++|++|++++|.+.+.......... -......+.
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~ 199 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLS 199 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCS
T ss_pred EEECCCCccCcCCHHHhcCCCCCcEEECCCC-ccCccChhhccCCCCCCEEECCCCcCCccccccccccceeeccccccc
Confidence 9999999998888774 78999999999988 55556554588889999999998876532100000000 000000011
Q ss_pred hhccccCCceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccchh
Q 037847 358 ELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEE 437 (542)
Q Consensus 358 ~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 437 (542)
.+....+|+.|+++.+..... . ......++.|++.++.... ...+..+++|++|++++|.+....+..+.
T Consensus 200 ~~~~~~~L~~L~l~~n~l~~~---~--~~~~~~L~~L~l~~n~l~~----~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~- 269 (390)
T 3o6n_A 200 TLAIPIAVEELDASHNSINVV---R--GPVNVELTILKLQHNNLTD----TAWLLNYPGLVEVDLSYNELEKIMYHPFV- 269 (390)
T ss_dssp EEECCSSCSEEECCSSCCCEE---E--CCCCSSCCEEECCSSCCCC----CGGGGGCTTCSEEECCSSCCCEEESGGGT-
T ss_pred ccCCCCcceEEECCCCeeeec---c--ccccccccEEECCCCCCcc----cHHHcCCCCccEEECCCCcCCCcChhHcc-
Confidence 112223444444443322111 0 0112356666666654321 24566778888888888888776554443
Q ss_pred hcccccccccccCEEEEccCCC-CCcchhhhccCcceEEEeccchhhhcccccccccccccCCcCCCCCccceeecccCC
Q 037847 438 VKKLFRNGFRNLNTVVLRSCRG-KDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGT 516 (542)
Q Consensus 438 ~~~~~~~~l~~L~~L~L~~c~~-~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 516 (542)
.+++|+.|++++|.+ ..+.....+++|++|+|++|.++.++. ....+++|+.|++.++.
T Consensus 270 -------~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~-------------~~~~l~~L~~L~L~~N~ 329 (390)
T 3o6n_A 270 -------KMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVER-------------NQPQFDRLENLYLDHNS 329 (390)
T ss_dssp -------TCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGG-------------GHHHHTTCSEEECCSSC
T ss_pred -------ccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecCc-------------cccccCcCCEEECCCCc
Confidence 378888888888888 434445678888888888888876643 45568889999998864
Q ss_pred cccccCCCCCCCCCcceEeeccCC
Q 037847 517 NLKSVYPNPQPFPKLKKIQAFHCR 540 (542)
Q Consensus 517 ~l~~~~~~~~~~p~L~~L~i~~C~ 540 (542)
+..++ ...+++|++|++++++
T Consensus 330 -i~~~~--~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 330 -IVTLK--LSTHHTLKNLTLSHND 350 (390)
T ss_dssp -CCCCC--CCTTCCCSEEECCSSC
T ss_pred -cceeC--chhhccCCEEEcCCCC
Confidence 56654 5678899999998865
No 5
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.92 E-value=1.2e-23 Score=217.00 Aligned_cols=136 Identities=22% Similarity=0.383 Sum_probs=87.3
Q ss_pred ecCcccccCCcccccccceEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCcc
Q 037847 191 RAGVKLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPS 270 (542)
Q Consensus 191 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~ 270 (542)
..+.....++.+..+.+++.|+++++.+..++.+.++++|++|++++|.+...++ +..+++|++|++++| .+..+|.
T Consensus 53 l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n-~l~~~~~ 129 (466)
T 1o6v_A 53 ADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN-QITDIDP 129 (466)
T ss_dssp CCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCGG
T ss_pred cCCCCCccCcchhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh--hcCCCCCCEEECCCC-CCCCChH
Confidence 3444555566666677788888888877777667777888888888877776665 677778888888777 5666663
Q ss_pred ccCCCCCCCEEeccCCCCCcccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCcc
Q 037847 271 GISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCG 335 (542)
Q Consensus 271 ~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~ 335 (542)
++.+++|++|++++|.+..+|. ++.+++|++|+++++ ...++. ++++++|++|++++|.
T Consensus 130 -~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~~--~~~~~~--~~~l~~L~~L~l~~n~ 188 (466)
T 1o6v_A 130 -LKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFGNQ--VTDLKP--LANLTTLERLDISSNK 188 (466)
T ss_dssp -GTTCTTCSEEEEEEEEECCCGG-GTTCTTCSEEEEEES--CCCCGG--GTTCTTCCEEECCSSC
T ss_pred -HcCCCCCCEEECCCCccCCChh-hccCCcccEeecCCc--ccCchh--hccCCCCCEEECcCCc
Confidence 7777777777777776666543 455555555554321 222222 4444555555554444
No 6
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=1.9e-24 Score=229.79 Aligned_cols=302 Identities=18% Similarity=0.161 Sum_probs=197.3
Q ss_pred ccccceEEEeecCCcCCCCC--CCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcC-ccccCCCCCCCE
Q 037847 204 EWEGAKRISLTANGIGSLSE--IPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTL-PSGISGLVSLHH 280 (542)
Q Consensus 204 ~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l-p~~i~~l~~L~~ 280 (542)
.+.+++.+++.++.+..+|. +..+++|++|++++|.+..+++..|+.+++|++|++++|. +..+ |..|+.+++|++
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCc-CCCCCHHHHcCCCCCCE
Confidence 34667777777777777764 5667778888888887777776667778888888888873 4444 344677888888
Q ss_pred EeccCCCCCcccHHh-hcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccc-cCCCcchhHh
Q 037847 281 LDLSSTDITGLPQEL-KALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVL-CDGAEPLMKE 358 (542)
Q Consensus 281 L~l~~~~i~~lp~~i-~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 358 (542)
|++++|.++.+|..+ +++++|++|++++| .+..++...++.+++|++|++++|.+.+.......+.. -......+..
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~ 206 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLST 206 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSE
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCC-cCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCcccc
Confidence 888888777777664 77788888888877 44445444477778888888887776532110000000 0000001111
Q ss_pred hccccCCceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccchhh
Q 037847 359 LLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEV 438 (542)
Q Consensus 359 l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 438 (542)
+....+|+.|+++.+...... ......++.|++.++.... ...+..+++|+.|++++|.+....+..+.
T Consensus 207 l~~~~~L~~L~ls~n~l~~~~-----~~~~~~L~~L~L~~n~l~~----~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~-- 275 (597)
T 3oja_B 207 LAIPIAVEELDASHNSINVVR-----GPVNVELTILKLQHNNLTD----TAWLLNYPGLVEVDLSYNELEKIMYHPFV-- 275 (597)
T ss_dssp EECCTTCSEEECCSSCCCEEE-----CSCCSCCCEEECCSSCCCC----CGGGGGCTTCSEEECCSSCCCEEESGGGT--
T ss_pred ccCCchhheeeccCCcccccc-----cccCCCCCEEECCCCCCCC----ChhhccCCCCCEEECCCCccCCCCHHHhc--
Confidence 223344555555544321110 0112356777776655322 24567788999999999988876555443
Q ss_pred cccccccccccCEEEEccCCC-CCcchhhhccCcceEEEeccchhhhcccccccccccccCCcCCCCCccceeecccCCc
Q 037847 439 KKLFRNGFRNLNTVVLRSCRG-KDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTN 517 (542)
Q Consensus 439 ~~~~~~~l~~L~~L~L~~c~~-~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 517 (542)
.+++|+.|+|++|.+ ..+.....+|+|++|+|++|.+..++. ....+++|+.|++.+|.
T Consensus 276 ------~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~-------------~~~~l~~L~~L~L~~N~- 335 (597)
T 3oja_B 276 ------KMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVER-------------NQPQFDRLENLYLDHNS- 335 (597)
T ss_dssp ------TCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCCGG-------------GHHHHTTCSEEECCSSC-
T ss_pred ------CccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCccCc-------------ccccCCCCCEEECCCCC-
Confidence 378899999999888 444445668899999999988886643 45678899999998874
Q ss_pred ccccCCCCCCCCCcceEeeccCC
Q 037847 518 LKSVYPNPQPFPKLKKIQAFHCR 540 (542)
Q Consensus 518 l~~~~~~~~~~p~L~~L~i~~C~ 540 (542)
+..++ ...+++|++|+++++|
T Consensus 336 l~~~~--~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 336 IVTLK--LSTHHTLKNLTLSHND 356 (597)
T ss_dssp CCCCC--CCTTCCCSEEECCSSC
T ss_pred CCCcC--hhhcCCCCEEEeeCCC
Confidence 55543 5678999999998875
No 7
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.91 E-value=1.3e-23 Score=217.51 Aligned_cols=308 Identities=21% Similarity=0.211 Sum_probs=224.1
Q ss_pred EecCcccccCCcccccccceEEEeecCCcCCCC--CCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCc
Q 037847 190 VRAGVKLTEAPKVEEWEGAKRISLTANGIGSLS--EIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPST 267 (542)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 267 (542)
.-.+..+..+|... ...++.|++.+|.+..++ .+.++++|++|++++|.+..+.+..|..+++|++|++++| .+..
T Consensus 17 ~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~ 94 (477)
T 2id5_A 17 LCHRKRFVAVPEGI-PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLKL 94 (477)
T ss_dssp ECCSCCCSSCCSCC-CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCS
T ss_pred EeCCCCcCcCCCCC-CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC-cCCc
Confidence 33445566666522 368999999999998874 5889999999999999998887777999999999999999 6777
Q ss_pred Ccc-ccCCCCCCCEEeccCCCCCcc-cHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCC
Q 037847 268 LPS-GISGLVSLHHLDLSSTDITGL-PQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEG 345 (542)
Q Consensus 268 lp~-~i~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 345 (542)
+|. .++.+.+|++|++++|.+..+ |..+.++++|++|++++| .+..++...+..+++|++|++++|.+.+.
T Consensus 95 ~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------ 167 (477)
T 2id5_A 95 IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN-DLVYISHRAFSGLNSLEQLTLEKCNLTSI------ 167 (477)
T ss_dssp CCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCT-TCCEECTTSSTTCTTCCEEEEESCCCSSC------
T ss_pred cCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCC-ccceeChhhccCCCCCCEEECCCCcCccc------
Confidence 775 478999999999999999885 667899999999999999 55555544588999999999999977532
Q ss_pred ccccCCCcchhHhhccccCCceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeeccc
Q 037847 346 NVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESC 425 (542)
Q Consensus 346 ~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 425 (542)
....+..+++|+.|+++.+...... .........++.|.+.++... ...........+|++|++++|
T Consensus 168 ---------~~~~l~~l~~L~~L~l~~n~i~~~~--~~~~~~l~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~n 234 (477)
T 2id5_A 168 ---------PTEALSHLHGLIVLRLRHLNINAIR--DYSFKRLYRLKVLEISHWPYL--DTMTPNCLYGLNLTSLSITHC 234 (477)
T ss_dssp ---------CHHHHTTCTTCCEEEEESCCCCEEC--TTCSCSCTTCCEEEEECCTTC--CEECTTTTTTCCCSEEEEESS
T ss_pred ---------ChhHhcccCCCcEEeCCCCcCcEeC--hhhcccCcccceeeCCCCccc--cccCcccccCccccEEECcCC
Confidence 2234677888888888866532211 011222355677777664421 111112223348888888888
Q ss_pred CccceeeccchhhcccccccccccCEEEEccCCC--CCcchhhhccCcceEEEeccchhhhcccccccccccccCCcCCC
Q 037847 426 NLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRG--KDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNF 503 (542)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~--~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~ 503 (542)
.+..++...+ ..+++|+.|+|++|.+ .....+..+++|++|+|++|.++.+.. .....
T Consensus 235 ~l~~~~~~~~--------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~------------~~~~~ 294 (477)
T 2id5_A 235 NLTAVPYLAV--------RHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEP------------YAFRG 294 (477)
T ss_dssp CCCSCCHHHH--------TTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECT------------TTBTT
T ss_pred cccccCHHHh--------cCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECH------------HHhcC
Confidence 8776543333 3378888888888888 223346788888888888888877643 35667
Q ss_pred CCccceeecccCCcccccCCC-CCCCCCcceEeeccCC
Q 037847 504 FPRLEYLTMWRGTNLKSVYPN-PQPFPKLKKIQAFHCR 540 (542)
Q Consensus 504 ~~~L~~L~l~~c~~l~~~~~~-~~~~p~L~~L~i~~C~ 540 (542)
+++|+.|++.++ .+..++.. ...+++|++|++++.|
T Consensus 295 l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 295 LNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp CTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred cccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCCC
Confidence 888999999886 56666543 3567888999888764
No 8
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.91 E-value=1e-23 Score=207.48 Aligned_cols=295 Identities=16% Similarity=0.130 Sum_probs=206.8
Q ss_pred cceEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcC-ccccCCCCCCCEEeccC
Q 037847 207 GAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTL-PSGISGLVSLHHLDLSS 285 (542)
Q Consensus 207 ~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l-p~~i~~l~~L~~L~l~~ 285 (542)
.++.+++.++.+..+|... .+++++|++++|.+..+++..+..+++|++|++++| .+..+ |..++.+++|++|++++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGSTTCTTCCEEECCS
T ss_pred cCCEEECCCCCccccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCC-ccCccCHhHhhCcCCCCEEECCC
Confidence 5778888888888776532 468888899888888887766888888999999888 44444 77788888899999988
Q ss_pred CCCCcccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCC
Q 037847 286 TDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHL 365 (542)
Q Consensus 286 ~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 365 (542)
|.++.+|..+. ++|++|++++| .+..+|...+.++++|++|++++|.+... ......+..+ +|
T Consensus 112 n~l~~l~~~~~--~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~~-------------~~~~~~~~~l-~L 174 (332)
T 2ft3_A 112 NHLVEIPPNLP--SSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGNPLENS-------------GFEPGAFDGL-KL 174 (332)
T ss_dssp SCCCSCCSSCC--TTCCEEECCSS-CCCCCCSGGGSSCSSCCEEECCSCCCBGG-------------GSCTTSSCSC-CC
T ss_pred CcCCccCcccc--ccCCEEECCCC-ccCccCHhHhCCCccCCEEECCCCccccC-------------CCCcccccCC-cc
Confidence 88888887765 78889998888 56667766678888899998888876421 0111223444 67
Q ss_pred ceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccchhhccccccc
Q 037847 366 NVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNG 445 (542)
Q Consensus 366 ~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 445 (542)
+.++++.+.... +.. .....++.|++.+... .......+..+++|++|++++|.+..++...+ ..
T Consensus 175 ~~L~l~~n~l~~---l~~--~~~~~L~~L~l~~n~i--~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~--------~~ 239 (332)
T 2ft3_A 175 NYLRISEAKLTG---IPK--DLPETLNELHLDHNKI--QAIELEDLLRYSKLYRLGLGHNQIRMIENGSL--------SF 239 (332)
T ss_dssp SCCBCCSSBCSS---CCS--SSCSSCSCCBCCSSCC--CCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGG--------GG
T ss_pred CEEECcCCCCCc---cCc--cccCCCCEEECCCCcC--CccCHHHhcCCCCCCEEECCCCcCCcCChhHh--------hC
Confidence 777776654322 111 1124567777766542 12223456778999999999999988655444 34
Q ss_pred ccccCEEEEccCCC-CCcchhhhccCcceEEEeccchhhhcccccccccccccCCcCCCCCccceeecccCCccc-ccC-
Q 037847 446 FRNLNTVVLRSCRG-KDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLK-SVY- 522 (542)
Q Consensus 446 l~~L~~L~L~~c~~-~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~-~~~- 522 (542)
+++|+.|++++|.+ ..+..+..+++|++|++++|.++.++...+... .....+++|+.|.+.+++... ++.
T Consensus 240 l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~------~~~~~~~~l~~L~l~~N~~~~~~~~~ 313 (332)
T 2ft3_A 240 LPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPV------GFGVKRAYYNGISLFNNPVPYWEVQP 313 (332)
T ss_dssp CTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCS------SCCSSSCCBSEEECCSSSSCGGGSCG
T ss_pred CCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHcccc------ccccccccccceEeecCcccccccCc
Confidence 89999999999999 666678999999999999999998865332211 012237889999999987321 222
Q ss_pred CCCCCCCCcceEeeccCCC
Q 037847 523 PNPQPFPKLKKIQAFHCRQ 541 (542)
Q Consensus 523 ~~~~~~p~L~~L~i~~C~~ 541 (542)
.....+++|+.++++++.+
T Consensus 314 ~~~~~l~~L~~l~l~~n~~ 332 (332)
T 2ft3_A 314 ATFRCVTDRLAIQFGNYKK 332 (332)
T ss_dssp GGGTTBCCSTTEEC-----
T ss_pred ccccccchhhhhhcccccC
Confidence 2344578999999998753
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.91 E-value=2.9e-23 Score=221.66 Aligned_cols=151 Identities=26% Similarity=0.263 Sum_probs=123.5
Q ss_pred EEecCcccccCCcccccccceEEEeecCCcCCCC--CCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCC
Q 037847 189 LVRAGVKLTEAPKVEEWEGAKRISLTANGIGSLS--EIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPS 266 (542)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 266 (542)
+...+..+..+|... ..+++.|++++|.+..++ .+.++++|++|++++|.++.+++..|.++++|++|++++|. +.
T Consensus 16 ~~c~~~~l~~ip~~~-~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~-l~ 93 (606)
T 3vq2_A 16 YQCMDQKLSKVPDDI-PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP-IQ 93 (606)
T ss_dssp EECTTSCCSSCCTTS-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CC
T ss_pred eEccCCCcccCCCCC-CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCc-cc
Confidence 444556667777532 278999999999998875 48899999999999999988888778999999999999994 55
Q ss_pred cC-ccccCCCCCCCEEeccCCCCCccc-HHhhcCCCCCEEeccCCcccC-ccchhhcCCCCCCcEEeccCccccccccC
Q 037847 267 TL-PSGISGLVSLHHLDLSSTDITGLP-QELKALEKLRYLNLDYAFHLS-IIPHQLISCFSKLEVLRLCGCGRFGVIKG 342 (542)
Q Consensus 267 ~l-p~~i~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~~~~~~-~lp~~~~~~l~~L~~L~l~~~~~~~~~~~ 342 (542)
.+ |..|+.+.+|++|++++|.++.+| ..++++++|++|++++|.... .+|.. ++++++|++|++++|.+.+..|.
T Consensus 94 ~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~~~~~ 171 (606)
T 3vq2_A 94 SFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNYIQTITVN 171 (606)
T ss_dssp CCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG-GGTCTTCCEEECCSSCCCEECTT
T ss_pred ccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHh-HhhcCCCCEEEccCCcceecChh
Confidence 44 888999999999999999998876 678999999999999994433 46776 88999999999999987765443
No 10
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.91 E-value=7.1e-24 Score=230.91 Aligned_cols=329 Identities=12% Similarity=0.038 Sum_probs=193.3
Q ss_pred ccccccceEEEeecCCcCC------------------CCC-CC--CCCCccEEEccCcccccccchhhccCCCccEEEec
Q 037847 202 VEEWEGAKRISLTANGIGS------------------LSE-IP--TCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLR 260 (542)
Q Consensus 202 ~~~~~~l~~l~l~~~~~~~------------------~~~-~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 260 (542)
+..+.+++.|++++|.+.. +|. +. ++++|++|++++|.+....+..++.+++|++|+++
T Consensus 444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls 523 (876)
T 4ecn_A 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIA 523 (876)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECT
T ss_pred HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECc
Confidence 6677889999999999887 764 55 89999999999998766555668999999999999
Q ss_pred CCCCCC--cCccccCCCC-------CCCEEeccCCCCCcccH--HhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEE
Q 037847 261 GNFPPS--TLPSGISGLV-------SLHHLDLSSTDITGLPQ--ELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVL 329 (542)
Q Consensus 261 ~~~~~~--~lp~~i~~l~-------~L~~L~l~~~~i~~lp~--~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L 329 (542)
+|..+. .+|..++.+. +|++|++++|.++.+|. .++++++|++|++++| .+..+| . ++++++|++|
T Consensus 524 ~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N-~l~~lp-~-~~~L~~L~~L 600 (876)
T 4ecn_A 524 CNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHN-KVRHLE-A-FGTNVKLTDL 600 (876)
T ss_dssp TCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTS-CCCBCC-C-CCTTSEESEE
T ss_pred CCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCC-Ccccch-h-hcCCCcceEE
Confidence 995244 5787666554 99999999999999998 8999999999999998 455888 3 8899999999
Q ss_pred eccCccccccccCCCCccc---------cCCCcchhHhhccc--cCCceeeeEecchHHH-HHhhcCch--hhccceeEE
Q 037847 330 RLCGCGRFGVIKGKEGNVL---------CDGAEPLMKELLGL--KHLNVLSWSFGSSLAV-QKFLKYPK--LVSITQSVW 395 (542)
Q Consensus 330 ~l~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~~L--~~L~~l~~~~~~~~~~-~~l~~~~~--~~~~l~~l~ 395 (542)
++++|.+. .+|....... .......+..+..+ ++|+.|+++.+..... ..+..... ....++.|+
T Consensus 601 ~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~ 679 (876)
T 4ecn_A 601 KLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVT 679 (876)
T ss_dssp ECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEE
T ss_pred ECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEE
Confidence 99998876 4443211100 00000111111122 1244444444432110 00000000 011345555
Q ss_pred eccccCCCCCceecccccccccceeeecccCccceeeccchhhcccccccccccCEEEEccCCC-CCcchhh--hccCcc
Q 037847 396 VECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRG-KDLTWLV--FVQNLK 472 (542)
Q Consensus 396 l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~-~~~~~l~--~l~~L~ 472 (542)
+.++... ......+..+++|+.|++++|.+..++...+.... ....++++|+.|+|++|.+ ..+..+. .+++|+
T Consensus 680 Ls~N~L~--~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~-~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~ 756 (876)
T 4ecn_A 680 LSYNEIQ--KFPTELFATGSPISTIILSNNLMTSIPENSLKPKD-GNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLS 756 (876)
T ss_dssp CCSSCCC--SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTT-SCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCC
T ss_pred ccCCcCC--ccCHHHHccCCCCCEEECCCCcCCccChHHhcccc-ccccccCCccEEECCCCCCccchHHhhhccCCCcC
Confidence 5544321 11111223456777777777766654433221100 0011234677777777766 4444454 667777
Q ss_pred eEEEeccchhhhcccc-cc----------------cccccccCCcCCCCCccceeecccCCcccccCCCCCCCCCcceEe
Q 037847 473 QLNMQGFTMEEIISVE-KL----------------SDISEVIGSEHNFFPRLEYLTMWRGTNLKSVYPNPQPFPKLKKIQ 535 (542)
Q Consensus 473 ~L~L~~~~l~~~~~~~-~~----------------~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~p~L~~L~ 535 (542)
.|+|++|.++.++..- .+ ..+.+..|.....+++|+.|++.+|. +..+|... +++|+.|+
T Consensus 757 ~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~-L~~Ip~~l--~~~L~~Ld 833 (876)
T 4ecn_A 757 NMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND-IRKVDEKL--TPQLYILD 833 (876)
T ss_dssp EEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSCC--CSSSCEEE
T ss_pred EEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCC-CCccCHhh--cCCCCEEE
Confidence 7777776666543200 00 00011112344456666666666653 35555442 35677777
Q ss_pred eccCC
Q 037847 536 AFHCR 540 (542)
Q Consensus 536 i~~C~ 540 (542)
+++|+
T Consensus 834 Ls~N~ 838 (876)
T 4ecn_A 834 IADNP 838 (876)
T ss_dssp CCSCT
T ss_pred CCCCC
Confidence 76665
No 11
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.91 E-value=2.5e-24 Score=230.18 Aligned_cols=134 Identities=15% Similarity=0.153 Sum_probs=78.6
Q ss_pred ccccccceEEEeecCCcCC------------------CCC-CC--CCCCccEEEccCcccccccchhhccCCCccEEEec
Q 037847 202 VEEWEGAKRISLTANGIGS------------------LSE-IP--TCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLR 260 (542)
Q Consensus 202 ~~~~~~l~~l~l~~~~~~~------------------~~~-~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 260 (542)
+..+.+++.|++.+|.+.. +|. +. ++++|++|++++|.+....+..++.+++|++|+++
T Consensus 202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 281 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVA 281 (636)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECT
T ss_pred HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECc
Confidence 4455666666666666665 543 44 56666666666665544444446666666666666
Q ss_pred CCCCCC--cCccccCCC------CCCCEEeccCCCCCcccH--HhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEe
Q 037847 261 GNFPPS--TLPSGISGL------VSLHHLDLSSTDITGLPQ--ELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLR 330 (542)
Q Consensus 261 ~~~~~~--~lp~~i~~l------~~L~~L~l~~~~i~~lp~--~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~ 330 (542)
+|..+. .+|..++.+ ++|++|++++|.++.+|. .++++++|++|++++|.....+| . ++.+++|++|+
T Consensus 282 ~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~-~~~l~~L~~L~ 359 (636)
T 4eco_A 282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-A-FGSEIKLASLN 359 (636)
T ss_dssp TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-C-CEEEEEESEEE
T ss_pred CCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-h-hCCCCCCCEEE
Confidence 663133 456555554 666666666666666666 66666666666666663322555 2 55555666666
Q ss_pred ccCcccc
Q 037847 331 LCGCGRF 337 (542)
Q Consensus 331 l~~~~~~ 337 (542)
+++|.+.
T Consensus 360 L~~N~l~ 366 (636)
T 4eco_A 360 LAYNQIT 366 (636)
T ss_dssp CCSSEEE
T ss_pred CCCCccc
Confidence 6555543
No 12
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.91 E-value=6.8e-23 Score=211.31 Aligned_cols=311 Identities=18% Similarity=0.217 Sum_probs=184.5
Q ss_pred eEEEecCcccccCCcccccccceEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCC
Q 037847 187 NFLVRAGVKLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPS 266 (542)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 266 (542)
..+...+..+..++.+..+.+++.|++.++.+..++.+.++++|++|++++|.+..+++ +..+++|++|++++| .+.
T Consensus 71 ~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n-~l~ 147 (466)
T 1o6v_A 71 TQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSN-TIS 147 (466)
T ss_dssp CEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEE-EEC
T ss_pred CEEECCCCccCCchhhhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCC-ccC
Confidence 34444555566666666777788888888877777667778888888888887776655 677788888888777 455
Q ss_pred cCccccCCCCCCCEEeccCCCCCcccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCC-
Q 037847 267 TLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEG- 345 (542)
Q Consensus 267 ~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~- 345 (542)
.+| .++.+.+|++|++++ .+..++. +.++++|++|++++| .+..++. +..+++|++|++++|.+.+..|....
T Consensus 148 ~~~-~~~~l~~L~~L~l~~-~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~~l~ 221 (466)
T 1o6v_A 148 DIS-ALSGLTSLQQLSFGN-QVTDLKP-LANLTTLERLDISSN-KVSDISV--LAKLTNLESLIATNNQISDITPLGILT 221 (466)
T ss_dssp CCG-GGTTCTTCSEEEEEE-SCCCCGG-GTTCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECCSSCCCCCGGGGGCT
T ss_pred CCh-hhccCCcccEeecCC-cccCchh-hccCCCCCEEECcCC-cCCCChh--hccCCCCCEEEecCCcccccccccccC
Confidence 555 355666666665542 3333332 555555555555555 3444433 45555555555555554332210000
Q ss_pred c----cccCCCcchhHhhccccCCceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceee
Q 037847 346 N----VLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELE 421 (542)
Q Consensus 346 ~----~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~ 421 (542)
+ .........+..+..+++|+.|+++.+....... ......++.|.+.++.... ...+..+++|++|+
T Consensus 222 ~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~----~~~~~~l~~L~~L~ 293 (466)
T 1o6v_A 222 NLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP----LSGLTKLTELKLGANQISN----ISPLAGLTALTNLE 293 (466)
T ss_dssp TCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG----GTTCTTCSEEECCSSCCCC----CGGGTTCTTCSEEE
T ss_pred CCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh----hhcCCCCCEEECCCCccCc----cccccCCCccCeEE
Confidence 0 0000000111345566666666666554322211 1122445666665554211 11255667777777
Q ss_pred ecccCccceeeccchhhcccccccccccCEEEEccCCCCCcchhhhccCcceEEEeccchhhhcccccccccccccCCcC
Q 037847 422 LESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEH 501 (542)
Q Consensus 422 l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~ 501 (542)
+++|.+..+++ ...+++|+.|++++|.+...+++..+++|++|++++|.++++. ..
T Consensus 294 L~~n~l~~~~~----------~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~--------------~l 349 (466)
T 1o6v_A 294 LNENQLEDISP----------ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVS--------------SL 349 (466)
T ss_dssp CCSSCCSCCGG----------GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCCG--------------GG
T ss_pred cCCCcccCchh----------hcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCccCCch--------------hh
Confidence 77776665321 2347788888888887744444777888888888887776652 44
Q ss_pred CCCCccceeecccCCcccccCCCCCCCCCcceEeeccCC
Q 037847 502 NFFPRLEYLTMWRGTNLKSVYPNPQPFPKLKKIQAFHCR 540 (542)
Q Consensus 502 ~~~~~L~~L~l~~c~~l~~~~~~~~~~p~L~~L~i~~C~ 540 (542)
..+++|+.|++.+|. +..++. ...+++|++|++++|+
T Consensus 350 ~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 350 ANLTNINWLSAGHNQ-ISDLTP-LANLTRITQLGLNDQA 386 (466)
T ss_dssp TTCTTCCEEECCSSC-CCBCGG-GTTCTTCCEEECCCEE
T ss_pred ccCCCCCEEeCCCCc-cCccch-hhcCCCCCEEeccCCc
Confidence 568888889888874 455443 6678889999888773
No 13
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.90 E-value=6.9e-23 Score=201.42 Aligned_cols=295 Identities=16% Similarity=0.142 Sum_probs=207.3
Q ss_pred ccceEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccC
Q 037847 206 EGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSS 285 (542)
Q Consensus 206 ~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~ 285 (542)
.+++.+++.++.+..+|.. -.++++.|++++|.++.+++..+..+++|++|++++|......|..++.+++|++|++++
T Consensus 31 c~l~~l~~~~~~l~~lp~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKD-LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp EETTEEECTTSCCCSCCCS-CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCCeEEEecCCCccccCcc-CCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 3567778887777777642 236788888888888887776688888888888888843333477788888888888888
Q ss_pred CCCCcccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCC
Q 037847 286 TDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHL 365 (542)
Q Consensus 286 ~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 365 (542)
|.++.+|..+. ++|++|++++| .+..++...+.++++|++|++++|.+.. .......+.++++|
T Consensus 110 n~l~~l~~~~~--~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~-------------~~~~~~~~~~l~~L 173 (330)
T 1xku_A 110 NQLKELPEKMP--KTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNPLKS-------------SGIENGAFQGMKKL 173 (330)
T ss_dssp SCCSBCCSSCC--TTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSSCCCG-------------GGBCTTGGGGCTTC
T ss_pred CcCCccChhhc--ccccEEECCCC-cccccCHhHhcCCccccEEECCCCcCCc-------------cCcChhhccCCCCc
Confidence 88888877654 68888888888 5566666557888888888888877632 11223446677788
Q ss_pred ceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccchhhccccccc
Q 037847 366 NVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNG 445 (542)
Q Consensus 366 ~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 445 (542)
+.|+++.+.... +.. .....++.|++.++.. .......+..+++|++|++++|.+..++...+ ..
T Consensus 174 ~~L~l~~n~l~~---l~~--~~~~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--------~~ 238 (330)
T 1xku_A 174 SYIRIADTNITT---IPQ--GLPPSLTELHLDGNKI--TKVDAASLKGLNNLAKLGLSFNSISAVDNGSL--------AN 238 (330)
T ss_dssp CEEECCSSCCCS---CCS--SCCTTCSEEECTTSCC--CEECTGGGTTCTTCCEEECCSSCCCEECTTTG--------GG
T ss_pred CEEECCCCcccc---CCc--cccccCCEEECCCCcC--CccCHHHhcCCCCCCEEECCCCcCceeChhhc--------cC
Confidence 888877655321 111 1125677777766542 12223457788999999999999987655444 33
Q ss_pred ccccCEEEEccCCC-CCcchhhhccCcceEEEeccchhhhcccccccccccccCCcCCCCCccceeecccCCcccccCC-
Q 037847 446 FRNLNTVVLRSCRG-KDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLKSVYP- 523 (542)
Q Consensus 446 l~~L~~L~L~~c~~-~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~- 523 (542)
+++|++|++++|.+ ..+..+..+++|++|++++|.++.++...+... .....+++|+.|++.+.+ +..+..
T Consensus 239 l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~------~~~~~~~~l~~l~l~~N~-~~~~~i~ 311 (330)
T 1xku_A 239 TPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPP------GYNTKKASYSGVSLFSNP-VQYWEIQ 311 (330)
T ss_dssp STTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCS------SCCTTSCCCSEEECCSSS-SCGGGSC
T ss_pred CCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhcCCc------ccccccccccceEeecCc-ccccccC
Confidence 89999999999999 666778899999999999999998875433221 122346889999999876 333222
Q ss_pred --CCCCCCCcceEeeccC
Q 037847 524 --NPQPFPKLKKIQAFHC 539 (542)
Q Consensus 524 --~~~~~p~L~~L~i~~C 539 (542)
....+++|+.++++++
T Consensus 312 ~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 312 PSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp GGGGTTCCCGGGEEC---
T ss_pred ccccccccceeEEEeccc
Confidence 3345778888888775
No 14
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.90 E-value=7.1e-24 Score=226.67 Aligned_cols=296 Identities=14% Similarity=0.139 Sum_probs=203.5
Q ss_pred CCCCCCccEEEccCccccc------------------ccchhhc--cCCCccEEEecCCCCCCcCccccCCCCCCCEEec
Q 037847 224 IPTCPRLVTLLLDGNRIEE------------------ITDGFFQ--SLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDL 283 (542)
Q Consensus 224 ~~~~~~L~~L~l~~~~~~~------------------~~~~~~~--~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l 283 (542)
+.++++|++|++++|.++. +|.. ++ .+++|++|++++|.....+|..++++++|++|++
T Consensus 202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~-l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 280 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTED-LKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINV 280 (636)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEEC
T ss_pred HhcccCCCEEECcCCccccccccccccccccchhcccCchh-hhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEEC
Confidence 6789999999999999988 6655 77 9999999999999778899999999999999999
Q ss_pred cCCC-CCc--ccHHhhcC------CCCCEEeccCCcccCccch--hhcCCCCCCcEEeccCccccccccCCCCcc-----
Q 037847 284 SSTD-ITG--LPQELKAL------EKLRYLNLDYAFHLSIIPH--QLISCFSKLEVLRLCGCGRFGVIKGKEGNV----- 347 (542)
Q Consensus 284 ~~~~-i~~--lp~~i~~l------~~L~~L~l~~~~~~~~lp~--~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~----- 347 (542)
++|. ++. +|..++++ ++|++|++++| .+..+|. . ++++++|++|++++|.+.+.+| .....
T Consensus 281 s~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~ip~~~~-l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~ 357 (636)
T 4eco_A 281 ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKTFPVETS-LQKMKKLGMLECLYNQLEGKLP-AFGSEIKLAS 357 (636)
T ss_dssp TTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCSSCCCHHH-HTTCTTCCEEECCSCCCEEECC-CCEEEEEESE
T ss_pred cCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCCccCchhh-hccCCCCCEEeCcCCcCccchh-hhCCCCCCCE
Confidence 9998 885 99999887 99999999999 5668997 5 8999999999999999987777 32211
Q ss_pred ---ccCCCcchhHhhccccC-CceeeeEecchHHHHHhhcCchhh--ccceeEEeccccCCCC-----------------
Q 037847 348 ---LCDGAEPLMKELLGLKH-LNVLSWSFGSSLAVQKFLKYPKLV--SITQSVWVECGTYTRP----------------- 404 (542)
Q Consensus 348 ---~~~~~~~~~~~l~~L~~-L~~l~~~~~~~~~~~~l~~~~~~~--~~l~~l~l~~~~~~~~----------------- 404 (542)
........+..+..+++ |+.|+++.+.... +....... ..++.+++..+.....
T Consensus 358 L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~---lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~ 434 (636)
T 4eco_A 358 LNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY---IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGIN 434 (636)
T ss_dssp EECCSSEEEECCTTSEEECTTCCEEECCSSCCSS---CCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCC
T ss_pred EECCCCccccccHhhhhhcccCcEEEccCCcCcc---cchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCC
Confidence 11112234455777888 8888888765332 22221111 1455555554432110
Q ss_pred ------------CceecccccccccceeeecccCccceeeccchhhcccccccccccCEEEEccCCC-CCcchhh--hcc
Q 037847 405 ------------PFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRG-KDLTWLV--FVQ 469 (542)
Q Consensus 405 ------------~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~-~~~~~l~--~l~ 469 (542)
......+..+++|++|++++|.+..++...+.... .....+++|+.|++++|.+ ..+..+. .++
T Consensus 435 L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~-~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~ 513 (636)
T 4eco_A 435 VSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDEN-ENFKNTYLLTSIDLRFNKLTKLSDDFRATTLP 513 (636)
T ss_dssp EEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETT-EECTTGGGCCEEECCSSCCCBCCGGGSTTTCT
T ss_pred CCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhcccc-ccccccCCccEEECcCCcCCccChhhhhccCC
Confidence 00000112234455555555554433322211000 0001123888888888888 5555555 788
Q ss_pred CcceEEEeccchhhhcccccccccccccCCcCCCCCccceeeccc------CCcccccCCCCCCCCCcceEeeccCC
Q 037847 470 NLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWR------GTNLKSVYPNPQPFPKLKKIQAFHCR 540 (542)
Q Consensus 470 ~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~------c~~l~~~~~~~~~~p~L~~L~i~~C~ 540 (542)
+|++|+|++|.++.++. ....+++|+.|++.+ +.-...+|.....+++|++|++++|.
T Consensus 514 ~L~~L~Ls~N~l~~ip~-------------~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 577 (636)
T 4eco_A 514 YLVGIDLSYNSFSKFPT-------------QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND 577 (636)
T ss_dssp TCCEEECCSSCCSSCCC-------------GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC
T ss_pred CcCEEECCCCCCCCcCh-------------hhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCc
Confidence 88888888888877532 566789999999954 33345666677778999999998874
No 15
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.90 E-value=4.2e-23 Score=216.19 Aligned_cols=141 Identities=23% Similarity=0.287 Sum_probs=116.1
Q ss_pred EEEecCcccccCCcccccccceEEEeecCCcCCCC--CCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCC
Q 037847 188 FLVRAGVKLTEAPKVEEWEGAKRISLTANGIGSLS--EIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPP 265 (542)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 265 (542)
.+...+..+..+|.... .++++|++++|.+..++ .+.++++|++|++++|.++.+++..|..+++|++|++++| .+
T Consensus 4 ~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l 81 (520)
T 2z7x_B 4 LVDRSKNGLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN-KL 81 (520)
T ss_dssp EEECTTSCCSSCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS-CC
T ss_pred eEecCCCCccccccccc-ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC-ce
Confidence 34445566677775333 78999999999998875 4889999999999999999887777999999999999999 67
Q ss_pred CcCccccCCCCCCCEEeccCCCCCc--ccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCC--cEEeccCccc
Q 037847 266 STLPSGISGLVSLHHLDLSSTDITG--LPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKL--EVLRLCGCGR 336 (542)
Q Consensus 266 ~~lp~~i~~l~~L~~L~l~~~~i~~--lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L--~~L~l~~~~~ 336 (542)
..+|.. .+.+|++|++++|.++. +|..++++++|++|++++|. +.. . .+..+++| ++|++++|.+
T Consensus 82 ~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~--~-~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 82 VKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEK--S-SVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCG--G-GGGGGTTSCEEEEEEEECTT
T ss_pred eecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcc-cch--h-hccccccceeeEEEeecccc
Confidence 788876 89999999999999987 57899999999999999984 433 1 25666677 8888888776
No 16
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.90 E-value=4e-23 Score=218.87 Aligned_cols=144 Identities=30% Similarity=0.367 Sum_probs=94.6
Q ss_pred cCcccccCCcccccccceEEEeecCCcCCCC--CCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcC-
Q 037847 192 AGVKLTEAPKVEEWEGAKRISLTANGIGSLS--EIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTL- 268 (542)
Q Consensus 192 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l- 268 (542)
.+.++..+|.. -...+++|++++|.+..++ .+.++++|++|++++|.+..+++..|..+++|++|++++| .+..+
T Consensus 15 ~~~~l~~ip~~-l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~ 92 (570)
T 2z63_A 15 MELNFYKIPDN-LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLA 92 (570)
T ss_dssp CSSCCSSCCSS-SCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEEC
T ss_pred CCCCccccCCC-ccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC-cCCccC
Confidence 34445555542 1246777777777776654 4677777777777777777766666777777777777777 34444
Q ss_pred ccccCCCCCCCEEeccCCCCCcccH-HhhcCCCCCEEeccCCcccC-ccchhhcCCCCCCcEEeccCccccc
Q 037847 269 PSGISGLVSLHHLDLSSTDITGLPQ-ELKALEKLRYLNLDYAFHLS-IIPHQLISCFSKLEVLRLCGCGRFG 338 (542)
Q Consensus 269 p~~i~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~~~-~lp~~~~~~l~~L~~L~l~~~~~~~ 338 (542)
|..|+.+.+|++|++++|.++.+|. .++++++|++|++++|.... .+|.. ++++++|++|++++|.+.+
T Consensus 93 ~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~l~~n~l~~ 163 (570)
T 2z63_A 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQS 163 (570)
T ss_dssp TTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECTTSCCCE
T ss_pred HhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhh-hcccCCCCEEeCcCCccce
Confidence 3567777777777777777776654 46777777777777773222 35655 6677777777777766544
No 17
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.90 E-value=4.6e-25 Score=231.13 Aligned_cols=163 Identities=15% Similarity=0.206 Sum_probs=130.7
Q ss_pred CeeecCCCChhhHHHHHHHHhccccCCCCCCHHHHHHHHHHHhCCChhHHHHHHHHHhcCCChhHHHHHHHHHhcccCCC
Q 037847 4 EKLEVYSLAHDKAWELFQEMVERSTLDSHTSIPELAETLARECGGLPLALKIVGRAMKSQRKVGDWKRAINKMRTSASKF 83 (542)
Q Consensus 4 ~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~kc~GlPlai~~ig~~L~~~~~~~~W~~~~~~l~~~~~~~ 83 (542)
.+|+|++|+++|||+||+++||... .++++.+++.+|+++|+|+||||+++|+.|+.+ + |+.+ +.+.+..+..
T Consensus 286 ~~~~l~~L~~~ea~~Lf~~~a~~~~--~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~---w~~~-~~l~~~l~~~ 358 (549)
T 2a5y_B 286 EFIEVTSLEIDECYDFLEAYGMPMP--VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T---FEKM-AQLNNKLESR 358 (549)
T ss_dssp EEEECCCCCHHHHHHHHHHTSCCCC----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S---HHHH-HHHHHHHHHH
T ss_pred eEEECCCCCHHHHHHHHHHHhcCCC--CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h---HHHH-HHhHHHhhcc
Confidence 5799999999999999999998664 357889999999999999999999999999773 3 5443 3444332221
Q ss_pred CCChHHHHHHHHhhcCCCCchhhhHHHh-----------hhccCCCCcccChHHHHHHHHHc--CCcccc-------chh
Q 037847 84 SGMKEEVFSRLKFSYDSLSTDELRSCLL-----------YCYLYPEDYEIPKRELIDYWISE--GFVYDF-------DDG 143 (542)
Q Consensus 84 ~~~~~~~~~~l~~sy~~L~~~~~k~cfl-----------~~~~fp~~~~~~~~~Li~~w~a~--g~i~~~-------~~~ 143 (542)
. ..++..++++||++||+ ++|.||+ |||+||+++.|+ +++|+|+ ||+... +++
T Consensus 359 ~--~~~i~~~l~~Sy~~L~~-~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~ 431 (549)
T 2a5y_B 359 G--LVGVECITPYSYKSLAM-ALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVA 431 (549)
T ss_dssp C--SSTTCCCSSSSSSSHHH-HHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHH
T ss_pred c--HHHHHHHHhcccccccH-HHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHH
Confidence 1 12678899999999999 8999999 999999999998 8999999 999643 455
Q ss_pred chHHHHHHHhcccccc---CCCeEEeehHHHHHHHHHHccc
Q 037847 144 CDFIDDLLQACLLEEE---GDDHVKMHDMIREMSLWIACTV 181 (542)
Q Consensus 144 ~~~~~~L~~~~l~~~~---~~~~~~mhdl~~~~~~~i~~~~ 181 (542)
+ ||++|+++||++.. ....|+|||++|++|+.+++.+
T Consensus 432 ~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~ 471 (549)
T 2a5y_B 432 D-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQ 471 (549)
T ss_dssp H-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTH
T ss_pred H-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHH
Confidence 5 99999999999974 4568999999999999887654
No 18
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.90 E-value=1.8e-23 Score=228.65 Aligned_cols=318 Identities=17% Similarity=0.140 Sum_probs=161.6
Q ss_pred cCcccccCCcccccccceEEEeecCCcCC-CCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcC--
Q 037847 192 AGVKLTEAPKVEEWEGAKRISLTANGIGS-LSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTL-- 268 (542)
Q Consensus 192 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l-- 268 (542)
.+..+........+.+++.|++.+|.+.. +|.+.++++|++|++++|.+....+..+..+++|++|++++|.....+
T Consensus 186 s~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~ 265 (768)
T 3rgz_A 186 SGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP 265 (768)
T ss_dssp CSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCC
T ss_pred CCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCc
Confidence 33344444444566777778887777765 455777777888888877776555555777777777777777433233
Q ss_pred --------------------ccccCCC-CCCCEEeccCCCCCc-ccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCC
Q 037847 269 --------------------PSGISGL-VSLHHLDLSSTDITG-LPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKL 326 (542)
Q Consensus 269 --------------------p~~i~~l-~~L~~L~l~~~~i~~-lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L 326 (542)
|..++.+ ++|++|++++|.++. +|..++++++|++|++++|.....+|...++++++|
T Consensus 266 ~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L 345 (768)
T 3rgz_A 266 LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGL 345 (768)
T ss_dssp CCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTC
T ss_pred cccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCC
Confidence 3333332 444444444444432 344444444444444444432224443334444445
Q ss_pred cEEeccCccccccccCCCCccccCCCcchhHhhcccc-CCceeeeEecchHH--HHHhhcCchhhccceeEEeccccCCC
Q 037847 327 EVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLK-HLNVLSWSFGSSLA--VQKFLKYPKLVSITQSVWVECGTYTR 403 (542)
Q Consensus 327 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~-~L~~l~~~~~~~~~--~~~l~~~~~~~~~l~~l~l~~~~~~~ 403 (542)
++|++++|.+.+.+|. .+..+. +|+.|+++.+.... ...+ .......++.+++.++...
T Consensus 346 ~~L~Ls~n~l~~~~p~---------------~l~~l~~~L~~L~Ls~N~l~~~~~~~~--~~~~~~~L~~L~L~~n~l~- 407 (768)
T 3rgz_A 346 KVLDLSFNEFSGELPE---------------SLTNLSASLLTLDLSSNNFSGPILPNL--CQNPKNTLQELYLQNNGFT- 407 (768)
T ss_dssp CEEECCSSEEEECCCT---------------THHHHTTTCSEEECCSSEEEEECCTTT--TCSTTCCCCEEECCSSEEE-
T ss_pred CEEeCcCCccCccccH---------------HHHhhhcCCcEEEccCCCcCCCcChhh--hhcccCCccEEECCCCccc-
Confidence 5555444444333222 122222 33333333222100 0000 0000123344444333210
Q ss_pred CCceecccccccccceeeecccCccceeeccchhhc--------------c--cccccccccCEEEEccCCC--CCcchh
Q 037847 404 PPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVK--------------K--LFRNGFRNLNTVVLRSCRG--KDLTWL 465 (542)
Q Consensus 404 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~--------------~--~~~~~l~~L~~L~L~~c~~--~~~~~l 465 (542)
......+..+++|++|++++|.+....+..+.... . .....+++|+.|++++|.+ ..+..+
T Consensus 408 -~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l 486 (768)
T 3rgz_A 408 -GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL 486 (768)
T ss_dssp -EECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred -cccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHH
Confidence 00111233444455555555444432222111100 0 0012356677777777766 344456
Q ss_pred hhccCcceEEEeccchhhhcccccccccccccCCcCCCCCccceeecccCCcccccCCCCCCCCCcceEeeccCC
Q 037847 466 VFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLKSVYPNPQPFPKLKKIQAFHCR 540 (542)
Q Consensus 466 ~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~p~L~~L~i~~C~ 540 (542)
+.+++|++|+|++|.+.... +...+.+++|++|++.+|.-...+|.....+++|++|++++|+
T Consensus 487 ~~l~~L~~L~L~~N~l~~~~------------p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 487 SNCTNLNWISLSNNRLTGEI------------PKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549 (768)
T ss_dssp GGCTTCCEEECCSSCCCSCC------------CGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSE
T ss_pred hcCCCCCEEEccCCccCCcC------------ChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCc
Confidence 66777777777776665332 2356678888888888876555677777778888888888764
No 19
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.90 E-value=4.1e-23 Score=217.78 Aligned_cols=150 Identities=23% Similarity=0.261 Sum_probs=126.9
Q ss_pred cCcccccCCcccccccceEEEeecCCcCCCC--CCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCc
Q 037847 192 AGVKLTEAPKVEEWEGAKRISLTANGIGSLS--EIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLP 269 (542)
Q Consensus 192 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp 269 (542)
.+..+..+|... ...+++|++++|.+..++ .+.++++|++|++++|.+..+++..|..+++|++|++++| .+..+|
T Consensus 13 ~~~~l~~ip~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~ 90 (549)
T 2z81_A 13 RSRSFTSIPSGL-TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-HLSSLS 90 (549)
T ss_dssp TTSCCSSCCSCC-CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCSCC
T ss_pred CCCccccccccC-CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC-ccCccC
Confidence 445666677533 378999999999998763 5899999999999999999988878999999999999999 555555
Q ss_pred c-ccCCCCCCCEEeccCCCCCc--ccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCC
Q 037847 270 S-GISGLVSLHHLDLSSTDITG--LPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGK 343 (542)
Q Consensus 270 ~-~i~~l~~L~~L~l~~~~i~~--lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~ 343 (542)
. .++.+++|++|++++|.++. .|..++++++|++|++++|.....+|...++++++|++|++++|.+.+..|..
T Consensus 91 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 167 (549)
T 2z81_A 91 SSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS 167 (549)
T ss_dssp HHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT
T ss_pred HHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh
Confidence 4 49999999999999999985 46789999999999999996678887655899999999999999987765543
No 20
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=8.1e-23 Score=205.83 Aligned_cols=273 Identities=16% Similarity=0.145 Sum_probs=181.9
Q ss_pred CCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCc-cccCCCCCCCEEeccCCCCCccc-HHhhcCCCCC
Q 037847 225 PTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLP-SGISGLVSLHHLDLSSTDITGLP-QELKALEKLR 302 (542)
Q Consensus 225 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp-~~i~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~ 302 (542)
..+++++.|+++++.+..+++..+..+++|++|++++| .+..+| ..++.+.+|++|++++|.++.+| ..++++++|+
T Consensus 42 ~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 120 (390)
T ss_dssp GGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cccCCceEEEecCCchhhCChhHhcccccCcEEECCCC-cccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence 45689999999999999999988999999999999999 566555 58999999999999999999975 4589999999
Q ss_pred EEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCCceeeeEecchHHHHHhh
Q 037847 303 YLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFL 382 (542)
Q Consensus 303 ~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~ 382 (542)
+|++++| .+..+|...++++++|++|++++|.+.+..| ..+..+++|+.|+++.+.....
T Consensus 121 ~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~---------------~~~~~l~~L~~L~l~~n~l~~~---- 180 (390)
T 3o6n_A 121 VLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIED---------------DTFQATTSLQNLQLSSNRLTHV---- 180 (390)
T ss_dssp EEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCT---------------TTTSSCTTCCEEECCSSCCSBC----
T ss_pred EEECCCC-ccCcCCHHHhcCCCCCcEEECCCCccCccCh---------------hhccCCCCCCEEECCCCcCCcc----
Confidence 9999999 6778988767899999999999998764322 2355667777777776543211
Q ss_pred cCchhhccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccchhhc-----------ccccccccccCE
Q 037847 383 KYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVK-----------KLFRNGFRNLNT 451 (542)
Q Consensus 383 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~-----------~~~~~~l~~L~~ 451 (542)
.....+.++.+.+..... ..+...++|++|++++|.+..++........ ......+++|++
T Consensus 181 -~~~~l~~L~~L~l~~n~l-------~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~ 252 (390)
T 3o6n_A 181 -DLSLIPSLFHANVSYNLL-------STLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVE 252 (390)
T ss_dssp -CGGGCTTCSEEECCSSCC-------SEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSE
T ss_pred -ccccccccceeecccccc-------cccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccE
Confidence 011123344444433221 1122233444444444444332211000000 001133566777
Q ss_pred EEEccCCC--CCcchhhhccCcceEEEeccchhhhcccccccccccccCCcCCCCCccceeecccCCcccccCCCCCCCC
Q 037847 452 VVLRSCRG--KDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLKSVYPNPQPFP 529 (542)
Q Consensus 452 L~L~~c~~--~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~p 529 (542)
|++++|.+ ..+..+..+++|++|+|++|.++.++. ....+++|++|++.++ .+..++.....++
T Consensus 253 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-------------~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~ 318 (390)
T 3o6n_A 253 VDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNL-------------YGQPIPTLKVLDLSHN-HLLHVERNQPQFD 318 (390)
T ss_dssp EECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEEC-------------SSSCCTTCCEEECCSS-CCCCCGGGHHHHT
T ss_pred EECCCCcCCCcChhHccccccCCEEECCCCcCcccCc-------------ccCCCCCCCEEECCCC-cceecCccccccC
Confidence 77777666 223445666777777777766665532 3456777888888776 4666665555677
Q ss_pred CcceEeeccCC
Q 037847 530 KLKKIQAFHCR 540 (542)
Q Consensus 530 ~L~~L~i~~C~ 540 (542)
+|++|++++|+
T Consensus 319 ~L~~L~L~~N~ 329 (390)
T 3o6n_A 319 RLENLYLDHNS 329 (390)
T ss_dssp TCSEEECCSSC
T ss_pred cCCEEECCCCc
Confidence 88888877764
No 21
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.90 E-value=1.4e-22 Score=216.34 Aligned_cols=303 Identities=19% Similarity=0.150 Sum_probs=147.2
Q ss_pred ccccccceEEEeecCCcCCC--CCCCCCCCccEEEccCcccccccchhhccCCCcc--EEEecCCCCCCcCc--------
Q 037847 202 VEEWEGAKRISLTANGIGSL--SEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLR--VLSLRGNFPPSTLP-------- 269 (542)
Q Consensus 202 ~~~~~~l~~l~l~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~--~L~l~~~~~~~~lp-------- 269 (542)
+..+.+++.|++.+|.+..+ +.+..+++|++|++++|.+..+++..++.+++|+ .|++++|. +..++
T Consensus 125 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~-l~~~~~~~~~~~~ 203 (606)
T 3t6q_A 125 LHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGND-IAGIEPGAFDSAV 203 (606)
T ss_dssp CTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCC-CCEECTTTTTTCE
T ss_pred hccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCc-cCccChhHhhhcc
Confidence 44556677777777766654 4555577777777777766666555566666666 56666552 22211
Q ss_pred --------------------------------------------------------------------cccCCCCCCCEE
Q 037847 270 --------------------------------------------------------------------SGISGLVSLHHL 281 (542)
Q Consensus 270 --------------------------------------------------------------------~~i~~l~~L~~L 281 (542)
..++.+++|++|
T Consensus 204 L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 283 (606)
T 3t6q_A 204 FQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQEL 283 (606)
T ss_dssp EEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEE
T ss_pred ccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEE
Confidence 113344444444
Q ss_pred eccCCCCCcccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhcc
Q 037847 282 DLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLG 361 (542)
Q Consensus 282 ~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 361 (542)
++++|.++.+|..+..+++|++|++++| .+..++...+.++++|++|++++|.+.+.+|. ..+..
T Consensus 284 ~l~~n~l~~lp~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~--------------~~~~~ 348 (606)
T 3t6q_A 284 DLTATHLSELPSGLVGLSTLKKLVLSAN-KFENLCQISASNFPSLTHLSIKGNTKRLELGT--------------GCLEN 348 (606)
T ss_dssp ECTTSCCSCCCSSCCSCTTCCEEECTTC-CCSBGGGGCGGGCTTCSEEECCSCSSCCBCCS--------------STTTT
T ss_pred eccCCccCCCChhhcccccCCEEECccC-CcCcCchhhhhccCcCCEEECCCCCcccccch--------------hhhhc
Confidence 4444444444444444444444444444 22222222244444444444444443322211 12445
Q ss_pred ccCCceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccchhhccc
Q 037847 362 LKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKL 441 (542)
Q Consensus 362 L~~L~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 441 (542)
+++|+.|+++.+.................++.+++.++.. .......+..+++|++|++++|.+....+..
T Consensus 349 l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~------- 419 (606)
T 3t6q_A 349 LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEP--LSLKTEAFKECPQLELLDLAFTRLKVKDAQS------- 419 (606)
T ss_dssp CTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSC--EEECTTTTTTCTTCSEEECTTCCEECCTTCC-------
T ss_pred cCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcC--CcCCHHHhcCCccCCeEECCCCcCCCcccch-------
Confidence 5556666555443221110011112223445555544331 0111123445566666666666554421111
Q ss_pred ccccccccCEEEEccCCC--CCcchhhhccCcceEEEeccchhhhcccccccccccccCCcCCCCCccceeecccCCccc
Q 037847 442 FRNGFRNLNTVVLRSCRG--KDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLK 519 (542)
Q Consensus 442 ~~~~l~~L~~L~L~~c~~--~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 519 (542)
....+++|+.|++++|.+ ..+..++.+++|++|+|++|.+.+..... +.....+++|+.|++.+|. +.
T Consensus 420 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---------~~~~~~l~~L~~L~Ls~n~-l~ 489 (606)
T 3t6q_A 420 PFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQK---------TNSLQTLGRLEILVLSFCD-LS 489 (606)
T ss_dssp TTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECS---------SCGGGGCTTCCEEECTTSC-CC
T ss_pred hhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCcccccc---------chhhccCCCccEEECCCCc-cC
Confidence 012356677777776666 23334566667777777666665421100 1134445666666666653 33
Q ss_pred cc-CCCCCCCCCcceEeeccC
Q 037847 520 SV-YPNPQPFPKLKKIQAFHC 539 (542)
Q Consensus 520 ~~-~~~~~~~p~L~~L~i~~C 539 (542)
.+ +.....+++|++|+++++
T Consensus 490 ~~~~~~~~~l~~L~~L~Ls~N 510 (606)
T 3t6q_A 490 SIDQHAFTSLKMMNHVDLSHN 510 (606)
T ss_dssp EECTTTTTTCTTCCEEECCSS
T ss_pred ccChhhhccccCCCEEECCCC
Confidence 33 233445566666666554
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.90 E-value=1.3e-22 Score=214.33 Aligned_cols=142 Identities=28% Similarity=0.313 Sum_probs=118.3
Q ss_pred eEEEecCcccccCCcccccccceEEEeecCCcCCCC--CCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCC
Q 037847 187 NFLVRAGVKLTEAPKVEEWEGAKRISLTANGIGSLS--EIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFP 264 (542)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 264 (542)
..+...+..+..+|... ..+++.|++++|.+..++ .+.++++|++|++++|.++.+++..|..+++|++|++++| .
T Consensus 34 ~~l~ls~~~L~~ip~~~-~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~ 111 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKDL-PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN-R 111 (562)
T ss_dssp CEEECTTSCCCSCCTTS-CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS-C
T ss_pred cEEEcCCCCCccCCCCC-CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC-c
Confidence 45555666777777533 278999999999999886 5899999999999999999988888999999999999999 6
Q ss_pred CCcCccccCCCCCCCEEeccCCCCCccc--HHhhcCCCCCEEeccCCcccCccchhhcCCCCCC--cEEeccCccc
Q 037847 265 PSTLPSGISGLVSLHHLDLSSTDITGLP--QELKALEKLRYLNLDYAFHLSIIPHQLISCFSKL--EVLRLCGCGR 336 (542)
Q Consensus 265 ~~~lp~~i~~l~~L~~L~l~~~~i~~lp--~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L--~~L~l~~~~~ 336 (542)
+..+|.. .+.+|++|++++|.++.+| ..++++++|++|++++|. +...+ +..+++| ++|++++|.+
T Consensus 112 l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~-l~~~~---~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 112 LQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK-FRQLD---LLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp CCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB-CCTTT---TGGGTTSCEEEEEEEESSC
T ss_pred CCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCc-cccCc---hhhhhhceeeEEEeecccc
Confidence 7889876 8999999999999999864 789999999999999984 44322 4445555 9999988877
No 23
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.90 E-value=1.2e-22 Score=207.98 Aligned_cols=232 Identities=18% Similarity=0.192 Sum_probs=125.7
Q ss_pred ccccccceEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEE
Q 037847 202 VEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHL 281 (542)
Q Consensus 202 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L 281 (542)
+..+.+++.+++.++.+..+|.+..+++|++|++++|.++.++ ++.+++|++|++++| .+..+| ++.+++|++|
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N-~l~~~~--~~~l~~L~~L 111 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSN-KLTNLD--VTPLTKLTYL 111 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSS-CCSCCC--CTTCTTCCEE
T ss_pred hhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCC-CCceee--cCCCCcCCEE
Confidence 3445566666666666666666666666666666666665542 556666666666666 444443 6666666666
Q ss_pred eccCCCCCcccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhcc
Q 037847 282 DLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLG 361 (542)
Q Consensus 282 ~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 361 (542)
++++|.++.+| ++.+++|++|++++| .+..++ ++.+++|++|++++|...+.+ .+..
T Consensus 112 ~L~~N~l~~l~--~~~l~~L~~L~l~~N-~l~~l~---l~~l~~L~~L~l~~n~~~~~~-----------------~~~~ 168 (457)
T 3bz5_A 112 NCDTNKLTKLD--VSQNPLLTYLNCARN-TLTEID---VSHNTQLTELDCHLNKKITKL-----------------DVTP 168 (457)
T ss_dssp ECCSSCCSCCC--CTTCTTCCEEECTTS-CCSCCC---CTTCTTCCEEECTTCSCCCCC-----------------CCTT
T ss_pred ECCCCcCCeec--CCCCCcCCEEECCCC-ccceec---cccCCcCCEEECCCCCccccc-----------------cccc
Confidence 66666666664 566666666666666 344443 456666666666666433211 1344
Q ss_pred ccCCceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccchhhccc
Q 037847 362 LKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKL 441 (542)
Q Consensus 362 L~~L~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 441 (542)
+++|+.|+++.+...... ......++.+.+.++..... .+..+++|++|++++|.+..++
T Consensus 169 l~~L~~L~ls~n~l~~l~-----l~~l~~L~~L~l~~N~l~~~-----~l~~l~~L~~L~Ls~N~l~~ip---------- 228 (457)
T 3bz5_A 169 QTQLTTLDCSFNKITELD-----VSQNKLLNRLNCDTNNITKL-----DLNQNIQLTFLDCSSNKLTEID---------- 228 (457)
T ss_dssp CTTCCEEECCSSCCCCCC-----CTTCTTCCEEECCSSCCSCC-----CCTTCTTCSEEECCSSCCSCCC----------
T ss_pred CCcCCEEECCCCccceec-----cccCCCCCEEECcCCcCCee-----ccccCCCCCEEECcCCcccccC----------
Confidence 555555555544322210 11123345555544432111 2445566666666666655532
Q ss_pred ccccccccCEEEEccCCCCCcchhhhccCcceEEEeccchhhh
Q 037847 442 FRNGFRNLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEI 484 (542)
Q Consensus 442 ~~~~l~~L~~L~L~~c~~~~~~~l~~l~~L~~L~L~~~~l~~~ 484 (542)
...+++|+.|++++|.+..++ ++.+++|+.|+++++.++.+
T Consensus 229 -~~~l~~L~~L~l~~N~l~~~~-~~~l~~L~~L~l~~n~L~~L 269 (457)
T 3bz5_A 229 -VTPLTQLTYFDCSVNPLTELD-VSTLSKLTTLHCIQTDLLEI 269 (457)
T ss_dssp -CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECTTCCCSCC
T ss_pred -ccccCCCCEEEeeCCcCCCcC-HHHCCCCCEEeccCCCCCEE
Confidence 122556666666666552222 34455555555555444443
No 24
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.90 E-value=1e-22 Score=215.81 Aligned_cols=152 Identities=21% Similarity=0.219 Sum_probs=121.4
Q ss_pred EEEecCcccccCC--cccccccceEEEeecCCcCCCC--CCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCC
Q 037847 188 FLVRAGVKLTEAP--KVEEWEGAKRISLTANGIGSLS--EIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNF 263 (542)
Q Consensus 188 ~~~~~~~~~~~~~--~~~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 263 (542)
.+...+..+..++ .+..+.++++|++.+|.+..++ .+.++++|++|++++|.+..+++..|.++++|++|++++|
T Consensus 32 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n- 110 (570)
T 2z63_A 32 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET- 110 (570)
T ss_dssp EEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTS-
T ss_pred EEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccccc-
Confidence 3344444444443 4677889999999999998875 4889999999999999998888877999999999999999
Q ss_pred CCCcCcc-ccCCCCCCCEEeccCCCCCc--ccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCC----cEEeccCccc
Q 037847 264 PPSTLPS-GISGLVSLHHLDLSSTDITG--LPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKL----EVLRLCGCGR 336 (542)
Q Consensus 264 ~~~~lp~-~i~~l~~L~~L~l~~~~i~~--lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L----~~L~l~~~~~ 336 (542)
.+..+|. .++.+.+|++|++++|.++. +|..++++++|++|++++| .+..++...++.+++| ++|++++|.+
T Consensus 111 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l 189 (570)
T 2z63_A 111 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 189 (570)
T ss_dssp CCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTS-CCCEECGGGGHHHHTCTTCCCEEECTTCCC
T ss_pred ccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCC-ccceecHHHccchhccchhhhhcccCCCCc
Confidence 6776664 68999999999999998886 7999999999999999999 4555544336666666 7788887776
Q ss_pred ccccc
Q 037847 337 FGVIK 341 (542)
Q Consensus 337 ~~~~~ 341 (542)
.+..|
T Consensus 190 ~~~~~ 194 (570)
T 2z63_A 190 NFIQP 194 (570)
T ss_dssp CEECT
T ss_pred eecCH
Confidence 55443
No 25
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.89 E-value=2.7e-22 Score=214.09 Aligned_cols=146 Identities=24% Similarity=0.189 Sum_probs=116.8
Q ss_pred EEecCcccccCCcccccccceEEEeecCCcCCCC--CCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCC
Q 037847 189 LVRAGVKLTEAPKVEEWEGAKRISLTANGIGSLS--EIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPS 266 (542)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 266 (542)
+...+..+..+|... ...+++|++++|.+..++ .+.++++|++|++++|.+..+.+..|.++++|++|++++|....
T Consensus 17 ~~c~~~~l~~iP~~l-~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~ 95 (606)
T 3t6q_A 17 YNCENLGLNEIPGTL-PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIF 95 (606)
T ss_dssp EECTTSCCSSCCTTS-CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSE
T ss_pred EECCCCCcccCcCCC-CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccc
Confidence 333445566666422 257899999999998874 58899999999999999888877778999999999999995444
Q ss_pred cCccccCCCCCCCEEeccCCCCCcc-cHHhhcCCCCCEEeccCCcccCcc--chhhcCCCCCCcEEeccCccccc
Q 037847 267 TLPSGISGLVSLHHLDLSSTDITGL-PQELKALEKLRYLNLDYAFHLSII--PHQLISCFSKLEVLRLCGCGRFG 338 (542)
Q Consensus 267 ~lp~~i~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~~~~~l--p~~~~~~l~~L~~L~l~~~~~~~ 338 (542)
..|..++.+.+|++|++++|.++.+ |..++++++|++|++++| .+..+ |. +..+++|++|++++|.+.+
T Consensus 96 ~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~--~~~l~~L~~L~L~~n~l~~ 167 (606)
T 3t6q_A 96 MAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSN-HISSIKLPK--GFPTEKLKVLDFQNNAIHY 167 (606)
T ss_dssp ECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSS-CCCCCCCCT--TCCCTTCCEEECCSSCCCE
T ss_pred cChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCC-cccccCccc--ccCCcccCEEEcccCcccc
Confidence 5577899999999999999999886 567889999999999998 45554 44 4558999999999988764
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.89 E-value=3e-22 Score=206.00 Aligned_cols=295 Identities=16% Similarity=0.201 Sum_probs=200.3
Q ss_pred eEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcC-ccccCCCCCCCEEeccCCC
Q 037847 209 KRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTL-PSGISGLVSLHHLDLSSTD 287 (542)
Q Consensus 209 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l-p~~i~~l~~L~~L~l~~~~ 287 (542)
+.++..+..+..+|.+ .++|++|++++|.++.+++..++.+++|++|++++|.....+ |..|+.+++|++|++++|.
T Consensus 13 ~~~~c~~~~l~~lp~l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~ 90 (455)
T 3v47_A 13 YNAICINRGLHQVPEL--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90 (455)
T ss_dssp TEEECCSSCCSSCCCC--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT
T ss_pred cccCcCCCCcccCCCC--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCc
Confidence 3567777788888873 389999999999999887777999999999999999544455 5678999999999999999
Q ss_pred CCcc-cHHhhcCCCCCEEeccCCcccCccch-hhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCC
Q 037847 288 ITGL-PQELKALEKLRYLNLDYAFHLSIIPH-QLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHL 365 (542)
Q Consensus 288 i~~l-p~~i~~l~~L~~L~l~~~~~~~~lp~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 365 (542)
++.+ |..++++++|++|++++|.....+|. ..++++++|++|++++|.+.+..|.. .+.++++|
T Consensus 91 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--------------~~~~l~~L 156 (455)
T 3v47_A 91 FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS--------------FFLNMRRF 156 (455)
T ss_dssp TCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCG--------------GGGGCTTC
T ss_pred cCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCccc--------------ccCCCCcc
Confidence 9885 78899999999999999954333333 34788999999999999886543321 15566777
Q ss_pred ceeeeEecchHHH--HHhhcC------------------------------chhhccceeEEeccccCCC----------
Q 037847 366 NVLSWSFGSSLAV--QKFLKY------------------------------PKLVSITQSVWVECGTYTR---------- 403 (542)
Q Consensus 366 ~~l~~~~~~~~~~--~~l~~~------------------------------~~~~~~l~~l~l~~~~~~~---------- 403 (542)
+.|+++.+..... ..+... ......++.|++.++....
T Consensus 157 ~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~ 236 (455)
T 3v47_A 157 HVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAI 236 (455)
T ss_dssp CEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHT
T ss_pred cEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccc
Confidence 7777765542211 000000 0001234444444432100
Q ss_pred --CCcee-----------------------cccc--cccccceeeecccCccceeeccchhhcccccccccccCEEEEcc
Q 037847 404 --PPFNV-----------------------LHLA--YMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRS 456 (542)
Q Consensus 404 --~~~~~-----------------------~~l~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~ 456 (542)
..... ..+. ..++|++|++++|.+....+..+ ..+++|+.|++++
T Consensus 237 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~--------~~l~~L~~L~Ls~ 308 (455)
T 3v47_A 237 AGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVF--------SHFTDLEQLTLAQ 308 (455)
T ss_dssp TTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTT--------TTCTTCCEEECTT
T ss_pred cccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhc--------ccCCCCCEEECCC
Confidence 00000 0000 11355555555555554433322 3377888888888
Q ss_pred CCC--CCcchhhhccCcceEEEeccchhhhcccccccccccccCCcCCCCCccceeecccCCccccc-CCCCCCCCCcce
Q 037847 457 CRG--KDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLKSV-YPNPQPFPKLKK 533 (542)
Q Consensus 457 c~~--~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~-~~~~~~~p~L~~ 533 (542)
|.+ ..+..++.+++|++|+|++|.+++++. .....+++|++|++.++. +..+ +.....+++|++
T Consensus 309 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~------------~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~ 375 (455)
T 3v47_A 309 NEINKIDDNAFWGLTHLLKLNLSQNFLGSIDS------------RMFENLDKLEVLDLSYNH-IRALGDQSFLGLPNLKE 375 (455)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECG------------GGGTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCE
T ss_pred CcccccChhHhcCcccCCEEECCCCccCCcCh------------hHhcCcccCCEEECCCCc-ccccChhhccccccccE
Confidence 888 333457788888888888888766642 256678999999999974 5555 455677999999
Q ss_pred EeeccCC
Q 037847 534 IQAFHCR 540 (542)
Q Consensus 534 L~i~~C~ 540 (542)
|+++++.
T Consensus 376 L~L~~N~ 382 (455)
T 3v47_A 376 LALDTNQ 382 (455)
T ss_dssp EECCSSC
T ss_pred EECCCCc
Confidence 9998863
No 27
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.89 E-value=4.1e-22 Score=215.61 Aligned_cols=149 Identities=23% Similarity=0.210 Sum_probs=124.0
Q ss_pred EEEecCcccccCCcccccccceEEEeecCCcCCCCC--CCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCC
Q 037847 188 FLVRAGVKLTEAPKVEEWEGAKRISLTANGIGSLSE--IPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPP 265 (542)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 265 (542)
.+...+..+..+|.... .++++|+++++.+..++. +.++++|++|++++|.+..+++..++.+++|++|++++| .+
T Consensus 8 ~~~cs~~~L~~ip~~~~-~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l 85 (680)
T 1ziw_A 8 VADCSHLKLTQVPDDLP-TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-EL 85 (680)
T ss_dssp EEECCSSCCSSCCSCSC-TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CC
T ss_pred eeECCCCCccccccccC-CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-cc
Confidence 34445556677775332 789999999999998863 889999999999999999888888999999999999999 67
Q ss_pred CcCcc-ccCCCCCCCEEeccCCCCCccc-HHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCcccccc
Q 037847 266 STLPS-GISGLVSLHHLDLSSTDITGLP-QELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGV 339 (542)
Q Consensus 266 ~~lp~-~i~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~ 339 (542)
..+|. .|+.+.+|++|++++|.++.+| ..++++++|++|++++|. +...+...++++++|++|++++|.+.+.
T Consensus 86 ~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 160 (680)
T 1ziw_A 86 SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNG-LSSTKLGTQVQLENLQELLLSNNKIQAL 160 (680)
T ss_dssp CCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSC-CSCCCCCSSSCCTTCCEEECCSSCCCCB
T ss_pred CccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCc-ccccCchhhcccccCCEEEccCCccccc
Confidence 77776 5999999999999999999876 578999999999999994 4444444488999999999999987654
No 28
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.89 E-value=2.1e-22 Score=214.96 Aligned_cols=121 Identities=21% Similarity=0.314 Sum_probs=89.6
Q ss_pred EEecCcccccCC--cccccccceEEEeecCCcCCCC--CCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCC
Q 037847 189 LVRAGVKLTEAP--KVEEWEGAKRISLTANGIGSLS--EIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFP 264 (542)
Q Consensus 189 ~~~~~~~~~~~~--~~~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 264 (542)
+...+..+..++ .+..+.++++|++++|.+..++ .+.++++|++|++++|.+..+++..|+++++|++|++++| .
T Consensus 37 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n-~ 115 (606)
T 3vq2_A 37 IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVET-K 115 (606)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTS-C
T ss_pred EECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCC-c
Confidence 333444444443 3566778888888888887763 3678888888888888887776666888888888888888 4
Q ss_pred CCcCc-cccCCCCCCCEEeccCCCCCc--ccHHhhcCCCCCEEeccCCc
Q 037847 265 PSTLP-SGISGLVSLHHLDLSSTDITG--LPQELKALEKLRYLNLDYAF 310 (542)
Q Consensus 265 ~~~lp-~~i~~l~~L~~L~l~~~~i~~--lp~~i~~l~~L~~L~l~~~~ 310 (542)
+..+| ..++.+.+|++|++++|.++. +|..++++++|++|++++|.
T Consensus 116 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~ 164 (606)
T 3vq2_A 116 LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY 164 (606)
T ss_dssp CCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC
T ss_pred cccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc
Confidence 54444 668888888888888887774 68888888888888888873
No 29
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.89 E-value=1.1e-21 Score=216.84 Aligned_cols=151 Identities=22% Similarity=0.264 Sum_probs=124.0
Q ss_pred eEEEecCcccccCCcccccccceEEEeecCCcCCCC--CCCCCCCccEEEccCcc-cccccchhhccCCCccEEEecCCC
Q 037847 187 NFLVRAGVKLTEAPKVEEWEGAKRISLTANGIGSLS--EIPTCPRLVTLLLDGNR-IEEITDGFFQSLSTLRVLSLRGNF 263 (542)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~~ 263 (542)
..+......+..+|. ...+++.|++++|.+..++ .+.++++|++|++++|. ...+++..|.++++|++|++++|.
T Consensus 7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~ 84 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK 84 (844)
T ss_dssp EEEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC
T ss_pred eEEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc
Confidence 344556667888887 5589999999999998763 68999999999999994 456667779999999999999995
Q ss_pred CCCcCccccCCCCCCCEEeccCCCCCc-ccHH--hhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCcccccc
Q 037847 264 PPSTLPSGISGLVSLHHLDLSSTDITG-LPQE--LKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGV 339 (542)
Q Consensus 264 ~~~~lp~~i~~l~~L~~L~l~~~~i~~-lp~~--i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~ 339 (542)
.....|..|+.+.+|++|++++|.++. +|.. ++++++|++|++++|......|...++++++|++|++++|.+.+.
T Consensus 85 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~ 163 (844)
T 3j0a_A 85 IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV 163 (844)
T ss_dssp CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC
T ss_pred CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee
Confidence 444558899999999999999999987 5665 899999999999999544433433489999999999999987654
No 30
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.89 E-value=5e-22 Score=205.64 Aligned_cols=287 Identities=16% Similarity=0.160 Sum_probs=219.8
Q ss_pred eEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcC-ccccCCCCCCCEEeccCCC
Q 037847 209 KRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTL-PSGISGLVSLHHLDLSSTD 287 (542)
Q Consensus 209 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l-p~~i~~l~~L~~L~l~~~~ 287 (542)
+.++..+..+..+|.. -.++++.|++++|.++.+++..|..+++|++|++++| .+..+ |..|+.+.+|++|++++|.
T Consensus 14 ~~v~c~~~~l~~ip~~-~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEG-IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp TEEECCSCCCSSCCSC-CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCcCCCC-CCCCCcEEECCCCccceECHhHccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCCc
Confidence 4567777788888752 2468999999999999988877999999999999999 55544 7889999999999999999
Q ss_pred CCcccHH-hhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCCc
Q 037847 288 ITGLPQE-LKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLN 366 (542)
Q Consensus 288 i~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 366 (542)
++.+|.. +.++++|++|++++| .+..++...+.++++|++|++++|.+.+.. ...+.++++|+
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~---------------~~~~~~l~~L~ 155 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISEN-KIVILLDYMFQDLYNLKSLEVGDNDLVYIS---------------HRAFSGLNSLE 155 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEEECCTTCCEEC---------------TTSSTTCTTCC
T ss_pred CCccCcccccCCCCCCEEECCCC-ccccCChhHccccccCCEEECCCCccceeC---------------hhhccCCCCCC
Confidence 9998875 689999999999999 455554445899999999999999875432 23466788999
Q ss_pred eeeeEecchHHH--HHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccchhhcccccc
Q 037847 367 VLSWSFGSSLAV--QKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRN 444 (542)
Q Consensus 367 ~l~~~~~~~~~~--~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 444 (542)
.|+++.+..... ..+. ....++.|++.+... .......+..+++|++|++++|......+... .
T Consensus 156 ~L~l~~n~l~~~~~~~l~----~l~~L~~L~l~~n~i--~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--------~ 221 (477)
T 2id5_A 156 QLTLEKCNLTSIPTEALS----HLHGLIVLRLRHLNI--NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNC--------L 221 (477)
T ss_dssp EEEEESCCCSSCCHHHHT----TCTTCCEEEEESCCC--CEECTTCSCSCTTCCEEEEECCTTCCEECTTT--------T
T ss_pred EEECCCCcCcccChhHhc----ccCCCcEEeCCCCcC--cEeChhhcccCcccceeeCCCCccccccCccc--------c
Confidence 999987753221 1121 235677888876543 12222356778999999999988765322221 1
Q ss_pred cccccCEEEEccCCCCCcc--hhhhccCcceEEEeccchhhhcccccccccccccCCcCCCCCccceeecccCCccccc-
Q 037847 445 GFRNLNTVVLRSCRGKDLT--WLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLKSV- 521 (542)
Q Consensus 445 ~l~~L~~L~L~~c~~~~~~--~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~- 521 (542)
...+|++|++++|.+..++ .+..+++|++|+|++|.++.++. .....+++|+.|.+.++ .+..+
T Consensus 222 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~------------~~~~~l~~L~~L~L~~n-~l~~~~ 288 (477)
T 2id5_A 222 YGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEG------------SMLHELLRLQEIQLVGG-QLAVVE 288 (477)
T ss_dssp TTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECT------------TSCTTCTTCCEEECCSS-CCSEEC
T ss_pred cCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccCh------------hhccccccCCEEECCCC-ccceEC
Confidence 1459999999999993333 57899999999999999887753 35677999999999997 45555
Q ss_pred CCCCCCCCCcceEeeccCC
Q 037847 522 YPNPQPFPKLKKIQAFHCR 540 (542)
Q Consensus 522 ~~~~~~~p~L~~L~i~~C~ 540 (542)
+.....+++|++|+++++.
T Consensus 289 ~~~~~~l~~L~~L~L~~N~ 307 (477)
T 2id5_A 289 PYAFRGLNYLRVLNVSGNQ 307 (477)
T ss_dssp TTTBTTCTTCCEEECCSSC
T ss_pred HHHhcCcccCCEEECCCCc
Confidence 4456679999999999873
No 31
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.89 E-value=2.1e-22 Score=219.43 Aligned_cols=305 Identities=15% Similarity=0.142 Sum_probs=178.9
Q ss_pred ccccceEEEeecCCcC-CCC-CCCCCCCccEEEccCcc-ccc--ccchhhccC-------CCccEEEecCCCCCCcCcc-
Q 037847 204 EWEGAKRISLTANGIG-SLS-EIPTCPRLVTLLLDGNR-IEE--ITDGFFQSL-------STLRVLSLRGNFPPSTLPS- 270 (542)
Q Consensus 204 ~~~~l~~l~l~~~~~~-~~~-~~~~~~~L~~L~l~~~~-~~~--~~~~~~~~l-------~~L~~L~l~~~~~~~~lp~- 270 (542)
.+.+++.|++.+|.+. .+| .+.++++|+.|++++|. ++. +|.. ++.+ ++|++|++++| .+..+|.
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~-i~~L~~~~~~l~~L~~L~Ls~N-~L~~ip~~ 566 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKAD-WTRLADDEDTGPKIQIFYMGYN-NLEEFPAS 566 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHH-HHHHHHCTTTTTTCCEEECCSS-CCCBCCCH
T ss_pred cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHH-HHhhhhcccccCCccEEEeeCC-cCCccCCh
Confidence 6788899999888754 345 47788888888888886 654 3332 3433 47888888888 4557777
Q ss_pred -ccCCCCCCCEEeccCCCCCcccHHhhcCCCCCEEeccCCcccCccchhhcCCCCC-CcEEeccCccccccccCCCCccc
Q 037847 271 -GISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSK-LEVLRLCGCGRFGVIKGKEGNVL 348 (542)
Q Consensus 271 -~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~-L~~L~l~~~~~~~~~~~~~~~~~ 348 (542)
.++.+++|++|++++|.++.+| .++++++|++|++++| .+..+|.. +.++++ |++|++++|.+. .+|.......
T Consensus 567 ~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N-~l~~lp~~-l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~ 642 (876)
T 4ecn_A 567 ASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYN-QIEEIPED-FCAFTDQVEGLGFSHNKLK-YIPNIFNAKS 642 (876)
T ss_dssp HHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSS-CCSCCCTT-SCEECTTCCEEECCSSCCC-SCCSCCCTTC
T ss_pred hhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCC-ccccchHH-HhhccccCCEEECcCCCCC-cCchhhhccc
Confidence 7788888888888888777777 7777788888888777 44577765 677777 777777777765 4443322110
Q ss_pred --------------cCCCcchhHhhc--cccCCceeeeEecchHHHH---------------------HhhcC-chh---
Q 037847 349 --------------CDGAEPLMKELL--GLKHLNVLSWSFGSSLAVQ---------------------KFLKY-PKL--- 387 (542)
Q Consensus 349 --------------~~~~~~~~~~l~--~L~~L~~l~~~~~~~~~~~---------------------~l~~~-~~~--- 387 (542)
....+.....+. .+.+|+.|+++.+...... .+... ...
T Consensus 643 ~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~ 722 (876)
T 4ecn_A 643 VYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDG 722 (876)
T ss_dssp SSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTS
T ss_pred cCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccc
Confidence 000011111111 1224444444433321000 00000 000
Q ss_pred ----hccceeEEeccccCCCCCceecccc--cccccceeeecccCccceeeccchhhcccccccccccCEEEEcc-----
Q 037847 388 ----VSITQSVWVECGTYTRPPFNVLHLA--YMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRS----- 456 (542)
Q Consensus 388 ----~~~l~~l~l~~~~~~~~~~~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~----- 456 (542)
.+.++.|++.++... .. ...+. .+++|+.|++++|.+..++.. ...+++|+.|+|++
T Consensus 723 ~l~nl~~L~~L~Ls~N~L~--~l-p~~l~~~~l~~L~~L~Ls~N~L~~lp~~---------l~~L~~L~~L~Ls~N~~ls 790 (876)
T 4ecn_A 723 NYKNTYLLTTIDLRFNKLT--SL-SDDFRATTLPYLSNMDVSYNCFSSFPTQ---------PLNSSQLKAFGIRHQRDAE 790 (876)
T ss_dssp CCTTGGGCCEEECCSSCCC--CC-CGGGSTTTCTTCCEEECCSSCCSSCCCG---------GGGCTTCCEEECCCCBCTT
T ss_pred cccccCCccEEECCCCCCc--cc-hHHhhhccCCCcCEEEeCCCCCCccchh---------hhcCCCCCEEECCCCCCcc
Confidence 014555555554332 11 12222 556666666666666553211 13477888888866
Q ss_pred -CCC--CCcchhhhccCcceEEEeccchhhhcccccccccccccCCcCCCCCccceeecccCCcccccCCC---------
Q 037847 457 -CRG--KDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLKSVYPN--------- 524 (542)
Q Consensus 457 -c~~--~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~--------- 524 (542)
|.+ ..+..+..+++|++|+|++|.+..++. . .+++|+.|+|++|+ +.++...
T Consensus 791 ~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~-------------~--l~~~L~~LdLs~N~-l~~i~~~~~~~~~~~~ 854 (876)
T 4ecn_A 791 GNRILRQWPTGITTCPSLIQLQIGSNDIRKVDE-------------K--LTPQLYILDIADNP-NISIDVTSVCPYIEAG 854 (876)
T ss_dssp CCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCS-------------C--CCSSSCEEECCSCT-TCEEECGGGHHHHHTT
T ss_pred cccccccChHHHhcCCCCCEEECCCCCCCccCH-------------h--hcCCCCEEECCCCC-CCccChHHccccccch
Confidence 444 444567788888888888888766543 2 35799999999986 3333211
Q ss_pred CCCCCCcceEeeccCCCC
Q 037847 525 PQPFPKLKKIQAFHCRQL 542 (542)
Q Consensus 525 ~~~~p~L~~L~i~~C~~L 542 (542)
...+..-+..+|.+|++|
T Consensus 855 ~~~L~~n~~~~I~gC~~L 872 (876)
T 4ecn_A 855 MYVLLYDKTQDIRGCDAL 872 (876)
T ss_dssp CCEEECCTTSEEESCGGG
T ss_pred heeecCCCccccCCCCCc
Confidence 111222234578899875
No 32
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=3.3e-22 Score=212.51 Aligned_cols=273 Identities=16% Similarity=0.146 Sum_probs=183.9
Q ss_pred CCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCc-cccCCCCCCCEEeccCCCCCcccHH-hhcCCCCC
Q 037847 225 PTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLP-SGISGLVSLHHLDLSSTDITGLPQE-LKALEKLR 302 (542)
Q Consensus 225 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp-~~i~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~ 302 (542)
..+.+++.++++++.+..+|+..+..+++|++|++++| .+..+| ..|+.+.+|++|++++|.++.+|.. ++++++|+
T Consensus 48 l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 48 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 126 (597)
T ss_dssp GGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred ccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCC-CCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence 35688999999999999999998999999999999999 555554 5899999999999999999997654 69999999
Q ss_pred EEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCCceeeeEecchHHHHHhh
Q 037847 303 YLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFL 382 (542)
Q Consensus 303 ~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~ 382 (542)
+|++++| .+..+|...++++++|++|++++|.+.+..|. .+.++++|+.|+++.+.....
T Consensus 127 ~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~---------------~~~~l~~L~~L~L~~N~l~~~---- 186 (597)
T 3oja_B 127 VLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD---------------TFQATTSLQNLQLSSNRLTHV---- 186 (597)
T ss_dssp EEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTT---------------TTTTCTTCCEEECTTSCCSBC----
T ss_pred EEEeeCC-CCCCCCHHHhccCCCCCEEEeeCCcCCCCChh---------------hhhcCCcCcEEECcCCCCCCc----
Confidence 9999999 67788887679999999999999988654332 345666777777765542211
Q ss_pred cCchhhccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccchhh-----------cccccccccccCE
Q 037847 383 KYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEV-----------KKLFRNGFRNLNT 451 (542)
Q Consensus 383 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~-----------~~~~~~~l~~L~~ 451 (542)
.....+.++.+.+..... ..+...++|+.|++++|.+..++....... .......+++|+.
T Consensus 187 -~~~~l~~L~~L~l~~n~l-------~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~ 258 (597)
T 3oja_B 187 -DLSLIPSLFHANVSYNLL-------STLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVE 258 (597)
T ss_dssp -CGGGCTTCSEEECCSSCC-------SEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSE
T ss_pred -ChhhhhhhhhhhcccCcc-------ccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCE
Confidence 011123344444433221 112223344444444444433221100000 0011234667777
Q ss_pred EEEccCCC--CCcchhhhccCcceEEEeccchhhhcccccccccccccCCcCCCCCccceeecccCCcccccCCCCCCCC
Q 037847 452 VVLRSCRG--KDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLKSVYPNPQPFP 529 (542)
Q Consensus 452 L~L~~c~~--~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~p 529 (542)
|+|++|.+ ..+..++.+++|++|+|++|.+..++. ....+++|+.|++.+| .+..++.....++
T Consensus 259 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~-------------~~~~l~~L~~L~Ls~N-~l~~i~~~~~~l~ 324 (597)
T 3oja_B 259 VDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNL-------------YGQPIPTLKVLDLSHN-HLLHVERNQPQFD 324 (597)
T ss_dssp EECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEEC-------------SSSCCTTCCEEECCSS-CCCCCGGGHHHHT
T ss_pred EECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCc-------------ccccCCCCcEEECCCC-CCCccCcccccCC
Confidence 77777776 233456677777777777777666532 4456788888888876 4556666566678
Q ss_pred CcceEeeccCC
Q 037847 530 KLKKIQAFHCR 540 (542)
Q Consensus 530 ~L~~L~i~~C~ 540 (542)
+|++|++++|+
T Consensus 325 ~L~~L~L~~N~ 335 (597)
T 3oja_B 325 RLENLYLDHNS 335 (597)
T ss_dssp TCSEEECCSSC
T ss_pred CCCEEECCCCC
Confidence 88888887764
No 33
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.88 E-value=2.2e-22 Score=197.23 Aligned_cols=218 Identities=20% Similarity=0.252 Sum_probs=122.8
Q ss_pred CCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccCCCCCcccHHhhcCCCCCEEecc
Q 037847 228 PRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLD 307 (542)
Q Consensus 228 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~ 307 (542)
.+++.|++++|.+..+++. +..+++|++|++++| .+..+|..++.+.+|++|++++|.++.+|..++++++|++|+++
T Consensus 81 ~~l~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~n-~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQ-AFRLSHLQHMTIDAA-GLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp TTCCEEEEESSCCSSCCSC-GGGGTTCSEEEEESS-CCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred cceeEEEccCCCchhcChh-hhhCCCCCEEECCCC-CccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence 4556666666666655554 555777777777777 45567766777777777777777777777777777777777777
Q ss_pred CCcccCccchhhcC---------CCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCCceeeeEecchHHH
Q 037847 308 YAFHLSIIPHQLIS---------CFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAV 378 (542)
Q Consensus 308 ~~~~~~~lp~~~~~---------~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~ 378 (542)
+|.....+|.. +. ++++|++|++++|.+. .+ +..+.++++|+.|+++.+...
T Consensus 159 ~n~~~~~~p~~-~~~~~~~~~~~~l~~L~~L~L~~n~l~-~l---------------p~~l~~l~~L~~L~L~~N~l~-- 219 (328)
T 4fcg_A 159 ACPELTELPEP-LASTDASGEHQGLVNLQSLRLEWTGIR-SL---------------PASIANLQNLKSLKIRNSPLS-- 219 (328)
T ss_dssp EETTCCCCCSC-SEEEC-CCCEEESTTCCEEEEEEECCC-CC---------------CGGGGGCTTCCEEEEESSCCC--
T ss_pred CCCCccccChh-HhhccchhhhccCCCCCEEECcCCCcC-cc---------------hHhhcCCCCCCEEEccCCCCC--
Confidence 76666666654 33 2566666666665543 11 122444445555555433210
Q ss_pred HHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccchhhcccccccccccCEEEEccCC
Q 037847 379 QKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCR 458 (542)
Q Consensus 379 ~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~ 458 (542)
. ....+..+++|++|++++|.+.+..+..+ ..+++|+.|++++|.
T Consensus 220 --------------------------~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~--------~~l~~L~~L~L~~n~ 264 (328)
T 4fcg_A 220 --------------------------A-LGPAIHHLPKLEELDLRGCTALRNYPPIF--------GGRAPLKRLILKDCS 264 (328)
T ss_dssp --------------------------C-CCGGGGGCTTCCEEECTTCTTCCBCCCCT--------TCCCCCCEEECTTCT
T ss_pred --------------------------c-CchhhccCCCCCEEECcCCcchhhhHHHh--------cCCCCCCEEECCCCC
Confidence 0 01124445666666666666555333222 225666666666665
Q ss_pred C--CCcchhhhccCcceEEEeccchhhhcccccccccccccCCcCCCCCccceeecc
Q 037847 459 G--KDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMW 513 (542)
Q Consensus 459 ~--~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 513 (542)
. ..+..++.+++|++|+|++|.+.... |.....+++|+.+.+.
T Consensus 265 ~~~~~p~~~~~l~~L~~L~L~~n~~~~~i------------P~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 265 NLLTLPLDIHRLTQLEKLDLRGCVNLSRL------------PSLIAQLPANCIILVP 309 (328)
T ss_dssp TCCBCCTTGGGCTTCCEEECTTCTTCCCC------------CGGGGGSCTTCEEECC
T ss_pred chhhcchhhhcCCCCCEEeCCCCCchhhc------------cHHHhhccCceEEeCC
Confidence 5 33334566666666666664332221 2244555666665554
No 34
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.88 E-value=5.4e-23 Score=200.29 Aligned_cols=248 Identities=19% Similarity=0.161 Sum_probs=179.4
Q ss_pred ccceEEEeecCCcCC---CC-CCCCCCCccEEEccC-cccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCE
Q 037847 206 EGAKRISLTANGIGS---LS-EIPTCPRLVTLLLDG-NRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHH 280 (542)
Q Consensus 206 ~~l~~l~l~~~~~~~---~~-~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~ 280 (542)
.+++.+++.++.+.. +| .+.++++|++|++++ |.+....+..+..+++|++|++++|.....+|..++.+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 467888888888874 43 477888888888885 7776555555788888888888888444477888888888888
Q ss_pred EeccCCCCC-cccHHhhcCCCCCEEeccCCcccCccchhhcCCCC-CCcEEeccCccccccccCCCCccccCCCcchhHh
Q 037847 281 LDLSSTDIT-GLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFS-KLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKE 358 (542)
Q Consensus 281 L~l~~~~i~-~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (542)
|++++|.++ .+|..++.+++|++|++++|.....+|.. ++.++ +|++|++++|.+.+.+| ..
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l~~~~~---------------~~ 193 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLTGKIP---------------PT 193 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEEEECC---------------GG
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCeeeccCC---------------hH
Confidence 888888877 47888888888888888888544477776 77777 88888888887764433 22
Q ss_pred hccccCCceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccchhh
Q 037847 359 LLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEV 438 (542)
Q Consensus 359 l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 438 (542)
+..++ |+.|+++.+... ......+..+++|+.|++++|.+....+.
T Consensus 194 ~~~l~-L~~L~Ls~N~l~----------------------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~----- 239 (313)
T 1ogq_A 194 FANLN-LAFVDLSRNMLE----------------------------GDASVLFGSDKNTQKIHLAKNSLAFDLGK----- 239 (313)
T ss_dssp GGGCC-CSEEECCSSEEE----------------------------ECCGGGCCTTSCCSEEECCSSEECCBGGG-----
T ss_pred HhCCc-ccEEECcCCccc----------------------------CcCCHHHhcCCCCCEEECCCCceeeecCc-----
Confidence 34444 666666544311 00123455678899999999888653222
Q ss_pred cccccccccccCEEEEccCCC--CCcchhhhccCcceEEEeccchhhhcccccccccccccCCcCCCCCccceeecccCC
Q 037847 439 KKLFRNGFRNLNTVVLRSCRG--KDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGT 516 (542)
Q Consensus 439 ~~~~~~~l~~L~~L~L~~c~~--~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 516 (542)
...+++|++|++++|.+ ..+..+..+++|++|+|++|.+..... ....+++|+.|.+.+++
T Consensus 240 ----~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip-------------~~~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 240 ----VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-------------QGGNLQRFDVSAYANNK 302 (313)
T ss_dssp ----CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC-------------CSTTGGGSCGGGTCSSS
T ss_pred ----ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCC-------------CCccccccChHHhcCCC
Confidence 13378899999999988 556668889999999999988874432 23678889999998887
Q ss_pred cccc
Q 037847 517 NLKS 520 (542)
Q Consensus 517 ~l~~ 520 (542)
.+..
T Consensus 303 ~lc~ 306 (313)
T 1ogq_A 303 CLCG 306 (313)
T ss_dssp EEES
T ss_pred CccC
Confidence 6654
No 35
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.88 E-value=1.1e-22 Score=222.45 Aligned_cols=284 Identities=20% Similarity=0.144 Sum_probs=198.7
Q ss_pred CCCCccEEEccCcccc-cccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccCCCCC-cccHH-hhcCCCCC
Q 037847 226 TCPRLVTLLLDGNRIE-EITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDIT-GLPQE-LKALEKLR 302 (542)
Q Consensus 226 ~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~i~-~lp~~-i~~l~~L~ 302 (542)
.+++|++|++++|.+. .++..+...+++|++|++++|.....+|..++.+.+|++|++++|.+. .+|.. ++++++|+
T Consensus 267 ~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~ 346 (768)
T 3rgz_A 267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLK 346 (768)
T ss_dssp CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCC
T ss_pred ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCC
Confidence 4555666666666555 333332233488888888888544578888999999999999999887 68876 88999999
Q ss_pred EEeccCCcccCccchhhcCCCC-CCcEEeccCccccccccCCCCcc----------c-cCCCcchhHhhccccCCceeee
Q 037847 303 YLNLDYAFHLSIIPHQLISCFS-KLEVLRLCGCGRFGVIKGKEGNV----------L-CDGAEPLMKELLGLKHLNVLSW 370 (542)
Q Consensus 303 ~L~l~~~~~~~~lp~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~----------~-~~~~~~~~~~l~~L~~L~~l~~ 370 (542)
+|++++|.....+|.. +.+++ +|++|++++|.+.+.+|...... . +......+..+.++++|+.|++
T Consensus 347 ~L~Ls~n~l~~~~p~~-l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 425 (768)
T 3rgz_A 347 VLDLSFNEFSGELPES-LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHL 425 (768)
T ss_dssp EEECCSSEEEECCCTT-HHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEEC
T ss_pred EEeCcCCccCccccHH-HHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEEC
Confidence 9999999555577876 66666 88999998888776655433210 0 0111134456778888998888
Q ss_pred EecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccchhhcccccccccccC
Q 037847 371 SFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLN 450 (542)
Q Consensus 371 ~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 450 (542)
+.+.... .......-.+.++.|++..+... ......+..+++|++|++++|.+....+..+ ..+++|+
T Consensus 426 s~N~l~~--~~p~~l~~l~~L~~L~L~~n~l~--~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l--------~~l~~L~ 493 (768)
T 3rgz_A 426 SFNYLSG--TIPSSLGSLSKLRDLKLWLNMLE--GEIPQELMYVKTLETLILDFNDLTGEIPSGL--------SNCTNLN 493 (768)
T ss_dssp CSSEEES--CCCGGGGGCTTCCEEECCSSCCC--SCCCGGGGGCTTCCEEECCSSCCCSCCCGGG--------GGCTTCC
T ss_pred cCCcccC--cccHHHhcCCCCCEEECCCCccc--CcCCHHHcCCCCceEEEecCCcccCcCCHHH--------hcCCCCC
Confidence 8765321 11111222356788888776531 1223456778999999999999886544443 3489999
Q ss_pred EEEEccCCC--CCcchhhhccCcceEEEeccchhhhcccccccccccccCCcCCCCCccceeecccCCcccccCCCCCCC
Q 037847 451 TVVLRSCRG--KDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLKSVYPNPQPF 528 (542)
Q Consensus 451 ~L~L~~c~~--~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~ 528 (542)
.|++++|.+ ..+.+++.+++|++|+|++|.+.... +.....+++|+.|++.+|+-...+|......
T Consensus 494 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~------------p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~ 561 (768)
T 3rgz_A 494 WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI------------PAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ 561 (768)
T ss_dssp EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEEC------------CGGGGGCTTCCEEECCSSEEESBCCGGGGTT
T ss_pred EEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcC------------CHHHcCCCCCCEEECCCCccCCcCChHHhcc
Confidence 999999999 56667899999999999999887543 2367789999999999987655776655444
Q ss_pred CCcceE
Q 037847 529 PKLKKI 534 (542)
Q Consensus 529 p~L~~L 534 (542)
..+..+
T Consensus 562 ~~~~~~ 567 (768)
T 3rgz_A 562 SGKIAA 567 (768)
T ss_dssp TTCBCC
T ss_pred cchhhh
Confidence 444433
No 36
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.88 E-value=2.4e-22 Score=195.77 Aligned_cols=248 Identities=17% Similarity=0.156 Sum_probs=197.7
Q ss_pred CCccEEEccCccccc--ccchhhccCCCccEEEecC-CCCCCcCccccCCCCCCCEEeccCCCCC-cccHHhhcCCCCCE
Q 037847 228 PRLVTLLLDGNRIEE--ITDGFFQSLSTLRVLSLRG-NFPPSTLPSGISGLVSLHHLDLSSTDIT-GLPQELKALEKLRY 303 (542)
Q Consensus 228 ~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~-~~~~~~lp~~i~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~ 303 (542)
.+++.|+++++.+.. ..+..+..+++|++|++++ |.....+|..++.+++|++|++++|.++ .+|..+.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 579999999999875 4445599999999999995 6456688999999999999999999998 58999999999999
Q ss_pred EeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhcccc-CCceeeeEecchHHHHHhh
Q 037847 304 LNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLK-HLNVLSWSFGSSLAVQKFL 382 (542)
Q Consensus 304 L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~-~L~~l~~~~~~~~~~~~l~ 382 (542)
|++++|.....+|.. ++.+++|++|++++|.+.+.+| ..+..+. +|+.|+++.+...
T Consensus 130 L~Ls~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~p---------------~~l~~l~~~L~~L~L~~N~l~------ 187 (313)
T 1ogq_A 130 LDFSYNALSGTLPPS-ISSLPNLVGITFDGNRISGAIP---------------DSYGSFSKLFTSMTISRNRLT------ 187 (313)
T ss_dssp EECCSSEEESCCCGG-GGGCTTCCEEECCSSCCEEECC---------------GGGGCCCTTCCEEECCSSEEE------
T ss_pred EeCCCCccCCcCChH-HhcCCCCCeEECcCCcccCcCC---------------HHHhhhhhcCcEEECcCCeee------
Confidence 999999655578876 8999999999999998865443 3456666 7888888755311
Q ss_pred cCchhhccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccchhhcccccccccccCEEEEccCCC-CC
Q 037847 383 KYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRG-KD 461 (542)
Q Consensus 383 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~-~~ 461 (542)
+ .....+..++ |++|++++|.+....+..+ ..+++|+.|++++|.+ ..
T Consensus 188 ---------------~-------~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~--------~~l~~L~~L~L~~N~l~~~ 236 (313)
T 1ogq_A 188 ---------------G-------KIPPTFANLN-LAFVDLSRNMLEGDASVLF--------GSDKNTQKIHLAKNSLAFD 236 (313)
T ss_dssp ---------------E-------ECCGGGGGCC-CSEEECCSSEEEECCGGGC--------CTTSCCSEEECCSSEECCB
T ss_pred ---------------c-------cCChHHhCCc-ccEEECcCCcccCcCCHHH--------hcCCCCCEEECCCCceeee
Confidence 0 0012344444 9999999998876544433 3489999999999999 67
Q ss_pred cchhhhccCcceEEEeccchhhhcccccccccccccCCcCCCCCccceeecccCCcccccCCCCCCCCCcceEeeccCCC
Q 037847 462 LTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLKSVYPNPQPFPKLKKIQAFHCRQ 541 (542)
Q Consensus 462 ~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~p~L~~L~i~~C~~ 541 (542)
++.+..+++|++|+|++|.+.... +.....+++|++|++.++.--..+|.. ..+++|+.|++.+.+.
T Consensus 237 ~~~~~~l~~L~~L~Ls~N~l~~~~------------p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~ 303 (313)
T 1ogq_A 237 LGKVGLSKNLNGLDLRNNRIYGTL------------PQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKC 303 (313)
T ss_dssp GGGCCCCTTCCEEECCSSCCEECC------------CGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSE
T ss_pred cCcccccCCCCEEECcCCcccCcC------------ChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCC
Confidence 777888999999999999987443 236677999999999998544466554 7899999999988763
No 37
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.87 E-value=6.7e-22 Score=196.24 Aligned_cols=262 Identities=19% Similarity=0.234 Sum_probs=139.3
Q ss_pred CcccccCCcccccccceEEEeecCCcCCCCC--CCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCcc
Q 037847 193 GVKLTEAPKVEEWEGAKRISLTANGIGSLSE--IPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPS 270 (542)
Q Consensus 193 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~ 270 (542)
+..+..+|... ..+++.|++.++.+..++. +.++++|++|++++|.++.+++..+..+++|++|++++| .+..+|.
T Consensus 40 ~~~l~~iP~~~-~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~ 117 (353)
T 2z80_A 40 SGSLNSIPSGL-TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-YLSNLSS 117 (353)
T ss_dssp STTCSSCCTTC-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSSCCH
T ss_pred CCCcccccccc-cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC-cCCcCCH
Confidence 33444444311 1356666666666665542 556666666666666666555555666666666666666 4445554
Q ss_pred c-cCCCCCCCEEeccCCCCCcccH--HhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCcc
Q 037847 271 G-ISGLVSLHHLDLSSTDITGLPQ--ELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNV 347 (542)
Q Consensus 271 ~-i~~l~~L~~L~l~~~~i~~lp~--~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 347 (542)
. ++.+++|++|++++|.++.+|. .+.++++|++|++++|..+..++...++++++|++|++++|.+.+..
T Consensus 118 ~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~------- 190 (353)
T 2z80_A 118 SWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYE------- 190 (353)
T ss_dssp HHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEEC-------
T ss_pred hHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccC-------
Confidence 4 5666666666666666666654 45566666666666664444444333566666666666666544321
Q ss_pred ccCCCcchhHhhccccCCceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCc
Q 037847 348 LCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNL 427 (542)
Q Consensus 348 ~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 427 (542)
+..+..+++|+.|+++.+..... ....+..+++|++|++++|.+
T Consensus 191 --------~~~l~~l~~L~~L~l~~n~l~~~----------------------------~~~~~~~~~~L~~L~L~~n~l 234 (353)
T 2z80_A 191 --------PKSLKSIQNVSHLILHMKQHILL----------------------------LEIFVDVTSSVECLELRDTDL 234 (353)
T ss_dssp --------TTTTTTCSEEEEEEEECSCSTTH----------------------------HHHHHHHTTTEEEEEEESCBC
T ss_pred --------HHHHhccccCCeecCCCCccccc----------------------------hhhhhhhcccccEEECCCCcc
Confidence 12244455555555554432111 011122356666666666666
Q ss_pred cceeeccchhhcccccccccccCEEEEccCCC------CCcchhhhccCcceEEEeccchhhhcccccccccccccCCcC
Q 037847 428 EEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRG------KDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEH 501 (542)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~------~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~ 501 (542)
...++.... .......++.++++++.+ ..+..+..+++|++|+|++|.++.++. ...
T Consensus 235 ~~~~~~~l~-----~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~------------~~~ 297 (353)
T 2z80_A 235 DTFHFSELS-----TGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPD------------GIF 297 (353)
T ss_dssp TTCCCC-----------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCT------------TTT
T ss_pred ccccccccc-----cccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCH------------HHH
Confidence 554332221 012244556666666555 122335566667777776666665532 123
Q ss_pred CCCCccceeecccCC
Q 037847 502 NFFPRLEYLTMWRGT 516 (542)
Q Consensus 502 ~~~~~L~~L~l~~c~ 516 (542)
..+++|++|++.+++
T Consensus 298 ~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 298 DRLTSLQKIWLHTNP 312 (353)
T ss_dssp TTCTTCCEEECCSSC
T ss_pred hcCCCCCEEEeeCCC
Confidence 456666666666543
No 38
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.87 E-value=2.6e-21 Score=192.06 Aligned_cols=270 Identities=22% Similarity=0.218 Sum_probs=203.3
Q ss_pred eEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcC-ccccCCCCCCCEEeccCCC
Q 037847 209 KRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTL-PSGISGLVSLHHLDLSSTD 287 (542)
Q Consensus 209 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l-p~~i~~l~~L~~L~l~~~~ 287 (542)
...+..++.++.+|.- -.++|++|++++|.++.+++..+..+++|++|++++| .+..+ |..++.+.+|++|++++|.
T Consensus 34 ~~c~~~~~~l~~iP~~-~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (353)
T 2z80_A 34 GICKGSSGSLNSIPSG-LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYNY 111 (353)
T ss_dssp SEEECCSTTCSSCCTT-CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC
T ss_pred eEeeCCCCCccccccc-ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCCc
Confidence 3467788888888752 2368999999999999988877999999999999999 55555 5679999999999999999
Q ss_pred CCcccHH-hhcCCCCCEEeccCCcccCccch-hhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCC
Q 037847 288 ITGLPQE-LKALEKLRYLNLDYAFHLSIIPH-QLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHL 365 (542)
Q Consensus 288 i~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 365 (542)
++.+|.. ++++++|++|++++| .+..+|. ..+.++++|++|++++|...+.++ ...+.++++|
T Consensus 112 l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~--------------~~~~~~l~~L 176 (353)
T 2z80_A 112 LSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ--------------RKDFAGLTFL 176 (353)
T ss_dssp CSSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC--------------TTTTTTCCEE
T ss_pred CCcCCHhHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccC--------------HHHccCCCCC
Confidence 9999877 899999999999999 6777877 458899999999999985332221 2345677888
Q ss_pred ceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccchhhccccccc
Q 037847 366 NVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNG 445 (542)
Q Consensus 366 ~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 445 (542)
+.|+++.+... ......+..+++|++|++++|.+..++.... ..
T Consensus 177 ~~L~l~~n~l~----------------------------~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~--------~~ 220 (353)
T 2z80_A 177 EELEIDASDLQ----------------------------SYEPKSLKSIQNVSHLILHMKQHILLLEIFV--------DV 220 (353)
T ss_dssp EEEEEEETTCC----------------------------EECTTTTTTCSEEEEEEEECSCSTTHHHHHH--------HH
T ss_pred CEEECCCCCcC----------------------------ccCHHHHhccccCCeecCCCCccccchhhhh--------hh
Confidence 88888765421 0112345668899999999998866433222 23
Q ss_pred ccccCEEEEccCCC-C-Cc---chhhhccCcceEEEeccchhhhcccccccccccccCCcCCCCCccceeecccCCcccc
Q 037847 446 FRNLNTVVLRSCRG-K-DL---TWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLKS 520 (542)
Q Consensus 446 l~~L~~L~L~~c~~-~-~~---~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 520 (542)
+++|+.|++++|.+ . .+ +.....+.++.++++++.+.+..... + +.....+++|+.|++.++ .+++
T Consensus 221 ~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~----l----~~~l~~l~~L~~L~Ls~N-~l~~ 291 (353)
T 2z80_A 221 TSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ----V----MKLLNQISGLLELEFSRN-QLKS 291 (353)
T ss_dssp TTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHH----H----HHHHHTCTTCCEEECCSS-CCCC
T ss_pred cccccEEECCCCccccccccccccccccchhhccccccccccCcchhh----h----HHHHhcccCCCEEECCCC-CCCc
Confidence 78999999999988 2 22 22334677888888886655432100 0 124567999999999997 6788
Q ss_pred cCCCC-CCCCCcceEeeccCC
Q 037847 521 VYPNP-QPFPKLKKIQAFHCR 540 (542)
Q Consensus 521 ~~~~~-~~~p~L~~L~i~~C~ 540 (542)
++... ..+++|++|++++++
T Consensus 292 i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 292 VPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp CCTTTTTTCTTCCEEECCSSC
T ss_pred cCHHHHhcCCCCCEEEeeCCC
Confidence 88775 689999999999886
No 39
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.87 E-value=2.3e-21 Score=203.01 Aligned_cols=125 Identities=22% Similarity=0.183 Sum_probs=109.0
Q ss_pred eEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcC-ccccCCCCCCCEEeccCCC
Q 037847 209 KRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTL-PSGISGLVSLHHLDLSSTD 287 (542)
Q Consensus 209 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l-p~~i~~l~~L~~L~l~~~~ 287 (542)
++++++++.+..+|.... ++|++|++++|.+..+++..|..+++|++|++++| .+..+ |..|+.+++|++|++++|.
T Consensus 3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~ 80 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHNK 80 (520)
T ss_dssp CEEECTTSCCSSCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred ceEecCCCCccccccccc-ccccEEECCCCcccccChhhccccccccEEecCCC-ccCCcChHHhhcccCCCEEecCCCc
Confidence 578999999999885322 89999999999999988877999999999999999 55555 7899999999999999999
Q ss_pred CCcccHHhhcCCCCCEEeccCCcccC-ccchhhcCCCCCCcEEeccCccccc
Q 037847 288 ITGLPQELKALEKLRYLNLDYAFHLS-IIPHQLISCFSKLEVLRLCGCGRFG 338 (542)
Q Consensus 288 i~~lp~~i~~l~~L~~L~l~~~~~~~-~lp~~~~~~l~~L~~L~l~~~~~~~ 338 (542)
++.+|.. .+++|++|++++|.... .+|.. ++++++|++|++++|.+.+
T Consensus 81 l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~-~~~l~~L~~L~L~~n~l~~ 129 (520)
T 2z7x_B 81 LVKISCH--PTVNLKHLDLSFNAFDALPICKE-FGNMSQLKFLGLSTTHLEK 129 (520)
T ss_dssp CCEEECC--CCCCCSEEECCSSCCSSCCCCGG-GGGCTTCCEEEEEESSCCG
T ss_pred eeecCcc--ccCCccEEeccCCccccccchhh-hccCCcceEEEecCcccch
Confidence 9999987 89999999999994433 35665 8999999999999998754
No 40
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.87 E-value=6.2e-21 Score=195.30 Aligned_cols=302 Identities=16% Similarity=0.169 Sum_probs=209.3
Q ss_pred EEEecCcccccCCcccccccceEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCc
Q 037847 188 FLVRAGVKLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPST 267 (542)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 267 (542)
.+...+..+..+|.+..+.++++|++.+|.+..++ +..+++|++|++++|.++.++ ++.+++|++|++++| .+..
T Consensus 46 ~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L~~N-~l~~ 120 (457)
T 3bz5_A 46 SLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTN-KLTK 120 (457)
T ss_dssp EEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECCSS-CCSC
T ss_pred EEEccCCCcccChhhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee---cCCCCcCCEEECCCC-cCCe
Confidence 44445556667777888899999999999999986 899999999999999988763 789999999999999 6777
Q ss_pred CccccCCCCCCCEEeccCCCCCcccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCcc
Q 037847 268 LPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNV 347 (542)
Q Consensus 268 lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 347 (542)
+| ++.+++|++|++++|.++.+| ++.+++|++|++++|..+..++ ++.+++|++|++++|.+.+. |
T Consensus 121 l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~l-~------ 186 (457)
T 3bz5_A 121 LD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITEL-D------ 186 (457)
T ss_dssp CC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCCC-C------
T ss_pred ec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCcccee-c------
Confidence 76 899999999999999999985 8899999999999997777763 78899999999999987531 1
Q ss_pred ccCCCcchhHhhccccCCceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCc
Q 037847 348 LCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNL 427 (542)
Q Consensus 348 ~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 427 (542)
+..+++|+.|+++.+..... . ......++.|++.++.... . .+..+++|+.|++++|.+
T Consensus 187 -----------l~~l~~L~~L~l~~N~l~~~----~-l~~l~~L~~L~Ls~N~l~~--i---p~~~l~~L~~L~l~~N~l 245 (457)
T 3bz5_A 187 -----------VSQNKLLNRLNCDTNNITKL----D-LNQNIQLTFLDCSSNKLTE--I---DVTPLTQLTYFDCSVNPL 245 (457)
T ss_dssp -----------CTTCTTCCEEECCSSCCSCC----C-CTTCTTCSEEECCSSCCSC--C---CCTTCTTCSEEECCSSCC
T ss_pred -----------cccCCCCCEEECcCCcCCee----c-cccCCCCCEEECcCCcccc--c---CccccCCCCEEEeeCCcC
Confidence 55667788888776654322 1 2223566777777665422 1 156778899999999888
Q ss_pred cceeeccchhhcccccccccccCEEEEccCCC-CCcchhhhccCcceEEEeccc-hhhhcccccccccccccCCcCCCCC
Q 037847 428 EEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRG-KDLTWLVFVQNLKQLNMQGFT-MEEIISVEKLSDISEVIGSEHNFFP 505 (542)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~-~~~~~l~~l~~L~~L~L~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~ 505 (542)
..+++..+.....+. ....+|+.|++++|.. ..++ .+.+++|+.|++++|. ++.++. ....+... ....++
T Consensus 246 ~~~~~~~l~~L~~L~-l~~n~L~~L~l~~n~~~~~~~-~~~l~~L~~L~Ls~n~~l~~l~~--~~~~L~~L---~l~~~~ 318 (457)
T 3bz5_A 246 TELDVSTLSKLTTLH-CIQTDLLEIDLTHNTQLIYFQ-AEGCRKIKELDVTHNTQLYLLDC--QAAGITEL---DLSQNP 318 (457)
T ss_dssp SCCCCTTCTTCCEEE-CTTCCCSCCCCTTCTTCCEEE-CTTCTTCCCCCCTTCTTCCEEEC--TTCCCSCC---CCTTCT
T ss_pred CCcCHHHCCCCCEEe-ccCCCCCEEECCCCccCCccc-ccccccCCEEECCCCcccceecc--CCCcceEe---chhhcc
Confidence 775543322111000 0112445555555554 3332 4567888888888854 333321 11111111 344556
Q ss_pred ccceeecccCCcccccCCCCCCCCCcceEeeccC
Q 037847 506 RLEYLTMWRGTNLKSVYPNPQPFPKLKKIQAFHC 539 (542)
Q Consensus 506 ~L~~L~l~~c~~l~~~~~~~~~~p~L~~L~i~~C 539 (542)
+|+.|++.++ .++.+ ....+++|+.|++++.
T Consensus 319 ~L~~L~L~~N-~l~~l--~l~~l~~L~~L~l~~N 349 (457)
T 3bz5_A 319 KLVYLYLNNT-ELTEL--DVSHNTKLKSLSCVNA 349 (457)
T ss_dssp TCCEEECTTC-CCSCC--CCTTCTTCSEEECCSS
T ss_pred cCCEEECCCC-ccccc--ccccCCcCcEEECCCC
Confidence 7777777664 35554 2556777777777654
No 41
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.87 E-value=2.2e-21 Score=188.54 Aligned_cols=242 Identities=21% Similarity=0.255 Sum_probs=167.3
Q ss_pred EEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcC---ccccCCCCCCCEEeccCC
Q 037847 210 RISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTL---PSGISGLVSLHHLDLSST 286 (542)
Q Consensus 210 ~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l---p~~i~~l~~L~~L~l~~~ 286 (542)
.++..++.+..+|. .-.++++.|++++|.++.+++..+..+++|++|++++| .+... |..+..+.+|++|++++|
T Consensus 11 ~l~c~~~~l~~ip~-~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n 88 (306)
T 2z66_A 11 EIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDLSFN 88 (306)
T ss_dssp EEECCSSCCSSCCS-CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEECCSC
T ss_pred EEEcCCCCcccCCC-CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCC-ccCcccCcccccccccccCEEECCCC
Confidence 45666666766664 22367888888888887777776778888888888888 44433 556667788888888888
Q ss_pred CCCcccHHhhcCCCCCEEeccCCcccCccch-hhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCC
Q 037847 287 DITGLPQELKALEKLRYLNLDYAFHLSIIPH-QLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHL 365 (542)
Q Consensus 287 ~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 365 (542)
.++.+|..+..+++|++|++++| .+..++. ..+..+++|++|++++|.+.+..+ ..+..+++|
T Consensus 89 ~i~~l~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---------------~~~~~l~~L 152 (306)
T 2z66_A 89 GVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN---------------GIFNGLSSL 152 (306)
T ss_dssp SEEEEEEEEETCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCCEECST---------------TTTTTCTTC
T ss_pred ccccChhhcCCCCCCCEEECCCC-cccccccchhhhhccCCCEEECCCCcCCccch---------------hhcccCcCC
Confidence 88888777888888888888887 4444543 337778888888888877643222 224555666
Q ss_pred ceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccchhhccccccc
Q 037847 366 NVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNG 445 (542)
Q Consensus 366 ~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 445 (542)
+.|+++.+.... ......+..+++|++|++++|.+..+++..+. .
T Consensus 153 ~~L~l~~n~l~~---------------------------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--------~ 197 (306)
T 2z66_A 153 EVLKMAGNSFQE---------------------------NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN--------S 197 (306)
T ss_dssp CEEECTTCEEGG---------------------------GEECSCCTTCTTCCEEECTTSCCCEECTTTTT--------T
T ss_pred CEEECCCCcccc---------------------------ccchhHHhhCcCCCEEECCCCCcCCcCHHHhc--------C
Confidence 666665443110 00112355678899999999988876554442 3
Q ss_pred ccccCEEEEccCCC-CC-cchhhhccCcceEEEeccchhhhcccccccccccccCCcCCCCC-ccceeecccCC
Q 037847 446 FRNLNTVVLRSCRG-KD-LTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFP-RLEYLTMWRGT 516 (542)
Q Consensus 446 l~~L~~L~L~~c~~-~~-~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~L~~L~l~~c~ 516 (542)
+++|+.|++++|.+ .. ...+..+++|++|+|++|.+..... .....++ +|+.|++.+++
T Consensus 198 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~------------~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 198 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK------------QELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp CTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSS------------SSCCCCCTTCCEEECTTCC
T ss_pred CCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCH------------HHHHhhhccCCEEEccCCC
Confidence 78899999999988 32 3357788999999999988876643 2455564 89999998764
No 42
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.86 E-value=6e-21 Score=201.59 Aligned_cols=127 Identities=24% Similarity=0.263 Sum_probs=109.6
Q ss_pred ccceEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcC-ccccCCCCCCCEEecc
Q 037847 206 EGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTL-PSGISGLVSLHHLDLS 284 (542)
Q Consensus 206 ~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l-p~~i~~l~~L~~L~l~ 284 (542)
...++++++++.++.+|... .+++++|++++|.+..+++..|..+++|++|++++| .+..+ |..|+.+++|++|+++
T Consensus 31 ~~~~~l~ls~~~L~~ip~~~-~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls 108 (562)
T 3a79_B 31 ELESMVDYSNRNLTHVPKDL-PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDVS 108 (562)
T ss_dssp --CCEEECTTSCCCSCCTTS-CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECT
T ss_pred CCCcEEEcCCCCCccCCCCC-CCCcCEEECCCCCccccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCCEEECC
Confidence 34589999999999988622 389999999999999998877999999999999999 55555 7789999999999999
Q ss_pred CCCCCcccHHhhcCCCCCEEeccCCcccCccc--hhhcCCCCCCcEEeccCccccc
Q 037847 285 STDITGLPQELKALEKLRYLNLDYAFHLSIIP--HQLISCFSKLEVLRLCGCGRFG 338 (542)
Q Consensus 285 ~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp--~~~~~~l~~L~~L~l~~~~~~~ 338 (542)
+|.++.+|.. .+++|++|++++| .+..+| .. ++++++|++|++++|.+.+
T Consensus 109 ~N~l~~lp~~--~l~~L~~L~Ls~N-~l~~l~~p~~-~~~l~~L~~L~L~~n~l~~ 160 (562)
T 3a79_B 109 HNRLQNISCC--PMASLRHLDLSFN-DFDVLPVCKE-FGNLTKLTFLGLSAAKFRQ 160 (562)
T ss_dssp TSCCCEECSC--CCTTCSEEECCSS-CCSBCCCCGG-GGGCTTCCEEEEECSBCCT
T ss_pred CCcCCccCcc--ccccCCEEECCCC-CccccCchHh-hcccCcccEEecCCCcccc
Confidence 9999999987 8999999999999 566554 44 8999999999999998754
No 43
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.86 E-value=3.1e-21 Score=203.37 Aligned_cols=164 Identities=16% Similarity=0.132 Sum_probs=97.7
Q ss_pred ccccCCceeeeEecchHHHH-HhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccch--
Q 037847 360 LGLKHLNVLSWSFGSSLAVQ-KFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTE-- 436 (542)
Q Consensus 360 ~~L~~L~~l~~~~~~~~~~~-~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-- 436 (542)
..+++|+.|+++.+...... .........+.++.|++.++...........+..+++|++|++++|.+..++.....
T Consensus 331 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~ 410 (549)
T 2z81_A 331 QHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPE 410 (549)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCT
T ss_pred hcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccc
Confidence 46888888888877643211 111112233556777777654311110012356677888888888877654321110
Q ss_pred h----------hcccccccccccCEEEEccCCCCCcchhhhccCcceEEEeccchhhhcccccccccccccCCcCCCCCc
Q 037847 437 E----------VKKLFRNGFRNLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPR 506 (542)
Q Consensus 437 ~----------~~~~~~~~l~~L~~L~L~~c~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (542)
. ...++...+++|+.|++++|.+...+ ..+++|++|+|++|.++.++. ...+++
T Consensus 411 ~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~--~~l~~L~~L~Ls~N~l~~ip~--------------~~~l~~ 474 (549)
T 2z81_A 411 KMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFS--LFLPRLQELYISRNKLKTLPD--------------ASLFPV 474 (549)
T ss_dssp TCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSSCCC--------------GGGCTT
T ss_pred cccEEECCCCCcccccchhcCCceEEECCCCChhhhc--ccCChhcEEECCCCccCcCCC--------------cccCcc
Confidence 0 00011112346666666666652221 467888888888888776542 245889
Q ss_pred cceeecccCCcccccCCC-CCCCCCcceEeeccCC
Q 037847 507 LEYLTMWRGTNLKSVYPN-PQPFPKLKKIQAFHCR 540 (542)
Q Consensus 507 L~~L~l~~c~~l~~~~~~-~~~~p~L~~L~i~~C~ 540 (542)
|+.|++.++ .++.++.. ...+++|++|++++++
T Consensus 475 L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 475 LLVMKISRN-QLKSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp CCEEECCSS-CCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred CCEEecCCC-ccCCcCHHHHhcCcccCEEEecCCC
Confidence 999999986 56666554 5678999999998876
No 44
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.86 E-value=9.2e-21 Score=194.56 Aligned_cols=130 Identities=26% Similarity=0.341 Sum_probs=73.8
Q ss_pred ccceEEEeecCCcCCCC--CCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccc-cCCCCCCCEEe
Q 037847 206 EGAKRISLTANGIGSLS--EIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSG-ISGLVSLHHLD 282 (542)
Q Consensus 206 ~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~-i~~l~~L~~L~ 282 (542)
.+++.|++.+|.+..++ .+.++++|+.|++++|.+..+++..|.++++|++|++++| .+..+|.. ++.+++|++|+
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN-WLTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSBCCTTTSSSCTTCCEEE
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC-cCCccChhhhcccCCCCEEE
Confidence 45566666666555542 3555666666666666555555555556666666666666 34444432 55566666666
Q ss_pred ccCCCCCcccH-HhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccc
Q 037847 283 LSSTDITGLPQ-ELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGR 336 (542)
Q Consensus 283 l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~ 336 (542)
+++|.++.+|. .+.++++|++|++++|..+..+|...+.++++|++|++++|.+
T Consensus 154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l 208 (452)
T 3zyi_A 154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI 208 (452)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcc
Confidence 66666655543 3555666666666665555555554455566666666665554
No 45
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.86 E-value=1.1e-20 Score=193.38 Aligned_cols=236 Identities=22% Similarity=0.244 Sum_probs=141.7
Q ss_pred cCcccccCCcccccccceEEEeecCCcCCCC--CCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCc
Q 037847 192 AGVKLTEAPKVEEWEGAKRISLTANGIGSLS--EIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLP 269 (542)
Q Consensus 192 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp 269 (542)
.+..+..+|... ..+++.|++.+|.+..++ .+.++++|++|++++|.+..+++..|.++++|++|++++| .+..+|
T Consensus 51 ~~~~l~~iP~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~ 128 (440)
T 3zyj_A 51 VRKNLREVPDGI-STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-RLTTIP 128 (440)
T ss_dssp CSCCCSSCCSCC-CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS-CCSSCC
T ss_pred CCCCcCcCCCCC-CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC-cCCeeC
Confidence 334445555322 256677777777776653 4667777777777777776666666777777777777777 455554
Q ss_pred c-ccCCCCCCCEEeccCCCCCcccH-HhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCcc
Q 037847 270 S-GISGLVSLHHLDLSSTDITGLPQ-ELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNV 347 (542)
Q Consensus 270 ~-~i~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 347 (542)
. .+..+.+|++|++++|.++.+|. .+.++++|++|++++|..+..++...+.++++|++|++++|.+.. +|
T Consensus 129 ~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~------ 201 (440)
T 3zyj_A 129 NGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP------ 201 (440)
T ss_dssp TTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CC------
T ss_pred HhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-cc------
Confidence 4 46677777777777777776554 466677777777777656666666556677777777777766531 11
Q ss_pred ccCCCcchhHhhccccCCceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCc
Q 037847 348 LCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNL 427 (542)
Q Consensus 348 ~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 427 (542)
.+..+++|+.|+++.+... ......+..+++|++|++++|.+
T Consensus 202 ----------~~~~l~~L~~L~Ls~N~l~----------------------------~~~~~~~~~l~~L~~L~L~~n~l 243 (440)
T 3zyj_A 202 ----------NLTPLIKLDELDLSGNHLS----------------------------AIRPGSFQGLMHLQKLWMIQSQI 243 (440)
T ss_dssp ----------CCTTCSSCCEEECTTSCCC----------------------------EECTTTTTTCTTCCEEECTTCCC
T ss_pred ----------ccCCCcccCEEECCCCccC----------------------------ccChhhhccCccCCEEECCCCce
Confidence 1444555555555433210 01112344566677777777666
Q ss_pred cceeeccchhhcccccccccccCEEEEccCCC-CCc-chhhhccCcceEEEeccchh
Q 037847 428 EEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRG-KDL-TWLVFVQNLKQLNMQGFTME 482 (542)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~-~~~-~~l~~l~~L~~L~L~~~~l~ 482 (542)
..++...+. .+++|+.|+|++|.+ ..+ ..+..+++|+.|+|++|.+.
T Consensus 244 ~~~~~~~~~--------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 244 QVIERNAFD--------NLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CEECTTSST--------TCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred eEEChhhhc--------CCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 655443332 256677777777666 222 22456667777777666543
No 46
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.86 E-value=8.8e-21 Score=205.19 Aligned_cols=304 Identities=14% Similarity=0.094 Sum_probs=192.8
Q ss_pred eEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccCCCC
Q 037847 209 KRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDI 288 (542)
Q Consensus 209 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~i 288 (542)
+.++.+++.+..+|... .+++++|++++|.++.+++..|..+++|++|++++|......|..++.+++|++|++++|.+
T Consensus 7 ~~~~cs~~~L~~ip~~~-~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 85 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDL-PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 85 (680)
T ss_dssp SEEECCSSCCSSCCSCS-CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCC
T ss_pred CeeECCCCCcccccccc-CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCcc
Confidence 46778888888887532 27999999999999999988899999999999999954455577889999999999999999
Q ss_pred CcccH-HhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCCce
Q 037847 289 TGLPQ-ELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNV 367 (542)
Q Consensus 289 ~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~ 367 (542)
+.+|. .++++++|++|++++| .+..+|...++++++|++|++++|.+.+..|. .+.++++|+.
T Consensus 86 ~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---------------~~~~l~~L~~ 149 (680)
T 1ziw_A 86 SQLSDKTFAFCTNLTELHLMSN-SIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG---------------TQVQLENLQE 149 (680)
T ss_dssp CCCCTTTTTTCTTCSEEECCSS-CCCCCCSCTTTTCTTCCEEECCSSCCSCCCCC---------------SSSCCTTCCE
T ss_pred CccChhhhccCCCCCEEECCCC-ccCccChhHccccCCCCEEECCCCcccccCch---------------hhcccccCCE
Confidence 99987 5999999999999999 56677755589999999999999987654332 2455666777
Q ss_pred eeeEecchHH--HHHhhcCchhhccceeEEeccccCCCCCceeccccc---------------------------ccccc
Q 037847 368 LSWSFGSSLA--VQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAY---------------------------MENLQ 418 (542)
Q Consensus 368 l~~~~~~~~~--~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~---------------------------l~~L~ 418 (542)
|+++.+.... ...+.. .....++.+++..+.... .....+.. .++|+
T Consensus 150 L~L~~n~l~~~~~~~~~~--~~~~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~ 225 (680)
T 1ziw_A 150 LLLSNNKIQALKSEELDI--FANSSLKKLELSSNQIKE--FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIR 225 (680)
T ss_dssp EECCSSCCCCBCHHHHGG--GTTCEESEEECTTCCCCC--BCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCC
T ss_pred EEccCCcccccCHHHhhc--cccccccEEECCCCcccc--cChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhcccc
Confidence 7666543211 011000 001344555554432111 00011111 14556
Q ss_pred eeeecccCccceeeccchhhcccccccccccCEEEEccCCC--CCcchhhhccCcceEEEeccchhhhccccccc-----
Q 037847 419 ELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRG--KDLTWLVFVQNLKQLNMQGFTMEEIISVEKLS----- 491 (542)
Q Consensus 419 ~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~--~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~----- 491 (542)
+|++++|.+....+..+.. ...++|+.|++++|.+ ..+..++.+++|++|++++|.+..+....+..
T Consensus 226 ~L~L~~n~l~~~~~~~~~~------l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 299 (680)
T 1ziw_A 226 NLSLSNSQLSTTSNTTFLG------LKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVR 299 (680)
T ss_dssp EEECTTSCCCEECTTTTGG------GGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCC
T ss_pred EEEccCCcccccChhHhhc------cCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCcc
Confidence 6666666555433322211 0113366666666666 22234566666666666666555443211000
Q ss_pred ----------------ccccccCCcCCCCCccceeecccCCcccccC-CCCCCCCCcceEeeccCC
Q 037847 492 ----------------DISEVIGSEHNFFPRLEYLTMWRGTNLKSVY-PNPQPFPKLKKIQAFHCR 540 (542)
Q Consensus 492 ----------------~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~-~~~~~~p~L~~L~i~~C~ 540 (542)
.++.........+++|++|++.++. +..++ .....+++|++|++++|.
T Consensus 300 ~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~ 364 (680)
T 1ziw_A 300 YLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND-IPGIKSNMFTGLINLKYLSLSNSF 364 (680)
T ss_dssp EEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCC-BCCCCTTTTTTCTTCCEEECTTCB
T ss_pred EEeccchhhhcccccccccccChhhcccCCCCCEEECCCCc-cCCCChhHhccccCCcEEECCCCc
Confidence 0000001134556777777777753 44433 235568899999988763
No 47
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.86 E-value=3.7e-21 Score=188.49 Aligned_cols=223 Identities=19% Similarity=0.269 Sum_probs=171.0
Q ss_pred ccceEEEeecCCcCCCCC-CCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEecc
Q 037847 206 EGAKRISLTANGIGSLSE-IPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLS 284 (542)
Q Consensus 206 ~~l~~l~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~ 284 (542)
..++.|++.++.+..+|. +.++++|++|++++|.+..++.. ++.+++|++|++++| .+..+|..++.+.+|++|+++
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDT-MQQFAGLETLTLARN-PLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSC-GGGGTTCSEEEEESC-CCCCCCGGGGGCTTCCEEEEE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHH-HhccCCCCEEECCCC-ccccCcHHHhcCcCCCEEECC
Confidence 567888888888888764 67788899999998888866554 788889999999988 566888888888999999998
Q ss_pred CC-CCCcccHHhhc---------CCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcc
Q 037847 285 ST-DITGLPQELKA---------LEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEP 354 (542)
Q Consensus 285 ~~-~i~~lp~~i~~---------l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 354 (542)
+| .+..+|..++. +++|++|++++| .+..+|.. ++++++|++|++++|.+.+
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~-l~~l~~L~~L~L~~N~l~~---------------- 220 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPAS-IANLQNLKSLKIRNSPLSA---------------- 220 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGG-GGGCTTCCEEEEESSCCCC----------------
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchHh-hcCCCCCCEEEccCCCCCc----------------
Confidence 86 44557777654 889999999888 56688876 7888899999998887653
Q ss_pred hhHhhccccCCceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCccceeecc
Q 037847 355 LMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDS 434 (542)
Q Consensus 355 ~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 434 (542)
.+..+..+++|+.|+++.+... ......+..+++|++|++++|...+..+..
T Consensus 221 l~~~l~~l~~L~~L~Ls~n~~~----------------------------~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~ 272 (328)
T 4fcg_A 221 LGPAIHHLPKLEELDLRGCTAL----------------------------RNYPPIFGGRAPLKRLILKDCSNLLTLPLD 272 (328)
T ss_dssp CCGGGGGCTTCCEEECTTCTTC----------------------------CBCCCCTTCCCCCCEEECTTCTTCCBCCTT
T ss_pred CchhhccCCCCCEEECcCCcch----------------------------hhhHHHhcCCCCCCEEECCCCCchhhcchh
Confidence 1224667778887777654321 011224567889999999999887744433
Q ss_pred chhhcccccccccccCEEEEccCCC--CCcchhhhccCcceEEEeccchhhh
Q 037847 435 TEEVKKLFRNGFRNLNTVVLRSCRG--KDLTWLVFVQNLKQLNMQGFTMEEI 484 (542)
Q Consensus 435 ~~~~~~~~~~~l~~L~~L~L~~c~~--~~~~~l~~l~~L~~L~L~~~~l~~~ 484 (542)
+ ..+++|+.|+|++|.. ..+..++++++|+.+++..+.+..+
T Consensus 273 ~--------~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~l 316 (328)
T 4fcg_A 273 I--------HRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQL 316 (328)
T ss_dssp G--------GGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC-
T ss_pred h--------hcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHHH
Confidence 3 3489999999999988 6777899999999999988665544
No 48
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.85 E-value=1e-20 Score=209.08 Aligned_cols=291 Identities=16% Similarity=0.162 Sum_probs=202.4
Q ss_pred eEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcC-ccccCCCCCCCEEeccCCC
Q 037847 209 KRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTL-PSGISGLVSLHHLDLSSTD 287 (542)
Q Consensus 209 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l-p~~i~~l~~L~~L~l~~~~ 287 (542)
+..+.+++.+..+|. -.+++++|++++|.++.+.+..|..+++|++|++++|.....+ |..|+++.+|++|++++|.
T Consensus 7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~ 84 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK 84 (844)
T ss_dssp EEEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC
T ss_pred eEEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc
Confidence 456778888999988 6689999999999999888777999999999999999666666 7789999999999999999
Q ss_pred CCcc-cHHhhcCCCCCEEeccCCcccCccch-hhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCC
Q 037847 288 ITGL-PQELKALEKLRYLNLDYAFHLSIIPH-QLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHL 365 (542)
Q Consensus 288 i~~l-p~~i~~l~~L~~L~l~~~~~~~~lp~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 365 (542)
++.+ |..++++++|++|++++|.....+|. ..++++++|++|++++|.+.+..+ ...++++++|
T Consensus 85 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~--------------~~~~~~L~~L 150 (844)
T 3j0a_A 85 IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYL--------------HPSFGKLNSL 150 (844)
T ss_dssp CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCC--------------CGGGGTCSSC
T ss_pred CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccccc--------------chhHhhCCCC
Confidence 9986 88899999999999999954444443 347899999999999998764321 1346778888
Q ss_pred ceeeeEecchHHH--HHhhcCchhhccceeEEeccccCCCCCceeccccc------------------------------
Q 037847 366 NVLSWSFGSSLAV--QKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAY------------------------------ 413 (542)
Q Consensus 366 ~~l~~~~~~~~~~--~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~------------------------------ 413 (542)
+.|+++.+..... ..+.... ...++.+.+..+...... ...+..
T Consensus 151 ~~L~Ls~N~i~~~~~~~l~~l~--~~~L~~L~L~~n~l~~~~--~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 226 (844)
T 3j0a_A 151 KSIDFSSNQIFLVCEHELEPLQ--GKTLSFFSLAANSLYSRV--SVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSN 226 (844)
T ss_dssp CEEEEESSCCCCCCSGGGHHHH--HCSSCCCEECCSBSCCCC--CCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGG
T ss_pred CEEECCCCcCCeeCHHHccccc--CCccceEECCCCcccccc--ccchhhcCCccccCceeEEecCCCcCchhHHHHHHh
Confidence 8888876542110 0000000 023344444332211000 000011
Q ss_pred --------------------------------------ccccceeeecccCccceeeccchhhcccccccccccCEEEEc
Q 037847 414 --------------------------------------MENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLR 455 (542)
Q Consensus 414 --------------------------------------l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~ 455 (542)
.++|+.|++++|.+..+.+..+ ..+++|+.|+|+
T Consensus 227 ~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~--------~~l~~L~~L~L~ 298 (844)
T 3j0a_A 227 AISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVF--------ETLKDLKVLNLA 298 (844)
T ss_dssp TSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCS--------SSCCCCCEEEEE
T ss_pred hcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhh--------hcCCCCCEEECC
Confidence 1345555555555544333222 336778888888
Q ss_pred cCCC--CCcchhhhccCcceEEEeccchhhhcccccccccccccCCcCCCCCccceeecccCCcccccCCC-CCCCCCcc
Q 037847 456 SCRG--KDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLKSVYPN-PQPFPKLK 532 (542)
Q Consensus 456 ~c~~--~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~p~L~ 532 (542)
+|.+ ..+..+..+++|++|+|++|.++.+.. .....+++|+.|++.++ .+..++.. ...+++|+
T Consensus 299 ~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~------------~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~ 365 (844)
T 3j0a_A 299 YNKINKIADEAFYGLDNLQVLNLSYNLLGELYS------------SNFYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQ 365 (844)
T ss_dssp SCCCCEECTTTTTTCSSCCEEEEESCCCSCCCS------------CSCSSCTTCCEEECCSC-CCCCCCSSCSCSCCCCC
T ss_pred CCcCCCCChHHhcCCCCCCEEECCCCCCCccCH------------HHhcCCCCCCEEECCCC-CCCccChhhhcCCCCCC
Confidence 8877 233456778888888888877766532 36677899999999987 56666543 55689999
Q ss_pred eEeeccCC
Q 037847 533 KIQAFHCR 540 (542)
Q Consensus 533 ~L~i~~C~ 540 (542)
+|+++++.
T Consensus 366 ~L~Ls~N~ 373 (844)
T 3j0a_A 366 TLDLRDNA 373 (844)
T ss_dssp EEEEETCC
T ss_pred EEECCCCC
Confidence 99998874
No 49
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.85 E-value=3.9e-20 Score=181.73 Aligned_cols=263 Identities=17% Similarity=0.167 Sum_probs=196.2
Q ss_pred CCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCcc-ccCCCCCCCEEeccCCCCCcc-cHHhhcCCCCCEEe
Q 037847 228 PRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPS-GISGLVSLHHLDLSSTDITGL-PQELKALEKLRYLN 305 (542)
Q Consensus 228 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~-~i~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~ 305 (542)
.+++.++++++.++.+|... .++|++|++++| .+..+|. .++.+++|++|++++|.++.+ |..++++++|++|+
T Consensus 31 c~l~~l~~~~~~l~~lp~~~---~~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDL---PPDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY 106 (330)
T ss_dssp EETTEEECTTSCCCSCCCSC---CTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCCeEEEecCCCccccCccC---CCCCeEEECCCC-cCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence 47899999999888877652 378999999999 5666654 799999999999999999987 88899999999999
Q ss_pred ccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCCceeeeEecchHHHHHhhcCc
Q 037847 306 LDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYP 385 (542)
Q Consensus 306 l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~ 385 (542)
+++| .+..+|.. +. ++|++|++++|.+.+. ....+.++++|+.|+++.+............
T Consensus 107 Ls~n-~l~~l~~~-~~--~~L~~L~l~~n~l~~~---------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 167 (330)
T 1xku_A 107 LSKN-QLKELPEK-MP--KTLQELRVHENEITKV---------------RKSVFNGLNQMIVVELGTNPLKSSGIENGAF 167 (330)
T ss_dssp CCSS-CCSBCCSS-CC--TTCCEEECCSSCCCBB---------------CHHHHTTCTTCCEEECCSSCCCGGGBCTTGG
T ss_pred CCCC-cCCccChh-hc--ccccEEECCCCccccc---------------CHhHhcCCccccEEECCCCcCCccCcChhhc
Confidence 9999 67788875 33 7999999999987532 2345778899999999876543211111222
Q ss_pred hhhccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccchhhcccccccccccCEEEEccCCC-CC-cc
Q 037847 386 KLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRG-KD-LT 463 (542)
Q Consensus 386 ~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~-~~-~~ 463 (542)
.-...++.+++.++.....+. .+ .++|++|++++|.+..+.+..+ ..+++|++|++++|.+ .. ..
T Consensus 168 ~~l~~L~~L~l~~n~l~~l~~---~~--~~~L~~L~l~~n~l~~~~~~~~--------~~l~~L~~L~Ls~n~l~~~~~~ 234 (330)
T 1xku_A 168 QGMKKLSYIRIADTNITTIPQ---GL--PPSLTELHLDGNKITKVDAASL--------KGLNNLAKLGLSFNSISAVDNG 234 (330)
T ss_dssp GGCTTCCEEECCSSCCCSCCS---SC--CTTCSEEECTTSCCCEECTGGG--------TTCTTCCEEECCSSCCCEECTT
T ss_pred cCCCCcCEEECCCCccccCCc---cc--cccCCEEECCCCcCCccCHHHh--------cCCCCCCEEECCCCcCceeChh
Confidence 334567778877665322111 11 2789999999998887654444 3378999999999988 32 33
Q ss_pred hhhhccCcceEEEeccchhhhcccccccccccccCCcCCCCCccceeecccCCcccccCCCCC-------CCCCcceEee
Q 037847 464 WLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLKSVYPNPQ-------PFPKLKKIQA 536 (542)
Q Consensus 464 ~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~-------~~p~L~~L~i 536 (542)
.+..+++|++|+|++|.++.++. ....+++|++|++.++ .++.++.... ..++|+.|++
T Consensus 235 ~~~~l~~L~~L~L~~N~l~~lp~-------------~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l 300 (330)
T 1xku_A 235 SLANTPHLRELHLNNNKLVKVPG-------------GLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSL 300 (330)
T ss_dssp TGGGSTTCCEEECCSSCCSSCCT-------------TTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEEC
T ss_pred hccCCCCCCEEECCCCcCccCCh-------------hhccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEe
Confidence 58889999999999998887643 5677899999999986 4666654321 2578888888
Q ss_pred ccCC
Q 037847 537 FHCR 540 (542)
Q Consensus 537 ~~C~ 540 (542)
.+-|
T Consensus 301 ~~N~ 304 (330)
T 1xku_A 301 FSNP 304 (330)
T ss_dssp CSSS
T ss_pred ecCc
Confidence 7754
No 50
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.85 E-value=4e-20 Score=189.79 Aligned_cols=242 Identities=21% Similarity=0.244 Sum_probs=187.7
Q ss_pred ceEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcC-ccccCCCCCCCEEeccCC
Q 037847 208 AKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTL-PSGISGLVSLHHLDLSST 286 (542)
Q Consensus 208 l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l-p~~i~~l~~L~~L~l~~~ 286 (542)
...++..+..+..+|.- -.++++.|++++|.+..+++..|..+++|++|++++| .+..+ |..|..+.+|++|++++|
T Consensus 56 ~~~v~c~~~~l~~iP~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQG-IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp SCEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS
T ss_pred CcEEEECCCCcCccCCC-CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECCCC
Confidence 45677777777777742 2378999999999999988888999999999999999 45544 578899999999999999
Q ss_pred CCCcccHH-hhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCC
Q 037847 287 DITGLPQE-LKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHL 365 (542)
Q Consensus 287 ~i~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 365 (542)
.++.+|.. +..+++|++|++++| .+..+|...+.++++|++|++++|...+.++. ..+.++++|
T Consensus 134 ~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~--------------~~~~~l~~L 198 (452)
T 3zyi_A 134 WLTVIPSGAFEYLSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEYISE--------------GAFEGLFNL 198 (452)
T ss_dssp CCSBCCTTTSSSCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECT--------------TTTTTCTTC
T ss_pred cCCccChhhhcccCCCCEEECCCC-CcceeCHhHHhcCCcccEEeCCCCCCccccCh--------------hhccCCCCC
Confidence 99998765 788999999999999 67788876689999999999998766544332 235567777
Q ss_pred ceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccchhhccccccc
Q 037847 366 NVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNG 445 (542)
Q Consensus 366 ~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 445 (542)
+.|+++.+... ....+..+++|++|++++|.+..+.+..+. .
T Consensus 199 ~~L~L~~n~l~------------------------------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--------~ 240 (452)
T 3zyi_A 199 KYLNLGMCNIK------------------------------DMPNLTPLVGLEELEMSGNHFPEIRPGSFH--------G 240 (452)
T ss_dssp CEEECTTSCCS------------------------------SCCCCTTCTTCCEEECTTSCCSEECGGGGT--------T
T ss_pred CEEECCCCccc------------------------------ccccccccccccEEECcCCcCcccCccccc--------C
Confidence 77777644311 012355678899999999988876555443 3
Q ss_pred ccccCEEEEccCCC--CCcchhhhccCcceEEEeccchhhhcccccccccccccCCcCCCCCccceeecccCC
Q 037847 446 FRNLNTVVLRSCRG--KDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGT 516 (542)
Q Consensus 446 l~~L~~L~L~~c~~--~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 516 (542)
+++|+.|++++|.+ ..+..+..+++|++|+|++|.++.++. .....+++|+.|++.+++
T Consensus 241 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~------------~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 241 LSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPH------------DLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT------------TSSTTCTTCCEEECCSSC
T ss_pred ccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccCh------------HHhccccCCCEEEccCCC
Confidence 78899999999988 334457788999999999988887653 245668889999888754
No 51
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.85 E-value=6.1e-20 Score=187.72 Aligned_cols=242 Identities=20% Similarity=0.262 Sum_probs=189.0
Q ss_pred ceEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcC-ccccCCCCCCCEEeccCC
Q 037847 208 AKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTL-PSGISGLVSLHHLDLSST 286 (542)
Q Consensus 208 l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l-p~~i~~l~~L~~L~l~~~ 286 (542)
.+.++..+..+..+|.. -.++++.|++++|.+..+++..|..+++|++|++++| .+..+ |..|..+.+|++|++++|
T Consensus 45 ~~~v~c~~~~l~~iP~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDG-ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp SCEEECCSCCCSSCCSC-CCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEECCSS
T ss_pred CCEEEeCCCCcCcCCCC-CCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCC-cCCccChhhccCCccCCEEECCCC
Confidence 45677778888888752 2378999999999999988888999999999999999 55554 467899999999999999
Q ss_pred CCCcccH-HhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCC
Q 037847 287 DITGLPQ-ELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHL 365 (542)
Q Consensus 287 ~i~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 365 (542)
.++.+|. .+..+++|++|++++| .+..+|...+.++++|++|++++|...+.++. ..+.++++|
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~--------------~~~~~l~~L 187 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELKRLSYISE--------------GAFEGLSNL 187 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECT--------------TTTTTCSSC
T ss_pred cCCeeCHhHhhccccCceeeCCCC-cccccCHHHhhhCcccCEeCCCCCCCcceeCc--------------chhhccccc
Confidence 9999876 5889999999999999 67778776689999999999998765543332 235667778
Q ss_pred ceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccchhhccccccc
Q 037847 366 NVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNG 445 (542)
Q Consensus 366 ~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 445 (542)
+.|+++.+... ....+..+++|++|++++|.+..+++..+. .
T Consensus 188 ~~L~L~~n~l~------------------------------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--------~ 229 (440)
T 3zyj_A 188 RYLNLAMCNLR------------------------------EIPNLTPLIKLDELDLSGNHLSAIRPGSFQ--------G 229 (440)
T ss_dssp CEEECTTSCCS------------------------------SCCCCTTCSSCCEEECTTSCCCEECTTTTT--------T
T ss_pred CeecCCCCcCc------------------------------cccccCCCcccCEEECCCCccCccChhhhc--------c
Confidence 77777654311 012355678899999999988876555443 3
Q ss_pred ccccCEEEEccCCC--CCcchhhhccCcceEEEeccchhhhcccccccccccccCCcCCCCCccceeecccCC
Q 037847 446 FRNLNTVVLRSCRG--KDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGT 516 (542)
Q Consensus 446 l~~L~~L~L~~c~~--~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 516 (542)
+++|+.|++++|.+ ..+..+..+++|++|+|++|.++.++. .....+++|+.|++.+++
T Consensus 230 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~------------~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 230 LMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPH------------DLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCT------------TTTSSCTTCCEEECCSSC
T ss_pred CccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccCh------------hHhccccCCCEEEcCCCC
Confidence 78999999999988 334457788999999999998887753 245668899999988754
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.84 E-value=2.6e-20 Score=180.91 Aligned_cols=240 Identities=20% Similarity=0.210 Sum_probs=186.4
Q ss_pred ecCcccccCCcccccccceEEEeecCCcCCCCC--CCCCCCccEEEccCccccccc--chhhccCCCccEEEecCCCCCC
Q 037847 191 RAGVKLTEAPKVEEWEGAKRISLTANGIGSLSE--IPTCPRLVTLLLDGNRIEEIT--DGFFQSLSTLRVLSLRGNFPPS 266 (542)
Q Consensus 191 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~ 266 (542)
..+..+..+|.. -..++++|++.++.+..++. +.++++|++|++++|.+.... +..+..+++|++|++++| .+.
T Consensus 14 c~~~~l~~ip~~-~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~ 91 (306)
T 2z66_A 14 CNSKGLTSVPTG-IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVI 91 (306)
T ss_dssp CCSSCCSSCCSC-CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC-SEE
T ss_pred cCCCCcccCCCC-CCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC-ccc
Confidence 344556666652 23689999999999998875 789999999999999887542 334667999999999999 677
Q ss_pred cCccccCCCCCCCEEeccCCCCCcccH--HhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccc-cccCC
Q 037847 267 TLPSGISGLVSLHHLDLSSTDITGLPQ--ELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFG-VIKGK 343 (542)
Q Consensus 267 ~lp~~i~~l~~L~~L~l~~~~i~~lp~--~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~-~~~~~ 343 (542)
.+|..+..+++|++|++++|.++.++. .+..+++|++|++++|. +...+...+..+++|++|++++|.+.+ .+|
T Consensus 92 ~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-- 168 (306)
T 2z66_A 92 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFLP-- 168 (306)
T ss_dssp EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC-CEECSTTTTTTCTTCCEEECTTCEEGGGEEC--
T ss_pred cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCc-CCccchhhcccCcCCCEEECCCCccccccch--
Confidence 899889999999999999999988764 78999999999999995 444444448899999999999998754 222
Q ss_pred CCccccCCCcchhHhhccccCCceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeec
Q 037847 344 EGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELE 423 (542)
Q Consensus 344 ~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~ 423 (542)
..+..+++|+.|+++.+... ......+..+++|++|+++
T Consensus 169 -------------~~~~~l~~L~~L~Ls~n~l~----------------------------~~~~~~~~~l~~L~~L~L~ 207 (306)
T 2z66_A 169 -------------DIFTELRNLTFLDLSQCQLE----------------------------QLSPTAFNSLSSLQVLNMS 207 (306)
T ss_dssp -------------SCCTTCTTCCEEECTTSCCC----------------------------EECTTTTTTCTTCCEEECT
T ss_pred -------------hHHhhCcCCCEEECCCCCcC----------------------------CcCHHHhcCCCCCCEEECC
Confidence 23566778888887754311 1112345678899999999
Q ss_pred ccCccceeeccchhhcccccccccccCEEEEccCCC--CCcchhhhcc-CcceEEEeccchhhh
Q 037847 424 SCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRG--KDLTWLVFVQ-NLKQLNMQGFTMEEI 484 (542)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~--~~~~~l~~l~-~L~~L~L~~~~l~~~ 484 (542)
+|.+..++...+ ..+++|+.|++++|.+ ..+..+..++ +|++|+|++|.+...
T Consensus 208 ~N~l~~~~~~~~--------~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 208 HNNFFSLDTFPY--------KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp TSCCSBCCSGGG--------TTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred CCccCccChhhc--------cCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 999987654333 3489999999999999 4445577775 999999999887654
No 53
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.84 E-value=3.6e-20 Score=182.10 Aligned_cols=262 Identities=18% Similarity=0.176 Sum_probs=197.3
Q ss_pred CCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcC-ccccCCCCCCCEEeccCCCCCcc-cHHhhcCCCCCEEe
Q 037847 228 PRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTL-PSGISGLVSLHHLDLSSTDITGL-PQELKALEKLRYLN 305 (542)
Q Consensus 228 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l-p~~i~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~ 305 (542)
.+++.++++++.++.+|... .++|++|++++| .+..+ |..++.+.+|++|++++|.++.+ |..++++++|++|+
T Consensus 33 c~l~~l~~~~~~l~~ip~~~---~~~l~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEI---SPDTTLLDLQNN-DISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp EETTEEECCSSCCSSCCSCC---CTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred ccCCEEECCCCCccccCCCC---CCCCeEEECCCC-cCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence 36899999999998887653 378999999999 56665 55799999999999999999996 77899999999999
Q ss_pred ccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCCceeeeEecchHHHHHhhcCc
Q 037847 306 LDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYP 385 (542)
Q Consensus 306 l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~ 385 (542)
+++| .+..+|.. +. ++|++|++++|.+.+.. ...+.++++|+.|+++.+............
T Consensus 109 L~~n-~l~~l~~~-~~--~~L~~L~l~~n~i~~~~---------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 169 (332)
T 2ft3_A 109 ISKN-HLVEIPPN-LP--SSLVELRIHDNRIRKVP---------------KGVFSGLRNMNCIEMGGNPLENSGFEPGAF 169 (332)
T ss_dssp CCSS-CCCSCCSS-CC--TTCCEEECCSSCCCCCC---------------SGGGSSCSSCCEEECCSCCCBGGGSCTTSS
T ss_pred CCCC-cCCccCcc-cc--ccCCEEECCCCccCccC---------------HhHhCCCccCCEEECCCCccccCCCCcccc
Confidence 9999 67788876 33 89999999999875321 123677889999999877543211111111
Q ss_pred hhhccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccchhhcccccccccccCEEEEccCCC-CCc-c
Q 037847 386 KLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRG-KDL-T 463 (542)
Q Consensus 386 ~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~-~~~-~ 463 (542)
... .++.+++........+. .+ .++|++|++++|.+..+++..+ ..+++|+.|++++|.+ ... .
T Consensus 170 ~~l-~L~~L~l~~n~l~~l~~---~~--~~~L~~L~l~~n~i~~~~~~~l--------~~l~~L~~L~L~~N~l~~~~~~ 235 (332)
T 2ft3_A 170 DGL-KLNYLRISEAKLTGIPK---DL--PETLNELHLDHNKIQAIELEDL--------LRYSKLYRLGLGHNQIRMIENG 235 (332)
T ss_dssp CSC-CCSCCBCCSSBCSSCCS---SS--CSSCSCCBCCSSCCCCCCTTSS--------TTCTTCSCCBCCSSCCCCCCTT
T ss_pred cCC-ccCEEECcCCCCCccCc---cc--cCCCCEEECCCCcCCccCHHHh--------cCCCCCCEEECCCCcCCcCChh
Confidence 111 56677776654322111 11 2699999999999987655444 3389999999999999 433 3
Q ss_pred hhhhccCcceEEEeccchhhhcccccccccccccCCcCCCCCccceeecccCCcccccCCCC-------CCCCCcceEee
Q 037847 464 WLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLKSVYPNP-------QPFPKLKKIQA 536 (542)
Q Consensus 464 ~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~-------~~~p~L~~L~i 536 (542)
.+..+++|++|+|++|.++.++. ....+++|+.|++.++ .+..++... ..+++|++|++
T Consensus 236 ~~~~l~~L~~L~L~~N~l~~lp~-------------~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l 301 (332)
T 2ft3_A 236 SLSFLPTLRELHLDNNKLSRVPA-------------GLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISL 301 (332)
T ss_dssp GGGGCTTCCEEECCSSCCCBCCT-------------TGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEEC
T ss_pred HhhCCCCCCEEECCCCcCeecCh-------------hhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEe
Confidence 68899999999999999987753 5677999999999986 466665431 12678999999
Q ss_pred ccCC
Q 037847 537 FHCR 540 (542)
Q Consensus 537 ~~C~ 540 (542)
.++|
T Consensus 302 ~~N~ 305 (332)
T 2ft3_A 302 FNNP 305 (332)
T ss_dssp CSSS
T ss_pred ecCc
Confidence 9876
No 54
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.83 E-value=1e-19 Score=195.11 Aligned_cols=145 Identities=30% Similarity=0.372 Sum_probs=120.3
Q ss_pred CcccccCCcccccccceEEEeecCCcCCCC--CCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCcc
Q 037847 193 GVKLTEAPKVEEWEGAKRISLTANGIGSLS--EIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPS 270 (542)
Q Consensus 193 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~ 270 (542)
+.+++.+|.-- ...+++|++++|.++.++ .|.++++|++|++++|.++.+++..|.++++|++|+|++| .+..+|.
T Consensus 40 ~~~l~~vP~~l-p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~ 117 (635)
T 4g8a_A 40 ELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLAL 117 (635)
T ss_dssp TSCCSSCCSSS-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECG
T ss_pred CCCcCccCCCC-CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC-cCCCCCH
Confidence 44566676422 257899999999999886 4899999999999999999998888999999999999999 6777764
Q ss_pred -ccCCCCCCCEEeccCCCCCcccH-HhhcCCCCCEEeccCCcccC-ccchhhcCCCCCCcEEeccCccccccc
Q 037847 271 -GISGLVSLHHLDLSSTDITGLPQ-ELKALEKLRYLNLDYAFHLS-IIPHQLISCFSKLEVLRLCGCGRFGVI 340 (542)
Q Consensus 271 -~i~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~~~-~lp~~~~~~l~~L~~L~l~~~~~~~~~ 340 (542)
.|+++.+|++|++++|.++.+|. .++++++|++|++++|.... .+|.. ++.+++|++|++++|.+.+..
T Consensus 118 ~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~-~~~l~~L~~L~L~~N~l~~~~ 189 (635)
T 4g8a_A 118 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIY 189 (635)
T ss_dssp GGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECCSSCCCEEC
T ss_pred HHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchh-hccchhhhhhcccCccccccc
Confidence 57999999999999999999876 48999999999999994322 34554 788999999999998876543
No 55
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.83 E-value=2.7e-20 Score=178.84 Aligned_cols=221 Identities=19% Similarity=0.205 Sum_probs=145.5
Q ss_pred eEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcC-ccccCCCCCCCEEeccCCC
Q 037847 209 KRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTL-PSGISGLVSLHHLDLSSTD 287 (542)
Q Consensus 209 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l-p~~i~~l~~L~~L~l~~~~ 287 (542)
+.++..++.+..+|. ...++++.|++++|.++.+++..+..+++|++|++++| .+..+ |..++.+++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp CEEECCSSCCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCcCCcccCCc-CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCCC
Confidence 455666666666653 23457777777777777776666777777777777777 44444 6667777777777777775
Q ss_pred -CCcc-cHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCC
Q 037847 288 -ITGL-PQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHL 365 (542)
Q Consensus 288 -i~~l-p~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 365 (542)
++.+ |..+..+++|++|++++| .+..++...+.++++|++|++++|.+.+..+ ..+..+++|
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---------------~~~~~l~~L 155 (285)
T 1ozn_A 92 QLRSVDPATFHGLGRLHTLHLDRC-GLQELGPGLFRGLAALQYLYLQDNALQALPD---------------DTFRDLGNL 155 (285)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCT---------------TTTTTCTTC
T ss_pred CccccCHHHhcCCcCCCEEECCCC-cCCEECHhHhhCCcCCCEEECCCCcccccCH---------------hHhccCCCc
Confidence 6665 556777777777777777 4444543346777777777777776543211 124455666
Q ss_pred ceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccchhhccccccc
Q 037847 366 NVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNG 445 (542)
Q Consensus 366 ~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 445 (542)
+.|+++.+... ......+..+++|++|++++|.+....+..+ ..
T Consensus 156 ~~L~l~~n~l~----------------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--------~~ 199 (285)
T 1ozn_A 156 THLFLHGNRIS----------------------------SVPERAFRGLHSLDRLLLHQNRVAHVHPHAF--------RD 199 (285)
T ss_dssp CEEECCSSCCC----------------------------EECTTTTTTCTTCCEEECCSSCCCEECTTTT--------TT
T ss_pred cEEECCCCccc----------------------------ccCHHHhcCccccCEEECCCCcccccCHhHc--------cC
Confidence 66666543211 0011235567889999999988877654444 23
Q ss_pred ccccCEEEEccCCC-CCc-chhhhccCcceEEEeccchhh
Q 037847 446 FRNLNTVVLRSCRG-KDL-TWLVFVQNLKQLNMQGFTMEE 483 (542)
Q Consensus 446 l~~L~~L~L~~c~~-~~~-~~l~~l~~L~~L~L~~~~l~~ 483 (542)
+++|+.|++++|.+ ..+ ..+..+++|++|+|++|.+..
T Consensus 200 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 200 LGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp CTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred cccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 78899999999988 433 237788999999999887653
No 56
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.82 E-value=2e-19 Score=189.66 Aligned_cols=248 Identities=21% Similarity=0.184 Sum_probs=125.0
Q ss_pred cCcccccCCcccccccceEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccc
Q 037847 192 AGVKLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSG 271 (542)
Q Consensus 192 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~ 271 (542)
.+..+..+|.... .+++.|++.+|.+..+|. .+++|++|++++|.++.++. .+++|++|++++| .+..+|.
T Consensus 48 s~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N-~l~~l~~- 118 (622)
T 3g06_A 48 GESGLTTLPDCLP-AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFSN-PLTHLPA- 118 (622)
T ss_dssp CSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC----CCTTCCEEEECSC-CCCCCCC-
T ss_pred cCCCcCccChhhC-CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECcCC-cCCCCCC-
Confidence 3444444443222 455555555555555544 44555555555555554443 3455555555555 4444543
Q ss_pred cCCCCCCCEEeccCCCCCcccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCC
Q 037847 272 ISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDG 351 (542)
Q Consensus 272 i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 351 (542)
.+.+|++|++++|.++.+|.. +++|++|++++| .+..+|.. +++|+.|++++|.+.+. |
T Consensus 119 --~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N-~l~~l~~~----~~~L~~L~L~~N~l~~l-~---------- 177 (622)
T 3g06_A 119 --LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPAL----PSELCKLWAYNNQLTSL-P---------- 177 (622)
T ss_dssp --CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSCCCCC----CTTCCEEECCSSCCSCC-C----------
T ss_pred --CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCC-cCCCcCCc----cCCCCEEECCCCCCCCC-c----------
Confidence 344555555555555555542 355555555555 34444431 24455555555544320 0
Q ss_pred CcchhHhhccccCCceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCcccee
Q 037847 352 AEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMK 431 (542)
Q Consensus 352 ~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 431 (542)
..+++|+.|+++.+.... ... .+++|+.|++++|.+..++
T Consensus 178 --------~~~~~L~~L~Ls~N~l~~------l~~--------------------------~~~~L~~L~L~~N~l~~l~ 217 (622)
T 3g06_A 178 --------MLPSGLQELSVSDNQLAS------LPT--------------------------LPSELYKLWAYNNRLTSLP 217 (622)
T ss_dssp --------CCCTTCCEEECCSSCCSC------CCC--------------------------CCTTCCEEECCSSCCSSCC
T ss_pred --------ccCCCCcEEECCCCCCCC------CCC--------------------------ccchhhEEECcCCcccccC
Confidence 123445555554432110 001 1345666666666555432
Q ss_pred eccchhhcccccccccccCEEEEccCCCCCcchhhhccCcceEEEeccchhhhcccccccccccccCCcCCCCCccceee
Q 037847 432 IDSTEEVKKLFRNGFRNLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLT 511 (542)
Q Consensus 432 ~~~~~~~~~~~~~~l~~L~~L~L~~c~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 511 (542)
. .+++|+.|++++|.+..++ ..+++|++|+|++|.++.++. .+++|+.|+
T Consensus 218 ~------------~~~~L~~L~Ls~N~L~~lp--~~l~~L~~L~Ls~N~L~~lp~----------------~~~~L~~L~ 267 (622)
T 3g06_A 218 A------------LPSGLKELIVSGNRLTSLP--VLPSELKELMVSGNRLTSLPM----------------LPSGLLSLS 267 (622)
T ss_dssp C------------CCTTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC----------------CCTTCCEEE
T ss_pred C------------CCCCCCEEEccCCccCcCC--CCCCcCcEEECCCCCCCcCCc----------------ccccCcEEe
Confidence 1 1456666666666653333 345666666666666654421 356666666
Q ss_pred cccCCcccccCCCCCCCCCcceEeeccCC
Q 037847 512 MWRGTNLKSVYPNPQPFPKLKKIQAFHCR 540 (542)
Q Consensus 512 l~~c~~l~~~~~~~~~~p~L~~L~i~~C~ 540 (542)
+.+| .+..+|.....+++|+.|++++++
T Consensus 268 Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 268 VYRN-QLTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp CCSS-CCCSCCGGGGGSCTTCEEECCSCC
T ss_pred CCCC-CCCcCCHHHhhccccCEEEecCCC
Confidence 6665 455555555556666666666654
No 57
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.82 E-value=4.9e-21 Score=186.94 Aligned_cols=261 Identities=21% Similarity=0.202 Sum_probs=167.2
Q ss_pred ccceEEEeecCCcCCCC--CCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEec
Q 037847 206 EGAKRISLTANGIGSLS--EIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDL 283 (542)
Q Consensus 206 ~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l 283 (542)
.+++.|++.+|.+..++ .+.++++|++|++++|.+...++ +..+++|++|++++| .+..+| ..++|++|++
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n-~l~~l~----~~~~L~~L~l 106 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN-YVQELL----VGPSIETLHA 106 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSS-EEEEEE----ECTTCCEEEC
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCC-cccccc----CCCCcCEEEC
Confidence 46777777777777664 36677777777777777766554 677777777777777 444444 2367777777
Q ss_pred cCCCCCcccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhh-ccc
Q 037847 284 SSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKEL-LGL 362 (542)
Q Consensus 284 ~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~L 362 (542)
++|.++.++.. .+++|++|++++| .+..++...++.+++|++|++++|.+.+..+ ..+ ..+
T Consensus 107 ~~n~l~~~~~~--~~~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---------------~~~~~~l 168 (317)
T 3o53_A 107 ANNNISRVSCS--RGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTVNF---------------AELAASS 168 (317)
T ss_dssp CSSCCSEEEEC--CCSSCEEEECCSS-CCCSGGGBCTGGGSSEEEEECTTSCCCEEEG---------------GGGGGGT
T ss_pred CCCccCCcCcc--ccCCCCEEECCCC-CCCCccchhhhccCCCCEEECCCCCCCcccH---------------HHHhhcc
Confidence 77777776543 3677777777777 4555544346667777777777776643211 122 245
Q ss_pred cCCceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccchhhcccc
Q 037847 363 KHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLF 442 (542)
Q Consensus 363 ~~L~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 442 (542)
++|+.|+++.+... .......+++|++|++++|.+..++.. +
T Consensus 169 ~~L~~L~L~~N~l~------------------------------~~~~~~~l~~L~~L~Ls~N~l~~l~~~-~------- 210 (317)
T 3o53_A 169 DTLEHLNLQYNFIY------------------------------DVKGQVVFAKLKTLDLSSNKLAFMGPE-F------- 210 (317)
T ss_dssp TTCCEEECTTSCCC------------------------------EEECCCCCTTCCEEECCSSCCCEECGG-G-------
T ss_pred CcCCEEECCCCcCc------------------------------ccccccccccCCEEECCCCcCCcchhh-h-------
Confidence 56666666543311 011122367888888888888775443 2
Q ss_pred cccccccCEEEEccCCC-CCcchhhhccCcceEEEeccchhhhcccccccccccccCCcCCCCCccceeecccCCccccc
Q 037847 443 RNGFRNLNTVVLRSCRG-KDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLKSV 521 (542)
Q Consensus 443 ~~~l~~L~~L~L~~c~~-~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 521 (542)
..+++|+.|++++|.+ ..+..+..+++|++|+|++|.+..... +.....+++|+.|.+.++..++..
T Consensus 211 -~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~-----------~~~~~~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 211 -QSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTL-----------RDFFSKNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp -GGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHH-----------HHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred -cccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCH-----------HHHHhccccceEEECCCchhccCC
Confidence 2378888888888888 545556778888888888887762111 124556788888888877776665
Q ss_pred CCCCCCCCCcceEeeccCCC
Q 037847 522 YPNPQPFPKLKKIQAFHCRQ 541 (542)
Q Consensus 522 ~~~~~~~p~L~~L~i~~C~~ 541 (542)
.......+.+....-.+|..
T Consensus 279 ~~~~~~~~~~~~~~~~cc~~ 298 (317)
T 3o53_A 279 NEEECTVPTLGHYGAYCCED 298 (317)
T ss_dssp SSCCCSSTTCEEETTEEEBC
T ss_pred chhccCCCceecccceeecc
Confidence 44444445555544445544
No 58
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.82 E-value=5e-20 Score=179.73 Aligned_cols=240 Identities=15% Similarity=0.088 Sum_probs=175.6
Q ss_pred CCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccCCCCCcccHHhhcCCCCCE
Q 037847 224 IPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRY 303 (542)
Q Consensus 224 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~ 303 (542)
+..+++|+.|++++|.++.+++..+..+++|++|++++| .+...+. ++.+++|++|++++|.++.+| ..++|++
T Consensus 30 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~----~~~~L~~ 103 (317)
T 3o53_A 30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNNNYVQELL----VGPSIET 103 (317)
T ss_dssp HTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTS-CCEEEEE-ETTCTTCCEEECCSSEEEEEE----ECTTCCE
T ss_pred hccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCC-cCCcchh-hhhcCCCCEEECcCCcccccc----CCCCcCE
Confidence 345678999999999888888777889999999999998 5555553 888999999999999888776 3488999
Q ss_pred EeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCCceeeeEecchHHHHHhhc
Q 037847 304 LNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLK 383 (542)
Q Consensus 304 L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~ 383 (542)
|++++| .+..++. ..+++|++|++++|.+.+..+ ..+..+++|+.|+++.+...
T Consensus 104 L~l~~n-~l~~~~~---~~~~~L~~L~l~~N~l~~~~~---------------~~~~~l~~L~~L~Ls~N~l~------- 157 (317)
T 3o53_A 104 LHAANN-NISRVSC---SRGQGKKNIYLANNKITMLRD---------------LDEGCRSRVQYLDLKLNEID------- 157 (317)
T ss_dssp EECCSS-CCSEEEE---CCCSSCEEEECCSSCCCSGGG---------------BCTGGGSSEEEEECTTSCCC-------
T ss_pred EECCCC-ccCCcCc---cccCCCCEEECCCCCCCCccc---------------hhhhccCCCCEEECCCCCCC-------
Confidence 999998 5666654 346789999999888754322 12455667777776644311
Q ss_pred CchhhccceeEEeccccCCCCCceeccc-ccccccceeeecccCccceeeccchhhcccccccccccCEEEEccCCC-CC
Q 037847 384 YPKLVSITQSVWVECGTYTRPPFNVLHL-AYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRG-KD 461 (542)
Q Consensus 384 ~~~~~~~l~~l~l~~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~-~~ 461 (542)
......+ ..+++|++|++++|.+..++.. ..+++|+.|++++|.+ ..
T Consensus 158 ---------------------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~----------~~l~~L~~L~Ls~N~l~~l 206 (317)
T 3o53_A 158 ---------------------TVNFAELAASSDTLEHLNLQYNFIYDVKGQ----------VVFAKLKTLDLSSNKLAFM 206 (317)
T ss_dssp ---------------------EEEGGGGGGGTTTCCEEECTTSCCCEEECC----------CCCTTCCEEECCSSCCCEE
T ss_pred ---------------------cccHHHHhhccCcCCEEECCCCcCcccccc----------cccccCCEEECCCCcCCcc
Confidence 1111222 3578999999999998875322 2278999999999998 55
Q ss_pred cchhhhccCcceEEEeccchhhhcccccccccccccCCcCCCCCccceeecccCCcc-cccCCCCCCCCCcceEeeccC
Q 037847 462 LTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNL-KSVYPNPQPFPKLKKIQAFHC 539 (542)
Q Consensus 462 ~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l-~~~~~~~~~~p~L~~L~i~~C 539 (542)
++.+..+++|++|+|++|.++.++. ....+++|+.|++.+++-- ..++.....+++|+.|++.+|
T Consensus 207 ~~~~~~l~~L~~L~L~~N~l~~l~~-------------~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 207 GPEFQSAAGVTWISLRNNKLVLIEK-------------ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp CGGGGGGTTCSEEECTTSCCCEECT-------------TCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hhhhcccCcccEEECcCCcccchhh-------------HhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence 5668889999999999998887643 5667899999999987643 233444556788888777644
No 59
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.82 E-value=7.7e-19 Score=179.60 Aligned_cols=120 Identities=16% Similarity=0.179 Sum_probs=63.3
Q ss_pred ccceEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccC
Q 037847 206 EGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSS 285 (542)
Q Consensus 206 ~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~ 285 (542)
.+++.+++.+|.+..+|.+.++++|++|++++|.++.++.. ..+|++|++++| .+..+| .++.+++|++|++++
T Consensus 131 ~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~----~~~L~~L~L~~n-~l~~l~-~~~~l~~L~~L~l~~ 204 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNN-QLEELP-ELQNLPFLTAIYADN 204 (454)
T ss_dssp TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCS
T ss_pred CCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcccCCC----cccccEEECcCC-cCCcCc-cccCCCCCCEEECCC
Confidence 34555555555555555555555555555555555443321 235555555555 344444 455555555555555
Q ss_pred CCCCcccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCcccc
Q 037847 286 TDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRF 337 (542)
Q Consensus 286 ~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~ 337 (542)
|.++.+|... .+|++|++++| .+..+|. ++.+++|++|++++|.+.
T Consensus 205 N~l~~l~~~~---~~L~~L~l~~n-~l~~lp~--~~~l~~L~~L~l~~N~l~ 250 (454)
T 1jl5_A 205 NSLKKLPDLP---LSLESIVAGNN-ILEELPE--LQNLPFLTTIYADNNLLK 250 (454)
T ss_dssp SCCSSCCCCC---TTCCEEECCSS-CCSSCCC--CTTCTTCCEEECCSSCCS
T ss_pred CcCCcCCCCc---CcccEEECcCC-cCCcccc--cCCCCCCCEEECCCCcCC
Confidence 5555554322 35555555555 3445553 555666666666655543
No 60
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.81 E-value=1.9e-18 Score=176.62 Aligned_cols=303 Identities=16% Similarity=0.152 Sum_probs=151.3
Q ss_pred EEecCcccccCCcccccccceEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcC
Q 037847 189 LVRAGVKLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTL 268 (542)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l 268 (542)
+...+..+..+|.. ..+++.+++.+|.+..+|.. +++|++|++++|.++.++.. .++|++|++++| .+..+
T Consensus 76 L~l~~~~l~~lp~~--~~~L~~L~l~~n~l~~lp~~--~~~L~~L~l~~n~l~~l~~~----~~~L~~L~L~~n-~l~~l 146 (454)
T 1jl5_A 76 LELNNLGLSSLPEL--PPHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSDL----PPLLEYLGVSNN-QLEKL 146 (454)
T ss_dssp EECTTSCCSCCCSC--CTTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCSC----CTTCCEEECCSS-CCSSC
T ss_pred EEecCCccccCCCC--cCCCCEEEccCCcCCccccc--cCCCcEEECCCCccCcccCC----CCCCCEEECcCC-CCCCC
Confidence 33344444444442 24666667766666666542 35666666666665544321 146666666666 44456
Q ss_pred ccccCCCCCCCEEeccCCCCCcccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCc--
Q 037847 269 PSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGN-- 346 (542)
Q Consensus 269 p~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-- 346 (542)
| .++.+.+|++|++++|.++.+|..+ .+|++|++++| .+..+|. ++++++|++|++++|.+.+ +|....+
T Consensus 147 p-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n-~l~~l~~--~~~l~~L~~L~l~~N~l~~-l~~~~~~L~ 218 (454)
T 1jl5_A 147 P-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNN-QLEELPE--LQNLPFLTAIYADNNSLKK-LPDLPLSLE 218 (454)
T ss_dssp C-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSS-CCSSCCC--CTTCTTCCEEECCSSCCSS-CCCCCTTCC
T ss_pred c-ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCC-cCCcCcc--ccCCCCCCEEECCCCcCCc-CCCCcCccc
Confidence 6 4666666666666666666665432 36666666666 4444553 5666666666666665543 2211100
Q ss_pred ---cccCCCcchhHhhccccCCceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeec
Q 037847 347 ---VLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELE 423 (542)
Q Consensus 347 ---~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~ 423 (542)
....... .+..+..+++|+.|+++.+.... .......++.+++.++.....+ ..+++|++|+++
T Consensus 219 ~L~l~~n~l~-~lp~~~~l~~L~~L~l~~N~l~~------l~~~~~~L~~L~l~~N~l~~l~------~~~~~L~~L~ls 285 (454)
T 1jl5_A 219 SIVAGNNILE-ELPELQNLPFLTTIYADNNLLKT------LPDLPPSLEALNVRDNYLTDLP------ELPQSLTFLDVS 285 (454)
T ss_dssp EEECCSSCCS-SCCCCTTCTTCCEEECCSSCCSS------CCSCCTTCCEEECCSSCCSCCC------CCCTTCCEEECC
T ss_pred EEECcCCcCC-cccccCCCCCCCEEECCCCcCCc------ccccccccCEEECCCCcccccC------cccCcCCEEECc
Confidence 0000011 11236677888888887664332 1223356677777665432111 113567777777
Q ss_pred ccCccceeec--cchh-------hcccccccccccCEEEEccCCCCCcchhhhccCcceEEEeccchhhhcccccccccc
Q 037847 424 SCNLEEMKID--STEE-------VKKLFRNGFRNLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDIS 494 (542)
Q Consensus 424 ~~~~~~~~~~--~~~~-------~~~~~~~~l~~L~~L~L~~c~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~ 494 (542)
+|.+..++.. .... ...++ ...++|+.|++++|.+..++. .+++|++|++++|.++.++
T Consensus 286 ~N~l~~l~~~~~~L~~L~l~~N~l~~i~-~~~~~L~~L~Ls~N~l~~lp~--~~~~L~~L~L~~N~l~~lp--------- 353 (454)
T 1jl5_A 286 ENIFSGLSELPPNLYYLNASSNEIRSLC-DLPPSLEELNVSNNKLIELPA--LPPRLERLIASFNHLAEVP--------- 353 (454)
T ss_dssp SSCCSEESCCCTTCCEEECCSSCCSEEC-CCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCC---------
T ss_pred CCccCcccCcCCcCCEEECcCCcCCccc-CCcCcCCEEECCCCccccccc--cCCcCCEEECCCCcccccc---------
Confidence 7766553210 0000 00000 012466677776666622222 2566777777776666542
Q ss_pred cccCCcCCCCCccceeecccCCccc--ccCCCCCCC-------------CCcceEeeccCC
Q 037847 495 EVIGSEHNFFPRLEYLTMWRGTNLK--SVYPNPQPF-------------PKLKKIQAFHCR 540 (542)
Q Consensus 495 ~~~~~~~~~~~~L~~L~l~~c~~l~--~~~~~~~~~-------------p~L~~L~i~~C~ 540 (542)
. .+++|++|++.++.--. .+|...+.+ ++|++|++++++
T Consensus 354 ----~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~ 407 (454)
T 1jl5_A 354 ----E---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP 407 (454)
T ss_dssp ----C---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC---------------------
T ss_pred ----c---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCc
Confidence 1 36778888887764222 344433333 677888877653
No 61
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.81 E-value=1.5e-19 Score=186.72 Aligned_cols=236 Identities=15% Similarity=0.091 Sum_probs=168.1
Q ss_pred CCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccCCCCCcccHHhhcCCCCCEEe
Q 037847 226 TCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLN 305 (542)
Q Consensus 226 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~ 305 (542)
.+++|++|++++|.+..+++..|..+++|++|++++| .+...++ ++.+++|++|++++|.++.+|. .++|++|+
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~ 105 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLH 105 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTS-CCEEEEE-CTTCTTCCEEECCSSEEEEEEE----CTTCCEEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCC-CCCCCcc-cccCCCCCEEEecCCcCCCCCC----CCCcCEEE
Confidence 4557888888888887777766888888888888888 4554443 7888888888888888777663 37888888
Q ss_pred ccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCCceeeeEecchHHHHHhhcCc
Q 037847 306 LDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYP 385 (542)
Q Consensus 306 l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~ 385 (542)
+++| .+..+|. ..+++|++|++++|.+.+..| ..++.+++|+.|+++.+...
T Consensus 106 L~~N-~l~~~~~---~~l~~L~~L~L~~N~l~~~~~---------------~~~~~l~~L~~L~Ls~N~l~--------- 157 (487)
T 3oja_A 106 AANN-NISRVSC---SRGQGKKNIYLANNKITMLRD---------------LDEGCRSRVQYLDLKLNEID--------- 157 (487)
T ss_dssp CCSS-CCCCEEE---CCCSSCEEEECCSSCCCSGGG---------------BCGGGGSSEEEEECTTSCCC---------
T ss_pred CcCC-cCCCCCc---cccCCCCEEECCCCCCCCCCc---------------hhhcCCCCCCEEECCCCCCC---------
Confidence 8888 4555554 246778888888887654322 12445666666666544311
Q ss_pred hhhccceeEEeccccCCCCCceeccc-ccccccceeeecccCccceeeccchhhcccccccccccCEEEEccCCC-CCcc
Q 037847 386 KLVSITQSVWVECGTYTRPPFNVLHL-AYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRG-KDLT 463 (542)
Q Consensus 386 ~~~~~l~~l~l~~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~-~~~~ 463 (542)
......+ ..+++|++|++++|.+..++.. ..+++|+.|+|++|.+ ..++
T Consensus 158 -------------------~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~----------~~l~~L~~L~Ls~N~l~~~~~ 208 (487)
T 3oja_A 158 -------------------TVNFAELAASSDTLEHLNLQYNFIYDVKGQ----------VVFAKLKTLDLSSNKLAFMGP 208 (487)
T ss_dssp -------------------EEEGGGGGGGTTTCCEEECTTSCCCEEECC----------CCCTTCCEEECCSSCCCEECG
T ss_pred -------------------CcChHHHhhhCCcccEEecCCCcccccccc----------ccCCCCCEEECCCCCCCCCCH
Confidence 0111223 2578999999999998875322 2389999999999999 6666
Q ss_pred hhhhccCcceEEEeccchhhhcccccccccccccCCcCCCCCccceeecccCCcc-cccCCCCCCCCCcceEeec
Q 037847 464 WLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNL-KSVYPNPQPFPKLKKIQAF 537 (542)
Q Consensus 464 ~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l-~~~~~~~~~~p~L~~L~i~ 537 (542)
.+..+++|+.|+|++|.+..++. ....+++|+.|++.+++-. ..++.....++.|+.+++.
T Consensus 209 ~~~~l~~L~~L~Ls~N~l~~lp~-------------~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 209 EFQSAAGVTWISLRNNKLVLIEK-------------ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp GGGGGTTCSEEECTTSCCCEECT-------------TCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred hHcCCCCccEEEecCCcCcccch-------------hhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 78899999999999999887643 5677899999999987643 2333344567777777664
No 62
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.81 E-value=3.1e-19 Score=171.46 Aligned_cols=216 Identities=24% Similarity=0.302 Sum_probs=172.0
Q ss_pred ecCcccccCCcccccccceEEEeecCCcCCCC--CCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcC
Q 037847 191 RAGVKLTEAPKVEEWEGAKRISLTANGIGSLS--EIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTL 268 (542)
Q Consensus 191 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l 268 (542)
..+..+..+|. ....++++|++.++.+..++ .+..+++|++|++++|.+..+.+..+..+++|++|++++|..+..+
T Consensus 18 c~~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~ 96 (285)
T 1ozn_A 18 CPQQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV 96 (285)
T ss_dssp CCSSCCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCC
T ss_pred cCcCCcccCCc-CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcccc
Confidence 34455566664 23468999999999999876 4889999999999999998887777999999999999999546666
Q ss_pred -ccccCCCCCCCEEeccCCCCCcc-cHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCc
Q 037847 269 -PSGISGLVSLHHLDLSSTDITGL-PQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGN 346 (542)
Q Consensus 269 -p~~i~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 346 (542)
|..+..+++|++|++++|.++.+ |..+.++++|++|++++| .+..+|...++.+++|++|++++|.+.+..+
T Consensus 97 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----- 170 (285)
T 1ozn_A 97 DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGNRISSVPE----- 170 (285)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCEECT-----
T ss_pred CHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCC-cccccCHhHhccCCCccEEECCCCcccccCH-----
Confidence 77899999999999999999986 567889999999999999 6677776668899999999999998753211
Q ss_pred cccCCCcchhHhhccccCCceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccC
Q 037847 347 VLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCN 426 (542)
Q Consensus 347 ~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 426 (542)
..+..+++|+.|+++.+... ......+..+++|++|++++|.
T Consensus 171 ----------~~~~~l~~L~~L~l~~n~l~----------------------------~~~~~~~~~l~~L~~L~l~~n~ 212 (285)
T 1ozn_A 171 ----------RAFRGLHSLDRLLLHQNRVA----------------------------HVHPHAFRDLGRLMTLYLFANN 212 (285)
T ss_dssp ----------TTTTTCTTCCEEECCSSCCC----------------------------EECTTTTTTCTTCCEEECCSSC
T ss_pred ----------HHhcCccccCEEECCCCccc----------------------------ccCHhHccCcccccEeeCCCCc
Confidence 23566788888888755311 1112345678899999999999
Q ss_pred ccceeeccchhhcccccccccccCEEEEccCCC
Q 037847 427 LEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRG 459 (542)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~ 459 (542)
+..++...+ ..+++|+.|++++|.+
T Consensus 213 l~~~~~~~~--------~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 213 LSALPTEAL--------APLRALQYLRLNDNPW 237 (285)
T ss_dssp CSCCCHHHH--------TTCTTCCEEECCSSCE
T ss_pred CCcCCHHHc--------ccCcccCEEeccCCCc
Confidence 987654433 3389999999999988
No 63
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.80 E-value=6.3e-19 Score=171.03 Aligned_cols=197 Identities=24% Similarity=0.371 Sum_probs=129.3
Q ss_pred ccccccceEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEE
Q 037847 202 VEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHL 281 (542)
Q Consensus 202 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L 281 (542)
...+.+++.|++.++.+..++.+..+++|++|++++|.+..+++ +..+++|++|++++| .+..+| .++.+.+|++|
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L 112 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGN-PLKNVS-AIAGLQSIKTL 112 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSC-CCSCCG-GGTTCTTCCEE
T ss_pred HHHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCC-cCCCch-hhcCCCCCCEE
Confidence 34456677777777777766666677777777777776666655 666777777777777 455555 56677777777
Q ss_pred eccCCCCCcccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhcc
Q 037847 282 DLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLG 361 (542)
Q Consensus 282 ~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 361 (542)
++++|.++.+|. +..+++|++|++++| .+..++. ++.+++|++|++++|.+...
T Consensus 113 ~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~~~---------------------- 166 (308)
T 1h6u_A 113 DLTSTQITDVTP-LAGLSNLQVLYLDLN-QITNISP--LAGLTNLQYLSIGNAQVSDL---------------------- 166 (308)
T ss_dssp ECTTSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG--GGGCTTCCEEECCSSCCCCC----------------------
T ss_pred ECCCCCCCCchh-hcCCCCCCEEECCCC-ccCcCcc--ccCCCCccEEEccCCcCCCC----------------------
Confidence 777777766654 667777777777776 4555554 56667777777766654210
Q ss_pred ccCCceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccchhhccc
Q 037847 362 LKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKL 441 (542)
Q Consensus 362 L~~L~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 441 (542)
..+..+++|++|++++|.+..++.
T Consensus 167 -----------------------------------------------~~l~~l~~L~~L~l~~n~l~~~~~--------- 190 (308)
T 1h6u_A 167 -----------------------------------------------TPLANLSKLTTLKADDNKISDISP--------- 190 (308)
T ss_dssp -----------------------------------------------GGGTTCTTCCEEECCSSCCCCCGG---------
T ss_pred -----------------------------------------------hhhcCCCCCCEEECCCCccCcChh---------
Confidence 113345677777777777665322
Q ss_pred ccccccccCEEEEccCCCCCcchhhhccCcceEEEeccchhhhc
Q 037847 442 FRNGFRNLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEII 485 (542)
Q Consensus 442 ~~~~l~~L~~L~L~~c~~~~~~~l~~l~~L~~L~L~~~~l~~~~ 485 (542)
...+++|+.|++++|.+...+.+..+++|++|++++|.++..+
T Consensus 191 -l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i~~~~ 233 (308)
T 1h6u_A 191 -LASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTITNQP 233 (308)
T ss_dssp -GGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEEECCC
T ss_pred -hcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCeeecCC
Confidence 1336778888888877744445777888888888887776543
No 64
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.79 E-value=1e-19 Score=187.95 Aligned_cols=237 Identities=21% Similarity=0.180 Sum_probs=184.5
Q ss_pred cccceEEEeecCCcCCCC--CCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEe
Q 037847 205 WEGAKRISLTANGIGSLS--EIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLD 282 (542)
Q Consensus 205 ~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~ 282 (542)
+++++.|++++|.+..++ .+..+++|++|++++|.+...++ +..+++|++|++++| .+..+|. .++|++|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~l~~l~~----~~~L~~L~ 105 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN-YVQELLV----GPSIETLH 105 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSS-EEEEEEE----CTTCCEEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCC-cCCCCCC----CCCcCEEE
Confidence 358999999999999875 58899999999999999987766 889999999999999 6666663 38999999
Q ss_pred ccCCCCCcccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhc-c
Q 037847 283 LSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELL-G 361 (542)
Q Consensus 283 l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~ 361 (542)
+++|.++.+|.. .+++|++|++++| .+..++...++.+++|++|++++|.+.+..| ..+. .
T Consensus 106 L~~N~l~~~~~~--~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---------------~~l~~~ 167 (487)
T 3oja_A 106 AANNNISRVSCS--RGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTVNF---------------AELAAS 167 (487)
T ss_dssp CCSSCCCCEEEC--CCSSCEEEECCSS-CCCSGGGBCGGGGSSEEEEECTTSCCCEEEG---------------GGGGGG
T ss_pred CcCCcCCCCCcc--ccCCCCEEECCCC-CCCCCCchhhcCCCCCCEEECCCCCCCCcCh---------------HHHhhh
Confidence 999999997753 5789999999999 5555544348889999999999998865332 2333 5
Q ss_pred ccCCceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccchhhccc
Q 037847 362 LKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKL 441 (542)
Q Consensus 362 L~~L~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 441 (542)
+++|+.|+++.+... .......+++|++|++++|.+..+++. +
T Consensus 168 l~~L~~L~Ls~N~l~------------------------------~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~------ 210 (487)
T 3oja_A 168 SDTLEHLNLQYNFIY------------------------------DVKGQVVFAKLKTLDLSSNKLAFMGPE-F------ 210 (487)
T ss_dssp TTTCCEEECTTSCCC------------------------------EEECCCCCTTCCEEECCSSCCCEECGG-G------
T ss_pred CCcccEEecCCCccc------------------------------cccccccCCCCCEEECCCCCCCCCCHh-H------
Confidence 778888888755421 011223478999999999999886543 2
Q ss_pred ccccccccCEEEEccCCC-CCcchhhhccCcceEEEeccchhhhcccccccccccccCCcCCCCCccceeecccCC
Q 037847 442 FRNGFRNLNTVVLRSCRG-KDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGT 516 (542)
Q Consensus 442 ~~~~l~~L~~L~L~~c~~-~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 516 (542)
..+++|+.|++++|.+ ..++.+..+++|+.|++++|.+..... +.....+++|+.|.+..+.
T Consensus 211 --~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~-----------~~~~~~l~~L~~l~~~~~~ 273 (487)
T 3oja_A 211 --QSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTL-----------RDFFSKNQRVQTVAKQTVK 273 (487)
T ss_dssp --GGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHH-----------HHHHTTCHHHHHHHHHHHH
T ss_pred --cCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcch-----------HHHHHhCCCCcEEeccccc
Confidence 3489999999999999 656667889999999999988772211 1245668888888876433
No 65
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.79 E-value=3.7e-19 Score=205.67 Aligned_cols=166 Identities=18% Similarity=0.310 Sum_probs=140.3
Q ss_pred CCeeecCC-CChhhHHHHHHHHhccccCCCCCCHHHHHHHHHHHhCCChhHHHHHHHHHhcCCChhHHHHHHHHHhcccC
Q 037847 3 AEKLEVYS-LAHDKAWELFQEMVERSTLDSHTSIPELAETLARECGGLPLALKIVGRAMKSQRKVGDWKRAINKMRTSAS 81 (542)
Q Consensus 3 ~~~~~l~~-L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~kc~GlPlai~~ig~~L~~~~~~~~W~~~~~~l~~~~~ 81 (542)
..+|++.+ |+++|||+||++.++.. .+++.+++++|+++|+|+||||+++|+.|+.+. ..|+..++.+....+
T Consensus 277 ~~~~~~~~~l~~~~a~~l~~~~~~~~----~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~~~~ 350 (1249)
T 3sfz_A 277 KHVVPVESGLGREKGLEILSLFVNMK----KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQNKQF 350 (1249)
T ss_dssp BCCEECCSSCCHHHHHHHHHHHHTSC----STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHSCCC
T ss_pred ceEEEecCCCCHHHHHHHHHHhhCCC----hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHhhhhh
Confidence 36788996 99999999999998543 345567899999999999999999999999843 579999999977654
Q ss_pred CC-----CCChHHHHHHHHhhcCCCCchhhhHHHhhhccCCCCcccChHHHHHHHHHcCCccccchhchHHHHHHHhccc
Q 037847 82 KF-----SGMKEEVFSRLKFSYDSLSTDELRSCLLYCYLYPEDYEIPKRELIDYWISEGFVYDFDDGCDFIDDLLQACLL 156 (542)
Q Consensus 82 ~~-----~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~~~~~~Li~~w~a~g~i~~~~~~~~~~~~L~~~~l~ 156 (542)
.. ......+..++.+||+.||+ +.|.||+|||+||+++.|+++.++.+|.+++ +.++.++++|++++|+
T Consensus 351 ~~~~~~~~~~~~~~~~~l~~s~~~L~~-~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~-----~~~~~~l~~L~~~sl~ 424 (1249)
T 3sfz_A 351 KRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCVLWDLET-----EEVEDILQEFVNKSLL 424 (1249)
T ss_dssp CCSSCTTCTTHHHHHHHHHHHHHTSCT-TTHHHHHHGGGSCTTCCEEHHHHHHHHTCCH-----HHHHHHHHHHHHTTSC
T ss_pred hhcccccccchHHHHHHHHHHHHhCCH-HHHHHHHHhCccCCCCeeCHHHHHHHhCCCH-----HHHHHHHHHHHhccce
Confidence 31 11224799999999999999 8999999999999999999999999997764 6789999999999999
Q ss_pred cccCC---CeEEeehHHHHHHHHHHcc
Q 037847 157 EEEGD---DHVKMHDMIREMSLWIACT 180 (542)
Q Consensus 157 ~~~~~---~~~~mhdl~~~~~~~i~~~ 180 (542)
+.... ..|+|||++|++++..+..
T Consensus 425 ~~~~~~~~~~~~~h~l~~~~~~~~~~~ 451 (1249)
T 3sfz_A 425 FCNRNGKSFCYYLHDLQVDFLTEKNRS 451 (1249)
T ss_dssp EEEESSSSEEEECCHHHHHHHHHHTGG
T ss_pred EEecCCCceEEEecHHHHHHHHhhhhH
Confidence 98533 3599999999999887553
No 66
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.78 E-value=1.7e-18 Score=168.04 Aligned_cols=198 Identities=19% Similarity=0.248 Sum_probs=147.8
Q ss_pred cCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccCCCCCcccHHhhc
Q 037847 218 IGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKA 297 (542)
Q Consensus 218 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~ 297 (542)
+..+....++++|+.|+++++.+..++. +..+++|++|++++| .+..++. ++.+++|++|++++|.++.+| .+..
T Consensus 31 ~~~~~~~~~l~~L~~L~l~~~~i~~l~~--~~~l~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~ 105 (308)
T 1h6u_A 31 VTDTVTQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGNPLKNVS-AIAG 105 (308)
T ss_dssp TTSEECHHHHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTT
T ss_pred cCceecHHHcCCcCEEEeeCCCccCchh--hhccCCCCEEEccCC-cCCCChh-HccCCCCCEEEccCCcCCCch-hhcC
Confidence 3333334456778888888887776653 677888888888888 6666665 778888888888888777775 5777
Q ss_pred CCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCCceeeeEecchHH
Q 037847 298 LEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLA 377 (542)
Q Consensus 298 l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~ 377 (542)
+++|++|++++| .+..+|. +..+++|++|++++|.+.+.
T Consensus 106 l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~~~-------------------------------------- 144 (308)
T 1h6u_A 106 LQSIKTLDLTST-QITDVTP--LAGLSNLQVLYLDLNQITNI-------------------------------------- 144 (308)
T ss_dssp CTTCCEEECTTS-CCCCCGG--GTTCTTCCEEECCSSCCCCC--------------------------------------
T ss_pred CCCCCEEECCCC-CCCCchh--hcCCCCCCEEECCCCccCcC--------------------------------------
Confidence 888888888887 5566665 67778888888877754310
Q ss_pred HHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccchhhcccccccccccCEEEEccC
Q 037847 378 VQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSC 457 (542)
Q Consensus 378 ~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c 457 (542)
..+..+++|++|++++|.+..++. ...+++|+.|++++|
T Consensus 145 -------------------------------~~l~~l~~L~~L~l~~n~l~~~~~----------l~~l~~L~~L~l~~n 183 (308)
T 1h6u_A 145 -------------------------------SPLAGLTNLQYLSIGNAQVSDLTP----------LANLSKLTTLKADDN 183 (308)
T ss_dssp -------------------------------GGGGGCTTCCEEECCSSCCCCCGG----------GTTCTTCCEEECCSS
T ss_pred -------------------------------ccccCCCCccEEEccCCcCCCChh----------hcCCCCCCEEECCCC
Confidence 113456789999999998876432 244899999999999
Q ss_pred CCCCcchhhhccCcceEEEeccchhhhcccccccccccccCCcCCCCCccceeecccCC
Q 037847 458 RGKDLTWLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGT 516 (542)
Q Consensus 458 ~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 516 (542)
.+..++.+..+++|++|+|++|.+++++ ....+++|+.|++.+++
T Consensus 184 ~l~~~~~l~~l~~L~~L~L~~N~l~~~~--------------~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 184 KISDISPLASLPNLIEVHLKNNQISDVS--------------PLANTSNLFIVTLTNQT 228 (308)
T ss_dssp CCCCCGGGGGCTTCCEEECTTSCCCBCG--------------GGTTCTTCCEEEEEEEE
T ss_pred ccCcChhhcCCCCCCEEEccCCccCccc--------------cccCCCCCCEEEccCCe
Confidence 9955666899999999999999988764 34568999999998864
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.78 E-value=5.8e-20 Score=178.86 Aligned_cols=128 Identities=16% Similarity=0.135 Sum_probs=97.8
Q ss_pred ccceEEEeecCCcCCCCC-CCCCCCccEEEccCcccccc-cchhhc-------cCCCccEEEecCCCCCCcCcccc--CC
Q 037847 206 EGAKRISLTANGIGSLSE-IPTCPRLVTLLLDGNRIEEI-TDGFFQ-------SLSTLRVLSLRGNFPPSTLPSGI--SG 274 (542)
Q Consensus 206 ~~l~~l~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~-~~~~~~-------~l~~L~~L~l~~~~~~~~lp~~i--~~ 274 (542)
.+++.+++.++.+ .+|. +.. .|+.|++++|.+... .+..+. .+++|++|++++|.....+|..+ +.
T Consensus 43 ~~L~~l~l~~n~l-~~p~~~~~--~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 119 (312)
T 1wwl_A 43 RSLEYLLKRVDTE-ADLGQFTD--IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEAT 119 (312)
T ss_dssp EECTTHHHHCCTT-CCCHHHHH--HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCC
T ss_pred CCceeEeeccccc-ccHHHHHH--HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhc
Confidence 4566667777777 5543 222 288889998877432 222233 68999999999995555788876 89
Q ss_pred CCCCCEEeccCCCCCcccHHhhcC-----CCCCEEeccCCcccCccchhhcCCCCCCcEEeccCcccc
Q 037847 275 LVSLHHLDLSSTDITGLPQELKAL-----EKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRF 337 (542)
Q Consensus 275 l~~L~~L~l~~~~i~~lp~~i~~l-----~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~ 337 (542)
+++|++|++++|.++.+|..++.+ ++|++|++++| .+..++...++++++|++|++++|.+.
T Consensus 120 l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 186 (312)
T 1wwl_A 120 GPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA-HSLNFSCEQVRVFPALSTLDLSDNPEL 186 (312)
T ss_dssp SCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESC-SCCCCCTTTCCCCSSCCEEECCSCTTC
T ss_pred CCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCC-CCccchHHHhccCCCCCEEECCCCCcC
Confidence 999999999999999888888877 89999999999 566666445899999999999998764
No 68
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.77 E-value=5.1e-18 Score=162.98 Aligned_cols=133 Identities=20% Similarity=0.206 Sum_probs=113.7
Q ss_pred ccccccceEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEE
Q 037847 202 VEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHL 281 (542)
Q Consensus 202 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L 281 (542)
+..+.+++.+++.++.+..+|... .++++.|++++|.+..+++..+..+++|++|++++| .+..+|.. +.+++|++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~-~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~~L 82 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLGTL 82 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCC-CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCCEE
T ss_pred ccccCCccEEECCCCCCCcCCCCC-CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCCEE
Confidence 344567889999999998887422 378999999999998888777999999999999999 67777754 889999999
Q ss_pred eccCCCCCcccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccc
Q 037847 282 DLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFG 338 (542)
Q Consensus 282 ~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~ 338 (542)
++++|.++.+|..+..+++|++|++++| .+..+|.+.+..+++|++|++++|.+.+
T Consensus 83 ~Ls~N~l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~~ 138 (290)
T 1p9a_G 83 DLSHNQLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNELKT 138 (290)
T ss_dssp ECCSSCCSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTSCCCC
T ss_pred ECCCCcCCcCchhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCCCCCc
Confidence 9999999999999999999999999999 6777776668999999999999988753
No 69
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.76 E-value=2e-17 Score=174.39 Aligned_cols=237 Identities=20% Similarity=0.162 Sum_probs=175.7
Q ss_pred ceEEEecCcccccCCcccccccceEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCC
Q 037847 186 QNFLVRAGVKLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPP 265 (542)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 265 (542)
-..+...++.+..+|. .+.+++.|++++|.+..+|. .+++|++|++++|.++.++. .+++|++|++++| .+
T Consensus 63 L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~l~~----~l~~L~~L~L~~N-~l 133 (622)
T 3g06_A 63 ITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLTHLPA----LPSGLCKLWIFGN-QL 133 (622)
T ss_dssp CSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSCCCCCCCC----CCTTCCEEECCSS-CC
T ss_pred CcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcCCCCCC----CCCCcCEEECCCC-CC
Confidence 3455666677777776 56899999999999999887 88999999999999988766 5689999999999 68
Q ss_pred CcCccccCCCCCCCEEeccCCCCCcccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCC
Q 037847 266 STLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEG 345 (542)
Q Consensus 266 ~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 345 (542)
..+|.. +++|++|++++|.++.+|. .+.+|+.|++++| .+..+| ..+++|+.|++++|.+.+ +|.
T Consensus 134 ~~lp~~---l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N-~l~~l~----~~~~~L~~L~Ls~N~l~~-l~~--- 198 (622)
T 3g06_A 134 TSLPVL---PPGLQELSVSDNQLASLPA---LPSELCKLWAYNN-QLTSLP----MLPSGLQELSVSDNQLAS-LPT--- 198 (622)
T ss_dssp SCCCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSS-CCSCCC----CCCTTCCEEECCSSCCSC-CCC---
T ss_pred CcCCCC---CCCCCEEECcCCcCCCcCC---ccCCCCEEECCCC-CCCCCc----ccCCCCcEEECCCCCCCC-CCC---
Confidence 888864 4899999999999999886 3578999999999 677788 346899999999998753 211
Q ss_pred ccccCCCcchhHhhccccCCceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeeccc
Q 037847 346 NVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESC 425 (542)
Q Consensus 346 ~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 425 (542)
.+.+|+.|+++.+... ........++.|++.++..+..+ ..+++|++|++++|
T Consensus 199 ---------------~~~~L~~L~L~~N~l~------~l~~~~~~L~~L~Ls~N~L~~lp------~~l~~L~~L~Ls~N 251 (622)
T 3g06_A 199 ---------------LPSELYKLWAYNNRLT------SLPALPSGLKELIVSGNRLTSLP------VLPSELKELMVSGN 251 (622)
T ss_dssp ---------------CCTTCCEEECCSSCCS------SCCCCCTTCCEEECCSSCCSCCC------CCCTTCCEEECCSS
T ss_pred ---------------ccchhhEEECcCCccc------ccCCCCCCCCEEEccCCccCcCC------CCCCcCcEEECCCC
Confidence 1356777777655432 12222355667777655432111 34577888888888
Q ss_pred CccceeeccchhhcccccccccccCEEEEccCCC-CCcchhhhccCcceEEEeccchhhhc
Q 037847 426 NLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRG-KDLTWLVFVQNLKQLNMQGFTMEEII 485 (542)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~-~~~~~l~~l~~L~~L~L~~~~l~~~~ 485 (542)
.+..++. .+++|+.|+|++|.+ ..++.+..+++|+.|+|++|.+....
T Consensus 252 ~L~~lp~------------~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~~~ 300 (622)
T 3g06_A 252 RLTSLPM------------LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERT 300 (622)
T ss_dssp CCSCCCC------------CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCCHHH
T ss_pred CCCcCCc------------ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCCCcC
Confidence 7766432 267788888888877 55566778888888888887776543
No 70
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.76 E-value=1.8e-17 Score=157.68 Aligned_cols=128 Identities=23% Similarity=0.340 Sum_probs=98.4
Q ss_pred cceEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccc-cCCCCCCCEEeccC
Q 037847 207 GAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSG-ISGLVSLHHLDLSS 285 (542)
Q Consensus 207 ~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~-i~~l~~L~~L~l~~ 285 (542)
..+.+++.++.+..+|... .++++.|++++|.+..+++..|..+++|++|++++| .+..+|.. +..+++|++|++++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNI-PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEEccCCCCCccCCCC-CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECCC
Confidence 4567888888888777522 267888888888888887766888888888888888 56666654 47788888888888
Q ss_pred CCCCcccHH-hhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCcccc
Q 037847 286 TDITGLPQE-LKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRF 337 (542)
Q Consensus 286 ~~i~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~ 337 (542)
|.++.+|.. +..+++|++|++++| .+..+|...++.+++|++|++++|.+.
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 146 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGYNELQ 146 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CcCCcCCHhHcccccCCCEEECCCC-ccCeeCHHHhCcCcCCCEEECCCCcCC
Confidence 888887654 577888888888888 566666655788888888888887654
No 71
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.75 E-value=1.8e-17 Score=158.36 Aligned_cols=55 Identities=9% Similarity=0.039 Sum_probs=33.0
Q ss_pred eeeecccCccceeeccchhhcccccccccccCEEEEccCCC-CCcch-hhhccCcceEEEeccchh
Q 037847 419 ELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRG-KDLTW-LVFVQNLKQLNMQGFTME 482 (542)
Q Consensus 419 ~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~-~~~~~-l~~l~~L~~L~L~~~~l~ 482 (542)
+|++++|.+..++...+. ..+|+.|++++|.+ ..++. +..+++|++|+|++|.+.
T Consensus 181 ~L~ls~n~l~~~~~~~~~---------~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 181 SLDLSLNPMNFIQPGAFK---------EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp EEECCSSCCCEECTTSSC---------SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred eeecCCCcccccCccccC---------CCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 566677766654433221 23677777777777 33332 466777777777776654
No 72
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.75 E-value=2e-18 Score=184.42 Aligned_cols=142 Identities=15% Similarity=0.258 Sum_probs=120.1
Q ss_pred eeecC------CCChhhHHHHHHHHhccccCCCCCCHHHHHHHHHHHhCCChhHHHHHHHHHhcC-CChhHHHHHHHHHh
Q 037847 5 KLEVY------SLAHDKAWELFQEMVERSTLDSHTSIPELAETLARECGGLPLALKIVGRAMKSQ-RKVGDWKRAINKMR 77 (542)
Q Consensus 5 ~~~l~------~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~kc~GlPlai~~ig~~L~~~-~~~~~W~~~~~~l~ 77 (542)
+|+|+ +|+++|||+||+++.... ..++..+| |+|+||||+++|+.|+.+ .+.++|+..
T Consensus 286 vy~LeL~d~dL~LS~eEA~eLF~~~~g~~-------~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~----- 350 (1221)
T 1vt4_I 286 TTHISLDHHSMTLTPDEVKSLLLKYLDCR-------PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV----- 350 (1221)
T ss_dssp SCEEEECSSSSCCCHHHHHHHHHHHHCCC-------TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC-----
T ss_pred EEEecCccccCCcCHHHHHHHHHHHcCCC-------HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC-----
Confidence 67788 999999999999984221 23444444 999999999999999986 367889752
Q ss_pred cccCCCCCChHHHHHHHHhhcCCCCchhh-hHHHhhhccCCCCcccChHHHHHHHHHcCCccccchhchHHHHHHHhccc
Q 037847 78 TSASKFSGMKEEVFSRLKFSYDSLSTDEL-RSCLLYCYLYPEDYEIPKRELIDYWISEGFVYDFDDGCDFIDDLLQACLL 156 (542)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~sy~~L~~~~~-k~cfl~~~~fp~~~~~~~~~Li~~w~a~g~i~~~~~~~~~~~~L~~~~l~ 156 (542)
....+..+|++||+.||+ +. |.||+|||+||+++.|+++.++.+|+++|. +.+..++++|+++||+
T Consensus 351 --------~~~~I~aaLelSYd~Lp~-eelK~cFL~LAIFPed~~I~~elLa~LW~aeGe----edAe~~L~eLvdRSLL 417 (1221)
T 1vt4_I 351 --------NCDKLTTIIESSLNVLEP-AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK----SDVMVVVNKLHKYSLV 417 (1221)
T ss_dssp --------SCHHHHHHHHHHHHHSCT-THHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCS----HHHHHHHHHHHTSSSS
T ss_pred --------ChhHHHHHHHHHHHhCCH-HHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCH----HHHHHHHHHHHhhCCE
Confidence 124899999999999999 78 999999999999999999999999999871 4688999999999999
Q ss_pred ccc-CCCeEEeehHHHHHH
Q 037847 157 EEE-GDDHVKMHDMIREMS 174 (542)
Q Consensus 157 ~~~-~~~~~~mhdl~~~~~ 174 (542)
+.. ....|+|||++++++
T Consensus 418 q~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 418 EKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp SBCSSSSEEBCCCHHHHHH
T ss_pred EEeCCCCEEEehHHHHHHh
Confidence 985 467899999999865
No 73
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.75 E-value=2.2e-18 Score=164.21 Aligned_cols=200 Identities=22% Similarity=0.284 Sum_probs=130.6
Q ss_pred cccccccceEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCcc-ccCCCCCCC
Q 037847 201 KVEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPS-GISGLVSLH 279 (542)
Q Consensus 201 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~-~i~~l~~L~ 279 (542)
....+.+++.+++.++.+..++.+..+++|++|++++|.+...+ .+..+++|++|++++| .+..+|. .++.+.+|+
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 36 TQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp CHHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCC
T ss_pred ccccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch--hhcCCCCCCEEECCCC-ccCccChhHhcCCcCCC
Confidence 34455667777777777777666777777777777777666543 2667777777777777 4444443 356677777
Q ss_pred EEeccCCCCCcccHH-hhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHh
Q 037847 280 HLDLSSTDITGLPQE-LKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKE 358 (542)
Q Consensus 280 ~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (542)
+|++++|.++.+|.. ++.+++|++|++++| .+..+|...++.+++|++|++++|.+.+..
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~------------------ 173 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQLQSLP------------------ 173 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCC------------------
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCCcCccC------------------
Confidence 777777777765544 566777777777777 455555554566777777777766543110
Q ss_pred hccccCCceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccchhh
Q 037847 359 LLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEV 438 (542)
Q Consensus 359 l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 438 (542)
...+..+++|++|++++|.+..++...+
T Consensus 174 -------------------------------------------------~~~~~~l~~L~~L~L~~N~l~~~~~~~~--- 201 (272)
T 3rfs_A 174 -------------------------------------------------EGVFDKLTQLKDLRLYQNQLKSVPDGVF--- 201 (272)
T ss_dssp -------------------------------------------------TTTTTTCTTCCEEECCSSCCSCCCTTTT---
T ss_pred -------------------------------------------------HHHhcCCccCCEEECCCCcCCccCHHHH---
Confidence 1123456788888998888877554433
Q ss_pred cccccccccccCEEEEccCCCCCcchhhhccCcceEEEeccchhhh
Q 037847 439 KKLFRNGFRNLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEI 484 (542)
Q Consensus 439 ~~~~~~~l~~L~~L~L~~c~~~~~~~l~~l~~L~~L~L~~~~l~~~ 484 (542)
..+++|+.|++++|... +.+|+|++|+++.|.+...
T Consensus 202 -----~~l~~L~~L~l~~N~~~-----~~~~~l~~l~~~~n~~~g~ 237 (272)
T 3rfs_A 202 -----DRLTSLQYIWLHDNPWD-----CTCPGIRYLSEWINKHSGV 237 (272)
T ss_dssp -----TTCTTCCEEECCSSCBC-----CCTTTTHHHHHHHHHTGGG
T ss_pred -----hCCcCCCEEEccCCCcc-----ccCcHHHHHHHHHHhCCCc
Confidence 33788888888888651 2356777777777666544
No 74
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.75 E-value=6.3e-18 Score=157.81 Aligned_cols=112 Identities=19% Similarity=0.309 Sum_probs=69.1
Q ss_pred cCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCcc-ccCCCCCCCEEeccC-CCCCcccH-H
Q 037847 218 IGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPS-GISGLVSLHHLDLSS-TDITGLPQ-E 294 (542)
Q Consensus 218 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~-~i~~l~~L~~L~l~~-~~i~~lp~-~ 294 (542)
+..+|. -.++++.|++++|.++.+++..|..+++|++|++++|..+..+|. .++.+++|++|++++ |.++.+|. .
T Consensus 23 l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~ 100 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA 100 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTS
T ss_pred ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHH
Confidence 455555 233677777777777666665566777777777777732555543 456666777777766 66666553 3
Q ss_pred hhcCCCCCEEeccCCcccCccchhhcCCCCCCc---EEeccCc
Q 037847 295 LKALEKLRYLNLDYAFHLSIIPHQLISCFSKLE---VLRLCGC 334 (542)
Q Consensus 295 i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~---~L~l~~~ 334 (542)
+..+++|++|++++| .+..+|. ++.+++|+ +|++++|
T Consensus 101 f~~l~~L~~L~l~~n-~l~~lp~--~~~l~~L~~L~~L~l~~N 140 (239)
T 2xwt_C 101 LKELPLLKFLGIFNT-GLKMFPD--LTKVYSTDIFFILEITDN 140 (239)
T ss_dssp EECCTTCCEEEEEEE-CCCSCCC--CTTCCBCCSEEEEEEESC
T ss_pred hCCCCCCCEEeCCCC-CCccccc--cccccccccccEEECCCC
Confidence 556666666666666 4445554 55555555 6666555
No 75
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.74 E-value=1.2e-17 Score=159.10 Aligned_cols=219 Identities=18% Similarity=0.248 Sum_probs=158.1
Q ss_pred EEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccCCCCC
Q 037847 210 RISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDIT 289 (542)
Q Consensus 210 ~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~i~ 289 (542)
.+.+..+.+........+++|+.|++.++.+...+. +..+++|++|++++| .+..++ .++.+++|++|++++|.++
T Consensus 23 ~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~--l~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~L~~n~l~ 98 (272)
T 3rfs_A 23 KANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVRYLALGGN-KLHDIS-ALKELTNLTYLILTGNQLQ 98 (272)
T ss_dssp HHHHTCSCTTSEECHHHHTTCCEEECTTSCCCCCTT--GGGCTTCCEEECTTS-CCCCCG-GGTTCTTCCEEECTTSCCC
T ss_pred HHHhcCcccccccccccccceeeeeeCCCCcccccc--cccCCCCcEEECCCC-CCCCch-hhcCCCCCCEEECCCCccC
Confidence 344444555555556677889999999998876654 788999999999999 566665 7889999999999999998
Q ss_pred cccHH-hhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCCcee
Q 037847 290 GLPQE-LKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVL 368 (542)
Q Consensus 290 ~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l 368 (542)
.+|.. ++.+++|++|++++| .+..+|...++.+++|++|++++|.+.+..+
T Consensus 99 ~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--------------------------- 150 (272)
T 3rfs_A 99 SLPNGVFDKLTNLKELVLVEN-QLQSLPDGVFDKLTNLTYLNLAHNQLQSLPK--------------------------- 150 (272)
T ss_dssp CCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCT---------------------------
T ss_pred ccChhHhcCCcCCCEEECCCC-cCCccCHHHhccCCCCCEEECCCCccCccCH---------------------------
Confidence 87655 688999999999998 5666776657889999999998886542110
Q ss_pred eeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccchhhcccccccccc
Q 037847 369 SWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRN 448 (542)
Q Consensus 369 ~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 448 (542)
..+..+++|++|++++|.+..++...+ ..+++
T Consensus 151 ----------------------------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~--------~~l~~ 182 (272)
T 3rfs_A 151 ----------------------------------------GVFDKLTNLTELDLSYNQLQSLPEGVF--------DKLTQ 182 (272)
T ss_dssp ----------------------------------------TTTTTCTTCCEEECCSSCCCCCCTTTT--------TTCTT
T ss_pred ----------------------------------------HHhccCccCCEEECCCCCcCccCHHHh--------cCCcc
Confidence 123346788889999988877554433 33789
Q ss_pred cCEEEEccCCC-CCcc-hhhhccCcceEEEeccchhhhcccccccccccccCCcCCCCCccceeecccCCcccccCCCCC
Q 037847 449 LNTVVLRSCRG-KDLT-WLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLKSVYPNPQ 526 (542)
Q Consensus 449 L~~L~L~~c~~-~~~~-~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~ 526 (542)
|+.|++++|.+ ..++ .+..+++|++|+|++|.+. +.+|+|+.|.+..+.--..+|...+
T Consensus 183 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------------------~~~~~l~~l~~~~n~~~g~ip~~~~ 243 (272)
T 3rfs_A 183 LKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------------------CTCPGIRYLSEWINKHSGVVRNSAG 243 (272)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC-------------------CCTTTTHHHHHHHHHTGGGBBCTTS
T ss_pred CCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc-------------------ccCcHHHHHHHHHHhCCCcccCccc
Confidence 99999999988 3333 3678999999999988643 2366677776665443334444443
Q ss_pred C
Q 037847 527 P 527 (542)
Q Consensus 527 ~ 527 (542)
.
T Consensus 244 ~ 244 (272)
T 3rfs_A 244 S 244 (272)
T ss_dssp C
T ss_pred c
Confidence 3
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.74 E-value=4.1e-17 Score=155.20 Aligned_cols=198 Identities=20% Similarity=0.236 Sum_probs=146.1
Q ss_pred CccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCcc-ccCCCCCCCEEeccCCCCCcccHHh-hcCCCCCEEec
Q 037847 229 RLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPS-GISGLVSLHHLDLSSTDITGLPQEL-KALEKLRYLNL 306 (542)
Q Consensus 229 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~-~i~~l~~L~~L~l~~~~i~~lp~~i-~~l~~L~~L~l 306 (542)
..++++++++.++.+|... .+++++|++++| .+..+|. .++.+.+|++|++++|.++.+|..+ ..+++|++|++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~---~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNI---PADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTSCCSSCCSCC---CTTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCCCCCccCCCC---CCCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 4688999999998877652 268999999999 5666654 7899999999999999999988765 78999999999
Q ss_pred cCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCCceeeeEecchHHHHHhhcCch
Q 037847 307 DYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPK 386 (542)
Q Consensus 307 ~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~ 386 (542)
++| .+..+|...+..+++|++|++++|.+.+..+ ..+..+++|+.|+++.+...
T Consensus 93 ~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---------------~~~~~l~~L~~L~Ls~n~l~---------- 146 (270)
T 2o6q_A 93 TDN-KLQALPIGVFDQLVNLAELRLDRNQLKSLPP---------------RVFDSLTKLTYLSLGYNELQ---------- 146 (270)
T ss_dssp CSS-CCCCCCTTTTTTCSSCCEEECCSSCCCCCCT---------------TTTTTCTTCCEEECCSSCCC----------
T ss_pred CCC-cCCcCCHhHcccccCCCEEECCCCccCeeCH---------------HHhCcCcCCCEEECCCCcCC----------
Confidence 999 6777877668899999999999998754221 22456677777777644311
Q ss_pred hhccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccchhhcccccccccccCEEEEccCCC-CCcc-h
Q 037847 387 LVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRG-KDLT-W 464 (542)
Q Consensus 387 ~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~-~~~~-~ 464 (542)
......+..+++|++|++++|.+..++...+ ..+++|+.|++++|.+ ..++ .
T Consensus 147 ------------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--------~~l~~L~~L~L~~N~l~~~~~~~ 200 (270)
T 2o6q_A 147 ------------------SLPKGVFDKLTSLKELRLYNNQLKRVPEGAF--------DKLTELKTLKLDNNQLKRVPEGA 200 (270)
T ss_dssp ------------------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTT--------TTCTTCCEEECCSSCCSCCCTTT
T ss_pred ------------------ccCHhHccCCcccceeEecCCcCcEeChhHh--------ccCCCcCEEECCCCcCCcCCHHH
Confidence 1111234567788888888887776554333 2367888888888877 3333 3
Q ss_pred hhhccCcceEEEeccchh
Q 037847 465 LVFVQNLKQLNMQGFTME 482 (542)
Q Consensus 465 l~~l~~L~~L~L~~~~l~ 482 (542)
+..+++|+.|+|++|.+.
T Consensus 201 ~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 201 FDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TTTCTTCCEEECCSSCBC
T ss_pred hccccCCCEEEecCCCee
Confidence 667888888888887654
No 77
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.74 E-value=1.1e-16 Score=171.44 Aligned_cols=125 Identities=18% Similarity=0.111 Sum_probs=106.5
Q ss_pred EEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCcc-ccCCCCCCCEEeccCCCCC
Q 037847 211 ISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPS-GISGLVSLHHLDLSSTDIT 289 (542)
Q Consensus 211 l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~-~i~~l~~L~~L~l~~~~i~ 289 (542)
.+-.+.++..+|.-- -+++++|++++|.++.+++..|.++++|++|+|++| .+..+|+ .|+++++|++|+|++|.++
T Consensus 36 ~~c~~~~l~~vP~~l-p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N~l~ 113 (635)
T 4g8a_A 36 YQCMELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQ 113 (635)
T ss_dssp EECTTSCCSSCCSSS-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred EECCCCCcCccCCCC-CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCCcCC
Confidence 444455667776411 257999999999999999888999999999999999 6777754 6899999999999999999
Q ss_pred cccHH-hhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccc
Q 037847 290 GLPQE-LKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFG 338 (542)
Q Consensus 290 ~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~ 338 (542)
.+|.. +.++++|++|++++| .+..+|...++++++|++|++++|.+.+
T Consensus 114 ~l~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~~~~L~~L~~L~Ls~N~l~~ 162 (635)
T 4g8a_A 114 SLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQS 162 (635)
T ss_dssp EECGGGGTTCTTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSCCCC
T ss_pred CCCHHHhcCCCCCCEEECCCC-cCCCCChhhhhcCcccCeeccccCcccc
Confidence 98864 799999999999999 6778887668999999999999998764
No 78
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.73 E-value=5.2e-17 Score=155.07 Aligned_cols=214 Identities=25% Similarity=0.283 Sum_probs=156.7
Q ss_pred CcccccCCcccccccceEEEeecCCcCCCC--CCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcC-c
Q 037847 193 GVKLTEAPKVEEWEGAKRISLTANGIGSLS--EIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTL-P 269 (542)
Q Consensus 193 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l-p 269 (542)
+.....+|... ..+++.|++.++.+..++ .+.++++|++|++++|.+..+++..+..+++|++|++++| .+..+ |
T Consensus 16 ~~~l~~ip~~l-~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~ 93 (276)
T 2z62_A 16 ELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLAL 93 (276)
T ss_dssp TSCCSSCCSSS-CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECT
T ss_pred CCCccccCCCC-CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC-ccCccCh
Confidence 34445555422 257899999999998775 5788999999999999998888877899999999999999 45544 4
Q ss_pred cccCCCCCCCEEeccCCCCCcccH-HhhcCCCCCEEeccCCcccCc--cchhhcCCCCCCcEEeccCccccccccCCCCc
Q 037847 270 SGISGLVSLHHLDLSSTDITGLPQ-ELKALEKLRYLNLDYAFHLSI--IPHQLISCFSKLEVLRLCGCGRFGVIKGKEGN 346 (542)
Q Consensus 270 ~~i~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~~~~--lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 346 (542)
..++.+.+|++|++++|.+..++. .++.+++|++|++++| .+.. +|.. ++.+++|++|++++|.+.+..
T Consensus 94 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~~~------ 165 (276)
T 2z62_A 94 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIY------ 165 (276)
T ss_dssp TTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGG-GGGCTTCCEEECCSSCCCEEC------
T ss_pred hhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCC-ccceecCchh-hccCCCCCEEECCCCCCCcCC------
Confidence 678899999999999999888765 6889999999999998 4444 5665 888999999999999876421
Q ss_pred cccCCCcchhHhhccccCCc-eeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeeccc
Q 037847 347 VLCDGAEPLMKELLGLKHLN-VLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESC 425 (542)
Q Consensus 347 ~~~~~~~~~~~~l~~L~~L~-~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 425 (542)
...+..+.+++.|. .++++.+... .. ........+|++|++++|
T Consensus 166 ------~~~~~~l~~L~~l~l~L~ls~n~l~----------------------------~~-~~~~~~~~~L~~L~L~~n 210 (276)
T 2z62_A 166 ------CTDLRVLHQMPLLNLSLDLSLNPMN----------------------------FI-QPGAFKEIRLKELALDTN 210 (276)
T ss_dssp ------GGGGHHHHTCTTCCEEEECCSSCCC----------------------------EE-CTTSSCSCCEEEEECCSS
T ss_pred ------HHHhhhhhhccccceeeecCCCccc----------------------------cc-CccccCCCcccEEECCCC
Confidence 23344444554444 4444433211 00 011122348999999999
Q ss_pred CccceeeccchhhcccccccccccCEEEEccCCC
Q 037847 426 NLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRG 459 (542)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~ 459 (542)
.+..++...+ ..+++|+.|++++|++
T Consensus 211 ~l~~~~~~~~--------~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 211 QLKSVPDGIF--------DRLTSLQKIWLHTNPW 236 (276)
T ss_dssp CCSCCCTTTT--------TTCCSCCEEECCSSCB
T ss_pred ceeecCHhHh--------cccccccEEEccCCcc
Confidence 9987655443 3389999999999987
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.73 E-value=3e-17 Score=157.57 Aligned_cols=201 Identities=19% Similarity=0.165 Sum_probs=155.6
Q ss_pred CCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcC-ccccCCCCCCCEEeccCCCCCcccHHhhcCCCCC
Q 037847 224 IPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTL-PSGISGLVSLHHLDLSSTDITGLPQELKALEKLR 302 (542)
Q Consensus 224 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l-p~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~ 302 (542)
+.++++++.++++++.++.+|... .+++++|++++| .+..+ |..+..+.+|++|++++|.++.+|.. +.+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~---~~~l~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDL---PKDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCC---CTTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCC
T ss_pred ccccCCccEEECCCCCCCcCCCCC---CCCCCEEEcCCC-cCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCC
Confidence 457788999999999998888763 378999999999 45544 66799999999999999999998765 8899999
Q ss_pred EEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCCceeeeEecchHHHHHhh
Q 037847 303 YLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFL 382 (542)
Q Consensus 303 ~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~ 382 (542)
+|++++| .+..+|.. +..+++|++|++++|.+.+..+ ..+.++++|+.|+++.+...
T Consensus 81 ~L~Ls~N-~l~~l~~~-~~~l~~L~~L~l~~N~l~~l~~---------------~~~~~l~~L~~L~L~~N~l~------ 137 (290)
T 1p9a_G 81 TLDLSHN-QLQSLPLL-GQTLPALTVLDVSFNRLTSLPL---------------GALRGLGELQELYLKGNELK------ 137 (290)
T ss_dssp EEECCSS-CCSSCCCC-TTTCTTCCEEECCSSCCCCCCS---------------STTTTCTTCCEEECTTSCCC------
T ss_pred EEECCCC-cCCcCchh-hccCCCCCEEECCCCcCcccCH---------------HHHcCCCCCCEEECCCCCCC------
Confidence 9999999 67788875 7889999999999998764322 23556677777777644311
Q ss_pred cCchhhccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccchhhcccccccccccCEEEEccCCC-CC
Q 037847 383 KYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRG-KD 461 (542)
Q Consensus 383 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~-~~ 461 (542)
......+..+++|+.|++++|.+..++...+ ..+++|+.|+|++|.+ ..
T Consensus 138 ----------------------~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~--------~~l~~L~~L~L~~N~l~~i 187 (290)
T 1p9a_G 138 ----------------------TLPPGLLTPTPKLEKLSLANNNLTELPAGLL--------NGLENLDTLLLQENSLYTI 187 (290)
T ss_dssp ----------------------CCCTTTTTTCTTCCEEECTTSCCSCCCTTTT--------TTCTTCCEEECCSSCCCCC
T ss_pred ----------------------ccChhhcccccCCCEEECCCCcCCccCHHHh--------cCcCCCCEEECCCCcCCcc
Confidence 1111234567889999999998887655443 2378899999999988 66
Q ss_pred cchhhhccCcceEEEeccchh
Q 037847 462 LTWLVFVQNLKQLNMQGFTME 482 (542)
Q Consensus 462 ~~~l~~l~~L~~L~L~~~~l~ 482 (542)
+..+..+++|+.|+|++|.+.
T Consensus 188 p~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 188 PKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CTTTTTTCCCSEEECCSCCBC
T ss_pred ChhhcccccCCeEEeCCCCcc
Confidence 666777888999999887664
No 80
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.72 E-value=8.8e-17 Score=158.97 Aligned_cols=236 Identities=13% Similarity=0.084 Sum_probs=142.1
Q ss_pred EEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCcc-ccCCCCCCCE-EeccCCC
Q 037847 210 RISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPS-GISGLVSLHH-LDLSSTD 287 (542)
Q Consensus 210 ~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~-~i~~l~~L~~-L~l~~~~ 287 (542)
.++..++.++.+|.-. .++++.|++++|.++.+++..|.++++|++|+|++|...+.+|. .|.++.+|++ +.+.+|.
T Consensus 13 ~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~ 91 (350)
T 4ay9_X 13 VFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91 (350)
T ss_dssp EEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT
T ss_pred EEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc
Confidence 4555556666665311 24667777777777666666666777777777777743444443 3455666554 3344456
Q ss_pred CCccc-HHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCCc
Q 037847 288 ITGLP-QELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLN 366 (542)
Q Consensus 288 i~~lp-~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 366 (542)
++.+| ..+..+++|++|++++| .+..+|........++..|++.++.....++
T Consensus 92 l~~l~~~~f~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~------------------------- 145 (350)
T 4ay9_X 92 LLYINPEAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIE------------------------- 145 (350)
T ss_dssp CCEECTTSBCCCTTCCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCEEC-------------------------
T ss_pred ccccCchhhhhcccccccccccc-ccccCCchhhcccchhhhhhhcccccccccc-------------------------
Confidence 66653 34566666666666666 4444544223333444555554332111110
Q ss_pred eeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceeccccc-ccccceeeecccCccceeeccchhhccccccc
Q 037847 367 VLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAY-MENLQELELESCNLEEMKIDSTEEVKKLFRNG 445 (542)
Q Consensus 367 ~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 445 (542)
...+.. ...++.|++++|.+.+++...+.
T Consensus 146 -----------------------------------------~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~--------- 175 (350)
T 4ay9_X 146 -----------------------------------------RNSFVGLSFESVILWLNKNGIQEIHNSAFN--------- 175 (350)
T ss_dssp -----------------------------------------TTSSTTSBSSCEEEECCSSCCCEECTTSST---------
T ss_pred -----------------------------------------ccchhhcchhhhhhccccccccCCChhhcc---------
Confidence 001111 23577788888888776544332
Q ss_pred ccccCEEEEccCCC-CCcc--hhhhccCcceEEEeccchhhhcccccccccccccCCcCCCCCccceeecccCCcccccC
Q 037847 446 FRNLNTVVLRSCRG-KDLT--WLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLKSVY 522 (542)
Q Consensus 446 l~~L~~L~L~~c~~-~~~~--~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 522 (542)
..+|++|.+.++.. ..++ .++.+++|++|+|++|+++.++. ..|.+|+.|.+.++.+++++|
T Consensus 176 ~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~---------------~~~~~L~~L~~l~~~~l~~lP 240 (350)
T 4ay9_X 176 GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS---------------YGLENLKKLRARSTYNLKKLP 240 (350)
T ss_dssp TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS---------------SSCTTCCEEECTTCTTCCCCC
T ss_pred ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh---------------hhhccchHhhhccCCCcCcCC
Confidence 46788888876544 4333 36788888999988888887742 347888888888888888886
Q ss_pred CCCCCCCCcceEeecc
Q 037847 523 PNPQPFPKLKKIQAFH 538 (542)
Q Consensus 523 ~~~~~~p~L~~L~i~~ 538 (542)
. ...+++|+.+++.+
T Consensus 241 ~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 241 T-LEKLVALMEASLTY 255 (350)
T ss_dssp C-TTTCCSCCEEECSC
T ss_pred C-chhCcChhhCcCCC
Confidence 3 56788888888754
No 81
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.72 E-value=3.4e-17 Score=159.27 Aligned_cols=206 Identities=17% Similarity=0.125 Sum_probs=105.6
Q ss_pred CCCCccEEEccCccccc-ccchhh-ccCCCccEEEecCCCCCCcCccccCCC-----CCCCEEeccCCCCCccc-HHhhc
Q 037847 226 TCPRLVTLLLDGNRIEE-ITDGFF-QSLSTLRVLSLRGNFPPSTLPSGISGL-----VSLHHLDLSSTDITGLP-QELKA 297 (542)
Q Consensus 226 ~~~~L~~L~l~~~~~~~-~~~~~~-~~l~~L~~L~l~~~~~~~~lp~~i~~l-----~~L~~L~l~~~~i~~lp-~~i~~ 297 (542)
++++|++|++++|.+.. .+..++ ..+++|++|++++| .+...|..++.+ ++|++|++++|.++.+| ..+++
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV-SWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESC-BCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCC-CCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 45666666666666653 233211 56666666666666 344445555544 66666666666666654 55666
Q ss_pred CCCCCEEeccCCcccCc--cchh-hcCCCCCCcEEeccCccccccccCCCCccccCCCcchh-HhhccccCCceeeeEec
Q 037847 298 LEKLRYLNLDYAFHLSI--IPHQ-LISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLM-KELLGLKHLNVLSWSFG 373 (542)
Q Consensus 298 l~~L~~L~l~~~~~~~~--lp~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~L~~L~~l~~~~~ 373 (542)
+++|++|++++|..... +|.. .++.+++|++|++++|.+.+. .... .-+..+++|+.|+++.+
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~-------------~~~~~~~~~~l~~L~~L~Ls~N 238 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETP-------------SGVCSALAAARVQLQGLDLSHN 238 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCH-------------HHHHHHHHHTTCCCSEEECTTS
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcch-------------HHHHHHHHhcCCCCCEEECCCC
Confidence 66666666666633222 2222 015666666666666654310 0011 11122333333333322
Q ss_pred chHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccchhhcccccccccccCEEE
Q 037847 374 SSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVV 453 (542)
Q Consensus 374 ~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 453 (542)
.... ......+..+++|++|++++|.+..++. ..+++|++|+
T Consensus 239 ~l~~---------------------------~~~~~~~~~l~~L~~L~Ls~N~l~~ip~-----------~~~~~L~~L~ 280 (312)
T 1wwl_A 239 SLRD---------------------------AAGAPSCDWPSQLNSLNLSFTGLKQVPK-----------GLPAKLSVLD 280 (312)
T ss_dssp CCCS---------------------------SCCCSCCCCCTTCCEEECTTSCCSSCCS-----------SCCSEEEEEE
T ss_pred cCCc---------------------------ccchhhhhhcCCCCEEECCCCccChhhh-----------hccCCceEEE
Confidence 1000 0000112234667777777776664321 1125677777
Q ss_pred EccCCCCCcchhhhccCcceEEEeccchhh
Q 037847 454 LRSCRGKDLTWLVFVQNLKQLNMQGFTMEE 483 (542)
Q Consensus 454 L~~c~~~~~~~l~~l~~L~~L~L~~~~l~~ 483 (542)
+++|.+...+.+..+++|++|+|++|.+++
T Consensus 281 Ls~N~l~~~p~~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 281 LSYNRLDRNPSPDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCSSCCCSCCCTTTSCEEEEEECTTCTTTC
T ss_pred CCCCCCCCChhHhhCCCCCEEeccCCCCCC
Confidence 777766333446667777777777766553
No 82
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.72 E-value=3.2e-19 Score=183.67 Aligned_cols=129 Identities=21% Similarity=0.239 Sum_probs=60.2
Q ss_pred cceEEEeecCCcCCCC--C-CCCCCCccEEEccCcccccc----cchhhccCCCccEEEecCCCCCCc-CccccC-CCC-
Q 037847 207 GAKRISLTANGIGSLS--E-IPTCPRLVTLLLDGNRIEEI----TDGFFQSLSTLRVLSLRGNFPPST-LPSGIS-GLV- 276 (542)
Q Consensus 207 ~l~~l~l~~~~~~~~~--~-~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~-lp~~i~-~l~- 276 (542)
.++.|++.++.+...+ . +..+++|++|++++|.+... .+..+..+++|++|++++|. +.. .+..+. .+.
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHTTCS
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHHHHHHHHHHhh
Confidence 4555555555544321 1 34455566666666654421 12224455666666666652 221 121221 222
Q ss_pred ---CCCEEeccCCCCC-----cccHHhhcCCCCCEEeccCCcccCccc----hhhcCCCCCCcEEeccCccc
Q 037847 277 ---SLHHLDLSSTDIT-----GLPQELKALEKLRYLNLDYAFHLSIIP----HQLISCFSKLEVLRLCGCGR 336 (542)
Q Consensus 277 ---~L~~L~l~~~~i~-----~lp~~i~~l~~L~~L~l~~~~~~~~lp----~~~~~~l~~L~~L~l~~~~~ 336 (542)
+|++|++++|.++ .+|..+.++++|++|++++|......+ .......++|++|++++|.+
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l 154 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSL 154 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCC
Confidence 4666666666555 245555566666666666653211111 11112234566666665554
No 83
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.72 E-value=5e-17 Score=151.68 Aligned_cols=138 Identities=14% Similarity=0.241 Sum_probs=119.3
Q ss_pred cccCCcccccccceEEEeecCCcCCCCC--CCCCCCccEEEccCcc-cccccchhhccCCCccEEEecC-CCCCCcCc-c
Q 037847 196 LTEAPKVEEWEGAKRISLTANGIGSLSE--IPTCPRLVTLLLDGNR-IEEITDGFFQSLSTLRVLSLRG-NFPPSTLP-S 270 (542)
Q Consensus 196 ~~~~~~~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~-~~~~~~lp-~ 270 (542)
+..+|. -...++.+++.++.+..++. +.++++|++|++++|. ++.+++..|..+++|++|++++ | .+..+| .
T Consensus 23 l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n-~l~~i~~~ 99 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR-NLTYIDPD 99 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEET-TCCEECTT
T ss_pred ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCC-CeeEcCHH
Confidence 566666 33589999999999998864 8899999999999996 8888887799999999999998 6 677766 4
Q ss_pred ccCCCCCCCEEeccCCCCCcccHHhhcCCCCC---EEeccCCcccCccchhhcCCCCCCc-EEeccCcccc
Q 037847 271 GISGLVSLHHLDLSSTDITGLPQELKALEKLR---YLNLDYAFHLSIIPHQLISCFSKLE-VLRLCGCGRF 337 (542)
Q Consensus 271 ~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~---~L~l~~~~~~~~lp~~~~~~l~~L~-~L~l~~~~~~ 337 (542)
.+..+++|++|++++|.++.+|. +..+++|+ +|++++|..+..+|...+..+++|+ +|++++|.+.
T Consensus 100 ~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~ 169 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT 169 (239)
T ss_dssp SEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC
T ss_pred HhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc
Confidence 68899999999999999999997 88888888 9999999667778876688899999 9999888754
No 84
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.71 E-value=1.1e-18 Score=179.65 Aligned_cols=312 Identities=17% Similarity=0.124 Sum_probs=177.2
Q ss_pred cccceEEEeecCCcCCC--C----CCCCCC-CccEEEccCcccccc----cchhhccCCCccEEEecCCCCCC-cCcccc
Q 037847 205 WEGAKRISLTANGIGSL--S----EIPTCP-RLVTLLLDGNRIEEI----TDGFFQSLSTLRVLSLRGNFPPS-TLPSGI 272 (542)
Q Consensus 205 ~~~l~~l~l~~~~~~~~--~----~~~~~~-~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~-~lp~~i 272 (542)
.++++.|++++|.+... . .+.... +|++|++++|.+... .+..+..+++|++|++++|. +. ..+..+
T Consensus 55 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l 133 (461)
T 1z7x_W 55 NPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLL 133 (461)
T ss_dssp CTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHH
T ss_pred CCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHH
Confidence 35677777777665431 1 111111 577777777766532 24446677777777777773 32 112211
Q ss_pred -----CCCCCCCEEeccCCCCCc-----ccHHhhcCCCCCEEeccCCcccCcc-chh----hcCCCCCCcEEeccCcccc
Q 037847 273 -----SGLVSLHHLDLSSTDITG-----LPQELKALEKLRYLNLDYAFHLSII-PHQ----LISCFSKLEVLRLCGCGRF 337 (542)
Q Consensus 273 -----~~l~~L~~L~l~~~~i~~-----lp~~i~~l~~L~~L~l~~~~~~~~l-p~~----~~~~l~~L~~L~l~~~~~~ 337 (542)
....+|++|++++|.++. ++..+..+++|++|++++|. +... +.. .....++|++|++++|.+.
T Consensus 134 ~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 212 (461)
T 1z7x_W 134 CEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCGVT 212 (461)
T ss_dssp HHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSCCB
T ss_pred HHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCCCc
Confidence 224567777777776664 45556667777777777774 3221 111 1113557777777777654
Q ss_pred ccccCCCCccccCCCcchhHhhccccCCceeeeEecchHHH--HHhhc-CchhhccceeEEeccccCCCCCc--eecccc
Q 037847 338 GVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAV--QKFLK-YPKLVSITQSVWVECGTYTRPPF--NVLHLA 412 (542)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~--~~l~~-~~~~~~~l~~l~l~~~~~~~~~~--~~~~l~ 412 (542)
.. ........+..+++|+.|+++.+..... ..+.. .......++.|++.++..+.... ....+.
T Consensus 213 ~~-----------~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 281 (461)
T 1z7x_W 213 SD-----------NCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR 281 (461)
T ss_dssp TT-----------HHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH
T ss_pred HH-----------HHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHh
Confidence 21 0112345567788888888887754321 11111 11124567888887764311100 112345
Q ss_pred cccccceeeecccCccceeeccchhhcccccccccccCEEEEccCCC-CC-----cchhhhccCcceEEEeccchhhhcc
Q 037847 413 YMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRG-KD-----LTWLVFVQNLKQLNMQGFTMEEIIS 486 (542)
Q Consensus 413 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~-~~-----~~~l~~l~~L~~L~L~~~~l~~~~~ 486 (542)
.+++|++|++++|.+....+..+.. ......++|++|++++|.+ .. +..+..+++|++|+|++|.+.+...
T Consensus 282 ~~~~L~~L~Ls~n~i~~~~~~~l~~---~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~ 358 (461)
T 1z7x_W 282 AKESLKELSLAGNELGDEGARLLCE---TLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGV 358 (461)
T ss_dssp HCTTCCEEECTTCCCHHHHHHHHHH---HHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHH
T ss_pred hCCCcceEECCCCCCchHHHHHHHH---HhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccH
Confidence 5788999999998876532221111 1112236899999999887 21 2345677899999999888776533
Q ss_pred cccccccccccCCcCCCCCccceeecccCCccc-----ccCCCCCCCCCcceEeeccCC
Q 037847 487 VEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLK-----SVYPNPQPFPKLKKIQAFHCR 540 (542)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~-----~~~~~~~~~p~L~~L~i~~C~ 540 (542)
...... -....++|++|++.+|. +. .++.....+++|++|++++|+
T Consensus 359 ~~l~~~-------l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 359 RELCQG-------LGQPGSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp HHHHHH-------HTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred HHHHHH-------HcCCCCceEEEECCCCC-CChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 111000 11126688888888873 44 344344457888888888774
No 85
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.71 E-value=6.5e-17 Score=155.39 Aligned_cols=102 Identities=25% Similarity=0.338 Sum_probs=46.5
Q ss_pred CCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccCCCCCcccHHhhcCCCCCEEe
Q 037847 226 TCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLN 305 (542)
Q Consensus 226 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~ 305 (542)
.+++|+.|++++|.+..++. +..+++|++|++++| .+..++. ++.+++|++|++++|.++.+|. +..+++|++|+
T Consensus 44 ~l~~L~~L~l~~~~i~~~~~--~~~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~ 118 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLS 118 (291)
T ss_dssp HHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEE
T ss_pred hcCcccEEEccCCCcccChh--HhcCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEE
Confidence 33444444444444443322 444444555555544 3333433 4444555555555554444432 44455555555
Q ss_pred ccCCcccCccchhhcCCCCCCcEEeccCcc
Q 037847 306 LDYAFHLSIIPHQLISCFSKLEVLRLCGCG 335 (542)
Q Consensus 306 l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~ 335 (542)
+++| .+..++. +..+++|++|++++|.
T Consensus 119 L~~n-~i~~~~~--l~~l~~L~~L~l~~n~ 145 (291)
T 1h6t_A 119 LEHN-GISDING--LVHLPQLESLYLGNNK 145 (291)
T ss_dssp CTTS-CCCCCGG--GGGCTTCCEEECCSSC
T ss_pred CCCC-cCCCChh--hcCCCCCCEEEccCCc
Confidence 5544 3333332 4444555555554443
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.68 E-value=1.5e-16 Score=154.57 Aligned_cols=228 Identities=16% Similarity=0.088 Sum_probs=118.5
Q ss_pred cceEEEeecCCcCC-----CCCCCCCCCccEEEccCcccccccchhh--ccCCCccEEEecCCCCCCcCc----cccCCC
Q 037847 207 GAKRISLTANGIGS-----LSEIPTCPRLVTLLLDGNRIEEITDGFF--QSLSTLRVLSLRGNFPPSTLP----SGISGL 275 (542)
Q Consensus 207 ~l~~l~l~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~lp----~~i~~l 275 (542)
.++.+.+....+.. +.....+++|+.|++++|.+....+..+ ..+++|++|++++|......| ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 35555555554432 1112234457777777776655444434 666777777777773332222 234456
Q ss_pred CCCCEEeccCCCCCccc-HHhhcCCCCCEEeccCCcccCc--cchh-hcCCCCCCcEEeccCccccccccCCCCccccCC
Q 037847 276 VSLHHLDLSSTDITGLP-QELKALEKLRYLNLDYAFHLSI--IPHQ-LISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDG 351 (542)
Q Consensus 276 ~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~~~~~~~--lp~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 351 (542)
++|++|++++|.+..+| ..++.+++|++|++++|..... ++.. .++.+++|++|++++|.+...
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l------------ 212 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETP------------ 212 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCH------------
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCch------------
Confidence 67777777777776644 4566777777777777732221 2211 135667777777777665310
Q ss_pred CcchhHh-hccccCCceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCccce
Q 037847 352 AEPLMKE-LLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEM 430 (542)
Q Consensus 352 ~~~~~~~-l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 430 (542)
+..... ++.+++|+.|+++.+.... ..+.....+..+++|++|++++|.+..+
T Consensus 213 -~~~~~~l~~~l~~L~~L~Ls~N~l~~-------------------------~~p~~~~~~~~~~~L~~L~Ls~N~l~~l 266 (310)
T 4glp_A 213 -TGVCAALAAAGVQPHSLDLSHNSLRA-------------------------TVNPSAPRCMWSSALNSLNLSFAGLEQV 266 (310)
T ss_dssp -HHHHHHHHHHTCCCSSEECTTSCCCC-------------------------CCCSCCSSCCCCTTCCCEECCSSCCCSC
T ss_pred -HHHHHHHHhcCCCCCEEECCCCCCCc-------------------------cchhhHHhccCcCcCCEEECCCCCCCch
Confidence 011111 2333444444444322100 0000011122235777777777766653
Q ss_pred eeccchhhcccccccccccCEEEEccCCCCCcchhhhccCcceEEEeccchhh
Q 037847 431 KIDSTEEVKKLFRNGFRNLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEE 483 (542)
Q Consensus 431 ~~~~~~~~~~~~~~~l~~L~~L~L~~c~~~~~~~l~~l~~L~~L~L~~~~l~~ 483 (542)
+. ..+++|+.|+|++|.+..++.+..+++|+.|+|++|.+++
T Consensus 267 p~-----------~~~~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 267 PK-----------GLPAKLRVLDLSSNRLNRAPQPDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CS-----------CCCSCCSCEECCSCCCCSCCCTTSCCCCSCEECSSTTTSC
T ss_pred hh-----------hhcCCCCEEECCCCcCCCCchhhhCCCccEEECcCCCCCC
Confidence 21 1136677777777776433445666777777777766543
No 87
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.68 E-value=1.3e-16 Score=169.32 Aligned_cols=163 Identities=20% Similarity=0.347 Sum_probs=133.3
Q ss_pred CCeeec---CCCChhhHHHHHHHHhccccCCCCCCHHHHHHHHHHHhCCChhHHHHHHHHHhcCCChhHHHHHHHHHhcc
Q 037847 3 AEKLEV---YSLAHDKAWELFQEMVERSTLDSHTSIPELAETLARECGGLPLALKIVGRAMKSQRKVGDWKRAINKMRTS 79 (542)
Q Consensus 3 ~~~~~l---~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~kc~GlPlai~~ig~~L~~~~~~~~W~~~~~~l~~~ 79 (542)
+..|++ ++|+++||++||.+.++... ....+.+.+|+++|+|+||||+.+|+.|+.. ...|+.+++.+...
T Consensus 275 ~~~~~v~~l~~L~~~ea~~L~~~~~~~~~----~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~--~~~w~~~l~~l~~~ 348 (591)
T 1z6t_A 275 GPKYVVPVESSLGKEKGLEILSLFVNMKK----ADLPEQAHSIIKECKGSPLVVSLIGALLRDF--PNRWEYYLKQLQNK 348 (591)
T ss_dssp SCEEEEECCSSCCHHHHHHHHHHHHTSCG----GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHS--TTCHHHHHHHHHSC
T ss_pred CCceEeecCCCCCHHHHHHHHHHHhCCCc----ccccHHHHHHHHHhCCCcHHHHHHHHHHhcC--chhHHHHHHHHHHh
Confidence 345666 48999999999999987532 2224678999999999999999999999884 35799998888765
Q ss_pred cCC-C----CCChHHHHHHHHhhcCCCCchhhhHHHhhhccCCCCcccChHHHHHHHHHcCCccccchhchHHHHHHHhc
Q 037847 80 ASK-F----SGMKEEVFSRLKFSYDSLSTDELRSCLLYCYLYPEDYEIPKRELIDYWISEGFVYDFDDGCDFIDDLLQAC 154 (542)
Q Consensus 80 ~~~-~----~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~~~~~~Li~~w~a~g~i~~~~~~~~~~~~L~~~~ 154 (542)
... . ......+..++..||+.||+ +.|.||+++|+||+|+.|+.+.++..|.+++ +.+..++++|++++
T Consensus 349 ~~~~~~~~~~~~~~~l~~~l~~s~~~L~~-~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~-----~~~~~~l~~L~~~~ 422 (591)
T 1z6t_A 349 QFKRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCILWDMET-----EEVEDILQEFVNKS 422 (591)
T ss_dssp CCCCSSCCCSSCCHHHHHHHHHHHHTSCT-TTHHHHHHGGGCCTTCCEEHHHHHHHHTCCH-----HHHHHHHHHHHHTT
T ss_pred HHHHhhhccccchHHHHHHHHHHHHhCCH-HHHHHHHHccccCCCCccCHHHHHHHhccCH-----HHHHHHHHHHHhCc
Confidence 432 1 11224789999999999999 8999999999999999999999999997642 46788999999999
Q ss_pred ccccc---CCCeEEeehHHHHHHHHH
Q 037847 155 LLEEE---GDDHVKMHDMIREMSLWI 177 (542)
Q Consensus 155 l~~~~---~~~~~~mhdl~~~~~~~i 177 (542)
+++.. ....|+||+++++++...
T Consensus 423 Ll~~~~~~~~~~~~~H~lv~~~~~~~ 448 (591)
T 1z6t_A 423 LLFCDRNGKSFRYYLHDLQVDFLTEK 448 (591)
T ss_dssp SSEEEEETTEEEEECCHHHHHHHHHH
T ss_pred CeEEecCCCccEEEEcHHHHHHHHhh
Confidence 99863 334799999999999865
No 88
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.67 E-value=3e-17 Score=174.55 Aligned_cols=126 Identities=21% Similarity=0.210 Sum_probs=72.0
Q ss_pred cccceEEEeecCCcCCCC------CCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCC---CcCccccCCC
Q 037847 205 WEGAKRISLTANGIGSLS------EIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPP---STLPSGISGL 275 (542)
Q Consensus 205 ~~~l~~l~l~~~~~~~~~------~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~---~~lp~~i~~l 275 (542)
+..++.|++.++.+..+. .+.++++|++|++++|.+..++ ..+..+++|+.|+++++... ...+..++.+
T Consensus 191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~ 269 (592)
T 3ogk_B 191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELV-GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFP 269 (592)
T ss_dssp CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGH-HHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCC
T ss_pred CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHH-HHHhhhhHHHhhcccccccccchHHHHHHhhcc
Confidence 355666666665554221 1235566666666666655544 33566666666666543221 2333455566
Q ss_pred CCCCEEeccCCCCCcccHHhhcCCCCCEEeccCCcccC-ccchhhcCCCCCCcEEecc
Q 037847 276 VSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLS-IIPHQLISCFSKLEVLRLC 332 (542)
Q Consensus 276 ~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~-~lp~~~~~~l~~L~~L~l~ 332 (542)
.+|+.|+++++....+|..+..+++|++|++++|. +. ......+..+++|++|++.
T Consensus 270 ~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 270 RKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp TTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEE
T ss_pred ccccccCccccchhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEecc
Confidence 66666666665555566667777777777777774 32 1121235667777777776
No 89
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.67 E-value=8.8e-17 Score=169.30 Aligned_cols=38 Identities=21% Similarity=0.184 Sum_probs=17.7
Q ss_pred ccccCEEEEccCCCCCcchhhhccCcceEEEeccchhh
Q 037847 446 FRNLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEE 483 (542)
Q Consensus 446 l~~L~~L~L~~c~~~~~~~l~~l~~L~~L~L~~~~l~~ 483 (542)
+++|+.|+|++|.+..++.+..+++|+.|+|++|.+..
T Consensus 174 l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 174 LTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CTTCCEEECCSSCCCBCGGGTTCTTCSEEECCSEEEEC
T ss_pred CCCCCEEECcCCCCCCChHHccCCCCCEEEccCCcCcC
Confidence 44444444444444333444445555555555544433
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.67 E-value=5.4e-17 Score=159.70 Aligned_cols=221 Identities=17% Similarity=0.161 Sum_probs=140.4
Q ss_pred cceEEEeecCCcCCCCCCCCC--CCccEEEccCcccccccchhhccCCCccEEEecCCCCCC-c-CccccCCCCCCCEEe
Q 037847 207 GAKRISLTANGIGSLSEIPTC--PRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPS-T-LPSGISGLVSLHHLD 282 (542)
Q Consensus 207 ~l~~l~l~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~-lp~~i~~l~~L~~L~ 282 (542)
..+++++.++.+.. ..+..+ ++++.|++++|.+...++. +..+++|++|++++|. +. . +|..+..+++|++|+
T Consensus 48 ~~~~l~l~~~~~~~-~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 48 LWQTLDLTGKNLHP-DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp TSSEEECTTCBCCH-HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEE
T ss_pred hheeeccccccCCH-HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCC-cCHHHHHHHHhhCCCCCEEe
Confidence 35677777765541 112333 6788888888877766655 4568888888888884 43 3 677778888888888
Q ss_pred ccCCCCCc-ccHHhhcCCCCCEEeccCCcccC--ccchhhcCCCCCCcEEeccCc-cccccccCCCCccccCCCcchhHh
Q 037847 283 LSSTDITG-LPQELKALEKLRYLNLDYAFHLS--IIPHQLISCFSKLEVLRLCGC-GRFGVIKGKEGNVLCDGAEPLMKE 358 (542)
Q Consensus 283 l~~~~i~~-lp~~i~~l~~L~~L~l~~~~~~~--~lp~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 358 (542)
+++|.++. .|..++.+++|++|++++|..+. .+|.. +.++++|++|++++| .+.. ......
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~-~~~~~~L~~L~l~~~~~l~~--------------~~~~~~ 189 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL-LSSCSRLDELNLSWCFDFTE--------------KHVQVA 189 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHH-HHHCTTCCEEECCCCTTCCH--------------HHHHHH
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHH-HhcCCCCCEEcCCCCCCcCh--------------HHHHHH
Confidence 88887774 67778888888888888885454 25543 677888888888888 5431 113344
Q ss_pred hcccc-CCceeeeEecch-HHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccC-ccceeeccc
Q 037847 359 LLGLK-HLNVLSWSFGSS-LAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCN-LEEMKIDST 435 (542)
Q Consensus 359 l~~L~-~L~~l~~~~~~~-~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~ 435 (542)
+..++ +|+.|+++.+.. .....+. ..+..+++|++|++++|. +....+..+
T Consensus 190 ~~~l~~~L~~L~l~~~~~~~~~~~l~--------------------------~~~~~~~~L~~L~l~~~~~l~~~~~~~l 243 (336)
T 2ast_B 190 VAHVSETITQLNLSGYRKNLQKSDLS--------------------------TLVRRCPNLVHLDLSDSVMLKNDCFQEF 243 (336)
T ss_dssp HHHSCTTCCEEECCSCGGGSCHHHHH--------------------------HHHHHCTTCSEEECTTCTTCCGGGGGGG
T ss_pred HHhcccCCCEEEeCCCcccCCHHHHH--------------------------HHHhhCCCCCEEeCCCCCcCCHHHHHHH
Confidence 66677 788777776531 1111111 123345677777777776 332222111
Q ss_pred hhhcccccccccccCEEEEccCCC---CCcchhhhccCcceEEEecc
Q 037847 436 EEVKKLFRNGFRNLNTVVLRSCRG---KDLTWLVFVQNLKQLNMQGF 479 (542)
Q Consensus 436 ~~~~~~~~~~l~~L~~L~L~~c~~---~~~~~l~~l~~L~~L~L~~~ 479 (542)
..+++|++|++++|.. ..+..++.+++|++|+|+++
T Consensus 244 --------~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 244 --------FQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp --------GGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred --------hCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 2356777777777743 22334566777777777766
No 91
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.66 E-value=8.4e-17 Score=161.50 Aligned_cols=244 Identities=16% Similarity=0.090 Sum_probs=106.7
Q ss_pred CCCCccEEEccCcccccccch----hhccCCCccEEEecCCCCCC----cCcccc-------CCCCCCCEEeccCCCCCc
Q 037847 226 TCPRLVTLLLDGNRIEEITDG----FFQSLSTLRVLSLRGNFPPS----TLPSGI-------SGLVSLHHLDLSSTDITG 290 (542)
Q Consensus 226 ~~~~L~~L~l~~~~~~~~~~~----~~~~l~~L~~L~l~~~~~~~----~lp~~i-------~~l~~L~~L~l~~~~i~~ 290 (542)
.+++|+.|++++|.+...... .+..+++|++|++++| .+. .+|..+ ..+++|++|++++|.++.
T Consensus 30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~-~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 108 (386)
T 2ca6_A 30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI-FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP 108 (386)
T ss_dssp HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSC-CTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT
T ss_pred cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCccc-ccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCH
Confidence 445555556655554432211 1345555666666554 222 223332 455566666666655554
Q ss_pred -----ccHHhhcCCCCCEEeccCCcccC----ccchhhcCCC---------CCCcEEeccCccccccccCCCCccccCCC
Q 037847 291 -----LPQELKALEKLRYLNLDYAFHLS----IIPHQLISCF---------SKLEVLRLCGCGRFGVIKGKEGNVLCDGA 352 (542)
Q Consensus 291 -----lp~~i~~l~~L~~L~l~~~~~~~----~lp~~~~~~l---------~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 352 (542)
+|..+.++++|++|++++|.... .++.. +..+ ++|++|++++|.+... ..
T Consensus 109 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~-l~~l~~~~~~~~~~~L~~L~L~~n~l~~~-----------~~ 176 (386)
T 2ca6_A 109 TAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARA-LQELAVNKKAKNAPPLRSIICGRNRLENG-----------SM 176 (386)
T ss_dssp TTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHH-HHHHHHHHHHHTCCCCCEEECCSSCCTGG-----------GH
T ss_pred HHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHH-HHHHhhhhhcccCCCCcEEECCCCCCCcH-----------HH
Confidence 45555556666666665553211 11111 2222 5566666655554310 00
Q ss_pred cchhHhhccccCCceeeeEecchH--HHHHhhc-CchhhccceeEEeccccCCCC--CceecccccccccceeeecccCc
Q 037847 353 EPLMKELLGLKHLNVLSWSFGSSL--AVQKFLK-YPKLVSITQSVWVECGTYTRP--PFNVLHLAYMENLQELELESCNL 427 (542)
Q Consensus 353 ~~~~~~l~~L~~L~~l~~~~~~~~--~~~~l~~-~~~~~~~l~~l~l~~~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~ 427 (542)
......+..+++|+.|+++.+... ....+.. .....+.++.|++.++..+.. ......+..+++|++|++++|.+
T Consensus 177 ~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i 256 (386)
T 2ca6_A 177 KEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL 256 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCC
T ss_pred HHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCC
Confidence 111133445555555555544322 1111111 111122233333322221000 00011344556677777777766
Q ss_pred cceeeccchhhcccccccccccCEEEEccCCC-C-----Ccchh-hhccCcceEEEeccchhhh
Q 037847 428 EEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRG-K-----DLTWL-VFVQNLKQLNMQGFTMEEI 484 (542)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~-~-----~~~~l-~~l~~L~~L~L~~~~l~~~ 484 (542)
.......+. ..+....+++|+.|+|++|.+ . .+..+ .++++|++|+|++|.+...
T Consensus 257 ~~~~~~~l~--~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 257 SARGAAAVV--DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp CHHHHHHHH--HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred chhhHHHHH--HHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence 542111000 001012256677777777766 3 22233 3467777777777666543
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.65 E-value=2.2e-15 Score=141.52 Aligned_cols=129 Identities=22% Similarity=0.275 Sum_probs=100.4
Q ss_pred cceEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccCC
Q 037847 207 GAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSST 286 (542)
Q Consensus 207 ~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~ 286 (542)
..+.+++.++.+..+|... .++++.|++++|.+..+++..+..+++|++|++++|......|..+..+.+|++|++++|
T Consensus 15 ~~~~l~~~~~~l~~~p~~~-~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGI-PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp GGTEEECTTCCCSSCCSCC-CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CCeEEecCCCCccccCCCC-CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 4567888888888877532 268889999999888887777888899999999998433334445788889999999998
Q ss_pred CCCcccH-HhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCcccc
Q 037847 287 DITGLPQ-ELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRF 337 (542)
Q Consensus 287 ~i~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~ 337 (542)
.++.+|. .+..+++|++|++++| .+..+|...+..+++|++|++++|.+.
T Consensus 94 ~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 144 (251)
T 3m19_A 94 QLASLPLGVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTNQLQ 144 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred cccccChhHhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCCcCC
Confidence 8888764 4678889999999888 666777765778888888888888654
No 93
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.65 E-value=3.9e-17 Score=173.65 Aligned_cols=283 Identities=12% Similarity=0.050 Sum_probs=137.8
Q ss_pred CCCCccEEEccCcccccc----cchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccCCCC----CcccHHhhc
Q 037847 226 TCPRLVTLLLDGNRIEEI----TDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDI----TGLPQELKA 297 (542)
Q Consensus 226 ~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~i----~~lp~~i~~ 297 (542)
.+++|++|++++|.+... .+..+..+++|++|++++| .+..+|..+..+++|++|+++.... ...+..+..
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 268 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF-EILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC-BGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc-cHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence 345555555555544311 1122344555555555555 3444555555555555555543211 123334455
Q ss_pred CCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCCceeeeEecchHH
Q 037847 298 LEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLA 377 (542)
Q Consensus 298 l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~ 377 (542)
+++|+.|+++++ ....+|.. +..+++|++|++++|.+... ....-+..+++|+.|++. + ...
T Consensus 269 ~~~L~~L~l~~~-~~~~l~~~-~~~~~~L~~L~Ls~~~l~~~--------------~~~~~~~~~~~L~~L~L~-~-~~~ 330 (592)
T 3ogk_B 269 PRKLCRLGLSYM-GPNEMPIL-FPFAAQIRKLDLLYALLETE--------------DHCTLIQKCPNLEVLETR-N-VIG 330 (592)
T ss_dssp CTTCCEEEETTC-CTTTGGGG-GGGGGGCCEEEETTCCCCHH--------------HHHHHHTTCTTCCEEEEE-G-GGH
T ss_pred cccccccCcccc-chhHHHHH-HhhcCCCcEEecCCCcCCHH--------------HHHHHHHhCcCCCEEecc-C-ccC
Confidence 555555555554 33445553 56677888888887764311 112235667777777776 2 222
Q ss_pred HHHhhcCchhhccceeEEecc----------ccCCCCCceec-ccccccccceeeecccCccceeeccchh---------
Q 037847 378 VQKFLKYPKLVSITQSVWVEC----------GTYTRPPFNVL-HLAYMENLQELELESCNLEEMKIDSTEE--------- 437 (542)
Q Consensus 378 ~~~l~~~~~~~~~l~~l~l~~----------~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~--------- 437 (542)
...+.......+.++.|.+.+ +.. ....... ....+++|++|++..+.+....+..+..
T Consensus 331 ~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~-~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~ 409 (592)
T 3ogk_B 331 DRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGL-VSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFR 409 (592)
T ss_dssp HHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCC-CCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEE
T ss_pred HHHHHHHHHhCCCCCEEEeecCccccccccccCc-cCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEE
Confidence 222222223345567777763 211 0000011 1223556666666444433211110000
Q ss_pred ---------hcc--------cccccccccCEEEEccCC--C--CCcchhh-hccCcceEEEeccchhhhccccccccccc
Q 037847 438 ---------VKK--------LFRNGFRNLNTVVLRSCR--G--KDLTWLV-FVQNLKQLNMQGFTMEEIISVEKLSDISE 495 (542)
Q Consensus 438 ---------~~~--------~~~~~l~~L~~L~L~~c~--~--~~~~~l~-~l~~L~~L~L~~~~l~~~~~~~~~~~~~~ 495 (542)
.+. .....+++|++|++++|. + ..+..+. .+++|++|+|++|.+++...
T Consensus 410 l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~--------- 480 (592)
T 3ogk_B 410 LVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGL--------- 480 (592)
T ss_dssp EEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHH---------
T ss_pred EeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHH---------
Confidence 000 001235566666665443 2 2222333 35666666666665544221
Q ss_pred ccCCcCCCCCccceeecccCCcccc--cCCCCCCCCCcceEeeccCC
Q 037847 496 VIGSEHNFFPRLEYLTMWRGTNLKS--VYPNPQPFPKLKKIQAFHCR 540 (542)
Q Consensus 496 ~~~~~~~~~~~L~~L~l~~c~~l~~--~~~~~~~~p~L~~L~i~~C~ 540 (542)
+.....+++|++|++.+|+ +.. ++.....+|+|++|++++|+
T Consensus 481 --~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 481 --MEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp --HHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred --HHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence 1133557888888888887 432 22223357889999988885
No 94
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.64 E-value=1.6e-15 Score=145.61 Aligned_cols=149 Identities=26% Similarity=0.333 Sum_probs=124.2
Q ss_pred CcccccccceEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCC
Q 037847 200 PKVEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLH 279 (542)
Q Consensus 200 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~ 279 (542)
.....+.+++.+++.++.+..++.+..+++|++|++++|.++.+++ +..+++|++|++++| .+..+| .++.+.+|+
T Consensus 40 ~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~ 115 (291)
T 1h6t_A 40 VTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDEN-KVKDLS-SLKDLKKLK 115 (291)
T ss_dssp ECHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCGG-GGTTCTTCC
T ss_pred cchhhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCC-cCCCCh-hhccCCCCC
Confidence 3445678899999999999999889999999999999999988776 889999999999999 677776 599999999
Q ss_pred EEeccCCCCCcccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhh
Q 037847 280 HLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKEL 359 (542)
Q Consensus 280 ~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 359 (542)
+|++++|.++.++ .+..+++|++|++++| .+..++. ++.+++|++|++++|.+.+. ..+
T Consensus 116 ~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~L~~N~l~~~-----------------~~l 174 (291)
T 1h6t_A 116 SLSLEHNGISDIN-GLVHLPQLESLYLGNN-KITDITV--LSRLTKLDTLSLEDNQISDI-----------------VPL 174 (291)
T ss_dssp EEECTTSCCCCCG-GGGGCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECCSSCCCCC-----------------GGG
T ss_pred EEECCCCcCCCCh-hhcCCCCCCEEEccCC-cCCcchh--hccCCCCCEEEccCCccccc-----------------hhh
Confidence 9999999999884 6889999999999999 5666754 88999999999999986531 015
Q ss_pred ccccCCceeeeEec
Q 037847 360 LGLKHLNVLSWSFG 373 (542)
Q Consensus 360 ~~L~~L~~l~~~~~ 373 (542)
..+++|+.|+++.+
T Consensus 175 ~~l~~L~~L~L~~N 188 (291)
T 1h6t_A 175 AGLTKLQNLYLSKN 188 (291)
T ss_dssp TTCTTCCEEECCSS
T ss_pred cCCCccCEEECCCC
Confidence 56666666666544
No 95
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.63 E-value=1.3e-16 Score=157.07 Aligned_cols=229 Identities=20% Similarity=0.178 Sum_probs=168.4
Q ss_pred ccceEEEeecCCcCCC-CCCCCCCCccEEEccCcccccc-cchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEec
Q 037847 206 EGAKRISLTANGIGSL-SEIPTCPRLVTLLLDGNRIEEI-TDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDL 283 (542)
Q Consensus 206 ~~l~~l~l~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l 283 (542)
..++.+++.++.+... +.+..+++|+.|++++|.+... .+..+..+++|++|++++|......|..++.+++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 6889999999988765 4577899999999999987653 4455889999999999999544467888999999999999
Q ss_pred cCC-CCCc--ccHHhhcCCCCCEEeccCCcccCc--cchhhcCCCC-CCcEEeccCcc--ccccccCCCCccccCCCcch
Q 037847 284 SST-DITG--LPQELKALEKLRYLNLDYAFHLSI--IPHQLISCFS-KLEVLRLCGCG--RFGVIKGKEGNVLCDGAEPL 355 (542)
Q Consensus 284 ~~~-~i~~--lp~~i~~l~~L~~L~l~~~~~~~~--lp~~~~~~l~-~L~~L~l~~~~--~~~~~~~~~~~~~~~~~~~~ 355 (542)
++| .++. +|..+.++++|++|++++|..+.. ++.. +..++ +|++|++++|. +. ....
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-~~~l~~~L~~L~l~~~~~~~~--------------~~~l 214 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA-VAHVSETITQLNLSGYRKNLQ--------------KSDL 214 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH-HHHSCTTCCEEECCSCGGGSC--------------HHHH
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHH-HHhcccCCCEEEeCCCcccCC--------------HHHH
Confidence 999 7884 788899999999999999944443 4554 78899 99999999985 22 1233
Q ss_pred hHhhccccCCceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccc
Q 037847 356 MKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDST 435 (542)
Q Consensus 356 ~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 435 (542)
...+.++++|+.|+++.+.... ......+..+++|++|++++|.... ....
T Consensus 215 ~~~~~~~~~L~~L~l~~~~~l~---------------------------~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~ 265 (336)
T 2ast_B 215 STLVRRCPNLVHLDLSDSVMLK---------------------------NDCFQEFFQLNYLQHLSLSRCYDII--PETL 265 (336)
T ss_dssp HHHHHHCTTCSEEECTTCTTCC---------------------------GGGGGGGGGCTTCCEEECTTCTTCC--GGGG
T ss_pred HHHHhhCCCCCEEeCCCCCcCC---------------------------HHHHHHHhCCCCCCEeeCCCCCCCC--HHHH
Confidence 4456678888888887554110 1112345667999999999996221 1111
Q ss_pred hhhcccccccccccCEEEEccCCC--CCcchhhhccCcceEEEeccchhhhcc
Q 037847 436 EEVKKLFRNGFRNLNTVVLRSCRG--KDLTWLVFVQNLKQLNMQGFTMEEIIS 486 (542)
Q Consensus 436 ~~~~~~~~~~l~~L~~L~L~~c~~--~~~~~l~~l~~L~~L~L~~~~l~~~~~ 486 (542)
.....+++|+.|++++| . ..+..+. .+|+.|++++|.++....
T Consensus 266 -----~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~~ 310 (336)
T 2ast_B 266 -----LELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTTIAR 310 (336)
T ss_dssp -----GGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCSCCTTC
T ss_pred -----HHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecccCccccC
Confidence 11244899999999999 4 3333332 346667788888877643
No 96
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.63 E-value=5.3e-16 Score=150.69 Aligned_cols=110 Identities=18% Similarity=0.169 Sum_probs=82.0
Q ss_pred CCCccEEEccCcccccccc-h--hhccCCCccEEEecCCCCCCcCcccc--CCCCCCCEEeccCCCCCc-cc----HHhh
Q 037847 227 CPRLVTLLLDGNRIEEITD-G--FFQSLSTLRVLSLRGNFPPSTLPSGI--SGLVSLHHLDLSSTDITG-LP----QELK 296 (542)
Q Consensus 227 ~~~L~~L~l~~~~~~~~~~-~--~~~~l~~L~~L~l~~~~~~~~lp~~i--~~l~~L~~L~l~~~~i~~-lp----~~i~ 296 (542)
...++.+.+.++.+....- . .+..+++|++|++++|......|..+ +.+.+|++|++++|.++. .| ..+.
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 3456777877775532110 0 02245679999999996566778777 899999999999998886 22 3456
Q ss_pred cCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCcccc
Q 037847 297 ALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRF 337 (542)
Q Consensus 297 ~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~ 337 (542)
.+++|++|++++| .+..++...++.+++|++|++++|.+.
T Consensus 143 ~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 182 (310)
T 4glp_A 143 LKPGLKVLSIAQA-HSPAFSCEQVRAFPALTSLDLSDNPGL 182 (310)
T ss_dssp BCSCCCEEEEECC-SSCCCCTTSCCCCTTCCEEECCSCTTC
T ss_pred hccCCCEEEeeCC-CcchhhHHHhccCCCCCEEECCCCCCc
Confidence 7999999999999 456666545889999999999999764
No 97
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.62 E-value=2.5e-15 Score=158.26 Aligned_cols=183 Identities=17% Similarity=0.239 Sum_probs=130.2
Q ss_pred EEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccCCCCCcccHHhhcCCCCCEEeccCCccc
Q 037847 233 LLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHL 312 (542)
Q Consensus 233 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~ 312 (542)
+.+..+.+..+.. +..+.+|+.|++++| .+..+| .++.+++|++|+|++|.+..+|. +..+++|++|++++| .+
T Consensus 26 l~l~~~~i~~~~~--~~~L~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l 99 (605)
T 1m9s_A 26 DNLKKKSVTDAVT--QNELNSIDQIIANNS-DIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDEN-KI 99 (605)
T ss_dssp HHTTCSCTTSEEC--HHHHTTCCCCBCTTC-CCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSS-CC
T ss_pred HhccCCCcccccc--hhcCCCCCEEECcCC-CCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCC-CC
Confidence 3344444444333 456677777777777 566666 57778888888888887777766 778888888888887 56
Q ss_pred CccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCCceeeeEecchHHHHHhhcCchhhccce
Q 037847 313 SIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQ 392 (542)
Q Consensus 313 ~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~l~ 392 (542)
..+|. +..+++|++|++++|.+.+
T Consensus 100 ~~l~~--l~~l~~L~~L~Ls~N~l~~------------------------------------------------------ 123 (605)
T 1m9s_A 100 KDLSS--LKDLKKLKSLSLEHNGISD------------------------------------------------------ 123 (605)
T ss_dssp CCCTT--STTCTTCCEEECTTSCCCC------------------------------------------------------
T ss_pred CCChh--hccCCCCCEEEecCCCCCC------------------------------------------------------
Confidence 66664 7778888888887776431
Q ss_pred eEEeccccCCCCCceecccccccccceeeecccCccceeeccchhhcccccccccccCEEEEccCCCCCcchhhhccCcc
Q 037847 393 SVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRGKDLTWLVFVQNLK 472 (542)
Q Consensus 393 ~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~~~~~~l~~l~~L~ 472 (542)
...+..+++|+.|+|++|.+..+ ..+ ..+++|+.|+|++|.+..++++..+++|+
T Consensus 124 ---------------l~~l~~l~~L~~L~Ls~N~l~~l--~~l--------~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~ 178 (605)
T 1m9s_A 124 ---------------INGLVHLPQLESLYLGNNKITDI--TVL--------SRLTKLDTLSLEDNQISDIVPLAGLTKLQ 178 (605)
T ss_dssp ---------------CGGGGGCTTCSEEECCSSCCCCC--GGG--------GSCTTCSEEECCSSCCCCCGGGTTCTTCC
T ss_pred ---------------CccccCCCccCEEECCCCccCCc--hhh--------cccCCCCEEECcCCcCCCchhhccCCCCC
Confidence 01123456777777777777653 112 34789999999999884444489999999
Q ss_pred eEEEeccchhhhcccccccccccccCCcCCCCCccceeecccCC
Q 037847 473 QLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGT 516 (542)
Q Consensus 473 ~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 516 (542)
.|+|++|.+.+++ ....+++|+.|++.+|+
T Consensus 179 ~L~Ls~N~i~~l~--------------~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 179 NLYLSKNHISDLR--------------ALAGLKNLDVLELFSQE 208 (605)
T ss_dssp EEECCSSCCCBCG--------------GGTTCTTCSEEECCSEE
T ss_pred EEECcCCCCCCCh--------------HHccCCCCCEEEccCCc
Confidence 9999999988763 45668999999999875
No 98
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.61 E-value=9.5e-17 Score=161.10 Aligned_cols=229 Identities=17% Similarity=0.139 Sum_probs=131.6
Q ss_pred cccccccchhhccCCCccEEEecCCCCCCc----CccccCCCCCCCEEeccCCCCCc----ccHHh-------hcCCCCC
Q 037847 238 NRIEEITDGFFQSLSTLRVLSLRGNFPPST----LPSGISGLVSLHHLDLSSTDITG----LPQEL-------KALEKLR 302 (542)
Q Consensus 238 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~----lp~~i~~l~~L~~L~l~~~~i~~----lp~~i-------~~l~~L~ 302 (542)
..+..+... +..+++|++|++++|..... ++..+..+++|++|++++|.+.. +|..+ .++++|+
T Consensus 19 ~~~~~l~~~-l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~ 97 (386)
T 2ca6_A 19 EDEKSVFAV-LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLH 97 (386)
T ss_dssp HHHHTTSHH-HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCC
T ss_pred HHHHHHHHH-HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCccc
Confidence 334444433 77889999999999943333 34457789999999999975553 45555 7899999
Q ss_pred EEeccCCcccC----ccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccc---------cCCceee
Q 037847 303 YLNLDYAFHLS----IIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGL---------KHLNVLS 369 (542)
Q Consensus 303 ~L~l~~~~~~~----~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L---------~~L~~l~ 369 (542)
+|++++|.... .+|.. +..+++|++|++++|.+....+ ......+..+ ++|+.|+
T Consensus 98 ~L~Ls~n~l~~~~~~~l~~~-l~~~~~L~~L~L~~n~l~~~~~-----------~~l~~~l~~l~~~~~~~~~~~L~~L~ 165 (386)
T 2ca6_A 98 TVRLSDNAFGPTAQEPLIDF-LSKHTPLEHLYLHNNGLGPQAG-----------AKIARALQELAVNKKAKNAPPLRSII 165 (386)
T ss_dssp EEECCSCCCCTTTHHHHHHH-HHHCTTCCEEECCSSCCHHHHH-----------HHHHHHHHHHHHHHHHHTCCCCCEEE
T ss_pred EEECCCCcCCHHHHHHHHHH-HHhCCCCCEEECcCCCCCHHHH-----------HHHHHHHHHHhhhhhcccCCCCcEEE
Confidence 99999995433 26665 7889999999999998742111 1122234444 7888888
Q ss_pred eEecchH--HHHHhhcCchhhccceeEEeccccCCCCCc--eec-ccccccccceeeecccCccceeeccchhhcccccc
Q 037847 370 WSFGSSL--AVQKFLKYPKLVSITQSVWVECGTYTRPPF--NVL-HLAYMENLQELELESCNLEEMKIDSTEEVKKLFRN 444 (542)
Q Consensus 370 ~~~~~~~--~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~--~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 444 (542)
++.+... ....+.......+.++.|.+.++....... ... .+..+++|++|++++|.+.......+. ....
T Consensus 166 L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~----~~l~ 241 (386)
T 2ca6_A 166 CGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA----IALK 241 (386)
T ss_dssp CCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH----HHGG
T ss_pred CCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHH----HHHc
Confidence 8876542 222222222223355566655543210000 011 344556666666666665320000000 0012
Q ss_pred cccccCEEEEccCCCCC------cchhhh--ccCcceEEEeccchhh
Q 037847 445 GFRNLNTVVLRSCRGKD------LTWLVF--VQNLKQLNMQGFTMEE 483 (542)
Q Consensus 445 ~l~~L~~L~L~~c~~~~------~~~l~~--l~~L~~L~L~~~~l~~ 483 (542)
.+++|++|+|++|.+.. +..+.. +++|++|+|++|.+..
T Consensus 242 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 242 SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp GCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred cCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence 35566666666666511 122322 5666666666666555
No 99
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.61 E-value=8.8e-16 Score=152.55 Aligned_cols=109 Identities=20% Similarity=0.184 Sum_probs=60.0
Q ss_pred CCccEEEccCcccccccc----hhhccCC-CccEEEecCCCCCCcCccccCCC-----CCCCEEeccCCCCCccc-HH--
Q 037847 228 PRLVTLLLDGNRIEEITD----GFFQSLS-TLRVLSLRGNFPPSTLPSGISGL-----VSLHHLDLSSTDITGLP-QE-- 294 (542)
Q Consensus 228 ~~L~~L~l~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~~lp~~i~~l-----~~L~~L~l~~~~i~~lp-~~-- 294 (542)
++|+.|++++|.+...+. ..+..++ +|++|++++|......+..++.+ .+|++|++++|.++..+ ..
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 101 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV 101 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence 346677777766665554 4455666 67777777763222334444443 66777777776666532 22
Q ss_pred --hhcC-CCCCEEeccCCcccCccchhh----cCC-CCCCcEEeccCcccc
Q 037847 295 --LKAL-EKLRYLNLDYAFHLSIIPHQL----ISC-FSKLEVLRLCGCGRF 337 (542)
Q Consensus 295 --i~~l-~~L~~L~l~~~~~~~~lp~~~----~~~-l~~L~~L~l~~~~~~ 337 (542)
+..+ ++|++|++++|. +...+... +.. .++|++|++++|.+.
T Consensus 102 ~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 151 (362)
T 3goz_A 102 KTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLG 151 (362)
T ss_dssp HHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred HHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCC
Confidence 3334 667777777663 33333211 222 246777777666553
No 100
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.60 E-value=1.2e-14 Score=136.44 Aligned_cols=169 Identities=24% Similarity=0.343 Sum_probs=139.0
Q ss_pred EEEecCcccccCCcccccccceEEEeecCCcCCCC--CCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCC
Q 037847 188 FLVRAGVKLTEAPKVEEWEGAKRISLTANGIGSLS--EIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPP 265 (542)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 265 (542)
.+...+..+..+|.... ..++.|++.++.+..++ .+.++++|++|++++|.+..+++..+..+++|++|++++| .+
T Consensus 18 ~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l 95 (251)
T 3m19_A 18 EVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN-QL 95 (251)
T ss_dssp EEECTTCCCSSCCSCCC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CC
T ss_pred EEecCCCCccccCCCCC-CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC-cc
Confidence 34445566666665333 68999999999998875 4889999999999999999988888999999999999999 55
Q ss_pred CcCc-cccCCCCCCCEEeccCCCCCcccHH-hhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCC
Q 037847 266 STLP-SGISGLVSLHHLDLSSTDITGLPQE-LKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGK 343 (542)
Q Consensus 266 ~~lp-~~i~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~ 343 (542)
..+| ..++.+.+|++|++++|.++.+|.. +..+++|++|++++| .+..+|...++.+++|++|++++|.+.+..+
T Consensus 96 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-- 172 (251)
T 3m19_A 96 ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH-- 172 (251)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCT--
T ss_pred cccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCCcCCccCH--
Confidence 5555 5678999999999999999998876 588999999999999 6778887668999999999999998764322
Q ss_pred CCccccCCCcchhHhhccccCCceeeeEecc
Q 037847 344 EGNVLCDGAEPLMKELLGLKHLNVLSWSFGS 374 (542)
Q Consensus 344 ~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~ 374 (542)
..+..+++|+.++++.+.
T Consensus 173 -------------~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 173 -------------GAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp -------------TTTTTCTTCCEEECCSCC
T ss_pred -------------HHHhCCCCCCEEEeeCCc
Confidence 235677888888887665
No 101
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.60 E-value=4.8e-15 Score=133.67 Aligned_cols=151 Identities=20% Similarity=0.233 Sum_probs=128.6
Q ss_pred cccccceEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEe
Q 037847 203 EEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLD 282 (542)
Q Consensus 203 ~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~ 282 (542)
..+.+++.+++.++.+..++.+..+++|++|++++|.+...+ .+..+++|++|++++|......|..++.+++|++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 456789999999999999888899999999999999776654 388999999999999944445788899999999999
Q ss_pred ccCCCCCc-ccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhcc
Q 037847 283 LSSTDITG-LPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLG 361 (542)
Q Consensus 283 l~~~~i~~-lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 361 (542)
+++|.++. .|..++.+++|++|++++|..+..+|. +..+++|++|++++|.+.. +..+..
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~~-----------------~~~l~~ 179 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHD-----------------YRGIED 179 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCCC-----------------CTTGGG
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCcC-----------------hHHhcc
Confidence 99999987 788899999999999999965888884 8999999999999998742 114678
Q ss_pred ccCCceeeeEecc
Q 037847 362 LKHLNVLSWSFGS 374 (542)
Q Consensus 362 L~~L~~l~~~~~~ 374 (542)
+++|+.|+++.+.
T Consensus 180 l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 180 FPKLNQLYAFSQT 192 (197)
T ss_dssp CSSCCEEEECBC-
T ss_pred CCCCCEEEeeCcc
Confidence 8889999888665
No 102
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.60 E-value=2.5e-16 Score=156.53 Aligned_cols=264 Identities=11% Similarity=0.059 Sum_probs=163.4
Q ss_pred EEccCcccccccchhhccCCCccEEEecCCCCCCcCc-----cccCCCC-CCCEEeccCCCCCcc-cHHhhcC-----CC
Q 037847 233 LLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLP-----SGISGLV-SLHHLDLSSTDITGL-PQELKAL-----EK 300 (542)
Q Consensus 233 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp-----~~i~~l~-~L~~L~l~~~~i~~l-p~~i~~l-----~~ 300 (542)
+.++.+.++...+.++...++|++|++++| .+...+ ..+..++ +|++|++++|.++.. +..+..+ ++
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 567788887777776777777999999999 566554 5677888 899999999999874 5556664 99
Q ss_pred CCEEeccCCcccCccchh---hcCCC-CCCcEEeccCccccccccCCCCccccCCCcchhHhhccc-cCCceeeeEecch
Q 037847 301 LRYLNLDYAFHLSIIPHQ---LISCF-SKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGL-KHLNVLSWSFGSS 375 (542)
Q Consensus 301 L~~L~l~~~~~~~~lp~~---~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L-~~L~~l~~~~~~~ 375 (542)
|++|++++|......+.. .+..+ ++|++|++++|.+.... .......+..+ ++|+.|+++.+..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~-----------~~~l~~~l~~~~~~L~~L~Ls~N~l 150 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKS-----------SSEFKQAFSNLPASITSLNLRGNDL 150 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSC-----------HHHHHHHHTTSCTTCCEEECTTSCG
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHH-----------HHHHHHHHHhCCCceeEEEccCCcC
Confidence 999999999533333332 13344 89999999999875321 11222334553 6899999987754
Q ss_pred H--HHHHhhcCch-hhccceeEEeccccCCCCCce-e-cccccc-cccceeeecccCccceeeccchhhccccccccccc
Q 037847 376 L--AVQKFLKYPK-LVSITQSVWVECGTYTRPPFN-V-LHLAYM-ENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNL 449 (542)
Q Consensus 376 ~--~~~~l~~~~~-~~~~l~~l~l~~~~~~~~~~~-~-~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L 449 (542)
. ....+..... ....++.|++.++..+..... . ..+..+ ++|++|++++|.+.......+.. ......++|
T Consensus 151 ~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~---~l~~~~~~L 227 (362)
T 3goz_A 151 GIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAY---IFSSIPNHV 227 (362)
T ss_dssp GGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHH---HHHHSCTTC
T ss_pred CHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHH---HHhcCCCCc
Confidence 3 1122222111 123678888877653221110 0 123334 58888888888876622211100 000113588
Q ss_pred CEEEEccCCCCCcc------hhhhccCcceEEEeccchhhhcccccccccccccCCcCCCCCccceeecccCC
Q 037847 450 NTVVLRSCRGKDLT------WLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGT 516 (542)
Q Consensus 450 ~~L~L~~c~~~~~~------~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 516 (542)
++|+|++|.+...+ .+..+++|++|+|++|.+..+..... ..+ ......+++|+.|++.++.
T Consensus 228 ~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~-~~l----~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 228 VSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQC-KAL----GAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp CEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHH-HHH----HTTSTTCCEEEEECTTSCB
T ss_pred eEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHH-HHH----HHHhccCCceEEEecCCCc
Confidence 88888888882221 23567888888888877544332100 000 1244567778888887754
No 103
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.58 E-value=2.1e-16 Score=168.09 Aligned_cols=84 Identities=10% Similarity=0.061 Sum_probs=51.7
Q ss_pred cccccCEEEEccCCC-CCcchhhh-ccCcceEEEeccchhhhcccccccccccccCCcCCCCCccceeecccCCcccccC
Q 037847 445 GFRNLNTVVLRSCRG-KDLTWLVF-VQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLKSVY 522 (542)
Q Consensus 445 ~l~~L~~L~L~~c~~-~~~~~l~~-l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 522 (542)
.+++|+.|+++++.. ..+..+.. +++|++|+|++|.+++.... .....+++|+.|++.+|+. ....
T Consensus 430 ~~~~L~~L~L~~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~-----------~l~~~~~~L~~L~L~~n~~-~~~~ 497 (594)
T 2p1m_B 430 HCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMH-----------HVLSGCDSLRKLEIRDCPF-GDKA 497 (594)
T ss_dssp HCTTCCEEECCSSCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHH-----------HHHHHCTTCCEEEEESCSC-CHHH
T ss_pred hCCCccEEeecCcccHHHHHHHHHhchhccEeeccCCCCcHHHHH-----------HHHhcCCCcCEEECcCCCC-cHHH
Confidence 356777777766222 33444444 77788888877766543221 0124478888888888875 3221
Q ss_pred --CCCCCCCCcceEeeccCC
Q 037847 523 --PNPQPFPKLKKIQAFHCR 540 (542)
Q Consensus 523 --~~~~~~p~L~~L~i~~C~ 540 (542)
.....+++|++|++++|+
T Consensus 498 ~~~~~~~l~~L~~L~l~~~~ 517 (594)
T 2p1m_B 498 LLANASKLETMRSLWMSSCS 517 (594)
T ss_dssp HHHTGGGGGGSSEEEEESSC
T ss_pred HHHHHHhCCCCCEEeeeCCC
Confidence 123457888888888886
No 104
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.58 E-value=3.5e-15 Score=141.02 Aligned_cols=98 Identities=23% Similarity=0.268 Sum_probs=48.6
Q ss_pred ccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccCCCCCcccHHhhcCCCCCEEeccCC
Q 037847 230 LVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYA 309 (542)
Q Consensus 230 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~ 309 (542)
+..+.+.++.++.++. +..+++|++|++++| .+..+| .++.+++|++|++++|.++.+|. +..+++|++|++++|
T Consensus 21 l~~l~l~~~~i~~~~~--~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N 95 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLVS--QKELSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRN 95 (263)
T ss_dssp HHHHHHTCSCTTSEEC--HHHHTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSS
T ss_pred HHHHHhcCCCcccccc--hhhcCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCC
Confidence 3334444444444332 444555555555555 444444 45555555555555555555544 555555555555555
Q ss_pred cccCccchhhcCCCCCCcEEeccCccc
Q 037847 310 FHLSIIPHQLISCFSKLEVLRLCGCGR 336 (542)
Q Consensus 310 ~~~~~lp~~~~~~l~~L~~L~l~~~~~ 336 (542)
.+..+|. +.. ++|++|++++|.+
T Consensus 96 -~l~~l~~--~~~-~~L~~L~L~~N~l 118 (263)
T 1xeu_A 96 -RLKNLNG--IPS-ACLSRLFLDNNEL 118 (263)
T ss_dssp -CCSCCTT--CCC-SSCCEEECCSSCC
T ss_pred -ccCCcCc--ccc-CcccEEEccCCcc
Confidence 3444443 222 5555555555543
No 105
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.58 E-value=1.4e-14 Score=143.02 Aligned_cols=233 Identities=18% Similarity=0.164 Sum_probs=170.9
Q ss_pred EecCcccccCCcccccccceEEEeecCCcCCCCC--CCCCCCccEEEccCccc-ccccchhhccCCCccEE-EecCCCCC
Q 037847 190 VRAGVKLTEAPKVEEWEGAKRISLTANGIGSLSE--IPTCPRLVTLLLDGNRI-EEITDGFFQSLSTLRVL-SLRGNFPP 265 (542)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~-~~~~~~~~~~l~~L~~L-~l~~~~~~ 265 (542)
.-.+.+++.+|.-. ..+++.|++++|.++.++. +.++++|++|++++|.+ +.++...|.++++++.+ .+.+| .+
T Consensus 15 ~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N-~l 92 (350)
T 4ay9_X 15 LCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN-NL 92 (350)
T ss_dssp EEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET-TC
T ss_pred EecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC-cc
Confidence 33455677777522 3689999999999999874 78999999999999987 45667778899888764 45555 66
Q ss_pred CcC-ccccCCCCCCCEEeccCCCCCcccHH-hhcCCCCCEEeccCCcccCccchhhcCCCC-CCcEEeccCccccccccC
Q 037847 266 STL-PSGISGLVSLHHLDLSSTDITGLPQE-LKALEKLRYLNLDYAFHLSIIPHQLISCFS-KLEVLRLCGCGRFGVIKG 342 (542)
Q Consensus 266 ~~l-p~~i~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~-~L~~L~l~~~~~~~~~~~ 342 (542)
..+ |..+..+++|++|++++|.++.+|.. .....++..|++.++..+..+|...+..+. .++.|++++|.+....+.
T Consensus 93 ~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~ 172 (350)
T 4ay9_X 93 LYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNS 172 (350)
T ss_dssp CEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTT
T ss_pred cccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChh
Confidence 666 56789999999999999999987653 456678889999887788888876566664 689999999987532111
Q ss_pred CCCccccCCCcchhHhhccccCCceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeee
Q 037847 343 KEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELEL 422 (542)
Q Consensus 343 ~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l 422 (542)
.....+|+.+.+..+ .. ........+..+++|+.|++
T Consensus 173 ----------------~f~~~~L~~l~l~~~--------------------------n~-l~~i~~~~f~~l~~L~~LdL 209 (350)
T 4ay9_X 173 ----------------AFNGTQLDELNLSDN--------------------------NN-LEELPNDVFHGASGPVILDI 209 (350)
T ss_dssp ----------------SSTTEEEEEEECTTC--------------------------TT-CCCCCTTTTTTEECCSEEEC
T ss_pred ----------------hccccchhHHhhccC--------------------------Cc-ccCCCHHHhccCcccchhhc
Confidence 111223333333211 10 11111234567899999999
Q ss_pred cccCccceeeccchhhcccccccccccCEEEEccCCC-CCcchhhhccCcceEEEec
Q 037847 423 ESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRG-KDLTWLVFVQNLKQLNMQG 478 (542)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~-~~~~~l~~l~~L~~L~L~~ 478 (542)
++|.+..++. ..+.+|++|.+.++.. ..+|.+..+++|+.+++.+
T Consensus 210 s~N~l~~lp~-----------~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 210 SRTRIHSLPS-----------YGLENLKKLRARSTYNLKKLPTLEKLVALMEASLTY 255 (350)
T ss_dssp TTSCCCCCCS-----------SSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSC
T ss_pred CCCCcCccCh-----------hhhccchHhhhccCCCcCcCCCchhCcChhhCcCCC
Confidence 9999987543 3378899999988877 7888899999999999976
No 106
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.57 E-value=4.4e-14 Score=147.13 Aligned_cols=114 Identities=27% Similarity=0.388 Sum_probs=89.9
Q ss_pred cceEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccCC
Q 037847 207 GAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSST 286 (542)
Q Consensus 207 ~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~ 286 (542)
+++.|++.++.+..+|... +++|++|++++|.++.++ ..+++|++|++++| .+..+|. ++. +|++|++++|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL-PPQITVLEITQNALISLP----ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECCSS
T ss_pred CccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcccc----cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECCCC
Confidence 6788888888888877522 378889999988888766 34688889999888 6666887 665 8889999888
Q ss_pred CCCcccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCcccc
Q 037847 287 DITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRF 337 (542)
Q Consensus 287 ~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~ 337 (542)
.++.+|. .+++|++|++++| .+..+|. .+++|++|++++|.+.
T Consensus 131 ~l~~lp~---~l~~L~~L~Ls~N-~l~~lp~----~l~~L~~L~Ls~N~L~ 173 (571)
T 3cvr_A 131 QLTMLPE---LPALLEYINADNN-QLTMLPE----LPTSLEVLSVRNNQLT 173 (571)
T ss_dssp CCSCCCC---CCTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSSCCS
T ss_pred cCCCCCC---cCccccEEeCCCC-ccCcCCC----cCCCcCEEECCCCCCC
Confidence 8888887 6888889998888 5666775 4678888888888764
No 107
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.56 E-value=3e-16 Score=166.85 Aligned_cols=252 Identities=15% Similarity=0.096 Sum_probs=133.8
Q ss_pred CCCccEEEecCCCCCCcCccccCCCCCCCEEeccCCC-------CCcccHHhhcCCCCCEE-eccCCcccCccchhhcCC
Q 037847 251 LSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTD-------ITGLPQELKALEKLRYL-NLDYAFHLSIIPHQLISC 322 (542)
Q Consensus 251 l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~-------i~~lp~~i~~l~~L~~L-~l~~~~~~~~lp~~~~~~ 322 (542)
+++|++|++++|.....+|..+..+++|++|+++.+. +..++..+.++++|+.| .+.+. ....+|.. +..
T Consensus 210 ~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~-~~~~l~~~-~~~ 287 (594)
T 2p1m_B 210 CPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDA-VPAYLPAV-YSV 287 (594)
T ss_dssp CTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTC-CGGGGGGG-HHH
T ss_pred CCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCccc-chhhHHHH-HHh
Confidence 4555555555543333344444445555555543331 12233444555555555 22222 12233332 345
Q ss_pred CCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCCceeeeEecchHHHHHhhcCchhhccceeEEecccc--
Q 037847 323 FSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGT-- 400 (542)
Q Consensus 323 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~-- 400 (542)
+++|++|++++|.+.. .....-+.++++|+.|++..+ .....+.......+.++.|.+..+.
T Consensus 288 ~~~L~~L~L~~~~l~~--------------~~l~~~~~~~~~L~~L~l~~~--~~~~~l~~l~~~~~~L~~L~L~~~~~~ 351 (594)
T 2p1m_B 288 CSRLTTLNLSYATVQS--------------YDLVKLLCQCPKLQRLWVLDY--IEDAGLEVLASTCKDLRELRVFPSEPF 351 (594)
T ss_dssp HTTCCEEECTTCCCCH--------------HHHHHHHTTCTTCCEEEEEGG--GHHHHHHHHHHHCTTCCEEEEECSCTT
T ss_pred hCCCCEEEccCCCCCH--------------HHHHHHHhcCCCcCEEeCcCc--cCHHHHHHHHHhCCCCCEEEEecCccc
Confidence 6778888887776321 112222557788888888865 2223333333334567788774421
Q ss_pred -----CCCCCceeccc-ccccccceeeecccCccceeeccchhhcccccccccccCEEEEc-----cCCC-CCcc-----
Q 037847 401 -----YTRPPFNVLHL-AYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLR-----SCRG-KDLT----- 463 (542)
Q Consensus 401 -----~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~-----~c~~-~~~~----- 463 (542)
..........+ ..+++|++|.+..+.+....+..+ ...+++|+.|+++ +|.. ...+
T Consensus 352 g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l-------~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~ 424 (594)
T 2p1m_B 352 VMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITI-------ARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGF 424 (594)
T ss_dssp CSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHH-------HHHCTTCCEEEEEESSTTCCCTTTCCCTHHHH
T ss_pred ccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHH-------HhhCCCcceeEeecccCCCcccccCCchhhHH
Confidence 00111111122 247888888776666654222111 1247899999998 3443 3221
Q ss_pred --hhhhccCcceEEEeccchhhhcccccccccccccCCcCCCCCccceeecccCCcccccCC-C-CCCCCCcceEeeccC
Q 037847 464 --WLVFVQNLKQLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLKSVYP-N-PQPFPKLKKIQAFHC 539 (542)
Q Consensus 464 --~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~-~-~~~~p~L~~L~i~~C 539 (542)
.+..+++|++|+|++ .+.+.... .....+++|+.|++.+|. +..... . ...+|+|++|++++|
T Consensus 425 ~~l~~~~~~L~~L~L~~-~l~~~~~~-----------~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n 491 (594)
T 2p1m_B 425 GAIVEHCKDLRRLSLSG-LLTDKVFE-----------YIGTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDC 491 (594)
T ss_dssp HHHHHHCTTCCEEECCS-SCCHHHHH-----------HHHHHCTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESC
T ss_pred HHHHhhCCCccEEeecC-cccHHHHH-----------HHHHhchhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCC
Confidence 155788999999977 44433210 011238899999999986 332111 1 134899999999999
Q ss_pred C
Q 037847 540 R 540 (542)
Q Consensus 540 ~ 540 (542)
+
T Consensus 492 ~ 492 (594)
T 2p1m_B 492 P 492 (594)
T ss_dssp S
T ss_pred C
Confidence 6
No 108
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.56 E-value=2.7e-14 Score=128.73 Aligned_cols=146 Identities=20% Similarity=0.246 Sum_probs=124.6
Q ss_pred EEEecCcccccCCcccccccceEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCc
Q 037847 188 FLVRAGVKLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPST 267 (542)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 267 (542)
.+...+..+..++.+..+.+++.|++.+|.+..++.+..+++|++|++++|.+....+..++.+++|++|++++|.....
T Consensus 48 ~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~ 127 (197)
T 4ezg_A 48 YITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDS 127 (197)
T ss_dssp EEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGG
T ss_pred EEeccCCCccChHHHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcH
Confidence 44445666777788888899999999999998888899999999999999999875555589999999999999954445
Q ss_pred CccccCCCCCCCEEeccCCC-CCcccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCcccc
Q 037847 268 LPSGISGLVSLHHLDLSSTD-ITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRF 337 (542)
Q Consensus 268 lp~~i~~l~~L~~L~l~~~~-i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~ 337 (542)
.|..++.+++|++|++++|. ++.+| .+..+++|++|++++| .+..++. +..+++|++|++++|.+.
T Consensus 128 ~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n-~i~~~~~--l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 128 ILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD-GVHDYRG--IEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp GHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB-CCCCCTT--GGGCSSCCEEEECBC---
T ss_pred hHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC-CCcChHH--hccCCCCCEEEeeCcccC
Confidence 78889999999999999997 88897 7999999999999999 5677773 889999999999998764
No 109
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.55 E-value=6.6e-14 Score=129.35 Aligned_cols=142 Identities=30% Similarity=0.364 Sum_probs=105.9
Q ss_pred CcccccCCcccccccceEEEeecCCcCCCC--CCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCcc
Q 037847 193 GVKLTEAPKVEEWEGAKRISLTANGIGSLS--EIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPS 270 (542)
Q Consensus 193 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~ 270 (542)
+..+..+|... ..+++.|++.+|.+..++ .+..+++|+.|++++|.+..+++..|..+++|++|++++| .+..+|.
T Consensus 28 ~~~l~~ip~~~-~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~ 105 (229)
T 3e6j_A 28 SKRHASVPAGI-PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN-QLTVLPS 105 (229)
T ss_dssp TSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT
T ss_pred CCCcCccCCCC-CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC-cCCccCh
Confidence 34445555422 267888888888887763 3677888888888888887777776778888888888888 5555554
Q ss_pred c-cCCCCCCCEEeccCCCCCcccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCcccc
Q 037847 271 G-ISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRF 337 (542)
Q Consensus 271 ~-i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~ 337 (542)
. +..+.+|++|++++|.++.+|..+..+++|++|++++| .+..+|...+..+++|++|++.+|.+.
T Consensus 106 ~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 106 AVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp TTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred hHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 3 57788888888888888888888888888888888887 566677655777888888888887654
No 110
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.55 E-value=2.4e-14 Score=130.30 Aligned_cols=125 Identities=27% Similarity=0.428 Sum_probs=86.4
Q ss_pred EEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccc-cCCCCCCCEEeccCCCC
Q 037847 210 RISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSG-ISGLVSLHHLDLSSTDI 288 (542)
Q Consensus 210 ~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~-i~~l~~L~~L~l~~~~i 288 (542)
.++..++.+..+|. .-.++|+.|++++|.++.+++..+..+++|++|++++| .+..+|.. +..+.+|++|++++|.+
T Consensus 11 ~v~c~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 11 TVECYSQGRTSVPT-GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQL 88 (208)
T ss_dssp EEECCSSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEecCCCccCCCC-CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCCcC
Confidence 45555566665553 22457788888888777777766777788888888877 45555543 56777888888888777
Q ss_pred CcccHH-hhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCcccc
Q 037847 289 TGLPQE-LKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRF 337 (542)
Q Consensus 289 ~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~ 337 (542)
+.+|.. +..+++|++|++++| .+..+|...+.++++|++|++++|.+.
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~ 137 (208)
T 2o6s_A 89 QSLPNGVFDKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQNQLK 137 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CccCHhHhcCccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCCCccc
Confidence 776654 567778888888777 555666555677777777777777654
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.54 E-value=3.9e-14 Score=133.80 Aligned_cols=154 Identities=25% Similarity=0.315 Sum_probs=131.1
Q ss_pred ccccCCcccccccceEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCC
Q 037847 195 KLTEAPKVEEWEGAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISG 274 (542)
Q Consensus 195 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~ 274 (542)
....++.+..+.+++.|++.++.+..++.+..+++|+.|++++|.++.+++ +..+++|++|++++| .+..+|. +..
T Consensus 30 ~i~~~~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N-~l~~l~~-~~~ 105 (263)
T 1xeu_A 30 SVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRN-RLKNLNG-IPS 105 (263)
T ss_dssp CTTSEECHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSS-CCSCCTT-CCC
T ss_pred CcccccchhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCC-ccCCcCc-ccc
Confidence 334445566778999999999999999988999999999999999988877 889999999999999 6777775 334
Q ss_pred CCCCCEEeccCCCCCcccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcc
Q 037847 275 LVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEP 354 (542)
Q Consensus 275 l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 354 (542)
.+|++|++++|.++.+| .+..+++|++|++++| .++.+|. ++.+++|++|++++|.+.+.
T Consensus 106 -~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N-~i~~~~~--l~~l~~L~~L~L~~N~i~~~--------------- 165 (263)
T 1xeu_A 106 -ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNN-KLKSIVM--LGFLSKLEVLDLHGNEITNT--------------- 165 (263)
T ss_dssp -SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTS-CCCBCGG--GGGCTTCCEEECTTSCCCBC---------------
T ss_pred -CcccEEEccCCccCCCh-hhcCcccccEEECCCC-cCCCChH--HccCCCCCEEECCCCcCcch---------------
Confidence 99999999999999986 5899999999999999 6777774 88999999999999987531
Q ss_pred hhHhhccccCCceeeeEecc
Q 037847 355 LMKELLGLKHLNVLSWSFGS 374 (542)
Q Consensus 355 ~~~~l~~L~~L~~l~~~~~~ 374 (542)
..+..+++|+.|+++.+.
T Consensus 166 --~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 166 --GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp --TTSTTCCCCCEEEEEEEE
T ss_pred --HHhccCCCCCEEeCCCCc
Confidence 446778889999988765
No 112
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.53 E-value=8.4e-14 Score=127.75 Aligned_cols=128 Identities=28% Similarity=0.382 Sum_probs=64.3
Q ss_pred ccceEEEeecCCcCCCC--CCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccc-cCCCCCCCEEe
Q 037847 206 EGAKRISLTANGIGSLS--EIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSG-ISGLVSLHHLD 282 (542)
Q Consensus 206 ~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~-i~~l~~L~~L~ 282 (542)
..++.|++.+|.+..++ .+..+++|+.|++++|.+..+.+..|..+++|++|++++| .+..+|.. +..+.+|++|+
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~ 110 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN-KITELPKSLFEGLFSLQLLL 110 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC-cCCccCHhHccCCCCCCEEE
Confidence 34555555555555443 2445555555555555555544444555555555555555 34444433 34455555555
Q ss_pred ccCCCCCcc-cHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCcc
Q 037847 283 LSSTDITGL-PQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCG 335 (542)
Q Consensus 283 l~~~~i~~l-p~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~ 335 (542)
+++|.++.+ |..+..+++|++|++++| .+..++...+..+++|++|++++|+
T Consensus 111 L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 111 LNANKINCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCCCEeCHHHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCCC
Confidence 555555553 334455555555555555 3444443334555555555555544
No 113
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.53 E-value=7.8e-14 Score=145.28 Aligned_cols=186 Identities=20% Similarity=0.201 Sum_probs=138.9
Q ss_pred CccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccCCCCCcccHHhhcCCCCCEEeccC
Q 037847 229 RLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDY 308 (542)
Q Consensus 229 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~ 308 (542)
+++.|++++|.++.+|... +++|++|++++| .+..+| +.+.+|++|++++|.++.+|. +.+ +|++|++++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l---~~~L~~L~Ls~N-~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL---PPQITVLEITQN-ALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC---CTTCSEEECCSS-CCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCS
T ss_pred CccEEEeCCCCCCccCHhH---cCCCCEEECcCC-CCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCC
Confidence 7899999999998877653 378999999999 677888 557899999999999999988 655 999999999
Q ss_pred CcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCCceeeeEecchHHHHHhhcCchhh
Q 037847 309 AFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLV 388 (542)
Q Consensus 309 ~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~l~~~~~~~ 388 (542)
| .+..+|. .+++|++|++++|.+.+ +|. .+++|+.|+++.+...
T Consensus 130 N-~l~~lp~----~l~~L~~L~Ls~N~l~~-lp~------------------~l~~L~~L~Ls~N~L~------------ 173 (571)
T 3cvr_A 130 N-QLTMLPE----LPALLEYINADNNQLTM-LPE------------------LPTSLEVLSVRNNQLT------------ 173 (571)
T ss_dssp S-CCSCCCC----CCTTCCEEECCSSCCSC-CCC------------------CCTTCCEEECCSSCCS------------
T ss_pred C-cCCCCCC----cCccccEEeCCCCccCc-CCC------------------cCCCcCEEECCCCCCC------------
Confidence 9 6667886 57899999999998753 221 3466777777654311
Q ss_pred ccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccchhhcccccccccccCEEEEccCCC-CCcchhhh
Q 037847 389 SITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRG-KDLTWLVF 467 (542)
Q Consensus 389 ~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~-~~~~~l~~ 467 (542)
..+ . +. ++|+.|++++|.+..++. +.. .+ ....+.|+.|+|++|.+ ..+..+..
T Consensus 174 --------------~lp--~--l~--~~L~~L~Ls~N~L~~lp~--~~~--~L-~~~~~~L~~L~Ls~N~l~~lp~~l~~ 228 (571)
T 3cvr_A 174 --------------FLP--E--LP--ESLEALDVSTNLLESLPA--VPV--RN-HHSEETEIFFRCRENRITHIPENILS 228 (571)
T ss_dssp --------------CCC--C--CC--TTCCEEECCSSCCSSCCC--CC-----------CCEEEECCSSCCCCCCGGGGG
T ss_pred --------------Ccc--h--hh--CCCCEEECcCCCCCchhh--HHH--hh-hcccccceEEecCCCcceecCHHHhc
Confidence 001 1 22 799999999999887543 210 00 01123339999999999 66666888
Q ss_pred ccCcceEEEeccchhhhc
Q 037847 468 VQNLKQLNMQGFTMEEII 485 (542)
Q Consensus 468 l~~L~~L~L~~~~l~~~~ 485 (542)
+++|+.|+|++|.+....
T Consensus 229 l~~L~~L~L~~N~l~~~~ 246 (571)
T 3cvr_A 229 LDPTCTIILEDNPLSSRI 246 (571)
T ss_dssp SCTTEEEECCSSSCCHHH
T ss_pred CCCCCEEEeeCCcCCCcC
Confidence 999999999999887654
No 114
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.51 E-value=1.2e-13 Score=126.76 Aligned_cols=149 Identities=21% Similarity=0.296 Sum_probs=122.6
Q ss_pred eEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccCCCC
Q 037847 209 KRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDI 288 (542)
Q Consensus 209 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~i 288 (542)
+.++..++.+..+|... .++++.|++++|.++.+++..|..+++|++|++++|......|..|..+.+|++|++++|.+
T Consensus 14 ~~v~c~~~~l~~iP~~l-~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNL-PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp TEEECTTSCCSSCCSSC-CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred CEEEcCCCCcCcCCCcc-CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 46778888888887522 27899999999999999887799999999999999943334488899999999999999999
Q ss_pred CcccHH-hhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCCce
Q 037847 289 TGLPQE-LKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNV 367 (542)
Q Consensus 289 ~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~ 367 (542)
+.+|.. +..+++|++|++++| .+..++...+..+++|++|++++|.+.+..+ ..+..+++|+.
T Consensus 93 ~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---------------~~~~~l~~L~~ 156 (220)
T 2v9t_B 93 TELPKSLFEGLFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDNKLQTIAK---------------GTFSPLRAIQT 156 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCT---------------TTTTTCTTCCE
T ss_pred CccCHhHccCCCCCCEEECCCC-CCCEeCHHHcCCCCCCCEEECCCCcCCEECH---------------HHHhCCCCCCE
Confidence 999876 578999999999999 5666655558999999999999998864322 23566788888
Q ss_pred eeeEecc
Q 037847 368 LSWSFGS 374 (542)
Q Consensus 368 l~~~~~~ 374 (542)
++++.+.
T Consensus 157 L~L~~N~ 163 (220)
T 2v9t_B 157 MHLAQNP 163 (220)
T ss_dssp EECCSSC
T ss_pred EEeCCCC
Confidence 8887654
No 115
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.50 E-value=3.5e-13 Score=122.54 Aligned_cols=142 Identities=25% Similarity=0.400 Sum_probs=120.5
Q ss_pred CcccccCCcccccccceEEEeecCCcCCCCC--CCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCcc
Q 037847 193 GVKLTEAPKVEEWEGAKRISLTANGIGSLSE--IPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPS 270 (542)
Q Consensus 193 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~ 270 (542)
+.....+|.. ...+++.|++.++.+..++. +..+++|++|++++|.++.+++..+..+++|++|++++| .+..+|.
T Consensus 16 ~~~l~~~p~~-~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~ 93 (208)
T 2o6s_A 16 SQGRTSVPTG-IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN-QLQSLPN 93 (208)
T ss_dssp SSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT
T ss_pred CCCccCCCCC-CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC-cCCccCH
Confidence 3444555532 23689999999999998864 789999999999999999988887899999999999999 5666665
Q ss_pred c-cCCCCCCCEEeccCCCCCcccHH-hhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCcccc
Q 037847 271 G-ISGLVSLHHLDLSSTDITGLPQE-LKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRF 337 (542)
Q Consensus 271 ~-i~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~ 337 (542)
. ++.+.+|++|++++|.++.+|.. +.++++|++|++++| .+..+|...+..+++|++|++++|.+.
T Consensus 94 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 94 GVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPWD 161 (208)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred hHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCCee
Confidence 4 68999999999999999998765 689999999999999 667777766889999999999999764
No 116
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.49 E-value=2.1e-13 Score=125.03 Aligned_cols=125 Identities=18% Similarity=0.300 Sum_probs=63.9
Q ss_pred EEEeecCCcCCCCCCCCCCCccEEEccCccccccc-chhhccCCCccEEEecCCCCCCcCcc-ccCCCCCCCEEeccCCC
Q 037847 210 RISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEIT-DGFFQSLSTLRVLSLRGNFPPSTLPS-GISGLVSLHHLDLSSTD 287 (542)
Q Consensus 210 ~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~lp~-~i~~l~~L~~L~l~~~~ 287 (542)
.+++.++.+..+|.. -...++.|++++|.++.++ ...|..+++|++|++++| .+..++. .|+.+.+|++|++++|.
T Consensus 15 ~l~~s~n~l~~iP~~-~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 15 TVDCSNQKLNKIPEH-IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp EEECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EeEeCCCCcccCccC-CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCCCc
Confidence 455555555555431 1233455555555555542 233555555666666555 3333332 45555556666665555
Q ss_pred CCcccHH-hhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCcccc
Q 037847 288 ITGLPQE-LKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRF 337 (542)
Q Consensus 288 i~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~ 337 (542)
++.+|.. +..+++|++|++++| .+..++...+..+++|++|++++|.+.
T Consensus 93 l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~ 142 (220)
T 2v70_A 93 LENVQHKMFKGLESLKTLMLRSN-RITCVGNDSFIGLSSVRLLSLYDNQIT 142 (220)
T ss_dssp CCCCCGGGGTTCSSCCEEECTTS-CCCCBCTTSSTTCTTCSEEECTTSCCC
T ss_pred cCccCHhHhcCCcCCCEEECCCC-cCCeECHhHcCCCccCCEEECCCCcCC
Confidence 5554432 555556666666555 333332223555555666666555554
No 117
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.47 E-value=4.3e-13 Score=122.96 Aligned_cols=146 Identities=22% Similarity=0.274 Sum_probs=121.3
Q ss_pred EEecCcccccCCcccccccceEEEeecCCcCCCCC---CCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCC
Q 037847 189 LVRAGVKLTEAPKVEEWEGAKRISLTANGIGSLSE---IPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPP 265 (542)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 265 (542)
+...+..+..+|... ...++.|++.+|.+..++. +..+++|+.|++++|.++.+++..|..+++|++|++++| .+
T Consensus 16 l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N-~l 93 (220)
T 2v70_A 16 VDCSNQKLNKIPEHI-PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN-RL 93 (220)
T ss_dssp EECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CC
T ss_pred eEeCCCCcccCccCC-CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC-cc
Confidence 344455666666422 3567899999999998732 678999999999999999998877999999999999999 55
Q ss_pred CcCc-cccCCCCCCCEEeccCCCCCcc-cHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCcccc
Q 037847 266 STLP-SGISGLVSLHHLDLSSTDITGL-PQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRF 337 (542)
Q Consensus 266 ~~lp-~~i~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~ 337 (542)
..+| ..++.+.+|++|++++|.++.+ |..+..+++|++|++++| .+..++...+..+++|++|++++|.+.
T Consensus 94 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 94 ENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 5554 4589999999999999999997 677899999999999999 566664445899999999999999864
No 118
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.46 E-value=5.8e-13 Score=122.95 Aligned_cols=148 Identities=23% Similarity=0.250 Sum_probs=123.2
Q ss_pred ceEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCcc-ccCCCCCCCEEeccCC
Q 037847 208 AKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPS-GISGLVSLHHLDLSST 286 (542)
Q Consensus 208 l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~-~i~~l~~L~~L~l~~~ 286 (542)
.+.++..++.+..+|.. -.++|++|++++|.+..+++..+..+++|++|++++| .+..+|. .+..+.+|++|++++|
T Consensus 21 ~~~v~c~~~~l~~ip~~-~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAG-IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEeEccCCCcCccCCC-CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCC
Confidence 34678888888888752 2389999999999999988888999999999999999 5677764 4689999999999999
Q ss_pred CCCcccHH-hhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCC
Q 037847 287 DITGLPQE-LKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHL 365 (542)
Q Consensus 287 ~i~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 365 (542)
.++.+|.. +..+++|++|++++| .+..+|.. +..+++|++|++++|.+.+..+ ..+..+++|
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp~~-~~~l~~L~~L~L~~N~l~~~~~---------------~~~~~l~~L 161 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCN-KLTELPRG-IERLTHLTHLALDQNQLKSIPH---------------GAFDRLSSL 161 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSS-CCCSCCTT-GGGCTTCSEEECCSSCCCCCCT---------------TTTTTCTTC
T ss_pred cCCccChhHhCcchhhCeEeccCC-cccccCcc-cccCCCCCEEECCCCcCCccCH---------------HHHhCCCCC
Confidence 99998765 588999999999999 67789987 7999999999999998763211 235677888
Q ss_pred ceeeeEecc
Q 037847 366 NVLSWSFGS 374 (542)
Q Consensus 366 ~~l~~~~~~ 374 (542)
+.+++..+.
T Consensus 162 ~~L~l~~N~ 170 (229)
T 3e6j_A 162 THAYLFGNP 170 (229)
T ss_dssp CEEECTTSC
T ss_pred CEEEeeCCC
Confidence 888887554
No 119
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.45 E-value=3.4e-13 Score=133.67 Aligned_cols=125 Identities=19% Similarity=0.212 Sum_probs=61.1
Q ss_pred EEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhc-cCCCccEEEecCCCCCCcCc-cccCCCCCCCEEeccCCC
Q 037847 210 RISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQ-SLSTLRVLSLRGNFPPSTLP-SGISGLVSLHHLDLSSTD 287 (542)
Q Consensus 210 ~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~lp-~~i~~l~~L~~L~l~~~~ 287 (542)
.++..++.+..+|.. -.+.++.|++++|.++.+++..+. .+++|++|++++| .+..++ ..|..+.+|++|++++|.
T Consensus 22 ~l~c~~~~l~~iP~~-~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 22 ILSCSKQQLPNVPQS-LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp EEECCSSCCSSCCSS-CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCcCccCcc-CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCCc
Confidence 444555555544431 123355555555555555444444 5555555555555 333333 335555555555555555
Q ss_pred CCcccH-HhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCcccc
Q 037847 288 ITGLPQ-ELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRF 337 (542)
Q Consensus 288 i~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~ 337 (542)
++.+|. .+..+++|++|++++| .+..++...+..+++|++|++++|.+.
T Consensus 100 l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~L~~N~l~ 149 (361)
T 2xot_A 100 LHTLDEFLFSDLQALEVLLLYNN-HIVVVDRNAFEDMAQLQKLYLSQNQIS 149 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CCcCCHHHhCCCcCCCEEECCCC-cccEECHHHhCCcccCCEEECCCCcCC
Confidence 555433 2455555555555555 333333323555555555555555443
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.44 E-value=3e-13 Score=118.50 Aligned_cols=129 Identities=19% Similarity=0.188 Sum_probs=92.2
Q ss_pred ccceEEEeecCCcC--CCCC-CCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEe
Q 037847 206 EGAKRISLTANGIG--SLSE-IPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLD 282 (542)
Q Consensus 206 ~~l~~l~l~~~~~~--~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~ 282 (542)
.+++.|++.++.+. .+|. +..+++|+.|++++|.++.+ ..+..+++|++|++++|.....+|..++.+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 56777888888776 5654 36777888888888877666 3377778888888888833333666666678888888
Q ss_pred ccCCCCCccc--HHhhcCCCCCEEeccCCcccCccch---hhcCCCCCCcEEeccCcccc
Q 037847 283 LSSTDITGLP--QELKALEKLRYLNLDYAFHLSIIPH---QLISCFSKLEVLRLCGCGRF 337 (542)
Q Consensus 283 l~~~~i~~lp--~~i~~l~~L~~L~l~~~~~~~~lp~---~~~~~l~~L~~L~l~~~~~~ 337 (542)
+++|.++.+| ..+..+++|++|++++| .+..+|. ..+..+++|++|++++|...
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 8888777765 56777888888888887 4555554 34777788888888777654
No 121
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.43 E-value=1.7e-13 Score=120.95 Aligned_cols=136 Identities=18% Similarity=0.168 Sum_probs=77.7
Q ss_pred CCCCCCccEEEccCcccccccchhhccC-CCccEEEecCCCCCCcCccccCCCCCCCEEeccCCCCCcccHHh-hcCCCC
Q 037847 224 IPTCPRLVTLLLDGNRIEEITDGFFQSL-STLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQEL-KALEKL 301 (542)
Q Consensus 224 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i-~~l~~L 301 (542)
+.++++|+.|++++|.++.++. +..+ ++|++|++++| .+..+ ..++.+++|++|++++|.++.+|..+ +.+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~--~~~~~~~L~~L~Ls~N-~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIEN--LGATLDQFDAIDFSDN-EIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCC--GGGGTTCCSEEECCSS-CCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCchhHH--hhhcCCCCCEEECCCC-CCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 4455566666666666655432 3333 36666666666 45544 35666666666666666666665444 666666
Q ss_pred CEEeccCCcccCccch-hhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCCceeeeEecchH
Q 037847 302 RYLNLDYAFHLSIIPH-QLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSL 376 (542)
Q Consensus 302 ~~L~l~~~~~~~~lp~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~ 376 (542)
++|++++| .+..+|. ..+..+++|++|++++|.+... .......+..+++|+.++++.+...
T Consensus 91 ~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~------------~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 91 TELILTNN-SLVELGDLDPLASLKSLTYLCILRNPVTNK------------KHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSGGGGS------------TTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCCCCCc------------HhHHHHHHHHCCccceeCCCcCCHH
Confidence 67766666 4455554 1255666667777666665421 1111223556666666666665543
No 122
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.42 E-value=1e-12 Score=130.30 Aligned_cols=147 Identities=26% Similarity=0.299 Sum_probs=122.4
Q ss_pred EEecCcccccCCcccccccceEEEeecCCcCCCCC--CC-CCCCccEEEccCcccccccchhhccCCCccEEEecCCCCC
Q 037847 189 LVRAGVKLTEAPKVEEWEGAKRISLTANGIGSLSE--IP-TCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPP 265 (542)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~--~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 265 (542)
+...+..+..+|... ...++.|++++|.+..++. +. ++++|+.|++++|.+..+++..|..+++|++|+|++| .+
T Consensus 23 l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N-~l 100 (361)
T 2xot_A 23 LSCSKQQLPNVPQSL-PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN-HL 100 (361)
T ss_dssp EECCSSCCSSCCSSC-CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CC
T ss_pred EEeCCCCcCccCccC-CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC-cC
Confidence 344455666666532 3568999999999998753 55 8999999999999999998888999999999999999 56
Q ss_pred CcCcc-ccCCCCCCCEEeccCCCCCcc-cHHhhcCCCCCEEeccCCcccCccchhhc---CCCCCCcEEeccCccccc
Q 037847 266 STLPS-GISGLVSLHHLDLSSTDITGL-PQELKALEKLRYLNLDYAFHLSIIPHQLI---SCFSKLEVLRLCGCGRFG 338 (542)
Q Consensus 266 ~~lp~-~i~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~~~~~lp~~~~---~~l~~L~~L~l~~~~~~~ 338 (542)
..+|. .|..+.+|++|++++|.++.+ |..+..+++|++|++++| .+..+|...+ ..+++|++|++++|.+..
T Consensus 101 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 101 HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 66654 588999999999999999986 667999999999999999 7788888755 679999999999998753
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.41 E-value=4.4e-13 Score=114.82 Aligned_cols=123 Identities=23% Similarity=0.244 Sum_probs=54.7
Q ss_pred ccceEEEeecCCcC--CCCC-CCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEe
Q 037847 206 EGAKRISLTANGIG--SLSE-IPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLD 282 (542)
Q Consensus 206 ~~l~~l~l~~~~~~--~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~ 282 (542)
.+++.+++.++.+. .+|. +..+++|+.|++++|.++.. ..++.+++|++|++++|.....+|..++.+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 34455555555544 3332 24445555555555544443 2244444555555555422112444444444455555
Q ss_pred ccCCCCCccc--HHhhcCCCCCEEeccCCcccCccch---hhcCCCCCCcEEec
Q 037847 283 LSSTDITGLP--QELKALEKLRYLNLDYAFHLSIIPH---QLISCFSKLEVLRL 331 (542)
Q Consensus 283 l~~~~i~~lp--~~i~~l~~L~~L~l~~~~~~~~lp~---~~~~~l~~L~~L~l 331 (542)
+++|.++.+| ..++.+++|++|++++| .+..+|. ..++.+++|++|++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETT
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccC
Confidence 5554444432 34444445555555444 2333332 22444444444443
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.41 E-value=2e-12 Score=113.13 Aligned_cols=133 Identities=24% Similarity=0.210 Sum_probs=109.9
Q ss_pred CCCCccEEEccCcccc--cccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccCCCCCc-ccHHhhcCCCCC
Q 037847 226 TCPRLVTLLLDGNRIE--EITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITG-LPQELKALEKLR 302 (542)
Q Consensus 226 ~~~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~-lp~~i~~l~~L~ 302 (542)
..++|+.|++++|.+. .++.. +..+++|++|++++| .+..+ ..++.+++|++|++++|.++. +|..+.++++|+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINV-GLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESS-CCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred CcccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCC-CCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence 4578999999999987 56554 789999999999999 57766 689999999999999999998 888888899999
Q ss_pred EEeccCCcccCccch-hhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCCceeeeEecc
Q 037847 303 YLNLDYAFHLSIIPH-QLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGS 374 (542)
Q Consensus 303 ~L~l~~~~~~~~lp~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~ 374 (542)
+|++++| .+..+|. ..+..+++|++|++++|.+.+. .......+..+++|+.|+++.+.
T Consensus 99 ~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~------------~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 99 HLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCEVTNL------------NDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp EEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSGGGTS------------TTHHHHHHTTCSSCCEETTEETT
T ss_pred EEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCcCcch------------HHHHHHHHHhCccCcEecCCCCC
Confidence 9999999 6777662 3389999999999999987532 11122457788899999888665
No 125
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.38 E-value=4.3e-12 Score=112.09 Aligned_cols=128 Identities=25% Similarity=0.393 Sum_probs=108.8
Q ss_pred ceEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccc-cCCCCCCCEEeccCC
Q 037847 208 AKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSG-ISGLVSLHHLDLSST 286 (542)
Q Consensus 208 l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~-i~~l~~L~~L~l~~~ 286 (542)
.+.+++.++.+..+|. .-.++|+.|++++|.+..+++..+..+++|++|++++| .+..+|.. ++.+.+|++|++++|
T Consensus 9 ~~~l~~~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCC
Confidence 3567888888888773 23478999999999999888887899999999999999 56666654 689999999999999
Q ss_pred CCCcccHH-hhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccc
Q 037847 287 DITGLPQE-LKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFG 338 (542)
Q Consensus 287 ~i~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~ 338 (542)
.++.+|.. +..+++|++|++++| .+..+|...+..+++|++|++++|.+..
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCCeec
Confidence 99998765 688999999999999 6778888767889999999999998753
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.38 E-value=1.4e-12 Score=111.62 Aligned_cols=129 Identities=20% Similarity=0.256 Sum_probs=104.7
Q ss_pred CCCCccEEEccCcccc--cccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccCCCCCc-ccHHhhcCCCCC
Q 037847 226 TCPRLVTLLLDGNRIE--EITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITG-LPQELKALEKLR 302 (542)
Q Consensus 226 ~~~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~-lp~~i~~l~~L~ 302 (542)
..++++.|++++|.+. .++. .+..+++|++|++++| .+..+ ..++.+++|++|++++|.++. +|..++.+++|+
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEG-LTDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCS-CCTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred CCccCeEEEccCCcCChhHHHH-HHhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence 4578999999999987 5554 4789999999999999 66666 689999999999999999998 888888899999
Q ss_pred EEeccCCcccCccc--hhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCCceeeeE
Q 037847 303 YLNLDYAFHLSIIP--HQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWS 371 (542)
Q Consensus 303 ~L~l~~~~~~~~lp--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~ 371 (542)
+|++++| .+..+| .. ++.+++|++|++++|.+.+. .......+..+++|+.|+++
T Consensus 92 ~L~ls~N-~i~~~~~~~~-~~~l~~L~~L~l~~N~l~~~------------~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 92 HLNLSGN-KIKDLSTIEP-LKKLENLKSLDLFNCEVTNL------------NDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EEECTTS-CCCSHHHHGG-GGGCTTCCEEECTTCGGGGS------------TTHHHHHHHHCTTCCEETTB
T ss_pred EEECCCC-cCCChHHHHH-HhhCCCCCEEeCcCCcccch------------HHHHHHHHHHCCCcccccCC
Confidence 9999999 566654 44 88999999999999987532 11112346677778777653
No 127
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.38 E-value=9.7e-13 Score=116.13 Aligned_cols=135 Identities=19% Similarity=0.238 Sum_probs=116.2
Q ss_pred CCcccccccceEEEeecCCcCCCCCCCCCC-CccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCcccc-CCCC
Q 037847 199 APKVEEWEGAKRISLTANGIGSLSEIPTCP-RLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGI-SGLV 276 (542)
Q Consensus 199 ~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i-~~l~ 276 (542)
.+......+++.|++.+|.+..++.+..+. +|+.|++++|.++.+. .+..+++|++|++++| .+..+|..+ +.++
T Consensus 12 ~~~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~--~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~ 88 (176)
T 1a9n_A 12 AAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD--GFPLLRRLKTLLVNNN-RICRIGEGLDQALP 88 (176)
T ss_dssp SCEEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC--CCCCCSSCCEEECCSS-CCCEECSCHHHHCT
T ss_pred HHhcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCccc--ccccCCCCCEEECCCC-cccccCcchhhcCC
Confidence 345566788999999999999988777766 9999999999998873 3889999999999999 677777655 8999
Q ss_pred CCCEEeccCCCCCcccH--HhhcCCCCCEEeccCCcccCccchh---hcCCCCCCcEEeccCcccc
Q 037847 277 SLHHLDLSSTDITGLPQ--ELKALEKLRYLNLDYAFHLSIIPHQ---LISCFSKLEVLRLCGCGRF 337 (542)
Q Consensus 277 ~L~~L~l~~~~i~~lp~--~i~~l~~L~~L~l~~~~~~~~lp~~---~~~~l~~L~~L~l~~~~~~ 337 (542)
+|++|++++|.++.+|. .+..+++|++|++++| .+..+|.. ++..+++|+.|++++|...
T Consensus 89 ~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 89 DLTELILTNNSLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp TCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 99999999999999987 8999999999999999 56677764 4788999999999988653
No 128
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.37 E-value=4e-12 Score=113.84 Aligned_cols=128 Identities=21% Similarity=0.287 Sum_probs=106.1
Q ss_pred eEEEeecCCcCCCCCCCCCCCccEEEccCcccccccch-hhccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccCCC
Q 037847 209 KRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDG-FFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTD 287 (542)
Q Consensus 209 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~ 287 (542)
+.++++++.+..+|... ..+++.|++++|.+..+++. .+..+++|++|++++|......|..++.+.+|++|++++|.
T Consensus 11 ~~l~~s~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CEEEcCCCCcCcCccCC-CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 67889999998887622 34899999999999888764 58899999999999994444447889999999999999999
Q ss_pred CCcccHH-hhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccc
Q 037847 288 ITGLPQE-LKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFG 338 (542)
Q Consensus 288 i~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~ 338 (542)
++.++.. +..+++|++|++++| .+..++...+..+++|++|++++|.+..
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 90 IKEISNKMFLGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CCEECSSSSTTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CCccCHHHhcCCCCCCEEECCCC-cCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 9997654 889999999999999 5555543348999999999999998753
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.36 E-value=7.9e-12 Score=111.90 Aligned_cols=125 Identities=23% Similarity=0.341 Sum_probs=105.1
Q ss_pred eEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCc-cccCCCCCCCEEeccCCC
Q 037847 209 KRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLP-SGISGLVSLHHLDLSSTD 287 (542)
Q Consensus 209 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp-~~i~~l~~L~~L~l~~~~ 287 (542)
+.+++.++.+..+|.. -.++++.|++++|.++.++. .+..+++|++|++++| .+..++ ..|..+.+|++|++++|.
T Consensus 13 ~~l~~~~~~l~~ip~~-~~~~l~~L~L~~n~i~~ip~-~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKG-IPRDVTELYLDGNQFTLVPK-ELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSC-CCTTCCEEECCSSCCCSCCG-GGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCC-CCCCCCEEECCCCcCchhHH-HhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCCc
Confidence 4678888888888752 23689999999999988774 5899999999999999 555554 568999999999999999
Q ss_pred CCcccH-HhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCcccc
Q 037847 288 ITGLPQ-ELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRF 337 (542)
Q Consensus 288 i~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~ 337 (542)
++.+|. .+..+++|++|++++| .+..+|...+..+++|++|++.+|++.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCEeCHHHhCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCCCee
Confidence 999765 5889999999999999 677888776889999999999988753
No 130
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.28 E-value=3.8e-12 Score=137.43 Aligned_cols=115 Identities=25% Similarity=0.277 Sum_probs=86.7
Q ss_pred CCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccCCCCCcccHHhhcCCCCCE
Q 037847 224 IPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRY 303 (542)
Q Consensus 224 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~ 303 (542)
+..+++|+.|++++|.+..++.. +..+++|++|+|++| .+..+|..|+.+.+|++|+|++|.++.+|..+++|++|++
T Consensus 220 ~~~l~~L~~L~Ls~n~l~~l~~~-~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~ 297 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIFNISAN-IFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKY 297 (727)
T ss_dssp --CCCCCCEEECTTSCCSCCCGG-GGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSE
T ss_pred hccCCCCcEEECCCCCCCCCChh-hcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCE
Confidence 56677788888888877776665 447788888888888 5667787788888888888888888888888888888888
Q ss_pred EeccCCcccCccchhhcCCCCCCcEEeccCccccccccC
Q 037847 304 LNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKG 342 (542)
Q Consensus 304 L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~ 342 (542)
|+|++| .++.+|.. ++++++|++|++++|.+.+.+|.
T Consensus 298 L~L~~N-~l~~lp~~-~~~l~~L~~L~L~~N~l~~~~p~ 334 (727)
T 4b8c_D 298 FYFFDN-MVTTLPWE-FGNLCNLQFLGVEGNPLEKQFLK 334 (727)
T ss_dssp EECCSS-CCCCCCSS-TTSCTTCCCEECTTSCCCSHHHH
T ss_pred EECCCC-CCCccChh-hhcCCCccEEeCCCCccCCCChH
Confidence 888887 56677776 77788888888888877665543
No 131
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.28 E-value=1.3e-11 Score=129.20 Aligned_cols=102 Identities=21% Similarity=0.255 Sum_probs=55.4
Q ss_pred ccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccCCCCCcccHHhhcCCCCCEEeccCC
Q 037847 230 LVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNLDYA 309 (542)
Q Consensus 230 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~ 309 (542)
|+.|++++|.++.+|. ++.+++|++|++++| .+..+|..++.+++|++|++++|.++.+| .++.+++|++|++++|
T Consensus 443 L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 443 VRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNN 518 (567)
T ss_dssp CSEEECTTSCCSSCCC--GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSS
T ss_pred ceEEEecCCCCCCCcC--ccccccCcEeecCcc-cccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCC
Confidence 4555555555555443 555555555555555 44455555555555555555555555555 5555555555555555
Q ss_pred cccCcc--chhhcCCCCCCcEEeccCcccc
Q 037847 310 FHLSII--PHQLISCFSKLEVLRLCGCGRF 337 (542)
Q Consensus 310 ~~~~~l--p~~~~~~l~~L~~L~l~~~~~~ 337 (542)
.+..+ |.. ++.+++|++|++++|.+.
T Consensus 519 -~l~~~~~p~~-l~~l~~L~~L~L~~N~l~ 546 (567)
T 1dce_A 519 -RLQQSAAIQP-LVSCPRLVLLNLQGNSLC 546 (567)
T ss_dssp -CCCSSSTTGG-GGGCTTCCEEECTTSGGG
T ss_pred -CCCCCCCcHH-HhcCCCCCEEEecCCcCC
Confidence 33333 433 555555555555555544
No 132
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.26 E-value=1.5e-11 Score=128.76 Aligned_cols=121 Identities=20% Similarity=0.244 Sum_probs=106.3
Q ss_pred cceEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccCC
Q 037847 207 GAKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSST 286 (542)
Q Consensus 207 ~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~ 286 (542)
.++.|++++|.+..+|.+..+++|+.|++++|.++.+|.. ++.+++|++|++++| .+..+| .++.+++|++|++++|
T Consensus 442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~Ls~N-~l~~lp-~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCNN 518 (567)
T ss_dssp TCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGG-GGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCSS
T ss_pred CceEEEecCCCCCCCcCccccccCcEeecCcccccccchh-hhcCCCCCEEECCCC-CCCCCc-ccCCCCCCcEEECCCC
Confidence 5789999999999999999999999999999999987765 899999999999999 677888 8999999999999999
Q ss_pred CCCcc--cHHhhcCCCCCEEeccCCcccCccchh---hcCCCCCCcEEec
Q 037847 287 DITGL--PQELKALEKLRYLNLDYAFHLSIIPHQ---LISCFSKLEVLRL 331 (542)
Q Consensus 287 ~i~~l--p~~i~~l~~L~~L~l~~~~~~~~lp~~---~~~~l~~L~~L~l 331 (542)
.++.+ |..++.+++|++|++++| .+..+|.. ++..+++|+.|++
T Consensus 519 ~l~~~~~p~~l~~l~~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 519 RLQQSAAIQPLVSCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCcHHHhcCCCCCEEEecCC-cCCCCccHHHHHHHHCcccCccCC
Confidence 99998 899999999999999999 55555542 2334788888864
No 133
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.22 E-value=4.6e-11 Score=106.89 Aligned_cols=124 Identities=23% Similarity=0.303 Sum_probs=103.6
Q ss_pred cEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccCCCCCcccH-HhhcCCCCCEEeccCC
Q 037847 231 VTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQ-ELKALEKLRYLNLDYA 309 (542)
Q Consensus 231 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~ 309 (542)
++++++++.++.+|... .++|++|++++| .+..+|..+..+.+|++|++++|.++.++. .+..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~~ip~~~---~~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI---PRDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSSCCSCC---CTTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCcCCCCC---CCCCCEEECCCC-cCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 67899999998888653 368999999999 788999999999999999999999999764 5899999999999999
Q ss_pred cccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCCceeeeEecc
Q 037847 310 FHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGS 374 (542)
Q Consensus 310 ~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~ 374 (542)
.+..+|...+..+++|++|++++|.+....+ ..+..+++|+.+++..+.
T Consensus 89 -~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~---------------~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 89 -RLRCIPPRTFDGLKSLRLLSLHGNDISVVPE---------------GAFNDLSALSHLAIGANP 137 (193)
T ss_dssp -CCCBCCTTTTTTCTTCCEEECCSSCCCBCCT---------------TTTTTCTTCCEEECCSSC
T ss_pred -ccCEeCHHHhCCCCCCCEEECCCCCCCeeCh---------------hhhhcCccccEEEeCCCC
Confidence 6777776668999999999999998764222 125567788888887654
No 134
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.21 E-value=2.3e-12 Score=139.07 Aligned_cols=139 Identities=22% Similarity=0.191 Sum_probs=113.0
Q ss_pred ccccccceEEEeecCCcCCCC-CCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCE
Q 037847 202 VEEWEGAKRISLTANGIGSLS-EIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHH 280 (542)
Q Consensus 202 ~~~~~~l~~l~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~ 280 (542)
+..+..++.|++.+|.+..++ .+.++++|++|+|++|.++.+|.. |+.+++|++|+|++| .+..+|..|+.+.+|++
T Consensus 220 ~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~ 297 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAE-IKNLSNLRVLDLSHN-RLTSLPAELGSCFQLKY 297 (727)
T ss_dssp --CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGG-GGGGTTCCEEECTTS-CCSSCCSSGGGGTTCSE
T ss_pred hccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChh-hhCCCCCCEEeCcCC-cCCccChhhcCCCCCCE
Confidence 445678999999999999886 467899999999999999977755 899999999999999 67799999999999999
Q ss_pred EeccCCCCCcccHHhhcCCCCCEEeccCCcccCccchhhcCCCC-CCcEEeccCccccccccCC
Q 037847 281 LDLSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFS-KLEVLRLCGCGRFGVIKGK 343 (542)
Q Consensus 281 L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~-~L~~L~l~~~~~~~~~~~~ 343 (542)
|+|++|.++.+|..++++++|++|+|++|.....+|.. +..+. .+..|++.+|.+.+.+|..
T Consensus 298 L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~-~~~~~~~~~~l~l~~N~l~~~~p~~ 360 (727)
T 4b8c_D 298 FYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKI-LTEKSVTGLIFYLRDNRPEIPLPHE 360 (727)
T ss_dssp EECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHH-HHHHHHHHHHHHHHHCCCCCCCCCC
T ss_pred EECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHH-HhhcchhhhHHhhccCcccCcCccc
Confidence 99999999999999999999999999999554455553 43322 1223566677766666653
No 135
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.18 E-value=1.2e-10 Score=104.24 Aligned_cols=124 Identities=26% Similarity=0.308 Sum_probs=102.8
Q ss_pred EEecCcccccCCcccccccceEEEeecCCcCCCCC---CCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCC
Q 037847 189 LVRAGVKLTEAPKVEEWEGAKRISLTANGIGSLSE---IPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPP 265 (542)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 265 (542)
+...+..+..+|... ..+++.|++.+|.+..++. +..+++|++|++++|.++.+.+..|..+++|++|++++| .+
T Consensus 13 l~~s~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l 90 (192)
T 1w8a_A 13 VDCTGRGLKEIPRDI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN-KI 90 (192)
T ss_dssp EECTTSCCSSCCSCC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC-CC
T ss_pred EEcCCCCcCcCccCC-CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC-cC
Confidence 334455666666532 2489999999999998863 789999999999999999988777999999999999999 55
Q ss_pred CcC-ccccCCCCCCCEEeccCCCCCcc-cHHhhcCCCCCEEeccCCcccCc
Q 037847 266 STL-PSGISGLVSLHHLDLSSTDITGL-PQELKALEKLRYLNLDYAFHLSI 314 (542)
Q Consensus 266 ~~l-p~~i~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~~~~~ 314 (542)
..+ |..++.+++|++|++++|.++.+ |..+..+++|++|++++|.....
T Consensus 91 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 91 KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 555 44589999999999999999985 77899999999999999954433
No 136
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.17 E-value=6.9e-13 Score=119.53 Aligned_cols=152 Identities=24% Similarity=0.276 Sum_probs=111.9
Q ss_pred ceEEEeecC--CcCCCC-CCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEecc
Q 037847 208 AKRISLTAN--GIGSLS-EIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLS 284 (542)
Q Consensus 208 l~~l~l~~~--~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~ 284 (542)
++...+.+. .++.+| .+..+++|++|++++|.++.++ .+..+++|++|++++| .+..+|..++.+++|++|+++
T Consensus 25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~ 101 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWIS 101 (198)
T ss_dssp CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEE
T ss_pred hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECc
Confidence 344444443 344444 4677889999999999888876 4888999999999999 677888888888899999999
Q ss_pred CCCCCcccHHhhcCCCCCEEeccCCcccCccch-hhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhcccc
Q 037847 285 STDITGLPQELKALEKLRYLNLDYAFHLSIIPH-QLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLK 363 (542)
Q Consensus 285 ~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 363 (542)
+|.++.+| .++.+++|++|++++| .+..+|. ..+..+++|++|++++|.+.+.+|... .........+..++
T Consensus 102 ~N~l~~l~-~~~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~-----~~~~~~~~~~~~l~ 174 (198)
T 1ds9_A 102 YNQIASLS-GIEKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENN-----ATSEYRIEVVKRLP 174 (198)
T ss_dssp EEECCCHH-HHHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTT-----THHHHHHHHHHHCS
T ss_pred CCcCCcCC-ccccCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCcccccccccc-----chHHHHHHHHHhCC
Confidence 99999987 6889999999999998 5666654 337889999999999998765433210 00111222356677
Q ss_pred CCceee
Q 037847 364 HLNVLS 369 (542)
Q Consensus 364 ~L~~l~ 369 (542)
+|+.|+
T Consensus 175 ~L~~Ld 180 (198)
T 1ds9_A 175 NLKKLD 180 (198)
T ss_dssp SCSEEC
T ss_pred CcEEEC
Confidence 777766
No 137
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.16 E-value=2.9e-10 Score=100.17 Aligned_cols=123 Identities=28% Similarity=0.422 Sum_probs=101.7
Q ss_pred cCcccccCCcccccccceEEEeecCCcCCCCC--CCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCc
Q 037847 192 AGVKLTEAPKVEEWEGAKRISLTANGIGSLSE--IPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLP 269 (542)
Q Consensus 192 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp 269 (542)
.+..+..+|. ....+++.|++.++.+..++. +..+++|++|++++|.++.+++..+..+++|++|++++| .+..+|
T Consensus 15 ~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~ 92 (177)
T 2o6r_A 15 NSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN-KLQSLP 92 (177)
T ss_dssp CSSCCSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCC
T ss_pred cCCCCccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC-CccccC
Confidence 4445555553 223789999999999998864 688999999999999999988887899999999999999 566666
Q ss_pred cc-cCCCCCCCEEeccCCCCCcccHHh-hcCCCCCEEeccCCcccCccc
Q 037847 270 SG-ISGLVSLHHLDLSSTDITGLPQEL-KALEKLRYLNLDYAFHLSIIP 316 (542)
Q Consensus 270 ~~-i~~l~~L~~L~l~~~~i~~lp~~i-~~l~~L~~L~l~~~~~~~~lp 316 (542)
.. ++.+.+|++|++++|.++.+|..+ ..+++|++|++++|......|
T Consensus 93 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 93 NGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred HHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 54 689999999999999999988764 789999999999995444333
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.14 E-value=2e-10 Score=100.78 Aligned_cols=102 Identities=24% Similarity=0.328 Sum_probs=69.9
Q ss_pred cEEEccCcccccccchhhccCCCccEEEecCCCCCCcC-ccccCCCCCCCEEeccCCCCCcccHH-hhcCCCCCEEeccC
Q 037847 231 VTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTL-PSGISGLVSLHHLDLSSTDITGLPQE-LKALEKLRYLNLDY 308 (542)
Q Consensus 231 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l-p~~i~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~ 308 (542)
+.++++++.+..+|... .++|++|++++| .+..+ |..|+.+.+|++|++++|.++.+|.. +.++++|++|++++
T Consensus 15 ~~l~~~~n~l~~iP~~~---~~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI---PTDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCSSCCSCC---CTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCCccCCCc---CCCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 45666666666665542 266777777777 34444 55677777777777777777777665 36777777777777
Q ss_pred CcccCccchhhcCCCCCCcEEeccCcccc
Q 037847 309 AFHLSIIPHQLISCFSKLEVLRLCGCGRF 337 (542)
Q Consensus 309 ~~~~~~lp~~~~~~l~~L~~L~l~~~~~~ 337 (542)
| .+..+|...+..+++|++|++++|.+.
T Consensus 91 N-~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 91 N-HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp S-CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred C-ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 7 566666655777777888888777653
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.12 E-value=2.7e-10 Score=99.57 Aligned_cols=103 Identities=26% Similarity=0.336 Sum_probs=69.7
Q ss_pred ccEEEccCcccccccchhhccCCCccEEEecCCCCCCcC-ccccCCCCCCCEEeccCCCCCcccHH-hhcCCCCCEEecc
Q 037847 230 LVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTL-PSGISGLVSLHHLDLSSTDITGLPQE-LKALEKLRYLNLD 307 (542)
Q Consensus 230 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l-p~~i~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~ 307 (542)
.+.++++++.++.+|... .++|++|++++| .+..+ |..|+.+.+|++|++++|.++.+|.. +..+++|++|+++
T Consensus 11 ~~~l~~s~n~l~~ip~~~---~~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI---PTTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCCSSCCSCC---CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcCccCccC---CCCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 356666666666665542 266777777777 44444 55577777777777777777776655 3677777777777
Q ss_pred CCcccCccchhhcCCCCCCcEEeccCcccc
Q 037847 308 YAFHLSIIPHQLISCFSKLEVLRLCGCGRF 337 (542)
Q Consensus 308 ~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~ 337 (542)
+| .+..+|...+..+++|++|++++|.+.
T Consensus 87 ~N-~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 87 DN-QLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SS-CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CC-ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 77 566666655777777888887777653
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.10 E-value=5.4e-10 Score=98.02 Aligned_cols=106 Identities=21% Similarity=0.321 Sum_probs=91.6
Q ss_pred eEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccc-cCCCCCCCEEeccCCC
Q 037847 209 KRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSG-ISGLVSLHHLDLSSTD 287 (542)
Q Consensus 209 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~-i~~l~~L~~L~l~~~~ 287 (542)
+.+++.++.+..+|.-. .++|+.|++++|.+..+++..|..+++|++|++++| .+..+|.. +..+.+|++|++++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~-~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI-PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCc-CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCCc
Confidence 57888999998887632 389999999999999998888999999999999999 67778765 5899999999999999
Q ss_pred CCcccHH-hhcCCCCCEEeccCCcccCccch
Q 037847 288 ITGLPQE-LKALEKLRYLNLDYAFHLSIIPH 317 (542)
Q Consensus 288 i~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~ 317 (542)
++.+|.. +..+++|++|++++| .+...+.
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N-~~~c~~~ 122 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNN-PWDCECR 122 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSS-CBCTTBG
T ss_pred cceeCHHHhccccCCCEEEeCCC-Ccccccc
Confidence 9999876 889999999999999 4554443
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.08 E-value=4.2e-12 Score=114.37 Aligned_cols=128 Identities=20% Similarity=0.223 Sum_probs=102.7
Q ss_pred CccEEEccCc--ccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccCCCCCcccHHhhcCCCCCEEec
Q 037847 229 RLVTLLLDGN--RIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITGLPQELKALEKLRYLNL 306 (542)
Q Consensus 229 ~L~~L~l~~~--~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l 306 (542)
.++...+.+. .++.++. .+..+++|++|++++| .+..+| .++.+++|++|++++|.++.+|..+..+++|++|++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~-~~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L 100 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDA-TLSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWI 100 (198)
T ss_dssp TCSEEECCBCCTTCCCCHH-HHHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEE
T ss_pred chheeEeccccCcHhhhhH-HHhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEEC
Confidence 3444555544 3444444 4889999999999999 677788 899999999999999999999999999999999999
Q ss_pred cCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhccccCCceeeeEecchH
Q 037847 307 DYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSL 376 (542)
Q Consensus 307 ~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~ 376 (542)
++| .+..+|. ++.+++|++|++++|.+... ..+..+..+++|+.++++.+...
T Consensus 101 ~~N-~l~~l~~--~~~l~~L~~L~l~~N~i~~~--------------~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 101 SYN-QIASLSG--IEKLVNLRVLYMSNNKITNW--------------GEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp EEE-ECCCHHH--HHHHHHSSEEEESEEECCCH--------------HHHHHHTTTTTCSEEEECSCHHH
T ss_pred cCC-cCCcCCc--cccCCCCCEEECCCCcCCch--------------hHHHHHhcCCCCCEEEecCCccc
Confidence 999 6777874 78899999999999986421 22356888999999999877643
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.04 E-value=1e-09 Score=95.83 Aligned_cols=101 Identities=23% Similarity=0.359 Sum_probs=88.5
Q ss_pred ceEEEeecCCcCCCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccc-cCCCCCCCEEeccCC
Q 037847 208 AKRISLTANGIGSLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSG-ISGLVSLHHLDLSST 286 (542)
Q Consensus 208 l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~-i~~l~~L~~L~l~~~ 286 (542)
.+.++++++.+..+|.-. .++|++|++++|.++.+++..|..+++|++|++++| .+..+|.. +..+.+|++|++++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCCC
Confidence 467899999999887532 489999999999999998888999999999999999 67777655 589999999999999
Q ss_pred CCCcccHH-hhcCCCCCEEeccCCc
Q 037847 287 DITGLPQE-LKALEKLRYLNLDYAF 310 (542)
Q Consensus 287 ~i~~lp~~-i~~l~~L~~L~l~~~~ 310 (542)
.++.+|.. +..+++|++|++++|.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 99998875 8899999999999994
No 143
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.99 E-value=2.5e-09 Score=104.36 Aligned_cols=286 Identities=13% Similarity=0.063 Sum_probs=155.9
Q ss_pred cccceEEEeecCCc-CCCCCCCC-CCCccEEEccCcccc--cccchhhccCCCccEEEecCCCCCCcCc-cccCC-----
Q 037847 205 WEGAKRISLTANGI-GSLSEIPT-CPRLVTLLLDGNRIE--EITDGFFQSLSTLRVLSLRGNFPPSTLP-SGISG----- 274 (542)
Q Consensus 205 ~~~l~~l~l~~~~~-~~~~~~~~-~~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~lp-~~i~~----- 274 (542)
+.+++.|.+.++-- ..+..+.. +++|++|++++|.+. ..... .++.++.+.+..+ .+| ..|..
T Consensus 24 ~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~----~I~~~aF~~~~~~~ 96 (329)
T 3sb4_A 24 ANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMAN----FVPAYAFSNVVNGV 96 (329)
T ss_dssp HHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTT----EECTTTTEEEETTE
T ss_pred hCceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCccc---ccccccccccccc----ccCHHHhccccccc
Confidence 34566666665310 01111122 677888888887765 22221 2222444444444 222 23445
Q ss_pred ---CCCCCEEeccCCCCCcccHH-hhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccC
Q 037847 275 ---LVSLHHLDLSSTDITGLPQE-LKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCD 350 (542)
Q Consensus 275 ---l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 350 (542)
+.+|+.+++.. .++.++.. +..+++|+.+++.++ .+..++..++..+.++..+...........
T Consensus 97 ~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n-~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~---------- 164 (329)
T 3sb4_A 97 TKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKK-TAPNLLPEALADSVTAIFIPLGSSDAYRFK---------- 164 (329)
T ss_dssp EEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCS-SCCEECTTSSCTTTCEEEECTTCTHHHHTS----------
T ss_pred ccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCC-CccccchhhhcCCCceEEecCcchhhhhcc----------
Confidence 78888888877 77776544 677888888888877 455666666766666666655431110000
Q ss_pred CCcchhHhhccccCCc-eeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceeccc-ccccccceeeecccCcc
Q 037847 351 GAEPLMKELLGLKHLN-VLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHL-AYMENLQELELESCNLE 428 (542)
Q Consensus 351 ~~~~~~~~l~~L~~L~-~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~ 428 (542)
.......+..+..|+ .+.+......... +....-....+..+.+.+.-. ......+ ..+++|++|++++|.+.
T Consensus 165 -~~i~~~~f~~~~~L~~~i~~~~~~~l~~~-~~~~~~~~~~~~~l~~~~~l~---~~~~~~l~~~~~~L~~l~L~~n~i~ 239 (329)
T 3sb4_A 165 -NRWEHFAFIEGEPLETTIQVGAMGKLEDE-IMKAGLQPRDINFLTIEGKLD---NADFKLIRDYMPNLVSLDISKTNAT 239 (329)
T ss_dssp -TTTTTSCEEESCCCEEEEEECTTCCHHHH-HHHTTCCGGGCSEEEEEECCC---HHHHHHHHHHCTTCCEEECTTBCCC
T ss_pred -ccccccccccccccceeEEecCCCcHHHH-HhhcccCccccceEEEeeeec---HHHHHHHHHhcCCCeEEECCCCCcc
Confidence 000000122233333 2222211111111 111111112223333322110 0011111 13789999999999888
Q ss_pred ceeeccchhhcccccccccccCEEEEccCCC-CCcchhhhccCcc-eEEEeccchhhhcccccccccccccCCcCCCCCc
Q 037847 429 EMKIDSTEEVKKLFRNGFRNLNTVVLRSCRG-KDLTWLVFVQNLK-QLNMQGFTMEEIISVEKLSDISEVIGSEHNFFPR 506 (542)
Q Consensus 429 ~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~-~~~~~l~~l~~L~-~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (542)
.++...+. .+.+|++|++.++-. -....+.++++|+ .+.+.+ .++.+.. .....+++
T Consensus 240 ~I~~~aF~--------~~~~L~~l~l~~ni~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~------------~aF~~c~~ 298 (329)
T 3sb4_A 240 TIPDFTFA--------QKKYLLKIKLPHNLKTIGQRVFSNCGRLAGTLELPA-SVTAIEF------------GAFMGCDN 298 (329)
T ss_dssp EECTTTTT--------TCTTCCEEECCTTCCEECTTTTTTCTTCCEEEEECT-TCCEECT------------TTTTTCTT
T ss_pred eecHhhhh--------CCCCCCEEECCcccceehHHHhhCChhccEEEEEcc-cceEEch------------hhhhCCcc
Confidence 87665553 388999999988733 3334477899999 999988 6666643 36667889
Q ss_pred cceeecccCCcccccCCC-CCCCCCcceEee
Q 037847 507 LEYLTMWRGTNLKSVYPN-PQPFPKLKKIQA 536 (542)
Q Consensus 507 L~~L~l~~c~~l~~~~~~-~~~~p~L~~L~i 536 (542)
|+.+.+.+ ..++.++.. ...+++|++++.
T Consensus 299 L~~l~l~~-n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 299 LRYVLATG-DKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEEEEECS-SCCCEECTTTTCTTCCCCEEEC
T ss_pred CCEEEeCC-CccCccchhhhcCCcchhhhcc
Confidence 99999866 467777653 445788888764
No 144
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.91 E-value=6.3e-09 Score=101.46 Aligned_cols=56 Identities=21% Similarity=0.420 Sum_probs=31.3
Q ss_pred CCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcC-ccccCCCCCCCEEecc
Q 037847 227 CPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTL-PSGISGLVSLHHLDLS 284 (542)
Q Consensus 227 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l-p~~i~~l~~L~~L~l~ 284 (542)
+++|+.+.+.. .++.++...|.++.+|+.+++.++ .+..+ +..|..+.++.++...
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n-~i~~i~~~aF~~~~~l~~l~~~ 156 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKK-TAPNLLPEALADSVTAIFIPLG 156 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCS-SCCEECTTSSCTTTCEEEECTT
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCC-CccccchhhhcCCCceEEecCc
Confidence 66666666666 566666666666666666666666 33232 3334455555544443
No 145
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.83 E-value=1.3e-07 Score=94.48 Aligned_cols=103 Identities=20% Similarity=0.208 Sum_probs=81.1
Q ss_pred CCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCc-cccCCCCCCCEEeccCCCCCcccHHhhcCCCCC
Q 037847 224 IPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLP-SGISGLVSLHHLDLSSTDITGLPQELKALEKLR 302 (542)
Q Consensus 224 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp-~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~ 302 (542)
|.++ +|+.+.+..+ ++.+....|.++ +|+.+.+..+ +..++ ..|..+.+|+.+++.++.++.+|...-...+|+
T Consensus 132 F~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~~--l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~ 206 (401)
T 4fdw_A 132 FRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPST--LEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIE 206 (401)
T ss_dssp TTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCTT--CCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCS
T ss_pred cccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCCC--ccEehHHHhhCcccCCeeecCCCcceEechhhEeecccC
Confidence 5554 6888888766 777777778774 6999998864 45443 567889999999999888998888766678999
Q ss_pred EEeccCCcccCccchhhcCCCCCCcEEeccC
Q 037847 303 YLNLDYAFHLSIIPHQLISCFSKLEVLRLCG 333 (542)
Q Consensus 303 ~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~ 333 (542)
.+.+..+ +..++..++.++++|+.+.+..
T Consensus 207 ~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 207 EVLLPVT--LKEIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp EEECCTT--CCEECTTTTTTCTTCCCEECCT
T ss_pred EEEeCCc--hheehhhHhhCCCCCCEEecCC
Confidence 9999754 7778877788889999998865
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.78 E-value=1.6e-08 Score=99.47 Aligned_cols=98 Identities=19% Similarity=0.239 Sum_probs=65.3
Q ss_pred EEeecC-CcCCCCCCCCCCCccEEEccC-cccccccchhhccCCCccEEEecCCCCCCcC-ccccCCCCCCCEEeccCCC
Q 037847 211 ISLTAN-GIGSLSEIPTCPRLVTLLLDG-NRIEEITDGFFQSLSTLRVLSLRGNFPPSTL-PSGISGLVSLHHLDLSSTD 287 (542)
Q Consensus 211 l~l~~~-~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l-p~~i~~l~~L~~L~l~~~~ 287 (542)
++..++ .+..+|.+..+++|+.|+|++ |.+..+++..|..+++|++|+|++| .+..+ |..|+.+.+|++|+|++|.
T Consensus 13 v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 13 LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp EECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCCc
Confidence 455555 666666666667777777775 7777777666777777777777777 34443 3456777777777777777
Q ss_pred CCcccHHhhcCCCCCEEeccCC
Q 037847 288 ITGLPQELKALEKLRYLNLDYA 309 (542)
Q Consensus 288 i~~lp~~i~~l~~L~~L~l~~~ 309 (542)
++.+|..+.....|++|++.+|
T Consensus 92 l~~~~~~~~~~~~L~~l~l~~N 113 (347)
T 2ifg_A 92 LESLSWKTVQGLSLQELVLSGN 113 (347)
T ss_dssp CSCCCSTTTCSCCCCEEECCSS
T ss_pred cceeCHHHcccCCceEEEeeCC
Confidence 7777665544444777777776
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.76 E-value=2.1e-08 Score=98.49 Aligned_cols=102 Identities=18% Similarity=0.266 Sum_probs=86.9
Q ss_pred cEEEccCc-ccccccchhhccCCCccEEEecC-CCCCCcCc-cccCCCCCCCEEeccCCCCCcccH-HhhcCCCCCEEec
Q 037847 231 VTLLLDGN-RIEEITDGFFQSLSTLRVLSLRG-NFPPSTLP-SGISGLVSLHHLDLSSTDITGLPQ-ELKALEKLRYLNL 306 (542)
Q Consensus 231 ~~L~l~~~-~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~lp-~~i~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l 306 (542)
..++.+++ .++.+|. +..+.+|++|+|++ | .+..+| ..|+.+.+|++|+|++|.++.+|+ .+.+|++|++|+|
T Consensus 11 ~~v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH--LPGAENLTELYIENQQ-HLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87 (347)
T ss_dssp SCEECCSSCCCTTTTT--SCSCSCCSEEECCSCS-SCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred CEEEcCCCCCCCccCC--CCCCCCeeEEEccCCC-CCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence 35688887 8888877 88999999999997 7 677766 579999999999999999999765 6799999999999
Q ss_pred cCCcccCccchhhcCCCCCCcEEeccCcccc
Q 037847 307 DYAFHLSIIPHQLISCFSKLEVLRLCGCGRF 337 (542)
Q Consensus 307 ~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~ 337 (542)
++| .+..+|...+..++ |+.|++.+|.+.
T Consensus 88 ~~N-~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 88 SFN-ALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CSS-CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CCC-ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 999 77888887566665 999999998764
No 148
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.67 E-value=5.2e-07 Score=90.05 Aligned_cols=222 Identities=12% Similarity=0.163 Sum_probs=142.1
Q ss_pred cceEEEeecCCcCCCC--CCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEecc
Q 037847 207 GAKRISLTANGIGSLS--EIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLS 284 (542)
Q Consensus 207 ~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~ 284 (542)
+++.+.+..+ +..+. .|.++ +|+.+.+.. .+..+....|.++.+|+.+++.++ .+..+|.......+|+.+.+.
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n-~l~~I~~~aF~~~~L~~l~lp 211 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKT-KITKLPASTFVYAGIEEVLLP 211 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTS-CCSEECTTTTTTCCCSEEECC
T ss_pred CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCC-cceEechhhEeecccCEEEeC
Confidence 5777776654 55553 35564 699999986 677888888999999999999988 678887766567899999997
Q ss_pred CCCCCcccH-HhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhcccc
Q 037847 285 STDITGLPQ-ELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELLGLK 363 (542)
Q Consensus 285 ~~~i~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 363 (542)
.+ ++.++. .+.++.+|+.+.+..+ +..++..++.+ .+|+.+.+.. .+. .+ ....+.+++
T Consensus 212 ~~-l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp~-~i~-~I--------------~~~aF~~c~ 271 (401)
T 4fdw_A 212 VT-LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLPN-GVT-NI--------------ASRAFYYCP 271 (401)
T ss_dssp TT-CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEET-TCC-EE--------------CTTTTTTCT
T ss_pred Cc-hheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeCC-Ccc-EE--------------ChhHhhCCC
Confidence 54 777654 4678899999999875 67777776777 7899998843 221 11 112356667
Q ss_pred CCceeeeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccchhhccccc
Q 037847 364 HLNVLSWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFR 443 (542)
Q Consensus 364 ~L~~l~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 443 (542)
+|+.+.+..+... ...........+..+++|+.+++.. .+..+....+
T Consensus 272 ~L~~l~l~~~~~~-----------------------~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF-------- 319 (401)
T 4fdw_A 272 ELAEVTTYGSTFN-----------------------DDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLL-------- 319 (401)
T ss_dssp TCCEEEEESSCCC-----------------------CCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTT--------
T ss_pred CCCEEEeCCcccc-----------------------CCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhh--------
Confidence 7777766532210 0000011123455677777777763 3444433333
Q ss_pred ccccccCEEEEccCCC-CCcchhhhccCcceEEEeccchhhhc
Q 037847 444 NGFRNLNTVVLRSCRG-KDLTWLVFVQNLKQLNMQGFTMEEII 485 (542)
Q Consensus 444 ~~l~~L~~L~L~~c~~-~~~~~l~~l~~L~~L~L~~~~l~~~~ 485 (542)
..+.+|+.+.|..+-. -....+.++ +|+.+++.++.+..+.
T Consensus 320 ~~c~~L~~l~lp~~l~~I~~~aF~~~-~L~~l~l~~n~~~~l~ 361 (401)
T 4fdw_A 320 GGNRKVTQLTIPANVTQINFSAFNNT-GIKEVKVEGTTPPQVF 361 (401)
T ss_dssp TTCCSCCEEEECTTCCEECTTSSSSS-CCCEEEECCSSCCBCC
T ss_pred cCCCCccEEEECccccEEcHHhCCCC-CCCEEEEcCCCCcccc
Confidence 2367777777755432 222335556 7777777776655543
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.54 E-value=9.9e-09 Score=101.49 Aligned_cols=128 Identities=16% Similarity=0.142 Sum_probs=64.3
Q ss_pred ccceEEEeecCCcCCCC--C----C-CCCCCccEEEccCcccccccc-hhhccCCCccEEEecCCCCCCcC-cccc----
Q 037847 206 EGAKRISLTANGIGSLS--E----I-PTCPRLVTLLLDGNRIEEITD-GFFQSLSTLRVLSLRGNFPPSTL-PSGI---- 272 (542)
Q Consensus 206 ~~l~~l~l~~~~~~~~~--~----~-~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~l-p~~i---- 272 (542)
..++.+++.++.+.... . + ...++|+.|++++|.+..... .....+++|++|+|++| .+... ...+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~L 150 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDLL 150 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHHH
Confidence 45666777766654321 0 1 123566666666665543221 11233456666666666 33221 1111
Q ss_pred -CCCCCCCEEeccCCCCCc-----ccHHhhcCCCCCEEeccCCcccCc-----cchhhcCCCCCCcEEeccCccc
Q 037847 273 -SGLVSLHHLDLSSTDITG-----LPQELKALEKLRYLNLDYAFHLSI-----IPHQLISCFSKLEVLRLCGCGR 336 (542)
Q Consensus 273 -~~l~~L~~L~l~~~~i~~-----lp~~i~~l~~L~~L~l~~~~~~~~-----lp~~~~~~l~~L~~L~l~~~~~ 336 (542)
....+|++|++++|.++. ++..+..+++|++|++++|. +.. ++.. +...++|++|++++|.+
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~-L~~~~~L~~L~Ls~N~i 223 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQ-LDRNRQLQELNVAYNGA 223 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHH-GGGCSCCCEEECCSSCC
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHH-HhcCCCcCeEECCCCCC
Confidence 234556666666666543 34444556666666666663 221 1222 34455666666666554
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.51 E-value=1.9e-08 Score=99.51 Aligned_cols=129 Identities=22% Similarity=0.259 Sum_probs=90.8
Q ss_pred ccceEEEeecCCcCCC--CCC-CCCCCccEEEccCcccccccchhh-----ccCCCccEEEecCCCCCCc-----Ccccc
Q 037847 206 EGAKRISLTANGIGSL--SEI-PTCPRLVTLLLDGNRIEEITDGFF-----QSLSTLRVLSLRGNFPPST-----LPSGI 272 (542)
Q Consensus 206 ~~l~~l~l~~~~~~~~--~~~-~~~~~L~~L~l~~~~~~~~~~~~~-----~~l~~L~~L~l~~~~~~~~-----lp~~i 272 (542)
.+++.|++++|.+... ..+ ..+++|+.|++++|.+.......+ ...++|++|++++| .+.. ++..+
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L 179 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNN-PLTAAGVAVLMEGL 179 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSS-CCHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCC-CCChHHHHHHHHHH
Confidence 5788899998877542 122 235678899999998765443333 34678999999998 4432 44555
Q ss_pred CCCCCCCEEeccCCCCCc-----ccHHhhcCCCCCEEeccCCcccCc-----cchhhcCCCCCCcEEeccCcccc
Q 037847 273 SGLVSLHHLDLSSTDITG-----LPQELKALEKLRYLNLDYAFHLSI-----IPHQLISCFSKLEVLRLCGCGRF 337 (542)
Q Consensus 273 ~~l~~L~~L~l~~~~i~~-----lp~~i~~l~~L~~L~l~~~~~~~~-----lp~~~~~~l~~L~~L~l~~~~~~ 337 (542)
..+++|++|++++|.++. ++..+...++|++|++++| .++. ++.. +...++|++|++++|.+.
T Consensus 180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~g~~~l~~~-L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN-GAGDTAALALARA-AREHPSLELLHLYFNELS 252 (372)
T ss_dssp HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHHHHHHHHHH-HHHCSSCCEEECTTSSCC
T ss_pred hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHHHHHHHHHH-HHhCCCCCEEeccCCCCC
Confidence 678889999999988775 4566777888999999998 4442 2222 445688999999988764
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.37 E-value=3.6e-07 Score=89.52 Aligned_cols=151 Identities=18% Similarity=0.160 Sum_probs=81.3
Q ss_pred ccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCccccccccCCCCccccCCCcchhHhhc--cccCCcee
Q 037847 291 LPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCGRFGVIKGKEGNVLCDGAEPLMKELL--GLKHLNVL 368 (542)
Q Consensus 291 lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~L~~L~~l 368 (542)
++..+..+++|+.|++++|... .++. +. +++|++|.+..|.+. ...+..+. .+++|+.|
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l-~l~~--~~-~~~L~~L~L~~~~l~---------------~~~l~~l~~~~lp~L~~L 224 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL-SIGK--KP-RPNLKSLEIISGGLP---------------DSVVEDILGSDLPNLEKL 224 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC-BCCS--CB-CTTCSEEEEECSBCC---------------HHHHHHHHHSBCTTCCEE
T ss_pred HHHHHhcCCCCcEEEEeCCCCc-eecc--cc-CCCCcEEEEecCCCC---------------hHHHHHHHHccCCCCcEE
Confidence 4555666777777777766222 3333 32 667777777766542 12333333 56677777
Q ss_pred eeEecchHHHHHhhcCchhhccceeEEeccccCCCCCceecccccccccceeeecccCccceeeccchhhcccccccccc
Q 037847 369 SWSFGSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELESCNLEEMKIDSTEEVKKLFRNGFRN 448 (542)
Q Consensus 369 ~~~~~~~~~~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 448 (542)
+++.+....... .....+ ........+++|++|++.+|.+........ .....+++
T Consensus 225 ~L~~~~~~~~~~-~~~~~l------------------~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~l-----a~a~~~~~ 280 (362)
T 2ra8_A 225 VLYVGVEDYGFD-GDMNVF------------------RPLFSKDRFPNLKWLGIVDAEEQNVVVEMF-----LESDILPQ 280 (362)
T ss_dssp EEECBCGGGTCC-SCGGGT------------------GGGSCTTTCTTCCEEEEESCTTHHHHHHHH-----HHCSSGGG
T ss_pred EEeccccccccc-hhHHHH------------------HHHHhcCCCCCcCEEeCCCCCCchHHHHHH-----HhCccCCC
Confidence 665322110000 000000 000111246788888888887754111101 11134788
Q ss_pred cCEEEEccCCCCC------cchhhhccCcceEEEeccchhhh
Q 037847 449 LNTVVLRSCRGKD------LTWLVFVQNLKQLNMQGFTMEEI 484 (542)
Q Consensus 449 L~~L~L~~c~~~~------~~~l~~l~~L~~L~L~~~~l~~~ 484 (542)
|+.|+|+.|.+.. ...+..+++|+.|+|++|.+.+.
T Consensus 281 L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~ 322 (362)
T 2ra8_A 281 LETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE 322 (362)
T ss_dssp CSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH
T ss_pred CCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHH
Confidence 8888888887721 22345678888898888776654
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.22 E-value=1.6e-06 Score=84.94 Aligned_cols=58 Identities=17% Similarity=0.274 Sum_probs=32.0
Q ss_pred hhccCCCccEEEecCCCCCCcCccccCCCCCCCEEeccCCCCCc-ccHHhh--cCCCCCEEecc
Q 037847 247 FFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLDLSSTDITG-LPQELK--ALEKLRYLNLD 307 (542)
Q Consensus 247 ~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~-lp~~i~--~l~~L~~L~l~ 307 (542)
.+..+++|+.|+++++. ...+|. +. +++|++|++..|.+.. ....+. .+++|++|+|+
T Consensus 167 ll~~~P~L~~L~L~g~~-~l~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTN-NLSIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHHTCTTCCEEEEECCB-TCBCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred HHhcCCCCcEEEEeCCC-Cceecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 35566777777777662 123333 32 5667777776665543 112222 56677777664
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.12 E-value=6.5e-07 Score=77.13 Aligned_cols=98 Identities=14% Similarity=0.236 Sum_probs=68.2
Q ss_pred cccceeeecccCccceeeccchhhcccccccccccCEEEEccCCC---CCcchhhhc----cCcceEEEec-cchhhhcc
Q 037847 415 ENLQELELESCNLEEMKIDSTEEVKKLFRNGFRNLNTVVLRSCRG---KDLTWLVFV----QNLKQLNMQG-FTMEEIIS 486 (542)
Q Consensus 415 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~---~~~~~l~~l----~~L~~L~L~~-~~l~~~~~ 486 (542)
.+|++|++++|.++...+..+ ..+++|++|+|++|.. ..+..+..+ ++|++|+|++ ..+++...
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L--------~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl 132 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHM--------EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI 132 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGG--------TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred ceEeEEeCcCCCccHHHHHHh--------cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH
Confidence 479999999998665332222 4589999999999975 444455553 5799999999 56877643
Q ss_pred cccccccccccCCcCCCCCccceeecccCCcccccCC----CCCCCCCcc
Q 037847 487 VEKLSDISEVIGSEHNFFPRLEYLTMWRGTNLKSVYP----NPQPFPKLK 532 (542)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~----~~~~~p~L~ 532 (542)
. ....+++|++|++.+|+.+++... -..++|+++
T Consensus 133 ~------------~L~~~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~ 170 (176)
T 3e4g_A 133 I------------ALHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLE 170 (176)
T ss_dssp H------------HGGGCTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCE
T ss_pred H------------HHhcCCCCCEEECCCCCCCCchHHHHHHHHHHCCCcE
Confidence 1 344689999999999998876321 123467765
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.02 E-value=2.3e-06 Score=73.64 Aligned_cols=83 Identities=7% Similarity=-0.026 Sum_probs=49.2
Q ss_pred ccCEEEEccCCC--CCcchhhhccCcceEEEec-cchhhhcccccccccccccCCcCCC----CCccceeecccCCcccc
Q 037847 448 NLNTVVLRSCRG--KDLTWLVFVQNLKQLNMQG-FTMEEIISVEKLSDISEVIGSEHNF----FPRLEYLTMWRGTNLKS 520 (542)
Q Consensus 448 ~L~~L~L~~c~~--~~~~~l~~l~~L~~L~L~~-~~l~~~~~~~~~~~~~~~~~~~~~~----~~~L~~L~l~~c~~l~~ 520 (542)
+|+.|++++|.+ ..+..+..+++|++|+|++ ..+++.... .+.. .++|++|+|++|+++++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~------------~L~~~~~~~~~L~~L~Ls~C~~ITD 129 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLE------------RLSQLENLQKSMLEMEIISCGNVTD 129 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHH------------HHHTCHHHHHHCCEEEEESCTTCCH
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHH------------HHHhcccccCCCCEEEcCCCCcCCH
Confidence 567777777766 5555566777777777777 345554321 1111 34677777777776655
Q ss_pred cCC-CCCCCCCcceEeeccCCCC
Q 037847 521 VYP-NPQPFPKLKKIQAFHCRQL 542 (542)
Q Consensus 521 ~~~-~~~~~p~L~~L~i~~C~~L 542 (542)
-.. ....+|+|++|++++|+++
T Consensus 130 ~Gl~~L~~~~~L~~L~L~~c~~I 152 (176)
T 3e4g_A 130 KGIIALHHFRNLKYLFLSDLPGV 152 (176)
T ss_dssp HHHHHGGGCTTCCEEEEESCTTC
T ss_pred HHHHHHhcCCCCCEEECCCCCCC
Confidence 221 1234677777777777653
No 155
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.98 E-value=0.00016 Score=71.98 Aligned_cols=37 Identities=24% Similarity=0.387 Sum_probs=22.8
Q ss_pred hhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccC
Q 037847 295 LKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCG 333 (542)
Q Consensus 295 i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~ 333 (542)
+.++.+|+.+.+.++ ...++...+..+.+|+.+.+..
T Consensus 158 F~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~ 194 (394)
T 4fs7_A 158 FATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPR 194 (394)
T ss_dssp TTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCT
T ss_pred hcccCCCcEEecCCc--cceeccccccCCCCceEEEcCC
Confidence 456667777777554 3455555566666777666643
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.87 E-value=3.6e-06 Score=78.16 Aligned_cols=80 Identities=26% Similarity=0.268 Sum_probs=45.0
Q ss_pred ccCCCccEEEecCCCCCCcC---ccccCCCCCCCEEeccCCCCCcccHHhhcCC--CCCEEeccCCcccCccch------
Q 037847 249 QSLSTLRVLSLRGNFPPSTL---PSGISGLVSLHHLDLSSTDITGLPQELKALE--KLRYLNLDYAFHLSIIPH------ 317 (542)
Q Consensus 249 ~~l~~L~~L~l~~~~~~~~l---p~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~--~L~~L~l~~~~~~~~lp~------ 317 (542)
..+++|+.|+|++| .+..+ |..++.+++|++|+|++|.++.+ ..+..+. +|++|++++|.....+|.
T Consensus 167 ~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 45667777777777 34333 34445666777777777666665 2344444 666666666643333331
Q ss_pred hhcCCCCCCcEEe
Q 037847 318 QLISCFSKLEVLR 330 (542)
Q Consensus 318 ~~~~~l~~L~~L~ 330 (542)
.++..+++|+.|+
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 2244556666654
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.83 E-value=1.1e-05 Score=70.95 Aligned_cols=81 Identities=21% Similarity=0.236 Sum_probs=40.4
Q ss_pred CCCCCccEEEccCc-cccccc----chhhccCCCccEEEecCCCCCCc-----CccccCCCCCCCEEeccCCCCCc----
Q 037847 225 PTCPRLVTLLLDGN-RIEEIT----DGFFQSLSTLRVLSLRGNFPPST-----LPSGISGLVSLHHLDLSSTDITG---- 290 (542)
Q Consensus 225 ~~~~~L~~L~l~~~-~~~~~~----~~~~~~l~~L~~L~l~~~~~~~~-----lp~~i~~l~~L~~L~l~~~~i~~---- 290 (542)
...+.|++|++++| .+.... ...+...++|++|+|++| .+.. +...+....+|++|+|++|.|..
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 34556666666666 553211 122344556666666666 2321 22233334556666666665554
Q ss_pred -ccHHhhcCCCCCEEec
Q 037847 291 -LPQELKALEKLRYLNL 306 (542)
Q Consensus 291 -lp~~i~~l~~L~~L~l 306 (542)
+...+...++|++|++
T Consensus 112 ~l~~~L~~n~~L~~L~L 128 (185)
T 1io0_A 112 ALVEALQSNTSLIELRI 128 (185)
T ss_dssp HHHHGGGGCSSCCEEEC
T ss_pred HHHHHHHhCCCceEEEe
Confidence 3444455555666666
No 158
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.81 E-value=0.00011 Score=73.15 Aligned_cols=84 Identities=17% Similarity=0.147 Sum_probs=44.6
Q ss_pred cccchhhccCCCccEEEecCCCCCCcCc-cccCCCCCCCEEeccCCCCCccc-HHhhcCCCCCEEeccCCcccCccchhh
Q 037847 242 EITDGFFQSLSTLRVLSLRGNFPPSTLP-SGISGLVSLHHLDLSSTDITGLP-QELKALEKLRYLNLDYAFHLSIIPHQL 319 (542)
Q Consensus 242 ~~~~~~~~~l~~L~~L~l~~~~~~~~lp-~~i~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~~~~~~~lp~~~ 319 (542)
.+....|..+.+|+.+.+.++ ...++ ..|..+.+|+.+.+..+ ++.++ ..+.++..|+.+.+..+ ...+...
T Consensus 152 ~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~--~~~i~~~- 225 (394)
T 4fs7_A 152 VIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNS--LYYLGDF- 225 (394)
T ss_dssp EECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTT--CCEECTT-
T ss_pred ccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCC--ceEeehh-
Confidence 344455777777777777654 23332 34566777777777554 44433 23455666666665543 2222222
Q ss_pred cCCCCCCcEEec
Q 037847 320 ISCFSKLEVLRL 331 (542)
Q Consensus 320 ~~~l~~L~~L~l 331 (542)
.....+|+.+.+
T Consensus 226 ~~~~~~l~~i~i 237 (394)
T 4fs7_A 226 ALSKTGVKNIII 237 (394)
T ss_dssp TTTTCCCCEEEE
T ss_pred hcccCCCceEEE
Confidence 223345555554
No 159
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.78 E-value=2.7e-05 Score=68.51 Aligned_cols=119 Identities=15% Similarity=0.112 Sum_probs=86.4
Q ss_pred chhhccCCCccEEEecCC-CCCC----cCccccCCCCCCCEEeccCCCCCc-----ccHHhhcCCCCCEEeccCCcccCc
Q 037847 245 DGFFQSLSTLRVLSLRGN-FPPS----TLPSGISGLVSLHHLDLSSTDITG-----LPQELKALEKLRYLNLDYAFHLSI 314 (542)
Q Consensus 245 ~~~~~~l~~L~~L~l~~~-~~~~----~lp~~i~~l~~L~~L~l~~~~i~~-----lp~~i~~l~~L~~L~l~~~~~~~~ 314 (542)
...+...+.|++|+|++| .... .+...+....+|++|+|++|.+.. +...+...++|++|++++|. +..
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~ 107 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF-ISG 107 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC-CCH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc-CCH
Confidence 344778899999999998 4322 244566778999999999999875 55667778899999999994 442
Q ss_pred -----cchhhcCCCCCCcEEec--cCccccccccCCCCccccCCCcchhHhhccccCCceeeeEecchH
Q 037847 315 -----IPHQLISCFSKLEVLRL--CGCGRFGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSSL 376 (542)
Q Consensus 315 -----lp~~~~~~l~~L~~L~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~ 376 (542)
+... +...++|++|++ ++|.+... ........+...++|+.|+++.+...
T Consensus 108 ~g~~~l~~~-L~~n~~L~~L~L~~~~N~i~~~-----------g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 108 SGILALVEA-LQSNTSLIELRIDNQSQPLGNN-----------VEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHG-GGGCSSCCEEECCCCSSCCCHH-----------HHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHH-HHhCCCceEEEecCCCCCCCHH-----------HHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3343 667789999999 77876421 11123445566788999999887654
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.64 E-value=5.4e-05 Score=70.23 Aligned_cols=87 Identities=21% Similarity=0.174 Sum_probs=61.3
Q ss_pred CCCCCCCEEeccCCCCCcc---cHHhhcCCCCCEEeccCCcccCccchhhcCCCC--CCcEEeccCccccccccCCCCcc
Q 037847 273 SGLVSLHHLDLSSTDITGL---PQELKALEKLRYLNLDYAFHLSIIPHQLISCFS--KLEVLRLCGCGRFGVIKGKEGNV 347 (542)
Q Consensus 273 ~~l~~L~~L~l~~~~i~~l---p~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~--~L~~L~l~~~~~~~~~~~~~~~~ 347 (542)
.++++|+.|+|++|.++.+ |..+..+++|++|+|++| .+..+.. +..+. +|++|++.+|++.+.+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~--l~~l~~l~L~~L~L~~Npl~~~~~~----- 238 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERE--LDKIKGLKLEELWLDGNSLCDTFRD----- 238 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGG--GGGGTTSCCSEEECTTSTTGGGCSS-----
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCchh--hhhcccCCcceEEccCCcCccccCc-----
Confidence 4678999999999988875 467789999999999999 5665533 44444 999999999998754331
Q ss_pred ccCCCcchhHhhccccCCceeee
Q 037847 348 LCDGAEPLMKELLGLKHLNVLSW 370 (542)
Q Consensus 348 ~~~~~~~~~~~l~~L~~L~~l~~ 370 (542)
.......-+..+++|+.|+-
T Consensus 239 ---~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 239 ---QSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp ---HHHHHHHHHHHCTTCCEESS
T ss_pred ---chhHHHHHHHHCcccCeECC
Confidence 01112233556666666553
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.35 E-value=0.0086 Score=58.91 Aligned_cols=121 Identities=12% Similarity=0.197 Sum_probs=62.8
Q ss_pred cccceEEEeecCCcCCCC--CCCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcCccccCCCCCCCEEe
Q 037847 205 WEGAKRISLTANGIGSLS--EIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTLPSGISGLVSLHHLD 282 (542)
Q Consensus 205 ~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~i~~l~~L~~L~ 282 (542)
..+++.+.+.. .++.++ .|.+|.+|+.+.+..+ ++.+....|.++ +|+.+.+..+ +..++.......+|+.+.
T Consensus 45 ~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~--l~~I~~~aF~~~~L~~i~ 119 (379)
T 4h09_A 45 RDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER--VKKFGDYVFQGTDLDDFE 119 (379)
T ss_dssp GGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT--CCEECTTTTTTCCCSEEE
T ss_pred ccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce--eeEeccceeccCCccccc
Confidence 34566666543 344443 3677777777777543 556666666665 4555555443 444443332334677777
Q ss_pred ccCCCCCcccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccC
Q 037847 283 LSSTDITGLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCG 333 (542)
Q Consensus 283 l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~ 333 (542)
+..+ +..+......-.+|....+..+ +..+....+....+++...+..
T Consensus 120 lp~~-~~~i~~~~F~~~~l~~~~~~~~--v~~i~~~~f~~~~~l~~~~~~~ 167 (379)
T 4h09_A 120 FPGA-TTEIGNYIFYNSSVKRIVIPKS--VTTIKDGIGYKAENLEKIEVSS 167 (379)
T ss_dssp CCTT-CCEECTTTTTTCCCCEEEECTT--CCEECSCTTTTCTTCCEEEECT
T ss_pred CCCc-cccccccccccceeeeeeccce--eeccccchhccccccccccccc
Confidence 6543 3333333222335555555443 3334433355566666665543
No 162
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.30 E-value=0.0063 Score=60.29 Aligned_cols=117 Identities=11% Similarity=0.208 Sum_probs=64.6
Q ss_pred ceEEEeecCCcCCCC--CCCCCCCccEEEccCc---ccccccchhhccCCCccEEEecCCCCCCcCc-cccCCCCCCCEE
Q 037847 208 AKRISLTANGIGSLS--EIPTCPRLVTLLLDGN---RIEEITDGFFQSLSTLRVLSLRGNFPPSTLP-SGISGLVSLHHL 281 (542)
Q Consensus 208 l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~---~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp-~~i~~l~~L~~L 281 (542)
++.+.+.. .++.+. .|.+|.+|+.+.+..+ .++.+....|..+.+|+.+.+..+ +..++ ..+..+.+|+.+
T Consensus 66 L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~aF~~c~~L~~i 142 (394)
T 4gt6_A 66 LTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEIDSEAFHHCEELDTV 142 (394)
T ss_dssp CCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEECTTTTTTCTTCCEE
T ss_pred CEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cceehhhhhhhhcccccc
Confidence 56666653 244443 4677888888877665 355666666777777776665544 33332 235566677777
Q ss_pred eccCCCCCccc-HHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEec
Q 037847 282 DLSSTDITGLP-QELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRL 331 (542)
Q Consensus 282 ~l~~~~i~~lp-~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l 331 (542)
.+..+ +..++ ..+..+.+|+.+.+..+ +..+...++.+ .+|+.+.+
T Consensus 143 ~lp~~-~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~-~~l~~i~i 189 (394)
T 4gt6_A 143 TIPEG-VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTG-TALTQIHI 189 (394)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTT-CCCSEEEE
T ss_pred cccce-eeeecccceecccccccccccce--eeEeccccccc-cceeEEEE
Confidence 76542 33332 23455666666666543 34444433332 34555544
No 163
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.30 E-value=0.0024 Score=63.35 Aligned_cols=106 Identities=12% Similarity=0.194 Sum_probs=73.1
Q ss_pred CCCCC-CccEEEccCcccccccchhhccCCCccEEEecCCC--CCCcCc-cccCCCCCCCEEeccCCCCCcccH-HhhcC
Q 037847 224 IPTCP-RLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNF--PPSTLP-SGISGLVSLHHLDLSSTDITGLPQ-ELKAL 298 (542)
Q Consensus 224 ~~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~lp-~~i~~l~~L~~L~l~~~~i~~lp~-~i~~l 298 (542)
|.+++ .|+.+.+..+ ++.+....|.++.+|+.+.+..+. .+..+. ..|..+..|+.+.+..+ ++.++. .+..+
T Consensus 59 F~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c 136 (394)
T 4gt6_A 59 FCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHC 136 (394)
T ss_dssp TTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTC
T ss_pred ccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhh
Confidence 56664 4888888654 677777888899999999887652 244443 34667777877766543 555543 35678
Q ss_pred CCCCEEeccCCcccCccchhhcCCCCCCcEEeccC
Q 037847 299 EKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCG 333 (542)
Q Consensus 299 ~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~ 333 (542)
.+|+.+.+... ...++...+..+.+|+.+.+..
T Consensus 137 ~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~ 169 (394)
T 4gt6_A 137 EELDTVTIPEG--VTSVADGMFSYCYSLHTVTLPD 169 (394)
T ss_dssp TTCCEEECCTT--CCEECTTTTTTCTTCCEEECCT
T ss_pred cccccccccce--eeeecccceecccccccccccc
Confidence 88998888654 5566666677788888887754
No 164
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.38 E-value=0.035 Score=53.58 Aligned_cols=149 Identities=15% Similarity=0.139 Sum_probs=87.0
Q ss_pred CeeecCCCChhhHHHHHHHHhccccCCCCCCHHHHHHHHHHHhCCChhHHHHHHHHHhcCCChhHHH-HHHHHHhcccCC
Q 037847 4 EKLEVYSLAHDKAWELFQEMVERSTLDSHTSIPELAETLARECGGLPLALKIVGRAMKSQRKVGDWK-RAINKMRTSASK 82 (542)
Q Consensus 4 ~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~kc~GlPlai~~ig~~L~~~~~~~~W~-~~~~~l~~~~~~ 82 (542)
..+++.+|+.+|+.+++...+.......+ .+...+|++.++|.|+++..++..+....+...|- ...+......
T Consensus 196 ~~i~l~pl~~~e~~~~l~~~~~~~~~~~~---~~~~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 270 (350)
T 2qen_A 196 GEVLVKPFDKDTSVEFLKRGFREVNLDVP---ENEIEEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAKGLI-- 270 (350)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTCCCC---HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH--
T ss_pred ceeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHHHHHHH--
Confidence 36899999999999999875422211111 46788999999999999999987654312222221 1111110000
Q ss_pred CCCChHHHHHHHHhhcCCCCchhhhHHHhhhccCCCCcccChHHHHHHHHHc-CCccccchhchHHHHHHHhccccccCC
Q 037847 83 FSGMKEEVFSRLKFSYDSLSTDELRSCLLYCYLYPEDYEIPKRELIDYWISE-GFVYDFDDGCDFIDDLLQACLLEEEGD 161 (542)
Q Consensus 83 ~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~~~~~~Li~~w~a~-g~i~~~~~~~~~~~~L~~~~l~~~~~~ 161 (542)
..++ -.+.++ ++ ..+..+..+|. + .++...+.....+. |-+.. .....+++.|.+.+++....
T Consensus 271 ----~~~l---~~l~~~--~~-~~~~~l~~la~---g-~~~~~~l~~~~~~~~~~~~~-~~~~~~l~~L~~~gli~~~~- 334 (350)
T 2qen_A 271 ----MGEL---EELRRR--SP-RYVDILRAIAL---G-YNRWSLIRDYLAVKGTKIPE-PRLYALLENLKKMNWIVEED- 334 (350)
T ss_dssp ----HHHH---HHHHHH--CH-HHHHHHHHHHT---T-CCSHHHHHHHHHHTTCCCCH-HHHHHHHHHHHHTTSEEEET-
T ss_pred ----HHHH---HHHHhC--Ch-hHHHHHHHHHh---C-CCCHHHHHHHHHHHhCCCCH-HHHHHHHHHHHhCCCEEecC-
Confidence 0011 112222 55 68888888887 3 24455555544322 11121 34567899999999998643
Q ss_pred CeEEe-ehHHHHH
Q 037847 162 DHVKM-HDMIREM 173 (542)
Q Consensus 162 ~~~~m-hdl~~~~ 173 (542)
..|.+ |.++++.
T Consensus 335 ~~y~~~~p~~~~~ 347 (350)
T 2qen_A 335 NTYKIADPVVATV 347 (350)
T ss_dssp TEEEESSHHHHHH
T ss_pred CEEEEecHHHHHH
Confidence 45655 5566554
No 165
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=96.28 E-value=0.049 Score=52.66 Aligned_cols=148 Identities=12% Similarity=0.161 Sum_probs=88.0
Q ss_pred CeeecCCCChhhHHHHHHHHhccccCCCCCCHHHHHHHHHHHhCCChhHHHHHHHHHhcCCChhHHHHHHHHHhcccCCC
Q 037847 4 EKLEVYSLAHDKAWELFQEMVERSTLDSHTSIPELAETLARECGGLPLALKIVGRAMKSQRKVGDWKRAINKMRTSASKF 83 (542)
Q Consensus 4 ~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~kc~GlPlai~~ig~~L~~~~~~~~W~~~~~~l~~~~~~~ 83 (542)
..+++.+|+.+|+.+++...+.... ...+.. .+|+++|+|.|+++..++..+....+...|-. +..+..
T Consensus 202 ~~i~l~~l~~~e~~~~l~~~~~~~~-~~~~~~----~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~--~~~~~~---- 270 (357)
T 2fna_A 202 STVELKPFSREEAIEFLRRGFQEAD-IDFKDY----EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAIN--QTLEYA---- 270 (357)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHHHT-CCCCCH----HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHH--HHHHHH----
T ss_pred ceeecCCCCHHHHHHHHHHHHHHcC-CCCCcH----HHHHHHhCCCHHHHHHHHHHHccccchHHHHH--HHHHHH----
Confidence 4789999999999999988653222 112222 89999999999999999988754233333321 111100
Q ss_pred CCChHHHHHHHH-hhcC--CCCchhhhHHHhhhccCCCCcccChHHHHHHHH-HcCC-ccccchhchHHHHHHHhccccc
Q 037847 84 SGMKEEVFSRLK-FSYD--SLSTDELRSCLLYCYLYPEDYEIPKRELIDYWI-SEGF-VYDFDDGCDFIDDLLQACLLEE 158 (542)
Q Consensus 84 ~~~~~~~~~~l~-~sy~--~L~~~~~k~cfl~~~~fp~~~~~~~~~Li~~w~-a~g~-i~~~~~~~~~~~~L~~~~l~~~ 158 (542)
...+...+. +.++ .+++ ..+..+..+|. +. +...+..... ..|. +.. .....+++.|.+.+++..
T Consensus 271 ---~~~~~~~l~~~~~~~~~l~~-~~~~~l~~la~---g~--~~~~l~~~~~~~~g~~~~~-~~~~~~L~~L~~~gli~~ 340 (357)
T 2fna_A 271 ---KKLILKEFENFLHGREIARK-RYLNIMRTLSK---CG--KWSDVKRALELEEGIEISD-SEIYNYLTQLTKHSWIIK 340 (357)
T ss_dssp ---HHHHHHHHHHHHTTCGGGHH-HHHHHHHHHTT---CB--CHHHHHHHHHHHHCSCCCH-HHHHHHHHHHHHTTSEEE
T ss_pred ---HHHHHHHHHHHhhccccccH-HHHHHHHHHHc---CC--CHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhCCCEEe
Confidence 001111111 2221 5777 78889988887 32 4444443221 1231 221 345678999999999986
Q ss_pred cCCCeEE-eehHHHHH
Q 037847 159 EGDDHVK-MHDMIREM 173 (542)
Q Consensus 159 ~~~~~~~-mhdl~~~~ 173 (542)
.. ..|. .|.++++.
T Consensus 341 ~~-~~y~f~~~~~~~~ 355 (357)
T 2fna_A 341 EG-EKYCPSEPLISLA 355 (357)
T ss_dssp SS-SCEEESSHHHHHH
T ss_pred cC-CEEEecCHHHHHh
Confidence 44 4555 45676654
No 166
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.55 E-value=0.033 Score=54.67 Aligned_cols=104 Identities=13% Similarity=0.239 Sum_probs=50.8
Q ss_pred CCCCCCccEEEccCcccccccchhhccCCCccEEEecCCCCCCcC-ccccCCCCCCCEEeccCCCCCcccH-HhhcCCCC
Q 037847 224 IPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGNFPPSTL-PSGISGLVSLHHLDLSSTDITGLPQ-ELKALEKL 301 (542)
Q Consensus 224 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l-p~~i~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L 301 (542)
+..+.+++.+.+..+ +..+....+..+..|+.+.+..+ +..+ ...+..+.+|+.+.+.. .++.++. .+..+.+|
T Consensus 213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L 288 (379)
T 4h09_A 213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNL 288 (379)
T ss_dssp TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTC
T ss_pred cccccccceeeeccc-eeEEccccccCCccceEEEcCCC--ccEeCccccceeehhccccccc-cceecccccccccccc
Confidence 344555555555433 33344444555566666665543 2222 22344455555555533 2333332 23455556
Q ss_pred CEEeccCCcccCccchhhcCCCCCCcEEecc
Q 037847 302 RYLNLDYAFHLSIIPHQLISCFSKLEVLRLC 332 (542)
Q Consensus 302 ~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~ 332 (542)
+.+.+.++ .+..++..++.++.+|+.+.+.
T Consensus 289 ~~i~l~~~-~i~~I~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 289 TKVVMDNS-AIETLEPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp CEEEECCT-TCCEECTTTTTTCTTCCEEECC
T ss_pred cccccccc-ccceehhhhhcCCCCCCEEEcC
Confidence 66655544 3444554445555566655553
No 167
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.41 E-value=0.019 Score=46.72 Aligned_cols=53 Identities=21% Similarity=0.272 Sum_probs=27.6
Q ss_pred EEeccCCCCC--cccHHhhcCCCCCEEeccCCcccCccchhhcCCCCCCcEEeccCcc
Q 037847 280 HLDLSSTDIT--GLPQELKALEKLRYLNLDYAFHLSIIPHQLISCFSKLEVLRLCGCG 335 (542)
Q Consensus 280 ~L~l~~~~i~--~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~ 335 (542)
.++.++.+++ .+|..+ -.+|++|+|++| .+..+|.+++..+++|+.|++.+|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCC-cCCccChhhhhhccccCEEEecCCC
Confidence 3444444444 454332 224555666555 4555555555555666666665554
No 168
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=94.42 E-value=0.2 Score=49.53 Aligned_cols=139 Identities=12% Similarity=0.008 Sum_probs=81.0
Q ss_pred eecCCCChhhHHHHHHHHhccccCCCCCCHHHHHHHHHHHhC------CChhHHHHHHHHHh------cC--CChhHHHH
Q 037847 6 LEVYSLAHDKAWELFQEMVERSTLDSHTSIPELAETLARECG------GLPLALKIVGRAMK------SQ--RKVGDWKR 71 (542)
Q Consensus 6 ~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~kc~------GlPlai~~ig~~L~------~~--~~~~~W~~ 71 (542)
+++++++.++++++|.+.+.... ....--.+....|+++|+ |.|..+..+..... +. -+.+.+..
T Consensus 210 i~l~~l~~~e~~~ll~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~ 288 (412)
T 1w5s_A 210 LHLPAYKSRELYTILEQRAELGL-RDTVWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRK 288 (412)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHB-CTTSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHH
T ss_pred eeeCCCCHHHHHHHHHHHHHhcC-CCCCCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHH
Confidence 89999999999999987653111 001112467889999999 99976665544321 11 12333333
Q ss_pred HHHHHhcccCCCCCChHHHHHHHHhhcCCCCchhhhHHHhhhccCC--CCcccChHHHHHHHH--H---cCCcccc-chh
Q 037847 72 AINKMRTSASKFSGMKEEVFSRLKFSYDSLSTDELRSCLLYCYLYP--EDYEIPKRELIDYWI--S---EGFVYDF-DDG 143 (542)
Q Consensus 72 ~~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~~~fp--~~~~~~~~~Li~~w~--a---~g~i~~~-~~~ 143 (542)
+..... . ...+.-++..||+ +.+.++..++.+. .+..+...++...+. + .|.-... ...
T Consensus 289 ~~~~~~-----------~-~~~~~~~l~~l~~-~~~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (412)
T 1w5s_A 289 AVSENE-----------A-ASIQTHELEALSI-HELIILRLIAEATLGGMEWINAGLLRQRYEDASLTMYNVKPRGYTQY 355 (412)
T ss_dssp HHHHC------------------CCSSSSSCH-HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSCCCCCCHHHH
T ss_pred HHHHHh-----------c-cchHHHHHHcCCH-HHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcCCCCCCHHHH
Confidence 222110 0 2334557788998 7888888888654 233455555544432 2 2321111 234
Q ss_pred chHHHHHHHhccccc
Q 037847 144 CDFIDDLLQACLLEE 158 (542)
Q Consensus 144 ~~~~~~L~~~~l~~~ 158 (542)
..+++.|...+++..
T Consensus 356 ~~~l~~L~~~gli~~ 370 (412)
T 1w5s_A 356 HIYLKHLTSLGLVDA 370 (412)
T ss_dssp HHHHHHHHHTTSEEE
T ss_pred HHHHHHHHhCCCEEe
Confidence 578999999999976
No 169
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.62 E-value=0.12 Score=41.88 Aligned_cols=52 Identities=25% Similarity=0.394 Sum_probs=28.4
Q ss_pred EEEeecCCcC--CCCCCCCCCCccEEEccCcccccccchhhccCCCccEEEecCC
Q 037847 210 RISLTANGIG--SLSEIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGN 262 (542)
Q Consensus 210 ~l~l~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 262 (542)
.++.+++.++ .+|.- -.++|+.|+|++|.++.++...|..+++|++|+|.+|
T Consensus 12 ~v~Cs~~~L~~~~vP~~-lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTA-FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp EEECCSSCCCTTTSCSC-CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred EEEeCCCCCccccCCCC-CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 3444555554 44421 1134666666666666666655666666666666665
No 170
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=93.22 E-value=0.29 Score=46.56 Aligned_cols=55 Identities=11% Similarity=-0.048 Sum_probs=42.5
Q ss_pred CeeecCCCChhhHHHHHHHHhccccCCCCCCHHHHHHHHHHHhCCChhHHHHHHHHHh
Q 037847 4 EKLEVYSLAHDKAWELFQEMVERSTLDSHTSIPELAETLARECGGLPLALKIVGRAMK 61 (542)
Q Consensus 4 ~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~kc~GlPlai~~ig~~L~ 61 (542)
.++++.+++.+|..+++.+.+.......+ .+....+++++.|.|-.+..+...+.
T Consensus 161 ~~i~l~~~~~~e~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~G~~r~l~~~l~~~~ 215 (324)
T 1hqc_A 161 IVEHLEYYTPEELAQGVMRDARLLGVRIT---EEAALEIGRRSRGTMRVAKRLFRRVR 215 (324)
T ss_dssp CEEECCCCCHHHHHHHHHHHHHTTTCCCC---HHHHHHHHHHSCSCHHHHHHHHHHHT
T ss_pred EEEecCCCCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 47899999999999999988754332222 46788999999999998887766653
No 171
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=92.44 E-value=0.2 Score=43.59 Aligned_cols=117 Identities=15% Similarity=0.148 Sum_probs=61.5
Q ss_pred hccCCCccEEEecCCCCCC-----cCccccCCCCCCCEEeccCCCCCc-----ccHHhhcCCCCCEEeccCCcccC----
Q 037847 248 FQSLSTLRVLSLRGNFPPS-----TLPSGISGLVSLHHLDLSSTDITG-----LPQELKALEKLRYLNLDYAFHLS---- 313 (542)
Q Consensus 248 ~~~l~~L~~L~l~~~~~~~-----~lp~~i~~l~~L~~L~l~~~~i~~-----lp~~i~~l~~L~~L~l~~~~~~~---- 313 (542)
+..-+.|+.|+|+++..+. .+-+.+..-.+|+.|+|++|.|.. +.+.+..=+.|++|+|++|....
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 3344566666666532222 123334455667777777776653 44555556678888887773221
Q ss_pred ccchhhcCCCCCCcEEeccCccc--cccccCCCCccccCCCcchhHhhccccCCceeeeEecch
Q 037847 314 IIPHQLISCFSKLEVLRLCGCGR--FGVIKGKEGNVLCDGAEPLMKELLGLKHLNVLSWSFGSS 375 (542)
Q Consensus 314 ~lp~~~~~~l~~L~~L~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~ 375 (542)
.+-.. +..-+.|++|++++|.. .+. .........+..-+.|..+++.++..
T Consensus 117 ala~a-L~~N~tL~~L~L~n~~~~~ig~----------~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 117 RLLRS-TLVTQSIVEFKADNQRQSVLGN----------QVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHH-TTTTCCCSEEECCCCSSCCCCH----------HHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHH-HhhCCceeEEECCCCcCcCcCH----------HHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 12222 34445688888865421 110 00012333455556777777776553
No 172
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=91.16 E-value=0.23 Score=43.31 Aligned_cols=108 Identities=16% Similarity=0.027 Sum_probs=61.7
Q ss_pred CCCCccEEEccCc-ccccc----cchhhccCCCccEEEecCCCCCC-----cCccccCCCCCCCEEeccCCCCCc-----
Q 037847 226 TCPRLVTLLLDGN-RIEEI----TDGFFQSLSTLRVLSLRGNFPPS-----TLPSGISGLVSLHHLDLSSTDITG----- 290 (542)
Q Consensus 226 ~~~~L~~L~l~~~-~~~~~----~~~~~~~l~~L~~L~l~~~~~~~-----~lp~~i~~l~~L~~L~l~~~~i~~----- 290 (542)
+-+.|+.|+++++ .+... ....+..-..|+.|+|++|. +. .+...+..-..|++|+|+.|.|..
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~-igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCC-CChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 3455667777664 44321 12224556677888887773 32 222333345678888888887764
Q ss_pred ccHHhhcCCCCCEEeccCCcc--cC-----ccchhhcCCCCCCcEEeccCcc
Q 037847 291 LPQELKALEKLRYLNLDYAFH--LS-----IIPHQLISCFSKLEVLRLCGCG 335 (542)
Q Consensus 291 lp~~i~~l~~L~~L~l~~~~~--~~-----~lp~~~~~~l~~L~~L~l~~~~ 335 (542)
+-+.+..=+.|++|+++++.. +. .+... +..-+.|+.|++..+.
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~a-L~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMA-IEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHH-HHHCSSCCEEECCCCC
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHH-HHhCCCcCeEeccCCC
Confidence 344455556788888876522 12 12222 4445678888886554
No 173
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=82.69 E-value=2.4 Score=37.61 Aligned_cols=55 Identities=11% Similarity=0.155 Sum_probs=43.0
Q ss_pred CeeecCCCChhhHHHHHHHHhccccCCCCCCHHHHHHHHHHHhCCChhHHHHHHHHHh
Q 037847 4 EKLEVYSLAHDKAWELFQEMVERSTLDSHTSIPELAETLARECGGLPLALKIVGRAMK 61 (542)
Q Consensus 4 ~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~kc~GlPlai~~ig~~L~ 61 (542)
..+++++++.++.++++.+.+.......+ .+..+.|+++|+|.|..+..+...+.
T Consensus 178 ~~i~l~~l~~~e~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~G~~~~~~~~~~~~~ 232 (250)
T 1njg_A 178 LQFHLKALDVEQIRHQLEHILNEEHIAHE---PRALQLLARAAEGSLRDALSLTDQAI 232 (250)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHTTCCBC---HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhccCCCCCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 46899999999999999998754321122 46678999999999999988776554
No 174
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=74.34 E-value=37 Score=32.42 Aligned_cols=137 Identities=12% Similarity=-0.028 Sum_probs=77.1
Q ss_pred CeeecCCCChhhHHHHHHHHhcc--ccCCCCCCHHHHHHHHHHHhC---CChhHH-HHHHHHH--h---cCCChhHHHHH
Q 037847 4 EKLEVYSLAHDKAWELFQEMVER--STLDSHTSIPELAETLARECG---GLPLAL-KIVGRAM--K---SQRKVGDWKRA 72 (542)
Q Consensus 4 ~~~~l~~L~~~~a~~Lf~~~a~~--~~~~~~~~~~~~~~~i~~kc~---GlPlai-~~ig~~L--~---~~~~~~~W~~~ 72 (542)
..+++++++.++..++|++.+.. .....+ .+..+.|+++|+ |.|..+ ..+-... . ..-+.+.++.+
T Consensus 190 ~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~i~~~~v~~~ 266 (384)
T 2qby_B 190 PSVIFKPYDAEQLKFILSKYAEYGLIKGTYD---DEILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGIIRKEHVDKA 266 (384)
T ss_dssp CEEEECCCCHHHHHHHHHHHHHHTSCTTSCC---SHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSCCCHHHHHHH
T ss_pred CeEEECCCCHHHHHHHHHHHHHhhcccCCcC---HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCccCHHHHHHH
Confidence 37899999999999999998632 111222 355677888887 988744 3333322 1 22567777776
Q ss_pred HHHHhcccCCCCCChHHHHHHHHhhcCCCCchhhhHHHhhhccCCCCcccChHHHHHHHHHcCCcccc-chhchHHHHHH
Q 037847 73 INKMRTSASKFSGMKEEVFSRLKFSYDSLSTDELRSCLLYCYLYPEDYEIPKRELIDYWISEGFVYDF-DDGCDFIDDLL 151 (542)
Q Consensus 73 ~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~~~~~~Li~~w~a~g~i~~~-~~~~~~~~~L~ 151 (542)
++... ...+.-+++.|+. +-|..+...+....+..+. +.....--..|.-+.. ..-..++..|.
T Consensus 267 ~~~~~-------------~~~~~~~~~~l~~-~~~~~l~al~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~l~~L~ 331 (384)
T 2qby_B 267 IVDYE-------------QERLIEAVKALPF-HYKLALRSLIESEDVMSAH-KMYTDLCNKFKQKPLSYRRFSDIISELD 331 (384)
T ss_dssp HHHHH-------------HHHHHHHHHSSCH-HHHHHHHHHHTCCBHHHHH-HHHHHHHHHTTCCCCCHHHHHHHHHHHH
T ss_pred HHHHh-------------cchHHHHHHcCCH-HHHHHHHHHHHhcccChHH-HHHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 65432 1345566778887 5555554444411101111 1111111223311111 34457788999
Q ss_pred Hhccccc
Q 037847 152 QACLLEE 158 (542)
Q Consensus 152 ~~~l~~~ 158 (542)
.++++..
T Consensus 332 ~~gli~~ 338 (384)
T 2qby_B 332 MFGIVKI 338 (384)
T ss_dssp HTTSEEE
T ss_pred hCCCEEE
Confidence 9999986
No 175
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=72.88 E-value=45 Score=31.67 Aligned_cols=138 Identities=10% Similarity=0.033 Sum_probs=77.3
Q ss_pred CeeecCCCChhhHHHHHHHHhcc--ccCCCCCCHHHHHHHHHHHhC---CChhHHH-HHHHHHh-----c--CCChhHHH
Q 037847 4 EKLEVYSLAHDKAWELFQEMVER--STLDSHTSIPELAETLARECG---GLPLALK-IVGRAMK-----S--QRKVGDWK 70 (542)
Q Consensus 4 ~~~~l~~L~~~~a~~Lf~~~a~~--~~~~~~~~~~~~~~~i~~kc~---GlPlai~-~ig~~L~-----~--~~~~~~W~ 70 (542)
..+++++++.++..+++.+.+.. .....++ +..+.++++++ |.|-.+. .+..... + .-+.+.++
T Consensus 194 ~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~ 270 (387)
T 2v1u_A 194 VELVFPPYTAPQLRDILETRAEEAFNPGVLDP---DVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVY 270 (387)
T ss_dssp EECCBCCCCHHHHHHHHHHHHHHHBCTTTBCS---SHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHH
T ss_pred eEEeeCCCCHHHHHHHHHHHHHhhccCCCCCH---HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHH
Confidence 47899999999999999998632 1112232 34667777777 9994333 3222221 1 13566666
Q ss_pred HHHHHHhcccCCCCCChHHHHHHHHhhcCCCCchhhhHHHhhhccCCCC-cccChHHHHHH----HHHcCCcccc-chhc
Q 037847 71 RAINKMRTSASKFSGMKEEVFSRLKFSYDSLSTDELRSCLLYCYLYPED-YEIPKRELIDY----WISEGFVYDF-DDGC 144 (542)
Q Consensus 71 ~~~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~~~fp~~-~~~~~~~Li~~----w~a~g~i~~~-~~~~ 144 (542)
.+++... ...+.-++..++. +-+..+...+....+ ..+...++.+. .-..|.-+.. ....
T Consensus 271 ~a~~~~~-------------~~~~~~~~~~l~~-~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (387)
T 2v1u_A 271 SARAEIE-------------RDRVSEVVRTLPL-HAKLVLLSIMMLEDGGRPASTGEIYERYKELTSTLGLEHVTLRRVS 336 (387)
T ss_dssp HHHHHHH-------------HHHHHHHHHSSCH-HHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHHTTCCCCCHHHHH
T ss_pred HHHHHHh-------------hchHHHHHHcCCH-HHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCCCCCCHHHHH
Confidence 6554432 1235556788887 455554444422222 23434433332 2223421111 3556
Q ss_pred hHHHHHHHhccccc
Q 037847 145 DFIDDLLQACLLEE 158 (542)
Q Consensus 145 ~~~~~L~~~~l~~~ 158 (542)
.+++.|...+++..
T Consensus 337 ~~l~~L~~~gli~~ 350 (387)
T 2v1u_A 337 GIISELDMLGIVKS 350 (387)
T ss_dssp HHHHHHHHTTSEEE
T ss_pred HHHHHHHhCCCeEE
Confidence 78888999998886
No 176
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=64.07 E-value=74 Score=30.04 Aligned_cols=140 Identities=10% Similarity=-0.001 Sum_probs=76.1
Q ss_pred CeeecCCCChhhHHHHHHHHhccccCCCCCCHHHHHHHHHHHhC---CChhHHHHHHHHHh------c--CCChhHHHHH
Q 037847 4 EKLEVYSLAHDKAWELFQEMVERSTLDSHTSIPELAETLARECG---GLPLALKIVGRAMK------S--QRKVGDWKRA 72 (542)
Q Consensus 4 ~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~kc~---GlPlai~~ig~~L~------~--~~~~~~W~~~ 72 (542)
..+++++++.++.++++.+.+.... ....--.+..+.++++++ |.|..+..+..... + .-+.+.++.+
T Consensus 190 ~~i~l~~l~~~~~~~il~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a 268 (386)
T 2qby_A 190 EEIIFPPYNAEELEDILTKRAQMAF-KPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMA 268 (386)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHHHB-CSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHH
T ss_pred eeEEeCCCCHHHHHHHHHHHHHhhc-cCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHH
Confidence 4789999999999999998763211 111222466777888887 99985544332221 1 1355566655
Q ss_pred HHHHhcccCCCCCChHHHHHHHHhhcCCCCchhhhHHHhhhccCCC-C-cccChHHHHHHH----HHcCCcccc-chhch
Q 037847 73 INKMRTSASKFSGMKEEVFSRLKFSYDSLSTDELRSCLLYCYLYPE-D-YEIPKRELIDYW----ISEGFVYDF-DDGCD 145 (542)
Q Consensus 73 ~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~~~fp~-~-~~~~~~~Li~~w----~a~g~i~~~-~~~~~ 145 (542)
++... ...+.-++..+|. ..+..+..++...+ + ..+...++.+.. -..|.-+.. .....
T Consensus 269 ~~~~~-------------~~~~~~~~~~l~~-~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ 334 (386)
T 2qby_A 269 KEEIE-------------RDRVRDIILTLPF-HSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLGVEAVTQRRVSD 334 (386)
T ss_dssp HHHHH-------------HHHHHHHHHTSCH-HHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHTCCCCCHHHHHH
T ss_pred HHHHh-------------hchHHHHHHcCCH-HHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcCCCCCCHHHHHH
Confidence 44322 2345556777887 55555555553222 1 112232222211 112311111 23456
Q ss_pred HHHHHHHhccccc
Q 037847 146 FIDDLLQACLLEE 158 (542)
Q Consensus 146 ~~~~L~~~~l~~~ 158 (542)
+++.|...+++..
T Consensus 335 ~l~~L~~~gli~~ 347 (386)
T 2qby_A 335 IINELDMVGILTA 347 (386)
T ss_dssp HHHHHHHHTSEEE
T ss_pred HHHHHHhCCCEEE
Confidence 7888899998865
No 177
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=54.27 E-value=54 Score=31.22 Aligned_cols=140 Identities=9% Similarity=0.003 Sum_probs=76.2
Q ss_pred CeeecCCCChhhHHHHHHHHhccccCCCCCCHHHHHHHHHHHh---------CCChhHHHHHHHHHh------cC--CCh
Q 037847 4 EKLEVYSLAHDKAWELFQEMVERSTLDSHTSIPELAETLAREC---------GGLPLALKIVGRAMK------SQ--RKV 66 (542)
Q Consensus 4 ~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~kc---------~GlPlai~~ig~~L~------~~--~~~ 66 (542)
..+++.+++.++..+++.+.+.... ....--.+..+.|++++ .|.|..+..+..... +. -+.
T Consensus 186 ~~i~~~pl~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~ 264 (389)
T 1fnn_A 186 YVIRFSPYTKDQIFDILLDRAKAGL-AEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAP 264 (389)
T ss_dssp CEEECCCCBHHHHHHHHHHHHHHHB-CTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCH
T ss_pred ceEEeCCCCHHHHHHHHHHHHHhhc-CCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCH
Confidence 3689999999999999999864211 00111246788999999 788765544433221 11 222
Q ss_pred hHHHHHHHHHhcccCCCCCChHHHHHHHHhhcCCCCchhhhHHHhhhccCC---CCcccChHHHHHHHHH----cCCccc
Q 037847 67 GDWKRAINKMRTSASKFSGMKEEVFSRLKFSYDSLSTDELRSCLLYCYLYP---EDYEIPKRELIDYWIS----EGFVYD 139 (542)
Q Consensus 67 ~~W~~~~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~~~fp---~~~~~~~~~Li~~w~a----~g~i~~ 139 (542)
+.-..+...... . .+.-.+..|+. +.+.++..++.+. .+..+...++...+.. .|..+.
T Consensus 265 ~~v~~~~~~~~~---~----------~~~~~l~~l~~-~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 330 (389)
T 1fnn_A 265 EDVRKSSKEVLF---G----------ISEEVLIGLPL-HEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYGERPR 330 (389)
T ss_dssp HHHHHHHHHHSC---C----------CCHHHHHHSCH-HHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHhh---h----------hHHHHHHcCCH-HHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHcCCCCC
Confidence 333332222211 1 01112445666 5566665555443 2224455555554433 232221
Q ss_pred c-chhchHHHHHHHhccccc
Q 037847 140 F-DDGCDFIDDLLQACLLEE 158 (542)
Q Consensus 140 ~-~~~~~~~~~L~~~~l~~~ 158 (542)
. ..-..++.+|..++++..
T Consensus 331 ~~~~~~~~l~~L~~~gli~~ 350 (389)
T 1fnn_A 331 VHSQLWSYLNDLREKGIVET 350 (389)
T ss_dssp CHHHHHHHHHHHHHTTSSEE
T ss_pred CHHHHHHHHHHHHhCCCeEE
Confidence 1 334577889999999987
No 178
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=52.37 E-value=28 Score=29.85 Aligned_cols=54 Identities=11% Similarity=0.027 Sum_probs=40.2
Q ss_pred eeecCCCChhhHHHHHHHHhccccCCCCCCHHHHHHHHHHHhCCChhHHHHHHHHHh
Q 037847 5 KLEVYSLAHDKAWELFQEMVERSTLDSHTSIPELAETLARECGGLPLALKIVGRAMK 61 (542)
Q Consensus 5 ~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~kc~GlPlai~~ig~~L~ 61 (542)
.+++.+++.++..+++.+.+.......+ .+..+.+++.++|.|..+..+...+.
T Consensus 155 ~i~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~g~~r~l~~~l~~~~ 208 (226)
T 2chg_A 155 VFRFKPVPKEAMKKRLLEICEKEGVKIT---EDGLEALIYISGGDFRKAINALQGAA 208 (226)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHTCCBC---HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred eeecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 6889999999999999998754321112 36678899999999997666555443
No 179
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=47.29 E-value=51 Score=24.86 Aligned_cols=65 Identities=18% Similarity=0.237 Sum_probs=45.9
Q ss_pred hHHHHHHH--HhccccCCCCCCHHHHHHHHHHHhCCChhHHHHHHHHHhcC-CChhHHHHHHHHHhcc
Q 037847 15 KAWELFQE--MVERSTLDSHTSIPELAETLARECGGLPLALKIVGRAMKSQ-RKVGDWKRAINKMRTS 79 (542)
Q Consensus 15 ~a~~Lf~~--~a~~~~~~~~~~~~~~~~~i~~kc~GlPlai~~ig~~L~~~-~~~~~W~~~~~~l~~~ 79 (542)
|.|++=+. ..|+.+.-+.|....-+-+..++..-.|+|+.++-+.=... ...+.|..+++.++-.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lqElkPt 92 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQELRPT 92 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHHHHhhH
Confidence 66776443 23666666777777778888888899999999887764433 3344599888876643
No 180
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=37.24 E-value=79 Score=25.25 Aligned_cols=66 Identities=18% Similarity=0.227 Sum_probs=45.5
Q ss_pred hHHHHHHH--HhccccCCCCCCHHHHHHHHHHHhCCChhHHHHHHHHHhcC-CChhHHHHHHHHHhccc
Q 037847 15 KAWELFQE--MVERSTLDSHTSIPELAETLARECGGLPLALKIVGRAMKSQ-RKVGDWKRAINKMRTSA 80 (542)
Q Consensus 15 ~a~~Lf~~--~a~~~~~~~~~~~~~~~~~i~~kc~GlPlai~~ig~~L~~~-~~~~~W~~~~~~l~~~~ 80 (542)
|.|++=+. ..|+.+.-++|...+-+-+..++..-.|+|+.++=+.=... ...+.|..+++.++-..
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lqElkPtl 136 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQELRPTL 136 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHHHHhhHH
Confidence 56666443 24666666667777778888888899999999886654333 34455998888766543
No 181
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=34.30 E-value=70 Score=29.37 Aligned_cols=50 Identities=8% Similarity=0.014 Sum_probs=37.1
Q ss_pred CeeecCCCChhhHHHHHHHHhccccCCCCCCHHHHHHHHHHHhCCChhHHHHH
Q 037847 4 EKLEVYSLAHDKAWELFQEMVERSTLDSHTSIPELAETLARECGGLPLALKIV 56 (542)
Q Consensus 4 ~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~kc~GlPlai~~i 56 (542)
..+++.++++++..+++.+.+...+...+ .+....|++.|+|.|..+..+
T Consensus 159 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~G~~r~a~~~ 208 (323)
T 1sxj_B 159 AILRYSKLSDEDVLKRLLQIIKLEDVKYT---NDGLEAIIFTAEGDMRQAINN 208 (323)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHTCCBC---HHHHHHHHHHHTTCHHHHHHH
T ss_pred eEEeecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 36899999999999999998743321122 366789999999999655443
No 182
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=31.89 E-value=48 Score=24.76 Aligned_cols=19 Identities=11% Similarity=0.399 Sum_probs=7.7
Q ss_pred ccchhhccCCCccEEEecC
Q 037847 243 ITDGFFQSLSTLRVLSLRG 261 (542)
Q Consensus 243 ~~~~~~~~l~~L~~L~l~~ 261 (542)
+....|.++..|+.+.+-.
T Consensus 11 I~~~aF~~c~~L~~i~iP~ 29 (100)
T 2lz0_A 11 MDKSLFAGNTVIREITVQP 29 (100)
T ss_dssp SCSCTTTTCTTCCCEEECT
T ss_pred ecHHHhcCCCCCcEEEcCC
Confidence 3333344444444444433
No 183
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=30.58 E-value=1.1e+02 Score=27.91 Aligned_cols=55 Identities=11% Similarity=0.013 Sum_probs=40.9
Q ss_pred eeecCCCChhhHHHHHHHHhccccCCCCCCHHHHHHHHHHHhCCChhHHHHHHHHHhc
Q 037847 5 KLEVYSLAHDKAWELFQEMVERSTLDSHTSIPELAETLARECGGLPLALKIVGRAMKS 62 (542)
Q Consensus 5 ~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~kc~GlPlai~~ig~~L~~ 62 (542)
.+++.++++++..+++.+.+.......+ .+....|++.++|.|..+..+...+..
T Consensus 163 ~~~~~~l~~~~~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~g~~r~~~~~l~~~~~ 217 (327)
T 1iqp_A 163 IFRFRPLRDEDIAKRLRYIAENEGLELT---EEGLQAILYIAEGDMRRAINILQAAAA 217 (327)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTTCEEC---HHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred EEEecCCCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHCCCCHHHHHHHHHHHHh
Confidence 5789999999999999988753321122 366788999999999987766655543
No 184
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=29.39 E-value=2.7e+02 Score=25.80 Aligned_cols=50 Identities=16% Similarity=0.125 Sum_probs=36.8
Q ss_pred eeecCCCChhhHHHHHHHHhccccCCCCCCHHHHHHHHHHHhCCChhHHHHHH
Q 037847 5 KLEVYSLAHDKAWELFQEMVERSTLDSHTSIPELAETLARECGGLPLALKIVG 57 (542)
Q Consensus 5 ~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~kc~GlPlai~~ig 57 (542)
.+.+++.+.++-.+++++.+...... .-.+.+..|+++++|.|-.+..+-
T Consensus 174 ~~~Ld~~~~~~l~~iL~~~~~~~~~~---~~~~~~~~ia~~~~G~~R~a~~ll 223 (334)
T 1in4_A 174 ILELDFYTVKELKEIIKRAASLMDVE---IEDAAAEMIAKRSRGTPRIAIRLT 223 (334)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHTTCC---BCHHHHHHHHHTSTTCHHHHHHHH
T ss_pred eeeCCCCCHHHHHHHHHHHHHHcCCC---cCHHHHHHHHHhcCCChHHHHHHH
Confidence 47899999999999999887422211 124678999999999997665443
No 185
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=27.47 E-value=56 Score=24.37 Aligned_cols=39 Identities=23% Similarity=0.338 Sum_probs=31.5
Q ss_pred CCCCCCCccEEEccCcccccccchhhccCCCccEEEecCC
Q 037847 223 EIPTCPRLVTLLLDGNRIEEITDGFFQSLSTLRVLSLRGN 262 (542)
Q Consensus 223 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 262 (542)
.|.+|..|+.+.+..+ ++.+....|.++.+|+.+.+.+.
T Consensus 15 aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 15 LFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp TTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred HhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 4788999999988765 66677777889999998888765
No 186
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=26.94 E-value=1.4e+02 Score=25.61 Aligned_cols=53 Identities=11% Similarity=0.001 Sum_probs=39.2
Q ss_pred CeeecCCCChhhHHHHHHHHhccccCCCCCCHHHHHHHHHHHhCCChhHHHHHHHH
Q 037847 4 EKLEVYSLAHDKAWELFQEMVERSTLDSHTSIPELAETLARECGGLPLALKIVGRA 59 (542)
Q Consensus 4 ~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~i~~kc~GlPlai~~ig~~ 59 (542)
.++++.+++.++..+++.+.+.......+ .+..+.+++.+.|.+-.+..+-..
T Consensus 167 ~~i~l~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~g~~r~l~~~l~~ 219 (242)
T 3bos_A 167 LTYQLQPMMDDEKLAALQRRAAMRGLQLP---EDVGRFLLNRMARDLRTLFDVLDR 219 (242)
T ss_dssp EEEECCCCCGGGHHHHHHHHHHHTTCCCC---HHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred ceEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHccCCHHHHHHHHHH
Confidence 57899999999999999988743321222 467788999999988777654443
No 187
>1utg_A Uteroglobin; steroid binding; 1.34A {Oryctolagus cuniculus} SCOP: a.101.1.1 PDB: 2utg_A
Probab=23.38 E-value=1.4e+02 Score=20.52 Aligned_cols=27 Identities=7% Similarity=0.235 Sum_probs=21.2
Q ss_pred CCChhHHHHHHHHHhcCCChhHHHHHHHH
Q 037847 47 GGLPLALKIVGRAMKSQRKVGDWKRAINK 75 (542)
Q Consensus 47 ~GlPlai~~ig~~L~~~~~~~~W~~~~~~ 75 (542)
+|.|....++..+|.+ +.++.+..++.
T Consensus 1 ~~Cpal~~~v~~~l~~--s~~~Y~~~l~~ 27 (70)
T 1utg_A 1 GICPRFAHVIENLLLG--TPSSYETSLKE 27 (70)
T ss_dssp CCCHHHHHHHHHHHHS--CHHHHHHHHHT
T ss_pred CCchhHHHHHHHHhcC--CHHHHHHHHHh
Confidence 5889999999999988 67776665443
Done!