Query 037848
Match_columns 643
No_of_seqs 187 out of 291
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 04:58:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037848.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037848hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03181 BURP: BURP domain; I 100.0 4.1E-74 9E-79 569.1 19.5 196 443-642 1-216 (216)
2 KOG0022 Alcohol dehydrogenase, 53.8 10 0.00023 41.7 2.8 30 579-616 30-59 (375)
3 PF13079 DUF3916: Protein of u 24.6 51 0.0011 32.7 2.1 70 73-146 9-82 (153)
4 PF06890 Phage_Mu_Gp45: Bacter 21.9 2E+02 0.0044 28.6 5.7 52 576-642 43-94 (162)
5 PF15183 MRAP: Melanocortin-2 14.2 1.5E+02 0.0033 27.1 2.5 43 36-79 41-83 (90)
6 KOG2423 Nucleolar GTPase [Gene 13.7 1.1E+02 0.0024 35.1 1.9 27 481-507 285-344 (572)
7 smart00167 VPS9 Domain present 13.6 70 0.0015 30.0 0.3 33 496-528 76-108 (117)
8 PF10961 DUF2763: Protein of u 13.6 1.3E+02 0.0029 27.2 2.1 24 28-51 14-37 (91)
9 COG1062 AdhC Zn-dependent alco 12.4 2.4E+02 0.0052 31.7 3.9 33 578-610 14-48 (366)
10 COG4384 Mu-like prophage prote 10.5 3.1E+02 0.0067 28.4 3.7 53 562-630 53-105 (203)
No 1
>PF03181 BURP: BURP domain; InterPro: IPR004873 The BURP domain is a ~230-residue module, which has been named for the four members of the group initially identified, BNM2, USP, RD22, and PG1beta. It is found in the C-terminal part of a number of plant cell wall proteins, which are defined not only by the BURP domain, but also by the overall similarity in their modular construction. The BURP domain proteins consists of either three or four modules: (i) an N-terminal hydrophobic domain - a presumptive transit peptide, joined to (ii) a short conserved segment or other short segment, (iii) an optional segment consisting of repeated units which is unique to each member, and (iv) the C-terminal BURP domain. Although the BURP domain proteins share primary structural features, their expression patterns and the conditions under which they are expressed differ. The presence of the conserved BURP domain in diverse plant proteins suggests an important and fundamental functional role for this domain []. It is possible that the BURP domain represents a general motif for localization of proteins within the cell wall matrix. The other structural domains associated with the BURP domain may specify other target sites for intermolecular interactions []. Some proteins known to contain a BURP domain are listed below [, , ]: Brassica protein BNM2, which is expressed during the induction of microspore embryogenesis. Field bean USPs, abundant non-storage seed proteins with unknown function. Soybean USP-like proteins ADR6 (or SALI5-4A), an auxin-repressible, aluminium-inducible protein and SALI3-2, a protein that is up-regulated by aluminium. Soybean seed coat BURP-domain protein 1 (SCB1). It might play a role in the differentiation of the seed coat parenchyma cells. Arabidopsis RD22 drought induced protein. Maize ZRP2, a protein of unknown function in cortex parenchyma. Tomato PG1beta, the beta-subunit of polygalacturonase isozyme 1 (PG1), which is expressed in ripening fruits. Cereal RAFTIN. It is essential specifically for the maturation phase of pollen development.
Probab=100.00 E-value=4.1e-74 Score=569.14 Aligned_cols=196 Identities=41% Similarity=0.791 Sum_probs=182.8
Q ss_pred CCCccccCCCCCceeecCCCC-CCCCCCccccccccCCCCCCchhHHHhhhhhc-----------------ccCCCCCCC
Q 037848 443 GKFFRESMLKQGNVMVMPDIR-DKMPRRSFLPRSISSKLPFATSQLTQLKEIFR-----------------CERAPSPGE 504 (643)
Q Consensus 443 g~FF~E~dL~~G~~M~l~~i~-d~~p~~~FLPR~vAdsIPFSs~kL~eIL~~Fs-----------------CE~ppi~GE 504 (643)
.+||+|+||+||++|+|++.. +..+.++||||++|++||||+++|++||++|+ ||.+|++||
T Consensus 1 ~~fF~e~dL~~G~~m~l~f~~~~~~~~~~fLpr~~A~siPfss~~l~~iL~~Fsi~~~S~~A~~m~~Tl~~Ce~~~~~GE 80 (216)
T PF03181_consen 1 ALFFLEKDLHPGKKMPLYFPKSDNSAKRPFLPRQVADSIPFSSSKLPEILQMFSIPPGSPMAKAMKNTLEECESPPIKGE 80 (216)
T ss_pred CcccCHHHCCCCceeeecCCCCCCCcccccCCHHHhccCCcCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCCc
Confidence 479999999999999987643 33367899999999999999999999999999 999999999
Q ss_pred cccccCchhHHHHHHHhhcCC-ccEEEEecccC-CCcceEEEeeeeeecCCcccceeeeccccCceEeEEeeecCceEEE
Q 037848 505 TKRCVGSVEDMIDFATSVLGR-NVVARTTQNAN-GSKRRVTISSVSGINGGKVTKSVSCHQSLYPYLLYYCHSVPKVRVY 582 (643)
Q Consensus 505 tK~CATSLESMvDFa~S~LG~-nv~~~sT~~~~-~s~q~~~V~~Vk~I~gg~~~k~V~CH~~~YPYaVyYCH~v~~TrvY 582 (643)
+|+|||||||||||++|+||+ ++++++|+... ...|+|+|++|++|.++ +++|+||+|+|||+|||||.++.||||
T Consensus 81 ~k~CaTSLESMvdF~~s~LG~~~v~a~st~~~~~~~~~~y~V~~v~~i~~~--~~~V~CH~~~yPYaVyyCH~~~~t~~y 158 (216)
T PF03181_consen 81 TKYCATSLESMVDFAVSKLGTRNVRALSTEVPKSTPLQNYTVEGVKKIGGG--DKSVVCHKMPYPYAVYYCHSIPPTRVY 158 (216)
T ss_pred CccCcCCHHHHHHHHHHhcCCCccEEEeccccCCCCCccEEEEeeeeecCC--CceEEEcccCCceeEEEeeecCceeEE
Confidence 999999999999999999999 79999998876 56789999999999863 689999999999999999999999999
Q ss_pred EEEEeeccCccceeeEEEEeeccCCCCCCCchhhhhcCCCCCCcceeeeeeCCceEEeec
Q 037848 583 EADVLDVVSNAKINHGVAICHIDTSSWSPGHGAFVALGSGPGQIEVCHWIFENDMTWTSA 642 (643)
Q Consensus 583 ~V~L~g~d~~~ki~~AVAVCHlDTS~WnP~H~AF~~LgvKPG~~pVCHfi~~~~ivWvpa 642 (643)
+|+|+++|++ +++||||||+|||.|||+|+||++||+|||++||||||++++|||||.
T Consensus 159 ~V~l~g~dg~--~~~avavCH~DTS~W~p~h~aF~~L~vkPG~~~VCHf~~~~~ivWv~~ 216 (216)
T PF03181_consen 159 MVPLVGEDGT--KVEAVAVCHLDTSGWNPDHPAFQVLGVKPGTVPVCHFLPNDHIVWVPN 216 (216)
T ss_pred EEEEeecCCc--eEEEEEEEecCCCCCCcchHHHHHhCCCCCCcceEEEeeCCeEEEccC
Confidence 9999999986 468999999999999999999999999999999999999999999983
No 2
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=53.76 E-value=10 Score=41.67 Aligned_cols=30 Identities=27% Similarity=0.460 Sum_probs=22.4
Q ss_pred eEEEEEEEeeccCccceeeEEEEeeccCCCCCCCchhh
Q 037848 579 VRVYEADVLDVVSNAKINHGVAICHIDTSSWSPGHGAF 616 (643)
Q Consensus 579 TrvY~V~L~g~d~~~ki~~AVAVCHlDTS~WnP~H~AF 616 (643)
-+++||.+ || .+.+|||+|..-|+-.++.+
T Consensus 30 Pka~EVRI-------KI-~~t~vCHTD~~~~~g~~~~~ 59 (375)
T KOG0022|consen 30 PKAHEVRI-------KI-LATGVCHTDAYVWSGKDPEG 59 (375)
T ss_pred CCCceEEE-------EE-EEEeeccccceeecCCCccc
Confidence 36677766 34 58999999999999765443
No 3
>PF13079 DUF3916: Protein of unknown function (DUF3916)
Probab=24.64 E-value=51 Score=32.68 Aligned_cols=70 Identities=20% Similarity=0.266 Sum_probs=52.1
Q ss_pred CCCCCcccccccccccCCCCCCCCcchhhccCCCCchhhHhHHhhh--hhcccccccc--cccccccccccccccCcc
Q 037848 73 GNPYTAKASLIRYWNNHISNNLPKPEFILSKASPLNAIHLAKLTIL--AAQNTLSSHL--PAFCSLANLICTLEFDDQ 146 (643)
Q Consensus 73 ~~pft~ka~~~ryw~~~~~~~~p~~~f~~~k~spl~~~~~a~~~~l--~~~~~l~~~~--~~~c~~a~l~c~~~~~~~ 146 (643)
.++|..+...-+|||=+||-. ++|+-+|..|.. +..+-+-.| |+++-+..+- -..|--.-|+|.|++-.|
T Consensus 9 t~~~p~~~~~~~YW~~kiPv~---~~fi~s~~t~~~-vkr~c~Q~LIn~a~~Li~~kp~~~~~yRV~~~I~lp~L~~S 82 (153)
T PF13079_consen 9 TPSFPSTFYNDGYWNWKIPVS---QSFIESKKTPRK-VKRLCIQTLINAAEHLIQAKPDDENTYRVVCLISLPDLFNS 82 (153)
T ss_pred CCCCCCcccCCcceeEecccC---HHHHhccCCcHH-HHHHHHHHHHHHHHHHHhCCcCcCCceEEEEEEEcchhhhc
Confidence 478888888889999999864 788899999864 555566666 4555555553 348888899999998655
No 4
>PF06890 Phage_Mu_Gp45: Bacteriophage Mu Gp45 protein; InterPro: IPR014462 This entry is represented by the Bacteriophage Mu, Gp45. The characteristics of the protein distribution suggest prophage matches.
Probab=21.93 E-value=2e+02 Score=28.60 Aligned_cols=52 Identities=19% Similarity=0.153 Sum_probs=37.7
Q ss_pred cCceEEEEEEEeeccCccceeeEEEEeeccCCCCCCCchhhhhcCCCCCCcceeeeeeCCceEEeec
Q 037848 576 VPKVRVYEADVLDVVSNAKINHGVAICHIDTSSWSPGHGAFVALGSGPGQIEVCHWIFENDMTWTSA 642 (643)
Q Consensus 576 v~~TrvY~V~L~g~d~~~ki~~AVAVCHlDTS~WnP~H~AF~~LgvKPG~~pVCHfi~~~~ivWvpa 642 (643)
++.+.++.+.|-|.- .+.|+||-- |..+++-+++||+ ||=|=.+++.||+..
T Consensus 43 p~Ga~~vvl~lGG~r-----s~~Vvia~~--------d~~yR~~~L~~GE--valY~~~G~~I~L~~ 94 (162)
T PF06890_consen 43 PPGAEAVVLFLGGDR-----SHGVVIAVE--------DRRYRPKGLKPGE--VALYDDEGQKIHLKR 94 (162)
T ss_pred CCCCeEEEEEeccCC-----cceEEEEeC--------CccccccCCCCCc--EEEEcCCCCEEEEEe
Confidence 347888888885422 356777753 5577888889996 666668999999864
No 5
>PF15183 MRAP: Melanocortin-2 receptor accessory protein family
Probab=14.19 E-value=1.5e+02 Score=27.07 Aligned_cols=43 Identities=23% Similarity=0.238 Sum_probs=21.7
Q ss_pred HHhhhhHHHHHHHHHhcCCCceeeecccccCCCCCCCCCCCCcc
Q 037848 36 TMTMSTIFFFIFLFLSTSPLNVSCERVTNRVSSTSTGGNPYTAK 79 (643)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pft~k 79 (643)
.-.+|..+|.++|||.++...-..+- ....+++....+|+..+
T Consensus 41 ~FWv~LA~FV~~lF~iL~~ms~sgsp-q~~~~~k~~~~~p~~~~ 83 (90)
T PF15183_consen 41 AFWVSLAAFVVFLFLILLYMSWSGSP-QMRNSEKHHPMCPWSHS 83 (90)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccCCC-CcCCccccCCCCCcccc
Confidence 34566677777777755433322221 22333444456666543
No 6
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=13.73 E-value=1.1e+02 Score=35.10 Aligned_cols=27 Identities=48% Similarity=0.759 Sum_probs=22.8
Q ss_pred CCCchhHHHhhhhhc---------------------------------ccCCCCCCCccc
Q 037848 481 PFATSQLTQLKEIFR---------------------------------CERAPSPGETKR 507 (643)
Q Consensus 481 PFSs~kL~eIL~~Fs---------------------------------CE~ppi~GEtK~ 507 (643)
||....|-.||+.|+ |..+||.||||-
T Consensus 285 sfGKgalI~llRQf~kLh~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKV 344 (572)
T KOG2423|consen 285 SFGKGALIQLLRQFAKLHSDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKV 344 (572)
T ss_pred ccchhHHHHHHHHHHhhccCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchH
Confidence 577777888888887 999999999974
No 7
>smart00167 VPS9 Domain present in VPS9. Domain present in yeast vacuolar sorting protein 9 and other proteins.
Probab=13.63 E-value=70 Score=29.97 Aligned_cols=33 Identities=12% Similarity=0.143 Sum_probs=26.8
Q ss_pred ccCCCCCCCcccccCchhHHHHHHHhhcCCccE
Q 037848 496 CERAPSPGETKRCVGSVEDMIDFATSVLGRNVV 528 (643)
Q Consensus 496 CE~ppi~GEtK~CATSLESMvDFa~S~LG~nv~ 528 (643)
|......||.-+|.|++|+-++|..+....+..
T Consensus 76 ~~~~~l~gE~gY~lT~l~aAv~fi~~l~~~~l~ 108 (117)
T smart00167 76 LEPSLLTGEGGYYLTSLSAALALIKGLTEAHAL 108 (117)
T ss_pred CCccccccHHHHHHHHHHHHHHHHHHCCHHhCC
Confidence 444457999999999999999999988765543
No 8
>PF10961 DUF2763: Protein of unknown function (DUF2763); InterPro: IPR024491 This entry represents an eukaryotic family of selenoproteins. It includes SelK, which seems to play an important role in protecting cells from endoplasmic reticulum stress-induced apoptosis [] and SelG, which may be involved in regulating the redox state of the cell [].
Probab=13.62 E-value=1.3e+02 Score=27.18 Aligned_cols=24 Identities=29% Similarity=0.292 Sum_probs=18.5
Q ss_pred eeeehHHHHHhhhhHHHHHHHHHh
Q 037848 28 SLIDTQEVTMTMSTIFFFIFLFLS 51 (643)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~ 51 (643)
+.-+.+-|+.++-.|+.||.|||.
T Consensus 14 spWrls~I~d~Fwgi~~fI~lFF~ 37 (91)
T PF10961_consen 14 SPWRLSRITDFFWGIINFIVLFFQ 37 (91)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHH
Confidence 445556788888889989998884
No 9
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=12.37 E-value=2.4e+02 Score=31.70 Aligned_cols=33 Identities=18% Similarity=0.328 Sum_probs=20.5
Q ss_pred ceEEEEEEEeeccCccce--eeEEEEeeccCCCCC
Q 037848 578 KVRVYEADVLDVVSNAKI--NHGVAICHIDTSSWS 610 (643)
Q Consensus 578 ~TrvY~V~L~g~d~~~ki--~~AVAVCHlDTS~Wn 610 (643)
+-.+-+|+|..+.-++.. ++|-.|||+|-.--+
T Consensus 14 Pl~i~ei~l~~P~~gEVlVri~AtGVCHTD~~~~~ 48 (366)
T COG1062 14 PLEIEEVDLDPPRAGEVLVRITATGVCHTDAHTLS 48 (366)
T ss_pred CeEEEEEecCCCCCCeEEEEEEEeeccccchhhhc
Confidence 345566666665533321 268899999976544
No 10
>COG4384 Mu-like prophage protein gp45 [Function unknown]
Probab=10.47 E-value=3.1e+02 Score=28.42 Aligned_cols=53 Identities=17% Similarity=0.263 Sum_probs=38.5
Q ss_pred ccccCceEeEEeeecCceEEEEEEEeeccCccceeeEEEEeeccCCCCCCCchhhhhcCCCCCCcceee
Q 037848 562 HQSLYPYLLYYCHSVPKVRVYEADVLDVVSNAKINHGVAICHIDTSSWSPGHGAFVALGSGPGQIEVCH 630 (643)
Q Consensus 562 H~~~YPYaVyYCH~v~~TrvY~V~L~g~d~~~ki~~AVAVCHlDTS~WnP~H~AF~~LgvKPG~~pVCH 630 (643)
|.+.|- |+-|-.....++.|+|-| +..++|+||- .|++.+..|+++|+.-|-|
T Consensus 53 r~q~yG---f~S~ppaGse~vvv~lGG-----~rShgviv~~--------~~~syR~~GL~aGeT~iY~ 105 (203)
T COG4384 53 RLQEYG---FASVPPAGSEAVVVPLGG-----KRSHGVIVVS--------QHGSYRITGLKAGETVIYN 105 (203)
T ss_pred HHHhcC---cccCCCCCCeEEEEecCC-----ccceeEEEEe--------cCCccccccccCCceEEEe
Confidence 556665 344445577888888843 2247898985 4889999999999988776
Done!