Query 037848
Match_columns 643
No_of_seqs 187 out of 291
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 07:54:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037848.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037848hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zqu_A Probable aromatic acid 14.3 1.2E+02 0.0039 29.7 3.5 48 471-523 136-186 (209)
2 3pqh_A Gene product 138; beta- 9.1 1.8E+02 0.0063 26.8 2.8 36 596-642 19-54 (127)
3 1obb_A Maltase, alpha-glucosid 7.7 1.1E+02 0.0039 33.3 1.0 40 597-641 169-208 (480)
4 2jy0_A Protease NS2-3; membran 7.7 2E+02 0.007 20.1 1.9 23 33-55 3-25 (27)
5 2dnf_A Doublecortin domain-con 5.3 4.6E+02 0.016 22.9 3.4 51 508-566 38-91 (108)
6 1fr3_A MOP, molybdate/tungstat 5.1 3.8E+02 0.013 19.9 2.4 25 615-640 42-66 (67)
7 2ejb_A Probable aromatic acid 4.9 3.7E+02 0.013 25.6 2.7 25 498-523 149-173 (189)
8 2liy_A Epidermal patterning fa 4.7 6.5E+02 0.022 19.3 3.3 27 578-604 19-45 (45)
9 1kg1_A NIP1, necrosis inducing 3.8 2.8E+02 0.0097 21.9 0.8 9 305-313 42-50 (60)
10 2efe_A Similarity to vacuolar 3.8 1.7E+02 0.0059 29.1 -0.7 27 496-522 216-242 (267)
No 1
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=14.35 E-value=1.2e+02 Score=29.74 Aligned_cols=48 Identities=27% Similarity=0.514 Sum_probs=33.5
Q ss_pred cccccccCCCCCCchhHHHhhhhhc--c-cCCCCCCCcccccCchhHHHHHHHhhc
Q 037848 471 FLPRSISSKLPFATSQLTQLKEIFR--C-ERAPSPGETKRCVGSVEDMIDFATSVL 523 (643)
Q Consensus 471 FLPR~vAdsIPFSs~kL~eIL~~Fs--C-E~ppi~GEtK~CATSLESMvDFa~S~L 523 (643)
+.|| .+|.+.--+..|+++-. + --||..|. -.+..|+|+|+||++.++
T Consensus 136 l~Pa----em~~~~~~~~Nm~~L~~~G~~iipp~~g~-ya~p~~iediv~~vv~r~ 186 (209)
T 3zqu_A 136 LVPR----EAPFSSIHLENMLKLSNLGAVILPAAPGF-YHQPQSVEDLVDFVVARI 186 (209)
T ss_dssp EEEC----CSSCCHHHHHHHHHHHHHTCEECCSCCCC-TTCCCSHHHHHHHHHHHH
T ss_pred EEEc----ccccCHHHHHHHHHHHHCCCEEeCCCccc-ccCCCCHHHHHHHHHHHH
Confidence 4466 67777666665544433 2 34777887 579999999999998764
No 2
>3pqh_A Gene product 138; beta-helix, OB-fold, phage baseplate, iron-binding, cell MEM piercing, viral protein; 1.29A {Bacteriophage PHI92}
Probab=9.12 E-value=1.8e+02 Score=26.82 Aligned_cols=36 Identities=8% Similarity=0.133 Sum_probs=27.6
Q ss_pred eeEEEEeeccCCCCCCCchhhhhcCCCCCCcceeeeeeCCceEEeec
Q 037848 596 NHGVAICHIDTSSWSPGHGAFVALGSGPGQIEVCHWIFENDMTWTSA 642 (643)
Q Consensus 596 ~~AVAVCHlDTS~WnP~H~AF~~LgvKPG~~pVCHfi~~~~ivWvpa 642 (643)
.++|+||.- |..+++-++ ||+ ||=+-.+++.||+..
T Consensus 19 S~gVvIa~~--------d~ryR~~gL-~GE--vaiY~~~G~~I~Lk~ 54 (127)
T 3pqh_A 19 SEKVIISNN--------KQTYASFDP-NGN--ISVYNTQGMKIDMTP 54 (127)
T ss_dssp -CCEEEEET--------TTEEEEECT-TSC--EEEEETTSCEEEEET
T ss_pred cccEEEEeC--------CcccccCCC-CCc--EEEEcCCCCEEEEec
Confidence 367888874 667899888 996 666668899999865
No 3
>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2
Probab=7.74 E-value=1.1e+02 Score=33.26 Aligned_cols=40 Identities=18% Similarity=0.199 Sum_probs=31.2
Q ss_pred eEEEEeeccCCCCCCCchhhhhcCCCCCCcceeeeeeCCceEEee
Q 037848 597 HGVAICHIDTSSWSPGHGAFVALGSGPGQIEVCHWIFENDMTWTS 641 (643)
Q Consensus 597 ~AVAVCHlDTS~WnP~H~AF~~LgvKPG~~pVCHfi~~~~ivWvp 641 (643)
+.+.+||++-+ -.+.. +.||+.|-++. ...+.-||+.|..
T Consensus 169 rviG~c~~~~~---~~~~l-~~lgv~~~~v~-~~v~GlNH~~w~~ 208 (480)
T 1obb_A 169 KAVGFCHGHYG---VMEIV-EKLGLEEEKVD-WQVAGVNHGIWLN 208 (480)
T ss_dssp EEEEECSGGGH---HHHHH-HHTTCCGGGEE-EEEEEETTEEEEE
T ss_pred cEEecCCCHHH---HHHHH-HHhCCCHHHce-EEEEeecchhhhh
Confidence 56999999886 35667 99999997653 3568889999983
No 4
>2jy0_A Protease NS2-3; membrane segment, HCV NS2 protein, membrane protein, viral protein; NMR {Synthetic}
Probab=7.71 E-value=2e+02 Score=20.09 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=18.5
Q ss_pred HHHHHhhhhHHHHHHHHHhcCCC
Q 037848 33 QEVTMTMSTIFFFIFLFLSTSPL 55 (643)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~ 55 (643)
+|+....|..++.+.++|.+++.
T Consensus 3 ~e~aas~G~~vlv~lti~TLsP~ 25 (27)
T 2jy0_A 3 REMAASAGGAVFVGLVLLTLSPH 25 (27)
T ss_dssp CHHHHTTSSHHHHHHHHHHHCCC
T ss_pred HHHHhhhhhHHHHHHHHHhcCcc
Confidence 57778889999999999877753
No 5
>2dnf_A Doublecortin domain-containing protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens}
Probab=5.32 E-value=4.6e+02 Score=22.90 Aligned_cols=51 Identities=14% Similarity=0.210 Sum_probs=34.1
Q ss_pred ccCchhHHHHHHHhhcCCc---cEEEEecccCCCcceEEEeeeeeecCCcccceeeeccccC
Q 037848 508 CVGSVEDMIDFATSVLGRN---VVARTTQNANGSKRRVTISSVSGINGGKVTKSVSCHQSLY 566 (643)
Q Consensus 508 CATSLESMvDFa~S~LG~n---v~~~sT~~~~~s~q~~~V~~Vk~I~gg~~~k~V~CH~~~Y 566 (643)
-..|+|.+++-++.+|... |+.+-|.. + +. |..+..+..+ ..-|+|....|
T Consensus 38 ~~~sfe~lL~~lT~~v~l~~GaVr~Lyt~~--G--~~--V~~l~dl~dg--~~YVa~g~E~f 91 (108)
T 2dnf_A 38 TLNQWDHVLQMVTEKITLRSGAVHRLYTLE--G--KL--VESGAELENG--QFYVAVGRDKF 91 (108)
T ss_dssp HHTCHHHHHHHHHHHCCCTTSSCCEEEETT--C--CE--ESSTTSCCSS--CBEEEECSSCC
T ss_pred cccCHHHHHHHHHHhhCCCCCCEEEEEcCC--C--CE--eCCHHHhCCC--CEEEEeCCCcc
Confidence 4679999999999999754 55555532 2 22 4455555433 36788988777
No 6
>1fr3_A MOP, molybdate/tungstate binding protein; molybdate homeostasis, metal binding protein; 1.50A {Sporomusa ovata} SCOP: b.40.6.1
Probab=5.07 E-value=3.8e+02 Score=19.94 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=17.8
Q ss_pred hhhhcCCCCCCcceeeeeeCCceEEe
Q 037848 615 AFVALGSGPGQIEVCHWIFENDMTWT 640 (643)
Q Consensus 615 AF~~LgvKPG~~pVCHfi~~~~ivWv 640 (643)
+...|+++||+ +|+=.+...+++..
T Consensus 42 s~~~l~L~~G~-~V~~~ika~~v~l~ 66 (67)
T 1fr3_A 42 SVADLDLVPGD-KVTALVKATEMEVL 66 (67)
T ss_dssp HHHHHTCCTTC-EEEEEECGGGCEEE
T ss_pred HHHhCCCCCCC-EEEEEEecceEEEe
Confidence 66789999997 67666666565543
No 7
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus}
Probab=4.94 E-value=3.7e+02 Score=25.55 Aligned_cols=25 Identities=32% Similarity=0.413 Sum_probs=19.6
Q ss_pred CCCCCCCcccccCchhHHHHHHHhhc
Q 037848 498 RAPSPGETKRCVGSVEDMIDFATSVL 523 (643)
Q Consensus 498 ~ppi~GEtK~CATSLESMvDFa~S~L 523 (643)
-||..|. ..-..|+|+|++|++.++
T Consensus 149 vpp~~g~-~~~p~si~div~~~v~~~ 173 (189)
T 2ejb_A 149 VPASPAF-YHKPQSIDDMINFVVGKL 173 (189)
T ss_dssp EECCCCS-TTCCCSHHHHHHHHHHHH
T ss_pred eCCChHH-hhCCCCHHHHHHHHHHHH
Confidence 4677887 557899999999987643
No 8
>2liy_A Epidermal patterning factor-like protein 9; plant peptide hormone, EPFL family, stomatal density, positi regulator, hormone; NMR {Arabidopsis thaliana}
Probab=4.68 E-value=6.5e+02 Score=19.31 Aligned_cols=27 Identities=22% Similarity=0.198 Sum_probs=17.9
Q ss_pred ceEEEEEEEeeccCccceeeEEEEeec
Q 037848 578 KVRVYEADVLDVVSNAKINHGVAICHI 604 (643)
Q Consensus 578 ~TrvY~V~L~g~d~~~ki~~AVAVCHl 604 (643)
+-++-+|++.+.|-..-.-+-..|||.
T Consensus 19 ~C~aeqvPvd~~dP~~SAYhY~CvChr 45 (45)
T 2liy_A 19 KCRAEQVPVEGNDPINSAYHYRCVCHR 45 (45)
T ss_dssp EEEEEEEESSCSSSCSCCEEEEEEEEC
T ss_pred ccceeeccccCCCcccchheeEeEecC
Confidence 457778888776643323367899983
No 9
>1kg1_A NIP1, necrosis inducing protein 1; antiparalel beta sheets, toxin; NMR {Rhynchosporium secalis} SCOP: g.70.1.1
Probab=3.82 E-value=2.8e+02 Score=21.93 Aligned_cols=9 Identities=44% Similarity=0.855 Sum_probs=5.7
Q ss_pred cccccccCC
Q 037848 305 TGYAESGNA 313 (643)
Q Consensus 305 ~~Yg~~gN~ 313 (643)
-+||++||+
T Consensus 42 csygeggng 50 (60)
T 1kg1_A 42 CSYGEGGNG 50 (60)
T ss_dssp CCBCTTSSC
T ss_pred EeecCCCCc
Confidence 456677765
No 10
>2efe_A Similarity to vacuolar protein sorting-associated VPS9; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_A 2efc_A* 2efh_A*
Probab=3.76 E-value=1.7e+02 Score=29.09 Aligned_cols=27 Identities=11% Similarity=0.156 Sum_probs=22.3
Q ss_pred ccCCCCCCCcccccCchhHHHHHHHhh
Q 037848 496 CERAPSPGETKRCVGSVEDMIDFATSV 522 (643)
Q Consensus 496 CE~ppi~GEtK~CATSLESMvDFa~S~ 522 (643)
|......||..+|.|++|+-++|....
T Consensus 216 ~~~~~l~gE~gY~lt~l~aA~~fI~~l 242 (267)
T 2efe_A 216 RRESKLVGEAAYFFTNILSAESFISNI 242 (267)
T ss_dssp SCTTTSCHHHHHHHHHHHHHHHHHHTC
T ss_pred cCccccCCHHHHHHHHHHHHHHHHHhC
Confidence 444446799999999999999998864
Done!