BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037851
(1053 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 56.6 bits (135), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 76/298 (25%), Positives = 124/298 (41%), Gaps = 52/298 (17%)
Query: 140 VPEEPWLSSGKGYEAFESRMSTLKSLQNAL--LDPDVTITGVYGMGGLGKTTLVKEVARQ 197
VP+ P + F +R + ++Q L L+ + +YGM G GK+ L E R
Sbjct: 119 VPQRPVI--------FVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVR- 169
Query: 198 VKKDKHFDEVVFAEVSDTPDIKKV--QGELA--DQLGMQFDEESDVPGR---------AR 244
D E F+ I K G L L M+ D+E R R
Sbjct: 170 ---DHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDR 226
Query: 245 KLYARLQKENKILIILDNIWEDLDLEKVGVPSGNDCRGCKVLLTARDRHVLESIGSKTLR 304
L+K + L+ILD++W+ L+ C++LLT RD+ V +S+
Sbjct: 227 LRVLMLRKHPRSLLILDDVWDPWVLKAFD-------NQCQILLTTRDKSVTDSVMGPKHV 279
Query: 305 IDV---LNDE---EAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPIAIVTLAKALRNK 358
+ V L E E +LF M +K +L + A + KEC G P+ + + LR+
Sbjct: 280 VPVESGLGREKGLEILSLFVNM-----KKEDLPAEAHSIIKECKGSPLVVSLIGALLRDF 334
Query: 359 TSVSTWKDALRQLKRPSHRNFEGVLAKTYSAIE----LSYKYLREEELKKLFLQCSLM 412
+ W LRQL+ + + Y A++ +S + LR E++K + S++
Sbjct: 335 P--NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLR-EDIKDYYTDLSIL 389
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 75/298 (25%), Positives = 123/298 (41%), Gaps = 52/298 (17%)
Query: 140 VPEEPWLSSGKGYEAFESRMSTLKSLQNAL--LDPDVTITGVYGMGGLGKTTLVKEVARQ 197
VP+ P + F +R + ++Q L L+ + +YGM G GK+ L E R
Sbjct: 126 VPQRPVI--------FVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVR- 176
Query: 198 VKKDKHFDEVVFAEVSDTPDIKKV--QGELA--DQLGMQFDEESDVPGR---------AR 244
D E F+ I K G L L M+ D+E R R
Sbjct: 177 ---DHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDR 233
Query: 245 KLYARLQKENKILIILDNIWEDLDLEKVGVPSGNDCRGCKVLLTARDRHVLESIGSKTLR 304
L+K + L+ILD++W+ L+ C++LLT D+ V +S+
Sbjct: 234 LRVLMLRKHPRSLLILDDVWDPWVLKAFD-------NQCQILLTTSDKSVTDSVMGPKHV 286
Query: 305 IDV---LNDE---EAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPIAIVTLAKALRNK 358
+ V L E E +LF M +K +L + A + KEC G P+ + + LR+
Sbjct: 287 VPVESGLGREKGLEILSLFVNM-----KKEDLPAEAHSIIKECKGSPLVVSLIGALLRDF 341
Query: 359 TSVSTWKDALRQLKRPSHRNFEGVLAKTYSAIE----LSYKYLREEELKKLFLQCSLM 412
+ W LRQL+ + + Y A++ +S + LR E++K + S++
Sbjct: 342 P--NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLR-EDIKDYYTDLSIL 396
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 70/291 (24%), Positives = 121/291 (41%), Gaps = 61/291 (20%)
Query: 140 VPEEP--WLSSGKGYEAFESRMSTLKSLQNALLDPDVTITGVYGMGGLGKTTLVKEVARQ 197
VP+ P +++ K A + ++S LK + ++GM G GK+ L E R
Sbjct: 119 VPQRPVVFVTRKKLVNAIQQKLSKLKG--------EPGWVTIHGMAGCGKSVLAAEAVR- 169
Query: 198 VKKDKHFDEVVF---------AEVSDTPDIKKVQG---------ELADQLGMQFDEESDV 239
D E F + + + K+Q + +L + +E D
Sbjct: 170 ---DHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKD- 225
Query: 240 PGRARKLYARLQKENKILIILDNIWEDLDLEKVGVPSGNDCRGCKVLLTARDRHVLESIG 299
R R L L+K + L+ILD++W+ L+ C++LLT RD+ V +S+
Sbjct: 226 --RLRILM--LRKHPRSLLILDDVWDSWVLKAFD-------SQCQILLTTRDKSVTDSVM 274
Query: 300 SKTLRIDV---LNDE---EAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPIAIVTLAK 353
+ V L E E +LF M +K +L A + KEC G P+ + +
Sbjct: 275 GPKYVVPVESSLGKEKGLEILSLFVNM-----KKADLPEQAHSIIKECKGSPLVVSLIGA 329
Query: 354 ALRNKTSVSTWKDALRQLKRPSHRNFEGVLAKTYSAIE----LSYKYLREE 400
LR+ + W+ L+QL+ + + Y A++ +S + LRE+
Sbjct: 330 LLRDFP--NRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRED 378
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 75/302 (24%), Positives = 130/302 (43%), Gaps = 60/302 (19%)
Query: 140 VPEEP--WLSSGKGYEAFESRMSTLKSLQNALLDPD-VTITGVYGMGGLGKTTLVKEVAR 196
VP+ P +++ K A + ++S LK +P VTI +GM G GK+ L E R
Sbjct: 125 VPQRPVVFVTRKKLVNAIQQKLSKLKG------EPGWVTI---HGMAGCGKSVLAAEAVR 175
Query: 197 Q-------VKKDKHFDEVVFAEVSDTPDIKKVQG---------ELADQLGMQFDEESDVP 240
H+ V + + + K+Q + +L + +E D
Sbjct: 176 DHSLLEGCFPGGVHW--VSVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKD-- 231
Query: 241 GRARKLYARLQKENKILIILDNIWEDLDLEKVGVPSGNDCRGCKVLLTARDRHVLESIGS 300
R R L L+K + L+ILD++W+ L+ C++LLT RD+ V +S+
Sbjct: 232 -RLRILM--LRKHPRSLLILDDVWDSWVLKAFD-------SQCQILLTTRDKSVTDSVMG 281
Query: 301 KTLRIDV---LNDE---EAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPIAIVTLAKA 354
+ V L E E +LF M +K +L A + KEC G P+ + +
Sbjct: 282 PKYVVPVESSLGKEKGLEILSLFVNM-----KKADLPEQAHSIIKECKGSPLVVSLIGAL 336
Query: 355 LRNKTSVSTWKDALRQLKRPSHRNFEGVLAKTYSAIE----LSYKYLREEELKKLFLQCS 410
LR+ + W+ L+QL+ + + Y A++ +S + LR E++K + S
Sbjct: 337 LRDFP--NRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLR-EDIKDYYTDLS 393
Query: 411 LM 412
++
Sbjct: 394 IL 395
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 71/156 (45%), Gaps = 18/156 (11%)
Query: 551 TDLRTLCLDGCELEDIRVIGELKDLEILSLQGSKIEQLPREIGQLTQLKLLDLSNCSKLK 610
T L L LD CEL ++V G L L L L ++++ LP L L +LD+S ++L
Sbjct: 56 TRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLT 114
Query: 611 VIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDEL----KNLSRLTSLEINIL 666
+ L L +L+ELY+ E + L PG+ L++L NL+ L + +N L
Sbjct: 115 SLPLGALRGLGELQELYLK--GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGL 172
Query: 667 D-----------AGILPSGFFSRKLKRYRIVVGFQW 691
+ +P GFF L + + G W
Sbjct: 173 ENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 208
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 71/156 (45%), Gaps = 18/156 (11%)
Query: 551 TDLRTLCLDGCELEDIRVIGELKDLEILSLQGSKIEQLPREIGQLTQLKLLDLSNCSKLK 610
T L L LD CEL ++V G L L L L ++++ LP L L +LD+S ++L
Sbjct: 55 TRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLT 113
Query: 611 VIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDEL----KNLSRLTSLEINIL 666
+ L L +L+ELY+ E + L PG+ L++L NL+ L + +N L
Sbjct: 114 SLPLGALRGLGELQELYLK--GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGL 171
Query: 667 D-----------AGILPSGFFSRKLKRYRIVVGFQW 691
+ +P GFF L + + G W
Sbjct: 172 ENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 70/156 (44%), Gaps = 18/156 (11%)
Query: 551 TDLRTLCLDGCELEDIRVIGELKDLEILSLQGSKIEQLPREIGQLTQLKLLDLSNCSKLK 610
T L L LD CEL ++V G L L L L ++++ LP L L +LD+S ++L
Sbjct: 55 TRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLT 113
Query: 611 VIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNL-SRLTSLEINILDA- 668
+ L L +L+ELY+ E + L PG+ L++L ++LT L +L+
Sbjct: 114 SLPLGALRGLGELQELYLK--GNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGL 171
Query: 669 -------------GILPSGFFSRKLKRYRIVVGFQW 691
+P GFF L + + G W
Sbjct: 172 ENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 70/156 (44%), Gaps = 18/156 (11%)
Query: 551 TDLRTLCLDGCELEDIRVIGELKDLEILSLQGSKIEQLPREIGQLTQLKLLDLSNCSKLK 610
T L L LD CEL ++V G L L L L ++++ LP L L +LD+S ++L
Sbjct: 55 TRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLT 113
Query: 611 VIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNL-SRLTSLEINILDA- 668
+ L L +L+ELY+ E + L PG+ L++L ++LT L +L+
Sbjct: 114 SLPLGALRGLGELQELYLK--GNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGL 171
Query: 669 -------------GILPSGFFSRKLKRYRIVVGFQW 691
+P GFF L + + G W
Sbjct: 172 ENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 70/156 (44%), Gaps = 18/156 (11%)
Query: 551 TDLRTLCLDGCELEDIRVIGELKDLEILSLQGSKIEQLPREIGQLTQLKLLDLSNCSKLK 610
T L L LD CEL ++V G L L L L ++++ LP L L +LD+S ++L
Sbjct: 55 TRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLT 113
Query: 611 VIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELK-NLSRLTSLEINILDA- 668
+ L L +L+ELY+ E + L PG+ L++L ++LT L +L+
Sbjct: 114 SLPLGALRGLGELQELYLK--GNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGL 171
Query: 669 -------------GILPSGFFSRKLKRYRIVVGFQW 691
+P GFF L + + G W
Sbjct: 172 ENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 70/156 (44%), Gaps = 18/156 (11%)
Query: 551 TDLRTLCLDGCELEDIRVIGELKDLEILSLQGSKIEQLPREIGQLTQLKLLDLSNCSKLK 610
T L L LD CEL ++V G L L L L ++++ LP L L +LD+S ++L
Sbjct: 55 TRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLT 113
Query: 611 VIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELK-NLSRLTSLEINILDA- 668
+ L L +L+ELY+ E + L PG+ L++L ++LT L +L+
Sbjct: 114 SLPLGALRGLGELQELYLK--GNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGL 171
Query: 669 -------------GILPSGFFSRKLKRYRIVVGFQW 691
+P GFF L + + G W
Sbjct: 172 ENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 70/160 (43%), Gaps = 26/160 (16%)
Query: 551 TDLRTLCLDGCELEDIRVIGELKDLEILSLQGSKIEQLPREIGQLTQLKLLDLSNCSKLK 610
T L L LD CEL ++V G L L L L ++++ LP L L +LD+S ++L
Sbjct: 55 TRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLT 113
Query: 611 VIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLEINILDAGI 670
+ L L +L+ELY+ E + L PG+ L++L L + ++ L AG+
Sbjct: 114 SLPLGALRGLGELQELYLK--GNELKTLPPGLLTPTPKLEKLS----LANNDLTELPAGL 167
Query: 671 L-------------------PSGFFSRKLKRYRIVVGFQW 691
L P GFF L + + G W
Sbjct: 168 LNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 70/156 (44%), Gaps = 18/156 (11%)
Query: 551 TDLRTLCLDGCELEDIRVIGELKDLEILSLQGSKIEQLPREIGQLTQLKLLDLSNCSKLK 610
T L L LD EL ++V G L L L L ++++ LP L L +LD+S ++L
Sbjct: 55 TRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLT 113
Query: 611 VIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDEL----KNLSRLTSLEINIL 666
+ L L +L+ELY+ E + L PG+ L++L NL+ L + +N L
Sbjct: 114 SLPLGALRGLGELQELYLK--GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGL 171
Query: 667 DA-----------GILPSGFFSRKLKRYRIVVGFQW 691
+ +P GFF L + + G W
Sbjct: 172 ENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 70/156 (44%), Gaps = 18/156 (11%)
Query: 551 TDLRTLCLDGCELEDIRVIGELKDLEILSLQGSKIEQLPREIGQLTQLKLLDLSNCSKLK 610
T L L LD EL ++V G L L L L ++++ LP L L +LD+S ++L
Sbjct: 55 TRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLT 113
Query: 611 VIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDEL----KNLSRLTSLEINIL 666
+ L L +L+ELY+ E + L PG+ L++L NL+ L + +N L
Sbjct: 114 SLPLGALRGLGELQELYLK--GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGL 171
Query: 667 DA-----------GILPSGFFSRKLKRYRIVVGFQW 691
+ +P GFF L + + G W
Sbjct: 172 ENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 70/156 (44%), Gaps = 18/156 (11%)
Query: 551 TDLRTLCLDGCELEDIRVIGELKDLEILSLQGSKIEQLPREIGQLTQLKLLDLSNCSKLK 610
T L L LD EL ++V G L L L L ++++ LP L L +LD+S ++L
Sbjct: 55 TRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLT 113
Query: 611 VIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDEL----KNLSRLTSLEINIL 666
+ L L +L+ELY+ E + L PG+ L++L NL+ L + +N L
Sbjct: 114 SLPLGALRGLGELQELYLK--GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGL 171
Query: 667 DA-----------GILPSGFFSRKLKRYRIVVGFQW 691
+ +P GFF L + + G W
Sbjct: 172 ENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 63/121 (52%), Gaps = 5/121 (4%)
Query: 514 NSPLK-IPDNIFIGTPKLKVLDFTRMRLLSLPS--SIHLLTDLRTLCLDGCELEDIRVIG 570
N+P++ IP F P L+ LD ++ L S + L +LR L L C L+DI +
Sbjct: 116 NNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLT 175
Query: 571 ELKDLEILSLQGSKIEQL-PREIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMA 629
L LE L L G++++ + P LT L+ L L + +++ I N +L LEEL ++
Sbjct: 176 ALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMH-AQVATIERNAFDDLKSLEELNLS 234
Query: 630 N 630
+
Sbjct: 235 H 235
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 16/107 (14%)
Query: 536 TRMRLLSLPSSIHLLTDLRTLCLDGCELEDIRV--IGELKDLEILSLQGSKIEQLPREIG 593
TR L +P+SI + T R L L ++ IR L+ LEIL L + + ++ E+G
Sbjct: 22 TRRELAEVPASIPVNT--RYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKI--EVG 77
Query: 594 ------QLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIE 634
L L+L D ++L + LS+L EL++ N IE
Sbjct: 78 AFNGLPSLNTLELFD----NRLTTVPTQAFEYLSKLRELWLRNNPIE 120
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 63/121 (52%), Gaps = 5/121 (4%)
Query: 514 NSPLK-IPDNIFIGTPKLKVLDFTRMRLLSLPS--SIHLLTDLRTLCLDGCELEDIRVIG 570
N+P++ IP F P L+ LD ++ L S + L +LR L L C L+DI +
Sbjct: 116 NNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLT 175
Query: 571 ELKDLEILSLQGSKIEQL-PREIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMA 629
L LE L L G++++ + P LT L+ L L + +++ I N +L LEEL ++
Sbjct: 176 ALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMH-AQVATIERNAFDDLKSLEELNLS 234
Query: 630 N 630
+
Sbjct: 235 H 235
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 16/107 (14%)
Query: 536 TRMRLLSLPSSIHLLTDLRTLCLDGCELEDIRV--IGELKDLEILSLQGSKIEQLPREIG 593
TR L +P+SI + T R L L ++ IR L+ LEIL L + + ++ E+G
Sbjct: 22 TRRELAEVPASIPVNT--RYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKI--EVG 77
Query: 594 ------QLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIE 634
L L+L D ++L + LS+L EL++ N IE
Sbjct: 78 AFNGLPSLNTLELFD----NRLTTVPTQAFEYLSKLRELWLRNNPIE 120
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 595 LTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDEL 652
LT L+ LDLS+ ++L+V+ P L L L++ C + + LGPG+ R A+L L
Sbjct: 78 LTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGL--QELGPGLFRGLAALQYL 133
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 8/106 (7%)
Query: 514 NSPLKIPDNIFIGTPKLKVLD--FTRMRLLSLPSSIHLLTDLRTLCLDGCELE--DIRVI 569
N PL + D F P+L++LD FT + + + S L LR L L C L+ + ++
Sbjct: 385 NEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLL 444
Query: 570 GELKDLEILSLQGSKIEQLPREIGQLTQ----LKLLDLSNCSKLKV 611
L+DL L+LQG+ + L Q L++L LS+C+ L +
Sbjct: 445 AGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSI 490
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 65/126 (51%), Gaps = 17/126 (13%)
Query: 557 CLDG---CELEDIRVI--GELKDLEILSLQGSKIEQLPREIGQLTQLKLLDLSNCSKLKV 611
CLD C + ++V+ G +D+ L L G++ +P+E+ L L+DLSN +++
Sbjct: 10 CLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSN-NRIST 68
Query: 612 IAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLEINILDAGIL 671
++ SN++QL L ++ + L R + D LK+L RL SL N D ++
Sbjct: 69 LSNQSFSNMTQLLTLILS-----YNRLRCIPPR---TFDGLKSL-RLLSLHGN--DISVV 117
Query: 672 PSGFFS 677
P G F+
Sbjct: 118 PEGAFN 123
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 37.4 bits (85), Expect = 0.049, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 595 LTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDEL 652
L L+ LDLS+ ++L+ + P L +L L++ C + + LGPG+ R A+L L
Sbjct: 79 LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL--QELGPGLFRGLAALQYL 134
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 37.4 bits (85), Expect = 0.049, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 595 LTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDEL 652
L L+ LDLS+ ++L+ + P L +L L++ C + + LGPG+ R A+L L
Sbjct: 78 LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL--QELGPGLFRGLAALQYL 133
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 37.0 bits (84), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 69/151 (45%), Gaps = 4/151 (2%)
Query: 501 KKCSRISL-YDNNINSPLKIPDNIFIGTPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLD 559
KK S+ S+ D++I + + +P + LD + +++ ++ ++I L L L+
Sbjct: 196 KKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLN 255
Query: 560 GCELEDIRV-IGELKDLEILSLQGSKIEQLPREIGQLTQLKLLDLSNCSKLKVIAPNVLS 618
G L ++ I L +L +L L +++ LP E+G QLK + + P
Sbjct: 256 GNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFD--NMVTTLPWEFG 313
Query: 619 NLSQLEELYMANCSIEWEHLGPGIERSNASL 649
NL L+ L + +E + L E+S L
Sbjct: 314 NLCNLQFLGVEGNPLEKQFLKILTEKSVTGL 344
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 61/123 (49%), Gaps = 18/123 (14%)
Query: 547 IHLLTDLRTLCLDGCELEDIRVIGELKDLEILSLQGSKIEQLPREIG--QLTQLKLLDLS 604
+ +LT+L L L+G +L+DI + L +L L L ++I L G +LT+LKL
Sbjct: 217 LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKL---- 272
Query: 605 NCSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLEIN 664
+++ I+P L+ L+ L L + + E + P + LKNL+ LT N
Sbjct: 273 GANQISNISP--LAGLTALTNLELNEN--QLEDISP--------ISNLKNLTYLTLYFNN 320
Query: 665 ILD 667
I D
Sbjct: 321 ISD 323
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 61/123 (49%), Gaps = 18/123 (14%)
Query: 547 IHLLTDLRTLCLDGCELEDIRVIGELKDLEILSLQGSKIEQLPREIG--QLTQLKLLDLS 604
+ +LT+L L L+G +L+DI + L +L L L ++I L G +LT+LKL
Sbjct: 216 LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKL---- 271
Query: 605 NCSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLEIN 664
+++ I+P L+ L+ L L + + E + P + LKNL+ LT N
Sbjct: 272 GANQISNISP--LAGLTALTNLELNEN--QLEDISP--------ISNLKNLTYLTLYFNN 319
Query: 665 ILD 667
I D
Sbjct: 320 ISD 322
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 61/123 (49%), Gaps = 18/123 (14%)
Query: 547 IHLLTDLRTLCLDGCELEDIRVIGELKDLEILSLQGSKIEQLPREIG--QLTQLKLLDLS 604
+ +LT+L L L+G +L+DI + L +L L L ++I L G +LT+LKL
Sbjct: 212 LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKL---- 267
Query: 605 NCSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLEIN 664
+++ I+P L+ L+ L L + + E + P + LKNL+ LT N
Sbjct: 268 GANQISNISP--LAGLTALTNLELNEN--QLEDISP--------ISNLKNLTYLTLYFNN 315
Query: 665 ILD 667
I D
Sbjct: 316 ISD 318
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 61/123 (49%), Gaps = 18/123 (14%)
Query: 547 IHLLTDLRTLCLDGCELEDIRVIGELKDLEILSLQGSKIEQLPREIG--QLTQLKLLDLS 604
+ +LT+L L L+G +L+DI + L +L L L ++I L G +LT+LKL
Sbjct: 213 LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKL---- 268
Query: 605 NCSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLEIN 664
+++ I+P L+ L+ L L + + E + P + LKNL+ LT N
Sbjct: 269 GANQISNISP--LAGLTALTNLELNEN--QLEDISP--------ISNLKNLTYLTLYFNN 316
Query: 665 ILD 667
I D
Sbjct: 317 ISD 319
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 61/123 (49%), Gaps = 18/123 (14%)
Query: 547 IHLLTDLRTLCLDGCELEDIRVIGELKDLEILSLQGSKIEQLPREIG--QLTQLKLLDLS 604
+ +LT+L L L+G +L+DI + L +L L L ++I L G +LT+LKL
Sbjct: 213 LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKL---- 268
Query: 605 NCSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLEIN 664
+++ I+P L+ L+ L L + + E + P + LKNL+ LT N
Sbjct: 269 GANQISNISP--LAGLTALTNLELNEN--QLEDISP--------ISNLKNLTYLTLYFNN 316
Query: 665 ILD 667
I D
Sbjct: 317 ISD 319
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 61/123 (49%), Gaps = 18/123 (14%)
Query: 547 IHLLTDLRTLCLDGCELEDIRVIGELKDLEILSLQGSKIEQLPREIG--QLTQLKLLDLS 604
+ +LT+L L L+G +L+DI + L +L L L ++I L G +LT+LKL
Sbjct: 212 LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKL---- 267
Query: 605 NCSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLEIN 664
+++ I+P L+ L+ L L + + E + P + LKNL+ LT N
Sbjct: 268 GANQISNISP--LAGLTALTNLELNEN--QLEDISP--------ISNLKNLTYLTLYFNN 315
Query: 665 ILD 667
I D
Sbjct: 316 ISD 318
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 61/123 (49%), Gaps = 18/123 (14%)
Query: 547 IHLLTDLRTLCLDGCELEDIRVIGELKDLEILSLQGSKIEQLPREIG--QLTQLKLLDLS 604
+ +LT+L L L+G +L+DI + L +L L L ++I L G +LT+LKL
Sbjct: 213 LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKL---- 268
Query: 605 NCSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLEIN 664
+++ I+P L+ L+ L L + + E + P + LKNL+ LT N
Sbjct: 269 GANQISNISP--LAGLTALTNLELNEN--QLEDISP--------ISNLKNLTYLTLYFNN 316
Query: 665 ILD 667
I D
Sbjct: 317 ISD 319
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 34.3 bits (77), Expect = 0.33, Method: Composition-based stats.
Identities = 37/109 (33%), Positives = 52/109 (47%), Gaps = 15/109 (13%)
Query: 530 LKVLDFTRMRLLSLPSSIHLLTDLRTLCLDGCELEDIR----VIGELKDLEILSLQG-SK 584
LK L L +L +IH L L L L GC +R + G L+ L L+ S
Sbjct: 208 LKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTA--LRNYPPIFGGRAPLKRLILKDCSN 265
Query: 585 IEQLPREIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSI 633
+ LP +I +LTQL+ LDL C L + P++++ L ANC I
Sbjct: 266 LLTLPLDIHRLTQLEKLDLRGCVNLSRL-PSLIAQLP-------ANCII 306
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 34.3 bits (77), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 569 IGELKDLEILSLQGSKIE-QLPREIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELY 627
IG + L IL+L + I +P E+G L L +LDLS+ +KL P +S L+ L E+
Sbjct: 649 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS-NKLDGRIPQAMSALTMLTEID 707
Query: 628 MAN 630
++N
Sbjct: 708 LSN 710
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 34.3 bits (77), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 569 IGELKDLEILSLQGSKIE-QLPREIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELY 627
IG + L IL+L + I +P E+G L L +LDLS+ +KL P +S L+ L E+
Sbjct: 652 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS-NKLDGRIPQAMSALTMLTEID 710
Query: 628 MAN 630
++N
Sbjct: 711 LSN 713
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 33.1 bits (74), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 568 VIGELKDLEILSLQGSKIEQLPREI-GQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEEL 626
V EL L L L G+K++ LP + +LT L L+LS ++L+ + V L+QL+EL
Sbjct: 47 VFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST-NQLQSLPNGVFDKLTQLKEL 105
Query: 627 YM 628
+
Sbjct: 106 AL 107
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 45/110 (40%), Gaps = 22/110 (20%)
Query: 519 IPDNIFIGTPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDGCELEDIRVIGELKDLEIL 578
+P +F +L VLD +L LPS+ V L L+ L
Sbjct: 79 LPVGVFDSLTQLTVLDLGTNQLTVLPSA---------------------VFDRLVHLKEL 117
Query: 579 SLQGSKIEQLPREIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYM 628
+ +K+ +LPR I +LT L L L ++LK I LS L Y+
Sbjct: 118 FMCCNKLTELPRGIERLTHLTHLALDQ-NQLKSIPHGAFDRLSSLTHAYL 166
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 31.6 bits (70), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 504 SRISLYDNNINSPLKIPDNIFIGTPKLKVLDFTRMRLLSLPSSI-HLLTDLRTLCLDGCE 562
+++SL N I S +PD +F KL +L +L SLP+ + LT L+ L LD +
Sbjct: 55 TKLSLSQNQIQS---LPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQ 111
Query: 563 LEDI 566
L+ +
Sbjct: 112 LKSV 115
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 25/125 (20%)
Query: 519 IPDNIFIGTPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDGCELEDIRVIGELKDLEIL 578
+PD +F L L+ +L SLP V +L +L L
Sbjct: 124 LPDGVFDKLTNLTYLNLAHNQLQSLPKG---------------------VFDKLTNLTEL 162
Query: 579 SLQGSKIEQLPREI-GQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEH 637
L ++++ LP + +LTQLK L L ++LK + V L+ L+ +++ + W+
Sbjct: 163 DLSYNQLQSLPEGVFDKLTQLKDLRLYQ-NQLKSVPDGVFDRLTSLQYIWLHDN--PWDC 219
Query: 638 LGPGI 642
PGI
Sbjct: 220 TCPGI 224
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 61/125 (48%), Gaps = 15/125 (12%)
Query: 550 LTDLRTLCLDGCELEDIRVIGELKDLEILSLQGSKIEQLPREIGQLTQLKLLDLSNCSKL 609
LTDL +L L+ ++EDI + L L + ++I + + T+L L + N +K+
Sbjct: 176 LTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDI-TPVANXTRLNSLKIGN-NKI 233
Query: 610 KVIAPNVLSNLSQLEELYMANCSI----------EWEHLGPGIERSNASLDELKNLSRLT 659
++P L+NLSQL L + I + + L G + + + L NLS+L
Sbjct: 234 TDLSP--LANLSQLTWLEIGTNQISDINAVKDLTKLKXLNVGSNQI-SDISVLNNLSQLN 290
Query: 660 SLEIN 664
SL +N
Sbjct: 291 SLFLN 295
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 72/162 (44%), Gaps = 10/162 (6%)
Query: 496 RQWPDKKCSRISLYDNNINSPLKIPDNIFIGTPKLKVLDFTRMRLLSLP-SSIHLLTDLR 554
R+ PD + L + + N I N F L++L +R + ++ + + L +L
Sbjct: 56 REVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLN 115
Query: 555 TLCLDGCELEDIR--VIGELKDLEILSLQGSKIEQLPR-EIGQLTQLKLLDLSNCSKLKV 611
TL L L I L L+ L L+ + IE +P ++ L+ LDL +L
Sbjct: 116 TLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSY 175
Query: 612 IAPNVLSNLSQLEELYMANCSI-EWEHLGPGIERSNASLDEL 652
I+ LS L L +A C++ E +L P I+ LDEL
Sbjct: 176 ISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIK-----LDEL 212
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 48/92 (52%), Gaps = 6/92 (6%)
Query: 457 LLLDGTNDCFSMHDVVRDVAISIASRDYHVFSMRN---EVDPRQWPDKKCSRISLYDNNI 513
+LLD D ++H + R+ + ++ ++ +N E+ + + ++L DNN
Sbjct: 131 VLLD-IQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNN- 188
Query: 514 NSPLKIPDNIFIGTPKLKVLDFTRMRLLSLPS 545
+ ++P+++F G +LD +R R+ SLPS
Sbjct: 189 -NLEELPNDVFHGASGPVILDISRTRIHSLPS 219
>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
Length = 252
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 48/92 (52%), Gaps = 6/92 (6%)
Query: 457 LLLDGTNDCFSMHDVVRDVAISIASRDYHVFSMRN---EVDPRQWPDKKCSRISLYDNNI 513
+LLD D ++H + R+ + ++ ++ +N E+ + + ++L DNN
Sbjct: 131 VLLD-IQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNN- 188
Query: 514 NSPLKIPDNIFIGTPKLKVLDFTRMRLLSLPS 545
+ ++P+++F G +LD +R R+ SLPS
Sbjct: 189 -NLEELPNDVFHGASGPVILDISRTRIHSLPS 219
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 30.4 bits (67), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Query: 546 SIHLLTDLRTLCLDGCELEDIRVIGELKDLEILSLQGSKIEQLPREIGQLTQLKLLDLSN 605
I L ++ L L+G +L DI+ + LK+L L L +KI+ L L N
Sbjct: 60 GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHN 119
Query: 606 CSKLKVIAPNVLSNLSQLEELYMANCSI 633
+ N L +L QLE LY+ N I
Sbjct: 120 G----ISDINGLVHLPQLESLYLGNNKI 143
>pdb|2EER|A Chain A, Structural Study Of Project Id St2577 From Sulfolobus
Tokodaii Strain7
pdb|2EER|B Chain B, Structural Study Of Project Id St2577 From Sulfolobus
Tokodaii Strain7
Length = 347
Score = 30.4 bits (67), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 52/122 (42%), Gaps = 23/122 (18%)
Query: 131 DFAQISYRTVPEEPWLSSGKGYEAFE------SRMSTLKSLQNALLDPDVTITGVYGMGG 184
D A Y VP +L + A E S ++T ++++ A LDP T+ + GG
Sbjct: 123 DGAYAEYVLVPHYKYLYKLRRLSAVEAAPLTCSGVTTYRAVRKASLDPSKTLVVIGAGGG 182
Query: 185 LGKTTL---------------VKEVARQVKKDKHFDEVVFAEVSD-TPDIKKV-QGELAD 227
LG + V+E A + K D V+ A D +I+++ QG+ AD
Sbjct: 183 LGTMAIQIAKAVSGATIIGVDVREEALEAAKRAGADYVINASSQDPVSEIRRITQGKGAD 242
Query: 228 QL 229
+
Sbjct: 243 AV 244
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 5/106 (4%)
Query: 528 PKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDGCELEDIRVIGELKDLEILSLQGSKIEQ 587
P L L+ + ++ + S I L ++ L L+G +L DI+ + LK+L L L +K++
Sbjct: 66 PNLTSLNLSNNQITDI-SPIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD 124
Query: 588 LPREIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSI 633
L L N + N L +L QLE LY+ N I
Sbjct: 125 LSSLKDLKKLKSLSLEHNG----ISDINGLVHLPQLESLYLGNNKI 166
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 30.4 bits (67), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 82/181 (45%), Gaps = 18/181 (9%)
Query: 501 KKCSRISLYDNNINSPLKIPDNIFIGTPKLKVLD--FTRMRLLSLPSSIHLLTDLRTLCL 558
K S + + + N PL + F P+L++LD FTR+ + + S L L+ L L
Sbjct: 370 KNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNL 429
Query: 559 DGCELE--DIRVIGELKDLEILSLQGSKIEQLPREIGQLTQ----LKLLDLSNCSKLKVI 612
C L+ + ++ L L L+L+G+ + L Q L++L LS+C L I
Sbjct: 430 TYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDGTITKTNLLQTVGSLEVLILSSCGLLS-I 488
Query: 613 APNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLS-RLTSLEINILDAGIL 671
+L ++ + +++ S+ + S SL LK + L + INI+ +L
Sbjct: 489 DQQAFHSLGKMSHVDLSHNSLTCD--------SIDSLSHLKGIYLNLAANSINIISPRLL 540
Query: 672 P 672
P
Sbjct: 541 P 541
>pdb|2NN6|C Chain C, Structure Of The Human Rna Exosome Composed Of Rrp41,
Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40
Length = 278
Score = 30.0 bits (66), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 62/149 (41%), Gaps = 30/149 (20%)
Query: 780 VLQN--LINLERIC--HGQLRAESFCNLKTIKVGSCHKLKNLFSFSIAKFLPQLKTIEVT 835
V++N +I E +C G+L +C+L + N+ L LK +++
Sbjct: 114 VIENSQIIQKEDLCISPGKLVWVLYCDLICLDYDG-----NILDACTFALLAALKNVQLP 168
Query: 836 ECKIVEEIFVSSNEEAIGEIALAQVRSLILRTLPLLASFSAFVKTTSTVEAKHNE----- 890
E I EE A+ E+ L + L +RT P+ SF+ F T V+ E
Sbjct: 169 EVTINEET-------ALAEVNLKKKSYLNIRTHPVATSFAVFDDTLLIVDPTGEEEHLAT 221
Query: 891 ----IILENESQ---LHTP--SSLFNVKL 910
I+++ E + LH P S L KL
Sbjct: 222 GTLTIVMDEEGKLCCLHKPGGSGLTGAKL 250
>pdb|2OGI|A Chain A, Crystal Structure Of A Putative Metal Dependent
Phosphohydrolase (Sag1661) From Streptococcus Agalactiae
Serogroup V At 1.85 A Resolution
pdb|2OGI|B Chain B, Crystal Structure Of A Putative Metal Dependent
Phosphohydrolase (Sag1661) From Streptococcus Agalactiae
Serogroup V At 1.85 A Resolution
Length = 196
Score = 30.0 bits (66), Expect = 7.6, Method: Composition-based stats.
Identities = 31/123 (25%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 184 GLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLGMQFDEESDVPGRA 243
GL +T L+ +V R DK F+ V+ +++ ELA++ G +D+E
Sbjct: 9 GLDRTELLSKV-RHXXSDKRFNHVL--------GVERAAIELAERYG--YDKEKAGLAAL 57
Query: 244 RKLYARLQKENKILIILDNIWEDLDLEKVGVPSGNDCRGCKVL---LTARDRHVLESIGS 300
YA+ +++ L ++D D DL+K G + G + L +D+ +L +I
Sbjct: 58 LHDYAKELSDDEFLRLIDKYQPDPDLKKWGNNIWHGLVGIYKIQEDLAIKDQDILAAIAK 117
Query: 301 KTL 303
T+
Sbjct: 118 HTV 120
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 29.6 bits (65), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 42/98 (42%), Gaps = 7/98 (7%)
Query: 515 SPLKIPDNIFIGTPKLKVLDFTRMRLLSL-PSSIHLLTDLRTLCLDGCELEDIRV----I 569
+PL I F P L++LD ++ L P + L L L L C L D +
Sbjct: 60 TPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYF 119
Query: 570 GELKDLEILSLQGSKIEQLPRE--IGQLTQLKLLDLSN 605
LK L L L ++I L G+L LK +D S+
Sbjct: 120 RNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSS 157
>pdb|1VT4|I Chain I, Structure Of The Drosophila Apoptosome
pdb|1VT4|J Chain J, Structure Of The Drosophila Apoptosome
pdb|1VT4|K Chain K, Structure Of The Drosophila Apoptosome
pdb|1VT4|L Chain L, Structure Of The Drosophila Apoptosome
pdb|1VT4|M Chain M, Structure Of The Drosophila Apoptosome
pdb|1VT4|N Chain N, Structure Of The Drosophila Apoptosome
pdb|1VT4|O Chain O, Structure Of The Drosophila Apoptosome
pdb|1VT4|P Chain P, Structure Of The Drosophila Apoptosome
pdb|3IZ8|A Chain A, Structure Of The Drosophila Apoptosome
pdb|3IZ8|B Chain B, Structure Of The Drosophila Apoptosome
pdb|3IZ8|C Chain C, Structure Of The Drosophila Apoptosome
pdb|3IZ8|D Chain D, Structure Of The Drosophila Apoptosome
pdb|3IZ8|E Chain E, Structure Of The Drosophila Apoptosome
pdb|3IZ8|F Chain F, Structure Of The Drosophila Apoptosome
pdb|3IZ8|G Chain G, Structure Of The Drosophila Apoptosome
pdb|3IZ8|H Chain H, Structure Of The Drosophila Apoptosome
Length = 1221
Score = 29.6 bits (65), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 69/305 (22%), Positives = 125/305 (40%), Gaps = 61/305 (20%)
Query: 157 SRMSTLKSLQNALLD----PDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVF--- 209
SR+ L+ ALL+ +V I GV G G KT + +V K D +F
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVLIDGVLGSG---KTWVALDVCLSYKVQCKMDFKIFWLN 188
Query: 210 AEVSDTPD-----IKKVQGELADQLGMQFDEESDVPGRARKLYARLQK-------ENKIL 257
+ ++P+ ++K+ ++ + D S++ R + A L++ EN +L
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248
Query: 258 IILD----NIWEDLDLEKVGVPSGNDCRGCKVLLTARDRHVLESIGSKTLRIDVLNDEEA 313
++L+ W +L CK+LLT R + V + + + T + D +
Sbjct: 249 VLLNVQNAKAWNAFNL------------SCKILLTTRFKQVTDFLSAAT-TTHISLDHHS 295
Query: 314 WTLFKKMTGDCAEKGELKSI---ATDVAKECGGL-PIAIVTLAKALRNKTSVSTWKDALR 369
TL T D + LK + D+ +E P + +A+++R+ ++TW +
Sbjct: 296 MTL----TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD--GLATWDNW-- 347
Query: 370 QLKRPSHRNFEGVLAKTYSAIELSYKYLREEELKKLFLQCSLMGSPQASTLNLLKYAIGL 429
H N + K + IE S L E +K+F + S+ P A +L I
Sbjct: 348 -----KHVNCD----KLTTIIESSLNVLEPAEYRKMFDRLSVFP-PSAHIPTILLSLIWF 397
Query: 430 GIVKG 434
++K
Sbjct: 398 DVIKS 402
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,283,791
Number of Sequences: 62578
Number of extensions: 1204867
Number of successful extensions: 3567
Number of sequences better than 100.0: 78
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 69
Number of HSP's that attempted gapping in prelim test: 3436
Number of HSP's gapped (non-prelim): 157
length of query: 1053
length of database: 14,973,337
effective HSP length: 109
effective length of query: 944
effective length of database: 8,152,335
effective search space: 7695804240
effective search space used: 7695804240
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)