Query 037851
Match_columns 1053
No_of_seqs 556 out of 4668
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 05:01:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037851.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037851hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.2E-80 2.6E-85 741.3 50.1 621 16-666 12-678 (889)
2 PLN03210 Resistant to P. syrin 100.0 6E-64 1.3E-68 635.4 59.0 717 151-1014 182-944 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 1.4E-41 2.9E-46 370.8 16.2 274 158-434 1-284 (287)
4 PLN00113 leucine-rich repeat r 100.0 8.1E-28 1.8E-32 307.5 25.0 487 503-1048 95-593 (968)
5 PLN00113 leucine-rich repeat r 99.9 8E-27 1.7E-31 298.3 25.7 485 503-1045 71-566 (968)
6 KOG4194 Membrane glycoprotein 99.8 1.3E-21 2.8E-26 209.3 5.7 112 912-1037 316-427 (873)
7 PLN03210 Resistant to P. syrin 99.8 9.7E-19 2.1E-23 223.3 30.1 300 519-876 580-887 (1153)
8 KOG0444 Cytoskeletal regulator 99.8 1.4E-22 3.1E-27 217.4 -5.3 113 912-1043 267-379 (1255)
9 KOG4194 Membrane glycoprotein 99.8 9.4E-21 2E-25 202.7 3.5 358 530-951 80-448 (873)
10 KOG0472 Leucine-rich repeat pr 99.7 3.8E-21 8.3E-26 197.0 -10.8 456 525-1038 65-540 (565)
11 KOG0444 Cytoskeletal regulator 99.7 8.3E-20 1.8E-24 196.4 -4.1 286 503-837 9-301 (1255)
12 KOG0618 Serine/threonine phosp 99.7 3.6E-19 7.9E-24 201.4 -1.9 111 519-631 36-147 (1081)
13 KOG0472 Leucine-rich repeat pr 99.7 1.2E-20 2.7E-25 193.3 -14.1 220 519-757 83-308 (565)
14 KOG0618 Serine/threonine phosp 99.6 4E-18 8.7E-23 193.1 -5.1 419 504-1014 48-490 (1081)
15 KOG0617 Ras suppressor protein 99.4 7.3E-15 1.6E-19 133.5 -4.4 155 503-675 35-192 (264)
16 PRK04841 transcriptional regul 99.4 4E-11 8.6E-16 153.3 24.8 290 152-480 13-332 (903)
17 PRK15387 E3 ubiquitin-protein 99.3 3.3E-11 7.2E-16 142.7 15.2 254 505-840 205-458 (788)
18 KOG4658 Apoptotic ATPase [Sign 99.2 4.5E-12 9.8E-17 153.5 5.7 102 503-605 547-651 (889)
19 KOG0617 Ras suppressor protein 99.2 2.1E-13 4.5E-18 124.2 -4.5 148 526-685 31-180 (264)
20 COG2909 MalT ATP-dependent tra 99.2 2.9E-10 6.4E-15 130.0 17.6 289 152-482 18-340 (894)
21 PRK00411 cdc6 cell division co 99.2 4.6E-09 9.9E-14 120.0 25.4 289 151-460 28-357 (394)
22 PRK15370 E3 ubiquitin-protein 99.1 1.7E-10 3.6E-15 137.9 12.4 244 504-839 181-427 (754)
23 PRK15387 E3 ubiquitin-protein 99.1 4.7E-10 1E-14 133.1 15.1 234 502-812 223-456 (788)
24 TIGR03015 pepcterm_ATPase puta 99.1 6.5E-09 1.4E-13 112.1 22.7 180 171-355 40-242 (269)
25 PF01637 Arch_ATPase: Archaeal 99.1 1.5E-10 3.2E-15 122.3 9.7 192 155-350 1-233 (234)
26 TIGR02928 orc1/cdc6 family rep 99.1 5E-08 1.1E-12 110.3 28.4 290 152-460 14-349 (365)
27 PRK15370 E3 ubiquitin-protein 99.1 4.4E-10 9.5E-15 134.3 11.0 142 502-673 200-342 (754)
28 TIGR00635 ruvB Holliday juncti 99.1 3.9E-09 8.4E-14 115.9 17.0 274 153-464 4-292 (305)
29 PF05729 NACHT: NACHT domain 99.0 1.9E-09 4.1E-14 106.9 12.0 141 175-321 1-163 (166)
30 PRK00080 ruvB Holliday junctio 99.0 5.5E-09 1.2E-13 115.2 16.7 276 151-464 23-313 (328)
31 KOG4237 Extracellular matrix p 99.0 7.6E-11 1.7E-15 122.2 1.1 100 531-631 70-174 (498)
32 PF14580 LRR_9: Leucine-rich r 98.9 2E-09 4.3E-14 104.3 5.0 129 526-664 17-148 (175)
33 COG3899 Predicted ATPase [Gene 98.8 1.2E-07 2.7E-12 115.9 20.1 304 155-479 2-385 (849)
34 KOG4237 Extracellular matrix p 98.8 1.2E-10 2.6E-15 120.7 -5.2 127 503-633 69-200 (498)
35 PF14580 LRR_9: Leucine-rich r 98.8 3.8E-09 8.2E-14 102.4 3.8 121 537-670 6-127 (175)
36 KOG4341 F-box protein containi 98.7 5E-10 1.1E-14 117.3 -4.1 149 800-984 293-442 (483)
37 KOG4341 F-box protein containi 98.7 3.9E-10 8.5E-15 118.1 -6.3 121 910-1040 317-440 (483)
38 KOG1259 Nischarin, modulator o 98.7 2.1E-09 4.4E-14 107.3 -1.2 135 526-673 282-416 (490)
39 cd00116 LRR_RI Leucine-rich re 98.7 3.8E-09 8.3E-14 117.4 0.6 110 523-633 18-149 (319)
40 PTZ00112 origin recognition co 98.7 6.5E-07 1.4E-11 103.9 18.3 202 153-356 755-987 (1164)
41 PRK13342 recombination factor 98.7 8.1E-07 1.8E-11 101.1 18.3 176 152-354 11-199 (413)
42 COG2256 MGS1 ATPase related to 98.6 2.2E-07 4.7E-12 98.1 12.2 219 152-399 23-265 (436)
43 PRK06893 DNA replication initi 98.6 4E-07 8.7E-12 94.5 12.5 151 173-352 38-204 (229)
44 KOG0532 Leucine-rich repeat (L 98.6 2.7E-09 5.9E-14 116.0 -4.7 140 519-675 90-230 (722)
45 PTZ00202 tuzin; Provisional 98.6 2.6E-05 5.6E-10 84.3 24.7 163 148-321 257-434 (550)
46 COG1474 CDC6 Cdc6-related prot 98.6 6.7E-06 1.4E-10 90.5 21.2 199 154-354 18-241 (366)
47 cd00116 LRR_RI Leucine-rich re 98.5 1.1E-08 2.5E-13 113.6 -1.2 81 526-606 49-147 (319)
48 TIGR03420 DnaA_homol_Hda DnaA 98.5 1.1E-06 2.4E-11 91.9 12.7 169 157-354 21-204 (226)
49 KOG0532 Leucine-rich repeat (L 98.5 6.8E-09 1.5E-13 112.9 -4.3 141 519-676 113-254 (722)
50 PRK12402 replication factor C 98.5 2.3E-06 5E-11 95.7 15.3 197 152-350 14-225 (337)
51 PF13401 AAA_22: AAA domain; P 98.5 5.6E-07 1.2E-11 85.0 8.7 116 174-291 4-125 (131)
52 COG3903 Predicted ATPase [Gene 98.5 3.1E-07 6.8E-12 97.8 7.5 289 174-482 14-316 (414)
53 PRK07003 DNA polymerase III su 98.4 8.2E-06 1.8E-10 94.8 19.1 180 151-353 14-223 (830)
54 PRK04195 replication factor C 98.4 1.9E-05 4.2E-10 91.8 21.8 183 150-356 11-207 (482)
55 cd00009 AAA The AAA+ (ATPases 98.4 2.1E-06 4.6E-11 83.0 11.8 123 156-293 1-131 (151)
56 PF13173 AAA_14: AAA domain 98.4 6.1E-07 1.3E-11 83.9 7.5 118 175-313 3-127 (128)
57 PRK14961 DNA polymerase III su 98.4 8.9E-06 1.9E-10 90.8 17.8 175 152-349 15-218 (363)
58 PRK05564 DNA polymerase III su 98.4 6.7E-06 1.5E-10 90.1 16.3 174 153-349 4-188 (313)
59 PLN03025 replication factor C 98.4 5.9E-06 1.3E-10 90.8 15.8 181 151-348 11-197 (319)
60 PRK14960 DNA polymerase III su 98.4 8E-06 1.7E-10 93.9 16.1 177 151-350 13-218 (702)
61 PRK14949 DNA polymerase III su 98.4 6.8E-06 1.5E-10 97.4 15.9 181 152-351 15-220 (944)
62 PRK00440 rfc replication facto 98.3 1.2E-05 2.6E-10 89.2 17.2 182 151-350 15-202 (319)
63 PRK12323 DNA polymerase III su 98.3 9.2E-06 2E-10 93.1 16.1 178 151-351 14-225 (700)
64 cd01128 rho_factor Transcripti 98.3 9.5E-07 2.1E-11 91.6 7.2 93 173-266 15-115 (249)
65 KOG3207 Beta-tubulin folding c 98.3 1.6E-07 3.4E-12 99.6 1.4 86 549-635 119-211 (505)
66 PRK09112 DNA polymerase III su 98.3 1.8E-05 3.8E-10 87.0 17.0 198 148-351 18-240 (351)
67 TIGR02903 spore_lon_C ATP-depe 98.3 9.4E-05 2E-09 87.9 24.2 201 152-354 153-398 (615)
68 PF13191 AAA_16: AAA ATPase do 98.3 3E-06 6.4E-11 85.6 10.1 74 154-229 1-82 (185)
69 PRK14956 DNA polymerase III su 98.3 1.3E-05 2.7E-10 89.8 15.1 190 151-348 16-219 (484)
70 PRK14963 DNA polymerase III su 98.3 2.2E-05 4.9E-10 90.4 17.6 194 152-355 13-222 (504)
71 PRK06645 DNA polymerase III su 98.3 2.3E-05 4.9E-10 89.8 17.3 175 151-348 19-226 (507)
72 PRK14957 DNA polymerase III su 98.3 2.4E-05 5.3E-10 90.1 17.2 184 152-354 15-224 (546)
73 PRK08727 hypothetical protein; 98.2 1.6E-05 3.6E-10 82.7 13.9 167 153-348 19-201 (233)
74 PRK08084 DNA replication initi 98.2 2E-05 4.4E-10 82.1 14.4 162 160-351 31-209 (235)
75 PF05621 TniB: Bacterial TniB 98.2 4.7E-05 1E-09 79.4 16.7 191 160-350 44-260 (302)
76 TIGR01242 26Sp45 26S proteasom 98.2 1.3E-05 2.7E-10 90.0 13.5 175 148-345 117-328 (364)
77 PRK09376 rho transcription ter 98.2 4E-06 8.6E-11 90.3 8.9 101 165-266 159-268 (416)
78 PRK14962 DNA polymerase III su 98.2 3.9E-05 8.4E-10 87.7 17.5 186 151-355 12-223 (472)
79 PRK13341 recombination factor 98.2 1.6E-05 3.5E-10 95.1 15.1 170 150-346 25-212 (725)
80 PF05496 RuvB_N: Holliday junc 98.2 8.1E-06 1.7E-10 80.9 10.3 176 150-355 21-225 (233)
81 KOG3207 Beta-tubulin folding c 98.2 3.9E-07 8.5E-12 96.6 0.9 134 524-668 142-283 (505)
82 PRK09087 hypothetical protein; 98.2 4.4E-05 9.4E-10 78.7 15.7 139 174-352 44-196 (226)
83 PF13855 LRR_8: Leucine rich r 98.2 1.5E-06 3.3E-11 68.9 3.8 59 573-632 1-60 (61)
84 COG4886 Leucine-rich repeat (L 98.2 1.5E-06 3.3E-11 99.4 5.2 127 526-666 114-242 (394)
85 TIGR00678 holB DNA polymerase 98.2 2.8E-05 6.1E-10 78.4 13.7 158 164-347 3-187 (188)
86 PRK14964 DNA polymerase III su 98.2 4.1E-05 8.9E-10 86.9 16.2 179 151-348 11-214 (491)
87 PRK07471 DNA polymerase III su 98.2 4.8E-05 1E-09 84.0 16.5 198 149-351 15-238 (365)
88 PF13855 LRR_8: Leucine rich r 98.2 2.3E-06 4.9E-11 67.9 4.4 56 529-584 2-60 (61)
89 PRK08691 DNA polymerase III su 98.2 3.2E-05 6.9E-10 90.0 15.5 177 151-350 14-219 (709)
90 PLN03150 hypothetical protein; 98.2 3.7E-06 8E-11 100.8 8.3 103 529-632 419-526 (623)
91 KOG2028 ATPase related to the 98.2 1.4E-05 3E-10 82.8 11.0 158 166-345 154-330 (554)
92 KOG1259 Nischarin, modulator o 98.1 4E-07 8.7E-12 91.3 -0.2 124 504-634 287-412 (490)
93 TIGR02397 dnaX_nterm DNA polym 98.1 8.1E-05 1.8E-09 83.9 18.3 182 151-352 12-219 (355)
94 PRK07994 DNA polymerase III su 98.1 3.3E-05 7.1E-10 90.4 15.1 192 151-351 14-220 (647)
95 PRK07940 DNA polymerase III su 98.1 6.4E-05 1.4E-09 83.7 16.7 170 153-351 5-213 (394)
96 PRK05896 DNA polymerase III su 98.1 5.2E-05 1.1E-09 87.4 16.0 194 151-353 14-223 (605)
97 PRK14958 DNA polymerase III su 98.1 4.7E-05 1E-09 88.0 15.8 180 151-349 14-218 (509)
98 PRK14955 DNA polymerase III su 98.1 5.6E-05 1.2E-09 85.5 16.1 197 152-349 15-226 (397)
99 KOG2120 SCF ubiquitin ligase, 98.1 6E-08 1.3E-12 97.2 -7.1 64 570-633 207-272 (419)
100 PRK15386 type III secretion pr 98.1 8.7E-06 1.9E-10 88.8 8.5 35 802-840 73-107 (426)
101 PRK14087 dnaA chromosomal repl 98.1 0.00014 3E-09 83.1 18.1 182 175-371 142-348 (450)
102 KOG2227 Pre-initiation complex 98.1 0.00023 5E-09 77.0 18.2 205 150-354 147-371 (529)
103 PRK14951 DNA polymerase III su 98.1 7.9E-05 1.7E-09 87.2 16.2 194 151-350 14-224 (618)
104 KOG0989 Replication factor C, 98.0 0.00014 3.1E-09 74.4 15.3 184 149-346 32-225 (346)
105 TIGR00767 rho transcription te 98.0 1.3E-05 2.8E-10 87.0 8.2 93 173-266 167-267 (415)
106 KOG1859 Leucine-rich repeat pr 98.0 9.6E-08 2.1E-12 106.8 -8.1 126 529-668 165-291 (1096)
107 TIGR02639 ClpA ATP-dependent C 98.0 4.4E-05 9.5E-10 93.4 13.8 157 151-321 180-358 (731)
108 PRK14959 DNA polymerase III su 98.0 0.00022 4.7E-09 82.9 18.5 195 152-355 15-225 (624)
109 PF14516 AAA_35: AAA-like doma 98.0 0.00034 7.4E-09 76.9 19.3 201 150-358 8-246 (331)
110 PRK14969 DNA polymerase III su 98.0 0.00011 2.4E-09 85.6 16.0 177 152-351 15-221 (527)
111 PRK15386 type III secretion pr 98.0 9.3E-06 2E-10 88.6 6.5 61 912-985 51-111 (426)
112 TIGR03345 VI_ClpV1 type VI sec 98.0 6.1E-05 1.3E-09 92.7 14.2 180 150-344 184-389 (852)
113 PRK03992 proteasome-activating 98.0 6.9E-05 1.5E-09 84.3 13.3 174 149-345 127-337 (389)
114 PRK09111 DNA polymerase III su 97.9 0.00018 3.9E-09 84.4 16.6 196 150-351 21-233 (598)
115 PF00308 Bac_DnaA: Bacterial d 97.9 5.1E-05 1.1E-09 77.9 10.6 155 174-348 34-205 (219)
116 PRK05642 DNA replication initi 97.9 0.00016 3.4E-09 75.4 14.1 150 175-353 46-210 (234)
117 COG4886 Leucine-rich repeat (L 97.9 7.5E-06 1.6E-10 93.7 4.7 165 503-685 118-284 (394)
118 PRK08903 DnaA regulatory inact 97.9 0.0001 2.2E-09 77.0 12.6 166 157-355 23-203 (227)
119 PRK14970 DNA polymerase III su 97.9 0.00026 5.6E-09 79.8 16.8 183 151-352 15-211 (367)
120 PRK14971 DNA polymerase III su 97.9 0.00029 6.3E-09 83.4 17.6 178 152-349 16-220 (614)
121 PLN03150 hypothetical protein; 97.9 2.1E-05 4.6E-10 94.3 8.2 103 552-666 419-525 (623)
122 PRK07764 DNA polymerase III su 97.9 0.00023 5.1E-09 86.5 16.7 173 152-348 14-218 (824)
123 TIGR02881 spore_V_K stage V sp 97.9 9.7E-05 2.1E-09 78.7 11.9 133 173-322 41-192 (261)
124 PRK14954 DNA polymerase III su 97.9 0.00038 8.2E-09 81.9 17.6 200 152-352 15-230 (620)
125 PRK06305 DNA polymerase III su 97.9 0.0004 8.6E-09 79.5 17.3 181 152-352 16-224 (451)
126 PRK14952 DNA polymerase III su 97.9 0.00035 7.6E-09 81.5 16.9 181 152-355 12-224 (584)
127 COG2255 RuvB Holliday junction 97.9 0.004 8.7E-08 63.4 21.8 176 150-355 23-227 (332)
128 CHL00095 clpC Clp protease ATP 97.9 0.00013 2.9E-09 90.4 14.3 156 152-321 178-354 (821)
129 TIGR03689 pup_AAA proteasome A 97.9 0.00016 3.4E-09 82.6 13.6 161 149-323 178-380 (512)
130 PRK11331 5-methylcytosine-spec 97.8 8.2E-05 1.8E-09 82.3 10.5 108 153-266 175-284 (459)
131 PRK08451 DNA polymerase III su 97.8 0.00041 9E-09 79.7 16.4 181 152-351 13-218 (535)
132 KOG2120 SCF ubiquitin ligase, 97.8 8.5E-07 1.8E-11 89.2 -5.0 86 942-1036 286-373 (419)
133 PRK14950 DNA polymerase III su 97.8 0.00054 1.2E-08 81.4 17.6 194 152-353 15-223 (585)
134 PRK07133 DNA polymerase III su 97.8 0.00044 9.6E-09 81.7 16.4 179 151-352 16-221 (725)
135 PRK14953 DNA polymerase III su 97.8 0.00077 1.7E-08 77.6 17.5 178 152-352 15-221 (486)
136 KOG0531 Protein phosphatase 1, 97.7 6.1E-06 1.3E-10 94.5 -0.0 106 525-633 92-198 (414)
137 PHA02544 44 clamp loader, smal 97.7 0.00024 5.2E-09 78.5 12.5 146 150-319 18-171 (316)
138 PRK00149 dnaA chromosomal repl 97.7 0.00048 1E-08 79.6 15.4 179 175-371 149-349 (450)
139 KOG2543 Origin recognition com 97.7 0.00041 9E-09 73.2 13.0 162 153-320 6-192 (438)
140 PF12799 LRR_4: Leucine Rich r 97.7 3.3E-05 7.1E-10 55.9 3.4 36 529-564 2-37 (44)
141 CHL00181 cbbX CbbX; Provisiona 97.7 0.00076 1.6E-08 72.3 15.4 131 175-322 60-210 (287)
142 KOG2004 Mitochondrial ATP-depe 97.7 0.00088 1.9E-08 76.2 16.1 100 152-266 410-517 (906)
143 PRK14088 dnaA chromosomal repl 97.7 0.0013 2.8E-08 75.2 18.2 180 175-371 131-332 (440)
144 TIGR00362 DnaA chromosomal rep 97.7 0.00066 1.4E-08 77.5 15.3 179 175-371 137-337 (405)
145 PRK12422 chromosomal replicati 97.7 0.0014 3.1E-08 74.6 17.4 151 175-345 142-307 (445)
146 TIGR02880 cbbX_cfxQ probable R 97.7 0.00053 1.2E-08 73.5 13.2 130 176-322 60-209 (284)
147 TIGR03346 chaperone_ClpB ATP-d 97.7 0.0006 1.3E-08 84.9 15.5 156 151-321 171-349 (852)
148 PRK06647 DNA polymerase III su 97.7 0.0012 2.6E-08 77.3 17.0 192 151-351 14-220 (563)
149 KOG0531 Protein phosphatase 1, 97.7 7.6E-06 1.7E-10 93.7 -1.1 129 526-671 70-201 (414)
150 PTZ00454 26S protease regulato 97.7 0.00055 1.2E-08 76.6 13.6 175 148-345 140-351 (398)
151 PF12799 LRR_4: Leucine Rich r 97.6 6.1E-05 1.3E-09 54.4 3.7 38 574-612 2-39 (44)
152 PRK14948 DNA polymerase III su 97.6 0.0014 3E-08 77.8 17.1 196 151-352 14-223 (620)
153 KOG1909 Ran GTPase-activating 97.6 7.9E-06 1.7E-10 84.7 -1.5 241 525-812 27-309 (382)
154 PRK14965 DNA polymerase III su 97.6 0.00092 2E-08 79.1 15.4 195 151-353 14-223 (576)
155 PRK11034 clpA ATP-dependent Cl 97.6 7.9E-05 1.7E-09 89.8 6.6 156 152-321 185-362 (758)
156 PRK07399 DNA polymerase III su 97.6 0.0014 3.1E-08 71.0 15.7 193 153-351 4-221 (314)
157 PRK10865 protein disaggregatio 97.6 0.00056 1.2E-08 84.7 13.3 157 150-321 175-354 (857)
158 TIGR00602 rad24 checkpoint pro 97.6 0.00026 5.7E-09 83.1 9.9 51 149-199 80-135 (637)
159 KOG0731 AAA+-type ATPase conta 97.6 0.0016 3.4E-08 76.4 15.9 173 154-348 312-521 (774)
160 PRK05563 DNA polymerase III su 97.6 0.0016 3.4E-08 76.7 16.3 191 151-349 14-218 (559)
161 KOG2982 Uncharacterized conser 97.5 4.3E-05 9.4E-10 77.2 2.5 62 772-835 222-287 (418)
162 PRK06620 hypothetical protein; 97.5 0.00047 1E-08 70.4 10.0 132 175-348 45-186 (214)
163 COG1373 Predicted ATPase (AAA+ 97.5 0.00083 1.8E-08 75.6 12.9 135 158-317 22-163 (398)
164 KOG1947 Leucine rich repeat pr 97.5 6.5E-06 1.4E-10 97.5 -4.2 121 718-841 186-309 (482)
165 PTZ00361 26 proteosome regulat 97.5 0.00054 1.2E-08 77.1 11.3 173 150-345 180-389 (438)
166 KOG3665 ZYG-1-like serine/thre 97.5 3.2E-05 7E-10 92.2 1.6 130 503-633 124-262 (699)
167 PRK14086 dnaA chromosomal repl 97.5 0.003 6.5E-08 73.3 17.3 179 175-371 315-515 (617)
168 PF00004 AAA: ATPase family as 97.5 0.00035 7.6E-09 65.8 8.4 69 177-266 1-70 (132)
169 smart00382 AAA ATPases associa 97.4 0.00048 1E-08 65.8 8.5 90 175-268 3-92 (148)
170 COG1222 RPT1 ATP-dependent 26S 97.4 0.0037 8.1E-08 65.8 14.8 183 147-355 145-371 (406)
171 CHL00176 ftsH cell division pr 97.4 0.0019 4.1E-08 76.6 14.2 169 153-344 183-387 (638)
172 PRK05707 DNA polymerase III su 97.4 0.0026 5.6E-08 69.5 13.7 166 174-351 22-203 (328)
173 COG0466 Lon ATP-dependent Lon 97.3 0.0082 1.8E-07 69.1 17.1 154 153-321 323-508 (782)
174 COG0542 clpA ATP-binding subun 97.3 0.0088 1.9E-07 70.9 17.9 114 154-276 492-617 (786)
175 COG3267 ExeA Type II secretory 97.3 0.017 3.8E-07 58.3 17.2 180 171-354 48-248 (269)
176 PRK10865 protein disaggregatio 97.3 0.041 8.9E-07 68.5 24.6 105 154-266 569-682 (857)
177 PRK10536 hypothetical protein; 97.3 0.0025 5.5E-08 65.3 11.6 56 151-208 53-108 (262)
178 COG0593 DnaA ATPase involved i 97.3 0.0038 8.3E-08 68.7 13.7 129 174-322 113-258 (408)
179 PF05673 DUF815: Protein of un 97.2 0.031 6.6E-07 56.8 18.4 54 149-202 23-80 (249)
180 PRK12608 transcription termina 97.2 0.0027 5.9E-08 68.9 11.7 103 163-266 121-232 (380)
181 PHA00729 NTP-binding motif con 97.2 0.0028 6E-08 64.0 11.0 36 164-199 7-42 (226)
182 CHL00195 ycf46 Ycf46; Provisio 97.2 0.0041 8.8E-08 71.4 13.7 173 152-345 227-429 (489)
183 TIGR01241 FtsH_fam ATP-depende 97.2 0.0072 1.6E-07 70.8 16.3 200 149-371 51-295 (495)
184 KOG0741 AAA+-type ATPase [Post 97.2 0.0055 1.2E-07 67.4 13.7 147 173-341 537-704 (744)
185 TIGR00763 lon ATP-dependent pr 97.2 0.018 3.9E-07 71.2 19.7 46 154-199 321-372 (775)
186 PRK08116 hypothetical protein; 97.1 0.0015 3.3E-08 69.3 8.9 102 175-292 115-221 (268)
187 PRK08769 DNA polymerase III su 97.1 0.0089 1.9E-07 64.6 14.7 171 161-351 12-208 (319)
188 KOG3665 ZYG-1-like serine/thre 97.1 0.00023 5E-09 85.0 2.8 81 549-631 146-230 (699)
189 PF10443 RNA12: RNA12 protein; 97.1 0.031 6.7E-07 61.4 18.5 194 158-361 1-288 (431)
190 KOG1859 Leucine-rich repeat pr 97.1 2.8E-05 6.1E-10 87.7 -4.7 105 524-633 183-291 (1096)
191 PRK08058 DNA polymerase III su 97.1 0.008 1.7E-07 66.1 14.4 143 155-320 7-181 (329)
192 PRK08118 topology modulation p 97.1 0.00028 6.1E-09 69.0 2.6 35 175-209 2-37 (167)
193 PRK12377 putative replication 97.1 0.0017 3.8E-08 67.4 8.4 75 173-265 100-174 (248)
194 PRK10787 DNA-binding ATP-depen 97.1 0.0067 1.4E-07 74.2 14.4 156 153-321 322-506 (784)
195 KOG1909 Ran GTPase-activating 97.1 9.7E-05 2.1E-09 76.8 -1.1 39 526-564 90-133 (382)
196 COG1223 Predicted ATPase (AAA+ 97.0 0.008 1.7E-07 60.1 11.9 170 152-344 120-318 (368)
197 KOG0991 Replication factor C, 97.0 0.0015 3.2E-08 64.0 6.6 101 151-266 25-125 (333)
198 KOG1947 Leucine rich repeat pr 97.0 5.8E-05 1.3E-09 89.4 -3.8 248 744-1041 186-442 (482)
199 KOG0739 AAA+-type ATPase [Post 97.0 0.015 3.2E-07 59.4 13.6 170 153-345 133-335 (439)
200 TIGR03345 VI_ClpV1 type VI sec 97.0 0.0058 1.3E-07 75.6 13.2 106 153-266 566-680 (852)
201 KOG1514 Origin recognition com 96.9 0.026 5.5E-07 64.9 16.4 197 153-355 396-625 (767)
202 TIGR02639 ClpA ATP-dependent C 96.9 0.0047 1E-07 75.9 11.6 103 153-266 454-565 (731)
203 KOG0733 Nuclear AAA ATPase (VC 96.9 0.011 2.4E-07 66.3 13.1 182 151-355 188-410 (802)
204 PRK06090 DNA polymerase III su 96.9 0.072 1.6E-06 57.6 19.1 174 161-351 11-201 (319)
205 COG0542 clpA ATP-binding subun 96.9 0.002 4.3E-08 76.2 7.8 158 150-321 167-346 (786)
206 TIGR02640 gas_vesic_GvpN gas v 96.9 0.019 4.2E-07 61.0 14.7 56 160-222 9-64 (262)
207 TIGR03346 chaperone_ClpB ATP-d 96.9 0.012 2.6E-07 73.5 15.1 131 153-291 565-717 (852)
208 PRK06871 DNA polymerase III su 96.8 0.035 7.7E-07 60.1 16.0 174 162-348 11-200 (325)
209 PRK12727 flagellar biosynthesi 96.8 0.042 9.1E-07 62.5 16.6 88 174-264 350-438 (559)
210 PF00448 SRP54: SRP54-type pro 96.8 0.0083 1.8E-07 60.3 10.1 89 174-264 1-93 (196)
211 PRK08939 primosomal protein Dn 96.8 0.0089 1.9E-07 64.6 11.0 116 157-291 135-260 (306)
212 PF04665 Pox_A32: Poxvirus A32 96.8 0.0033 7.2E-08 64.2 7.3 36 175-212 14-49 (241)
213 KOG0734 AAA+-type ATPase conta 96.8 0.0037 8E-08 68.8 7.8 88 158-266 312-408 (752)
214 PRK08181 transposase; Validate 96.8 0.002 4.3E-08 67.9 5.6 79 167-266 101-179 (269)
215 COG2884 FtsE Predicted ATPase 96.7 0.01 2.3E-07 56.8 9.6 127 173-303 27-208 (223)
216 TIGR01243 CDC48 AAA family ATP 96.7 0.015 3.3E-07 71.8 14.1 171 152-345 452-657 (733)
217 KOG1644 U2-associated snRNP A' 96.7 0.0026 5.7E-08 61.3 5.5 80 553-633 44-125 (233)
218 KOG4579 Leucine-rich repeat (L 96.7 0.00015 3.2E-09 64.9 -2.7 79 549-629 51-131 (177)
219 KOG4579 Leucine-rich repeat (L 96.7 0.00032 6.8E-09 62.9 -0.7 87 526-613 51-139 (177)
220 KOG1644 U2-associated snRNP A' 96.7 0.0043 9.4E-08 59.8 6.8 106 553-670 21-127 (233)
221 COG1484 DnaC DNA replication p 96.7 0.0052 1.1E-07 64.5 8.0 75 173-265 104-178 (254)
222 PRK07261 topology modulation p 96.7 0.0059 1.3E-07 60.1 7.9 34 176-209 2-36 (171)
223 PRK06526 transposase; Provisio 96.6 0.0027 5.8E-08 66.6 5.2 74 174-266 98-171 (254)
224 PRK06921 hypothetical protein; 96.6 0.0063 1.4E-07 64.4 7.8 71 173-263 116-186 (266)
225 KOG2228 Origin recognition com 96.5 0.036 7.8E-07 58.0 12.7 168 153-322 24-220 (408)
226 KOG1969 DNA replication checkp 96.5 0.0056 1.2E-07 70.2 7.5 75 173-266 325-399 (877)
227 TIGR02237 recomb_radB DNA repa 96.5 0.0093 2E-07 61.3 8.7 46 174-222 12-57 (209)
228 TIGR01243 CDC48 AAA family ATP 96.5 0.023 4.9E-07 70.2 13.2 174 151-347 176-383 (733)
229 PF13207 AAA_17: AAA domain; P 96.5 0.0026 5.6E-08 58.8 3.7 24 176-199 1-24 (121)
230 PRK04132 replication factor C 96.5 0.047 1E-06 66.4 15.2 154 182-352 574-732 (846)
231 KOG2123 Uncharacterized conser 96.5 0.00022 4.8E-09 71.6 -3.6 105 550-662 18-123 (388)
232 PRK09183 transposase/IS protei 96.4 0.0078 1.7E-07 63.6 7.5 26 174-199 102-127 (259)
233 PF13177 DNA_pol3_delta2: DNA 96.4 0.019 4.1E-07 55.9 9.6 119 157-293 1-143 (162)
234 PRK07993 DNA polymerase III su 96.4 0.077 1.7E-06 58.2 15.3 176 161-349 10-202 (334)
235 CHL00095 clpC Clp protease ATP 96.4 0.015 3.2E-07 72.5 11.0 132 153-292 509-662 (821)
236 KOG0733 Nuclear AAA ATPase (VC 96.4 0.053 1.1E-06 61.2 13.7 128 174-322 545-693 (802)
237 PRK06964 DNA polymerase III su 96.4 0.13 2.8E-06 56.2 16.8 101 242-351 116-225 (342)
238 PRK00771 signal recognition pa 96.4 0.11 2.3E-06 58.9 16.6 88 173-264 94-185 (437)
239 PF03215 Rad17: Rad17 cell cyc 96.4 0.017 3.7E-07 66.8 10.4 57 152-212 18-79 (519)
240 KOG0730 AAA+-type ATPase [Post 96.3 0.051 1.1E-06 62.2 13.5 175 148-345 429-637 (693)
241 COG1875 NYN ribonuclease and A 96.3 0.0099 2.1E-07 62.8 7.2 54 154-207 225-279 (436)
242 COG0470 HolB ATPase involved i 96.3 0.024 5.3E-07 62.9 11.1 136 155-307 3-167 (325)
243 TIGR01425 SRP54_euk signal rec 96.3 0.23 5E-06 55.8 18.3 38 173-212 99-136 (429)
244 smart00763 AAA_PrkA PrkA AAA d 96.3 0.0059 1.3E-07 66.1 5.6 47 154-200 52-104 (361)
245 cd01123 Rad51_DMC1_radA Rad51_ 96.3 0.018 3.9E-07 60.4 9.3 57 173-230 18-78 (235)
246 COG2812 DnaX DNA polymerase II 96.3 0.026 5.7E-07 64.3 10.9 187 152-346 15-215 (515)
247 KOG2982 Uncharacterized conser 96.2 0.0022 4.8E-08 65.3 2.0 58 527-584 70-132 (418)
248 TIGR02012 tigrfam_recA protein 96.2 0.017 3.7E-07 62.2 8.8 85 173-264 54-143 (321)
249 PRK05541 adenylylsulfate kinas 96.2 0.0098 2.1E-07 59.1 6.6 36 173-210 6-41 (176)
250 PRK14722 flhF flagellar biosyn 96.2 0.024 5.2E-07 62.4 10.0 89 174-265 137-226 (374)
251 KOG2739 Leucine-rich acidic nu 96.2 0.003 6.4E-08 63.8 2.7 78 552-632 44-127 (260)
252 PF07693 KAP_NTPase: KAP famil 96.2 0.27 5.9E-06 54.5 18.8 43 159-201 2-47 (325)
253 PRK06696 uridine kinase; Valid 96.2 0.0074 1.6E-07 62.5 5.8 44 157-200 2-48 (223)
254 PRK07952 DNA replication prote 96.2 0.036 7.7E-07 57.6 10.6 89 161-266 84-174 (244)
255 PF05659 RPW8: Arabidopsis bro 96.2 0.051 1.1E-06 51.2 10.5 112 2-127 3-115 (147)
256 KOG0735 AAA+-type ATPase [Post 96.1 0.034 7.3E-07 63.8 10.8 151 174-344 431-608 (952)
257 PF01695 IstB_IS21: IstB-like 96.1 0.006 1.3E-07 60.3 4.4 75 173-266 46-120 (178)
258 cd00983 recA RecA is a bacter 96.1 0.02 4.4E-07 61.7 8.6 85 173-264 54-143 (325)
259 cd01393 recA_like RecA is a b 96.1 0.034 7.4E-07 57.9 10.3 54 174-228 19-76 (226)
260 KOG0728 26S proteasome regulat 96.1 0.11 2.4E-06 51.8 12.6 145 156-321 150-331 (404)
261 PRK11034 clpA ATP-dependent Cl 96.1 0.019 4.2E-07 69.6 9.1 102 154-266 459-569 (758)
262 TIGR03499 FlhF flagellar biosy 96.0 0.033 7.2E-07 59.7 10.0 88 173-263 193-281 (282)
263 PRK09354 recA recombinase A; P 96.0 0.025 5.4E-07 61.4 8.9 85 173-264 59-148 (349)
264 cd01120 RecA-like_NTPases RecA 96.0 0.033 7.2E-07 54.5 9.3 40 176-217 1-40 (165)
265 PRK10733 hflB ATP-dependent me 96.0 0.053 1.1E-06 65.4 12.2 147 175-344 186-356 (644)
266 COG1618 Predicted nucleotide k 96.0 0.01 2.2E-07 55.2 4.7 28 175-202 6-33 (179)
267 PRK04296 thymidine kinase; Pro 96.0 0.012 2.5E-07 59.2 5.6 111 175-293 3-117 (190)
268 PRK11889 flhF flagellar biosyn 95.9 0.068 1.5E-06 58.5 11.6 90 173-265 240-331 (436)
269 PRK10867 signal recognition pa 95.9 0.39 8.5E-06 54.3 18.2 29 173-201 99-127 (433)
270 cd01133 F1-ATPase_beta F1 ATP 95.9 0.055 1.2E-06 56.7 10.6 93 173-266 68-175 (274)
271 PTZ00494 tuzin-like protein; P 95.9 3.6 7.9E-05 45.5 24.2 164 149-321 367-544 (664)
272 PRK08699 DNA polymerase III su 95.9 0.12 2.5E-06 56.6 13.5 87 253-348 112-203 (325)
273 TIGR02238 recomb_DMC1 meiotic 95.9 0.033 7.2E-07 60.3 9.1 59 173-232 95-157 (313)
274 PRK09361 radB DNA repair and r 95.9 0.031 6.8E-07 58.1 8.6 45 174-221 23-67 (225)
275 KOG0743 AAA+-type ATPase [Post 95.8 0.18 3.8E-06 55.6 14.2 150 175-357 236-415 (457)
276 COG5238 RNA1 Ran GTPase-activa 95.8 0.0033 7.2E-08 63.2 1.0 107 526-633 28-169 (388)
277 PRK06835 DNA replication prote 95.8 0.033 7.2E-07 60.7 8.8 37 175-213 184-220 (329)
278 PRK09270 nucleoside triphospha 95.8 0.059 1.3E-06 56.1 10.3 30 172-201 31-60 (229)
279 TIGR02858 spore_III_AA stage I 95.8 0.026 5.6E-07 59.6 7.6 123 163-296 99-233 (270)
280 KOG2123 Uncharacterized conser 95.7 0.00063 1.4E-08 68.4 -4.3 100 527-627 18-123 (388)
281 cd03115 SRP The signal recogni 95.7 0.053 1.2E-06 53.7 9.2 53 176-230 2-55 (173)
282 KOG2035 Replication factor C, 95.7 0.26 5.7E-06 50.3 13.7 206 154-373 14-260 (351)
283 PF08423 Rad51: Rad51; InterP 95.7 0.077 1.7E-06 55.9 10.7 57 174-231 38-98 (256)
284 PHA02244 ATPase-like protein 95.7 0.051 1.1E-06 59.0 9.3 36 162-199 109-144 (383)
285 PF01583 APS_kinase: Adenylyls 95.6 0.0087 1.9E-07 56.8 2.9 36 174-211 2-37 (156)
286 TIGR03877 thermo_KaiC_1 KaiC d 95.6 0.089 1.9E-06 55.0 10.8 48 173-224 20-67 (237)
287 cd02027 APSK Adenosine 5'-phos 95.6 0.067 1.5E-06 51.3 9.0 24 176-199 1-24 (149)
288 PRK14974 cell division protein 95.6 0.15 3.2E-06 55.7 12.6 92 173-266 139-234 (336)
289 COG0464 SpoVK ATPases of the A 95.5 0.18 3.9E-06 59.5 14.3 150 173-343 275-445 (494)
290 cd03214 ABC_Iron-Siderophores_ 95.5 0.065 1.4E-06 53.4 9.1 127 173-303 24-169 (180)
291 PRK12726 flagellar biosynthesi 95.5 0.08 1.7E-06 57.7 10.1 90 173-265 205-296 (407)
292 PRK06547 hypothetical protein; 95.5 0.02 4.4E-07 56.1 5.2 36 164-199 5-40 (172)
293 PRK12723 flagellar biosynthesi 95.5 0.11 2.4E-06 57.8 11.5 90 173-265 173-265 (388)
294 PLN00020 ribulose bisphosphate 95.5 0.04 8.7E-07 59.3 7.5 27 173-199 147-173 (413)
295 COG2607 Predicted ATPase (AAA+ 95.4 0.1 2.2E-06 52.2 9.4 116 150-292 57-183 (287)
296 PRK07667 uridine kinase; Provi 95.4 0.023 4.9E-07 57.3 5.4 38 163-200 4-43 (193)
297 cd01394 radB RadB. The archaea 95.4 0.057 1.2E-06 55.9 8.4 43 173-217 18-60 (218)
298 COG1102 Cmk Cytidylate kinase 95.4 0.054 1.2E-06 50.6 7.1 45 176-233 2-46 (179)
299 TIGR00064 ftsY signal recognit 95.4 0.11 2.5E-06 55.1 10.7 91 172-265 70-165 (272)
300 COG4088 Predicted nucleotide k 95.4 0.064 1.4E-06 52.1 7.8 26 175-200 2-27 (261)
301 COG0541 Ffh Signal recognition 95.4 2 4.2E-05 47.5 19.9 59 173-233 99-158 (451)
302 PRK12724 flagellar biosynthesi 95.4 0.05 1.1E-06 60.3 8.1 85 174-263 223-308 (432)
303 COG1419 FlhF Flagellar GTP-bin 95.4 0.16 3.5E-06 55.6 11.8 99 162-264 187-291 (407)
304 KOG0736 Peroxisome assembly fa 95.3 0.37 8E-06 56.3 15.0 167 152-343 671-877 (953)
305 PF13604 AAA_30: AAA domain; P 95.3 0.052 1.1E-06 54.8 7.6 38 163-201 8-45 (196)
306 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.3 0.054 1.2E-06 51.6 7.4 110 174-303 26-138 (144)
307 PRK08533 flagellar accessory p 95.3 0.1 2.2E-06 54.2 9.9 53 173-230 23-75 (230)
308 cd03222 ABC_RNaseL_inhibitor T 95.3 0.044 9.5E-07 54.0 6.8 110 173-305 24-145 (177)
309 cd03223 ABCD_peroxisomal_ALDP 95.3 0.072 1.6E-06 52.2 8.3 124 173-304 26-159 (166)
310 cd03247 ABCC_cytochrome_bd The 95.3 0.055 1.2E-06 53.8 7.6 26 174-199 28-53 (178)
311 TIGR01359 UMP_CMP_kin_fam UMP- 95.2 0.075 1.6E-06 53.2 8.6 24 176-199 1-24 (183)
312 PRK15455 PrkA family serine pr 95.2 0.026 5.5E-07 64.5 5.5 46 154-199 77-128 (644)
313 PF00560 LRR_1: Leucine Rich R 95.2 0.0073 1.6E-07 36.2 0.7 21 574-594 1-21 (22)
314 KOG2739 Leucine-rich acidic nu 95.2 0.0098 2.1E-07 60.2 2.0 102 526-628 41-150 (260)
315 PRK05703 flhF flagellar biosyn 95.2 0.16 3.4E-06 57.8 11.8 87 174-263 221-308 (424)
316 PRK04301 radA DNA repair and r 95.2 0.1 2.2E-06 57.3 10.1 58 173-231 101-162 (317)
317 PF13238 AAA_18: AAA domain; P 95.2 0.017 3.6E-07 54.0 3.4 22 177-198 1-22 (129)
318 TIGR00554 panK_bact pantothena 95.2 0.11 2.4E-06 55.4 9.8 28 172-199 60-87 (290)
319 PLN03186 DNA repair protein RA 95.2 0.076 1.7E-06 58.1 8.8 59 173-232 122-184 (342)
320 PF07728 AAA_5: AAA domain (dy 95.2 0.047 1E-06 51.8 6.4 76 177-266 2-77 (139)
321 PF00154 RecA: recA bacterial 95.2 0.12 2.6E-06 55.6 10.0 86 174-266 53-143 (322)
322 PLN03187 meiotic recombination 95.1 0.14 3.1E-06 55.9 10.8 59 173-232 125-187 (344)
323 PRK07132 DNA polymerase III su 95.1 0.43 9.4E-06 51.3 14.2 164 163-350 6-184 (299)
324 COG3640 CooC CO dehydrogenase 95.1 0.039 8.4E-07 55.0 5.7 51 176-234 2-52 (255)
325 cd02025 PanK Pantothenate kina 95.1 0.1 2.2E-06 53.7 9.2 24 176-199 1-24 (220)
326 COG1066 Sms Predicted ATP-depe 95.1 0.093 2E-06 56.9 8.9 86 174-265 93-179 (456)
327 TIGR02239 recomb_RAD51 DNA rep 95.1 0.074 1.6E-06 57.9 8.5 58 173-231 95-156 (316)
328 PF00485 PRK: Phosphoribulokin 95.1 0.021 4.5E-07 57.8 4.0 25 176-200 1-25 (194)
329 cd01131 PilT Pilus retraction 95.1 0.042 9.2E-07 55.6 6.3 110 175-295 2-112 (198)
330 cd03281 ABC_MSH5_euk MutS5 hom 95.1 0.13 2.9E-06 52.5 9.9 117 174-297 29-159 (213)
331 KOG0727 26S proteasome regulat 95.1 0.17 3.7E-06 50.5 9.9 96 150-266 152-260 (408)
332 KOG0652 26S proteasome regulat 95.1 0.55 1.2E-05 47.2 13.4 52 148-199 166-230 (424)
333 TIGR02974 phageshock_pspF psp 95.0 0.37 8E-06 53.0 13.8 44 156-199 2-47 (329)
334 PF00006 ATP-synt_ab: ATP synt 95.0 0.072 1.6E-06 54.1 7.6 96 165-264 5-115 (215)
335 COG0465 HflB ATP-dependent Zn 95.0 0.12 2.6E-06 59.9 10.2 172 152-346 149-356 (596)
336 cd01121 Sms Sms (bacterial rad 95.0 0.092 2E-06 58.4 9.0 86 174-264 82-168 (372)
337 KOG0744 AAA+-type ATPase [Post 95.0 0.061 1.3E-06 55.9 6.8 27 175-201 178-204 (423)
338 TIGR00959 ffh signal recogniti 95.0 0.23 5E-06 56.1 12.2 90 173-264 98-192 (428)
339 PRK13531 regulatory ATPase Rav 95.0 0.037 8E-07 62.4 5.7 49 154-204 21-69 (498)
340 cd02019 NK Nucleoside/nucleoti 95.0 0.022 4.8E-07 46.2 3.1 23 176-198 1-23 (69)
341 PRK06067 flagellar accessory p 95.0 0.14 3E-06 53.6 9.9 49 173-225 24-72 (234)
342 COG4608 AppF ABC-type oligopep 94.9 0.11 2.4E-06 53.5 8.6 122 173-299 38-177 (268)
343 cd00561 CobA_CobO_BtuR ATP:cor 94.9 0.28 6.1E-06 46.9 10.9 117 175-293 3-139 (159)
344 PRK11608 pspF phage shock prot 94.9 0.12 2.5E-06 57.0 9.6 60 154-215 7-68 (326)
345 cd03238 ABC_UvrA The excision 94.9 0.1 2.3E-06 51.3 8.2 113 173-296 20-153 (176)
346 COG0488 Uup ATPase components 94.9 0.38 8.3E-06 56.0 14.0 132 174-307 348-511 (530)
347 PRK04328 hypothetical protein; 94.9 0.12 2.6E-06 54.4 9.2 41 173-215 22-62 (249)
348 TIGR02236 recomb_radA DNA repa 94.9 0.15 3.3E-06 55.9 10.4 58 173-231 94-155 (310)
349 PRK05439 pantothenate kinase; 94.9 0.18 3.9E-06 54.2 10.4 28 172-199 84-111 (311)
350 PTZ00035 Rad51 protein; Provis 94.8 0.15 3.3E-06 56.0 10.1 58 173-231 117-178 (337)
351 KOG0729 26S proteasome regulat 94.8 0.16 3.4E-06 51.1 9.1 95 149-264 173-280 (435)
352 PF12775 AAA_7: P-loop contain 94.8 0.021 4.4E-07 60.7 3.2 88 163-264 23-110 (272)
353 COG0468 RecA RecA/RadA recombi 94.8 0.2 4.4E-06 52.7 10.4 89 173-264 59-151 (279)
354 cd03216 ABC_Carb_Monos_I This 94.8 0.038 8.1E-07 54.0 4.8 123 173-303 25-153 (163)
355 TIGR03878 thermo_KaiC_2 KaiC d 94.8 0.13 2.8E-06 54.5 9.2 41 173-215 35-75 (259)
356 PRK15429 formate hydrogenlyase 94.8 0.33 7.3E-06 59.6 14.0 62 152-215 375-438 (686)
357 PRK05480 uridine/cytidine kina 94.7 0.03 6.5E-07 57.5 4.1 27 172-198 4-30 (209)
358 PRK08233 hypothetical protein; 94.7 0.026 5.7E-07 56.5 3.6 26 174-199 3-28 (182)
359 COG1703 ArgK Putative periplas 94.7 0.059 1.3E-06 55.9 6.0 65 163-227 38-104 (323)
360 cd03228 ABCC_MRP_Like The MRP 94.7 0.073 1.6E-06 52.5 6.6 27 173-199 27-53 (171)
361 PF03308 ArgK: ArgK protein; 94.7 0.072 1.6E-06 54.5 6.5 61 162-222 15-77 (266)
362 COG1121 ZnuC ABC-type Mn/Zn tr 94.7 0.15 3.3E-06 52.5 8.9 122 174-297 30-204 (254)
363 COG1428 Deoxynucleoside kinase 94.7 0.026 5.6E-07 55.5 3.2 26 174-199 4-29 (216)
364 TIGR00235 udk uridine kinase. 94.7 0.032 6.9E-07 57.1 4.1 28 172-199 4-31 (207)
365 TIGR01817 nifA Nif-specific re 94.7 0.18 3.8E-06 60.0 10.9 64 150-215 193-258 (534)
366 PF14532 Sigma54_activ_2: Sigm 94.6 0.015 3.2E-07 55.1 1.4 43 157-199 2-46 (138)
367 cd01124 KaiC KaiC is a circadi 94.6 0.11 2.4E-06 52.2 7.8 45 176-224 1-45 (187)
368 cd03283 ABC_MutS-like MutS-lik 94.6 0.15 3.3E-06 51.5 8.7 24 175-198 26-49 (199)
369 KOG3864 Uncharacterized conser 94.6 0.005 1.1E-07 59.5 -1.9 88 914-1013 102-189 (221)
370 PF13671 AAA_33: AAA domain; P 94.6 0.032 6.9E-07 53.2 3.6 24 176-199 1-24 (143)
371 PRK06762 hypothetical protein; 94.5 0.033 7.2E-07 54.7 3.8 25 174-198 2-26 (166)
372 PF13481 AAA_25: AAA domain; P 94.5 0.22 4.8E-06 50.3 9.9 41 175-215 33-81 (193)
373 PTZ00301 uridine kinase; Provi 94.5 0.035 7.6E-07 56.3 3.9 26 174-199 3-28 (210)
374 COG0572 Udk Uridine kinase [Nu 94.5 0.038 8.2E-07 55.2 4.0 28 173-200 7-34 (218)
375 PRK12597 F0F1 ATP synthase sub 94.5 0.098 2.1E-06 59.3 7.7 93 173-266 142-249 (461)
376 COG0563 Adk Adenylate kinase a 94.5 0.067 1.5E-06 52.7 5.6 24 176-199 2-25 (178)
377 PF00910 RNA_helicase: RNA hel 94.5 0.03 6.4E-07 50.2 2.9 24 177-200 1-24 (107)
378 cd01135 V_A-ATPase_B V/A-type 94.5 0.27 5.9E-06 51.5 10.2 94 173-266 68-178 (276)
379 cd03230 ABC_DR_subfamily_A Thi 94.5 0.11 2.4E-06 51.4 7.2 122 174-304 26-167 (173)
380 PF02562 PhoH: PhoH-like prote 94.5 0.049 1.1E-06 54.5 4.6 52 158-211 5-56 (205)
381 COG1120 FepC ABC-type cobalami 94.5 0.25 5.4E-06 51.2 9.9 133 173-306 27-213 (258)
382 PRK14723 flhF flagellar biosyn 94.5 0.3 6.5E-06 58.7 11.9 88 174-264 185-273 (767)
383 COG1126 GlnQ ABC-type polar am 94.4 0.16 3.4E-06 50.2 7.8 128 173-306 27-210 (240)
384 KOG0738 AAA+-type ATPase [Post 94.4 0.1 2.2E-06 55.8 7.0 26 174-199 245-270 (491)
385 PRK14721 flhF flagellar biosyn 94.4 0.27 5.9E-06 55.2 10.9 88 173-263 190-278 (420)
386 KOG0651 26S proteasome regulat 94.4 0.12 2.5E-06 53.7 7.1 48 153-200 132-192 (388)
387 cd03246 ABCC_Protease_Secretio 94.4 0.096 2.1E-06 51.8 6.6 27 173-199 27-53 (173)
388 PF06309 Torsin: Torsin; Inte 94.4 0.33 7.1E-06 44.0 9.1 45 155-199 27-78 (127)
389 PRK06995 flhF flagellar biosyn 94.3 0.23 5E-06 56.8 10.2 88 174-264 256-344 (484)
390 PRK03839 putative kinase; Prov 94.3 0.037 8.1E-07 55.2 3.6 24 176-199 2-25 (180)
391 CHL00206 ycf2 Ycf2; Provisiona 94.3 0.16 3.6E-06 65.5 9.7 26 174-199 1630-1655(2281)
392 PF03205 MobB: Molybdopterin g 94.3 0.048 1E-06 51.4 4.0 39 175-214 1-39 (140)
393 PF08433 KTI12: Chromatin asso 94.3 0.033 7.3E-07 58.8 3.3 26 175-200 2-27 (270)
394 KOG1970 Checkpoint RAD17-RFC c 94.3 0.4 8.8E-06 53.9 11.4 42 158-199 87-135 (634)
395 PRK08972 fliI flagellum-specif 94.2 0.13 2.9E-06 57.4 7.9 90 173-266 161-264 (444)
396 COG0003 ArsA Predicted ATPase 94.2 0.094 2E-06 56.6 6.5 49 174-224 2-50 (322)
397 TIGR03575 selen_PSTK_euk L-ser 94.2 0.22 4.8E-06 54.3 9.3 24 177-200 2-25 (340)
398 TIGR01360 aden_kin_iso1 adenyl 94.2 0.043 9.3E-07 55.2 3.7 26 173-198 2-27 (188)
399 TIGR00390 hslU ATP-dependent p 94.1 0.13 2.8E-06 56.9 7.4 46 154-199 13-72 (441)
400 TIGR00455 apsK adenylylsulfate 94.1 0.21 4.6E-06 50.0 8.5 28 172-199 16-43 (184)
401 PRK00625 shikimate kinase; Pro 94.1 0.043 9.3E-07 53.9 3.4 24 176-199 2-25 (173)
402 PF06745 KaiC: KaiC; InterPro 94.1 0.073 1.6E-06 55.4 5.4 87 173-263 18-124 (226)
403 TIGR02655 circ_KaiC circadian 94.1 0.19 4.1E-06 58.6 9.3 86 173-263 262-362 (484)
404 PRK03846 adenylylsulfate kinas 94.0 0.12 2.6E-06 52.4 6.6 29 171-199 21-49 (198)
405 PRK13765 ATP-dependent proteas 94.0 0.1 2.2E-06 62.0 6.9 78 150-231 28-105 (637)
406 COG3854 SpoIIIAA ncharacterize 94.0 0.19 4.1E-06 49.8 7.4 117 165-294 128-255 (308)
407 PRK04040 adenylate kinase; Pro 94.0 0.05 1.1E-06 54.3 3.7 25 175-199 3-27 (188)
408 TIGR03305 alt_F1F0_F1_bet alte 94.0 0.28 6.1E-06 55.3 9.8 93 173-266 137-244 (449)
409 cd00267 ABC_ATPase ABC (ATP-bi 93.9 0.12 2.5E-06 50.3 6.1 119 174-303 25-151 (157)
410 PF07726 AAA_3: ATPase family 93.9 0.036 7.9E-07 50.1 2.3 27 177-205 2-28 (131)
411 cd02021 GntK Gluconate kinase 93.9 0.36 7.8E-06 46.4 9.5 23 176-198 1-23 (150)
412 KOG3347 Predicted nucleotide k 93.9 0.081 1.7E-06 48.5 4.4 41 174-221 7-47 (176)
413 PRK12678 transcription termina 93.9 0.11 2.3E-06 59.4 6.2 93 173-266 415-515 (672)
414 PRK08927 fliI flagellum-specif 93.9 0.33 7.2E-06 54.6 10.2 90 173-266 157-260 (442)
415 TIGR00150 HI0065_YjeE ATPase, 93.9 0.11 2.3E-06 48.1 5.3 27 174-200 22-48 (133)
416 PRK10751 molybdopterin-guanine 93.9 0.065 1.4E-06 52.1 4.0 28 173-200 5-32 (173)
417 PRK00131 aroK shikimate kinase 93.8 0.056 1.2E-06 53.6 3.8 27 173-199 3-29 (175)
418 KOG0726 26S proteasome regulat 93.8 0.36 7.7E-06 49.5 9.1 96 148-265 180-289 (440)
419 cd03233 ABC_PDR_domain1 The pl 93.8 0.37 7.9E-06 49.0 9.7 27 173-199 32-58 (202)
420 cd03287 ABC_MSH3_euk MutS3 hom 93.7 0.2 4.3E-06 51.4 7.6 111 173-298 30-160 (222)
421 PTZ00185 ATPase alpha subunit; 93.7 0.4 8.6E-06 54.3 10.2 93 173-266 188-301 (574)
422 PF13245 AAA_19: Part of AAA d 93.6 0.19 4.1E-06 41.5 5.8 26 173-198 9-35 (76)
423 PRK00889 adenylylsulfate kinas 93.6 0.078 1.7E-06 52.6 4.3 28 173-200 3-30 (175)
424 TIGR01069 mutS2 MutS2 family p 93.6 0.21 4.5E-06 61.3 8.7 186 173-372 321-521 (771)
425 PRK09519 recA DNA recombinatio 93.6 0.3 6.5E-06 58.9 9.8 85 173-264 59-148 (790)
426 cd03282 ABC_MSH4_euk MutS4 hom 93.6 0.29 6.2E-06 49.6 8.4 117 174-299 29-158 (204)
427 KOG1051 Chaperone HSP104 and r 93.6 0.39 8.5E-06 58.4 10.7 102 154-266 563-672 (898)
428 cd00544 CobU Adenosylcobinamid 93.6 0.3 6.5E-06 47.7 8.2 80 177-263 2-82 (169)
429 PF02374 ArsA_ATPase: Anion-tr 93.6 0.11 2.4E-06 56.2 5.7 46 175-222 2-47 (305)
430 PRK09280 F0F1 ATP synthase sub 93.6 0.42 9E-06 54.1 10.3 93 173-266 143-250 (463)
431 PF13306 LRR_5: Leucine rich r 93.6 0.23 5.1E-06 46.1 7.3 106 519-630 3-112 (129)
432 PF00560 LRR_1: Leucine Rich R 93.5 0.036 7.8E-07 33.2 1.1 21 529-549 1-21 (22)
433 PRK08149 ATP synthase SpaL; Va 93.5 0.2 4.4E-06 56.2 7.7 90 173-266 150-253 (428)
434 PRK00409 recombination and DNA 93.5 0.36 7.7E-06 59.5 10.5 177 172-372 325-526 (782)
435 PRK05342 clpX ATP-dependent pr 93.5 0.11 2.3E-06 58.6 5.6 46 154-199 72-133 (412)
436 COG0529 CysC Adenylylsulfate k 93.5 0.14 3E-06 48.7 5.3 32 170-201 19-50 (197)
437 TIGR03881 KaiC_arch_4 KaiC dom 93.5 0.62 1.3E-05 48.5 11.1 53 173-230 19-71 (229)
438 PRK11823 DNA repair protein Ra 93.5 0.2 4.3E-06 57.5 7.9 86 174-264 80-166 (446)
439 TIGR01040 V-ATPase_V1_B V-type 93.5 0.23 4.9E-06 55.8 7.9 94 173-266 140-259 (466)
440 PRK05022 anaerobic nitric oxid 93.5 0.21 4.6E-06 58.7 8.3 63 152-216 186-250 (509)
441 cd01134 V_A-ATPase_A V/A-type 93.4 0.42 9.1E-06 51.6 9.5 59 164-226 146-206 (369)
442 cd01125 repA Hexameric Replica 93.4 0.41 9E-06 50.2 9.6 54 176-229 3-67 (239)
443 cd02024 NRK1 Nicotinamide ribo 93.4 0.058 1.3E-06 53.5 3.0 23 176-198 1-23 (187)
444 cd01122 GP4d_helicase GP4d_hel 93.4 0.52 1.1E-05 50.6 10.6 52 174-228 30-81 (271)
445 PRK09435 membrane ATPase/prote 93.4 0.65 1.4E-05 50.6 11.2 39 163-201 43-83 (332)
446 PRK06217 hypothetical protein; 93.4 0.063 1.4E-06 53.7 3.2 24 176-199 3-26 (183)
447 KOG1532 GTPase XAB1, interacts 93.4 0.096 2.1E-06 53.1 4.4 63 173-235 18-89 (366)
448 KOG0735 AAA+-type ATPase [Post 93.3 1.9 4E-05 50.3 14.7 172 153-347 667-872 (952)
449 cd02023 UMPK Uridine monophosp 93.3 0.058 1.3E-06 54.8 2.9 23 176-198 1-23 (198)
450 COG4240 Predicted kinase [Gene 93.3 0.56 1.2E-05 46.5 9.3 82 171-254 47-133 (300)
451 TIGR02322 phosphon_PhnN phosph 93.3 0.073 1.6E-06 53.1 3.5 25 175-199 2-26 (179)
452 TIGR02329 propionate_PrpR prop 93.3 0.97 2.1E-05 52.9 13.1 46 153-198 212-259 (526)
453 cd00227 CPT Chloramphenicol (C 93.2 0.077 1.7E-06 52.6 3.6 25 175-199 3-27 (175)
454 PRK06851 hypothetical protein; 93.2 0.76 1.6E-05 50.6 11.4 43 172-215 212-254 (367)
455 TIGR01039 atpD ATP synthase, F 93.2 0.61 1.3E-05 52.6 10.8 93 173-266 142-249 (461)
456 cd02029 PRK_like Phosphoribulo 93.2 0.38 8.2E-06 50.0 8.5 25 176-200 1-25 (277)
457 PRK15453 phosphoribulokinase; 93.2 0.58 1.2E-05 49.1 9.8 28 172-199 3-30 (290)
458 COG1084 Predicted GTPase [Gene 93.2 2.6 5.6E-05 44.7 14.4 27 171-197 165-191 (346)
459 COG1224 TIP49 DNA helicase TIP 93.2 0.32 7E-06 51.6 7.9 55 152-206 38-97 (450)
460 cd02020 CMPK Cytidine monophos 93.1 0.072 1.6E-06 51.0 3.1 24 176-199 1-24 (147)
461 TIGR00764 lon_rel lon-related 93.1 0.21 4.6E-06 59.6 7.5 76 152-231 17-92 (608)
462 PF00625 Guanylate_kin: Guanyl 93.1 0.12 2.5E-06 51.7 4.7 36 174-211 2-37 (183)
463 TIGR00416 sms DNA repair prote 93.1 0.27 5.9E-06 56.4 8.2 87 173-264 93-180 (454)
464 PRK05201 hslU ATP-dependent pr 93.1 0.21 4.5E-06 55.3 6.8 46 154-199 16-75 (443)
465 cd02028 UMPK_like Uridine mono 93.1 0.077 1.7E-06 52.7 3.3 24 176-199 1-24 (179)
466 PF10236 DAP3: Mitochondrial r 93.1 2.7 5.8E-05 45.8 15.4 47 302-348 258-306 (309)
467 PRK13947 shikimate kinase; Pro 93.1 0.078 1.7E-06 52.4 3.3 24 176-199 3-26 (171)
468 CHL00081 chlI Mg-protoporyphyr 93.1 0.13 2.9E-06 56.2 5.3 49 151-199 15-63 (350)
469 PRK05973 replicative DNA helic 93.1 0.56 1.2E-05 48.4 9.5 49 173-225 63-111 (237)
470 PRK06002 fliI flagellum-specif 93.0 0.26 5.7E-06 55.5 7.6 91 173-266 164-266 (450)
471 PRK13949 shikimate kinase; Pro 93.0 0.08 1.7E-06 52.0 3.2 24 176-199 3-26 (169)
472 PTZ00088 adenylate kinase 1; P 93.0 0.32 6.9E-06 50.2 7.8 24 176-199 8-31 (229)
473 cd02117 NifH_like This family 93.0 0.096 2.1E-06 53.8 4.0 28 175-202 1-28 (212)
474 TIGR01287 nifH nitrogenase iro 93.0 0.14 3.1E-06 55.0 5.5 37 175-213 1-37 (275)
475 PRK15424 propionate catabolism 93.0 1.3 2.9E-05 51.8 13.6 45 153-197 219-265 (538)
476 TIGR01041 ATP_syn_B_arch ATP s 93.0 0.49 1.1E-05 53.8 9.8 94 173-266 140-250 (458)
477 PF02456 Adeno_IVa2: Adenoviru 93.0 0.49 1.1E-05 49.2 8.8 40 174-213 87-126 (369)
478 TIGR02030 BchI-ChlI magnesium 93.0 0.16 3.4E-06 55.7 5.7 46 153-198 4-49 (337)
479 COG0467 RAD55 RecA-superfamily 92.9 0.15 3.2E-06 54.3 5.5 51 172-226 21-71 (260)
480 TIGR00708 cobA cob(I)alamin ad 92.9 0.44 9.5E-06 46.2 8.0 117 174-292 5-140 (173)
481 TIGR00073 hypB hydrogenase acc 92.9 0.11 2.4E-06 53.1 4.2 33 167-199 15-47 (207)
482 cd03285 ABC_MSH2_euk MutS2 hom 92.9 0.12 2.5E-06 53.3 4.4 172 173-357 29-219 (222)
483 cd03243 ABC_MutS_homologs The 92.9 0.29 6.2E-06 49.8 7.2 23 175-197 30-52 (202)
484 TIGR03522 GldA_ABC_ATP gliding 92.8 0.31 6.8E-06 53.1 7.9 26 173-198 27-52 (301)
485 TIGR00176 mobB molybdopterin-g 92.8 0.096 2.1E-06 50.4 3.4 26 176-201 1-26 (155)
486 COG1763 MobB Molybdopterin-gua 92.8 0.1 2.3E-06 49.9 3.6 29 174-202 2-30 (161)
487 PF13504 LRR_7: Leucine rich r 92.8 0.066 1.4E-06 29.6 1.3 16 574-589 2-17 (17)
488 cd03369 ABCC_NFT1 Domain 2 of 92.8 0.72 1.6E-05 47.1 10.1 26 173-198 33-58 (207)
489 COG1124 DppF ABC-type dipeptid 92.8 0.087 1.9E-06 53.0 3.1 27 173-199 32-58 (252)
490 PRK10463 hydrogenase nickel in 92.8 0.17 3.7E-06 53.5 5.4 35 165-199 95-129 (290)
491 PRK14530 adenylate kinase; Pro 92.7 0.098 2.1E-06 53.9 3.6 25 175-199 4-28 (215)
492 CHL00060 atpB ATP synthase CF1 92.7 0.42 9.2E-06 54.3 8.7 93 173-266 160-274 (494)
493 cd01132 F1_ATPase_alpha F1 ATP 92.7 0.28 6.1E-06 51.3 6.8 96 173-272 68-180 (274)
494 TIGR00382 clpX endopeptidase C 92.7 0.38 8.3E-06 54.0 8.3 47 153-199 77-141 (413)
495 PRK12339 2-phosphoglycerate ki 92.7 0.11 2.4E-06 52.1 3.8 25 174-198 3-27 (197)
496 COG1936 Predicted nucleotide k 92.6 0.095 2.1E-06 49.8 3.0 20 176-195 2-21 (180)
497 PF03193 DUF258: Protein of un 92.6 0.18 3.8E-06 48.3 4.8 35 161-198 25-59 (161)
498 KOG0924 mRNA splicing factor A 92.6 0.4 8.7E-06 54.8 8.2 124 162-293 361-511 (1042)
499 cd01136 ATPase_flagellum-secre 92.6 0.54 1.2E-05 50.9 9.1 90 173-266 68-171 (326)
500 PF13086 AAA_11: AAA domain; P 92.6 0.28 6.1E-06 51.3 7.0 36 161-198 6-41 (236)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-80 Score=741.35 Aligned_cols=621 Identities=30% Similarity=0.484 Sum_probs=483.1
Q ss_pred hhhhhhhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhhhhHHHhhc-
Q 037851 16 LFPPIGRQLSYVRNYKANLENLKKETEKLTDASDSMQKKVDDARRNGEEINKRVESWLISADKIVAEADTLTGEEENAN- 94 (1053)
Q Consensus 16 l~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~l~~i~~~l~~a~~~~~~~~~~~~~wl~~~~~~~~~~ed~ld~~~~~~- 94 (1053)
++..+.++...+.+. ++.+..|+..+..++.++++++++ +.....++.|...+++++|+++|.++.+.-..
T Consensus 12 ~~~~l~~~~~~~~~~-------~~~i~~Lk~~L~~l~~~l~d~~a~-~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~ 83 (889)
T KOG4658|consen 12 LDQLLNRESECLDGK-------DNYILELKENLKALQSALEDLDAK-RDDLERRVNWEEDVGDLVYLAEDIIWLFLVEEI 83 (889)
T ss_pred HHHHHHHHHHHHhch-------HHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444 445556666666666677888777 44567889999999999999999886543110
Q ss_pred -------c---------ccccccc-CCchhhhhhHHHHHHHHHHHHHHHHhhcccccccc-ccCCCCCccCCCCCccccc
Q 037851 95 -------K---------KCFKGLC-PNLKKRYQLSEKAAIKGKSIAEIKKEAADFAQISY-RTVPEEPWLSSGKGYEAFE 156 (1053)
Q Consensus 95 -------~---------~~~~~~~-~~~~~~~~~~~~i~~~~~~l~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 156 (1053)
. -|+.+.+ .....-+.+++++.++.+.++.+..++ .+..+.. ..++......|...... +
T Consensus 84 ~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~-~~~~~~~~~~~~~~~e~~~~~~~~~-V 161 (889)
T KOG4658|consen 84 ERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKG-VFEVVGESLDPREKVETRPIQSESD-V 161 (889)
T ss_pred HHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhcccc-ceecccccccchhhcccCCCCcccc-c
Confidence 0 0111111 122222334444444444444444332 2222221 11111122333344444 9
Q ss_pred chHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHhh-hcCCCCeEEEEEEcCCcCHHHHHHHHHHHhCCCCCC
Q 037851 157 SRMSTLKSLQNALLDPDVTITGVYGMGGLGKTTLVKEVARQVK-KDKHFDEVVFAEVSDTPDIKKVQGELADQLGMQFDE 235 (1053)
Q Consensus 157 gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~-~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~ 235 (1053)
|.+..++++.+.|.+++..+++|+||||+||||||+.++|+.. ++.+||.++||.||+.++..+++.+|++.++.....
T Consensus 162 G~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~ 241 (889)
T KOG4658|consen 162 GLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEE 241 (889)
T ss_pred cHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcc
Confidence 9999999999999977779999999999999999999999998 899999999999999999999999999999874433
Q ss_pred CCC--hhHHHHHHHHHHhcCCcEEEEEcCCCCccchhhhcCCCCCCCCCcEEEEEecChHHHHh-hC-CCcccccCCCHH
Q 037851 236 ESD--VPGRARKLYARLQKENKILIILDNIWEDLDLEKVGVPSGNDCRGCKVLLTARDRHVLES-IG-SKTLRIDVLNDE 311 (1053)
Q Consensus 236 ~~~--~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~~-~~-~~~~~l~~L~~~ 311 (1053)
..+ ....+..+.+.|. ++||+|||||||+..+|+.++.++|...+||||++|||+..|+.. ++ ...+++++|+++
T Consensus 242 ~~~~~~~~~~~~i~~~L~-~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~ 320 (889)
T KOG4658|consen 242 WEDKEEDELASKLLNLLE-GKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPE 320 (889)
T ss_pred cchhhHHHHHHHHHHHhc-cCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCcc
Confidence 332 2356677777774 999999999999999999999999999999999999999999998 77 789999999999
Q ss_pred HHHHHHHHHhCCC--CCCccchHHHHHHHHHhCCCchHHHHHHHHHhcCCCHHHHHHHHHHhcCCCCCchhhhHHHhhhh
Q 037851 312 EAWTLFKKMTGDC--AEKGELKSIATDVAKECGGLPIAIVTLAKALRNKTSVSTWKDALRQLKRPSHRNFEGVLAKTYSA 389 (1053)
Q Consensus 312 ~~~~lf~~~~~~~--~~~~~~~~~~~~i~~~~~GlPlai~~~~~~L~~~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~ 389 (1053)
|||.||++.++.. ...+.++++|++++++|+|+|||++++|+.|+.|++..+|+++.+.+.+....++++..+.++++
T Consensus 321 eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~i 400 (889)
T KOG4658|consen 321 EAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPI 400 (889)
T ss_pred ccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHh
Confidence 9999999999843 33455899999999999999999999999999999999999999999988777777788999999
Q ss_pred HHhhhcccChhhhHHHHHhcCCCCCCC--chhHHHHHHHHHhccccCccCHHHHHHHHHHHHHHHHhhcccccCC----C
Q 037851 390 IELSYKYLREEELKKLFLQCSLMGSPQ--ASTLNLLKYAIGLGIVKGVGTVEEARDKVNTLVDQLRDACLLLDGT----N 463 (1053)
Q Consensus 390 l~~sy~~L~~~~lk~cfl~~s~fp~~~--~~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~----~ 463 (1053)
|++||++||+ ++|.||+|||+|| +| |+++.|+.+|+||||+.+....+.+++.+++|+.+|++++|+.... .
T Consensus 401 LklSyd~L~~-~lK~CFLycalFP-ED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~ 478 (889)
T KOG4658|consen 401 LKLSYDNLPE-ELKSCFLYCALFP-EDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRK 478 (889)
T ss_pred hhccHhhhhH-HHHHHHHhhccCC-cccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccce
Confidence 9999999994 8999999999999 66 8889999999999999986667788999999999999999998763 3
Q ss_pred CeEEehHHHHHHHHHHhc-----ccceeeeeeCCc----CCCCCCCCCcceEEeeccCCCCCCCCCcccccCCCceeEEe
Q 037851 464 DCFSMHDVVRDVAISIAS-----RDYHVFSMRNEV----DPRQWPDKKCSRISLYDNNINSPLKIPDNIFIGTPKLKVLD 534 (1053)
Q Consensus 464 ~~~~mHdlv~~~a~~~~~-----~e~~~~~~~~~~----~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~Lr~L~ 534 (1053)
.+|+|||+|||+|.++++ +++++...+... ....| ...|++++.++.... ++.. ...+.|++|-
T Consensus 479 ~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~--~~~rr~s~~~~~~~~---~~~~--~~~~~L~tLl 551 (889)
T KOG4658|consen 479 ETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSW--NSVRRMSLMNNKIEH---IAGS--SENPKLRTLL 551 (889)
T ss_pred eEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccch--hheeEEEEeccchhh---ccCC--CCCCccceEE
Confidence 689999999999999999 666433222111 11223 237888888766543 3332 2455799999
Q ss_pred ecCcc--ccCCCc-ccccCccCcEEEcCCcc-cCC-ccccCCCCCCcEEEccCCCCcccchhhhccCCCCeeeccCcccc
Q 037851 535 FTRMR--LLSLPS-SIHLLTDLRTLCLDGCE-LED-IRVIGELKDLEILSLQGSKIEQLPREIGQLTQLKLLDLSNCSKL 609 (1053)
Q Consensus 535 l~~~~--~~~lp~-~i~~l~~Lr~L~L~~~~-~~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l 609 (1053)
+.+|. +..++. .|..++.||+|||++|. +.. |..|++|-|||||++++|.+..+|.++++|+.|.+|++..+..+
T Consensus 552 l~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l 631 (889)
T KOG4658|consen 552 LQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRL 631 (889)
T ss_pred EeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheecccccccc
Confidence 99986 566655 47789999999999986 555 89999999999999999999999999999999999999986666
Q ss_pred cccCcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCCeEEEEec
Q 037851 610 KVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLEINIL 666 (1053)
Q Consensus 610 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~ 666 (1053)
..+ ++.+..|.+|++|.+..... ......+.++.++.+|+.+.+...
T Consensus 632 ~~~-~~i~~~L~~Lr~L~l~~s~~---------~~~~~~l~el~~Le~L~~ls~~~~ 678 (889)
T KOG4658|consen 632 ESI-PGILLELQSLRVLRLPRSAL---------SNDKLLLKELENLEHLENLSITIS 678 (889)
T ss_pred ccc-cchhhhcccccEEEeecccc---------ccchhhHHhhhcccchhhheeecc
Confidence 655 67677799999999876542 123456777888888887777543
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=6e-64 Score=635.42 Aligned_cols=717 Identities=21% Similarity=0.292 Sum_probs=521.4
Q ss_pred CcccccchHHHHHHHHHHhc--CCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEE---cCC----------
Q 037851 151 GYEAFESRMSTLKSLQNALL--DPDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEV---SDT---------- 215 (1053)
Q Consensus 151 ~~~~~~gR~~~~~~l~~~l~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~---s~~---------- 215 (1053)
+.++++||+..++++..+|. .+++++|+||||||+||||||+++|+... .+|++.+|+.. +..
T Consensus 182 ~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~--~~F~g~vfv~~~~v~~~~~~~~~~~~~ 259 (1153)
T PLN03210 182 DFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLS--RQFQSSVFIDRAFISKSMEIYSSANPD 259 (1153)
T ss_pred ccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHh--hcCCeEEEeeccccccchhhccccccc
Confidence 45679999999999998885 45789999999999999999999999876 67988888742 111
Q ss_pred -cC-HHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCccchhhhcCCCCCCCCCcEEEEEecChH
Q 037851 216 -PD-IKKVQGELADQLGMQFDEESDVPGRARKLYARLQKENKILIILDNIWEDLDLEKVGVPSGNDCRGCKVLLTARDRH 293 (1053)
Q Consensus 216 -~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~iivTtR~~~ 293 (1053)
.+ ...++++++.++......... ....+++++. ++|+||||||||+..+|+.+.....+.++||+||||||++.
T Consensus 260 ~~~~~~~l~~~~l~~il~~~~~~~~---~~~~~~~~L~-~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~ 335 (1153)
T PLN03210 260 DYNMKLHLQRAFLSEILDKKDIKIY---HLGAMEERLK-HRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKH 335 (1153)
T ss_pred ccchhHHHHHHHHHHHhCCCCcccC---CHHHHHHHHh-CCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHH
Confidence 01 123444555544322211111 1244566664 89999999999999999998877777788999999999999
Q ss_pred HHHhhC-CCcccccCCCHHHHHHHHHHHhCCCC-CCccchHHHHHHHHHhCCCchHHHHHHHHHhcCCCHHHHHHHHHHh
Q 037851 294 VLESIG-SKTLRIDVLNDEEAWTLFKKMTGDCA-EKGELKSIATDVAKECGGLPIAIVTLAKALRNKTSVSTWKDALRQL 371 (1053)
Q Consensus 294 v~~~~~-~~~~~l~~L~~~~~~~lf~~~~~~~~-~~~~~~~~~~~i~~~~~GlPlai~~~~~~L~~~~~~~~w~~~l~~l 371 (1053)
++..++ .++|+++.+++++||+||+++||... ++.++++++++|+++|+|+|||++++|+.|+.+ +..+|+.+++++
T Consensus 336 vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~W~~~l~~L 414 (1153)
T PLN03210 336 FLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKEDWMDMLPRL 414 (1153)
T ss_pred HHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 998776 78999999999999999999998543 455688999999999999999999999999987 789999999998
Q ss_pred cCCCCCchhhhHHHhhhhHHhhhcccChhhhHHHHHhcCCCCCCCchhHHHHHHHHHhccccCccCHHHHHHHHHHHHHH
Q 037851 372 KRPSHRNFEGVLAKTYSAIELSYKYLREEELKKLFLQCSLMGSPQASTLNLLKYAIGLGIVKGVGTVEEARDKVNTLVDQ 451 (1053)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~cfl~~s~fp~~~~~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~~~~ 451 (1053)
.... ...+.++|++||++|+++..|.||+++|+|+ .+...+. +..|.+.+.... ...++.
T Consensus 415 ~~~~-------~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff-~~~~~~~-v~~~l~~~~~~~-----------~~~l~~ 474 (1153)
T PLN03210 415 RNGL-------DGKIEKTLRVSYDGLNNKKDKAIFRHIACLF-NGEKVND-IKLLLANSDLDV-----------NIGLKN 474 (1153)
T ss_pred HhCc-------cHHHHHHHHHhhhccCccchhhhhheehhhc-CCCCHHH-HHHHHHhcCCCc-----------hhChHH
Confidence 7543 3478999999999998755799999999998 6655443 556666554321 123788
Q ss_pred HHhhcccccCCCCeEEehHHHHHHHHHHhcccce-------eeeeeCC--cCCCCCCCCCcceEEeeccCCCCCCCCCcc
Q 037851 452 LRDACLLLDGTNDCFSMHDVVRDVAISIASRDYH-------VFSMRNE--VDPRQWPDKKCSRISLYDNNINSPLKIPDN 522 (1053)
Q Consensus 452 L~~~~l~~~~~~~~~~mHdlv~~~a~~~~~~e~~-------~~~~~~~--~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~ 522 (1053)
|+++||++.. .+.++|||++|+||++++.++.. .+...+- +-........++.+++...... ...+..+
T Consensus 475 L~~ksLi~~~-~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~-~~~i~~~ 552 (1153)
T PLN03210 475 LVDKSLIHVR-EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEID-ELHIHEN 552 (1153)
T ss_pred HHhcCCEEEc-CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccc-eeeecHH
Confidence 9999999764 46799999999999999876531 1100000 0000011123555665533332 2346777
Q ss_pred cccCCCceeEEeecCcccc-------CCCcccccCc-cCcEEEcCCcccCCccccCCCCCCcEEEccCCCCcccchhhhc
Q 037851 523 IFIGTPKLKVLDFTRMRLL-------SLPSSIHLLT-DLRTLCLDGCELEDIRVIGELKDLEILSLQGSKIEQLPREIGQ 594 (1053)
Q Consensus 523 ~~~~~~~Lr~L~l~~~~~~-------~lp~~i~~l~-~Lr~L~L~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~ 594 (1053)
.|.+|++|+.|.+..+... .+|..+..++ +||+|.+.++.+..++....+.+|++|+++++.+..+|.++..
T Consensus 553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~ 632 (1153)
T PLN03210 553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHS 632 (1153)
T ss_pred HHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCcccccccccccc
Confidence 8999999999999765421 4677777764 5999999999988844434689999999999999999999999
Q ss_pred cCCCCeeeccCcccccccCcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCCeEEEEecc-CCCCCC
Q 037851 595 LTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLEINILD-AGILPS 673 (1053)
Q Consensus 595 L~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~-~~~~~~ 673 (1053)
+++|++|++++|+.+..+|. ++.+++|++|++.+|.. ....+..++++++|+.|+++++. ...+|.
T Consensus 633 l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~-----------L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~ 699 (1153)
T PLN03210 633 LTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSS-----------LVELPSSIQYLNKLEDLDMSRCENLEILPT 699 (1153)
T ss_pred CCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCC-----------ccccchhhhccCCCCEEeCCCCCCcCccCC
Confidence 99999999999888888863 78999999999999864 23455677888999999887653 222222
Q ss_pred ccccccCceEEEEEcccCCCCCcccccceeeeccCCccccccccccCccceeeccccCCcccccccccccccccccEEEe
Q 037851 674 GFFSRKLKRYRIVVGFQWAPFDKYKTRRTLKLKLNSRICLEEWRGMKNVEYLRLDELPGLTNVLHDLDGEGFAELKHLNV 753 (1053)
Q Consensus 674 ~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~l~~L~~L~l 753 (1053)
.. .+++|+.|++++|..+... +. ..++|+.|++
T Consensus 700 ~i------------------------------------------~l~sL~~L~Lsgc~~L~~~-p~----~~~nL~~L~L 732 (1153)
T PLN03210 700 GI------------------------------------------NLKSLYRLNLSGCSRLKSF-PD----ISTNISWLDL 732 (1153)
T ss_pred cC------------------------------------------CCCCCCEEeCCCCCCcccc-cc----ccCCcCeeec
Confidence 11 3566777777776554332 11 2356777777
Q ss_pred ecCCCceeecCCcccccCcCCccceeecccccccccccc----cccCccccCCccEEeEccCCCccccCCchhhhccCCc
Q 037851 754 KNNSNFLCIVDPLQVRCGAFPMLESLVLQNLINLERICH----GQLRAESFCNLKTIKVGSCHKLKNLFSFSIAKFLPQL 829 (1053)
Q Consensus 754 ~~~~~l~~i~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~----~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L 829 (1053)
.++. +..++. ...+++|..|.+.++....-+.. .......+++|+.|++++|+.+..+|. .+.++++|
T Consensus 733 ~~n~-i~~lP~-----~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~--si~~L~~L 804 (1153)
T PLN03210 733 DETA-IEEFPS-----NLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPS--SIQNLHKL 804 (1153)
T ss_pred CCCc-cccccc-----cccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccCh--hhhCCCCC
Confidence 7664 332221 12467777777766442211100 001112357899999999998888865 47889999
Q ss_pred cEEEecccchhhhHhhcCcccccccccccccceEecCCCcccccccccccccccccchhhhhHhhhccccCCCCcccccc
Q 037851 830 KTIEVTECKIVEEIFVSSNEEAIGEIALAQVRSLILRTLPLLASFSAFVKTTSTVEAKHNEIILENESQLHTPSSLFNVK 909 (1053)
Q Consensus 830 ~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~si~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 909 (1053)
+.|++++|+.+..++... .+++|++|++++|..+..+|..
T Consensus 805 ~~L~Ls~C~~L~~LP~~~--------~L~sL~~L~Ls~c~~L~~~p~~-------------------------------- 844 (1153)
T PLN03210 805 EHLEIENCINLETLPTGI--------NLESLESLDLSGCSRLRTFPDI-------------------------------- 844 (1153)
T ss_pred CEEECCCCCCcCeeCCCC--------CccccCEEECCCCCcccccccc--------------------------------
Confidence 999999999888776321 4889999999999988876532
Q ss_pred ccccccceEeecccccceeccCCccccccccCCcccEEEEecCccccccccchhHhhhccCcEEEEecccccceeecccC
Q 037851 910 LVLPNLEVLEVRDLNVAKIWHNQFSAAMSCNVQNLTRLVVLDCHKLRYVFSYSTAKRLGQLKHLVISRCPLLEEIVGKEG 989 (1053)
Q Consensus 910 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~l~~l~sL~~L~i~~c~~l~~i~~~~~ 989 (1053)
.++|+.|+++++.+..++. ....+++|+.|++.+|++|+.+++ ....+++|+.|++++|+.++++.....
T Consensus 845 --~~nL~~L~Ls~n~i~~iP~------si~~l~~L~~L~L~~C~~L~~l~~--~~~~L~~L~~L~l~~C~~L~~~~l~~~ 914 (1153)
T PLN03210 845 --STNISDLNLSRTGIEEVPW------WIEKFSNLSFLDMNGCNNLQRVSL--NISKLKHLETVDFSDCGALTEASWNGS 914 (1153)
T ss_pred --ccccCEeECCCCCCccChH------HHhcCCCCCEEECCCCCCcCccCc--ccccccCCCeeecCCCcccccccCCCC
Confidence 5689999999998877553 245789999999999999999854 356789999999999999876532110
Q ss_pred c-----cccCCcccccccCccccccccccc
Q 037851 990 G-----VEADPSFVFPQLTILKLSSLPELR 1014 (1053)
Q Consensus 990 ~-----~~~~~~~~~p~L~~L~l~~c~~L~ 1014 (1053)
. ........+|+...+...+|.+|.
T Consensus 915 ~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~ 944 (1153)
T PLN03210 915 PSEVAMATDNIHSKLPSTVCINFINCFNLD 944 (1153)
T ss_pred chhhhhhcccccccCCchhccccccccCCC
Confidence 0 000011234555566677776664
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1.4e-41 Score=370.81 Aligned_cols=274 Identities=32% Similarity=0.605 Sum_probs=222.2
Q ss_pred hHHHHHHHHHHhcC--CCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhCCCCC-
Q 037851 158 RMSTLKSLQNALLD--PDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLGMQFD- 234 (1053)
Q Consensus 158 R~~~~~~l~~~l~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~- 234 (1053)
|+.++++|.++|.+ ++.++|+|+||||+||||||++++++...+.+|+.++|+++++..+...++..|+++++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 78999999999986 789999999999999999999999997778999999999999999999999999999998743
Q ss_pred --CCCChhHHHHHHHHHHhcCCcEEEEEcCCCCccchhhhcCCCCCCCCCcEEEEEecChHHHHhhC--CCcccccCCCH
Q 037851 235 --EESDVPGRARKLYARLQKENKILIILDNIWEDLDLEKVGVPSGNDCRGCKVLLTARDRHVLESIG--SKTLRIDVLND 310 (1053)
Q Consensus 235 --~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~~~~--~~~~~l~~L~~ 310 (1053)
...+.......+.+.+. ++++||||||||+...|+.+...++....|++||||||+..++..++ ...|++++|+.
T Consensus 81 ~~~~~~~~~~~~~l~~~L~-~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~ 159 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRELLK-DKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSE 159 (287)
T ss_dssp SSCCSSHHHHHHHHHHHHC-CTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--H
T ss_pred cccccccccccccchhhhc-cccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 23445566777777774 78999999999999999988888777778999999999999887655 57899999999
Q ss_pred HHHHHHHHHHhCCCC--CCccchHHHHHHHHHhCCCchHHHHHHHHHhcCCCHHHHHHHHHHhcCCCCCchhhhHHHhhh
Q 037851 311 EEAWTLFKKMTGDCA--EKGELKSIATDVAKECGGLPIAIVTLAKALRNKTSVSTWKDALRQLKRPSHRNFEGVLAKTYS 388 (1053)
Q Consensus 311 ~~~~~lf~~~~~~~~--~~~~~~~~~~~i~~~~~GlPlai~~~~~~L~~~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~ 388 (1053)
+||++||.+.++... ..+..++.+++|+++|+|+|||++++|++|+.+.+..+|+.+++++...... ..+....++.
T Consensus 160 ~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~-~~~~~~~~~~ 238 (287)
T PF00931_consen 160 EEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRE-SRDYDRSVFS 238 (287)
T ss_dssp HHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTC-SSGSCHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccc
Confidence 999999999998543 4456678899999999999999999999997665778999999887665432 1124678999
Q ss_pred hHHhhhcccChhhhHHHHHhcCCCCCC-CchhHHHHHHHHHhccccC
Q 037851 389 AIELSYKYLREEELKKLFLQCSLMGSP-QASTLNLLKYAIGLGIVKG 434 (1053)
Q Consensus 389 ~l~~sy~~L~~~~lk~cfl~~s~fp~~-~~~~~~li~~w~a~g~~~~ 434 (1053)
++.+||+.||+ ++|+||+|||+||.. .|+++.++++|+++||++.
T Consensus 239 ~l~~s~~~L~~-~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 239 ALELSYDSLPD-ELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHHHHHHSSHT-CCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred cceechhcCCc-cHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 99999999998 799999999999933 3889999999999999975
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.96 E-value=8.1e-28 Score=307.47 Aligned_cols=487 Identities=19% Similarity=0.167 Sum_probs=289.9
Q ss_pred cceEEeeccCCCCCCCCCcccccCCCceeEEeecCcccc-CCCcccccCccCcEEEcCCcccCC--ccccCCCCCCcEEE
Q 037851 503 CSRISLYDNNINSPLKIPDNIFIGTPKLKVLDFTRMRLL-SLPSSIHLLTDLRTLCLDGCELED--IRVIGELKDLEILS 579 (1053)
Q Consensus 503 ~~~l~l~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~-~lp~~i~~l~~Lr~L~L~~~~~~~--~~~i~~l~~L~~L~ 579 (1053)
.+.+.+..+...+ .+|..+|.++++|++|++++|.+. .+|. +.+.+|++|++++|.+.. |..++.+++|++|+
T Consensus 95 L~~L~Ls~n~~~~--~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~ 170 (968)
T PLN00113 95 IQTINLSNNQLSG--PIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLD 170 (968)
T ss_pred CCEEECCCCccCC--cCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEE
Confidence 5666666655443 377777778888888888888876 3443 567888888888888764 56788888888888
Q ss_pred ccCCCCc-ccchhhhccCCCCeeeccCcccccccCcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCC
Q 037851 580 LQGSKIE-QLPREIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRL 658 (1053)
Q Consensus 580 l~~~~l~-~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L 658 (1053)
+++|.+. .+|..++++++|++|++++|. +....|..++++++|++|++++|.+ ....+..++++++|
T Consensus 171 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~n~l-----------~~~~p~~l~~l~~L 238 (968)
T PLN00113 171 LGGNVLVGKIPNSLTNLTSLEFLTLASNQ-LVGQIPRELGQMKSLKWIYLGYNNL-----------SGEIPYEIGGLTSL 238 (968)
T ss_pred CccCcccccCChhhhhCcCCCeeeccCCC-CcCcCChHHcCcCCccEEECcCCcc-----------CCcCChhHhcCCCC
Confidence 8888775 778888888888888888854 4443355688888888888888876 23455667778888
Q ss_pred CeEEEEeccCC-CCCCcccc-ccCceEEEEEccc----CCCCCcccccceeeeccCCcc-cccccc-ccCccceeecccc
Q 037851 659 TSLEINILDAG-ILPSGFFS-RKLKRYRIVVGFQ----WAPFDKYKTRRTLKLKLNSRI-CLEEWR-GMKNVEYLRLDEL 730 (1053)
Q Consensus 659 ~~L~i~~~~~~-~~~~~~~~-~~L~~l~l~~~~~----~~~~~~~~~l~~l~l~~~~~~-~~~~~~-~l~~L~~L~L~~~ 730 (1053)
+.|+++++... .+|..+.. .+|+.|.+..+.. .........++.|++..+... .+|.+. .+++|+.|++.++
T Consensus 239 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n 318 (968)
T PLN00113 239 NHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSN 318 (968)
T ss_pred CEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCC
Confidence 88888776543 34443322 6677776644321 112234556777777665433 244443 6778888888776
Q ss_pred CCcccccccccccccccccEEEeecCCCceeecCCcccccCcCCccceeecccccccccccccccCccccCCccEEeEcc
Q 037851 731 PGLTNVLHDLDGEGFAELKHLNVKNNSNFLCIVDPLQVRCGAFPMLESLVLQNLINLERICHGQLRAESFCNLKTIKVGS 810 (1053)
Q Consensus 731 ~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L~i~~ 810 (1053)
.........+ ..+++|+.|++.+|... +......+.+++|+.|+++++.-...++. ....+++|+.|++.+
T Consensus 319 ~~~~~~~~~~--~~l~~L~~L~L~~n~l~----~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~---~~~~~~~L~~L~l~~ 389 (968)
T PLN00113 319 NFTGKIPVAL--TSLPRLQVLQLWSNKFS----GEIPKNLGKHNNLTVLDLSTNNLTGEIPE---GLCSSGNLFKLILFS 389 (968)
T ss_pred ccCCcCChhH--hcCCCCCEEECcCCCCc----CcCChHHhCCCCCcEEECCCCeeEeeCCh---hHhCcCCCCEEECcC
Confidence 4433222222 46778888888777521 12222244567777777776432222211 112345666666666
Q ss_pred CCCccccCCchhhhccCCccEEEecccchhhhHhhcCcccccccccccccceEecCCCcccccccccccccccccchhhh
Q 037851 811 CHKLKNLFSFSIAKFLPQLKTIEVTECKIVEEIFVSSNEEAIGEIALAQVRSLILRTLPLLASFSAFVKTTSTVEAKHNE 890 (1053)
Q Consensus 811 c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~si~~~~~~~~~l~~~~~~ 890 (1053)
|.-...+|. .+..+++|+.|++.+|......+.. ...+++|+.|+++++.-...++........++.+.
T Consensus 390 n~l~~~~p~--~~~~~~~L~~L~L~~n~l~~~~p~~-------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~-- 458 (968)
T PLN00113 390 NSLEGEIPK--SLGACRSLRRVRLQDNSFSGELPSE-------FTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLS-- 458 (968)
T ss_pred CEecccCCH--HHhCCCCCCEEECcCCEeeeECChh-------HhcCCCCCEEECcCCcccCccChhhccCCCCcEEE--
Confidence 542222221 3455666666666666433222211 11245555555555433222222111111111110
Q ss_pred hHhhhccccCCCCccccccccccccceEeecccccceeccCCccccccccCCcccEEEEecCccccccccchhHhhhccC
Q 037851 891 IILENESQLHTPSSLFNVKLVLPNLEVLEVRDLNVAKIWHNQFSAAMSCNVQNLTRLVVLDCHKLRYVFSYSTAKRLGQL 970 (1053)
Q Consensus 891 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~l~~l~sL 970 (1053)
...+...... ......++|++|++++|++...... .+..+++|+.|++++| ++....| ..+.++++|
T Consensus 459 -L~~n~~~~~~-----p~~~~~~~L~~L~ls~n~l~~~~~~-----~~~~l~~L~~L~Ls~N-~l~~~~p-~~~~~l~~L 525 (968)
T PLN00113 459 -LARNKFFGGL-----PDSFGSKRLENLDLSRNQFSGAVPR-----KLGSLSELMQLKLSEN-KLSGEIP-DELSSCKKL 525 (968)
T ss_pred -CcCceeeeec-----CcccccccceEEECcCCccCCccCh-----hhhhhhccCEEECcCC-cceeeCC-hHHcCccCC
Confidence 0000000000 0011146788888888876653322 2346778888888885 4444333 356778888
Q ss_pred cEEEEecccccceeecccCccccCCcccccccCccccccccccccccCCCCccCCCCcceEEEecCCCCccccCCCCC
Q 037851 971 KHLVISRCPLLEEIVGKEGGVEADPSFVFPQLTILKLSSLPELRAFYPGIHTLECPILTKLEVSFCHKLESFSSEPPS 1048 (1053)
Q Consensus 971 ~~L~i~~c~~l~~i~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~l~~~~~~~~~~sL~~L~I~~Cp~L~~l~~~~~~ 1048 (1053)
+.|+|++|.....+ +.....+++|++|++++|.-...+|..+.. +++|+.|++++|+-...+|..+.+
T Consensus 526 ~~L~Ls~N~l~~~~--------p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~--l~~L~~l~ls~N~l~~~~p~~~~~ 593 (968)
T PLN00113 526 VSLDLSHNQLSGQI--------PASFSEMPVLSQLDLSQNQLSGEIPKNLGN--VESLVQVNISHNHLHGSLPSTGAF 593 (968)
T ss_pred CEEECCCCcccccC--------ChhHhCcccCCEEECCCCcccccCChhHhc--CcccCEEeccCCcceeeCCCcchh
Confidence 88998888743222 122345788889999888766677765543 588999999988877777765543
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.95 E-value=8e-27 Score=298.34 Aligned_cols=485 Identities=20% Similarity=0.182 Sum_probs=327.7
Q ss_pred cceEEeeccCCCCCCCCCcccccCCCceeEEeecCcccc-CCCcccc-cCccCcEEEcCCcccCCccccCCCCCCcEEEc
Q 037851 503 CSRISLYDNNINSPLKIPDNIFIGTPKLKVLDFTRMRLL-SLPSSIH-LLTDLRTLCLDGCELEDIRVIGELKDLEILSL 580 (1053)
Q Consensus 503 ~~~l~l~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~-~lp~~i~-~l~~Lr~L~L~~~~~~~~~~i~~l~~L~~L~l 580 (1053)
++.+.+..+...+. ++ ..|..+++|++|++++|.+. .+|..+. .+.+|++|+|++|.+......+.+++|++|++
T Consensus 71 v~~L~L~~~~i~~~--~~-~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~L 147 (968)
T PLN00113 71 VVSIDLSGKNISGK--IS-SAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDL 147 (968)
T ss_pred EEEEEecCCCcccc--CC-hHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEEC
Confidence 56677776655442 33 44678999999999999987 6888755 99999999999999877434477999999999
Q ss_pred cCCCCc-ccchhhhccCCCCeeeccCcccccccCcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCC
Q 037851 581 QGSKIE-QLPREIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLT 659 (1053)
Q Consensus 581 ~~~~l~-~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~ 659 (1053)
++|.+. .+|..++++++|++|++++| .+....|..++++++|++|++++|.+ ....+..++++++|+
T Consensus 148 s~n~~~~~~p~~~~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~L~~n~l-----------~~~~p~~l~~l~~L~ 215 (968)
T PLN00113 148 SNNMLSGEIPNDIGSFSSLKVLDLGGN-VLVGKIPNSLTNLTSLEFLTLASNQL-----------VGQIPRELGQMKSLK 215 (968)
T ss_pred cCCcccccCChHHhcCCCCCEEECccC-cccccCChhhhhCcCCCeeeccCCCC-----------cCcCChHHcCcCCcc
Confidence 999987 78999999999999999996 44444456689999999999999986 345667889999999
Q ss_pred eEEEEeccCC-CCCCccc-cccCceEEEEEccc----CCCCCcccccceeeeccCCcc-cccccc-ccCccceeeccccC
Q 037851 660 SLEINILDAG-ILPSGFF-SRKLKRYRIVVGFQ----WAPFDKYKTRRTLKLKLNSRI-CLEEWR-GMKNVEYLRLDELP 731 (1053)
Q Consensus 660 ~L~i~~~~~~-~~~~~~~-~~~L~~l~l~~~~~----~~~~~~~~~l~~l~l~~~~~~-~~~~~~-~l~~L~~L~L~~~~ 731 (1053)
.|+++.+... .+|..+. ..+|+.|.+..+.. ...+.....++.|.+..+... ..|... .+++|++|+++++.
T Consensus 216 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 295 (968)
T PLN00113 216 WIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNS 295 (968)
T ss_pred EEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCe
Confidence 9999887654 4554443 27788887754421 122345567788888766433 234333 78889999988765
Q ss_pred CcccccccccccccccccEEEeecCCCceeecCCcccccCcCCccceeecccccccccccccccCccccCCccEEeEccC
Q 037851 732 GLTNVLHDLDGEGFAELKHLNVKNNSNFLCIVDPLQVRCGAFPMLESLVLQNLINLERICHGQLRAESFCNLKTIKVGSC 811 (1053)
Q Consensus 732 ~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L~i~~c 811 (1053)
........+ ..+++|+.|++.+|... +........+++|+.|.+.++.-...++ ...+.+++|+.|++++|
T Consensus 296 l~~~~p~~~--~~l~~L~~L~l~~n~~~----~~~~~~~~~l~~L~~L~L~~n~l~~~~p---~~l~~~~~L~~L~Ls~n 366 (968)
T PLN00113 296 LSGEIPELV--IQLQNLEILHLFSNNFT----GKIPVALTSLPRLQVLQLWSNKFSGEIP---KNLGKHNNLTVLDLSTN 366 (968)
T ss_pred eccCCChhH--cCCCCCcEEECCCCccC----CcCChhHhcCCCCCEEECcCCCCcCcCC---hHHhCCCCCcEEECCCC
Confidence 332222222 56788999998887522 2222224568889999998764322222 12356788999999887
Q ss_pred CCccccCCchhhhccCCccEEEecccchhhhHhhcCcccccccccccccceEecCCCcccccccccccccccccchhhhh
Q 037851 812 HKLKNLFSFSIAKFLPQLKTIEVTECKIVEEIFVSSNEEAIGEIALAQVRSLILRTLPLLASFSAFVKTTSTVEAKHNEI 891 (1053)
Q Consensus 812 ~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~si~~~~~~~~~l~~~~~~~ 891 (1053)
.-...+|. .+..+++|+.|++++|+....++.. ...+++|+.|++.+|.-...+|........+..+.
T Consensus 367 ~l~~~~p~--~~~~~~~L~~L~l~~n~l~~~~p~~-------~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~--- 434 (968)
T PLN00113 367 NLTGEIPE--GLCSSGNLFKLILFSNSLEGEIPKS-------LGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLD--- 434 (968)
T ss_pred eeEeeCCh--hHhCcCCCCEEECcCCEecccCCHH-------HhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEE---
Confidence 53223332 4566788999999888654444321 12478999999999875555544322211111111
Q ss_pred HhhhccccCCCCccccccccccccceEeecccccceeccCCccccccccCCcccEEEEecCccccccccchhHhhhccCc
Q 037851 892 ILENESQLHTPSSLFNVKLVLPNLEVLEVRDLNVAKIWHNQFSAAMSCNVQNLTRLVVLDCHKLRYVFSYSTAKRLGQLK 971 (1053)
Q Consensus 892 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~l~~l~sL~ 971 (1053)
...+......+. ....+++|+.|++++|++....+..+ ..++|+.|++++|. +....+ ..+.++++|+
T Consensus 435 Ls~N~l~~~~~~----~~~~l~~L~~L~L~~n~~~~~~p~~~------~~~~L~~L~ls~n~-l~~~~~-~~~~~l~~L~ 502 (968)
T PLN00113 435 ISNNNLQGRINS----RKWDMPSLQMLSLARNKFFGGLPDSF------GSKRLENLDLSRNQ-FSGAVP-RKLGSLSELM 502 (968)
T ss_pred CcCCcccCccCh----hhccCCCCcEEECcCceeeeecCccc------ccccceEEECcCCc-cCCccC-hhhhhhhccC
Confidence 111111111111 11237889999999987665332211 34789999999864 444333 4577899999
Q ss_pred EEEEecccccceeecccCccccCCcccccccCccccccccccccccCCCCccCCCCcceEEEecCCCCccccCC
Q 037851 972 HLVISRCPLLEEIVGKEGGVEADPSFVFPQLTILKLSSLPELRAFYPGIHTLECPILTKLEVSFCHKLESFSSE 1045 (1053)
Q Consensus 972 ~L~i~~c~~l~~i~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~l~~~~~~~~~~sL~~L~I~~Cp~L~~l~~~ 1045 (1053)
.|++++|.....++ .....+++|++|+|++|.-...+|.... .+++|++|++++|.-...+|..
T Consensus 503 ~L~Ls~N~l~~~~p--------~~~~~l~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~ 566 (968)
T PLN00113 503 QLKLSENKLSGEIP--------DELSSCKKLVSLDLSHNQLSGQIPASFS--EMPVLSQLDLSQNQLSGEIPKN 566 (968)
T ss_pred EEECcCCcceeeCC--------hHHcCccCCCEEECCCCcccccCChhHh--CcccCCEEECCCCcccccCChh
Confidence 99999997433332 1234578999999999876556665433 4699999999999866566643
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.84 E-value=1.3e-21 Score=209.31 Aligned_cols=112 Identities=15% Similarity=0.161 Sum_probs=62.2
Q ss_pred ccccceEeecccccceeccCCccccccccCCcccEEEEecCccccccccchhHhhhccCcEEEEecccccceeecccCcc
Q 037851 912 LPNLEVLEVRDLNVAKIWHNQFSAAMSCNVQNLTRLVVLDCHKLRYVFSYSTAKRLGQLKHLVISRCPLLEEIVGKEGGV 991 (1053)
Q Consensus 912 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~l~~l~sL~~L~i~~c~~l~~i~~~~~~~ 991 (1053)
+++|+.|++++++++.+....| ..+..|+.|+++. +.+.++ ....+..+.+|++||++++. +...++. .
T Consensus 316 tqkL~~LdLs~N~i~~l~~~sf-----~~L~~Le~LnLs~-Nsi~~l-~e~af~~lssL~~LdLr~N~-ls~~IED-a-- 384 (873)
T KOG4194|consen 316 TQKLKELDLSSNRITRLDEGSF-----RVLSQLEELNLSH-NSIDHL-AEGAFVGLSSLHKLDLRSNE-LSWCIED-A-- 384 (873)
T ss_pred cccceeEeccccccccCChhHH-----HHHHHhhhhcccc-cchHHH-HhhHHHHhhhhhhhcCcCCe-EEEEEec-c--
Confidence 5666666666666665544332 3455666666665 555554 34456666677777776664 3333221 1
Q ss_pred ccCCcccccccCccccccccccccccCCCCccCCCCcceEEEecCC
Q 037851 992 EADPSFVFPQLTILKLSSLPELRAFYPGIHTLECPILTKLEVSFCH 1037 (1053)
Q Consensus 992 ~~~~~~~~p~L~~L~l~~c~~L~~l~~~~~~~~~~sL~~L~I~~Cp 1037 (1053)
..+..-+|+|+.|.+.++ +|++++..-+ ..+++|++|++.+.+
T Consensus 385 -a~~f~gl~~LrkL~l~gN-qlk~I~krAf-sgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 385 -AVAFNGLPSLRKLRLTGN-QLKSIPKRAF-SGLEALEHLDLGDNA 427 (873)
T ss_pred -hhhhccchhhhheeecCc-eeeecchhhh-ccCcccceecCCCCc
Confidence 112233666777777663 5666665432 245667777666554
No 7
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.83 E-value=9.7e-19 Score=223.31 Aligned_cols=300 Identities=22% Similarity=0.302 Sum_probs=190.4
Q ss_pred CCcccccCCCceeEEeecCccccCCCcccccCccCcEEEcCCcccCC-ccccCCCCCCcEEEccCC-CCcccchhhhccC
Q 037851 519 IPDNIFIGTPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDGCELED-IRVIGELKDLEILSLQGS-KIEQLPREIGQLT 596 (1053)
Q Consensus 519 ~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~-~~~i~~l~~L~~L~l~~~-~l~~lp~~i~~L~ 596 (1053)
+|.++..-...||.|.+.++.+..+|..+ ...+|+.|++.+|.+.. +..+..+++|++|+|+++ .+..+| .++.++
T Consensus 580 lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~ 657 (1153)
T PLN03210 580 LPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMAT 657 (1153)
T ss_pred cCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC-ccccCC
Confidence 55554322356888888888888888876 56888888888888777 567788888888888876 466777 477888
Q ss_pred CCCeeeccCcccccccCcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCCeEEEEeccC-CCCCCcc
Q 037851 597 QLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLEINILDA-GILPSGF 675 (1053)
Q Consensus 597 ~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~-~~~~~~~ 675 (1053)
+|++|++++|..+..+|. .++++++|+.|++++|... ...+... ++++|+.|+++++.. ..+|..
T Consensus 658 ~Le~L~L~~c~~L~~lp~-si~~L~~L~~L~L~~c~~L-----------~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~- 723 (1153)
T PLN03210 658 NLETLKLSDCSSLVELPS-SIQYLNKLEDLDMSRCENL-----------EILPTGI-NLKSLYRLNLSGCSRLKSFPDI- 723 (1153)
T ss_pred cccEEEecCCCCccccch-hhhccCCCCEEeCCCCCCc-----------CccCCcC-CCCCCCEEeCCCCCCccccccc-
Confidence 888888888888877754 4788888888888877531 1111112 567788887776532 112211
Q ss_pred ccccCceEEEEEcccCCCCCcccccceeeeccCCccccccccccCccceeeccccCCcc-----cccccccccccccccE
Q 037851 676 FSRKLKRYRIVVGFQWAPFDKYKTRRTLKLKLNSRICLEEWRGMKNVEYLRLDELPGLT-----NVLHDLDGEGFAELKH 750 (1053)
Q Consensus 676 ~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~-----~~~~~l~~~~l~~L~~ 750 (1053)
..+++.|.+..+....+|....+++|.+|.+.++.... ..+........++|+.
T Consensus 724 ---------------------~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~ 782 (1153)
T PLN03210 724 ---------------------STNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTR 782 (1153)
T ss_pred ---------------------cCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchh
Confidence 12333444444443444544456677777666543211 0011111123467788
Q ss_pred EEeecCCCceeecCCcccccCcCCccceeecccccccccccccccCccccCCccEEeEccCCCccccCCchhhhccCCcc
Q 037851 751 LNVKNNSNFLCIVDPLQVRCGAFPMLESLVLQNLINLERICHGQLRAESFCNLKTIKVGSCHKLKNLFSFSIAKFLPQLK 830 (1053)
Q Consensus 751 L~l~~~~~l~~i~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~ 830 (1053)
|++++|+.+..++. ..+.+++|+.|++.+|.+++.++... .+++|+.|++++|.++..+|. ..++|+
T Consensus 783 L~Ls~n~~l~~lP~----si~~L~~L~~L~Ls~C~~L~~LP~~~----~L~sL~~L~Ls~c~~L~~~p~-----~~~nL~ 849 (1153)
T PLN03210 783 LFLSDIPSLVELPS----SIQNLHKLEHLEIENCINLETLPTGI----NLESLESLDLSGCSRLRTFPD-----ISTNIS 849 (1153)
T ss_pred eeCCCCCCccccCh----hhhCCCCCCEEECCCCCCcCeeCCCC----CccccCEEECCCCCccccccc-----cccccC
Confidence 88877765444432 24567778888888877777664322 467788888888877776643 246777
Q ss_pred EEEecccchhhhHhhcCcccccccccccccceEecCCCcccccccc
Q 037851 831 TIEVTECKIVEEIFVSSNEEAIGEIALAQVRSLILRTLPLLASFSA 876 (1053)
Q Consensus 831 ~L~l~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~si~~ 876 (1053)
.|+++++ .+..+|.. ...+++|+.|++.+|+++++++.
T Consensus 850 ~L~Ls~n-~i~~iP~s-------i~~l~~L~~L~L~~C~~L~~l~~ 887 (1153)
T PLN03210 850 DLNLSRT-GIEEVPWW-------IEKFSNLSFLDMNGCNNLQRVSL 887 (1153)
T ss_pred EeECCCC-CCccChHH-------HhcCCCCCEEECCCCCCcCccCc
Confidence 8887775 34444422 12377788888888888777654
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.82 E-value=1.4e-22 Score=217.40 Aligned_cols=113 Identities=24% Similarity=0.212 Sum_probs=82.2
Q ss_pred ccccceEeecccccceeccCCccccccccCCcccEEEEecCccccccccchhHhhhccCcEEEEecccccceeecccCcc
Q 037851 912 LPNLEVLEVRDLNVAKIWHNQFSAAMSCNVQNLTRLVVLDCHKLRYVFSYSTAKRLGQLKHLVISRCPLLEEIVGKEGGV 991 (1053)
Q Consensus 912 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~l~~l~sL~~L~i~~c~~l~~i~~~~~~~ 991 (1053)
..+|++|+++.+.++.++.. .+.++.|+.|...+ ++|+.-..+++++.+..|+.+...++. ++-++
T Consensus 267 W~~lEtLNlSrNQLt~LP~a------vcKL~kL~kLy~n~-NkL~FeGiPSGIGKL~~Levf~aanN~-LElVP------ 332 (1255)
T KOG0444|consen 267 WENLETLNLSRNQLTVLPDA------VCKLTKLTKLYANN-NKLTFEGIPSGIGKLIQLEVFHAANNK-LELVP------ 332 (1255)
T ss_pred HhhhhhhccccchhccchHH------HhhhHHHHHHHhcc-CcccccCCccchhhhhhhHHHHhhccc-cccCc------
Confidence 56788888888877766532 34677788887777 666666666788888888888888774 44332
Q ss_pred ccCCcccccccCccccccccccccccCCCCccCCCCcceEEEecCCCCcccc
Q 037851 992 EADPSFVFPQLTILKLSSLPELRAFYPGIHTLECPILTKLEVSFCHKLESFS 1043 (1053)
Q Consensus 992 ~~~~~~~~p~L~~L~l~~c~~L~~l~~~~~~~~~~sL~~L~I~~Cp~L~~l~ 1043 (1053)
.....|++|+.|.| +|+.|..+|.+.+. +|-|+.|+++..|+|..=|
T Consensus 333 --EglcRC~kL~kL~L-~~NrLiTLPeaIHl--L~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 333 --EGLCRCVKLQKLKL-DHNRLITLPEAIHL--LPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred --hhhhhhHHHHHhcc-cccceeechhhhhh--cCCcceeeccCCcCccCCC
Confidence 23456888888888 56778888887654 4888999999889887433
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.80 E-value=9.4e-21 Score=202.73 Aligned_cols=358 Identities=22% Similarity=0.241 Sum_probs=204.4
Q ss_pred eeEEeecCccccCC-CcccccCccCcEEEcCCcccCCccc-cCCCCCCcEEEccCCCCcccc-hhhhccCCCCeeeccCc
Q 037851 530 LKVLDFTRMRLLSL-PSSIHLLTDLRTLCLDGCELEDIRV-IGELKDLEILSLQGSKIEQLP-REIGQLTQLKLLDLSNC 606 (1053)
Q Consensus 530 Lr~L~l~~~~~~~l-p~~i~~l~~Lr~L~L~~~~~~~~~~-i~~l~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~ 606 (1053)
-+.|++++|.+..+ +..|.++.+|+.+++..|.++.++. .+...||+.|+|.+|.|.++. +++.-++.|+.|||+.
T Consensus 80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSr- 158 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSR- 158 (873)
T ss_pred eeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhh-
Confidence 34566666665543 3345566666666666666555333 333344666666666655543 3455556666666665
Q ss_pred ccccccCcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCCeEEEEeccCCCCCCcccc--ccCceEE
Q 037851 607 SKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLEINILDAGILPSGFFS--RKLKRYR 684 (1053)
Q Consensus 607 ~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~--~~L~~l~ 684 (1053)
+.++.++...+..-.++++|++.+|.+ ..-....+..+++|-.|.++.+....+|...+. ++|+.|.
T Consensus 159 N~is~i~~~sfp~~~ni~~L~La~N~I-----------t~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~Ld 227 (873)
T KOG4194|consen 159 NLISEIPKPSFPAKVNIKKLNLASNRI-----------TTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLD 227 (873)
T ss_pred chhhcccCCCCCCCCCceEEeeccccc-----------cccccccccccchheeeecccCcccccCHHHhhhcchhhhhh
Confidence 455555555555555666666666555 122233344455555555655555555554432 4444444
Q ss_pred EEEcc----cCCCCCcccccceeeeccCCcccccccc--ccCccceeeccccCCcccccccccccccccccEEEeecCCC
Q 037851 685 IVVGF----QWAPFDKYKTRRTLKLKLNSRICLEEWR--GMKNVEYLRLDELPGLTNVLHDLDGEGFAELKHLNVKNNSN 758 (1053)
Q Consensus 685 l~~~~----~~~~~~~~~~l~~l~l~~~~~~~~~~~~--~l~~L~~L~L~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~ 758 (1053)
+..+. .+..+...++++.+++..+....+.+.. .+.++++|+|..+....-.-..+ .++..|+.|+++.+.
T Consensus 228 LnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~l--fgLt~L~~L~lS~Na- 304 (873)
T KOG4194|consen 228 LNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWL--FGLTSLEQLDLSYNA- 304 (873)
T ss_pred ccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccc--cccchhhhhccchhh-
Confidence 43221 2334456677777777777666655544 78888888887643221111112 467888888888775
Q ss_pred ceeecCCcccccCcCCccceeecccccccccccccccCccccCCccEEeEccCCCccccCCchhhhccCCccEEEecccc
Q 037851 759 FLCIVDPLQVRCGAFPMLESLVLQNLINLERICHGQLRAESFCNLKTIKVGSCHKLKNLFSFSIAKFLPQLKTIEVTECK 838 (1053)
Q Consensus 759 l~~i~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~ 838 (1053)
+..+. .....-.++|+.|+|++ +++.++..+.+ ..+..|++|.++.. .+..+.. +.+..+.+|++|++++|.
T Consensus 305 I~rih---~d~WsftqkL~~LdLs~-N~i~~l~~~sf--~~L~~Le~LnLs~N-si~~l~e-~af~~lssL~~LdLr~N~ 376 (873)
T KOG4194|consen 305 IQRIH---IDSWSFTQKLKELDLSS-NRITRLDEGSF--RVLSQLEELNLSHN-SIDHLAE-GAFVGLSSLHKLDLRSNE 376 (873)
T ss_pred hheee---cchhhhcccceeEeccc-cccccCChhHH--HHHHHhhhhccccc-chHHHHh-hHHHHhhhhhhhcCcCCe
Confidence 33221 11123457888888887 55665543332 23567777777664 3555533 446678888888888764
Q ss_pred hhhhHhhcCcccccccccccccceEecCCCcccccccccccccccccchhhhhHhhhccccCCCCccccccccccccceE
Q 037851 839 IVEEIFVSSNEEAIGEIALAQVRSLILRTLPLLASFSAFVKTTSTVEAKHNEIILENESQLHTPSSLFNVKLVLPNLEVL 918 (1053)
Q Consensus 839 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~si~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 918 (1053)
....+- +...-..++++|++|.+.+. ++++|+.. .+..+++|+.|
T Consensus 377 ls~~IE----Daa~~f~gl~~LrkL~l~gN-qlk~I~kr------------------------------Afsgl~~LE~L 421 (873)
T KOG4194|consen 377 LSWCIE----DAAVAFNGLPSLRKLRLTGN-QLKSIPKR------------------------------AFSGLEALEHL 421 (873)
T ss_pred EEEEEe----cchhhhccchhhhheeecCc-eeeecchh------------------------------hhccCccccee
Confidence 322111 11111235888888888876 56665532 12228889999
Q ss_pred eecccccceeccCCccccccccCCcccEEEEec
Q 037851 919 EVRDLNVAKIWHNQFSAAMSCNVQNLTRLVVLD 951 (1053)
Q Consensus 919 ~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~ 951 (1053)
++.++.+.++..+.|. .+ .|+.|.+..
T Consensus 422 dL~~NaiaSIq~nAFe-----~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 422 DLGDNAIASIQPNAFE-----PM-ELKELVMNS 448 (873)
T ss_pred cCCCCcceeecccccc-----cc-hhhhhhhcc
Confidence 9999988888776663 22 567766654
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.75 E-value=3.8e-21 Score=196.97 Aligned_cols=456 Identities=20% Similarity=0.215 Sum_probs=218.1
Q ss_pred cCCCceeEEeecCccccCCCcccccCccCcEEEcCCcccCC-ccccCCCCCCcEEEccCCCCcccchhhhccCCCCeeec
Q 037851 525 IGTPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDGCELED-IRVIGELKDLEILSLQGSKIEQLPREIGQLTQLKLLDL 603 (1053)
Q Consensus 525 ~~~~~Lr~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l 603 (1053)
.++..|.+|++++|...++|++++.+..+..|+.++|++.. |+.++.+..|+.|+.++|.+.++|++|+.+..|..|+.
T Consensus 65 ~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~ 144 (565)
T KOG0472|consen 65 KNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDA 144 (565)
T ss_pred hcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhc
Confidence 56777788888888777777777777777777777777766 67777777777777777777777777777777777777
Q ss_pred cCcccccccCcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCCeEEEEeccCCCCCCcccc-ccCce
Q 037851 604 SNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLEINILDAGILPSGFFS-RKLKR 682 (1053)
Q Consensus 604 ~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~-~~L~~ 682 (1053)
.+ +.+..+|++ ++++.+|..|++.+|.+ ...+.+.-+++.|++|+...+....+|+.+.. .+|..
T Consensus 145 ~~-N~i~slp~~-~~~~~~l~~l~~~~n~l------------~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~ 210 (565)
T KOG0472|consen 145 TN-NQISSLPED-MVNLSKLSKLDLEGNKL------------KALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLEL 210 (565)
T ss_pred cc-cccccCchH-HHHHHHHHHhhccccch------------hhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHH
Confidence 76 456666544 56666777776666654 12233333355555555555555555554422 22222
Q ss_pred EEEEEcc--cCCCCCcccccceeeeccCCcccccccc--ccCccceeeccccCCcccccccccccccccccEEEeecCCC
Q 037851 683 YRIVVGF--QWAPFDKYKTRRTLKLKLNSRICLEEWR--GMKNVEYLRLDELPGLTNVLHDLDGEGFAELKHLNVKNNSN 758 (1053)
Q Consensus 683 l~l~~~~--~~~~~~~~~~l~~l~l~~~~~~~~~~~~--~l~~L~~L~L~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~ 758 (1053)
|.+.... ..+.++....++++++..+....+|.-. .++++..|++.+.. ++.....+ ..+.+|++|+++++.
T Consensus 211 LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNk-lke~Pde~--clLrsL~rLDlSNN~- 286 (565)
T KOG0472|consen 211 LYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNK-LKEVPDEI--CLLRSLERLDLSNND- 286 (565)
T ss_pred HHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccc-cccCchHH--HHhhhhhhhcccCCc-
Confidence 2221110 1111222223333333333222222222 34444445544422 12211111 234445555555443
Q ss_pred ceeecCCcccccCcCCccceeecccccccccccccccCccccCCccEEeE-ccCCCcc----------ccC--Cchhhhc
Q 037851 759 FLCIVDPLQVRCGAFPMLESLVLQNLINLERICHGQLRAESFCNLKTIKV-GSCHKLK----------NLF--SFSIAKF 825 (1053)
Q Consensus 759 l~~i~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L~i-~~c~~l~----------~l~--~~~~~~~ 825 (1053)
........+.+ .|+.|.+.+.+ ++.+-...+..+.-.-|++|.= ..|..+. +.+ +.+....
T Consensus 287 ----is~Lp~sLgnl-hL~~L~leGNP-lrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~ 360 (565)
T KOG0472|consen 287 ----ISSLPYSLGNL-HLKFLALEGNP-LRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYA 360 (565)
T ss_pred ----cccCCcccccc-eeeehhhcCCc-hHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhh
Confidence 11112222333 34444444321 2211100000000000111100 0000000 000 0011223
Q ss_pred cCCccEEEecccchhhhHhhcCcccccccccccccceEecCCCcccccccccccccccccchhhhhHhhhccccCCCCcc
Q 037851 826 LPQLKTIEVTECKIVEEIFVSSNEEAIGEIALAQVRSLILRTLPLLASFSAFVKTTSTVEAKHNEIILENESQLHTPSSL 905 (1053)
Q Consensus 826 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~si~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 905 (1053)
.-+.++|++++ ..+..+|....+... -.-.....+++. .+..+|....... .........++ ..++
T Consensus 361 ~i~tkiL~~s~-~qlt~VPdEVfea~~----~~~Vt~VnfskN-qL~elPk~L~~lk---elvT~l~lsnn-----~isf 426 (565)
T KOG0472|consen 361 IITTKILDVSD-KQLTLVPDEVFEAAK----SEIVTSVNFSKN-QLCELPKRLVELK---ELVTDLVLSNN-----KISF 426 (565)
T ss_pred hhhhhhhcccc-cccccCCHHHHHHhh----hcceEEEecccc-hHhhhhhhhHHHH---HHHHHHHhhcC-----cccc
Confidence 33444555444 223322221110000 000111111111 1111111100000 00000000000 0111
Q ss_pred ccc-cccccccceEeecccccceeccCCccccccccCCcccEEEEecCccccccccchhHhhhccCcEEEEeccccccee
Q 037851 906 FNV-KLVLPNLEVLEVRDLNVAKIWHNQFSAAMSCNVQNLTRLVVLDCHKLRYVFSYSTAKRLGQLKHLVISRCPLLEEI 984 (1053)
Q Consensus 906 ~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~l~~l~sL~~L~i~~c~~l~~i 984 (1053)
.+. ...+++|..|+++++.+.+++.+. +.+..|+.|+|+. ++++.+ | ..+..+..||.+-+++++ +.++
T Consensus 427 v~~~l~~l~kLt~L~L~NN~Ln~LP~e~------~~lv~Lq~LnlS~-NrFr~l-P-~~~y~lq~lEtllas~nq-i~~v 496 (565)
T KOG0472|consen 427 VPLELSQLQKLTFLDLSNNLLNDLPEEM------GSLVRLQTLNLSF-NRFRML-P-ECLYELQTLETLLASNNQ-IGSV 496 (565)
T ss_pred chHHHHhhhcceeeecccchhhhcchhh------hhhhhhheecccc-cccccc-h-HHHhhHHHHHHHHhcccc-cccc
Confidence 111 122889999999998777765432 3466688888877 566665 2 234555566666666654 5555
Q ss_pred ecccCccccCCcccccccCccccccccccccccCCCCccCCCCcceEEEecCCC
Q 037851 985 VGKEGGVEADPSFVFPQLTILKLSSLPELRAFYPGIHTLECPILTKLEVSFCHK 1038 (1053)
Q Consensus 985 ~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~l~~~~~~~~~~sL~~L~I~~Cp~ 1038 (1053)
.. .....+.+|..|++.+ +.++++|+++.. +++|++|++.|.|-
T Consensus 497 d~-------~~l~nm~nL~tLDL~n-Ndlq~IPp~Lgn--mtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 497 DP-------SGLKNMRNLTTLDLQN-NDLQQIPPILGN--MTNLRHLELDGNPF 540 (565)
T ss_pred Ch-------HHhhhhhhcceeccCC-CchhhCChhhcc--ccceeEEEecCCcc
Confidence 22 2245678899999976 478999998765 59999999999883
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.73 E-value=8.3e-20 Score=196.41 Aligned_cols=286 Identities=17% Similarity=0.263 Sum_probs=160.8
Q ss_pred cceEEeeccCCCCCCCCCcccccCCCceeEEeecCccccCCCcccccCccCcEEEcCCcccCC-ccccCCCCCCcEEEcc
Q 037851 503 CSRISLYDNNINSPLKIPDNIFIGTPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDGCELED-IRVIGELKDLEILSLQ 581 (1053)
Q Consensus 503 ~~~l~l~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~-~~~i~~l~~L~~L~l~ 581 (1053)
+|.+.++.|..++. .+|.++ ..|..+++|.+....+..+|+.++.|.+|+.|.+.+|.+.. ...++.|+.|+.++++
T Consensus 9 VrGvDfsgNDFsg~-~FP~~v-~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R 86 (1255)
T KOG0444|consen 9 VRGVDFSGNDFSGD-RFPHDV-EQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVR 86 (1255)
T ss_pred eecccccCCcCCCC-cCchhH-HHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhh
Confidence 34444444444432 255554 57888888888888888888888888888888888887666 4667777888888888
Q ss_pred CCCCc--ccchhhhccCCCCeeeccCcccccccCcchhcCCccCceeecccccccccccCCcccccCCCh-hhhcCCCCC
Q 037851 582 GSKIE--QLPREIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASL-DELKNLSRL 658 (1053)
Q Consensus 582 ~~~l~--~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~l~~L 658 (1053)
.|+++ .+|..|.+|..|.+|||++ +.++..|.+ +.+-+++-.|++++|.+.. .+ .-+.+|..|
T Consensus 87 ~N~LKnsGiP~diF~l~dLt~lDLSh-NqL~EvP~~-LE~AKn~iVLNLS~N~Iet------------IPn~lfinLtDL 152 (1255)
T KOG0444|consen 87 DNNLKNSGIPTDIFRLKDLTILDLSH-NQLREVPTN-LEYAKNSIVLNLSYNNIET------------IPNSLFINLTDL 152 (1255)
T ss_pred ccccccCCCCchhcccccceeeecch-hhhhhcchh-hhhhcCcEEEEcccCcccc------------CCchHHHhhHhH
Confidence 88776 6788888888888888887 567777544 6777778888888777631 12 123455566
Q ss_pred CeEEEEeccCCCCCCcccc-ccCceEEEEEcccCCCCCcccccceeeeccCCcccc--ccccccCccceeeccccCCccc
Q 037851 659 TSLEINILDAGILPSGFFS-RKLKRYRIVVGFQWAPFDKYKTRRTLKLKLNSRICL--EEWRGMKNVEYLRLDELPGLTN 735 (1053)
Q Consensus 659 ~~L~i~~~~~~~~~~~~~~-~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~ 735 (1053)
-.|+++.+....+|+.+.- .+|++|.+ +++.-... ...-.+++|+.|.+++.....+
T Consensus 153 LfLDLS~NrLe~LPPQ~RRL~~LqtL~L--------------------s~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~ 212 (1255)
T KOG0444|consen 153 LFLDLSNNRLEMLPPQIRRLSMLQTLKL--------------------SNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLD 212 (1255)
T ss_pred hhhccccchhhhcCHHHHHHhhhhhhhc--------------------CCChhhHHHHhcCccchhhhhhhcccccchhh
Confidence 6677777766666665421 33333333 22211100 0000334444455554433322
Q ss_pred ccccccccccccccEEEeecCCCceeecCCcccccCcCCccceeecccccccccccccccCccccCCccEEeEccCCCcc
Q 037851 736 VLHDLDGEGFAELKHLNVKNNSNFLCIVDPLQVRCGAFPMLESLVLQNLINLERICHGQLRAESFCNLKTIKVGSCHKLK 815 (1053)
Q Consensus 736 ~~~~l~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L~i~~c~~l~ 815 (1053)
.+|.. ...+.||..++++.++ +..+++. .-.+++|..|++++ +.++++ ....+.-.+|+.|+++.. .|+
T Consensus 213 N~Pts-ld~l~NL~dvDlS~N~-Lp~vPec----ly~l~~LrrLNLS~-N~iteL---~~~~~~W~~lEtLNlSrN-QLt 281 (1255)
T KOG0444|consen 213 NIPTS-LDDLHNLRDVDLSENN-LPIVPEC----LYKLRNLRRLNLSG-NKITEL---NMTEGEWENLETLNLSRN-QLT 281 (1255)
T ss_pred cCCCc-hhhhhhhhhccccccC-CCcchHH----HhhhhhhheeccCc-Cceeee---eccHHHHhhhhhhccccc-hhc
Confidence 22211 1445566666665543 2222111 22345566666665 334433 122233445555555553 355
Q ss_pred ccCCchhhhccCCccEEEeccc
Q 037851 816 NLFSFSIAKFLPQLKTIEVTEC 837 (1053)
Q Consensus 816 ~l~~~~~~~~l~~L~~L~l~~c 837 (1053)
.+|. .+-.++.|+.|.+.+|
T Consensus 282 ~LP~--avcKL~kL~kLy~n~N 301 (1255)
T KOG0444|consen 282 VLPD--AVCKLTKLTKLYANNN 301 (1255)
T ss_pred cchH--HHhhhHHHHHHHhccC
Confidence 5543 3445555555555554
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.72 E-value=3.6e-19 Score=201.40 Aligned_cols=111 Identities=31% Similarity=0.436 Sum_probs=97.8
Q ss_pred CCcccccCCCceeEEeecCccccCCCcccccCccCcEEEcCCcccCC-ccccCCCCCCcEEEccCCCCcccchhhhccCC
Q 037851 519 IPDNIFIGTPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDGCELED-IRVIGELKDLEILSLQGSKIEQLPREIGQLTQ 597 (1053)
Q Consensus 519 ~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~ 597 (1053)
.|-++..+.-+|++|++++|.+..+|..+..+.+|+.|+++.|.+.. |.+++++.+|++|.|.+|.+..+|.++..+++
T Consensus 36 ~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lkn 115 (1081)
T KOG0618|consen 36 RPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKN 115 (1081)
T ss_pred CchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhc
Confidence 34445556666999999999999999999999999999999999887 78899999999999999999999999999999
Q ss_pred CCeeeccCcccccccCcchhcCCccCceeecccc
Q 037851 598 LKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANC 631 (1053)
Q Consensus 598 L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 631 (1053)
|++|+++. +.+..+|+ .+..++.++.+..++|
T Consensus 116 l~~LdlS~-N~f~~~Pl-~i~~lt~~~~~~~s~N 147 (1081)
T KOG0618|consen 116 LQYLDLSF-NHFGPIPL-VIEVLTAEEELAASNN 147 (1081)
T ss_pred ccccccch-hccCCCch-hHHhhhHHHHHhhhcc
Confidence 99999999 56777754 4788899999888877
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.71 E-value=1.2e-20 Score=193.29 Aligned_cols=220 Identities=25% Similarity=0.274 Sum_probs=117.4
Q ss_pred CCcccccCCCceeEEeecCccccCCCcccccCccCcEEEcCCcccCC-ccccCCCCCCcEEEccCCCCcccchhhhccCC
Q 037851 519 IPDNIFIGTPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDGCELED-IRVIGELKDLEILSLQGSKIEQLPREIGQLTQ 597 (1053)
Q Consensus 519 ~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~ 597 (1053)
+|+.+ +.+..+..|+.++|.+..+|+.++.+..|+.|+.++|.+.. +++++.+..|..|+..+|++..+|.+++.+.+
T Consensus 83 lp~ai-g~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~ 161 (565)
T KOG0472|consen 83 LPAAI-GELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSK 161 (565)
T ss_pred CCHHH-HHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHH
Confidence 44443 34445555555555555555555555555555555555544 45555555555555555555555555555555
Q ss_pred CCeeeccCcccccccCcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCCeEEEEeccCCCCCCcccc
Q 037851 598 LKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLEINILDAGILPSGFFS 677 (1053)
Q Consensus 598 L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~ 677 (1053)
|..|++.+ +.+..+|+..+. ++.|++|+...|-+ ...+.+++.|.+|..|++..++...+|..-..
T Consensus 162 l~~l~~~~-n~l~~l~~~~i~-m~~L~~ld~~~N~L------------~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gc 227 (565)
T KOG0472|consen 162 LSKLDLEG-NKLKALPENHIA-MKRLKHLDCNSNLL------------ETLPPELGGLESLELLYLRRNKIRFLPEFPGC 227 (565)
T ss_pred HHHhhccc-cchhhCCHHHHH-HHHHHhcccchhhh------------hcCChhhcchhhhHHHHhhhcccccCCCCCcc
Confidence 55555555 345555554332 55555555544433 23444555555555555555554444422211
Q ss_pred ccCceEEEEEccc----CCCCCcccccceeeeccCCcccccccc-ccCccceeeccccCCcccccccccccccccccEEE
Q 037851 678 RKLKRYRIVVGFQ----WAPFDKYKTRRTLKLKLNSRICLEEWR-GMKNVEYLRLDELPGLTNVLHDLDGEGFAELKHLN 752 (1053)
Q Consensus 678 ~~L~~l~l~~~~~----~~~~~~~~~l~~l~l~~~~~~~~~~~~-~l~~L~~L~L~~~~~~~~~~~~l~~~~l~~L~~L~ 752 (1053)
..|.++.+..... -+.....+.+..+++..+.-..+|... .+++|++|++++..- ......+ +.+ .|+.|.
T Consensus 228 s~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~i-s~Lp~sL--gnl-hL~~L~ 303 (565)
T KOG0472|consen 228 SLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDI-SSLPYSL--GNL-HLKFLA 303 (565)
T ss_pred HHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCcc-ccCCccc--ccc-eeeehh
Confidence 2222222211100 001123345556666666666666655 789999999998432 2223333 566 788888
Q ss_pred eecCC
Q 037851 753 VKNNS 757 (1053)
Q Consensus 753 l~~~~ 757 (1053)
+.+++
T Consensus 304 leGNP 308 (565)
T KOG0472|consen 304 LEGNP 308 (565)
T ss_pred hcCCc
Confidence 88886
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.65 E-value=4e-18 Score=193.07 Aligned_cols=419 Identities=24% Similarity=0.223 Sum_probs=221.4
Q ss_pred ceEEeeccCCCCCCCCCcccccCCCceeEEeecCccccCCCcccccCccCcEEEcCCcccCC-ccccCCCCCCcEEEccC
Q 037851 504 SRISLYDNNINSPLKIPDNIFIGTPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDGCELED-IRVIGELKDLEILSLQG 582 (1053)
Q Consensus 504 ~~l~l~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~-~~~i~~l~~L~~L~l~~ 582 (1053)
.++.+..+.... .|..+ ..+.+|+.|+++.|.+.++|.++.++.+|++|+|.+|.+.. |.++..+++|++|++++
T Consensus 48 ~~l~lsnn~~~~---fp~~i-t~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~ 123 (1081)
T KOG0618|consen 48 KSLDLSNNQISS---FPIQI-TLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSF 123 (1081)
T ss_pred EEeecccccccc---CCchh-hhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccch
Confidence 444555444433 45444 56889999999999999999999999999999999999776 88999999999999999
Q ss_pred CCCcccchhhhccCCCCeeeccCcccccccCcchhcCCccCceeecccccccccccCCcccccCCChh------------
Q 037851 583 SKIEQLPREIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLD------------ 650 (1053)
Q Consensus 583 ~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~------------ 650 (1053)
|.+...|.-+..+..+..++.+++..+..++ ... .+++++..+.+ ....+.
T Consensus 124 N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg-----~~~-ik~~~l~~n~l-----------~~~~~~~i~~l~~~ldLr 186 (1081)
T KOG0618|consen 124 NHFGPIPLVIEVLTAEEELAASNNEKIQRLG-----QTS-IKKLDLRLNVL-----------GGSFLIDIYNLTHQLDLR 186 (1081)
T ss_pred hccCCCchhHHhhhHHHHHhhhcchhhhhhc-----ccc-chhhhhhhhhc-----------ccchhcchhhhheeeecc
Confidence 9999999999999999999888853333322 111 44444444433 112222
Q ss_pred -------hhcCCCCCCeEEEEeccCCCCCCccccccCceEEEEEcccC--CCCCcccccceeeeccCCcccccccc-ccC
Q 037851 651 -------ELKNLSRLTSLEINILDAGILPSGFFSRKLKRYRIVVGFQW--APFDKYKTRRTLKLKLNSRICLEEWR-GMK 720 (1053)
Q Consensus 651 -------~L~~l~~L~~L~i~~~~~~~~~~~~~~~~L~~l~l~~~~~~--~~~~~~~~l~~l~l~~~~~~~~~~~~-~l~ 720 (1053)
.+..+.+|+.+....+....+. +...+++.+....+... ....-+..++.+.++.+....+|+|. .+.
T Consensus 187 ~N~~~~~dls~~~~l~~l~c~rn~ls~l~--~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~ 264 (1081)
T KOG0618|consen 187 YNEMEVLDLSNLANLEVLHCERNQLSELE--ISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACA 264 (1081)
T ss_pred cchhhhhhhhhccchhhhhhhhcccceEE--ecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcc
Confidence 2333333333332222211110 00122333332222111 11123345555666665555666666 666
Q ss_pred ccceeeccccCCcccccccccccccccccEEEeecCCCceeecCCcccccCcCCccceeecccccccccccccccCcccc
Q 037851 721 NVEYLRLDELPGLTNVLHDLDGEGFAELKHLNVKNNSNFLCIVDPLQVRCGAFPMLESLVLQNLINLERICHGQLRAESF 800 (1053)
Q Consensus 721 ~L~~L~L~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~ 800 (1053)
+|+.+......-+ ..+..+ ....+|+.|.+.+|. +++++. +...+.+|++|++.. +++...+...+.. .-
T Consensus 265 nle~l~~n~N~l~-~lp~ri--~~~~~L~~l~~~~ne-l~yip~----~le~~~sL~tLdL~~-N~L~~lp~~~l~v-~~ 334 (1081)
T KOG0618|consen 265 NLEALNANHNRLV-ALPLRI--SRITSLVSLSAAYNE-LEYIPP----FLEGLKSLRTLDLQS-NNLPSLPDNFLAV-LN 334 (1081)
T ss_pred cceEecccchhHH-hhHHHH--hhhhhHHHHHhhhhh-hhhCCC----cccccceeeeeeehh-ccccccchHHHhh-hh
Confidence 6666666553321 111111 234556666555553 333321 133455666666665 3444443211100 00
Q ss_pred CCccEEeEccCCCccccCCchhhhccCCccEEEecccchhhhHhhcCcccccccccccccceEecCCCcccccccccccc
Q 037851 801 CNLKTIKVGSCHKLKNLFSFSIAKFLPQLKTIEVTECKIVEEIFVSSNEEAIGEIALAQVRSLILRTLPLLASFSAFVKT 880 (1053)
Q Consensus 801 ~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~si~~~~~~ 880 (1053)
..|..|..+. .++..+|. ..-...+.|+.|.+.+|..-+..... ...+.+||.|++.+. .|.++|....
T Consensus 335 ~~l~~ln~s~-n~l~~lp~-~~e~~~~~Lq~LylanN~Ltd~c~p~-------l~~~~hLKVLhLsyN-rL~~fpas~~- 403 (1081)
T KOG0618|consen 335 ASLNTLNVSS-NKLSTLPS-YEENNHAALQELYLANNHLTDSCFPV-------LVNFKHLKVLHLSYN-RLNSFPASKL- 403 (1081)
T ss_pred HHHHHHhhhh-cccccccc-ccchhhHHHHHHHHhcCcccccchhh-------hccccceeeeeeccc-ccccCCHHHH-
Confidence 1133333322 23333332 12234555666666655332222211 123566666666655 3344433210
Q ss_pred cccccchhhhhHhhhccccCCCCccccccccccccceEeecccccceeccCCccccccccCCcccEEEEecCcccccccc
Q 037851 881 TSTVEAKHNEIILENESQLHTPSSLFNVKLVLPNLEVLEVRDLNVAKIWHNQFSAAMSCNVQNLTRLVVLDCHKLRYVFS 960 (1053)
Q Consensus 881 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~ 960 (1053)
..++.|+.|+++|+.++.++.. ..++..|++|.-.+ +++... |
T Consensus 404 -----------------------------~kle~LeeL~LSGNkL~~Lp~t------va~~~~L~tL~ahs-N~l~~f-P 446 (1081)
T KOG0618|consen 404 -----------------------------RKLEELEELNLSGNKLTTLPDT------VANLGRLHTLRAHS-NQLLSF-P 446 (1081)
T ss_pred -----------------------------hchHHhHHHhcccchhhhhhHH------HHhhhhhHHHhhcC-Cceeec-h
Confidence 1156666777777766655421 23445555554433 333333 3
Q ss_pred chhHhhhccCcEEEEecccccceeecccCccccCCcccc-cccCccccccccccc
Q 037851 961 YSTAKRLGQLKHLVISRCPLLEEIVGKEGGVEADPSFVF-PQLTILKLSSLPELR 1014 (1053)
Q Consensus 961 ~~~l~~l~sL~~L~i~~c~~l~~i~~~~~~~~~~~~~~~-p~L~~L~l~~c~~L~ 1014 (1053)
.+..++.|+.+|++.+. |..+... .... |+|++|++++++.+.
T Consensus 447 --e~~~l~qL~~lDlS~N~-L~~~~l~--------~~~p~p~LkyLdlSGN~~l~ 490 (1081)
T KOG0618|consen 447 --ELAQLPQLKVLDLSCNN-LSEVTLP--------EALPSPNLKYLDLSGNTRLV 490 (1081)
T ss_pred --hhhhcCcceEEecccch-hhhhhhh--------hhCCCcccceeeccCCcccc
Confidence 45567777777777654 4444211 1122 677777777776543
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.40 E-value=7.3e-15 Score=133.53 Aligned_cols=155 Identities=27% Similarity=0.446 Sum_probs=132.1
Q ss_pred cceEEeeccCCCCCCCCCcccccCCCceeEEeecCccccCCCcccccCccCcEEEcCCcccCC-ccccCCCCCCcEEEcc
Q 037851 503 CSRISLYDNNINSPLKIPDNIFIGTPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDGCELED-IRVIGELKDLEILSLQ 581 (1053)
Q Consensus 503 ~~~l~l~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~-~~~i~~l~~L~~L~l~ 581 (1053)
+.++.+++|.... +|+++ ..+.+|.+|++++|.++++|.+++++..||.|++.-|++.. |..||.++-|++|||.
T Consensus 35 ITrLtLSHNKl~~---vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldlt 110 (264)
T KOG0617|consen 35 ITRLTLSHNKLTV---VPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLT 110 (264)
T ss_pred hhhhhcccCceee---cCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhcc
Confidence 5666666655443 67775 57899999999999999999999999999999999999766 8999999999999999
Q ss_pred CCCCc--ccchhhhccCCCCeeeccCcccccccCcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCC
Q 037851 582 GSKIE--QLPREIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLT 659 (1053)
Q Consensus 582 ~~~l~--~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~ 659 (1053)
+|++. .+|..+.-+.-|+-|+++. +.+..+|+. +++|++||.|.+..|.+ -..+.+++.+..|+
T Consensus 111 ynnl~e~~lpgnff~m~tlralyl~d-ndfe~lp~d-vg~lt~lqil~lrdndl------------l~lpkeig~lt~lr 176 (264)
T KOG0617|consen 111 YNNLNENSLPGNFFYMTTLRALYLGD-NDFEILPPD-VGKLTNLQILSLRDNDL------------LSLPKEIGDLTRLR 176 (264)
T ss_pred ccccccccCCcchhHHHHHHHHHhcC-CCcccCChh-hhhhcceeEEeeccCch------------hhCcHHHHHHHHHH
Confidence 99876 7898888889999999998 678888766 89999999999988875 35678899999999
Q ss_pred eEEEEeccCCCCCCcc
Q 037851 660 SLEINILDAGILPSGF 675 (1053)
Q Consensus 660 ~L~i~~~~~~~~~~~~ 675 (1053)
.|.|.++....+|+.+
T Consensus 177 elhiqgnrl~vlppel 192 (264)
T KOG0617|consen 177 ELHIQGNRLTVLPPEL 192 (264)
T ss_pred HHhcccceeeecChhh
Confidence 9999998887777765
No 16
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.37 E-value=4e-11 Score=153.28 Aligned_cols=290 Identities=14% Similarity=0.210 Sum_probs=177.8
Q ss_pred cccccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcC-CcCHHHHHHHHHHHhC
Q 037851 152 YEAFESRMSTLKSLQNALLDPDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSD-TPDIKKVQGELADQLG 230 (1053)
Q Consensus 152 ~~~~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~ 230 (1053)
...++-|...++.+-+ ....+++.|.|++|.||||++..+.+. ++.++|+++.. +.+...+...++..++
T Consensus 13 ~~~~~~R~rl~~~l~~---~~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~~l~ 83 (903)
T PRK04841 13 LHNTVVRERLLAKLSG---ANNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIAALQ 83 (903)
T ss_pred ccccCcchHHHHHHhc---ccCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHHHHH
Confidence 4466777655555532 235689999999999999999998853 22689999964 4466667677777664
Q ss_pred CCCCCC-------------CChhHHHHHHHHHHhc-CCcEEEEEcCCCCcc--chhhhcCCC-CCCCCCcEEEEEecChH
Q 037851 231 MQFDEE-------------SDVPGRARKLYARLQK-ENKILIILDNIWEDL--DLEKVGVPS-GNDCRGCKVLLTARDRH 293 (1053)
Q Consensus 231 ~~~~~~-------------~~~~~~~~~l~~~l~~-~~~~LlvlDdv~~~~--~~~~l~~~~-~~~~~gs~iivTtR~~~ 293 (1053)
...... .........+...+.. +.+++|||||+...+ ....+...+ .....+.++|||||...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~ 163 (903)
T PRK04841 84 QATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLP 163 (903)
T ss_pred HhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCC
Confidence 211110 1112233444445443 689999999996642 111121111 12234668889999842
Q ss_pred HH---Hh-hCCCccccc----CCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCchHHHHHHHHHhcCCCHHHHH
Q 037851 294 VL---ES-IGSKTLRID----VLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPIAIVTLAKALRNKTSVSTWK 365 (1053)
Q Consensus 294 v~---~~-~~~~~~~l~----~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~L~~~~~~~~w~ 365 (1053)
-. .. ......++. +|+.+|+.++|....+.... .+...+|.+.|+|.|+++..++..+....... .
T Consensus 164 ~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~~----~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~--~ 237 (903)
T PRK04841 164 PLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPIE----AAESSRLCDDVEGWATALQLIALSARQNNSSL--H 237 (903)
T ss_pred CCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCCC----HHHHHHHHHHhCChHHHHHHHHHHHhhCCCch--h
Confidence 11 11 113334455 99999999999887764332 34578899999999999999988876542210 0
Q ss_pred HHHHHhcCCCCCchhhhHHHhhhhHHh-hhcccChhhhHHHHHhcCCCCCCCchhHHHHHHHHHhccccCccCHHHHHHH
Q 037851 366 DALRQLKRPSHRNFEGVLAKTYSAIEL-SYKYLREEELKKLFLQCSLMGSPQASTLNLLKYAIGLGIVKGVGTVEEARDK 444 (1053)
Q Consensus 366 ~~l~~l~~~~~~~~~~~~~~~~~~l~~-sy~~L~~~~lk~cfl~~s~fp~~~~~~~~li~~w~a~g~~~~~~~~~~~~~~ 444 (1053)
.....+... ....+...+.- -|+.||+ +.+..++..|+++ .++.+-+-... +. .+
T Consensus 238 ~~~~~~~~~-------~~~~~~~~l~~~v~~~l~~-~~~~~l~~~a~~~--~~~~~l~~~l~-------~~---~~---- 293 (903)
T PRK04841 238 DSARRLAGI-------NASHLSDYLVEEVLDNVDL-ETRHFLLRCSVLR--SMNDALIVRVT-------GE---EN---- 293 (903)
T ss_pred hhhHhhcCC-------CchhHHHHHHHHHHhcCCH-HHHHHHHHhcccc--cCCHHHHHHHc-------CC---Cc----
Confidence 111111100 01223333332 3779998 6899999999987 44433221111 11 11
Q ss_pred HHHHHHHHHhhccccc-C--CCCeEEehHHHHHHHHHHh
Q 037851 445 VNTLVDQLRDACLLLD-G--TNDCFSMHDVVRDVAISIA 480 (1053)
Q Consensus 445 ~~~~~~~L~~~~l~~~-~--~~~~~~mHdlv~~~a~~~~ 480 (1053)
..+.+++|.+.+++.. . ....|++|++++++++...
T Consensus 294 ~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 294 GQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred HHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 2356888888998653 2 3347999999999998764
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.28 E-value=3.3e-11 Score=142.68 Aligned_cols=254 Identities=21% Similarity=0.161 Sum_probs=150.3
Q ss_pred eEEeeccCCCCCCCCCcccccCCCceeEEeecCccccCCCcccccCccCcEEEcCCcccCCccccCCCCCCcEEEccCCC
Q 037851 505 RISLYDNNINSPLKIPDNIFIGTPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDGCELEDIRVIGELKDLEILSLQGSK 584 (1053)
Q Consensus 505 ~l~l~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~~~~i~~l~~L~~L~l~~~~ 584 (1053)
.+.+..+... .+|+.+. .+|+.|++++|.++.+|.. +++|++|++++|.++.++. ..++|++|++++|.
T Consensus 205 ~LdLs~~~Lt---sLP~~l~---~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~--lp~sL~~L~Ls~N~ 273 (788)
T PRK15387 205 VLNVGESGLT---TLPDCLP---AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNP 273 (788)
T ss_pred EEEcCCCCCC---cCCcchh---cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccC--cccccceeeccCCc
Confidence 4444444333 3666543 3677788888888777752 4678888888887776432 24677888888887
Q ss_pred CcccchhhhccCCCCeeeccCcccccccCcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCCeEEEE
Q 037851 585 IEQLPREIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLEIN 664 (1053)
Q Consensus 585 l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~ 664 (1053)
+..+|.. ..+|+.|++++ +.+..+|. .+++|+.|++++|.+.. +..+ ..+|+.|.++
T Consensus 274 L~~Lp~l---p~~L~~L~Ls~-N~Lt~LP~----~p~~L~~LdLS~N~L~~-------------Lp~l--p~~L~~L~Ls 330 (788)
T PRK15387 274 LTHLPAL---PSGLCKLWIFG-NQLTSLPV----LPPGLQELSVSDNQLAS-------------LPAL--PSELCKLWAY 330 (788)
T ss_pred hhhhhhc---hhhcCEEECcC-Cccccccc----cccccceeECCCCcccc-------------CCCC--cccccccccc
Confidence 7777753 24577778877 46666653 24678888887776521 1111 1245566666
Q ss_pred eccCCCCCCccccccCceEEEEEcccCCCCCcccccceeeeccCCccccccccccCccceeeccccCCcccccccccccc
Q 037851 665 ILDAGILPSGFFSRKLKRYRIVVGFQWAPFDKYKTRRTLKLKLNSRICLEEWRGMKNVEYLRLDELPGLTNVLHDLDGEG 744 (1053)
Q Consensus 665 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~ 744 (1053)
.+....+|.. +..|+.|+++.+....+|. ..++|+.|++.++. +.. ++. .
T Consensus 331 ~N~L~~LP~l----------------------p~~Lq~LdLS~N~Ls~LP~--lp~~L~~L~Ls~N~-L~~-LP~----l 380 (788)
T PRK15387 331 NNQLTSLPTL----------------------PSGLQELSVSDNQLASLPT--LPSELYKLWAYNNR-LTS-LPA----L 380 (788)
T ss_pred cCcccccccc----------------------ccccceEecCCCccCCCCC--CCcccceehhhccc-ccc-Ccc----c
Confidence 5554444421 1234445555544444443 24566777776532 222 222 2
Q ss_pred cccccEEEeecCCCceeecCCcccccCcCCccceeecccccccccccccccCccccCCccEEeEccCCCccccCCchhhh
Q 037851 745 FAELKHLNVKNNSNFLCIVDPLQVRCGAFPMLESLVLQNLINLERICHGQLRAESFCNLKTIKVGSCHKLKNLFSFSIAK 824 (1053)
Q Consensus 745 l~~L~~L~l~~~~~l~~i~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~ 824 (1053)
.++|+.|++++|. +..++ ..+++|+.|+++++ .+..++. .+.+|+.|+++++ +++.+|. .+.
T Consensus 381 ~~~L~~LdLs~N~-Lt~LP-------~l~s~L~~LdLS~N-~LssIP~------l~~~L~~L~Ls~N-qLt~LP~--sl~ 442 (788)
T PRK15387 381 PSGLKELIVSGNR-LTSLP-------VLPSELKELMVSGN-RLTSLPM------LPSGLLSLSVYRN-QLTRLPE--SLI 442 (788)
T ss_pred ccccceEEecCCc-ccCCC-------CcccCCCEEEccCC-cCCCCCc------chhhhhhhhhccC-cccccCh--HHh
Confidence 3568888887764 33221 12457888888874 4555431 2346777888775 4677754 356
Q ss_pred ccCCccEEEecccchh
Q 037851 825 FLPQLKTIEVTECKIV 840 (1053)
Q Consensus 825 ~l~~L~~L~l~~c~~l 840 (1053)
.+++|+.|++++|+.-
T Consensus 443 ~L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 443 HLSSETTVNLEGNPLS 458 (788)
T ss_pred hccCCCeEECCCCCCC
Confidence 7888888888887644
No 18
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.25 E-value=4.5e-12 Score=153.47 Aligned_cols=102 Identities=32% Similarity=0.399 Sum_probs=84.5
Q ss_pred cceEEeeccCCCCCCCCCcccccCCCceeEEeecCcc-ccCCCcccccCccCcEEEcCCcccCC-ccccCCCCCCcEEEc
Q 037851 503 CSRISLYDNNINSPLKIPDNIFIGTPKLKVLDFTRMR-LLSLPSSIHLLTDLRTLCLDGCELED-IRVIGELKDLEILSL 580 (1053)
Q Consensus 503 ~~~l~l~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~-~~~lp~~i~~l~~Lr~L~L~~~~~~~-~~~i~~l~~L~~L~l 580 (1053)
.+.+-+..+.. ....++..+|..++.||+||+++|. +..+|++|+.|.|||||+++++.++. |..+++|+.|.||++
T Consensus 547 L~tLll~~n~~-~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl 625 (889)
T KOG4658|consen 547 LRTLLLQRNSD-WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNL 625 (889)
T ss_pred cceEEEeecch-hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheecc
Confidence 45555555432 1234788889999999999999765 56899999999999999999999988 899999999999999
Q ss_pred cCCCC-cccchhhhccCCCCeeeccC
Q 037851 581 QGSKI-EQLPREIGQLTQLKLLDLSN 605 (1053)
Q Consensus 581 ~~~~l-~~lp~~i~~L~~L~~L~l~~ 605 (1053)
..+.- ..+|..+..|.+||+|.+..
T Consensus 626 ~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 626 EVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred ccccccccccchhhhcccccEEEeec
Confidence 99864 45566667799999999987
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.24 E-value=2.1e-13 Score=124.17 Aligned_cols=148 Identities=23% Similarity=0.365 Sum_probs=127.1
Q ss_pred CCCceeEEeecCccccCCCcccccCccCcEEEcCCcccCC-ccccCCCCCCcEEEccCCCCcccchhhhccCCCCeeecc
Q 037851 526 GTPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDGCELED-IRVIGELKDLEILSLQGSKIEQLPREIGQLTQLKLLDLS 604 (1053)
Q Consensus 526 ~~~~Lr~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~ 604 (1053)
.+.+...|.+|+|.++.+|+.|..+.+|++|++++|.+++ |.+++.+++|+.|++.-|.+..+|.++|.++-|+.||++
T Consensus 31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldlt 110 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLT 110 (264)
T ss_pred chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhcc
Confidence 6788899999999999999999999999999999999988 899999999999999999999999999999999999999
Q ss_pred CcccccccCcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCCeEEEEeccCCCCCCcccc-ccCceE
Q 037851 605 NCSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLEINILDAGILPSGFFS-RKLKRY 683 (1053)
Q Consensus 605 ~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~-~~L~~l 683 (1053)
.++--....|+-+..|+.|+.|+++.|.+ ...+.+.+++++|+.|.+..++...+|..+.. ..|+.|
T Consensus 111 ynnl~e~~lpgnff~m~tlralyl~dndf------------e~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrel 178 (264)
T KOG0617|consen 111 YNNLNENSLPGNFFYMTTLRALYLGDNDF------------EILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLREL 178 (264)
T ss_pred ccccccccCCcchhHHHHHHHHHhcCCCc------------ccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHH
Confidence 85544444456677899999999999876 45677889999999999999988888877643 445544
Q ss_pred EE
Q 037851 684 RI 685 (1053)
Q Consensus 684 ~l 685 (1053)
.|
T Consensus 179 hi 180 (264)
T KOG0617|consen 179 HI 180 (264)
T ss_pred hc
Confidence 44
No 20
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.21 E-value=2.9e-10 Score=130.01 Aligned_cols=289 Identities=19% Similarity=0.205 Sum_probs=186.3
Q ss_pred cccccchHHHHHHHHHHhcC-CCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCC-cCHHHHHHHHHHHh
Q 037851 152 YEAFESRMSTLKSLQNALLD-PDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDT-PDIKKVQGELADQL 229 (1053)
Q Consensus 152 ~~~~~gR~~~~~~l~~~l~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l 229 (1053)
....+-|...+ +.|.+ .+.+.+.|..++|.|||||+.++..... .=..+.|.+.++. .+...+..-++..+
T Consensus 18 ~~~~v~R~rL~----~~L~~~~~~RL~li~APAGfGKttl~aq~~~~~~---~~~~v~Wlslde~dndp~rF~~yLi~al 90 (894)
T COG2909 18 PDNYVVRPRLL----DRLRRANDYRLILISAPAGFGKTTLLAQWRELAA---DGAAVAWLSLDESDNDPARFLSYLIAAL 90 (894)
T ss_pred cccccccHHHH----HHHhcCCCceEEEEeCCCCCcHHHHHHHHHHhcC---cccceeEeecCCccCCHHHHHHHHHHHH
Confidence 45566665444 44443 4779999999999999999999987332 2346899999865 46778888888877
Q ss_pred CCCCCCCC-------------ChhHHHHHHHHHHh-cCCcEEEEEcCCCCcc------chhhhcCCCCCCCCCcEEEEEe
Q 037851 230 GMQFDEES-------------DVPGRARKLYARLQ-KENKILIILDNIWEDL------DLEKVGVPSGNDCRGCKVLLTA 289 (1053)
Q Consensus 230 ~~~~~~~~-------------~~~~~~~~l~~~l~-~~~~~LlvlDdv~~~~------~~~~l~~~~~~~~~gs~iivTt 289 (1053)
+...+... +.......+...+. -.++..+||||-.-.. ..+.+... ...+-.+||||
T Consensus 91 ~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~---~P~~l~lvv~S 167 (894)
T COG2909 91 QQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKH---APENLTLVVTS 167 (894)
T ss_pred HHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHh---CCCCeEEEEEe
Confidence 64333222 22233444544443 2568899999976432 12333333 33577899999
Q ss_pred cChHHHHh----hCCCccccc----CCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCchHHHHHHHHHhcCCCH
Q 037851 290 RDRHVLES----IGSKTLRID----VLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPIAIVTLAKALRNKTSV 361 (1053)
Q Consensus 290 R~~~v~~~----~~~~~~~l~----~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~L~~~~~~ 361 (1053)
|...-... ......++. .++.+|+.++|....+...+ +...+.+.+..+|.+-|+..++-.++++.+.
T Consensus 168 R~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld----~~~~~~L~~~teGW~~al~L~aLa~~~~~~~ 243 (894)
T COG2909 168 RSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPLD----AADLKALYDRTEGWAAALQLIALALRNNTSA 243 (894)
T ss_pred ccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCCC----hHHHHHHHhhcccHHHHHHHHHHHccCCCcH
Confidence 98853321 113333443 48999999999988754433 2347889999999999999999999855444
Q ss_pred HHHHHHHHHhcCCCCCchhhhHHHhhhh-HHhhhcccChhhhHHHHHhcCCCCCCCchhHHHHHHHHHhccccCccCHHH
Q 037851 362 STWKDALRQLKRPSHRNFEGVLAKTYSA-IELSYKYLREEELKKLFLQCSLMGSPQASTLNLLKYAIGLGIVKGVGTVEE 440 (1053)
Q Consensus 362 ~~w~~~l~~l~~~~~~~~~~~~~~~~~~-l~~sy~~L~~~~lk~cfl~~s~fp~~~~~~~~li~~w~a~g~~~~~~~~~~ 440 (1053)
+.--..+. +..+-+.+- ..--++.||+ +++..++-||+++. | -.+|+..-.
T Consensus 244 ~q~~~~Ls-----------G~~~~l~dYL~eeVld~Lp~-~l~~FLl~~svl~~--f-~~eL~~~Lt------------- 295 (894)
T COG2909 244 EQSLRGLS-----------GAASHLSDYLVEEVLDRLPP-ELRDFLLQTSVLSR--F-NDELCNALT------------- 295 (894)
T ss_pred HHHhhhcc-----------chHHHHHHHHHHHHHhcCCH-HHHHHHHHHHhHHH--h-hHHHHHHHh-------------
Confidence 43322222 111111111 1233578998 69999999999972 1 122322211
Q ss_pred HHHHHHHHHHHHHhhcccccC---CCCeEEehHHHHHHHHHHhcc
Q 037851 441 ARDKVNTLVDQLRDACLLLDG---TNDCFSMHDVVRDVAISIASR 482 (1053)
Q Consensus 441 ~~~~~~~~~~~L~~~~l~~~~---~~~~~~mHdlv~~~a~~~~~~ 482 (1053)
.++.+..++++|..++|+... ..+.|+.|.+..||.+..-..
T Consensus 296 g~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 296 GEENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred cCCcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhcc
Confidence 112344678999999987533 667899999999999865443
No 21
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.17 E-value=4.6e-09 Score=120.05 Aligned_cols=289 Identities=16% Similarity=0.122 Sum_probs=167.4
Q ss_pred CcccccchHHHHHHHHHHhc----CCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHH
Q 037851 151 GYEAFESRMSTLKSLQNALL----DPDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELA 226 (1053)
Q Consensus 151 ~~~~~~gR~~~~~~l~~~l~----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 226 (1053)
.++.++||+++++++...+. ......+.|+|++|+|||++++.++++.......-.++|+++....+...++..|+
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~ 107 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIA 107 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHH
Confidence 44578999999999988874 33456788999999999999999999886544234567788877778889999999
Q ss_pred HHhCCC-CCC-CCChhHHHHHHHHHHhc-CCcEEEEEcCCCCcc------chhhhcCCCCCCCCCcE--EEEEecChHHH
Q 037851 227 DQLGMQ-FDE-ESDVPGRARKLYARLQK-ENKILIILDNIWEDL------DLEKVGVPSGNDCRGCK--VLLTARDRHVL 295 (1053)
Q Consensus 227 ~~l~~~-~~~-~~~~~~~~~~l~~~l~~-~~~~LlvlDdv~~~~------~~~~l~~~~~~~~~gs~--iivTtR~~~v~ 295 (1053)
+++... .+. .....+....+.+.+.+ +++.+||||+++... .+..+...+. ...+++ +|.++.+..+.
T Consensus 108 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~-~~~~~~v~vI~i~~~~~~~ 186 (394)
T PRK00411 108 RQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHE-EYPGARIGVIGISSDLTFL 186 (394)
T ss_pred HHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhh-ccCCCeEEEEEEECCcchh
Confidence 998752 211 12233455666666643 456889999997642 2233322221 112333 66666655433
Q ss_pred Hh--------hCCCcccccCCCHHHHHHHHHHHhCCCC-CCccchHHHHHHHHHh----CCCchHHHHHHHHH--h---c
Q 037851 296 ES--------IGSKTLRIDVLNDEEAWTLFKKMTGDCA-EKGELKSIATDVAKEC----GGLPIAIVTLAKAL--R---N 357 (1053)
Q Consensus 296 ~~--------~~~~~~~l~~L~~~~~~~lf~~~~~~~~-~~~~~~~~~~~i~~~~----~GlPlai~~~~~~L--~---~ 357 (1053)
.. .+...+.+.+++.++..+++..++.... ...--+++.+.|++.+ |..+.|+.++-... . +
T Consensus 187 ~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~ 266 (394)
T PRK00411 187 YILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREG 266 (394)
T ss_pred hhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcC
Confidence 32 2235679999999999999988763211 1111123344444444 55677777664432 1 1
Q ss_pred C--CCHHHHHHHHHHhcCCCCCchhhhHHHhhhhHHhhhcccChhhhHHHHHhc-C-CCCC--CCchhHHHHHH--HHHh
Q 037851 358 K--TSVSTWKDALRQLKRPSHRNFEGVLAKTYSAIELSYKYLREEELKKLFLQC-S-LMGS--PQASTLNLLKY--AIGL 429 (1053)
Q Consensus 358 ~--~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~cfl~~-s-~fp~--~~~~~~~li~~--w~a~ 429 (1053)
. -+.+..+.+.+... .....-.+..||.+ +..|++. + .... ..+...++... .++.
T Consensus 267 ~~~I~~~~v~~a~~~~~--------------~~~~~~~~~~L~~~--~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~ 330 (394)
T PRK00411 267 SRKVTEEDVRKAYEKSE--------------IVHLSEVLRTLPLH--EKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCE 330 (394)
T ss_pred CCCcCHHHHHHHHHHHH--------------HHHHHHHHhcCCHH--HHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH
Confidence 1 14455555554331 12234467889974 4444432 2 1110 12333333321 1121
Q ss_pred ccccCccCHHHHHHHHHHHHHHHHhhccccc
Q 037851 430 GIVKGVGTVEEARDKVNTLVDQLRDACLLLD 460 (1053)
Q Consensus 430 g~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~ 460 (1053)
.+-.... ....+.++++.|...+++..
T Consensus 331 ~~~~~~~----~~~~~~~~l~~L~~~glI~~ 357 (394)
T PRK00411 331 ELGYEPR----THTRFYEYINKLDMLGIINT 357 (394)
T ss_pred HcCCCcC----cHHHHHHHHHHHHhcCCeEE
Confidence 1100000 12345567888888888753
No 22
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.15 E-value=1.7e-10 Score=137.88 Aligned_cols=244 Identities=21% Similarity=0.241 Sum_probs=137.7
Q ss_pred ceEEeeccCCCCCCCCCcccccCCCceeEEeecCccccCCCcccccCccCcEEEcCCcccCC-ccccCCCCCCcEEEccC
Q 037851 504 SRISLYDNNINSPLKIPDNIFIGTPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDGCELED-IRVIGELKDLEILSLQG 582 (1053)
Q Consensus 504 ~~l~l~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~-~~~i~~l~~L~~L~l~~ 582 (1053)
..+.+..+... .+|..+ .+.|+.|++++|.++.+|..+. .+|++|++++|.++. |..+. .+|+.|+|++
T Consensus 181 ~~L~L~~~~Lt---sLP~~I---p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 181 TELRLKILGLT---TIPACI---PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSI 250 (754)
T ss_pred eEEEeCCCCcC---cCCccc---ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcC
Confidence 34555443333 255443 2467788888888888877554 478888888887776 33332 4678888888
Q ss_pred CCCcccchhhhccCCCCeeeccCcccccccCcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCCeEE
Q 037851 583 SKIEQLPREIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLE 662 (1053)
Q Consensus 583 ~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~ 662 (1053)
|.+..+|..+. .+|++|++++ +.+..+|.. +. .+|+.|++++|.+.. .+..+. ++|+.|+
T Consensus 251 N~L~~LP~~l~--s~L~~L~Ls~-N~L~~LP~~-l~--~sL~~L~Ls~N~Lt~------------LP~~lp--~sL~~L~ 310 (754)
T PRK15370 251 NRITELPERLP--SALQSLDLFH-NKISCLPEN-LP--EELRYLSVYDNSIRT------------LPAHLP--SGITHLN 310 (754)
T ss_pred CccCcCChhHh--CCCCEEECcC-CccCccccc-cC--CCCcEEECCCCcccc------------Ccccch--hhHHHHH
Confidence 88888877664 4788888876 567666543 32 477888887776521 111111 2345555
Q ss_pred EEeccCCCCCCccccccCceEEEEEcccCCCCCcccccceeeeccCCccccccccccCccceeeccccCCcccccccccc
Q 037851 663 INILDAGILPSGFFSRKLKRYRIVVGFQWAPFDKYKTRRTLKLKLNSRICLEEWRGMKNVEYLRLDELPGLTNVLHDLDG 742 (1053)
Q Consensus 663 i~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~ 742 (1053)
++.+....+|.. ..++|+.|++.++.. +. ++.
T Consensus 311 Ls~N~Lt~LP~~-------------------------------------------l~~sL~~L~Ls~N~L-t~-LP~--- 342 (754)
T PRK15370 311 VQSNSLTALPET-------------------------------------------LPPGLKTLEAGENAL-TS-LPA--- 342 (754)
T ss_pred hcCCccccCCcc-------------------------------------------ccccceeccccCCcc-cc-CCh---
Confidence 554443333221 123555555555432 11 111
Q ss_pred cccccccEEEeecCCCceeecCCcccccCcCCccceeecccccccccccccccCccccCCccEEeEccCCCccccCCc--
Q 037851 743 EGFAELKHLNVKNNSNFLCIVDPLQVRCGAFPMLESLVLQNLINLERICHGQLRAESFCNLKTIKVGSCHKLKNLFSF-- 820 (1053)
Q Consensus 743 ~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~-- 820 (1053)
.-.++|+.|++++|. +..++. ...++|+.|+++++ ++..++.. ..+.|+.|++++| ++..+|..
T Consensus 343 ~l~~sL~~L~Ls~N~-L~~LP~------~lp~~L~~LdLs~N-~Lt~LP~~-----l~~sL~~LdLs~N-~L~~LP~sl~ 408 (754)
T PRK15370 343 SLPPELQVLDVSKNQ-ITVLPE------TLPPTITTLDVSRN-ALTNLPEN-----LPAALQIMQASRN-NLVRLPESLP 408 (754)
T ss_pred hhcCcccEEECCCCC-CCcCCh------hhcCCcCEEECCCC-cCCCCCHh-----HHHHHHHHhhccC-CcccCchhHH
Confidence 112567777777764 332221 12356777777774 45544321 1235777777775 46665431
Q ss_pred hhhhccCCccEEEecccch
Q 037851 821 SIAKFLPQLKTIEVTECKI 839 (1053)
Q Consensus 821 ~~~~~l~~L~~L~l~~c~~ 839 (1053)
.....++++..|.+.+|+.
T Consensus 409 ~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 409 HFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred HHhhcCCCccEEEeeCCCc
Confidence 1123357778888888764
No 23
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.13 E-value=4.7e-10 Score=133.07 Aligned_cols=234 Identities=23% Similarity=0.199 Sum_probs=156.3
Q ss_pred CcceEEeeccCCCCCCCCCcccccCCCceeEEeecCccccCCCcccccCccCcEEEcCCcccCCccccCCCCCCcEEEcc
Q 037851 502 KCSRISLYDNNINSPLKIPDNIFIGTPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDGCELEDIRVIGELKDLEILSLQ 581 (1053)
Q Consensus 502 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~~~~i~~l~~L~~L~l~ 581 (1053)
..+.+.+..|.... +|. ..++|++|++++|.++.+|.. ..+|+.|++++|.+..++. ...+|+.|+++
T Consensus 223 ~L~~L~L~~N~Lt~---LP~----lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~~Lp~--lp~~L~~L~Ls 290 (788)
T PRK15387 223 HITTLVIPDNNLTS---LPA----LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLTHLPA--LPSGLCKLWIF 290 (788)
T ss_pred CCCEEEccCCcCCC---CCC----CCCCCcEEEecCCccCcccCc---ccccceeeccCCchhhhhh--chhhcCEEECc
Confidence 46778887766554 554 357899999999999999863 4689999999999887443 23679999999
Q ss_pred CCCCcccchhhhccCCCCeeeccCcccccccCcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCCeE
Q 037851 582 GSKIEQLPREIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSL 661 (1053)
Q Consensus 582 ~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L 661 (1053)
+|.++.+|.. +++|++|++++ +.+..+|. . ..+|+.|++.+|.+.. +..+ ..+|+.|
T Consensus 291 ~N~Lt~LP~~---p~~L~~LdLS~-N~L~~Lp~-l---p~~L~~L~Ls~N~L~~-------------LP~l--p~~Lq~L 347 (788)
T PRK15387 291 GNQLTSLPVL---PPGLQELSVSD-NQLASLPA-L---PSELCKLWAYNNQLTS-------------LPTL--PSGLQEL 347 (788)
T ss_pred CCcccccccc---ccccceeECCC-CccccCCC-C---cccccccccccCcccc-------------cccc--ccccceE
Confidence 9999999963 57899999999 47777754 2 2467888888887621 1111 1478999
Q ss_pred EEEeccCCCCCCccccccCceEEEEEcccCCCCCcccccceeeeccCCccccccccccCccceeeccccCCccccccccc
Q 037851 662 EINILDAGILPSGFFSRKLKRYRIVVGFQWAPFDKYKTRRTLKLKLNSRICLEEWRGMKNVEYLRLDELPGLTNVLHDLD 741 (1053)
Q Consensus 662 ~i~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~ 741 (1053)
+++++....+|... .+|..| .+..+....+|. .+.+|+.|+++++.- .. ++.
T Consensus 348 dLS~N~Ls~LP~lp--~~L~~L--------------------~Ls~N~L~~LP~--l~~~L~~LdLs~N~L-t~-LP~-- 399 (788)
T PRK15387 348 SVSDNQLASLPTLP--SELYKL--------------------WAYNNRLTSLPA--LPSGLKELIVSGNRL-TS-LPV-- 399 (788)
T ss_pred ecCCCccCCCCCCC--ccccee--------------------hhhccccccCcc--cccccceEEecCCcc-cC-CCC--
Confidence 99988877766432 333333 233222222332 235678888877532 22 222
Q ss_pred ccccccccEEEeecCCCceeecCCcccccCcCCccceeecccccccccccccccCccccCCccEEeEccCC
Q 037851 742 GEGFAELKHLNVKNNSNFLCIVDPLQVRCGAFPMLESLVLQNLINLERICHGQLRAESFCNLKTIKVGSCH 812 (1053)
Q Consensus 742 ~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L~i~~c~ 812 (1053)
..++|+.|++++|. +..++ ..+.+|+.|++++ ++++.++.. ...+++|+.|++++++
T Consensus 400 --l~s~L~~LdLS~N~-LssIP-------~l~~~L~~L~Ls~-NqLt~LP~s---l~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 400 --LPSELKELMVSGNR-LTSLP-------MLPSGLLSLSVYR-NQLTRLPES---LIHLSSETTVNLEGNP 456 (788)
T ss_pred --cccCCCEEEccCCc-CCCCC-------cchhhhhhhhhcc-CcccccChH---HhhccCCCeEECCCCC
Confidence 23678888888875 33332 1234678888877 456665432 2467888899988875
No 24
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.13 E-value=6.5e-09 Score=112.09 Aligned_cols=180 Identities=16% Similarity=0.224 Sum_probs=115.5
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhCCCCCCCCChhHHHHHHHH--
Q 037851 171 DPDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLGMQFDEESDVPGRARKLYA-- 248 (1053)
Q Consensus 171 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-- 248 (1053)
..+..++.|+|++|+||||+++.+++..... .+ .++|+ +....+..+++..|+..++...... +.......+.+
T Consensus 40 ~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~-~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~~-~~~~~~~~l~~~l 115 (269)
T TIGR03015 40 SQREGFILITGEVGAGKTTLIRNLLKRLDQE-RV-VAAKL-VNTRVDAEDLLRMVAADFGLETEGR-DKAALLRELEDFL 115 (269)
T ss_pred hcCCCEEEEEcCCCCCHHHHHHHHHHhcCCC-Ce-EEeee-eCCCCCHHHHHHHHHHHcCCCCCCC-CHHHHHHHHHHHH
Confidence 3445689999999999999999999886532 11 12233 3334577889999999988764432 22222333332
Q ss_pred --HHhcCCcEEEEEcCCCCcc--chhhhcC---CCCCCCCCcEEEEEecChHHHHhh--------C---CCcccccCCCH
Q 037851 249 --RLQKENKILIILDNIWEDL--DLEKVGV---PSGNDCRGCKVLLTARDRHVLESI--------G---SKTLRIDVLND 310 (1053)
Q Consensus 249 --~l~~~~~~LlvlDdv~~~~--~~~~l~~---~~~~~~~gs~iivTtR~~~v~~~~--------~---~~~~~l~~L~~ 310 (1053)
....+++.+||+||++... .++.+.. .-........|++|.... ..... . ...+++.+++.
T Consensus 116 ~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~ 194 (269)
T TIGR03015 116 IEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDR 194 (269)
T ss_pred HHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCH
Confidence 2335788999999998753 3443321 111122223455555432 22111 1 34678999999
Q ss_pred HHHHHHHHHHhCCC---CCCccchHHHHHHHHHhCCCchHHHHHHHHH
Q 037851 311 EEAWTLFKKMTGDC---AEKGELKSIATDVAKECGGLPIAIVTLAKAL 355 (1053)
Q Consensus 311 ~~~~~lf~~~~~~~---~~~~~~~~~~~~i~~~~~GlPlai~~~~~~L 355 (1053)
+|..+++...+... ....-.++..+.|++.++|.|..|..++..+
T Consensus 195 ~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 195 EETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 99999998776421 1122335789999999999999999988886
No 25
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.13 E-value=1.5e-10 Score=122.29 Aligned_cols=192 Identities=20% Similarity=0.304 Sum_probs=105.8
Q ss_pred ccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHH---------
Q 037851 155 FESRMSTLKSLQNALLDPDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGEL--------- 225 (1053)
Q Consensus 155 ~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i--------- 225 (1053)
|+||++++++|.+++..+..+.+.|+|+.|+|||+|++.+.+.....+ + .++|+...+...... ...+
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~-~-~~~y~~~~~~~~~~~-~~~~~~~~~~~~~ 77 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEKG-Y-KVVYIDFLEESNESS-LRSFIEETSLADE 77 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT--E-E-CCCHHCCTTBSHHHH-HHHHHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhcC-C-cEEEEecccchhhhH-HHHHHHHHHHHHH
Confidence 689999999999998766678999999999999999999999874221 1 344444444332221 1221
Q ss_pred -HHHhCCCCC----------CCCChhHHHHHHHHHHhc-CCcEEEEEcCCCCcc-c----------hhhhcCCCCCCCCC
Q 037851 226 -ADQLGMQFD----------EESDVPGRARKLYARLQK-ENKILIILDNIWEDL-D----------LEKVGVPSGNDCRG 282 (1053)
Q Consensus 226 -~~~l~~~~~----------~~~~~~~~~~~l~~~l~~-~~~~LlvlDdv~~~~-~----------~~~l~~~~~~~~~g 282 (1053)
.+.+..... ...........+.+.+.+ +++++||+||+.... . +..+....... ..
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~ 156 (234)
T PF01637_consen 78 LSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQ-QN 156 (234)
T ss_dssp CHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-----TT
T ss_pred HHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhcccc-CC
Confidence 111211110 111222345556666653 456999999997655 1 11122222222 33
Q ss_pred cEEEEEecChHHHHh--------hC-CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCchHHHH
Q 037851 283 CKVLLTARDRHVLES--------IG-SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPIAIVT 350 (1053)
Q Consensus 283 s~iivTtR~~~v~~~--------~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~ 350 (1053)
..+|++.-...+... .+ ...+.+++|+.+++++++...+.....-+.-++..++|+..+||+|..|..
T Consensus 157 ~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 157 VSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-HHHHHH
T ss_pred ceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 345555555544433 22 345899999999999999987643311112345679999999999998864
No 26
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.09 E-value=5e-08 Score=110.30 Aligned_cols=290 Identities=17% Similarity=0.159 Sum_probs=164.0
Q ss_pred cccccchHHHHHHHHHHhc----CCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcC-CC---CeEEEEEEcCCcCHHHHHH
Q 037851 152 YEAFESRMSTLKSLQNALL----DPDVTITGVYGMGGLGKTTLVKEVARQVKKDK-HF---DEVVFAEVSDTPDIKKVQG 223 (1053)
Q Consensus 152 ~~~~~gR~~~~~~l~~~l~----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~f---~~~~wv~~s~~~~~~~~~~ 223 (1053)
++.++||++++++|..++. ......+.|+|++|+|||++++.+++...... .. -..+|+++....+...++.
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~ 93 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLV 93 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHH
Confidence 3478999999999998875 33456899999999999999999998865321 11 2467888887778889999
Q ss_pred HHHHHhC---CCCCCC-CChhHHHHHHHHHHh-cCCcEEEEEcCCCCcc-c----hhhhcCCC-CCCC--CCcEEEEEec
Q 037851 224 ELADQLG---MQFDEE-SDVPGRARKLYARLQ-KENKILIILDNIWEDL-D----LEKVGVPS-GNDC--RGCKVLLTAR 290 (1053)
Q Consensus 224 ~i~~~l~---~~~~~~-~~~~~~~~~l~~~l~-~~~~~LlvlDdv~~~~-~----~~~l~~~~-~~~~--~gs~iivTtR 290 (1053)
.|++++. ...+.. ....+....+.+.+. .+++++||||+++... . +..+.... .... ....+|.+|.
T Consensus 94 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n 173 (365)
T TIGR02928 94 ELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISN 173 (365)
T ss_pred HHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEEC
Confidence 9999983 322211 122234455555554 3567899999998662 1 22222110 1111 2334566665
Q ss_pred ChHHHHhh--------CCCcccccCCCHHHHHHHHHHHhCC----CCCCccchHHHHHHHHHhCCCchHH-HHHHHHH--
Q 037851 291 DRHVLESI--------GSKTLRIDVLNDEEAWTLFKKMTGD----CAEKGELKSIATDVAKECGGLPIAI-VTLAKAL-- 355 (1053)
Q Consensus 291 ~~~v~~~~--------~~~~~~l~~L~~~~~~~lf~~~~~~----~~~~~~~~~~~~~i~~~~~GlPlai-~~~~~~L-- 355 (1053)
.......+ ....+.+.+++.+|..+++..++.. ..-.++..+...+++....|.|..+ ..+-...
T Consensus 174 ~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~ 253 (365)
T TIGR02928 174 DLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEI 253 (365)
T ss_pred CcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 44432211 1346899999999999999988631 1112222334555677777888444 3332221
Q ss_pred h--c-C--CCHHHHHHHHHHhcCCCCCchhhhHHHhhhhHHhhhcccChhhhHHHHHhcCC-C--CCCCchhHHHHHHH-
Q 037851 356 R--N-K--TSVSTWKDALRQLKRPSHRNFEGVLAKTYSAIELSYKYLREEELKKLFLQCSL-M--GSPQASTLNLLKYA- 426 (1053)
Q Consensus 356 ~--~-~--~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~cfl~~s~-f--p~~~~~~~~li~~w- 426 (1053)
. . . -+.+..+.+.+.+. .....-++..||.+ .+..+..++. . ....+...++...+
T Consensus 254 a~~~~~~~it~~~v~~a~~~~~--------------~~~~~~~i~~l~~~-~~~~l~ai~~~~~~~~~~~~~~~~~~~y~ 318 (365)
T TIGR02928 254 AEREGAERVTEDHVEKAQEKIE--------------KDRLLELIRGLPTH-SKLVLLAIANLAANDEDPFRTGEVYEVYK 318 (365)
T ss_pred HHHcCCCCCCHHHHHHHHHHHH--------------HHHHHHHHHcCCHH-HHHHHHHHHHHHhcCCCCccHHHHHHHHH
Confidence 1 1 1 23444444444321 12233456788873 3433333221 1 11224445544422
Q ss_pred -HHhccccCccCHHHHHHHHHHHHHHHHhhccccc
Q 037851 427 -IGLGIVKGVGTVEEARDKVNTLVDQLRDACLLLD 460 (1053)
Q Consensus 427 -~a~g~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~ 460 (1053)
+++.+-... -....+.++++.|...+++..
T Consensus 319 ~~~~~~~~~~----~~~~~~~~~l~~l~~~gli~~ 349 (365)
T TIGR02928 319 EVCEDIGVDP----LTQRRISDLLNELDMLGLVEA 349 (365)
T ss_pred HHHHhcCCCC----CcHHHHHHHHHHHHhcCCeEE
Confidence 112110011 123455677888888888754
No 27
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.07 E-value=4.4e-10 Score=134.32 Aligned_cols=142 Identities=21% Similarity=0.333 Sum_probs=107.5
Q ss_pred CcceEEeeccCCCCCCCCCcccccCCCceeEEeecCccccCCCcccccCccCcEEEcCCcccCC-ccccCCCCCCcEEEc
Q 037851 502 KCSRISLYDNNINSPLKIPDNIFIGTPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDGCELED-IRVIGELKDLEILSL 580 (1053)
Q Consensus 502 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~-~~~i~~l~~L~~L~l 580 (1053)
..+.+.+.+|.+.. +|..++ .+|+.|++++|.++.+|..+. .+|+.|++++|.+.. |..+. .+|++|++
T Consensus 200 ~L~~L~Ls~N~Lts---LP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~L 269 (754)
T PRK15370 200 QITTLILDNNELKS---LPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPERLP--SALQSLDL 269 (754)
T ss_pred CCcEEEecCCCCCc---CChhhc---cCCCEEECCCCccccCChhhh--ccccEEECcCCccCcCChhHh--CCCCEEEC
Confidence 46778887776653 777654 589999999999999998654 479999999999887 44443 58999999
Q ss_pred cCCCCcccchhhhccCCCCeeeccCcccccccCcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCCe
Q 037851 581 QGSKIEQLPREIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTS 660 (1053)
Q Consensus 581 ~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~ 660 (1053)
++|.+..+|..+. .+|++|++++| .+..+|.. +. .+|+.|++++|.+.. .+..+ .++|+.
T Consensus 270 s~N~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~-lp--~sL~~L~Ls~N~Lt~------------LP~~l--~~sL~~ 329 (754)
T PRK15370 270 FHNKISCLPENLP--EELRYLSVYDN-SIRTLPAH-LP--SGITHLNVQSNSLTA------------LPETL--PPGLKT 329 (754)
T ss_pred cCCccCccccccC--CCCcEEECCCC-ccccCccc-ch--hhHHHHHhcCCcccc------------CCccc--ccccee
Confidence 9999999998765 58999999994 78877653 32 579999999987731 11111 257888
Q ss_pred EEEEeccCCCCCC
Q 037851 661 LEINILDAGILPS 673 (1053)
Q Consensus 661 L~i~~~~~~~~~~ 673 (1053)
|.++.+....+|.
T Consensus 330 L~Ls~N~Lt~LP~ 342 (754)
T PRK15370 330 LEAGENALTSLPA 342 (754)
T ss_pred ccccCCccccCCh
Confidence 8888776655554
No 28
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.05 E-value=3.9e-09 Score=115.90 Aligned_cols=274 Identities=16% Similarity=0.121 Sum_probs=148.9
Q ss_pred ccccchHHHHHHHHHHhc-----CCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHH
Q 037851 153 EAFESRMSTLKSLQNALL-----DPDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELAD 227 (1053)
Q Consensus 153 ~~~~gR~~~~~~l~~~l~-----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 227 (1053)
.+|+|++..++++..++. ......+.++|++|+|||+||+.+++..... + ..+..+.......+ ...+.
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~--~---~~~~~~~~~~~~~l-~~~l~ 77 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVN--L---KITSGPALEKPGDL-AAILT 77 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCC--E---EEeccchhcCchhH-HHHHH
Confidence 578999999999888875 2345678899999999999999999987521 1 12222211122222 22233
Q ss_pred HhCCCC----CCCCCh-hHHHHHHHHHHhcCCcEEEEEcCCCCccchhhhcCCCCCCCCCcEEEEEecChHHHHhhC---
Q 037851 228 QLGMQF----DEESDV-PGRARKLYARLQKENKILIILDNIWEDLDLEKVGVPSGNDCRGCKVLLTARDRHVLESIG--- 299 (1053)
Q Consensus 228 ~l~~~~----~~~~~~-~~~~~~l~~~l~~~~~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~~~~--- 299 (1053)
.++... ++.... ......+...+ .+.+..+|+|+..+...+... .+ +.+-|..||+...+.....
T Consensus 78 ~~~~~~vl~iDEi~~l~~~~~e~l~~~~-~~~~~~~v~~~~~~~~~~~~~---~~---~~~li~~t~~~~~l~~~l~sR~ 150 (305)
T TIGR00635 78 NLEEGDVLFIDEIHRLSPAVEELLYPAM-EDFRLDIVIGKGPSARSVRLD---LP---PFTLVGATTRAGMLTSPLRDRF 150 (305)
T ss_pred hcccCCEEEEehHhhhCHHHHHHhhHHH-hhhheeeeeccCccccceeec---CC---CeEEEEecCCccccCHHHHhhc
Confidence 332211 000000 11222333333 345566777776555444321 11 2455667777654433221
Q ss_pred CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCchHHHHHHHHHhcCCCHHHHHHHHHHhcCCCCCch
Q 037851 300 SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPIAIVTLAKALRNKTSVSTWKDALRQLKRPSHRNF 379 (1053)
Q Consensus 300 ~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~L~~~~~~~~w~~~l~~l~~~~~~~~ 379 (1053)
...+++++++.++..+++.+.+..... .--++....|++.|+|.|-.+..++..+ |..+.. .......
T Consensus 151 ~~~~~l~~l~~~e~~~il~~~~~~~~~-~~~~~al~~ia~~~~G~pR~~~~ll~~~--------~~~a~~-~~~~~it-- 218 (305)
T TIGR00635 151 GIILRLEFYTVEELAEIVSRSAGLLNV-EIEPEAALEIARRSRGTPRIANRLLRRV--------RDFAQV-RGQKIIN-- 218 (305)
T ss_pred ceEEEeCCCCHHHHHHHHHHHHHHhCC-CcCHHHHHHHHHHhCCCcchHHHHHHHH--------HHHHHH-cCCCCcC--
Confidence 356799999999999999988863221 2224667899999999997665554432 211100 0000000
Q ss_pred hhhHHHhhhhHHhhhcccChhhhHHHHH-hcCCCCCCCchhHHHHHHHHHhccccCccCHHHHHHHHHHHHH-HHHhhcc
Q 037851 380 EGVLAKTYSAIELSYKYLREEELKKLFL-QCSLMGSPQASTLNLLKYAIGLGIVKGVGTVEEARDKVNTLVD-QLRDACL 457 (1053)
Q Consensus 380 ~~~~~~~~~~l~~sy~~L~~~~lk~cfl-~~s~fp~~~~~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~~~-~L~~~~l 457 (1053)
..........+...|..+++. -+..+. ..+.++...+..+++.... |. .... ....++ .|++.+|
T Consensus 219 ~~~v~~~l~~l~~~~~~l~~~-~~~~L~al~~~~~~~~~~~~~ia~~l---g~-----~~~~----~~~~~e~~Li~~~l 285 (305)
T TIGR00635 219 RDIALKALEMLMIDELGLDEI-DRKLLSVLIEQFQGGPVGLKTLAAAL---GE-----DADT----IEDVYEPYLLQIGF 285 (305)
T ss_pred HHHHHHHHHHhCCCCCCCCHH-HHHHHHHHHHHhCCCcccHHHHHHHh---CC-----Ccch----HHHhhhHHHHHcCC
Confidence 122233333466778888874 344444 5566653335544443322 11 1112 223456 5888999
Q ss_pred cccCCCC
Q 037851 458 LLDGTND 464 (1053)
Q Consensus 458 ~~~~~~~ 464 (1053)
+.....+
T Consensus 286 i~~~~~g 292 (305)
T TIGR00635 286 LQRTPRG 292 (305)
T ss_pred cccCCch
Confidence 8755444
No 29
>PF05729 NACHT: NACHT domain
Probab=99.02 E-value=1.9e-09 Score=106.86 Aligned_cols=141 Identities=23% Similarity=0.316 Sum_probs=92.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhcCC----CCeEEEEEEcCCcCHH---HHHHHHHHHhCCCCCCCCChhHHHHHHH
Q 037851 175 TITGVYGMGGLGKTTLVKEVARQVKKDKH----FDEVVFAEVSDTPDIK---KVQGELADQLGMQFDEESDVPGRARKLY 247 (1053)
Q Consensus 175 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----f~~~~wv~~s~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 247 (1053)
+++.|+|.+|+||||+++.++.+...... +...+|++.+...... .+...|..+....... ....+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~------~~~~~~ 74 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAP------IEELLQ 74 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhh------hHHHHH
Confidence 58999999999999999999998876544 3456677776554332 3444444443321111 111223
Q ss_pred HHHhcCCcEEEEEcCCCCccc---------hhhhcCCCCC--CCCCcEEEEEecChHHHHh---hC-CCcccccCCCHHH
Q 037851 248 ARLQKENKILIILDNIWEDLD---------LEKVGVPSGN--DCRGCKVLLTARDRHVLES---IG-SKTLRIDVLNDEE 312 (1053)
Q Consensus 248 ~~l~~~~~~LlvlDdv~~~~~---------~~~l~~~~~~--~~~gs~iivTtR~~~v~~~---~~-~~~~~l~~L~~~~ 312 (1053)
......++++||+|++++... +..+...+.. ..++.+++||+|....... .. ...+++.+|++++
T Consensus 75 ~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 75 ELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEED 154 (166)
T ss_pred HHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHH
Confidence 333468899999999976532 1222221222 2468999999999877332 33 4578999999999
Q ss_pred HHHHHHHHh
Q 037851 313 AWTLFKKMT 321 (1053)
Q Consensus 313 ~~~lf~~~~ 321 (1053)
..+++.+..
T Consensus 155 ~~~~~~~~f 163 (166)
T PF05729_consen 155 IKQYLRKYF 163 (166)
T ss_pred HHHHHHHHh
Confidence 999998775
No 30
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.02 E-value=5.5e-09 Score=115.24 Aligned_cols=276 Identities=14% Similarity=0.112 Sum_probs=148.5
Q ss_pred CcccccchHHHHHHHHHHhc-----CCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHH
Q 037851 151 GYEAFESRMSTLKSLQNALL-----DPDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGEL 225 (1053)
Q Consensus 151 ~~~~~~gR~~~~~~l~~~l~-----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 225 (1053)
....|+||++.++.+..++. ....+.+.|+|++|+||||+|+.+++..... + .++..+. ......+..+
T Consensus 23 ~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~--~---~~~~~~~-~~~~~~l~~~ 96 (328)
T PRK00080 23 SLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVN--I---RITSGPA-LEKPGDLAAI 96 (328)
T ss_pred CHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCC--e---EEEeccc-ccChHHHHHH
Confidence 45679999999998877664 2335678899999999999999999987531 1 1222211 1111222333
Q ss_pred HHHhCCCC----CCCCCh-hHHHHHHHHHHhcCCcEEEEEcCCCCccchhhhcCCCCCCCCCcEEEEEecChHHHHhhC-
Q 037851 226 ADQLGMQF----DEESDV-PGRARKLYARLQKENKILIILDNIWEDLDLEKVGVPSGNDCRGCKVLLTARDRHVLESIG- 299 (1053)
Q Consensus 226 ~~~l~~~~----~~~~~~-~~~~~~l~~~l~~~~~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~~~~- 299 (1053)
+..++... ++.... ......+...+ .+.+..+|+|+..+...+.. .++ +.+-|..|||...+.....
T Consensus 97 l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~-e~~~~~~~l~~~~~~~~~~~---~l~---~~~li~at~~~~~l~~~L~s 169 (328)
T PRK00080 97 LTNLEEGDVLFIDEIHRLSPVVEEILYPAM-EDFRLDIMIGKGPAARSIRL---DLP---PFTLIGATTRAGLLTSPLRD 169 (328)
T ss_pred HHhcccCCEEEEecHhhcchHHHHHHHHHH-HhcceeeeeccCccccceee---cCC---CceEEeecCCcccCCHHHHH
Confidence 33332211 000000 01112222333 24455556665544332211 111 2345667777554333221
Q ss_pred --CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCchHHHHHHHHHhcCCCHHHHHHHHHHhcCCCCC
Q 037851 300 --SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPIAIVTLAKALRNKTSVSTWKDALRQLKRPSHR 377 (1053)
Q Consensus 300 --~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~L~~~~~~~~w~~~l~~l~~~~~~ 377 (1053)
...+++++++.++..+++.+.+.... ..--++....|++.|+|.|-.+..+...+. .|.... ......
T Consensus 170 Rf~~~~~l~~~~~~e~~~il~~~~~~~~-~~~~~~~~~~ia~~~~G~pR~a~~~l~~~~------~~a~~~---~~~~I~ 239 (328)
T PRK00080 170 RFGIVQRLEFYTVEELEKIVKRSARILG-VEIDEEGALEIARRSRGTPRIANRLLRRVR------DFAQVK---GDGVIT 239 (328)
T ss_pred hcCeeeecCCCCHHHHHHHHHHHHHHcC-CCcCHHHHHHHHHHcCCCchHHHHHHHHHH------HHHHHc---CCCCCC
Confidence 35689999999999999998886322 122346789999999999965544444321 121111 001000
Q ss_pred chhhhHHHhhhhHHhhhcccChhhhHHHHH-hcCCCCCCCchhHHHHHHHHHhccccCccCHHHHHHHHHHHHH-HHHhh
Q 037851 378 NFEGVLAKTYSAIELSYKYLREEELKKLFL-QCSLMGSPQASTLNLLKYAIGLGIVKGVGTVEEARDKVNTLVD-QLRDA 455 (1053)
Q Consensus 378 ~~~~~~~~~~~~l~~sy~~L~~~~lk~cfl-~~s~fp~~~~~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~~~-~L~~~ 455 (1053)
..........+...|..|++. .+..+. ....|+...+..+.+.... | .....++ +.++ .|++.
T Consensus 240 --~~~v~~~l~~~~~~~~~l~~~-~~~~l~~~~~~~~~~~~~~~~~a~~l---g-----~~~~~~~----~~~e~~Li~~ 304 (328)
T PRK00080 240 --KEIADKALDMLGVDELGLDEM-DRKYLRTIIEKFGGGPVGLDTLAAAL---G-----EERDTIE----DVYEPYLIQQ 304 (328)
T ss_pred --HHHHHHHHHHhCCCcCCCCHH-HHHHHHHHHHHcCCCceeHHHHHHHH---C-----CCcchHH----HHhhHHHHHc
Confidence 123344556667778888874 455553 6666763445555553322 1 1112232 2344 67778
Q ss_pred cccccCCCC
Q 037851 456 CLLLDGTND 464 (1053)
Q Consensus 456 ~l~~~~~~~ 464 (1053)
+|++....+
T Consensus 305 ~li~~~~~g 313 (328)
T PRK00080 305 GFIQRTPRG 313 (328)
T ss_pred CCcccCCch
Confidence 888755433
No 31
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.01 E-value=7.6e-11 Score=122.15 Aligned_cols=100 Identities=26% Similarity=0.370 Sum_probs=50.5
Q ss_pred eEEeecCccccCCCc-ccccCccCcEEEcCCcccCC--ccccCCCCCCcEEEccC-CCCcccchh-hhccCCCCeeeccC
Q 037851 531 KVLDFTRMRLLSLPS-SIHLLTDLRTLCLDGCELED--IRVIGELKDLEILSLQG-SKIEQLPRE-IGQLTQLKLLDLSN 605 (1053)
Q Consensus 531 r~L~l~~~~~~~lp~-~i~~l~~Lr~L~L~~~~~~~--~~~i~~l~~L~~L~l~~-~~l~~lp~~-i~~L~~L~~L~l~~ 605 (1053)
..++|..|.|+.+|+ +|+.+++||.|||++|.|+. |..|.+|..|-.|-+.+ |+|+.+|+. ++.|..|+.|.+..
T Consensus 70 veirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNa 149 (498)
T KOG4237|consen 70 VEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNA 149 (498)
T ss_pred eEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcCh
Confidence 455666666666655 45555556665555555544 34455555544444433 445555532 34455555554444
Q ss_pred cccccccCcchhcCCccCceeecccc
Q 037851 606 CSKLKVIAPNVLSNLSQLEELYMANC 631 (1053)
Q Consensus 606 ~~~l~~~~~~~l~~l~~L~~L~l~~~ 631 (1053)
+.+..++...+..|++|..|.+..|
T Consensus 150 -n~i~Cir~~al~dL~~l~lLslyDn 174 (498)
T KOG4237|consen 150 -NHINCIRQDALRDLPSLSLLSLYDN 174 (498)
T ss_pred -hhhcchhHHHHHHhhhcchhcccch
Confidence 2334444444444444444444444
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.86 E-value=2e-09 Score=104.29 Aligned_cols=129 Identities=23% Similarity=0.330 Sum_probs=52.8
Q ss_pred CCCceeEEeecCccccCCCcccc-cCccCcEEEcCCcccCCccccCCCCCCcEEEccCCCCcccchhh-hccCCCCeeec
Q 037851 526 GTPKLKVLDFTRMRLLSLPSSIH-LLTDLRTLCLDGCELEDIRVIGELKDLEILSLQGSKIEQLPREI-GQLTQLKLLDL 603 (1053)
Q Consensus 526 ~~~~Lr~L~l~~~~~~~lp~~i~-~l~~Lr~L~L~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i-~~L~~L~~L~l 603 (1053)
+...+|.|+++++.++.+.. ++ .+.+|+.|++++|.++.++.+..+++|++|++++|.|+.++..+ ..+++|++|++
T Consensus 17 n~~~~~~L~L~~n~I~~Ie~-L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIEN-LGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp -------------------S---TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred cccccccccccccccccccc-hhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence 45578999999999987743 55 68899999999999999889999999999999999999997666 46899999999
Q ss_pred cCcccccccCc-chhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCCeEEEE
Q 037851 604 SNCSKLKVIAP-NVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLEIN 664 (1053)
Q Consensus 604 ~~~~~l~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~ 664 (1053)
++ +.+..+.. ..+..+++|+.|++.+|++. ........-+..+++|+.|+-.
T Consensus 96 ~~-N~I~~l~~l~~L~~l~~L~~L~L~~NPv~--------~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 96 SN-NKISDLNELEPLSSLPKLRVLSLEGNPVC--------EKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp TT-S---SCCCCGGGGG-TT--EEE-TT-GGG--------GSTTHHHHHHHH-TT-SEETTE
T ss_pred cC-CcCCChHHhHHHHcCCCcceeeccCCccc--------chhhHHHHHHHHcChhheeCCE
Confidence 98 45554421 33678899999999999872 1122334456678888877543
No 33
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.83 E-value=1.2e-07 Score=115.93 Aligned_cols=304 Identities=18% Similarity=0.201 Sum_probs=177.4
Q ss_pred ccchHHHHHHHHHHhc---CCCeeEEEEEcCCCCcHHHHHHHHHHHhhhc-CCCCeEEEEEEcCCcC---HHHHHHHHHH
Q 037851 155 FESRMSTLKSLQNALL---DPDVTITGVYGMGGLGKTTLVKEVARQVKKD-KHFDEVVFAEVSDTPD---IKKVQGELAD 227 (1053)
Q Consensus 155 ~~gR~~~~~~l~~~l~---~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~wv~~s~~~~---~~~~~~~i~~ 227 (1053)
++||+.+++.|...+. .+...++.+.|..|+|||+++++|......+ +.|-.-.+-....... ..+.+++++.
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~~ 81 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLMG 81 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHHH
Confidence 6899999999998886 4567899999999999999999999987643 1111111111112211 2222233332
Q ss_pred Hh-------------------CCCCCC--------------C--------CChhH-----HHHHHHHHHhcCCcEEEEEc
Q 037851 228 QL-------------------GMQFDE--------------E--------SDVPG-----RARKLYARLQKENKILIILD 261 (1053)
Q Consensus 228 ~l-------------------~~~~~~--------------~--------~~~~~-----~~~~l~~~l~~~~~~LlvlD 261 (1053)
++ +..... . ..... ....+.....+.++.++|+|
T Consensus 82 ~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~le 161 (849)
T COG3899 82 QLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVLE 161 (849)
T ss_pred HHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEEe
Confidence 22 211100 0 00000 11222233335679999999
Q ss_pred CC-CCccc-h---hhhcCCCCC-C--CCCcEEEEEecCh-HHHH-hhC-CCcccccCCCHHHHHHHHHHHhCCCCCCccc
Q 037851 262 NI-WEDLD-L---EKVGVPSGN-D--CRGCKVLLTARDR-HVLE-SIG-SKTLRIDVLNDEEAWTLFKKMTGDCAEKGEL 330 (1053)
Q Consensus 262 dv-~~~~~-~---~~l~~~~~~-~--~~gs~iivTtR~~-~v~~-~~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~ 330 (1053)
|+ |-+.. + +.+...... . .+-.-.+.|.+.. .... ... ...|.+.||+..+...+.....+.... ..
T Consensus 162 DlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~--~~ 239 (849)
T COG3899 162 DLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKL--LP 239 (849)
T ss_pred cccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCccc--cc
Confidence 99 43321 1 111111100 0 0011223333333 1111 122 578999999999999999998875322 22
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHhcC------CCHHHHHHHHHHhcCCCCCchhhhHHHhhhhHHhhhcccChhhhHH
Q 037851 331 KSIATDVAKECGGLPIAIVTLAKALRNK------TSVSTWKDALRQLKRPSHRNFEGVLAKTYSAIELSYKYLREEELKK 404 (1053)
Q Consensus 331 ~~~~~~i~~~~~GlPlai~~~~~~L~~~------~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~ 404 (1053)
.+....|+++.+|+|+-+..+-..+... .+...|..-..++..- +..+.+...+..-.+.||+ ..++
T Consensus 240 ~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~------~~~~~vv~~l~~rl~kL~~-~t~~ 312 (849)
T COG3899 240 APLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGIL------ATTDAVVEFLAARLQKLPG-TTRE 312 (849)
T ss_pred chHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCc------hhhHHHHHHHHHHHhcCCH-HHHH
Confidence 4668999999999999999999988764 3555565444333221 2334466778889999998 5799
Q ss_pred HHHhcCCCCCCCchhHHHHHHHHHhccccCccCHHHHHHHHHHHHHHHHhhccccc-----C--CCCe--E-EehHHHHH
Q 037851 405 LFLQCSLMGSPQASTLNLLKYAIGLGIVKGVGTVEEARDKVNTLVDQLRDACLLLD-----G--TNDC--F-SMHDVVRD 474 (1053)
Q Consensus 405 cfl~~s~fp~~~~~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~-----~--~~~~--~-~mHdlv~~ 474 (1053)
.+-..|++. ..|+...|...|... ....+.++.+.|....++.. . .... | ..||.|++
T Consensus 313 Vl~~AA~iG-~~F~l~~La~l~~~~-----------~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqq 380 (849)
T COG3899 313 VLKAAACIG-NRFDLDTLAALAEDS-----------PALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQ 380 (849)
T ss_pred HHHHHHHhC-ccCCHHHHHHHHhhc-----------hHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHH
Confidence 999999998 888888777766321 11222334444444443321 1 1111 2 46999998
Q ss_pred HHHHH
Q 037851 475 VAISI 479 (1053)
Q Consensus 475 ~a~~~ 479 (1053)
.|...
T Consensus 381 aaY~~ 385 (849)
T COG3899 381 AAYNL 385 (849)
T ss_pred HHhcc
Confidence 88654
No 34
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.82 E-value=1.2e-10 Score=120.74 Aligned_cols=127 Identities=27% Similarity=0.438 Sum_probs=107.4
Q ss_pred cceEEeeccCCCCCCCCCcccccCCCceeEEeecCccccCC-CcccccCccCcEEEcCC-cccCCc--cccCCCCCCcEE
Q 037851 503 CSRISLYDNNINSPLKIPDNIFIGTPKLKVLDFTRMRLLSL-PSSIHLLTDLRTLCLDG-CELEDI--RVIGELKDLEIL 578 (1053)
Q Consensus 503 ~~~l~l~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~l-p~~i~~l~~Lr~L~L~~-~~~~~~--~~i~~l~~L~~L 578 (1053)
...+.+..|.+.. +|+..|+.+++||.||||+|.|+.+ |..|..+..|-.|-+.+ |+|+++ ..|++|..|+-|
T Consensus 69 tveirLdqN~I~~---iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 69 TVEIRLDQNQISS---IPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL 145 (498)
T ss_pred ceEEEeccCCccc---CChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence 4455565666654 9999999999999999999999977 78899999988887777 789884 679999999999
Q ss_pred EccCCCCcccc-hhhhccCCCCeeeccCcccccccCcchhcCCccCceeecccccc
Q 037851 579 SLQGSKIEQLP-REIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSI 633 (1053)
Q Consensus 579 ~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 633 (1053)
.+.-|.+.-++ ..+..|++|..|.+.. +.+..++...+..+..++++.+..|.+
T Consensus 146 llNan~i~Cir~~al~dL~~l~lLslyD-n~~q~i~~~tf~~l~~i~tlhlA~np~ 200 (498)
T KOG4237|consen 146 LLNANHINCIRQDALRDLPSLSLLSLYD-NKIQSICKGTFQGLAAIKTLHLAQNPF 200 (498)
T ss_pred hcChhhhcchhHHHHHHhhhcchhcccc-hhhhhhccccccchhccchHhhhcCcc
Confidence 99999998665 5679999999999998 678888877889999999998876653
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.78 E-value=3.8e-09 Score=102.39 Aligned_cols=121 Identities=30% Similarity=0.437 Sum_probs=45.7
Q ss_pred CccccCCCcccccCccCcEEEcCCcccCCccccC-CCCCCcEEEccCCCCcccchhhhccCCCCeeeccCcccccccCcc
Q 037851 537 RMRLLSLPSSIHLLTDLRTLCLDGCELEDIRVIG-ELKDLEILSLQGSKIEQLPREIGQLTQLKLLDLSNCSKLKVIAPN 615 (1053)
Q Consensus 537 ~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~~~~i~-~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~ 615 (1053)
.+.+...|. +.+...++.|+|++|.++.++.++ .+.+|+.|++++|.|+.++ .+..|++|++|++++ +.++.+.+.
T Consensus 6 ~~~i~~~~~-~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~-N~I~~i~~~ 82 (175)
T PF14580_consen 6 ANMIEQIAQ-YNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSN-NRISSISEG 82 (175)
T ss_dssp -------------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--S-S---S-CHH
T ss_pred ccccccccc-cccccccccccccccccccccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCC-CCCCccccc
Confidence 344444444 456667999999999999998888 6899999999999999987 688999999999999 688888554
Q ss_pred hhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCCeEEEEeccCCC
Q 037851 616 VLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLEINILDAGI 670 (1053)
Q Consensus 616 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~ 670 (1053)
....+++|++|++++|.+. ....+..|+.+++|+.|++.++....
T Consensus 83 l~~~lp~L~~L~L~~N~I~----------~l~~l~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 83 LDKNLPNLQELYLSNNKIS----------DLNELEPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp HHHH-TT--EEE-TTS-------------SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred hHHhCCcCCEEECcCCcCC----------ChHHhHHHHcCCCcceeeccCCcccc
Confidence 2346999999999999873 34557888899999999998876543
No 36
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.73 E-value=5e-10 Score=117.31 Aligned_cols=149 Identities=14% Similarity=0.233 Sum_probs=92.0
Q ss_pred cCCccEEeEccCCCccccCCchhhhccCCccEEEecccchhhhHhhcCcccccccccccccceEecCCCccccccccccc
Q 037851 800 FCNLKTIKVGSCHKLKNLFSFSIAKFLPQLKTIEVTECKIVEEIFVSSNEEAIGEIALAQVRSLILRTLPLLASFSAFVK 879 (1053)
Q Consensus 800 ~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~si~~~~~ 879 (1053)
+..|+.|..++|..+...+-....++.++|+.|.+..|..+......... ...+.|+.+.+.+|.....-
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~-----rn~~~Le~l~~e~~~~~~d~----- 362 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLG-----RNCPHLERLDLEECGLITDG----- 362 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhh-----cCChhhhhhcccccceehhh-----
Confidence 45677777777776665544445567777888888777765544332211 13566777776666433221
Q ss_pred ccccccchhhhhHhhhccccCCCCccccccccccccceEeeccc-ccceeccCCccccccccCCcccEEEEecCcccccc
Q 037851 880 TTSTVEAKHNEIILENESQLHTPSSLFNVKLVLPNLEVLEVRDL-NVAKIWHNQFSAAMSCNVQNLTRLVVLDCHKLRYV 958 (1053)
Q Consensus 880 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l 958 (1053)
.+......+|.|+.|.+++| .+++...-.+ .........|..|.+.+|+.+++.
T Consensus 363 ------------------------tL~sls~~C~~lr~lslshce~itD~gi~~l-~~~~c~~~~l~~lEL~n~p~i~d~ 417 (483)
T KOG4341|consen 363 ------------------------TLASLSRNCPRLRVLSLSHCELITDEGIRHL-SSSSCSLEGLEVLELDNCPLITDA 417 (483)
T ss_pred ------------------------hHhhhccCCchhccCChhhhhhhhhhhhhhh-hhccccccccceeeecCCCCchHH
Confidence 00111122888999999988 3443211111 112245677999999999988775
Q ss_pred ccchhHhhhccCcEEEEeccccccee
Q 037851 959 FSYSTAKRLGQLKHLVISRCPLLEEI 984 (1053)
Q Consensus 959 ~~~~~l~~l~sL~~L~i~~c~~l~~i 984 (1053)
....+..+++||.+++.+|..+++-
T Consensus 418 -~Le~l~~c~~Leri~l~~~q~vtk~ 442 (483)
T KOG4341|consen 418 -TLEHLSICRNLERIELIDCQDVTKE 442 (483)
T ss_pred -HHHHHhhCcccceeeeechhhhhhh
Confidence 3346678889999999999876644
No 37
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.69 E-value=3.9e-10 Score=118.09 Aligned_cols=121 Identities=23% Similarity=0.344 Sum_probs=78.9
Q ss_pred ccccccceEeecccc-cceeccCCccccccccCCcccEEEEecCccccccccchhHhhhccCcEEEEecccccceeeccc
Q 037851 910 LVLPNLEVLEVRDLN-VAKIWHNQFSAAMSCNVQNLTRLVVLDCHKLRYVFSYSTAKRLGQLKHLVISRCPLLEEIVGKE 988 (1053)
Q Consensus 910 ~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~l~~l~sL~~L~i~~c~~l~~i~~~~ 988 (1053)
..+++|+.|.+++|. +.+. .|. ....+...|+.|.+.+|....+........+++.|+.|.+++|..+++-
T Consensus 317 ~~~~~L~~l~l~~c~~fsd~---~ft-~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~---- 388 (483)
T KOG4341|consen 317 QHCHNLQVLELSGCQQFSDR---GFT-MLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDE---- 388 (483)
T ss_pred cCCCceEEEeccccchhhhh---hhh-hhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhh----
Confidence 337889999998883 3221 111 1224678899999999886655433334467899999999999877644
Q ss_pred CccccC--CcccccccCccccccccccccccCCCCccCCCCcceEEEecCCCCc
Q 037851 989 GGVEAD--PSFVFPQLTILKLSSLPELRAFYPGIHTLECPILTKLEVSFCHKLE 1040 (1053)
Q Consensus 989 ~~~~~~--~~~~~p~L~~L~l~~c~~L~~l~~~~~~~~~~sL~~L~I~~Cp~L~ 1040 (1053)
|.... .......|..|.+++||.++.--.. +...|++|+.+++.+|....
T Consensus 389 -gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le-~l~~c~~Leri~l~~~q~vt 440 (483)
T KOG4341|consen 389 -GIRHLSSSSCSLEGLEVLELDNCPLITDATLE-HLSICRNLERIELIDCQDVT 440 (483)
T ss_pred -hhhhhhhccccccccceeeecCCCCchHHHHH-HHhhCcccceeeeechhhhh
Confidence 11111 1233567889999999987642211 22357899999998876654
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.69 E-value=2.1e-09 Score=107.32 Aligned_cols=135 Identities=22% Similarity=0.290 Sum_probs=114.5
Q ss_pred CCCceeEEeecCccccCCCcccccCccCcEEEcCCcccCCccccCCCCCCcEEEccCCCCcccchhhhccCCCCeeeccC
Q 037851 526 GTPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDGCELEDIRVIGELKDLEILSLQGSKIEQLPREIGQLTQLKLLDLSN 605 (1053)
Q Consensus 526 ~~~~Lr~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~ 605 (1053)
..+.|..||+|+|.++.+..++.-++.+|.|++++|.+..+.++..|++|+.|||++|.+.++-..-.+|-|.++|.|++
T Consensus 282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ 361 (490)
T ss_pred hHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh
Confidence 35678999999999999999999999999999999999988889999999999999999988876668899999999999
Q ss_pred cccccccCcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCCeEEEEeccCCCCCC
Q 037851 606 CSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLEINILDAGILPS 673 (1053)
Q Consensus 606 ~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~ 673 (1053)
+.+..+ .++++|.+|..|++.+|.+. ....+..+++++-|..|.+.++....++.
T Consensus 362 -N~iE~L--SGL~KLYSLvnLDl~~N~Ie----------~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 362 -NKIETL--SGLRKLYSLVNLDLSSNQIE----------ELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred -hhHhhh--hhhHhhhhheeccccccchh----------hHHHhcccccccHHHHHhhcCCCccccch
Confidence 567766 34899999999999999873 33456677888888888888877655543
No 39
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.68 E-value=3.8e-09 Score=117.39 Aligned_cols=110 Identities=23% Similarity=0.241 Sum_probs=62.4
Q ss_pred cccCCCceeEEeecCcccc-----CCCcccccCccCcEEEcCCcccCC--------ccccCCCCCCcEEEccCCCCc-cc
Q 037851 523 IFIGTPKLKVLDFTRMRLL-----SLPSSIHLLTDLRTLCLDGCELED--------IRVIGELKDLEILSLQGSKIE-QL 588 (1053)
Q Consensus 523 ~~~~~~~Lr~L~l~~~~~~-----~lp~~i~~l~~Lr~L~L~~~~~~~--------~~~i~~l~~L~~L~l~~~~l~-~l 588 (1053)
+|..+..|+.|+++++.+. .++..+...++|++|+++++.+.. +..+..+++|++|++++|.+. ..
T Consensus 18 ~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 97 (319)
T cd00116 18 LLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDG 97 (319)
T ss_pred HHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhH
Confidence 3455666777777777763 345556666667777777766542 134555667777777666655 34
Q ss_pred chhhhccCC---CCeeeccCccccccc----CcchhcCC-ccCceeecccccc
Q 037851 589 PREIGQLTQ---LKLLDLSNCSKLKVI----APNVLSNL-SQLEELYMANCSI 633 (1053)
Q Consensus 589 p~~i~~L~~---L~~L~l~~~~~l~~~----~~~~l~~l-~~L~~L~l~~~~~ 633 (1053)
+..+..+.+ |++|++++|. +... ....+..+ ++|++|++++|.+
T Consensus 98 ~~~~~~l~~~~~L~~L~ls~~~-~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l 149 (319)
T cd00116 98 CGVLESLLRSSSLQELKLNNNG-LGDRGLRLLAKGLKDLPPALEKLVLGRNRL 149 (319)
T ss_pred HHHHHHHhccCcccEEEeeCCc-cchHHHHHHHHHHHhCCCCceEEEcCCCcC
Confidence 444444444 6666666642 3210 01123444 5666666666655
No 40
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.68 E-value=6.5e-07 Score=103.89 Aligned_cols=202 Identities=18% Similarity=0.155 Sum_probs=122.7
Q ss_pred ccccchHHHHHHHHHHhc----CCC-eeEEEEEcCCCCcHHHHHHHHHHHhhhc---CCCC--eEEEEEEcCCcCHHHHH
Q 037851 153 EAFESRMSTLKSLQNALL----DPD-VTITGVYGMGGLGKTTLVKEVARQVKKD---KHFD--EVVFAEVSDTPDIKKVQ 222 (1053)
Q Consensus 153 ~~~~gR~~~~~~l~~~l~----~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~~f~--~~~wv~~s~~~~~~~~~ 222 (1053)
+.+.||++++++|...|. ... ..++.|+|++|.|||+.++.|.+..... .... .+++|++..-.+...++
T Consensus 755 D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIY 834 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAY 834 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHH
Confidence 567899999999988775 222 3577899999999999999999876431 1222 35778887777888999
Q ss_pred HHHHHHhCCCCCCC-CChhHHHHHHHHHHhc--CCcEEEEEcCCCCcc-----chhhhcCCCCCCCCCcEEEE--EecCh
Q 037851 223 GELADQLGMQFDEE-SDVPGRARKLYARLQK--ENKILIILDNIWEDL-----DLEKVGVPSGNDCRGCKVLL--TARDR 292 (1053)
Q Consensus 223 ~~i~~~l~~~~~~~-~~~~~~~~~l~~~l~~--~~~~LlvlDdv~~~~-----~~~~l~~~~~~~~~gs~iiv--TtR~~ 292 (1053)
..|.+++....+.. .........++..+.. ....+||||+|+... .+..+.... ...+++|+| +|.+.
T Consensus 835 qvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~--~~s~SKLiLIGISNdl 912 (1164)
T PTZ00112 835 QVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWP--TKINSKLVLIAISNTM 912 (1164)
T ss_pred HHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHh--hccCCeEEEEEecCch
Confidence 99999985433221 1222344555555421 234589999997542 122221111 123455443 33322
Q ss_pred H--------HHHhhCCCcccccCCCHHHHHHHHHHHhCCC---CCCccchHHHHHHHHHhCCCchHHHHHHHHHh
Q 037851 293 H--------VLESIGSKTLRIDVLNDEEAWTLFKKMTGDC---AEKGELKSIATDVAKECGGLPIAIVTLAKALR 356 (1053)
Q Consensus 293 ~--------v~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~---~~~~~~~~~~~~i~~~~~GlPlai~~~~~~L~ 356 (1053)
+ +...++...+...|++.++-.+++..++... .++..++-+|+.++...|-.-.||.++-.+..
T Consensus 913 DLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgE 987 (1164)
T PTZ00112 913 DLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFE 987 (1164)
T ss_pred hcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHh
Confidence 1 2222334457789999999999999988532 22222333344444444455566666655543
No 41
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.65 E-value=8.1e-07 Score=101.10 Aligned_cols=176 Identities=16% Similarity=0.182 Sum_probs=107.9
Q ss_pred cccccchHHHHHH---HHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHH
Q 037851 152 YEAFESRMSTLKS---LQNALLDPDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQ 228 (1053)
Q Consensus 152 ~~~~~gR~~~~~~---l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 228 (1053)
...++|++..+.. +..++..+....+.++|++|+||||+|+.+++... .. |+.++....-.+-++.+.+
T Consensus 11 l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~--~~-----~~~l~a~~~~~~~ir~ii~- 82 (413)
T PRK13342 11 LDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATD--AP-----FEALSAVTSGVKDLREVIE- 82 (413)
T ss_pred HHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhC--CC-----EEEEecccccHHHHHHHHH-
Confidence 4568888877655 77777777777889999999999999999998764 22 2333222111111122221
Q ss_pred hCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCcc--chhhhcCCCCCCCCCcEEEE--EecChHHH--Hhh-C-C
Q 037851 229 LGMQFDEESDVPGRARKLYARLQKENKILIILDNIWEDL--DLEKVGVPSGNDCRGCKVLL--TARDRHVL--ESI-G-S 300 (1053)
Q Consensus 229 l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~iiv--TtR~~~v~--~~~-~-~ 300 (1053)
........+++.+|++|+++... +.+.+...+. .|..++| ||.+.... ... . .
T Consensus 83 ----------------~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~SR~ 143 (413)
T PRK13342 83 ----------------EARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALLSRA 143 (413)
T ss_pred ----------------HHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhccc
Confidence 11111223678899999998652 3344433322 2444444 34443321 111 1 4
Q ss_pred CcccccCCCHHHHHHHHHHHhCCCC-CC-ccchHHHHHHHHHhCCCchHHHHHHHH
Q 037851 301 KTLRIDVLNDEEAWTLFKKMTGDCA-EK-GELKSIATDVAKECGGLPIAIVTLAKA 354 (1053)
Q Consensus 301 ~~~~l~~L~~~~~~~lf~~~~~~~~-~~-~~~~~~~~~i~~~~~GlPlai~~~~~~ 354 (1053)
..+.+.+++.++.+.++.+.+.... .. .-.++..+.|++.|+|.|..+..+...
T Consensus 144 ~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~ 199 (413)
T PRK13342 144 QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLEL 199 (413)
T ss_pred eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 6789999999999999988764211 11 223567888999999999766544433
No 42
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.65 E-value=2.2e-07 Score=98.14 Aligned_cols=219 Identities=16% Similarity=0.162 Sum_probs=124.6
Q ss_pred cccccchHHHH---HHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcC-HHHHHHHHHH
Q 037851 152 YEAFESRMSTL---KSLQNALLDPDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPD-IKKVQGELAD 227 (1053)
Q Consensus 152 ~~~~~gR~~~~---~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~-~~~~~~~i~~ 227 (1053)
..+++|.+..+ .-|..++..+.+.-...||++|+||||||+.++.... ..| ..++-..+ ++++ +++++
T Consensus 23 lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~--~~f-----~~~sAv~~gvkdl-r~i~e 94 (436)
T COG2256 23 LDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTN--AAF-----EALSAVTSGVKDL-REIIE 94 (436)
T ss_pred HHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhC--Cce-----EEeccccccHHHH-HHHHH
Confidence 34455544333 2233445567888889999999999999999998765 333 44443332 3333 22222
Q ss_pred HhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCc--cchhhhcCCCCCCCCCcEEEE--EecChHHHHh----hC
Q 037851 228 QLGMQFDEESDVPGRARKLYARLQKENKILIILDNIWED--LDLEKVGVPSGNDCRGCKVLL--TARDRHVLES----IG 299 (1053)
Q Consensus 228 ~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iiv--TtR~~~v~~~----~~ 299 (1053)
.-++....+++.+|++|.|..- .+-+.+ .++ -.+|.-|+| ||.++...-. ..
T Consensus 95 -----------------~a~~~~~~gr~tiLflDEIHRfnK~QQD~l-Lp~--vE~G~iilIGATTENPsF~ln~ALlSR 154 (436)
T COG2256 95 -----------------EARKNRLLGRRTILFLDEIHRFNKAQQDAL-LPH--VENGTIILIGATTENPSFELNPALLSR 154 (436)
T ss_pred -----------------HHHHHHhcCCceEEEEehhhhcChhhhhhh-hhh--hcCCeEEEEeccCCCCCeeecHHHhhh
Confidence 1222222488999999999765 333434 332 335665554 7877754432 12
Q ss_pred CCcccccCCCHHHHHHHHHHHhCCCC---C--Cc-cchHHHHHHHHHhCCCchHHHHH---HHHHhcCC---CHHHHHHH
Q 037851 300 SKTLRIDVLNDEEAWTLFKKMTGDCA---E--KG-ELKSIATDVAKECGGLPIAIVTL---AKALRNKT---SVSTWKDA 367 (1053)
Q Consensus 300 ~~~~~l~~L~~~~~~~lf~~~~~~~~---~--~~-~~~~~~~~i~~~~~GlPlai~~~---~~~L~~~~---~~~~w~~~ 367 (1053)
..++.+++|+.+|..+++.+.+.... . .. --++...-|++.++|---++--. +..+.... ..+..+++
T Consensus 155 ~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~~~ 234 (436)
T COG2256 155 ARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELLEEI 234 (436)
T ss_pred hheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHHHHH
Confidence 67899999999999999998542111 1 11 12456778888888875433222 22222221 23444444
Q ss_pred HHHhcCCCCCchhhhHHHhhhhHHhhhcccCh
Q 037851 368 LRQLKRPSHRNFEGVLAKTYSAIELSYKYLRE 399 (1053)
Q Consensus 368 l~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~ 399 (1053)
+++-...... -.+...++.+++.-|...=.+
T Consensus 235 l~~~~~~~Dk-~gD~hYdliSA~hKSvRGSD~ 265 (436)
T COG2256 235 LQRRSARFDK-DGDAHYDLISALHKSVRGSDP 265 (436)
T ss_pred HhhhhhccCC-CcchHHHHHHHHHHhhccCCc
Confidence 4432211111 113445667777777666555
No 43
>PRK06893 DNA replication initiation factor; Validated
Probab=98.59 E-value=4e-07 Score=94.49 Aligned_cols=151 Identities=15% Similarity=0.144 Sum_probs=93.9
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhc
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLGMQFDEESDVPGRARKLYARLQK 252 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 252 (1053)
..+.+.++|++|+|||+||+.+++....+ ...+.|+++..... . ...+.+.+
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~~~--~~~~~y~~~~~~~~---~---------------------~~~~~~~~-- 89 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYLLN--QRTAIYIPLSKSQY---F---------------------SPAVLENL-- 89 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEeeHHHhhh---h---------------------hHHHHhhc--
Confidence 34678999999999999999999987643 23456776642100 0 01122222
Q ss_pred CCcEEEEEcCCCCc---cchhh-hcCCCCC-CCCCcEEEEE-ecC---------hHHHHhhC-CCcccccCCCHHHHHHH
Q 037851 253 ENKILIILDNIWED---LDLEK-VGVPSGN-DCRGCKVLLT-ARD---------RHVLESIG-SKTLRIDVLNDEEAWTL 316 (1053)
Q Consensus 253 ~~~~LlvlDdv~~~---~~~~~-l~~~~~~-~~~gs~iivT-tR~---------~~v~~~~~-~~~~~l~~L~~~~~~~l 316 (1053)
.+.-+||+||+|.. .+|+. +...+.. ...|..+||+ ++. +++...++ ...+++++++.++.+++
T Consensus 90 ~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~i 169 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIV 169 (229)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHH
Confidence 23458999999864 34442 2111111 1235556554 443 35555555 67889999999999999
Q ss_pred HHHHhCCCCCCccchHHHHHHHHHhCCCchHHHHHH
Q 037851 317 FKKMTGDCAEKGELKSIATDVAKECGGLPIAIVTLA 352 (1053)
Q Consensus 317 f~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~ 352 (1053)
+++.+.... -.--+++..-|++++.|..-++..+-
T Consensus 170 L~~~a~~~~-l~l~~~v~~~L~~~~~~d~r~l~~~l 204 (229)
T PRK06893 170 LQRNAYQRG-IELSDEVANFLLKRLDRDMHTLFDAL 204 (229)
T ss_pred HHHHHHHcC-CCCCHHHHHHHHHhccCCHHHHHHHH
Confidence 998886321 12225677888888887665554433
No 44
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.56 E-value=2.7e-09 Score=115.96 Aligned_cols=140 Identities=26% Similarity=0.398 Sum_probs=117.8
Q ss_pred CCcccccCCCceeEEeecCccccCCCcccccCccCcEEEcCCcccCC-ccccCCCCCCcEEEccCCCCcccchhhhccCC
Q 037851 519 IPDNIFIGTPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDGCELED-IRVIGELKDLEILSLQGSKIEQLPREIGQLTQ 597 (1053)
Q Consensus 519 ~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~ 597 (1053)
+|..+ ..+..|..|.+..|.+..+|..++++..|.||+|+.|.++. |..++.|+ |+.|-+++|+++.+|..|+.+..
T Consensus 90 lp~~~-~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~t 167 (722)
T KOG0532|consen 90 LPEEA-CAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPT 167 (722)
T ss_pred CchHH-HHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccccchh
Confidence 66553 56778888999999999999999999999999999999887 67777765 89999999999999999998999
Q ss_pred CCeeeccCcccccccCcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCCeEEEEeccCCCCCCcc
Q 037851 598 LKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLEINILDAGILPSGF 675 (1053)
Q Consensus 598 L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~ 675 (1053)
|.+||.+. +.+..+|+. ++.+.+|+.|++..|.+ ...+.++..|+ |..|+++++....+|-.+
T Consensus 168 l~~ld~s~-nei~slpsq-l~~l~slr~l~vrRn~l------------~~lp~El~~Lp-Li~lDfScNkis~iPv~f 230 (722)
T KOG0532|consen 168 LAHLDVSK-NEIQSLPSQ-LGYLTSLRDLNVRRNHL------------EDLPEELCSLP-LIRLDFSCNKISYLPVDF 230 (722)
T ss_pred HHHhhhhh-hhhhhchHH-hhhHHHHHHHHHhhhhh------------hhCCHHHhCCc-eeeeecccCceeecchhh
Confidence 99999998 467778655 89999999999988876 35677777664 788999999888888776
No 45
>PTZ00202 tuzin; Provisional
Probab=98.55 E-value=2.6e-05 Score=84.33 Aligned_cols=163 Identities=15% Similarity=0.163 Sum_probs=100.2
Q ss_pred CCCCcccccchHHHHHHHHHHhcC---CCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHH
Q 037851 148 SGKGYEAFESRMSTLKSLQNALLD---PDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGE 224 (1053)
Q Consensus 148 ~~~~~~~~~gR~~~~~~l~~~l~~---~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 224 (1053)
.+.+...|+||+.++.++...|.+ ...+++.|.|++|+|||||++.+..... + ...+++.. +..+++..
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~-~qL~vNpr---g~eElLr~ 328 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----M-PAVFVDVR---GTEDTLRS 328 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----c-eEEEECCC---CHHHHHHH
Confidence 355677899999999999988863 2346999999999999999999996543 1 13333333 67999999
Q ss_pred HHHHhCCCCCCCCChhHHHHHHHHHHh----c-CCcEEEEEc--CCCCcc-chhhhcCCCCCCCCCcEEEEEecChHHHH
Q 037851 225 LADQLGMQFDEESDVPGRARKLYARLQ----K-ENKILIILD--NIWEDL-DLEKVGVPSGNDCRGCKVLLTARDRHVLE 296 (1053)
Q Consensus 225 i~~~l~~~~~~~~~~~~~~~~l~~~l~----~-~~~~LlvlD--dv~~~~-~~~~l~~~~~~~~~gs~iivTtR~~~v~~ 296 (1053)
|+.+||.+.. ....+....+.+.+. . +++.+||+- +-.+.. ...+. ..+.....-|.|++----+.+..
T Consensus 329 LL~ALGV~p~--~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~-v~la~drr~ch~v~evpleslt~ 405 (550)
T PTZ00202 329 VVKALGVPNV--EACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEV-VALACDRRLCHVVIEVPLESLTI 405 (550)
T ss_pred HHHHcCCCCc--ccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHH-HHHHccchhheeeeeehHhhcch
Confidence 9999997332 222234444444443 3 667777762 221111 11111 11222334456666544333222
Q ss_pred h---hC-CCcccccCCCHHHHHHHHHHHh
Q 037851 297 S---IG-SKTLRIDVLNDEEAWTLFKKMT 321 (1053)
Q Consensus 297 ~---~~-~~~~~l~~L~~~~~~~lf~~~~ 321 (1053)
. .. -.-|-+.+++.++|........
T Consensus 406 ~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 406 ANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred hcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 1 11 3467888999999888766543
No 46
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=6.7e-06 Score=90.51 Aligned_cols=199 Identities=20% Similarity=0.273 Sum_probs=129.2
Q ss_pred cccchHHHHHHHHHHhc----CCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHh
Q 037851 154 AFESRMSTLKSLQNALL----DPDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQL 229 (1053)
Q Consensus 154 ~~~gR~~~~~~l~~~l~----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 229 (1053)
.+.+|+++++++...|. ...+.-+.|+|..|+|||+.++.+.+.......=..+++|++-...+..+++..|++++
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~ 97 (366)
T COG1474 18 ELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKL 97 (366)
T ss_pred cccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHc
Confidence 38899999999988775 34445599999999999999999999987542222279999999999999999999999
Q ss_pred CCCCCCCCChhHHHHHHHHHHhc-CCcEEEEEcCCCCccch-----hhhcCCCCCCCCCcE--EEEEecChHHHH-----
Q 037851 230 GMQFDEESDVPGRARKLYARLQK-ENKILIILDNIWEDLDL-----EKVGVPSGNDCRGCK--VLLTARDRHVLE----- 296 (1053)
Q Consensus 230 ~~~~~~~~~~~~~~~~l~~~l~~-~~~~LlvlDdv~~~~~~-----~~l~~~~~~~~~gs~--iivTtR~~~v~~----- 296 (1053)
+..........+....+.+.+.. ++.++||||+++....- -.+......+ .++ ||..+-+..+..
T Consensus 98 ~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~--~~~v~vi~i~n~~~~~~~ld~r 175 (366)
T COG1474 98 GKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN--KVKVSIIAVSNDDKFLDYLDPR 175 (366)
T ss_pred CCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcccc--ceeEEEEEEeccHHHHHHhhhh
Confidence 74333333333556666666653 67899999999755222 2222221122 444 344444443332
Q ss_pred ---hhCCCcccccCCCHHHHHHHHHHHhC----CCCCCccchHHHHHHHHHhCC-CchHHHHHHHH
Q 037851 297 ---SIGSKTLRIDVLNDEEAWTLFKKMTG----DCAEKGELKSIATDVAKECGG-LPIAIVTLAKA 354 (1053)
Q Consensus 297 ---~~~~~~~~l~~L~~~~~~~lf~~~~~----~~~~~~~~~~~~~~i~~~~~G-lPlai~~~~~~ 354 (1053)
..+...+...|-+.+|-.+++..++. ...-.++.-+....++..-+| --.|+..+-+.
T Consensus 176 v~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A 241 (366)
T COG1474 176 VKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRA 241 (366)
T ss_pred hhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHH
Confidence 23344588999999999999998874 122223333333344444443 34455444333
No 47
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.53 E-value=1.1e-08 Score=113.61 Aligned_cols=81 Identities=23% Similarity=0.221 Sum_probs=36.3
Q ss_pred CCCceeEEeecCccccC-------CCcccccCccCcEEEcCCcccCC--ccccCCCC---CCcEEEccCCCCc-----cc
Q 037851 526 GTPKLKVLDFTRMRLLS-------LPSSIHLLTDLRTLCLDGCELED--IRVIGELK---DLEILSLQGSKIE-----QL 588 (1053)
Q Consensus 526 ~~~~Lr~L~l~~~~~~~-------lp~~i~~l~~Lr~L~L~~~~~~~--~~~i~~l~---~L~~L~l~~~~l~-----~l 588 (1053)
..+.++.|+++++.+.. ++..+..+.+|++|++++|.+.. +..+..+. +|++|++++|.+. .+
T Consensus 49 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l 128 (319)
T cd00116 49 PQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLL 128 (319)
T ss_pred hCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHH
Confidence 34445555555544331 12234445555555555555432 22222222 2555555555443 12
Q ss_pred chhhhcc-CCCCeeeccCc
Q 037851 589 PREIGQL-TQLKLLDLSNC 606 (1053)
Q Consensus 589 p~~i~~L-~~L~~L~l~~~ 606 (1053)
...+..+ ++|+.|++++|
T Consensus 129 ~~~l~~~~~~L~~L~L~~n 147 (319)
T cd00116 129 AKGLKDLPPALEKLVLGRN 147 (319)
T ss_pred HHHHHhCCCCceEEEcCCC
Confidence 2333444 55555555553
No 48
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.49 E-value=1.1e-06 Score=91.91 Aligned_cols=169 Identities=12% Similarity=0.158 Sum_probs=102.9
Q ss_pred chHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhCCCCCCC
Q 037851 157 SRMSTLKSLQNALLDPDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLGMQFDEE 236 (1053)
Q Consensus 157 gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~ 236 (1053)
+....++.+.+++.....+.+.|+|+.|+|||++|+.+++.... .....+|++++.-.+. .
T Consensus 21 ~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~--~~~~~~~i~~~~~~~~------~----------- 81 (226)
T TIGR03420 21 GNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEE--RGKSAIYLPLAELAQA------D----------- 81 (226)
T ss_pred CcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHh--cCCcEEEEeHHHHHHh------H-----------
Confidence 34556777777765556678999999999999999999988753 2334566665543210 0
Q ss_pred CChhHHHHHHHHHHhcCCcEEEEEcCCCCcc---chh-hhcCCCCC-CCCCcEEEEEecChH---------HHHhhC-CC
Q 037851 237 SDVPGRARKLYARLQKENKILIILDNIWEDL---DLE-KVGVPSGN-DCRGCKVLLTARDRH---------VLESIG-SK 301 (1053)
Q Consensus 237 ~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~---~~~-~l~~~~~~-~~~gs~iivTtR~~~---------v~~~~~-~~ 301 (1053)
..+...+. +.-+||+||++... .|. .+...+.. ...+.++|+||+... +...+. ..
T Consensus 82 -------~~~~~~~~--~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~ 152 (226)
T TIGR03420 82 -------PEVLEGLE--QADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGL 152 (226)
T ss_pred -------HHHHhhcc--cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCe
Confidence 01111221 23489999997643 222 22222111 112347888887532 222232 46
Q ss_pred cccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCchHHHHHHHH
Q 037851 302 TLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPIAIVTLAKA 354 (1053)
Q Consensus 302 ~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~ 354 (1053)
.+++.+++.++...+++..+.... ..--++..+.|++.+.|.|..+..+...
T Consensus 153 ~i~l~~l~~~e~~~~l~~~~~~~~-~~~~~~~l~~L~~~~~gn~r~L~~~l~~ 204 (226)
T TIGR03420 153 VFQLPPLSDEEKIAALQSRAARRG-LQLPDEVADYLLRHGSRDMGSLMALLDA 204 (226)
T ss_pred eEecCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 789999999999999887653111 1122456677888888888776655433
No 49
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.48 E-value=6.8e-09 Score=112.94 Aligned_cols=141 Identities=24% Similarity=0.348 Sum_probs=105.0
Q ss_pred CCcccccCCCceeEEeecCccccCCCcccccCccCcEEEcCCcccCC-ccccCCCCCCcEEEccCCCCcccchhhhccCC
Q 037851 519 IPDNIFIGTPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDGCELED-IRVIGELKDLEILSLQGSKIEQLPREIGQLTQ 597 (1053)
Q Consensus 519 ~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~ 597 (1053)
+|..+ .++..|.+|+|+.|.+..+|..++.|. |++|.+++|+++. |..++.+.+|..||.+.|.+..+|..++.|.+
T Consensus 113 ip~~i-~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~s 190 (722)
T KOG0532|consen 113 IPEAI-CNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTS 190 (722)
T ss_pred cchhh-hhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHH
Confidence 45443 567788888888888888888777664 7888888888776 77888888888888888888888888888888
Q ss_pred CCeeeccCcccccccCcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCCeEEEEeccCCCCCCccc
Q 037851 598 LKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLEINILDAGILPSGFF 676 (1053)
Q Consensus 598 L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~ 676 (1053)
|+.|+++. +.+..+|++ +. --.|..||++.|++ ...+-.+.+|+.|+.|.+.++.....|..+.
T Consensus 191 lr~l~vrR-n~l~~lp~E-l~-~LpLi~lDfScNki------------s~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC 254 (722)
T KOG0532|consen 191 LRDLNVRR-NHLEDLPEE-LC-SLPLIRLDFSCNKI------------SYLPVDFRKMRHLQVLQLENNPLQSPPAQIC 254 (722)
T ss_pred HHHHHHhh-hhhhhCCHH-Hh-CCceeeeecccCce------------eecchhhhhhhhheeeeeccCCCCCChHHHH
Confidence 88888887 566777655 45 33477888887775 3455567778888888888777666655543
No 50
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.47 E-value=2.3e-06 Score=95.73 Aligned_cols=197 Identities=18% Similarity=0.172 Sum_probs=110.8
Q ss_pred cccccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCC-CeEEEEEEcCCcCH--HHHHH--HHH
Q 037851 152 YEAFESRMSTLKSLQNALLDPDVTITGVYGMGGLGKTTLVKEVARQVKKDKHF-DEVVFAEVSDTPDI--KKVQG--ELA 226 (1053)
Q Consensus 152 ~~~~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f-~~~~wv~~s~~~~~--~~~~~--~i~ 226 (1053)
...++|++..++.+..++..+..+.+.++|+.|+||||+|+.+++..... .+ ...++++++...+. ..+.. ...
T Consensus 14 ~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 92 (337)
T PRK12402 14 LEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGD-PWENNFTEFNVADFFDQGKKYLVEDPRFA 92 (337)
T ss_pred HHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCc-ccccceEEechhhhhhcchhhhhcCcchh
Confidence 45688999999999998887766678899999999999999999886522 22 22345554432100 00000 000
Q ss_pred HHhCCCCCCCCChhHHHHHHHHHHh-----cCCcEEEEEcCCCCcc--chhhhcCCCCCCCCCcEEEEEecChH-HHHhh
Q 037851 227 DQLGMQFDEESDVPGRARKLYARLQ-----KENKILIILDNIWEDL--DLEKVGVPSGNDCRGCKVLLTARDRH-VLESI 298 (1053)
Q Consensus 227 ~~l~~~~~~~~~~~~~~~~l~~~l~-----~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~iivTtR~~~-v~~~~ 298 (1053)
+.++.............+.+.+... ...+-+||+||+.... ....+...+......+++|+||.... +....
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~L 172 (337)
T PRK12402 93 HFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPI 172 (337)
T ss_pred hhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchhh
Confidence 0000000000001122222222221 1334589999996542 22223222222233567887775432 22222
Q ss_pred C--CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCchHHHH
Q 037851 299 G--SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPIAIVT 350 (1053)
Q Consensus 299 ~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~ 350 (1053)
. ...+++.+++.++...++.+.+..... .--.+....+++.++|.+-.+..
T Consensus 173 ~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~-~~~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 173 RSRCLPLFFRAPTDDELVDVLESIAEAEGV-DYDDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred cCCceEEEecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHH
Confidence 2 457889999999999999887642211 12246788899999988755543
No 51
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.46 E-value=5.6e-07 Score=84.96 Aligned_cols=116 Identities=23% Similarity=0.318 Sum_probs=81.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhc---CCCCeEEEEEEcCCcCHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHH
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVKKD---KHFDEVVFAEVSDTPDIKKVQGELADQLGMQFDEESDVPGRARKLYARL 250 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 250 (1053)
.+++.|+|.+|+|||++++.+++..... ..-..++|+.+....+...+...|+++++...............+.+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 4689999999999999999999986421 1134577999988889999999999999987766445556667788888
Q ss_pred hcCCcEEEEEcCCCCc-c--chhhhcCCCCCCCCCcEEEEEecC
Q 037851 251 QKENKILIILDNIWED-L--DLEKVGVPSGNDCRGCKVLLTARD 291 (1053)
Q Consensus 251 ~~~~~~LlvlDdv~~~-~--~~~~l~~~~~~~~~gs~iivTtR~ 291 (1053)
.+.+..+||+||++.. . .++.+.... + ..+.++|+..+.
T Consensus 84 ~~~~~~~lviDe~~~l~~~~~l~~l~~l~-~-~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLFSDEFLEFLRSLL-N-ESNIKVVLVGTP 125 (131)
T ss_dssp HHCTEEEEEEETTHHHHTHHHHHHHHHHT-C-SCBEEEEEEESS
T ss_pred HhcCCeEEEEeChHhcCCHHHHHHHHHHH-h-CCCCeEEEEECh
Confidence 7666679999999765 2 223332221 1 456778877665
No 52
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.46 E-value=3.1e-07 Score=97.83 Aligned_cols=289 Identities=22% Similarity=0.245 Sum_probs=185.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhcCCC-CeEEEEEEcCCcCHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhc
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVKKDKHF-DEVVFAEVSDTPDIKKVQGELADQLGMQFDEESDVPGRARKLYARLQK 252 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f-~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 252 (1053)
.+.+.++|.|||||||++-.+.. .+ ..| +.+.++...+..+...+.-.+...++....... ..+..+..+..
T Consensus 14 ~RlvtL~g~ggvgkttl~~~~a~-~~--~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g~---~~~~~~~~~~~- 86 (414)
T COG3903 14 LRLVTLTGAGGVGKTTLALQAAH-AA--SEYADGVAFVDLAPITDPALVFPTLAGALGLHVQPGD---SAVDTLVRRIG- 86 (414)
T ss_pred hheeeeeccCccceehhhhhhHh-Hh--hhcccceeeeeccccCchhHhHHHHHhhcccccccch---HHHHHHHHHHh-
Confidence 47899999999999999999998 44 345 778889888888888888877777776543322 23344555553
Q ss_pred CCcEEEEEcCCCCcc-chhhhcCCCCCCCCCcEEEEEecChHHHHhhCCCcccccCCCHH-HHHHHHHHHhCCC----CC
Q 037851 253 ENKILIILDNIWEDL-DLEKVGVPSGNDCRGCKVLLTARDRHVLESIGSKTLRIDVLNDE-EAWTLFKKMTGDC----AE 326 (1053)
Q Consensus 253 ~~~~LlvlDdv~~~~-~~~~l~~~~~~~~~gs~iivTtR~~~v~~~~~~~~~~l~~L~~~-~~~~lf~~~~~~~----~~ 326 (1053)
++|.++|+||..+.. +-..+...+..+...-.|+.|+|..... .+...+.+.+|+.. ++.++|...+... .-
T Consensus 87 ~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~--~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l 164 (414)
T COG3903 87 DRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILV--AGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWL 164 (414)
T ss_pred hhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcc--cccccccCCccccCCchhHHHHHHHHHhccceee
Confidence 899999999997653 2233334444455566788898865322 23566778887755 7899988776311 11
Q ss_pred CccchHHHHHHHHHhCCCchHHHHHHHHHhcCCCHHHHH----HHHHHhcCCCCCchhhhHHHhhhhHHhhhcccChhhh
Q 037851 327 KGELKSIATDVAKECGGLPIAIVTLAKALRNKTSVSTWK----DALRQLKRPSHRNFEGVLAKTYSAIELSYKYLREEEL 402 (1053)
Q Consensus 327 ~~~~~~~~~~i~~~~~GlPlai~~~~~~L~~~~~~~~w~----~~l~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~l 402 (1053)
.........+|.++.+|.|++|...++..+.- ...+-. +-...+... ........+...+.+..||.-|... -
T Consensus 165 ~~~~~a~v~~icr~ldg~~laielaaarv~sl-~~~~i~~~L~drf~ll~~~-~r~a~~~~qtl~asl~ws~~lLtgw-e 241 (414)
T COG3903 165 TDDNAAAVAEICRRLDGIPLAIELAAARVRSL-SPDEIAAGLRDRFRLLTGG-ARLAVLRQQTLRASLDWSYALLTGW-E 241 (414)
T ss_pred cCCchHHHHHHHHHhhcchHHHHHHHHHHHhc-CHHHHHHHHhhHHHHHhcc-cccchhHHHhccchhhhhhHhhhhH-H
Confidence 22334668899999999999999999998775 333222 222222222 2212234567888999999999875 4
Q ss_pred HHHHHhcCCCCCCCchhHHHHHHHHHhccccCccCHHHHHHHHHHHHHHHHhhcccccC---CCCeEEehHHHHHHHHHH
Q 037851 403 KKLFLQCSLMGSPQASTLNLLKYAIGLGIVKGVGTVEEARDKVNTLVDQLRDACLLLDG---TNDCFSMHDVVRDVAISI 479 (1053)
Q Consensus 403 k~cfl~~s~fp~~~~~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~---~~~~~~mHdlv~~~a~~~ 479 (1053)
+--|.-++.|. ..|... ...|.+.|-... .........+..+++.+++... ..-.|+.-+-+|.|+..+
T Consensus 242 ~~~~~rLa~~~-g~f~~~--l~~~~a~g~~~~-----~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~Yalae 313 (414)
T COG3903 242 RALFGRLAVFV-GGFDLG--LALAVAAGADVD-----VPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAE 313 (414)
T ss_pred HHHhcchhhhh-hhhccc--HHHHHhcCCccc-----cchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 77888888887 555544 334444332210 0011111234456677765432 334577777777777765
Q ss_pred hcc
Q 037851 480 ASR 482 (1053)
Q Consensus 480 ~~~ 482 (1053)
-.+
T Consensus 314 L~r 316 (414)
T COG3903 314 LHR 316 (414)
T ss_pred HHh
Confidence 543
No 53
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.45 E-value=8.2e-06 Score=94.78 Aligned_cols=180 Identities=13% Similarity=0.149 Sum_probs=113.5
Q ss_pred CcccccchHHHHHHHHHHhcCCCe-eEEEEEcCCCCcHHHHHHHHHHHhhhcC-------------------CCCeEEEE
Q 037851 151 GYEAFESRMSTLKSLQNALLDPDV-TITGVYGMGGLGKTTLVKEVARQVKKDK-------------------HFDEVVFA 210 (1053)
Q Consensus 151 ~~~~~~gR~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~f~~~~wv 210 (1053)
...+++|.+..++.|.+++..+++ ..+.++|..|+||||+|+.+++...-.. .|.-++++
T Consensus 14 tFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEI 93 (830)
T PRK07003 14 DFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEM 93 (830)
T ss_pred cHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEe
Confidence 356789999999999999986654 4667999999999999999998764211 11122333
Q ss_pred EEcCCcCHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHh----cCCcEEEEEcCCCCcc--chhhhcCCCCCCCCCcE
Q 037851 211 EVSDTPDIKKVQGELADQLGMQFDEESDVPGRARKLYARLQ----KENKILIILDNIWEDL--DLEKVGVPSGNDCRGCK 284 (1053)
Q Consensus 211 ~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~ 284 (1053)
+.+....+.+ +..+.+... .++.-++|||+++... .++.+...+-......+
T Consensus 94 DAas~rgVDd----------------------IReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~ 151 (830)
T PRK07003 94 DAASNRGVDE----------------------MAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVK 151 (830)
T ss_pred cccccccHHH----------------------HHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeE
Confidence 3322222211 122222211 2455688899998663 35555444433334677
Q ss_pred EEEEecChHHH-HhhC--CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCc-hHHHHHHH
Q 037851 285 VLLTARDRHVL-ESIG--SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLP-IAIVTLAK 353 (1053)
Q Consensus 285 iivTtR~~~v~-~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlP-lai~~~~~ 353 (1053)
+|+||.+..-. ..+. ...+++++++.++..+.+.+.+....- .--.+....|++.++|.. -|+..+-.
T Consensus 152 FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI-~id~eAL~lIA~~A~GsmRdALsLLdQ 223 (830)
T PRK07003 152 FILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERI-AFEPQALRLLARAAQGSMRDALSLTDQ 223 (830)
T ss_pred EEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 88777765422 2222 567899999999999999888753221 112466788999999866 45555333
No 54
>PRK04195 replication factor C large subunit; Provisional
Probab=98.42 E-value=1.9e-05 Score=91.84 Aligned_cols=183 Identities=16% Similarity=0.154 Sum_probs=111.9
Q ss_pred CCcccccchHHHHHHHHHHhcC---C-CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHH
Q 037851 150 KGYEAFESRMSTLKSLQNALLD---P-DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGEL 225 (1053)
Q Consensus 150 ~~~~~~~gR~~~~~~l~~~l~~---~-~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 225 (1053)
.....++|+++.++++.+|+.. + ..+.+.|+|++|+||||+|+.+++... |+ ++.++++...+.. .+..+
T Consensus 11 ~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~----~~-~ielnasd~r~~~-~i~~~ 84 (482)
T PRK04195 11 KTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG----WE-VIELNASDQRTAD-VIERV 84 (482)
T ss_pred CCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC----CC-EEEEcccccccHH-HHHHH
Confidence 3456789999999999988862 1 267899999999999999999999864 32 3445555443332 22233
Q ss_pred HHHhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCccc------hhhhcCCCCCCCCCcEEEEEecChH-HHH-h
Q 037851 226 ADQLGMQFDEESDVPGRARKLYARLQKENKILIILDNIWEDLD------LEKVGVPSGNDCRGCKVLLTARDRH-VLE-S 297 (1053)
Q Consensus 226 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~------~~~l~~~~~~~~~gs~iivTtR~~~-v~~-~ 297 (1053)
+...... ..+...++-+||+|+++.... +..+...+. ..+..||+|+.+.. ... .
T Consensus 85 i~~~~~~---------------~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~ 147 (482)
T PRK04195 85 AGEAATS---------------GSLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLRE 147 (482)
T ss_pred HHHhhcc---------------CcccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhh
Confidence 2221100 001113678999999976422 333332222 12344666664432 111 1
Q ss_pred hC--CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCchHHHHHHHHHh
Q 037851 298 IG--SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPIAIVTLAKALR 356 (1053)
Q Consensus 298 ~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~L~ 356 (1053)
.. ...+++.+++.++....+.+.+...... --.++...|++.++|-.-.+......+.
T Consensus 148 Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~-i~~eaL~~Ia~~s~GDlR~ain~Lq~~a 207 (482)
T PRK04195 148 LRNACLMIEFKRLSTRSIVPVLKRICRKEGIE-CDDEALKEIAERSGGDLRSAINDLQAIA 207 (482)
T ss_pred HhccceEEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 22 5678999999999999988877422111 1246788999999998766654444443
No 55
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.41 E-value=2.1e-06 Score=83.05 Aligned_cols=123 Identities=20% Similarity=0.174 Sum_probs=75.4
Q ss_pred cchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhCCCCCC
Q 037851 156 ESRMSTLKSLQNALLDPDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLGMQFDE 235 (1053)
Q Consensus 156 ~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~ 235 (1053)
.||+..+.++...+.....+.+.|+|.+|+||||+|+.+++.... .-..++++...+..........+...
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~------- 71 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFR--PGAPFLYLNASDLLEGLVVAELFGHF------- 71 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhc--CCCCeEEEehhhhhhhhHHHHHhhhh-------
Confidence 378888999988887656678999999999999999999998752 22446677666544322222111100
Q ss_pred CCChhHHHHHHHHHHhcCCcEEEEEcCCCCc-----cchhhhcCCCCCC---CCCcEEEEEecChH
Q 037851 236 ESDVPGRARKLYARLQKENKILIILDNIWED-----LDLEKVGVPSGND---CRGCKVLLTARDRH 293 (1053)
Q Consensus 236 ~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~-----~~~~~l~~~~~~~---~~gs~iivTtR~~~ 293 (1053)
............++.+||+||++.. ..+.......... ..+.+||+||....
T Consensus 72 ------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0001111111356789999999853 2222222222221 35778998888653
No 56
>PF13173 AAA_14: AAA domain
Probab=98.41 E-value=6.1e-07 Score=83.87 Aligned_cols=118 Identities=22% Similarity=0.259 Sum_probs=81.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhcCC
Q 037851 175 TITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLGMQFDEESDVPGRARKLYARLQKEN 254 (1053)
Q Consensus 175 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 254 (1053)
+++.|.|+.|+||||++++++++.. ....++|++..+.........+ ..+.+.+.. ..+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~~~-----------------~~~~~~~~~-~~~ 61 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLADPD-----------------LLEYFLELI-KPG 61 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhhhh-----------------hHHHHHHhh-ccC
Confidence 6899999999999999999998765 2345677776654331111000 112222222 246
Q ss_pred cEEEEEcCCCCccchhhhcCCCCCCCCCcEEEEEecChHHHHh------hC-CCcccccCCCHHHH
Q 037851 255 KILIILDNIWEDLDLEKVGVPSGNDCRGCKVLLTARDRHVLES------IG-SKTLRIDVLNDEEA 313 (1053)
Q Consensus 255 ~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~~------~~-~~~~~l~~L~~~~~ 313 (1053)
+.+|++|++....+|......+.+..+..+|++|+........ .| ...+++.||+..|.
T Consensus 62 ~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 62 KKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred CcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 7889999999998888776666665567899999998766642 12 45679999988763
No 57
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.40 E-value=8.9e-06 Score=90.80 Aligned_cols=175 Identities=11% Similarity=0.164 Sum_probs=108.5
Q ss_pred cccccchHHHHHHHHHHhcCCCe-eEEEEEcCCCCcHHHHHHHHHHHhhhcCC-------------------CCeEEEEE
Q 037851 152 YEAFESRMSTLKSLQNALLDPDV-TITGVYGMGGLGKTTLVKEVARQVKKDKH-------------------FDEVVFAE 211 (1053)
Q Consensus 152 ~~~~~gR~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-------------------f~~~~wv~ 211 (1053)
..+++|.+..++.+.+.+..+++ ..+.++|+.|+||||+|+.+++...-... +....+++
T Consensus 15 ~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~~ 94 (363)
T PRK14961 15 FRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEID 94 (363)
T ss_pred hhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEec
Confidence 45688999999999888876554 46789999999999999999988641111 11112222
Q ss_pred EcCCcCHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHh----cCCcEEEEEcCCCCcc--chhhhcCCCCCCCCCcEE
Q 037851 212 VSDTPDIKKVQGELADQLGMQFDEESDVPGRARKLYARLQ----KENKILIILDNIWEDL--DLEKVGVPSGNDCRGCKV 285 (1053)
Q Consensus 212 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~i 285 (1053)
.+....+ +....+.+.+. .+++-++|+|+++... .++.+...+.......++
T Consensus 95 ~~~~~~v----------------------~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~f 152 (363)
T PRK14961 95 AASRTKV----------------------EEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKF 152 (363)
T ss_pred ccccCCH----------------------HHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEE
Confidence 1111111 11222222221 2456699999998664 355554444333345667
Q ss_pred EEEecCh-HHHHhhC--CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCchHHH
Q 037851 286 LLTARDR-HVLESIG--SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPIAIV 349 (1053)
Q Consensus 286 ivTtR~~-~v~~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~ 349 (1053)
|++|.+. .+..... ...+++.+++.++..+.+.+.+.... ..--++....|++.++|.|-.+.
T Consensus 153 Il~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g-~~i~~~al~~ia~~s~G~~R~al 218 (363)
T PRK14961 153 ILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKES-IDTDEYALKLIAYHAHGSMRDAL 218 (363)
T ss_pred EEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHH
Confidence 7766544 3333222 56889999999999998887664221 11124567889999999885443
No 58
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.39 E-value=6.7e-06 Score=90.13 Aligned_cols=174 Identities=14% Similarity=0.227 Sum_probs=112.8
Q ss_pred ccccchHHHHHHHHHHhcCCCe-eEEEEEcCCCCcHHHHHHHHHHHhh----hcCCCCeEEEEEE-cCCcCHHHHHHHHH
Q 037851 153 EAFESRMSTLKSLQNALLDPDV-TITGVYGMGGLGKTTLVKEVARQVK----KDKHFDEVVFAEV-SDTPDIKKVQGELA 226 (1053)
Q Consensus 153 ~~~~gR~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~----~~~~f~~~~wv~~-s~~~~~~~~~~~i~ 226 (1053)
.+++|.+..++.+.+++..++. ....++|+.|+||||+|+.+++..- ...++|...|... +....+.++ +++.
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~i-r~~~ 82 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDI-RNII 82 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHH-HHHH
Confidence 4567888889999999876654 5668999999999999999998752 2345666555442 222333332 2333
Q ss_pred HHhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCC--CccchhhhcCCCCCCCCCcEEEEEecChHHH-HhhC--CC
Q 037851 227 DQLGMQFDEESDVPGRARKLYARLQKENKILIILDNIW--EDLDLEKVGVPSGNDCRGCKVLLTARDRHVL-ESIG--SK 301 (1053)
Q Consensus 227 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~--~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~-~~~~--~~ 301 (1053)
+.+.... . .+++-++|+|+++ +...++.+...+.....++.+|++|.+.+.. .... ..
T Consensus 83 ~~~~~~p----------------~-~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~ 145 (313)
T PRK05564 83 EEVNKKP----------------Y-EGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQ 145 (313)
T ss_pred HHHhcCc----------------c-cCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhce
Confidence 3322110 1 2345556666654 4556777766665555688888888766422 2222 56
Q ss_pred cccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCchHHH
Q 037851 302 TLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPIAIV 349 (1053)
Q Consensus 302 ~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~ 349 (1053)
.+++.++++++....+.+..... -++.++.++..++|.|..+.
T Consensus 146 ~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 146 IYKLNRLSKEEIEKFISYKYNDI-----KEEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred eeeCCCcCHHHHHHHHHHHhcCC-----CHHHHHHHHHHcCCCHHHHH
Confidence 88999999999988887665311 12347788999999987554
No 59
>PLN03025 replication factor C subunit; Provisional
Probab=98.39 E-value=5.9e-06 Score=90.79 Aligned_cols=181 Identities=15% Similarity=0.118 Sum_probs=108.0
Q ss_pred CcccccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCC-eEEEEEEcCCcCHHHHHHHHHHHh
Q 037851 151 GYEAFESRMSTLKSLQNALLDPDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFD-EVVFAEVSDTPDIKKVQGELADQL 229 (1053)
Q Consensus 151 ~~~~~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~i~~~l 229 (1053)
...+++|.++.++.|.+++..++.+-+.++|++|+||||+|+.+++...- ..|. .++-++.+...+.. ..+++++.+
T Consensus 11 ~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~-~~~~~~~~eln~sd~~~~~-~vr~~i~~~ 88 (319)
T PLN03025 11 KLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLG-PNYKEAVLELNASDDRGID-VVRNKIKMF 88 (319)
T ss_pred CHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhc-ccCccceeeecccccccHH-HHHHHHHHH
Confidence 45678898888888888887766677889999999999999999998642 1222 22333333333322 222222221
Q ss_pred CCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCcc--chhhhcCCCCCCCCCcEEEEEecCh-HHHHhhC--CCccc
Q 037851 230 GMQFDEESDVPGRARKLYARLQKENKILIILDNIWEDL--DLEKVGVPSGNDCRGCKVLLTARDR-HVLESIG--SKTLR 304 (1053)
Q Consensus 230 ~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~iivTtR~~-~v~~~~~--~~~~~ 304 (1053)
..... ....++.-++|+|+++... ....+...+......+++|+++... .+..... ...++
T Consensus 89 ~~~~~--------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~ 154 (319)
T PLN03025 89 AQKKV--------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVR 154 (319)
T ss_pred Hhccc--------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhccc
Confidence 10000 0002456789999998652 2223322222223456777776543 2222111 45789
Q ss_pred ccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCchHH
Q 037851 305 IDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPIAI 348 (1053)
Q Consensus 305 l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai 348 (1053)
+.+++.++....+.+.+...... --++....|++.++|-.-.+
T Consensus 155 f~~l~~~~l~~~L~~i~~~egi~-i~~~~l~~i~~~~~gDlR~a 197 (319)
T PLN03025 155 FSRLSDQEILGRLMKVVEAEKVP-YVPEGLEAIIFTADGDMRQA 197 (319)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHH
Confidence 99999999999998877432211 11456788999999876433
No 60
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.36 E-value=8e-06 Score=93.87 Aligned_cols=177 Identities=12% Similarity=0.156 Sum_probs=110.8
Q ss_pred CcccccchHHHHHHHHHHhcCCC-eeEEEEEcCCCCcHHHHHHHHHHHhhhcC-------------------CCCeEEEE
Q 037851 151 GYEAFESRMSTLKSLQNALLDPD-VTITGVYGMGGLGKTTLVKEVARQVKKDK-------------------HFDEVVFA 210 (1053)
Q Consensus 151 ~~~~~~gR~~~~~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~f~~~~wv 210 (1053)
....++|.+...+.|.+++..++ ...+.++|+.|+||||+|+.+++...-.. .|.-++.+
T Consensus 13 tFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEI 92 (702)
T PRK14960 13 NFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEI 92 (702)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEe
Confidence 35678999999999999998665 35778999999999999999998763111 11112223
Q ss_pred EEcCCcCHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHH----hcCCcEEEEEcCCCCc--cchhhhcCCCCCCCCCcE
Q 037851 211 EVSDTPDIKKVQGELADQLGMQFDEESDVPGRARKLYARL----QKENKILIILDNIWED--LDLEKVGVPSGNDCRGCK 284 (1053)
Q Consensus 211 ~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l----~~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~ 284 (1053)
+.+....+.+ ++.+.... ..+++-++|+|+++.. .....+...+-....+.+
T Consensus 93 DAAs~~~Vdd----------------------IReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~ 150 (702)
T PRK14960 93 DAASRTKVED----------------------TRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVK 150 (702)
T ss_pred cccccCCHHH----------------------HHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcE
Confidence 2222222211 12222221 1356678999999865 344444433333334567
Q ss_pred EEEEecChH-HHHh-hC-CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCchHHHH
Q 037851 285 VLLTARDRH-VLES-IG-SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPIAIVT 350 (1053)
Q Consensus 285 iivTtR~~~-v~~~-~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~ 350 (1053)
+|++|.+.. +... .. ...+++++++.++..+.+.+.+..... .--.+....|++.++|.+..+..
T Consensus 151 FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI-~id~eAL~~IA~~S~GdLRdALn 218 (702)
T PRK14960 151 FLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQI-AADQDAIWQIAESAQGSLRDALS 218 (702)
T ss_pred EEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHH
Confidence 777776543 2222 12 578899999999999999887743221 12245678899999998754443
No 61
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.36 E-value=6.8e-06 Score=97.42 Aligned_cols=181 Identities=17% Similarity=0.202 Sum_probs=111.0
Q ss_pred cccccchHHHHHHHHHHhcCCCeeE-EEEEcCCCCcHHHHHHHHHHHhhhcCC-------------------CCeEEEEE
Q 037851 152 YEAFESRMSTLKSLQNALLDPDVTI-TGVYGMGGLGKTTLVKEVARQVKKDKH-------------------FDEVVFAE 211 (1053)
Q Consensus 152 ~~~~~gR~~~~~~l~~~l~~~~~~v-i~I~G~~GiGKTtLa~~v~~~~~~~~~-------------------f~~~~wv~ 211 (1053)
...++|.+..++.|.+++..+++.- +.++|+.|+||||+|+.+++...-... |.-+++++
T Consensus 15 FddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEid 94 (944)
T PRK14949 15 FEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEVD 94 (944)
T ss_pred HHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEec
Confidence 4578899999999999888766654 579999999999999999988642111 11122222
Q ss_pred EcCCcCHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCc--cchhhhcCCCCCCCCCcEEEEEe
Q 037851 212 VSDTPDIKKVQGELADQLGMQFDEESDVPGRARKLYARLQKENKILIILDNIWED--LDLEKVGVPSGNDCRGCKVLLTA 289 (1053)
Q Consensus 212 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTt 289 (1053)
.+....+..+ ++|.+.+ ...-..+++-++|+|++... ...+.+...+-......++|++|
T Consensus 95 Aas~~kVDdI-ReLie~v-----------------~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaT 156 (944)
T PRK14949 95 AASRTKVDDT-RELLDNV-----------------QYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLAT 156 (944)
T ss_pred cccccCHHHH-HHHHHHH-----------------HhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEEC
Confidence 2211111111 2222211 11111367789999999765 34455443333222345655555
Q ss_pred cC-hHHHHhhC--CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCchHHHHH
Q 037851 290 RD-RHVLESIG--SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPIAIVTL 351 (1053)
Q Consensus 290 R~-~~v~~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~ 351 (1053)
.+ ..+...+- ...|++.+++.++....+.+.+.... ...-.+....|++.++|.|--+..+
T Consensus 157 Te~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~Eg-I~~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 157 TDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQ-LPFEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred CCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 44 44433322 57899999999999999988764321 1222456888999999988644433
No 62
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.35 E-value=1.2e-05 Score=89.23 Aligned_cols=182 Identities=12% Similarity=0.120 Sum_probs=107.9
Q ss_pred CcccccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCe-EEEEEEcCCcCHHHHHHHHHHHh
Q 037851 151 GYEAFESRMSTLKSLQNALLDPDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDE-VVFAEVSDTPDIKKVQGELADQL 229 (1053)
Q Consensus 151 ~~~~~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~-~~wv~~s~~~~~~~~~~~i~~~l 229 (1053)
....++|+++.++.+.+++..+..+.+.++|..|+||||+|+.+++...... +.. .+-++.+.......+ .+.+..+
T Consensus 15 ~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~-~~~~~i~~~~~~~~~~~~~-~~~i~~~ 92 (319)
T PRK00440 15 TLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGED-WRENFLELNASDERGIDVI-RNKIKEF 92 (319)
T ss_pred cHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCc-cccceEEeccccccchHHH-HHHHHHH
Confidence 3456889999999999999877667789999999999999999999864322 211 222222222222211 1111111
Q ss_pred CCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCcc--chhhhcCCCCCCCCCcEEEEEecCh-HHHHhhC--CCccc
Q 037851 230 GMQFDEESDVPGRARKLYARLQKENKILIILDNIWEDL--DLEKVGVPSGNDCRGCKVLLTARDR-HVLESIG--SKTLR 304 (1053)
Q Consensus 230 ~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~iivTtR~~-~v~~~~~--~~~~~ 304 (1053)
....+ .....+-+|++|+++... ....+...+......+++|+++... .+..... ...++
T Consensus 93 ~~~~~---------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~ 157 (319)
T PRK00440 93 ARTAP---------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFR 157 (319)
T ss_pred HhcCC---------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheee
Confidence 10000 001345689999986542 2233332222223456777776432 2222111 45689
Q ss_pred ccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCchHHHH
Q 037851 305 IDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPIAIVT 350 (1053)
Q Consensus 305 l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~ 350 (1053)
+.+++.++....+.+.+..... .--++....+++.++|.+.-+..
T Consensus 158 ~~~l~~~ei~~~l~~~~~~~~~-~i~~~al~~l~~~~~gd~r~~~~ 202 (319)
T PRK00440 158 FSPLKKEAVAERLRYIAENEGI-EITDDALEAIYYVSEGDMRKAIN 202 (319)
T ss_pred eCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHH
Confidence 9999999999998887752221 12245688899999998865433
No 63
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.34 E-value=9.2e-06 Score=93.14 Aligned_cols=178 Identities=11% Similarity=0.140 Sum_probs=111.2
Q ss_pred CcccccchHHHHHHHHHHhcCCCe-eEEEEEcCCCCcHHHHHHHHHHHhhhcC------------------------CCC
Q 037851 151 GYEAFESRMSTLKSLQNALLDPDV-TITGVYGMGGLGKTTLVKEVARQVKKDK------------------------HFD 205 (1053)
Q Consensus 151 ~~~~~~gR~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~------------------------~f~ 205 (1053)
...+++|.+..++.|.+++..+++ ..+.++|..|+||||+|+.+++...-.+ .|.
T Consensus 14 tFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hp 93 (700)
T PRK12323 14 DFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFV 93 (700)
T ss_pred cHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCC
Confidence 356789999999999999986665 4568999999999999999998764210 011
Q ss_pred eEEEEEEcCCcCHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHh----cCCcEEEEEcCCCCc--cchhhhcCCCCCC
Q 037851 206 EVVFAEVSDTPDIKKVQGELADQLGMQFDEESDVPGRARKLYARLQ----KENKILIILDNIWED--LDLEKVGVPSGND 279 (1053)
Q Consensus 206 ~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~~~~~ 279 (1053)
-+++++.+....+ +.+..+.+.+. .++.-++|+|+++.. ..++.+...+-.-
T Consensus 94 DviEIdAas~~gV----------------------DdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEP 151 (700)
T PRK12323 94 DYIEMDAASNRGV----------------------DEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEP 151 (700)
T ss_pred cceEecccccCCH----------------------HHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccC
Confidence 1222222211111 12222322221 356679999999865 3455555544333
Q ss_pred CCCcEEE-EEecChHHHHhhC--CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCchHHHHH
Q 037851 280 CRGCKVL-LTARDRHVLESIG--SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPIAIVTL 351 (1053)
Q Consensus 280 ~~gs~ii-vTtR~~~v~~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~ 351 (1053)
..+.++| +||....+...+. ...+.++.++.++..+.+.+.+...... .-.+..+.|++.++|.|.....+
T Consensus 152 P~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~-~d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 152 PEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIA-HEVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred CCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHH
Confidence 3455555 4554444443322 5789999999999999998876422111 12345688999999999655443
No 64
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.33 E-value=9.5e-07 Score=91.60 Aligned_cols=93 Identities=17% Similarity=0.174 Sum_probs=64.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCC--cCHHHHHHHHHHHhCCCCCCCCChh------HHHH
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDT--PDIKKVQGELADQLGMQFDEESDVP------GRAR 244 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~~~~~~~~------~~~~ 244 (1053)
....++|+|++|+|||||++.+++..... +|+.++|+.+.+. .++.++++.+...+-...-+.+... ....
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 45689999999999999999999998754 8999999997776 7899999998333221111111110 1112
Q ss_pred HHHHHHhcCCcEEEEEcCCCCc
Q 037851 245 KLYARLQKENKILIILDNIWED 266 (1053)
Q Consensus 245 ~l~~~l~~~~~~LlvlDdv~~~ 266 (1053)
........+++.++++|++...
T Consensus 94 ~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHHCCCCEEEEEECHHHh
Confidence 2222223589999999999654
No 65
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=1.6e-07 Score=99.57 Aligned_cols=86 Identities=28% Similarity=0.420 Sum_probs=36.0
Q ss_pred cCccCcEEEcCCcccCCcc---ccCCCCCCcEEEccCCCCc---ccchhhhccCCCCeeeccCccccccc-CcchhcCCc
Q 037851 549 LLTDLRTLCLDGCELEDIR---VIGELKDLEILSLQGSKIE---QLPREIGQLTQLKLLDLSNCSKLKVI-APNVLSNLS 621 (1053)
Q Consensus 549 ~l~~Lr~L~L~~~~~~~~~---~i~~l~~L~~L~l~~~~l~---~lp~~i~~L~~L~~L~l~~~~~l~~~-~~~~l~~l~ 621 (1053)
+++.||...|.++.+..+. ....|++++.|||++|-+. .+-.-+..|++|+.|+++.| .+... ....-..+.
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~N-rl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSN-RLSNFISSNTTLLLS 197 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccc-cccCCccccchhhhh
Confidence 3344444444444433321 3344445555555554322 22223345555555555552 22211 111112344
Q ss_pred cCceeecccccccc
Q 037851 622 QLEELYMANCSIEW 635 (1053)
Q Consensus 622 ~L~~L~l~~~~~~~ 635 (1053)
+|+.|.++.|.+.|
T Consensus 198 ~lK~L~l~~CGls~ 211 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSW 211 (505)
T ss_pred hhheEEeccCCCCH
Confidence 55555555555543
No 66
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.31 E-value=1.8e-05 Score=86.95 Aligned_cols=198 Identities=15% Similarity=0.132 Sum_probs=115.4
Q ss_pred CCCCcccccchHHHHHHHHHHhcCCCe-eEEEEEcCCCCcHHHHHHHHHHHhhhcCC--CCeEEEEEEcCCcCHHHHHHH
Q 037851 148 SGKGYEAFESRMSTLKSLQNALLDPDV-TITGVYGMGGLGKTTLVKEVARQVKKDKH--FDEVVFAEVSDTPDIKKVQGE 224 (1053)
Q Consensus 148 ~~~~~~~~~gR~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~--f~~~~wv~~s~~~~~~~~~~~ 224 (1053)
.+.....++|.++..+.+...+..++. ..+.|+|+.|+||||+|+.+++..--... +... ............+.
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~ 94 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQ 94 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHH
Confidence 355667789999999999999886654 46889999999999999999998642110 1111 00111111123333
Q ss_pred HHHHhC-------CCCCCC------CChhHHHHHHHHHHh----cCCcEEEEEcCCCCcc--chhhhcCCCCCCCCCcE-
Q 037851 225 LADQLG-------MQFDEE------SDVPGRARKLYARLQ----KENKILIILDNIWEDL--DLEKVGVPSGNDCRGCK- 284 (1053)
Q Consensus 225 i~~~l~-------~~~~~~------~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~- 284 (1053)
+...-. ...+.. .-..+.+..+.+.+. .+++-++|+|+++... ..+.+...+.....+..
T Consensus 95 i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~f 174 (351)
T PRK09112 95 IAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALF 174 (351)
T ss_pred HHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceE
Confidence 322211 000000 001133344554443 3567799999997652 23333332222223344
Q ss_pred EEEEecChHHHHhhC--CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCchHHHHH
Q 037851 285 VLLTARDRHVLESIG--SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPIAIVTL 351 (1053)
Q Consensus 285 iivTtR~~~v~~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~ 351 (1053)
|++|++...+..... ...+++.+++.++..+++.+...... --++....|++.++|.|..+..+
T Consensus 175 iLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~---~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 175 ILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG---SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred EEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 445544433333222 56899999999999999987542211 12455788999999999866544
No 67
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.30 E-value=9.4e-05 Score=87.92 Aligned_cols=201 Identities=20% Similarity=0.184 Sum_probs=114.1
Q ss_pred cccccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCC---eEEEEEEcCC---cCHHHHHHHH
Q 037851 152 YEAFESRMSTLKSLQNALLDPDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFD---EVVFAEVSDT---PDIKKVQGEL 225 (1053)
Q Consensus 152 ~~~~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~---~~~wv~~s~~---~~~~~~~~~i 225 (1053)
.+.++|+...+..+.+.+..+....+.|+|++|+||||+|+.+++.......+. ..-|+.+... .+...+...+
T Consensus 153 ~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~l 232 (615)
T TIGR02903 153 FSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPL 232 (615)
T ss_pred HHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHHh
Confidence 446789999999888887766677899999999999999999998765433321 2234444321 1222221111
Q ss_pred ---------------HHHhCCCC----------------CCCCCh-hHHHHHHHHHHhcCCcEEEEEcCCCCc--cchhh
Q 037851 226 ---------------ADQLGMQF----------------DEESDV-PGRARKLYARLQKENKILIILDNIWED--LDLEK 271 (1053)
Q Consensus 226 ---------------~~~l~~~~----------------~~~~~~-~~~~~~l~~~l~~~~~~LlvlDdv~~~--~~~~~ 271 (1053)
+...+... ++.... ......+.+.+. ++++.++-|+.|.. ..|..
T Consensus 233 lg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le-~~~v~~~~~~~~~~~~~~~~~ 311 (615)
T TIGR02903 233 LGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLE-DKRVEFSSSYYDPDDPNVPKY 311 (615)
T ss_pred cCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHh-hCeEEeecceeccCCcccchh
Confidence 11111100 001111 134456666664 67788887766644 45766
Q ss_pred hcCCCCCCCCCcEEEE--EecChHHHH-hhC--CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCch
Q 037851 272 VGVPSGNDCRGCKVLL--TARDRHVLE-SIG--SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPI 346 (1053)
Q Consensus 272 l~~~~~~~~~gs~iiv--TtR~~~v~~-~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPl 346 (1053)
+...+....+...|++ ||++..... ... ...+.+.+++.+|.+.++++.+..... .--+++.+.|.+.+..-+-
T Consensus 312 ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v-~ls~eal~~L~~ys~~gRr 390 (615)
T TIGR02903 312 IKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINV-HLAAGVEELIARYTIEGRK 390 (615)
T ss_pred hhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHCCCcHHH
Confidence 6655555555554555 566543211 111 346788999999999999987753211 1113444455554443345
Q ss_pred HHHHHHHH
Q 037851 347 AIVTLAKA 354 (1053)
Q Consensus 347 ai~~~~~~ 354 (1053)
|+..++..
T Consensus 391 aln~L~~~ 398 (615)
T TIGR02903 391 AVNILADV 398 (615)
T ss_pred HHHHHHHH
Confidence 55444433
No 68
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.30 E-value=3e-06 Score=85.59 Aligned_cols=74 Identities=22% Similarity=0.329 Sum_probs=43.9
Q ss_pred cccchHHHHHHHHHHhc---CCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCc-----CHHHHHHHH
Q 037851 154 AFESRMSTLKSLQNALL---DPDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTP-----DIKKVQGEL 225 (1053)
Q Consensus 154 ~~~gR~~~~~~l~~~l~---~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-----~~~~~~~~i 225 (1053)
.|+||+++++++.+.+. ....+.+.|+|.+|+|||+|+++++........+ .+.+.+.... ....+++++
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l 78 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGY--VISINCDDSERNPYSPFRSALRQL 78 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT----EEEEEEETTTS-HHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCE--EEEEEEeccccchhhHHHHHHHHH
Confidence 47999999999999993 4557899999999999999999999998865333 3444444431 135555555
Q ss_pred HHHh
Q 037851 226 ADQL 229 (1053)
Q Consensus 226 ~~~l 229 (1053)
+.++
T Consensus 79 ~~~~ 82 (185)
T PF13191_consen 79 IDQL 82 (185)
T ss_dssp S---
T ss_pred HHHh
Confidence 5443
No 69
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.28 E-value=1.3e-05 Score=89.81 Aligned_cols=190 Identities=13% Similarity=0.080 Sum_probs=109.8
Q ss_pred CcccccchHHHHHHHHHHhcCCCee-EEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHh
Q 037851 151 GYEAFESRMSTLKSLQNALLDPDVT-ITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQL 229 (1053)
Q Consensus 151 ~~~~~~gR~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 229 (1053)
...+++|.+..+..|..++..+++. .+.++|+.|+||||+|+.+++...-...... ..+....+ ...+....
T Consensus 16 ~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~---~pCg~C~s----C~~i~~g~ 88 (484)
T PRK14956 16 FFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGN---EPCNECTS----CLEITKGI 88 (484)
T ss_pred CHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCc---cccCCCcH----HHHHHccC
Confidence 3567889998999998888877654 5799999999999999999987642111000 00111111 11111111
Q ss_pred CCCC---CC-CCChhHHHHHHHHHHh----cCCcEEEEEcCCCCc--cchhhhcCCCCCCCCCcEEE-EEecChHHHHhh
Q 037851 230 GMQF---DE-ESDVPGRARKLYARLQ----KENKILIILDNIWED--LDLEKVGVPSGNDCRGCKVL-LTARDRHVLESI 298 (1053)
Q Consensus 230 ~~~~---~~-~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~ii-vTtR~~~v~~~~ 298 (1053)
..+. +. .....+.+..+.+.+. .++.-++|+|+++.. ..++++...+-.......+| .||....+....
T Consensus 89 ~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI 168 (484)
T PRK14956 89 SSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETI 168 (484)
T ss_pred CccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHH
Confidence 1000 00 0000112223333222 356679999999865 44666654443322344544 444444443332
Q ss_pred C--CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCchHH
Q 037851 299 G--SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPIAI 348 (1053)
Q Consensus 299 ~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai 348 (1053)
. ...|.+.+++.++..+.+.+.+..... .--++....|++.++|.+.-+
T Consensus 169 ~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi-~~e~eAL~~Ia~~S~Gd~RdA 219 (484)
T PRK14956 169 LSRCQDFIFKKVPLSVLQDYSEKLCKIENV-QYDQEGLFWIAKKGDGSVRDM 219 (484)
T ss_pred HhhhheeeecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCChHHHH
Confidence 2 567999999999999988887643221 112466888999999988443
No 70
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.28 E-value=2.2e-05 Score=90.35 Aligned_cols=194 Identities=15% Similarity=0.089 Sum_probs=112.1
Q ss_pred cccccchHHHHHHHHHHhcCCCe-eEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhC
Q 037851 152 YEAFESRMSTLKSLQNALLDPDV-TITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLG 230 (1053)
Q Consensus 152 ~~~~~gR~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 230 (1053)
..+++|.+...+.|..++..++. ..+.++|+.|+||||+|+.+++...-.+.+...+|.|.+. ..+.....
T Consensus 13 ~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc--------~~i~~~~h 84 (504)
T PRK14963 13 FDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESC--------LAVRRGAH 84 (504)
T ss_pred HHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhh--------HHHhcCCC
Confidence 45688999888888888876655 4569999999999999999999875322222122222110 00000000
Q ss_pred C-----CCCCCCChhHHHHHHHHHHh----cCCcEEEEEcCCCCc--cchhhhcCCCCCCCCCcEEEEEecCh-HHHHhh
Q 037851 231 M-----QFDEESDVPGRARKLYARLQ----KENKILIILDNIWED--LDLEKVGVPSGNDCRGCKVLLTARDR-HVLESI 298 (1053)
Q Consensus 231 ~-----~~~~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtR~~-~v~~~~ 298 (1053)
. +....... ..+..+.+.+. .+++-++|+|+++.. ..+..+...+......+.+|++|... .+....
T Consensus 85 ~dv~el~~~~~~~v-d~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I 163 (504)
T PRK14963 85 PDVLEIDAASNNSV-EDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTI 163 (504)
T ss_pred CceEEecccccCCH-HHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHH
Confidence 0 00000011 11222322221 246678999999755 34555554444333455555555433 332222
Q ss_pred C--CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCchH-HHHHHHHH
Q 037851 299 G--SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPIA-IVTLAKAL 355 (1053)
Q Consensus 299 ~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPla-i~~~~~~L 355 (1053)
. ...+++.+++.++....+.+.+...... --++....|++.++|.+-- +..+-.++
T Consensus 164 ~SRc~~~~f~~ls~~el~~~L~~i~~~egi~-i~~~Al~~ia~~s~GdlR~aln~Lekl~ 222 (504)
T PRK14963 164 LSRTQHFRFRRLTEEEIAGKLRRLLEAEGRE-AEPEALQLVARLADGAMRDAESLLERLL 222 (504)
T ss_pred hcceEEEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 2 5688999999999999999877422211 1245688899999998854 44443433
No 71
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.27 E-value=2.3e-05 Score=89.83 Aligned_cols=175 Identities=14% Similarity=0.177 Sum_probs=109.3
Q ss_pred CcccccchHHHHHHHHHHhcCCCe-eEEEEEcCCCCcHHHHHHHHHHHhhhcCCC-----------------------Ce
Q 037851 151 GYEAFESRMSTLKSLQNALLDPDV-TITGVYGMGGLGKTTLVKEVARQVKKDKHF-----------------------DE 206 (1053)
Q Consensus 151 ~~~~~~gR~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f-----------------------~~ 206 (1053)
...+++|.+..+..+...+..++. ..+.++|+.|+||||+|+.+++...-.... .-
T Consensus 19 ~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~D 98 (507)
T PRK06645 19 NFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPD 98 (507)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCc
Confidence 345678998888888887765553 578899999999999999999986421110 01
Q ss_pred EEEEEEcCCcCHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHh----cCCcEEEEEcCCCCc--cchhhhcCCCCCCC
Q 037851 207 VVFAEVSDTPDIKKVQGELADQLGMQFDEESDVPGRARKLYARLQ----KENKILIILDNIWED--LDLEKVGVPSGNDC 280 (1053)
Q Consensus 207 ~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~ 280 (1053)
++.++......+.++ ..+.+... .+++-++|+|+++.. ..+..+...+....
T Consensus 99 v~eidaas~~~vd~I----------------------r~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp 156 (507)
T PRK06645 99 IIEIDAASKTSVDDI----------------------RRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPP 156 (507)
T ss_pred EEEeeccCCCCHHHH----------------------HHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcC
Confidence 122222222222221 22222211 256778999999875 44666654444333
Q ss_pred CCcEEEE-EecChHHHHhhC--CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCchHH
Q 037851 281 RGCKVLL-TARDRHVLESIG--SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPIAI 348 (1053)
Q Consensus 281 ~gs~iiv-TtR~~~v~~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai 348 (1053)
..+.+|+ ||+...+..... ...+++.+++.++....+.+.+...... --.+....|++.++|.+--+
T Consensus 157 ~~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~-ie~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 157 PHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLK-TDIEALRIIAYKSEGSARDA 226 (507)
T ss_pred CCEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHH
Confidence 4556554 555545544332 4678999999999999999888532211 12355778999999987444
No 72
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.26 E-value=2.4e-05 Score=90.11 Aligned_cols=184 Identities=16% Similarity=0.154 Sum_probs=109.6
Q ss_pred cccccchHHHHHHHHHHhcCCCe-eEEEEEcCCCCcHHHHHHHHHHHhhhc-------------------CCCCeEEEEE
Q 037851 152 YEAFESRMSTLKSLQNALLDPDV-TITGVYGMGGLGKTTLVKEVARQVKKD-------------------KHFDEVVFAE 211 (1053)
Q Consensus 152 ~~~~~gR~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~-------------------~~f~~~~wv~ 211 (1053)
...++|.+..++.+..++..+++ ..+.++|+.|+||||+|+.+++...-. +.|.-.++++
T Consensus 15 f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieid 94 (546)
T PRK14957 15 FAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEID 94 (546)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEee
Confidence 45688999999999988876554 457899999999999999999875311 1122233333
Q ss_pred EcCCcCHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCc--cchhhhcCCCCCCCCCcEEEE-E
Q 037851 212 VSDTPDIKKVQGELADQLGMQFDEESDVPGRARKLYARLQKENKILIILDNIWED--LDLEKVGVPSGNDCRGCKVLL-T 288 (1053)
Q Consensus 212 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iiv-T 288 (1053)
......+.++ +++++. +...-..+++-++|+|+++.. ..++.+...+-.....+.+|+ |
T Consensus 95 aas~~gvd~i-r~ii~~-----------------~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 95 AASRTGVEET-KEILDN-----------------IQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred cccccCHHHH-HHHHHH-----------------HHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEE
Confidence 3222222211 112211 111111356779999999755 334444444333334555554 5
Q ss_pred ecChHHHHhhC--CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCc-hHHHHHHHH
Q 037851 289 ARDRHVLESIG--SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLP-IAIVTLAKA 354 (1053)
Q Consensus 289 tR~~~v~~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlP-lai~~~~~~ 354 (1053)
|....+..... ...+++.+++.++....+.+.+.... ...-++....|++.++|.+ .|+..+-.+
T Consensus 157 td~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~eg-i~~e~~Al~~Ia~~s~GdlR~alnlLek~ 224 (546)
T PRK14957 157 TDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKEN-INSDEQSLEYIAYHAKGSLRDALSLLDQA 224 (546)
T ss_pred CChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 44333333322 57889999999999888887654221 1222455788999999966 455444433
No 73
>PRK08727 hypothetical protein; Validated
Probab=98.23 E-value=1.6e-05 Score=82.65 Aligned_cols=167 Identities=16% Similarity=0.145 Sum_probs=97.8
Q ss_pred ccccchH-HHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhCC
Q 037851 153 EAFESRM-STLKSLQNALLDPDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLGM 231 (1053)
Q Consensus 153 ~~~~gR~-~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 231 (1053)
+.|++.. ..+..+...........+.|+|..|+|||.||+.+++....+ ...+.|+++.+ ....+
T Consensus 19 ~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~--~~~~~y~~~~~------~~~~~------ 84 (233)
T PRK08727 19 DSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQA--GRSSAYLPLQA------AAGRL------ 84 (233)
T ss_pred hhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEeHHH------hhhhH------
Confidence 3454333 233333333333334569999999999999999999987643 23556776432 11111
Q ss_pred CCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCcc---chhh-hcCCCCC-CCCCcEEEEEecCh---------HHHHh
Q 037851 232 QFDEESDVPGRARKLYARLQKENKILIILDNIWEDL---DLEK-VGVPSGN-DCRGCKVLLTARDR---------HVLES 297 (1053)
Q Consensus 232 ~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~---~~~~-l~~~~~~-~~~gs~iivTtR~~---------~v~~~ 297 (1053)
....+.+ .+.-+||+||+.... .|.. +...+.. ...|..||+|++.. ++...
T Consensus 85 ------------~~~~~~l--~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SR 150 (233)
T PRK08727 85 ------------RDALEAL--EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSR 150 (233)
T ss_pred ------------HHHHHHH--hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHH
Confidence 1122333 244689999997442 2322 2111111 12356799999853 22223
Q ss_pred hC-CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCchHH
Q 037851 298 IG-SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPIAI 348 (1053)
Q Consensus 298 ~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai 348 (1053)
+. ...+++++++.++-..++++++.... -.--+++..-|++.++|-.-.+
T Consensus 151 l~~~~~~~l~~~~~e~~~~iL~~~a~~~~-l~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 151 LAQCIRIGLPVLDDVARAAVLRERAQRRG-LALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HhcCceEEecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhCCCCHHHH
Confidence 33 45889999999999999998774211 1222466778888888765444
No 74
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.22 E-value=2e-05 Score=82.11 Aligned_cols=162 Identities=14% Similarity=0.097 Sum_probs=98.2
Q ss_pred HHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhCCCCCCCCCh
Q 037851 160 STLKSLQNALLDPDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLGMQFDEESDV 239 (1053)
Q Consensus 160 ~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~ 239 (1053)
..+..+.++......+.+.|+|+.|+|||+||+.+++..... -..+.|+++.....
T Consensus 31 ~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~--~~~v~y~~~~~~~~---------------------- 86 (235)
T PRK08084 31 SLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQR--GRAVGYVPLDKRAW---------------------- 86 (235)
T ss_pred HHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEEHHHHhh----------------------
Confidence 344555555444455789999999999999999999986632 23566776643110
Q ss_pred hHHHHHHHHHHhcCCcEEEEEcCCCCc---cchhhh----cCCCCCCCCCcEEEEEecChH---------HHHhhC-CCc
Q 037851 240 PGRARKLYARLQKENKILIILDNIWED---LDLEKV----GVPSGNDCRGCKVLLTARDRH---------VLESIG-SKT 302 (1053)
Q Consensus 240 ~~~~~~l~~~l~~~~~~LlvlDdv~~~---~~~~~l----~~~~~~~~~gs~iivTtR~~~---------v~~~~~-~~~ 302 (1053)
....+.+.+. +.-+|++||+... .+|+.. ...... ..+.++|+||+... +...+. ..+
T Consensus 87 --~~~~~~~~~~--~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e-~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~ 161 (235)
T PRK08084 87 --FVPEVLEGME--QLSLVCIDNIECIAGDELWEMAIFDLYNRILE-SGRTRLLITGDRPPRQLNLGLPDLASRLDWGQI 161 (235)
T ss_pred --hhHHHHHHhh--hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHH-cCCCeEEEeCCCChHHcCcccHHHHHHHhCCce
Confidence 0011222221 1247899999653 334321 111111 11247899987552 223333 578
Q ss_pred ccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCchHHHHH
Q 037851 303 LRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPIAIVTL 351 (1053)
Q Consensus 303 ~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~ 351 (1053)
+++++++.++-.+++++++... .-.--+++..-|++.+.|..-++..+
T Consensus 162 ~~l~~~~~~~~~~~l~~~a~~~-~~~l~~~v~~~L~~~~~~d~r~l~~~ 209 (235)
T PRK08084 162 YKLQPLSDEEKLQALQLRARLR-GFELPEDVGRFLLKRLDREMRTLFMT 209 (235)
T ss_pred eeecCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHhhcCCHHHHHHH
Confidence 9999999999999998866432 12223577888888888765544433
No 75
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.22 E-value=4.7e-05 Score=79.37 Aligned_cols=191 Identities=15% Similarity=0.154 Sum_probs=117.8
Q ss_pred HHHHHHHHHhcC---CCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCC----CeEEEEEEcCCcCHHHHHHHHHHHhCCC
Q 037851 160 STLKSLQNALLD---PDVTITGVYGMGGLGKTTLVKEVARQVKKDKHF----DEVVFAEVSDTPDIKKVQGELADQLGMQ 232 (1053)
Q Consensus 160 ~~~~~l~~~l~~---~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f----~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 232 (1053)
+.++.+.+.+.. .+.+-+.|||.+|+|||++++.+.+.......- -.++.|.....++...++..|+.+++..
T Consensus 44 ~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP 123 (302)
T PF05621_consen 44 EALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAP 123 (302)
T ss_pred HHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcc
Confidence 345555555553 356789999999999999999999876532111 1477888889999999999999999988
Q ss_pred CCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCcc-----chhhh---cCCCCCCCCCcEEEEEecChHHHHhh----C-
Q 037851 233 FDEESDVPGRARKLYARLQKENKILIILDNIWEDL-----DLEKV---GVPSGNDCRGCKVLLTARDRHVLESI----G- 299 (1053)
Q Consensus 233 ~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~-----~~~~l---~~~~~~~~~gs~iivTtR~~~v~~~~----~- 299 (1053)
...............+.+..-+--+||+|++.+.- +-..+ ...+...-.=+-|.+-|++..-+-.. .
T Consensus 124 ~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~ 203 (302)
T PF05621_consen 124 YRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLAS 203 (302)
T ss_pred cCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHHh
Confidence 76655554444444455555567789999997641 11111 11122222334566777654333211 1
Q ss_pred -CCcccccCCCHH-HHHHHHHHHhC----CCCCCccchHHHHHHHHHhCCCchHHHH
Q 037851 300 -SKTLRIDVLNDE-EAWTLFKKMTG----DCAEKGELKSIATDVAKECGGLPIAIVT 350 (1053)
Q Consensus 300 -~~~~~l~~L~~~-~~~~lf~~~~~----~~~~~~~~~~~~~~i~~~~~GlPlai~~ 350 (1053)
...+.+.....+ |...|+..... .....-..+++++.|...++|+.--+..
T Consensus 204 RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~ 260 (302)
T PF05621_consen 204 RFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSR 260 (302)
T ss_pred ccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHH
Confidence 345555554433 44455443321 1112223467899999999998754433
No 76
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.21 E-value=1.3e-05 Score=90.02 Aligned_cols=175 Identities=17% Similarity=0.230 Sum_probs=103.7
Q ss_pred CCCCcccccchHHHHHHHHHHhc----C---------CCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcC
Q 037851 148 SGKGYEAFESRMSTLKSLQNALL----D---------PDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSD 214 (1053)
Q Consensus 148 ~~~~~~~~~gR~~~~~~l~~~l~----~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~ 214 (1053)
|......+.|+++.++++.+.+. . ...+-+.++|++|+|||++|+.+++... ..| +.+..
T Consensus 117 p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~--~~~-----~~v~~ 189 (364)
T TIGR01242 117 PNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN--ATF-----IRVVG 189 (364)
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCC--CCE-----Eecch
Confidence 34445678899999999887663 1 1245689999999999999999999765 222 22221
Q ss_pred CcCHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCcc----------------chhhhcCCCC-
Q 037851 215 TPDIKKVQGELADQLGMQFDEESDVPGRARKLYARLQKENKILIILDNIWEDL----------------DLEKVGVPSG- 277 (1053)
Q Consensus 215 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~----------------~~~~l~~~~~- 277 (1053)
..+.... .+ ........+.+......+.+|++||++... .+..+...+.
T Consensus 190 ----~~l~~~~---~g-------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~ 255 (364)
T TIGR01242 190 ----SELVRKY---IG-------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDG 255 (364)
T ss_pred ----HHHHHHh---hh-------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhC
Confidence 1111111 11 011223333333334567899999987531 1112221111
Q ss_pred -CCCCCcEEEEEecChHHHHh-----hC-CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCc
Q 037851 278 -NDCRGCKVLLTARDRHVLES-----IG-SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLP 345 (1053)
Q Consensus 278 -~~~~gs~iivTtR~~~v~~~-----~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlP 345 (1053)
....+.+||.||...+.... .. ...+.+...+.++..++|+.++.......+. ....+++.+.|..
T Consensus 256 ~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~--~~~~la~~t~g~s 328 (364)
T TIGR01242 256 FDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDV--DLEAIAKMTEGAS 328 (364)
T ss_pred CCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccC--CHHHHHHHcCCCC
Confidence 11246688888875532221 12 4578999999999999999887543222211 1466778887764
No 77
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.21 E-value=4e-06 Score=90.28 Aligned_cols=101 Identities=15% Similarity=0.164 Sum_probs=66.9
Q ss_pred HHHHhc-CCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCc--CHHHHHHHHHHHhCCCCCCCCChhH
Q 037851 165 LQNALL-DPDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTP--DIKKVQGELADQLGMQFDEESDVPG 241 (1053)
Q Consensus 165 l~~~l~-~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~~~~~~~~~ 241 (1053)
+++.+. =+...-..|+|++|+||||||+.+|+....+ +|+.++||.+.+.. ++.++++.+...+-....+.+....
T Consensus 159 vID~l~PIGkGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~ 237 (416)
T PRK09376 159 IIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERH 237 (416)
T ss_pred eeeeecccccCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHH
Confidence 444443 2344678899999999999999999998865 89999999999887 7778887776322111111111100
Q ss_pred -----HHHHHHHHH-hcCCcEEEEEcCCCCc
Q 037851 242 -----RARKLYARL-QKENKILIILDNIWED 266 (1053)
Q Consensus 242 -----~~~~l~~~l-~~~~~~LlvlDdv~~~ 266 (1053)
.+-...+++ ..+++++|++|++...
T Consensus 238 ~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR~ 268 (416)
T PRK09376 238 VQVAEMVIEKAKRLVEHGKDVVILLDSITRL 268 (416)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEEChHHH
Confidence 111122222 2589999999999654
No 78
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.21 E-value=3.9e-05 Score=87.67 Aligned_cols=186 Identities=15% Similarity=0.175 Sum_probs=109.9
Q ss_pred CcccccchHHHHHHHHHHhcCCCe-eEEEEEcCCCCcHHHHHHHHHHHhhhcCC-------------------CCeEEEE
Q 037851 151 GYEAFESRMSTLKSLQNALLDPDV-TITGVYGMGGLGKTTLVKEVARQVKKDKH-------------------FDEVVFA 210 (1053)
Q Consensus 151 ~~~~~~gR~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-------------------f~~~~wv 210 (1053)
....++|.+.....+...+..+++ ..+.++|++|+||||+|+.+++...-... +..+..+
T Consensus 12 ~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el 91 (472)
T PRK14962 12 TFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIEL 91 (472)
T ss_pred CHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEE
Confidence 345788998888888888876665 45789999999999999999987542110 1112233
Q ss_pred EEcCCcCHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCc--cchhhhcCCCCCCCCCcEEEEE
Q 037851 211 EVSDTPDIKKVQGELADQLGMQFDEESDVPGRARKLYARLQKENKILIILDNIWED--LDLEKVGVPSGNDCRGCKVLLT 288 (1053)
Q Consensus 211 ~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivT 288 (1053)
+.+......++ ++|.+.... ... .+++-++|+|+++.. .....+...+........+|++
T Consensus 92 ~aa~~~gid~i-R~i~~~~~~----------------~p~-~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ila 153 (472)
T PRK14962 92 DAASNRGIDEI-RKIRDAVGY----------------RPM-EGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLA 153 (472)
T ss_pred eCcccCCHHHH-HHHHHHHhh----------------Chh-cCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 33222222222 122221110 001 246679999999754 2334443333322233444444
Q ss_pred ecC-hHHHHhhC--CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCC-chHHHHHHHHH
Q 037851 289 ARD-RHVLESIG--SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGL-PIAIVTLAKAL 355 (1053)
Q Consensus 289 tR~-~~v~~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~Gl-Plai~~~~~~L 355 (1053)
|.+ ..+..... ...+++.+++.++....+.+.+..... .--++....|++.++|- +.|+..+-.+.
T Consensus 154 ttn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi-~i~~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 154 TTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGI-EIDREALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred eCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 443 33433322 567899999999999999887742111 11245678889888654 67777766544
No 79
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.21 E-value=1.6e-05 Score=95.06 Aligned_cols=170 Identities=20% Similarity=0.274 Sum_probs=100.2
Q ss_pred CCcccccchHHHHH---HHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHH
Q 037851 150 KGYEAFESRMSTLK---SLQNALLDPDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELA 226 (1053)
Q Consensus 150 ~~~~~~~gR~~~~~---~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 226 (1053)
....+|+|++..+. .+.+++..++...+.++|++|+||||+|+.+++... ..|. .++.+. ....++ +
T Consensus 25 ~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~--~~f~---~lna~~-~~i~di-r--- 94 (725)
T PRK13341 25 RTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTR--AHFS---SLNAVL-AGVKDL-R--- 94 (725)
T ss_pred CcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhc--Ccce---eehhhh-hhhHHH-H---
Confidence 33456888887764 455666666777889999999999999999998764 3331 121111 011111 1
Q ss_pred HHhCCCCCCCCChhHHHHHHHHHHh-cCCcEEEEEcCCCCc--cchhhhcCCCCCCCCCcEEEE--EecChH--HHHhh-
Q 037851 227 DQLGMQFDEESDVPGRARKLYARLQ-KENKILIILDNIWED--LDLEKVGVPSGNDCRGCKVLL--TARDRH--VLESI- 298 (1053)
Q Consensus 227 ~~l~~~~~~~~~~~~~~~~l~~~l~-~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iiv--TtR~~~--v~~~~- 298 (1053)
.......+.+. .+++.+|||||++.. .+.+.+...+. .|+.++| ||.+.. +....
T Consensus 95 --------------~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~aL~ 157 (725)
T PRK13341 95 --------------AEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNKALV 157 (725)
T ss_pred --------------HHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhhHhh
Confidence 11111111121 246789999999754 34445543222 3555555 344432 11211
Q ss_pred -CCCcccccCCCHHHHHHHHHHHhCC------CCCCccchHHHHHHHHHhCCCch
Q 037851 299 -GSKTLRIDVLNDEEAWTLFKKMTGD------CAEKGELKSIATDVAKECGGLPI 346 (1053)
Q Consensus 299 -~~~~~~l~~L~~~~~~~lf~~~~~~------~~~~~~~~~~~~~i~~~~~GlPl 346 (1053)
....+.+++++.++...++++.+.. .....--++....|++.+.|.--
T Consensus 158 SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 158 SRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred ccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 1467899999999999999877641 11112235667888888888643
No 80
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.21 E-value=8.1e-06 Score=80.87 Aligned_cols=176 Identities=17% Similarity=0.183 Sum_probs=92.6
Q ss_pred CCcccccchHHHHHHHHHHhc-----CCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHH
Q 037851 150 KGYEAFESRMSTLKSLQNALL-----DPDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGE 224 (1053)
Q Consensus 150 ~~~~~~~gR~~~~~~l~~~l~-----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 224 (1053)
....+|+|.+..++.+.-++. .....-+.+||++|+||||||+.+++.... .| .+.+...-....++
T Consensus 21 ~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~--~~---~~~sg~~i~k~~dl--- 92 (233)
T PF05496_consen 21 KSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGV--NF---KITSGPAIEKAGDL--- 92 (233)
T ss_dssp SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT----E---EEEECCC--SCHHH---
T ss_pred CCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCC--Ce---EeccchhhhhHHHH---
Confidence 346789999888877543332 345678899999999999999999998773 23 12222111111111
Q ss_pred HHHHhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCcc--ch-------hhhcCCC-CCCCC-----------Cc
Q 037851 225 LADQLGMQFDEESDVPGRARKLYARLQKENKILIILDNIWEDL--DL-------EKVGVPS-GNDCR-----------GC 283 (1053)
Q Consensus 225 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--~~-------~~l~~~~-~~~~~-----------gs 283 (1053)
..+...+ +++-+|++|++.... +- +.....+ ...++ =+
T Consensus 93 -------------------~~il~~l--~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FT 151 (233)
T PF05496_consen 93 -------------------AAILTNL--KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFT 151 (233)
T ss_dssp -------------------HHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----E
T ss_pred -------------------HHHHHhc--CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCce
Confidence 1122222 244577778876541 11 1110000 00111 12
Q ss_pred EEEEEecChHHHHhhC---CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCchHHHHHHHHH
Q 037851 284 KVLLTARDRHVLESIG---SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPIAIVTLAKAL 355 (1053)
Q Consensus 284 ~iivTtR~~~v~~~~~---~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~L 355 (1053)
-|=.|||...+..... ....+++..+.+|-.++..+.+....- .--++.+.+|++++.|-|--+.-+-+..
T Consensus 152 ligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i-~i~~~~~~~Ia~rsrGtPRiAnrll~rv 225 (233)
T PF05496_consen 152 LIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNI-EIDEDAAEEIARRSRGTPRIANRLLRRV 225 (233)
T ss_dssp EEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT--EE-HHHHHHHHHCTTTSHHHHHHHHHHH
T ss_pred EeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCC-CcCHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 3456888765544333 234589999999999999887753221 2225679999999999996655444443
No 81
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=3.9e-07 Score=96.61 Aligned_cols=134 Identities=18% Similarity=0.170 Sum_probs=89.6
Q ss_pred ccCCCceeEEeecCccccC---CCcccccCccCcEEEcCCcccCCc---cccCCCCCCcEEEccCCCCc--ccchhhhcc
Q 037851 524 FIGTPKLKVLDFTRMRLLS---LPSSIHLLTDLRTLCLDGCELEDI---RVIGELKDLEILSLQGSKIE--QLPREIGQL 595 (1053)
Q Consensus 524 ~~~~~~Lr~L~l~~~~~~~---lp~~i~~l~~Lr~L~L~~~~~~~~---~~i~~l~~L~~L~l~~~~l~--~lp~~i~~L 595 (1053)
...++++|.||+|+|-+.. +-.....|++|+.|+|+.|++..+ ..-..+.+|+.|.|+.|++. .+-.-.-.+
T Consensus 142 ~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~f 221 (505)
T KOG3207|consen 142 SKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTF 221 (505)
T ss_pred hhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhC
Confidence 3568888999999887763 334456888899999999987664 23347788899999998877 444445677
Q ss_pred CCCCeeeccCcccccccCcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCCeEEEEeccC
Q 037851 596 TQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLEINILDA 668 (1053)
Q Consensus 596 ~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~ 668 (1053)
++|..|++..|..+... ......+..|++|++++|.+.. .......+.++.|+.|+++.+++
T Consensus 222 Psl~~L~L~~N~~~~~~-~~~~~i~~~L~~LdLs~N~li~----------~~~~~~~~~l~~L~~Lnls~tgi 283 (505)
T KOG3207|consen 222 PSLEVLYLEANEIILIK-ATSTKILQTLQELDLSNNNLID----------FDQGYKVGTLPGLNQLNLSSTGI 283 (505)
T ss_pred CcHHHhhhhccccccee-cchhhhhhHHhhccccCCcccc----------cccccccccccchhhhhccccCc
Confidence 88888888885322221 1113457788888888887631 12233455666666666665543
No 82
>PRK09087 hypothetical protein; Validated
Probab=98.19 E-value=4.4e-05 Score=78.69 Aligned_cols=139 Identities=14% Similarity=0.101 Sum_probs=86.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhcC
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLGMQFDEESDVPGRARKLYARLQKE 253 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 253 (1053)
.+.+.|+|+.|+|||+|++.+++... ..|++.. .+..++. ..+. +
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-------~~~i~~~------~~~~~~~---------------------~~~~-~ 88 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-------ALLIHPN------EIGSDAA---------------------NAAA-E 88 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-------CEEecHH------HcchHHH---------------------Hhhh-c
Confidence 46799999999999999998887643 1233332 1111111 1111 1
Q ss_pred CcEEEEEcCCCCc----cchhhhcCCCCCCCCCcEEEEEecC---------hHHHHhhC-CCcccccCCCHHHHHHHHHH
Q 037851 254 NKILIILDNIWED----LDLEKVGVPSGNDCRGCKVLLTARD---------RHVLESIG-SKTLRIDVLNDEEAWTLFKK 319 (1053)
Q Consensus 254 ~~~LlvlDdv~~~----~~~~~l~~~~~~~~~gs~iivTtR~---------~~v~~~~~-~~~~~l~~L~~~~~~~lf~~ 319 (1053)
-+|++||+... ..+..+..... ..|..||+|++. ++....+. ...+++++++.++-.+++++
T Consensus 89 --~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~ 164 (226)
T PRK09087 89 --GPVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFK 164 (226)
T ss_pred --CeEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHH
Confidence 27888999643 12222222211 236678888873 23333344 67899999999999999998
Q ss_pred HhCCCCCCccchHHHHHHHHHhCCCchHHHHHH
Q 037851 320 MTGDCAEKGELKSIATDVAKECGGLPIAIVTLA 352 (1053)
Q Consensus 320 ~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~ 352 (1053)
.+... .-.--+++..-|++.+.|..-++..+-
T Consensus 165 ~~~~~-~~~l~~ev~~~La~~~~r~~~~l~~~l 196 (226)
T PRK09087 165 LFADR-QLYVDPHVVYYLVSRMERSLFAAQTIV 196 (226)
T ss_pred HHHHc-CCCCCHHHHHHHHHHhhhhHHHHHHHH
Confidence 88532 112235778888998888877666433
No 83
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.18 E-value=1.5e-06 Score=68.93 Aligned_cols=59 Identities=37% Similarity=0.599 Sum_probs=42.5
Q ss_pred CCCcEEEccCCCCcccch-hhhccCCCCeeeccCcccccccCcchhcCCccCceeeccccc
Q 037851 573 KDLEILSLQGSKIEQLPR-EIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCS 632 (1053)
Q Consensus 573 ~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 632 (1053)
++|++|++++|.+..+|. .+..+++|++|++++ +.+..+++..+.++++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETS-SSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcCCc
Confidence 367777777777777764 456777777777776 56777777777777777777777764
No 84
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.17 E-value=1.5e-06 Score=99.42 Aligned_cols=127 Identities=32% Similarity=0.478 Sum_probs=99.7
Q ss_pred CCCceeEEeecCccccCCCcccccCc-cCcEEEcCCcccCCc-cccCCCCCCcEEEccCCCCcccchhhhccCCCCeeec
Q 037851 526 GTPKLKVLDFTRMRLLSLPSSIHLLT-DLRTLCLDGCELEDI-RVIGELKDLEILSLQGSKIEQLPREIGQLTQLKLLDL 603 (1053)
Q Consensus 526 ~~~~Lr~L~l~~~~~~~lp~~i~~l~-~Lr~L~L~~~~~~~~-~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l 603 (1053)
....+..|++.++.+..+|+....+. +|+.|++++|.+... ..++.+++|+.|+++.|.+.++|...+.+.+|+.|++
T Consensus 114 ~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 114 ELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDL 193 (394)
T ss_pred cccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheec
Confidence 45678999999999999988888885 999999999998885 6889999999999999999999988888999999999
Q ss_pred cCcccccccCcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCCeEEEEec
Q 037851 604 SNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLEINIL 666 (1053)
Q Consensus 604 ~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~ 666 (1053)
++ +.+..+|+. ++.+..|++|.+.+|.. ...+..+.++.++..|.+..+
T Consensus 194 s~-N~i~~l~~~-~~~~~~L~~l~~~~N~~------------~~~~~~~~~~~~l~~l~l~~n 242 (394)
T COG4886 194 SG-NKISDLPPE-IELLSALEELDLSNNSI------------IELLSSLSNLKNLSGLELSNN 242 (394)
T ss_pred cC-CccccCchh-hhhhhhhhhhhhcCCcc------------eecchhhhhcccccccccCCc
Confidence 98 678888654 45677799998888742 234455556666655554433
No 85
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.17 E-value=2.8e-05 Score=78.37 Aligned_cols=158 Identities=18% Similarity=0.167 Sum_probs=93.7
Q ss_pred HHHHHhcCCCe-eEEEEEcCCCCcHHHHHHHHHHHhhhc--------------------CCCCeEEEEEEcC-CcCHHHH
Q 037851 164 SLQNALLDPDV-TITGVYGMGGLGKTTLVKEVARQVKKD--------------------KHFDEVVFAEVSD-TPDIKKV 221 (1053)
Q Consensus 164 ~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~--------------------~~f~~~~wv~~s~-~~~~~~~ 221 (1053)
.+.+.+..++. ..+.++|+.|+||||+|+.+.+...-. .+.|. .++.... .... +.
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~-~~~~~~~~~~~~-~~ 80 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDL-HRLEPEGQSIKV-DQ 80 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcE-EEeccccCcCCH-HH
Confidence 34455555555 678899999999999999999886432 11122 1221111 1111 11
Q ss_pred HHHHHHHhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCc--cchhhhcCCCCCCCCCcEEEEEecCh-HHHHhh
Q 037851 222 QGELADQLGMQFDEESDVPGRARKLYARLQKENKILIILDNIWED--LDLEKVGVPSGNDCRGCKVLLTARDR-HVLESI 298 (1053)
Q Consensus 222 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtR~~-~v~~~~ 298 (1053)
.+++.+.+.... . .+.+-++|+||++.. ...+.+...+......+.+|++|++. .+....
T Consensus 81 i~~i~~~~~~~~----------------~-~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i 143 (188)
T TIGR00678 81 VRELVEFLSRTP----------------Q-ESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTI 143 (188)
T ss_pred HHHHHHHHccCc----------------c-cCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHH
Confidence 122222221100 0 256678999999764 23444444443333456677777654 222222
Q ss_pred C--CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCchH
Q 037851 299 G--SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPIA 347 (1053)
Q Consensus 299 ~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPla 347 (1053)
. ...+++.+++.++..+.+.+. + .+ ++.+..|++.++|.|..
T Consensus 144 ~sr~~~~~~~~~~~~~~~~~l~~~-g--i~----~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 144 RSRCQVLPFPPLSEEALLQWLIRQ-G--IS----EEAAELLLALAGGSPGA 187 (188)
T ss_pred HhhcEEeeCCCCCHHHHHHHHHHc-C--CC----HHHHHHHHHHcCCCccc
Confidence 2 568899999999999998877 2 11 45688999999998853
No 86
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.16 E-value=4.1e-05 Score=86.91 Aligned_cols=179 Identities=9% Similarity=0.119 Sum_probs=110.9
Q ss_pred CcccccchHHHHHHHHHHhcCCCee-EEEEEcCCCCcHHHHHHHHHHHhhhc-------------------CCCCeEEEE
Q 037851 151 GYEAFESRMSTLKSLQNALLDPDVT-ITGVYGMGGLGKTTLVKEVARQVKKD-------------------KHFDEVVFA 210 (1053)
Q Consensus 151 ~~~~~~gR~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~-------------------~~f~~~~wv 210 (1053)
...+++|.+..++.+.+++..+++. .+.++|+.|+||||+|+.+++..--. +.+.-++.+
T Consensus 11 ~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~ei 90 (491)
T PRK14964 11 SFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEI 90 (491)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEE
Confidence 3457889998888888888766655 78899999999999999998754210 112223445
Q ss_pred EEcCCcCHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCc--cchhhhcCCCCCCCCCcEEEEE
Q 037851 211 EVSDTPDIKKVQGELADQLGMQFDEESDVPGRARKLYARLQKENKILIILDNIWED--LDLEKVGVPSGNDCRGCKVLLT 288 (1053)
Q Consensus 211 ~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivT 288 (1053)
+.+....+.++ +++.+..... -. .+++-++|+|+++.. ...+.+...+-...+.+++|++
T Consensus 91 daas~~~vddI-R~Iie~~~~~----------------P~-~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIla 152 (491)
T PRK14964 91 DAASNTSVDDI-KVILENSCYL----------------PI-SSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILA 152 (491)
T ss_pred ecccCCCHHHH-HHHHHHHHhc----------------cc-cCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEE
Confidence 54443333332 2222221100 00 245668999999754 2344444333333345666655
Q ss_pred e-cChHHHHhhC--CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCchHH
Q 037851 289 A-RDRHVLESIG--SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPIAI 348 (1053)
Q Consensus 289 t-R~~~v~~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai 348 (1053)
| ....+...+. ...+++.+++.++....+.+.+..... .--++....|++.++|.+..+
T Consensus 153 tte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi-~i~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 153 TTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENI-EHDEESLKLIAENSSGSMRNA 214 (491)
T ss_pred eCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHH
Confidence 5 4444444332 678899999999999999888753221 112455778999999977543
No 87
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.16 E-value=4.8e-05 Score=84.00 Aligned_cols=198 Identities=16% Similarity=0.070 Sum_probs=113.2
Q ss_pred CCCcccccchHHHHHHHHHHhcCCCee-EEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEE---EEEcCCcCHHHHHHH
Q 037851 149 GKGYEAFESRMSTLKSLQNALLDPDVT-ITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVF---AEVSDTPDIKKVQGE 224 (1053)
Q Consensus 149 ~~~~~~~~gR~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~w---v~~s~~~~~~~~~~~ 224 (1053)
+.....++|.++..+.+.+.+..+++. .+.++|+.|+||+|+|..+++..--+........ ...-.....-...+.
T Consensus 15 P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~ 94 (365)
T PRK07471 15 PRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARR 94 (365)
T ss_pred CCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHH
Confidence 445567899999999999998876654 5889999999999999999988642111100000 000000000011112
Q ss_pred HHHHhCCC-------CCCC------CChhHHHHHHHHHHh----cCCcEEEEEcCCCCc--cchhhhcCCCCCCCCCcEE
Q 037851 225 LADQLGMQ-------FDEE------SDVPGRARKLYARLQ----KENKILIILDNIWED--LDLEKVGVPSGNDCRGCKV 285 (1053)
Q Consensus 225 i~~~l~~~-------~~~~------~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~i 285 (1053)
|...-..+ .++. .-..+.+..+.+.+. .+++-++|+||++.. .....+...+.....++.+
T Consensus 95 i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~ 174 (365)
T PRK07471 95 IAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSLF 174 (365)
T ss_pred HHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEE
Confidence 21110000 0000 001123444444442 356779999999755 3334443333332345667
Q ss_pred EEEecChH-HHHhhC--CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCchHHHHH
Q 037851 286 LLTARDRH-VLESIG--SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPIAIVTL 351 (1053)
Q Consensus 286 ivTtR~~~-v~~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~ 351 (1053)
|++|.+.+ +..... ...+.+.+++.++..+++.+...... .+....+++.++|.|..+..+
T Consensus 175 IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~~-----~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 175 LLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDLP-----DDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred EEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccCC-----HHHHHHHHHHcCCCHHHHHHH
Confidence 77776653 332222 56889999999999999987653211 122367899999999866554
No 88
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.16 E-value=2.3e-06 Score=67.91 Aligned_cols=56 Identities=29% Similarity=0.440 Sum_probs=33.5
Q ss_pred ceeEEeecCccccCCCc-ccccCccCcEEEcCCcccCC--ccccCCCCCCcEEEccCCC
Q 037851 529 KLKVLDFTRMRLLSLPS-SIHLLTDLRTLCLDGCELED--IRVIGELKDLEILSLQGSK 584 (1053)
Q Consensus 529 ~Lr~L~l~~~~~~~lp~-~i~~l~~Lr~L~L~~~~~~~--~~~i~~l~~L~~L~l~~~~ 584 (1053)
+|++|++++|.+..+|+ .+..+++|++|++++|.+.. +..+..+++|++|++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 56666666666666653 45566666666666666555 2455566666666666554
No 89
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.16 E-value=3.2e-05 Score=89.99 Aligned_cols=177 Identities=13% Similarity=0.173 Sum_probs=107.2
Q ss_pred CcccccchHHHHHHHHHHhcCCCe-eEEEEEcCCCCcHHHHHHHHHHHhhhcCC-------------------CCeEEEE
Q 037851 151 GYEAFESRMSTLKSLQNALLDPDV-TITGVYGMGGLGKTTLVKEVARQVKKDKH-------------------FDEVVFA 210 (1053)
Q Consensus 151 ~~~~~~gR~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-------------------f~~~~wv 210 (1053)
...+++|.+..++.|..++..+++ ..+.++|+.|+||||+|+.+++...-... |.-++.+
T Consensus 14 tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEi 93 (709)
T PRK08691 14 TFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEI 93 (709)
T ss_pred CHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEE
Confidence 356789999999999999886664 46799999999999999999887531111 1111222
Q ss_pred EEcCCcCHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHH----hcCCcEEEEEcCCCCccc--hhhhcCCCCCCCCCcE
Q 037851 211 EVSDTPDIKKVQGELADQLGMQFDEESDVPGRARKLYARL----QKENKILIILDNIWEDLD--LEKVGVPSGNDCRGCK 284 (1053)
Q Consensus 211 ~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l----~~~~~~LlvlDdv~~~~~--~~~l~~~~~~~~~gs~ 284 (1053)
+.+....+. .++.+.+.. ..+++-++|+|+++.... ...+...+-.....++
T Consensus 94 daAs~~gVd----------------------~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~ 151 (709)
T PRK08691 94 DAASNTGID----------------------NIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVK 151 (709)
T ss_pred eccccCCHH----------------------HHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcE
Confidence 222222221 112222211 125667899999976532 3333333322223556
Q ss_pred EEEEecChH-HHHhh-C-CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCchHHHH
Q 037851 285 VLLTARDRH-VLESI-G-SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPIAIVT 350 (1053)
Q Consensus 285 iivTtR~~~-v~~~~-~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~ 350 (1053)
+|++|.+.. +.... + ...+++.+++.++....+.+.+..... .--.+....|++.++|.+.-+..
T Consensus 152 fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi-~id~eAL~~Ia~~A~GslRdAln 219 (709)
T PRK08691 152 FILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKI-AYEPPALQLLGRAAAGSMRDALS 219 (709)
T ss_pred EEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCC-CcCHHHHHHHHHHhCCCHHHHHH
Confidence 776665442 22221 2 457788899999999999887753221 11245678999999998854433
No 90
>PLN03150 hypothetical protein; Provisional
Probab=98.16 E-value=3.7e-06 Score=100.76 Aligned_cols=103 Identities=25% Similarity=0.431 Sum_probs=75.5
Q ss_pred ceeEEeecCcccc-CCCcccccCccCcEEEcCCcccCC--ccccCCCCCCcEEEccCCCCc-ccchhhhccCCCCeeecc
Q 037851 529 KLKVLDFTRMRLL-SLPSSIHLLTDLRTLCLDGCELED--IRVIGELKDLEILSLQGSKIE-QLPREIGQLTQLKLLDLS 604 (1053)
Q Consensus 529 ~Lr~L~l~~~~~~-~lp~~i~~l~~Lr~L~L~~~~~~~--~~~i~~l~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~l~ 604 (1053)
.++.|+|+++.+. .+|..++.+.+|++|+|++|.+.. |..++.+++|++|+|++|.+. .+|..+++|++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4777888888876 577788888888888888888765 567888888888888888877 678888888888888888
Q ss_pred CcccccccCcchhcC-CccCceeeccccc
Q 037851 605 NCSKLKVIAPNVLSN-LSQLEELYMANCS 632 (1053)
Q Consensus 605 ~~~~l~~~~~~~l~~-l~~L~~L~l~~~~ 632 (1053)
+|. +....|..++. +.++..+++.+|.
T Consensus 499 ~N~-l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 499 GNS-LSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCc-ccccCChHHhhccccCceEEecCCc
Confidence 853 44333344554 3456677766654
No 91
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.15 E-value=1.4e-05 Score=82.78 Aligned_cols=158 Identities=19% Similarity=0.207 Sum_probs=99.9
Q ss_pred HHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhCCCCCCCCChhHHHHH
Q 037851 166 QNALLDPDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLGMQFDEESDVPGRARK 245 (1053)
Q Consensus 166 ~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 245 (1053)
.+.+.+++++.+.+||++|+||||||+.+....+... ..||..|-...-..-.+.|.++-. .
T Consensus 154 rs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq--------------~ 215 (554)
T KOG2028|consen 154 RSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQ--------------N 215 (554)
T ss_pred HHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHH--------------H
Confidence 3455578899999999999999999999998866332 567887765543333444444321 1
Q ss_pred HHHHHhcCCcEEEEEcCCCCccch-hhhcCCCCCCCCCcEEE--EEecChHHHHh---hC-CCcccccCCCHHHHHHHHH
Q 037851 246 LYARLQKENKILIILDNIWEDLDL-EKVGVPSGNDCRGCKVL--LTARDRHVLES---IG-SKTLRIDVLNDEEAWTLFK 318 (1053)
Q Consensus 246 l~~~l~~~~~~LlvlDdv~~~~~~-~~l~~~~~~~~~gs~ii--vTtR~~~v~~~---~~-~~~~~l~~L~~~~~~~lf~ 318 (1053)
. ..+ .++|.+|++|.|..-..- .+...+ ...+|+-++ .||.++.+.-. .. ..++-+++|+.++...++.
T Consensus 216 ~-~~l-~krkTilFiDEiHRFNksQQD~fLP--~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~ 291 (554)
T KOG2028|consen 216 E-KSL-TKRKTILFIDEIHRFNKSQQDTFLP--HVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILM 291 (554)
T ss_pred H-Hhh-hcceeEEEeHHhhhhhhhhhhcccc--eeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHH
Confidence 1 112 478999999999755221 222233 334566544 48888765432 22 5788999999999999998
Q ss_pred HHhC---CC------CCCc---cchHHHHHHHHHhCCCc
Q 037851 319 KMTG---DC------AEKG---ELKSIATDVAKECGGLP 345 (1053)
Q Consensus 319 ~~~~---~~------~~~~---~~~~~~~~i~~~~~GlP 345 (1053)
+... +. .+.+ --..+.+-++..|+|-.
T Consensus 292 raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDa 330 (554)
T KOG2028|consen 292 RAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDA 330 (554)
T ss_pred HHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchH
Confidence 7432 11 1111 11245566677777765
No 92
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.15 E-value=4e-07 Score=91.30 Aligned_cols=124 Identities=27% Similarity=0.364 Sum_probs=98.4
Q ss_pred ceEEeeccCCCCCCCCCcccccCCCceeEEeecCccccCCCcccccCccCcEEEcCCcccCCcccc-CCCCCCcEEEccC
Q 037851 504 SRISLYDNNINSPLKIPDNIFIGTPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDGCELEDIRVI-GELKDLEILSLQG 582 (1053)
Q Consensus 504 ~~l~l~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~~~~i-~~l~~L~~L~l~~ 582 (1053)
..+.+++|.+.. +.++ ..-.+.+|+|++|+|++..+-+ +..|.+|..|||++|.+.....+ .+|-|.++|.|++
T Consensus 287 telDLS~N~I~~---iDES-vKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 287 TELDLSGNLITQ---IDES-VKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ 361 (490)
T ss_pred hhccccccchhh---hhhh-hhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh
Confidence 445555555443 3333 2457889999999999988765 88999999999999998875443 5788999999999
Q ss_pred CCCcccchhhhccCCCCeeeccCcccccccC-cchhcCCccCceeeccccccc
Q 037851 583 SKIEQLPREIGQLTQLKLLDLSNCSKLKVIA-PNVLSNLSQLEELYMANCSIE 634 (1053)
Q Consensus 583 ~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~-~~~l~~l~~L~~L~l~~~~~~ 634 (1053)
|.|+.+. ++++|.+|.+||+++ +++..+. ...||+|+.|++|.+.+|.+.
T Consensus 362 N~iE~LS-GL~KLYSLvnLDl~~-N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 362 NKIETLS-GLRKLYSLVNLDLSS-NQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhHhhhh-hhHhhhhheeccccc-cchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 9999887 789999999999999 4555542 245899999999999999873
No 93
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.14 E-value=8.1e-05 Score=83.86 Aligned_cols=182 Identities=13% Similarity=0.151 Sum_probs=110.3
Q ss_pred CcccccchHHHHHHHHHHhcCCCe-eEEEEEcCCCCcHHHHHHHHHHHhhhcC--------------------CCCeEEE
Q 037851 151 GYEAFESRMSTLKSLQNALLDPDV-TITGVYGMGGLGKTTLVKEVARQVKKDK--------------------HFDEVVF 209 (1053)
Q Consensus 151 ~~~~~~gR~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~--------------------~f~~~~w 209 (1053)
....++|.+..++.+.+++..++. ..+.++|+.|+||||+|+.+++...-.. +++. ++
T Consensus 12 ~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~-~~ 90 (355)
T TIGR02397 12 TFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV-IE 90 (355)
T ss_pred cHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-EE
Confidence 345678999999999999876654 4678999999999999999998864211 2222 23
Q ss_pred EEEcCCcCHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCc--cchhhhcCCCCCCCCCcEEEE
Q 037851 210 AEVSDTPDIKKVQGELADQLGMQFDEESDVPGRARKLYARLQKENKILIILDNIWED--LDLEKVGVPSGNDCRGCKVLL 287 (1053)
Q Consensus 210 v~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iiv 287 (1053)
++.+......+ .+++...+... .. .+++-++|+|+++.. .....+...+......+.+|+
T Consensus 91 ~~~~~~~~~~~-~~~l~~~~~~~----------------p~-~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl 152 (355)
T TIGR02397 91 IDAASNNGVDD-IREILDNVKYA----------------PS-SGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFIL 152 (355)
T ss_pred eeccccCCHHH-HHHHHHHHhcC----------------cc-cCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEE
Confidence 32221112111 12222222110 00 245568899998654 334444443333334566677
Q ss_pred EecChH-HHHhhC--CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCchHHHHHH
Q 037851 288 TARDRH-VLESIG--SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPIAIVTLA 352 (1053)
Q Consensus 288 TtR~~~-v~~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~ 352 (1053)
+|.+.. +..... ...+++.+++.++....+...+..... .--++.+..|++.++|.|..+....
T Consensus 153 ~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~-~i~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 153 ATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGI-KIEDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred EeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCChHHHHHHH
Confidence 775554 233222 467889999999999999887642211 1124668889999999986665443
No 94
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.14 E-value=3.3e-05 Score=90.44 Aligned_cols=192 Identities=15% Similarity=0.111 Sum_probs=108.9
Q ss_pred CcccccchHHHHHHHHHHhcCCCee-EEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHh
Q 037851 151 GYEAFESRMSTLKSLQNALLDPDVT-ITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQL 229 (1053)
Q Consensus 151 ~~~~~~gR~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 229 (1053)
...+++|.+..++.|...+..+++. .+.++|..|+||||+|+.+++..--...+.. ..+..-...+.|...-
T Consensus 14 ~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~-------~pCg~C~~C~~i~~g~ 86 (647)
T PRK07994 14 TFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITA-------TPCGECDNCREIEQGR 86 (647)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCC-------CCCCCCHHHHHHHcCC
Confidence 3567889999999999888866653 4679999999999999999987642111100 0111111111111100
Q ss_pred CC-----CCCCCCChhHHHHHHHHHHh----cCCcEEEEEcCCCCc--cchhhhcCCCCCCCCCcEEEE-EecChHHHHh
Q 037851 230 GM-----QFDEESDVPGRARKLYARLQ----KENKILIILDNIWED--LDLEKVGVPSGNDCRGCKVLL-TARDRHVLES 297 (1053)
Q Consensus 230 ~~-----~~~~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iiv-TtR~~~v~~~ 297 (1053)
.. +....... +....+.+.+. .+++-++|+|+++.. ...+.+...+-.-....++|+ ||....+...
T Consensus 87 ~~D~ieidaas~~~V-ddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~T 165 (647)
T PRK07994 87 FVDLIEIDAASRTKV-EDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVT 165 (647)
T ss_pred CCCceeecccccCCH-HHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchH
Confidence 00 00000011 12222322221 366779999999765 344444333322223445554 4444444332
Q ss_pred hC--CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCchHHHHH
Q 037851 298 IG--SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPIAIVTL 351 (1053)
Q Consensus 298 ~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~ 351 (1053)
+. ...|++.+++.++....+.+.+..... ..-++....|++.++|.+-.+..+
T Consensus 166 I~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i-~~e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 166 ILSRCLQFHLKALDVEQIRQQLEHILQAEQI-PFEPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred HHhhheEeeCCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 22 578999999999999999887632111 112455778999999988644443
No 95
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.13 E-value=6.4e-05 Score=83.74 Aligned_cols=170 Identities=13% Similarity=0.082 Sum_probs=103.5
Q ss_pred ccccchHHHHHHHHHHhcCCC----------eeEEEEEcCCCCcHHHHHHHHHHHhhhcC-------------------C
Q 037851 153 EAFESRMSTLKSLQNALLDPD----------VTITGVYGMGGLGKTTLVKEVARQVKKDK-------------------H 203 (1053)
Q Consensus 153 ~~~~gR~~~~~~l~~~l~~~~----------~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~ 203 (1053)
..++|.+..++.+..++..+. ..-+.++|+.|+||||+|+.+++..--.. |
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 457898888999988887543 45688999999999999999988653111 1
Q ss_pred CCeEEEEEEc-CCcCHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHh----cCCcEEEEEcCCCCcc--chhhhcCCC
Q 037851 204 FDEVVFAEVS-DTPDIKKVQGELADQLGMQFDEESDVPGRARKLYARLQ----KENKILIILDNIWEDL--DLEKVGVPS 276 (1053)
Q Consensus 204 f~~~~wv~~s-~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~~ 276 (1053)
.|. .++... ....+ +.+..+.+... .+++-++|+|+++... ....+...+
T Consensus 85 pD~-~~i~~~~~~i~i----------------------~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~L 141 (394)
T PRK07940 85 PDV-RVVAPEGLSIGV----------------------DEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAV 141 (394)
T ss_pred CCE-EEeccccccCCH----------------------HHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHh
Confidence 111 112111 11111 11222333221 2455688889997652 333343333
Q ss_pred CCCCCCcEEEEEecCh-HHHHhhC--CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCchHHHHH
Q 037851 277 GNDCRGCKVLLTARDR-HVLESIG--SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPIAIVTL 351 (1053)
Q Consensus 277 ~~~~~gs~iivTtR~~-~v~~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~ 351 (1053)
-....+..+|++|.+. .+...+. ...+.+.+++.++..+.+.+..+ . .++.+..+++.++|.|.....+
T Consensus 142 Eep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~--~----~~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 142 EEPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG--V----DPETARRAARASQGHIGRARRL 213 (394)
T ss_pred hcCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC--C----CHHHHHHHHHHcCCCHHHHHHH
Confidence 2223456566665554 4443322 57889999999999988875432 1 1345788999999999765444
No 96
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.12 E-value=5.2e-05 Score=87.39 Aligned_cols=194 Identities=14% Similarity=0.123 Sum_probs=107.5
Q ss_pred CcccccchHHHHHHHHHHhcCCCe-eEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHh
Q 037851 151 GYEAFESRMSTLKSLQNALLDPDV-TITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQL 229 (1053)
Q Consensus 151 ~~~~~~gR~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 229 (1053)
...+++|++..++.+.+++..+++ ..+.++|+.|+||||+|+.+++...-.. |.... .++.-...+.+....
T Consensus 14 ~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~------~~~~~-~Cg~C~sCr~i~~~~ 86 (605)
T PRK05896 14 NFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLN------PKDGD-CCNSCSVCESINTNQ 86 (605)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCC------CCCCC-CCcccHHHHHHHcCC
Confidence 345788999999999999876554 4688999999999999999998864211 11100 111111111111110
Q ss_pred CCCC---CC--CCChhHHHHHHHHHHh----cCCcEEEEEcCCCCc--cchhhhcCCCCCCCCCcEEEEEe-cChHHHHh
Q 037851 230 GMQF---DE--ESDVPGRARKLYARLQ----KENKILIILDNIWED--LDLEKVGVPSGNDCRGCKVLLTA-RDRHVLES 297 (1053)
Q Consensus 230 ~~~~---~~--~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTt-R~~~v~~~ 297 (1053)
..+. +. .... +.++.+.+... .+++-++|+|+++.. ..+..+...+-.....+.+|++| ....+...
T Consensus 87 h~DiieIdaas~igV-d~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~T 165 (605)
T PRK05896 87 SVDIVELDAASNNGV-DEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLT 165 (605)
T ss_pred CCceEEeccccccCH-HHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHH
Confidence 0000 00 0001 11222222211 134446999999764 34444443332222345555444 43344332
Q ss_pred hC--CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCch-HHHHHHH
Q 037851 298 IG--SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPI-AIVTLAK 353 (1053)
Q Consensus 298 ~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPl-ai~~~~~ 353 (1053)
.. ...+++.+++.++....+.+.+..... .--.+.+..+++.++|.+. |+..+-.
T Consensus 166 I~SRcq~ieF~~Ls~~eL~~~L~~il~kegi-~Is~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 166 IISRCQRYNFKKLNNSELQELLKSIAKKEKI-KIEDNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred HHhhhhhcccCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 22 568899999999999998887642211 1114557889999999664 4444444
No 97
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.12 E-value=4.7e-05 Score=87.99 Aligned_cols=180 Identities=13% Similarity=0.156 Sum_probs=108.7
Q ss_pred CcccccchHHHHHHHHHHhcCCCee-EEEEEcCCCCcHHHHHHHHHHHhhhcC-------------------CCCeEEEE
Q 037851 151 GYEAFESRMSTLKSLQNALLDPDVT-ITGVYGMGGLGKTTLVKEVARQVKKDK-------------------HFDEVVFA 210 (1053)
Q Consensus 151 ~~~~~~gR~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~f~~~~wv 210 (1053)
...+++|-+..++.|.+++..+++. .+.++|+.|+||||+|+.+++..--.. .|.-++.+
T Consensus 14 ~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~ei 93 (509)
T PRK14958 14 CFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEV 93 (509)
T ss_pred CHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEE
Confidence 3457889999999999999866654 568999999999999999998764211 12223334
Q ss_pred EEcCCcCHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCc--cchhhhcCCCCCCCCCcEEEEE
Q 037851 211 EVSDTPDIKKVQGELADQLGMQFDEESDVPGRARKLYARLQKENKILIILDNIWED--LDLEKVGVPSGNDCRGCKVLLT 288 (1053)
Q Consensus 211 ~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivT 288 (1053)
+.+....+.++ +++++.+... -..++.-++|+|+++.. .....+...+-.....+++|++
T Consensus 94 daas~~~v~~i-R~l~~~~~~~-----------------p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIla 155 (509)
T PRK14958 94 DAASRTKVEDT-RELLDNIPYA-----------------PTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILA 155 (509)
T ss_pred cccccCCHHHH-HHHHHHHhhc-----------------cccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEE
Confidence 43333333332 2233222110 01356678899999865 3344443333332345666665
Q ss_pred ecCh-HHHHhhC--CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCchHHH
Q 037851 289 ARDR-HVLESIG--SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPIAIV 349 (1053)
Q Consensus 289 tR~~-~v~~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~ 349 (1053)
|.+. .+..... ...+++++++.++....+.+.+...... --.+....|++.++|.+.-+.
T Consensus 156 ttd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~-~~~~al~~ia~~s~GslR~al 218 (509)
T PRK14958 156 TTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVE-FENAALDLLARAANGSVRDAL 218 (509)
T ss_pred ECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCcHHHHH
Confidence 5443 3332222 5678999999999888777666422211 123456788999999875443
No 98
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.11 E-value=5.6e-05 Score=85.52 Aligned_cols=197 Identities=12% Similarity=0.121 Sum_probs=110.1
Q ss_pred cccccchHHHHHHHHHHhcCCCee-EEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEE-EcCCcCHHHHHHHHHHHh
Q 037851 152 YEAFESRMSTLKSLQNALLDPDVT-ITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAE-VSDTPDIKKVQGELADQL 229 (1053)
Q Consensus 152 ~~~~~gR~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~-~s~~~~~~~~~~~i~~~l 229 (1053)
...++|.+..++.|..++..++++ .+.++|+.|+||||+|+.+++...-...++...|.. +......-...+.+...-
T Consensus 15 ~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~ 94 (397)
T PRK14955 15 FADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAGT 94 (397)
T ss_pred HhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcCC
Confidence 457889998899998888876654 488999999999999999998864211111100110 000111111111111100
Q ss_pred CCCC---CC-CCChhHHHHHHHHHHh----cCCcEEEEEcCCCCc--cchhhhcCCCCCCCCCcEEEEEe-cChHHHHhh
Q 037851 230 GMQF---DE-ESDVPGRARKLYARLQ----KENKILIILDNIWED--LDLEKVGVPSGNDCRGCKVLLTA-RDRHVLESI 298 (1053)
Q Consensus 230 ~~~~---~~-~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTt-R~~~v~~~~ 298 (1053)
..+. +. .....+.+..+.+.+. .+++-++|+|+++.. ..++.+...+....+.+.+|++| +...+....
T Consensus 95 ~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~tl 174 (397)
T PRK14955 95 SLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATI 174 (397)
T ss_pred CCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHHH
Confidence 0000 00 0000122223333331 245668899999765 34555544444333456666555 444444332
Q ss_pred C--CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCchHHH
Q 037851 299 G--SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPIAIV 349 (1053)
Q Consensus 299 ~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~ 349 (1053)
. ...+++.+++.++..+.+.+.+.... ..--.+.+..|++.++|.+--+.
T Consensus 175 ~sR~~~v~f~~l~~~ei~~~l~~~~~~~g-~~i~~~al~~l~~~s~g~lr~a~ 226 (397)
T PRK14955 175 ASRCQRFNFKRIPLEEIQQQLQGICEAEG-ISVDADALQLIGRKAQGSMRDAQ 226 (397)
T ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHH
Confidence 2 45789999999999988887764211 11224668899999999875433
No 99
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=6e-08 Score=97.23 Aligned_cols=64 Identities=31% Similarity=0.457 Sum_probs=36.7
Q ss_pred CCCCCCcEEEccCCCCc-ccchhhhccCCCCeeeccCcccccccCc-chhcCCccCceeecccccc
Q 037851 570 GELKDLEILSLQGSKIE-QLPREIGQLTQLKLLDLSNCSKLKVIAP-NVLSNLSQLEELYMANCSI 633 (1053)
Q Consensus 570 ~~l~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~l~~~~~l~~~~~-~~l~~l~~L~~L~l~~~~~ 633 (1053)
..+.+|+.|.|.++.+. .+-..|.+-.+|+.|+++.|+.++.... -.+.+++.|+.|++++|..
T Consensus 207 s~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l 272 (419)
T KOG2120|consen 207 SQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFL 272 (419)
T ss_pred HHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhc
Confidence 33444444445444443 3334555666677777777665554322 1245777788888877765
No 100
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.09 E-value=8.7e-06 Score=88.80 Aligned_cols=35 Identities=23% Similarity=0.457 Sum_probs=15.9
Q ss_pred CccEEeEccCCCccccCCchhhhccCCccEEEecccchh
Q 037851 802 NLKTIKVGSCHKLKNLFSFSIAKFLPQLKTIEVTECKIV 840 (1053)
Q Consensus 802 ~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l 840 (1053)
+|+.|.+.+|.+++.+|.. ..++|+.|.+++|..+
T Consensus 73 sLtsL~Lsnc~nLtsLP~~----LP~nLe~L~Ls~Cs~L 107 (426)
T PRK15386 73 ELTEITIENCNNLTTLPGS----IPEGLEKLTVCHCPEI 107 (426)
T ss_pred CCcEEEccCCCCcccCCch----hhhhhhheEccCcccc
Confidence 3555555555555444320 1234555555555433
No 101
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.06 E-value=0.00014 Score=83.08 Aligned_cols=182 Identities=14% Similarity=0.145 Sum_probs=110.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhcCC
Q 037851 175 TITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLGMQFDEESDVPGRARKLYARLQKEN 254 (1053)
Q Consensus 175 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 254 (1053)
..+.|+|..|+|||.|++++++.......-..++|++. .++...+...++... .....+.+.+. +
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~------~~f~~~~~~~l~~~~-------~~~~~~~~~~~--~ 206 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSG------DEFARKAVDILQKTH-------KEIEQFKNEIC--Q 206 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHHHhh-------hHHHHHHHHhc--c
Confidence 46889999999999999999997654322234555543 356666666554210 12334444442 4
Q ss_pred cEEEEEcCCCCcc---ch-hhhcCCCCC-CCCCcEEEEEecChH---------HHHhhC-CCcccccCCCHHHHHHHHHH
Q 037851 255 KILIILDNIWEDL---DL-EKVGVPSGN-DCRGCKVLLTARDRH---------VLESIG-SKTLRIDVLNDEEAWTLFKK 319 (1053)
Q Consensus 255 ~~LlvlDdv~~~~---~~-~~l~~~~~~-~~~gs~iivTtR~~~---------v~~~~~-~~~~~l~~L~~~~~~~lf~~ 319 (1053)
.-+||+||+.... .+ +.+...+.. ...|..||+|+.... +...+. .-.+.+++++.++-..++++
T Consensus 207 ~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~ 286 (450)
T PRK14087 207 NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKK 286 (450)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHH
Confidence 5588999996432 22 222111111 123446888865331 222233 56778999999999999998
Q ss_pred HhCCCCC-CccchHHHHHHHHHhCCCchHHHHHHHHH-----hc---C-CCHHHHHHHHHHh
Q 037851 320 MTGDCAE-KGELKSIATDVAKECGGLPIAIVTLAKAL-----RN---K-TSVSTWKDALRQL 371 (1053)
Q Consensus 320 ~~~~~~~-~~~~~~~~~~i~~~~~GlPlai~~~~~~L-----~~---~-~~~~~w~~~l~~l 371 (1053)
++..... ..--+++..-|++.++|.|-.+.-+...+ .. + -+.+.-+.+++.+
T Consensus 287 ~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l~~~a~~~~~~~~it~~~v~~~l~~~ 348 (450)
T PRK14087 287 EIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSRLNFWSQQNPEEKIITIEIVSDLFRDI 348 (450)
T ss_pred HHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHhhc
Confidence 8853211 12336788999999999997776555333 11 1 2455556666654
No 102
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.06 E-value=0.00023 Score=77.04 Aligned_cols=205 Identities=10% Similarity=0.079 Sum_probs=125.2
Q ss_pred CCcccccchHHHHHHHHHHhc----CCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHH
Q 037851 150 KGYEAFESRMSTLKSLQNALL----DPDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGEL 225 (1053)
Q Consensus 150 ~~~~~~~gR~~~~~~l~~~l~----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 225 (1053)
.....+.||+.+++.+.+|+. ....+-+.|.|-+|.|||.+...++.+......=..++++++..-.....++..|
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI 226 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKI 226 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHH
Confidence 345578899999999998886 3466889999999999999999999987643322356778777666777777777
Q ss_pred HHHhCCCCCCCCChhHHHHHHHHHHhcCC-cEEEEEcCCCCccc--hhhhcCCCCC-CCCCcEEEEEecCh--HHHH---
Q 037851 226 ADQLGMQFDEESDVPGRARKLYARLQKEN-KILIILDNIWEDLD--LEKVGVPSGN-DCRGCKVLLTARDR--HVLE--- 296 (1053)
Q Consensus 226 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~~-~~LlvlDdv~~~~~--~~~l~~~~~~-~~~gs~iivTtR~~--~v~~--- 296 (1053)
...+-..........+....+.++..+.+ .+++|+|.++.... -..+...|.+ .-+++|+|+.---. +..+
T Consensus 227 ~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~L 306 (529)
T KOG2227|consen 227 FSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFL 306 (529)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHh
Confidence 77662211111111244556666665444 68999999875411 1111111111 12456655432211 1111
Q ss_pred ----h-hC--CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCchHHHHHHHH
Q 037851 297 ----S-IG--SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPIAIVTLAKA 354 (1053)
Q Consensus 297 ----~-~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~ 354 (1053)
. .+ ...+...|.+.++..+++..+.......+......+-+++++.|.---+..+-..
T Consensus 307 prL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv 371 (529)
T KOG2227|consen 307 PRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDV 371 (529)
T ss_pred hhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHH
Confidence 1 12 4577889999999999999988644444444444555566665544333333333
No 103
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.06 E-value=7.9e-05 Score=87.17 Aligned_cols=194 Identities=10% Similarity=0.092 Sum_probs=109.1
Q ss_pred CcccccchHHHHHHHHHHhcCCCe-eEEEEEcCCCCcHHHHHHHHHHHhhhcCCC--CeEEEEEEcCCcCHHHHHHHHHH
Q 037851 151 GYEAFESRMSTLKSLQNALLDPDV-TITGVYGMGGLGKTTLVKEVARQVKKDKHF--DEVVFAEVSDTPDIKKVQGELAD 227 (1053)
Q Consensus 151 ~~~~~~gR~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f--~~~~wv~~s~~~~~~~~~~~i~~ 227 (1053)
...+++|.+..++.|.+++..+++ ..+.++|..|+||||+|+.+++..--.+.. .+... ..++.-.....|..
T Consensus 14 ~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~i~~ 89 (618)
T PRK14951 14 SFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRDIDS 89 (618)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHHHHc
Confidence 345788988889999999886665 566899999999999999998875311100 00000 01111111222211
Q ss_pred HhCC-----CCCCCCChhHHHHHHHHHHh----cCCcEEEEEcCCCCc--cchhhhcCCCCCCCCCcEEEEEe-cChHHH
Q 037851 228 QLGM-----QFDEESDVPGRARKLYARLQ----KENKILIILDNIWED--LDLEKVGVPSGNDCRGCKVLLTA-RDRHVL 295 (1053)
Q Consensus 228 ~l~~-----~~~~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTt-R~~~v~ 295 (1053)
.-.. +....... +.+..+.+... .++.-++|+|+|+.. ..++.+...+-......++|++| ....+.
T Consensus 90 g~h~D~~eldaas~~~V-d~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil 168 (618)
T PRK14951 90 GRFVDYTELDAASNRGV-DEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVP 168 (618)
T ss_pred CCCCceeecCcccccCH-HHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhh
Confidence 0000 00000011 12223333221 245568899999865 34555544443333455666555 433433
Q ss_pred HhhC--CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCchHHHH
Q 037851 296 ESIG--SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPIAIVT 350 (1053)
Q Consensus 296 ~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~ 350 (1053)
.... ...+++++++.++..+.+.+.+...... --.+....|++.++|.+.-+..
T Consensus 169 ~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~-ie~~AL~~La~~s~GslR~al~ 224 (618)
T PRK14951 169 VTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVP-AEPQALRLLARAARGSMRDALS 224 (618)
T ss_pred HHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHH
Confidence 3222 5789999999999999998876432211 1245678899999997754443
No 104
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.04 E-value=0.00014 Score=74.40 Aligned_cols=184 Identities=18% Similarity=0.182 Sum_probs=115.9
Q ss_pred CCCcccccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeE-EEEEEcCCcCHHHHHHHH--
Q 037851 149 GKGYEAFESRMSTLKSLQNALLDPDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEV-VFAEVSDTPDIKKVQGEL-- 225 (1053)
Q Consensus 149 ~~~~~~~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~-~wv~~s~~~~~~~~~~~i-- 225 (1053)
+....++.|.+..+..+.+.+.....+....+|++|.|||+-|+.+++..--.+-|.+. .-.++|......-+-..+
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Kik~ 111 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKIKN 111 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhhcC
Confidence 44566788999999999988887778899999999999999999999887655566543 334555544332111111
Q ss_pred HHHhCCCCC-CCCChhHHHHHHHHHHhcCCc-EEEEEcCCCCc--cchhhhcCCCCCCCCCcEEEEEecChHHH-HhhC-
Q 037851 226 ADQLGMQFD-EESDVPGRARKLYARLQKENK-ILIILDNIWED--LDLEKVGVPSGNDCRGCKVLLTARDRHVL-ESIG- 299 (1053)
Q Consensus 226 ~~~l~~~~~-~~~~~~~~~~~l~~~l~~~~~-~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtR~~~v~-~~~~- 299 (1053)
..++..... .... ..++ -.+|||+++.. +.|.++..........+|.|+.+-.-... ....
T Consensus 112 fakl~~~~~~~~~~-------------~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~S 178 (346)
T KOG0989|consen 112 FAKLTVLLKRSDGY-------------PCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVS 178 (346)
T ss_pred HHHHhhccccccCC-------------CCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHh
Confidence 001110000 0000 1233 47789999865 67887766655555566765555433221 1111
Q ss_pred -CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCch
Q 037851 300 -SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPI 346 (1053)
Q Consensus 300 -~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPl 346 (1053)
-.-+..++|.+++...-++..+..+.-.-+ .+..+.|++.++|---
T Consensus 179 RC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d-~~al~~I~~~S~GdLR 225 (346)
T KOG0989|consen 179 RCQKFRFKKLKDEDIVDRLEKIASKEGVDID-DDALKLIAKISDGDLR 225 (346)
T ss_pred hHHHhcCCCcchHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHcCCcHH
Confidence 356889999999999999888853332222 3567889999988643
No 105
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.02 E-value=1.3e-05 Score=87.02 Aligned_cols=93 Identities=15% Similarity=0.195 Sum_probs=65.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCC--cCHHHHHHHHHHHhCCCCCCCCChh--HH----HH
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDT--PDIKKVQGELADQLGMQFDEESDVP--GR----AR 244 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~~~~~~~~--~~----~~ 244 (1053)
....++|+|++|+|||||++.+++....+ +|+..+|+.+.+. .++.++++.+...+-...-+.+... .. ..
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITRN-HPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhccc-CCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 44689999999999999999999998754 8999999999866 6899999988543322222211110 11 11
Q ss_pred HHHHHHhcCCcEEEEEcCCCCc
Q 037851 245 KLYARLQKENKILIILDNIWED 266 (1053)
Q Consensus 245 ~l~~~l~~~~~~LlvlDdv~~~ 266 (1053)
........+++++|++|++...
T Consensus 246 ~Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHHcCCCeEEEEEChhHH
Confidence 2222223689999999999654
No 106
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.02 E-value=9.6e-08 Score=106.81 Aligned_cols=126 Identities=25% Similarity=0.337 Sum_probs=85.5
Q ss_pred ceeEEeecCccccCCCcccccCccCcEEEcCCcccCCccccCCCCCCcEEEccCCCCcccch-hhhccCCCCeeeccCcc
Q 037851 529 KLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDGCELEDIRVIGELKDLEILSLQGSKIEQLPR-EIGQLTQLKLLDLSNCS 607 (1053)
Q Consensus 529 ~Lr~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~ 607 (1053)
.|.+.++++|.+..+-.++.-+.+|+.|+|++|++.+...+..|++|++|||++|.+..+|. +...+. |+.|++++ +
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrn-N 242 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRN-N 242 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhh-heeeeecc-c
Confidence 45556667777776667777777788888888887777777777888888888877777763 233333 77777777 5
Q ss_pred cccccCcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCCeEEEEeccC
Q 037851 608 KLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLEINILDA 668 (1053)
Q Consensus 608 ~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~ 668 (1053)
.+..+. ++.+|.+|+.||+++|.+. ....+.-|..|..|+.|.+.++..
T Consensus 243 ~l~tL~--gie~LksL~~LDlsyNll~----------~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 243 ALTTLR--GIENLKSLYGLDLSYNLLS----------EHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred HHHhhh--hHHhhhhhhccchhHhhhh----------cchhhhHHHHHHHHHHHhhcCCcc
Confidence 566652 3677788888887777652 233455556666667777766653
No 107
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.02 E-value=4.4e-05 Score=93.45 Aligned_cols=157 Identities=14% Similarity=0.226 Sum_probs=93.7
Q ss_pred CcccccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCC---C-CeEEEEEEcCCcCHHHHHHHHH
Q 037851 151 GYEAFESRMSTLKSLQNALLDPDVTITGVYGMGGLGKTTLVKEVARQVKKDKH---F-DEVVFAEVSDTPDIKKVQGELA 226 (1053)
Q Consensus 151 ~~~~~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~---f-~~~~wv~~s~~~~~~~~~~~i~ 226 (1053)
..++++||+++++++++.|......-+.++|++|+|||++|+.+++....... + +..+|. + +...+.
T Consensus 180 ~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~----~~~~l~---- 250 (731)
T TIGR02639 180 KIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-L----DMGSLL---- 250 (731)
T ss_pred CCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-e----cHHHHh----
Confidence 44578999999999999998666667789999999999999999998753221 1 223331 1 111111
Q ss_pred HHhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCcc----------chhhhcCCCCCCCCCcEEEEEecChHHHH
Q 037851 227 DQLGMQFDEESDVPGRARKLYARLQKENKILIILDNIWEDL----------DLEKVGVPSGNDCRGCKVLLTARDRHVLE 296 (1053)
Q Consensus 227 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~----------~~~~l~~~~~~~~~gs~iivTtR~~~v~~ 296 (1053)
.. .....+.+.....+.+.+...++.+|++|+++... +...+..+....+ .-++|-+|...+...
T Consensus 251 a~----~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g-~i~~IgaTt~~e~~~ 325 (731)
T TIGR02639 251 AG----TKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSG-KLRCIGSTTYEEYKN 325 (731)
T ss_pred hh----ccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCC-CeEEEEecCHHHHHH
Confidence 00 00011222445555555544568999999987331 1122222222211 235555554332211
Q ss_pred ------hh--CCCcccccCCCHHHHHHHHHHHh
Q 037851 297 ------SI--GSKTLRIDVLNDEEAWTLFKKMT 321 (1053)
Q Consensus 297 ------~~--~~~~~~l~~L~~~~~~~lf~~~~ 321 (1053)
.. ....+++++++.++..++++...
T Consensus 326 ~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 326 HFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 11 14578999999999999998665
No 108
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.02 E-value=0.00022 Score=82.88 Aligned_cols=195 Identities=12% Similarity=0.128 Sum_probs=110.5
Q ss_pred cccccchHHHHHHHHHHhcCCC-eeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhC
Q 037851 152 YEAFESRMSTLKSLQNALLDPD-VTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLG 230 (1053)
Q Consensus 152 ~~~~~gR~~~~~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 230 (1053)
..+++|.+..++.|.+++..++ ...+.++|+.|+||||+|+.+++..--....+. ..++.-...+.|...-.
T Consensus 15 f~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~-------~pCg~C~sC~~i~~g~h 87 (624)
T PRK14959 15 FAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTG-------EPCNTCEQCRKVTQGMH 87 (624)
T ss_pred HHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCC-------CCCcccHHHHHHhcCCC
Confidence 4567898888888888887655 467788999999999999999988642111000 00111111111111100
Q ss_pred CCC---C--CCCChhHHHHHHHHHHh----cCCcEEEEEcCCCCc--cchhhhcCCCCCCCCCcEEEEEecC-hHHHHhh
Q 037851 231 MQF---D--EESDVPGRARKLYARLQ----KENKILIILDNIWED--LDLEKVGVPSGNDCRGCKVLLTARD-RHVLESI 298 (1053)
Q Consensus 231 ~~~---~--~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtR~-~~v~~~~ 298 (1053)
.+. + ..... +.++.+.+.+. .+++-+||+|+++.. .....+...+........+|++|.+ ..+...+
T Consensus 88 pDv~eId~a~~~~I-d~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI 166 (624)
T PRK14959 88 VDVVEIDGASNRGI-DDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTI 166 (624)
T ss_pred CceEEEecccccCH-HHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHH
Confidence 000 0 00000 11122222221 356679999999765 3344444433222234556555544 4444332
Q ss_pred C--CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCc-hHHHHHHHHH
Q 037851 299 G--SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLP-IAIVTLAKAL 355 (1053)
Q Consensus 299 ~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlP-lai~~~~~~L 355 (1053)
. ...+++.+++.++....+.+.+..... .--++....|++.++|.+ .|+..+..++
T Consensus 167 ~SRcq~i~F~pLs~~eL~~~L~~il~~egi-~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 167 VSRCQHFTFTRLSEAGLEAHLTKVLGREGV-DYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HhhhhccccCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 2 467899999999999999886642211 112456888999999965 6777776555
No 109
>PF14516 AAA_35: AAA-like domain
Probab=98.01 E-value=0.00034 Score=76.94 Aligned_cols=201 Identities=11% Similarity=0.153 Sum_probs=119.9
Q ss_pred CCcccccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCC-----cCHHHHHHH
Q 037851 150 KGYEAFESRMSTLKSLQNALLDPDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDT-----PDIKKVQGE 224 (1053)
Q Consensus 150 ~~~~~~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-----~~~~~~~~~ 224 (1053)
.+.+-++.|...-+++.+.+.++ ...+.|.|+-.+|||+|...+.+..+.. .+ .++++++... .+...+++.
T Consensus 8 ~~~~~Yi~R~~~e~~~~~~i~~~-G~~~~I~apRq~GKTSll~~l~~~l~~~-~~-~~v~id~~~~~~~~~~~~~~f~~~ 84 (331)
T PF14516_consen 8 LDSPFYIERPPAEQECYQEIVQP-GSYIRIKAPRQMGKTSLLLRLLERLQQQ-GY-RCVYIDLQQLGSAIFSDLEQFLRW 84 (331)
T ss_pred CCCCcccCchHHHHHHHHHHhcC-CCEEEEECcccCCHHHHHHHHHHHHHHC-CC-EEEEEEeecCCCcccCCHHHHHHH
Confidence 34455678886677777777653 3689999999999999999999888753 34 4557777642 245555554
Q ss_pred H----HHHhCCCCCC-------CCChhHHHHHHHHHHh--cCCcEEEEEcCCCCccc---h-hhhcCCCC--------CC
Q 037851 225 L----ADQLGMQFDE-------ESDVPGRARKLYARLQ--KENKILIILDNIWEDLD---L-EKVGVPSG--------ND 279 (1053)
Q Consensus 225 i----~~~l~~~~~~-------~~~~~~~~~~l~~~l~--~~~~~LlvlDdv~~~~~---~-~~l~~~~~--------~~ 279 (1053)
+ .++++....- ..........+.+.+. .+++.+|++|+++..-. + .++...+. ..
T Consensus 85 ~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~ 164 (331)
T PF14516_consen 85 FCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNP 164 (331)
T ss_pred HHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCc
Confidence 4 4445433210 0111111222333332 26899999999975421 1 11111100 00
Q ss_pred CCCcEEEEEecChH--HHHh-----hC-CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCchHHHHH
Q 037851 280 CRGCKVLLTARDRH--VLES-----IG-SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPIAIVTL 351 (1053)
Q Consensus 280 ~~gs~iivTtR~~~--v~~~-----~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~ 351 (1053)
.-..-.++...+.+ .... .. ...++|.+++.+|...|..++-.... ....++|...+||+|.-+..+
T Consensus 165 ~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~~-----~~~~~~l~~~tgGhP~Lv~~~ 239 (331)
T PF14516_consen 165 IWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEFS-----QEQLEQLMDWTGGHPYLVQKA 239 (331)
T ss_pred ccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccCC-----HHHHHHHHHHHCCCHHHHHHH
Confidence 01111222222111 1111 11 45789999999999999988753211 223889999999999999999
Q ss_pred HHHHhcC
Q 037851 352 AKALRNK 358 (1053)
Q Consensus 352 ~~~L~~~ 358 (1053)
+..+...
T Consensus 240 ~~~l~~~ 246 (331)
T PF14516_consen 240 CYLLVEE 246 (331)
T ss_pred HHHHHHc
Confidence 9999664
No 110
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.00 E-value=0.00011 Score=85.57 Aligned_cols=177 Identities=14% Similarity=0.174 Sum_probs=106.9
Q ss_pred cccccchHHHHHHHHHHhcCCCee-EEEEEcCCCCcHHHHHHHHHHHhhhcC-------------------CCCeEEEEE
Q 037851 152 YEAFESRMSTLKSLQNALLDPDVT-ITGVYGMGGLGKTTLVKEVARQVKKDK-------------------HFDEVVFAE 211 (1053)
Q Consensus 152 ~~~~~gR~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~f~~~~wv~ 211 (1053)
..+++|.+..++.+..++..++.. .+.++|+.|+||||+|+.+++..--.. .|.-.++++
T Consensus 15 f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~ 94 (527)
T PRK14969 15 FSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVD 94 (527)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEee
Confidence 456889999999999988866654 568999999999999999998763111 111122232
Q ss_pred EcCCcCHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHh----cCCcEEEEEcCCCCcc--chhhhcCCCCCCCCCcEE
Q 037851 212 VSDTPDIKKVQGELADQLGMQFDEESDVPGRARKLYARLQ----KENKILIILDNIWEDL--DLEKVGVPSGNDCRGCKV 285 (1053)
Q Consensus 212 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~i 285 (1053)
.+....+.+ +..+.+... .+++-++|+|+++... ..+.+...+-.....+.+
T Consensus 95 ~~~~~~vd~----------------------ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~f 152 (527)
T PRK14969 95 AASNTQVDA----------------------MRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKF 152 (527)
T ss_pred ccccCCHHH----------------------HHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEE
Confidence 222112111 222222221 2566789999998653 344444333332345566
Q ss_pred EEEecCh-HHHHhhC--CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCch-HHHHH
Q 037851 286 LLTARDR-HVLESIG--SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPI-AIVTL 351 (1053)
Q Consensus 286 ivTtR~~-~v~~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPl-ai~~~ 351 (1053)
|++|.+. .+...+. ...+++.+++.++..+.+.+.+..... ..-++....|++.++|.+- |+..+
T Consensus 153 IL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi-~~~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 153 ILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENI-PFDATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred EEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 6555443 3322211 467899999999999888877642211 1124556889999999775 44443
No 111
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.99 E-value=9.3e-06 Score=88.56 Aligned_cols=61 Identities=16% Similarity=0.310 Sum_probs=46.4
Q ss_pred ccccceEeecccccceeccCCccccccccCCcccEEEEecCccccccccchhHhhhccCcEEEEecccccceee
Q 037851 912 LPNLEVLEVRDLNVAKIWHNQFSAAMSCNVQNLTRLVVLDCHKLRYVFSYSTAKRLGQLKHLVISRCPLLEEIV 985 (1053)
Q Consensus 912 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~l~~l~sL~~L~i~~c~~l~~i~ 985 (1053)
++.++.|++++|+++.++. ...+|++|.+.+|.+++.+ |. .+ .++|+.|+|++|..+..++
T Consensus 51 ~~~l~~L~Is~c~L~sLP~---------LP~sLtsL~Lsnc~nLtsL-P~-~L--P~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPV---------LPNELTEITIENCNNLTTL-PG-SI--PEGLEKLTVCHCPEISGLP 111 (426)
T ss_pred hcCCCEEEeCCCCCcccCC---------CCCCCcEEEccCCCCcccC-Cc-hh--hhhhhheEccCcccccccc
Confidence 6889999999998877651 2357999999999999876 32 22 4689999999997776553
No 112
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.99 E-value=6.1e-05 Score=92.71 Aligned_cols=180 Identities=10% Similarity=0.123 Sum_probs=103.7
Q ss_pred CCcccccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCC----CCeEE-EEEEcCCcCHHHHHHH
Q 037851 150 KGYEAFESRMSTLKSLQNALLDPDVTITGVYGMGGLGKTTLVKEVARQVKKDKH----FDEVV-FAEVSDTPDIKKVQGE 224 (1053)
Q Consensus 150 ~~~~~~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----f~~~~-wv~~s~~~~~~~~~~~ 224 (1053)
.....++||+.++.++++.|......-+.++|.+|+||||+|+.+++....... .+..+ .++.+.-..
T Consensus 184 ~~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~a------- 256 (852)
T TIGR03345 184 GKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQA------- 256 (852)
T ss_pred CCCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhc-------
Confidence 345678999999999999998766667789999999999999999998753221 12222 233321100
Q ss_pred HHHHhCCCCCCCCChhHHHHHHHHHHh-cCCcEEEEEcCCCCcc---------chhhhcCCCCCCCCCcEEEEEecChHH
Q 037851 225 LADQLGMQFDEESDVPGRARKLYARLQ-KENKILIILDNIWEDL---------DLEKVGVPSGNDCRGCKVLLTARDRHV 294 (1053)
Q Consensus 225 i~~~l~~~~~~~~~~~~~~~~l~~~l~-~~~~~LlvlDdv~~~~---------~~~~l~~~~~~~~~gs~iivTtR~~~v 294 (1053)
......+.+.....+.+.+. .+++.+|++|++.... +...+..+....+ .-++|-||...+.
T Consensus 257 -------g~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G-~l~~IgaTT~~e~ 328 (852)
T TIGR03345 257 -------GASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARG-ELRTIAATTWAEY 328 (852)
T ss_pred -------ccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCC-CeEEEEecCHHHH
Confidence 00001111123333444332 2578999999986542 1111233322221 3466666665332
Q ss_pred HHh------h--CCCcccccCCCHHHHHHHHHHHhCC---CCCCccchHHHHHHHHHhCCC
Q 037851 295 LES------I--GSKTLRIDVLNDEEAWTLFKKMTGD---CAEKGELKSIATDVAKECGGL 344 (1053)
Q Consensus 295 ~~~------~--~~~~~~l~~L~~~~~~~lf~~~~~~---~~~~~~~~~~~~~i~~~~~Gl 344 (1053)
... . ....+.+++++.++..++++..... ...-.-..+....+++.+++.
T Consensus 329 ~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 329 KKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRY 389 (852)
T ss_pred hhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccc
Confidence 111 1 1568999999999999998655421 111112245566666666554
No 113
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.97 E-value=6.9e-05 Score=84.32 Aligned_cols=174 Identities=17% Similarity=0.236 Sum_probs=102.1
Q ss_pred CCCcccccchHHHHHHHHHHhc----C---------CCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCC
Q 037851 149 GKGYEAFESRMSTLKSLQNALL----D---------PDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDT 215 (1053)
Q Consensus 149 ~~~~~~~~gR~~~~~~l~~~l~----~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~ 215 (1053)
......+.|+++.++++.+.+. . ...+-|.++|++|+|||++|+.+++... .. |+.++.
T Consensus 127 ~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~--~~-----~i~v~~- 198 (389)
T PRK03992 127 NVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN--AT-----FIRVVG- 198 (389)
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhC--CC-----EEEeeh-
Confidence 3345578899999998887653 1 2346789999999999999999998765 22 233321
Q ss_pred cCHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCcc------------c----hhhhcCCCC--
Q 037851 216 PDIKKVQGELADQLGMQFDEESDVPGRARKLYARLQKENKILIILDNIWEDL------------D----LEKVGVPSG-- 277 (1053)
Q Consensus 216 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~------------~----~~~l~~~~~-- 277 (1053)
.++ .....+ ........+.+......+.+|++||++... . +..+...+.
T Consensus 199 ---~~l----~~~~~g------~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~ 265 (389)
T PRK03992 199 ---SEL----VQKFIG------EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGF 265 (389)
T ss_pred ---HHH----hHhhcc------chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhcccc
Confidence 111 111100 111233344444434567899999997531 0 111111111
Q ss_pred CCCCCcEEEEEecChHHHHh----hC--CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCc
Q 037851 278 NDCRGCKVLLTARDRHVLES----IG--SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLP 345 (1053)
Q Consensus 278 ~~~~gs~iivTtR~~~v~~~----~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlP 345 (1053)
....+.+||.||...+.... .+ ...+++.+.+.++-.++|+.++.......+ .....+++.+.|.-
T Consensus 266 ~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~--~~~~~la~~t~g~s 337 (389)
T PRK03992 266 DPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADD--VDLEELAELTEGAS 337 (389)
T ss_pred CCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCc--CCHHHHHHHcCCCC
Confidence 11235678888876543321 12 457899999999999999988753322211 11456777777654
No 114
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.95 E-value=0.00018 Score=84.43 Aligned_cols=196 Identities=11% Similarity=0.136 Sum_probs=110.9
Q ss_pred CCcccccchHHHHHHHHHHhcCCCee-EEEEEcCCCCcHHHHHHHHHHHhhhcCCCC--eEEEEEEcCCcCHHHHHHHHH
Q 037851 150 KGYEAFESRMSTLKSLQNALLDPDVT-ITGVYGMGGLGKTTLVKEVARQVKKDKHFD--EVVFAEVSDTPDIKKVQGELA 226 (1053)
Q Consensus 150 ~~~~~~~gR~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~--~~~wv~~s~~~~~~~~~~~i~ 226 (1053)
....+++|.+..++.|.+++..++.. -+.++|+.|+||||+|+.+++...-..... ...+ ..+..-.-.+.|.
T Consensus 21 ~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~----~~cg~c~~C~~i~ 96 (598)
T PRK09111 21 QTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTI----DLCGVGEHCQAIM 96 (598)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcc----ccCcccHHHHHHh
Confidence 34567899999999999998866644 688999999999999999998764211110 0000 0001111111222
Q ss_pred HHhCCCC-----CCCCChhHHHHHHHHHHh----cCCcEEEEEcCCCCcc--chhhhcCCCCCCCCCcEEEEEe-cChHH
Q 037851 227 DQLGMQF-----DEESDVPGRARKLYARLQ----KENKILIILDNIWEDL--DLEKVGVPSGNDCRGCKVLLTA-RDRHV 294 (1053)
Q Consensus 227 ~~l~~~~-----~~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~iivTt-R~~~v 294 (1053)
..-..+. ...... +.+..+.+.+. .+++-++|+|+++... ..+.+...+-.-...+.+|++| ....+
T Consensus 97 ~g~h~Dv~e~~a~s~~gv-d~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kl 175 (598)
T PRK09111 97 EGRHVDVLEMDAASHTGV-DDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKV 175 (598)
T ss_pred cCCCCceEEecccccCCH-HHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhh
Confidence 1111000 000111 12222332221 2455679999997553 3444443333323456665544 44444
Q ss_pred HHhhC--CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCchHHHHH
Q 037851 295 LESIG--SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPIAIVTL 351 (1053)
Q Consensus 295 ~~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~ 351 (1053)
...+. ...+++.+++.++....+.+.+..... .--.+....|++.++|.+.-+...
T Consensus 176 l~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi-~i~~eAl~lIa~~a~Gdlr~al~~ 233 (598)
T PRK09111 176 PVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGV-EVEDEALALIARAAEGSVRDGLSL 233 (598)
T ss_pred hHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 33322 567899999999999999887642211 112356788999999988655443
No 115
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.94 E-value=5.1e-05 Score=77.91 Aligned_cols=155 Identities=19% Similarity=0.234 Sum_probs=91.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhcC
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLGMQFDEESDVPGRARKLYARLQKE 253 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 253 (1053)
...+.|+|..|+|||.|.+++++.......-..++|++. .++...+...+.. .....+++.+.
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~------~~f~~~~~~~~~~---------~~~~~~~~~~~-- 96 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSA------EEFIREFADALRD---------GEIEEFKDRLR-- 96 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEH------HHHHHHHHHHHHT---------TSHHHHHHHHC--
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecH------HHHHHHHHHHHHc---------ccchhhhhhhh--
Confidence 356899999999999999999998764333234666643 4455555555432 11244556663
Q ss_pred CcEEEEEcCCCCcc---chhh----hcCCCCCCCCCcEEEEEecCh---------HHHHhhC-CCcccccCCCHHHHHHH
Q 037851 254 NKILIILDNIWEDL---DLEK----VGVPSGNDCRGCKVLLTARDR---------HVLESIG-SKTLRIDVLNDEEAWTL 316 (1053)
Q Consensus 254 ~~~LlvlDdv~~~~---~~~~----l~~~~~~~~~gs~iivTtR~~---------~v~~~~~-~~~~~l~~L~~~~~~~l 316 (1053)
.-=+|++||++... .|.. +...+. ..|-+||+|++.. ++...+. ..++++++.+.++-..+
T Consensus 97 ~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~--~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~i 174 (219)
T PF00308_consen 97 SADLLIIDDIQFLAGKQRTQEELFHLFNRLI--ESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRI 174 (219)
T ss_dssp TSSEEEEETGGGGTTHHHHHHHHHHHHHHHH--HTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHH
T ss_pred cCCEEEEecchhhcCchHHHHHHHHHHHHHH--hhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHH
Confidence 45688999997542 2222 111111 2466899999644 2223333 66899999999999999
Q ss_pred HHHHhCCCCCCccchHHHHHHHHHhCCCchHH
Q 037851 317 FKKMTGDCAEKGELKSIATDVAKECGGLPIAI 348 (1053)
Q Consensus 317 f~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai 348 (1053)
+++.+....- .--+++.+-|++.+.+..-.+
T Consensus 175 l~~~a~~~~~-~l~~~v~~~l~~~~~~~~r~L 205 (219)
T PF00308_consen 175 LQKKAKERGI-ELPEEVIEYLARRFRRDVREL 205 (219)
T ss_dssp HHHHHHHTT---S-HHHHHHHHHHTTSSHHHH
T ss_pred HHHHHHHhCC-CCcHHHHHHHHHhhcCCHHHH
Confidence 9988852111 122456667777766544433
No 116
>PRK05642 DNA replication initiation factor; Validated
Probab=97.93 E-value=0.00016 Score=75.36 Aligned_cols=150 Identities=14% Similarity=0.188 Sum_probs=90.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhcCC
Q 037851 175 TITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLGMQFDEESDVPGRARKLYARLQKEN 254 (1053)
Q Consensus 175 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 254 (1053)
..+.|+|..|+|||.||+.+++....+ -..++|++..+ +... ...+.+.+. +-
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~--~~~v~y~~~~~------~~~~------------------~~~~~~~~~-~~ 98 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQR--GEPAVYLPLAE------LLDR------------------GPELLDNLE-QY 98 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEeeHHH------HHhh------------------hHHHHHhhh-hC
Confidence 578999999999999999999876533 23567776542 2111 012333342 22
Q ss_pred cEEEEEcCCCCc---cchhh-hcCCCCC-CCCCcEEEEEecChHH---------HHhhC-CCcccccCCCHHHHHHHHHH
Q 037851 255 KILIILDNIWED---LDLEK-VGVPSGN-DCRGCKVLLTARDRHV---------LESIG-SKTLRIDVLNDEEAWTLFKK 319 (1053)
Q Consensus 255 ~~LlvlDdv~~~---~~~~~-l~~~~~~-~~~gs~iivTtR~~~v---------~~~~~-~~~~~l~~L~~~~~~~lf~~ 319 (1053)
=+||+||+... ..|+. +...+.. ...|.++|+|++...- ...+. ..++++++++.++-..++++
T Consensus 99 -d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ 177 (234)
T PRK05642 99 -ELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQL 177 (234)
T ss_pred -CEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHH
Confidence 26789999633 34432 2222211 1235678888875321 11222 46789999999999999986
Q ss_pred HhCCCCCCccchHHHHHHHHHhCCCchHHHHHHH
Q 037851 320 MTGDCAEKGELKSIATDVAKECGGLPIAIVTLAK 353 (1053)
Q Consensus 320 ~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~ 353 (1053)
++.... -.--+++..-|++++.|..-++..+-.
T Consensus 178 ka~~~~-~~l~~ev~~~L~~~~~~d~r~l~~~l~ 210 (234)
T PRK05642 178 RASRRG-LHLTDEVGHFILTRGTRSMSALFDLLE 210 (234)
T ss_pred HHHHcC-CCCCHHHHHHHHHhcCCCHHHHHHHHH
Confidence 664221 112257778888888876555444333
No 117
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.93 E-value=7.5e-06 Score=93.75 Aligned_cols=165 Identities=33% Similarity=0.444 Sum_probs=122.1
Q ss_pred cceEEeeccCCCCCCCCCcccccCC-CceeEEeecCccccCCCcccccCccCcEEEcCCcccCCc-cccCCCCCCcEEEc
Q 037851 503 CSRISLYDNNINSPLKIPDNIFIGT-PKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDGCELEDI-RVIGELKDLEILSL 580 (1053)
Q Consensus 503 ~~~l~l~~~~~~~~~~~~~~~~~~~-~~Lr~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~~-~~i~~l~~L~~L~l 580 (1053)
...+.+..+.+.. +++.. ..+ ++|+.|++++|.+..+|..+..+++|+.|++++|.+... ...+.+.+|+.|++
T Consensus 118 l~~L~l~~n~i~~---i~~~~-~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 118 LTSLDLDNNNITD---IPPLI-GLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDL 193 (394)
T ss_pred eeEEecCCccccc---Ccccc-ccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheec
Confidence 3444554444443 55443 234 389999999999999988899999999999999999884 55559999999999
Q ss_pred cCCCCcccchhhhccCCCCeeeccCcccccccCcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCCe
Q 037851 581 QGSKIEQLPREIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTS 660 (1053)
Q Consensus 581 ~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~ 660 (1053)
++|.+..+|..+..+.+|++|.++++..+ ..+ ..+.++.++..|.+.++.+. ..+..++.+++++.
T Consensus 194 s~N~i~~l~~~~~~~~~L~~l~~~~N~~~-~~~-~~~~~~~~l~~l~l~~n~~~------------~~~~~~~~l~~l~~ 259 (394)
T COG4886 194 SGNKISDLPPEIELLSALEELDLSNNSII-ELL-SSLSNLKNLSGLELSNNKLE------------DLPESIGNLSNLET 259 (394)
T ss_pred cCCccccCchhhhhhhhhhhhhhcCCcce-ecc-hhhhhcccccccccCCceee------------eccchhccccccce
Confidence 99999999998888888999999984333 332 33788889988887776641 22566777888889
Q ss_pred EEEEeccCCCCCCccccccCceEEE
Q 037851 661 LEINILDAGILPSGFFSRKLKRYRI 685 (1053)
Q Consensus 661 L~i~~~~~~~~~~~~~~~~L~~l~l 685 (1053)
|+++.+....++......+++.+.+
T Consensus 260 L~~s~n~i~~i~~~~~~~~l~~L~~ 284 (394)
T COG4886 260 LDLSNNQISSISSLGSLTNLRELDL 284 (394)
T ss_pred eccccccccccccccccCccCEEec
Confidence 9988887776665222244444443
No 118
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.92 E-value=0.0001 Score=76.98 Aligned_cols=166 Identities=10% Similarity=0.094 Sum_probs=94.7
Q ss_pred chHHH-HHHHHHHhc-CCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhCCCCC
Q 037851 157 SRMST-LKSLQNALL-DPDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLGMQFD 234 (1053)
Q Consensus 157 gR~~~-~~~l~~~l~-~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~ 234 (1053)
|+... +..+.++.. ....+.+.|+|..|+|||+||+.+++.....+ ....+++...... . +
T Consensus 23 ~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~--~~~~~i~~~~~~~------~----~----- 85 (227)
T PRK08903 23 GENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYGG--RNARYLDAASPLL------A----F----- 85 (227)
T ss_pred CCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCC--CcEEEEehHHhHH------H----H-----
Confidence 44333 344444433 23446789999999999999999999864322 2345555443210 0 0
Q ss_pred CCCChhHHHHHHHHHHhcCCcEEEEEcCCCCccch--hhhcCCCCC-CCCCc-EEEEEecChHHH--------HhhC-CC
Q 037851 235 EESDVPGRARKLYARLQKENKILIILDNIWEDLDL--EKVGVPSGN-DCRGC-KVLLTARDRHVL--------ESIG-SK 301 (1053)
Q Consensus 235 ~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~~--~~l~~~~~~-~~~gs-~iivTtR~~~v~--------~~~~-~~ 301 (1053)
... .+.-+||+||+.....+ ..+...+.. ...|. .+|+|++..... ..+. ..
T Consensus 86 -------------~~~--~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~ 150 (227)
T PRK08903 86 -------------DFD--PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGL 150 (227)
T ss_pred -------------hhc--ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCe
Confidence 011 23347889999654221 122222211 11233 466766643211 1222 46
Q ss_pred cccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCchHHHHHHHHH
Q 037851 302 TLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPIAIVTLAKAL 355 (1053)
Q Consensus 302 ~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~L 355 (1053)
.+++.++++++-..++.+.+.... ..--+++...+++.+.|.+..+..+...+
T Consensus 151 ~i~l~pl~~~~~~~~l~~~~~~~~-v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 151 VYELKPLSDADKIAALKAAAAERG-LQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred EEEecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 889999999887777776543211 12224678888888999888877666655
No 119
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.92 E-value=0.00026 Score=79.83 Aligned_cols=183 Identities=12% Similarity=0.151 Sum_probs=105.6
Q ss_pred CcccccchHHHHHHHHHHhcCCCe-eEEEEEcCCCCcHHHHHHHHHHHhhhc------CCCCe-EEEEEEcCCcCHHHHH
Q 037851 151 GYEAFESRMSTLKSLQNALLDPDV-TITGVYGMGGLGKTTLVKEVARQVKKD------KHFDE-VVFAEVSDTPDIKKVQ 222 (1053)
Q Consensus 151 ~~~~~~gR~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~------~~f~~-~~wv~~s~~~~~~~~~ 222 (1053)
...+++|.+...+.+.+++..++. +.+.++|+.|+||||+|+.+++..... ..|.. ++.++.....+..++
T Consensus 15 ~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i- 93 (367)
T PRK14970 15 TFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDDI- 93 (367)
T ss_pred cHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHHH-
Confidence 345678999999999999976654 478899999999999999998876421 11211 111111111112221
Q ss_pred HHHHHHhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCcc--chhhhcCCCCCCCCCcEEEEEe-cChHHHHhhC
Q 037851 223 GELADQLGMQFDEESDVPGRARKLYARLQKENKILIILDNIWEDL--DLEKVGVPSGNDCRGCKVLLTA-RDRHVLESIG 299 (1053)
Q Consensus 223 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~iivTt-R~~~v~~~~~ 299 (1053)
.++.+++... .. .+++-++|+|++.... .+..+...+......+.+|++| +...+.....
T Consensus 94 ~~l~~~~~~~----------------p~-~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~ 156 (367)
T PRK14970 94 RNLIDQVRIP----------------PQ-TGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTIL 156 (367)
T ss_pred HHHHHHHhhc----------------cc-cCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHH
Confidence 2222221100 00 1455689999986542 3444433222222344555555 3333322222
Q ss_pred --CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCch-HHHHHH
Q 037851 300 --SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPI-AIVTLA 352 (1053)
Q Consensus 300 --~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPl-ai~~~~ 352 (1053)
...+++.++++++....+.+.+....- .--++....|++.++|.+- |+..+-
T Consensus 157 sr~~~v~~~~~~~~~l~~~l~~~~~~~g~-~i~~~al~~l~~~~~gdlr~~~~~le 211 (367)
T PRK14970 157 SRCQIFDFKRITIKDIKEHLAGIAVKEGI-KFEDDALHIIAQKADGALRDALSIFD 211 (367)
T ss_pred hcceeEecCCccHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 457899999999999988887642211 1124668889999998665 433333
No 120
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.91 E-value=0.00029 Score=83.43 Aligned_cols=178 Identities=12% Similarity=0.145 Sum_probs=108.7
Q ss_pred cccccchHHHHHHHHHHhcCCCee-EEEEEcCCCCcHHHHHHHHHHHhhh---------------------cCCCCeEEE
Q 037851 152 YEAFESRMSTLKSLQNALLDPDVT-ITGVYGMGGLGKTTLVKEVARQVKK---------------------DKHFDEVVF 209 (1053)
Q Consensus 152 ~~~~~gR~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~---------------------~~~f~~~~w 209 (1053)
...++|.+..++.+..++..++.. .+.++|+.|+||||+|+.+++...- ..+|+. ..
T Consensus 16 f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~-~~ 94 (614)
T PRK14971 16 FESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI-HE 94 (614)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce-EE
Confidence 457889999999999999876654 5789999999999999999887531 113332 22
Q ss_pred EEEcCCcCHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCc--cchhhhcCCCCCCCCCcEEEE
Q 037851 210 AEVSDTPDIKKVQGELADQLGMQFDEESDVPGRARKLYARLQKENKILIILDNIWED--LDLEKVGVPSGNDCRGCKVLL 287 (1053)
Q Consensus 210 v~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iiv 287 (1053)
++.+....+.++. ++++++.... . .+++-++|+|+++.. ..+..+...+..-..++.+|+
T Consensus 95 ld~~~~~~vd~Ir-~li~~~~~~P----------------~-~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL 156 (614)
T PRK14971 95 LDAASNNSVDDIR-NLIEQVRIPP----------------Q-IGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFIL 156 (614)
T ss_pred ecccccCCHHHHH-HHHHHHhhCc----------------c-cCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEE
Confidence 3332222222222 2222211100 0 245568899998765 334444443333234556555
Q ss_pred -EecChHHHHhhC--CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCchHHH
Q 037851 288 -TARDRHVLESIG--SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPIAIV 349 (1053)
Q Consensus 288 -TtR~~~v~~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~ 349 (1053)
||+...+..... ...+++.+++.++....+.+.+....- .--.+.+..|++.++|..--+.
T Consensus 157 ~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi-~i~~~al~~La~~s~gdlr~al 220 (614)
T PRK14971 157 ATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGI-TAEPEALNVIAQKADGGMRDAL 220 (614)
T ss_pred EeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHH
Confidence 445444444333 567999999999999999887643221 1123567889999999765443
No 121
>PLN03150 hypothetical protein; Provisional
Probab=97.91 E-value=2.1e-05 Score=94.26 Aligned_cols=103 Identities=26% Similarity=0.347 Sum_probs=78.5
Q ss_pred cCcEEEcCCcccCC--ccccCCCCCCcEEEccCCCCc-ccchhhhccCCCCeeeccCcccccccCcchhcCCccCceeec
Q 037851 552 DLRTLCLDGCELED--IRVIGELKDLEILSLQGSKIE-QLPREIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYM 628 (1053)
Q Consensus 552 ~Lr~L~L~~~~~~~--~~~i~~l~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l 628 (1053)
.++.|+|++|.+.. |..++.|++|++|+|++|.+. .+|..++.+++|++|++++| .+....|..+++|++|+.|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N-~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYN-SFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCC-CCCCCCchHHhcCCCCCEEEC
Confidence 47788999998876 678899999999999999887 88888999999999999984 566555666899999999999
Q ss_pred ccccccccccCCcccccCCChhhhcCC-CCCCeEEEEec
Q 037851 629 ANCSIEWEHLGPGIERSNASLDELKNL-SRLTSLEINIL 666 (1053)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~~~~~L~~l-~~L~~L~i~~~ 666 (1053)
++|.+ ....+..++.+ .++..+++.++
T Consensus 498 s~N~l-----------~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 498 NGNSL-----------SGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred cCCcc-----------cccCChHHhhccccCceEEecCC
Confidence 98876 23444445442 34455655544
No 122
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.89 E-value=0.00023 Score=86.45 Aligned_cols=173 Identities=14% Similarity=0.145 Sum_probs=106.1
Q ss_pred cccccchHHHHHHHHHHhcCCCee-EEEEEcCCCCcHHHHHHHHHHHhhhcCC----------------------CCeEE
Q 037851 152 YEAFESRMSTLKSLQNALLDPDVT-ITGVYGMGGLGKTTLVKEVARQVKKDKH----------------------FDEVV 208 (1053)
Q Consensus 152 ~~~~~gR~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~----------------------f~~~~ 208 (1053)
..+++|.+..++.|..++..+++. .+.++|+.|+||||+|+.+++.+.-... +| ++
T Consensus 14 f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~d-v~ 92 (824)
T PRK07764 14 FAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLD-VT 92 (824)
T ss_pred HHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCc-EE
Confidence 457889999999999998876654 5789999999999999999988641111 11 12
Q ss_pred EEEEcCCcCHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHH----hcCCcEEEEEcCCCCc--cchhhhcCCCCCCCCC
Q 037851 209 FAEVSDTPDIKKVQGELADQLGMQFDEESDVPGRARKLYARL----QKENKILIILDNIWED--LDLEKVGVPSGNDCRG 282 (1053)
Q Consensus 209 wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l----~~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~g 282 (1053)
+++......+.+ ++.+.+.+ ..+++-++|||+++.. ..++.|...+-.-...
T Consensus 93 eidaas~~~Vd~----------------------iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~ 150 (824)
T PRK07764 93 EIDAASHGGVDD----------------------ARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEH 150 (824)
T ss_pred EecccccCCHHH----------------------HHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCC
Confidence 222211111111 12222221 1355668889999765 3344444333333345
Q ss_pred cEEEEEe-cChHHHHhhC--CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCchHH
Q 037851 283 CKVLLTA-RDRHVLESIG--SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPIAI 348 (1053)
Q Consensus 283 s~iivTt-R~~~v~~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai 348 (1053)
+.+|++| ....+...+. ...|++..++.++..+.+.+.+..... ..-.+....|++.++|.+..+
T Consensus 151 ~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv-~id~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 151 LKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGV-PVEPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred eEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHH
Confidence 5555555 4444444333 678899999999999888877632211 112345678999999988433
No 123
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.88 E-value=9.7e-05 Score=78.65 Aligned_cols=133 Identities=14% Similarity=0.192 Sum_probs=70.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhc
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLGMQFDEESDVPGRARKLYARLQK 252 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 252 (1053)
...-+.++|++|+||||+|+.+++.....+......++.++.. ++.... .+ ........+.+..
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~----~l~~~~---~g-------~~~~~~~~~~~~a-- 104 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA----DLVGEY---IG-------HTAQKTREVIKKA-- 104 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH----Hhhhhh---cc-------chHHHHHHHHHhc--
Confidence 3456789999999999999999987643221122223333221 111110 00 0011122222222
Q ss_pred CCcEEEEEcCCCCc----------cchhhhcCCCCCCCCCcEEEEEecChHHHH------hh--C-CCcccccCCCHHHH
Q 037851 253 ENKILIILDNIWED----------LDLEKVGVPSGNDCRGCKVLLTARDRHVLE------SI--G-SKTLRIDVLNDEEA 313 (1053)
Q Consensus 253 ~~~~LlvlDdv~~~----------~~~~~l~~~~~~~~~gs~iivTtR~~~v~~------~~--~-~~~~~l~~L~~~~~ 313 (1053)
..-+|++|+++.. ...+.+...+........+|+++...+... .. . ...+++.+++.+|-
T Consensus 105 -~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el 183 (261)
T TIGR02881 105 -LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEEL 183 (261)
T ss_pred -cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHH
Confidence 2348899999752 122333333322223335556654432211 11 1 34678999999999
Q ss_pred HHHHHHHhC
Q 037851 314 WTLFKKMTG 322 (1053)
Q Consensus 314 ~~lf~~~~~ 322 (1053)
.+++++.+.
T Consensus 184 ~~Il~~~~~ 192 (261)
T TIGR02881 184 MEIAERMVK 192 (261)
T ss_pred HHHHHHHHH
Confidence 999987774
No 124
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.88 E-value=0.00038 Score=81.92 Aligned_cols=200 Identities=14% Similarity=0.136 Sum_probs=108.6
Q ss_pred cccccchHHHHHHHHHHhcCCCee-EEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEE-EcCCcCHHHHHHHHHHHh
Q 037851 152 YEAFESRMSTLKSLQNALLDPDVT-ITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAE-VSDTPDIKKVQGELADQL 229 (1053)
Q Consensus 152 ~~~~~gR~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~-~s~~~~~~~~~~~i~~~l 229 (1053)
..+++|.+..+..+.+++..+++. .+.++|+.|+||||+|+.+++..--...++.-.|.. +...+..-...+.+...-
T Consensus 15 f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~ 94 (620)
T PRK14954 15 FADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAGT 94 (620)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhccC
Confidence 457889999999998888766654 488999999999999999998864221111000110 001111111111111110
Q ss_pred CCCC---CC-CCChhHHHHHHHHHHh----cCCcEEEEEcCCCCcc--chhhhcCCCCCCCCCcEEEEEe-cChHHHHhh
Q 037851 230 GMQF---DE-ESDVPGRARKLYARLQ----KENKILIILDNIWEDL--DLEKVGVPSGNDCRGCKVLLTA-RDRHVLESI 298 (1053)
Q Consensus 230 ~~~~---~~-~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~iivTt-R~~~v~~~~ 298 (1053)
..+. +. .....+.+..+.+.+. .+++-++|+|+++... ..+.+...+-.-...+.+|++| +...+...+
T Consensus 95 ~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~TI 174 (620)
T PRK14954 95 SLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATI 174 (620)
T ss_pred CCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHH
Confidence 0000 00 0000122223333331 2456688999987653 3444443333322345555444 444444332
Q ss_pred C--CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCch-HHHHHH
Q 037851 299 G--SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPI-AIVTLA 352 (1053)
Q Consensus 299 ~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPl-ai~~~~ 352 (1053)
. ...+++.+++.++....+.+.+..... .--.+.+..|++.++|..- |+..+-
T Consensus 175 ~SRc~~vef~~l~~~ei~~~L~~i~~~egi-~I~~eal~~La~~s~Gdlr~al~eLe 230 (620)
T PRK14954 175 ASRCQRFNFKRIPLDEIQSQLQMICRAEGI-QIDADALQLIARKAQGSMRDAQSILD 230 (620)
T ss_pred HhhceEEecCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 2 678999999999998888876642111 1124568889999999654 444333
No 125
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.87 E-value=0.0004 Score=79.45 Aligned_cols=181 Identities=14% Similarity=0.147 Sum_probs=105.9
Q ss_pred cccccchHHHHHHHHHHhcCCCe-eEEEEEcCCCCcHHHHHHHHHHHhhhcC---------------------CCCeEEE
Q 037851 152 YEAFESRMSTLKSLQNALLDPDV-TITGVYGMGGLGKTTLVKEVARQVKKDK---------------------HFDEVVF 209 (1053)
Q Consensus 152 ~~~~~gR~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~---------------------~f~~~~w 209 (1053)
..+++|.+..++.+.+++..++. ..+.++|+.|+||||+|+.+++..--.. +++ .++
T Consensus 16 ~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d-~~~ 94 (451)
T PRK06305 16 FSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD-VLE 94 (451)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-eEE
Confidence 45788999999999999876665 5678999999999999999998764211 111 111
Q ss_pred EEEcCCcCHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCc--cchhhhcCCCCCCCCCcEEEE
Q 037851 210 AEVSDTPDIKKVQGELADQLGMQFDEESDVPGRARKLYARLQKENKILIILDNIWED--LDLEKVGVPSGNDCRGCKVLL 287 (1053)
Q Consensus 210 v~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iiv 287 (1053)
+.........++ +++.+.+. ..-..+++-++|+|+++.. ...+.+...+........+|+
T Consensus 95 i~g~~~~gid~i-r~i~~~l~-----------------~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il 156 (451)
T PRK06305 95 IDGASHRGIEDI-RQINETVL-----------------FTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFL 156 (451)
T ss_pred eeccccCCHHHH-HHHHHHHH-----------------hhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEE
Confidence 211111111111 11111110 0001256778899998654 233334333333233556666
Q ss_pred EecC-hHHHHhhC--CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCch-HHHHHH
Q 037851 288 TARD-RHVLESIG--SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPI-AIVTLA 352 (1053)
Q Consensus 288 TtR~-~~v~~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPl-ai~~~~ 352 (1053)
+|.. ..+...+. ...+++.++++++....+.+.+..... .--++.+..|++.++|.+- |+..+-
T Consensus 157 ~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~-~i~~~al~~L~~~s~gdlr~a~~~Le 224 (451)
T PRK06305 157 ATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGI-ETSREALLPIARAAQGSLRDAESLYD 224 (451)
T ss_pred EeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 6643 33332222 567899999999999888877642111 1124568889999999764 444443
No 126
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.87 E-value=0.00035 Score=81.54 Aligned_cols=181 Identities=16% Similarity=0.164 Sum_probs=109.4
Q ss_pred cccccchHHHHHHHHHHhcCCCee-EEEEEcCCCCcHHHHHHHHHHHhhhcCCCC---------------------eEEE
Q 037851 152 YEAFESRMSTLKSLQNALLDPDVT-ITGVYGMGGLGKTTLVKEVARQVKKDKHFD---------------------EVVF 209 (1053)
Q Consensus 152 ~~~~~gR~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~---------------------~~~w 209 (1053)
..+++|.+..++.|..++..+++. .+.++|+.|+||||+|+.+++...-....+ -++.
T Consensus 12 f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dvie 91 (584)
T PRK14952 12 FAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDVVE 91 (584)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceEEE
Confidence 457889999999999999876654 468999999999999999998754111100 0112
Q ss_pred EEEcCCcCHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHh----cCCcEEEEEcCCCCc--cchhhhcCCCCCCCCCc
Q 037851 210 AEVSDTPDIKKVQGELADQLGMQFDEESDVPGRARKLYARLQ----KENKILIILDNIWED--LDLEKVGVPSGNDCRGC 283 (1053)
Q Consensus 210 v~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs 283 (1053)
++.+....+ +....+.+... .+++-++|+|+++.. ...+.+...+-......
T Consensus 92 idaas~~gv----------------------d~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~ 149 (584)
T PRK14952 92 LDAASHGGV----------------------DDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHL 149 (584)
T ss_pred eccccccCH----------------------HHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCe
Confidence 222111111 11222222221 245668899999754 34444443333333355
Q ss_pred EEEE-EecChHHHHhhC--CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCch-HHHHHHHHH
Q 037851 284 KVLL-TARDRHVLESIG--SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPI-AIVTLAKAL 355 (1053)
Q Consensus 284 ~iiv-TtR~~~v~~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPl-ai~~~~~~L 355 (1053)
.+|+ ||....+...+. ...+++.+++.++..+.+.+.+..... .--.+....|++.++|.+- |+..+-.++
T Consensus 150 ~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi-~i~~~al~~Ia~~s~GdlR~aln~Ldql~ 224 (584)
T PRK14952 150 IFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGV-VVDDAVYPLVIRAGGGSPRDTLSVLDQLL 224 (584)
T ss_pred EEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 5554 544444444332 678999999999999888876642221 1123557788999999774 555554443
No 127
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.86 E-value=0.004 Score=63.37 Aligned_cols=176 Identities=17% Similarity=0.178 Sum_probs=101.9
Q ss_pred CCcccccchHHHHHHHHHHhc-----CCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHH
Q 037851 150 KGYEAFESRMSTLKSLQNALL-----DPDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGE 224 (1053)
Q Consensus 150 ~~~~~~~gR~~~~~~l~~~l~-----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 224 (1053)
....+|+|.++.++++.=.+. +..+--+.++|++|.||||||.-+++...++-+ ++......-.
T Consensus 23 ~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k------~tsGp~leK~----- 91 (332)
T COG2255 23 KTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLK------ITSGPALEKP----- 91 (332)
T ss_pred ccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeE------ecccccccCh-----
Confidence 445689999888887754443 345678899999999999999999999875311 1111110100
Q ss_pred HHHHhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCcc-ch--------hhhcCC-CCCCCCCc-----------
Q 037851 225 LADQLGMQFDEESDVPGRARKLYARLQKENKILIILDNIWEDL-DL--------EKVGVP-SGNDCRGC----------- 283 (1053)
Q Consensus 225 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~-~~--------~~l~~~-~~~~~~gs----------- 283 (1053)
.-...+...+ ...=++++|.+.... .. +++..- .-..++++
T Consensus 92 ----------------gDlaaiLt~L--e~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFT 153 (332)
T COG2255 92 ----------------GDLAAILTNL--EEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFT 153 (332)
T ss_pred ----------------hhHHHHHhcC--CcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCee
Confidence 1111222222 233455556654331 00 111000 00112222
Q ss_pred EEEEEecChHHHHhhC---CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCchHHHHHHHHH
Q 037851 284 KVLLTARDRHVLESIG---SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPIAIVTLAKAL 355 (1053)
Q Consensus 284 ~iivTtR~~~v~~~~~---~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~L 355 (1053)
-|=.|||...+..-.. ..+.+++..+.+|-.++..+.+..- .-.--++.+.+|+++..|-|--+.-+-+..
T Consensus 154 LIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l-~i~i~~~~a~eIA~rSRGTPRIAnRLLrRV 227 (332)
T COG2255 154 LIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKIL-GIEIDEEAALEIARRSRGTPRIANRLLRRV 227 (332)
T ss_pred EeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHh-CCCCChHHHHHHHHhccCCcHHHHHHHHHH
Confidence 3446899765554333 4567899999999999999888421 111224568999999999996554444433
No 128
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.86 E-value=0.00013 Score=90.39 Aligned_cols=156 Identities=13% Similarity=0.228 Sum_probs=94.2
Q ss_pred cccccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCC---C-CeEEEEEEcCCcCHHHHHHHHHH
Q 037851 152 YEAFESRMSTLKSLQNALLDPDVTITGVYGMGGLGKTTLVKEVARQVKKDKH---F-DEVVFAEVSDTPDIKKVQGELAD 227 (1053)
Q Consensus 152 ~~~~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~---f-~~~~wv~~s~~~~~~~~~~~i~~ 227 (1053)
..+++||+++++++++.|......-+.++|++|+|||++|+.++........ . +..+|. + +...++
T Consensus 178 ~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~----- 247 (821)
T CHL00095 178 LDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLL----- 247 (821)
T ss_pred CCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHh-----
Confidence 4568999999999999998655566789999999999999999998753211 1 233442 1 211111
Q ss_pred HhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCcc---------chhhhcCCCCCCCCCcEEEEEecChHHHHh-
Q 037851 228 QLGMQFDEESDVPGRARKLYARLQKENKILIILDNIWEDL---------DLEKVGVPSGNDCRGCKVLLTARDRHVLES- 297 (1053)
Q Consensus 228 ~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~---------~~~~l~~~~~~~~~gs~iivTtR~~~v~~~- 297 (1053)
. ......+.++....+.+.+.+.++.+|++|+++... +...+..+....+ .-++|.+|...+....
T Consensus 248 --a-g~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg-~l~~IgaTt~~ey~~~i 323 (821)
T CHL00095 248 --A-GTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARG-ELQCIGATTLDEYRKHI 323 (821)
T ss_pred --c-cCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCC-CcEEEEeCCHHHHHHHH
Confidence 0 111112223455556666555678999999996321 1122222222211 2456666665543221
Q ss_pred -----h-C-CCcccccCCCHHHHHHHHHHHh
Q 037851 298 -----I-G-SKTLRIDVLNDEEAWTLFKKMT 321 (1053)
Q Consensus 298 -----~-~-~~~~~l~~L~~~~~~~lf~~~~ 321 (1053)
+ . ...+.+...+.++...+++...
T Consensus 324 e~D~aL~rRf~~I~v~ep~~~e~~aILr~l~ 354 (821)
T CHL00095 324 EKDPALERRFQPVYVGEPSVEETIEILFGLR 354 (821)
T ss_pred hcCHHHHhcceEEecCCCCHHHHHHHHHHHH
Confidence 1 1 4567888899999888887543
No 129
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.86 E-value=0.00016 Score=82.61 Aligned_cols=161 Identities=17% Similarity=0.260 Sum_probs=93.3
Q ss_pred CCCcccccchHHHHHHHHHHhc----C---------CCeeEEEEEcCCCCcHHHHHHHHHHHhhhcC---CCCeEEEEEE
Q 037851 149 GKGYEAFESRMSTLKSLQNALL----D---------PDVTITGVYGMGGLGKTTLVKEVARQVKKDK---HFDEVVFAEV 212 (1053)
Q Consensus 149 ~~~~~~~~gR~~~~~~l~~~l~----~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---~f~~~~wv~~ 212 (1053)
......+.|.+..++++.+.+. . ...+-+.++|++|+|||++|+.+++...... ......|+++
T Consensus 178 ~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v 257 (512)
T TIGR03689 178 DVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNI 257 (512)
T ss_pred CCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEec
Confidence 3445667789988888877653 1 1345689999999999999999999875321 1223445554
Q ss_pred cCCcCHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHH----hcCCcEEEEEcCCCCcc---------c-----hhhhcC
Q 037851 213 SDTPDIKKVQGELADQLGMQFDEESDVPGRARKLYARL----QKENKILIILDNIWEDL---------D-----LEKVGV 274 (1053)
Q Consensus 213 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l----~~~~~~LlvlDdv~~~~---------~-----~~~l~~ 274 (1053)
.... + +.... ...+.....+.+.. ..+++.+|++|+++... + ...+..
T Consensus 258 ~~~e----L----l~kyv------Gete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~ 323 (512)
T TIGR03689 258 KGPE----L----LNKYV------GETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLS 323 (512)
T ss_pred cchh----h----ccccc------chHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHH
Confidence 4321 1 10000 00111222222222 23578999999997431 1 112222
Q ss_pred CCCC--CCCCcEEEEEecChHHHHh----hC--CCcccccCCCHHHHHHHHHHHhCC
Q 037851 275 PSGN--DCRGCKVLLTARDRHVLES----IG--SKTLRIDVLNDEEAWTLFKKMTGD 323 (1053)
Q Consensus 275 ~~~~--~~~gs~iivTtR~~~v~~~----~~--~~~~~l~~L~~~~~~~lf~~~~~~ 323 (1053)
.+.. ...+..||.||...+.... -+ ...|++...+.++..++|+.+...
T Consensus 324 ~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 324 ELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred HhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 2211 1234556667765543321 12 456899999999999999998753
No 130
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.84 E-value=8.2e-05 Score=82.33 Aligned_cols=108 Identities=17% Similarity=0.200 Sum_probs=73.3
Q ss_pred ccccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhCCC
Q 037851 153 EAFESRMSTLKSLQNALLDPDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLGMQ 232 (1053)
Q Consensus 153 ~~~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 232 (1053)
..+++.+..++.+...|... +.|.++|++|+|||++|+.+++.......|+.+.||.+++..+..+++..+.-. +..
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~-~vg 251 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPN-GVG 251 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCC-CCC
Confidence 34667788899999888743 578889999999999999999988766678889999999988877765432100 000
Q ss_pred CCCCCChhHHHHHHHHHHh--cCCcEEEEEcCCCCc
Q 037851 233 FDEESDVPGRARKLYARLQ--KENKILIILDNIWED 266 (1053)
Q Consensus 233 ~~~~~~~~~~~~~l~~~l~--~~~~~LlvlDdv~~~ 266 (1053)
. ....+...++.+... .++++++|+|++...
T Consensus 252 y---~~~~G~f~~~~~~A~~~p~~~~vliIDEINRa 284 (459)
T PRK11331 252 F---RRKDGIFYNFCQQAKEQPEKKYVFIIDEINRA 284 (459)
T ss_pred e---EecCchHHHHHHHHHhcccCCcEEEEehhhcc
Confidence 0 000111112222221 257899999999755
No 131
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.83 E-value=0.00041 Score=79.66 Aligned_cols=181 Identities=15% Similarity=0.156 Sum_probs=107.7
Q ss_pred cccccchHHHHHHHHHHhcCCCee-EEEEEcCCCCcHHHHHHHHHHHhhhcCC------------------C-CeEEEEE
Q 037851 152 YEAFESRMSTLKSLQNALLDPDVT-ITGVYGMGGLGKTTLVKEVARQVKKDKH------------------F-DEVVFAE 211 (1053)
Q Consensus 152 ~~~~~gR~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~------------------f-~~~~wv~ 211 (1053)
..+++|-+...+.+..++..++.. +..++|+.|+||||+|+.+++..--... + .-++.++
T Consensus 13 fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~eld 92 (535)
T PRK08451 13 FDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEMD 92 (535)
T ss_pred HHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEec
Confidence 457889888889998888766654 5689999999999999999987531110 1 0122222
Q ss_pred EcCCcCHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCc--cchhhhcCCCCCCCCCcEEEEEe
Q 037851 212 VSDTPDIKKVQGELADQLGMQFDEESDVPGRARKLYARLQKENKILIILDNIWED--LDLEKVGVPSGNDCRGCKVLLTA 289 (1053)
Q Consensus 212 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTt 289 (1053)
.+....+.++. ++++.... .-..+++-++|+|+++.. .....+...+-.....+++|++|
T Consensus 93 aas~~gId~IR-elie~~~~-----------------~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 93 AASNRGIDDIR-ELIEQTKY-----------------KPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred cccccCHHHHH-HHHHHHhh-----------------CcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEE
Confidence 22211222221 11111100 000145668899999765 23344433332223456777666
Q ss_pred cCh-HHHHhhC--CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCchHHHHH
Q 037851 290 RDR-HVLESIG--SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPIAIVTL 351 (1053)
Q Consensus 290 R~~-~v~~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~ 351 (1053)
.+. .+..... ...+++.+++.++....+.+.+..... .--++....|++.++|.+.-+..+
T Consensus 155 td~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi-~i~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 155 TDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGV-SYEPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred CChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCcHHHHHHH
Confidence 654 2222222 568899999999999988877642221 112466889999999988555444
No 132
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=8.5e-07 Score=89.18 Aligned_cols=86 Identities=24% Similarity=0.231 Sum_probs=42.1
Q ss_pred CcccEEEEecCc-cccccccchhHhhhccCcEEEEecccccceeecccCccccCCcccccccCccccccccccccccCCC
Q 037851 942 QNLTRLVVLDCH-KLRYVFSYSTAKRLGQLKHLVISRCPLLEEIVGKEGGVEADPSFVFPQLTILKLSSLPELRAFYPGI 1020 (1053)
Q Consensus 942 ~~L~~L~i~~c~-~l~~l~~~~~l~~l~sL~~L~i~~c~~l~~i~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~l~~~~ 1020 (1053)
++|+.|++++|. ++..--.......+|.|.+||+++|-.++.-+. .....|+.|++|.++.|-.+- |.-+
T Consensus 286 e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~-------~~~~kf~~L~~lSlsRCY~i~--p~~~ 356 (419)
T KOG2120|consen 286 ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCF-------QEFFKFNYLQHLSLSRCYDII--PETL 356 (419)
T ss_pred hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHH-------HHHHhcchheeeehhhhcCCC--hHHe
Confidence 446666666665 222111122334566666666666665543211 123346666666666665441 1100
Q ss_pred -CccCCCCcceEEEecC
Q 037851 1021 -HTLECPILTKLEVSFC 1036 (1053)
Q Consensus 1021 -~~~~~~sL~~L~I~~C 1036 (1053)
.....|+|.+|++.+|
T Consensus 357 ~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 357 LELNSKPSLVYLDVFGC 373 (419)
T ss_pred eeeccCcceEEEEeccc
Confidence 0112466777777665
No 133
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.80 E-value=0.00054 Score=81.45 Aligned_cols=194 Identities=14% Similarity=0.152 Sum_probs=111.1
Q ss_pred cccccchHHHHHHHHHHhcCCCe-eEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhC
Q 037851 152 YEAFESRMSTLKSLQNALLDPDV-TITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLG 230 (1053)
Q Consensus 152 ~~~~~gR~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 230 (1053)
...++|.+..++.|..++..+++ ..+.++|+.|+||||+|+.+++...-...... ...++.....+.|.....
T Consensus 15 ~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~------~~~c~~c~~c~~i~~~~~ 88 (585)
T PRK14950 15 FAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPK------GRPCGTCEMCRAIAEGSA 88 (585)
T ss_pred HHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC------CCCCccCHHHHHHhcCCC
Confidence 45788999999999888876554 45689999999999999999987642111000 001111222233322111
Q ss_pred CCC---C--CCCChhHHHHHHHHHHh----cCCcEEEEEcCCCCc--cchhhhcCCCCCCCCCcEEEEEecC-hHHHHhh
Q 037851 231 MQF---D--EESDVPGRARKLYARLQ----KENKILIILDNIWED--LDLEKVGVPSGNDCRGCKVLLTARD-RHVLESI 298 (1053)
Q Consensus 231 ~~~---~--~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtR~-~~v~~~~ 298 (1053)
.+. + ..... +.+..+.+.+. .+++-++|+|+++.. ...+.+...+......+.+|++|.+ ..+....
T Consensus 89 ~d~~~i~~~~~~~v-d~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI 167 (585)
T PRK14950 89 VDVIEMDAASHTSV-DDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATI 167 (585)
T ss_pred CeEEEEeccccCCH-HHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHH
Confidence 110 0 00111 12223333322 245678999999654 3344444333332345566665543 3333322
Q ss_pred C--CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCchHHHHHHH
Q 037851 299 G--SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPIAIVTLAK 353 (1053)
Q Consensus 299 ~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~ 353 (1053)
. ...+++.+++.++....+.+.+...... --.+....|++.++|.+..+...-.
T Consensus 168 ~SR~~~i~f~~l~~~el~~~L~~~a~~egl~-i~~eal~~La~~s~Gdlr~al~~Le 223 (585)
T PRK14950 168 LSRCQRFDFHRHSVADMAAHLRKIAAAEGIN-LEPGALEAIARAATGSMRDAENLLQ 223 (585)
T ss_pred HhccceeeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 2 4678899999999999888877532211 1245688999999998865544433
No 134
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.80 E-value=0.00044 Score=81.66 Aligned_cols=179 Identities=12% Similarity=0.134 Sum_probs=106.6
Q ss_pred CcccccchHHHHHHHHHHhcCCCe-eEEEEEcCCCCcHHHHHHHHHHHhhhcCCCC---e-------------EEEEEEc
Q 037851 151 GYEAFESRMSTLKSLQNALLDPDV-TITGVYGMGGLGKTTLVKEVARQVKKDKHFD---E-------------VVFAEVS 213 (1053)
Q Consensus 151 ~~~~~~gR~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~---~-------------~~wv~~s 213 (1053)
....++|.+..++.+..++..+++ ..+.++|+.|+||||+|+.+++..--....+ . ++++...
T Consensus 16 ~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvieidaa 95 (725)
T PRK07133 16 TFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEMDAA 95 (725)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEEecc
Confidence 345788999999999998876654 4567999999999999999998753111100 0 1111111
Q ss_pred CCcCHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHh----cCCcEEEEEcCCCCc--cchhhhcCCCCCCCCCcEEE-
Q 037851 214 DTPDIKKVQGELADQLGMQFDEESDVPGRARKLYARLQ----KENKILIILDNIWED--LDLEKVGVPSGNDCRGCKVL- 286 (1053)
Q Consensus 214 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~ii- 286 (1053)
....+ ..++.+.+.+. .+++-++|+|+++.. ..+..+...+-.......+|
T Consensus 96 sn~~v----------------------d~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifIL 153 (725)
T PRK07133 96 SNNGV----------------------DEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFIL 153 (725)
T ss_pred ccCCH----------------------HHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEE
Confidence 10111 22233333332 256668999999754 34555543332222344444
Q ss_pred EEecChHHHHhhC--CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCch-HHHHHH
Q 037851 287 LTARDRHVLESIG--SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPI-AIVTLA 352 (1053)
Q Consensus 287 vTtR~~~v~~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPl-ai~~~~ 352 (1053)
+||+...+..... ...+++.+++.++....+...+..... ..-.+.+..|++.++|.+. |+..+-
T Consensus 154 aTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI-~id~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 154 ATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENI-SYEKNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred EcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 5555444443322 568999999999999888876532111 1113557889999999775 444333
No 135
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.77 E-value=0.00077 Score=77.62 Aligned_cols=178 Identities=14% Similarity=0.106 Sum_probs=105.4
Q ss_pred cccccchHHHHHHHHHHhcCCCee-EEEEEcCCCCcHHHHHHHHHHHhhhc-------------------CCCCeEEEEE
Q 037851 152 YEAFESRMSTLKSLQNALLDPDVT-ITGVYGMGGLGKTTLVKEVARQVKKD-------------------KHFDEVVFAE 211 (1053)
Q Consensus 152 ~~~~~gR~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~-------------------~~f~~~~wv~ 211 (1053)
...++|.+.....+.+++..++.. .+.++|+.|+||||+|+.++....-. +.|...++++
T Consensus 15 f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eid 94 (486)
T PRK14953 15 FKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEID 94 (486)
T ss_pred HHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEe
Confidence 456789999999999999765544 56789999999999999999875310 0111122222
Q ss_pred EcCCcCHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHh----cCCcEEEEEcCCCCc--cchhhhcCCCCCCCCCcEE
Q 037851 212 VSDTPDIKKVQGELADQLGMQFDEESDVPGRARKLYARLQ----KENKILIILDNIWED--LDLEKVGVPSGNDCRGCKV 285 (1053)
Q Consensus 212 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~i 285 (1053)
.+...... ..+.+.+... .+++-++|+|+++.. ...+.+...+........+
T Consensus 95 aas~~gvd----------------------~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~ 152 (486)
T PRK14953 95 AASNRGID----------------------DIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIF 152 (486)
T ss_pred CccCCCHH----------------------HHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEE
Confidence 22111111 1122222221 256679999999754 2344443333332234455
Q ss_pred EEEe-cChHHHHhhC--CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCchHHHHHH
Q 037851 286 LLTA-RDRHVLESIG--SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPIAIVTLA 352 (1053)
Q Consensus 286 ivTt-R~~~v~~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~ 352 (1053)
|++| +...+..... ...+.+.+++.++....+.+.+..... .--.+....|++.++|.+..+....
T Consensus 153 Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi-~id~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 153 ILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKI-EYEEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred EEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 5544 4333333222 567899999999999888887642211 1123557788999999776554443
No 136
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.75 E-value=6.1e-06 Score=94.52 Aligned_cols=106 Identities=29% Similarity=0.380 Sum_probs=82.1
Q ss_pred cCCCceeEEeecCccccCCCcccccCccCcEEEcCCcccCCccccCCCCCCcEEEccCCCCcccchhhhccCCCCeeecc
Q 037851 525 IGTPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDGCELEDIRVIGELKDLEILSLQGSKIEQLPREIGQLTQLKLLDLS 604 (1053)
Q Consensus 525 ~~~~~Lr~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~ 604 (1053)
..+++|..|++.+|.+..+...+..+.+|++|++++|.|..+..+..+..|+.|++++|.|..++ .+..+++|+.++++
T Consensus 92 ~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l~l~ 170 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDIS-GLESLKSLKLLDLS 170 (414)
T ss_pred ccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhcc-CCccchhhhcccCC
Confidence 56778888888888888776667788888888888888888888888888888888888888776 45558888888888
Q ss_pred CcccccccCc-chhcCCccCceeecccccc
Q 037851 605 NCSKLKVIAP-NVLSNLSQLEELYMANCSI 633 (1053)
Q Consensus 605 ~~~~l~~~~~-~~l~~l~~L~~L~l~~~~~ 633 (1053)
+ +.+..+.+ . +..+.+|+.+.+.+|.+
T Consensus 171 ~-n~i~~ie~~~-~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 171 Y-NRIVDIENDE-LSELISLEELDLGGNSI 198 (414)
T ss_pred c-chhhhhhhhh-hhhccchHHHhccCCch
Confidence 8 45555533 1 46778888888877765
No 137
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.74 E-value=0.00024 Score=78.49 Aligned_cols=146 Identities=18% Similarity=0.234 Sum_probs=85.3
Q ss_pred CCcccccchHHHHHHHHHHhcCCCe-eEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHH
Q 037851 150 KGYEAFESRMSTLKSLQNALLDPDV-TITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQ 228 (1053)
Q Consensus 150 ~~~~~~~gR~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 228 (1053)
.....++|.+...+.+.+++..++. .++.++|++|+||||+|+.+++... . ...+++.+. .....+ +..+..
T Consensus 18 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~--~---~~~~i~~~~-~~~~~i-~~~l~~ 90 (316)
T PHA02544 18 STIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVG--A---EVLFVNGSD-CRIDFV-RNRLTR 90 (316)
T ss_pred CcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhC--c---cceEeccCc-ccHHHH-HHHHHH
Confidence 4456789999999999998876554 5666799999999999999998753 1 133445444 222111 111111
Q ss_pred hCCCCCCCCChhHHHHHHHHHH-hcCCcEEEEEcCCCCc--cc-hhhhcCCCCCCCCCcEEEEEecChHHH-HhhC--CC
Q 037851 229 LGMQFDEESDVPGRARKLYARL-QKENKILIILDNIWED--LD-LEKVGVPSGNDCRGCKVLLTARDRHVL-ESIG--SK 301 (1053)
Q Consensus 229 l~~~~~~~~~~~~~~~~l~~~l-~~~~~~LlvlDdv~~~--~~-~~~l~~~~~~~~~gs~iivTtR~~~v~-~~~~--~~ 301 (1053)
. .... ..+.+-+||+||++.. .+ ...+...+.....++++|+||...... .... ..
T Consensus 91 ~-----------------~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~ 153 (316)
T PHA02544 91 F-----------------ASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCR 153 (316)
T ss_pred H-----------------HHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhce
Confidence 0 0010 0134567899999755 11 122222122223567888888754322 1111 34
Q ss_pred cccccCCCHHHHHHHHHH
Q 037851 302 TLRIDVLNDEEAWTLFKK 319 (1053)
Q Consensus 302 ~~~l~~L~~~~~~~lf~~ 319 (1053)
.+.+...+.++..+++..
T Consensus 154 ~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 154 VIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred EEEeCCCCHHHHHHHHHH
Confidence 667777778877766554
No 138
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.74 E-value=0.00048 Score=79.64 Aligned_cols=179 Identities=17% Similarity=0.177 Sum_probs=105.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhcCC
Q 037851 175 TITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLGMQFDEESDVPGRARKLYARLQKEN 254 (1053)
Q Consensus 175 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 254 (1053)
..+.|+|..|+|||+||+.+++.......-..++|++.. ++..++...+... ....+.+.+. +
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~------~~~~~~~~~~~~~---------~~~~~~~~~~--~ 211 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSE------KFTNDFVNALRNN---------TMEEFKEKYR--S 211 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHH------HHHHHHHHHHHcC---------cHHHHHHHHh--c
Confidence 568999999999999999999998743222345566543 2333444443211 1234444553 3
Q ss_pred cEEEEEcCCCCccc---h-hhhcCCCCC-CCCCcEEEEEecChH--H-------HHhhC-CCcccccCCCHHHHHHHHHH
Q 037851 255 KILIILDNIWEDLD---L-EKVGVPSGN-DCRGCKVLLTARDRH--V-------LESIG-SKTLRIDVLNDEEAWTLFKK 319 (1053)
Q Consensus 255 ~~LlvlDdv~~~~~---~-~~l~~~~~~-~~~gs~iivTtR~~~--v-------~~~~~-~~~~~l~~L~~~~~~~lf~~ 319 (1053)
.-+||+||+..... + +.+...+.. ...|..||+||.... + ...+. ...+++++.+.++-..++++
T Consensus 212 ~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~ 291 (450)
T PRK00149 212 VDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKK 291 (450)
T ss_pred CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHH
Confidence 45899999964311 1 122111100 112445777776432 1 11233 45789999999999999999
Q ss_pred HhCCCCCCccchHHHHHHHHHhCCCchHHH----HHHHHH---hcCCCHHHHHHHHHHh
Q 037851 320 MTGDCAEKGELKSIATDVAKECGGLPIAIV----TLAKAL---RNKTSVSTWKDALRQL 371 (1053)
Q Consensus 320 ~~~~~~~~~~~~~~~~~i~~~~~GlPlai~----~~~~~L---~~~~~~~~w~~~l~~l 371 (1053)
.+... ...--+++..-|++.+.|..-.+. .+..+- ...-+....+.+++.+
T Consensus 292 ~~~~~-~~~l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~~ 349 (450)
T PRK00149 292 KAEEE-GIDLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDL 349 (450)
T ss_pred HHHHc-CCCCCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 88532 112235678889999998876433 332221 1223677778888765
No 139
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.73 E-value=0.00041 Score=73.20 Aligned_cols=162 Identities=19% Similarity=0.254 Sum_probs=102.2
Q ss_pred ccccchHHHHHHHHHHhcCCC---eeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHh
Q 037851 153 EAFESRMSTLKSLQNALLDPD---VTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQL 229 (1053)
Q Consensus 153 ~~~~gR~~~~~~l~~~l~~~~---~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 229 (1053)
+.|.+|+.++..+...+.... +..|.|+|.+|.|||.+.+++.+.... ..+|+++-+.++.+.++..|+.+.
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~-----~~vw~n~~ecft~~~lle~IL~~~ 80 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNL-----ENVWLNCVECFTYAILLEKILNKS 80 (438)
T ss_pred cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCC-----cceeeehHHhccHHHHHHHHHHHh
Confidence 467799999999988886332 345689999999999999999998732 358999999999999999999998
Q ss_pred CCCCCCCCChhH---HHHHHHHHH------h-cCCcEEEEEcCCCCccchhhhcCCC------CCCCCCcEEEEEecCh-
Q 037851 230 GMQFDEESDVPG---RARKLYARL------Q-KENKILIILDNIWEDLDLEKVGVPS------GNDCRGCKVLLTARDR- 292 (1053)
Q Consensus 230 ~~~~~~~~~~~~---~~~~l~~~l------~-~~~~~LlvlDdv~~~~~~~~l~~~~------~~~~~gs~iivTtR~~- 292 (1053)
+....+....+. ........+ . .++.++||||+++...+.+++..+. .-..+ .-+|+++-..
T Consensus 81 ~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~-~i~iils~~~~ 159 (438)
T KOG2543|consen 81 QLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEP-TIVIILSAPSC 159 (438)
T ss_pred ccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCC-ceEEEEecccc
Confidence 632222211111 111111111 1 2568999999998765443321110 01112 2334443322
Q ss_pred -HHHH-hhC---CCcccccCCCHHHHHHHHHHH
Q 037851 293 -HVLE-SIG---SKTLRIDVLNDEEAWTLFKKM 320 (1053)
Q Consensus 293 -~v~~-~~~---~~~~~l~~L~~~~~~~lf~~~ 320 (1053)
.... .+| ..++....-+.+|...++.+.
T Consensus 160 e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 160 EKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred HHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 2221 234 345677778888888888654
No 140
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.72 E-value=3.3e-05 Score=55.86 Aligned_cols=36 Identities=28% Similarity=0.470 Sum_probs=16.2
Q ss_pred ceeEEeecCccccCCCcccccCccCcEEEcCCcccC
Q 037851 529 KLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDGCELE 564 (1053)
Q Consensus 529 ~Lr~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~ 564 (1053)
+|++|++++|.++.+|+.+++|++|++|++++|.++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 344445555544444444444444444444444443
No 141
>CHL00181 cbbX CbbX; Provisional
Probab=97.72 E-value=0.00076 Score=72.26 Aligned_cols=131 Identities=15% Similarity=0.134 Sum_probs=72.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhcCC
Q 037851 175 TITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLGMQFDEESDVPGRARKLYARLQKEN 254 (1053)
Q Consensus 175 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 254 (1053)
..+.++|++|+||||+|+.+++.....+.-...-|+.++. .++.... .+ .. . .....+.+.. .
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~----~~l~~~~---~g-~~-----~-~~~~~~l~~a---~ 122 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR----DDLVGQY---IG-HT-----A-PKTKEVLKKA---M 122 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH----HHHHHHH---hc-cc-----h-HHHHHHHHHc---c
Confidence 3578999999999999999988764322211112444442 1222211 11 10 0 1112222222 2
Q ss_pred cEEEEEcCCCCc-----------cchhhhcCCCCCCCCCcEEEEEecChHHHHh-------h-C-CCcccccCCCHHHHH
Q 037851 255 KILIILDNIWED-----------LDLEKVGVPSGNDCRGCKVLLTARDRHVLES-------I-G-SKTLRIDVLNDEEAW 314 (1053)
Q Consensus 255 ~~LlvlDdv~~~-----------~~~~~l~~~~~~~~~gs~iivTtR~~~v~~~-------~-~-~~~~~l~~L~~~~~~ 314 (1053)
.-+|++|++... .....+...+.....+.+||+++........ . . ...+++.+++.+|..
T Consensus 123 ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~ 202 (287)
T CHL00181 123 GGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELL 202 (287)
T ss_pred CCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHH
Confidence 348999999642 1122222223233345677777754433211 1 1 457899999999999
Q ss_pred HHHHHHhC
Q 037851 315 TLFKKMTG 322 (1053)
Q Consensus 315 ~lf~~~~~ 322 (1053)
+++.+.+.
T Consensus 203 ~I~~~~l~ 210 (287)
T CHL00181 203 QIAKIMLE 210 (287)
T ss_pred HHHHHHHH
Confidence 99887764
No 142
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=0.00088 Score=76.23 Aligned_cols=100 Identities=20% Similarity=0.274 Sum_probs=67.5
Q ss_pred cccccchHHHHHHHHHHhc------CCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHH
Q 037851 152 YEAFESRMSTLKSLQNALL------DPDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGEL 225 (1053)
Q Consensus 152 ~~~~~gR~~~~~~l~~~l~------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 225 (1053)
.++.+|.++.+++|++++. +-+.+++..+|++|||||.+|+.+++... ..| +.++++.-.|..+|-.
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALn--RkF---fRfSvGG~tDvAeIkG-- 482 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALN--RKF---FRFSVGGMTDVAEIKG-- 482 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhC--Cce---EEEeccccccHHhhcc--
Confidence 3556799999999999886 33568999999999999999999999876 333 3467777767665521
Q ss_pred HHHhCCCCCCCCChhHHHHHHHHHHh--cCCcEEEEEcCCCCc
Q 037851 226 ADQLGMQFDEESDVPGRARKLYARLQ--KENKILIILDNIWED 266 (1053)
Q Consensus 226 ~~~l~~~~~~~~~~~~~~~~l~~~l~--~~~~~LlvlDdv~~~ 266 (1053)
....-.... -.++.+.|+ +...-|+.+|.|+..
T Consensus 483 -----HRRTYVGAM---PGkiIq~LK~v~t~NPliLiDEvDKl 517 (906)
T KOG2004|consen 483 -----HRRTYVGAM---PGKIIQCLKKVKTENPLILIDEVDKL 517 (906)
T ss_pred -----cceeeeccC---ChHHHHHHHhhCCCCceEEeehhhhh
Confidence 111111111 123344443 356789999999643
No 143
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.71 E-value=0.0013 Score=75.20 Aligned_cols=180 Identities=13% Similarity=0.154 Sum_probs=105.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhcCC
Q 037851 175 TITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLGMQFDEESDVPGRARKLYARLQKEN 254 (1053)
Q Consensus 175 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 254 (1053)
.-+.|+|..|+|||+||+.+++.......-..++|++. .++..++...+... ....+.+.+. .+
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~---------~~~~f~~~~~-~~ 194 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS------EKFLNDLVDSMKEG---------KLNEFREKYR-KK 194 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHhcc---------cHHHHHHHHH-hc
Confidence 46899999999999999999998764321134667754 34555555554321 1223344442 34
Q ss_pred cEEEEEcCCCCcc---ch-hhhcCCCCC-CCCCcEEEEEec-ChHHHH--------hhC-CCcccccCCCHHHHHHHHHH
Q 037851 255 KILIILDNIWEDL---DL-EKVGVPSGN-DCRGCKVLLTAR-DRHVLE--------SIG-SKTLRIDVLNDEEAWTLFKK 319 (1053)
Q Consensus 255 ~~LlvlDdv~~~~---~~-~~l~~~~~~-~~~gs~iivTtR-~~~v~~--------~~~-~~~~~l~~L~~~~~~~lf~~ 319 (1053)
.-+|++||+.... .+ +.+...+.. ...|..||+||. .+.-.. .+. ...+++++.+.++-..++++
T Consensus 195 ~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~ 274 (440)
T PRK14088 195 VDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARK 274 (440)
T ss_pred CCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHH
Confidence 5689999997431 11 122111110 112446888874 433221 122 45779999999999999998
Q ss_pred HhCCCCCCccchHHHHHHHHHhCCCchHHHHHHHHH------hc-CCCHHHHHHHHHHh
Q 037851 320 MTGDCAEKGELKSIATDVAKECGGLPIAIVTLAKAL------RN-KTSVSTWKDALRQL 371 (1053)
Q Consensus 320 ~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~L------~~-~~~~~~w~~~l~~l 371 (1053)
.+.... -.--+++..-|++.+.|.--.+.-+-..| .+ ..+....+.++..+
T Consensus 275 ~~~~~~-~~l~~ev~~~Ia~~~~~~~R~L~g~l~~l~~~~~~~~~~it~~~a~~~L~~~ 332 (440)
T PRK14088 275 MLEIEH-GELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGEEVDLKEAILLLKDF 332 (440)
T ss_pred HHHhcC-CCCCHHHHHHHHhccccCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 875321 11225678888888887644333222222 12 23666667777655
No 144
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.68 E-value=0.00066 Score=77.52 Aligned_cols=179 Identities=17% Similarity=0.197 Sum_probs=104.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhcCC
Q 037851 175 TITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLGMQFDEESDVPGRARKLYARLQKEN 254 (1053)
Q Consensus 175 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 254 (1053)
..+.|+|..|+|||.||+++++....+..-..++|++.. ++...+...+... ....+.+.+. +
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~------~~~~~~~~~~~~~---------~~~~~~~~~~--~ 199 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSE------KFTNDFVNALRNN---------KMEEFKEKYR--S 199 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHH------HHHHHHHHHHHcC---------CHHHHHHHHH--h
Confidence 468899999999999999999987643212345666432 3344455444321 1233444443 2
Q ss_pred cEEEEEcCCCCccc---h-hhhcCCCCC-CCCCcEEEEEecCh-HHHH--------hhC-CCcccccCCCHHHHHHHHHH
Q 037851 255 KILIILDNIWEDLD---L-EKVGVPSGN-DCRGCKVLLTARDR-HVLE--------SIG-SKTLRIDVLNDEEAWTLFKK 319 (1053)
Q Consensus 255 ~~LlvlDdv~~~~~---~-~~l~~~~~~-~~~gs~iivTtR~~-~v~~--------~~~-~~~~~l~~L~~~~~~~lf~~ 319 (1053)
.-+|||||+..... + +.+...+.. ...|..+|+|+... .... .+. ...+.+++.+.++-..++++
T Consensus 200 ~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~ 279 (405)
T TIGR00362 200 VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQK 279 (405)
T ss_pred CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHH
Confidence 34889999975321 1 112111110 11345577777542 2111 122 35689999999999999999
Q ss_pred HhCCCCCCccchHHHHHHHHHhCCCchHHHH----HHHHH---hcCCCHHHHHHHHHHh
Q 037851 320 MTGDCAEKGELKSIATDVAKECGGLPIAIVT----LAKAL---RNKTSVSTWKDALRQL 371 (1053)
Q Consensus 320 ~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~----~~~~L---~~~~~~~~w~~~l~~l 371 (1053)
.+.... ..--+++...|++.+.|..-.+.- +..+- ...-+.+..+.++...
T Consensus 280 ~~~~~~-~~l~~e~l~~ia~~~~~~~r~l~~~l~~l~~~a~~~~~~it~~~~~~~L~~~ 337 (405)
T TIGR00362 280 KAEEEG-LELPDEVLEFIAKNIRSNVRELEGALNRLLAYASLTGKPITLELAKEALKDL 337 (405)
T ss_pred HHHHcC-CCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 885321 122257788899999987764333 22221 1223566777777654
No 145
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.66 E-value=0.0014 Score=74.62 Aligned_cols=151 Identities=9% Similarity=0.104 Sum_probs=88.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhcCC
Q 037851 175 TITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLGMQFDEESDVPGRARKLYARLQKEN 254 (1053)
Q Consensus 175 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 254 (1053)
.-+.|+|+.|+|||+||+.+++..... ...++|++. ..+...+...+... ....+...+ ..
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~--~~~v~yi~~------~~f~~~~~~~l~~~---------~~~~f~~~~--~~ 202 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRES--GGKILYVRS------ELFTEHLVSAIRSG---------EMQRFRQFY--RN 202 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHc--CCCEEEeeH------HHHHHHHHHHHhcc---------hHHHHHHHc--cc
Confidence 568899999999999999999987632 233556643 33444555544321 112333333 24
Q ss_pred cEEEEEcCCCCccc--h--hhhcCCCCC-CCCCcEEEEEecC-hHH--------HHhhC-CCcccccCCCHHHHHHHHHH
Q 037851 255 KILIILDNIWEDLD--L--EKVGVPSGN-DCRGCKVLLTARD-RHV--------LESIG-SKTLRIDVLNDEEAWTLFKK 319 (1053)
Q Consensus 255 ~~LlvlDdv~~~~~--~--~~l~~~~~~-~~~gs~iivTtR~-~~v--------~~~~~-~~~~~l~~L~~~~~~~lf~~ 319 (1053)
.-+|++||+..... + +.+...+.. ...|..||+||.. +.- ...+. ...+++.+++.++-..++++
T Consensus 203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~ 282 (445)
T PRK12422 203 VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLER 282 (445)
T ss_pred CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHH
Confidence 45888999865421 1 122111110 0134568887754 221 11222 46789999999999999998
Q ss_pred HhCCCCCCccchHHHHHHHHHhCCCc
Q 037851 320 MTGDCAEKGELKSIATDVAKECGGLP 345 (1053)
Q Consensus 320 ~~~~~~~~~~~~~~~~~i~~~~~GlP 345 (1053)
.+.... ..--+++..-|++.+.|.-
T Consensus 283 k~~~~~-~~l~~evl~~la~~~~~di 307 (445)
T PRK12422 283 KAEALS-IRIEETALDFLIEALSSNV 307 (445)
T ss_pred HHHHcC-CCCCHHHHHHHHHhcCCCH
Confidence 875321 1122456666777776543
No 146
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.66 E-value=0.00053 Score=73.54 Aligned_cols=130 Identities=13% Similarity=0.095 Sum_probs=71.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhcCCc
Q 037851 176 ITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLGMQFDEESDVPGRARKLYARLQKENK 255 (1053)
Q Consensus 176 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 255 (1053)
-+.++|++|+||||+|+.+++.....+.....-|+.++. .++ ...+.+.. . .....+.+.. ..
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~l----~~~~~g~~-----~-~~~~~~~~~a---~~ 122 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DDL----VGQYIGHT-----A-PKTKEILKRA---MG 122 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HHH----hHhhcccc-----h-HHHHHHHHHc---cC
Confidence 578999999999999999988765433222222444442 122 22221110 0 1122222222 33
Q ss_pred EEEEEcCCCCc-----------cchhhhcCCCCCCCCCcEEEEEecChHHHHhh--------C-CCcccccCCCHHHHHH
Q 037851 256 ILIILDNIWED-----------LDLEKVGVPSGNDCRGCKVLLTARDRHVLESI--------G-SKTLRIDVLNDEEAWT 315 (1053)
Q Consensus 256 ~LlvlDdv~~~-----------~~~~~l~~~~~~~~~gs~iivTtR~~~v~~~~--------~-~~~~~l~~L~~~~~~~ 315 (1053)
-+|++|++... ..+..+...+.....+.+||+++......... . ...+++.+++.+|...
T Consensus 123 gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~ 202 (284)
T TIGR02880 123 GVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLV 202 (284)
T ss_pred cEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHH
Confidence 58899999632 11223333333333455777776543221111 1 3568999999999999
Q ss_pred HHHHHhC
Q 037851 316 LFKKMTG 322 (1053)
Q Consensus 316 lf~~~~~ 322 (1053)
++...+.
T Consensus 203 I~~~~l~ 209 (284)
T TIGR02880 203 IAGLMLK 209 (284)
T ss_pred HHHHHHH
Confidence 9887764
No 147
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.66 E-value=0.0006 Score=84.87 Aligned_cols=156 Identities=12% Similarity=0.182 Sum_probs=92.5
Q ss_pred CcccccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCC----Ce-EEEEEEcCCcCHHHHHHHH
Q 037851 151 GYEAFESRMSTLKSLQNALLDPDVTITGVYGMGGLGKTTLVKEVARQVKKDKHF----DE-VVFAEVSDTPDIKKVQGEL 225 (1053)
Q Consensus 151 ~~~~~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f----~~-~~wv~~s~~~~~~~~~~~i 225 (1053)
....++||+.++.++++.|......-+.++|++|+|||++|+.++++....... .. +++++++ .+.
T Consensus 171 ~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~------~l~--- 241 (852)
T TIGR03346 171 KLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMG------ALI--- 241 (852)
T ss_pred CCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHH------HHh---
Confidence 445789999999999999976666677799999999999999999986532111 12 2223221 111
Q ss_pred HHHhCCCCCCCCChhHHHHHHHHHHhc-CCcEEEEEcCCCCcc---------chhhhcCCCCCCCCCcEEEEEecChHHH
Q 037851 226 ADQLGMQFDEESDVPGRARKLYARLQK-ENKILIILDNIWEDL---------DLEKVGVPSGNDCRGCKVLLTARDRHVL 295 (1053)
Q Consensus 226 ~~~l~~~~~~~~~~~~~~~~l~~~l~~-~~~~LlvlDdv~~~~---------~~~~l~~~~~~~~~gs~iivTtR~~~v~ 295 (1053)
. ......+.+.....+...+.+ +++.+|++|++.... +...+..+....+ .-++|-+|...+.-
T Consensus 242 -a----~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g-~i~~IgaTt~~e~r 315 (852)
T TIGR03346 242 -A----GAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARG-ELHCIGATTLDEYR 315 (852)
T ss_pred -h----cchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcC-ceEEEEeCcHHHHH
Confidence 0 000011222344455555532 468999999997442 1122223322222 23555555544332
Q ss_pred H----h--h-C-CCcccccCCCHHHHHHHHHHHh
Q 037851 296 E----S--I-G-SKTLRIDVLNDEEAWTLFKKMT 321 (1053)
Q Consensus 296 ~----~--~-~-~~~~~l~~L~~~~~~~lf~~~~ 321 (1053)
. . . . ...+.+...+.++...+++...
T Consensus 316 ~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 316 KYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 1 1 1 1 4567899999999999987664
No 148
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.65 E-value=0.0012 Score=77.29 Aligned_cols=192 Identities=12% Similarity=0.141 Sum_probs=107.8
Q ss_pred CcccccchHHHHHHHHHHhcCCCe-eEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHh
Q 037851 151 GYEAFESRMSTLKSLQNALLDPDV-TITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQL 229 (1053)
Q Consensus 151 ~~~~~~gR~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 229 (1053)
....++|-+..++.+..++..++. ..+.++|+.|+||||+|+.+++..--...... ..+....+ .+.|...-
T Consensus 14 ~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~---~pC~~C~~----C~~i~~~~ 86 (563)
T PRK06647 14 DFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP---MPCGECSS----CKSIDNDN 86 (563)
T ss_pred CHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC---CCCccchH----HHHHHcCC
Confidence 345788999999999999876654 45789999999999999999988642111100 00000000 01111100
Q ss_pred CCC---CCCC--CChhHHHHHHHHHHh----cCCcEEEEEcCCCCc--cchhhhcCCCCCCCCCcEEEEEecC-hHHHHh
Q 037851 230 GMQ---FDEE--SDVPGRARKLYARLQ----KENKILIILDNIWED--LDLEKVGVPSGNDCRGCKVLLTARD-RHVLES 297 (1053)
Q Consensus 230 ~~~---~~~~--~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtR~-~~v~~~ 297 (1053)
..+ .+.. ... +.+..+.+.+. .+++-++|+|++... ..++.+...+......+.+|++|.. ..+...
T Consensus 87 ~~dv~~idgas~~~v-ddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~t 165 (563)
T PRK06647 87 SLDVIEIDGASNTSV-QDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPAT 165 (563)
T ss_pred CCCeEEecCcccCCH-HHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHH
Confidence 000 0000 011 11122222111 356668999999755 3455555444433345566655543 333333
Q ss_pred hC--CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCchHHHHH
Q 037851 298 IG--SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPIAIVTL 351 (1053)
Q Consensus 298 ~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~ 351 (1053)
.. ...+++.+++.++....+.+.+..... .--++....|++.++|.+..+..+
T Consensus 166 I~SRc~~~~f~~l~~~el~~~L~~i~~~egi-~id~eAl~lLa~~s~GdlR~alsl 220 (563)
T PRK06647 166 IKSRCQHFNFRLLSLEKIYNMLKKVCLEDQI-KYEDEALKWIAYKSTGSVRDAYTL 220 (563)
T ss_pred HHHhceEEEecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 22 457899999999999888877642211 122466788999999988544433
No 149
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.65 E-value=7.6e-06 Score=93.71 Aligned_cols=129 Identities=26% Similarity=0.328 Sum_probs=103.2
Q ss_pred CCCceeEEeecCccccCCCcccccCccCcEEEcCCcccCCccc-cCCCCCCcEEEccCCCCcccchhhhccCCCCeeecc
Q 037851 526 GTPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDGCELEDIRV-IGELKDLEILSLQGSKIEQLPREIGQLTQLKLLDLS 604 (1053)
Q Consensus 526 ~~~~Lr~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~~~~-i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~ 604 (1053)
.+..+..+.+..+.+...-..++.+++|.+|++.+|.+..+.. +..+.+|++|++++|.|..+. .+..+..|+.|++.
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLS 148 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheec
Confidence 4566667778888887755568899999999999999999877 999999999999999999887 57888889999999
Q ss_pred CcccccccCcchhcCCccCceeecccccccccccCCcccccCCChhh--hcCCCCCCeEEEEeccCCCC
Q 037851 605 NCSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDE--LKNLSRLTSLEINILDAGIL 671 (1053)
Q Consensus 605 ~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~--L~~l~~L~~L~i~~~~~~~~ 671 (1053)
+ +.+..+. .+..+++|+.+++++|.+. .++. +..+.+|+.+.+..+....+
T Consensus 149 ~-N~i~~~~--~~~~l~~L~~l~l~~n~i~-------------~ie~~~~~~~~~l~~l~l~~n~i~~i 201 (414)
T KOG0531|consen 149 G-NLISDIS--GLESLKSLKLLDLSYNRIV-------------DIENDELSELISLEELDLGGNSIREI 201 (414)
T ss_pred c-Ccchhcc--CCccchhhhcccCCcchhh-------------hhhhhhhhhccchHHHhccCCchhcc
Confidence 9 5677763 2677999999999998762 2333 57777888787777665444
No 150
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.65 E-value=0.00055 Score=76.62 Aligned_cols=175 Identities=15% Similarity=0.212 Sum_probs=100.5
Q ss_pred CCCCcccccchHHHHHHHHHHhc----C---------CCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcC
Q 037851 148 SGKGYEAFESRMSTLKSLQNALL----D---------PDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSD 214 (1053)
Q Consensus 148 ~~~~~~~~~gR~~~~~~l~~~l~----~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~ 214 (1053)
|.....++.|-+..++++.+.+. . ...+-+.++|++|+|||++|+.+++... ..| +.+..
T Consensus 140 p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~--~~f-----i~i~~ 212 (398)
T PTZ00454 140 PDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTT--ATF-----IRVVG 212 (398)
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC--CCE-----EEEeh
Confidence 33445667888888877776543 1 2356789999999999999999998754 222 22221
Q ss_pred CcCHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCcc------------c----hhhhcCCCC-
Q 037851 215 TPDIKKVQGELADQLGMQFDEESDVPGRARKLYARLQKENKILIILDNIWEDL------------D----LEKVGVPSG- 277 (1053)
Q Consensus 215 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~------------~----~~~l~~~~~- 277 (1053)
..+ .....+ ........+........+.+|++|+++... . +..+...+.
T Consensus 213 ----s~l----~~k~~g------e~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~ 278 (398)
T PTZ00454 213 ----SEF----VQKYLG------EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDG 278 (398)
T ss_pred ----HHH----HHHhcc------hhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhc
Confidence 111 111100 011233444444445678999999986420 0 111211111
Q ss_pred -CCCCCcEEEEEecChHHHHh----hC--CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCc
Q 037851 278 -NDCRGCKVLLTARDRHVLES----IG--SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLP 345 (1053)
Q Consensus 278 -~~~~gs~iivTtR~~~v~~~----~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlP 345 (1053)
....+..||+||...+.... .+ ...+++...+.++...+|+.+........+. ...++++.+.|.-
T Consensus 279 ~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dv--d~~~la~~t~g~s 351 (398)
T PTZ00454 279 FDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEV--DLEDFVSRPEKIS 351 (398)
T ss_pred cCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCccc--CHHHHHHHcCCCC
Confidence 12235678888886643322 12 5668899999999888988776432211111 1456677777664
No 151
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.63 E-value=6.1e-05 Score=54.44 Aligned_cols=38 Identities=39% Similarity=0.598 Sum_probs=22.7
Q ss_pred CCcEEEccCCCCcccchhhhccCCCCeeeccCccccccc
Q 037851 574 DLEILSLQGSKIEQLPREIGQLTQLKLLDLSNCSKLKVI 612 (1053)
Q Consensus 574 ~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~ 612 (1053)
+|++|++++|.|+.+|..+++|++|++|++++| .++.+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCC
Confidence 566666666666666666666666666666663 45544
No 152
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.63 E-value=0.0014 Score=77.77 Aligned_cols=196 Identities=14% Similarity=0.101 Sum_probs=109.5
Q ss_pred CcccccchHHHHHHHHHHhcCCCe-eEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHh
Q 037851 151 GYEAFESRMSTLKSLQNALLDPDV-TITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQL 229 (1053)
Q Consensus 151 ~~~~~~gR~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 229 (1053)
....++|.+.....|..++..++. ..+.++|+.|+||||+|+.+++..--..... .. ...+..-+..+.+....
T Consensus 14 ~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~-~~----~~~Cg~C~~C~~i~~g~ 88 (620)
T PRK14948 14 RFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDK-PT----PEPCGKCELCRAIAAGN 88 (620)
T ss_pred cHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCC-CC----CCCCcccHHHHHHhcCC
Confidence 345678999999999888876543 5778999999999999999999864211110 00 01111122222222211
Q ss_pred CCCC---CC-CCChhHHHHHHHHHHh----cCCcEEEEEcCCCCc--cchhhhcCCCCCCCCCcEEEEEecCh-HHHHhh
Q 037851 230 GMQF---DE-ESDVPGRARKLYARLQ----KENKILIILDNIWED--LDLEKVGVPSGNDCRGCKVLLTARDR-HVLESI 298 (1053)
Q Consensus 230 ~~~~---~~-~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtR~~-~v~~~~ 298 (1053)
..+. +. .....+.++.+.+... .+++-++|+|+++.. ..+..+...+-.......+|++|.+. .+...+
T Consensus 89 h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTI 168 (620)
T PRK14948 89 ALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTI 168 (620)
T ss_pred CccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHH
Confidence 1100 00 0011122233333221 245668899999765 34455544333322344555544433 333332
Q ss_pred C--CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCchHHHHHH
Q 037851 299 G--SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPIAIVTLA 352 (1053)
Q Consensus 299 ~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~ 352 (1053)
. ...+++..++.++....+.+.+...... --.+....|++.++|.+..+..+.
T Consensus 169 rSRc~~~~f~~l~~~ei~~~L~~ia~kegi~-is~~al~~La~~s~G~lr~A~~lL 223 (620)
T PRK14948 169 ISRCQRFDFRRIPLEAMVQHLSEIAEKESIE-IEPEALTLVAQRSQGGLRDAESLL 223 (620)
T ss_pred HhheeEEEecCCCHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 2 5677888999999888887766432111 113558889999999886554443
No 153
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.62 E-value=7.9e-06 Score=84.67 Aligned_cols=241 Identities=15% Similarity=0.104 Sum_probs=123.8
Q ss_pred cCCCceeEEeecCcccc-----CCCcccccCccCcEEEcCCcccCC-----c-------cccCCCCCCcEEEccCCCCc-
Q 037851 525 IGTPKLKVLDFTRMRLL-----SLPSSIHLLTDLRTLCLDGCELED-----I-------RVIGELKDLEILSLQGSKIE- 586 (1053)
Q Consensus 525 ~~~~~Lr~L~l~~~~~~-----~lp~~i~~l~~Lr~L~L~~~~~~~-----~-------~~i~~l~~L~~L~l~~~~l~- 586 (1053)
..+..+..++|++|.+. .+.+.+.+.++||..++++--... | +.+-..++|++||||.|-+.
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 45677888888888775 244456667778887777643211 1 23445567777777777544
Q ss_pred ----ccchhhhccCCCCeeeccCcccccccCcc-------------hhcCCccCceeecccccccccccCCcccccCCCh
Q 037851 587 ----QLPREIGQLTQLKLLDLSNCSKLKVIAPN-------------VLSNLSQLEELYMANCSIEWEHLGPGIERSNASL 649 (1053)
Q Consensus 587 ----~lp~~i~~L~~L~~L~l~~~~~l~~~~~~-------------~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 649 (1053)
.+-.-+.++..|++|.|.+| .+...... -+++-+.|+++....|.+.-. ......
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~-------ga~~~A 178 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENG-------GATALA 178 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccc-------cHHHHH
Confidence 22233456677777777765 22211111 123344566665555544100 001122
Q ss_pred hhhcCCCCCCeEEEEeccCCCCCCccccccCceEEEEEcccCCCCCcccccceeeeccCCccccccccccCccceeeccc
Q 037851 650 DELKNLSRLTSLEINILDAGILPSGFFSRKLKRYRIVVGFQWAPFDKYKTRRTLKLKLNSRICLEEWRGMKNVEYLRLDE 729 (1053)
Q Consensus 650 ~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~L~~L~L~~ 729 (1053)
..++..+.|+.+.+..+.+.. ... ......+..+++|+.|+|.+
T Consensus 179 ~~~~~~~~leevr~~qN~I~~--eG~----------------------------------~al~eal~~~~~LevLdl~D 222 (382)
T KOG1909|consen 179 EAFQSHPTLEEVRLSQNGIRP--EGV----------------------------------TALAEALEHCPHLEVLDLRD 222 (382)
T ss_pred HHHHhccccceEEEecccccC--chh----------------------------------HHHHHHHHhCCcceeeeccc
Confidence 233444555555554443211 000 00001112677888888876
Q ss_pred cCCccc----ccccccccccccccEEEeecCCCceeecCCcc--cccCcCCccceeecccccccccc-cccccCccccCC
Q 037851 730 LPGLTN----VLHDLDGEGFAELKHLNVKNNSNFLCIVDPLQ--VRCGAFPMLESLVLQNLINLERI-CHGQLRAESFCN 802 (1053)
Q Consensus 730 ~~~~~~----~~~~l~~~~l~~L~~L~l~~~~~l~~i~~~~~--~~~~~~p~L~~L~l~~~~~L~~~-~~~~~~~~~~~~ 802 (1053)
+.-... ....+ ..+|+|+.|++.+|. +..-+.... .....+|+|+.|.+.++.--.+- ..........|.
T Consensus 223 Ntft~egs~~LakaL--~s~~~L~El~l~dcl-l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~d 299 (382)
T KOG1909|consen 223 NTFTLEGSVALAKAL--SSWPHLRELNLGDCL-LENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPD 299 (382)
T ss_pred chhhhHHHHHHHHHh--cccchheeecccccc-cccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchh
Confidence 421111 01112 356788899998885 221100000 01345899999998875422110 001112234789
Q ss_pred ccEEeEccCC
Q 037851 803 LKTIKVGSCH 812 (1053)
Q Consensus 803 L~~L~i~~c~ 812 (1053)
|.+|.+.+|.
T Consensus 300 L~kLnLngN~ 309 (382)
T KOG1909|consen 300 LEKLNLNGNR 309 (382)
T ss_pred hHHhcCCccc
Confidence 9999999885
No 154
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.61 E-value=0.00092 Score=79.07 Aligned_cols=195 Identities=13% Similarity=0.140 Sum_probs=106.3
Q ss_pred CcccccchHHHHHHHHHHhcCCCe-eEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHh
Q 037851 151 GYEAFESRMSTLKSLQNALLDPDV-TITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQL 229 (1053)
Q Consensus 151 ~~~~~~gR~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 229 (1053)
....++|.+...+.|.+++..+++ ..+.++|+.|+||||+|+.+++..--....+. ..++.......|...-
T Consensus 14 ~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~-------~~c~~c~~c~~i~~g~ 86 (576)
T PRK14965 14 TFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTA-------EPCNVCPPCVEITEGR 86 (576)
T ss_pred CHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCC-------CCCCccHHHHHHhcCC
Confidence 345788999999999999877665 45689999999999999999988532111100 0000001111111000
Q ss_pred CCCC---CCC-CChhHHHHHHHHHHh----cCCcEEEEEcCCCCcc--chhhhcCCCCCCCCCcEEEE-EecChHHHHhh
Q 037851 230 GMQF---DEE-SDVPGRARKLYARLQ----KENKILIILDNIWEDL--DLEKVGVPSGNDCRGCKVLL-TARDRHVLESI 298 (1053)
Q Consensus 230 ~~~~---~~~-~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~iiv-TtR~~~v~~~~ 298 (1053)
..+. +.. ....+.++.+.+.+. .+++-++|+|+++... ..+.+...+-.....+.+|+ ||....+....
T Consensus 87 ~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI 166 (576)
T PRK14965 87 SVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITI 166 (576)
T ss_pred CCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHH
Confidence 0000 000 000011222333221 2455688999997552 34444333322223455554 54444444433
Q ss_pred C--CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCc-hHHHHHHH
Q 037851 299 G--SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLP-IAIVTLAK 353 (1053)
Q Consensus 299 ~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlP-lai~~~~~ 353 (1053)
. ...+++.+++.++....+...+..... .--.+....|++.++|.. .|+..+-.
T Consensus 167 ~SRc~~~~f~~l~~~~i~~~L~~i~~~egi-~i~~~al~~la~~a~G~lr~al~~Ldq 223 (576)
T PRK14965 167 LSRCQRFDFRRIPLQKIVDRLRYIADQEGI-SISDAALALVARKGDGSMRDSLSTLDQ 223 (576)
T ss_pred HHhhhhhhcCCCCHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 2 567899999999998888776642211 112455778999999866 44444433
No 155
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.61 E-value=7.9e-05 Score=89.76 Aligned_cols=156 Identities=15% Similarity=0.205 Sum_probs=93.6
Q ss_pred cccccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcC-C---CCeEEEEEEcCCcCHHHHHHHHHH
Q 037851 152 YEAFESRMSTLKSLQNALLDPDVTITGVYGMGGLGKTTLVKEVARQVKKDK-H---FDEVVFAEVSDTPDIKKVQGELAD 227 (1053)
Q Consensus 152 ~~~~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~---f~~~~wv~~s~~~~~~~~~~~i~~ 227 (1053)
...++||+++++++++.|......-+.++|++|+|||++|+.+++...... . .++.+|. .+...+ +.
T Consensus 185 ~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~-----l~~~~l----la 255 (758)
T PRK11034 185 IDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYS-----LDIGSL----LA 255 (758)
T ss_pred CCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEe-----ccHHHH----hc
Confidence 456899999999999988765555667899999999999999998764322 1 1334432 111111 10
Q ss_pred HhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCc----------cchhhhcCCCCCCCCCcEEEEEecChHHHHh
Q 037851 228 QLGMQFDEESDVPGRARKLYARLQKENKILIILDNIWED----------LDLEKVGVPSGNDCRGCKVLLTARDRHVLES 297 (1053)
Q Consensus 228 ~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~----------~~~~~l~~~~~~~~~gs~iivTtR~~~v~~~ 297 (1053)
......+.+.....+.+.+.+.++.+|++|++... .+...+..++... ..-++|-+|...+....
T Consensus 256 ----G~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~-g~i~vIgATt~~E~~~~ 330 (758)
T PRK11034 256 ----GTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTYQEFSNI 330 (758)
T ss_pred ----ccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC-CCeEEEecCChHHHHHH
Confidence 11111122234455555555456789999999642 1122222232222 23455655554443211
Q ss_pred -------hC-CCcccccCCCHHHHHHHHHHHh
Q 037851 298 -------IG-SKTLRIDVLNDEEAWTLFKKMT 321 (1053)
Q Consensus 298 -------~~-~~~~~l~~L~~~~~~~lf~~~~ 321 (1053)
.. ...+.+.+.+.++..++++...
T Consensus 331 ~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 331 FEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred hhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 11 4578999999999999998664
No 156
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.61 E-value=0.0014 Score=71.03 Aligned_cols=193 Identities=12% Similarity=0.147 Sum_probs=109.7
Q ss_pred ccccchHHHHHHHHHHhcCCCe-eEEEEEcCCCCcHHHHHHHHHHHhhhc--------------CCCCeEEEEEEcCCcC
Q 037851 153 EAFESRMSTLKSLQNALLDPDV-TITGVYGMGGLGKTTLVKEVARQVKKD--------------KHFDEVVFAEVSDTPD 217 (1053)
Q Consensus 153 ~~~~gR~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~--------------~~f~~~~wv~~s~~~~ 217 (1053)
..++|.+..++.+...+..+++ ....++|+.|+||+++|..+++..--. .|-| ..|+.-....+
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPD-l~~i~p~~~~~ 82 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPD-LLWVEPTYQHQ 82 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCC-EEEEecccccc
Confidence 4678999999999999887764 789999999999999999998885321 1112 23332110000
Q ss_pred HHHHHHHHHHHhCC--CCCCCCChhHHHHHHHHHHh----cCCcEEEEEcCCCCcc--chhhhcCCCCCCCCCcEEEEEe
Q 037851 218 IKKVQGELADQLGM--QFDEESDVPGRARKLYARLQ----KENKILIILDNIWEDL--DLEKVGVPSGNDCRGCKVLLTA 289 (1053)
Q Consensus 218 ~~~~~~~i~~~l~~--~~~~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~iivTt 289 (1053)
-+.+-...++..+. .....-.. +.++.+.+.+. .+++-++|+|+++... ...++...+-.-.+..-|++|+
T Consensus 83 g~~~~~~~~~~~~~~~~~~~~I~i-d~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fILi~~ 161 (314)
T PRK07399 83 GKLITASEAEEAGLKRKAPPQIRL-EQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGTLILIAP 161 (314)
T ss_pred ccccchhhhhhccccccccccCcH-HHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEEEEEC
Confidence 00000111111111 00011111 23444554443 3567789999987552 3333332222112233344444
Q ss_pred cChHHHHhhC--CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCchHHHHH
Q 037851 290 RDRHVLESIG--SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPIAIVTL 351 (1053)
Q Consensus 290 R~~~v~~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~ 351 (1053)
+...+..... ...+++.+++.++..+.+.+....... ......++..++|.|..+...
T Consensus 162 ~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~----~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 162 SPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEIL----NINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred ChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccc----hhHHHHHHHHcCCCHHHHHHH
Confidence 4444444333 678999999999999999887532111 111467899999999766543
No 157
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.56 E-value=0.00056 Score=84.71 Aligned_cols=157 Identities=11% Similarity=0.159 Sum_probs=92.1
Q ss_pred CCcccccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCC----CC-eEEEEEEcCCcCHHHHHHH
Q 037851 150 KGYEAFESRMSTLKSLQNALLDPDVTITGVYGMGGLGKTTLVKEVARQVKKDKH----FD-EVVFAEVSDTPDIKKVQGE 224 (1053)
Q Consensus 150 ~~~~~~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----f~-~~~wv~~s~~~~~~~~~~~ 224 (1053)
....+++||+.++.++++.|......-+.++|.+|+|||++|+.++........ .. .+++++++.- +.
T Consensus 175 ~~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l------~a- 247 (857)
T PRK10865 175 GKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGAL------VA- 247 (857)
T ss_pred CCCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhh------hh-
Confidence 344678999999999999998666667789999999999999999998753211 11 2333333321 10
Q ss_pred HHHHhCCCCCCCCChhHHHHHHHHHHh-cCCcEEEEEcCCCCcc---------chhhhcCCCCCCCCCcEEEEEecChHH
Q 037851 225 LADQLGMQFDEESDVPGRARKLYARLQ-KENKILIILDNIWEDL---------DLEKVGVPSGNDCRGCKVLLTARDRHV 294 (1053)
Q Consensus 225 i~~~l~~~~~~~~~~~~~~~~l~~~l~-~~~~~LlvlDdv~~~~---------~~~~l~~~~~~~~~gs~iivTtR~~~v 294 (1053)
......+.+.....+.+.+. .+++.+|++|++.... +...+..+....+ .-++|-||...+.
T Consensus 248 -------g~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g-~l~~IgaTt~~e~ 319 (857)
T PRK10865 248 -------GAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARG-ELHCVGATTLDEY 319 (857)
T ss_pred -------ccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcC-CCeEEEcCCCHHH
Confidence 00001111233444444432 3578999999996542 1223333332222 3456655555443
Q ss_pred HH----h--h-C-CCcccccCCCHHHHHHHHHHHh
Q 037851 295 LE----S--I-G-SKTLRIDVLNDEEAWTLFKKMT 321 (1053)
Q Consensus 295 ~~----~--~-~-~~~~~l~~L~~~~~~~lf~~~~ 321 (1053)
.. . . . ...+.+..-+.++...+++...
T Consensus 320 r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 320 RQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred HHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 11 1 1 1 3356677778899998887654
No 158
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.56 E-value=0.00026 Score=83.05 Aligned_cols=51 Identities=16% Similarity=0.229 Sum_probs=41.8
Q ss_pred CCCcccccchHHHHHHHHHHhcC-----CCeeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 149 GKGYEAFESRMSTLKSLQNALLD-----PDVTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 149 ~~~~~~~~gR~~~~~~l~~~l~~-----~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
+....+++|.++.++++..|+.. ...+++.|+|++|+||||+++.++....
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 45567789999999999988863 2346799999999999999999998754
No 159
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=0.0016 Score=76.39 Aligned_cols=173 Identities=21% Similarity=0.195 Sum_probs=111.1
Q ss_pred cccchH---HHHHHHHHHhcCC---------CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHH
Q 037851 154 AFESRM---STLKSLQNALLDP---------DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKV 221 (1053)
Q Consensus 154 ~~~gR~---~~~~~l~~~l~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~ 221 (1053)
++.|-+ +|+.++++.|.++ -++=+.++|++|.|||-||++++-...+ =|+++|..
T Consensus 312 DVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgV-------PF~svSGS------ 378 (774)
T KOG0731|consen 312 DVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGV-------PFFSVSGS------ 378 (774)
T ss_pred cccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCC-------ceeeechH------
Confidence 455555 4556666777643 2567889999999999999999987663 24555542
Q ss_pred HHHHHHHhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCcc-----------------chhhhcCCCCCCC--CC
Q 037851 222 QGELADQLGMQFDEESDVPGRARKLYARLQKENKILIILDNIWEDL-----------------DLEKVGVPSGNDC--RG 282 (1053)
Q Consensus 222 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~-----------------~~~~l~~~~~~~~--~g 282 (1053)
+..+.+.+.. ...++.+...-+...+.+|.+|+++... .+..+........ .+
T Consensus 379 --EFvE~~~g~~------asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~ 450 (774)
T KOG0731|consen 379 --EFVEMFVGVG------ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKG 450 (774)
T ss_pred --HHHHHhcccc------hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCc
Confidence 2222222111 1455666666666788999999886431 1223333332222 22
Q ss_pred cEEEEEecChHHHHh----hC--CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCchHH
Q 037851 283 CKVLLTARDRHVLES----IG--SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPIAI 348 (1053)
Q Consensus 283 s~iivTtR~~~v~~~----~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai 348 (1053)
--++-+|+..++.+. .| +..+.++.-+.....++|.-++.......+..++++ |+...-|.+=|.
T Consensus 451 vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 451 VIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred EEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHH-HHhcCCCCcHHH
Confidence 344556666665543 23 678889988999999999999875444455566677 999999988654
No 160
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.56 E-value=0.0016 Score=76.69 Aligned_cols=191 Identities=14% Similarity=0.097 Sum_probs=106.3
Q ss_pred CcccccchHHHHHHHHHHhcCCC-eeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHh
Q 037851 151 GYEAFESRMSTLKSLQNALLDPD-VTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQL 229 (1053)
Q Consensus 151 ~~~~~~gR~~~~~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 229 (1053)
....++|.+...+.+.+++..++ ...+.++|+.|+||||+|+.+++..--....+ ...++.-...+.|....
T Consensus 14 ~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~-------~~pC~~C~~C~~i~~g~ 86 (559)
T PRK05563 14 TFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD-------GEPCNECEICKAITNGS 86 (559)
T ss_pred cHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCccHHHHHHhcCC
Confidence 34578999999999999987554 35567899999999999999988754211100 00111111112221110
Q ss_pred CCCC---CC-CCChhHHHHHHHHHHh----cCCcEEEEEcCCCCc--cchhhhcCCCCCCCCCcEEEE-EecChHHHHhh
Q 037851 230 GMQF---DE-ESDVPGRARKLYARLQ----KENKILIILDNIWED--LDLEKVGVPSGNDCRGCKVLL-TARDRHVLESI 298 (1053)
Q Consensus 230 ~~~~---~~-~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iiv-TtR~~~v~~~~ 298 (1053)
..+. +. .......+..+.+... .+++-++|+|+++.. ..+..+...+-.......+|+ ||....+...+
T Consensus 87 ~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI 166 (559)
T PRK05563 87 LMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATI 166 (559)
T ss_pred CCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHH
Confidence 0000 00 0000122233333322 356678899999755 345555443332223444454 44443333322
Q ss_pred C--CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCchHHH
Q 037851 299 G--SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPIAIV 349 (1053)
Q Consensus 299 ~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~ 349 (1053)
. ...+++.+++.++....+...+...... --.+....|++.++|.+..+.
T Consensus 167 ~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~-i~~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 167 LSRCQRFDFKRISVEDIVERLKYILDKEGIE-YEDEALRLIARAAEGGMRDAL 218 (559)
T ss_pred HhHheEEecCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHH
Confidence 2 4578899999999999888877422111 113567788999998775443
No 161
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.54 E-value=4.3e-05 Score=77.22 Aligned_cols=62 Identities=19% Similarity=0.245 Sum_probs=27.7
Q ss_pred cCCccceeecccccccccccccccCccccCCccEEeEccCCCccccCC----chhhhccCCccEEEec
Q 037851 772 AFPMLESLVLQNLINLERICHGQLRAESFCNLKTIKVGSCHKLKNLFS----FSIAKFLPQLKTIEVT 835 (1053)
Q Consensus 772 ~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~----~~~~~~l~~L~~L~l~ 835 (1053)
.||.+-.|.+.. +++.+|-. .-....||.|..|.+...|-...+-. .-.+..+++++.|.=+
T Consensus 222 ~~p~~~~LnL~~-~~idswas-vD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 222 PFPSLSCLNLGA-NNIDSWAS-VDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred CCCcchhhhhcc-cccccHHH-HHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 455555555544 33444311 11223466666666655543332211 1123456666666544
No 162
>PRK06620 hypothetical protein; Validated
Probab=97.53 E-value=0.00047 Score=70.43 Aligned_cols=132 Identities=17% Similarity=0.016 Sum_probs=78.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhcCC
Q 037851 175 TITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLGMQFDEESDVPGRARKLYARLQKEN 254 (1053)
Q Consensus 175 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 254 (1053)
+.+.|+|++|+|||+|++.+++... . .++. .... . . +.. ..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~--~-----~~~~--~~~~---------------------~-~------~~~--~~ 85 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN--A-----YIIK--DIFF---------------------N-E------EIL--EK 85 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC--C-----EEcc--hhhh---------------------c-h------hHH--hc
Confidence 5689999999999999998776542 1 1211 0000 0 0 011 12
Q ss_pred cEEEEEcCCCCccc--hhhhcCCCCCCCCCcEEEEEecChH-------HHHhhC-CCcccccCCCHHHHHHHHHHHhCCC
Q 037851 255 KILIILDNIWEDLD--LEKVGVPSGNDCRGCKVLLTARDRH-------VLESIG-SKTLRIDVLNDEEAWTLFKKMTGDC 324 (1053)
Q Consensus 255 ~~LlvlDdv~~~~~--~~~l~~~~~~~~~gs~iivTtR~~~-------v~~~~~-~~~~~l~~L~~~~~~~lf~~~~~~~ 324 (1053)
.-++++||+....+ +..+...+. ..|..||+|++... ....+. ..++++++++.++-..++++.+...
T Consensus 86 ~d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~ 163 (214)
T PRK06620 86 YNAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS 163 (214)
T ss_pred CCEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc
Confidence 35788899974322 111111111 24668888887442 222333 5689999999999888888877421
Q ss_pred CCCccchHHHHHHHHHhCCCchHH
Q 037851 325 AEKGELKSIATDVAKECGGLPIAI 348 (1053)
Q Consensus 325 ~~~~~~~~~~~~i~~~~~GlPlai 348 (1053)
.-.--+++..-|++.+.|.--.+
T Consensus 164 -~l~l~~ev~~~L~~~~~~d~r~l 186 (214)
T PRK06620 164 -SVTISRQIIDFLLVNLPREYSKI 186 (214)
T ss_pred -CCCCCHHHHHHHHHHccCCHHHH
Confidence 11122567777888877754433
No 163
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.52 E-value=0.00083 Score=75.57 Aligned_cols=135 Identities=24% Similarity=0.192 Sum_probs=87.0
Q ss_pred hHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhCCCCCCCC
Q 037851 158 RMSTLKSLQNALLDPDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLGMQFDEES 237 (1053)
Q Consensus 158 R~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~ 237 (1053)
|..-+.++.+.+..... ++.|.|+-++||||+++.+....... .+++..-+......-..+..+
T Consensus 22 ~~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~~-----~iy~~~~d~~~~~~~l~d~~~---------- 85 (398)
T COG1373 22 RRKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLLEE-----IIYINFDDLRLDRIELLDLLR---------- 85 (398)
T ss_pred HHhhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCCcc-----eEEEEecchhcchhhHHHHHH----------
Confidence 44455666666543322 99999999999999997776655422 555554433221111111111
Q ss_pred ChhHHHHHHHHHHhcCCcEEEEEcCCCCccchhhhcCCCCCCCCCcEEEEEecChHHHH-----h-hC-CCcccccCCCH
Q 037851 238 DVPGRARKLYARLQKENKILIILDNIWEDLDLEKVGVPSGNDCRGCKVLLTARDRHVLE-----S-IG-SKTLRIDVLND 310 (1053)
Q Consensus 238 ~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~-----~-~~-~~~~~l~~L~~ 310 (1053)
.....- ..++..|+||.|....+|......+.+.++. +|++|+-+..... . .| ...+++-||+.
T Consensus 86 -------~~~~~~-~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF 156 (398)
T COG1373 86 -------AYIELK-EREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSF 156 (398)
T ss_pred -------HHHHhh-ccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCH
Confidence 111111 2277899999999999998877777766655 8888887765443 2 23 66789999999
Q ss_pred HHHHHHH
Q 037851 311 EEAWTLF 317 (1053)
Q Consensus 311 ~~~~~lf 317 (1053)
.|-..+.
T Consensus 157 ~Efl~~~ 163 (398)
T COG1373 157 REFLKLK 163 (398)
T ss_pred HHHHhhc
Confidence 9987654
No 164
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.52 E-value=6.5e-06 Score=97.45 Aligned_cols=121 Identities=20% Similarity=0.159 Sum_probs=76.5
Q ss_pred ccCccceeeccccCCcccc--cccccccccccccEEEeecC-CCceeecCCcccccCcCCccceeecccccccccccccc
Q 037851 718 GMKNVEYLRLDELPGLTNV--LHDLDGEGFAELKHLNVKNN-SNFLCIVDPLQVRCGAFPMLESLVLQNLINLERICHGQ 794 (1053)
Q Consensus 718 ~l~~L~~L~L~~~~~~~~~--~~~l~~~~l~~L~~L~l~~~-~~l~~i~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~ 794 (1053)
..++|+.|.+.+|....+. .+.. ...++|+.|+++++ .................++|+.|++..+..+.......
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~ 263 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALA--LKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSA 263 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHH--hhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHH
Confidence 4678888888888766652 2222 46788999998873 21111111111123455888888888877654431111
Q ss_pred cCccccCCccEEeEccCCCccccCCchhhhccCCccEEEecccchhh
Q 037851 795 LRAESFCNLKTIKVGSCHKLKNLFSFSIAKFLPQLKTIEVTECKIVE 841 (1053)
Q Consensus 795 ~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~ 841 (1053)
+ ...+++|+.|.+.+|..+++..-....+.+++|++|++++|..+.
T Consensus 264 l-~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~ 309 (482)
T KOG1947|consen 264 L-ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLT 309 (482)
T ss_pred H-HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccch
Confidence 1 123789999998889876654333456778999999999998763
No 165
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.52 E-value=0.00054 Score=77.14 Aligned_cols=173 Identities=16% Similarity=0.215 Sum_probs=99.4
Q ss_pred CCcccccchHHHHHHHHHHhc----C---------CCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCc
Q 037851 150 KGYEAFESRMSTLKSLQNALL----D---------PDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTP 216 (1053)
Q Consensus 150 ~~~~~~~gR~~~~~~l~~~l~----~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 216 (1053)
....++.|.+..++++.+.+. . ...+-+.++|++|+|||++|+.+++... ..| +.+...
T Consensus 180 ~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~--~~f-----i~V~~s- 251 (438)
T PTZ00361 180 ESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETS--ATF-----LRVVGS- 251 (438)
T ss_pred CCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhC--CCE-----EEEecc-
Confidence 444567888888888877653 1 1345688999999999999999999764 233 222211
Q ss_pred CHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCccc----------------hhhhcCCCC--C
Q 037851 217 DIKKVQGELADQLGMQFDEESDVPGRARKLYARLQKENKILIILDNIWEDLD----------------LEKVGVPSG--N 278 (1053)
Q Consensus 217 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~----------------~~~l~~~~~--~ 278 (1053)
++. ....+ ........+.+......+.+|+||+++.... ...+...+. .
T Consensus 252 ---eL~----~k~~G------e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~ 318 (438)
T PTZ00361 252 ---ELI----QKYLG------DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFD 318 (438)
T ss_pred ---hhh----hhhcc------hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhc
Confidence 111 11100 0112233444444346788999999753210 111111111 1
Q ss_pred CCCCcEEEEEecChHHHHh--h--C--CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCc
Q 037851 279 DCRGCKVLLTARDRHVLES--I--G--SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLP 345 (1053)
Q Consensus 279 ~~~gs~iivTtR~~~v~~~--~--~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlP 345 (1053)
...+.+||+||...+.... . + ...+++...+.++..++|+.++.......+ .....++..+.|+-
T Consensus 319 ~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~d--vdl~~la~~t~g~s 389 (438)
T PTZ00361 319 SRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAED--VDLEEFIMAKDELS 389 (438)
T ss_pred ccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcC--cCHHHHHHhcCCCC
Confidence 1235678888886655443 1 2 567899999999999999988753221111 11345666666654
No 166
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.52 E-value=3.2e-05 Score=92.21 Aligned_cols=130 Identities=19% Similarity=0.265 Sum_probs=81.7
Q ss_pred cceEEeeccCCCCCCCCCcccccCCCceeEEeecCcccc--CCCcccccCccCcEEEcCCcccCCccccCCCCCCcEEEc
Q 037851 503 CSRISLYDNNINSPLKIPDNIFIGTPKLKVLDFTRMRLL--SLPSSIHLLTDLRTLCLDGCELEDIRVIGELKDLEILSL 580 (1053)
Q Consensus 503 ~~~l~l~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~--~lp~~i~~l~~Lr~L~L~~~~~~~~~~i~~l~~L~~L~l 580 (1053)
.+++.+.+...- ...-|..+...+|.|+.|.+++-.+. .+-.-..++++|+.||+++++++.+..++.|+||++|.+
T Consensus 124 L~~LdI~G~~~~-s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~m 202 (699)
T KOG3665|consen 124 LQHLDISGSELF-SNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLSM 202 (699)
T ss_pred hhhcCccccchh-hccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHhc
Confidence 555555442211 11234445566888888888876654 223334577888888888888888888888888888888
Q ss_pred cCCCCcccc--hhhhccCCCCeeeccCccccccc--Cc---chhcCCccCceeecccccc
Q 037851 581 QGSKIEQLP--REIGQLTQLKLLDLSNCSKLKVI--AP---NVLSNLSQLEELYMANCSI 633 (1053)
Q Consensus 581 ~~~~l~~lp--~~i~~L~~L~~L~l~~~~~l~~~--~~---~~l~~l~~L~~L~l~~~~~ 633 (1053)
++=.+..-+ ..+.+|++|++||+|........ .. +.-..|++|+.||.+++.+
T Consensus 203 rnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 203 RNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred cCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence 876665332 35678888888888863222111 00 0113477778887776655
No 167
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.52 E-value=0.003 Score=73.27 Aligned_cols=179 Identities=12% Similarity=0.115 Sum_probs=102.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhcCC
Q 037851 175 TITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLGMQFDEESDVPGRARKLYARLQKEN 254 (1053)
Q Consensus 175 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 254 (1053)
..+.|+|..|+|||.|++.+++.......-..++|++. .++..++...+.. .....+.+++. +
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yita------eef~~el~~al~~---------~~~~~f~~~y~--~ 377 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSS------EEFTNEFINSIRD---------GKGDSFRRRYR--E 377 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH------HHHHHHHHHHHHh---------ccHHHHHHHhh--c
Confidence 45899999999999999999998763222234566644 3344444443321 11233444443 3
Q ss_pred cEEEEEcCCCCc---cchh-hhcCCCCC-CCCCcEEEEEecCh---------HHHHhhC-CCcccccCCCHHHHHHHHHH
Q 037851 255 KILIILDNIWED---LDLE-KVGVPSGN-DCRGCKVLLTARDR---------HVLESIG-SKTLRIDVLNDEEAWTLFKK 319 (1053)
Q Consensus 255 ~~LlvlDdv~~~---~~~~-~l~~~~~~-~~~gs~iivTtR~~---------~v~~~~~-~~~~~l~~L~~~~~~~lf~~ 319 (1053)
-=+|||||+... ..|. .+...+.. ...|..|||||+.. .+...+. ..++++++.+.+.-..++++
T Consensus 378 ~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~k 457 (617)
T PRK14086 378 MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRK 457 (617)
T ss_pred CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHH
Confidence 458889999654 2222 12111111 12355688888753 1222333 66789999999999999998
Q ss_pred HhCCCCCCccchHHHHHHHHHhCCCchHHHHHHHHH------hc-CCCHHHHHHHHHHh
Q 037851 320 MTGDCAEKGELKSIATDVAKECGGLPIAIVTLAKAL------RN-KTSVSTWKDALRQL 371 (1053)
Q Consensus 320 ~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~L------~~-~~~~~~w~~~l~~l 371 (1053)
++.... -.--+++..-|++.+.+..-.+.-+-..| .+ .-+...-+.+++.+
T Consensus 458 ka~~r~-l~l~~eVi~yLa~r~~rnvR~LegaL~rL~a~a~~~~~~itl~la~~vL~~~ 515 (617)
T PRK14086 458 KAVQEQ-LNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLRDL 515 (617)
T ss_pred HHHhcC-CCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 885321 12225677778887776643333222222 11 23555556666654
No 168
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.51 E-value=0.00035 Score=65.82 Aligned_cols=69 Identities=20% Similarity=0.247 Sum_probs=41.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhcCC-c
Q 037851 177 TGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLGMQFDEESDVPGRARKLYARLQKEN-K 255 (1053)
Q Consensus 177 i~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~-~ 255 (1053)
|.|+|+.|+||||+|+.+++.... ..+.++.+...+. ...+.......+.+...... +
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~-----~~~~i~~~~~~~~----------------~~~~~~~~i~~~~~~~~~~~~~ 59 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGF-----PFIEIDGSELISS----------------YAGDSEQKIRDFFKKAKKSAKP 59 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTS-----EEEEEETTHHHTS----------------STTHHHHHHHHHHHHHHHTSTS
T ss_pred CEEECcCCCCeeHHHHHHHhhccc-----ccccccccccccc----------------cccccccccccccccccccccc
Confidence 579999999999999999999751 2344443322110 11111123333444443344 8
Q ss_pred EEEEEcCCCCc
Q 037851 256 ILIILDNIWED 266 (1053)
Q Consensus 256 ~LlvlDdv~~~ 266 (1053)
.+|++||++..
T Consensus 60 ~vl~iDe~d~l 70 (132)
T PF00004_consen 60 CVLFIDEIDKL 70 (132)
T ss_dssp EEEEEETGGGT
T ss_pred eeeeeccchhc
Confidence 99999999644
No 169
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.44 E-value=0.00048 Score=65.83 Aligned_cols=90 Identities=24% Similarity=0.161 Sum_probs=51.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhcCC
Q 037851 175 TITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLGMQFDEESDVPGRARKLYARLQKEN 254 (1053)
Q Consensus 175 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 254 (1053)
..+.|+|++|+||||+|+.++....... ..+++++.+........... ...................+.......+
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILEEVLDQLL--LIIVGGKKASGSGELRLRLALALARKLK 78 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEccccCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHHhcC
Confidence 5789999999999999999998876322 24566655543322111111 1111111111222233444455554333
Q ss_pred cEEEEEcCCCCccc
Q 037851 255 KILIILDNIWEDLD 268 (1053)
Q Consensus 255 ~~LlvlDdv~~~~~ 268 (1053)
..+|++|+++....
T Consensus 79 ~~viiiDei~~~~~ 92 (148)
T smart00382 79 PDVLILDEITSLLD 92 (148)
T ss_pred CCEEEEECCcccCC
Confidence 59999999987644
No 170
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.0037 Score=65.78 Aligned_cols=183 Identities=20% Similarity=0.257 Sum_probs=113.6
Q ss_pred CCCCCcccccchHHHHHHHHHHhc----C---------CCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEc
Q 037851 147 SSGKGYEAFESRMSTLKSLQNALL----D---------PDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVS 213 (1053)
Q Consensus 147 ~~~~~~~~~~gR~~~~~~l~~~l~----~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s 213 (1053)
.|...+..+-|-++++++|.+... + ..++=|.++|++|.|||-||++|+++.. .. |+.|.
T Consensus 145 ~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~--At-----FIrvv 217 (406)
T COG1222 145 KPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTD--AT-----FIRVV 217 (406)
T ss_pred CCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccC--ce-----EEEec
Confidence 345566778888999998888764 1 2357789999999999999999999765 22 34443
Q ss_pred CCcCHHHHHHHHHHH-hCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCcc--------------c--hhhhcCCC
Q 037851 214 DTPDIKKVQGELADQ-LGMQFDEESDVPGRARKLYARLQKENKILIILDNIWEDL--------------D--LEKVGVPS 276 (1053)
Q Consensus 214 ~~~~~~~~~~~i~~~-l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--------------~--~~~l~~~~ 276 (1053)
.. ++.+. +|.. ...+..+++.-+...+..|++|.++... + .-++...+
T Consensus 218 gS--------ElVqKYiGEG-------aRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~ql 282 (406)
T COG1222 218 GS--------ELVQKYIGEG-------ARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQL 282 (406)
T ss_pred cH--------HHHHHHhccc-------hHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhc
Confidence 32 22222 1211 1455666666667889999999986431 0 11222222
Q ss_pred CCC--CCCcEEEEEecChHHHHh----hC--CCcccccCCCHHHHHHHHHHHhCC--CCCCccchHHHHHHHHHhCCCc-
Q 037851 277 GND--CRGCKVLLTARDRHVLES----IG--SKTLRIDVLNDEEAWTLFKKMTGD--CAEKGELKSIATDVAKECGGLP- 345 (1053)
Q Consensus 277 ~~~--~~gs~iivTtR~~~v~~~----~~--~~~~~l~~L~~~~~~~lf~~~~~~--~~~~~~~~~~~~~i~~~~~GlP- 345 (1053)
... ...-|||..|--.++.+- -| +..|++..-+.+.-.++|+=|+.. ..+.-+ .+.|++.|.|.-
T Consensus 283 DGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd----~e~la~~~~g~sG 358 (406)
T COG1222 283 DGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVD----LELLARLTEGFSG 358 (406)
T ss_pred cCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcC----HHHHHHhcCCCch
Confidence 221 235689998887665542 23 677888866666667888877752 223333 455777777765
Q ss_pred ---hHHHHHHHHH
Q 037851 346 ---IAIVTLAKAL 355 (1053)
Q Consensus 346 ---lai~~~~~~L 355 (1053)
-|+.+=|+++
T Consensus 359 AdlkaictEAGm~ 371 (406)
T COG1222 359 ADLKAICTEAGMF 371 (406)
T ss_pred HHHHHHHHHHhHH
Confidence 3444445554
No 171
>CHL00176 ftsH cell division protein; Validated
Probab=97.39 E-value=0.0019 Score=76.65 Aligned_cols=169 Identities=16% Similarity=0.241 Sum_probs=96.5
Q ss_pred ccccchHHHHHHH---HHHhcCC---------CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHH
Q 037851 153 EAFESRMSTLKSL---QNALLDP---------DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKK 220 (1053)
Q Consensus 153 ~~~~gR~~~~~~l---~~~l~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~ 220 (1053)
.++.|.++.++++ ++.+.++ ..+-|.++|++|+|||++|+.++..... . |+.++.. +
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~--p-----~i~is~s----~ 251 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEV--P-----FFSISGS----E 251 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC--C-----eeeccHH----H
Confidence 4566666555444 4444422 2356899999999999999999987542 1 2333211 1
Q ss_pred HHHHHHHHhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCcc------------c----hhhhcCCCC--CCCCC
Q 037851 221 VQGELADQLGMQFDEESDVPGRARKLYARLQKENKILIILDNIWEDL------------D----LEKVGVPSG--NDCRG 282 (1053)
Q Consensus 221 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~------------~----~~~l~~~~~--~~~~g 282 (1053)
+.... .+. .......+.+......+.+|++||++... . +..+...+. ....+
T Consensus 252 f~~~~---~g~-------~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ 321 (638)
T CHL00176 252 FVEMF---VGV-------GAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKG 321 (638)
T ss_pred HHHHh---hhh-------hHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCC
Confidence 11100 010 01223444444445788999999996431 1 222222221 12345
Q ss_pred cEEEEEecChHHHHh----hC--CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCC
Q 037851 283 CKVLLTARDRHVLES----IG--SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGL 344 (1053)
Q Consensus 283 s~iivTtR~~~v~~~----~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~Gl 344 (1053)
..||.||...+.... .+ ...+.+...+.++-.++++.++......+ ......+++.+.|.
T Consensus 322 ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~--d~~l~~lA~~t~G~ 387 (638)
T CHL00176 322 VIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSP--DVSLELIARRTPGF 387 (638)
T ss_pred eeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccch--hHHHHHHHhcCCCC
Confidence 677777776554332 12 46788999999999999998875422111 23456788888773
No 172
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.36 E-value=0.0026 Score=69.45 Aligned_cols=166 Identities=13% Similarity=0.104 Sum_probs=88.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhCCC-----CCC--CCChhHHHHHH
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLGMQ-----FDE--ESDVPGRARKL 246 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~-----~~~--~~~~~~~~~~l 246 (1053)
...+.++|+.|+||||+|+.+++..--....+. .....-...+.+...-..+ ... .....+.++.+
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~-------~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l 94 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGG-------GACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVREL 94 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCC-------CCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHH
Confidence 456789999999999999999988642110000 0000000011111000000 000 00001222333
Q ss_pred HHHHh----cCCcEEEEEcCCCCc--cchhhhcCCCCCCCCCcEEEEEecChH-HHHhhC--CCcccccCCCHHHHHHHH
Q 037851 247 YARLQ----KENKILIILDNIWED--LDLEKVGVPSGNDCRGCKVLLTARDRH-VLESIG--SKTLRIDVLNDEEAWTLF 317 (1053)
Q Consensus 247 ~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtR~~~-v~~~~~--~~~~~l~~L~~~~~~~lf 317 (1053)
.+.+. .+++-++|+|+++.. .....+...+-.-..++.+|+||.+.+ +..... ...+.+.+++.+++.+.+
T Consensus 95 ~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L 174 (328)
T PRK05707 95 VSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWL 174 (328)
T ss_pred HHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHH
Confidence 33332 244455577999765 334444333322224667777777653 333322 567899999999999998
Q ss_pred HHHhCCCCCCccchHHHHHHHHHhCCCchHHHHH
Q 037851 318 KKMTGDCAEKGELKSIATDVAKECGGLPIAIVTL 351 (1053)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~ 351 (1053)
.+.... . .++.+..++..++|.|..+..+
T Consensus 175 ~~~~~~-~----~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 175 QQALPE-S----DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred HHhccc-C----ChHHHHHHHHHcCCCHHHHHHH
Confidence 876421 1 1233567889999999766544
No 173
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.0082 Score=69.10 Aligned_cols=154 Identities=16% Similarity=0.192 Sum_probs=90.8
Q ss_pred ccccchHHHHHHHHHHhc------CCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHH
Q 037851 153 EAFESRMSTLKSLQNALL------DPDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELA 226 (1053)
Q Consensus 153 ~~~~gR~~~~~~l~~~l~------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 226 (1053)
.+.+|-++.+++|++.|. .-+.+++.+||++|||||+|++.+++... ..| +-++++...|..++-.
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~--Rkf---vR~sLGGvrDEAEIRG--- 394 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALG--RKF---VRISLGGVRDEAEIRG--- 394 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhC--CCE---EEEecCccccHHHhcc---
Confidence 456788999999999886 23458999999999999999999999876 344 3355555555554421
Q ss_pred HHhCCCCCCCCChhHHHHHHHHHHh--cCCcEEEEEcCCCCcc---------chh---------hhcCCCCCC-CCCcEE
Q 037851 227 DQLGMQFDEESDVPGRARKLYARLQ--KENKILIILDNIWEDL---------DLE---------KVGVPSGND-CRGCKV 285 (1053)
Q Consensus 227 ~~l~~~~~~~~~~~~~~~~l~~~l~--~~~~~LlvlDdv~~~~---------~~~---------~l~~~~~~~-~~gs~i 285 (1053)
....-..... .++.+.++ +.+.-+++||.++... .+- .|...+... --=|.|
T Consensus 395 ----HRRTYIGamP---GrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~V 467 (782)
T COG0466 395 ----HRRTYIGAMP---GKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKV 467 (782)
T ss_pred ----ccccccccCC---hHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhhe
Confidence 1111111111 22223332 4678899999996431 111 111111100 012444
Q ss_pred E-EEecCh-H-HH-HhhC-CCcccccCCCHHHHHHHHHHHh
Q 037851 286 L-LTARDR-H-VL-ESIG-SKTLRIDVLNDEEAWTLFKKMT 321 (1053)
Q Consensus 286 i-vTtR~~-~-v~-~~~~-~~~~~l~~L~~~~~~~lf~~~~ 321 (1053)
+ |||-+. + +- ..+. ..+|++.+.+++|=.++-+++.
T Consensus 468 mFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 468 MFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 4 333322 2 11 1122 5789999999999988888776
No 174
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.0088 Score=70.92 Aligned_cols=114 Identities=17% Similarity=0.193 Sum_probs=67.8
Q ss_pred cccchHHHHHHHHHHhc-------CC--CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHH
Q 037851 154 AFESRMSTLKSLQNALL-------DP--DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGE 224 (1053)
Q Consensus 154 ~~~gR~~~~~~l~~~l~-------~~--~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 224 (1053)
.++|.+..++.+.+.+. ++ ...+....|+.|||||-||+.++...-.. =+..+.++.|+..... .
T Consensus 492 rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~--e~aliR~DMSEy~EkH----s 565 (786)
T COG0542 492 RVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGD--EQALIRIDMSEYMEKH----S 565 (786)
T ss_pred ceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCC--CccceeechHHHHHHH----H
Confidence 57898999998888875 22 34677889999999999999999876311 1445555555533222 2
Q ss_pred HHHHhCCCCCCCCChhHHHHHHHHHHhcCCcE-EEEEcCCCCc--cchhhhcCCC
Q 037851 225 LADQLGMQFDEESDVPGRARKLYARLQKENKI-LIILDNIWED--LDLEKVGVPS 276 (1053)
Q Consensus 225 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~-LlvlDdv~~~--~~~~~l~~~~ 276 (1053)
+.+-+|.+..-.. . +....+-+.++ .++| +|.||+|... +..+-+...+
T Consensus 566 VSrLIGaPPGYVG-y-eeGG~LTEaVR-r~PySViLlDEIEKAHpdV~nilLQVl 617 (786)
T COG0542 566 VSRLIGAPPGYVG-Y-EEGGQLTEAVR-RKPYSVILLDEIEKAHPDVFNLLLQVL 617 (786)
T ss_pred HHHHhCCCCCCce-e-ccccchhHhhh-cCCCeEEEechhhhcCHHHHHHHHHHh
Confidence 2222333322111 1 11334555554 5666 7778999755 3344444433
No 175
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.29 E-value=0.017 Score=58.26 Aligned_cols=180 Identities=17% Similarity=0.205 Sum_probs=104.8
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEc-CCcCHHHHHHHHHHHhCCCCCCCCC--hhHHHHHHH
Q 037851 171 DPDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVS-DTPDIKKVQGELADQLGMQFDEESD--VPGRARKLY 247 (1053)
Q Consensus 171 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s-~~~~~~~~~~~i~~~l~~~~~~~~~--~~~~~~~l~ 247 (1053)
.++.+++.++|.-|.|||+++|......... .++-|.+. +..+...+...|+..+..+...... .+.....+.
T Consensus 48 ~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d----~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~ 123 (269)
T COG3267 48 ADGQGILAVTGEVGSGKTVLRRALLASLNED----QVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELA 123 (269)
T ss_pred hcCCceEEEEecCCCchhHHHHHHHHhcCCC----ceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHH
Confidence 3445799999999999999999665554321 12223333 3456778888888888763222111 112233444
Q ss_pred HHHhcCCc-EEEEEcCCCCc--cchhhhcCC--CC-CCCCCcEEEEEecCh-------HHHHhhC--CCc-ccccCCCHH
Q 037851 248 ARLQKENK-ILIILDNIWED--LDLEKVGVP--SG-NDCRGCKVLLTARDR-------HVLESIG--SKT-LRIDVLNDE 311 (1053)
Q Consensus 248 ~~l~~~~~-~LlvlDdv~~~--~~~~~l~~~--~~-~~~~gs~iivTtR~~-------~v~~~~~--~~~-~~l~~L~~~ 311 (1053)
.-..+++| ..+++||.... ...+.+... .. +...--+|+..-..+ .+....+ ... |++.|++.+
T Consensus 124 al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~ 203 (269)
T COG3267 124 ALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEA 203 (269)
T ss_pred HHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChH
Confidence 44456777 99999998654 223322111 11 111111233322211 1111222 233 899999999
Q ss_pred HHHHHHHHHhCCCCCCc--cchHHHHHHHHHhCCCchHHHHHHHH
Q 037851 312 EAWTLFKKMTGDCAEKG--ELKSIATDVAKECGGLPIAIVTLAKA 354 (1053)
Q Consensus 312 ~~~~lf~~~~~~~~~~~--~~~~~~~~i~~~~~GlPlai~~~~~~ 354 (1053)
+...+++.+......+. --.+....|.....|.|.+|..++..
T Consensus 204 ~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 204 ETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred HHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHHH
Confidence 99999888775322222 22456788999999999999877654
No 176
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.28 E-value=0.041 Score=68.51 Aligned_cols=105 Identities=19% Similarity=0.247 Sum_probs=58.6
Q ss_pred cccchHHHHHHHHHHhc-------CCC--eeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHH
Q 037851 154 AFESRMSTLKSLQNALL-------DPD--VTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGE 224 (1053)
Q Consensus 154 ~~~gR~~~~~~l~~~l~-------~~~--~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 224 (1053)
.++|.+..++.+...+. +++ ..++.++|+.|+|||++|+.+++.... .-...+.++.+..... . .
T Consensus 569 ~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~--~~~~~i~id~se~~~~-~---~ 642 (857)
T PRK10865 569 RVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFD--SDDAMVRIDMSEFMEK-H---S 642 (857)
T ss_pred eEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhc--CCCcEEEEEhHHhhhh-h---h
Confidence 46788888887777664 122 247889999999999999999987542 1223455555442211 1 1
Q ss_pred HHHHhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCc
Q 037851 225 LADQLGMQFDEESDVPGRARKLYARLQKENKILIILDNIWED 266 (1053)
Q Consensus 225 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~ 266 (1053)
+.+-+|.. +..... .....+.+.+.....-+|+|||+...
T Consensus 643 ~~~LiG~~-pgy~g~-~~~g~l~~~v~~~p~~vLllDEieka 682 (857)
T PRK10865 643 VSRLVGAP-PGYVGY-EEGGYLTEAVRRRPYSVILLDEVEKA 682 (857)
T ss_pred HHHHhCCC-Cccccc-chhHHHHHHHHhCCCCeEEEeehhhC
Confidence 11222322 111111 11122334443334468999999744
No 177
>PRK10536 hypothetical protein; Provisional
Probab=97.28 E-value=0.0025 Score=65.33 Aligned_cols=56 Identities=18% Similarity=0.176 Sum_probs=42.2
Q ss_pred CcccccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEE
Q 037851 151 GYEAFESRMSTLKSLQNALLDPDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVV 208 (1053)
Q Consensus 151 ~~~~~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~ 208 (1053)
+...+.+|......++.++.+. .+|.+.|.+|.|||+||.+++.+.-..+.|+.++
T Consensus 53 ~~~~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIi 108 (262)
T PRK10536 53 DTSPILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEALIHKDVDRII 108 (262)
T ss_pred CCccccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEE
Confidence 3445677888888888888654 5999999999999999999988643234455443
No 178
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.27 E-value=0.0038 Score=68.71 Aligned_cols=129 Identities=17% Similarity=0.235 Sum_probs=79.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhcC
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLGMQFDEESDVPGRARKLYARLQKE 253 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 253 (1053)
-..+.|+|..|.|||-|++++.+.......-..+++++. .....+++..+.. .....+++..
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~s------e~f~~~~v~a~~~---------~~~~~Fk~~y--- 174 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTS------EDFTNDFVKALRD---------NEMEKFKEKY--- 174 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccH------HHHHHHHHHHHHh---------hhHHHHHHhh---
Confidence 578999999999999999999999874322233444432 2333344433321 1233444443
Q ss_pred CcEEEEEcCCCCcc---chh-h---hcCCCCCCCCCcEEEEEecCh---------HHHHhhC-CCcccccCCCHHHHHHH
Q 037851 254 NKILIILDNIWEDL---DLE-K---VGVPSGNDCRGCKVLLTARDR---------HVLESIG-SKTLRIDVLNDEEAWTL 316 (1053)
Q Consensus 254 ~~~LlvlDdv~~~~---~~~-~---l~~~~~~~~~gs~iivTtR~~---------~v~~~~~-~~~~~l~~L~~~~~~~l 316 (1053)
.-=++++||++... .|+ + +...+.. .|-.||+|++.. .+...+. .-++++.+.+.+....+
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~--~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~ai 252 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLE--NGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAI 252 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHh--cCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHH
Confidence 22388899996532 221 1 2222222 233899988643 2333444 67899999999999999
Q ss_pred HHHHhC
Q 037851 317 FKKMTG 322 (1053)
Q Consensus 317 f~~~~~ 322 (1053)
+.+.+.
T Consensus 253 L~kka~ 258 (408)
T COG0593 253 LRKKAE 258 (408)
T ss_pred HHHHHH
Confidence 998774
No 179
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.23 E-value=0.031 Score=56.82 Aligned_cols=54 Identities=17% Similarity=0.172 Sum_probs=41.6
Q ss_pred CCCcccccchHHHHHHHHH----HhcCCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcC
Q 037851 149 GKGYEAFESRMSTLKSLQN----ALLDPDVTITGVYGMGGLGKTTLVKEVARQVKKDK 202 (1053)
Q Consensus 149 ~~~~~~~~gR~~~~~~l~~----~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~ 202 (1053)
......++|-+.+++.|++ .+......-+.+||..|.|||++++++.+....++
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~G 80 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQG 80 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC
Confidence 4456678898888888764 33334456778899999999999999999887543
No 180
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.22 E-value=0.0027 Score=68.88 Aligned_cols=103 Identities=12% Similarity=0.138 Sum_probs=68.4
Q ss_pred HHHHHHhc-CCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCe-EEEEEEcCC-cCHHHHHHHHHHHhCCCCCCCCCh
Q 037851 163 KSLQNALL-DPDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDE-VVFAEVSDT-PDIKKVQGELADQLGMQFDEESDV 239 (1053)
Q Consensus 163 ~~l~~~l~-~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~-~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~~ 239 (1053)
.++++.+. -++..-+.|+|..|+|||||++.+++....+ +-+. ++|+-+.+. .++.++.+.+...+.....+....
T Consensus 121 ~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~-~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~ 199 (380)
T PRK12608 121 MRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAAN-HPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPD 199 (380)
T ss_pred HhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHhc-CCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHH
Confidence 45677765 2334567999999999999999999987642 3344 467777655 468888888888776654333222
Q ss_pred h-----HHHHHHHHHH-hcCCcEEEEEcCCCCc
Q 037851 240 P-----GRARKLYARL-QKENKILIILDNIWED 266 (1053)
Q Consensus 240 ~-----~~~~~l~~~l-~~~~~~LlvlDdv~~~ 266 (1053)
. ..+..+.+++ .++++++||+|++...
T Consensus 200 ~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr~ 232 (380)
T PRK12608 200 EHIRVAELVLERAKRLVEQGKDVVILLDSLTRL 232 (380)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHHH
Confidence 1 1122233333 2589999999999543
No 181
>PHA00729 NTP-binding motif containing protein
Probab=97.21 E-value=0.0028 Score=63.99 Aligned_cols=36 Identities=31% Similarity=0.382 Sum_probs=28.9
Q ss_pred HHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 164 SLQNALLDPDVTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 164 ~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
.+++.+...+...|.|.|.+|+||||||..+++...
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 344555556667899999999999999999998753
No 182
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.21 E-value=0.0041 Score=71.40 Aligned_cols=173 Identities=16% Similarity=0.119 Sum_probs=93.8
Q ss_pred cccccchHHHHHHHHHHh---c-------CCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHH
Q 037851 152 YEAFESRMSTLKSLQNAL---L-------DPDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKV 221 (1053)
Q Consensus 152 ~~~~~gR~~~~~~l~~~l---~-------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~ 221 (1053)
...+.|.+..++.+.+.. . -...+-|.++|++|+|||.+|+.+++.... .| +-++.+. +
T Consensus 227 ~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~--~~---~~l~~~~------l 295 (489)
T CHL00195 227 ISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQL--PL---LRLDVGK------L 295 (489)
T ss_pred HHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCC--CE---EEEEhHH------h
Confidence 445667666555554321 1 023467899999999999999999998652 11 2222211 1
Q ss_pred HHHHHHHhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCccc--------------hhhhcCCCCCCCCCcEEEE
Q 037851 222 QGELADQLGMQFDEESDVPGRARKLYARLQKENKILIILDNIWEDLD--------------LEKVGVPSGNDCRGCKVLL 287 (1053)
Q Consensus 222 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~--------------~~~l~~~~~~~~~gs~iiv 287 (1053)
.. . . ....+.....+.+......+++|++|+++.... ...+...+.....+.-||.
T Consensus 296 ~~----~----~--vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIa 365 (489)
T CHL00195 296 FG----G----I--VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVA 365 (489)
T ss_pred cc----c----c--cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEE
Confidence 10 0 0 001112334444444456889999999964310 0111111112223445666
Q ss_pred EecChHHHH----hhC--CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCc
Q 037851 288 TARDRHVLE----SIG--SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLP 345 (1053)
Q Consensus 288 TtR~~~v~~----~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlP 345 (1053)
||.+.+-.. ..| +..+.+..-+.++-.++|+.+.........-......+++.+.|.-
T Consensus 366 TTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfS 429 (489)
T CHL00195 366 TANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFS 429 (489)
T ss_pred ecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCC
Confidence 776554222 122 5678888889999999998887532211100112456777777654
No 183
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.21 E-value=0.0072 Score=70.84 Aligned_cols=200 Identities=19% Similarity=0.228 Sum_probs=107.4
Q ss_pred CCCcccccchHHHHHHHHHHh---cC---------CCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCc
Q 037851 149 GKGYEAFESRMSTLKSLQNAL---LD---------PDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTP 216 (1053)
Q Consensus 149 ~~~~~~~~gR~~~~~~l~~~l---~~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 216 (1053)
.....++.|-+..++++.+++ .. ...+-+.++|++|+|||++|+.+++.... . |+.++.
T Consensus 51 ~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~--~-----~~~i~~-- 121 (495)
T TIGR01241 51 KVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGV--P-----FFSISG-- 121 (495)
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCC--C-----eeeccH--
Confidence 344556778776665554433 21 12346889999999999999999987542 1 222221
Q ss_pred CHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCcc------------ch----hhhcCCCC--C
Q 037851 217 DIKKVQGELADQLGMQFDEESDVPGRARKLYARLQKENKILIILDNIWEDL------------DL----EKVGVPSG--N 278 (1053)
Q Consensus 217 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~------------~~----~~l~~~~~--~ 278 (1053)
.++.... .+. .......+.+......+.+|++||++... .+ ..+...+. .
T Consensus 122 --~~~~~~~---~g~-------~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~ 189 (495)
T TIGR01241 122 --SDFVEMF---VGV-------GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG 189 (495)
T ss_pred --HHHHHHH---hcc-------cHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhcccc
Confidence 1111110 010 11233444444444677899999996431 01 11211111 1
Q ss_pred CCCCcEEEEEecChHHHHh----hC--CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCc-hHHHHH
Q 037851 279 DCRGCKVLLTARDRHVLES----IG--SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLP-IAIVTL 351 (1053)
Q Consensus 279 ~~~gs~iivTtR~~~v~~~----~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlP-lai~~~ 351 (1053)
...+..||.||...+..+. -+ ...+.+...+.++-.++|+.+........ ......+++.+.|.- -.|..+
T Consensus 190 ~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~--~~~l~~la~~t~G~sgadl~~l 267 (495)
T TIGR01241 190 TNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAP--DVDLKAVARRTPGFSGADLANL 267 (495)
T ss_pred CCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCc--chhHHHHHHhCCCCCHHHHHHH
Confidence 2234567777766542221 12 56788999999999999988875322211 122457888888754 333333
Q ss_pred HH---HH--h-cC--CCHHHHHHHHHHh
Q 037851 352 AK---AL--R-NK--TSVSTWKDALRQL 371 (1053)
Q Consensus 352 ~~---~L--~-~~--~~~~~w~~~l~~l 371 (1053)
.. .. + ++ -+.+..+.+++..
T Consensus 268 ~~eA~~~a~~~~~~~i~~~~l~~a~~~~ 295 (495)
T TIGR01241 268 LNEAALLAARKNKTEITMNDIEEAIDRV 295 (495)
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 22 11 1 11 2456666666554
No 184
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.0055 Score=67.42 Aligned_cols=147 Identities=20% Similarity=0.258 Sum_probs=88.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhc
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLGMQFDEESDVPGRARKLYARLQK 252 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 252 (1053)
....+.+.|++|+|||+||..++... .|..+--++..+.....+- .............. +
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~S----~FPFvKiiSpe~miG~sEs---------------aKc~~i~k~F~DAY-k 596 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALSS----DFPFVKIISPEDMIGLSES---------------AKCAHIKKIFEDAY-K 596 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhhc----CCCeEEEeChHHccCccHH---------------HHHHHHHHHHHHhh-c
Confidence 35667889999999999999998764 3654432222111111000 00001111122222 3
Q ss_pred CCcEEEEEcCCCCccchhhhcCCCC---------------CCCCCcEEEEEecChHHHHhhC-----CCcccccCCCH-H
Q 037851 253 ENKILIILDNIWEDLDLEKVGVPSG---------------NDCRGCKVLLTARDRHVLESIG-----SKTLRIDVLND-E 311 (1053)
Q Consensus 253 ~~~~LlvlDdv~~~~~~~~l~~~~~---------------~~~~gs~iivTtR~~~v~~~~~-----~~~~~l~~L~~-~ 311 (1053)
..--.||+||+....+|-.+++.|. ..++.--|+-||-...+...|+ ...|.+..++. +
T Consensus 597 S~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~ 676 (744)
T KOG0741|consen 597 SPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGE 676 (744)
T ss_pred CcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchH
Confidence 6678999999988888766655442 2233344667888888888876 56788988887 7
Q ss_pred HHHHHHHHHhCCCCCCccchHHHHHHHHHh
Q 037851 312 EAWTLFKKMTGDCAEKGELKSIATDVAKEC 341 (1053)
Q Consensus 312 ~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~ 341 (1053)
+..+.++..- ...+.+.+.++++...+|
T Consensus 677 ~~~~vl~~~n--~fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 677 QLLEVLEELN--IFSDDEVRAIAEQLLSKK 704 (744)
T ss_pred HHHHHHHHcc--CCCcchhHHHHHHHhccc
Confidence 7777776543 122334455566666655
No 185
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.16 E-value=0.018 Score=71.25 Aligned_cols=46 Identities=22% Similarity=0.231 Sum_probs=37.6
Q ss_pred cccchHHHHHHHHHHhc------CCCeeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 154 AFESRMSTLKSLQNALL------DPDVTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 154 ~~~gR~~~~~~l~~~l~------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
.++|.++.++++.+++. ..+.+++.++|++|+|||++|+.+++...
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~ 372 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALN 372 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 46788888888887664 22446899999999999999999999875
No 186
>PRK08116 hypothetical protein; Validated
Probab=97.15 E-value=0.0015 Score=69.29 Aligned_cols=102 Identities=18% Similarity=0.190 Sum_probs=59.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhcCC
Q 037851 175 TITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLGMQFDEESDVPGRARKLYARLQKEN 254 (1053)
Q Consensus 175 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 254 (1053)
..+.++|..|+|||.||.++++....+ -..++|++ ..+++..+........ . .....+.+.+. +-
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~--~~~v~~~~------~~~ll~~i~~~~~~~~--~----~~~~~~~~~l~-~~ 179 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK--GVPVIFVN------FPQLLNRIKSTYKSSG--K----EDENEIIRSLV-NA 179 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEE------HHHHHHHHHHHHhccc--c----ccHHHHHHHhc-CC
Confidence 458899999999999999999998743 34456665 3345555554443211 0 11223445553 23
Q ss_pred cEEEEEcCCCC--ccchhh--hcCCCCC-CCCCcEEEEEecCh
Q 037851 255 KILIILDNIWE--DLDLEK--VGVPSGN-DCRGCKVLLTARDR 292 (1053)
Q Consensus 255 ~~LlvlDdv~~--~~~~~~--l~~~~~~-~~~gs~iivTtR~~ 292 (1053)
=||||||+.. ..+|.. +...+.. ...|..+|+||...
T Consensus 180 -dlLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 180 -DLLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred -CEEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 3899999943 334422 2111110 12456689998743
No 187
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.14 E-value=0.0089 Score=64.60 Aligned_cols=171 Identities=14% Similarity=0.104 Sum_probs=95.1
Q ss_pred HHHHHHHHhcCCCe-eEEEEEcCCCCcHHHHHHHHHHHhhhcCCCC----------------eEEEEEEcCCcCHHHHHH
Q 037851 161 TLKSLQNALLDPDV-TITGVYGMGGLGKTTLVKEVARQVKKDKHFD----------------EVVFAEVSDTPDIKKVQG 223 (1053)
Q Consensus 161 ~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~----------------~~~wv~~s~~~~~~~~~~ 223 (1053)
..+.+...+..+++ ..+.++|+.|+||+++|..+++..--.+... -..|+.......
T Consensus 12 ~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~------ 85 (319)
T PRK08769 12 AYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRT------ 85 (319)
T ss_pred HHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcc------
Confidence 45666677666554 4688999999999999999988753211110 011221000000
Q ss_pred HHHHHhCCCCCCCCChhHHHHHHHHHHh----cCCcEEEEEcCCCCcc--chhhhcCCCCCCCCCcEEEEEecCh-HHHH
Q 037851 224 ELADQLGMQFDEESDVPGRARKLYARLQ----KENKILIILDNIWEDL--DLEKVGVPSGNDCRGCKVLLTARDR-HVLE 296 (1053)
Q Consensus 224 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~iivTtR~~-~v~~ 296 (1053)
+... ...-..+.+..+.+.+. .+++-++|+|+++... .-.++...+-.-..++.+|++|.+. .+..
T Consensus 86 ------~~k~-~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLp 158 (319)
T PRK08769 86 ------GDKL-RTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPA 158 (319)
T ss_pred ------cccc-cccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCch
Confidence 0000 00000122333333332 3566789999997652 2233322222222456666666644 4443
Q ss_pred hhC--CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCchHHHHH
Q 037851 297 SIG--SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPIAIVTL 351 (1053)
Q Consensus 297 ~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~ 351 (1053)
.+. ...+.+.+++.+++...+.+.. .+ +..+..++..++|.|+.+..+
T Consensus 159 TIrSRCq~i~~~~~~~~~~~~~L~~~~---~~----~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 159 TIRSRCQRLEFKLPPAHEALAWLLAQG---VS----ERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred HHHhhheEeeCCCcCHHHHHHHHHHcC---CC----hHHHHHHHHHcCCCHHHHHHH
Confidence 333 5678899999999998887531 11 223667899999999876543
No 188
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.13 E-value=0.00023 Score=85.02 Aligned_cols=81 Identities=25% Similarity=0.429 Sum_probs=40.5
Q ss_pred cCccCcEEEcCCcccCC---ccccCCCCCCcEEEccCCCCcccchhhhccCCCCeeeccCcccccc-cCcchhcCCccCc
Q 037851 549 LLTDLRTLCLDGCELED---IRVIGELKDLEILSLQGSKIEQLPREIGQLTQLKLLDLSNCSKLKV-IAPNVLSNLSQLE 624 (1053)
Q Consensus 549 ~l~~Lr~L~L~~~~~~~---~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~-~~~~~l~~l~~L~ 624 (1053)
.|+.|+.|.+.+-.+.. .....+++||..||+|+|+++.+ .++++|++|++|.+.+-. +.. ..-..+.+|++|+
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe-~e~~~~l~~LF~L~~L~ 223 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLE-FESYQDLIDLFNLKKLR 223 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCC-CCchhhHHHHhcccCCC
Confidence 34556666655554433 13344556666666666665555 455666666666554421 111 0011244556666
Q ss_pred eeecccc
Q 037851 625 ELYMANC 631 (1053)
Q Consensus 625 ~L~l~~~ 631 (1053)
+||++..
T Consensus 224 vLDIS~~ 230 (699)
T KOG3665|consen 224 VLDISRD 230 (699)
T ss_pred eeecccc
Confidence 6665544
No 189
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.11 E-value=0.031 Score=61.44 Aligned_cols=194 Identities=18% Similarity=0.203 Sum_probs=124.1
Q ss_pred hHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHH-HHHHHHhhhcCCCCeEEEEEEcCC---cCHHHHHHHHHHHhCCCC
Q 037851 158 RMSTLKSLQNALLDPDVTITGVYGMGGLGKTTLV-KEVARQVKKDKHFDEVVFAEVSDT---PDIKKVQGELADQLGMQF 233 (1053)
Q Consensus 158 R~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~f~~~~wv~~s~~---~~~~~~~~~i~~~l~~~~ 233 (1053)
|.+..++|..||.+..-.+|.|.|+-|.||+.|+ .++.++.+ .+..+++.+- .+-..+++.++.++|.-+
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r~------~vL~IDC~~i~~ar~D~~~I~~lA~qvGY~P 74 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDRK------NVLVIDCDQIVKARGDAAFIKNLASQVGYFP 74 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCCC------CEEEEEChHhhhccChHHHHHHHHHhcCCCc
Confidence 5678899999999777789999999999999999 77766533 2677776532 234455556665554321
Q ss_pred -----------------------CC-CCChhHHHHHHHHH----Hh-------------------------cCCcEEEEE
Q 037851 234 -----------------------DE-ESDVPGRARKLYAR----LQ-------------------------KENKILIIL 260 (1053)
Q Consensus 234 -----------------------~~-~~~~~~~~~~l~~~----l~-------------------------~~~~~Llvl 260 (1053)
.+ ....+.....+++. |+ ..++-+||+
T Consensus 75 vFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVVI 154 (431)
T PF10443_consen 75 VFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVVI 154 (431)
T ss_pred chHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEEE
Confidence 01 11122222222111 10 123679999
Q ss_pred cCCCCc-----------cchhhhcCCCCCCCCCcEEEEEecChHHHHh----hC---CCcccccCCCHHHHHHHHHHHhC
Q 037851 261 DNIWED-----------LDLEKVGVPSGNDCRGCKVLLTARDRHVLES----IG---SKTLRIDVLNDEEAWTLFKKMTG 322 (1053)
Q Consensus 261 Ddv~~~-----------~~~~~l~~~~~~~~~gs~iivTtR~~~v~~~----~~---~~~~~l~~L~~~~~~~lf~~~~~ 322 (1053)
|+.... .+|...... .+=..||++|-+....+. +. ...+.+...+++.|.++...+..
T Consensus 155 dnF~~k~~~~~~iy~~laeWAa~Lv~----~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~ 230 (431)
T PF10443_consen 155 DNFLHKAEENDFIYDKLAEWAASLVQ----NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLD 230 (431)
T ss_pred cchhccCcccchHHHHHHHHHHHHHh----cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhc
Confidence 998533 234432221 234579999987765553 33 46789999999999999998875
Q ss_pred CCCCC-------------------ccchHHHHHHHHHhCCCchHHHHHHHHHhcCCCH
Q 037851 323 DCAEK-------------------GELKSIATDVAKECGGLPIAIVTLAKALRNKTSV 361 (1053)
Q Consensus 323 ~~~~~-------------------~~~~~~~~~i~~~~~GlPlai~~~~~~L~~~~~~ 361 (1053)
..... .....-....++..||=-.-+..+++.++...++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p 288 (431)
T PF10443_consen 231 EDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESP 288 (431)
T ss_pred ccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCH
Confidence 32110 1233346677888999999999999999877544
No 190
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.11 E-value=2.8e-05 Score=87.72 Aligned_cols=105 Identities=25% Similarity=0.322 Sum_probs=77.6
Q ss_pred ccCCCceeEEeecCccccCCCcccccCccCcEEEcCCcccCCccccCC-CCCCcEEEccCCCCcccchhhhccCCCCeee
Q 037851 524 FIGTPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDGCELEDIRVIGE-LKDLEILSLQGSKIEQLPREIGQLTQLKLLD 602 (1053)
Q Consensus 524 ~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~~~~i~~-l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~ 602 (1053)
+.-++.|+.|+|++|.+.... .+..|.+|+.|||++|.+..++.++. =.+|+.|.+++|.+++|- +|.+|++|+.||
T Consensus 183 Lqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL~-gie~LksL~~LD 260 (1096)
T KOG1859|consen 183 LQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTLR-GIENLKSLYGLD 260 (1096)
T ss_pred HHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeecccHHHhhh-hHHhhhhhhccc
Confidence 445678888888888887765 57888888888888888877544432 134888888888888776 688888888888
Q ss_pred ccCccccc---ccCcchhcCCccCceeecccccc
Q 037851 603 LSNCSKLK---VIAPNVLSNLSQLEELYMANCSI 633 (1053)
Q Consensus 603 l~~~~~l~---~~~~~~l~~l~~L~~L~l~~~~~ 633 (1053)
++.| -+. .+.| ++.|..|..|.+.+|.+
T Consensus 261 lsyN-ll~~hseL~p--LwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 261 LSYN-LLSEHSELEP--LWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hhHh-hhhcchhhhH--HHHHHHHHHHhhcCCcc
Confidence 8873 332 2322 56778888888888865
No 191
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.11 E-value=0.008 Score=66.12 Aligned_cols=143 Identities=16% Similarity=0.157 Sum_probs=84.5
Q ss_pred ccc-hHHHHHHHHHHhcCCCe-eEEEEEcCCCCcHHHHHHHHHHHhhhcC--------------------CCCeEEEEEE
Q 037851 155 FES-RMSTLKSLQNALLDPDV-TITGVYGMGGLGKTTLVKEVARQVKKDK--------------------HFDEVVFAEV 212 (1053)
Q Consensus 155 ~~g-R~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~--------------------~f~~~~wv~~ 212 (1053)
++| .+..++.+.+.+..+++ ....++|+.|+||||+|+.+++..--.. |.|.. ++..
T Consensus 7 i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~-~i~~ 85 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVH-LVAP 85 (329)
T ss_pred HHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEE-Eecc
Confidence 455 66677777777776654 4568999999999999999988753211 11211 1111
Q ss_pred c-CCcCHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHh----cCCcEEEEEcCCCCcc--chhhhcCCCCCCCCCcEE
Q 037851 213 S-DTPDIKKVQGELADQLGMQFDEESDVPGRARKLYARLQ----KENKILIILDNIWEDL--DLEKVGVPSGNDCRGCKV 285 (1053)
Q Consensus 213 s-~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~i 285 (1053)
. ....+ +.+..+.+.+. .+++=++|+|+++... ....+...+-....++.+
T Consensus 86 ~~~~i~i----------------------d~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~ 143 (329)
T PRK08058 86 DGQSIKK----------------------DQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTA 143 (329)
T ss_pred ccccCCH----------------------HHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceE
Confidence 1 11111 12222333221 2455678999987552 233444333333346677
Q ss_pred EEEecChH-HHHhhC--CCcccccCCCHHHHHHHHHHH
Q 037851 286 LLTARDRH-VLESIG--SKTLRIDVLNDEEAWTLFKKM 320 (1053)
Q Consensus 286 ivTtR~~~-v~~~~~--~~~~~l~~L~~~~~~~lf~~~ 320 (1053)
|++|.+.. +..... ...+++.+++.++..+.+.+.
T Consensus 144 Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 144 ILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred EEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 77776543 333332 678899999999998888653
No 192
>PRK08118 topology modulation protein; Reviewed
Probab=97.10 E-value=0.00028 Score=69.05 Aligned_cols=35 Identities=26% Similarity=0.528 Sum_probs=28.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhc-CCCCeEEE
Q 037851 175 TITGVYGMGGLGKTTLVKEVARQVKKD-KHFDEVVF 209 (1053)
Q Consensus 175 ~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~w 209 (1053)
+.|.|+|++|+||||||+.+++..... -+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 358999999999999999999987643 45666665
No 193
>PRK12377 putative replication protein; Provisional
Probab=97.08 E-value=0.0017 Score=67.38 Aligned_cols=75 Identities=21% Similarity=0.225 Sum_probs=48.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhc
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLGMQFDEESDVPGRARKLYARLQK 252 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 252 (1053)
+...+.++|..|+|||.||.++++....+ ...++|+++. ++...+-...... .....+.+.+
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~~~--g~~v~~i~~~------~l~~~l~~~~~~~--------~~~~~~l~~l-- 161 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLLAK--GRSVIVVTVP------DVMSRLHESYDNG--------QSGEKFLQEL-- 161 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEEEHH------HHHHHHHHHHhcc--------chHHHHHHHh--
Confidence 34678999999999999999999998743 2335666554 3444444433210 1112344555
Q ss_pred CCcEEEEEcCCCC
Q 037851 253 ENKILIILDNIWE 265 (1053)
Q Consensus 253 ~~~~LlvlDdv~~ 265 (1053)
.+-=||||||+..
T Consensus 162 ~~~dLLiIDDlg~ 174 (248)
T PRK12377 162 CKVDLLVLDEIGI 174 (248)
T ss_pred cCCCEEEEcCCCC
Confidence 4677999999943
No 194
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.06 E-value=0.0067 Score=74.17 Aligned_cols=156 Identities=15% Similarity=0.172 Sum_probs=86.0
Q ss_pred ccccchHHHHHHHHHHhc------CCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHH
Q 037851 153 EAFESRMSTLKSLQNALL------DPDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELA 226 (1053)
Q Consensus 153 ~~~~gR~~~~~~l~~~l~------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 226 (1053)
..++|.++.+++|++++. .....++.++|++|+||||+|+.++.... ..| +.++.+...+..++...-.
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~--~~~---~~i~~~~~~d~~~i~g~~~ 396 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATG--RKY---VRMALGGVRDEAEIRGHRR 396 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhC--CCE---EEEEcCCCCCHHHhccchh
Confidence 457899999999998876 23457899999999999999999998764 222 2244444444433321111
Q ss_pred HHhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCccc------hhhhcCCCCC---------------CCCCcEE
Q 037851 227 DQLGMQFDEESDVPGRARKLYARLQKENKILIILDNIWEDLD------LEKVGVPSGN---------------DCRGCKV 285 (1053)
Q Consensus 227 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~------~~~l~~~~~~---------------~~~gs~i 285 (1053)
...+. ........+. .. ....-+++||+++.... ...+...+.. .-.+.-+
T Consensus 397 ~~~g~------~~G~~~~~l~-~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~ 468 (784)
T PRK10787 397 TYIGS------MPGKLIQKMA-KV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMF 468 (784)
T ss_pred ccCCC------CCcHHHHHHH-hc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEE
Confidence 11110 0101112221 11 12345788999964421 1222211111 1123345
Q ss_pred EEEecChHHHHh-hC-CCcccccCCCHHHHHHHHHHHh
Q 037851 286 LLTARDRHVLES-IG-SKTLRIDVLNDEEAWTLFKKMT 321 (1053)
Q Consensus 286 ivTtR~~~v~~~-~~-~~~~~l~~L~~~~~~~lf~~~~ 321 (1053)
|.|+.+..+... .. ...+++.+++.+|-.++.+++.
T Consensus 469 i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 469 VATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 556654432221 11 4578899999888888887665
No 195
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.06 E-value=9.7e-05 Score=76.82 Aligned_cols=39 Identities=36% Similarity=0.544 Sum_probs=21.2
Q ss_pred CCCceeEEeecCcccc-C----CCcccccCccCcEEEcCCcccC
Q 037851 526 GTPKLKVLDFTRMRLL-S----LPSSIHLLTDLRTLCLDGCELE 564 (1053)
Q Consensus 526 ~~~~Lr~L~l~~~~~~-~----lp~~i~~l~~Lr~L~L~~~~~~ 564 (1053)
++++|++|+||+|.+. . +-+-+.++..|+.|.|.+|.+.
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg 133 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLG 133 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCC
Confidence 4556666666666554 1 1223445556666666666543
No 196
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.03 E-value=0.008 Score=60.10 Aligned_cols=170 Identities=17% Similarity=0.246 Sum_probs=103.1
Q ss_pred cccccchHHHHH---HHHHHhcCC------CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHH
Q 037851 152 YEAFESRMSTLK---SLQNALLDP------DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQ 222 (1053)
Q Consensus 152 ~~~~~gR~~~~~---~l~~~l~~~------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 222 (1053)
.++++|.++.+. -|++.|.++ .++-|..+|++|.|||-+|+++++..++- | +.+. ..+
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp--~-----l~vk----at~-- 186 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVP--L-----LLVK----ATE-- 186 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCc--e-----EEec----hHH--
Confidence 456788776554 355667643 46889999999999999999999987631 1 2221 111
Q ss_pred HHHHHHhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCc--------------cchhhhcCCCCC--CCCCcEEE
Q 037851 223 GELADQLGMQFDEESDVPGRARKLYARLQKENKILIILDNIWED--------------LDLEKVGVPSGN--DCRGCKVL 286 (1053)
Q Consensus 223 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~--------------~~~~~l~~~~~~--~~~gs~ii 286 (1053)
-|-+..| +....+.++.++-.+.-++++++|.++.. +...++...+.. .+.|...|
T Consensus 187 -liGehVG-------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtI 258 (368)
T COG1223 187 -LIGEHVG-------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTI 258 (368)
T ss_pred -HHHHHhh-------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEE
Confidence 2222222 22245667777776788999999998643 112333333322 34566667
Q ss_pred EEecChHHHHh-hC---CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCC
Q 037851 287 LTARDRHVLES-IG---SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGL 344 (1053)
Q Consensus 287 vTtR~~~v~~~-~~---~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~Gl 344 (1053)
-.|...+..+. .. ...|+..--+++|-.+++...+..-.-+- ..-.+.++++.+|+
T Consensus 259 aaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv--~~~~~~~~~~t~g~ 318 (368)
T COG1223 259 AATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPV--DADLRYLAAKTKGM 318 (368)
T ss_pred eecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCcc--ccCHHHHHHHhCCC
Confidence 77776665553 22 45677777788899999988874211111 11155566666664
No 197
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.02 E-value=0.0015 Score=64.02 Aligned_cols=101 Identities=21% Similarity=0.170 Sum_probs=67.6
Q ss_pred CcccccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhC
Q 037851 151 GYEAFESRMSTLKSLQNALLDPDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLG 230 (1053)
Q Consensus 151 ~~~~~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 230 (1053)
...++||-++.++++.-...+++.+-+.|.||+|+||||-+..+++..--...-+++.-.++|....+.-+-..|-.-..
T Consensus 25 ~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvVRn~IK~FAQ 104 (333)
T KOG0991|consen 25 VLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVRNKIKMFAQ 104 (333)
T ss_pred HHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHHHHHHHHHHHH
Confidence 34578899999988877777888999999999999999999999988763333355555666665554433332211100
Q ss_pred CCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCc
Q 037851 231 MQFDEESDVPGRARKLYARLQKENKILIILDNIWED 266 (1053)
Q Consensus 231 ~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~ 266 (1053)
.. -.+-.++.-.||||..++.
T Consensus 105 ~k---------------v~lp~grhKIiILDEADSM 125 (333)
T KOG0991|consen 105 KK---------------VTLPPGRHKIIILDEADSM 125 (333)
T ss_pred hh---------------ccCCCCceeEEEeeccchh
Confidence 00 0011356678899999875
No 198
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.01 E-value=5.8e-05 Score=89.36 Aligned_cols=248 Identities=20% Similarity=0.202 Sum_probs=133.4
Q ss_pred ccccccEEEeecCCCceeecCCcccccCcCCccceeecccc-cccccccc-cccCccccCCccEEeEccCCCccccCCch
Q 037851 744 GFAELKHLNVKNNSNFLCIVDPLQVRCGAFPMLESLVLQNL-INLERICH-GQLRAESFCNLKTIKVGSCHKLKNLFSFS 821 (1053)
Q Consensus 744 ~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~p~L~~L~l~~~-~~L~~~~~-~~~~~~~~~~L~~L~i~~c~~l~~l~~~~ 821 (1053)
.+++|+.|.+.+|..+.... ........|.|+.|.+.++ ........ .......+++|+.|++..|..+++..-..
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~ 263 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDS--LDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSA 263 (482)
T ss_pred hCchhhHhhhcccccCChhh--HHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHH
Confidence 47899999999887544311 1122456788999999873 22221110 01122346889999999987666542222
Q ss_pred hhhccCCccEEEecccchhhhHhhcCcccccccccccccceEecCCCcccccccccccccccccchhhhhHhhhccccCC
Q 037851 822 IAKFLPQLKTIEVTECKIVEEIFVSSNEEAIGEIALAQVRSLILRTLPLLASFSAFVKTTSTVEAKHNEIILENESQLHT 901 (1053)
Q Consensus 822 ~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~si~~~~~~~~~l~~~~~~~~~~~~~~~~~ 901 (1053)
....+++|++|.+.+|..+........ ...+++|++|+|.+|..+..-.. ...
T Consensus 264 l~~~c~~L~~L~l~~c~~lt~~gl~~i-----~~~~~~L~~L~l~~c~~~~d~~l-------------~~~--------- 316 (482)
T KOG1947|consen 264 LASRCPNLETLSLSNCSNLTDEGLVSI-----AERCPSLRELDLSGCHGLTDSGL-------------EAL--------- 316 (482)
T ss_pred HHhhCCCcceEccCCCCccchhHHHHH-----HHhcCcccEEeeecCccchHHHH-------------HHH---------
Confidence 334588999999888876432221111 12477899999998877632100 000
Q ss_pred CCccccccccccccceEeecccc----cceeccCCccccccccC-CcccEEEEecCccccccccchhHhhhccCc-EEEE
Q 037851 902 PSSLFNVKLVLPNLEVLEVRDLN----VAKIWHNQFSAAMSCNV-QNLTRLVVLDCHKLRYVFSYSTAKRLGQLK-HLVI 975 (1053)
Q Consensus 902 ~~~~~~~~~~~~~L~~L~l~~~~----~~~~~~~~~~~~~~~~l-~~L~~L~i~~c~~l~~l~~~~~l~~l~sL~-~L~i 975 (1053)
...+++|+.|.+..+. ++...-... .... ..+..+.+..|++++++... ... ..... .+.+
T Consensus 317 -------~~~c~~l~~l~~~~~~~c~~l~~~~l~~~----~~~~~d~~~~~~~~~~~~l~~~~l~-~~~-~~~~~~~~~l 383 (482)
T KOG1947|consen 317 -------LKNCPNLRELKLLSLNGCPSLTDLSLSGL----LTLTSDDLAELILRSCPKLTDLSLS-YCG-ISDLGLELSL 383 (482)
T ss_pred -------HHhCcchhhhhhhhcCCCccHHHHHHHHh----hccCchhHhHHHHhcCCCcchhhhh-hhh-ccCcchHHHh
Confidence 1115555555544432 211100000 0011 25666667777776665332 222 33333 4677
Q ss_pred ecccccc-eeecccCccccCCcccccccCccccccccccccccCCCCccCCCCcceEEEecCCCCcc
Q 037851 976 SRCPLLE-EIVGKEGGVEADPSFVFPQLTILKLSSLPELRAFYPGIHTLECPILTKLEVSFCHKLES 1041 (1053)
Q Consensus 976 ~~c~~l~-~i~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~l~~~~~~~~~~sL~~L~I~~Cp~L~~ 1041 (1053)
.+|+.++ ++... ...+++++.|.+..|...+.-........+..++.+++.+|+.+..
T Consensus 384 ~gc~~l~~~l~~~--------~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~ 442 (482)
T KOG1947|consen 384 RGCPNLTESLELR--------LCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITL 442 (482)
T ss_pred cCCcccchHHHHH--------hccCCccceEecccCccccccchHHHhhhhhccccCCccCcccccc
Confidence 7777762 22110 1123338888888888765432221111256788888888877653
No 199
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.015 Score=59.38 Aligned_cols=170 Identities=22% Similarity=0.255 Sum_probs=99.3
Q ss_pred ccccchHHHHHHHHHHhc----------CC--CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHH
Q 037851 153 EAFESRMSTLKSLQNALL----------DP--DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKK 220 (1053)
Q Consensus 153 ~~~~gR~~~~~~l~~~l~----------~~--~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~ 220 (1053)
..+.|-+..++.|.+... .. ..+-|.++|++|.||+.||++|+.... . -|++||...
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn--S-----TFFSvSSSD---- 201 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN--S-----TFFSVSSSD---- 201 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC--C-----ceEEeehHH----
Confidence 345566666666665542 11 257899999999999999999998754 2 245666532
Q ss_pred HHHHHHHHhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCc---------cchhhhcC-------CCCCCCCCcE
Q 037851 221 VQGELADQLGMQFDEESDVPGRARKLYARLQKENKILIILDNIWED---------LDLEKVGV-------PSGNDCRGCK 284 (1053)
Q Consensus 221 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~---------~~~~~l~~-------~~~~~~~gs~ 284 (1053)
+.....+ ..+.++..+.+--+++++.+|++|.|+.. +.-..+.. -......|.-
T Consensus 202 ----LvSKWmG------ESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvL 271 (439)
T KOG0739|consen 202 ----LVSKWMG------ESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVL 271 (439)
T ss_pred ----HHHHHhc------cHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceE
Confidence 2222211 12255666666666789999999999643 11112221 1223345667
Q ss_pred EEEEecChHHHHhhC----CCcccccCCCHHHHH-HHHHHHhCCCCCCccchHHHHHHHHHhCCCc
Q 037851 285 VLLTARDRHVLESIG----SKTLRIDVLNDEEAW-TLFKKMTGDCAEKGELKSIATDVAKECGGLP 345 (1053)
Q Consensus 285 iivTtR~~~v~~~~~----~~~~~l~~L~~~~~~-~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlP 345 (1053)
|+-.|..+-+.+..- ...|-+ ||++..|. .+|+-+.++.. ..-.++-.+++.++..|.-
T Consensus 272 VLgATNiPw~LDsAIRRRFekRIYI-PLPe~~AR~~MF~lhlG~tp-~~LT~~d~~eL~~kTeGyS 335 (439)
T KOG0739|consen 272 VLGATNIPWVLDSAIRRRFEKRIYI-PLPEAHARARMFKLHLGDTP-HVLTEQDFKELARKTEGYS 335 (439)
T ss_pred EEecCCCchhHHHHHHHHhhcceec-cCCcHHHhhhhheeccCCCc-cccchhhHHHHHhhcCCCC
Confidence 777888776665421 222222 56666655 45666666432 2223444667777777653
No 200
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.99 E-value=0.0058 Score=75.61 Aligned_cols=106 Identities=15% Similarity=0.212 Sum_probs=60.6
Q ss_pred ccccchHHHHHHHHHHhc-------CC--CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHH
Q 037851 153 EAFESRMSTLKSLQNALL-------DP--DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQG 223 (1053)
Q Consensus 153 ~~~~gR~~~~~~l~~~l~-------~~--~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 223 (1053)
..++|.+..++.+.+.+. ++ ...++.++|+.|+|||.+|+.+++..-. .....+-++++...+. .
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~--~~~~~~~~dmse~~~~----~ 639 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYG--GEQNLITINMSEFQEA----H 639 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhC--CCcceEEEeHHHhhhh----h
Confidence 457898888888887764 12 2357899999999999999999887642 1222333343332111 1
Q ss_pred HHHHHhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCc
Q 037851 224 ELADQLGMQFDEESDVPGRARKLYARLQKENKILIILDNIWED 266 (1053)
Q Consensus 224 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~ 266 (1053)
.+.+-+|....... . .....+.+.+.+...-+|+||++...
T Consensus 640 ~~~~l~g~~~gyvg-~-~~~g~L~~~v~~~p~svvllDEieka 680 (852)
T TIGR03345 640 TVSRLKGSPPGYVG-Y-GEGGVLTEAVRRKPYSVVLLDEVEKA 680 (852)
T ss_pred hhccccCCCCCccc-c-cccchHHHHHHhCCCcEEEEechhhc
Confidence 11111222211111 0 11123444555556679999999754
No 201
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.94 E-value=0.026 Score=64.91 Aligned_cols=197 Identities=17% Similarity=0.159 Sum_probs=120.5
Q ss_pred ccccchHHHHHHHHHHhc----C-CCeeEEEEEcCCCCcHHHHHHHHHHHhhh---c---CCCCeEEEEEEcCCcCHHHH
Q 037851 153 EAFESRMSTLKSLQNALL----D-PDVTITGVYGMGGLGKTTLVKEVARQVKK---D---KHFDEVVFAEVSDTPDIKKV 221 (1053)
Q Consensus 153 ~~~~gR~~~~~~l~~~l~----~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~---~---~~f~~~~wv~~s~~~~~~~~ 221 (1053)
..+-+|+.+..+|-+.+. + +..+.+.|.|.+|.|||..+..|.+.... + ..|+ .+.|+.-.-....++
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~~ 474 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPREI 474 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHHH
Confidence 345689999988887765 3 34569999999999999999999996542 2 2343 345566666789999
Q ss_pred HHHHHHHhCCCCCCCCChhHHHHHHHHHHh----cCCcEEEEEcCCCCc-----cchhhhcCCCCCCCCCcEEEEEec-C
Q 037851 222 QGELADQLGMQFDEESDVPGRARKLYARLQ----KENKILIILDNIWED-----LDLEKVGVPSGNDCRGCKVLLTAR-D 291 (1053)
Q Consensus 222 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~-----~~~~~l~~~~~~~~~gs~iivTtR-~ 291 (1053)
+..|..++.+...... ..+..+..++. +.+..+|++|+++.. +.+..+..- ...++||++|-+= +
T Consensus 475 Y~~I~~~lsg~~~~~~---~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdW--pt~~~sKLvvi~IaN 549 (767)
T KOG1514|consen 475 YEKIWEALSGERVTWD---AALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDW--PTLKNSKLVVIAIAN 549 (767)
T ss_pred HHHHHHhcccCcccHH---HHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcC--CcCCCCceEEEEecc
Confidence 9999999876432211 22333444443 346688888987543 122222111 1235676554332 1
Q ss_pred h----------HHHHhhCCCcccccCCCHHHHHHHHHHHhCCC--CCCccchHHHHHHHHHhCCCchHHHHHHHHH
Q 037851 292 R----------HVLESIGSKTLRIDVLNDEEAWTLFKKMTGDC--AEKGELKSIATDVAKECGGLPIAIVTLAKAL 355 (1053)
Q Consensus 292 ~----------~v~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~--~~~~~~~~~~~~i~~~~~GlPlai~~~~~~L 355 (1053)
- .+...+|...+...|.+.++-.++...+..+. ....-.+=++++++.-.|..-.|+.+.-++.
T Consensus 550 TmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA~ 625 (767)
T KOG1514|consen 550 TMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRAA 625 (767)
T ss_pred cccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 1 23334556778888999988888887776432 2222334445556555555555555554443
No 202
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.93 E-value=0.0047 Score=75.87 Aligned_cols=103 Identities=18% Similarity=0.214 Sum_probs=60.0
Q ss_pred ccccchHHHHHHHHHHhcC-------C--CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHH
Q 037851 153 EAFESRMSTLKSLQNALLD-------P--DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQG 223 (1053)
Q Consensus 153 ~~~~gR~~~~~~l~~~l~~-------~--~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 223 (1053)
..++|.+..++.+.+.+.. + ...++.++|+.|+|||+||+.+++... ...+.++.++..+..
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~-----~~~~~~d~se~~~~~---- 524 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG-----VHLERFDMSEYMEKH---- 524 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc-----CCeEEEeCchhhhcc----
Confidence 3467777778877776651 1 134688999999999999999998763 234555555432211
Q ss_pred HHHHHhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCc
Q 037851 224 ELADQLGMQFDEESDVPGRARKLYARLQKENKILIILDNIWED 266 (1053)
Q Consensus 224 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~ 266 (1053)
.+.+.++...... .. +....+.+.+.....-+|+||+++..
T Consensus 525 ~~~~lig~~~gyv-g~-~~~~~l~~~~~~~p~~VvllDEieka 565 (731)
T TIGR02639 525 TVSRLIGAPPGYV-GF-EQGGLLTEAVRKHPHCVLLLDEIEKA 565 (731)
T ss_pred cHHHHhcCCCCCc-cc-chhhHHHHHHHhCCCeEEEEechhhc
Confidence 1122222221111 11 11233445554445569999999754
No 203
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.011 Score=66.32 Aligned_cols=182 Identities=16% Similarity=0.215 Sum_probs=103.7
Q ss_pred CcccccchHHHHHHHHHHhc---CC---------CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCH
Q 037851 151 GYEAFESRMSTLKSLQNALL---DP---------DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDI 218 (1053)
Q Consensus 151 ~~~~~~gR~~~~~~l~~~l~---~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 218 (1053)
....+-|-++.+.++.+++. .+ ..+=|.++|++|.|||.||+++++...+- |+.++..
T Consensus 188 ~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vP-------f~~isAp--- 257 (802)
T KOG0733|consen 188 SFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVP-------FLSISAP--- 257 (802)
T ss_pred chhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCc-------eEeecch---
Confidence 34566788888887776654 22 24678899999999999999999988742 3444332
Q ss_pred HHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCcc---ch----------hhh---cCCCCC---C
Q 037851 219 KKVQGELADQLGMQFDEESDVPGRARKLYARLQKENKILIILDNIWEDL---DL----------EKV---GVPSGN---D 279 (1053)
Q Consensus 219 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~---~~----------~~l---~~~~~~---~ 279 (1053)
+|.....+ ..++.+.++++.-...-++++++|+++... +| ..+ ...+.. .
T Consensus 258 -----eivSGvSG------ESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~ 326 (802)
T KOG0733|consen 258 -----EIVSGVSG------ESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTK 326 (802)
T ss_pred -----hhhcccCc------ccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccC
Confidence 22222221 122455666666666889999999996431 11 111 111111 1
Q ss_pred CCCcEEEE-EecChHHHH---hhC--CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCc----hHHH
Q 037851 280 CRGCKVLL-TARDRHVLE---SIG--SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLP----IAIV 349 (1053)
Q Consensus 280 ~~gs~iiv-TtR~~~v~~---~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlP----lai~ 349 (1053)
+.+.-||- |+|...+-. ..| .+.|.+.--++..-.++++..+.+-.-+..+ -.++|++..-|.= .|+.
T Consensus 327 g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~--d~~qlA~lTPGfVGADL~AL~ 404 (802)
T KOG0733|consen 327 GDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDF--DFKQLAKLTPGFVGADLMALC 404 (802)
T ss_pred CCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCc--CHHHHHhcCCCccchhHHHHH
Confidence 22333343 445443322 234 6778888778877777887776422211111 1456777666653 3444
Q ss_pred HHHHHH
Q 037851 350 TLAKAL 355 (1053)
Q Consensus 350 ~~~~~L 355 (1053)
..|+..
T Consensus 405 ~~Aa~v 410 (802)
T KOG0733|consen 405 REAAFV 410 (802)
T ss_pred HHHHHH
Confidence 444443
No 204
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.92 E-value=0.072 Score=57.62 Aligned_cols=174 Identities=13% Similarity=0.058 Sum_probs=94.6
Q ss_pred HHHHHHHHhcCCC-eeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhCCC-------
Q 037851 161 TLKSLQNALLDPD-VTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLGMQ------- 232 (1053)
Q Consensus 161 ~~~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~------- 232 (1053)
..+++.+.+..++ ...+.+.|+.|+||+++|+.++...-=.+.-+. ..+.-...+.+...-..+
T Consensus 11 ~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~--------~Cg~C~sC~~~~~g~HPD~~~i~p~ 82 (319)
T PRK06090 11 VWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSE--------ACGFCHSCELMQSGNHPDLHVIKPE 82 (319)
T ss_pred HHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCC--------CCCCCHHHHHHHcCCCCCEEEEecC
Confidence 3455666665554 357889999999999999999887531110000 000000011111000000
Q ss_pred CCCCCChhHHHHHHHHHHh----cCCcEEEEEcCCCCc--cchhhhcCCCCCCCCCcEEEEEecCh-HHHHhhC--CCcc
Q 037851 233 FDEESDVPGRARKLYARLQ----KENKILIILDNIWED--LDLEKVGVPSGNDCRGCKVLLTARDR-HVLESIG--SKTL 303 (1053)
Q Consensus 233 ~~~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtR~~-~v~~~~~--~~~~ 303 (1053)
.....-..+.++.+.+.+. .+++=++|+|+++.. ....++...+-.-..++.+|++|.+. .+..... ...+
T Consensus 83 ~~~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~ 162 (319)
T PRK06090 83 KEGKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQW 162 (319)
T ss_pred cCCCcCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeE
Confidence 0000001122233333332 355668889999765 33444443333333456666655554 4554433 5688
Q ss_pred cccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCchHHHHH
Q 037851 304 RIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPIAIVTL 351 (1053)
Q Consensus 304 ~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~ 351 (1053)
.+.+++.+++.+.+..... + ....+++.++|.|+.+..+
T Consensus 163 ~~~~~~~~~~~~~L~~~~~---~------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 163 VVTPPSTAQAMQWLKGQGI---T------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred eCCCCCHHHHHHHHHHcCC---c------hHHHHHHHcCCCHHHHHHH
Confidence 9999999999998875421 1 1456789999999877544
No 205
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.002 Score=76.20 Aligned_cols=158 Identities=12% Similarity=0.161 Sum_probs=95.7
Q ss_pred CCcccccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCC----eEEEEEEcCCcCHHHHHHHH
Q 037851 150 KGYEAFESRMSTLKSLQNALLDPDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFD----EVVFAEVSDTPDIKKVQGEL 225 (1053)
Q Consensus 150 ~~~~~~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~----~~~wv~~s~~~~~~~~~~~i 225 (1053)
....+++||++|++++++.|....-.--.++|.+|||||++|.-++.+.....-.. ..++. .|+.
T Consensus 167 gklDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~s-----LD~g------ 235 (786)
T COG0542 167 GKLDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYS-----LDLG------ 235 (786)
T ss_pred CCCCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEE-----ecHH------
Confidence 34567899999999999999743323335789999999999999998875432111 11110 0111
Q ss_pred HHHhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCccc----------hhh-hcCCCCCCCCCcEEEEEecChHH
Q 037851 226 ADQLGMQFDEESDVPGRARKLYARLQKENKILIILDNIWEDLD----------LEK-VGVPSGNDCRGCKVLLTARDRHV 294 (1053)
Q Consensus 226 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~----------~~~-l~~~~~~~~~gs~iivTtR~~~v 294 (1053)
.+.....-..+.++..+.+.+.+.+.++..|++|.+..... -.. +++++.. +.--.|-.||-++.-
T Consensus 236 --~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLAR-GeL~~IGATT~~EYR 312 (786)
T COG0542 236 --SLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALAR-GELRCIGATTLDEYR 312 (786)
T ss_pred --HHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhc-CCeEEEEeccHHHHH
Confidence 11122233345556777777777766699999999865421 111 2222222 212234456654421
Q ss_pred ---HH----hhCCCcccccCCCHHHHHHHHHHHh
Q 037851 295 ---LE----SIGSKTLRIDVLNDEEAWTLFKKMT 321 (1053)
Q Consensus 295 ---~~----~~~~~~~~l~~L~~~~~~~lf~~~~ 321 (1053)
.+ .-....+.++.-+.+++..+++-..
T Consensus 313 k~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 313 KYIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred HHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 11 1125788999999999999987554
No 206
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.91 E-value=0.019 Score=60.99 Aligned_cols=56 Identities=21% Similarity=0.169 Sum_probs=37.2
Q ss_pred HHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHH
Q 037851 160 STLKSLQNALLDPDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQ 222 (1053)
Q Consensus 160 ~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 222 (1053)
+.++++..++..+ .-|.+.|++|+|||++|+.+++... ...+++++....+..+++
T Consensus 9 ~l~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~lg-----~~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 9 RVTSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARKRD-----RPVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHHhC-----CCEEEEeCCccCCHHHHh
Confidence 3455666666543 3566899999999999999997442 124556666655555544
No 207
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.91 E-value=0.012 Score=73.54 Aligned_cols=131 Identities=16% Similarity=0.193 Sum_probs=72.7
Q ss_pred ccccchHHHHHHHHHHhcC-------C--CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHH
Q 037851 153 EAFESRMSTLKSLQNALLD-------P--DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQG 223 (1053)
Q Consensus 153 ~~~~gR~~~~~~l~~~l~~-------~--~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 223 (1053)
..++|.+..++.+.+.+.. + ...++.++|+.|+|||++|+.++..... .-...+.++.+...+...+
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~--~~~~~i~~d~s~~~~~~~~-- 640 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFD--DEDAMVRIDMSEYMEKHSV-- 640 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcC--CCCcEEEEechhhcccchH--
Confidence 3578888888888877752 1 1356889999999999999999987642 1234455665543321111
Q ss_pred HHHHHhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCc--cchhhhcCCCCCC-----------CCCcEEEEEec
Q 037851 224 ELADQLGMQFDEESDVPGRARKLYARLQKENKILIILDNIWED--LDLEKVGVPSGND-----------CRGCKVLLTAR 290 (1053)
Q Consensus 224 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~--~~~~~l~~~~~~~-----------~~gs~iivTtR 290 (1053)
.+-+|... ..... .....+.+.+......+|+||++... ..+..+...+..+ ...+-||+||.
T Consensus 641 --~~l~g~~~-g~~g~-~~~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn 716 (852)
T TIGR03346 641 --ARLIGAPP-GYVGY-EEGGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSN 716 (852)
T ss_pred --HHhcCCCC-CccCc-ccccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCC
Confidence 11122221 11111 11123444444344458999999755 3344443333221 13344777877
Q ss_pred C
Q 037851 291 D 291 (1053)
Q Consensus 291 ~ 291 (1053)
-
T Consensus 717 ~ 717 (852)
T TIGR03346 717 L 717 (852)
T ss_pred c
Confidence 5
No 208
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.84 E-value=0.035 Score=60.14 Aligned_cols=174 Identities=11% Similarity=0.042 Sum_probs=95.6
Q ss_pred HHHHHHHhcCCCe-eEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhCCC-----C-C
Q 037851 162 LKSLQNALLDPDV-TITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLGMQ-----F-D 234 (1053)
Q Consensus 162 ~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~-----~-~ 234 (1053)
.+.+.+.+..+++ ....+.|+.|+||+++|+.++...-=...... ...+.-...+.+...-..+ . +
T Consensus 11 ~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~-------~~Cg~C~sC~~~~~g~HPD~~~i~p~~ 83 (325)
T PRK06871 11 YQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGD-------QPCGQCHSCHLFQAGNHPDFHILEPID 83 (325)
T ss_pred HHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCC-------CCCCCCHHHHHHhcCCCCCEEEEcccc
Confidence 4556666665553 56779999999999999999987531111100 0001111111111100000 0 0
Q ss_pred CCCChhHHHHHHHHHHh----cCCcEEEEEcCCCCcc--chhhhcCCCCCCCCCcEEEEEecCh-HHHHhhC--CCcccc
Q 037851 235 EESDVPGRARKLYARLQ----KENKILIILDNIWEDL--DLEKVGVPSGNDCRGCKVLLTARDR-HVLESIG--SKTLRI 305 (1053)
Q Consensus 235 ~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~iivTtR~~-~v~~~~~--~~~~~l 305 (1053)
...-..+.++.+.+.+. .+++=++|+|+++... ...++...+-.-..++.+|++|.+. .+..... ...+.+
T Consensus 84 ~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~ 163 (325)
T PRK06871 84 NKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLI 163 (325)
T ss_pred CCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeC
Confidence 00011133344444432 3566788899997653 3344433333333456666666654 4443333 568899
Q ss_pred cCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCchHH
Q 037851 306 DVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPIAI 348 (1053)
Q Consensus 306 ~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai 348 (1053)
.+++.++..+.+.+.... . ...+...+..++|.|..+
T Consensus 164 ~~~~~~~~~~~L~~~~~~--~----~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 164 HPPEEQQALDWLQAQSSA--E----ISEILTALRINYGRPLLA 200 (325)
T ss_pred CCCCHHHHHHHHHHHhcc--C----hHHHHHHHHHcCCCHHHH
Confidence 999999999988876421 1 112566788999999644
No 209
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.79 E-value=0.042 Score=62.54 Aligned_cols=88 Identities=19% Similarity=0.277 Sum_probs=50.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCc-CHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhc
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTP-DIKKVQGELADQLGMQFDEESDVPGRARKLYARLQK 252 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 252 (1053)
..+|+|+|.+|+||||++..++.....+.....+..++..... ...+.++...+.++.......+. .......+.+
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~-~~L~~aL~~l-- 426 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSA-ESLLDLLERL-- 426 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcH-HHHHHHHHHh--
Confidence 4799999999999999999998876543323445566553221 22333333344444333322222 2233444444
Q ss_pred CCcEEEEEcCCC
Q 037851 253 ENKILIILDNIW 264 (1053)
Q Consensus 253 ~~~~LlvlDdv~ 264 (1053)
.+.=+|++|..-
T Consensus 427 ~~~DLVLIDTaG 438 (559)
T PRK12727 427 RDYKLVLIDTAG 438 (559)
T ss_pred ccCCEEEecCCC
Confidence 235588888874
No 210
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.79 E-value=0.0083 Score=60.28 Aligned_cols=89 Identities=24% Similarity=0.301 Sum_probs=56.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCC-cCHHHHHHHHHHHhCCCCCC---CCChhHHHHHHHHH
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDT-PDIKKVQGELADQLGMQFDE---ESDVPGRARKLYAR 249 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l~~~ 249 (1053)
++||.++|+.|+||||.+.+++.....+ -..+..++.... ....+-++..++.++.+... ..+..+...+..+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 3789999999999999999988887754 445677776543 35667778889998876322 22232333334444
Q ss_pred HhcCCcEEEEEcCCC
Q 037851 250 LQKENKILIILDNIW 264 (1053)
Q Consensus 250 l~~~~~~LlvlDdv~ 264 (1053)
....+.=+|++|-.-
T Consensus 79 ~~~~~~D~vlIDT~G 93 (196)
T PF00448_consen 79 FRKKGYDLVLIDTAG 93 (196)
T ss_dssp HHHTTSSEEEEEE-S
T ss_pred HhhcCCCEEEEecCC
Confidence 433334477777663
No 211
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.79 E-value=0.0089 Score=64.57 Aligned_cols=116 Identities=16% Similarity=0.182 Sum_probs=68.7
Q ss_pred chHHHHHHHHHHhcC----CCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhCCC
Q 037851 157 SRMSTLKSLQNALLD----PDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLGMQ 232 (1053)
Q Consensus 157 gR~~~~~~l~~~l~~----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 232 (1053)
+|........+++.. ...+-+.++|..|+|||.||.++++....+ .+ .+.|++++ +++.++.......
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~-g~-~v~~~~~~------~l~~~lk~~~~~~ 206 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKK-GV-SSTLLHFP------EFIRELKNSISDG 206 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHc-CC-CEEEEEHH------HHHHHHHHHHhcC
Confidence 455555555555541 234679999999999999999999998732 23 34556553 4555555444211
Q ss_pred CCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCc--cchhh--hcCCCCC-C-CCCcEEEEEecC
Q 037851 233 FDEESDVPGRARKLYARLQKENKILIILDNIWED--LDLEK--VGVPSGN-D-CRGCKVLLTARD 291 (1053)
Q Consensus 233 ~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~--~~~~~--l~~~~~~-~-~~gs~iivTtR~ 291 (1053)
. .....+.+ .+-=||||||+..+ ..|.. +...... . ..+-.+|+||--
T Consensus 207 -----~----~~~~l~~l--~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 207 -----S----VKEKIDAV--KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred -----c----HHHHHHHh--cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 1 22334445 36679999999643 44532 3222211 1 234567888863
No 212
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.78 E-value=0.0033 Score=64.23 Aligned_cols=36 Identities=28% Similarity=0.433 Sum_probs=29.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEE
Q 037851 175 TITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEV 212 (1053)
Q Consensus 175 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 212 (1053)
-.++|+|..|.||||++..+..... ..|+.+++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~--~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLR--HKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhc--ccCCEEEEEec
Confidence 3678999999999999999998866 67877776654
No 213
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.0037 Score=68.76 Aligned_cols=88 Identities=25% Similarity=0.286 Sum_probs=58.7
Q ss_pred hHHHHHHHHHHhcCCC---------eeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHH
Q 037851 158 RMSTLKSLQNALLDPD---------VTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQ 228 (1053)
Q Consensus 158 R~~~~~~l~~~l~~~~---------~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 228 (1053)
-.+|+++|+++|.++. ++=|.++|++|.|||-||++++-...+- +|......|+. +.-.
T Consensus 312 AK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VP------FF~~sGSEFdE------m~VG 379 (752)
T KOG0734|consen 312 AKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVP------FFYASGSEFDE------MFVG 379 (752)
T ss_pred HHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCC------eEeccccchhh------hhhc
Confidence 4567888999998642 4678999999999999999999876642 22223333331 1111
Q ss_pred hCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCc
Q 037851 229 LGMQFDEESDVPGRARKLYARLQKENKILIILDNIWED 266 (1053)
Q Consensus 229 l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~ 266 (1053)
.| ..++..+...-+..-+++|++|.++..
T Consensus 380 vG---------ArRVRdLF~aAk~~APcIIFIDEiDav 408 (752)
T KOG0734|consen 380 VG---------ARRVRDLFAAAKARAPCIIFIDEIDAV 408 (752)
T ss_pred cc---------HHHHHHHHHHHHhcCCeEEEEechhhh
Confidence 11 134556666666678899999998654
No 214
>PRK08181 transposase; Validated
Probab=96.75 E-value=0.002 Score=67.90 Aligned_cols=79 Identities=20% Similarity=0.184 Sum_probs=48.9
Q ss_pred HHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhCCCCCCCCChhHHHHHH
Q 037851 167 NALLDPDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLGMQFDEESDVPGRARKL 246 (1053)
Q Consensus 167 ~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l 246 (1053)
+|+. +..-+.++|++|+|||.||..+++....+ ...++|+++ .+++..+..... .. .....
T Consensus 101 ~~~~--~~~nlll~Gp~GtGKTHLa~Aia~~a~~~--g~~v~f~~~------~~L~~~l~~a~~-----~~----~~~~~ 161 (269)
T PRK08181 101 SWLA--KGANLLLFGPPGGGKSHLAAAIGLALIEN--GWRVLFTRT------TDLVQKLQVARR-----EL----QLESA 161 (269)
T ss_pred HHHh--cCceEEEEecCCCcHHHHHHHHHHHHHHc--CCceeeeeH------HHHHHHHHHHHh-----CC----cHHHH
Confidence 4654 33568999999999999999999887532 234555543 445555543321 11 12234
Q ss_pred HHHHhcCCcEEEEEcCCCCc
Q 037851 247 YARLQKENKILIILDNIWED 266 (1053)
Q Consensus 247 ~~~l~~~~~~LlvlDdv~~~ 266 (1053)
.+.+ .+.=|||+||+...
T Consensus 162 l~~l--~~~dLLIIDDlg~~ 179 (269)
T PRK08181 162 IAKL--DKFDLLILDDLAYV 179 (269)
T ss_pred HHHH--hcCCEEEEeccccc
Confidence 4444 24569999999543
No 215
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.74 E-value=0.01 Score=56.76 Aligned_cols=127 Identities=17% Similarity=0.247 Sum_probs=73.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEE---c------------------------------------
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEV---S------------------------------------ 213 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~---s------------------------------------ 213 (1053)
...++.++|++|.||||+.+.+|...+.. .+.+|+.- +
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e~pt---~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~p 103 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALP 103 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhhcCC---CceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhh
Confidence 45789999999999999999999987632 22233321 0
Q ss_pred ------CCcCHHHHHHHHHHHhCCCCC-----CC-CChhHHHHHHHHHHhcCCcEEEEEcCC----CCccchhhhcCCCC
Q 037851 214 ------DTPDIKKVQGELADQLGMQFD-----EE-SDVPGRARKLYARLQKENKILIILDNI----WEDLDLEKVGVPSG 277 (1053)
Q Consensus 214 ------~~~~~~~~~~~i~~~l~~~~~-----~~-~~~~~~~~~l~~~l~~~~~~LlvlDdv----~~~~~~~~l~~~~~ 277 (1053)
+...+++-..+.++..+.... .+ +.-++.--.+.+.+- +++-+++-|.- +.+..|+-+...-.
T Consensus 104 L~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV-~~P~vLlADEPTGNLDp~~s~~im~lfee 182 (223)
T COG2884 104 LRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIV-NQPAVLLADEPTGNLDPDLSWEIMRLFEE 182 (223)
T ss_pred hhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHc-cCCCeEeecCCCCCCChHHHHHHHHHHHH
Confidence 011122223333343333211 11 111223334555554 78889998864 44445544322222
Q ss_pred CCCCCcEEEEEecChHHHHhhCCCcc
Q 037851 278 NDCRGCKVLLTARDRHVLESIGSKTL 303 (1053)
Q Consensus 278 ~~~~gs~iivTtR~~~v~~~~~~~~~ 303 (1053)
-+..|..|+++|.+.++...+...++
T Consensus 183 inr~GtTVl~ATHd~~lv~~~~~rvl 208 (223)
T COG2884 183 INRLGTTVLMATHDLELVNRMRHRVL 208 (223)
T ss_pred HhhcCcEEEEEeccHHHHHhccCcEE
Confidence 34569999999999998887664443
No 216
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.74 E-value=0.015 Score=71.76 Aligned_cols=171 Identities=15% Similarity=0.236 Sum_probs=97.3
Q ss_pred cccccchHHHHHHHHHHhc----C---------CCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCH
Q 037851 152 YEAFESRMSTLKSLQNALL----D---------PDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDI 218 (1053)
Q Consensus 152 ~~~~~gR~~~~~~l~~~l~----~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 218 (1053)
...+.|.+..++++.+.+. . ...+-+.++|++|+|||++|+.+++... ..| +.+...
T Consensus 452 ~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~--~~f-----i~v~~~--- 521 (733)
T TIGR01243 452 WSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESG--ANF-----IAVRGP--- 521 (733)
T ss_pred hhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC--CCE-----EEEehH---
Confidence 3456677777666655442 1 1245688999999999999999999865 222 333221
Q ss_pred HHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCcc---------c-----hhhhcCCCCC--CCCC
Q 037851 219 KKVQGELADQLGMQFDEESDVPGRARKLYARLQKENKILIILDNIWEDL---------D-----LEKVGVPSGN--DCRG 282 (1053)
Q Consensus 219 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~---------~-----~~~l~~~~~~--~~~g 282 (1053)
+ +.... ....+..+..+.+......+.+|++|+++... . ...+...+.. ...+
T Consensus 522 -~----l~~~~------vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~ 590 (733)
T TIGR01243 522 -E----ILSKW------VGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSN 590 (733)
T ss_pred -H----Hhhcc------cCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCC
Confidence 1 11111 01112334455555545678999999986421 0 1112222211 1234
Q ss_pred cEEEEEecChHHHHh--h--C--CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCc
Q 037851 283 CKVLLTARDRHVLES--I--G--SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLP 345 (1053)
Q Consensus 283 s~iivTtR~~~v~~~--~--~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlP 345 (1053)
..||.||...+.... . + ...+.+...+.++-.++|+.+.......++. -...+++.+.|.-
T Consensus 591 v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~--~l~~la~~t~g~s 657 (733)
T TIGR01243 591 VVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDV--DLEELAEMTEGYT 657 (733)
T ss_pred EEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccC--CHHHHHHHcCCCC
Confidence 556777766544332 1 2 5678888899999999998776532221111 1456778888765
No 217
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.72 E-value=0.0026 Score=61.31 Aligned_cols=80 Identities=21% Similarity=0.358 Sum_probs=41.6
Q ss_pred CcEEEcCCcccCCccccCCCCCCcEEEccCCCCcccchhhhc-cCCCCeeeccCcccccccC-cchhcCCccCceeeccc
Q 037851 553 LRTLCLDGCELEDIRVIGELKDLEILSLQGSKIEQLPREIGQ-LTQLKLLDLSNCSKLKVIA-PNVLSNLSQLEELYMAN 630 (1053)
Q Consensus 553 Lr~L~L~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~-L~~L~~L~l~~~~~l~~~~-~~~l~~l~~L~~L~l~~ 630 (1053)
.-.+||++|.+.....+..++.|.+|.+.+|.|..+-+.+.. +++|..|.+.+ +++..+. -..+..++.|+.|.+-+
T Consensus 44 ~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn-Nsi~~l~dl~pLa~~p~L~~Ltll~ 122 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN-NSIQELGDLDPLASCPKLEYLTLLG 122 (233)
T ss_pred cceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecC-cchhhhhhcchhccCCccceeeecC
Confidence 445555555555555555566666666666666655444433 34466666655 2333221 01144555666666555
Q ss_pred ccc
Q 037851 631 CSI 633 (1053)
Q Consensus 631 ~~~ 633 (1053)
|..
T Consensus 123 Npv 125 (233)
T KOG1644|consen 123 NPV 125 (233)
T ss_pred Cch
Confidence 543
No 218
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.71 E-value=0.00015 Score=64.95 Aligned_cols=79 Identities=19% Similarity=0.286 Sum_probs=34.7
Q ss_pred cCccCcEEEcCCcccCC-cccc-CCCCCCcEEEccCCCCcccchhhhccCCCCeeeccCcccccccCcchhcCCccCcee
Q 037851 549 LLTDLRTLCLDGCELED-IRVI-GELKDLEILSLQGSKIEQLPREIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEEL 626 (1053)
Q Consensus 549 ~l~~Lr~L~L~~~~~~~-~~~i-~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L 626 (1053)
+..+|...+|++|.+++ |+.+ .+.+-+.+|++.+|.|.++|.++..++.|+.|+++. +.+...| ..+..|.+|-.|
T Consensus 51 ~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~-N~l~~~p-~vi~~L~~l~~L 128 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRF-NPLNAEP-RVIAPLIKLDML 128 (177)
T ss_pred CCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccccc-Cccccch-HHHHHHHhHHHh
Confidence 33444444455544443 2222 222344455555555555555555555555555554 2333332 223334444444
Q ss_pred ecc
Q 037851 627 YMA 629 (1053)
Q Consensus 627 ~l~ 629 (1053)
+..
T Consensus 129 ds~ 131 (177)
T KOG4579|consen 129 DSP 131 (177)
T ss_pred cCC
Confidence 433
No 219
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.69 E-value=0.00032 Score=62.87 Aligned_cols=87 Identities=21% Similarity=0.302 Sum_probs=61.5
Q ss_pred CCCceeEEeecCccccCCCccccc-CccCcEEEcCCcccCC-ccccCCCCCCcEEEccCCCCcccchhhhccCCCCeeec
Q 037851 526 GTPKLKVLDFTRMRLLSLPSSIHL-LTDLRTLCLDGCELED-IRVIGELKDLEILSLQGSKIEQLPREIGQLTQLKLLDL 603 (1053)
Q Consensus 526 ~~~~Lr~L~l~~~~~~~lp~~i~~-l~~Lr~L~L~~~~~~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l 603 (1053)
....|...++++|.+..+|+.+.. .+-+..|++++|.+.+ |..+..++.|+.|+++.|.+...|.-|..|.+|-.|+.
T Consensus 51 ~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDS 130 (177)
T ss_pred CCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcC
Confidence 345666777777777777776543 3467777777777776 66677777888888888888777877777888888877
Q ss_pred cCcccccccC
Q 037851 604 SNCSKLKVIA 613 (1053)
Q Consensus 604 ~~~~~l~~~~ 613 (1053)
.+ +....++
T Consensus 131 ~~-na~~eid 139 (177)
T KOG4579|consen 131 PE-NARAEID 139 (177)
T ss_pred CC-CccccCc
Confidence 76 3444444
No 220
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.69 E-value=0.0043 Score=59.85 Aligned_cols=106 Identities=25% Similarity=0.375 Sum_probs=75.9
Q ss_pred CcEEEcCCcccCCccccCC-CCCCcEEEccCCCCcccchhhhccCCCCeeeccCcccccccCcchhcCCccCceeecccc
Q 037851 553 LRTLCLDGCELEDIRVIGE-LKDLEILSLQGSKIEQLPREIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANC 631 (1053)
Q Consensus 553 Lr~L~L~~~~~~~~~~i~~-l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 631 (1053)
=+.++|++.++..+..+|- +.+...+||+.|++..++ .+..+.+|.+|.+.+ +.+..+.|..-.-+++|+.|.+.+|
T Consensus 21 e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~n-NrIt~I~p~L~~~~p~l~~L~LtnN 98 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNN-NRITRIDPDLDTFLPNLKTLILTNN 98 (233)
T ss_pred ccccccccccccchhhccccccccceecccccchhhcc-cCCCccccceEEecC-CcceeeccchhhhccccceEEecCc
Confidence 3455555555443333332 345678999999998777 567899999999998 6888887764445778999999999
Q ss_pred cccccccCCcccccCCChhhhcCCCCCCeEEEEeccCCC
Q 037851 632 SIEWEHLGPGIERSNASLDELKNLSRLTSLEINILDAGI 670 (1053)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~ 670 (1053)
++. .-..+.-|..+++|+.|.+-++....
T Consensus 99 si~----------~l~dl~pLa~~p~L~~Ltll~Npv~~ 127 (233)
T KOG1644|consen 99 SIQ----------ELGDLDPLASCPKLEYLTLLGNPVEH 127 (233)
T ss_pred chh----------hhhhcchhccCCccceeeecCCchhc
Confidence 872 23445667778889998888776543
No 221
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.66 E-value=0.0052 Score=64.48 Aligned_cols=75 Identities=21% Similarity=0.259 Sum_probs=50.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhc
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLGMQFDEESDVPGRARKLYARLQK 252 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 252 (1053)
+..-+.++|.+|+|||.||.++.++.. +..+ .+.|++ ..+++.++....... ....++.+.+
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~-sv~f~~------~~el~~~Lk~~~~~~--------~~~~~l~~~l-- 165 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-KAGI-SVLFIT------APDLLSKLKAAFDEG--------RLEEKLLREL-- 165 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-HcCC-eEEEEE------HHHHHHHHHHHHhcC--------chHHHHHHHh--
Confidence 667899999999999999999999987 3323 345554 445566665554321 1223444444
Q ss_pred CCcEEEEEcCCCC
Q 037851 253 ENKILIILDNIWE 265 (1053)
Q Consensus 253 ~~~~LlvlDdv~~ 265 (1053)
.+-=||||||+-.
T Consensus 166 ~~~dlLIiDDlG~ 178 (254)
T COG1484 166 KKVDLLIIDDIGY 178 (254)
T ss_pred hcCCEEEEecccC
Confidence 3456999999954
No 222
>PRK07261 topology modulation protein; Provisional
Probab=96.66 E-value=0.0059 Score=60.11 Aligned_cols=34 Identities=26% Similarity=0.514 Sum_probs=25.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhc-CCCCeEEE
Q 037851 176 ITGVYGMGGLGKTTLVKEVARQVKKD-KHFDEVVF 209 (1053)
Q Consensus 176 vi~I~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~w 209 (1053)
.|.|+|++|+||||||+.+....... -+.|...|
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~ 36 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHF 36 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence 48999999999999999998775421 13344444
No 223
>PRK06526 transposase; Provisional
Probab=96.58 E-value=0.0027 Score=66.57 Aligned_cols=74 Identities=22% Similarity=0.188 Sum_probs=44.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhcC
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLGMQFDEESDVPGRARKLYARLQKE 253 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 253 (1053)
..-+.++|++|+|||+||..+.......+ + .+.|+ +..++...+..... .. ........+ .
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g-~-~v~f~------t~~~l~~~l~~~~~-----~~----~~~~~l~~l--~ 158 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAG-H-RVLFA------TAAQWVARLAAAHH-----AG----RLQAELVKL--G 158 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCC-C-chhhh------hHHHHHHHHHHHHh-----cC----cHHHHHHHh--c
Confidence 35689999999999999999998875432 2 23333 33445555443311 01 111222333 3
Q ss_pred CcEEEEEcCCCCc
Q 037851 254 NKILIILDNIWED 266 (1053)
Q Consensus 254 ~~~LlvlDdv~~~ 266 (1053)
+.-+||+||+...
T Consensus 159 ~~dlLIIDD~g~~ 171 (254)
T PRK06526 159 RYPLLIVDEVGYI 171 (254)
T ss_pred cCCEEEEcccccC
Confidence 4568999999643
No 224
>PRK06921 hypothetical protein; Provisional
Probab=96.55 E-value=0.0063 Score=64.42 Aligned_cols=71 Identities=20% Similarity=0.318 Sum_probs=45.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhc
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLGMQFDEESDVPGRARKLYARLQK 252 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 252 (1053)
....+.++|..|+|||.||.++++....+. -..++|++.. +++..+.... .......+.+
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~-g~~v~y~~~~------~l~~~l~~~~-----------~~~~~~~~~~-- 175 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKK-GVPVLYFPFV------EGFGDLKDDF-----------DLLEAKLNRM-- 175 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhc-CceEEEEEHH------HHHHHHHHHH-----------HHHHHHHHHh--
Confidence 356799999999999999999999876331 2456677642 2333332221 0112233344
Q ss_pred CCcEEEEEcCC
Q 037851 253 ENKILIILDNI 263 (1053)
Q Consensus 253 ~~~~LlvlDdv 263 (1053)
.+-=||||||+
T Consensus 176 ~~~dlLiIDDl 186 (266)
T PRK06921 176 KKVEVLFIDDL 186 (266)
T ss_pred cCCCEEEEecc
Confidence 34569999999
No 225
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.54 E-value=0.036 Score=58.01 Aligned_cols=168 Identities=16% Similarity=0.178 Sum_probs=95.5
Q ss_pred ccccchHHHHHHHHHHhc----CCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCc-----CHHHHHH
Q 037851 153 EAFESRMSTLKSLQNALL----DPDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTP-----DIKKVQG 223 (1053)
Q Consensus 153 ~~~~gR~~~~~~l~~~l~----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-----~~~~~~~ 223 (1053)
..++|-.++..++-.++. .+...-|.|+|+.|.|||+|......+.+ ..=+..+-|...... .++.+..
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q--~~~E~~l~v~Lng~~~~dk~al~~I~r 101 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQ--ENGENFLLVRLNGELQTDKIALKGITR 101 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHH--hcCCeEEEEEECccchhhHHHHHHHHH
Confidence 356777777777777665 34556788999999999999988877722 111233334443332 2334444
Q ss_pred HHHHHhCCCCCCCCChhHHHHHHHHHHhc-----CCcEEEEEcCCCCccc-------hhhhcCCCCCCCCCcEEEEEecC
Q 037851 224 ELADQLGMQFDEESDVPGRARKLYARLQK-----ENKILIILDNIWEDLD-------LEKVGVPSGNDCRGCKVLLTARD 291 (1053)
Q Consensus 224 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~-----~~~~LlvlDdv~~~~~-------~~~l~~~~~~~~~gs~iivTtR~ 291 (1053)
++..++...........+....+...+.. +.+++.|+|+++-... ..-+...-....+-+-|-+|||-
T Consensus 102 ql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrl 181 (408)
T KOG2228|consen 102 QLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRL 181 (408)
T ss_pred HHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccc
Confidence 44444433333333333445666666652 3458888888764321 11111111123455677899996
Q ss_pred hHHH-------HhhCC-CcccccCCCHHHHHHHHHHHhC
Q 037851 292 RHVL-------ESIGS-KTLRIDVLNDEEAWTLFKKMTG 322 (1053)
Q Consensus 292 ~~v~-------~~~~~-~~~~l~~L~~~~~~~lf~~~~~ 322 (1053)
.-.. ..... .++-+..++-+|...++++...
T Consensus 182 d~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll~ 220 (408)
T KOG2228|consen 182 DILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLLS 220 (408)
T ss_pred cHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHhc
Confidence 5322 12222 3556677888888888887763
No 226
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.53 E-value=0.0056 Score=70.19 Aligned_cols=75 Identities=24% Similarity=0.307 Sum_probs=56.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhc
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLGMQFDEESDVPGRARKLYARLQK 252 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 252 (1053)
.-++..++|++|+||||||..+++... | .++-|++|+..+...+-..|...+....-... .
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqaG----Y-sVvEINASDeRt~~~v~~kI~~avq~~s~l~a--------------d 385 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQAG----Y-SVVEINASDERTAPMVKEKIENAVQNHSVLDA--------------D 385 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhcC----c-eEEEecccccccHHHHHHHHHHHHhhcccccc--------------C
Confidence 458999999999999999999998754 3 46778899988887777777665543211111 3
Q ss_pred CCcEEEEEcCCCCc
Q 037851 253 ENKILIILDNIWED 266 (1053)
Q Consensus 253 ~~~~LlvlDdv~~~ 266 (1053)
+++..||+|.++..
T Consensus 386 srP~CLViDEIDGa 399 (877)
T KOG1969|consen 386 SRPVCLVIDEIDGA 399 (877)
T ss_pred CCcceEEEecccCC
Confidence 68899999999765
No 227
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.53 E-value=0.0093 Score=61.27 Aligned_cols=46 Identities=26% Similarity=0.381 Sum_probs=36.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHH
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQ 222 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 222 (1053)
..++.|+|.+|+|||++|.+++..... .-..++|++... ++...+.
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~--~g~~v~yi~~e~-~~~~rl~ 57 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAAR--QGKKVVYIDTEG-LSPERFK 57 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh--CCCeEEEEECCC-CCHHHHH
Confidence 579999999999999999999887652 346789999876 5555443
No 228
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.48 E-value=0.023 Score=70.24 Aligned_cols=174 Identities=17% Similarity=0.212 Sum_probs=94.9
Q ss_pred CcccccchHHHHHHHHHHhc----C---------CCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcC
Q 037851 151 GYEAFESRMSTLKSLQNALL----D---------PDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPD 217 (1053)
Q Consensus 151 ~~~~~~gR~~~~~~l~~~l~----~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 217 (1053)
...++.|.++.++++.+++. . ...+-|.++|++|+|||++|+.+++... ..| +.++.+.
T Consensus 176 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~--~~~---i~i~~~~--- 247 (733)
T TIGR01243 176 TYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAG--AYF---ISINGPE--- 247 (733)
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhC--CeE---EEEecHH---
Confidence 34557899988888877653 1 1246788999999999999999998764 111 2222211
Q ss_pred HHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCcc-------------chhhhcCCCCC-CCCCc
Q 037851 218 IKKVQGELADQLGMQFDEESDVPGRARKLYARLQKENKILIILDNIWEDL-------------DLEKVGVPSGN-DCRGC 283 (1053)
Q Consensus 218 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~-------------~~~~l~~~~~~-~~~gs 283 (1053)
+. ... ..........+.+......+.+|++||++... ....+...+.. ...+.
T Consensus 248 ---i~----~~~------~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~ 314 (733)
T TIGR01243 248 ---IM----SKY------YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGR 314 (733)
T ss_pred ---Hh----ccc------ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCC
Confidence 11 000 00111233444444444667899999985421 01112111111 11233
Q ss_pred EEEE-EecChHHHH-h---hC--CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCchH
Q 037851 284 KVLL-TARDRHVLE-S---IG--SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPIA 347 (1053)
Q Consensus 284 ~iiv-TtR~~~v~~-~---~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPla 347 (1053)
.++| ||....-.. . .+ ...+.+...+.++-.++++.+........ ......+++.+.|.--|
T Consensus 315 vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~--d~~l~~la~~t~G~~ga 383 (733)
T TIGR01243 315 VIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAE--DVDLDKLAEVTHGFVGA 383 (733)
T ss_pred EEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCcc--ccCHHHHHHhCCCCCHH
Confidence 3444 554432111 1 12 45677888888988888886654221111 11256788888887543
No 229
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.46 E-value=0.0026 Score=58.80 Aligned_cols=24 Identities=38% Similarity=0.526 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 176 ITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 176 vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
+|.|.|++|+||||+|+.+++...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~ 24 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG 24 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
Confidence 689999999999999999999863
No 230
>PRK04132 replication factor C small subunit; Provisional
Probab=96.46 E-value=0.047 Score=66.43 Aligned_cols=154 Identities=13% Similarity=0.083 Sum_probs=93.4
Q ss_pred CCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEc
Q 037851 182 MGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLGMQFDEESDVPGRARKLYARLQKENKILIILD 261 (1053)
Q Consensus 182 ~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlD 261 (1053)
+.++||||+|..++++.-..+.-..++-+++++..+...+. ++++.+....+ +...+.-++|+|
T Consensus 574 Ph~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR-~iIk~~a~~~~---------------~~~~~~KVvIID 637 (846)
T PRK04132 574 PTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIR-EKVKEFARTKP---------------IGGASFKIIFLD 637 (846)
T ss_pred CCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHH-HHHHHHHhcCC---------------cCCCCCEEEEEE
Confidence 77999999999999986322111346778888765555443 33332211000 001246799999
Q ss_pred CCCCcc--chhhhcCCCCCCCCCcEEEEEecChH-HHHhhC--CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHH
Q 037851 262 NIWEDL--DLEKVGVPSGNDCRGCKVLLTARDRH-VLESIG--SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATD 336 (1053)
Q Consensus 262 dv~~~~--~~~~l~~~~~~~~~gs~iivTtR~~~-v~~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~ 336 (1053)
+++... +...+...+-.....+++|++|.+.. +..... ...+++.+++.++....+.+.+....- .--++....
T Consensus 638 EaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi-~i~~e~L~~ 716 (846)
T PRK04132 638 EADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGL-ELTEEGLQA 716 (846)
T ss_pred CcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCC-CCCHHHHHH
Confidence 998763 44444443333234566666665543 332222 568899999999999888877642211 112457889
Q ss_pred HHHHhCCCchHHHHHH
Q 037851 337 VAKECGGLPIAIVTLA 352 (1053)
Q Consensus 337 i~~~~~GlPlai~~~~ 352 (1053)
|++.++|.+..+..+-
T Consensus 717 Ia~~s~GDlR~AIn~L 732 (846)
T PRK04132 717 ILYIAEGDMRRAINIL 732 (846)
T ss_pred HHHHcCCCHHHHHHHH
Confidence 9999999885544333
No 231
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.45 E-value=0.00022 Score=71.59 Aligned_cols=105 Identities=30% Similarity=0.407 Sum_probs=69.6
Q ss_pred CccCcEEEcCCcccCCccccCCCCCCcEEEccCCCCcccchhhhccCCCCeeeccCcccccccCc-chhcCCccCceeec
Q 037851 550 LTDLRTLCLDGCELEDIRVIGELKDLEILSLQGSKIEQLPREIGQLTQLKLLDLSNCSKLKVIAP-NVLSNLSQLEELYM 628 (1053)
Q Consensus 550 l~~Lr~L~L~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~-~~l~~l~~L~~L~l 628 (1053)
+.+.+.|++.||.+.++..+.+++.|++|.|+-|+|+.|- .+.+|++|+.|+|+. +.+..+.. ..+.++++|+.|.+
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRk-N~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRK-NCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHh-cccccHHHHHHHhcCchhhhHhh
Confidence 5566777888888888777788888888888888888775 367888888888887 45554421 23567788888887
Q ss_pred ccccccccccCCcccccCCChhhhcCCCCCCeEE
Q 037851 629 ANCSIEWEHLGPGIERSNASLDELKNLSRLTSLE 662 (1053)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~ 662 (1053)
..|..-.. .........|.-|+||++|+
T Consensus 96 ~ENPCc~~------ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCCGE------AGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCcccc------cchhHHHHHHHHcccchhcc
Confidence 77654211 01222334455666666654
No 232
>PRK09183 transposase/IS protein; Provisional
Probab=96.43 E-value=0.0078 Score=63.58 Aligned_cols=26 Identities=23% Similarity=0.263 Sum_probs=22.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
...+.|+|+.|+|||+||..++....
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~ 127 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAV 127 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 35788999999999999999988754
No 233
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.41 E-value=0.019 Score=55.89 Aligned_cols=119 Identities=14% Similarity=0.140 Sum_probs=67.8
Q ss_pred chHHHHHHHHHHhcCCCe-eEEEEEcCCCCcHHHHHHHHHHHhhhcCCC------------------CeEEEEEEcCC--
Q 037851 157 SRMSTLKSLQNALLDPDV-TITGVYGMGGLGKTTLVKEVARQVKKDKHF------------------DEVVFAEVSDT-- 215 (1053)
Q Consensus 157 gR~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f------------------~~~~wv~~s~~-- 215 (1053)
|-++..+.+.+.+..++. ..+.++|+.|+||+|+|..+++..--.... .-..|+.-...
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 80 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK 80 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence 445667777777776665 468999999999999999999885422211 11233322221
Q ss_pred -cCHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCc--cchhhhcCCCCCCCCCcEEEEEecCh
Q 037851 216 -PDIKKVQGELADQLGMQFDEESDVPGRARKLYARLQKENKILIILDNIWED--LDLEKVGVPSGNDCRGCKVLLTARDR 292 (1053)
Q Consensus 216 -~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtR~~ 292 (1053)
..++++. ++.+.+..... .+++=++|+||++.. ....++...+-....++++|++|++.
T Consensus 81 ~i~i~~ir-~i~~~~~~~~~-----------------~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 81 SIKIDQIR-EIIEFLSLSPS-----------------EGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNP 142 (162)
T ss_dssp SBSHHHHH-HHHHHCTSS-T-----------------TSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-G
T ss_pred hhhHHHHH-HHHHHHHHHHh-----------------cCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECCh
Confidence 2222222 33333221110 246778999999865 34444443333333578888888876
Q ss_pred H
Q 037851 293 H 293 (1053)
Q Consensus 293 ~ 293 (1053)
+
T Consensus 143 ~ 143 (162)
T PF13177_consen 143 S 143 (162)
T ss_dssp G
T ss_pred H
Confidence 4
No 234
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.41 E-value=0.077 Score=58.21 Aligned_cols=176 Identities=10% Similarity=0.044 Sum_probs=95.6
Q ss_pred HHHHHHHHhcCCC-eeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhCCC-----CC
Q 037851 161 TLKSLQNALLDPD-VTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLGMQ-----FD 234 (1053)
Q Consensus 161 ~~~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~-----~~ 234 (1053)
.-+++.+.+..++ ..-+.+.|+.|+||+|+|..++...-=.+..+.. .+.. -.-.+.+...-..+ .+
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~---~Cg~----C~sC~~~~~g~HPD~~~i~p~ 82 (334)
T PRK07993 10 DYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHK---SCGH----CRGCQLMQAGTHPDYYTLTPE 82 (334)
T ss_pred HHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCC---CCCC----CHHHHHHHcCCCCCEEEEecc
Confidence 3456667776554 4567799999999999999998875311100000 0000 00001110000000 00
Q ss_pred C--CCChhHHHHHHHHHHh----cCCcEEEEEcCCCCcc--chhhhcCCCCCCCCCcEEEEEecCh-HHHHhhC--CCcc
Q 037851 235 E--ESDVPGRARKLYARLQ----KENKILIILDNIWEDL--DLEKVGVPSGNDCRGCKVLLTARDR-HVLESIG--SKTL 303 (1053)
Q Consensus 235 ~--~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~iivTtR~~-~v~~~~~--~~~~ 303 (1053)
. ..-..+.++.+.+.+. .+++=++|+|+++... .-..+...+-.-..++.+|++|.+. .+...+. ...+
T Consensus 83 ~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~ 162 (334)
T PRK07993 83 KGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLH 162 (334)
T ss_pred cccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccc
Confidence 0 0011133344444442 3667789999997652 3344433333223456666666654 4544433 5678
Q ss_pred cccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCchHHH
Q 037851 304 RIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPIAIV 349 (1053)
Q Consensus 304 ~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~ 349 (1053)
.+.+++.+++.+.+....+ .+ ++.+..++..++|.|..+.
T Consensus 163 ~~~~~~~~~~~~~L~~~~~--~~----~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 163 YLAPPPEQYALTWLSREVT--MS----QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred cCCCCCHHHHHHHHHHccC--CC----HHHHHHHHHHcCCCHHHHH
Confidence 9999999999988865432 11 2336788999999996543
No 235
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.40 E-value=0.015 Score=72.50 Aligned_cols=132 Identities=14% Similarity=0.171 Sum_probs=72.0
Q ss_pred ccccchHHHHHHHHHHhc-------CCC--eeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHH
Q 037851 153 EAFESRMSTLKSLQNALL-------DPD--VTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQG 223 (1053)
Q Consensus 153 ~~~~gR~~~~~~l~~~l~-------~~~--~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 223 (1053)
..++|.+..++.+.+.+. +++ ...+.++|+.|+|||+||+.+++..-. .-...+.++.++..+...+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~--~~~~~~~~d~s~~~~~~~~-- 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFG--SEDAMIRLDMSEYMEKHTV-- 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcC--CccceEEEEchhccccccH--
Confidence 457788888888877764 121 245678999999999999999987531 1123445555543322111
Q ss_pred HHHHHhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCc--cchhhhcCCCCCC-----------CCCcEEEEEec
Q 037851 224 ELADQLGMQFDEESDVPGRARKLYARLQKENKILIILDNIWED--LDLEKVGVPSGND-----------CRGCKVLLTAR 290 (1053)
Q Consensus 224 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~--~~~~~l~~~~~~~-----------~~gs~iivTtR 290 (1053)
.+-+|.+.. .... .....+.+.+.....-+|++|+++.. ..+..+...+..+ ...+-||+||.
T Consensus 585 --~~l~g~~~g-yvg~-~~~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn 660 (821)
T CHL00095 585 --SKLIGSPPG-YVGY-NEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSN 660 (821)
T ss_pred --HHhcCCCCc-ccCc-CccchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCC
Confidence 111222111 1110 11223445554344468889999755 3334433333221 23456777776
Q ss_pred Ch
Q 037851 291 DR 292 (1053)
Q Consensus 291 ~~ 292 (1053)
..
T Consensus 661 ~g 662 (821)
T CHL00095 661 LG 662 (821)
T ss_pred cc
Confidence 43
No 236
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.39 E-value=0.053 Score=61.19 Aligned_cols=128 Identities=22% Similarity=0.322 Sum_probs=83.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhcC
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLGMQFDEESDVPGRARKLYARLQKE 253 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 253 (1053)
..=|.+||++|.|||-||++|+|... -. |++|... +++... +| ..+..+..++++-+..
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag--~N-----FisVKGP----ELlNkY---VG-------ESErAVR~vFqRAR~s 603 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAG--AN-----FISVKGP----ELLNKY---VG-------ESERAVRQVFQRARAS 603 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhcc--Cc-----eEeecCH----HHHHHH---hh-------hHHHHHHHHHHHhhcC
Confidence 45688999999999999999999876 33 4555443 111111 11 1123456666666678
Q ss_pred CcEEEEEcCCCCc-------cc------hhhhcCCCCC--CCCCcEEEEEecChHHHHh----hC--CCcccccCCCHHH
Q 037851 254 NKILIILDNIWED-------LD------LEKVGVPSGN--DCRGCKVLLTARDRHVLES----IG--SKTLRIDVLNDEE 312 (1053)
Q Consensus 254 ~~~LlvlDdv~~~-------~~------~~~l~~~~~~--~~~gs~iivTtR~~~v~~~----~~--~~~~~l~~L~~~~ 312 (1053)
-+++|++|.++.. .. ...+...+.. ...|.-||-.|.-+++.+. -| +...-++.-+.+|
T Consensus 604 aPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~e 683 (802)
T KOG0733|consen 604 APCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEE 683 (802)
T ss_pred CCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHH
Confidence 9999999999643 11 2233333332 2356667777766655442 23 5677788888999
Q ss_pred HHHHHHHHhC
Q 037851 313 AWTLFKKMTG 322 (1053)
Q Consensus 313 ~~~lf~~~~~ 322 (1053)
-..+++....
T Consensus 684 R~~ILK~~tk 693 (802)
T KOG0733|consen 684 RVAILKTITK 693 (802)
T ss_pred HHHHHHHHhc
Confidence 9999998886
No 237
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.39 E-value=0.13 Score=56.24 Aligned_cols=101 Identities=18% Similarity=0.179 Sum_probs=61.9
Q ss_pred HHHHHHHHHh----cCCcEEEEEcCCCCc--cchhhhcCCCCCCCCCcEEEEEecC-hHHHHhhC--CCcccccCCCHHH
Q 037851 242 RARKLYARLQ----KENKILIILDNIWED--LDLEKVGVPSGNDCRGCKVLLTARD-RHVLESIG--SKTLRIDVLNDEE 312 (1053)
Q Consensus 242 ~~~~l~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtR~-~~v~~~~~--~~~~~l~~L~~~~ 312 (1053)
.++.+.+.+. .+++-++|+|+++.. .....+...+-.-.+++.+|++|.+ ..+..... ...+.+.+++.++
T Consensus 116 qiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~ 195 (342)
T PRK06964 116 QVRALLDFCGVGTHRGGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEA 195 (342)
T ss_pred HHHHHHHHhccCCccCCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHH
Confidence 3444544443 355668889999765 3455554444333456655555554 44444332 5688999999999
Q ss_pred HHHHHHHHhCCCCCCccchHHHHHHHHHhCCCchHHHHH
Q 037851 313 AWTLFKKMTGDCAEKGELKSIATDVAKECGGLPIAIVTL 351 (1053)
Q Consensus 313 ~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~ 351 (1053)
..+.+.... .+ + ...++..++|.|..+..+
T Consensus 196 ~~~~L~~~~---~~-~-----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 196 AAAWLAAQG---VA-D-----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred HHHHHHHcC---CC-h-----HHHHHHHcCCCHHHHHHH
Confidence 999987652 11 1 233577889999765444
No 238
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.38 E-value=0.11 Score=58.91 Aligned_cols=88 Identities=24% Similarity=0.328 Sum_probs=53.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCC-cCHHHHHHHHHHHhCCCCCCC---CChhHHHHHHHH
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDT-PDIKKVQGELADQLGMQFDEE---SDVPGRARKLYA 248 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~l~~ 248 (1053)
.+.+|.++|..|+||||.|..++.....++ + .+..|++... ....+.++.++++++.+.... .+....+....+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g-~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~ 171 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKG-L-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLE 171 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcC-C-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 467999999999999999999998887433 2 3444554332 223455666777766543222 222222333334
Q ss_pred HHhcCCcEEEEEcCCC
Q 037851 249 RLQKENKILIILDNIW 264 (1053)
Q Consensus 249 ~l~~~~~~LlvlDdv~ 264 (1053)
+.. +. -+||+|..-
T Consensus 172 ~~~-~~-DvVIIDTAG 185 (437)
T PRK00771 172 KFK-KA-DVIIVDTAG 185 (437)
T ss_pred Hhh-cC-CEEEEECCC
Confidence 442 33 568888874
No 239
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.36 E-value=0.017 Score=66.79 Aligned_cols=57 Identities=21% Similarity=0.296 Sum_probs=43.1
Q ss_pred cccccchHHHHHHHHHHhcC-----CCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEE
Q 037851 152 YEAFESRMSTLKSLQNALLD-----PDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEV 212 (1053)
Q Consensus 152 ~~~~~gR~~~~~~l~~~l~~-----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 212 (1053)
..++.--.+.++++..||.+ ...+++.+.|++|+||||.++.+++... |+.+-|.+-
T Consensus 18 ~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg----~~v~Ew~np 79 (519)
T PF03215_consen 18 LDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG----FEVQEWINP 79 (519)
T ss_pred HHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC----CeeEEecCC
Confidence 44555556778888888862 2357999999999999999999998864 666667543
No 240
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.051 Score=62.19 Aligned_cols=175 Identities=15% Similarity=0.177 Sum_probs=92.2
Q ss_pred CCCCcccccchHHHHHHHHHHhcC-------------CCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcC
Q 037851 148 SGKGYEAFESRMSTLKSLQNALLD-------------PDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSD 214 (1053)
Q Consensus 148 ~~~~~~~~~gR~~~~~~l~~~l~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~ 214 (1053)
|...-.++-|-++.+.+|.+.... ...+-|..+|++|.|||++|+++++... ..| +.++.
T Consensus 429 p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~--~nF-----lsvkg 501 (693)
T KOG0730|consen 429 PNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAG--MNF-----LSVKG 501 (693)
T ss_pred CCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhc--CCe-----eeccC
Confidence 334445565666666666544431 3467889999999999999999999876 333 33432
Q ss_pred CcCHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCccc-------------hhhhcCCCCCCCC
Q 037851 215 TPDIKKVQGELADQLGMQFDEESDVPGRARKLYARLQKENKILIILDNIWEDLD-------------LEKVGVPSGNDCR 281 (1053)
Q Consensus 215 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~-------------~~~l~~~~~~~~~ 281 (1053)
. +++...-+ +.+..+..+++.-++--+.+|+||.++.... +..+...+.....
T Consensus 502 p--------EL~sk~vG------eSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~ 567 (693)
T KOG0730|consen 502 P--------ELFSKYVG------ESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEA 567 (693)
T ss_pred H--------HHHHHhcC------chHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccc
Confidence 2 11111111 1113334444444445668888888764311 1222222222222
Q ss_pred C--cEEEEEecChHHHH-h---hC--CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCc
Q 037851 282 G--CKVLLTARDRHVLE-S---IG--SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLP 345 (1053)
Q Consensus 282 g--s~iivTtR~~~v~~-~---~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlP 345 (1053)
. --||-.|--++..+ . -| +..+.+..-+.+.-.++|+.++..-.-.++ -...+|+++..|.-
T Consensus 568 ~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~--vdl~~La~~T~g~S 637 (693)
T KOG0730|consen 568 LKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSED--VDLEELAQATEGYS 637 (693)
T ss_pred cCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCcc--ccHHHHHHHhccCC
Confidence 2 23333333333222 1 22 566777777777788999998863222221 11345555555543
No 241
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.31 E-value=0.0099 Score=62.77 Aligned_cols=54 Identities=24% Similarity=0.397 Sum_probs=40.4
Q ss_pred cccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHH-hhhcCCCCeE
Q 037851 154 AFESRMSTLKSLQNALLDPDVTITGVYGMGGLGKTTLVKEVARQ-VKKDKHFDEV 207 (1053)
Q Consensus 154 ~~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~-~~~~~~f~~~ 207 (1053)
++-+|..+..--+++|.++++..|.+.|.+|.|||-||-+..=. .-+++.|..+
T Consensus 225 Gi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~Ki 279 (436)
T COG1875 225 GIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKI 279 (436)
T ss_pred ccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceE
Confidence 44567777777788999999999999999999999988776432 2334555543
No 242
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.30 E-value=0.024 Score=62.90 Aligned_cols=136 Identities=18% Similarity=0.189 Sum_probs=78.7
Q ss_pred ccchHHHHHHHHHHhc-CCCeeE-EEEEcCCCCcHHHHHHHHHHHhhhcC-------------------CCCeEEEEEEc
Q 037851 155 FESRMSTLKSLQNALL-DPDVTI-TGVYGMGGLGKTTLVKEVARQVKKDK-------------------HFDEVVFAEVS 213 (1053)
Q Consensus 155 ~~gR~~~~~~l~~~l~-~~~~~v-i~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~f~~~~wv~~s 213 (1053)
++|-+....++..+.. .++.+- +.++|+.|+||||+|..+++..--.. ..+-+..+..+
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s 82 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPS 82 (325)
T ss_pred cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEeccc
Confidence 4566667777777776 344444 99999999999999999999865221 12334455555
Q ss_pred CCcC---HHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCcc--chhhhcCCCCCCCCCcEEEEE
Q 037851 214 DTPD---IKKVQGELADQLGMQFDEESDVPGRARKLYARLQKENKILIILDNIWEDL--DLEKVGVPSGNDCRGCKVLLT 288 (1053)
Q Consensus 214 ~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~iivT 288 (1053)
.... ..+.++++.+....... .++.-++++|+++... .-.++....-.....+++|++
T Consensus 83 ~~~~~~i~~~~vr~~~~~~~~~~~-----------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~ 145 (325)
T COG0470 83 DLRKIDIIVEQVRELAEFLSESPL-----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILI 145 (325)
T ss_pred ccCCCcchHHHHHHHHHHhccCCC-----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEE
Confidence 4444 23344444443322111 2567889999998652 233333333333456778877
Q ss_pred ecCh-HHHHhhC--CCcccccC
Q 037851 289 ARDR-HVLESIG--SKTLRIDV 307 (1053)
Q Consensus 289 tR~~-~v~~~~~--~~~~~l~~ 307 (1053)
|... .+..... ...+++.+
T Consensus 146 ~n~~~~il~tI~SRc~~i~f~~ 167 (325)
T COG0470 146 TNDPSKILPTIRSRCQRIRFKP 167 (325)
T ss_pred cCChhhccchhhhcceeeecCC
Confidence 7733 2322222 34555555
No 243
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.29 E-value=0.23 Score=55.78 Aligned_cols=38 Identities=21% Similarity=0.300 Sum_probs=28.9
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEE
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEV 212 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 212 (1053)
...+|.++|..|+||||+|..++...+.++ + .++.|+.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G-~-kV~lV~~ 136 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKG-F-KPCLVCA 136 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCC-C-CEEEEcC
Confidence 467999999999999999999998776432 2 3444544
No 244
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.28 E-value=0.0059 Score=66.08 Aligned_cols=47 Identities=21% Similarity=0.268 Sum_probs=40.6
Q ss_pred cccchHHHHHHHHHHhc------CCCeeEEEEEcCCCCcHHHHHHHHHHHhhh
Q 037851 154 AFESRMSTLKSLQNALL------DPDVTITGVYGMGGLGKTTLVKEVARQVKK 200 (1053)
Q Consensus 154 ~~~gR~~~~~~l~~~l~------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 200 (1053)
.++|-++.++++++++. ..+.+++.++|++|+||||||+.+++....
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 58899999999999886 224589999999999999999999998764
No 245
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.27 E-value=0.018 Score=60.43 Aligned_cols=57 Identities=25% Similarity=0.372 Sum_probs=40.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCC----CCeEEEEEEcCCcCHHHHHHHHHHHhC
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKKDKH----FDEVVFAEVSDTPDIKKVQGELADQLG 230 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----f~~~~wv~~s~~~~~~~~~~~i~~~l~ 230 (1053)
...++.|+|.+|+|||++|.+++........ ...++|++....++...+ .++++..+
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl-~~~~~~~~ 78 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL-VQIAERFG 78 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH-HHHHHHhc
Confidence 3479999999999999999999865432221 357899998887765544 34444443
No 246
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.26 E-value=0.026 Score=64.30 Aligned_cols=187 Identities=13% Similarity=0.146 Sum_probs=108.6
Q ss_pred cccccchHHHHHHHHHHhcCCCe-eEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhC
Q 037851 152 YEAFESRMSTLKSLQNALLDPDV-TITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLG 230 (1053)
Q Consensus 152 ~~~~~gR~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 230 (1053)
..+++|-+.....|...+..++. .--...|+-|+||||+||-++...-=.+. ....+++.-...++|...-.
T Consensus 15 F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~-------~~~ePC~~C~~Ck~I~~g~~ 87 (515)
T COG2812 15 FDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENG-------PTAEPCGKCISCKEINEGSL 87 (515)
T ss_pred HHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCC-------CCCCcchhhhhhHhhhcCCc
Confidence 45678998888888888875543 34557899999999999999987531110 11122222223333332200
Q ss_pred CCC---CCCC-ChhHHHHHHHHHHh----cCCcEEEEEcCCCCc--cchhhhcCCCCCCCCCcEEEEEecCh-HHHHh-h
Q 037851 231 MQF---DEES-DVPGRARKLYARLQ----KENKILIILDNIWED--LDLEKVGVPSGNDCRGCKVLLTARDR-HVLES-I 298 (1053)
Q Consensus 231 ~~~---~~~~-~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtR~~-~v~~~-~ 298 (1053)
.+. +..+ ...+..+.+.+... .++.=+.|+|+|... ..|.++...+-.--.....|+.|.+. .+... .
T Consensus 88 ~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIl 167 (515)
T COG2812 88 IDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTIL 167 (515)
T ss_pred ccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhhh
Confidence 000 0000 01123445555543 356668899999754 56777665554333455555555544 33332 2
Q ss_pred C-CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCch
Q 037851 299 G-SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPI 346 (1053)
Q Consensus 299 ~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPl 346 (1053)
. ...|.++.++.++-...+...+....-.. .++...-|++..+|...
T Consensus 168 SRcq~f~fkri~~~~I~~~L~~i~~~E~I~~-e~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 168 SRCQRFDFKRLDLEEIAKHLAAILDKEGINI-EEDALSLIARAAEGSLR 215 (515)
T ss_pred hccccccccCCCHHHHHHHHHHHHHhcCCcc-CHHHHHHHHHHcCCChh
Confidence 2 67899999999999999988875322221 23456667777777543
No 247
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.24 E-value=0.0022 Score=65.28 Aligned_cols=58 Identities=29% Similarity=0.390 Sum_probs=24.0
Q ss_pred CCceeEEeecCcccc---CCCcccccCccCcEEEcCCcccCC-cccc-CCCCCCcEEEccCCC
Q 037851 527 TPKLKVLDFTRMRLL---SLPSSIHLLTDLRTLCLDGCELED-IRVI-GELKDLEILSLQGSK 584 (1053)
Q Consensus 527 ~~~Lr~L~l~~~~~~---~lp~~i~~l~~Lr~L~L~~~~~~~-~~~i-~~l~~L~~L~l~~~~ 584 (1053)
...++.||+.+|.+. ++-..+.++++|++|+++.|.+.. +... -.+.+|++|-|.++.
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~ 132 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTG 132 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCC
Confidence 344444444444443 122223344444444444444433 2222 233444444444443
No 248
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.24 E-value=0.017 Score=62.21 Aligned_cols=85 Identities=20% Similarity=0.240 Sum_probs=55.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhCCCCC-----CCCChhHHHHHHH
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLGMQFD-----EESDVPGRARKLY 247 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 247 (1053)
..+++-|+|++|+||||||.+++...... -..++|++..+.++.. .+++++.+.+ .....++....+.
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~--g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~ 126 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAE 126 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 45799999999999999999988776532 3457899887766542 4555554321 1122223333333
Q ss_pred HHHhcCCcEEEEEcCCC
Q 037851 248 ARLQKENKILIILDNIW 264 (1053)
Q Consensus 248 ~~l~~~~~~LlvlDdv~ 264 (1053)
..+..+..-+||+|.|-
T Consensus 127 ~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 127 TLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHhhccCCcEEEEcchh
Confidence 33434567799999985
No 249
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.23 E-value=0.0098 Score=59.15 Aligned_cols=36 Identities=25% Similarity=0.500 Sum_probs=29.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEE
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFA 210 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv 210 (1053)
...+|.+.|+.|+||||+|+.+++... ..+..++++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~--~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLK--LKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH--HcCCcEEEE
Confidence 456999999999999999999999886 345555555
No 250
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.21 E-value=0.024 Score=62.37 Aligned_cols=89 Identities=19% Similarity=0.180 Sum_probs=55.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCC-cCHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhc
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDT-PDIKKVQGELADQLGMQFDEESDVPGRARKLYARLQK 252 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 252 (1053)
..++.++|+.|+||||++.+++.....+.....+.+++.... ....+-++...+.++............ ......+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l-~~~l~~l~- 214 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDL-QLALAELR- 214 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccH-HHHHHHhc-
Confidence 469999999999999999999988653222245666664432 345566666677777654433322122 23334442
Q ss_pred CCcEEEEEcCCCC
Q 037851 253 ENKILIILDNIWE 265 (1053)
Q Consensus 253 ~~~~LlvlDdv~~ 265 (1053)
++-+|++|..-.
T Consensus 215 -~~DlVLIDTaG~ 226 (374)
T PRK14722 215 -NKHMVLIDTIGM 226 (374)
T ss_pred -CCCEEEEcCCCC
Confidence 345667999853
No 251
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.21 E-value=0.003 Score=63.79 Aligned_cols=78 Identities=29% Similarity=0.452 Sum_probs=34.4
Q ss_pred cCcEEEcCCcccCCccccCCCCCCcEEEccCC--CCc-ccchhhhccCCCCeeeccCccccc---ccCcchhcCCccCce
Q 037851 552 DLRTLCLDGCELEDIRVIGELKDLEILSLQGS--KIE-QLPREIGQLTQLKLLDLSNCSKLK---VIAPNVLSNLSQLEE 625 (1053)
Q Consensus 552 ~Lr~L~L~~~~~~~~~~i~~l~~L~~L~l~~~--~l~-~lp~~i~~L~~L~~L~l~~~~~l~---~~~~~~l~~l~~L~~ 625 (1053)
.|+.|++.++.++....+-.|++|++|.++.| .+. .++....++++|++|++++| +++ .+.| +..+.+|..
T Consensus 44 ~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~p--l~~l~nL~~ 120 (260)
T KOG2739|consen 44 ELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRP--LKELENLKS 120 (260)
T ss_pred chhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccch--hhhhcchhh
Confidence 34444444444444444444455555555554 222 34433444455555555552 222 1212 334445555
Q ss_pred eeccccc
Q 037851 626 LYMANCS 632 (1053)
Q Consensus 626 L~l~~~~ 632 (1053)
|++.+|.
T Consensus 121 Ldl~n~~ 127 (260)
T KOG2739|consen 121 LDLFNCS 127 (260)
T ss_pred hhcccCC
Confidence 5555544
No 252
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.20 E-value=0.27 Score=54.47 Aligned_cols=43 Identities=26% Similarity=0.471 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhcC---CCeeEEEEEcCCCCcHHHHHHHHHHHhhhc
Q 037851 159 MSTLKSLQNALLD---PDVTITGVYGMGGLGKTTLVKEVARQVKKD 201 (1053)
Q Consensus 159 ~~~~~~l~~~l~~---~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 201 (1053)
+.-.+.+.+.+.+ ....+|+|.|.=|+||||+.+.+.+.....
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 3445666666663 467899999999999999999999998754
No 253
>PRK06696 uridine kinase; Validated
Probab=96.19 E-value=0.0074 Score=62.52 Aligned_cols=44 Identities=32% Similarity=0.422 Sum_probs=36.8
Q ss_pred chHHHHHHHHHHhc---CCCeeEEEEEcCCCCcHHHHHHHHHHHhhh
Q 037851 157 SRMSTLKSLQNALL---DPDVTITGVYGMGGLGKTTLVKEVARQVKK 200 (1053)
Q Consensus 157 gR~~~~~~l~~~l~---~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 200 (1053)
.|.+.+++|.+.+. .++..+|+|.|.+|+||||+|+.+++....
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKK 48 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 46777888887774 456789999999999999999999998763
No 254
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.18 E-value=0.036 Score=57.58 Aligned_cols=89 Identities=17% Similarity=0.265 Sum_probs=52.8
Q ss_pred HHHHHHHHhcC--CCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhCCCCCCCCC
Q 037851 161 TLKSLQNALLD--PDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLGMQFDEESD 238 (1053)
Q Consensus 161 ~~~~l~~~l~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~ 238 (1053)
.+..+.++..+ .....+.++|.+|+|||+||..+++.....+ ..+++++ ..++...+-..... ..
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g--~~v~~it------~~~l~~~l~~~~~~---~~-- 150 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRG--KSVLIIT------VADIMSAMKDTFSN---SE-- 150 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcC--CeEEEEE------HHHHHHHHHHHHhh---cc--
Confidence 34444444431 2235789999999999999999999876432 3456664 34455544443321 01
Q ss_pred hhHHHHHHHHHHhcCCcEEEEEcCCCCc
Q 037851 239 VPGRARKLYARLQKENKILIILDNIWED 266 (1053)
Q Consensus 239 ~~~~~~~l~~~l~~~~~~LlvlDdv~~~ 266 (1053)
.....+.+.+. +.=+||+||+...
T Consensus 151 --~~~~~~l~~l~--~~dlLvIDDig~~ 174 (244)
T PRK07952 151 --TSEEQLLNDLS--NVDLLVIDEIGVQ 174 (244)
T ss_pred --ccHHHHHHHhc--cCCEEEEeCCCCC
Confidence 11223445553 4558889999654
No 255
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=96.16 E-value=0.051 Score=51.18 Aligned_cols=112 Identities=12% Similarity=0.096 Sum_probs=70.5
Q ss_pred hhHHHH-HHHHHHhhhhhhhhhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Q 037851 2 VDALVT-VALEVAKCLFPPIGRQLSYVRNYKANLENLKKETEKLTDASDSMQKKVDDARRNGEEINKRVESWLISADKIV 80 (1053)
Q Consensus 2 a~~~~~-~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~l~~i~~~l~~a~~~~~~~~~~~~~wl~~~~~~~ 80 (1053)
||+++| |+|++++.+...+.+.......++..++.+...++.+. ..+++.+.-+.+.+..-+.-++++.+..
T Consensus 3 ~eL~~gaalG~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~-------P~i~eI~~~~~eld~~~~ee~e~L~~~L 75 (147)
T PF05659_consen 3 AELVGGAALGAVFGELLKAVIDASKKSLSFKSILKRLESTLESII-------PIIKEIDKLNVELDRPRQEEIERLKELL 75 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh-------hHHHHHHHHhhhcCCchhHHHHHHHHHH
Confidence 566665 55666666666666555555555555555555554444 4555444433344444467778888889
Q ss_pred HHHhhhhhHHHhhcccccccccCCchhhhhhHHHHHHHHHHHHHHHH
Q 037851 81 AEADTLTGEEENANKKCFKGLCPNLKKRYQLSEKAAIKGKSIAEIKK 127 (1053)
Q Consensus 81 ~~~ed~ld~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~i~~ 127 (1053)
.+++++++.+..- ..+++...++.+++|+++.+.+....+
T Consensus 76 ~~g~~LV~k~sk~-------~r~n~~kk~~y~~Ki~~le~~l~~f~~ 115 (147)
T PF05659_consen 76 EKGKELVEKCSKV-------RRWNLYKKPRYARKIEELEESLRRFIQ 115 (147)
T ss_pred HHHHHHHHHhccc-------cHHHHHhhHhHHHHHHHHHHHHHHHhc
Confidence 9999988765321 234566777888999888888876654
No 256
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=0.034 Score=63.78 Aligned_cols=151 Identities=15% Similarity=0.049 Sum_probs=84.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCc--CHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHh
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTP--DIKKVQGELADQLGMQFDEESDVPGRARKLYARLQ 251 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 251 (1053)
..-|.|.|..|+|||+||+++++... +...-.+.+|+++.-. ....+++.+..- +-+.+
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~v-----------------fse~~- 491 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFLNNV-----------------FSEAL- 491 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHHHHH-----------------HHHHH-
Confidence 35788999999999999999999987 4556667778776532 244444333221 12223
Q ss_pred cCCcEEEEEcCCCCc--------cchh-----------hhcCCCCCCCCCcEEEEEecChHHHHh----hC--CCccccc
Q 037851 252 KENKILIILDNIWED--------LDLE-----------KVGVPSGNDCRGCKVLLTARDRHVLES----IG--SKTLRID 306 (1053)
Q Consensus 252 ~~~~~LlvlDdv~~~--------~~~~-----------~l~~~~~~~~~gs~iivTtR~~~v~~~----~~--~~~~~l~ 306 (1053)
...+-+|||||++-. .+|. .+...+...+..-++|.|.....-... .+ ..++.+.
T Consensus 492 ~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ 571 (952)
T KOG0735|consen 492 WYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALP 571 (952)
T ss_pred hhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecC
Confidence 367899999998532 1221 111112222222244555544322211 11 3466888
Q ss_pred CCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCC
Q 037851 307 VLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGL 344 (1053)
Q Consensus 307 ~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~Gl 344 (1053)
.+...+-.++++......... ...+...-+..+|+|.
T Consensus 572 ap~~~~R~~IL~~~~s~~~~~-~~~~dLd~ls~~TEGy 608 (952)
T KOG0735|consen 572 APAVTRRKEILTTIFSKNLSD-ITMDDLDFLSVKTEGY 608 (952)
T ss_pred CcchhHHHHHHHHHHHhhhhh-hhhHHHHHHHHhcCCc
Confidence 888888777776655322211 1122233377777764
No 257
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.11 E-value=0.006 Score=60.29 Aligned_cols=75 Identities=25% Similarity=0.379 Sum_probs=45.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhc
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLGMQFDEESDVPGRARKLYARLQK 252 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 252 (1053)
+..-+.++|..|+|||.||..+.+....++ + .+.|+++ .+++..+-. ... ... ...+.+.+.
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g-~-~v~f~~~------~~L~~~l~~----~~~-~~~----~~~~~~~l~- 107 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKG-Y-SVLFITA------SDLLDELKQ----SRS-DGS----YEELLKRLK- 107 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT----EEEEEH------HHHHHHHHC----CHC-CTT----HCHHHHHHH-
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCC-c-ceeEeec------Cceeccccc----ccc-ccc----hhhhcCccc-
Confidence 346799999999999999999999876432 2 3556643 344444432 111 111 223445553
Q ss_pred CCcEEEEEcCCCCc
Q 037851 253 ENKILIILDNIWED 266 (1053)
Q Consensus 253 ~~~~LlvlDdv~~~ 266 (1053)
+-=||||||+...
T Consensus 108 -~~dlLilDDlG~~ 120 (178)
T PF01695_consen 108 -RVDLLILDDLGYE 120 (178)
T ss_dssp -TSSCEEEETCTSS
T ss_pred -cccEeccccccee
Confidence 4568889999654
No 258
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.10 E-value=0.02 Score=61.65 Aligned_cols=85 Identities=22% Similarity=0.263 Sum_probs=54.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhCCCCC-----CCCChhHHHHHHH
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLGMQFD-----EESDVPGRARKLY 247 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 247 (1053)
..+++-|+|++|+||||||.+++..... .-..++|++....++.. .+++++.+.+ .....++....+.
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~~~--~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~ 126 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEAQK--LGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIAD 126 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHH
Confidence 3579999999999999999998877653 23568899887776643 4455554321 1112223333333
Q ss_pred HHHhcCCcEEEEEcCCC
Q 037851 248 ARLQKENKILIILDNIW 264 (1053)
Q Consensus 248 ~~l~~~~~~LlvlDdv~ 264 (1053)
..+..+..-+||+|.|-
T Consensus 127 ~li~s~~~~lIVIDSva 143 (325)
T cd00983 127 SLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHhccCCCEEEEcchH
Confidence 33334567789999974
No 259
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.10 E-value=0.034 Score=57.92 Aligned_cols=54 Identities=24% Similarity=0.287 Sum_probs=38.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhcC----CCCeEEEEEEcCCcCHHHHHHHHHHH
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVKKDK----HFDEVVFAEVSDTPDIKKVQGELADQ 228 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~~s~~~~~~~~~~~i~~~ 228 (1053)
..++.|+|.+|+|||++|.+++....... .=..++|++....++...+. .+.+.
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~ 76 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVR 76 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHH-HHHHH
Confidence 57999999999999999999987654221 11567899988777665543 34443
No 260
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.08 E-value=0.11 Score=51.76 Aligned_cols=145 Identities=18% Similarity=0.261 Sum_probs=84.5
Q ss_pred cchHHHHHHHHHHhc-------------CCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHH
Q 037851 156 ESRMSTLKSLQNALL-------------DPDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQ 222 (1053)
Q Consensus 156 ~gR~~~~~~l~~~l~-------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 222 (1053)
-|-++.+++|.+.+. -.+++-+.++|++|.|||-||++||+.. .+.|+.||.. ++.
T Consensus 150 GgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht-------~c~firvsgs----elv 218 (404)
T KOG0728|consen 150 GGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT-------DCTFIRVSGS----ELV 218 (404)
T ss_pred ccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc-------ceEEEEechH----HHH
Confidence 344666666655443 1356788999999999999999998754 3556777763 122
Q ss_pred HHHHHHhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCccc------------h----hhhcCCCCC--CCCCcE
Q 037851 223 GELADQLGMQFDEESDVPGRARKLYARLQKENKILIILDNIWEDLD------------L----EKVGVPSGN--DCRGCK 284 (1053)
Q Consensus 223 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~------------~----~~l~~~~~~--~~~gs~ 284 (1053)
+..+ |.. ...+.+++---++.-+.+|+.|.+++... . -++...+.. ..+.-+
T Consensus 219 qk~i---geg-------srmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknik 288 (404)
T KOG0728|consen 219 QKYI---GEG-------SRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIK 288 (404)
T ss_pred HHHh---hhh-------HHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceE
Confidence 1111 100 02233343333356788888898864310 0 111122211 234568
Q ss_pred EEEEecChHHHHh----hC--CCcccccCCCHHHHHHHHHHHh
Q 037851 285 VLLTARDRHVLES----IG--SKTLRIDVLNDEEAWTLFKKMT 321 (1053)
Q Consensus 285 iivTtR~~~v~~~----~~--~~~~~l~~L~~~~~~~lf~~~~ 321 (1053)
||+.|..-++.+. -| +..++..+-+++.-.++++-+.
T Consensus 289 vimatnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 289 VIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred EEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 8887765555442 23 6678888888877777776554
No 261
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.05 E-value=0.019 Score=69.64 Aligned_cols=102 Identities=16% Similarity=0.190 Sum_probs=58.6
Q ss_pred cccchHHHHHHHHHHhc-------CC--CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHH
Q 037851 154 AFESRMSTLKSLQNALL-------DP--DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGE 224 (1053)
Q Consensus 154 ~~~gR~~~~~~l~~~l~-------~~--~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 224 (1053)
.++|.++.++.+.+.+. ++ ....+.++|+.|+|||++|+.++.... . ..+.++.++..... .
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~--~---~~i~id~se~~~~~----~ 529 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG--I---ELLRFDMSEYMERH----T 529 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC--C---CcEEeechhhcccc----c
Confidence 46788888888877765 11 135788999999999999999988763 2 23344544432211 1
Q ss_pred HHHHhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCc
Q 037851 225 LADQLGMQFDEESDVPGRARKLYARLQKENKILIILDNIWED 266 (1053)
Q Consensus 225 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~ 266 (1053)
+.+-+|.+..... . .....+.+.+.+...-+|+||+++..
T Consensus 530 ~~~LiG~~~gyvg-~-~~~g~L~~~v~~~p~sVlllDEieka 569 (758)
T PRK11034 530 VSRLIGAPPGYVG-F-DQGGLLTDAVIKHPHAVLLLDEIEKA 569 (758)
T ss_pred HHHHcCCCCCccc-c-cccchHHHHHHhCCCcEEEeccHhhh
Confidence 2222232211110 0 11122334444345579999999765
No 262
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.05 E-value=0.033 Score=59.75 Aligned_cols=88 Identities=23% Similarity=0.286 Sum_probs=50.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCc-CHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHh
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTP-DIKKVQGELADQLGMQFDEESDVPGRARKLYARLQ 251 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 251 (1053)
+.+++.|+|++|+||||++..++.....+..-..+..++..... ...+.+....+.++.......+. .......+.+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~-~~l~~~l~~~~ 271 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDP-KELRKALDRLR 271 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCH-HHHHHHHHHcc
Confidence 45799999999999999999999887643111245666654322 22333444455555443322232 22333344442
Q ss_pred cCCcEEEEEcCC
Q 037851 252 KENKILIILDNI 263 (1053)
Q Consensus 252 ~~~~~LlvlDdv 263 (1053)
..=+|++|..
T Consensus 272 --~~d~vliDt~ 281 (282)
T TIGR03499 272 --DKDLILIDTA 281 (282)
T ss_pred --CCCEEEEeCC
Confidence 2347777754
No 263
>PRK09354 recA recombinase A; Provisional
Probab=96.03 E-value=0.025 Score=61.45 Aligned_cols=85 Identities=21% Similarity=0.247 Sum_probs=56.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhCCCCC-----CCCChhHHHHHHH
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLGMQFD-----EESDVPGRARKLY 247 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 247 (1053)
..+++-|+|++|+||||||.+++..... .-..++|++....++. ..+++++.+.+ .....++....+.
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~~--~G~~~~yId~E~s~~~-----~~a~~lGvdld~lli~qp~~~Eq~l~i~~ 131 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQK--AGGTAAFIDAEHALDP-----VYAKKLGVDIDNLLVSQPDTGEQALEIAD 131 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCcEEEECCccchHH-----HHHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 3579999999999999999998877653 2356889998887775 34556655321 1112223333333
Q ss_pred HHHhcCCcEEEEEcCCC
Q 037851 248 ARLQKENKILIILDNIW 264 (1053)
Q Consensus 248 ~~l~~~~~~LlvlDdv~ 264 (1053)
..+..+..-+||+|.|-
T Consensus 132 ~li~s~~~~lIVIDSva 148 (349)
T PRK09354 132 TLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHhhcCCCCEEEEeChh
Confidence 33444567799999985
No 264
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.02 E-value=0.033 Score=54.49 Aligned_cols=40 Identities=28% Similarity=0.462 Sum_probs=31.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcC
Q 037851 176 ITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPD 217 (1053)
Q Consensus 176 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 217 (1053)
++.|+|.+|+||||+|+.++..... .-..++|++......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~--~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIAT--KGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHh--cCCEEEEEECCcchH
Confidence 4689999999999999999988763 335677887765543
No 265
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=95.96 E-value=0.053 Score=65.43 Aligned_cols=147 Identities=20% Similarity=0.260 Sum_probs=81.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhcCC
Q 037851 175 TITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLGMQFDEESDVPGRARKLYARLQKEN 254 (1053)
Q Consensus 175 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 254 (1053)
+-|.++|++|.|||++|+.++..... .| +.++.+. +.. +. .+. . ......+........
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~--~f---~~is~~~------~~~-~~--~g~------~-~~~~~~~f~~a~~~~ 244 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKV--PF---FTISGSD------FVE-MF--VGV------G-ASRVRDMFEQAKKAA 244 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCC--CE---EEEehHH------hHH-hh--hcc------c-HHHHHHHHHHHHhcC
Confidence 45899999999999999999887652 22 2222221 111 00 000 0 122233333333467
Q ss_pred cEEEEEcCCCCcc------------c----hhhhcCCCCC--CCCCcEEEEEecChHHHHh----hC--CCcccccCCCH
Q 037851 255 KILIILDNIWEDL------------D----LEKVGVPSGN--DCRGCKVLLTARDRHVLES----IG--SKTLRIDVLND 310 (1053)
Q Consensus 255 ~~LlvlDdv~~~~------------~----~~~l~~~~~~--~~~gs~iivTtR~~~v~~~----~~--~~~~~l~~L~~ 310 (1053)
+.+|++|+++... . ...+...+.. ...+.-||.||...+.... .+ ...+.+...+.
T Consensus 245 P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~ 324 (644)
T PRK10733 245 PCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDV 324 (644)
T ss_pred CcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCH
Confidence 8899999986531 0 1112111111 2234556668877654432 12 56778888888
Q ss_pred HHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCC
Q 037851 311 EEAWTLFKKMTGDCAEKGELKSIATDVAKECGGL 344 (1053)
Q Consensus 311 ~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~Gl 344 (1053)
++-.++++.+.......++. ....+++.+.|.
T Consensus 325 ~~R~~Il~~~~~~~~l~~~~--d~~~la~~t~G~ 356 (644)
T PRK10733 325 RGREQILKVHMRRVPLAPDI--DAAIIARGTPGF 356 (644)
T ss_pred HHHHHHHHHHhhcCCCCCcC--CHHHHHhhCCCC
Confidence 88889988887532211111 133466666664
No 266
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.96 E-value=0.01 Score=55.20 Aligned_cols=28 Identities=32% Similarity=0.456 Sum_probs=24.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhcC
Q 037851 175 TITGVYGMGGLGKTTLVKEVARQVKKDK 202 (1053)
Q Consensus 175 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~ 202 (1053)
--|.|.|++|+||||+++.+++..+.++
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g 33 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKG 33 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcC
Confidence 4689999999999999999999988653
No 267
>PRK04296 thymidine kinase; Provisional
Probab=95.95 E-value=0.012 Score=59.21 Aligned_cols=111 Identities=15% Similarity=0.117 Sum_probs=61.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhCCCCCC--CCChhHHHHHHHHHHhc
Q 037851 175 TITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLGMQFDE--ESDVPGRARKLYARLQK 252 (1053)
Q Consensus 175 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~l~~ 252 (1053)
.++.|+|..|.||||+|..++.+.... -..++++. ..++.+.....++++++..... .....+....+.+ ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~--g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~--~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEER--GMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE--EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHc--CCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh--hC
Confidence 478899999999999999999887633 23333342 1112222233456666543322 1122222233332 22
Q ss_pred CCcEEEEEcCCCCc--cchhhhcCCCCCCCCCcEEEEEecChH
Q 037851 253 ENKILIILDNIWED--LDLEKVGVPSGNDCRGCKVLLTARDRH 293 (1053)
Q Consensus 253 ~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtR~~~ 293 (1053)
++.-+||+|.+.-. ++..++...+ ...|..||+|.++.+
T Consensus 77 ~~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 77 EKIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTD 117 (190)
T ss_pred CCCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCcc
Confidence 45568999999542 2222222221 235778999999854
No 268
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.95 E-value=0.068 Score=58.46 Aligned_cols=90 Identities=18% Similarity=0.256 Sum_probs=49.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCc-CHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHh
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTP-DIKKVQGELADQLGMQFDEESDVPGRARKLYARLQ 251 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 251 (1053)
+.++|+++|++|+||||++..++.....++ ..+.+++..... ...+-++...+.++.+.....+.... ....+.+.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~G--kkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L-~~aL~~lk 316 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKK--KTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAM-TRALTYFK 316 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcC--CcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHH-HHHHHHHH
Confidence 457999999999999999999998776332 234455554321 22233344444555443322233222 23333333
Q ss_pred c-CCcEEEEEcCCCC
Q 037851 252 K-ENKILIILDNIWE 265 (1053)
Q Consensus 252 ~-~~~~LlvlDdv~~ 265 (1053)
. .+.=+|++|-.-.
T Consensus 317 ~~~~~DvVLIDTaGR 331 (436)
T PRK11889 317 EEARVDYILIDTAGK 331 (436)
T ss_pred hccCCCEEEEeCccc
Confidence 2 1234677787643
No 269
>PRK10867 signal recognition particle protein; Provisional
Probab=95.94 E-value=0.39 Score=54.33 Aligned_cols=29 Identities=34% Similarity=0.471 Sum_probs=24.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhc
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKKD 201 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 201 (1053)
...+|.++|.+|+||||.|..++.....+
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 46899999999999999999998877643
No 270
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=95.93 E-value=0.055 Score=56.69 Aligned_cols=93 Identities=22% Similarity=0.302 Sum_probs=58.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCc-CHHHHHHHHHHHhCC-------CCCCCCChh----
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTP-DIKKVQGELADQLGM-------QFDEESDVP---- 240 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~-------~~~~~~~~~---- 240 (1053)
+..-++|+|.+|+||||||+.+++..+.+ +-+.++++-+.+.. .+.++..++...-.. ...+++...
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i~~~-~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~ 146 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNIAKA-HGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARV 146 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 44688999999999999999999988742 23556777777654 456666666543111 111111110
Q ss_pred -HHHHHHHHHHh-c-CCcEEEEEcCCCCc
Q 037851 241 -GRARKLYARLQ-K-ENKILIILDNIWED 266 (1053)
Q Consensus 241 -~~~~~l~~~l~-~-~~~~LlvlDdv~~~ 266 (1053)
...-.+-+++. + ++.+|+++||+-..
T Consensus 147 ~~~a~~~AEyfr~~~g~~Vl~~~Dsltr~ 175 (274)
T cd01133 147 ALTGLTMAEYFRDEEGQDVLLFIDNIFRF 175 (274)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeChhHH
Confidence 11223445553 3 89999999998543
No 271
>PTZ00494 tuzin-like protein; Provisional
Probab=95.92 E-value=3.6 Score=45.49 Aligned_cols=164 Identities=15% Similarity=0.157 Sum_probs=94.1
Q ss_pred CCCcccccchHHHHHHHHHHhcC---CCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHH
Q 037851 149 GKGYEAFESRMSTLKSLQNALLD---PDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGEL 225 (1053)
Q Consensus 149 ~~~~~~~~gR~~~~~~l~~~l~~---~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 225 (1053)
......++.|+.+-..+.+.|.+ ..++++.+.|.-|.||++|.+....+.. -..++|++....| -++.|
T Consensus 367 ~a~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE~-----~paV~VDVRg~ED---tLrsV 438 (664)
T PTZ00494 367 AAAEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVEG-----VALVHVDVGGTED---TLRSV 438 (664)
T ss_pred ccccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHcC-----CCeEEEEecCCcc---hHHHH
Confidence 34456788998887777777753 3579999999999999999998887654 2457788876543 56778
Q ss_pred HHHhCCCCCCC-CChhHHHHHHHHHH---hcCCcEEEEE--cCCCCcc-chhhhcCCCCCCCCCcEEEEEecChHHHHh-
Q 037851 226 ADQLGMQFDEE-SDVPGRARKLYARL---QKENKILIIL--DNIWEDL-DLEKVGVPSGNDCRGCKVLLTARDRHVLES- 297 (1053)
Q Consensus 226 ~~~l~~~~~~~-~~~~~~~~~l~~~l---~~~~~~Llvl--Ddv~~~~-~~~~l~~~~~~~~~gs~iivTtR~~~v~~~- 297 (1053)
.+.++.+.-+. .|.-+-+.+-...- ..++.-+||+ -+-.+.. ...+. ..+.....-|.|++----+.+...
T Consensus 439 VKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~-vaLacDrRlCHvv~EVplESLT~~n 517 (664)
T PTZ00494 439 VRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEV-VSLVSDCQACHIVLAVPMKALTPLN 517 (664)
T ss_pred HHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHH-HHHHccchhheeeeechHhhhchhh
Confidence 88888754322 22211111111111 1355556665 2221111 11110 112222334566654443332221
Q ss_pred --hC-CCcccccCCCHHHHHHHHHHHh
Q 037851 298 --IG-SKTLRIDVLNDEEAWTLFKKMT 321 (1053)
Q Consensus 298 --~~-~~~~~l~~L~~~~~~~lf~~~~ 321 (1053)
.. -.-|-+.+++.++|.+..+...
T Consensus 518 ~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 518 VSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred ccCccceeEecCCcCHHHHHHHHhccc
Confidence 11 3467888999999988776554
No 272
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.90 E-value=0.12 Score=56.58 Aligned_cols=87 Identities=13% Similarity=0.079 Sum_probs=47.3
Q ss_pred CCcEEEEEcCCCCcc--chhhhcCCCCCCCCCcEEEEEecChH-HHHhhC--CCcccccCCCHHHHHHHHHHHhCCCCCC
Q 037851 253 ENKILIILDNIWEDL--DLEKVGVPSGNDCRGCKVLLTARDRH-VLESIG--SKTLRIDVLNDEEAWTLFKKMTGDCAEK 327 (1053)
Q Consensus 253 ~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~iivTtR~~~-v~~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 327 (1053)
+++-++|+|++...+ .-..+...+.....+..+|++|.+.+ +..... ...+.+.+++.+++.+.+.+.. ..
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~~---~~- 187 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRERG---VA- 187 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhcC---CC-
Confidence 344455668776542 22222221111123466777777654 433332 5788999999999998886542 11
Q ss_pred ccchHHHHHHHHHhCCCchHH
Q 037851 328 GELKSIATDVAKECGGLPIAI 348 (1053)
Q Consensus 328 ~~~~~~~~~i~~~~~GlPlai 348 (1053)
. . . ..+..++|.|+.+
T Consensus 188 ~--~--~-~~l~~~~g~p~~~ 203 (325)
T PRK08699 188 E--P--E-ERLAFHSGAPLFD 203 (325)
T ss_pred c--H--H-HHHHHhCCChhhh
Confidence 1 1 1 1235688988543
No 273
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.87 E-value=0.033 Score=60.34 Aligned_cols=59 Identities=20% Similarity=0.342 Sum_probs=43.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhc----CCCCeEEEEEEcCCcCHHHHHHHHHHHhCCC
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKKD----KHFDEVVFAEVSDTPDIKKVQGELADQLGMQ 232 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~----~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 232 (1053)
..+++-|+|++|+|||+++.+++-..... ..=..++|++....++...+. ++++.++.+
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~d 157 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGVD 157 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCCC
Confidence 34788999999999999999877543211 112468999999888887774 567777654
No 274
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=95.85 E-value=0.031 Score=58.11 Aligned_cols=45 Identities=27% Similarity=0.406 Sum_probs=35.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHH
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKV 221 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~ 221 (1053)
..++.|+|.+|+|||++|.+++..... .-..++|++.. ..+...+
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~~--~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAAK--NGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEECC-CCCHHHH
Confidence 579999999999999999999987653 24678899887 5554443
No 275
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.84 E-value=0.18 Score=55.56 Aligned_cols=150 Identities=17% Similarity=0.205 Sum_probs=85.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhcCC
Q 037851 175 TITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLGMQFDEESDVPGRARKLYARLQKEN 254 (1053)
Q Consensus 175 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 254 (1053)
|--.++|++|.|||++..++++... ||... ...+...+-.+ .+.+... ...
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L~----ydIyd-LeLt~v~~n~d----------------------Lr~LL~~--t~~ 286 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYLN----YDIYD-LELTEVKLDSD----------------------LRHLLLA--TPN 286 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhcC----CceEE-eeeccccCcHH----------------------HHHHHHh--CCC
Confidence 4567999999999999999999875 55432 22222222111 2222222 245
Q ss_pred cEEEEEcCCCCccch--------------------hhhcCCCC--CCCCC-cE-EEEEecChHHHHh----hC--CCccc
Q 037851 255 KILIILDNIWEDLDL--------------------EKVGVPSG--NDCRG-CK-VLLTARDRHVLES----IG--SKTLR 304 (1053)
Q Consensus 255 ~~LlvlDdv~~~~~~--------------------~~l~~~~~--~~~~g-s~-iivTtR~~~v~~~----~~--~~~~~ 304 (1053)
+-+||+.|++-..+. ..+..... +..+| -| ||+||-..+-.+. -| +..+.
T Consensus 287 kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~ 366 (457)
T KOG0743|consen 287 KSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIY 366 (457)
T ss_pred CcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEE
Confidence 677777777533110 00111111 11222 25 4567776654432 22 56788
Q ss_pred ccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCchHHHHHHHHHhc
Q 037851 305 IDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPIAIVTLAKALRN 357 (1053)
Q Consensus 305 l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~L~~ 357 (1053)
|.--+.+....||+...+...++ .+..+|.+.-.|.-+.=+.++..|-.
T Consensus 367 mgyCtf~~fK~La~nYL~~~~~h----~L~~eie~l~~~~~~tPA~V~e~lm~ 415 (457)
T KOG0743|consen 367 MGYCTFEAFKTLASNYLGIEEDH----RLFDEIERLIEETEVTPAQVAEELMK 415 (457)
T ss_pred cCCCCHHHHHHHHHHhcCCCCCc----chhHHHHHHhhcCccCHHHHHHHHhh
Confidence 99999999999999998753333 34556666666666655666666533
No 276
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.82 E-value=0.0033 Score=63.17 Aligned_cols=107 Identities=19% Similarity=0.217 Sum_probs=71.6
Q ss_pred CCCceeEEeecCcccc-----CCCcccccCccCcEEEcCCcccCC------------ccccCCCCCCcEEEccCCCCc-c
Q 037851 526 GTPKLKVLDFTRMRLL-----SLPSSIHLLTDLRTLCLDGCELED------------IRVIGELKDLEILSLQGSKIE-Q 587 (1053)
Q Consensus 526 ~~~~Lr~L~l~~~~~~-----~lp~~i~~l~~Lr~L~L~~~~~~~------------~~~i~~l~~L~~L~l~~~~l~-~ 587 (1053)
-+..+..+++|+|.|. .+...|.+-.+|+..+++.-.... .+.+-+|++|+..+||.|-+. +
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 4778888999999885 345566777888888887653221 145678889999999988665 4
Q ss_pred cch----hhhccCCCCeeeccCcccccccCcchh-------------cCCccCceeecccccc
Q 037851 588 LPR----EIGQLTQLKLLDLSNCSKLKVIAPNVL-------------SNLSQLEELYMANCSI 633 (1053)
Q Consensus 588 lp~----~i~~L~~L~~L~l~~~~~l~~~~~~~l-------------~~l~~L~~L~l~~~~~ 633 (1053)
.|+ -|++-+.|.||.+++| .+.-+..+.| .+-+.|+......|.+
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRl 169 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRL 169 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchh
Confidence 443 3566678888888874 4443322222 2446677777666655
No 277
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.81 E-value=0.033 Score=60.67 Aligned_cols=37 Identities=24% Similarity=0.359 Sum_probs=29.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEc
Q 037851 175 TITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVS 213 (1053)
Q Consensus 175 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s 213 (1053)
..+.++|..|+|||.||..+++....++ ..++|+++.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g--~~V~y~t~~ 220 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRG--KSVIYRTAD 220 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCC--CeEEEEEHH
Confidence 7799999999999999999999876433 356676553
No 278
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.78 E-value=0.059 Score=56.11 Aligned_cols=30 Identities=33% Similarity=0.488 Sum_probs=26.5
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHHHhhhc
Q 037851 172 PDVTITGVYGMGGLGKTTLVKEVARQVKKD 201 (1053)
Q Consensus 172 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 201 (1053)
++..+|+|.|+.|.|||||++.+....+..
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQD 60 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 567899999999999999999999887643
No 279
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.78 E-value=0.026 Score=59.61 Aligned_cols=123 Identities=21% Similarity=0.181 Sum_probs=70.3
Q ss_pred HHHHHHhc-CCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEE---EcCCcCHHHHHHHHHHHhCCCC-----
Q 037851 163 KSLQNALL-DPDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAE---VSDTPDIKKVQGELADQLGMQF----- 233 (1053)
Q Consensus 163 ~~l~~~l~-~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~---~s~~~~~~~~~~~i~~~l~~~~----- 233 (1053)
+.++..+. ..+..-++|+|..|.|||||.+.++..... ..+.+++. +....... ++......-.
T Consensus 99 ~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~~---~~G~i~~~g~~v~~~d~~~----ei~~~~~~~~q~~~~ 171 (270)
T TIGR02858 99 DKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARILST---GISQLGLRGKKVGIVDERS----EIAGCVNGVPQHDVG 171 (270)
T ss_pred HHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccCC---CCceEEECCEEeecchhHH----HHHHHhccccccccc
Confidence 33444443 445678999999999999999999977652 22333332 21111122 3332222111
Q ss_pred ---CCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCccchhhhcCCCCCCCCCcEEEEEecChHHHH
Q 037851 234 ---DEESDVPGRARKLYARLQKENKILIILDNIWEDLDLEKVGVPSGNDCRGCKVLLTARDRHVLE 296 (1053)
Q Consensus 234 ---~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~ 296 (1053)
+..... .....+...+....+=++++|.+.....+..+...+. .|..||+||.+..+..
T Consensus 172 ~r~~v~~~~-~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 172 IRTDVLDGC-PKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDVED 233 (270)
T ss_pred ccccccccc-hHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHHHH
Confidence 111111 1233344444446788999999987766666555442 4778999999776543
No 280
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.74 E-value=0.00063 Score=68.40 Aligned_cols=100 Identities=22% Similarity=0.193 Sum_probs=71.7
Q ss_pred CCceeEEeecCccccCCCcccccCccCcEEEcCCcccCCccccCCCCCCcEEEccCCCCcccc--hhhhccCCCCeeecc
Q 037851 527 TPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDGCELEDIRVIGELKDLEILSLQGSKIEQLP--REIGQLTQLKLLDLS 604 (1053)
Q Consensus 527 ~~~Lr~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp--~~i~~L~~L~~L~l~ 604 (1053)
+.+.+.|++-||.+..+. ...+++.|++|.|+-|+|+.+..+..+++|+.|.|+.|.|..+- ..+.+|++|++|-|.
T Consensus 18 l~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred HHHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence 445666777777766442 24577888888888888888888888888888888888887664 356788889998887
Q ss_pred CcccccccCcc----hhcCCccCceee
Q 037851 605 NCSKLKVIAPN----VLSNLSQLEELY 627 (1053)
Q Consensus 605 ~~~~l~~~~~~----~l~~l~~L~~L~ 627 (1053)
.|.....-+++ .+.-|++|+.||
T Consensus 97 ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 97 ENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cCCcccccchhHHHHHHHHcccchhcc
Confidence 75544433332 355678888886
No 281
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.70 E-value=0.053 Score=53.67 Aligned_cols=53 Identities=25% Similarity=0.347 Sum_probs=33.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCc-CHHHHHHHHHHHhC
Q 037851 176 ITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTP-DIKKVQGELADQLG 230 (1053)
Q Consensus 176 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~ 230 (1053)
++.++|++|+||||+++.++......+ ..++.++..... ...+.+...++..+
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g--~~v~~i~~D~~~~~~~~~l~~~~~~~~ 55 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKG--KKVLLVAADTYRPAAIEQLRVLGEQVG 55 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC--CcEEEEEcCCCChHHHHHHHHhcccCC
Confidence 688999999999999999998876432 234445543321 23333444444444
No 282
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.70 E-value=0.26 Score=50.31 Aligned_cols=206 Identities=16% Similarity=0.193 Sum_probs=113.8
Q ss_pred cccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHhhh----cCCCCeEEEEEEcCC--------------
Q 037851 154 AFESRMSTLKSLQNALLDPDVTITGVYGMGGLGKTTLVKEVARQVKK----DKHFDEVVFAEVSDT-------------- 215 (1053)
Q Consensus 154 ~~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~----~~~f~~~~wv~~s~~-------------- 215 (1053)
.+.++++....+......++.+-..++|+.|.||-|.+..+.+..-- +-+-+..-|.+-|..
T Consensus 14 ~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlE 93 (351)
T KOG2035|consen 14 ELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLE 93 (351)
T ss_pred hcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEE
Confidence 35667767777766655567889999999999999999888887542 112233344433322
Q ss_pred -------cCHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhcCCcE-EEEEcCCCCc--cchhhhcCCCCCCCCCcEE
Q 037851 216 -------PDIKKVQGELADQLGMQFDEESDVPGRARKLYARLQKENKI-LIILDNIWED--LDLEKVGVPSGNDCRGCKV 285 (1053)
Q Consensus 216 -------~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~-LlvlDdv~~~--~~~~~l~~~~~~~~~gs~i 285 (1053)
..-+-+.++++++.+....-+. . ..+.| ++|+-.+++. +.-.++....-.....+|+
T Consensus 94 itPSDaG~~DRvViQellKevAQt~qie~-----------~--~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~Rl 160 (351)
T KOG2035|consen 94 ITPSDAGNYDRVVIQELLKEVAQTQQIET-----------Q--GQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRL 160 (351)
T ss_pred eChhhcCcccHHHHHHHHHHHHhhcchhh-----------c--cccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceE
Confidence 0123445555554432211111 0 13344 4445544432 2222222222222345677
Q ss_pred EEEecChH-HHHhhC--CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCchHHHHHHHHHhcC----
Q 037851 286 LLTARDRH-VLESIG--SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPIAIVTLAKALRNK---- 358 (1053)
Q Consensus 286 ivTtR~~~-v~~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~L~~~---- 358 (1053)
|+..-+-. +..... .-.+++...+++|....+++.+....- .-..+++.+|+++++|.---+..+--.++-+
T Consensus 161 Il~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l-~lp~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~~ 239 (351)
T KOG2035|consen 161 ILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGL-QLPKELLKRIAEKSNRNLRRALLMLEAVRVNNEPF 239 (351)
T ss_pred EEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcc-cCcHHHHHHHHHHhcccHHHHHHHHHHHHhccccc
Confidence 66433221 111111 345788899999999999988752221 1126889999999999865444444443321
Q ss_pred ------CCHHHHHHHHHHhcC
Q 037851 359 ------TSVSTWKDALRQLKR 373 (1053)
Q Consensus 359 ------~~~~~w~~~l~~l~~ 373 (1053)
-..-+|+-++.++..
T Consensus 240 ~a~~~~i~~~dWe~~i~e~a~ 260 (351)
T KOG2035|consen 240 TANSQVIPKPDWEIYIQEIAR 260 (351)
T ss_pred cccCCCCCCccHHHHHHHHHH
Confidence 134579888876543
No 283
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.68 E-value=0.077 Score=55.93 Aligned_cols=57 Identities=28% Similarity=0.430 Sum_probs=42.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhcC----CCCeEEEEEEcCCcCHHHHHHHHHHHhCC
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVKKDK----HFDEVVFAEVSDTPDIKKVQGELADQLGM 231 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 231 (1053)
..+.=|+|.+|+|||+||.+++-...... .=..++|++-...++...+. +|+++.+.
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~ 98 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGL 98 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhcccc
Confidence 36889999999999999998876643221 22459999999989887774 56766543
No 284
>PHA02244 ATPase-like protein
Probab=95.66 E-value=0.051 Score=59.01 Aligned_cols=36 Identities=14% Similarity=0.207 Sum_probs=26.6
Q ss_pred HHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 162 LKSLQNALLDPDVTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 162 ~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
...+..++..+ .-|.|+|++|+|||++|+++++...
T Consensus 109 ~~ri~r~l~~~--~PVLL~GppGtGKTtLA~aLA~~lg 144 (383)
T PHA02244 109 TADIAKIVNAN--IPVFLKGGAGSGKNHIAEQIAEALD 144 (383)
T ss_pred HHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHhC
Confidence 34555555433 3467899999999999999998754
No 285
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.60 E-value=0.0087 Score=56.84 Aligned_cols=36 Identities=25% Similarity=0.341 Sum_probs=27.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEE
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAE 211 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~ 211 (1053)
..+|.|.|.+|.||||||+.+.+.....+ ..+.+++
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g--~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARG--IKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTT--S-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcC--CcEEEec
Confidence 46899999999999999999999987543 3344443
No 286
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.58 E-value=0.089 Score=55.05 Aligned_cols=48 Identities=10% Similarity=0.165 Sum_probs=35.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHH
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGE 224 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 224 (1053)
...++.|.|.+|+|||++|.++...... .-..++|++... +..++.+.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~--~ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQ--MGEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH--cCCcEEEEEeeC--CHHHHHHH
Confidence 4579999999999999999998766432 235688888765 44455544
No 287
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.58 E-value=0.067 Score=51.27 Aligned_cols=24 Identities=21% Similarity=0.477 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 176 ITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 176 vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
+|.|+|.+|.||||+|+.+.....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999875
No 288
>PRK14974 cell division protein FtsY; Provisional
Probab=95.55 E-value=0.15 Score=55.67 Aligned_cols=92 Identities=22% Similarity=0.258 Sum_probs=51.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCC-cCHHHHHHHHHHHhCCCCCCC---CChhHHHHHHHH
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDT-PDIKKVQGELADQLGMQFDEE---SDVPGRARKLYA 248 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~l~~ 248 (1053)
+..+|.++|+.|+||||++..++...... .+ .++.+..... ....+.++...+.++...... .+....+....+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~-g~-~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~ 216 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN-GF-SVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIE 216 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc-CC-eEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHH
Confidence 46899999999999999999998877643 23 3344443211 123344566677776543211 122122222222
Q ss_pred HHhcCCcEEEEEcCCCCc
Q 037851 249 RLQKENKILIILDNIWED 266 (1053)
Q Consensus 249 ~l~~~~~~LlvlDdv~~~ 266 (1053)
.......=+|++|..-..
T Consensus 217 ~~~~~~~DvVLIDTaGr~ 234 (336)
T PRK14974 217 HAKARGIDVVLIDTAGRM 234 (336)
T ss_pred HHHhCCCCEEEEECCCcc
Confidence 222122238889988543
No 289
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.52 E-value=0.18 Score=59.46 Aligned_cols=150 Identities=19% Similarity=0.218 Sum_probs=84.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhc
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLGMQFDEESDVPGRARKLYARLQK 252 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 252 (1053)
..+.+.++|++|.|||.||+++++... ..| +.+... ++ .... ....+..+..+.+.-.+
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~--~~f-----i~v~~~----~l----~sk~------vGesek~ir~~F~~A~~ 333 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESR--SRF-----ISVKGS----EL----LSKW------VGESEKNIRELFEKARK 333 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCC--CeE-----EEeeCH----HH----hccc------cchHHHHHHHHHHHHHc
Confidence 456899999999999999999999654 333 333222 11 1100 01111334444444445
Q ss_pred CCcEEEEEcCCCCccch-------------hhhcCCCC--CCCCCcEEEEEecChHHHHh----hC--CCcccccCCCHH
Q 037851 253 ENKILIILDNIWEDLDL-------------EKVGVPSG--NDCRGCKVLLTARDRHVLES----IG--SKTLRIDVLNDE 311 (1053)
Q Consensus 253 ~~~~LlvlDdv~~~~~~-------------~~l~~~~~--~~~~gs~iivTtR~~~v~~~----~~--~~~~~l~~L~~~ 311 (1053)
..+..|++|+++....+ ..+...+. ....+..||-||-..+.... -| ...+.+.+-+.+
T Consensus 334 ~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~ 413 (494)
T COG0464 334 LAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLE 413 (494)
T ss_pred CCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHH
Confidence 78999999999644211 12222222 12233445666655544332 12 567889999999
Q ss_pred HHHHHHHHHhCCCCCCccchHHHHHHHHHhCC
Q 037851 312 EAWTLFKKMTGDCAEKGELKSIATDVAKECGG 343 (1053)
Q Consensus 312 ~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G 343 (1053)
+..+.|+.+.......-...-..+.+++...|
T Consensus 414 ~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~ 445 (494)
T COG0464 414 ERLEIFKIHLRDKKPPLAEDVDLEELAEITEG 445 (494)
T ss_pred HHHHHHHHHhcccCCcchhhhhHHHHHHHhcC
Confidence 99999999986333221111224445555554
No 290
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.52 E-value=0.065 Score=53.42 Aligned_cols=127 Identities=20% Similarity=0.241 Sum_probs=66.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcC--CcCHHHHH------HHHHHHhCCCCCC-----CCCh
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSD--TPDIKKVQ------GELADQLGMQFDE-----ESDV 239 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~--~~~~~~~~------~~i~~~l~~~~~~-----~~~~ 239 (1053)
...+++|+|..|.|||||++.++.... ...+.+++.-.. ..+..... .++++.++..... .-..
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~---~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLK---PSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 346999999999999999999987543 234444443111 11222211 1245555442111 1111
Q ss_pred -hHHHHHHHHHHhcCCcEEEEEcCCCCccc---hhhhcCCCCC--CCCCcEEEEEecChHHHHhhCCCcc
Q 037851 240 -PGRARKLYARLQKENKILIILDNIWEDLD---LEKVGVPSGN--DCRGCKVLLTARDRHVLESIGSKTL 303 (1053)
Q Consensus 240 -~~~~~~l~~~l~~~~~~LlvlDdv~~~~~---~~~l~~~~~~--~~~gs~iivTtR~~~v~~~~~~~~~ 303 (1053)
....-.+.+.+. ..+-++++|+....-+ .+.+...+.. ...|..||++|.+.+....+.+..+
T Consensus 101 G~~qrl~laral~-~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~ 169 (180)
T cd03214 101 GERQRVLLARALA-QEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVI 169 (180)
T ss_pred HHHHHHHHHHHHh-cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE
Confidence 111223334443 6788999999864422 2222222111 1125678999988776544433333
No 291
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.52 E-value=0.08 Score=57.73 Aligned_cols=90 Identities=18% Similarity=0.190 Sum_probs=55.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCc-CHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHh
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTP-DIKKVQGELADQLGMQFDEESDVPGRARKLYARLQ 251 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 251 (1053)
+.+++.++|+.|+||||++..++.....++ ..+.++++.... ...+-++...+.++.......+..+. ....+.+.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g--~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL-~~al~~l~ 281 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQN--RTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAEL-EEAVQYMT 281 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHH-HHHHHHHH
Confidence 457999999999999999999998765332 356677765432 23445566666666543333333222 33333332
Q ss_pred -cCCcEEEEEcCCCC
Q 037851 252 -KENKILIILDNIWE 265 (1053)
Q Consensus 252 -~~~~~LlvlDdv~~ 265 (1053)
.+..=+|++|-.-.
T Consensus 282 ~~~~~D~VLIDTAGr 296 (407)
T PRK12726 282 YVNCVDHILIDTVGR 296 (407)
T ss_pred hcCCCCEEEEECCCC
Confidence 13456778887744
No 292
>PRK06547 hypothetical protein; Provisional
Probab=95.51 E-value=0.02 Score=56.14 Aligned_cols=36 Identities=25% Similarity=0.267 Sum_probs=29.0
Q ss_pred HHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 164 SLQNALLDPDVTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 164 ~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
.+...+......+|+|.|++|+||||+|+.+++...
T Consensus 5 ~~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~~ 40 (172)
T PRK06547 5 LIAARLCGGGMITVLIDGRSGSGKTTLAGALAARTG 40 (172)
T ss_pred HHHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 344445566778999999999999999999998753
No 293
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.47 E-value=0.11 Score=57.76 Aligned_cols=90 Identities=16% Similarity=0.193 Sum_probs=54.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhcC--CCCeEEEEEEcCCc-CHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHH
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKKDK--HFDEVVFAEVSDTP-DIKKVQGELADQLGMQFDEESDVPGRARKLYAR 249 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~--~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 249 (1053)
..++|.++|+.|+||||.+..++....... .-..+..+++.... .....++..++.++.+......... .......
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~-l~~~L~~ 251 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKD-LKEEITQ 251 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHH-HHHHHHH
Confidence 457999999999999999999998765321 12345566665422 2333466666666665433333322 2222233
Q ss_pred HhcCCcEEEEEcCCCC
Q 037851 250 LQKENKILIILDNIWE 265 (1053)
Q Consensus 250 l~~~~~~LlvlDdv~~ 265 (1053)
+ .+.-+|++|.+..
T Consensus 252 ~--~~~DlVLIDTaGr 265 (388)
T PRK12723 252 S--KDFDLVLVDTIGK 265 (388)
T ss_pred h--CCCCEEEEcCCCC
Confidence 3 3456888898843
No 294
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.46 E-value=0.04 Score=59.31 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=24.9
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
-+..++|||++|.|||.+|+.+++...
T Consensus 147 ~PlgllL~GPPGcGKTllAraiA~elg 173 (413)
T PLN00020 147 VPLILGIWGGKGQGKSFQCELVFKKMG 173 (413)
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHHcC
Confidence 467899999999999999999999976
No 295
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.41 E-value=0.1 Score=52.19 Aligned_cols=116 Identities=14% Similarity=0.157 Sum_probs=66.8
Q ss_pred CCcccccchHHHHHHHHH----HhcCCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHH
Q 037851 150 KGYEAFESRMSTLKSLQN----ALLDPDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGEL 225 (1053)
Q Consensus 150 ~~~~~~~gR~~~~~~l~~----~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 225 (1053)
.+...++|-+...+.+++ ++..-...-|.+||--|.|||+|++++.+.+..+ .-. -|.|.+. ++.
T Consensus 57 i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~--glr--LVEV~k~-dl~------ 125 (287)
T COG2607 57 IDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADE--GLR--LVEVDKE-DLA------ 125 (287)
T ss_pred cCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhc--CCe--EEEEcHH-HHh------
Confidence 344556787777777664 2323344578899999999999999999998743 212 2344332 111
Q ss_pred HHHhCCCCCCCCChhHHHHHHHHHHh-cCCcEEEEEcCCCCc---cchhhhcCCCCCC---CCCcEEEEEecCh
Q 037851 226 ADQLGMQFDEESDVPGRARKLYARLQ-KENKILIILDNIWED---LDLEKVGVPSGND---CRGCKVLLTARDR 292 (1053)
Q Consensus 226 ~~~l~~~~~~~~~~~~~~~~l~~~l~-~~~~~LlvlDdv~~~---~~~~~l~~~~~~~---~~gs~iivTtR~~ 292 (1053)
..-.+.+.++ ..+||+|+.||..-+ .....++..+..+ .+.-.++..|.++
T Consensus 126 ----------------~Lp~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNR 183 (287)
T COG2607 126 ----------------TLPDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNR 183 (287)
T ss_pred ----------------hHHHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCC
Confidence 1112222232 478999999998432 3455555554332 2233445455444
No 296
>PRK07667 uridine kinase; Provisional
Probab=95.41 E-value=0.023 Score=57.33 Aligned_cols=38 Identities=29% Similarity=0.445 Sum_probs=30.2
Q ss_pred HHHHHHhc--CCCeeEEEEEcCCCCcHHHHHHHHHHHhhh
Q 037851 163 KSLQNALL--DPDVTITGVYGMGGLGKTTLVKEVARQVKK 200 (1053)
Q Consensus 163 ~~l~~~l~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 200 (1053)
+.+++.+. .++..+|+|.|.+|.||||+|+.+......
T Consensus 4 ~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~ 43 (193)
T PRK07667 4 NELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQ 43 (193)
T ss_pred HHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45555554 345579999999999999999999998763
No 297
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.38 E-value=0.057 Score=55.86 Aligned_cols=43 Identities=26% Similarity=0.376 Sum_probs=33.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcC
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPD 217 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 217 (1053)
...++.|.|.+|+||||+|.+++..... .-..++|++....+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~~--~g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETAG--QGKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh--cCCeEEEEECCCCCH
Confidence 3579999999999999999999987652 234678887655543
No 298
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.38 E-value=0.054 Score=50.57 Aligned_cols=45 Identities=27% Similarity=0.441 Sum_probs=34.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhCCCC
Q 037851 176 ITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLGMQF 233 (1053)
Q Consensus 176 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~ 233 (1053)
+|.|-|.+|.||||+|+.+++...-. . + +.-.++++|++..|...
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~----~---v------saG~iFR~~A~e~gmsl 46 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK----L---V------SAGTIFREMARERGMSL 46 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc----e---e------eccHHHHHHHHHcCCCH
Confidence 68999999999999999999987621 1 1 33467888888887653
No 299
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.37 E-value=0.11 Score=55.15 Aligned_cols=91 Identities=22% Similarity=0.287 Sum_probs=50.8
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCc-CHHHHHHHHHHHhCCCC---CCCCChhHHH-HHH
Q 037851 172 PDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTP-DIKKVQGELADQLGMQF---DEESDVPGRA-RKL 246 (1053)
Q Consensus 172 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~---~~~~~~~~~~-~~l 246 (1053)
.+.+++.++|++|+||||++..++......+ ..+.+++..... ...+-+....+..+... ....+..... ..+
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g--~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l 147 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQG--KSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAI 147 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcC--CEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHH
Confidence 3468999999999999999999998876332 356666654321 12233344555555332 1112221222 222
Q ss_pred HHHHhcCCcEEEEEcCCCC
Q 037851 247 YARLQKENKILIILDNIWE 265 (1053)
Q Consensus 247 ~~~l~~~~~~LlvlDdv~~ 265 (1053)
.... ....=++++|-.-.
T Consensus 148 ~~~~-~~~~D~ViIDT~G~ 165 (272)
T TIGR00064 148 QKAK-ARNIDVVLIDTAGR 165 (272)
T ss_pred HHHH-HCCCCEEEEeCCCC
Confidence 2222 24455788887743
No 300
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.37 E-value=0.064 Score=52.10 Aligned_cols=26 Identities=35% Similarity=0.581 Sum_probs=23.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhh
Q 037851 175 TITGVYGMGGLGKTTLVKEVARQVKK 200 (1053)
Q Consensus 175 ~vi~I~G~~GiGKTtLa~~v~~~~~~ 200 (1053)
+.|.+.|.+|+||||+|++++...+.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~ 27 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQ 27 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHH
Confidence 46789999999999999999998874
No 301
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.36 E-value=2 Score=47.53 Aligned_cols=59 Identities=29% Similarity=0.427 Sum_probs=40.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcC-CcCHHHHHHHHHHHhCCCC
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSD-TPDIKKVQGELADQLGMQF 233 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~ 233 (1053)
.+.||-.+|.-|.||||-|-.+++.++.++ + .+.-|++.- .+..-+-++.+.++.+.+.
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~-~-kvllVaaD~~RpAA~eQL~~La~q~~v~~ 158 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKG-K-KVLLVAADTYRPAAIEQLKQLAEQVGVPF 158 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcC-C-ceEEEecccCChHHHHHHHHHHHHcCCce
Confidence 367999999999999999999999988522 2 223333321 2334556677777777654
No 302
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.36 E-value=0.05 Score=60.33 Aligned_cols=85 Identities=21% Similarity=0.228 Sum_probs=46.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCC-cCHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhc
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDT-PDIKKVQGELADQLGMQFDEESDVPGRARKLYARLQK 252 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 252 (1053)
..++.++|++|+||||+|..++........+ .+..++.... ......++..++.++.+.... .....+.+.+..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~-~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~----~~~~~l~~~l~~ 297 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGK-SVSLYTTDNYRIAAIEQLKRYADTMGMPFYPV----KDIKKFKETLAR 297 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCC-eEEEecccchhhhHHHHHHHHHHhcCCCeeeh----HHHHHHHHHHHh
Confidence 4689999999999999999999765322222 3333443321 122334444455555433211 112344444433
Q ss_pred CCcEEEEEcCC
Q 037851 253 ENKILIILDNI 263 (1053)
Q Consensus 253 ~~~~LlvlDdv 263 (1053)
...=+||+|-.
T Consensus 298 ~~~D~VLIDTa 308 (432)
T PRK12724 298 DGSELILIDTA 308 (432)
T ss_pred CCCCEEEEeCC
Confidence 33345888854
No 303
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.35 E-value=0.16 Score=55.55 Aligned_cols=99 Identities=22% Similarity=0.243 Sum_probs=58.1
Q ss_pred HHHHHHHhcCC----CeeEEEEEcCCCCcHH-HHHHHHHHHhhhcCCCCeEEEEEEcCC-cCHHHHHHHHHHHhCCCCCC
Q 037851 162 LKSLQNALLDP----DVTITGVYGMGGLGKT-TLVKEVARQVKKDKHFDEVVFAEVSDT-PDIKKVQGELADQLGMQFDE 235 (1053)
Q Consensus 162 ~~~l~~~l~~~----~~~vi~I~G~~GiGKT-tLa~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~ 235 (1053)
...+..++.++ +.++|.+||+.||||| |||+..+.-... ..=..+..++.... ....+-++..++-++.+...
T Consensus 187 l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar~~~~-~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~v 265 (407)
T COG1419 187 LRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAARYVML-KKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEV 265 (407)
T ss_pred HHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHHHHHhh-ccCcceEEEEeccchhhHHHHHHHHHHHhCCceEE
Confidence 34444454433 3689999999999997 566655555422 22345666766543 24566667778888877665
Q ss_pred CCChhHHHHHHHHHHhcCCcEEEEEcCCC
Q 037851 236 ESDVPGRARKLYARLQKENKILIILDNIW 264 (1053)
Q Consensus 236 ~~~~~~~~~~l~~~l~~~~~~LlvlDdv~ 264 (1053)
..+..+. ..-...+. + +=+|.+|-+.
T Consensus 266 v~~~~el-~~ai~~l~-~-~d~ILVDTaG 291 (407)
T COG1419 266 VYSPKEL-AEAIEALR-D-CDVILVDTAG 291 (407)
T ss_pred ecCHHHH-HHHHHHhh-c-CCEEEEeCCC
Confidence 5555333 23333342 2 3455567664
No 304
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.34 E-value=0.37 Score=56.34 Aligned_cols=167 Identities=17% Similarity=0.248 Sum_probs=95.0
Q ss_pred cccccchHHHHHHHHHHhc---------CC---CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHH
Q 037851 152 YEAFESRMSTLKSLQNALL---------DP---DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIK 219 (1053)
Q Consensus 152 ~~~~~gR~~~~~~l~~~l~---------~~---~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 219 (1053)
-+++-|-++.+.+|.+-+. .. +..=|.++|++|.|||-+|++|+.... .-|++|-.+
T Consensus 671 WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcs-------L~FlSVKGP---- 739 (953)
T KOG0736|consen 671 WDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECS-------LNFLSVKGP---- 739 (953)
T ss_pred hhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhce-------eeEEeecCH----
Confidence 3456788888888887654 11 245688999999999999999998876 335666543
Q ss_pred HHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCcc-----------c----hhhhcCCC---CC-CC
Q 037851 220 KVQGELADQLGMQFDEESDVPGRARKLYARLQKENKILIILDNIWEDL-----------D----LEKVGVPS---GN-DC 280 (1053)
Q Consensus 220 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~-----------~----~~~l~~~~---~~-~~ 280 (1053)
+++.- .+| ..++-++++.++-+..++++|++|.+++.. . ...+...+ .+ ..
T Consensus 740 ELLNM---YVG-------qSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s 809 (953)
T KOG0736|consen 740 ELLNM---YVG-------QSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSS 809 (953)
T ss_pred HHHHH---Hhc-------chHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCC
Confidence 11111 111 112345666777667899999999997541 0 11121222 11 33
Q ss_pred CCcEEEEEecChHHHHh----hC--CCcccccCCCHHHHHH-HHHHHh--CCCCCCccchHHHHHHHHHhCC
Q 037851 281 RGCKVLLTARDRHVLES----IG--SKTLRIDVLNDEEAWT-LFKKMT--GDCAEKGELKSIATDVAKECGG 343 (1053)
Q Consensus 281 ~gs~iivTtR~~~v~~~----~~--~~~~~l~~L~~~~~~~-lf~~~~--~~~~~~~~~~~~~~~i~~~~~G 343 (1053)
.+--||=.|..++..+. -| +.-+.+++=+.+++.. +++... |.-...-+ ..+|+++|.-
T Consensus 810 ~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVd----L~eiAk~cp~ 877 (953)
T KOG0736|consen 810 QDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVD----LVEIAKKCPP 877 (953)
T ss_pred CceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcC----HHHHHhhCCc
Confidence 34456666666655542 22 4556666666555543 232221 22222222 4557777753
No 305
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.31 E-value=0.052 Score=54.79 Aligned_cols=38 Identities=26% Similarity=0.409 Sum_probs=28.3
Q ss_pred HHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHhhhc
Q 037851 163 KSLQNALLDPDVTITGVYGMGGLGKTTLVKEVARQVKKD 201 (1053)
Q Consensus 163 ~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 201 (1053)
+.+...+. ++-+++.|.|.+|.||||+++.+.......
T Consensus 8 ~a~~~~l~-~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~ 45 (196)
T PF13604_consen 8 EAVRAILT-SGDRVSVLQGPAGTGKTTLLKALAEALEAA 45 (196)
T ss_dssp HHHHHHHH-CTCSEEEEEESTTSTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHh-cCCeEEEEEECCCCCHHHHHHHHHHHHHhC
Confidence 33333333 344788999999999999999998887754
No 306
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.31 E-value=0.054 Score=51.58 Aligned_cols=110 Identities=25% Similarity=0.281 Sum_probs=57.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhcC
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLGMQFDEESDVPGRARKLYARLQKE 253 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 253 (1053)
..+++|+|..|.|||||++.+...... ..+.+|+.-.. .++.-.. -+.-....-.+.+.+. .
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~---~~G~i~~~~~~-------------~i~~~~~-lS~G~~~rv~laral~-~ 87 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELEP---DEGIVTWGSTV-------------KIGYFEQ-LSGGEKMRLALAKLLL-E 87 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCCC---CceEEEECCeE-------------EEEEEcc-CCHHHHHHHHHHHHHh-c
Confidence 469999999999999999999775432 23444432100 0000000 1111111222344443 5
Q ss_pred CcEEEEEcCCCCccc---hhhhcCCCCCCCCCcEEEEEecChHHHHhhCCCcc
Q 037851 254 NKILIILDNIWEDLD---LEKVGVPSGNDCRGCKVLLTARDRHVLESIGSKTL 303 (1053)
Q Consensus 254 ~~~LlvlDdv~~~~~---~~~l~~~~~~~~~gs~iivTtR~~~v~~~~~~~~~ 303 (1053)
++-++++|+....-+ ...+...+... +..||++|.+.+......++++
T Consensus 88 ~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~~~d~v~ 138 (144)
T cd03221 88 NPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQVATKII 138 (144)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEE
Confidence 778999999754422 22222111111 2468888888776654433333
No 307
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.30 E-value=0.1 Score=54.18 Aligned_cols=53 Identities=15% Similarity=0.172 Sum_probs=35.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhC
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLG 230 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 230 (1053)
...++.|.|..|.||||+|.+++.....++ ..++|++... +..++.+.+ .+++
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g--~~~~yi~~e~--~~~~~~~~~-~~~g 75 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQNG--YSVSYVSTQL--TTTEFIKQM-MSLG 75 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhCC--CcEEEEeCCC--CHHHHHHHH-HHhC
Confidence 346999999999999999877766553222 3466776433 455666665 3444
No 308
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.29 E-value=0.044 Score=54.03 Aligned_cols=110 Identities=21% Similarity=0.127 Sum_probs=59.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEE------EcCCcCHHHHHHHHHHHhCCCCCCCCChhHHHHHH
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAE------VSDTPDIKKVQGELADQLGMQFDEESDVPGRARKL 246 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~------~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l 246 (1053)
...+++|+|..|.|||||++.++.-... ..+.+++. +.+... -+.-....-.+
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~i~~~~q~~~------------------LSgGq~qrv~l 82 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLIP---NGDNDEWDGITPVYKPQYID------------------LSGGELQRVAI 82 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCC---CCcEEEECCEEEEEEcccCC------------------CCHHHHHHHHH
Confidence 3469999999999999999999875432 22333321 111111 11111122233
Q ss_pred HHHHhcCCcEEEEEcCCCCccc---hhhh---cCCCCCCCCCcEEEEEecChHHHHhhCCCcccc
Q 037851 247 YARLQKENKILIILDNIWEDLD---LEKV---GVPSGNDCRGCKVLLTARDRHVLESIGSKTLRI 305 (1053)
Q Consensus 247 ~~~l~~~~~~LlvlDdv~~~~~---~~~l---~~~~~~~~~gs~iivTtR~~~v~~~~~~~~~~l 305 (1053)
.+.+. .++-++++|+--..-+ ...+ ...+.. ..+..||++|.+...........+.+
T Consensus 83 aral~-~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~~~~tiiivsH~~~~~~~~~d~i~~l 145 (177)
T cd03222 83 AAALL-RNATFYLFDEPSAYLDIEQRLNAARAIRRLSE-EGKKTALVVEHDLAVLDYLSDRIHVF 145 (177)
T ss_pred HHHHh-cCCCEEEEECCcccCCHHHHHHHHHHHHHHHH-cCCCEEEEEECCHHHHHHhCCEEEEE
Confidence 34443 6788999999754422 1111 111111 12356888888877665444344333
No 309
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.27 E-value=0.072 Score=52.22 Aligned_cols=124 Identities=18% Similarity=0.169 Sum_probs=60.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhc-CC--CC---eEEEEEEcCCcCHHHHHHHHHHHhCC-CCCCCCChhHHHHH
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKKD-KH--FD---EVVFAEVSDTPDIKKVQGELADQLGM-QFDEESDVPGRARK 245 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~--f~---~~~wv~~s~~~~~~~~~~~i~~~l~~-~~~~~~~~~~~~~~ 245 (1053)
...+++|+|..|.|||||++.++...... +. ++ .+.++ .+..... ...+.+.+.. ....-+.-....-.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~--~q~~~~~--~~tv~~nl~~~~~~~LS~G~~~rv~ 101 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFL--PQRPYLP--LGTLREQLIYPWDDVLSGGEQQRLA 101 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEE--CCCCccc--cccHHHHhhccCCCCCCHHHHHHHH
Confidence 34689999999999999999998764321 10 11 12222 2222111 0122222211 11111111122223
Q ss_pred HHHHHhcCCcEEEEEcCCCCccc---hhhhcCCCCCCCCCcEEEEEecChHHHHhhCCCccc
Q 037851 246 LYARLQKENKILIILDNIWEDLD---LEKVGVPSGNDCRGCKVLLTARDRHVLESIGSKTLR 304 (1053)
Q Consensus 246 l~~~l~~~~~~LlvlDdv~~~~~---~~~l~~~~~~~~~gs~iivTtR~~~v~~~~~~~~~~ 304 (1053)
+.+.+. .++-++++|+--..-+ ...+...+... +..||++|.+..... ..++.+.
T Consensus 102 laral~-~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~-~~d~i~~ 159 (166)
T cd03223 102 FARLLL-HKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK-FHDRVLD 159 (166)
T ss_pred HHHHHH-cCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh-hCCEEEE
Confidence 444554 6788899998754422 12221111111 356888888876543 3344443
No 310
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.26 E-value=0.055 Score=53.84 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=22.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
..+++|.|..|.|||||++.++....
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCC
Confidence 46899999999999999999987643
No 311
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.24 E-value=0.075 Score=53.20 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 176 ITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 176 vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
+|.|+|++|+||||+|+.++....
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC
Confidence 578999999999999999998764
No 312
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.23 E-value=0.026 Score=64.47 Aligned_cols=46 Identities=15% Similarity=0.229 Sum_probs=40.7
Q ss_pred cccchHHHHHHHHHHhc------CCCeeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 154 AFESRMSTLKSLQNALL------DPDVTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 154 ~~~gR~~~~~~l~~~l~------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
+++|-++.+++|++.|. ..+.+++.++|+.|+||||||+.+++-.+
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le 128 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLME 128 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHH
Confidence 57899999999999883 45568999999999999999999999776
No 313
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.23 E-value=0.0073 Score=36.16 Aligned_cols=21 Identities=29% Similarity=0.659 Sum_probs=13.4
Q ss_pred CCcEEEccCCCCcccchhhhc
Q 037851 574 DLEILSLQGSKIEQLPREIGQ 594 (1053)
Q Consensus 574 ~L~~L~l~~~~l~~lp~~i~~ 594 (1053)
+|++||+++|.++.+|.++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 466666776666666665544
No 314
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.22 E-value=0.0098 Score=60.16 Aligned_cols=102 Identities=28% Similarity=0.374 Sum_probs=56.7
Q ss_pred CCCceeEEeecCccccCCCcccccCccCcEEEcCCcc--cCC--ccccCCCCCCcEEEccCCCCcccc--hhhhccCCCC
Q 037851 526 GTPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDGCE--LED--IRVIGELKDLEILSLQGSKIEQLP--REIGQLTQLK 599 (1053)
Q Consensus 526 ~~~~Lr~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~--~~~--~~~i~~l~~L~~L~l~~~~l~~lp--~~i~~L~~L~ 599 (1053)
.+..|..|++.++.++++-. +..|++|++|.++.|. +.. .....++++|++|++++|+++.+. .....+.+|.
T Consensus 41 ~~~~le~ls~~n~gltt~~~-~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLTN-FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK 119 (260)
T ss_pred cccchhhhhhhccceeeccc-CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence 34445555555555544322 4456677777777773 222 233445577777777777665321 1346677777
Q ss_pred eeeccCcccccc--cCcchhcCCccCceeec
Q 037851 600 LLDLSNCSKLKV--IAPNVLSNLSQLEELYM 628 (1053)
Q Consensus 600 ~L~l~~~~~l~~--~~~~~l~~l~~L~~L~l 628 (1053)
.|++.+|..... --...+.-+++|..|+-
T Consensus 120 ~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 120 SLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred hhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 777777643221 11223455677777764
No 315
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.20 E-value=0.16 Score=57.78 Aligned_cols=87 Identities=18% Similarity=0.191 Sum_probs=49.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCc-CHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhc
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTP-DIKKVQGELADQLGMQFDEESDVPGRARKLYARLQK 252 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 252 (1053)
.+++.++|++|+||||++..++........-..+.+|+..... ...+.++...+.++............. .....+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~-~~l~~~-- 297 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELA-KALEQL-- 297 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHH-HHHHHh--
Confidence 3699999999999999999988776511222456667664421 122334444555554433222222222 222333
Q ss_pred CCcEEEEEcCC
Q 037851 253 ENKILIILDNI 263 (1053)
Q Consensus 253 ~~~~LlvlDdv 263 (1053)
...=+||+|..
T Consensus 298 ~~~DlVlIDt~ 308 (424)
T PRK05703 298 RDCDVILIDTA 308 (424)
T ss_pred CCCCEEEEeCC
Confidence 23567888976
No 316
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.20 E-value=0.1 Score=57.35 Aligned_cols=58 Identities=26% Similarity=0.444 Sum_probs=42.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCC----CCeEEEEEEcCCcCHHHHHHHHHHHhCC
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKKDKH----FDEVVFAEVSDTPDIKKVQGELADQLGM 231 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 231 (1053)
...++-|+|.+|+|||++|.+++........ =..++|++....++...+. ++++.++.
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~g~ 162 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEALGL 162 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHH-HHHHHcCC
Confidence 3578999999999999999999876532211 1478999999888877664 45555543
No 317
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.18 E-value=0.017 Score=53.98 Aligned_cols=22 Identities=45% Similarity=0.782 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 037851 177 TGVYGMGGLGKTTLVKEVARQV 198 (1053)
Q Consensus 177 i~I~G~~GiGKTtLa~~v~~~~ 198 (1053)
|+|.|..|+||||+|+.+.+..
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999885
No 318
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.18 E-value=0.11 Score=55.40 Aligned_cols=28 Identities=18% Similarity=0.177 Sum_probs=23.9
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 172 PDVTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 172 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
..+.+|+|.|..|+||||+|+.+..-..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4567999999999999999998876654
No 319
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.16 E-value=0.076 Score=58.12 Aligned_cols=59 Identities=19% Similarity=0.296 Sum_probs=43.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhc---C-CCCeEEEEEEcCCcCHHHHHHHHHHHhCCC
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKKD---K-HFDEVVFAEVSDTPDIKKVQGELADQLGMQ 232 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~-~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 232 (1053)
...++-|+|.+|+|||++|..++-..... + .-..++|++....++.+++ .+|++.++.+
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~~ 184 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGLN 184 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCCC
Confidence 35788999999999999999887543311 1 1136899999999888776 4667776643
No 320
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.16 E-value=0.047 Score=51.79 Aligned_cols=76 Identities=24% Similarity=0.295 Sum_probs=46.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhcCCcE
Q 037851 177 TGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLGMQFDEESDVPGRARKLYARLQKENKI 256 (1053)
Q Consensus 177 i~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~ 256 (1053)
|.++|++|+|||+||+.+++... .....+.++...+..++....--. ........ ..+.+.+ .+..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~-----~~~~~i~~~~~~~~~dl~g~~~~~-~~~~~~~~------~~l~~a~--~~~~ 67 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLG-----RPVIRINCSSDTTEEDLIGSYDPS-NGQFEFKD------GPLVRAM--RKGG 67 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHT-----CEEEEEE-TTTSTHHHHHCEEET--TTTTCEEE-------CCCTTH--HEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhh-----cceEEEEeccccccccceeeeeec-cccccccc------ccccccc--ccee
Confidence 67999999999999999999873 234557888888877776433222 11000000 0001111 2789
Q ss_pred EEEEcCCCCc
Q 037851 257 LIILDNIWED 266 (1053)
Q Consensus 257 LlvlDdv~~~ 266 (1053)
++|||++...
T Consensus 68 il~lDEin~a 77 (139)
T PF07728_consen 68 ILVLDEINRA 77 (139)
T ss_dssp EEEESSCGG-
T ss_pred EEEECCcccC
Confidence 9999999743
No 321
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.15 E-value=0.12 Score=55.61 Aligned_cols=86 Identities=22% Similarity=0.278 Sum_probs=52.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhCCCCCC----CCCh-hHHHHHHHH
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLGMQFDE----ESDV-PGRARKLYA 248 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~----~~~~-~~~~~~l~~ 248 (1053)
.+++-|+|+.|+||||||..+....... -..++|++.....+. ..++++|.+.+. .++. ++......+
T Consensus 53 G~ivEi~G~~ssGKttLaL~~ia~~q~~--g~~~a~ID~e~~ld~-----~~a~~lGvdl~rllv~~P~~~E~al~~~e~ 125 (322)
T PF00154_consen 53 GRIVEIYGPESSGKTTLALHAIAEAQKQ--GGICAFIDAEHALDP-----EYAESLGVDLDRLLVVQPDTGEQALWIAEQ 125 (322)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT--T-EEEEEESSS---H-----HHHHHTT--GGGEEEEE-SSHHHHHHHHHH
T ss_pred CceEEEeCCCCCchhhhHHHHHHhhhcc--cceeEEecCcccchh-----hHHHhcCccccceEEecCCcHHHHHHHHHH
Confidence 4799999999999999999999876532 356899999887664 455666665432 1222 233333333
Q ss_pred HHhcCCcEEEEEcCCCCc
Q 037851 249 RLQKENKILIILDNIWED 266 (1053)
Q Consensus 249 ~l~~~~~~LlvlDdv~~~ 266 (1053)
.++.+..-++|+|.|-..
T Consensus 126 lirsg~~~lVVvDSv~al 143 (322)
T PF00154_consen 126 LIRSGAVDLVVVDSVAAL 143 (322)
T ss_dssp HHHTTSESEEEEE-CTT-
T ss_pred HhhcccccEEEEecCccc
Confidence 344455568899998654
No 322
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.13 E-value=0.14 Score=55.90 Aligned_cols=59 Identities=20% Similarity=0.291 Sum_probs=43.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhh----cCCCCeEEEEEEcCCcCHHHHHHHHHHHhCCC
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKK----DKHFDEVVFAEVSDTPDIKKVQGELADQLGMQ 232 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~----~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 232 (1053)
...+.-|+|.+|+|||+|+.+++-.... .+.-..++|++....++..++. ++++.++.+
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~-~ia~~~g~d 187 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIV-PIAERFGMD 187 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHH-HHHHHcCCC
Confidence 3478889999999999999988654321 1122468999999998988774 466776654
No 323
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=95.13 E-value=0.43 Score=51.28 Aligned_cols=164 Identities=12% Similarity=0.045 Sum_probs=89.9
Q ss_pred HHHHHHhcCCCe-eEEEEEcCCCCcHHHHHHHHHHHh--------hhcCCCCeEEEEEE-cCCcCHHHHHHHHHHHhCCC
Q 037851 163 KSLQNALLDPDV-TITGVYGMGGLGKTTLVKEVARQV--------KKDKHFDEVVFAEV-SDTPDIKKVQGELADQLGMQ 232 (1053)
Q Consensus 163 ~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~--------~~~~~f~~~~wv~~-s~~~~~~~~~~~i~~~l~~~ 232 (1053)
+.+...+..++. .+..++|..|.||+++|+.+.+.. ....+-+-..+++. .....+.++. ++.+.+...
T Consensus 6 ~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~~ 84 (299)
T PRK07132 6 KFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYFS 84 (299)
T ss_pred HHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhccC
Confidence 444455555444 566699999999999999999886 21122222333322 1222232322 333332211
Q ss_pred CCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCcc--chhhhcCCCCCCCCCcEEEEEe-cChHHHHhhC--CCcccccC
Q 037851 233 FDEESDVPGRARKLYARLQKENKILIILDNIWEDL--DLEKVGVPSGNDCRGCKVLLTA-RDRHVLESIG--SKTLRIDV 307 (1053)
Q Consensus 233 ~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~iivTt-R~~~v~~~~~--~~~~~l~~ 307 (1053)
. ...+++=++|+||++... ...++...+-.-..++.+|++| ....+..... ...+++.+
T Consensus 85 ~----------------~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~ 148 (299)
T PRK07132 85 S----------------FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKE 148 (299)
T ss_pred C----------------cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCC
Confidence 0 002477788889986553 2334433333333456666555 4444444333 67889999
Q ss_pred CCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCchHHHH
Q 037851 308 LNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPIAIVT 350 (1053)
Q Consensus 308 L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~ 350 (1053)
+++++..+.+... + .+ ++.+..++...+|.=.|+..
T Consensus 149 l~~~~l~~~l~~~-~--~~----~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 149 PDQQKILAKLLSK-N--KE----KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred CCHHHHHHHHHHc-C--CC----hhHHHHHHHHcCCHHHHHHH
Confidence 9999998877654 1 11 23356666666662244433
No 324
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=95.12 E-value=0.039 Score=54.98 Aligned_cols=51 Identities=20% Similarity=0.453 Sum_probs=35.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhCCCCC
Q 037851 176 ITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLGMQFD 234 (1053)
Q Consensus 176 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~ 234 (1053)
.|+|+|-||+||||+|..++.....++.|+ +.=|+....+++ .++||...+
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~-VLvVDaDpd~nL-------~~~LGve~~ 52 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYN-VLVVDADPDSNL-------PEALGVEEP 52 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCce-EEEEeCCCCCCh-------HHhcCCCCC
Confidence 689999999999999999777766544343 444666666553 445565543
No 325
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.12 E-value=0.1 Score=53.66 Aligned_cols=24 Identities=25% Similarity=0.415 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 176 ITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 176 vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
+|+|.|..|+||||+|+.+.....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999998875
No 326
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.11 E-value=0.093 Score=56.85 Aligned_cols=86 Identities=23% Similarity=0.373 Sum_probs=59.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhCCCCCCCC-ChhHHHHHHHHHHhc
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLGMQFDEES-DVPGRARKLYARLQK 252 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~l~~~l~~ 252 (1053)
..+|.|-|-+|+|||||.-+++.+...+. .+.||+-.+. ..++ +--++.++...+... -.+...+.+.+.+.+
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~~lA~~~---~vLYVsGEES--~~Qi-klRA~RL~~~~~~l~l~aEt~~e~I~~~l~~ 166 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAARLAKRG---KVLYVSGEES--LQQI-KLRADRLGLPTNNLYLLAETNLEDIIAELEQ 166 (456)
T ss_pred ccEEEEccCCCCCHHHHHHHHHHHHHhcC---cEEEEeCCcC--HHHH-HHHHHHhCCCccceEEehhcCHHHHHHHHHh
Confidence 47999999999999999999999987543 6777766554 3222 344566665432211 112234667777777
Q ss_pred CCcEEEEEcCCCC
Q 037851 253 ENKILIILDNIWE 265 (1053)
Q Consensus 253 ~~~~LlvlDdv~~ 265 (1053)
.++-++|+|.+..
T Consensus 167 ~~p~lvVIDSIQT 179 (456)
T COG1066 167 EKPDLVVIDSIQT 179 (456)
T ss_pred cCCCEEEEeccce
Confidence 8899999999844
No 327
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.10 E-value=0.074 Score=57.90 Aligned_cols=58 Identities=19% Similarity=0.280 Sum_probs=41.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhh---cC-CCCeEEEEEEcCCcCHHHHHHHHHHHhCC
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKK---DK-HFDEVVFAEVSDTPDIKKVQGELADQLGM 231 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~---~~-~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 231 (1053)
...++.|+|.+|+||||||..++..... .+ .-..++|++....++...+ .++++.++.
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~ 156 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGL 156 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCC
Confidence 3579999999999999999998764321 11 1235799998887777664 455666554
No 328
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.10 E-value=0.021 Score=57.78 Aligned_cols=25 Identities=48% Similarity=0.695 Sum_probs=23.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhh
Q 037851 176 ITGVYGMGGLGKTTLVKEVARQVKK 200 (1053)
Q Consensus 176 vi~I~G~~GiGKTtLa~~v~~~~~~ 200 (1053)
||+|.|.+|+||||+|+.+......
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~ 25 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNK 25 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCc
Confidence 7999999999999999999999874
No 329
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.10 E-value=0.042 Score=55.59 Aligned_cols=110 Identities=16% Similarity=0.184 Sum_probs=58.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHH-HHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhcC
Q 037851 175 TITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIK-KVQGELADQLGMQFDEESDVPGRARKLYARLQKE 253 (1053)
Q Consensus 175 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 253 (1053)
.+|.|+|+.|.||||+++.+...... .....++. +.++.... .-...+..+-.. ..+.......+...+. .
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~--~~~~~i~t-~e~~~E~~~~~~~~~i~q~~v----g~~~~~~~~~i~~aLr-~ 73 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINK--NKTHHILT-IEDPIEFVHESKRSLINQREV----GLDTLSFENALKAALR-Q 73 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhh--cCCcEEEE-EcCCccccccCccceeeeccc----CCCccCHHHHHHHHhc-C
Confidence 47899999999999999998877652 22333332 22211100 000011111000 0011123344555554 4
Q ss_pred CcEEEEEcCCCCccchhhhcCCCCCCCCCcEEEEEecChHHH
Q 037851 254 NKILIILDNIWEDLDLEKVGVPSGNDCRGCKVLLTARDRHVL 295 (1053)
Q Consensus 254 ~~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~ 295 (1053)
.+=.+++|++.+.+......... ..|..++.|+...++.
T Consensus 74 ~pd~ii~gEird~e~~~~~l~~a---~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 74 DPDVILVGEMRDLETIRLALTAA---ETGHLVMSTLHTNSAA 112 (198)
T ss_pred CcCEEEEcCCCCHHHHHHHHHHH---HcCCEEEEEecCCcHH
Confidence 56799999998776554433322 2355688888766544
No 330
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.08 E-value=0.13 Score=52.53 Aligned_cols=117 Identities=14% Similarity=0.109 Sum_probs=58.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHh--hhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhCCCCC---CCCChhHHHHHHHH
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQV--KKDKHFDEVVFAEVSDTPDIKKVQGELADQLGMQFD---EESDVPGRARKLYA 248 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~--~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~ 248 (1053)
.+++.|+|+.|.||||+.+.+.... ...+.|...-...+. ...++...++.... ..+.......++..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~-------~~d~i~~~l~~~~si~~~~S~f~~el~~l~~ 101 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIG-------LVDKIFTRMSSRESVSSGQSAFMIDLYQVSK 101 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEe-------eeeeeeeeeCCccChhhccchHHHHHHHHHH
Confidence 4889999999999999999998432 211222110000000 11111111111110 00111122222222
Q ss_pred HHh-cCCcEEEEEcCCCCccch-------hhhcCCCCCC-CCCcEEEEEecChHHHHh
Q 037851 249 RLQ-KENKILIILDNIWEDLDL-------EKVGVPSGND-CRGCKVLLTARDRHVLES 297 (1053)
Q Consensus 249 ~l~-~~~~~LlvlDdv~~~~~~-------~~l~~~~~~~-~~gs~iivTtR~~~v~~~ 297 (1053)
.+. ..++.|++||+.....+. .++...+... ..+..+|+||.+.+.+..
T Consensus 102 ~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~ 159 (213)
T cd03281 102 ALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNR 159 (213)
T ss_pred HHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHh
Confidence 221 367899999998654321 1122222222 234579999999887764
No 331
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=95.07 E-value=0.17 Score=50.52 Aligned_cols=96 Identities=21% Similarity=0.221 Sum_probs=57.8
Q ss_pred CCcccccchHHHHHHHHHHhc-------------CCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCc
Q 037851 150 KGYEAFESRMSTLKSLQNALL-------------DPDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTP 216 (1053)
Q Consensus 150 ~~~~~~~gR~~~~~~l~~~l~-------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 216 (1053)
....++-|-+-.++++.+... -+.++-|.++|++|.|||.||++|++.-. ..| +.|-..
T Consensus 152 vsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~--a~f-----irvvgs- 223 (408)
T KOG0727|consen 152 VSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTT--AAF-----IRVVGS- 223 (408)
T ss_pred ccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccc--hhe-----eeeccH-
Confidence 334455666666666665543 12457788999999999999999998755 223 333221
Q ss_pred CHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCc
Q 037851 217 DIKKVQGELADQLGMQFDEESDVPGRARKLYARLQKENKILIILDNIWED 266 (1053)
Q Consensus 217 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~ 266 (1053)
++.+ +.+|... ..+..+.+--+++-+.+|++|.++..
T Consensus 224 ---efvq---kylgegp-------rmvrdvfrlakenapsiifideidai 260 (408)
T KOG0727|consen 224 ---EFVQ---KYLGEGP-------RMVRDVFRLAKENAPSIIFIDEIDAI 260 (408)
T ss_pred ---HHHH---HHhccCc-------HHHHHHHHHHhccCCcEEEeehhhhH
Confidence 1111 1222211 33444555455678889999998643
No 332
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=95.07 E-value=0.55 Score=47.25 Aligned_cols=52 Identities=21% Similarity=0.262 Sum_probs=40.8
Q ss_pred CCCCcccccchHHHHHHHHHHhcC-------------CCeeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 148 SGKGYEAFESRMSTLKSLQNALLD-------------PDVTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 148 ~~~~~~~~~gR~~~~~~l~~~l~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
|...+..+-|-++.++++++++.- ..++-+..+|++|.|||-+|++.+..-.
T Consensus 166 PtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~ 230 (424)
T KOG0652|consen 166 PTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTN 230 (424)
T ss_pred CcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhcc
Confidence 445566788899999999987641 1346788999999999999999987643
No 333
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=95.05 E-value=0.37 Score=53.00 Aligned_cols=44 Identities=14% Similarity=0.112 Sum_probs=30.4
Q ss_pred cchHHHHHHHHHHhc--CCCeeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 156 ESRMSTLKSLQNALL--DPDVTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 156 ~gR~~~~~~l~~~l~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
+|+...+.++.+.+. ...-.-|.|+|..|+||+++|+.+++...
T Consensus 2 iG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~ 47 (329)
T TIGR02974 2 IGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSK 47 (329)
T ss_pred CcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhcC
Confidence 455555555554443 12335678999999999999999987643
No 334
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.04 E-value=0.072 Score=54.11 Aligned_cols=96 Identities=22% Similarity=0.371 Sum_probs=58.0
Q ss_pred HHHHhc-CCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCC-cCHHHHHHHHHHHhCC-------CCCC
Q 037851 165 LQNALL-DPDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDT-PDIKKVQGELADQLGM-------QFDE 235 (1053)
Q Consensus 165 l~~~l~-~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~-------~~~~ 235 (1053)
.++.+. =.+..-++|.|.+|+|||+|+..+.+... -+.++++-+.+. ....++.+++...-.. ...+
T Consensus 5 ~ID~l~Pig~Gqr~~I~g~~g~GKt~Ll~~i~~~~~----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~ 80 (215)
T PF00006_consen 5 AIDLLFPIGRGQRIGIFGGAGVGKTVLLQEIANNQD----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSD 80 (215)
T ss_dssp HHHHHSCEETTSEEEEEESTTSSHHHHHHHHHHHCT----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETT
T ss_pred eeccccccccCCEEEEEcCcccccchhhHHHHhccc----ccceeeeeccccchhHHHHHHHHhhcccccccccccccch
Confidence 345554 12335789999999999999999998864 355688888765 4566666666433111 1111
Q ss_pred CCChhH-----HHHHHHHHHh-cCCcEEEEEcCCC
Q 037851 236 ESDVPG-----RARKLYARLQ-KENKILIILDNIW 264 (1053)
Q Consensus 236 ~~~~~~-----~~~~l~~~l~-~~~~~LlvlDdv~ 264 (1053)
++.... ..-.+-+++. +++.+|+++||+.
T Consensus 81 ~~~~~r~~~~~~a~t~AEyfrd~G~dVlli~Dslt 115 (215)
T PF00006_consen 81 EPPAARYRAPYTALTIAEYFRDQGKDVLLIIDSLT 115 (215)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHTTSEEEEEEETHH
T ss_pred hhHHHHhhhhccchhhhHHHhhcCCceeehhhhhH
Confidence 111101 1122333333 5899999999984
No 335
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.01 E-value=0.12 Score=59.87 Aligned_cols=172 Identities=19% Similarity=0.236 Sum_probs=94.0
Q ss_pred cccccchHHHH---HHHHHHhcCCC---------eeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHH
Q 037851 152 YEAFESRMSTL---KSLQNALLDPD---------VTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIK 219 (1053)
Q Consensus 152 ~~~~~gR~~~~---~~l~~~l~~~~---------~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 219 (1053)
..++.|.++.+ .++++.|.++. ++=|..+|++|.|||.||++++....+- |++.|...-+
T Consensus 149 F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VP-------Ff~iSGS~FV- 220 (596)
T COG0465 149 FADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP-------FFSISGSDFV- 220 (596)
T ss_pred hhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCC-------ceeccchhhh-
Confidence 44566766555 45566666542 4678899999999999999999887642 2222322111
Q ss_pred HHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCcc----------------chhhhcCCCCCCC--C
Q 037851 220 KVQGELADQLGMQFDEESDVPGRARKLYARLQKENKILIILDNIWEDL----------------DLEKVGVPSGNDC--R 281 (1053)
Q Consensus 220 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~----------------~~~~l~~~~~~~~--~ 281 (1053)
++.- +.. ...++.+...-+++-+++|++|.++... .+..+.......+ .
T Consensus 221 ----emfV--GvG-------AsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~ 287 (596)
T COG0465 221 ----EMFV--GVG-------ASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNE 287 (596)
T ss_pred ----hhhc--CCC-------cHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCC
Confidence 0110 110 1344555555555678999999886431 1223333332222 3
Q ss_pred CcEEEEEecChHHHHh----hC--CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCch
Q 037851 282 GCKVLLTARDRHVLES----IG--SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPI 346 (1053)
Q Consensus 282 gs~iivTtR~~~v~~~----~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPl 346 (1053)
|-.|+..|--++|.+. -+ +..+.++.-+-..-.++++-++....-.++ .+ ...|++.+-|.-.
T Consensus 288 gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~-Vd-l~~iAr~tpGfsG 356 (596)
T COG0465 288 GVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAED-VD-LKKIARGTPGFSG 356 (596)
T ss_pred ceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCc-CC-HHHHhhhCCCccc
Confidence 4444444554555542 22 556666666667777777766643222211 11 2237777766543
No 336
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.99 E-value=0.092 Score=58.36 Aligned_cols=86 Identities=22% Similarity=0.312 Sum_probs=52.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhCCCCCCCC-ChhHHHHHHHHHHhc
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLGMQFDEES-DVPGRARKLYARLQK 252 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~l~~~l~~ 252 (1053)
..++.|.|.+|+|||||+.+++...... -..++|++..+. ..++ +.-++.++...+... ..+.....+.+.+..
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~--g~~VlYvs~EEs--~~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~ 156 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKR--GGKVLYVSGEES--PEQI-KLRADRLGISTENLYLLAETNLEDILASIEE 156 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCcC--HHHH-HHHHHHcCCCcccEEEEccCcHHHHHHHHHh
Confidence 4799999999999999999999877632 246788876543 3333 233455554322110 001123445555544
Q ss_pred CCcEEEEEcCCC
Q 037851 253 ENKILIILDNIW 264 (1053)
Q Consensus 253 ~~~~LlvlDdv~ 264 (1053)
.+.-+||+|.+.
T Consensus 157 ~~~~lVVIDSIq 168 (372)
T cd01121 157 LKPDLVIIDSIQ 168 (372)
T ss_pred cCCcEEEEcchH
Confidence 567788899883
No 337
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.98 E-value=0.061 Score=55.94 Aligned_cols=27 Identities=30% Similarity=0.406 Sum_probs=24.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhc
Q 037851 175 TITGVYGMGGLGKTTLVKEVARQVKKD 201 (1053)
Q Consensus 175 ~vi~I~G~~GiGKTtLa~~v~~~~~~~ 201 (1053)
++|.++|++|.|||+|.++++++..++
T Consensus 178 RliLlhGPPGTGKTSLCKaLaQkLSIR 204 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTSLCKALAQKLSIR 204 (423)
T ss_pred eEEEEeCCCCCChhHHHHHHHHhheee
Confidence 899999999999999999999997653
No 338
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.98 E-value=0.23 Score=56.13 Aligned_cols=90 Identities=22% Similarity=0.215 Sum_probs=49.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCc-CHHHHHHHHHHHhCCCCCC---CCChhHHHHHHHH
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTP-DIKKVQGELADQLGMQFDE---ESDVPGRARKLYA 248 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l~~ 248 (1053)
.+.++.++|.+|+||||.|..++.....+..+ .++.|++.... ...+.++...++.+.+... ..+.........+
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~-kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~ 176 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGK-KVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALE 176 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCC-eEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHH
Confidence 36799999999999999999998886422222 34445544321 2233344455555543221 1122233333333
Q ss_pred HHhcCCcE-EEEEcCCC
Q 037851 249 RLQKENKI-LIILDNIW 264 (1053)
Q Consensus 249 ~l~~~~~~-LlvlDdv~ 264 (1053)
... .+.| +||+|-.-
T Consensus 177 ~~~-~~~~DvVIIDTaG 192 (428)
T TIGR00959 177 YAK-ENGFDVVIVDTAG 192 (428)
T ss_pred HHH-hcCCCEEEEeCCC
Confidence 332 2334 67777764
No 339
>PRK13531 regulatory ATPase RavA; Provisional
Probab=94.97 E-value=0.037 Score=62.42 Aligned_cols=49 Identities=14% Similarity=0.211 Sum_probs=40.0
Q ss_pred cccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCC
Q 037851 154 AFESRMSTLKSLQNALLDPDVTITGVYGMGGLGKTTLVKEVARQVKKDKHF 204 (1053)
Q Consensus 154 ~~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f 204 (1053)
.++||++.++.+...+..+ .-|.|.|++|+|||++|+.+.........|
T Consensus 21 ~i~gre~vI~lll~aalag--~hVLL~GpPGTGKT~LAraLa~~~~~~~~F 69 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQNARAF 69 (498)
T ss_pred hccCcHHHHHHHHHHHccC--CCEEEECCCChhHHHHHHHHHHHhcccCcc
Confidence 5789999999998887644 467899999999999999999876533334
No 340
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.97 E-value=0.022 Score=46.16 Aligned_cols=23 Identities=39% Similarity=0.614 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 037851 176 ITGVYGMGGLGKTTLVKEVARQV 198 (1053)
Q Consensus 176 vi~I~G~~GiGKTtLa~~v~~~~ 198 (1053)
+|+|.|..|+||||+|+.+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999886
No 341
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.95 E-value=0.14 Score=53.57 Aligned_cols=49 Identities=18% Similarity=0.161 Sum_probs=35.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHH
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGEL 225 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 225 (1053)
...++.|+|.+|+|||++|.++...... .=..++|++..+. ..++.+.+
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~--~g~~~~y~~~e~~--~~~~~~~~ 72 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALK--QGKKVYVITTENT--SKSYLKQM 72 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHh--CCCEEEEEEcCCC--HHHHHHHH
Confidence 4579999999999999999999765432 2346888888654 44555543
No 342
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.95 E-value=0.11 Score=53.53 Aligned_cols=122 Identities=22% Similarity=0.229 Sum_probs=71.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcC-----CcCHHHHHHHHHHHhCCCCC------CCCChhH
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSD-----TPDIKKVQGELADQLGMQFD------EESDVPG 241 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-----~~~~~~~~~~i~~~l~~~~~------~~~~~~~ 241 (1053)
+..+++|+|.+|.||||+|+.+..-... -.+.+++.-.+ .....+-..++++.++...+ .+-.-.+
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~p---t~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEEP---TSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcCC---CCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 4579999999999999999999876542 23444443221 22344556677777664321 1111112
Q ss_pred HHHH-HHHHHhcCCcEEEEEcCCCCccch------hhhcCCCCCCCCCcEEEEEecChHHHHhhC
Q 037851 242 RARK-LYARLQKENKILIILDNIWEDLDL------EKVGVPSGNDCRGCKVLLTARDRHVLESIG 299 (1053)
Q Consensus 242 ~~~~-l~~~l~~~~~~LlvlDdv~~~~~~------~~l~~~~~~~~~gs~iivTtR~~~v~~~~~ 299 (1053)
.... +.+.+ .-++-++|.|+.-+..+. -.+...+ ....|-..++.|.+-.++..+.
T Consensus 115 rQRi~IARAL-al~P~liV~DEpvSaLDvSiqaqIlnLL~dl-q~~~~lt~lFIsHDL~vv~~is 177 (268)
T COG4608 115 RQRIGIARAL-ALNPKLIVADEPVSALDVSVQAQILNLLKDL-QEELGLTYLFISHDLSVVRYIS 177 (268)
T ss_pred hhhHHHHHHH-hhCCcEEEecCchhhcchhHHHHHHHHHHHH-HHHhCCeEEEEEEEHHhhhhhc
Confidence 2222 33344 478899999997554221 1111111 1223667889999888887765
No 343
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=94.94 E-value=0.28 Score=46.93 Aligned_cols=117 Identities=23% Similarity=0.176 Sum_probs=61.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCC---cCHHHHHHHHH----HHhCCCC--CCCCChh-----
Q 037851 175 TITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDT---PDIKKVQGELA----DQLGMQF--DEESDVP----- 240 (1053)
Q Consensus 175 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~---~~~~~~~~~i~----~~l~~~~--~~~~~~~----- 240 (1053)
..|-|++..|.||||+|-..+-+....+ -.+.++.+-+. .....+++.+- .+.+... ......+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g--~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~a 80 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHG--YRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAAA 80 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHHH
Confidence 4788888899999999999988766332 24555544333 23333333320 0001110 0011110
Q ss_pred -HHHHHHHHHHhcCCcEEEEEcCCCCc-----cchhhhcCCCCCCCCCcEEEEEecChH
Q 037851 241 -GRARKLYARLQKENKILIILDNIWED-----LDLEKVGVPSGNDCRGCKVLLTARDRH 293 (1053)
Q Consensus 241 -~~~~~l~~~l~~~~~~LlvlDdv~~~-----~~~~~l~~~~~~~~~gs~iivTtR~~~ 293 (1053)
.......+.+..++-=|||||++-.. ...+.+...+.....+.-||+|.|+..
T Consensus 81 ~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 81 AEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 11222333343456679999998543 223333333333334668999999864
No 344
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=94.94 E-value=0.12 Score=56.97 Aligned_cols=60 Identities=8% Similarity=0.080 Sum_probs=39.8
Q ss_pred cccchHHHHHHHHHHhc--CCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCC
Q 037851 154 AFESRMSTLKSLQNALL--DPDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDT 215 (1053)
Q Consensus 154 ~~~gR~~~~~~l~~~l~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~ 215 (1053)
.++|+...+.++.+.+. .....-|.|+|..|+||+++|+.+...... .-...+.|++...
T Consensus 7 ~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r--~~~pfv~v~c~~~ 68 (326)
T PRK11608 7 NLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSSR--WQGPFISLNCAAL 68 (326)
T ss_pred ccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhCCc--cCCCeEEEeCCCC
Confidence 47788777777776654 223356789999999999999999864331 1123344555543
No 345
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.91 E-value=0.1 Score=51.32 Aligned_cols=113 Identities=24% Similarity=0.243 Sum_probs=58.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhh---cCC---CC--eEEEEEEcCCcCHHHHHHHHHHHhCCCCC---CC-C--C
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKK---DKH---FD--EVVFAEVSDTPDIKKVQGELADQLGMQFD---EE-S--D 238 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~---~~~---f~--~~~wv~~s~~~~~~~~~~~i~~~l~~~~~---~~-~--~ 238 (1053)
...+++|+|+.|.|||||.+.+..+... ... |. .+.|+ .+ .+.++.++.... .. . .
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LS 89 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLS 89 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCC
Confidence 3469999999999999999998642110 000 10 12232 11 355666664321 11 1 1
Q ss_pred hh-HHHHHHHHHHhcCC--cEEEEEcCCCCccc---hhhhcCCCCC-CCCCcEEEEEecChHHHH
Q 037851 239 VP-GRARKLYARLQKEN--KILIILDNIWEDLD---LEKVGVPSGN-DCRGCKVLLTARDRHVLE 296 (1053)
Q Consensus 239 ~~-~~~~~l~~~l~~~~--~~LlvlDdv~~~~~---~~~l~~~~~~-~~~gs~iivTtR~~~v~~ 296 (1053)
.. ...-.+.+.+. .+ +-++++|+.-..-+ .+.+...+.. ...|..||++|.+.+...
T Consensus 90 gGq~qrl~laral~-~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~ 153 (176)
T cd03238 90 GGELQRVKLASELF-SEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS 153 (176)
T ss_pred HHHHHHHHHHHHHh-hCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 11 11122334443 45 77888999754422 1222111111 114667999999887654
No 346
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=94.91 E-value=0.38 Score=55.96 Aligned_cols=132 Identities=20% Similarity=0.279 Sum_probs=72.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhc-C-----CCCeEEEEEEcCCc-----CH------------HHHHHHHHHHhC
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVKKD-K-----HFDEVVFAEVSDTP-----DI------------KKVQGELADQLG 230 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~-----~f~~~~wv~~s~~~-----~~------------~~~~~~i~~~l~ 230 (1053)
...|+|+|+.|+|||||.+.+....... + .--.+.|++-.... ++ ..-.+..+..++
T Consensus 348 g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~ 427 (530)
T COG0488 348 GDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFG 427 (530)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcC
Confidence 4689999999999999999997765422 1 11113333322210 11 233333444443
Q ss_pred CCCCCCC------ChhHHHHHHHHHHhcCCcEEEEEcCCCCccch---hhhcCCCCCCCCCcEEEEEecChHHHHhhCCC
Q 037851 231 MQFDEES------DVPGRARKLYARLQKENKILIILDNIWEDLDL---EKVGVPSGNDCRGCKVLLTARDRHVLESIGSK 301 (1053)
Q Consensus 231 ~~~~~~~------~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~~---~~l~~~~~~~~~gs~iivTtR~~~v~~~~~~~ 301 (1053)
-..+... +-.+..+-....+.-.++-+||||.--+.-+. +.+..++... +| .||+.|.++.+.......
T Consensus 428 F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f-~G-tvl~VSHDr~Fl~~va~~ 505 (530)
T COG0488 428 FTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF-EG-TVLLVSHDRYFLDRVATR 505 (530)
T ss_pred CChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC-CC-eEEEEeCCHHHHHhhcce
Confidence 3322211 11122333344444578899999987665332 2222222221 24 499999999998877666
Q ss_pred cccccC
Q 037851 302 TLRIDV 307 (1053)
Q Consensus 302 ~~~l~~ 307 (1053)
++.+++
T Consensus 506 i~~~~~ 511 (530)
T COG0488 506 IWLVED 511 (530)
T ss_pred EEEEcC
Confidence 666553
No 347
>PRK04328 hypothetical protein; Provisional
Probab=94.90 E-value=0.12 Score=54.42 Aligned_cols=41 Identities=12% Similarity=0.173 Sum_probs=31.9
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCC
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDT 215 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~ 215 (1053)
...++.|.|.+|.|||+||.++...... .-..++|++..+.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~--~ge~~lyis~ee~ 62 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQ--MGEPGVYVALEEH 62 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh--cCCcEEEEEeeCC
Confidence 4579999999999999999998766432 2356788888764
No 348
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=94.88 E-value=0.15 Score=55.85 Aligned_cols=58 Identities=24% Similarity=0.382 Sum_probs=42.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhcC----CCCeEEEEEEcCCcCHHHHHHHHHHHhCC
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKKDK----HFDEVVFAEVSDTPDIKKVQGELADQLGM 231 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 231 (1053)
...++-|+|.+|+||||++.+++....... .-..++||+....++...+. ++++.++.
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~gl 155 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARGL 155 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcCC
Confidence 357899999999999999999987754211 11378999998888877654 45555543
No 349
>PRK05439 pantothenate kinase; Provisional
Probab=94.87 E-value=0.18 Score=54.19 Aligned_cols=28 Identities=21% Similarity=0.256 Sum_probs=24.6
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 172 PDVTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 172 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
...-+|+|.|.+|+||||+|+.+.....
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~ 111 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLS 111 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567999999999999999999988664
No 350
>PTZ00035 Rad51 protein; Provisional
Probab=94.85 E-value=0.15 Score=56.00 Aligned_cols=58 Identities=19% Similarity=0.316 Sum_probs=41.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhh---c-CCCCeEEEEEEcCCcCHHHHHHHHHHHhCC
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKK---D-KHFDEVVFAEVSDTPDIKKVQGELADQLGM 231 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~---~-~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 231 (1053)
...++.|+|..|+|||||+..++-.... . ..-..++|++....++..++ .++++.++.
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~ 178 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGL 178 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCC
Confidence 3579999999999999999988755431 0 11235779998877777664 555666554
No 351
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.84 E-value=0.16 Score=51.14 Aligned_cols=95 Identities=20% Similarity=0.258 Sum_probs=57.4
Q ss_pred CCCcccccchHHHHHHHHHHhc----C---------CCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCC
Q 037851 149 GKGYEAFESRMSTLKSLQNALL----D---------PDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDT 215 (1053)
Q Consensus 149 ~~~~~~~~gR~~~~~~l~~~l~----~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~ 215 (1053)
...+.++-|-.++++++.+... . +.++-|..+|++|.|||-+|++|+|+-. ..| +.|-.
T Consensus 173 dvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtd--acf-----irvig- 244 (435)
T KOG0729|consen 173 DVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTD--ACF-----IRVIG- 244 (435)
T ss_pred CcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccC--ceE-----Eeehh-
Confidence 3445566777788887766543 1 2356788999999999999999998654 223 33221
Q ss_pred cCHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCC
Q 037851 216 PDIKKVQGELADQLGMQFDEESDVPGRARKLYARLQKENKILIILDNIW 264 (1053)
Q Consensus 216 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~ 264 (1053)
.++.+.--+ .-...+.++.+--+..|-++|++|.++
T Consensus 245 -------selvqkyvg------egarmvrelf~martkkaciiffdeid 280 (435)
T KOG0729|consen 245 -------SELVQKYVG------EGARMVRELFEMARTKKACIIFFDEID 280 (435)
T ss_pred -------HHHHHHHhh------hhHHHHHHHHHHhcccceEEEEeeccc
Confidence 112211100 001334555555545667888899885
No 352
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.81 E-value=0.021 Score=60.75 Aligned_cols=88 Identities=18% Similarity=0.273 Sum_probs=48.3
Q ss_pred HHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhCCCCCCCCChhHH
Q 037851 163 KSLQNALLDPDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLGMQFDEESDVPGR 242 (1053)
Q Consensus 163 ~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 242 (1053)
..+++.+...+ +-+.++|+.|+|||++++...+..... .| ...-++.+...+...+++.+-..+.......-..
T Consensus 23 ~~ll~~l~~~~-~pvLl~G~~GtGKT~li~~~l~~l~~~-~~-~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~~~gP--- 96 (272)
T PF12775_consen 23 SYLLDLLLSNG-RPVLLVGPSGTGKTSLIQNFLSSLDSD-KY-LVITINFSAQTTSNQLQKIIESKLEKRRGRVYGP--- 96 (272)
T ss_dssp HHHHHHHHHCT-EEEEEESSTTSSHHHHHHHHHHCSTTC-CE-EEEEEES-TTHHHHHHHHCCCTTECECTTEEEEE---
T ss_pred HHHHHHHHHcC-CcEEEECCCCCchhHHHHhhhccCCcc-cc-ceeEeeccCCCCHHHHHHHHhhcEEcCCCCCCCC---
Confidence 44555555444 456899999999999999988654321 11 2344555555444444332222111110000000
Q ss_pred HHHHHHHHhcCCcEEEEEcCCC
Q 037851 243 ARKLYARLQKENKILIILDNIW 264 (1053)
Q Consensus 243 ~~~l~~~l~~~~~~LlvlDdv~ 264 (1053)
..+|+.++++||+.
T Consensus 97 --------~~~k~lv~fiDDlN 110 (272)
T PF12775_consen 97 --------PGGKKLVLFIDDLN 110 (272)
T ss_dssp --------ESSSEEEEEEETTT
T ss_pred --------CCCcEEEEEecccC
Confidence 03788999999984
No 353
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=94.81 E-value=0.2 Score=52.73 Aligned_cols=89 Identities=21% Similarity=0.305 Sum_probs=55.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHH-hCCCCCCCCChhHHHHHHHHHHh
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQ-LGMQFDEESDVPGRARKLYARLQ 251 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~-l~~~~~~~~~~~~~~~~l~~~l~ 251 (1053)
..+++=|+|+.|.||||+|.+++-... ..-..++|++.-..+++..+. ++... +..-.-...+..+....+.+.+.
T Consensus 59 ~g~ItEiyG~~gsGKT~lal~~~~~aq--~~g~~a~fIDtE~~l~p~r~~-~l~~~~~d~l~v~~~~~~e~q~~i~~~~~ 135 (279)
T COG0468 59 RGRITEIYGPESSGKTTLALQLVANAQ--KPGGKAAFIDTEHALDPERAK-QLGVDLLDNLLVSQPDTGEQQLEIAEKLA 135 (279)
T ss_pred cceEEEEecCCCcchhhHHHHHHHHhh--cCCCeEEEEeCCCCCCHHHHH-HHHHhhhcceeEecCCCHHHHHHHHHHHH
Confidence 457899999999999999999887665 233478999999998877663 34433 22111111121122223333332
Q ss_pred ---cCCcEEEEEcCCC
Q 037851 252 ---KENKILIILDNIW 264 (1053)
Q Consensus 252 ---~~~~~LlvlDdv~ 264 (1053)
..+--|+|+|.+-
T Consensus 136 ~~~~~~i~LvVVDSva 151 (279)
T COG0468 136 RSGAEKIDLLVVDSVA 151 (279)
T ss_pred HhccCCCCEEEEecCc
Confidence 1235688888874
No 354
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.80 E-value=0.038 Score=54.03 Aligned_cols=123 Identities=17% Similarity=0.212 Sum_probs=62.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCC--cCHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHH
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDT--PDIKKVQGELADQLGMQFDEESDVPGRARKLYARL 250 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 250 (1053)
...+++|+|..|.|||||.+.++.... ...+.+++.-... .+..+.. .+.++.... -+.-+...-.+.+.+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~v~~~g~~~~~~~~~~~~---~~~i~~~~q-LS~G~~qrl~laral 97 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLYK---PDSGEILVDGKEVSFASPRDAR---RAGIAMVYQ-LSVGERQMVEIARAL 97 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEECCcCCHHHHH---hcCeEEEEe-cCHHHHHHHHHHHHH
Confidence 346999999999999999999986543 2345555432111 1111111 111111100 111111222333444
Q ss_pred hcCCcEEEEEcCCCCccc---hhhhcCCCCC-CCCCcEEEEEecChHHHHhhCCCcc
Q 037851 251 QKENKILIILDNIWEDLD---LEKVGVPSGN-DCRGCKVLLTARDRHVLESIGSKTL 303 (1053)
Q Consensus 251 ~~~~~~LlvlDdv~~~~~---~~~l~~~~~~-~~~gs~iivTtR~~~v~~~~~~~~~ 303 (1053)
. .++-++++|+....-+ ...+...+.. ...|..||++|.+.+.........+
T Consensus 98 ~-~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~ 153 (163)
T cd03216 98 A-RNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVT 153 (163)
T ss_pred h-cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEE
Confidence 3 6788999999865422 1222221111 1236678999998775544333333
No 355
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.79 E-value=0.13 Score=54.49 Aligned_cols=41 Identities=20% Similarity=0.343 Sum_probs=31.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCC
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDT 215 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~ 215 (1053)
...++.|.|.+|+|||++|.+++.....+ =..++|++....
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~--Ge~vlyis~Ee~ 75 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASR--GNPVLFVTVESP 75 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhC--CCcEEEEEecCC
Confidence 34799999999999999999987765422 246788888643
No 356
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=94.78 E-value=0.33 Score=59.58 Aligned_cols=62 Identities=11% Similarity=0.170 Sum_probs=42.1
Q ss_pred cccccchHHHHHHHHHHhc--CCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCC
Q 037851 152 YEAFESRMSTLKSLQNALL--DPDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDT 215 (1053)
Q Consensus 152 ~~~~~gR~~~~~~l~~~l~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~ 215 (1053)
...++|+...+..+.+.+. .....-|.|+|..|+|||++|+.+++.... .-...+.+++...
T Consensus 375 ~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r--~~~~~v~i~c~~~ 438 (686)
T PRK15429 375 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGR--NNRRMVKMNCAAM 438 (686)
T ss_pred ccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCC--CCCCeEEEecccC
Confidence 3467888877777765543 223357889999999999999999886532 1223455555543
No 357
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.74 E-value=0.03 Score=57.45 Aligned_cols=27 Identities=30% Similarity=0.469 Sum_probs=24.5
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHHHh
Q 037851 172 PDVTITGVYGMGGLGKTTLVKEVARQV 198 (1053)
Q Consensus 172 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 198 (1053)
.+..+|+|.|.+|+||||||+.++...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999999999999876
No 358
>PRK08233 hypothetical protein; Provisional
Probab=94.74 E-value=0.026 Score=56.48 Aligned_cols=26 Identities=31% Similarity=0.487 Sum_probs=23.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
..+|+|.|.+|+||||+|+.++....
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999998764
No 359
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=94.72 E-value=0.059 Score=55.86 Aligned_cols=65 Identities=23% Similarity=0.384 Sum_probs=48.9
Q ss_pred HHHHHHhc--CCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHH
Q 037851 163 KSLQNALL--DPDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELAD 227 (1053)
Q Consensus 163 ~~l~~~l~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 227 (1053)
.+++..+. .++..+|+|.|.+|+|||||.-.+...+..+++--.++=|+-|+.++--.++.+=.+
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiR 104 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIR 104 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhh
Confidence 34455444 456789999999999999999999999987777666777777887775555544433
No 360
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.72 E-value=0.073 Score=52.55 Aligned_cols=27 Identities=30% Similarity=0.353 Sum_probs=23.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
...+++|+|..|.|||||.+.++.-..
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~~ 53 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 346999999999999999999987643
No 361
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=94.70 E-value=0.072 Score=54.49 Aligned_cols=61 Identities=20% Similarity=0.270 Sum_probs=39.1
Q ss_pred HHHHHHHhc--CCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHH
Q 037851 162 LKSLQNALL--DPDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQ 222 (1053)
Q Consensus 162 ~~~l~~~l~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 222 (1053)
..++++.+. .++..+|+|.|++|+|||||...+...++.+++--.++=|+-|.+++--.++
T Consensus 15 ~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlL 77 (266)
T PF03308_consen 15 ARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALL 77 (266)
T ss_dssp HHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS
T ss_pred HHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCccc
Confidence 445555554 3467899999999999999999999998865554555656666666544443
No 362
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=94.70 E-value=0.15 Score=52.47 Aligned_cols=122 Identities=21% Similarity=0.277 Sum_probs=68.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhcC-----------CC---CeEEEEEEcCCc------CH---------------
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVKKDK-----------HF---DEVVFAEVSDTP------DI--------------- 218 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-----------~f---~~~~wv~~s~~~------~~--------------- 218 (1053)
..+++|+|+.|.|||||.+.+.--.+... .+ ..+.||.=.... ++
T Consensus 30 G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~ 109 (254)
T COG1121 30 GEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWF 109 (254)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCccccccc
Confidence 37999999999999999999987432100 01 235555321111 11
Q ss_pred -------HHHHHHHHHHhCCCCCCC-----CChhHHHHHHHHHHhcCCcEEEEEcCCCCc------cchhhhcCCCCCCC
Q 037851 219 -------KKVQGELADQLGMQFDEE-----SDVPGRARKLYARLQKENKILIILDNIWED------LDLEKVGVPSGNDC 280 (1053)
Q Consensus 219 -------~~~~~~i~~~l~~~~~~~-----~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~------~~~~~l~~~~~~~~ 280 (1053)
++...+.+++++...-.. -+-.+....+..+-..+++=|++||.--.. ....++...+...
T Consensus 110 ~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e- 188 (254)
T COG1121 110 RRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE- 188 (254)
T ss_pred ccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-
Confidence 244455555555432111 111123333333333578899999985433 2333444444333
Q ss_pred CCcEEEEEecChHHHHh
Q 037851 281 RGCKVLLTARDRHVLES 297 (1053)
Q Consensus 281 ~gs~iivTtR~~~v~~~ 297 (1053)
|..|+++|.|-.....
T Consensus 189 -g~tIl~vtHDL~~v~~ 204 (254)
T COG1121 189 -GKTVLMVTHDLGLVMA 204 (254)
T ss_pred -CCEEEEEeCCcHHhHh
Confidence 8889999998866554
No 363
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.69 E-value=0.026 Score=55.50 Aligned_cols=26 Identities=31% Similarity=0.473 Sum_probs=24.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
..+|+|-||=|+||||||+.++++..
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 46899999999999999999999886
No 364
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.68 E-value=0.032 Score=57.11 Aligned_cols=28 Identities=36% Similarity=0.555 Sum_probs=24.6
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 172 PDVTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 172 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
+...+|+|+|++|+||||||+.++....
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3457999999999999999999998764
No 365
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=94.66 E-value=0.18 Score=60.02 Aligned_cols=64 Identities=9% Similarity=0.099 Sum_probs=43.6
Q ss_pred CCcccccchHHHHHHHHHHhc--CCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCC
Q 037851 150 KGYEAFESRMSTLKSLQNALL--DPDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDT 215 (1053)
Q Consensus 150 ~~~~~~~gR~~~~~~l~~~l~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~ 215 (1053)
.....++|+...+.++.+.+. ......|.|+|..|+|||++|+.+++..... -...+.|++...
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~--~~pfv~i~c~~~ 258 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPRA--KRPFVKVNCAAL 258 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCCCC--CCCeEEeecCCC
Confidence 344578898888888877664 2233466799999999999999999865411 122344555543
No 366
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=94.63 E-value=0.015 Score=55.11 Aligned_cols=43 Identities=19% Similarity=0.281 Sum_probs=28.4
Q ss_pred chHHHHHHHHHHhc--CCCeeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 157 SRMSTLKSLQNALL--DPDVTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 157 gR~~~~~~l~~~l~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
|+-..++++.+.+. ......|.|+|..|+||+++|+.++....
T Consensus 2 G~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~ 46 (138)
T PF14532_consen 2 GKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSG 46 (138)
T ss_dssp -SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTT
T ss_pred CCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcC
Confidence 44444555544443 12335678999999999999999988654
No 367
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.63 E-value=0.11 Score=52.23 Aligned_cols=45 Identities=16% Similarity=0.120 Sum_probs=31.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHH
Q 037851 176 ITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGE 224 (1053)
Q Consensus 176 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 224 (1053)
++.|.|.+|+|||++|.+++...... =..++|++... +..++...
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~--g~~v~~~s~e~--~~~~~~~~ 45 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLAR--GEPGLYVTLEE--SPEELIEN 45 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHC--CCcEEEEECCC--CHHHHHHH
Confidence 36799999999999999988775422 24577887654 34444433
No 368
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=94.61 E-value=0.15 Score=51.50 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 037851 175 TITGVYGMGGLGKTTLVKEVARQV 198 (1053)
Q Consensus 175 ~vi~I~G~~GiGKTtLa~~v~~~~ 198 (1053)
++++|+|+.|.|||||.+.+.-..
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHH
Confidence 799999999999999999998654
No 369
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.59 E-value=0.005 Score=59.55 Aligned_cols=88 Identities=17% Similarity=0.243 Sum_probs=58.6
Q ss_pred ccceEeecccccceeccCCccccccccCCcccEEEEecCccccccccchhHhhhccCcEEEEecccccceeecccCcccc
Q 037851 914 NLEVLEVRDLNVAKIWHNQFSAAMSCNVQNLTRLVVLDCHKLRYVFSYSTAKRLGQLKHLVISRCPLLEEIVGKEGGVEA 993 (1053)
Q Consensus 914 ~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~l~~l~sL~~L~i~~c~~l~~i~~~~~~~~~ 993 (1053)
.++.++-+++.+..+.- +-+..+++++.|.+.+|..+.+--....-+-.++|+.|+|++|+.|++. |+.
T Consensus 102 ~IeaVDAsds~I~~eGl-----e~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~-----GL~- 170 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGL-----EHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDG-----GLA- 170 (221)
T ss_pred eEEEEecCCchHHHHHH-----HHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechh-----HHH-
Confidence 35666666665543221 2245678888899999988776533323335689999999999988755 221
Q ss_pred CCcccccccCcccccccccc
Q 037851 994 DPSFVFPQLTILKLSSLPEL 1013 (1053)
Q Consensus 994 ~~~~~~p~L~~L~l~~c~~L 1013 (1053)
....+++|+.|.+.++|..
T Consensus 171 -~L~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 171 -CLLKLKNLRRLHLYDLPYV 189 (221)
T ss_pred -HHHHhhhhHHHHhcCchhh
Confidence 2345788888888887754
No 370
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.58 E-value=0.032 Score=53.23 Aligned_cols=24 Identities=33% Similarity=0.510 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 176 ITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 176 vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
+|.++|++|+||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 688999999999999999987654
No 371
>PRK06762 hypothetical protein; Provisional
Probab=94.55 E-value=0.033 Score=54.71 Aligned_cols=25 Identities=32% Similarity=0.517 Sum_probs=22.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHh
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQV 198 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~ 198 (1053)
..+|.|+|+.|+||||+|+.+.+..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999876
No 372
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=94.54 E-value=0.22 Score=50.27 Aligned_cols=41 Identities=29% Similarity=0.483 Sum_probs=29.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhcCCC--------CeEEEEEEcCC
Q 037851 175 TITGVYGMGGLGKTTLVKEVARQVKKDKHF--------DEVVFAEVSDT 215 (1053)
Q Consensus 175 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f--------~~~~wv~~s~~ 215 (1053)
.++.|+|.+|+||||++..++........| ..++|++....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 588999999999999999999887653333 25778877665
No 373
>PTZ00301 uridine kinase; Provisional
Probab=94.52 E-value=0.035 Score=56.31 Aligned_cols=26 Identities=27% Similarity=0.584 Sum_probs=23.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
..+|+|.|.+|.||||+|+.+.+...
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHH
Confidence 46899999999999999999988764
No 374
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=94.51 E-value=0.038 Score=55.20 Aligned_cols=28 Identities=43% Similarity=0.604 Sum_probs=25.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhh
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKK 200 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 200 (1053)
++.+|+|.|.+|.||||+|+.++..+..
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~~ 34 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLGV 34 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhCc
Confidence 4579999999999999999999998874
No 375
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.49 E-value=0.098 Score=59.27 Aligned_cols=93 Identities=24% Similarity=0.338 Sum_probs=60.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCc-CHHHHHHHHHHHhCCC-------CCCCCCh-----
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTP-DIKKVQGELADQLGMQ-------FDEESDV----- 239 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~~~~~~----- 239 (1053)
+..-++|.|.+|+|||||+.++.+..... +-+.++++-+.+.. ...++..++...-... ..+++..
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~~~-~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a 220 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNISKQ-HSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRV 220 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhh-CCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHH
Confidence 44689999999999999999999887643 56788888777654 4566666665432111 1111111
Q ss_pred hHHHHHHHHHHh-c-CCcEEEEEcCCCCc
Q 037851 240 PGRARKLYARLQ-K-ENKILIILDNIWED 266 (1053)
Q Consensus 240 ~~~~~~l~~~l~-~-~~~~LlvlDdv~~~ 266 (1053)
...+..+-+++. + ++++|+++||+-..
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLl~~DslTR~ 249 (461)
T PRK12597 221 VLTGLTIAEYLRDEEKEDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHHHhcCCceEEEeccchHH
Confidence 112334455554 3 79999999999543
No 376
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.47 E-value=0.067 Score=52.69 Aligned_cols=24 Identities=33% Similarity=0.488 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 176 ITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 176 vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
.|.|.|.+|.||||+|+.+++...
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~ 25 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG 25 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999854
No 377
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.47 E-value=0.03 Score=50.20 Aligned_cols=24 Identities=46% Similarity=0.746 Sum_probs=21.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhh
Q 037851 177 TGVYGMGGLGKTTLVKEVARQVKK 200 (1053)
Q Consensus 177 i~I~G~~GiGKTtLa~~v~~~~~~ 200 (1053)
|.|+|.+|+|||++|+.++.+...
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~ 24 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLK 24 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHH
Confidence 579999999999999999888663
No 378
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=94.46 E-value=0.27 Score=51.45 Aligned_cols=94 Identities=19% Similarity=0.285 Sum_probs=60.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhh--hcCCCCeEEEEEEcCCc-CHHHHHHHHHHHhCCC-------CCCCCCh---
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVK--KDKHFDEVVFAEVSDTP-DIKKVQGELADQLGMQ-------FDEESDV--- 239 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~--~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~~~~~~--- 239 (1053)
+...++|.|-.|+|||+|+..+.+... .+..-+.++++-+.+.. ...++..++...-... ..+++..
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~ 147 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERI 147 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHH
Confidence 446789999999999999999987754 12234778899888764 4666766665542111 1111111
Q ss_pred --hHHHHHHHHHHh-c-CCcEEEEEcCCCCc
Q 037851 240 --PGRARKLYARLQ-K-ENKILIILDNIWED 266 (1053)
Q Consensus 240 --~~~~~~l~~~l~-~-~~~~LlvlDdv~~~ 266 (1053)
......+-+++. + ++++|+++||+-..
T Consensus 148 ~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~ 178 (276)
T cd01135 148 ITPRMALTTAEYLAYEKGKHVLVILTDMTNY 178 (276)
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEEcChhHH
Confidence 011234455554 2 79999999998654
No 379
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.46 E-value=0.11 Score=51.38 Aligned_cols=122 Identities=22% Similarity=0.184 Sum_probs=61.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhCCCCCC-----C--------CChh
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLGMQFDE-----E--------SDVP 240 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-----~--------~~~~ 240 (1053)
..+++|+|..|.|||||++.++.... ...+.+++.-....+.. ..+.+.++.-..+ . -...
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G 99 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLLK---PDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSGG 99 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCHH
Confidence 46899999999999999999987543 22344443211110000 1111111110000 0 0110
Q ss_pred H-HHHHHHHHHhcCCcEEEEEcCCCCccch---h---hhcCCCCCCCCCcEEEEEecChHHHHhhCCCccc
Q 037851 241 G-RARKLYARLQKENKILIILDNIWEDLDL---E---KVGVPSGNDCRGCKVLLTARDRHVLESIGSKTLR 304 (1053)
Q Consensus 241 ~-~~~~l~~~l~~~~~~LlvlDdv~~~~~~---~---~l~~~~~~~~~gs~iivTtR~~~v~~~~~~~~~~ 304 (1053)
+ ..-.+.+.+. .++=++++|+....-+. . .+...+.. .|..||++|.+........+..+.
T Consensus 100 ~~qrv~laral~-~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~--~g~tiii~th~~~~~~~~~d~i~~ 167 (173)
T cd03230 100 MKQRLALAQALL-HDPELLILDEPTSGLDPESRREFWELLRELKK--EGKTILLSSHILEEAERLCDRVAI 167 (173)
T ss_pred HHHHHHHHHHHH-cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH--CCCEEEEECCCHHHHHHhCCEEEE
Confidence 1 1122334443 67889999998654321 1 22222221 267799999888766544444433
No 380
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=94.46 E-value=0.049 Score=54.53 Aligned_cols=52 Identities=27% Similarity=0.374 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEE
Q 037851 158 RMSTLKSLQNALLDPDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAE 211 (1053)
Q Consensus 158 R~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~ 211 (1053)
+..+-...++.|. ...++.+.|++|.|||.||.+.+-+.-..+.|+.++++.
T Consensus 5 ~~~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~R 56 (205)
T PF02562_consen 5 KNEEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITR 56 (205)
T ss_dssp -SHHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE
T ss_pred CCHHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 3344555566665 456999999999999999999998766668898888764
No 381
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=94.45 E-value=0.25 Score=51.22 Aligned_cols=133 Identities=23% Similarity=0.310 Sum_probs=71.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCC----------------C-CeEEEEEEc----------------CC----
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKKDKH----------------F-DEVVFAEVS----------------DT---- 215 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----------------f-~~~~wv~~s----------------~~---- 215 (1053)
...+++|+|+.|+|||||.+.++.-.+.... + ..++||.-+ +.
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~ 106 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLG 106 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccc
Confidence 4579999999999999999999986542110 0 012222111 00
Q ss_pred ----cC--HHHHHHHHHHHhCCCCCC-----CCChhHHHHHHHHHHhcCCcEEEEEcCCCCccch------hhhcCCCCC
Q 037851 216 ----PD--IKKVQGELADQLGMQFDE-----ESDVPGRARKLYARLQKENKILIILDNIWEDLDL------EKVGVPSGN 278 (1053)
Q Consensus 216 ----~~--~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~~------~~l~~~~~~ 278 (1053)
.+ -.+...+.++.++...-. +-+-.+....+..+...++.=+++||+--+.-+. -++...+.
T Consensus 107 ~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~- 185 (258)
T COG1120 107 LFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLN- 185 (258)
T ss_pred cccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHH-
Confidence 01 122344445555442111 1111233333333333577888999986544221 11111111
Q ss_pred CCCCcEEEEEecChHHHHhhCCCccccc
Q 037851 279 DCRGCKVLLTARDRHVLESIGSKTLRID 306 (1053)
Q Consensus 279 ~~~gs~iivTtR~~~v~~~~~~~~~~l~ 306 (1053)
...|..||+++.+.+.|...+++.+-|+
T Consensus 186 ~~~~~tvv~vlHDlN~A~ryad~~i~lk 213 (258)
T COG1120 186 REKGLTVVMVLHDLNLAARYADHLILLK 213 (258)
T ss_pred HhcCCEEEEEecCHHHHHHhCCEEEEEE
Confidence 2347789999999998887665544443
No 382
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.45 E-value=0.3 Score=58.73 Aligned_cols=88 Identities=18% Similarity=0.220 Sum_probs=53.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCC-cCHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhc
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDT-PDIKKVQGELADQLGMQFDEESDVPGRARKLYARLQK 252 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 252 (1053)
.+++.++|+.|+||||.+.+++...........+..++.... ....+.++...+.++.......+... +....+.+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~-l~~al~~~~- 262 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAAD-LRFALAALG- 262 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHH-HHHHHHHhc-
Confidence 479999999999999999999887643222234555554422 22445666677777765543333322 333334442
Q ss_pred CCcEEEEEcCCC
Q 037851 253 ENKILIILDNIW 264 (1053)
Q Consensus 253 ~~~~LlvlDdv~ 264 (1053)
++ =+|++|-.-
T Consensus 263 ~~-D~VLIDTAG 273 (767)
T PRK14723 263 DK-HLVLIDTVG 273 (767)
T ss_pred CC-CEEEEeCCC
Confidence 33 477788775
No 383
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.43 E-value=0.16 Score=50.24 Aligned_cols=128 Identities=13% Similarity=0.175 Sum_probs=70.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEc-------------------CCc-----------------
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVS-------------------DTP----------------- 216 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s-------------------~~~----------------- 216 (1053)
+..|++|+|++|.|||||.+.+..-... -.+.+|+.-. +.+
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE~~---~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~ 103 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLEEP---DSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPV 103 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCcCC---CCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhH
Confidence 4479999999999999999988654321 2344554321 111
Q ss_pred --------CHHHHHHHHHHHhCCCCCCCC-----Chh-HHHHHHHHHHhcCCcEEEEEcCCCCccch---hhh---cCCC
Q 037851 217 --------DIKKVQGELADQLGMQFDEES-----DVP-GRARKLYARLQKENKILIILDNIWEDLDL---EKV---GVPS 276 (1053)
Q Consensus 217 --------~~~~~~~~i~~~l~~~~~~~~-----~~~-~~~~~l~~~l~~~~~~LlvlDdv~~~~~~---~~l---~~~~ 276 (1053)
..++...++++.+|....... +-. +..-.|.+.| .-++-++.+|..-+.-+- .++ ...+
T Consensus 104 ~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARAL-aM~P~vmLFDEPTSALDPElv~EVL~vm~~L 182 (240)
T COG1126 104 KVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARAL-AMDPKVMLFDEPTSALDPELVGEVLDVMKDL 182 (240)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHH-cCCCCEEeecCCcccCCHHHHHHHHHHHHHH
Confidence 123334444555554322111 111 1122344555 477889999998765331 111 1111
Q ss_pred CCCCCCcEEEEEecChHHHHhhCCCccccc
Q 037851 277 GNDCRGCKVLLTARDRHVLESIGSKTLRID 306 (1053)
Q Consensus 277 ~~~~~gs~iivTtR~~~v~~~~~~~~~~l~ 306 (1053)
...|-..|+.|..-..|..+.+.++-++
T Consensus 183 --A~eGmTMivVTHEM~FAr~VadrviFmd 210 (240)
T COG1126 183 --AEEGMTMIIVTHEMGFAREVADRVIFMD 210 (240)
T ss_pred --HHcCCeEEEEechhHHHHHhhheEEEee
Confidence 1246677888888777776655554443
No 384
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.43 E-value=0.1 Score=55.83 Aligned_cols=26 Identities=35% Similarity=0.277 Sum_probs=23.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
.+-|..+|++|.|||-||++||....
T Consensus 245 WkgvLm~GPPGTGKTlLAKAvATEc~ 270 (491)
T KOG0738|consen 245 WKGVLMVGPPGTGKTLLAKAVATECG 270 (491)
T ss_pred cceeeeeCCCCCcHHHHHHHHHHhhc
Confidence 46789999999999999999999876
No 385
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.40 E-value=0.27 Score=55.18 Aligned_cols=88 Identities=17% Similarity=0.240 Sum_probs=49.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCC-cCHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHh
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDT-PDIKKVQGELADQLGMQFDEESDVPGRARKLYARLQ 251 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 251 (1053)
+..+++++|..|+||||++..++.........+.+.++..... ....+-+....+.++.......+..+. ......+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl-~~al~~l- 267 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADL-QLMLHEL- 267 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHH-HHHHHHh-
Confidence 3479999999999999999998876432222334444444332 233344555666666554433333222 2233333
Q ss_pred cCCcEEEEEcCC
Q 037851 252 KENKILIILDNI 263 (1053)
Q Consensus 252 ~~~~~LlvlDdv 263 (1053)
...-++++|-.
T Consensus 268 -~~~d~VLIDTa 278 (420)
T PRK14721 268 -RGKHMVLIDTV 278 (420)
T ss_pred -cCCCEEEecCC
Confidence 23445667765
No 386
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=94.36 E-value=0.12 Score=53.65 Aligned_cols=48 Identities=25% Similarity=0.343 Sum_probs=34.0
Q ss_pred ccccchHHHHHHHHHHhc----CC---------CeeEEEEEcCCCCcHHHHHHHHHHHhhh
Q 037851 153 EAFESRMSTLKSLQNALL----DP---------DVTITGVYGMGGLGKTTLVKEVARQVKK 200 (1053)
Q Consensus 153 ~~~~gR~~~~~~l~~~l~----~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 200 (1053)
+.+.|--....++.+.+. .+ -+..++|||+.|.|||-+|+.|+....+
T Consensus 132 ~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~ 192 (388)
T KOG0651|consen 132 ENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGV 192 (388)
T ss_pred HHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCC
Confidence 344454555555555543 11 2568999999999999999999988763
No 387
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.35 E-value=0.096 Score=51.79 Aligned_cols=27 Identities=22% Similarity=0.327 Sum_probs=23.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
...+++|+|..|.|||||++.++....
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLLR 53 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 346999999999999999999987643
No 388
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=94.35 E-value=0.33 Score=43.98 Aligned_cols=45 Identities=13% Similarity=0.195 Sum_probs=31.8
Q ss_pred ccchHHHHHHHH----HHhcC---CCeeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 155 FESRMSTLKSLQ----NALLD---PDVTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 155 ~~gR~~~~~~l~----~~l~~---~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
++|..-..+.++ +.+.. .++-|++..|.+|+|||.+|+.+++..-
T Consensus 27 l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ly 78 (127)
T PF06309_consen 27 LFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHLY 78 (127)
T ss_pred ccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHHH
Confidence 445444444444 44442 3567999999999999999999998843
No 389
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.34 E-value=0.23 Score=56.76 Aligned_cols=88 Identities=18% Similarity=0.203 Sum_probs=50.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCC-cCHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhc
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDT-PDIKKVQGELADQLGMQFDEESDVPGRARKLYARLQK 252 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 252 (1053)
..|++++|+.|+||||++.+++.....+.....+..++.... ....+-++...+..+.......+..+.... ...+
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~a-L~~L-- 332 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLA-LSEL-- 332 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHH-HHhc--
Confidence 479999999999999999999987753322224555554331 233444555566666543322222122221 2223
Q ss_pred CCcEEEEEcCCC
Q 037851 253 ENKILIILDNIW 264 (1053)
Q Consensus 253 ~~~~LlvlDdv~ 264 (1053)
..+..+++|-.-
T Consensus 333 ~d~d~VLIDTaG 344 (484)
T PRK06995 333 RNKHIVLIDTIG 344 (484)
T ss_pred cCCCeEEeCCCC
Confidence 233567777764
No 390
>PRK03839 putative kinase; Provisional
Probab=94.32 E-value=0.037 Score=55.18 Aligned_cols=24 Identities=38% Similarity=0.566 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 176 ITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 176 vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
.|.|+|++|+||||+|+.+++...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999999875
No 391
>CHL00206 ycf2 Ycf2; Provisional
Probab=94.32 E-value=0.16 Score=65.55 Aligned_cols=26 Identities=31% Similarity=0.212 Sum_probs=23.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
.+-|.++|++|.|||.||+++|.+..
T Consensus 1630 PKGILLiGPPGTGKTlLAKALA~es~ 1655 (2281)
T CHL00206 1630 SRGILVIGSIGTGRSYLVKYLATNSY 1655 (2281)
T ss_pred CCceEEECCCCCCHHHHHHHHHHhcC
Confidence 46788999999999999999999865
No 392
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.29 E-value=0.048 Score=51.43 Aligned_cols=39 Identities=23% Similarity=0.445 Sum_probs=28.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcC
Q 037851 175 TITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSD 214 (1053)
Q Consensus 175 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~ 214 (1053)
++|.|+|..|+|||||++.+.+.... ..+...++.+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~-~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKR-RGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHH-TT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhH-cCCceEEEEEccC
Confidence 58999999999999999999999874 3455555565554
No 393
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.29 E-value=0.033 Score=58.83 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhh
Q 037851 175 TITGVYGMGGLGKTTLVKEVARQVKK 200 (1053)
Q Consensus 175 ~vi~I~G~~GiGKTtLa~~v~~~~~~ 200 (1053)
+.|.|+|.+|+||||+|+.+...+..
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~ 27 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEE 27 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh
Confidence 57899999999999999999998775
No 394
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.26 E-value=0.4 Score=53.90 Aligned_cols=42 Identities=24% Similarity=0.354 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHhc-----CC--CeeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 158 RMSTLKSLQNALL-----DP--DVTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 158 R~~~~~~l~~~l~-----~~--~~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
..+.++++..||. .+ +.+++.|.|++|+||||.++.++....
T Consensus 87 HkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskelg 135 (634)
T KOG1970|consen 87 HKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKELG 135 (634)
T ss_pred hHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhhC
Confidence 3456677777776 33 456999999999999999999988765
No 395
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=94.21 E-value=0.13 Score=57.44 Aligned_cols=90 Identities=18% Similarity=0.292 Sum_probs=54.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCc-CHHHHHHHHHHHhCCC-------CCCCCCh-----
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTP-DIKKVQGELADQLGMQ-------FDEESDV----- 239 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~~~~~~----- 239 (1053)
....++|+|..|+|||||++.++.... .+.++++-+.+.. .+.++..+++..-+.. ..+++..
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~~----~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGTT----ADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKG 236 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCCC----CCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHH
Confidence 346899999999999999999986432 3566667676654 3455666654432111 1111111
Q ss_pred hHHHHHHHHHHh-cCCcEEEEEcCCCCc
Q 037851 240 PGRARKLYARLQ-KENKILIILDNIWED 266 (1053)
Q Consensus 240 ~~~~~~l~~~l~-~~~~~LlvlDdv~~~ 266 (1053)
...+..+-+++. +++++|+++||+-..
T Consensus 237 ~~~A~tiAEyfrd~G~~VLl~~DslTR~ 264 (444)
T PRK08972 237 CETATTIAEYFRDQGLNVLLLMDSLTRY 264 (444)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcChHHH
Confidence 011223444443 589999999999544
No 396
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=94.19 E-value=0.094 Score=56.59 Aligned_cols=49 Identities=22% Similarity=0.325 Sum_probs=38.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHH
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGE 224 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 224 (1053)
.+++.+.|.|||||||+|.+.+-.....+ ..++-|+.....++.+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g--~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESG--KKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcC--CcEEEEEeCCCCchHhhhcc
Confidence 47899999999999999999887777544 44777777777776666544
No 397
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=94.18 E-value=0.22 Score=54.27 Aligned_cols=24 Identities=21% Similarity=0.486 Sum_probs=21.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhh
Q 037851 177 TGVYGMGGLGKTTLVKEVARQVKK 200 (1053)
Q Consensus 177 i~I~G~~GiGKTtLa~~v~~~~~~ 200 (1053)
+.+.|+.|.||||+++.+.+....
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~ 25 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRR 25 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHh
Confidence 578999999999999999988763
No 398
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.16 E-value=0.043 Score=55.24 Aligned_cols=26 Identities=23% Similarity=0.294 Sum_probs=23.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHh
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQV 198 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 198 (1053)
+.++|.|+|++|+||||+|+.++...
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999999765
No 399
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.12 E-value=0.13 Score=56.89 Aligned_cols=46 Identities=22% Similarity=0.223 Sum_probs=34.7
Q ss_pred cccchHHHHHHHHHHhcC--------------CCeeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 154 AFESRMSTLKSLQNALLD--------------PDVTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 154 ~~~gR~~~~~~l~~~l~~--------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
.++|.++.++.+.-++.. ...+-|.++|++|+|||++|+.++....
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~ 72 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLAN 72 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 467777777766544431 1236789999999999999999999875
No 400
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=94.11 E-value=0.21 Score=49.97 Aligned_cols=28 Identities=18% Similarity=0.412 Sum_probs=25.0
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 172 PDVTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 172 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
....++.|.|.+|.||||+|+.+.....
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~ 43 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLE 43 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4557999999999999999999998875
No 401
>PRK00625 shikimate kinase; Provisional
Probab=94.11 E-value=0.043 Score=53.87 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 176 ITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 176 vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
.|.++||.|+||||+|+.+++...
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998764
No 402
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.10 E-value=0.073 Score=55.39 Aligned_cols=87 Identities=17% Similarity=0.297 Sum_probs=49.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhCCCC---------------CC--
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLGMQF---------------DE-- 235 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~---------------~~-- 235 (1053)
...++.|.|.+|+|||++|.++......+. =..++|++..+.. .++.+.+. .++.+. ..
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~-ge~vlyvs~ee~~--~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~~ 93 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNF-GEKVLYVSFEEPP--EELIENMK-SFGWDLEEYEDSGKLKIIDAFPERI 93 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHH-T--EEEEESSS-H--HHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGGS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhc-CCcEEEEEecCCH--HHHHHHHH-HcCCcHHHHhhcCCEEEEecccccc
Confidence 347999999999999999999876554220 2357888876543 44444432 333210 00
Q ss_pred ---CCChhHHHHHHHHHHhcCCcEEEEEcCC
Q 037851 236 ---ESDVPGRARKLYARLQKENKILIILDNI 263 (1053)
Q Consensus 236 ---~~~~~~~~~~l~~~l~~~~~~LlvlDdv 263 (1053)
..+.......+.+.+...+...+|+|.+
T Consensus 94 ~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsl 124 (226)
T PF06745_consen 94 GWSPNDLEELLSKIREAIEELKPDRVVIDSL 124 (226)
T ss_dssp T-TSCCHHHHHHHHHHHHHHHTSSEEEEETH
T ss_pred cccccCHHHHHHHHHHHHHhcCCCEEEEECH
Confidence 1233344455555554334467888876
No 403
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.10 E-value=0.19 Score=58.63 Aligned_cols=86 Identities=15% Similarity=0.247 Sum_probs=52.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhCCCCCC---------------CC
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLGMQFDE---------------ES 237 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---------------~~ 237 (1053)
...++.|.|.+|+|||||+.+++.....+ =..++|++..+. ..++...+ +.++.+... ..
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~~--ge~~~y~s~eEs--~~~i~~~~-~~lg~~~~~~~~~g~l~~~~~~p~~~ 336 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENACAN--KERAILFAYEES--RAQLLRNA-YSWGIDFEEMEQQGLLKIICAYPESA 336 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEEeeCC--HHHHHHHH-HHcCCChHHHhhCCcEEEEEcccccC
Confidence 45799999999999999999999887533 245778776654 44444443 445432211 11
Q ss_pred ChhHHHHHHHHHHhcCCcEEEEEcCC
Q 037851 238 DVPGRARKLYARLQKENKILIILDNI 263 (1053)
Q Consensus 238 ~~~~~~~~l~~~l~~~~~~LlvlDdv 263 (1053)
..+..+..+.+.+...+.-.+|+|.+
T Consensus 337 ~~~~~~~~i~~~i~~~~~~~vvIDsi 362 (484)
T TIGR02655 337 GLEDHLQIIKSEIADFKPARIAIDSL 362 (484)
T ss_pred ChHHHHHHHHHHHHHcCCCEEEEcCH
Confidence 11334455555554444456666666
No 404
>PRK03846 adenylylsulfate kinase; Provisional
Probab=94.01 E-value=0.12 Score=52.36 Aligned_cols=29 Identities=17% Similarity=0.295 Sum_probs=25.7
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 171 DPDVTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 171 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
.++..+|+|+|++|+||||+|+.+.....
T Consensus 21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l~ 49 (198)
T PRK03846 21 GHKGVVLWFTGLSGSGKSTVAGALEEALH 49 (198)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35668999999999999999999998765
No 405
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=94.01 E-value=0.1 Score=61.97 Aligned_cols=78 Identities=12% Similarity=0.139 Sum_probs=59.3
Q ss_pred CCcccccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHh
Q 037851 150 KGYEAFESRMSTLKSLQNALLDPDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQL 229 (1053)
Q Consensus 150 ~~~~~~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 229 (1053)
.....++|.++.++.+...+... +.+.++|.+|+||||+|+.+++... ...++..+|..- ...+...+++.+..++
T Consensus 28 ~~~~~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l~-~~~~~~~~~~~n-p~~~~~~~~~~v~~~~ 103 (637)
T PRK13765 28 RLIDQVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELLP-KEELQDILVYPN-PEDPNNPKIRTVPAGK 103 (637)
T ss_pred ccHHHcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHcC-hHhHHHheEeeC-CCcchHHHHHHHHHhc
Confidence 44567889988888888777654 4788999999999999999998764 234577777655 4457788888888776
Q ss_pred CC
Q 037851 230 GM 231 (1053)
Q Consensus 230 ~~ 231 (1053)
|.
T Consensus 104 G~ 105 (637)
T PRK13765 104 GK 105 (637)
T ss_pred CH
Confidence 64
No 406
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=94.00 E-value=0.19 Score=49.85 Aligned_cols=117 Identities=23% Similarity=0.262 Sum_probs=65.7
Q ss_pred HHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHhhhc-CCCCe--EEEEEEcCCcCHHHHHHHHHHHhCCC--------C
Q 037851 165 LQNALLDPDVTITGVYGMGGLGKTTLVKEVARQVKKD-KHFDE--VVFAEVSDTPDIKKVQGELADQLGMQ--------F 233 (1053)
Q Consensus 165 l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~f~~--~~wv~~s~~~~~~~~~~~i~~~l~~~--------~ 233 (1053)
+++.+-+.+..-..|.|++|+|||||.+.+++-.... +.|-. +.-|+-+. +|+-.+.+. .
T Consensus 128 li~~ly~~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDers---------EIag~~~gvpq~~~g~R~ 198 (308)
T COG3854 128 LIKDLYQNGWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERS---------EIAGCLNGVPQHGRGRRM 198 (308)
T ss_pred HHHHHHhcCceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccc---------hhhccccCCchhhhhhhh
Confidence 5555555565667899999999999999999876643 24422 22222221 222211110 0
Q ss_pred CCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCccchhhhcCCCCCCCCCcEEEEEecChHH
Q 037851 234 DEESDVPGRARKLYARLQKENKILIILDNIWEDLDLEKVGVPSGNDCRGCKVLLTARDRHV 294 (1053)
Q Consensus 234 ~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~iivTtR~~~v 294 (1053)
+..+.. -...-+........+=++|+|.+-..++-.++..++ ..|.+++.|..-..+
T Consensus 199 dVld~c-pk~~gmmmaIrsm~PEViIvDEIGt~~d~~A~~ta~---~~GVkli~TaHG~~i 255 (308)
T COG3854 199 DVLDPC-PKAEGMMMAIRSMSPEVIIVDEIGTEEDALAILTAL---HAGVKLITTAHGNGI 255 (308)
T ss_pred hhcccc-hHHHHHHHHHHhcCCcEEEEeccccHHHHHHHHHHH---hcCcEEEEeeccccH
Confidence 000111 112223333334567899999998887766655443 247788777754333
No 407
>PRK04040 adenylate kinase; Provisional
Probab=93.98 E-value=0.05 Score=54.32 Aligned_cols=25 Identities=32% Similarity=0.569 Sum_probs=22.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 175 TITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 175 ~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
.+|+|+|++|+||||+++.+.+...
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 5899999999999999999998874
No 408
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=93.97 E-value=0.28 Score=55.30 Aligned_cols=93 Identities=18% Similarity=0.313 Sum_probs=60.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCc-CHHHHHHHHHHHhCCC-------CCCCCCh-----
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTP-DIKKVQGELADQLGMQ-------FDEESDV----- 239 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~~~~~~----- 239 (1053)
+..-++|.|.+|+|||+|+..+.+.... .+-+.++|+-+.+.. ...++..++...-... ..+++..
T Consensus 137 kGQr~~Ifg~~G~GKt~l~~~~~~~~~~-~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~ 215 (449)
T TIGR03305 137 RGGKAGLFGGAGVGKTVLLTEMIHNMVG-QHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRV 215 (449)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHh-cCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHH
Confidence 4468899999999999999999887542 234788888887664 4566666655431111 1111111
Q ss_pred hHHHHHHHHHHh--cCCcEEEEEcCCCCc
Q 037851 240 PGRARKLYARLQ--KENKILIILDNIWED 266 (1053)
Q Consensus 240 ~~~~~~l~~~l~--~~~~~LlvlDdv~~~ 266 (1053)
...+..+-+++. +++++|+++||+-..
T Consensus 216 ~~~a~tiAEyfrd~~G~~VLl~~DslTR~ 244 (449)
T TIGR03305 216 GHTALTMAEYFRDDEKQDVLLLIDNIFRF 244 (449)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecChHHH
Confidence 112334556665 379999999999544
No 409
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.95 E-value=0.12 Score=50.29 Aligned_cols=119 Identities=22% Similarity=0.276 Sum_probs=62.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcC--HHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHh
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPD--IKKVQGELADQLGMQFDEESDVPGRARKLYARLQ 251 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 251 (1053)
..+++|+|..|.|||||++.++.... ...+.+++....... ... ....++.... -+.-+...-.+...+.
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~~---~~~G~i~~~~~~~~~~~~~~----~~~~i~~~~q-lS~G~~~r~~l~~~l~ 96 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLLK---PTSGEILIDGKDIAKLPLEE----LRRRIGYVPQ-LSGGQRQRVALARALL 96 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCEEcccCCHHH----HHhceEEEee-CCHHHHHHHHHHHHHh
Confidence 36999999999999999999987543 234555543321111 111 1111111110 1111112223344443
Q ss_pred cCCcEEEEEcCCCCccc---hh---hhcCCCCCCCCCcEEEEEecChHHHHhhCCCcc
Q 037851 252 KENKILIILDNIWEDLD---LE---KVGVPSGNDCRGCKVLLTARDRHVLESIGSKTL 303 (1053)
Q Consensus 252 ~~~~~LlvlDdv~~~~~---~~---~l~~~~~~~~~gs~iivTtR~~~v~~~~~~~~~ 303 (1053)
..+-++++|+.....+ .. .+...+.. .+..++++|.+.+......++.+
T Consensus 97 -~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~--~~~tii~~sh~~~~~~~~~d~i~ 151 (157)
T cd00267 97 -LNPDLLLLDEPTSGLDPASRERLLELLRELAE--EGRTVIIVTHDPELAELAADRVI 151 (157)
T ss_pred -cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHhCCEEE
Confidence 5678999999865422 12 22222222 25678999988877665433333
No 410
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=93.93 E-value=0.036 Score=50.14 Aligned_cols=27 Identities=41% Similarity=0.578 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCC
Q 037851 177 TGVYGMGGLGKTTLVKEVARQVKKDKHFD 205 (1053)
Q Consensus 177 i~I~G~~GiGKTtLa~~v~~~~~~~~~f~ 205 (1053)
|.|+|.+|+||||+|+.++.... ..|.
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~--~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLG--LSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT----EE
T ss_pred EeeECCCccHHHHHHHHHHHHcC--Ccee
Confidence 57999999999999999999866 4453
No 411
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.90 E-value=0.36 Score=46.36 Aligned_cols=23 Identities=39% Similarity=0.577 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 037851 176 ITGVYGMGGLGKTTLVKEVARQV 198 (1053)
Q Consensus 176 vi~I~G~~GiGKTtLa~~v~~~~ 198 (1053)
++.|+|++|+||||+|+.+.+..
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998864
No 412
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=93.90 E-value=0.081 Score=48.54 Aligned_cols=41 Identities=27% Similarity=0.342 Sum_probs=29.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHH
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKV 221 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~ 221 (1053)
.+-|.|.|.+|+||||+|..++.... .-|+++|+-..-..+
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~-------~~~i~isd~vkEn~l 47 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTG-------LEYIEISDLVKENNL 47 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhC-------CceEehhhHHhhhcc
Confidence 35688999999999999999996654 236777654433333
No 413
>PRK12678 transcription termination factor Rho; Provisional
Probab=93.88 E-value=0.11 Score=59.37 Aligned_cols=93 Identities=15% Similarity=0.169 Sum_probs=51.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeE-EEEEEcCCcC-HHHHHHHHHHHhCCCCCCCCCh-----hHHHHH
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEV-VFAEVSDTPD-IKKVQGELADQLGMQFDEESDV-----PGRARK 245 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~-~wv~~s~~~~-~~~~~~~i~~~l~~~~~~~~~~-----~~~~~~ 245 (1053)
...-..|+|.+|+|||||++.+++.... .+-+.. +++-|.+... +.++.+.+--++-...-+.+.. ...+-.
T Consensus 415 kGQR~LIvgpp~aGKTtLL~~IAn~i~~-n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~ 493 (672)
T PRK12678 415 KGQRGLIVSPPKAGKTTILQNIANAITT-NNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIE 493 (672)
T ss_pred cCCEeEEeCCCCCCHHHHHHHHHHHHhh-cCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHHH
Confidence 3457889999999999999999997753 233443 3455555432 3333222210011111111111 112223
Q ss_pred HHHHHh-cCCcEEEEEcCCCCc
Q 037851 246 LYARLQ-KENKILIILDNIWED 266 (1053)
Q Consensus 246 l~~~l~-~~~~~LlvlDdv~~~ 266 (1053)
+-+++. .++.+||++|++-..
T Consensus 494 ~Ae~fre~G~dVlillDSlTR~ 515 (672)
T PRK12678 494 RAKRLVELGKDVVVLLDSITRL 515 (672)
T ss_pred HHHHHHHcCCCEEEEEeCchHH
Confidence 334443 589999999999544
No 414
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=93.86 E-value=0.33 Score=54.59 Aligned_cols=90 Identities=14% Similarity=0.264 Sum_probs=54.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCc-CHHHHHHHHHHHhCCC-------CCCCCCh-----
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTP-DIKKVQGELADQLGMQ-------FDEESDV----- 239 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~~~~~~----- 239 (1053)
+...++|+|..|+|||||++.+++... .+.++++-+.+.. .+.++..+.+..-+.. ..+++..
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 457899999999999999999987654 3455666666554 3445554444332211 1111111
Q ss_pred hHHHHHHHHHHh-cCCcEEEEEcCCCCc
Q 037851 240 PGRARKLYARLQ-KENKILIILDNIWED 266 (1053)
Q Consensus 240 ~~~~~~l~~~l~-~~~~~LlvlDdv~~~ 266 (1053)
...+..+-+++. +++.+|+++||+-..
T Consensus 233 ~~~a~tiAEyfrd~G~~Vll~~DslTr~ 260 (442)
T PRK08927 233 AYLTLAIAEYFRDQGKDVLCLMDSVTRF 260 (442)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCcHHH
Confidence 111223445553 589999999999543
No 415
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=93.86 E-value=0.11 Score=48.07 Aligned_cols=27 Identities=33% Similarity=0.308 Sum_probs=24.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhh
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVKK 200 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~~ 200 (1053)
..+|.+.|.-|.||||+++.+++....
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 468999999999999999999998754
No 416
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.85 E-value=0.065 Score=52.10 Aligned_cols=28 Identities=25% Similarity=0.380 Sum_probs=25.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhh
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKK 200 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 200 (1053)
..++++|+|..|+|||||++.+......
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~ 32 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCA 32 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhh
Confidence 4579999999999999999999988764
No 417
>PRK00131 aroK shikimate kinase; Reviewed
Probab=93.83 E-value=0.056 Score=53.62 Aligned_cols=27 Identities=22% Similarity=0.299 Sum_probs=23.9
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
....|.++|++|+||||+|+.+++...
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 346899999999999999999999864
No 418
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=93.79 E-value=0.36 Score=49.52 Aligned_cols=96 Identities=26% Similarity=0.362 Sum_probs=61.3
Q ss_pred CCCCcccccchHHHHHHHHHHhc----CC---------CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcC
Q 037851 148 SGKGYEAFESRMSTLKSLQNALL----DP---------DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSD 214 (1053)
Q Consensus 148 ~~~~~~~~~gR~~~~~~l~~~l~----~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~ 214 (1053)
|...+.++-|-+..+++|.+... .+ .++-|.++|.+|.|||-||++|+|.-. ..|-.
T Consensus 180 P~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTS--ATFlR-------- 249 (440)
T KOG0726|consen 180 PQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTS--ATFLR-------- 249 (440)
T ss_pred chhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccc--hhhhh--------
Confidence 44455667788888888877654 11 246788999999999999999999754 23311
Q ss_pred CcCHHHHHHHHHH-HhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCC
Q 037851 215 TPDIKKVQGELAD-QLGMQFDEESDVPGRARKLYARLQKENKILIILDNIWE 265 (1053)
Q Consensus 215 ~~~~~~~~~~i~~-~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~ 265 (1053)
-+-.++++ .+|.. ...+.++++.-...-+.++++|.++.
T Consensus 250 -----vvGseLiQkylGdG-------pklvRqlF~vA~e~apSIvFiDEIdA 289 (440)
T KOG0726|consen 250 -----VVGSELIQKYLGDG-------PKLVRELFRVAEEHAPSIVFIDEIDA 289 (440)
T ss_pred -----hhhHHHHHHHhccc-------hHHHHHHHHHHHhcCCceEEeehhhh
Confidence 11122222 22211 14556666655556788888898853
No 419
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.79 E-value=0.37 Score=49.03 Aligned_cols=27 Identities=30% Similarity=0.362 Sum_probs=23.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
...+++|+|..|.|||||++.++....
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 32 PGEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred CCcEEEEECCCCCCHHHHHHHhcccCC
Confidence 346999999999999999999987654
No 420
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.75 E-value=0.2 Score=51.43 Aligned_cols=111 Identities=16% Similarity=0.117 Sum_probs=59.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHH-hhh-cCCCC----------eEEEEEEcCCcCHHHHHHHHHHHhCCCCCCCCChh
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQ-VKK-DKHFD----------EVVFAEVSDTPDIKKVQGELADQLGMQFDEESDVP 240 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~-~~~-~~~f~----------~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~ 240 (1053)
..+++.|.|+.|.||||+.+.+.-. ... .+.|- ..++..+....++.+-. +...
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i~~~~~~~d~~~~~~--------------StF~ 95 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSVLTRMGASDSIQHGM--------------STFM 95 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceEEEEecCcccccccc--------------chHH
Confidence 3468899999999999999999873 221 11110 01223333222221111 1111
Q ss_pred HHHHHHHHHHh-cCCcEEEEEcCCCCccc-------hhhhcCCCCCCCCCcEEEEEecChHHHHhh
Q 037851 241 GRARKLYARLQ-KENKILIILDNIWEDLD-------LEKVGVPSGNDCRGCKVLLTARDRHVLESI 298 (1053)
Q Consensus 241 ~~~~~l~~~l~-~~~~~LlvlDdv~~~~~-------~~~l~~~~~~~~~gs~iivTtR~~~v~~~~ 298 (1053)
..+.++...+. .+++-|+++|+...... ...+...+... .++.+|++|.+.+++...
T Consensus 96 ~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~-~~~~~i~~TH~~~l~~~~ 160 (222)
T cd03287 96 VELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEE-KKCLVLFVTHYPSLGEIL 160 (222)
T ss_pred HHHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhc-cCCeEEEEcccHHHHHHH
Confidence 22233333332 35799999999743321 11222222222 478999999999887643
No 421
>PTZ00185 ATPase alpha subunit; Provisional
Probab=93.70 E-value=0.4 Score=54.26 Aligned_cols=93 Identities=13% Similarity=0.165 Sum_probs=55.1
Q ss_pred CeeEEEEEcCCCCcHHHHH-HHHHHHhhhc-----CCCCeEEEEEEcCCcC-HHHHHHHHHHHhCC-C-------CCCCC
Q 037851 173 DVTITGVYGMGGLGKTTLV-KEVARQVKKD-----KHFDEVVFAEVSDTPD-IKKVQGELADQLGM-Q-------FDEES 237 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~-----~~f~~~~wv~~s~~~~-~~~~~~~i~~~l~~-~-------~~~~~ 237 (1053)
+..-++|.|..|+|||+|| ..+.+..... +.-+.++|+-+.+... +.+ +.+.+++-+. . ..+++
T Consensus 188 RGQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~e-i~~~L~e~GaL~~TvVV~AtAdep 266 (574)
T PTZ00185 188 RGQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVAR-IHRLLRSYGALRYTTVMAATAAEP 266 (574)
T ss_pred CCCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHH-HHHHHHhcCCccceEEEEECCCCC
Confidence 4467899999999999997 6667665321 2346788899988764 333 3334443331 1 01111
Q ss_pred ChhH-----HHHHHHHHHh-cCCcEEEEEcCCCCc
Q 037851 238 DVPG-----RARKLYARLQ-KENKILIILDNIWED 266 (1053)
Q Consensus 238 ~~~~-----~~~~l~~~l~-~~~~~LlvlDdv~~~ 266 (1053)
.... ....+-+++. +++.+|+|+||+-..
T Consensus 267 ~~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr~ 301 (574)
T PTZ00185 267 AGLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSKQ 301 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCchHH
Confidence 1100 1223344443 589999999999543
No 422
>PF13245 AAA_19: Part of AAA domain
Probab=93.64 E-value=0.19 Score=41.52 Aligned_cols=26 Identities=35% Similarity=0.400 Sum_probs=19.0
Q ss_pred CeeEEEEEcCCCCcHH-HHHHHHHHHh
Q 037851 173 DVTITGVYGMGGLGKT-TLVKEVARQV 198 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKT-tLa~~v~~~~ 198 (1053)
+.+++.|.|++|.||| |+++.+.+-.
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3468889999999999 5555555544
No 423
>PRK00889 adenylylsulfate kinase; Provisional
Probab=93.62 E-value=0.078 Score=52.61 Aligned_cols=28 Identities=25% Similarity=0.446 Sum_probs=24.9
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhh
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKK 200 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 200 (1053)
...+|+|+|.+|+||||+|+.++.....
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3569999999999999999999998763
No 424
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=93.62 E-value=0.21 Score=61.33 Aligned_cols=186 Identities=15% Similarity=0.136 Sum_probs=88.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHh--hhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhCCCCC---CCCChhHHHHHHH
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQV--KKDKHFDEVVFAEVSDTPDIKKVQGELADQLGMQFD---EESDVPGRARKLY 247 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~--~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~ 247 (1053)
+.+++.|+|+.|.||||+.+.+.-.. ...+. +|.+.....+ ..+.++...++.... ...........+.
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~-----~Vpa~~~~~~-~~~d~i~~~i~~~~si~~~LStfS~~m~~~~ 394 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLLALMFQSGI-----PIPANEHSEI-PYFEEIFADIGDEQSIEQNLSTFSGHMKNIS 394 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHHHHHHHhCC-----CccCCccccc-cchhheeeecChHhHHhhhhhHHHHHHHHHH
Confidence 44799999999999999999997662 11111 1111110000 001111111110000 0000001112222
Q ss_pred HHHh-cCCcEEEEEcCCCCccch---hh----hcCCCCCCCCCcEEEEEecChHHHHhhC-CCcccccCCCHH-HHHHHH
Q 037851 248 ARLQ-KENKILIILDNIWEDLDL---EK----VGVPSGNDCRGCKVLLTARDRHVLESIG-SKTLRIDVLNDE-EAWTLF 317 (1053)
Q Consensus 248 ~~l~-~~~~~LlvlDdv~~~~~~---~~----l~~~~~~~~~gs~iivTtR~~~v~~~~~-~~~~~l~~L~~~-~~~~lf 317 (1053)
..+. -..+-|+++|+.....+. .. +...+. ..|+.+|+||...++..... ...+.-..+..+ +... |
T Consensus 395 ~il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~~d~~~l~-p 471 (771)
T TIGR01069 395 AILSKTTENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASVLFDEETLS-P 471 (771)
T ss_pred HHHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEEEcCCCCc-e
Confidence 2222 147899999998754321 11 222221 24789999999987754322 111111111100 0000 0
Q ss_pred HHHhCCCCCCccchHHHHHHHHHhCCCchHHHHHHHHHhcCCCHHHHHHHHHHhc
Q 037851 318 KKMTGDCAEKGELKSIATDVAKECGGLPIAIVTLAKALRNKTSVSTWKDALRQLK 372 (1053)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~L~~~~~~~~w~~~l~~l~ 372 (1053)
..+.-...+ -...|-+|++++ |+|-.+..-|..+... ....+..++..+.
T Consensus 472 ~Ykl~~G~~---g~S~a~~iA~~~-Glp~~ii~~A~~~~~~-~~~~~~~li~~L~ 521 (771)
T TIGR01069 472 TYKLLKGIP---GESYAFEIAQRY-GIPHFIIEQAKTFYGE-FKEEINVLIEKLS 521 (771)
T ss_pred EEEECCCCC---CCcHHHHHHHHh-CcCHHHHHHHHHHHHh-hHHHHHHHHHHHH
Confidence 000000111 134578888876 7888888888887654 4456666666553
No 425
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=93.62 E-value=0.3 Score=58.93 Aligned_cols=85 Identities=15% Similarity=0.205 Sum_probs=56.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhCCCCCC-----CCChhHHHHHHH
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLGMQFDE-----ESDVPGRARKLY 247 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~ 247 (1053)
..+++-|+|.+|+||||||.+++...... =..++|++....++. ..+++++.+.+. ....+.....+.
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~a~~~--G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~i~ 131 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVANAQAA--GGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQALEIAD 131 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHHHHHHHH
Confidence 35789999999999999998876654422 245789988877763 367777765321 112223333344
Q ss_pred HHHhcCCcEEEEEcCCC
Q 037851 248 ARLQKENKILIILDNIW 264 (1053)
Q Consensus 248 ~~l~~~~~~LlvlDdv~ 264 (1053)
..+..++.-+||+|.+-
T Consensus 132 ~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 132 MLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHhhcCCCeEEEEcchh
Confidence 44444567789999984
No 426
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.61 E-value=0.29 Score=49.64 Aligned_cols=117 Identities=15% Similarity=0.139 Sum_probs=59.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhh--cCCCCeEEEEEEcCCcCHHHHHHHHHHHhCCCCCCCCC---hhHHHHHHHH
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVKK--DKHFDEVVFAEVSDTPDIKKVQGELADQLGMQFDEESD---VPGRARKLYA 248 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~~--~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~---~~~~~~~l~~ 248 (1053)
.+++.|.|+.|.||||+.+.++...-- -+.| |.+.. ..+ .+...|...++........ ......++..
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~~la~~G~~-----vpa~~-~~l-~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~ 101 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLAIMAQIGCF-----VPAEY-ATL-PIFNRLLSRLSNDDSMERNLSTFASEMSETAY 101 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHHHcCCC-----cchhh-cCc-cChhheeEecCCccccchhhhHHHHHHHHHHH
Confidence 478999999999999999998754321 1112 21111 111 1222233332222111111 0111122222
Q ss_pred HHh-cCCcEEEEEcCCCCcc---c----hhhhcCCCCCCCCCcEEEEEecChHHHHhhC
Q 037851 249 RLQ-KENKILIILDNIWEDL---D----LEKVGVPSGNDCRGCKVLLTARDRHVLESIG 299 (1053)
Q Consensus 249 ~l~-~~~~~LlvlDdv~~~~---~----~~~l~~~~~~~~~gs~iivTtR~~~v~~~~~ 299 (1053)
.+. ..++-|+++|+..... + ...+...+.. .|+.+|+||.+.+++....
T Consensus 102 il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 102 ILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAILG 158 (204)
T ss_pred HHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHhh
Confidence 221 2578899999984432 1 1122222222 3789999999998887543
No 427
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=93.61 E-value=0.39 Score=58.36 Aligned_cols=102 Identities=15% Similarity=0.186 Sum_probs=63.0
Q ss_pred cccchHHHHHHHHHHhcC-------C-CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHH
Q 037851 154 AFESRMSTLKSLQNALLD-------P-DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGEL 225 (1053)
Q Consensus 154 ~~~gR~~~~~~l~~~l~~-------~-~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 225 (1053)
.++|.++.+..|.+.+.. + ....+.+.|+.|+|||-||++++...- +..+..+-++.|+.. . +
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~F--gse~~~IriDmse~~------e-v 633 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVF--GSEENFIRLDMSEFQ------E-V 633 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHc--CCccceEEechhhhh------h-h
Confidence 356667777777776652 1 356778999999999999999998764 444555555555421 1 3
Q ss_pred HHHhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCc
Q 037851 226 ADQLGMQFDEESDVPGRARKLYARLQKENKILIILDNIWED 266 (1053)
Q Consensus 226 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~ 266 (1053)
.+..+.+..-.. . .....+-+.+++.-..+|+||||+..
T Consensus 634 skligsp~gyvG-~-e~gg~LteavrrrP~sVVLfdeIEkA 672 (898)
T KOG1051|consen 634 SKLIGSPPGYVG-K-EEGGQLTEAVKRRPYSVVLFEEIEKA 672 (898)
T ss_pred hhccCCCccccc-c-hhHHHHHHHHhcCCceEEEEechhhc
Confidence 333333221111 1 34457777776444455667999865
No 428
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=93.61 E-value=0.3 Score=47.69 Aligned_cols=80 Identities=15% Similarity=0.152 Sum_probs=46.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhcC-Cc
Q 037851 177 TGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLGMQFDEESDVPGRARKLYARLQKE-NK 255 (1053)
Q Consensus 177 i~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~-~~ 255 (1053)
+.|.|.+|.|||++|.++... ....++|+.-.+..+. ++.+.|.+....... .-...+....+.+.+.+. +.
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~-em~~rI~~H~~~R~~-~w~t~E~~~~l~~~l~~~~~~ 74 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDD-EMAERIARHRKRRPA-HWRTIETPRDLVSALKELDPG 74 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCH-HHHHHHHHHHHhCCC-CceEeecHHHHHHHHHhcCCC
Confidence 679999999999999999765 1235777777776654 344454443222211 111112223444444321 23
Q ss_pred EEEEEcCC
Q 037851 256 ILIILDNI 263 (1053)
Q Consensus 256 ~LlvlDdv 263 (1053)
-.|++|.+
T Consensus 75 ~~VLIDcl 82 (169)
T cd00544 75 DVVLIDCL 82 (169)
T ss_pred CEEEEEcH
Confidence 37899987
No 429
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=93.57 E-value=0.11 Score=56.24 Aligned_cols=46 Identities=22% Similarity=0.323 Sum_probs=32.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHH
Q 037851 175 TITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQ 222 (1053)
Q Consensus 175 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 222 (1053)
+++.+.|.|||||||+|...+-....++ ..+.-++.....++.+++
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G--~rtLlvS~Dpa~~L~d~l 47 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRG--KRTLLVSTDPAHSLSDVL 47 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTT--S-EEEEESSTTTHHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCC--CCeeEeecCCCccHHHHh
Confidence 6899999999999999999888776543 235555555554544443
No 430
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=93.57 E-value=0.42 Score=54.12 Aligned_cols=93 Identities=20% Similarity=0.311 Sum_probs=58.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCc-CHHHHHHHHHHHhCCC-------CCCCCChh----
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTP-DIKKVQGELADQLGMQ-------FDEESDVP---- 240 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~---- 240 (1053)
+..-++|.|.+|+|||||+..++....... -+.++++-+.+.. .+.+++.++...-... ..+.+...
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~~~~-~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a 221 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIAKEH-GGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRV 221 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhcC-CCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 446889999999999999999987765322 2567778776654 4666666666532111 11111111
Q ss_pred -HHHHHHHHHHh--cCCcEEEEEcCCCCc
Q 037851 241 -GRARKLYARLQ--KENKILIILDNIWED 266 (1053)
Q Consensus 241 -~~~~~l~~~l~--~~~~~LlvlDdv~~~ 266 (1053)
.....+-+++. +++++||++||+-..
T Consensus 222 ~~~a~tiAEyfrd~~G~~VLll~DslTR~ 250 (463)
T PRK09280 222 ALTGLTMAEYFRDVEGQDVLLFIDNIFRF 250 (463)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecchHHH
Confidence 11233445552 489999999999543
No 431
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.55 E-value=0.23 Score=46.15 Aligned_cols=106 Identities=20% Similarity=0.380 Sum_probs=58.7
Q ss_pred CCcccccCCCceeEEeecCccccCCCc-ccccCccCcEEEcCCcccCCc--cccCCCCCCcEEEccCCCCcccchh-hhc
Q 037851 519 IPDNIFIGTPKLKVLDFTRMRLLSLPS-SIHLLTDLRTLCLDGCELEDI--RVIGELKDLEILSLQGSKIEQLPRE-IGQ 594 (1053)
Q Consensus 519 ~~~~~~~~~~~Lr~L~l~~~~~~~lp~-~i~~l~~Lr~L~L~~~~~~~~--~~i~~l~~L~~L~l~~~~l~~lp~~-i~~ 594 (1053)
+++..|.++..|+.+.+.. .+..++. .+..+.+|+.+.+.++ +..+ ..+..+.+|+.+.+.. .+..++.. +..
T Consensus 3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~ 79 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSN 79 (129)
T ss_dssp E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccc
Confidence 4566678888888888874 4555544 4677778888888764 5442 5567777788888865 55555543 455
Q ss_pred cCCCCeeeccCcccccccCcchhcCCccCceeeccc
Q 037851 595 LTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMAN 630 (1053)
Q Consensus 595 L~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~ 630 (1053)
+.+|+.+++.. .+..++...+.+. +|+.+.+..
T Consensus 80 ~~~l~~i~~~~--~~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 80 CTNLKNIDIPS--NITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp -TTECEEEETT--T-BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccccCc--cccEEchhhhcCC-CceEEEECC
Confidence 78888888865 3566666666676 777777654
No 432
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.55 E-value=0.036 Score=33.15 Aligned_cols=21 Identities=38% Similarity=0.504 Sum_probs=14.2
Q ss_pred ceeEEeecCccccCCCccccc
Q 037851 529 KLKVLDFTRMRLLSLPSSIHL 549 (1053)
Q Consensus 529 ~Lr~L~l~~~~~~~lp~~i~~ 549 (1053)
+|++|++++|.++.+|++|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 367777777777777766544
No 433
>PRK08149 ATP synthase SpaL; Validated
Probab=93.52 E-value=0.2 Score=56.22 Aligned_cols=90 Identities=14% Similarity=0.235 Sum_probs=54.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCC-cCHHHHHHHHHHHhCCC-------CCCCCCh-----
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDT-PDIKKVQGELADQLGMQ-------FDEESDV----- 239 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~-------~~~~~~~----- 239 (1053)
+...++|+|..|+|||||++.++.... -+.+++..+... .++.++..+........ ..+++..
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a 225 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNA 225 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhH
Confidence 446899999999999999999886432 344445555443 35666666666543221 1111111
Q ss_pred hHHHHHHHHHHh-cCCcEEEEEcCCCCc
Q 037851 240 PGRARKLYARLQ-KENKILIILDNIWED 266 (1053)
Q Consensus 240 ~~~~~~l~~~l~-~~~~~LlvlDdv~~~ 266 (1053)
...+..+-+++. +++++||++||+-..
T Consensus 226 ~~~a~tiAE~fr~~G~~Vll~~DslTr~ 253 (428)
T PRK08149 226 ALVATTVAEYFRDQGKRVVLFIDSMTRY 253 (428)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccchHHH
Confidence 112233444443 589999999999544
No 434
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=93.51 E-value=0.36 Score=59.48 Aligned_cols=177 Identities=19% Similarity=0.296 Sum_probs=91.7
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHHHh--hhcCC------------CCeEEEEEEcCCcCHHHHHHHHHHHhCCCCCCCC
Q 037851 172 PDVTITGVYGMGGLGKTTLVKEVARQV--KKDKH------------FDEVVFAEVSDTPDIKKVQGELADQLGMQFDEES 237 (1053)
Q Consensus 172 ~~~~vi~I~G~~GiGKTtLa~~v~~~~--~~~~~------------f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~ 237 (1053)
++.+++.|.|+.+.||||+.+.+.-.. ...+. |+ .++..++...++..-...+...+
T Consensus 325 ~~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~-~i~~~ig~~~si~~~lStfS~~m-------- 395 (782)
T PRK00409 325 FDKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFK-EIFADIGDEQSIEQSLSTFSGHM-------- 395 (782)
T ss_pred CCceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccc-eEEEecCCccchhhchhHHHHHH--------
Confidence 345789999999999999999986442 11111 11 22333333333222221111111
Q ss_pred ChhHHHHHHHHHHhcCCcEEEEEcCCCCccch---hhh----cCCCCCCCCCcEEEEEecChHHHHhhC-CCcc---ccc
Q 037851 238 DVPGRARKLYARLQKENKILIILDNIWEDLDL---EKV----GVPSGNDCRGCKVLLTARDRHVLESIG-SKTL---RID 306 (1053)
Q Consensus 238 ~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~~---~~l----~~~~~~~~~gs~iivTtR~~~v~~~~~-~~~~---~l~ 306 (1053)
.....+...+ ..+-|+++|......+. ..+ ...+. ..|+.+|+||...++..... ...+ .+.
T Consensus 396 ---~~~~~Il~~~--~~~sLvLlDE~~~GtDp~eg~ala~aile~l~--~~~~~vIitTH~~el~~~~~~~~~v~~~~~~ 468 (782)
T PRK00409 396 ---TNIVRILEKA--DKNSLVLFDELGAGTDPDEGAALAISILEYLR--KRGAKIIATTHYKELKALMYNREGVENASVE 468 (782)
T ss_pred ---HHHHHHHHhC--CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--HCCCEEEEECChHHHHHHHhcCCCeEEEEEE
Confidence 1112222222 47789999998754331 122 22221 24789999999988776533 1111 111
Q ss_pred CCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCchHHHHHHHHHhcCCCHHHHHHHHHHhc
Q 037851 307 VLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPIAIVTLAKALRNKTSVSTWKDALRQLK 372 (1053)
Q Consensus 307 ~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~L~~~~~~~~w~~~l~~l~ 372 (1053)
++.+...-.++-.. +... ...|-+|++++ |+|-.+..-|..+... ....+..++..+.
T Consensus 469 -~d~~~l~~~Ykl~~-G~~g----~S~a~~iA~~~-Glp~~ii~~A~~~~~~-~~~~~~~li~~l~ 526 (782)
T PRK00409 469 -FDEETLRPTYRLLI-GIPG----KSNAFEIAKRL-GLPENIIEEAKKLIGE-DKEKLNELIASLE 526 (782)
T ss_pred -EecCcCcEEEEEee-CCCC----CcHHHHHHHHh-CcCHHHHHHHHHHHhh-hhhHHHHHHHHHH
Confidence 11110000010001 1111 34578888876 7898888888887655 4456666666553
No 435
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=93.50 E-value=0.11 Score=58.64 Aligned_cols=46 Identities=24% Similarity=0.205 Sum_probs=33.9
Q ss_pred cccchHHHHHHHHHHhc-------CC---------CeeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 154 AFESRMSTLKSLQNALL-------DP---------DVTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 154 ~~~gR~~~~~~l~~~l~-------~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
.++|.+..++.+...+. .. ...-+.++|++|+|||++|+.++....
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~ 133 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILD 133 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhC
Confidence 46888888777654431 10 125689999999999999999997654
No 436
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=93.50 E-value=0.14 Score=48.73 Aligned_cols=32 Identities=16% Similarity=0.277 Sum_probs=27.5
Q ss_pred cCCCeeEEEEEcCCCCcHHHHHHHHHHHhhhc
Q 037851 170 LDPDVTITGVYGMGGLGKTTLVKEVARQVKKD 201 (1053)
Q Consensus 170 ~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 201 (1053)
...+..+|.+.|.+|.||||+|.++++.....
T Consensus 19 ~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~ 50 (197)
T COG0529 19 KGQKGAVIWFTGLSGSGKSTIANALEEKLFAK 50 (197)
T ss_pred hCCCCeEEEeecCCCCCHHHHHHHHHHHHHHc
Confidence 34566899999999999999999999998744
No 437
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=93.50 E-value=0.62 Score=48.53 Aligned_cols=53 Identities=23% Similarity=0.295 Sum_probs=35.9
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhC
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLG 230 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 230 (1053)
...++.|.|.+|.||||+|.+++..... .-..++|++.... ...+... +++++
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~--~g~~~~~is~e~~--~~~i~~~-~~~~g 71 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLR--DGDPVIYVTTEES--RESIIRQ-AAQFG 71 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHh--cCCeEEEEEccCC--HHHHHHH-HHHhC
Confidence 3579999999999999999998765432 2356788877543 3444333 44444
No 438
>PRK11823 DNA repair protein RadA; Provisional
Probab=93.48 E-value=0.2 Score=57.49 Aligned_cols=86 Identities=21% Similarity=0.328 Sum_probs=51.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhCCCCCCCC-ChhHHHHHHHHHHhc
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLGMQFDEES-DVPGRARKLYARLQK 252 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~l~~~l~~ 252 (1053)
..++.|.|.+|+|||||+.+++.....+ -..++|++..+. ...+. .-++.++...+... ..+.....+.+.+.+
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~--g~~vlYvs~Ees--~~qi~-~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~ 154 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAA--GGKVLYVSGEES--ASQIK-LRAERLGLPSDNLYLLAETNLEAILATIEE 154 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEcccc--HHHHH-HHHHHcCCChhcEEEeCCCCHHHHHHHHHh
Confidence 4699999999999999999999876522 245788876543 33332 22455554221100 000112344444444
Q ss_pred CCcEEEEEcCCC
Q 037851 253 ENKILIILDNIW 264 (1053)
Q Consensus 253 ~~~~LlvlDdv~ 264 (1053)
.+.-+||+|.+.
T Consensus 155 ~~~~lVVIDSIq 166 (446)
T PRK11823 155 EKPDLVVIDSIQ 166 (446)
T ss_pred hCCCEEEEechh
Confidence 456678888873
No 439
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=93.47 E-value=0.23 Score=55.75 Aligned_cols=94 Identities=19% Similarity=0.280 Sum_probs=59.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhcC--CCC---------eEEEEEEcCCcCHHHHHHHHHHHhC-CC-------C
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKKDK--HFD---------EVVFAEVSDTPDIKKVQGELADQLG-MQ-------F 233 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~--~f~---------~~~wv~~s~~~~~~~~~~~i~~~l~-~~-------~ 233 (1053)
+..-++|.|-+|+|||||+..+++...... ..| .++++-+.+.....+.+.+.+..-+ .. .
T Consensus 140 ~GQRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~at 219 (466)
T TIGR01040 140 RGQKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNL 219 (466)
T ss_pred cCCeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEEC
Confidence 446789999999999999999988764100 012 5677888887666665555555544 11 1
Q ss_pred CCCCCh-----hHHHHHHHHHHh--cCCcEEEEEcCCCCc
Q 037851 234 DEESDV-----PGRARKLYARLQ--KENKILIILDNIWED 266 (1053)
Q Consensus 234 ~~~~~~-----~~~~~~l~~~l~--~~~~~LlvlDdv~~~ 266 (1053)
.+++.. ...+..+-+++. +++++|+++||+-..
T Consensus 220 sd~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr~ 259 (466)
T TIGR01040 220 ANDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSSY 259 (466)
T ss_pred CCCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHHH
Confidence 111111 111234556665 479999999999543
No 440
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=93.47 E-value=0.21 Score=58.73 Aligned_cols=63 Identities=11% Similarity=0.209 Sum_probs=44.4
Q ss_pred cccccchHHHHHHHHHHhc--CCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCc
Q 037851 152 YEAFESRMSTLKSLQNALL--DPDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTP 216 (1053)
Q Consensus 152 ~~~~~gR~~~~~~l~~~l~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 216 (1053)
...++|+...+.++.+.+. .....-|.|+|..|+|||++|+.+.+.... .-...+.|++....
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r--~~~p~v~v~c~~~~ 250 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPR--ADKPLVYLNCAALP 250 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCc--CCCCeEEEEcccCC
Confidence 3567888888887777665 233457889999999999999999987542 12234556666543
No 441
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=93.44 E-value=0.42 Score=51.59 Aligned_cols=59 Identities=17% Similarity=0.276 Sum_probs=41.5
Q ss_pred HHHHHhc-CCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCc-CHHHHHHHHH
Q 037851 164 SLQNALL-DPDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTP-DIKKVQGELA 226 (1053)
Q Consensus 164 ~l~~~l~-~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~ 226 (1053)
++++.+. -.+...++|.|..|+|||+|++++++... -+.++++-+.+.. .+.+++.++-
T Consensus 146 rvID~l~Pi~kGqr~~I~G~~G~GKT~L~~~Iak~~~----~dvvVyv~iGERg~Ev~e~l~ef~ 206 (369)
T cd01134 146 RVLDTLFPVVKGGTAAIPGPFGCGKTVIQQSLSKYSN----SDIVIYVGCGERGNEMTEVLEEFP 206 (369)
T ss_pred hhhhccccccCCCEEEEECCCCCChHHHHHHHHhCCC----CCEEEEEEeCCChHHHHHHHHHHH
Confidence 3444443 22446899999999999999999988632 4678888887764 4566666553
No 442
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=93.43 E-value=0.41 Score=50.18 Aligned_cols=54 Identities=22% Similarity=0.413 Sum_probs=33.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhcCCC----------CeEEEEEEcCCc-CHHHHHHHHHHHh
Q 037851 176 ITGVYGMGGLGKTTLVKEVARQVKKDKHF----------DEVVFAEVSDTP-DIKKVQGELADQL 229 (1053)
Q Consensus 176 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f----------~~~~wv~~s~~~-~~~~~~~~i~~~l 229 (1053)
+..|+|++|+|||+||..++-.......| ..+++++..... .+.+-+..+...+
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~ 67 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHL 67 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhc
Confidence 56799999999999999998875432211 235666655543 2333344444443
No 443
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.43 E-value=0.058 Score=53.45 Aligned_cols=23 Identities=43% Similarity=0.619 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 037851 176 ITGVYGMGGLGKTTLVKEVARQV 198 (1053)
Q Consensus 176 vi~I~G~~GiGKTtLa~~v~~~~ 198 (1053)
+|+|.|.+|.||||+|+.++...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999875
No 444
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=93.42 E-value=0.52 Score=50.61 Aligned_cols=52 Identities=21% Similarity=0.211 Sum_probs=37.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHH
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQ 228 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 228 (1053)
..++.|.|.+|+||||++.+++.....+ +=..++|++... +..++...+...
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~~~-~g~~vl~iS~E~--~~~~~~~r~~~~ 81 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLITQ-HGVRVGTISLEE--PVVRTARRLLGQ 81 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHh-cCceEEEEEccc--CHHHHHHHHHHH
Confidence 3688999999999999999998776432 124678887765 345555555444
No 445
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=93.41 E-value=0.65 Score=50.64 Aligned_cols=39 Identities=26% Similarity=0.510 Sum_probs=30.2
Q ss_pred HHHHHHhc--CCCeeEEEEEcCCCCcHHHHHHHHHHHhhhc
Q 037851 163 KSLQNALL--DPDVTITGVYGMGGLGKTTLVKEVARQVKKD 201 (1053)
Q Consensus 163 ~~l~~~l~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 201 (1053)
.++++.+. .++..+|+|.|.+|+|||||+..+....+..
T Consensus 43 ~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~ 83 (332)
T PRK09435 43 QELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQ 83 (332)
T ss_pred HHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 34444443 3567899999999999999999998887744
No 446
>PRK06217 hypothetical protein; Validated
Probab=93.40 E-value=0.063 Score=53.68 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 176 ITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 176 vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
.|.|.|.+|.||||+|+.+.+...
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999998865
No 447
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=93.39 E-value=0.096 Score=53.08 Aligned_cols=63 Identities=24% Similarity=0.284 Sum_probs=39.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEE-------EcCCcCHHHH--HHHHHHHhCCCCCC
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAE-------VSDTPDIKKV--QGELADQLGMQFDE 235 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~-------~s~~~~~~~~--~~~i~~~l~~~~~~ 235 (1053)
+...|.++||+|.||||..+.++.....+..-..++-.+ ..-..|+++. .++..++-+.+..+
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNG 89 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNG 89 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCc
Confidence 456888999999999999999999877544332232211 1122345544 45677776655443
No 448
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.31 E-value=1.9 Score=50.32 Aligned_cols=172 Identities=18% Similarity=0.216 Sum_probs=94.8
Q ss_pred ccccchHHHHHHHHHHhcCC-------------CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHH
Q 037851 153 EAFESRMSTLKSLQNALLDP-------------DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIK 219 (1053)
Q Consensus 153 ~~~~gR~~~~~~l~~~l~~~-------------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 219 (1053)
+++-|-.+.++.+.+.+.-+ ...-|.++|++|.|||-||.+++..... -|++|..+
T Consensus 667 ~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~-------~fisvKGP---- 735 (952)
T KOG0735|consen 667 EDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNL-------RFISVKGP---- 735 (952)
T ss_pred eecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCe-------eEEEecCH----
Confidence 44555555555555555411 2346889999999999999999887552 25666553
Q ss_pred HHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCcc-------------chhhhcCCCC--CCCCCcE
Q 037851 220 KVQGELADQLGMQFDEESDVPGRARKLYARLQKENKILIILDNIWEDL-------------DLEKVGVPSG--NDCRGCK 284 (1053)
Q Consensus 220 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~-------------~~~~l~~~~~--~~~~gs~ 284 (1053)
+++. +.+|. .++-++.+..+-+.-+++++++|..++.. ....+...+. .+-.|.-
T Consensus 736 ElL~---KyIGa-------SEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~ 805 (952)
T KOG0735|consen 736 ELLS---KYIGA-------SEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVY 805 (952)
T ss_pred HHHH---HHhcc-------cHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEE
Confidence 1221 22222 12455677777767899999999986541 1223333322 1234555
Q ss_pred EEE-EecChHHHHh---hC--CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCchH
Q 037851 285 VLL-TARDRHVLES---IG--SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPIA 347 (1053)
Q Consensus 285 iiv-TtR~~~v~~~---~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPla 347 (1053)
|+. |||..-+-.. -| ++.+.=..-++.+-.++|+..+.....+. ....+.++.+.+|.--|
T Consensus 806 i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~--~vdl~~~a~~T~g~tgA 872 (952)
T KOG0735|consen 806 ILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDT--DVDLECLAQKTDGFTGA 872 (952)
T ss_pred EEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCcc--ccchHHHhhhcCCCchh
Confidence 554 5554422221 22 33334444456677777776664211111 11255677777776543
No 449
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=93.31 E-value=0.058 Score=54.78 Aligned_cols=23 Identities=43% Similarity=0.690 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 037851 176 ITGVYGMGGLGKTTLVKEVARQV 198 (1053)
Q Consensus 176 vi~I~G~~GiGKTtLa~~v~~~~ 198 (1053)
+|+|.|..|+||||+|+.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998876
No 450
>COG4240 Predicted kinase [General function prediction only]
Probab=93.31 E-value=0.56 Score=46.45 Aligned_cols=82 Identities=17% Similarity=0.155 Sum_probs=51.6
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhCC-----CCCCCCChhHHHHH
Q 037851 171 DPDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLGM-----QFDEESDVPGRARK 245 (1053)
Q Consensus 171 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~-----~~~~~~~~~~~~~~ 245 (1053)
.+++-+++|.|+-|.||||++..+++....++. ..++..+..+-+-...-...++++... ..++..+. .....
T Consensus 47 ~grPli~gisGpQGSGKStls~~i~~~L~~kg~-ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~-tlgln 124 (300)
T COG4240 47 RGRPLIVGISGPQGSGKSTLSALIVRLLAAKGL-ERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDP-TLGLN 124 (300)
T ss_pred cCCceEEEeecCCCCchhhHHHHHHHHHHHhcc-cceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCch-HHHHH
Confidence 345779999999999999999999999876543 466666665544444444455555321 22233333 44455
Q ss_pred HHHHHhcCC
Q 037851 246 LYARLQKEN 254 (1053)
Q Consensus 246 l~~~l~~~~ 254 (1053)
+.+.+.+++
T Consensus 125 VLnai~~g~ 133 (300)
T COG4240 125 VLNAIARGG 133 (300)
T ss_pred HHHHHhcCC
Confidence 555555444
No 451
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.31 E-value=0.073 Score=53.06 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 175 TITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 175 ~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
.++.|+|+.|+||||+|+.+.....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999988754
No 452
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=93.29 E-value=0.97 Score=52.92 Aligned_cols=46 Identities=9% Similarity=0.185 Sum_probs=36.0
Q ss_pred ccccchHHHHHHHHHHhc--CCCeeEEEEEcCCCCcHHHHHHHHHHHh
Q 037851 153 EAFESRMSTLKSLQNALL--DPDVTITGVYGMGGLGKTTLVKEVARQV 198 (1053)
Q Consensus 153 ~~~~gR~~~~~~l~~~l~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 198 (1053)
..++|....+.++.+.+. .....-|.|.|..|+||+++|+.+++..
T Consensus 212 ~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~S 259 (526)
T TIGR02329 212 DDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLS 259 (526)
T ss_pred hheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHhc
Confidence 457888888877776664 2333578899999999999999999764
No 453
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.24 E-value=0.077 Score=52.61 Aligned_cols=25 Identities=16% Similarity=0.288 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 175 TITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 175 ~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
++|.+.|++|+||||+|+.+.....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 5899999999999999999988753
No 454
>PRK06851 hypothetical protein; Provisional
Probab=93.20 E-value=0.76 Score=50.64 Aligned_cols=43 Identities=26% Similarity=0.304 Sum_probs=33.2
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCC
Q 037851 172 PDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDT 215 (1053)
Q Consensus 172 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~ 215 (1053)
+--+++.|.|.+|+||||+++.++..... ..++..++-|.+.+
T Consensus 212 ~~~~~~~i~G~pG~GKstl~~~i~~~a~~-~G~~v~~~hC~~dP 254 (367)
T PRK06851 212 GVKNRYFLKGRPGTGKSTMLKKIAKAAEE-RGFDVEVYHCGFDP 254 (367)
T ss_pred ccceEEEEeCCCCCcHHHHHHHHHHHHHh-CCCeEEEEeCCCCC
Confidence 34478999999999999999999999864 44666665555544
No 455
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=93.20 E-value=0.61 Score=52.64 Aligned_cols=93 Identities=22% Similarity=0.330 Sum_probs=59.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCc-CHHHHHHHHHHHhCCC-------CCCCCChh----
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTP-DIKKVQGELADQLGMQ-------FDEESDVP---- 240 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~---- 240 (1053)
+..-++|.|.+|+|||||+..+....... +-+.++++-+.+.. .+.+++.++...-... ..+++...
T Consensus 142 ~GQr~~If~~~G~GKt~L~~~~~~~~~~~-~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a 220 (461)
T TIGR01039 142 KGGKIGLFGGAGVGKTVLIQELINNIAKE-HGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRV 220 (461)
T ss_pred cCCEEEeecCCCCChHHHHHHHHHHHHhc-CCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 44688999999999999999998876532 23467788776654 4566776665431111 11111111
Q ss_pred -HHHHHHHHHHh--cCCcEEEEEcCCCCc
Q 037851 241 -GRARKLYARLQ--KENKILIILDNIWED 266 (1053)
Q Consensus 241 -~~~~~l~~~l~--~~~~~LlvlDdv~~~ 266 (1053)
..+..+-+++. +++++|+++||+-..
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLll~DslTR~ 249 (461)
T TIGR01039 221 ALTGLTMAEYFRDEQGQDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHHHhcCCeeEEEecchhHH
Confidence 12334555664 378999999999554
No 456
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=93.19 E-value=0.38 Score=49.95 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=22.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhh
Q 037851 176 ITGVYGMGGLGKTTLVKEVARQVKK 200 (1053)
Q Consensus 176 vi~I~G~~GiGKTtLa~~v~~~~~~ 200 (1053)
+|+|.|.+|.||||+|+.+.+.++.
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~ 25 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAR 25 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5899999999999999999988764
No 457
>PRK15453 phosphoribulokinase; Provisional
Probab=93.18 E-value=0.58 Score=49.09 Aligned_cols=28 Identities=25% Similarity=0.400 Sum_probs=24.7
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 172 PDVTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 172 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
.+..+|+|.|.+|.||||+|+.+++.++
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~ 30 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFR 30 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3567999999999999999999998765
No 458
>COG1084 Predicted GTPase [General function prediction only]
Probab=93.16 E-value=2.6 Score=44.74 Aligned_cols=27 Identities=33% Similarity=0.602 Sum_probs=24.3
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHHHH
Q 037851 171 DPDVTITGVYGMGGLGKTTLVKEVARQ 197 (1053)
Q Consensus 171 ~~~~~vi~I~G~~GiGKTtLa~~v~~~ 197 (1053)
+.+.+.|.|.|++.||||||.+.+-..
T Consensus 165 dp~~pTivVaG~PNVGKSSlv~~lT~A 191 (346)
T COG1084 165 DPDLPTIVVAGYPNVGKSSLVRKLTTA 191 (346)
T ss_pred CCCCCeEEEecCCCCcHHHHHHHHhcC
Confidence 567899999999999999999999765
No 459
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=93.16 E-value=0.32 Score=51.56 Aligned_cols=55 Identities=18% Similarity=0.200 Sum_probs=42.5
Q ss_pred cccccchHHHHHH---HHHHhcCC--CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCe
Q 037851 152 YEAFESRMSTLKS---LQNALLDP--DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDE 206 (1053)
Q Consensus 152 ~~~~~gR~~~~~~---l~~~l~~~--~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~ 206 (1053)
..+++|..+..+. +++++.++ ..+.|.|+|++|.|||+||-.+++.....-.|..
T Consensus 38 ~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~ 97 (450)
T COG1224 38 GDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVA 97 (450)
T ss_pred CCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCcee
Confidence 4578887766553 45666644 3589999999999999999999999887666643
No 460
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=93.13 E-value=0.072 Score=51.03 Aligned_cols=24 Identities=33% Similarity=0.537 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 176 ITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 176 vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
+|.|.|..|+||||+|+.+.....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998764
No 461
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=93.11 E-value=0.21 Score=59.61 Aligned_cols=76 Identities=13% Similarity=0.160 Sum_probs=52.2
Q ss_pred cccccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhCC
Q 037851 152 YEAFESRMSTLKSLQNALLDPDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLGM 231 (1053)
Q Consensus 152 ~~~~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 231 (1053)
...++|.++.++.+...+... +.+.++|+.|+||||+|+.+++..... .|...+++.- ...+...+++.+..+++.
T Consensus 17 ~~~viG~~~a~~~l~~a~~~~--~~~ll~G~pG~GKT~la~~la~~l~~~-~~~~~~~~~n-~~~~~~~~~~~v~~~~g~ 92 (608)
T TIGR00764 17 IDQVIGQEEAVEIIKKAAKQK--RNVLLIGEPGVGKSMLAKAMAELLPDE-ELEDILVYPN-PEDPNMPRIVEVPAGEGR 92 (608)
T ss_pred HhhccCHHHHHHHHHHHHHcC--CCEEEECCCCCCHHHHHHHHHHHcCch-hheeEEEEeC-CCCCchHHHHHHHHhhch
Confidence 456789888888777777654 356699999999999999999887532 3333333322 223455667777776654
No 462
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=93.11 E-value=0.12 Score=51.74 Aligned_cols=36 Identities=28% Similarity=0.353 Sum_probs=28.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEE
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAE 211 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~ 211 (1053)
.++|.|+|+.|+|||||++.+..... ..|...+..+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~--~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFP--DKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHST--TTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcc--cccccceeec
Confidence 47899999999999999999999876 5564444433
No 463
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=93.10 E-value=0.27 Score=56.43 Aligned_cols=87 Identities=22% Similarity=0.297 Sum_probs=49.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhCCCCCCCC-ChhHHHHHHHHHHh
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLGMQFDEES-DVPGRARKLYARLQ 251 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~l~~~l~ 251 (1053)
...++.|.|.+|+|||||+.+++......+ ..++|++..+. ..++.. -++.++...+... ..+.....+.+.+.
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~~a~~g--~kvlYvs~EEs--~~qi~~-ra~rlg~~~~~l~~~~e~~~~~I~~~i~ 167 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQLAKNQ--MKVLYVSGEES--LQQIKM-RAIRLGLPEPNLYVLSETNWEQICANIE 167 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHhcC--CcEEEEECcCC--HHHHHH-HHHHcCCChHHeEEcCCCCHHHHHHHHH
Confidence 347999999999999999999987765332 35788876543 333322 2334443211100 00011234444444
Q ss_pred cCCcEEEEEcCCC
Q 037851 252 KENKILIILDNIW 264 (1053)
Q Consensus 252 ~~~~~LlvlDdv~ 264 (1053)
+.+.-++|+|.+.
T Consensus 168 ~~~~~~vVIDSIq 180 (454)
T TIGR00416 168 EENPQACVIDSIQ 180 (454)
T ss_pred hcCCcEEEEecch
Confidence 4455677888773
No 464
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=93.09 E-value=0.21 Score=55.35 Aligned_cols=46 Identities=17% Similarity=0.208 Sum_probs=36.0
Q ss_pred cccchHHHHHHHHHHhcC--------------CCeeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 154 AFESRMSTLKSLQNALLD--------------PDVTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 154 ~~~gR~~~~~~l~~~l~~--------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
.++|.++.++.+..++.. ....-|.++|+.|+|||++|+.++....
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~ 75 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 467888888877766631 0136789999999999999999998864
No 465
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=93.09 E-value=0.077 Score=52.66 Aligned_cols=24 Identities=38% Similarity=0.714 Sum_probs=22.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 176 ITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 176 vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
+|+|.|.+|+||||+|+.+.....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~ 24 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLR 24 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998876
No 466
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=93.09 E-value=2.7 Score=45.77 Aligned_cols=47 Identities=15% Similarity=0.191 Sum_probs=33.2
Q ss_pred cccccCCCHHHHHHHHHHHhCCCCC--CccchHHHHHHHHHhCCCchHH
Q 037851 302 TLRIDVLNDEEAWTLFKKMTGDCAE--KGELKSIATDVAKECGGLPIAI 348 (1053)
Q Consensus 302 ~~~l~~L~~~~~~~lf~~~~~~~~~--~~~~~~~~~~i~~~~~GlPlai 348 (1053)
++++.+++.+|+..++.-......- ...-+...+++.-..+|+|.-+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 7899999999999999877642221 1333455666777779998654
No 467
>PRK13947 shikimate kinase; Provisional
Probab=93.09 E-value=0.078 Score=52.39 Aligned_cols=24 Identities=38% Similarity=0.401 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 176 ITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 176 vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
-|.|+|++|+||||+|+.+++...
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg 26 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLS 26 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999999875
No 468
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=93.07 E-value=0.13 Score=56.20 Aligned_cols=49 Identities=18% Similarity=0.286 Sum_probs=42.1
Q ss_pred CcccccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 151 GYEAFESRMSTLKSLQNALLDPDVTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 151 ~~~~~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
....++|.++.+..++..+.++.+.-|.|.|..|+||||+|+.+++-..
T Consensus 15 pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~ 63 (350)
T CHL00081 15 PFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLP 63 (350)
T ss_pred CHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHh
Confidence 3456889999888888888788888788999999999999999988754
No 469
>PRK05973 replicative DNA helicase; Provisional
Probab=93.07 E-value=0.56 Score=48.39 Aligned_cols=49 Identities=27% Similarity=0.159 Sum_probs=35.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHH
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGEL 225 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 225 (1053)
...++.|.|.+|+|||++|.+++.....+ =..++|++.... ..++...+
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a~~--Ge~vlyfSlEes--~~~i~~R~ 111 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAMKS--GRTGVFFTLEYT--EQDVRDRL 111 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEEEeCC--HHHHHHHH
Confidence 34689999999999999999998776532 245777777654 34444443
No 470
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=93.04 E-value=0.26 Score=55.47 Aligned_cols=91 Identities=18% Similarity=0.215 Sum_probs=51.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhCC-----CCC-CCCCh-----hH
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLGM-----QFD-EESDV-----PG 241 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~-----~~~-~~~~~-----~~ 241 (1053)
....++|+|..|+|||||++.++.... ....+++..-.+..++.++....+..... -.. +++.. ..
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~~---pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~ 240 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARADA---FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPL 240 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC---CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHH
Confidence 346899999999999999998875432 12234444333444555554444433211 111 11111 01
Q ss_pred HHHHHHHHHh-cCCcEEEEEcCCCCc
Q 037851 242 RARKLYARLQ-KENKILIILDNIWED 266 (1053)
Q Consensus 242 ~~~~l~~~l~-~~~~~LlvlDdv~~~ 266 (1053)
....+-+++. +++.+|+++||+-..
T Consensus 241 ~a~~iAEyfrd~G~~Vll~~DslTr~ 266 (450)
T PRK06002 241 TATAIAEYFRDRGENVLLIVDSVTRF 266 (450)
T ss_pred HHHHHHHHHHHcCCCEEEeccchHHH
Confidence 1223344443 589999999998543
No 471
>PRK13949 shikimate kinase; Provisional
Probab=93.02 E-value=0.08 Score=51.95 Aligned_cols=24 Identities=42% Similarity=0.429 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 176 ITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 176 vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
-|.|+|+.|.||||+|+.+++...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999998865
No 472
>PTZ00088 adenylate kinase 1; Provisional
Probab=93.01 E-value=0.32 Score=50.17 Aligned_cols=24 Identities=21% Similarity=0.437 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 176 ITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 176 vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
.|.|+|++|+||||+|+.+++...
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~g 31 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKEN 31 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 388999999999999999998764
No 473
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=93.00 E-value=0.096 Score=53.82 Aligned_cols=28 Identities=25% Similarity=0.529 Sum_probs=24.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhcC
Q 037851 175 TITGVYGMGGLGKTTLVKEVARQVKKDK 202 (1053)
Q Consensus 175 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~ 202 (1053)
++|+|.|.||+||||++..++......+
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~~la~~G 28 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSAALAEMG 28 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHHHHHHCC
Confidence 4789999999999999999999887543
No 474
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=93.00 E-value=0.14 Score=55.02 Aligned_cols=37 Identities=24% Similarity=0.467 Sum_probs=28.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEc
Q 037851 175 TITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVS 213 (1053)
Q Consensus 175 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s 213 (1053)
+.|+|+|-||+||||+|..++.....++ + .++-|+..
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~La~~G-~-~VlliD~D 37 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAALAEMG-K-KVMIVGCD 37 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHHHHCC-C-eEEEEeCC
Confidence 4789999999999999999998887543 2 34445544
No 475
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=93.00 E-value=1.3 Score=51.79 Aligned_cols=45 Identities=13% Similarity=0.268 Sum_probs=35.7
Q ss_pred ccccchHHHHHHHHHHhc--CCCeeEEEEEcCCCCcHHHHHHHHHHH
Q 037851 153 EAFESRMSTLKSLQNALL--DPDVTITGVYGMGGLGKTTLVKEVARQ 197 (1053)
Q Consensus 153 ~~~~gR~~~~~~l~~~l~--~~~~~vi~I~G~~GiGKTtLa~~v~~~ 197 (1053)
..++|....++++.+.+. .....-|.|.|..|+||+++|+.+++.
T Consensus 219 ~~iiG~S~~m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A~~IH~~ 265 (538)
T PRK15424 219 GDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHRE 265 (538)
T ss_pred hheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHh
Confidence 457888888877776654 233457889999999999999999987
No 476
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=93.00 E-value=0.49 Score=53.82 Aligned_cols=94 Identities=20% Similarity=0.249 Sum_probs=58.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCC--CeEEEEEEcCCc-CHHHHHHHHHHHhCCC-------CCCCCCh---
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKKDKHF--DEVVFAEVSDTP-DIKKVQGELADQLGMQ-------FDEESDV--- 239 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f--~~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~~~~~~--- 239 (1053)
+..-++|.|..|+|||||+..+++.....+.+ ..++++-+.+.. .+.+++.++...-... ..+.+..
T Consensus 140 ~GQR~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~ 219 (458)
T TIGR01041 140 RGQKLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERI 219 (458)
T ss_pred cCCEEEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHH
Confidence 34678999999999999999999876532111 156777776654 4666666665432111 1111111
Q ss_pred --hHHHHHHHHHHh--cCCcEEEEEcCCCCc
Q 037851 240 --PGRARKLYARLQ--KENKILIILDNIWED 266 (1053)
Q Consensus 240 --~~~~~~l~~~l~--~~~~~LlvlDdv~~~ 266 (1053)
......+-+++. +++++|+++||+-..
T Consensus 220 ~a~~~a~tiAEyfr~d~G~~VLli~DslTR~ 250 (458)
T TIGR01041 220 VTPRMALTAAEYLAFEKDMHVLVILTDMTNY 250 (458)
T ss_pred HHHHHHHHHHHHHHHccCCcEEEEEcChhHH
Confidence 112334556665 589999999999543
No 477
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=93.00 E-value=0.49 Score=49.23 Aligned_cols=40 Identities=25% Similarity=0.283 Sum_probs=31.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEc
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVS 213 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s 213 (1053)
+-+..|+|+.|.||+.|.|.+..-...+-.-+.++||+-.
T Consensus 87 P~I~~VYGPTG~GKSqLlRNLis~~lI~P~PETVfFItP~ 126 (369)
T PF02456_consen 87 PFIGVVYGPTGSGKSQLLRNLISCQLIQPPPETVFFITPQ 126 (369)
T ss_pred ceEEEEECCCCCCHHHHHHHhhhcCcccCCCCceEEECCC
Confidence 3456689999999999999998776655566778888643
No 478
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=92.96 E-value=0.16 Score=55.67 Aligned_cols=46 Identities=26% Similarity=0.298 Sum_probs=38.7
Q ss_pred ccccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHh
Q 037851 153 EAFESRMSTLKSLQNALLDPDVTITGVYGMGGLGKTTLVKEVARQV 198 (1053)
Q Consensus 153 ~~~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 198 (1053)
..++|.++.+..++-.+.++...-+.|.|..|+|||||++.+..-.
T Consensus 4 ~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred cccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 4578999888888766667766778899999999999999998765
No 479
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=92.95 E-value=0.15 Score=54.34 Aligned_cols=51 Identities=14% Similarity=0.232 Sum_probs=39.9
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHH
Q 037851 172 PDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELA 226 (1053)
Q Consensus 172 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 226 (1053)
+..+++.|+|.+|+|||++|.++...... ....++||+..+. ..++.+...
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~--~ge~vlyvs~~e~--~~~l~~~~~ 71 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGAR--EGEPVLYVSTEES--PEELLENAR 71 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHHh--cCCcEEEEEecCC--HHHHHHHHH
Confidence 35689999999999999999999998773 4778999998875 344444433
No 480
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=92.91 E-value=0.44 Score=46.23 Aligned_cols=117 Identities=19% Similarity=0.118 Sum_probs=61.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcC---CcCHHHHHHHHH---HHhCCCC--CCCC--ChhH--
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSD---TPDIKKVQGELA---DQLGMQF--DEES--DVPG-- 241 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~---~~~~~~~~~~i~---~~l~~~~--~~~~--~~~~-- 241 (1053)
...|-|++..|.||||.|--++-+....+ + .+..+.+-+ .......+.... .+.+... .... ....
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~g-~-~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~ 82 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGHG-K-KVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIA 82 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHCC-C-eEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHH
Confidence 35788888899999999999988766332 2 333333322 223333333320 0011111 0001 0001
Q ss_pred --HHHHHHHHHhcCCcEEEEEcCCCCc-----cchhhhcCCCCCCCCCcEEEEEecCh
Q 037851 242 --RARKLYARLQKENKILIILDNIWED-----LDLEKVGVPSGNDCRGCKVLLTARDR 292 (1053)
Q Consensus 242 --~~~~l~~~l~~~~~~LlvlDdv~~~-----~~~~~l~~~~~~~~~gs~iivTtR~~ 292 (1053)
......+.+..++-=+||||.+-.. ...+++...+.....+.-||+|-|+.
T Consensus 83 ~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 83 KAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 1223334444466679999998533 22233333333333466899999976
No 481
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=92.91 E-value=0.11 Score=53.12 Aligned_cols=33 Identities=24% Similarity=0.368 Sum_probs=28.0
Q ss_pred HHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 167 NALLDPDVTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 167 ~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
+.+...++++|+++|+.|+|||||..++.+...
T Consensus 15 ~~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 15 ERLDKHGLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred HHhhhcCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 344466899999999999999999999988754
No 482
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=92.90 E-value=0.12 Score=53.35 Aligned_cols=172 Identities=16% Similarity=0.151 Sum_probs=80.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhh--hcCCCCeEEEEEEcCCcCHHHHHHHHHHHhCCCCCC---CCChhHHHHHHH
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVK--KDKHFDEVVFAEVSDTPDIKKVQGELADQLGMQFDE---ESDVPGRARKLY 247 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~--~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l~ 247 (1053)
..+++.|.|+.|.||||+.+.+..-.- .-+.| |.+... . -.....++..++..... .+.......++.
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~~~~la~~g~~-----vpa~~~-~-~~~~~~il~~~~l~d~~~~~lS~~~~e~~~~a 101 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGVIVLMAQIGCF-----VPCDSA-D-IPIVDCILARVGASDSQLKGVSTFMAEMLETA 101 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHHHHhCCC-----cCcccE-E-EeccceeEeeeccccchhcCcChHHHHHHHHH
Confidence 457999999999999999999875421 11212 211110 0 00112222222222111 111112222232
Q ss_pred HHHh-cCCcEEEEEcCC---CCccchh----hhcCCCCCCCCCcEEEEEecChHHHHhhC-CC---cccccCCCHH--HH
Q 037851 248 ARLQ-KENKILIILDNI---WEDLDLE----KVGVPSGNDCRGCKVLLTARDRHVLESIG-SK---TLRIDVLNDE--EA 313 (1053)
Q Consensus 248 ~~l~-~~~~~LlvlDdv---~~~~~~~----~l~~~~~~~~~gs~iivTtR~~~v~~~~~-~~---~~~l~~L~~~--~~ 313 (1053)
..+. -.++-|+++|.. .+..+-. .+...+.. ..|+.+|+||...++..... .. ..++.....+ +.
T Consensus 102 ~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~-~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~~~~~~~ 180 (222)
T cd03285 102 AILKSATENSLIIIDELGRGTSTYDGFGLAWAIAEYIAT-QIKCFCLFATHFHELTALADEVPNVKNLHVTALTDDASRT 180 (222)
T ss_pred HHHHhCCCCeEEEEecCcCCCChHHHHHHHHHHHHHHHh-cCCCeEEEEechHHHHHHhhcCCCeEEEEEEEEEeCCCCc
Confidence 3331 257889999999 3332211 11111111 24678999999776655332 11 1122111111 11
Q ss_pred HHHHHHHhCCCCCCccchHHHHHHHHHhCCCchHHHHHHHHHhc
Q 037851 314 WTLFKKMTGDCAEKGELKSIATDVAKECGGLPIAIVTLAKALRN 357 (1053)
Q Consensus 314 ~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~L~~ 357 (1053)
. .|......... -...|-++++.+ |+|-.+..-|..+..
T Consensus 181 ~-~~~Y~l~~G~~---~~s~a~~~a~~~-g~p~~vi~~A~~~~~ 219 (222)
T cd03285 181 L-TMLYKVEKGAC---DQSFGIHVAELA-NFPKEVIEMAKQKAL 219 (222)
T ss_pred E-eEEEEEeeCCC---CCcHHHHHHHHh-CcCHHHHHHHHHHHH
Confidence 0 01111111111 134577777776 899888777766643
No 483
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=92.86 E-value=0.29 Score=49.84 Aligned_cols=23 Identities=17% Similarity=0.212 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 037851 175 TITGVYGMGGLGKTTLVKEVARQ 197 (1053)
Q Consensus 175 ~vi~I~G~~GiGKTtLa~~v~~~ 197 (1053)
.+++|+|..|.||||+.+.++..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~~ 52 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGLA 52 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHHH
Confidence 79999999999999999999843
No 484
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=92.84 E-value=0.31 Score=53.08 Aligned_cols=26 Identities=31% Similarity=0.451 Sum_probs=22.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHh
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQV 198 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 198 (1053)
...+++|+|+.|.|||||.+.+....
T Consensus 27 ~Gei~~l~G~NGaGKTTLl~~l~Gl~ 52 (301)
T TIGR03522 27 KGRIVGFLGPNGAGKSTTMKIITGYL 52 (301)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 34699999999999999999998653
No 485
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=92.82 E-value=0.096 Score=50.40 Aligned_cols=26 Identities=27% Similarity=0.468 Sum_probs=23.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhc
Q 037851 176 ITGVYGMGGLGKTTLVKEVARQVKKD 201 (1053)
Q Consensus 176 vi~I~G~~GiGKTtLa~~v~~~~~~~ 201 (1053)
|++|+|+.|+||||++..+....+.+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~ 26 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKAR 26 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 58899999999999999999988743
No 486
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=92.82 E-value=0.1 Score=49.86 Aligned_cols=29 Identities=34% Similarity=0.601 Sum_probs=26.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhcC
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVKKDK 202 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~ 202 (1053)
.+|++|+|+.|.|||||...+....+.++
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G 30 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARG 30 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCC
Confidence 37999999999999999999999988654
No 487
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.81 E-value=0.066 Score=29.64 Aligned_cols=16 Identities=31% Similarity=0.692 Sum_probs=7.2
Q ss_pred CCcEEEccCCCCcccc
Q 037851 574 DLEILSLQGSKIEQLP 589 (1053)
Q Consensus 574 ~L~~L~l~~~~l~~lp 589 (1053)
+|++|++++|.++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4566666666655554
No 488
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=92.81 E-value=0.72 Score=47.13 Aligned_cols=26 Identities=31% Similarity=0.432 Sum_probs=22.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHh
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQV 198 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 198 (1053)
...+++|.|..|.|||||++.++.-.
T Consensus 33 ~G~~~~i~G~nGsGKSTLl~~l~Gl~ 58 (207)
T cd03369 33 AGEKIGIVGRTGAGKSTLILALFRFL 58 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 34689999999999999999998653
No 489
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=92.79 E-value=0.087 Score=53.04 Aligned_cols=27 Identities=33% Similarity=0.411 Sum_probs=23.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
...+++|+|.+|.||||||+.++--.+
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~~ 58 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGLEK 58 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhcccC
Confidence 447999999999999999999986544
No 490
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=92.77 E-value=0.17 Score=53.51 Aligned_cols=35 Identities=23% Similarity=0.265 Sum_probs=29.3
Q ss_pred HHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 165 LQNALLDPDVTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 165 l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
..+++...+..+|.|+|..|.|||||+..+.+...
T Consensus 95 ~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~ 129 (290)
T PRK10463 95 NRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLK 129 (290)
T ss_pred HHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 33444566789999999999999999999999875
No 491
>PRK14530 adenylate kinase; Provisional
Probab=92.72 E-value=0.098 Score=53.87 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 175 TITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 175 ~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
+.|.|+|++|+||||+|+.+++...
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999998764
No 492
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=92.72 E-value=0.42 Score=54.27 Aligned_cols=93 Identities=22% Similarity=0.296 Sum_probs=58.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCc-CHHHHHHHHHHHhCCC--------------CCCCC
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTP-DIKKVQGELADQLGMQ--------------FDEES 237 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~--------------~~~~~ 237 (1053)
+..-++|.|.+|+|||||+..+...... .+-+.++++-+.+.. ...+++.++...-... ..+++
T Consensus 160 kGQR~gIfgg~GvGKs~L~~~~~~~~~~-~~~dv~V~~lIGERgrEv~efi~~~~~~~~~~~~~~~~~rsvvv~atsd~p 238 (494)
T CHL00060 160 RGGKIGLFGGAGVGKTVLIMELINNIAK-AHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEP 238 (494)
T ss_pred cCCEEeeecCCCCChhHHHHHHHHHHHH-hcCCeEEEEEeccCchHHHHHHHHHHhcCccccCcccccceEEEEECCCCC
Confidence 4468899999999999999999887432 122778888887764 4567776666521110 01111
Q ss_pred Ch-----hHHHHHHHHHHhc-C-CcEEEEEcCCCCc
Q 037851 238 DV-----PGRARKLYARLQK-E-NKILIILDNIWED 266 (1053)
Q Consensus 238 ~~-----~~~~~~l~~~l~~-~-~~~LlvlDdv~~~ 266 (1053)
.. ...+..+-+++.. + +++||++||+-..
T Consensus 239 ~~~R~~a~~~A~tiAEyfrd~g~~~VLll~DslTR~ 274 (494)
T CHL00060 239 PGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRF 274 (494)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCEEEEcccchHH
Confidence 11 0123345566642 4 4999999999554
No 493
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=92.67 E-value=0.28 Score=51.32 Aligned_cols=96 Identities=13% Similarity=0.176 Sum_probs=55.2
Q ss_pred CeeEEEEEcCCCCcHHHHH-HHHHHHhhhcCCCCeE-EEEEEcCCc-CHHHHHHHHHHHhCCC-------CCCCCChhH-
Q 037851 173 DVTITGVYGMGGLGKTTLV-KEVARQVKKDKHFDEV-VFAEVSDTP-DIKKVQGELADQLGMQ-------FDEESDVPG- 241 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~f~~~-~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~- 241 (1053)
+..-++|.|..|+|||+|| ..+.+.. .-+.+ +++-+.+.. ...++..++...-... ..+++....
T Consensus 68 rGQr~~Ifg~~g~GKt~L~l~~i~~~~----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 143 (274)
T cd01132 68 RGQRELIIGDRQTGKTAIAIDTIINQK----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQY 143 (274)
T ss_pred cCCEEEeeCCCCCCccHHHHHHHHHhc----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHH
Confidence 3467899999999999996 5565542 23444 677776654 4566666665432111 111111111
Q ss_pred ----HHHHHHHHHh-cCCcEEEEEcCCCCc-cchhhh
Q 037851 242 ----RARKLYARLQ-KENKILIILDNIWED-LDLEKV 272 (1053)
Q Consensus 242 ----~~~~l~~~l~-~~~~~LlvlDdv~~~-~~~~~l 272 (1053)
.+-.+-+++. +++.+||++||+-.. ..+.++
T Consensus 144 ~a~~~a~aiAE~fr~~G~~Vlvl~DslTr~A~A~rEi 180 (274)
T cd01132 144 LAPYTGCAMGEYFMDNGKHALIIYDDLSKQAVAYRQM 180 (274)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEcChHHHHHHHHHH
Confidence 1223334443 479999999999654 334444
No 494
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=92.66 E-value=0.38 Score=53.98 Aligned_cols=47 Identities=26% Similarity=0.198 Sum_probs=34.8
Q ss_pred ccccchHHHHHHHHHHhc-------C-------C----CeeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 153 EAFESRMSTLKSLQNALL-------D-------P----DVTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 153 ~~~~gR~~~~~~l~~~l~-------~-------~----~~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
..++|.++.++.+...+. . + ....|.++|++|+|||++|+.++....
T Consensus 77 ~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~ 141 (413)
T TIGR00382 77 EYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILN 141 (413)
T ss_pred ceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcC
Confidence 346788888887765441 1 1 125789999999999999999997654
No 495
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=92.65 E-value=0.11 Score=52.12 Aligned_cols=25 Identities=36% Similarity=0.484 Sum_probs=22.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHh
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQV 198 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~ 198 (1053)
..+|.|.|.+|+||||+|+.++.+.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999875
No 496
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=92.64 E-value=0.095 Score=49.78 Aligned_cols=20 Identities=35% Similarity=0.582 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 037851 176 ITGVYGMGGLGKTTLVKEVA 195 (1053)
Q Consensus 176 vi~I~G~~GiGKTtLa~~v~ 195 (1053)
.|.|.|.+|+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999998
No 497
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=92.63 E-value=0.18 Score=48.31 Aligned_cols=35 Identities=20% Similarity=0.443 Sum_probs=28.5
Q ss_pred HHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHh
Q 037851 161 TLKSLQNALLDPDVTITGVYGMGGLGKTTLVKEVARQV 198 (1053)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 198 (1053)
.++++.+++.. +++.++|..|+|||||+..+....
T Consensus 25 g~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 25 GIEELKELLKG---KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp THHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CHHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhhc
Confidence 35777777754 799999999999999999887653
No 498
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=92.60 E-value=0.4 Score=54.84 Aligned_cols=124 Identities=18% Similarity=0.179 Sum_probs=67.7
Q ss_pred HHHHHHHhcCCCeeEEEEEcCCCCcHHH-HHHHHHHHhhhcCCCCeEEEEEEcCCc--CHHHHHHHHHHHhCCCCCCC--
Q 037851 162 LKSLQNALLDPDVTITGVYGMGGLGKTT-LVKEVARQVKKDKHFDEVVFAEVSDTP--DIKKVQGELADQLGMQFDEE-- 236 (1053)
Q Consensus 162 ~~~l~~~l~~~~~~vi~I~G~~GiGKTt-La~~v~~~~~~~~~f~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~~~~-- 236 (1053)
.++|++.+.++ .||.|+|..|.|||| ||+.+|.+-... .+ .|-+.++. ....+.+.+.+++++.....
T Consensus 361 R~~ll~~ir~n--~vvvivgETGSGKTTQl~QyL~edGY~~---~G--mIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VG 433 (1042)
T KOG0924|consen 361 RDQLLSVIREN--QVVVIVGETGSGKTTQLAQYLYEDGYAD---NG--MIGCTQPRRVAAISVAKRVAEEMGVTLGDTVG 433 (1042)
T ss_pred HHHHHHHHhhC--cEEEEEecCCCCchhhhHHHHHhccccc---CC--eeeecCchHHHHHHHHHHHHHHhCCccccccc
Confidence 34555555444 699999999999986 677677653211 22 23444443 34566777777776543211
Q ss_pred --------CCh--------h--HHHHHHHHHHhcCCcEEEEEcCCCCcc----chhhhcCCCCCCCCCcEEEEEecChH
Q 037851 237 --------SDV--------P--GRARKLYARLQKENKILIILDNIWEDL----DLEKVGVPSGNDCRGCKVLLTARDRH 293 (1053)
Q Consensus 237 --------~~~--------~--~~~~~l~~~l~~~~~~LlvlDdv~~~~----~~~~l~~~~~~~~~gs~iivTtR~~~ 293 (1053)
... + -+.+.+.+... .|--.||+|.+.+.. .+..+..........-|+|||+-.-+
T Consensus 434 YsIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L-~kYSviImDEAHERslNtDilfGllk~~larRrdlKliVtSATm~ 511 (1042)
T KOG0924|consen 434 YSIRFEDVTSEDTKIKYMTDGILLRESLKDRDL-DKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLIVTSATMD 511 (1042)
T ss_pred eEEEeeecCCCceeEEEeccchHHHHHhhhhhh-hheeEEEechhhhcccchHHHHHHHHHHHHhhccceEEEeecccc
Confidence 000 0 11222333333 566789999997652 12222111122234678999986543
No 499
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=92.59 E-value=0.54 Score=50.95 Aligned_cols=90 Identities=19% Similarity=0.310 Sum_probs=52.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcC-CcCHHHHHHHHHHHhCCC-------CCCCCChh----
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSD-TPDIKKVQGELADQLGMQ-------FDEESDVP---- 240 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~-------~~~~~~~~---- 240 (1053)
....++|+|..|.|||||++.+..... -+..++.-+.. ..++.++.......-+.. ..+++...
T Consensus 68 ~Gqri~I~G~sG~GKTtLl~~Ia~~~~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~ 143 (326)
T cd01136 68 KGQRLGIFAGSGVGKSTLLGMIARGTT----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKA 143 (326)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHH
Confidence 346889999999999999998887543 23444444443 345566655555432211 11111110
Q ss_pred -HHHHHHHHHHh-cCCcEEEEEcCCCCc
Q 037851 241 -GRARKLYARLQ-KENKILIILDNIWED 266 (1053)
Q Consensus 241 -~~~~~l~~~l~-~~~~~LlvlDdv~~~ 266 (1053)
...-.+-+++. +++.+|+++||+-..
T Consensus 144 ~~~a~~~AEyfr~~g~~Vll~~Dsltr~ 171 (326)
T cd01136 144 AYTATAIAEYFRDQGKDVLLLMDSLTRF 171 (326)
T ss_pred HHHHHHHHHHHHHcCCCeEEEeccchHH
Confidence 11223334442 589999999998543
No 500
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=92.59 E-value=0.28 Score=51.27 Aligned_cols=36 Identities=33% Similarity=0.401 Sum_probs=23.6
Q ss_pred HHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHh
Q 037851 161 TLKSLQNALLDPDVTITGVYGMGGLGKTTLVKEVARQV 198 (1053)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 198 (1053)
..+.+..++.... +..|+|++|.||||++..+....
T Consensus 6 Q~~Ai~~~~~~~~--~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 6 QREAIQSALSSNG--ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp HHHHHHHHCTSSE---EEEE-STTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCC--CEEEECCCCCChHHHHHHHHHHh
Confidence 3445544553332 78899999999998777777666
Done!