Query 037851
Match_columns 1053
No_of_seqs 556 out of 4668
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 07:59:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037851.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037851hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 8.8E-45 3E-49 429.4 15.5 310 156-485 131-473 (549)
2 1vt4_I APAF-1 related killer D 100.0 1.5E-36 5.2E-41 358.6 22.8 281 155-476 130-436 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 1E-35 3.5E-40 393.1 23.6 310 149-483 120-452 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 1.1E-32 3.9E-37 331.9 26.7 306 151-481 122-450 (591)
5 3vq2_A TLR4, TOLL-like recepto 100.0 1.1E-29 3.6E-34 308.1 28.6 475 502-1038 33-557 (606)
6 3t6q_A CD180 antigen; protein- 100.0 3.3E-28 1.1E-32 295.0 29.3 482 502-1037 34-558 (606)
7 1ziw_A TOLL-like receptor 3; i 100.0 7.2E-27 2.5E-31 287.1 36.1 128 502-633 26-157 (680)
8 3rgz_A Protein brassinosteroid 100.0 3E-27 1E-31 292.9 27.2 488 503-1043 202-744 (768)
9 3t6q_A CD180 antigen; protein- 100.0 6.2E-27 2.1E-31 283.7 29.2 465 518-1036 26-533 (606)
10 3vq2_A TLR4, TOLL-like recepto 100.0 1.1E-26 3.9E-31 281.4 29.6 463 503-1012 58-557 (606)
11 3rgz_A Protein brassinosteroid 99.9 1.4E-26 4.7E-31 286.9 28.6 459 524-1047 174-725 (768)
12 2z63_A TOLL-like receptor 4, v 99.9 2.6E-26 9E-31 276.3 26.3 450 502-1037 29-529 (570)
13 1ziw_A TOLL-like receptor 3; i 99.9 8.9E-26 3E-30 277.4 30.5 499 503-1037 51-620 (680)
14 3j0a_A TOLL-like receptor 5; m 99.9 1.6E-25 5.6E-30 280.3 33.2 471 502-1037 25-537 (844)
15 2z81_A CD282 antigen, TOLL-lik 99.9 2.7E-26 9.3E-31 274.6 24.3 459 503-1038 28-509 (549)
16 4ecn_A Leucine-rich repeat pro 99.9 4.5E-26 1.5E-30 279.1 23.7 360 566-1012 441-839 (876)
17 4eco_A Uncharacterized protein 99.9 1E-25 3.6E-30 272.3 24.3 385 566-1040 199-633 (636)
18 3j0a_A TOLL-like receptor 5; m 99.9 8.5E-25 2.9E-29 273.8 29.4 459 503-1039 50-560 (844)
19 2z81_A CD282 antigen, TOLL-lik 99.9 8E-25 2.8E-29 261.9 27.7 449 518-1043 19-489 (549)
20 2z7x_B TOLL-like receptor 1, v 99.9 6.1E-25 2.1E-29 260.8 25.3 448 504-1037 3-479 (520)
21 2z63_A TOLL-like receptor 4, v 99.9 1E-24 3.5E-29 262.4 27.2 437 503-1012 54-530 (570)
22 4eco_A Uncharacterized protein 99.9 9.1E-25 3.1E-29 264.1 22.0 355 542-984 197-602 (636)
23 4g8a_A TOLL-like receptor 4; l 99.9 1.1E-23 3.9E-28 257.1 30.4 128 502-633 53-185 (635)
24 2z7x_B TOLL-like receptor 1, v 99.9 6E-24 2E-28 252.3 24.0 430 531-1045 3-462 (520)
25 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 2.3E-23 8E-28 249.2 27.7 450 504-1037 34-508 (562)
26 4ecn_A Leucine-rich repeat pro 99.9 2.3E-23 7.7E-28 255.3 25.9 142 519-675 440-614 (876)
27 1o6v_A Internalin A; bacterial 99.9 4.5E-22 1.6E-26 231.9 29.6 342 527-979 45-386 (466)
28 4g8a_A TOLL-like receptor 4; l 99.9 5E-22 1.7E-26 242.6 29.9 141 518-672 45-189 (635)
29 3v47_A TOLL-like receptor 5B a 99.9 3.9E-22 1.3E-26 232.5 25.1 130 528-669 30-167 (455)
30 1o6v_A Internalin A; bacterial 99.9 1.8E-21 6.3E-26 226.8 29.6 343 503-958 48-390 (466)
31 3v47_A TOLL-like receptor 5B a 99.9 5.3E-22 1.8E-26 231.3 23.0 366 502-980 31-407 (455)
32 1jl5_A Outer protein YOPM; leu 99.9 3.8E-22 1.3E-26 230.0 20.0 395 503-1038 13-428 (454)
33 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.3E-21 4.5E-26 234.0 25.2 435 527-1045 30-491 (562)
34 3bz5_A Internalin-J, INLJ; leu 99.9 2.1E-21 7.3E-26 224.0 21.9 121 524-666 38-158 (457)
35 4fmz_A Internalin; leucine ric 99.9 8E-21 2.7E-25 212.6 25.6 301 503-926 46-346 (347)
36 2id5_A Lingo-1, leucine rich r 99.9 1.1E-20 3.8E-25 221.4 24.1 135 519-668 26-164 (477)
37 3o6n_A APL1; leucine-rich repe 99.9 1.1E-20 3.9E-25 214.9 22.5 131 526-668 43-177 (390)
38 4fmz_A Internalin; leucine ric 99.9 4.1E-20 1.4E-24 206.8 26.4 278 502-869 67-344 (347)
39 3bz5_A Internalin-J, INLJ; leu 99.9 1.2E-20 4.2E-25 217.6 21.6 143 503-672 44-186 (457)
40 3o6n_A APL1; leucine-rich repe 99.9 1.5E-20 5.3E-25 213.8 21.3 302 502-870 46-351 (390)
41 1jl5_A Outer protein YOPM; leu 99.8 1.3E-20 4.5E-25 217.2 19.6 235 530-837 73-307 (454)
42 3oja_B Anopheles plasmodium-re 99.8 2.8E-20 9.6E-25 223.6 21.4 301 503-870 53-357 (597)
43 3oja_B Anopheles plasmodium-re 99.8 5E-20 1.7E-24 221.3 22.5 132 526-669 49-184 (597)
44 2id5_A Lingo-1, leucine rich r 99.8 1.8E-19 6.3E-24 211.0 24.5 295 502-869 33-331 (477)
45 4fcg_A Uncharacterized protein 99.8 5.2E-19 1.8E-23 195.0 19.6 223 526-837 79-311 (328)
46 3ogk_B Coronatine-insensitive 99.8 1.9E-20 6.4E-25 226.2 4.3 383 526-979 110-524 (592)
47 1xku_A Decorin; proteoglycan, 99.8 1E-17 3.6E-22 185.6 25.8 141 519-674 46-189 (330)
48 2ft3_A Biglycan; proteoglycan, 99.8 4.6E-18 1.6E-22 188.6 22.6 140 519-674 48-190 (332)
49 2ft3_A Biglycan; proteoglycan, 99.8 5.4E-18 1.8E-22 188.0 23.0 123 528-667 33-158 (332)
50 1xku_A Decorin; proteoglycan, 99.8 1.3E-17 4.4E-22 184.8 23.9 124 527-667 30-156 (330)
51 3ogk_B Coronatine-insensitive 99.8 1E-19 3.4E-24 219.8 4.2 438 519-1036 64-548 (592)
52 1ogq_A PGIP-2, polygalacturona 99.7 1E-17 3.5E-22 183.6 12.8 128 528-667 50-185 (313)
53 4fcg_A Uncharacterized protein 99.7 6.7E-17 2.3E-21 178.1 18.9 230 549-866 79-309 (328)
54 1ogq_A PGIP-2, polygalacturona 99.7 2.6E-17 8.9E-22 180.3 14.6 152 502-667 51-208 (313)
55 2p1m_B Transport inhibitor res 99.7 1.2E-18 4E-23 210.6 4.0 138 519-666 57-221 (594)
56 2p1m_B Transport inhibitor res 99.7 8.7E-19 3E-23 211.7 -2.4 388 524-980 101-518 (594)
57 1z7x_W Ribonuclease inhibitor; 99.7 1.1E-18 3.7E-23 203.7 -1.7 374 528-979 3-409 (461)
58 3g06_A SSPH2 (leucine-rich rep 99.7 1.1E-15 3.7E-20 181.4 23.6 259 503-843 42-300 (622)
59 2z80_A TOLL-like receptor 2, v 99.7 3.1E-16 1.1E-20 175.4 16.1 263 518-840 45-314 (353)
60 3zyi_A Leucine-rich repeat-con 99.7 6.5E-16 2.2E-20 179.0 19.1 135 519-667 69-207 (452)
61 3zyi_A Leucine-rich repeat-con 99.7 1.1E-15 3.6E-20 177.3 18.0 152 502-669 76-231 (452)
62 3zyj_A Leucine-rich repeat-con 99.7 1.2E-15 4.3E-20 176.0 18.3 139 519-671 58-200 (440)
63 2z66_A Variable lymphocyte rec 99.6 1.1E-15 3.8E-20 167.3 16.5 133 519-666 22-160 (306)
64 1z7x_W Ribonuclease inhibitor; 99.6 2.9E-18 9.8E-23 200.1 -4.4 156 503-668 5-182 (461)
65 3zyj_A Leucine-rich repeat-con 99.6 3.2E-15 1.1E-19 172.5 20.9 243 529-838 44-290 (440)
66 2z80_A TOLL-like receptor 2, v 99.6 3.4E-16 1.2E-20 175.1 11.1 249 502-785 53-312 (353)
67 2z66_A Variable lymphocyte rec 99.6 1.1E-15 3.8E-20 167.3 13.9 153 502-668 29-187 (306)
68 1ozn_A Reticulon 4 receptor; N 99.6 8.1E-15 2.8E-19 158.5 19.2 124 531-667 14-140 (285)
69 1ozn_A Reticulon 4 receptor; N 99.6 1.1E-14 3.8E-19 157.4 18.0 136 519-669 26-166 (285)
70 2qen_A Walker-type ATPase; unk 99.6 4E-14 1.4E-18 158.3 22.7 293 149-477 8-349 (350)
71 3g06_A SSPH2 (leucine-rich rep 99.6 3.6E-14 1.2E-18 168.3 22.8 235 501-812 61-295 (622)
72 3o53_A Protein LRIM1, AGAP0063 99.6 1E-15 3.5E-20 168.1 7.9 251 521-817 27-278 (317)
73 3o53_A Protein LRIM1, AGAP0063 99.6 5E-16 1.7E-20 170.6 4.4 263 528-843 10-278 (317)
74 2fna_A Conserved hypothetical 99.6 1.6E-13 5.6E-18 153.8 23.5 290 150-476 10-356 (357)
75 3rfs_A Internalin B, repeat mo 99.6 2.5E-14 8.5E-19 153.2 15.4 134 525-671 38-172 (272)
76 1h6u_A Internalin H; cell adhe 99.5 4.1E-14 1.4E-18 154.3 15.9 125 526-668 39-163 (308)
77 1wwl_A Monocyte differentiatio 99.5 3.1E-15 1E-19 163.9 6.8 136 519-667 57-212 (312)
78 2o6q_A Variable lymphocyte rec 99.5 1.2E-13 4E-18 147.9 18.7 130 528-669 37-170 (270)
79 1w5s_A Origin recognition comp 99.5 1.6E-13 5.4E-18 157.2 19.9 290 153-460 22-370 (412)
80 1p9a_G Platelet glycoprotein I 99.5 9.9E-14 3.4E-18 149.7 16.3 181 519-757 25-206 (290)
81 2z62_A TOLL-like receptor 4, v 99.5 9.2E-14 3.1E-18 149.4 15.6 140 519-672 22-165 (276)
82 3oja_A Leucine-rich immune mol 99.5 3.7E-14 1.3E-18 165.0 13.2 236 527-835 33-270 (487)
83 2z62_A TOLL-like receptor 4, v 99.5 2.9E-13 9.9E-18 145.4 18.4 123 533-669 12-137 (276)
84 2o6q_A Variable lymphocyte rec 99.5 3.4E-13 1.2E-17 144.2 18.5 195 529-757 17-216 (270)
85 3oja_A Leucine-rich immune mol 99.5 1E-13 3.6E-18 161.2 15.5 224 542-840 21-250 (487)
86 1h6u_A Internalin H; cell adhe 99.5 2.3E-13 8E-18 148.3 17.2 186 503-757 43-228 (308)
87 1p9a_G Platelet glycoprotein I 99.5 2.6E-13 9E-18 146.3 17.3 199 524-785 6-206 (290)
88 2xwt_C Thyrotropin receptor; s 99.5 5.9E-14 2E-18 147.2 10.5 195 528-785 31-237 (239)
89 2xwt_C Thyrotropin receptor; s 99.5 2.9E-13 9.8E-18 141.9 15.1 210 537-814 20-239 (239)
90 2ast_B S-phase kinase-associat 99.5 1.9E-14 6.5E-19 159.8 5.3 104 528-631 70-178 (336)
91 3rfs_A Internalin B, repeat mo 99.5 2.9E-13 9.8E-18 144.9 13.7 130 529-672 20-149 (272)
92 4ay9_X Follicle-stimulating ho 99.5 7.3E-13 2.5E-17 147.5 17.5 241 531-839 12-258 (350)
93 2ast_B S-phase kinase-associat 99.5 2.1E-14 7.3E-19 159.4 4.9 223 530-811 49-282 (336)
94 1wwl_A Monocyte differentiatio 99.5 2.6E-13 9E-18 148.5 13.5 195 503-757 97-307 (312)
95 3m19_A Variable lymphocyte rec 99.4 1.1E-12 3.9E-17 138.4 16.4 105 528-633 35-143 (251)
96 4ay9_X Follicle-stimulating ho 99.4 1.7E-12 5.7E-17 144.6 18.2 250 544-867 3-255 (350)
97 3m19_A Variable lymphocyte rec 99.4 1.3E-12 4.4E-17 138.0 14.6 152 502-668 36-191 (251)
98 1h6t_A Internalin B; cell adhe 99.4 1.3E-12 4.5E-17 141.0 13.1 127 525-669 43-169 (291)
99 4ezg_A Putative uncharacterize 99.4 1.4E-12 4.8E-17 132.0 11.8 144 503-667 46-192 (197)
100 2ell_A Acidic leucine-rich nuc 99.4 1.6E-12 5.5E-17 127.8 11.8 136 527-674 23-165 (168)
101 4ezg_A Putative uncharacterize 99.4 4.3E-12 1.5E-16 128.3 14.0 147 525-686 41-189 (197)
102 2v9t_B SLIT homolog 2 protein 99.4 3.8E-12 1.3E-16 131.0 13.2 135 518-667 25-163 (220)
103 1m9s_A Internalin B; cell inva 99.4 2E-12 6.8E-17 153.3 12.5 128 524-669 61-188 (605)
104 1h6t_A Internalin B; cell adhe 99.3 9E-12 3.1E-16 134.4 16.2 161 503-686 48-208 (291)
105 2ca6_A RAN GTPase-activating p 99.3 1.6E-13 5.4E-18 155.4 1.9 104 529-633 10-134 (386)
106 2v70_A SLIT-2, SLIT homolog 2 99.3 8.1E-12 2.8E-16 128.6 13.6 145 505-667 15-164 (220)
107 2ca6_A RAN GTPase-activating p 99.3 7.1E-13 2.4E-17 150.1 5.9 262 524-836 28-339 (386)
108 4glp_A Monocyte differentiatio 99.3 4E-12 1.4E-16 139.0 11.5 201 527-757 90-305 (310)
109 4glp_A Monocyte differentiatio 99.3 6.5E-12 2.2E-16 137.2 12.5 224 527-784 63-304 (310)
110 2v9t_B SLIT homolog 2 protein 99.3 1.4E-11 5E-16 126.7 14.1 129 531-673 14-145 (220)
111 2qby_B CDC6 homolog 3, cell di 99.3 2.3E-10 7.8E-15 129.4 25.1 281 153-460 20-338 (384)
112 3e6j_A Variable lymphocyte rec 99.3 1.4E-11 4.7E-16 127.8 13.7 135 519-669 34-172 (229)
113 2v1u_A Cell division control p 99.3 1E-10 3.5E-15 132.5 21.8 287 153-460 19-350 (387)
114 2je0_A Acidic leucine-rich nuc 99.3 3.7E-12 1.2E-16 122.4 8.2 126 526-663 15-147 (149)
115 3e6j_A Variable lymphocyte rec 99.3 3.8E-11 1.3E-15 124.5 14.3 129 530-673 21-152 (229)
116 1xeu_A Internalin C; cellular 99.2 2.3E-11 7.9E-16 128.9 12.3 143 503-669 43-185 (263)
117 2v70_A SLIT-2, SLIT homolog 2 99.2 1.9E-11 6.5E-16 125.8 11.3 128 503-633 34-165 (220)
118 1xeu_A Internalin C; cellular 99.2 5.2E-11 1.8E-15 126.2 14.9 146 524-688 37-182 (263)
119 1a9n_A U2A', U2A'; complex (nu 99.2 1.6E-11 5.3E-16 121.7 10.0 134 524-667 15-151 (176)
120 1m9s_A Internalin B; cell inva 99.2 3.7E-11 1.3E-15 142.4 14.5 147 503-672 67-213 (605)
121 2o6s_A Variable lymphocyte rec 99.2 6.3E-11 2.1E-15 121.0 14.2 134 519-667 22-159 (208)
122 2qby_A CDC6 homolog 1, cell di 99.2 2.1E-10 7.2E-15 129.8 18.8 288 152-460 19-347 (386)
123 3cvr_A Invasion plasmid antige 99.2 8.6E-11 2.9E-15 137.5 15.7 137 503-673 61-197 (571)
124 2o6s_A Variable lymphocyte rec 99.2 7E-11 2.4E-15 120.6 13.1 128 502-633 29-160 (208)
125 2xot_A Amphoterin-induced prot 99.2 4.1E-11 1.4E-15 133.9 12.3 103 530-633 41-148 (361)
126 3goz_A Leucine-rich repeat-con 99.2 3.6E-12 1.2E-16 142.6 3.5 139 521-667 15-178 (362)
127 2wfh_A SLIT homolog 2 protein 99.2 7.1E-11 2.4E-15 118.6 12.5 112 518-633 24-138 (193)
128 1w8a_A SLIT protein; signaling 99.2 6.2E-11 2.1E-15 119.0 11.5 111 519-633 23-138 (192)
129 1fnn_A CDC6P, cell division co 99.2 8.7E-10 3E-14 124.8 22.2 287 153-461 17-351 (389)
130 1w8a_A SLIT protein; signaling 99.2 5.1E-11 1.7E-15 119.7 10.3 123 531-667 11-137 (192)
131 2xot_A Amphoterin-induced prot 99.2 4.2E-11 1.4E-15 133.8 10.0 150 503-667 41-200 (361)
132 3goz_A Leucine-rich repeat-con 99.2 1.6E-11 5.5E-16 137.4 6.5 100 533-633 3-121 (362)
133 2wfh_A SLIT homolog 2 protein 99.2 1.3E-10 4.4E-15 116.7 11.7 123 531-667 13-137 (193)
134 2ell_A Acidic leucine-rich nuc 99.1 7.4E-11 2.5E-15 115.8 8.9 128 502-633 25-159 (168)
135 3qfl_A MLA10; coiled-coil, (CC 99.1 6.3E-11 2.2E-15 105.7 6.5 65 29-93 16-81 (115)
136 1njg_A DNA polymerase III subu 99.1 5.8E-10 2E-14 117.3 15.1 197 151-355 21-231 (250)
137 2je0_A Acidic leucine-rich nuc 99.1 8.2E-11 2.8E-15 112.9 7.7 124 502-629 18-148 (149)
138 2chg_A Replication factor C sm 99.1 5.9E-10 2E-14 115.4 14.7 188 151-355 15-207 (226)
139 1dce_A Protein (RAB geranylger 99.1 2.3E-10 8E-15 134.7 11.4 101 530-633 443-545 (567)
140 4b8c_D Glucose-repressible alc 99.1 1.4E-10 4.6E-15 141.4 9.3 114 519-634 215-329 (727)
141 2o6r_A Variable lymphocyte rec 99.1 8.9E-10 3.1E-14 109.1 12.5 105 528-633 28-136 (177)
142 2r9u_A Variable lymphocyte rec 99.0 7E-10 2.4E-14 109.1 10.6 100 531-633 15-117 (174)
143 2o6r_A Variable lymphocyte rec 99.0 1.1E-09 3.7E-14 108.5 12.0 125 530-668 9-136 (177)
144 1a9n_A U2A', U2A'; complex (nu 99.0 4.2E-10 1.5E-14 111.2 9.0 126 502-633 20-152 (176)
145 3g39_A Variable lymphocyte rec 99.0 7.5E-10 2.6E-14 108.5 10.4 101 530-633 11-114 (170)
146 3cvr_A Invasion plasmid antige 99.0 1.9E-09 6.6E-14 126.1 15.5 111 503-633 82-192 (571)
147 1dce_A Protein (RAB geranylger 99.0 9.7E-10 3.3E-14 129.4 11.4 120 503-628 443-567 (567)
148 1ds9_A Outer arm dynein; leuci 98.9 2.2E-11 7.6E-16 123.2 -4.2 136 523-662 43-180 (198)
149 4b8c_D Glucose-repressible alc 98.9 1.5E-09 5E-14 132.2 8.3 123 534-670 207-330 (727)
150 1sxj_B Activator 1 37 kDa subu 98.8 1.2E-08 4E-13 112.2 12.4 188 151-354 19-212 (323)
151 1ds9_A Outer arm dynein; leuci 98.8 1.9E-10 6.7E-15 116.2 -2.1 125 530-667 25-151 (198)
152 3te6_A Regulatory protein SIR3 98.8 5.9E-08 2E-12 103.4 15.8 169 154-322 21-212 (318)
153 1hqc_A RUVB; extended AAA-ATPa 98.8 3.2E-08 1.1E-12 108.7 12.3 173 152-355 11-214 (324)
154 2r9u_A Variable lymphocyte rec 98.7 3.2E-08 1.1E-12 97.1 10.6 92 518-613 26-121 (174)
155 1iqp_A RFCS; clamp loader, ext 98.7 2.2E-08 7.5E-13 110.2 9.9 186 152-356 24-216 (327)
156 3g39_A Variable lymphocyte rec 98.7 3.4E-08 1.2E-12 96.6 10.0 99 505-610 13-115 (170)
157 2ifg_A High affinity nerve gro 98.6 9E-08 3.1E-12 106.2 10.2 99 532-633 12-115 (347)
158 2chq_A Replication factor C sm 98.5 4.6E-07 1.6E-11 99.1 13.9 185 151-354 15-206 (319)
159 1jbk_A CLPB protein; beta barr 98.4 1.8E-07 6.3E-12 93.7 6.0 151 152-317 21-194 (195)
160 1jr3_A DNA polymerase III subu 98.4 1.6E-06 5.4E-11 97.2 13.8 193 152-353 15-222 (373)
161 3h4m_A Proteasome-activating n 98.4 4E-06 1.4E-10 89.8 15.6 178 150-350 14-229 (285)
162 3sb4_A Hypothetical leucine ri 98.3 2.2E-06 7.7E-11 93.9 13.0 264 527-834 48-328 (329)
163 2ifg_A High affinity nerve gro 98.3 1.1E-06 3.7E-11 97.4 9.1 90 518-610 23-116 (347)
164 3sb4_A Hypothetical leucine ri 98.3 2.3E-06 7.9E-11 93.8 11.5 64 518-582 83-157 (329)
165 3bos_A Putative DNA replicatio 98.3 5.2E-07 1.8E-11 94.2 5.8 173 152-353 27-218 (242)
166 4fdw_A Leucine rich hypothetic 98.3 3.1E-05 1.1E-09 86.7 20.5 107 519-631 127-236 (401)
167 1d2n_A N-ethylmaleimide-sensit 98.2 1.3E-05 4.5E-10 85.0 15.4 192 154-372 34-262 (272)
168 1sxj_D Activator 1 41 kDa subu 98.2 3.7E-06 1.3E-10 93.3 11.5 195 151-352 35-235 (353)
169 1sxj_A Activator 1 95 kDa subu 98.2 1.1E-05 3.7E-10 93.9 15.4 193 150-354 36-255 (516)
170 2qz4_A Paraplegin; AAA+, SPG7, 98.2 2.2E-05 7.4E-10 82.9 16.1 180 152-352 5-222 (262)
171 1xwi_A SKD1 protein; VPS4B, AA 98.2 4.3E-05 1.5E-09 82.9 18.5 183 150-353 9-224 (322)
172 2z4s_A Chromosomal replication 98.2 8.3E-06 2.8E-10 92.5 13.3 182 152-350 104-304 (440)
173 3pvs_A Replication-associated 98.2 1.9E-05 6.4E-10 89.3 15.6 177 151-354 24-217 (447)
174 3un9_A NLR family member X1; l 98.2 4.3E-07 1.5E-11 100.8 1.9 134 527-668 100-251 (372)
175 3eie_A Vacuolar protein sortin 98.1 3.4E-05 1.2E-09 83.9 16.4 182 149-352 14-228 (322)
176 3e4g_A ATP synthase subunit S, 98.1 7.5E-07 2.6E-11 85.5 2.5 90 913-1015 61-154 (176)
177 3e4g_A ATP synthase subunit S, 98.1 1.3E-06 4.3E-11 83.9 4.0 92 942-1041 61-154 (176)
178 3d8b_A Fidgetin-like protein 1 98.1 4.3E-05 1.5E-09 84.3 16.5 181 151-353 82-296 (357)
179 1sxj_E Activator 1 40 kDa subu 98.1 7.2E-06 2.5E-10 91.0 9.9 195 151-353 12-238 (354)
180 3syl_A Protein CBBX; photosynt 98.1 1.3E-05 4.5E-10 86.9 11.5 152 154-322 32-218 (309)
181 3b9p_A CG5977-PA, isoform A; A 98.0 0.00013 4.5E-09 78.4 17.7 180 150-352 18-233 (297)
182 2qp9_X Vacuolar protein sortin 98.0 9.9E-05 3.4E-09 81.2 16.8 180 151-352 49-261 (355)
183 3u61_B DNA polymerase accessor 98.0 2.3E-05 7.8E-10 85.6 11.5 178 150-351 23-215 (324)
184 4fdw_A Leucine rich hypothetic 98.0 5.8E-05 2E-09 84.5 15.0 130 519-667 149-282 (401)
185 1a5t_A Delta prime, HOLB; zinc 98.0 5.8E-05 2E-09 82.4 14.6 168 159-351 8-204 (334)
186 2zan_A Vacuolar protein sortin 98.0 0.00013 4.6E-09 82.7 17.7 183 149-352 130-345 (444)
187 4fs7_A Uncharacterized protein 98.0 0.00026 8.8E-09 79.5 19.7 107 519-630 62-194 (394)
188 2p65_A Hypothetical protein PF 98.0 1.3E-05 4.5E-10 79.5 8.0 48 152-199 21-68 (187)
189 3vfd_A Spastin; ATPase, microt 98.0 0.00013 4.4E-09 81.6 17.0 181 149-351 111-325 (389)
190 3pfi_A Holliday junction ATP-d 98.0 3.2E-05 1.1E-09 85.1 11.8 172 151-352 27-227 (338)
191 4b4t_J 26S protease regulatory 97.9 0.00012 4.1E-09 79.8 15.5 175 148-345 143-354 (405)
192 3un9_A NLR family member X1; l 97.9 6.7E-07 2.3E-11 99.3 -2.6 134 527-668 71-223 (372)
193 1sxj_C Activator 1 40 kDa subu 97.9 4.7E-05 1.6E-09 83.6 12.1 181 150-348 22-208 (340)
194 2ra8_A Uncharacterized protein 97.9 2E-05 6.7E-10 86.7 8.5 16 651-666 167-182 (362)
195 3pxg_A Negative regulator of g 97.9 4.5E-05 1.5E-09 87.3 11.3 149 151-322 178-339 (468)
196 3uk6_A RUVB-like 2; hexameric 97.9 5.5E-05 1.9E-09 84.3 11.8 193 152-351 43-302 (368)
197 3cf0_A Transitional endoplasmi 97.8 0.0004 1.4E-08 74.5 18.0 175 150-347 12-223 (301)
198 1l8q_A Chromosomal replication 97.8 7.2E-05 2.5E-09 81.5 12.0 165 161-347 22-203 (324)
199 4b4t_L 26S protease subunit RP 97.8 0.00026 8.9E-09 78.7 15.3 174 149-345 177-387 (437)
200 1qvr_A CLPB protein; coiled co 97.8 4.8E-05 1.6E-09 94.3 10.2 156 150-321 167-345 (854)
201 4b4t_H 26S protease regulatory 97.7 0.00071 2.4E-08 74.8 17.5 172 151-345 207-415 (467)
202 4b4t_I 26S protease regulatory 97.7 0.00062 2.1E-08 74.5 16.7 175 148-345 177-388 (437)
203 1io0_A Tropomodulin; LRR prote 97.7 1.2E-05 4E-10 79.5 2.6 110 523-633 31-163 (185)
204 4b4t_M 26S protease regulatory 97.6 0.00042 1.4E-08 76.9 13.7 175 148-345 176-387 (434)
205 3n70_A Transport activator; si 97.6 2.4E-05 8.4E-10 73.7 3.2 46 154-199 2-49 (145)
206 2ra8_A Uncharacterized protein 97.6 2.4E-05 8.1E-10 86.0 3.2 136 522-667 166-318 (362)
207 3rw6_A Nuclear RNA export fact 97.6 6.8E-05 2.3E-09 77.8 6.4 77 526-602 168-257 (267)
208 3ec2_A DNA replication protein 97.6 4.4E-05 1.5E-09 75.1 4.7 117 158-292 19-143 (180)
209 1r6b_X CLPA protein; AAA+, N-t 97.5 0.001 3.4E-08 81.7 17.2 156 151-321 184-362 (758)
210 3pxi_A Negative regulator of g 97.5 0.00023 8E-09 87.1 11.3 149 151-322 178-339 (758)
211 4b4t_K 26S protease regulatory 97.5 0.0022 7.4E-08 71.2 17.6 175 148-345 167-379 (428)
212 2gno_A DNA polymerase III, gam 97.5 0.00034 1.2E-08 74.6 10.4 144 159-321 3-152 (305)
213 1lv7_A FTSH; alpha/beta domain 97.5 0.00098 3.3E-08 69.7 13.6 177 150-349 9-222 (257)
214 3rw6_A Nuclear RNA export fact 97.4 3.9E-05 1.3E-09 79.6 2.0 60 571-633 168-232 (267)
215 3hu3_A Transitional endoplasmi 97.4 0.0015 5.1E-08 74.5 14.7 176 152-350 203-413 (489)
216 1in4_A RUVB, holliday junction 97.3 0.0029 9.8E-08 68.9 15.5 172 151-352 23-223 (334)
217 4fcw_A Chaperone protein CLPB; 97.3 0.00037 1.3E-08 75.4 8.4 105 154-266 18-131 (311)
218 1ofh_A ATP-dependent HSL prote 97.3 0.0013 4.5E-08 71.0 12.3 46 154-199 16-75 (310)
219 2ce7_A Cell division protein F 97.3 0.0026 8.8E-08 71.9 14.6 172 151-345 14-221 (476)
220 1io0_A Tropomodulin; LRR prote 97.2 0.00015 5E-09 71.6 3.4 116 544-667 29-162 (185)
221 2bjv_A PSP operon transcriptio 97.2 0.00027 9.3E-09 74.4 5.6 61 153-215 6-68 (265)
222 2w58_A DNAI, primosome compone 97.2 0.00051 1.8E-08 68.8 7.1 115 159-292 35-159 (202)
223 2r62_A Cell division protease 97.1 0.00024 8.1E-09 75.0 3.4 150 152-322 10-197 (268)
224 3pxi_A Negative regulator of g 97.1 0.00048 1.6E-08 84.3 6.5 147 153-321 491-675 (758)
225 1ojl_A Transcriptional regulat 97.0 0.0007 2.4E-08 72.5 6.2 46 154-199 3-50 (304)
226 4fs7_A Uncharacterized protein 97.0 0.012 4.1E-07 65.8 16.7 265 518-837 84-376 (394)
227 4gt6_A Cell surface protein; l 97.0 0.1 3.5E-06 58.1 24.2 106 718-838 263-368 (394)
228 2kjq_A DNAA-related protein; s 96.9 0.00065 2.2E-08 63.9 5.0 40 173-214 35-74 (149)
229 3co5_A Putative two-component 96.9 0.00012 4.1E-09 68.7 -0.4 45 154-198 5-51 (143)
230 3m6a_A ATP-dependent protease 96.9 0.011 3.7E-07 68.7 15.4 153 154-321 82-266 (543)
231 3t15_A Ribulose bisphosphate c 96.8 0.0011 3.7E-08 70.6 6.2 26 174-199 36-61 (293)
232 2c9o_A RUVB-like 1; hexameric 96.8 0.004 1.4E-07 71.0 11.1 48 152-199 36-88 (456)
233 1qvr_A CLPB protein; coiled co 96.8 0.0079 2.7E-07 74.4 14.4 46 154-199 559-613 (854)
234 3cf2_A TER ATPase, transitiona 96.7 0.0036 1.2E-07 75.0 10.1 173 152-347 203-409 (806)
235 2x8a_A Nuclear valosin-contain 96.7 0.012 4.2E-07 61.6 13.0 150 152-322 9-192 (274)
236 1ixz_A ATP-dependent metallopr 96.7 0.013 4.4E-07 60.9 12.8 173 150-345 13-221 (254)
237 1iy2_A ATP-dependent metallopr 96.5 0.019 6.4E-07 60.6 13.1 174 149-345 36-245 (278)
238 2vhj_A Ntpase P4, P4; non- hyd 96.3 0.0028 9.6E-08 66.6 4.6 68 175-265 124-193 (331)
239 1r6b_X CLPA protein; AAA+, N-t 96.2 0.0056 1.9E-07 75.0 7.7 102 154-266 459-569 (758)
240 2dhr_A FTSH; AAA+ protein, hex 96.2 0.028 9.5E-07 63.9 12.6 169 151-345 29-236 (499)
241 2w0m_A SSO2452; RECA, SSPF, un 96.1 0.0099 3.4E-07 60.8 8.1 47 174-224 23-69 (235)
242 1n0w_A DNA repair protein RAD5 96.1 0.016 5.6E-07 59.6 9.7 92 174-266 24-131 (243)
243 2cvh_A DNA repair and recombin 96.0 0.019 6.4E-07 58.1 9.5 44 174-222 20-63 (220)
244 3io5_A Recombination and repai 96.0 0.029 9.8E-07 58.7 10.6 86 176-266 30-123 (333)
245 3hr8_A Protein RECA; alpha and 96.0 0.022 7.6E-07 61.5 10.0 86 174-266 61-151 (356)
246 1v5w_A DMC1, meiotic recombina 95.9 0.038 1.3E-06 60.1 11.5 92 173-265 121-230 (343)
247 2z43_A DNA repair and recombin 95.8 0.035 1.2E-06 59.9 11.0 91 174-265 107-214 (324)
248 3lw7_A Adenylate kinase relate 95.8 0.038 1.3E-06 53.4 10.0 22 175-197 2-23 (179)
249 2xxa_A Signal recognition part 95.7 0.51 1.8E-05 52.5 19.9 90 173-263 99-192 (433)
250 2qgz_A Helicase loader, putati 95.7 0.011 3.7E-07 63.2 6.1 54 158-213 133-190 (308)
251 1xp8_A RECA protein, recombina 95.5 0.043 1.5E-06 59.8 10.2 85 174-265 74-163 (366)
252 2i1q_A DNA repair and recombin 95.5 0.028 9.7E-07 60.6 8.8 90 174-264 98-214 (322)
253 3dm5_A SRP54, signal recogniti 95.5 0.58 2E-05 51.9 19.2 29 173-201 99-127 (443)
254 1ypw_A Transitional endoplasmi 95.4 0.028 9.6E-07 68.6 9.2 171 151-345 202-407 (806)
255 2zr9_A Protein RECA, recombina 95.4 0.039 1.3E-06 59.8 9.4 85 174-265 61-150 (349)
256 1u94_A RECA protein, recombina 95.4 0.041 1.4E-06 59.7 9.3 84 174-265 63-152 (356)
257 1rz3_A Hypothetical protein rb 95.3 0.018 6E-07 57.4 5.8 44 157-200 2-48 (201)
258 3ice_A Transcription terminati 95.2 0.03 1E-06 60.1 7.3 98 164-266 163-273 (422)
259 1jr3_D DNA polymerase III, del 95.2 0.11 3.9E-06 56.4 12.3 157 172-351 16-184 (343)
260 3kl4_A SRP54, signal recogniti 95.0 0.42 1.4E-05 53.0 16.1 39 173-213 96-134 (433)
261 3c8u_A Fructokinase; YP_612366 95.0 0.026 8.9E-07 56.4 5.9 41 160-200 6-48 (208)
262 3lda_A DNA repair protein RAD5 94.9 0.058 2E-06 59.5 8.8 90 174-264 178-283 (400)
263 2px0_A Flagellar biosynthesis 94.7 0.083 2.8E-06 55.8 9.2 87 173-263 104-191 (296)
264 4a74_A DNA repair and recombin 94.7 0.091 3.1E-06 53.3 9.4 56 174-230 25-84 (231)
265 2ck3_D ATP synthase subunit be 94.5 0.2 6.9E-06 55.5 11.8 101 164-265 142-264 (482)
266 1sky_E F1-ATPase, F1-ATP synth 94.4 0.077 2.6E-06 59.0 8.3 90 175-265 152-256 (473)
267 1qhx_A CPT, protein (chloramph 94.4 0.023 7.7E-07 55.2 3.7 25 175-199 4-28 (178)
268 3kb2_A SPBC2 prophage-derived 94.4 0.025 8.4E-07 54.6 3.8 25 175-199 2-26 (173)
269 3bh0_A DNAB-like replicative h 94.3 0.23 7.9E-06 53.1 11.6 51 174-228 68-118 (315)
270 4gt6_A Cell surface protein; l 94.3 0.13 4.3E-06 57.3 9.9 108 521-632 258-368 (394)
271 3vaa_A Shikimate kinase, SK; s 94.2 0.028 9.6E-07 55.7 4.0 27 173-199 24-50 (199)
272 3trf_A Shikimate kinase, SK; a 94.0 0.033 1.1E-06 54.5 3.8 26 174-199 5-30 (185)
273 1fx0_B ATP synthase beta chain 93.9 0.16 5.5E-06 56.5 9.5 100 165-265 155-277 (498)
274 3fwy_A Light-independent proto 93.9 0.04 1.4E-06 58.7 4.6 41 172-214 46-86 (314)
275 2ga8_A Hypothetical 39.9 kDa p 93.8 0.068 2.3E-06 57.1 6.1 42 158-199 4-49 (359)
276 3uie_A Adenylyl-sulfate kinase 93.8 0.04 1.4E-06 54.6 4.2 29 171-199 22-50 (200)
277 2dr3_A UPF0273 protein PH0284; 93.8 0.19 6.6E-06 51.5 9.5 39 174-214 23-61 (247)
278 1kgd_A CASK, peripheral plasma 93.8 0.037 1.3E-06 53.8 3.7 26 174-199 5-30 (180)
279 1kag_A SKI, shikimate kinase I 93.7 0.032 1.1E-06 53.8 3.2 25 175-199 5-29 (173)
280 2hf9_A Probable hydrogenase ni 93.7 0.054 1.9E-06 54.9 5.1 38 162-199 26-63 (226)
281 1zp6_A Hypothetical protein AT 93.7 0.036 1.2E-06 54.5 3.6 25 173-197 8-32 (191)
282 1xjc_A MOBB protein homolog; s 93.6 0.05 1.7E-06 51.7 4.2 28 173-200 3-30 (169)
283 1ly1_A Polynucleotide kinase; 93.6 0.04 1.4E-06 53.5 3.7 22 175-196 3-24 (181)
284 1g8p_A Magnesium-chelatase 38 93.6 0.037 1.3E-06 60.6 3.8 50 150-199 21-70 (350)
285 1j8m_F SRP54, signal recogniti 93.6 0.33 1.1E-05 51.1 11.0 89 174-264 98-190 (297)
286 4eun_A Thermoresistant glucoki 93.6 0.044 1.5E-06 54.4 4.0 27 172-198 27-53 (200)
287 1odf_A YGR205W, hypothetical 3 93.6 0.085 2.9E-06 55.5 6.3 29 172-200 29-57 (290)
288 1nks_A Adenylate kinase; therm 93.5 0.044 1.5E-06 53.9 3.9 25 175-199 2-26 (194)
289 2rhm_A Putative kinase; P-loop 93.5 0.048 1.6E-06 53.7 4.2 26 174-199 5-30 (193)
290 2yvu_A Probable adenylyl-sulfa 93.5 0.053 1.8E-06 53.0 4.4 28 173-200 12-39 (186)
291 2r44_A Uncharacterized protein 93.5 0.042 1.4E-06 59.6 4.0 44 154-199 28-71 (331)
292 1vma_A Cell division protein F 93.5 0.2 6.9E-06 53.0 9.0 88 173-264 103-196 (306)
293 3iij_A Coilin-interacting nucl 93.4 0.04 1.4E-06 53.5 3.4 26 174-199 11-36 (180)
294 3t61_A Gluconokinase; PSI-biol 93.4 0.037 1.3E-06 55.0 3.2 26 174-199 18-43 (202)
295 1pzn_A RAD51, DNA repair and r 93.4 0.17 5.9E-06 54.8 8.7 57 173-230 130-190 (349)
296 1ls1_A Signal recognition part 93.4 0.22 7.5E-06 52.6 9.3 89 173-263 97-189 (295)
297 3l0o_A Transcription terminati 93.4 0.035 1.2E-06 59.4 3.0 51 164-215 164-216 (427)
298 3e70_C DPA, signal recognition 93.4 0.63 2.1E-05 49.7 12.8 58 172-231 127-185 (328)
299 3tqc_A Pantothenate kinase; bi 93.3 0.23 7.8E-06 52.8 9.2 27 173-199 91-117 (321)
300 1kht_A Adenylate kinase; phosp 93.3 0.049 1.7E-06 53.5 3.9 25 175-199 4-28 (192)
301 2ze6_A Isopentenyl transferase 93.3 0.051 1.7E-06 56.1 4.0 25 175-199 2-26 (253)
302 1via_A Shikimate kinase; struc 93.2 0.044 1.5E-06 53.0 3.2 25 175-199 5-29 (175)
303 1knq_A Gluconate kinase; ALFA/ 93.2 0.056 1.9E-06 52.2 4.0 25 174-198 8-32 (175)
304 3tau_A Guanylate kinase, GMP k 93.2 0.053 1.8E-06 54.1 3.8 27 173-199 7-33 (208)
305 1y63_A LMAJ004144AAA protein; 93.1 0.057 1.9E-06 52.7 3.9 25 173-197 9-33 (184)
306 2qor_A Guanylate kinase; phosp 93.1 0.046 1.6E-06 54.4 3.3 27 173-199 11-37 (204)
307 1zuh_A Shikimate kinase; alpha 93.1 0.057 1.9E-06 51.8 3.8 27 173-199 6-32 (168)
308 1gvn_B Zeta; postsegregational 93.1 0.085 2.9E-06 55.5 5.4 26 173-198 32-57 (287)
309 3hws_A ATP-dependent CLP prote 93.0 0.085 2.9E-06 57.9 5.6 45 155-199 17-76 (363)
310 2wsm_A Hydrogenase expression/ 93.0 0.062 2.1E-06 54.2 4.2 40 160-199 16-55 (221)
311 4akg_A Glutathione S-transfera 93.0 0.67 2.3E-05 63.2 14.9 79 175-264 1268-1346(2695)
312 2j37_W Signal recognition part 93.0 0.77 2.6E-05 52.0 13.3 38 173-212 100-137 (504)
313 3umf_A Adenylate kinase; rossm 92.9 0.069 2.4E-06 53.3 4.2 28 172-199 27-54 (217)
314 2c95_A Adenylate kinase 1; tra 92.9 0.06 2.1E-06 53.1 3.8 27 173-199 8-34 (196)
315 3tr0_A Guanylate kinase, GMP k 92.9 0.061 2.1E-06 53.5 3.8 25 174-198 7-31 (205)
316 2jaq_A Deoxyguanosine kinase; 92.9 0.06 2.1E-06 53.5 3.8 24 176-199 2-25 (205)
317 2iyv_A Shikimate kinase, SK; t 92.9 0.049 1.7E-06 53.1 3.0 25 175-199 3-27 (184)
318 3rfe_A Platelet glycoprotein I 92.9 0.1 3.5E-06 47.3 4.9 54 577-633 12-67 (130)
319 2bdt_A BH3686; alpha-beta prot 92.8 0.061 2.1E-06 52.7 3.7 22 175-196 3-24 (189)
320 1tev_A UMP-CMP kinase; ploop, 92.8 0.066 2.2E-06 52.7 4.0 26 174-199 3-28 (196)
321 1ex7_A Guanylate kinase; subst 92.8 0.053 1.8E-06 52.6 3.1 25 175-199 2-26 (186)
322 3cm0_A Adenylate kinase; ATP-b 92.8 0.074 2.5E-06 51.9 4.3 26 174-199 4-29 (186)
323 3ney_A 55 kDa erythrocyte memb 92.8 0.068 2.3E-06 52.3 3.8 27 173-199 18-44 (197)
324 3tlx_A Adenylate kinase 2; str 92.8 0.12 4.3E-06 52.8 6.1 28 172-199 27-54 (243)
325 1ukz_A Uridylate kinase; trans 92.8 0.072 2.5E-06 52.9 4.1 26 173-198 14-39 (203)
326 3nbx_X ATPase RAVA; AAA+ ATPas 92.8 0.055 1.9E-06 61.5 3.6 44 154-199 23-66 (500)
327 1um8_A ATP-dependent CLP prote 92.7 0.1 3.5E-06 57.7 5.7 26 174-199 72-97 (376)
328 1uf9_A TT1252 protein; P-loop, 92.7 0.07 2.4E-06 53.0 3.9 26 172-197 6-31 (203)
329 4a1f_A DNAB helicase, replicat 92.7 0.47 1.6E-05 50.7 10.5 62 161-228 35-96 (338)
330 2j41_A Guanylate kinase; GMP, 92.7 0.069 2.4E-06 53.2 3.9 25 174-198 6-30 (207)
331 2b8t_A Thymidine kinase; deoxy 92.7 0.051 1.7E-06 54.5 2.8 110 173-292 11-126 (223)
332 3asz_A Uridine kinase; cytidin 92.7 0.076 2.6E-06 53.1 4.2 27 173-199 5-31 (211)
333 3a00_A Guanylate kinase, GMP k 92.7 0.054 1.8E-06 53.0 3.0 25 175-199 2-26 (186)
334 1e6c_A Shikimate kinase; phosp 92.6 0.06 2.1E-06 51.8 3.2 25 175-199 3-27 (173)
335 3cf2_A TER ATPase, transitiona 92.6 0.18 6E-06 60.6 7.8 151 151-322 475-662 (806)
336 2plr_A DTMP kinase, probable t 92.6 0.078 2.7E-06 53.0 4.2 27 174-200 4-30 (213)
337 1uj2_A Uridine-cytidine kinase 92.6 0.074 2.5E-06 54.9 4.0 28 172-199 20-47 (252)
338 1cke_A CK, MSSA, protein (cyti 92.6 0.07 2.4E-06 54.1 3.8 25 175-199 6-30 (227)
339 1ye8_A Protein THEP1, hypothet 92.5 0.08 2.8E-06 51.1 3.9 24 176-199 2-25 (178)
340 2bwj_A Adenylate kinase 5; pho 92.5 0.072 2.5E-06 52.7 3.7 25 175-199 13-37 (199)
341 2bbw_A Adenylate kinase 4, AK4 92.5 0.076 2.6E-06 54.6 4.0 27 173-199 26-52 (246)
342 3a4m_A L-seryl-tRNA(SEC) kinas 92.5 0.077 2.6E-06 55.1 4.0 26 174-199 4-29 (260)
343 2cdn_A Adenylate kinase; phosp 92.4 0.086 2.9E-06 52.2 4.2 27 173-199 19-45 (201)
344 3end_A Light-independent proto 92.4 0.16 5.3E-06 54.3 6.5 44 171-216 38-81 (307)
345 2ffh_A Protein (FFH); SRP54, s 92.4 0.57 2E-05 51.8 11.1 38 173-212 97-134 (425)
346 1g5t_A COB(I)alamin adenosyltr 92.4 0.16 5.5E-06 49.2 5.8 117 175-293 29-164 (196)
347 2if2_A Dephospho-COA kinase; a 92.4 0.07 2.4E-06 53.0 3.4 22 175-196 2-23 (204)
348 3cmu_A Protein RECA, recombina 92.3 0.21 7.3E-06 65.4 8.6 85 173-264 1426-1515(2050)
349 3aez_A Pantothenate kinase; tr 92.3 0.15 5.1E-06 54.2 6.1 42 172-213 88-129 (312)
350 2pt5_A Shikimate kinase, SK; a 92.3 0.084 2.9E-06 50.5 3.8 24 176-199 2-25 (168)
351 2vli_A Antibiotic resistance p 92.3 0.053 1.8E-06 52.8 2.4 26 174-199 5-30 (183)
352 2f1r_A Molybdopterin-guanine d 92.3 0.076 2.6E-06 50.8 3.4 36 175-210 3-38 (171)
353 1lvg_A Guanylate kinase, GMP k 92.2 0.065 2.2E-06 53.0 2.9 26 174-199 4-29 (198)
354 1qf9_A UMP/CMP kinase, protein 92.2 0.087 3E-06 51.7 3.9 26 174-199 6-31 (194)
355 1rj9_A FTSY, signal recognitio 92.2 0.1 3.5E-06 55.2 4.6 28 173-200 101-128 (304)
356 2qt1_A Nicotinamide riboside k 92.1 0.085 2.9E-06 52.6 3.8 26 173-198 20-45 (207)
357 3rfe_A Platelet glycoprotein I 92.1 0.22 7.4E-06 45.2 6.1 31 575-605 33-64 (130)
358 2grj_A Dephospho-COA kinase; T 92.1 0.089 3.1E-06 51.5 3.7 27 172-198 10-36 (192)
359 1aky_A Adenylate kinase; ATP:A 92.1 0.093 3.2E-06 52.9 4.0 26 174-199 4-29 (220)
360 2wwf_A Thymidilate kinase, put 92.1 0.092 3.2E-06 52.5 3.9 32 174-206 10-41 (212)
361 1nn5_A Similar to deoxythymidy 92.0 0.099 3.4E-06 52.4 4.1 32 174-206 9-40 (215)
362 4e22_A Cytidylate kinase; P-lo 92.0 0.094 3.2E-06 54.1 3.9 27 173-199 26-52 (252)
363 2p5t_B PEZT; postsegregational 92.0 0.12 4.1E-06 53.3 4.8 27 173-199 31-57 (253)
364 4gp7_A Metallophosphoesterase; 92.0 0.077 2.6E-06 51.0 3.1 22 173-194 8-29 (171)
365 2pbr_A DTMP kinase, thymidylat 91.9 0.096 3.3E-06 51.5 3.8 24 176-199 2-25 (195)
366 4h09_A Hypothetical leucine ri 91.8 0.35 1.2E-05 53.3 8.7 102 523-628 235-340 (379)
367 1tue_A Replication protein E1; 91.8 0.14 4.8E-06 49.8 4.6 38 162-199 45-83 (212)
368 1znw_A Guanylate kinase, GMP k 91.8 0.093 3.2E-06 52.3 3.5 27 173-199 19-45 (207)
369 1jjv_A Dephospho-COA kinase; P 91.8 0.093 3.2E-06 52.2 3.5 22 175-196 3-24 (206)
370 1zd8_A GTP:AMP phosphotransfer 91.7 0.092 3.1E-06 53.2 3.5 26 174-199 7-32 (227)
371 1zak_A Adenylate kinase; ATP:A 91.7 0.092 3.1E-06 53.0 3.4 26 174-199 5-30 (222)
372 1z6g_A Guanylate kinase; struc 91.6 0.087 3E-06 53.0 3.1 26 173-198 22-47 (218)
373 1htw_A HI0065; nucleotide-bind 91.6 0.12 4.2E-06 48.7 3.9 27 172-198 31-57 (158)
374 2jeo_A Uridine-cytidine kinase 91.6 0.11 3.8E-06 53.3 4.0 26 173-198 24-49 (245)
375 3fb4_A Adenylate kinase; psych 91.6 0.11 3.7E-06 52.2 3.8 24 176-199 2-25 (216)
376 1gtv_A TMK, thymidylate kinase 91.5 0.067 2.3E-06 53.6 2.2 24 176-199 2-25 (214)
377 1m7g_A Adenylylsulfate kinase; 91.5 0.13 4.5E-06 51.4 4.3 28 172-199 23-50 (211)
378 1s96_A Guanylate kinase, GMP k 91.5 0.11 3.8E-06 52.1 3.7 27 173-199 15-41 (219)
379 1np6_A Molybdopterin-guanine d 91.4 0.2 6.9E-06 48.0 5.3 26 174-199 6-31 (174)
380 3p32_A Probable GTPase RV1496/ 91.4 0.25 8.5E-06 53.8 6.7 39 162-200 65-105 (355)
381 2z0h_A DTMP kinase, thymidylat 91.3 0.12 4.1E-06 50.9 3.8 25 176-200 2-26 (197)
382 1pgv_A TMD-1, tropomodulin TMD 91.3 0.1 3.5E-06 50.8 3.1 81 525-605 38-135 (197)
383 2pez_A Bifunctional 3'-phospho 91.3 0.14 4.8E-06 49.6 4.1 27 174-200 5-31 (179)
384 3dl0_A Adenylate kinase; phosp 91.2 0.12 4E-06 51.9 3.6 23 176-198 2-24 (216)
385 3nwj_A ATSK2; P loop, shikimat 91.2 0.11 3.6E-06 53.3 3.3 26 174-199 48-73 (250)
386 3d3q_A TRNA delta(2)-isopenten 91.2 0.13 4.3E-06 54.9 3.9 25 175-199 8-32 (340)
387 3vr4_D V-type sodium ATPase su 91.1 0.35 1.2E-05 53.2 7.4 99 165-265 141-259 (465)
388 3b9q_A Chloroplast SRP recepto 91.1 0.15 5.1E-06 53.9 4.4 28 173-200 99-126 (302)
389 2i3b_A HCR-ntpase, human cance 91.1 0.12 4E-06 50.5 3.3 25 175-199 2-26 (189)
390 2e87_A Hypothetical protein PH 91.1 2.5 8.6E-05 45.8 14.4 25 173-197 166-190 (357)
391 2v54_A DTMP kinase, thymidylat 91.0 0.13 4.5E-06 51.0 3.7 25 174-198 4-28 (204)
392 1g41_A Heat shock protein HSLU 90.9 0.13 4.5E-06 57.1 3.9 46 154-199 16-75 (444)
393 3r20_A Cytidylate kinase; stru 90.9 0.14 4.9E-06 51.5 3.8 26 174-199 9-34 (233)
394 1yrb_A ATP(GTP)binding protein 90.7 0.17 5.9E-06 52.5 4.5 27 173-199 13-39 (262)
395 3sr0_A Adenylate kinase; phosp 90.7 0.16 5.3E-06 50.4 3.8 24 176-199 2-25 (206)
396 3crm_A TRNA delta(2)-isopenten 90.6 0.15 5E-06 54.0 3.7 25 175-199 6-30 (323)
397 3ake_A Cytidylate kinase; CMP 90.6 0.16 5.3E-06 50.6 3.8 24 176-199 4-27 (208)
398 1vht_A Dephospho-COA kinase; s 90.5 0.17 5.7E-06 50.9 4.0 23 174-196 4-26 (218)
399 2f6r_A COA synthase, bifunctio 90.5 0.15 5.1E-06 53.5 3.7 24 173-196 74-97 (281)
400 3exa_A TRNA delta(2)-isopenten 90.4 0.15 5.1E-06 53.4 3.5 25 174-198 3-27 (322)
401 1zu4_A FTSY; GTPase, signal re 90.4 0.2 6.8E-06 53.5 4.6 38 173-212 104-141 (320)
402 3be4_A Adenylate kinase; malar 90.4 0.16 5.4E-06 51.0 3.7 25 175-199 6-30 (217)
403 3cmu_A Protein RECA, recombina 90.4 0.6 2.1E-05 61.3 9.7 85 174-265 383-472 (2050)
404 2xb4_A Adenylate kinase; ATP-b 90.3 0.17 5.7E-06 51.1 3.8 24 176-199 2-25 (223)
405 1ak2_A Adenylate kinase isoenz 90.3 0.19 6.4E-06 51.1 4.2 26 174-199 16-41 (233)
406 2yhs_A FTSY, cell division pro 90.3 0.32 1.1E-05 54.5 6.2 42 173-217 292-333 (503)
407 3iqw_A Tail-anchored protein t 90.3 0.34 1.2E-05 52.0 6.3 49 170-220 12-60 (334)
408 1e4v_A Adenylate kinase; trans 90.3 0.17 5.8E-06 50.7 3.7 23 176-198 2-24 (214)
409 2zts_A Putative uncharacterize 90.2 0.68 2.3E-05 47.3 8.6 49 174-225 30-78 (251)
410 2c61_A A-type ATP synthase non 90.2 0.2 7E-06 55.5 4.6 100 165-264 142-259 (469)
411 3cmw_A Protein RECA, recombina 90.2 0.61 2.1E-05 60.4 9.5 85 174-265 732-821 (1706)
412 1q57_A DNA primase/helicase; d 90.2 1 3.5E-05 51.7 10.8 52 174-228 242-293 (503)
413 2onk_A Molybdate/tungstate ABC 90.2 0.16 5.6E-06 51.6 3.5 24 175-198 25-48 (240)
414 3k1j_A LON protease, ATP-depen 90.2 0.17 5.8E-06 59.7 4.2 48 150-199 38-85 (604)
415 1sq5_A Pantothenate kinase; P- 90.2 0.3 1E-05 51.9 5.8 28 172-199 78-105 (308)
416 3a8t_A Adenylate isopentenyltr 90.1 0.13 4.5E-06 54.6 2.9 26 173-198 39-64 (339)
417 2og2_A Putative signal recogni 90.1 0.2 7E-06 54.1 4.4 28 173-200 156-183 (359)
418 3io3_A DEHA2D07832P; chaperone 90.0 0.39 1.3E-05 51.8 6.5 49 169-219 13-63 (348)
419 3gqb_B V-type ATP synthase bet 90.0 0.49 1.7E-05 52.1 7.3 100 165-264 137-261 (464)
420 3foz_A TRNA delta(2)-isopenten 90.0 0.21 7.2E-06 52.2 4.2 27 173-199 9-35 (316)
421 3vkg_A Dynein heavy chain, cyt 90.0 1.2 4E-05 61.4 12.3 89 164-264 1295-1384(3245)
422 1cp2_A CP2, nitrogenase iron p 89.9 0.39 1.3E-05 50.0 6.4 39 175-215 2-40 (269)
423 3mfy_A V-type ATP synthase alp 89.9 0.58 2E-05 52.6 7.8 58 164-225 216-275 (588)
424 3lnc_A Guanylate kinase, GMP k 89.9 0.12 4.1E-06 52.5 2.3 25 174-198 27-52 (231)
425 2ehv_A Hypothetical protein PH 89.8 0.16 5.6E-06 52.2 3.4 24 174-197 30-53 (251)
426 2q6t_A DNAB replication FORK h 89.7 1.5 5.2E-05 49.2 11.5 52 174-228 200-251 (444)
427 1a7j_A Phosphoribulokinase; tr 89.7 0.12 4.1E-06 54.4 2.1 27 173-199 4-30 (290)
428 2r8r_A Sensor protein; KDPD, P 89.6 0.26 9E-06 48.9 4.4 38 176-215 8-45 (228)
429 3tif_A Uncharacterized ABC tra 89.6 0.16 5.5E-06 51.6 3.0 25 174-198 31-55 (235)
430 3lv8_A DTMP kinase, thymidylat 89.6 0.56 1.9E-05 47.3 7.0 36 174-210 27-62 (236)
431 2pcj_A ABC transporter, lipopr 89.5 0.15 5.2E-06 51.3 2.7 24 174-197 30-53 (224)
432 4eaq_A DTMP kinase, thymidylat 89.4 0.39 1.3E-05 48.5 5.6 28 173-200 25-52 (229)
433 3b85_A Phosphate starvation-in 89.4 0.15 5.2E-06 50.5 2.5 24 174-197 22-45 (208)
434 3cwq_A Para family chromosome 89.3 0.51 1.7E-05 46.9 6.4 44 176-222 2-46 (209)
435 2ck3_A ATP synthase subunit al 89.3 0.73 2.5E-05 51.5 8.0 102 164-265 151-273 (510)
436 2r6a_A DNAB helicase, replicat 89.3 1.1 3.7E-05 50.6 9.8 50 174-226 203-252 (454)
437 3cmw_A Protein RECA, recombina 89.2 0.66 2.3E-05 60.1 8.7 84 174-264 1431-1519(1706)
438 3vr4_A V-type sodium ATPase ca 89.1 0.82 2.8E-05 51.6 8.3 58 164-225 221-280 (600)
439 1g8f_A Sulfate adenylyltransfe 89.1 0.34 1.2E-05 54.9 5.4 46 155-200 374-421 (511)
440 3ld9_A DTMP kinase, thymidylat 89.1 0.49 1.7E-05 47.2 6.0 29 172-200 19-47 (223)
441 2cbz_A Multidrug resistance-as 89.1 0.19 6.4E-06 51.1 3.0 25 174-198 31-55 (237)
442 4tmk_A Protein (thymidylate ki 89.0 0.66 2.2E-05 46.1 6.9 52 175-227 4-55 (213)
443 2afh_E Nitrogenase iron protei 89.0 0.28 9.6E-06 51.7 4.4 40 174-215 2-41 (289)
444 1nlf_A Regulatory protein REPA 88.9 0.39 1.3E-05 50.3 5.5 26 174-199 30-55 (279)
445 3kjh_A CO dehydrogenase/acetyl 88.9 0.44 1.5E-05 48.9 5.8 41 177-219 3-43 (254)
446 1b0u_A Histidine permease; ABC 88.9 0.19 6.6E-06 51.9 3.0 26 173-198 31-56 (262)
447 4edh_A DTMP kinase, thymidylat 88.8 0.76 2.6E-05 45.7 7.2 32 174-206 6-37 (213)
448 1oix_A RAS-related protein RAB 88.8 0.23 8E-06 48.5 3.4 25 174-198 29-53 (191)
449 2d2e_A SUFC protein; ABC-ATPas 88.8 0.22 7.6E-06 51.1 3.4 24 174-197 29-52 (250)
450 1q3t_A Cytidylate kinase; nucl 88.8 0.28 9.6E-06 49.9 4.1 27 173-199 15-41 (236)
451 3gfo_A Cobalt import ATP-bindi 88.7 0.19 6.6E-06 52.2 2.8 25 174-198 34-58 (275)
452 4h09_A Hypothetical leucine ri 88.6 1.2 4.2E-05 48.9 9.6 105 522-630 211-319 (379)
453 1ltq_A Polynucleotide kinase; 88.6 0.26 8.8E-06 52.4 3.9 23 175-197 3-25 (301)
454 3qfl_A MLA10; coiled-coil, (CC 88.6 0.14 4.6E-06 45.2 1.3 79 10-88 4-83 (115)
455 2zu0_C Probable ATP-dependent 88.6 0.24 8.3E-06 51.4 3.5 25 173-197 45-69 (267)
456 2olj_A Amino acid ABC transpor 88.6 0.21 7.2E-06 51.6 3.0 26 173-198 49-74 (263)
457 2v9p_A Replication protein E1; 88.5 0.26 9E-06 51.8 3.8 27 172-198 124-150 (305)
458 4g1u_C Hemin import ATP-bindin 88.5 0.2 6.9E-06 51.8 2.8 25 174-198 37-61 (266)
459 1ji0_A ABC transporter; ATP bi 88.5 0.21 7.1E-06 51.0 2.9 25 174-198 32-56 (240)
460 1sgw_A Putative ABC transporte 88.5 0.18 6E-06 50.3 2.3 25 174-198 35-59 (214)
461 3eph_A TRNA isopentenyltransfe 88.4 0.28 9.5E-06 53.4 3.9 25 175-199 3-27 (409)
462 2pze_A Cystic fibrosis transme 88.4 0.21 7.3E-06 50.4 2.8 25 174-198 34-58 (229)
463 1g6h_A High-affinity branched- 88.4 0.21 7.2E-06 51.5 2.9 25 174-198 33-57 (257)
464 1mv5_A LMRA, multidrug resista 88.3 0.23 8E-06 50.7 3.1 26 173-198 27-52 (243)
465 2ff7_A Alpha-hemolysin translo 88.3 0.22 7.5E-06 51.0 2.9 25 174-198 35-59 (247)
466 3upu_A ATP-dependent DNA helic 88.2 0.75 2.6E-05 52.1 7.6 45 157-202 29-73 (459)
467 2dyk_A GTP-binding protein; GT 88.2 0.31 1E-05 45.8 3.7 23 175-197 2-24 (161)
468 1vpl_A ABC transporter, ATP-bi 88.1 0.23 7.9E-06 51.0 3.0 26 173-198 40-65 (256)
469 2qe7_A ATP synthase subunit al 88.1 0.78 2.7E-05 51.2 7.3 98 164-265 151-265 (502)
470 2eyu_A Twitching motility prot 88.0 0.33 1.1E-05 50.1 4.0 110 173-295 24-136 (261)
471 2ghi_A Transport protein; mult 88.0 0.24 8.3E-06 51.1 3.0 25 174-198 46-70 (260)
472 2wji_A Ferrous iron transport 88.0 0.33 1.1E-05 46.0 3.8 23 175-197 4-26 (165)
473 1cr0_A DNA primase/helicase; R 88.0 0.47 1.6E-05 50.2 5.4 40 173-213 34-73 (296)
474 2qmh_A HPR kinase/phosphorylas 87.9 0.23 7.8E-06 48.1 2.5 24 175-198 35-58 (205)
475 2ixe_A Antigen peptide transpo 87.9 0.25 8.4E-06 51.4 3.0 26 173-198 44-69 (271)
476 2qi9_C Vitamin B12 import ATP- 87.8 0.24 8.2E-06 50.7 2.8 25 174-198 26-50 (249)
477 3bgw_A DNAB-like replicative h 87.8 1.5 5.2E-05 49.1 9.6 50 174-227 197-246 (444)
478 4dzz_A Plasmid partitioning pr 87.8 0.48 1.7E-05 46.8 5.1 44 175-220 2-46 (206)
479 2f9l_A RAB11B, member RAS onco 87.8 0.3 1E-05 48.0 3.6 24 174-197 5-28 (199)
480 2ocp_A DGK, deoxyguanosine kin 87.8 0.33 1.1E-05 49.5 3.9 26 174-199 2-27 (241)
481 3zvl_A Bifunctional polynucleo 87.7 0.23 7.8E-06 55.4 2.8 27 172-198 256-282 (416)
482 2yz2_A Putative ABC transporte 87.6 0.26 8.9E-06 51.1 3.0 25 174-198 33-57 (266)
483 2nq2_C Hypothetical ABC transp 87.5 0.26 8.8E-06 50.7 2.8 25 174-198 31-55 (253)
484 1svm_A Large T antigen; AAA+ f 87.4 0.33 1.1E-05 52.9 3.8 27 172-198 167-193 (377)
485 2ihy_A ABC transporter, ATP-bi 87.4 0.26 8.8E-06 51.4 2.8 25 174-198 47-71 (279)
486 2ged_A SR-beta, signal recogni 87.4 0.6 2E-05 45.5 5.4 25 173-197 47-71 (193)
487 2v3c_C SRP54, signal recogniti 87.4 0.21 7.3E-06 55.6 2.3 37 174-212 99-135 (432)
488 3oaa_A ATP synthase subunit al 87.3 2.4 8.4E-05 47.1 10.5 97 165-265 152-265 (513)
489 2zej_A Dardarin, leucine-rich 87.2 0.29 1E-05 47.4 2.9 21 176-196 4-24 (184)
490 3cr8_A Sulfate adenylyltranfer 86.9 0.52 1.8E-05 54.2 5.2 28 173-200 368-395 (552)
491 1nij_A Hypothetical protein YJ 86.8 0.35 1.2E-05 51.7 3.5 26 173-198 3-28 (318)
492 2ce2_X GTPase HRAS; signaling 86.7 0.35 1.2E-05 45.5 3.2 22 176-197 5-26 (166)
493 3sop_A Neuronal-specific septi 86.7 0.36 1.2E-05 50.1 3.4 24 176-199 4-27 (270)
494 1u0j_A DNA replication protein 86.6 0.69 2.3E-05 47.3 5.3 37 162-198 90-128 (267)
495 2orw_A Thymidine kinase; TMTK, 86.6 0.49 1.7E-05 45.8 4.2 107 175-292 4-113 (184)
496 3ez2_A Plasmid partition prote 86.5 2.4 8.3E-05 46.8 10.4 45 173-217 107-156 (398)
497 2vp4_A Deoxynucleoside kinase; 86.5 0.28 9.5E-06 49.7 2.4 25 173-197 19-43 (230)
498 1z2a_A RAS-related protein RAB 86.5 0.38 1.3E-05 45.5 3.3 24 174-197 5-28 (168)
499 3fkq_A NTRC-like two-domain pr 86.4 0.61 2.1E-05 51.2 5.3 44 172-217 141-185 (373)
500 2wjg_A FEOB, ferrous iron tran 86.4 0.45 1.5E-05 46.1 3.8 24 174-197 7-30 (188)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=8.8e-45 Score=429.40 Aligned_cols=310 Identities=14% Similarity=0.137 Sum_probs=239.9
Q ss_pred cchHHHHHHHHHHhcC---CCeeEEEEEcCCCCcHHHHHHHHHH--HhhhcCCCCeEEEEEEcCCc--CHHHHHHHHHHH
Q 037851 156 ESRMSTLKSLQNALLD---PDVTITGVYGMGGLGKTTLVKEVAR--QVKKDKHFDEVVFAEVSDTP--DIKKVQGELADQ 228 (1053)
Q Consensus 156 ~gR~~~~~~l~~~l~~---~~~~vi~I~G~~GiGKTtLa~~v~~--~~~~~~~f~~~~wv~~s~~~--~~~~~~~~i~~~ 228 (1053)
+||++++++|.++|.. ++.++|+|+||||+||||||+++|+ +.+++.+|++++||++++.. +...++..|+++
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 4999999999999973 3679999999999999999999998 46677899999999999985 899999999999
Q ss_pred hCCCCC--C-----CCChhHHHHHHHHHHhcCC-cEEEEEcCCCCccchhhhcCCCCCCCCCcEEEEEecChHHHHhhC-
Q 037851 229 LGMQFD--E-----ESDVPGRARKLYARLQKEN-KILIILDNIWEDLDLEKVGVPSGNDCRGCKVLLTARDRHVLESIG- 299 (1053)
Q Consensus 229 l~~~~~--~-----~~~~~~~~~~l~~~l~~~~-~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~~~~- 299 (1053)
++.... . ..+.......+.+.+. ++ ||||||||||+..++ .+.. .+||+||||||++.++..++
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~-~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~~~ 283 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALI-DRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNAASQ 283 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHT-TSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGGCCS
T ss_pred HhcCcccccccccccccHHHHHHHHHHHHc-CCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHHHcCC
Confidence 986532 1 1122334677777775 65 999999999998764 2211 26999999999999998775
Q ss_pred -CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCchHHHHHHHHHhcCCCHHHHHHHHHHhcCCCCCc
Q 037851 300 -SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPIAIVTLAKALRNKTSVSTWKDALRQLKRPSHRN 378 (1053)
Q Consensus 300 -~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~L~~~~~~~~w~~~l~~l~~~~~~~ 378 (1053)
...|++++|+.+|||+||.++++....++++++++++|+++|+|+||||+++|+.|+.+ . .+|...+....+.
T Consensus 284 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~-w~~~~~l~~~l~~---- 357 (549)
T 2a5y_B 284 TCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T-FEKMAQLNNKLES---- 357 (549)
T ss_dssp CEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S-HHHHHHHHHHHHH----
T ss_pred CCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h-HHHHHHhHHHhhc----
Confidence 35799999999999999999998655457788999999999999999999999999776 3 2333333221110
Q ss_pred hhhhHHHhhhhHHhhhcccChhhhHHHHH-----------hcCCCCCCCchhHHHHHHHHHh--ccccCccCHHHHHHHH
Q 037851 379 FEGVLAKTYSAIELSYKYLREEELKKLFL-----------QCSLMGSPQASTLNLLKYAIGL--GIVKGVGTVEEARDKV 445 (1053)
Q Consensus 379 ~~~~~~~~~~~l~~sy~~L~~~~lk~cfl-----------~~s~fp~~~~~~~~li~~w~a~--g~~~~~~~~~~~~~~~ 445 (1053)
.....+.+++.+||++||+ ++|.||+ |||+|| +++... +++|+|+ ||+.........++.+
T Consensus 358 --~~~~~i~~~l~~Sy~~L~~-~lk~~f~~Ls~~er~l~~~ls~fp-~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~ 431 (549)
T 2a5y_B 358 --RGLVGVECITPYSYKSLAM-ALQRCVEVLSDEDRSALAFAVVMP-PGVDIP--VKLWSCVIPVDICSNEEEQLDDEVA 431 (549)
T ss_dssp --HCSSTTCCCSSSSSSSHHH-HHHHHHHTSCHHHHHHTTGGGSSC-TTCCEE--HHHHHHHSCC-------CCCTHHHH
T ss_pred --ccHHHHHHHHhcccccccH-HHHHHHhccchhhhhHhhheeeeC-CCCeee--eeeeeeeccceeccCCCCCCHHHHH
Confidence 0134688899999999997 6999999 999999 665444 8999999 9996532111122233
Q ss_pred HHHHHHHHhhcccccC---CCCeEEehHHHHHHHHHHhcccce
Q 037851 446 NTLVDQLRDACLLLDG---TNDCFSMHDVVRDVAISIASRDYH 485 (1053)
Q Consensus 446 ~~~~~~L~~~~l~~~~---~~~~~~mHdlv~~~a~~~~~~e~~ 485 (1053)
. ++++|+++||++.. ...+|+|||+||++|++++.+++.
T Consensus 432 ~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 432 D-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp H-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred H-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHHH
Confidence 3 89999999999875 345799999999999999877653
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=1.5e-36 Score=358.62 Aligned_cols=281 Identities=20% Similarity=0.240 Sum_probs=222.0
Q ss_pred ccchHHHHHHHHHHhcC-CCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCe-EEEEEEcCCcCHHHHHHHHHHHhCCC
Q 037851 155 FESRMSTLKSLQNALLD-PDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDE-VVFAEVSDTPDIKKVQGELADQLGMQ 232 (1053)
Q Consensus 155 ~~gR~~~~~~l~~~l~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~-~~wv~~s~~~~~~~~~~~i~~~l~~~ 232 (1053)
.+||+.++++|.++|.+ +..++|+|+||||+||||||+++|++.+++.+|+. ++|+++++.++...++..|++.++..
T Consensus 130 ~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i 209 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhc
Confidence 48999999999999874 45799999999999999999999998777788986 99999999999888888887754321
Q ss_pred ---CCCCC--------ChhHHHHHHHHHHh--cCCcEEEEEcCCCCccchhhhcCCCCCCCCCcEEEEEecChHHHHhhC
Q 037851 233 ---FDEES--------DVPGRARKLYARLQ--KENKILIILDNIWEDLDLEKVGVPSGNDCRGCKVLLTARDRHVLESIG 299 (1053)
Q Consensus 233 ---~~~~~--------~~~~~~~~l~~~l~--~~~~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~~~~ 299 (1053)
..... +.+.....+.+.+. .++|+||||||||+..+|+.+. +||+||||||++.++..+.
T Consensus 210 ~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~Va~~l~ 282 (1221)
T 1vt4_I 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQVTDFLS 282 (1221)
T ss_dssp CSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSHHHHHHH
T ss_pred CcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccChHHHHhcC
Confidence 11110 11122344444441 4799999999999998888762 5899999999999987544
Q ss_pred -CCccccc------CCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCchHHHHHHHHHhcCC-CHHHHHHHHHHh
Q 037851 300 -SKTLRID------VLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPIAIVTLAKALRNKT-SVSTWKDALRQL 371 (1053)
Q Consensus 300 -~~~~~l~------~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~L~~~~-~~~~w~~~l~~l 371 (1053)
...|+++ +|+.+|||+||.+..+.. .+++..+| |+|+||||+++|+.|+.+. +.++|+..
T Consensus 283 g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~-----~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~---- 350 (1221)
T 1vt4_I 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLDCR-----PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV---- 350 (1221)
T ss_dssp HHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC-----TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC----
T ss_pred CCeEEEecCccccCCcCHHHHHHHHHHHcCCC-----HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC----
Confidence 4467777 999999999999986432 22334444 9999999999999999874 67888753
Q ss_pred cCCCCCchhhhHHHhhhhHHhhhcccChhhh-HHHHHhcCCCCCC-CchhHHHHHHHHHhccccCccCHHHHHHHHHHHH
Q 037851 372 KRPSHRNFEGVLAKTYSAIELSYKYLREEEL-KKLFLQCSLMGSP-QASTLNLLKYAIGLGIVKGVGTVEEARDKVNTLV 449 (1053)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~l-k~cfl~~s~fp~~-~~~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~~ 449 (1053)
....+..+|++||+.||+ +. |+||+|||+||.. .|+.+.++.+|+++|. + .+.+++
T Consensus 351 ----------~~~~I~aaLelSYd~Lp~-eelK~cFL~LAIFPed~~I~~elLa~LW~aeGe-------e----dAe~~L 408 (1221)
T 1vt4_I 351 ----------NCDKLTTIIESSLNVLEP-AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK-------S----DVMVVV 408 (1221)
T ss_dssp ----------SCHHHHHHHHHHHHHSCT-THHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCS-------H----HHHHHH
T ss_pred ----------ChhHHHHHHHHHHHhCCH-HHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCH-------H----HHHHHH
Confidence 125789999999999998 57 9999999999932 3778889999998871 2 244689
Q ss_pred HHHHhhcccccC-CCCeEEehHHHHHHH
Q 037851 450 DQLRDACLLLDG-TNDCFSMHDVVRDVA 476 (1053)
Q Consensus 450 ~~L~~~~l~~~~-~~~~~~mHdlv~~~a 476 (1053)
++|+++||++.. ...+|+|||++++++
T Consensus 409 ~eLvdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 409 NKLHKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred HHHHhhCCEEEeCCCCEEEehHHHHHHh
Confidence 999999999875 457899999999965
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1e-35 Score=393.07 Aligned_cols=310 Identities=21% Similarity=0.359 Sum_probs=243.8
Q ss_pred CCCcccccchHHHHHHHHHHhc--CCCeeEEEEEcCCCCcHHHHHHHHHHHhhh-cC-CCCeEEEEEEcCCcC--HHHHH
Q 037851 149 GKGYEAFESRMSTLKSLQNALL--DPDVTITGVYGMGGLGKTTLVKEVARQVKK-DK-HFDEVVFAEVSDTPD--IKKVQ 222 (1053)
Q Consensus 149 ~~~~~~~~gR~~~~~~l~~~l~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~-~~-~f~~~~wv~~s~~~~--~~~~~ 222 (1053)
+.....|+||++++++|.++|. +++.++|+|+||||+||||||+++|++.+. .. .|+.++||++++..+ ....+
T Consensus 120 p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 199 (1249)
T 3sfz_A 120 PQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKL 199 (1249)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHH
T ss_pred CCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHH
Confidence 3455679999999999999995 457899999999999999999999987543 33 457889999998543 44556
Q ss_pred HHHHHHhCCCCCC----CCChhHHHHHHHHHHhcCC--cEEEEEcCCCCccchhhhcCCCCCCCCCcEEEEEecChHHHH
Q 037851 223 GELADQLGMQFDE----ESDVPGRARKLYARLQKEN--KILIILDNIWEDLDLEKVGVPSGNDCRGCKVLLTARDRHVLE 296 (1053)
Q Consensus 223 ~~i~~~l~~~~~~----~~~~~~~~~~l~~~l~~~~--~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~ 296 (1053)
..++..++..... ..........+...+. ++ |+||||||||+..+|..+ ++||+||||||++.++.
T Consensus 200 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~ 271 (1249)
T 3sfz_A 200 QNLCMRLDQEESFSQRLPLNIEEAKDRLRVLML-RKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTD 271 (1249)
T ss_dssp HHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTS-SSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTT
T ss_pred HHHHHHhhhhcccccCCCCCHHHHHHHHHHHHh-ccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHH
Confidence 7778877654321 1233344455555553 45 999999999999888765 46899999999999985
Q ss_pred h-hC-CCcccccC-CCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCchHHHHHHHHHhcCCCHHHHHHHHHHhcC
Q 037851 297 S-IG-SKTLRIDV-LNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPIAIVTLAKALRNKTSVSTWKDALRQLKR 373 (1053)
Q Consensus 297 ~-~~-~~~~~l~~-L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~L~~~~~~~~w~~~l~~l~~ 373 (1053)
. ++ ...+++.+ |+++||++||...++.. .++.++++++|+++|+|+||||+++|++|+.+. ..|+..++.+..
T Consensus 272 ~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~--~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~ 347 (1249)
T 3sfz_A 272 SVMGPKHVVPVESGLGREKGLEILSLFVNMK--KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQN 347 (1249)
T ss_dssp TCCSCBCCEECCSSCCHHHHHHHHHHHHTSC--STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHS
T ss_pred hhcCCceEEEecCCCCHHHHHHHHHHhhCCC--hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHhh
Confidence 4 33 67889996 99999999999998632 345567799999999999999999999999874 469999988866
Q ss_pred CCCCch----hhhHHHhhhhHHhhhcccChhhhHHHHHhcCCCCCC-CchhHHHHHHHHHhccccCccCHHHHHHHHHHH
Q 037851 374 PSHRNF----EGVLAKTYSAIELSYKYLREEELKKLFLQCSLMGSP-QASTLNLLKYAIGLGIVKGVGTVEEARDKVNTL 448 (1053)
Q Consensus 374 ~~~~~~----~~~~~~~~~~l~~sy~~L~~~~lk~cfl~~s~fp~~-~~~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~ 448 (1053)
.....+ ......+..++.+||+.||+ +.|+||+|||+||.. .|+.+.++.+|.+++ +.+.++
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~-~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~------------~~~~~~ 414 (1249)
T 3sfz_A 348 KQFKRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCVLWDLET------------EEVEDI 414 (1249)
T ss_dssp CCCCCSSCTTCTTHHHHHHHHHHHHHTSCT-TTHHHHHHGGGSCTTCCEEHHHHHHHHTCCH------------HHHHHH
T ss_pred hhhhhcccccccchHHHHHHHHHHHHhCCH-HHHHHHHHhCccCCCCeeCHHHHHHHhCCCH------------HHHHHH
Confidence 543321 12345799999999999998 589999999999943 388899999996542 234567
Q ss_pred HHHHHhhcccccCCCC---eEEehHHHHHHHHHHhccc
Q 037851 449 VDQLRDACLLLDGTND---CFSMHDVVRDVAISIASRD 483 (1053)
Q Consensus 449 ~~~L~~~~l~~~~~~~---~~~mHdlv~~~a~~~~~~e 483 (1053)
+++|+++||++....+ +|+|||+||++|+..+.++
T Consensus 415 l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 415 LQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 9999999999866333 5999999999999987765
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=1.1e-32 Score=331.93 Aligned_cols=306 Identities=21% Similarity=0.330 Sum_probs=231.1
Q ss_pred CcccccchHHHHHHHHHHhc--CCCeeEEEEEcCCCCcHHHHHHHHHHHhhh-cCCC-CeEEEEEEcCCcCHHHHHHH--
Q 037851 151 GYEAFESRMSTLKSLQNALL--DPDVTITGVYGMGGLGKTTLVKEVARQVKK-DKHF-DEVVFAEVSDTPDIKKVQGE-- 224 (1053)
Q Consensus 151 ~~~~~~gR~~~~~~l~~~l~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~-~~~f-~~~~wv~~s~~~~~~~~~~~-- 224 (1053)
....|+||+.++++|.++|. .++.++|+|+||||+||||||++++++.+. ..+| +.++|++++.. +...+...
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~ 200 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQ 200 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHHH
T ss_pred CCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHHH
Confidence 34579999999999999997 356789999999999999999999987654 5678 58999999876 33334333
Q ss_pred -HHHHhCCCC----CCCCChhHHHHHHHHHHhc-CCcEEEEEcCCCCccchhhhcCCCCCCCCCcEEEEEecChHHHHhh
Q 037851 225 -LADQLGMQF----DEESDVPGRARKLYARLQK-ENKILIILDNIWEDLDLEKVGVPSGNDCRGCKVLLTARDRHVLESI 298 (1053)
Q Consensus 225 -i~~~l~~~~----~~~~~~~~~~~~l~~~l~~-~~~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~~~ 298 (1053)
++..++... ....+.......+...+.+ .+++||||||+|+...+..+ .+|++||||||++.++..+
T Consensus 201 ~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~~~~~ 273 (591)
T 1z6t_A 201 NLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVTDSV 273 (591)
T ss_dssp HHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGGGTTC
T ss_pred HHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcHHHHhc
Confidence 344555311 1222333455566666653 37999999999997766543 3589999999999887655
Q ss_pred CCCcccc---cCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCchHHHHHHHHHhcCCCHHHHHHHHHHhcCCC
Q 037851 299 GSKTLRI---DVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPIAIVTLAKALRNKTSVSTWKDALRQLKRPS 375 (1053)
Q Consensus 299 ~~~~~~l---~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~L~~~~~~~~w~~~l~~l~~~~ 375 (1053)
+...+++ ++|+.+|+++||.+.++.. .....+.+.+|+++|+|+|+||..+|+.++.+. ..|..+++.+....
T Consensus 274 ~~~~~~v~~l~~L~~~ea~~L~~~~~~~~--~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~~l~~l~~~~ 349 (591)
T 1z6t_A 274 MGPKYVVPVESSLGKEKGLEILSLFVNMK--KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWEYYLKQLQNKQ 349 (591)
T ss_dssp CSCEEEEECCSSCCHHHHHHHHHHHHTSC--GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHHHHHHHHSCC
T ss_pred CCCceEeecCCCCCHHHHHHHHHHHhCCC--cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHHHHHHHHHHhH
Confidence 4444544 5899999999999998742 233356789999999999999999999998863 46998888886544
Q ss_pred CCch----hhhHHHhhhhHHhhhcccChhhhHHHHHhcCCCCC-CCchhHHHHHHHHHhccccCccCHHHHHHHHHHHHH
Q 037851 376 HRNF----EGVLAKTYSAIELSYKYLREEELKKLFLQCSLMGS-PQASTLNLLKYAIGLGIVKGVGTVEEARDKVNTLVD 450 (1053)
Q Consensus 376 ~~~~----~~~~~~~~~~l~~sy~~L~~~~lk~cfl~~s~fp~-~~~~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~~~ 450 (1053)
...+ ......+..++..||+.||+ +.|.||++||+||. ..++.+.+...|.+.+ + .+.++++
T Consensus 350 ~~~~~~~~~~~~~~l~~~l~~s~~~L~~-~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~--------~----~~~~~l~ 416 (591)
T 1z6t_A 350 FKRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCILWDMET--------E----EVEDILQ 416 (591)
T ss_dssp CCCSSCCCSSCCHHHHHHHHHHHHTSCT-TTHHHHHHGGGCCTTCCEEHHHHHHHHTCCH--------H----HHHHHHH
T ss_pred HHHhhhccccchHHHHHHHHHHHHhCCH-HHHHHHHHccccCCCCccCHHHHHHHhccCH--------H----HHHHHHH
Confidence 3211 12235788999999999998 58999999999993 2388888888895431 2 2456799
Q ss_pred HHHhhcccccC---CCCeEEehHHHHHHHHHHhc
Q 037851 451 QLRDACLLLDG---TNDCFSMHDVVRDVAISIAS 481 (1053)
Q Consensus 451 ~L~~~~l~~~~---~~~~~~mHdlv~~~a~~~~~ 481 (1053)
+|+++||++.. ....|+||+++|++++....
T Consensus 417 ~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 417 EFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp HHHHTTSSEEEEETTEEEEECCHHHHHHHHHHTG
T ss_pred HHHhCcCeEEecCCCccEEEEcHHHHHHHHhhhh
Confidence 99999999754 23479999999999998743
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.97 E-value=1.1e-29 Score=308.06 Aligned_cols=475 Identities=17% Similarity=0.153 Sum_probs=272.2
Q ss_pred CcceEEeeccCCCCCCCCCcccccCCCceeEEeecCccccCC-CcccccCccCcEEEcCCcccCC--ccccCCCCCCcEE
Q 037851 502 KCSRISLYDNNINSPLKIPDNIFIGTPKLKVLDFTRMRLLSL-PSSIHLLTDLRTLCLDGCELED--IRVIGELKDLEIL 578 (1053)
Q Consensus 502 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~l-p~~i~~l~~Lr~L~L~~~~~~~--~~~i~~l~~L~~L 578 (1053)
..+.+.+.++.... +++..|.++++|++|++++|.+..+ |..|.++++|++|++++|.+.. |..++++++|++|
T Consensus 33 ~l~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 109 (606)
T 3vq2_A 33 STKNIDLSFNPLKI---LKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENL 109 (606)
T ss_dssp TCCEEECTTSCCCE---ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEE
T ss_pred CcCEEECCCCCcCE---eChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEE
Confidence 47888888776654 6666688999999999999999876 5578999999999999999877 5789999999999
Q ss_pred EccCCCCcccc-hhhhccCCCCeeeccCcccccccC-cchhcCCccCceeecccccccccccCCcccccCCChhhhcCCC
Q 037851 579 SLQGSKIEQLP-REIGQLTQLKLLDLSNCSKLKVIA-PNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLS 656 (1053)
Q Consensus 579 ~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~ 656 (1053)
++++|.+..+| ..++++++|++|++++| .+..+. |..++++++|++|++++|.+... ....+..+.+++
T Consensus 110 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~--------~~~~~~~l~~L~ 180 (606)
T 3vq2_A 110 VAVETKLASLESFPIGQLITLKKLNVAHN-FIHSCKLPAYFSNLTNLVHVDLSYNYIQTI--------TVNDLQFLRENP 180 (606)
T ss_dssp ECTTSCCCCSSSSCCTTCTTCCEEECCSS-CCCCCCCCGGGGTCTTCCEEECCSSCCCEE--------CTTTTHHHHHCT
T ss_pred EccCCccccccccccCCCCCCCEEeCCCC-cccceechHhHhhcCCCCEEEccCCcceec--------Chhhhhhhhccc
Confidence 99999998776 67899999999999995 555422 55689999999999999876321 112233333333
Q ss_pred C-CCeEEEEeccCCCCCCcccc-ccCceEEEEEcccC-----CCCCccc-------------------------------
Q 037851 657 R-LTSLEINILDAGILPSGFFS-RKLKRYRIVVGFQW-----APFDKYK------------------------------- 698 (1053)
Q Consensus 657 ~-L~~L~i~~~~~~~~~~~~~~-~~L~~l~l~~~~~~-----~~~~~~~------------------------------- 698 (1053)
. +..|+++.+....++...+. .+|+.+.+..+... .......
T Consensus 181 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~ 260 (606)
T 3vq2_A 181 QVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCD 260 (606)
T ss_dssp TCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGG
T ss_pred cccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhh
Confidence 2 33555555544444333221 23444444322100 0000000
Q ss_pred -ccceeeeccCCc--cccccccccCccceeeccccCCcccccccccccccccccEEEeecCCCceeecCCcccccCcCCc
Q 037851 699 -TRRTLKLKLNSR--ICLEEWRGMKNVEYLRLDELPGLTNVLHDLDGEGFAELKHLNVKNNSNFLCIVDPLQVRCGAFPM 775 (1053)
Q Consensus 699 -~l~~l~l~~~~~--~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~p~ 775 (1053)
.++.+.+..... ...+.+..+++|+.|++.++... . ++.+ ..+++|+.|++.+|.. ..++ .. .+++
T Consensus 261 l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~-l~~l--~~~~~L~~L~l~~n~l-~~lp-----~~-~l~~ 329 (606)
T 3vq2_A 261 VTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-Y-LEDV--PKHFKWQSLSIIRCQL-KQFP-----TL-DLPF 329 (606)
T ss_dssp SEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCC-C-CCCC--CTTCCCSEEEEESCCC-SSCC-----CC-CCSS
T ss_pred ccHhheeccccccccccccccccCCCCCEEEecCccch-h-hhhc--cccccCCEEEcccccC-cccc-----cC-CCCc
Confidence 111122211100 11222235566666666654431 1 2222 4556666666666642 2221 11 4566
Q ss_pred cceeecccccccccccccccCccccCCccEEeEccCCCccccC-CchhhhccCCccEEEecccchhhhHhhcCccccccc
Q 037851 776 LESLVLQNLINLERICHGQLRAESFCNLKTIKVGSCHKLKNLF-SFSIAKFLPQLKTIEVTECKIVEEIFVSSNEEAIGE 854 (1053)
Q Consensus 776 L~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~-~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 854 (1053)
|+.|++.++..+... ....+++|+.|++++|. +.... ....+..+++|++|++++|.. ..++. ..
T Consensus 330 L~~L~l~~n~~~~~~-----~~~~l~~L~~L~ls~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~l-~~~~~-------~~ 395 (606)
T 3vq2_A 330 LKSLTLTMNKGSISF-----KKVALPSLSYLDLSRNA-LSFSGCCSYSDLGTNSLRHLDLSFNGA-IIMSA-------NF 395 (606)
T ss_dssp CCEEEEESCSSCEEC-----CCCCCTTCCEEECCSSC-EEEEEECCHHHHCCSCCCEEECCSCSE-EEECC-------CC
T ss_pred cceeeccCCcCccch-----hhccCCCCCEEECcCCc-cCCCcchhhhhccCCcccEeECCCCcc-ccchh-------hc
Confidence 666666655333322 22345666666665552 33321 012344556666666665532 11110 11
Q ss_pred ccccccceEecCCCccccccc-ccccccccccchhhhhHhhhccccCCCCccccccccccccceEeecccccce-eccCC
Q 037851 855 IALAQVRSLILRTLPLLASFS-AFVKTTSTVEAKHNEIILENESQLHTPSSLFNVKLVLPNLEVLEVRDLNVAK-IWHNQ 932 (1053)
Q Consensus 855 ~~~~~L~~L~l~~c~~L~si~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~ 932 (1053)
..+++|+.|++.+|.-....+ ........++.+.. ..+......+ ..+..+++|++|++++|.+.+ +...
T Consensus 396 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l---~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~~~- 467 (606)
T 3vq2_A 396 MGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDI---SYTNTKIDFD----GIFLGLTSLNTLKMAGNSFKDNTLSN- 467 (606)
T ss_dssp TTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEEC---TTSCCEECCT----TTTTTCTTCCEEECTTCEEGGGEECS-
T ss_pred cCCCCCCeeECCCCccCCccChhhhhccccCCEEEC---cCCCCCccch----hhhcCCCCCCEEECCCCcCCCcchHH-
Confidence 124555555555553322222 01101011111100 0000000000 012237899999999987765 2222
Q ss_pred ccccccccCCcccEEEEecCccccccccchhHhhhccCcEEEEecccccceeecccCccccCCcccccccCccccccccc
Q 037851 933 FSAAMSCNVQNLTRLVVLDCHKLRYVFSYSTAKRLGQLKHLVISRCPLLEEIVGKEGGVEADPSFVFPQLTILKLSSLPE 1012 (1053)
Q Consensus 933 ~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~l~~l~sL~~L~i~~c~~l~~i~~~~~~~~~~~~~~~p~L~~L~l~~c~~ 1012 (1053)
.+..+++|+.|++++| +++..++ ..+.++++|++|++++|. ++.+.. .....+++|++|++++|.
T Consensus 468 ----~~~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~-------~~~~~l~~L~~L~l~~N~- 532 (606)
T 3vq2_A 468 ----VFANTTNLTFLDLSKC-QLEQISW-GVFDTLHRLQLLNMSHNN-LLFLDS-------SHYNQLYSLSTLDCSFNR- 532 (606)
T ss_dssp ----CCTTCTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEECCSSC-CSCEEG-------GGTTTCTTCCEEECTTSC-
T ss_pred ----hhccCCCCCEEECCCC-cCCccCh-hhhcccccCCEEECCCCc-CCCcCH-------HHccCCCcCCEEECCCCc-
Confidence 2356889999999996 5666533 456889999999999996 444421 223457899999999874
Q ss_pred cccccCCCCccCCC-CcceEEEecCCC
Q 037851 1013 LRAFYPGIHTLECP-ILTKLEVSFCHK 1038 (1053)
Q Consensus 1013 L~~l~~~~~~~~~~-sL~~L~I~~Cp~ 1038 (1053)
++.+|..+. .+| +|++|++.++|-
T Consensus 533 l~~~p~~~~--~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 533 IETSKGILQ--HFPKSLAFFNLTNNSV 557 (606)
T ss_dssp CCCEESCGG--GSCTTCCEEECCSCCC
T ss_pred CcccCHhHh--hhcccCcEEEccCCCc
Confidence 888888733 345 699999988663
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.96 E-value=3.3e-28 Score=294.99 Aligned_cols=482 Identities=16% Similarity=0.143 Sum_probs=282.7
Q ss_pred CcceEEeeccCCCCCCCCCcccccCCCceeEEeecCccccCC-CcccccCccCcEEEcCCcccCC--ccccCCCCCCcEE
Q 037851 502 KCSRISLYDNNINSPLKIPDNIFIGTPKLKVLDFTRMRLLSL-PSSIHLLTDLRTLCLDGCELED--IRVIGELKDLEIL 578 (1053)
Q Consensus 502 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~l-p~~i~~l~~Lr~L~L~~~~~~~--~~~i~~l~~L~~L 578 (1053)
..+.+.+.++.+.. +++..|.++++|++|++++|.+..+ |..|.++++|++|++++|.+.. +..++++++|++|
T Consensus 34 ~l~~L~Ls~n~i~~---~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 110 (606)
T 3t6q_A 34 STECLEFSFNVLPT---IQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHL 110 (606)
T ss_dssp TCCEEECTTCCCSE---ECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEE
T ss_pred cCcEEEccCCccCc---CChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEe
Confidence 47888888777654 6666678999999999999998865 6789999999999999999877 5789999999999
Q ss_pred EccCCCCccc-chhhhccCCCCeeeccCcccccccCcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCC
Q 037851 579 SLQGSKIEQL-PREIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSR 657 (1053)
Q Consensus 579 ~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~ 657 (1053)
++++|.+..+ |..++++++|++|++++| .+..++...+..+++|++|++++|.+ .......++.+++
T Consensus 111 ~L~~n~i~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l-----------~~~~~~~~~~l~~ 178 (606)
T 3t6q_A 111 FFIQTGISSIDFIPLHNQKTLESLYLGSN-HISSIKLPKGFPTEKLKVLDFQNNAI-----------HYLSKEDMSSLQQ 178 (606)
T ss_dssp ECTTSCCSCGGGSCCTTCTTCCEEECCSS-CCCCCCCCTTCCCTTCCEEECCSSCC-----------CEECHHHHHTTTT
T ss_pred eccccCcccCCcchhccCCcccEEECCCC-cccccCcccccCCcccCEEEcccCcc-----------cccChhhhhhhcc
Confidence 9999999987 567899999999999994 66665433456699999999999877 2334566778888
Q ss_pred CC--eEEEEeccCCCCCCcccc-ccCceEEEEEcc-----------------------cCC-------CCCc--ccccce
Q 037851 658 LT--SLEINILDAGILPSGFFS-RKLKRYRIVVGF-----------------------QWA-------PFDK--YKTRRT 702 (1053)
Q Consensus 658 L~--~L~i~~~~~~~~~~~~~~-~~L~~l~l~~~~-----------------------~~~-------~~~~--~~~l~~ 702 (1053)
|+ .|+++++.....+...+. ..|+.+.+..+. ... .+.. ...++.
T Consensus 179 L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~ 258 (606)
T 3t6q_A 179 ATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVES 258 (606)
T ss_dssp CCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEE
T ss_pred cceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeE
Confidence 88 566666654444333221 333333321110 000 0000 114555
Q ss_pred eeeccCCcccccc--ccccCccceeeccccCCcccccccccccccccccEEEeecCCCceeecCCcccccCcCCccceee
Q 037851 703 LKLKLNSRICLEE--WRGMKNVEYLRLDELPGLTNVLHDLDGEGFAELKHLNVKNNSNFLCIVDPLQVRCGAFPMLESLV 780 (1053)
Q Consensus 703 l~l~~~~~~~~~~--~~~l~~L~~L~L~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~p~L~~L~ 780 (1053)
+.+..+....++. +..+++|++|+++++.. ......+ ..+++|++|++++|. +..+ .......+++|+.|+
T Consensus 259 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~lp~~l--~~l~~L~~L~l~~n~-l~~~---~~~~~~~l~~L~~L~ 331 (606)
T 3t6q_A 259 INLQKHYFFNISSNTFHCFSGLQELDLTATHL-SELPSGL--VGLSTLKKLVLSANK-FENL---CQISASNFPSLTHLS 331 (606)
T ss_dssp EECTTCCCSSCCTTTTTTCTTCSEEECTTSCC-SCCCSSC--CSCTTCCEEECTTCC-CSBG---GGGCGGGCTTCSEEE
T ss_pred EEeecCccCccCHHHhccccCCCEEeccCCcc-CCCChhh--cccccCCEEECccCC-cCcC---chhhhhccCcCCEEE
Confidence 6666554444433 22677888888877643 2222222 567788888887775 2211 112245677788888
Q ss_pred cccccccccccccccCccccCCccEEeEccCCCccccCC-chhhhccCCccEEEecccchhhhHhhcCcccccccccccc
Q 037851 781 LQNLINLERICHGQLRAESFCNLKTIKVGSCHKLKNLFS-FSIAKFLPQLKTIEVTECKIVEEIFVSSNEEAIGEIALAQ 859 (1053)
Q Consensus 781 l~~~~~L~~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~-~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~ 859 (1053)
+.++.....++... .+.+++|+.|++++|. +..... ...+..+++|++|++++|......+. ....+++
T Consensus 332 l~~n~~~~~~~~~~--~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-------~~~~l~~ 401 (606)
T 3t6q_A 332 IKGNTKRLELGTGC--LENLENLRELDLSHDD-IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTE-------AFKECPQ 401 (606)
T ss_dssp CCSCSSCCBCCSST--TTTCTTCCEEECCSSC-CCEEEESTTTTTTCTTCCEEECCSCSCEEECTT-------TTTTCTT
T ss_pred CCCCCcccccchhh--hhccCcCCEEECCCCc-cccccCcchhcccCCCCCEEECCCCcCCcCCHH-------HhcCCcc
Confidence 77754322332211 2456777777777764 333320 12356677777777777643221111 1123667
Q ss_pred cceEecCCCccccccccc-ccccccccchhhhhHhhhccccCCCCccccccccccccceEeecccccceeccCCcccccc
Q 037851 860 VRSLILRTLPLLASFSAF-VKTTSTVEAKHNEIILENESQLHTPSSLFNVKLVLPNLEVLEVRDLNVAKIWHNQFSAAMS 938 (1053)
Q Consensus 860 L~~L~l~~c~~L~si~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 938 (1053)
|++|++.++......+.. ......++.+.. ..+......+ .....+++|++|++++|.+.+.... ....+
T Consensus 402 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l---~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~~ 472 (606)
T 3t6q_A 402 LELLDLAFTRLKVKDAQSPFQNLHLLKVLNL---SHSLLDISSE----QLFDGLPALQHLNLQGNHFPKGNIQ--KTNSL 472 (606)
T ss_dssp CSEEECTTCCEECCTTCCTTTTCTTCCEEEC---TTCCCBTTCT----TTTTTCTTCCEEECTTCBCGGGEEC--SSCGG
T ss_pred CCeEECCCCcCCCcccchhhhCcccCCEEEC---CCCccCCcCH----HHHhCCCCCCEEECCCCCCCccccc--cchhh
Confidence 777777776443322211 101011111110 0000000000 0112267777777777765541100 01123
Q ss_pred ccCCcccEEEEecCccccccccchhHhhhccCcEEEEecccccceeecccCccccCCcccccccCccccccccccccccC
Q 037851 939 CNVQNLTRLVVLDCHKLRYVFSYSTAKRLGQLKHLVISRCPLLEEIVGKEGGVEADPSFVFPQLTILKLSSLPELRAFYP 1018 (1053)
Q Consensus 939 ~~l~~L~~L~i~~c~~l~~l~~~~~l~~l~sL~~L~i~~c~~l~~i~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~l~~ 1018 (1053)
..+++|+.|++++| +++.+.+ ..+..+++|+.|++++|. ++.+. +.....+++| .|++++| .++.++.
T Consensus 473 ~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~~~-------~~~l~~l~~L-~L~L~~N-~l~~~~~ 540 (606)
T 3t6q_A 473 QTLGRLEILVLSFC-DLSSIDQ-HAFTSLKMMNHVDLSHNR-LTSSS-------IEALSHLKGI-YLNLASN-HISIILP 540 (606)
T ss_dssp GGCTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEECCSSC-CCGGG-------GGGGTTCCSC-EEECCSS-CCCCCCG
T ss_pred ccCCCccEEECCCC-ccCccCh-hhhccccCCCEEECCCCc-cCcCC-------hhHhCccccc-EEECcCC-cccccCH
Confidence 45677777777775 4555533 345677777777777775 33221 1123345666 7777766 3444443
Q ss_pred CCCccCCCCcceEEEecCC
Q 037851 1019 GIHTLECPILTKLEVSFCH 1037 (1053)
Q Consensus 1019 ~~~~~~~~sL~~L~I~~Cp 1037 (1053)
... ..+++|++|++++||
T Consensus 541 ~~~-~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 541 SLL-PILSQQRTINLRQNP 558 (606)
T ss_dssp GGH-HHHHTSSEEECTTCC
T ss_pred hhc-ccCCCCCEEeCCCCC
Confidence 221 134777888887765
No 7
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.96 E-value=7.2e-27 Score=287.14 Aligned_cols=128 Identities=24% Similarity=0.315 Sum_probs=109.1
Q ss_pred CcceEEeeccCCCCCCCCCcccccCCCceeEEeecCccccCC-CcccccCccCcEEEcCCcccCCc--cccCCCCCCcEE
Q 037851 502 KCSRISLYDNNINSPLKIPDNIFIGTPKLKVLDFTRMRLLSL-PSSIHLLTDLRTLCLDGCELEDI--RVIGELKDLEIL 578 (1053)
Q Consensus 502 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~l-p~~i~~l~~Lr~L~L~~~~~~~~--~~i~~l~~L~~L 578 (1053)
..+++.+..+.... +++..|.++++|++|++++|.+..+ |..+.++++|++|++++|.+..+ ..++++++|++|
T Consensus 26 ~l~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L 102 (680)
T 1ziw_A 26 NITVLNLTHNQLRR---LPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTEL 102 (680)
T ss_dssp TCSEEECCSSCCCC---CCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEE
T ss_pred CCcEEECCCCCCCC---cCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEE
Confidence 47888888776654 6777788999999999999998876 66788999999999999998883 358999999999
Q ss_pred EccCCCCcccc-hhhhccCCCCeeeccCcccccccCcchhcCCccCceeecccccc
Q 037851 579 SLQGSKIEQLP-REIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSI 633 (1053)
Q Consensus 579 ~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 633 (1053)
++++|.+..+| ..++++++|++|++++| .+...++..++++++|++|++++|.+
T Consensus 103 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l 157 (680)
T 1ziw_A 103 HLMSNSIQKIKNNPFVKQKNLITLDLSHN-GLSSTKLGTQVQLENLQELLLSNNKI 157 (680)
T ss_dssp ECCSSCCCCCCSCTTTTCTTCCEEECCSS-CCSCCCCCSSSCCTTCCEEECCSSCC
T ss_pred ECCCCccCccChhHccccCCCCEEECCCC-cccccCchhhcccccCCEEEccCCcc
Confidence 99999998886 57899999999999994 67777777788999999999998876
No 8
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.95 E-value=3e-27 Score=292.89 Aligned_cols=488 Identities=17% Similarity=0.088 Sum_probs=331.9
Q ss_pred cceEEeeccCCCCCCCCCcccccCCCceeEEeecCcccc-CCCcccccCccCcEEEcCCcccCC-ccccCCCCCCcEEEc
Q 037851 503 CSRISLYDNNINSPLKIPDNIFIGTPKLKVLDFTRMRLL-SLPSSIHLLTDLRTLCLDGCELED-IRVIGELKDLEILSL 580 (1053)
Q Consensus 503 ~~~l~l~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~-~lp~~i~~l~~Lr~L~L~~~~~~~-~~~i~~l~~L~~L~l 580 (1053)
.+.+.+..+..... +|. +.++++|++|++++|.+. .+|..+..+++|++|++++|.+.. ++.. .+++|++|++
T Consensus 202 L~~L~Ls~n~l~~~--~~~--l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~l~~L~~L~L 276 (768)
T 3rgz_A 202 LEFLDVSSNNFSTG--IPF--LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL-PLKSLQYLSL 276 (768)
T ss_dssp CCEEECCSSCCCSC--CCB--CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC-CCTTCCEEEC
T ss_pred CCEEECcCCcCCCC--Ccc--cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc-ccCCCCEEEC
Confidence 56777777665542 333 678999999999999987 568889999999999999998876 3333 8899999999
Q ss_pred cCCCCc-ccchhhhcc-CCCCeeeccCcccccccCcchhcCCccCceeecccccccccccCCcccccCCCh-hhhcCCCC
Q 037851 581 QGSKIE-QLPREIGQL-TQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASL-DELKNLSR 657 (1053)
Q Consensus 581 ~~~~l~-~lp~~i~~L-~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~l~~ 657 (1053)
++|.+. .+|..+..+ ++|++|++++| .+....|..++++++|++|++++|.+. ...+ ..+.++++
T Consensus 277 ~~n~l~~~ip~~~~~~~~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~L~~n~l~-----------~~ip~~~l~~l~~ 344 (768)
T 3rgz_A 277 AENKFTGEIPDFLSGACDTLTGLDLSGN-HFYGAVPPFFGSCSLLESLALSSNNFS-----------GELPMDTLLKMRG 344 (768)
T ss_dssp CSSEEEESCCCCSCTTCTTCSEEECCSS-EEEECCCGGGGGCTTCCEEECCSSEEE-----------EECCHHHHTTCTT
T ss_pred cCCccCCccCHHHHhhcCcCCEEECcCC-cCCCccchHHhcCCCccEEECCCCccc-----------CcCCHHHHhcCCC
Confidence 999887 888888775 99999999995 566555666899999999999998762 2233 34888999
Q ss_pred CCeEEEEeccCC-CCCCcccc-c-cCceEEEEEcc----cCCCCC--cccccceeeeccCCcc-cccccc-ccCccceee
Q 037851 658 LTSLEINILDAG-ILPSGFFS-R-KLKRYRIVVGF----QWAPFD--KYKTRRTLKLKLNSRI-CLEEWR-GMKNVEYLR 726 (1053)
Q Consensus 658 L~~L~i~~~~~~-~~~~~~~~-~-~L~~l~l~~~~----~~~~~~--~~~~l~~l~l~~~~~~-~~~~~~-~l~~L~~L~ 726 (1053)
|+.|+++.+... .+|..+.. . +|+.|.+..+. ...... ....++.+.+..+... .+|.+. .+++|+.|+
T Consensus 345 L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 424 (768)
T 3rgz_A 345 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLH 424 (768)
T ss_dssp CCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEE
T ss_pred CCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEE
Confidence 999999887754 56665543 3 78888875332 122222 2567888888877654 344444 889999999
Q ss_pred ccccCCcccccccccccccccccEEEeecCCCceeecCCcccccCcCCccceeecccccccccccccccCccccCCccEE
Q 037851 727 LDELPGLTNVLHDLDGEGFAELKHLNVKNNSNFLCIVDPLQVRCGAFPMLESLVLQNLINLERICHGQLRAESFCNLKTI 806 (1053)
Q Consensus 727 L~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L 806 (1053)
++++.-.......+ ..+++|+.|++++|.. .+........+++|+.|+++++.-...++ ...+.+++|+.|
T Consensus 425 Ls~N~l~~~~p~~l--~~l~~L~~L~L~~n~l----~~~~p~~~~~l~~L~~L~L~~N~l~~~~p---~~l~~l~~L~~L 495 (768)
T 3rgz_A 425 LSFNYLSGTIPSSL--GSLSKLRDLKLWLNML----EGEIPQELMYVKTLETLILDFNDLTGEIP---SGLSNCTNLNWI 495 (768)
T ss_dssp CCSSEEESCCCGGG--GGCTTCCEEECCSSCC----CSCCCGGGGGCTTCCEEECCSSCCCSCCC---GGGGGCTTCCEE
T ss_pred CcCCcccCcccHHH--hcCCCCCEEECCCCcc----cCcCCHHHcCCCCceEEEecCCcccCcCC---HHHhcCCCCCEE
Confidence 99875332222233 6789999999999862 22223335678999999999864322332 223578999999
Q ss_pred eEccCCCccccCCchhhhccCCccEEEecccchhhhHhhcCcccccccccccccceEecCCCcccccccccccccccccc
Q 037851 807 KVGSCHKLKNLFSFSIAKFLPQLKTIEVTECKIVEEIFVSSNEEAIGEIALAQVRSLILRTLPLLASFSAFVKTTSTVEA 886 (1053)
Q Consensus 807 ~i~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~si~~~~~~~~~l~~ 886 (1053)
++++|. +....+ ..+..+++|+.|++++|.....++.. ...+++|+.|++.+|+-...+|...........
T Consensus 496 ~L~~N~-l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~-------l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~ 566 (768)
T 3rgz_A 496 SLSNNR-LTGEIP-KWIGRLENLAILKLSNNSFSGNIPAE-------LGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIA 566 (768)
T ss_dssp ECCSSC-CCSCCC-GGGGGCTTCCEEECCSSCCEEECCGG-------GGGCTTCCEEECCSSEEESBCCGGGGTTTTCBC
T ss_pred EccCCc-cCCcCC-hHHhcCCCCCEEECCCCcccCcCCHH-------HcCCCCCCEEECCCCccCCcCChHHhcccchhh
Confidence 999986 443333 35788999999999999765444422 224899999999999877777765322111100
Q ss_pred hh--------------------------------hhhHhhhccccCC--C-Cc----cccccccccccceEeecccccce
Q 037851 887 KH--------------------------------NEIILENESQLHT--P-SS----LFNVKLVLPNLEVLEVRDLNVAK 927 (1053)
Q Consensus 887 ~~--------------------------------~~~~~~~~~~~~~--~-~~----~~~~~~~~~~L~~L~l~~~~~~~ 927 (1053)
.. ............. . .. .-..+..+++|++|++++|++..
T Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g 646 (768)
T 3rgz_A 567 ANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSG 646 (768)
T ss_dssp CSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBS
T ss_pred hhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccc
Confidence 00 0000000000000 0 00 00112236889999999998775
Q ss_pred eccCCccccccccCCcccEEEEecCccccccccchhHhhhccCcEEEEecccccceeecccCccccCCcccccccCcccc
Q 037851 928 IWHNQFSAAMSCNVQNLTRLVVLDCHKLRYVFSYSTAKRLGQLKHLVISRCPLLEEIVGKEGGVEADPSFVFPQLTILKL 1007 (1053)
Q Consensus 928 ~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~l~~l~sL~~L~i~~c~~l~~i~~~~~~~~~~~~~~~p~L~~L~l 1007 (1053)
..+ ..++.+++|+.|+++++ +++...| ..+.++++|+.|++++|..-..+ +.....+++|++|+|
T Consensus 647 ~ip-----~~l~~l~~L~~L~Ls~N-~l~g~ip-~~l~~L~~L~~LdLs~N~l~g~i--------p~~l~~l~~L~~L~l 711 (768)
T 3rgz_A 647 YIP-----KEIGSMPYLFILNLGHN-DISGSIP-DEVGDLRGLNILDLSSNKLDGRI--------PQAMSALTMLTEIDL 711 (768)
T ss_dssp CCC-----GGGGGCTTCCEEECCSS-CCCSCCC-GGGGGCTTCCEEECCSSCCEECC--------CGGGGGCCCCSEEEC
T ss_pred cCC-----HHHhccccCCEEeCcCC-ccCCCCC-hHHhCCCCCCEEECCCCcccCcC--------ChHHhCCCCCCEEEC
Confidence 332 23467899999999984 5665544 46788999999999999743333 223456788999999
Q ss_pred ccccccccccCCCCccCCCCcceEEEecCCCCcccc
Q 037851 1008 SSLPELRAFYPGIHTLECPILTKLEVSFCHKLESFS 1043 (1053)
Q Consensus 1008 ~~c~~L~~l~~~~~~~~~~sL~~L~I~~Cp~L~~l~ 1043 (1053)
++|+--..+|.+.. +.++....+.+||.|.-.|
T Consensus 712 s~N~l~g~iP~~~~---~~~~~~~~~~gN~~Lcg~~ 744 (768)
T 3rgz_A 712 SNNNLSGPIPEMGQ---FETFPPAKFLNNPGLCGYP 744 (768)
T ss_dssp CSSEEEEECCSSSS---GGGSCGGGGCSCTEEESTT
T ss_pred cCCcccccCCCchh---hccCCHHHhcCCchhcCCC
Confidence 99876667776532 3455566678888887544
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.95 E-value=6.2e-27 Score=283.74 Aligned_cols=465 Identities=17% Similarity=0.159 Sum_probs=298.3
Q ss_pred CCCcccccCCCceeEEeecCccccCC-CcccccCccCcEEEcCCcccCC--ccccCCCCCCcEEEccCCCCccc-chhhh
Q 037851 518 KIPDNIFIGTPKLKVLDFTRMRLLSL-PSSIHLLTDLRTLCLDGCELED--IRVIGELKDLEILSLQGSKIEQL-PREIG 593 (1053)
Q Consensus 518 ~~~~~~~~~~~~Lr~L~l~~~~~~~l-p~~i~~l~~Lr~L~L~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~l-p~~i~ 593 (1053)
.+|..+ -+.+++|++++|.+..+ |..+.++++|++|++++|.+.. +..|+++++|++|++++|.+..+ |..++
T Consensus 26 ~iP~~l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 102 (606)
T 3t6q_A 26 EIPGTL---PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALS 102 (606)
T ss_dssp SCCTTS---CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTS
T ss_pred cCcCCC---CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhc
Confidence 366654 24789999999999987 6689999999999999999877 57899999999999999999866 77899
Q ss_pred ccCCCCeeeccCcccccccCcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCCeEEEEeccCCCCCC
Q 037851 594 QLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLEINILDAGILPS 673 (1053)
Q Consensus 594 ~L~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~ 673 (1053)
++++|++|++++ +.+..+++..++++++|++|++++|.+. ...+..+..+++|+.|+++.+....++.
T Consensus 103 ~l~~L~~L~L~~-n~i~~l~~~~~~~l~~L~~L~L~~n~l~-----------~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 170 (606)
T 3t6q_A 103 GPKALKHLFFIQ-TGISSIDFIPLHNQKTLESLYLGSNHIS-----------SIKLPKGFPTEKLKVLDFQNNAIHYLSK 170 (606)
T ss_dssp SCTTCCEEECTT-SCCSCGGGSCCTTCTTCCEEECCSSCCC-----------CCCCCTTCCCTTCCEEECCSSCCCEECH
T ss_pred ccccccEeeccc-cCcccCCcchhccCCcccEEECCCCccc-----------ccCcccccCCcccCEEEcccCcccccCh
Confidence 999999999999 4688876677899999999999999872 2223444458999999999887665544
Q ss_pred ccc--cccCceEEEEEcc--c---CCCCCcccccceeeeccCCcc--------------------------cccc--ccc
Q 037851 674 GFF--SRKLKRYRIVVGF--Q---WAPFDKYKTRRTLKLKLNSRI--------------------------CLEE--WRG 718 (1053)
Q Consensus 674 ~~~--~~~L~~l~l~~~~--~---~~~~~~~~~l~~l~l~~~~~~--------------------------~~~~--~~~ 718 (1053)
..+ ..+|+.+.+.... . ....-....++.+.+..+... .++. +..
T Consensus 171 ~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~ 250 (606)
T 3t6q_A 171 EDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEG 250 (606)
T ss_dssp HHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGG
T ss_pred hhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhch
Confidence 322 2566633332211 0 011112234555555443210 0000 001
Q ss_pred c--CccceeeccccCCcccccccccccccccccEEEeecCCCceeecCCcccccCcCCccceeecccccccccccccccC
Q 037851 719 M--KNVEYLRLDELPGLTNVLHDLDGEGFAELKHLNVKNNSNFLCIVDPLQVRCGAFPMLESLVLQNLINLERICHGQLR 796 (1053)
Q Consensus 719 l--~~L~~L~L~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~ 796 (1053)
+ .+|+.|++.++.- ....+. ....+++|+.|+++++. +..++ .....+++|+.|+++++ .+..... ..
T Consensus 251 l~~~~L~~L~l~~n~l-~~~~~~-~~~~l~~L~~L~l~~n~-l~~lp----~~l~~l~~L~~L~l~~n-~l~~~~~--~~ 320 (606)
T 3t6q_A 251 LCEMSVESINLQKHYF-FNISSN-TFHCFSGLQELDLTATH-LSELP----SGLVGLSTLKKLVLSAN-KFENLCQ--IS 320 (606)
T ss_dssp GGGSEEEEEECTTCCC-SSCCTT-TTTTCTTCSEEECTTSC-CSCCC----SSCCSCTTCCEEECTTC-CCSBGGG--GC
T ss_pred hhcCceeEEEeecCcc-CccCHH-HhccccCCCEEeccCCc-cCCCC----hhhcccccCCEEECccC-CcCcCch--hh
Confidence 1 2688888887643 222222 12678999999999985 33332 22467899999999985 3444422 23
Q ss_pred ccccCCccEEeEccCCCccccCCchhhhccCCccEEEecccchhhhHhhcCcccccccccccccceEecCCCcccccccc
Q 037851 797 AESFCNLKTIKVGSCHKLKNLFSFSIAKFLPQLKTIEVTECKIVEEIFVSSNEEAIGEIALAQVRSLILRTLPLLASFSA 876 (1053)
Q Consensus 797 ~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~si~~ 876 (1053)
...+++|+.|++.+|.....++. ..+..+++|++|++++|........ ......+++|++|++.+|.-....+.
T Consensus 321 ~~~l~~L~~L~l~~n~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~ 394 (606)
T 3t6q_A 321 ASNFPSLTHLSIKGNTKRLELGT-GCLENLENLRELDLSHDDIETSDCC-----NLQLRNLSHLQSLNLSYNEPLSLKTE 394 (606)
T ss_dssp GGGCTTCSEEECCSCSSCCBCCS-STTTTCTTCCEEECCSSCCCEEEES-----TTTTTTCTTCCEEECCSCSCEEECTT
T ss_pred hhccCcCCEEECCCCCcccccch-hhhhccCcCCEEECCCCccccccCc-----chhcccCCCCCEEECCCCcCCcCCHH
Confidence 35789999999999864445543 3477899999999999864322100 01123589999999999864333232
Q ss_pred cccccccccchhhhhHhhhccccCCCCccccccccccccceEeecccccceeccCCccccccccCCcccEEEEecCcccc
Q 037851 877 FVKTTSTVEAKHNEIILENESQLHTPSSLFNVKLVLPNLEVLEVRDLNVAKIWHNQFSAAMSCNVQNLTRLVVLDCHKLR 956 (1053)
Q Consensus 877 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~ 956 (1053)
.......++.+.. ..+......+.. .+..+++|++|++++|.+...... .+..+++|++|++++|. +.
T Consensus 395 ~~~~l~~L~~L~l---~~n~l~~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~-----~~~~l~~L~~L~L~~n~-l~ 462 (606)
T 3t6q_A 395 AFKECPQLELLDL---AFTRLKVKDAQS---PFQNLHLLKVLNLSHSLLDISSEQ-----LFDGLPALQHLNLQGNH-FP 462 (606)
T ss_dssp TTTTCTTCSEEEC---TTCCEECCTTCC---TTTTCTTCCEEECTTCCCBTTCTT-----TTTTCTTCCEEECTTCB-CG
T ss_pred HhcCCccCCeEEC---CCCcCCCcccch---hhhCcccCCEEECCCCccCCcCHH-----HHhCCCCCCEEECCCCC-CC
Confidence 2222122222211 111100000001 122377888888888876654332 23457888888888864 33
Q ss_pred c--cccchhHhhhccCcEEEEecccccceeecccCccccCCcccccccCccccccccccccccCCCCccCCCCcceEEEe
Q 037851 957 Y--VFSYSTAKRLGQLKHLVISRCPLLEEIVGKEGGVEADPSFVFPQLTILKLSSLPELRAFYPGIHTLECPILTKLEVS 1034 (1053)
Q Consensus 957 ~--l~~~~~l~~l~sL~~L~i~~c~~l~~i~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~l~~~~~~~~~~sL~~L~I~ 1034 (1053)
. ++....+..+++|+.|++++|. ++.+. +.....+++|++|++++|. ++.++.... ..+++| .|+++
T Consensus 463 ~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~-------~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l-~~l~~L-~L~L~ 531 (606)
T 3t6q_A 463 KGNIQKTNSLQTLGRLEILVLSFCD-LSSID-------QHAFTSLKMMNHVDLSHNR-LTSSSIEAL-SHLKGI-YLNLA 531 (606)
T ss_dssp GGEECSSCGGGGCTTCCEEECTTSC-CCEEC-------TTTTTTCTTCCEEECCSSC-CCGGGGGGG-TTCCSC-EEECC
T ss_pred ccccccchhhccCCCccEEECCCCc-cCccC-------hhhhccccCCCEEECCCCc-cCcCChhHh-Cccccc-EEECc
Confidence 3 1122456778888888888886 44442 1223457888888888874 444333211 245778 88887
Q ss_pred cC
Q 037851 1035 FC 1036 (1053)
Q Consensus 1035 ~C 1036 (1053)
+|
T Consensus 532 ~N 533 (606)
T 3t6q_A 532 SN 533 (606)
T ss_dssp SS
T ss_pred CC
Confidence 76
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.95 E-value=1.1e-26 Score=281.38 Aligned_cols=463 Identities=20% Similarity=0.156 Sum_probs=281.8
Q ss_pred cceEEeeccCCCCCCCCCcccccCCCceeEEeecCccccCC-CcccccCccCcEEEcCCcccCC--ccccCCCCCCcEEE
Q 037851 503 CSRISLYDNNINSPLKIPDNIFIGTPKLKVLDFTRMRLLSL-PSSIHLLTDLRTLCLDGCELED--IRVIGELKDLEILS 579 (1053)
Q Consensus 503 ~~~l~l~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~l-p~~i~~l~~Lr~L~L~~~~~~~--~~~i~~l~~L~~L~ 579 (1053)
.+.+.+..+.... +++..|.++++|++|++++|.+..+ |..|+++++|++|++++|.+.. +..++++++|++|+
T Consensus 58 L~~L~Ls~n~l~~---i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 134 (606)
T 3vq2_A 58 LQWLDLSRCEIET---IEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLN 134 (606)
T ss_dssp CCEEECTTCCCCE---ECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEE
T ss_pred CcEEeCCCCcccc---cCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEe
Confidence 6777877765543 6666788999999999999999987 7889999999999999999877 36799999999999
Q ss_pred ccCCCCc--ccchhhhccCCCCeeeccCcccccccCcchhcCCccCc----eeecccccccccccCCccc----------
Q 037851 580 LQGSKIE--QLPREIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLE----ELYMANCSIEWEHLGPGIE---------- 643 (1053)
Q Consensus 580 l~~~~l~--~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~l~~L~----~L~l~~~~~~~~~~~~~~~---------- 643 (1053)
+++|.+. .+|..++++++|++|++++ +.+..+++..++.+++|+ +|++++|.+..........
T Consensus 135 L~~n~l~~~~lp~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~ 213 (606)
T 3vq2_A 135 VAHNFIHSCKLPAYFSNLTNLVHVDLSY-NYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRG 213 (606)
T ss_dssp CCSSCCCCCCCCGGGGTCTTCCEEECCS-SCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEES
T ss_pred CCCCcccceechHhHhhcCCCCEEEccC-CcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccC
Confidence 9999998 5899999999999999999 467777777777777665 7888888763211100000
Q ss_pred ---ccCCChhhhcCCCCCCeEEEEeccCCC------CCCccc----cccCceEEEEEcccC----CCCCcccccceeeec
Q 037851 644 ---RSNASLDELKNLSRLTSLEINILDAGI------LPSGFF----SRKLKRYRIVVGFQW----APFDKYKTRRTLKLK 706 (1053)
Q Consensus 644 ---~~~~~~~~L~~l~~L~~L~i~~~~~~~------~~~~~~----~~~L~~l~l~~~~~~----~~~~~~~~l~~l~l~ 706 (1053)
........++++++|+.+.+....... ++.... ...++.+.+.....+ ..+.....++.+.+.
T Consensus 214 n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~ 293 (606)
T 3vq2_A 214 NFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLA 293 (606)
T ss_dssp CCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEE
T ss_pred CccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEec
Confidence 001112234445555544443322111 000000 011222222111111 113445566777777
Q ss_pred cCCccccccccccCccceeeccccCCcccccccccccccccccEEEeecCCCceeecCCcccccCcCCccceeecccccc
Q 037851 707 LNSRICLEEWRGMKNVEYLRLDELPGLTNVLHDLDGEGFAELKHLNVKNNSNFLCIVDPLQVRCGAFPMLESLVLQNLIN 786 (1053)
Q Consensus 707 ~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~p~L~~L~l~~~~~ 786 (1053)
.+....++....+++|++|++.++.. . .++.+ .+++|+.|++++|.....+ ....+++|+.|+++++ .
T Consensus 294 ~~~~~~l~~l~~~~~L~~L~l~~n~l-~-~lp~~---~l~~L~~L~l~~n~~~~~~------~~~~l~~L~~L~ls~n-~ 361 (606)
T 3vq2_A 294 GVSIKYLEDVPKHFKWQSLSIIRCQL-K-QFPTL---DLPFLKSLTLTMNKGSISF------KKVALPSLSYLDLSRN-A 361 (606)
T ss_dssp SCCCCCCCCCCTTCCCSEEEEESCCC-S-SCCCC---CCSSCCEEEEESCSSCEEC------CCCCCTTCCEEECCSS-C
T ss_pred CccchhhhhccccccCCEEEcccccC-c-ccccC---CCCccceeeccCCcCccch------hhccCCCCCEEECcCC-c
Confidence 66655555333677777777777654 2 23332 5677777777777533322 2346677777777764 2
Q ss_pred cccccccccCccccCCccEEeEccCCCccccCCchhhhccCCccEEEecccchhhhHhhcCcccccccccccccceEecC
Q 037851 787 LERICHGQLRAESFCNLKTIKVGSCHKLKNLFSFSIAKFLPQLKTIEVTECKIVEEIFVSSNEEAIGEIALAQVRSLILR 866 (1053)
Q Consensus 787 L~~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 866 (1053)
+............+++|+.|++++|. +..++. .+..+++|+.|++++|......+... ...+++|++|+++
T Consensus 362 l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~------~~~l~~L~~L~l~ 432 (606)
T 3vq2_A 362 LSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSA--NFMGLEELQHLDFQHSTLKRVTEFSA------FLSLEKLLYLDIS 432 (606)
T ss_dssp EEEEEECCHHHHCCSCCCEEECCSCS-EEEECC--CCTTCTTCCEEECTTSEEESTTTTTT------TTTCTTCCEEECT
T ss_pred cCCCcchhhhhccCCcccEeECCCCc-cccchh--hccCCCCCCeeECCCCccCCccChhh------hhccccCCEEECc
Confidence 33221111222456677777777664 555442 35566777777777664433222111 1135666777776
Q ss_pred CCcccccccccccccccccchhhhhHhhhccccCCCCccccccccccccceEeecccccceeccCCccccccccCCcccE
Q 037851 867 TLPLLASFSAFVKTTSTVEAKHNEIILENESQLHTPSSLFNVKLVLPNLEVLEVRDLNVAKIWHNQFSAAMSCNVQNLTR 946 (1053)
Q Consensus 867 ~c~~L~si~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~ 946 (1053)
+|......+........++.+.. ..+...... .-..+..+++|++|++++|.+..+.... +..+++|++
T Consensus 433 ~n~l~~~~~~~~~~l~~L~~L~l---~~n~l~~~~---~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-----~~~l~~L~~ 501 (606)
T 3vq2_A 433 YTNTKIDFDGIFLGLTSLNTLKM---AGNSFKDNT---LSNVFANTTNLTFLDLSKCQLEQISWGV-----FDTLHRLQL 501 (606)
T ss_dssp TSCCEECCTTTTTTCTTCCEEEC---TTCEEGGGE---ECSCCTTCTTCCEEECTTSCCCEECTTT-----TTTCTTCCE
T ss_pred CCCCCccchhhhcCCCCCCEEEC---CCCcCCCcc---hHHhhccCCCCCEEECCCCcCCccChhh-----hcccccCCE
Confidence 66544333322211111211111 011000000 0011223899999999999888765433 356899999
Q ss_pred EEEecCccccccccchhHhhhccCcEEEEecccccceeecccCccccCCccccc-ccCccccccccc
Q 037851 947 LVVLDCHKLRYVFSYSTAKRLGQLKHLVISRCPLLEEIVGKEGGVEADPSFVFP-QLTILKLSSLPE 1012 (1053)
Q Consensus 947 L~i~~c~~l~~l~~~~~l~~l~sL~~L~i~~c~~l~~i~~~~~~~~~~~~~~~p-~L~~L~l~~c~~ 1012 (1053)
|++++| +++.+.+ ..+..+++|+.|++++|. ++.++.. ...+| +|+.|+++++|-
T Consensus 502 L~Ls~N-~l~~~~~-~~~~~l~~L~~L~l~~N~-l~~~p~~--------~~~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 502 LNMSHN-NLLFLDS-SHYNQLYSLSTLDCSFNR-IETSKGI--------LQHFPKSLAFFNLTNNSV 557 (606)
T ss_dssp EECCSS-CCSCEEG-GGTTTCTTCCEEECTTSC-CCCEESC--------GGGSCTTCCEEECCSCCC
T ss_pred EECCCC-cCCCcCH-HHccCCCcCCEEECCCCc-CcccCHh--------HhhhcccCcEEEccCCCc
Confidence 999997 6766644 467889999999999997 6666431 33455 599999998764
No 11
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.95 E-value=1.4e-26 Score=286.90 Aligned_cols=459 Identities=18% Similarity=0.094 Sum_probs=226.1
Q ss_pred ccCCCceeEEeecCccccCCCcccccCccCcEEEcCCcccCC-ccccCCCCCCcEEEccCCCCc-ccchhhhccCCCCee
Q 037851 524 FIGTPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDGCELED-IRVIGELKDLEILSLQGSKIE-QLPREIGQLTQLKLL 601 (1053)
Q Consensus 524 ~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~-~~~i~~l~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L 601 (1053)
+.++++|++|++++|.+....+ +..+++|++|++++|.+.. ++.++++++|++|++++|.+. .+|..++++++|++|
T Consensus 174 ~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 252 (768)
T 3rgz_A 174 SDGCGELKHLAISGNKISGDVD-VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLL 252 (768)
T ss_dssp TTCCTTCCEEECCSSEEESCCB-CTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEE
T ss_pred hccCCCCCEEECCCCcccccCC-cccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEE
Confidence 4556666666666666654332 2566666666666666554 344666666666666666665 455666666666666
Q ss_pred eccCcccccccCcchhcCCccCceeecccccccccccCCcc--------------cccCCChhhhcCCCCCCeEEEEecc
Q 037851 602 DLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGI--------------ERSNASLDELKNLSRLTSLEINILD 667 (1053)
Q Consensus 602 ~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--------------~~~~~~~~~L~~l~~L~~L~i~~~~ 667 (1053)
++++|. +....|. ..+++|++|++++|.+......... .-....+..++++++|+.|+++.+.
T Consensus 253 ~Ls~n~-l~~~~~~--~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~ 329 (768)
T 3rgz_A 253 NISSNQ-FVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN 329 (768)
T ss_dssp ECCSSC-CEESCCC--CCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSE
T ss_pred ECCCCc-ccCccCc--cccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCc
Confidence 666643 3322222 1555666666665554200000000 0011223334444455555544443
Q ss_pred CC-CCCCc-cc-cccCceEEEEEccc----CCCCCccc-ccceeeeccCCccc-ccccc---ccCccceeeccccCCccc
Q 037851 668 AG-ILPSG-FF-SRKLKRYRIVVGFQ----WAPFDKYK-TRRTLKLKLNSRIC-LEEWR---GMKNVEYLRLDELPGLTN 735 (1053)
Q Consensus 668 ~~-~~~~~-~~-~~~L~~l~l~~~~~----~~~~~~~~-~l~~l~l~~~~~~~-~~~~~---~l~~L~~L~L~~~~~~~~ 735 (1053)
.. .+|.. +. ..+|+.|.+..+.. ........ .++.+++..+.... .+.+. .+++|++|++.++.....
T Consensus 330 l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 409 (768)
T 3rgz_A 330 FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGK 409 (768)
T ss_dssp EEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEE
T ss_pred ccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccc
Confidence 22 23322 11 13344443322110 01111111 34444444332211 11111 144455555554432211
Q ss_pred ccccccccccccccEEEeecCCCceeecCCcccccCcCCccceeecccccccccccccccCccccCCccEEeEccCCCcc
Q 037851 736 VLHDLDGEGFAELKHLNVKNNSNFLCIVDPLQVRCGAFPMLESLVLQNLINLERICHGQLRAESFCNLKTIKVGSCHKLK 815 (1053)
Q Consensus 736 ~~~~l~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L~i~~c~~l~ 815 (1053)
....+ ..+++|+.|++++|. +.+......+.+++|+.|++.++.-...++ .....+++|+.|++.+|. +.
T Consensus 410 ~p~~l--~~l~~L~~L~Ls~N~----l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p---~~~~~l~~L~~L~L~~N~-l~ 479 (768)
T 3rgz_A 410 IPPTL--SNCSELVSLHLSFNY----LSGTIPSSLGSLSKLRDLKLWLNMLEGEIP---QELMYVKTLETLILDFND-LT 479 (768)
T ss_dssp CCGGG--GGCTTCCEEECCSSE----EESCCCGGGGGCTTCCEEECCSSCCCSCCC---GGGGGCTTCCEEECCSSC-CC
T ss_pred cCHHH--hcCCCCCEEECcCCc----ccCcccHHHhcCCCCCEEECCCCcccCcCC---HHHcCCCCceEEEecCCc-cc
Confidence 11111 344555555555543 111111223344555555555533111111 112345555555555553 22
Q ss_pred ccCCchhhhccCCccEEEecccchhhhHhhcCcccccccccccccceEecCCCcccccccccccccccccchhhhhHhhh
Q 037851 816 NLFSFSIAKFLPQLKTIEVTECKIVEEIFVSSNEEAIGEIALAQVRSLILRTLPLLASFSAFVKTTSTVEAKHNEIILEN 895 (1053)
Q Consensus 816 ~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~si~~~~~~~~~l~~~~~~~~~~~ 895 (1053)
...+ ..+..+++|+.|++++|.....++.. ...+++|++|++++|.-...+|...
T Consensus 480 ~~~p-~~l~~l~~L~~L~L~~N~l~~~~p~~-------~~~l~~L~~L~L~~N~l~~~~p~~l----------------- 534 (768)
T 3rgz_A 480 GEIP-SGLSNCTNLNWISLSNNRLTGEIPKW-------IGRLENLAILKLSNNSFSGNIPAEL----------------- 534 (768)
T ss_dssp SCCC-GGGGGCTTCCEEECCSSCCCSCCCGG-------GGGCTTCCEEECCSSCCEEECCGGG-----------------
T ss_pred CcCC-HHHhcCCCCCEEEccCCccCCcCChH-------HhcCCCCCEEECCCCcccCcCCHHH-----------------
Confidence 2212 13455555666666555433222211 1125556666666654443333221
Q ss_pred ccccCCCCccccccccccccceEeecccccce-eccCCc-----------------------------------------
Q 037851 896 ESQLHTPSSLFNVKLVLPNLEVLEVRDLNVAK-IWHNQF----------------------------------------- 933 (1053)
Q Consensus 896 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~----------------------------------------- 933 (1053)
..+++|++|++++|++.. ++...+
T Consensus 535 --------------~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (768)
T 3rgz_A 535 --------------GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIR 600 (768)
T ss_dssp --------------GGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCC
T ss_pred --------------cCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccccccccc
Confidence 226677777777765441 111000
Q ss_pred --------------------c---ccccccCCcccEEEEecCccccccccchhHhhhccCcEEEEecccccceeecccCc
Q 037851 934 --------------------S---AAMSCNVQNLTRLVVLDCHKLRYVFSYSTAKRLGQLKHLVISRCPLLEEIVGKEGG 990 (1053)
Q Consensus 934 --------------------~---~~~~~~l~~L~~L~i~~c~~l~~l~~~~~l~~l~sL~~L~i~~c~~l~~i~~~~~~ 990 (1053)
. ......+++|+.|+++++ +++...| ..+.++++|+.|++++|.....++
T Consensus 601 ~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N-~l~g~ip-~~l~~l~~L~~L~Ls~N~l~g~ip----- 673 (768)
T 3rgz_A 601 SEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN-MLSGYIP-KEIGSMPYLFILNLGHNDISGSIP----- 673 (768)
T ss_dssp GGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSS-CCBSCCC-GGGGGCTTCCEEECCSSCCCSCCC-----
T ss_pred chhhhccccccccccccceecccCchhhhccccccEEECcCC-cccccCC-HHHhccccCCEEeCcCCccCCCCC-----
Confidence 0 011334678999999885 6766544 467899999999999998433442
Q ss_pred cccCCcccccccCccccccccccccccCCCCccCCCCcceEEEecCCCCccccCCCC
Q 037851 991 VEADPSFVFPQLTILKLSSLPELRAFYPGIHTLECPILTKLEVSFCHKLESFSSEPP 1047 (1053)
Q Consensus 991 ~~~~~~~~~p~L~~L~l~~c~~L~~l~~~~~~~~~~sL~~L~I~~Cp~L~~l~~~~~ 1047 (1053)
.....+++|+.|+|++|.--..+|..+. .+++|++|++++|+---.+|..+.
T Consensus 674 ---~~l~~L~~L~~LdLs~N~l~g~ip~~l~--~l~~L~~L~ls~N~l~g~iP~~~~ 725 (768)
T 3rgz_A 674 ---DEVGDLRGLNILDLSSNKLDGRIPQAMS--ALTMLTEIDLSNNNLSGPIPEMGQ 725 (768)
T ss_dssp ---GGGGGCTTCCEEECCSSCCEECCCGGGG--GCCCCSEEECCSSEEEEECCSSSS
T ss_pred ---hHHhCCCCCCEEECCCCcccCcCChHHh--CCCCCCEEECcCCcccccCCCchh
Confidence 2345679999999999865557776554 359999999999864445555543
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.94 E-value=2.6e-26 Score=276.30 Aligned_cols=450 Identities=19% Similarity=0.236 Sum_probs=299.2
Q ss_pred CcceEEeeccCCCCCCCCCcccccCCCceeEEeecCccccCCC-cccccCccCcEEEcCCcccCC--ccccCCCCCCcEE
Q 037851 502 KCSRISLYDNNINSPLKIPDNIFIGTPKLKVLDFTRMRLLSLP-SSIHLLTDLRTLCLDGCELED--IRVIGELKDLEIL 578 (1053)
Q Consensus 502 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp-~~i~~l~~Lr~L~L~~~~~~~--~~~i~~l~~L~~L 578 (1053)
..+.+.+.++.... +++..|.++++|++|++++|.+..++ ..+.++++|++|++++|.+.. +..++++++|++|
T Consensus 29 ~l~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (570)
T 2z63_A 29 STKNLDLSFNPLRH---LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (570)
T ss_dssp SCCEEECCSCCCCE---ECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred cccEEEccCCccCc---cChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccc
Confidence 47788887776554 55666789999999999999998774 568999999999999999877 3689999999999
Q ss_pred EccCCCCcccch-hhhccCCCCeeeccCcccccccC-cchhcCCccCceeecccccccccccCCcccccCCChhhhcCCC
Q 037851 579 SLQGSKIEQLPR-EIGQLTQLKLLDLSNCSKLKVIA-PNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLS 656 (1053)
Q Consensus 579 ~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~ 656 (1053)
++++|.+..+|. .++++++|++|++++| .+..+. |..++++++|++|++++|.+.. .....++.+.
T Consensus 106 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~~~~l~~L~~L~l~~n~l~~-----------~~~~~~~~l~ 173 (570)
T 2z63_A 106 VAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKIQS-----------IYCTDLRVLH 173 (570)
T ss_dssp ECTTSCCCCSTTCSCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECTTSCCCE-----------ECGGGGHHHH
T ss_pred cccccccccCCCccccccccccEEecCCC-ccceecChhhhcccCCCCEEeCcCCccce-----------ecHHHccchh
Confidence 999999998875 6899999999999994 565532 5568999999999999987631 1122333333
Q ss_pred CC----CeEEEEeccCCCCCCcccc-ccCceEEEEEcccC-----------------------------------CCCCc
Q 037851 657 RL----TSLEINILDAGILPSGFFS-RKLKRYRIVVGFQW-----------------------------------APFDK 696 (1053)
Q Consensus 657 ~L----~~L~i~~~~~~~~~~~~~~-~~L~~l~l~~~~~~-----------------------------------~~~~~ 696 (1053)
+| ..|+++.+....++...+. .+|+.+.+..+... ..+..
T Consensus 174 ~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~ 253 (570)
T 2z63_A 174 QMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG 253 (570)
T ss_dssp TCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGG
T ss_pred ccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhcc
Confidence 33 4666665554433332221 34445444322100 00001
Q ss_pred cc--ccceeeeccCCc--ccccccc-ccCccceeeccccCCcccccccccccccccccEEEeecCCCceeecCCcccccC
Q 037851 697 YK--TRRTLKLKLNSR--ICLEEWR-GMKNVEYLRLDELPGLTNVLHDLDGEGFAELKHLNVKNNSNFLCIVDPLQVRCG 771 (1053)
Q Consensus 697 ~~--~l~~l~l~~~~~--~~~~~~~-~l~~L~~L~L~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~ 771 (1053)
.. .+..+.+..+.. ...+.+. .+++|+.|++.++... . ++... ..+ +|+.|++.+|. +..++ ..
T Consensus 254 l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~-l~~~~-~~~-~L~~L~l~~n~-~~~l~------~~ 322 (570)
T 2z63_A 254 LCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-R-VKDFS-YNF-GWQHLELVNCK-FGQFP------TL 322 (570)
T ss_dssp GGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-S-CCBCC-SCC-CCSEEEEESCB-CSSCC------BC
T ss_pred ccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-h-hhhhh-ccC-CccEEeeccCc-ccccC------cc
Confidence 11 112222222211 1122222 6899999999886432 2 22222 445 99999999986 22221 24
Q ss_pred cCCccceeecccccccccccccccCccccCCccEEeEccCCCccccCC-chhhhccCCccEEEecccchhhhHhhcCccc
Q 037851 772 AFPMLESLVLQNLINLERICHGQLRAESFCNLKTIKVGSCHKLKNLFS-FSIAKFLPQLKTIEVTECKIVEEIFVSSNEE 850 (1053)
Q Consensus 772 ~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~-~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~ 850 (1053)
.+++|+.|.+.++.... ..+...+++|+.|++++|. +..... ...+..+++|+.|++++|.... ++..
T Consensus 323 ~l~~L~~L~l~~n~~~~-----~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~---- 391 (570)
T 2z63_A 323 KLKSLKRLTFTSNKGGN-----AFSEVDLPSLEFLDLSRNG-LSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSN---- 391 (570)
T ss_dssp BCSSCCEEEEESCBSCC-----BCCCCBCTTCCEEECCSSC-CBEEEEEEHHHHTCSCCCEEECCSCSEEE-EEEE----
T ss_pred cccccCEEeCcCCcccc-----ccccccCCCCCEEeCcCCc-cCccccccccccccCccCEEECCCCcccc-cccc----
Confidence 78999999999865332 2233679999999999884 444321 2346789999999999985332 2211
Q ss_pred ccccccccccceEecCCCcccccccccccccccccchhhhhHhhhccccCCCCccccccccccccceEeecccccceecc
Q 037851 851 AIGEIALAQVRSLILRTLPLLASFSAFVKTTSTVEAKHNEIILENESQLHTPSSLFNVKLVLPNLEVLEVRDLNVAKIWH 930 (1053)
Q Consensus 851 ~~~~~~~~~L~~L~l~~c~~L~si~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 930 (1053)
...+++|++|++.+|.-....+.. .+..+++|++|++++|.+.....
T Consensus 392 ---~~~l~~L~~L~l~~n~l~~~~~~~------------------------------~~~~l~~L~~L~l~~n~l~~~~~ 438 (570)
T 2z63_A 392 ---FLGLEQLEHLDFQHSNLKQMSEFS------------------------------VFLSLRNLIYLDISHTHTRVAFN 438 (570)
T ss_dssp ---EETCTTCCEEECTTSEEESCTTSC------------------------------TTTTCTTCCEEECTTSCCEECCT
T ss_pred ---ccccCCCCEEEccCCccccccchh------------------------------hhhcCCCCCEEeCcCCcccccch
Confidence 234889999999988533221110 11228899999999998776543
Q ss_pred CCccccccccCCcccEEEEecCccccccccchhHhhhccCcEEEEecccccceeecccCccccCCcccccccCccccccc
Q 037851 931 NQFSAAMSCNVQNLTRLVVLDCHKLRYVFSYSTAKRLGQLKHLVISRCPLLEEIVGKEGGVEADPSFVFPQLTILKLSSL 1010 (1053)
Q Consensus 931 ~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~l~~l~sL~~L~i~~c~~l~~i~~~~~~~~~~~~~~~p~L~~L~l~~c 1010 (1053)
.. +..+++|+.|++.+|.--....| ..+..+++|+.|++++|. ++.+. +.....+++|++|++++|
T Consensus 439 ~~-----~~~l~~L~~L~l~~n~l~~~~~p-~~~~~l~~L~~L~l~~n~-l~~~~-------~~~~~~l~~L~~L~l~~n 504 (570)
T 2z63_A 439 GI-----FNGLSSLEVLKMAGNSFQENFLP-DIFTELRNLTFLDLSQCQ-LEQLS-------PTAFNSLSSLQVLNMASN 504 (570)
T ss_dssp TT-----TTTCTTCCEEECTTCEEGGGEEC-SCCTTCTTCCEEECTTSC-CCEEC-------TTTTTTCTTCCEEECCSS
T ss_pred hh-----hhcCCcCcEEECcCCcCccccch-hhhhcccCCCEEECCCCc-cccCC-------hhhhhcccCCCEEeCCCC
Confidence 32 35688999999999753212223 456889999999999996 44442 122345789999999987
Q ss_pred cccccccCCCCccCCCCcceEEEecCC
Q 037851 1011 PELRAFYPGIHTLECPILTKLEVSFCH 1037 (1053)
Q Consensus 1011 ~~L~~l~~~~~~~~~~sL~~L~I~~Cp 1037 (1053)
.++.++.... ..+++|++|++++||
T Consensus 505 -~l~~~~~~~~-~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 505 -QLKSVPDGIF-DRLTSLQKIWLHTNP 529 (570)
T ss_dssp -CCSCCCTTTT-TTCTTCCEEECCSSC
T ss_pred -cCCCCCHHHh-hcccCCcEEEecCCc
Confidence 5777765433 357999999999865
No 13
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.94 E-value=8.9e-26 Score=277.42 Aligned_cols=499 Identities=18% Similarity=0.168 Sum_probs=257.8
Q ss_pred cceEEeeccCCCCCCCCCcccccCCCceeEEeecCccccCCCc-ccccCccCcEEEcCCcccCC--ccccCCCCCCcEEE
Q 037851 503 CSRISLYDNNINSPLKIPDNIFIGTPKLKVLDFTRMRLLSLPS-SIHLLTDLRTLCLDGCELED--IRVIGELKDLEILS 579 (1053)
Q Consensus 503 ~~~l~l~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~-~i~~l~~Lr~L~L~~~~~~~--~~~i~~l~~L~~L~ 579 (1053)
.+.+.+..+.... +++..|.++++|++|++++|.+..+|+ .+..+++|++|++++|.+.. +..++++++|++|+
T Consensus 51 L~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 127 (680)
T 1ziw_A 51 LTSLDVGFNTISK---LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLD 127 (680)
T ss_dssp CSEEECCSSCCCC---CCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEE
T ss_pred CcEEECCCCccCc---cCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEE
Confidence 5667776665543 555667788888888888888888876 58888888888888888877 35688888888888
Q ss_pred ccCCCCccc-chhhhccCCCCeeeccCcccccccCcchhc--CCccCceeecccccccccccCCcccccCCChh------
Q 037851 580 LQGSKIEQL-PREIGQLTQLKLLDLSNCSKLKVIAPNVLS--NLSQLEELYMANCSIEWEHLGPGIERSNASLD------ 650 (1053)
Q Consensus 580 l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~------ 650 (1053)
+++|.+... |..++++++|++|++++| .+..+++..++ .+++|++|++++|.+......... ....+.
T Consensus 128 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~l~~ 204 (680)
T 1ziw_A 128 LSHNGLSSTKLGTQVQLENLQELLLSNN-KIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFH--AIGRLFGLFLNN 204 (680)
T ss_dssp CCSSCCSCCCCCSSSCCTTCCEEECCSS-CCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGG--GSSEECEEECTT
T ss_pred CCCCcccccCchhhcccccCCEEEccCC-cccccCHHHhhccccccccEEECCCCcccccChhhhh--hhhhhhhhhccc
Confidence 888888754 456788888888888884 56666665443 557888888888865321110000 000000
Q ss_pred ------------hhcCCCCCCeEEEEeccCCCCCCc-ccc---ccCceEEEEEcc----cCCCCCcccccceeeeccCCc
Q 037851 651 ------------ELKNLSRLTSLEINILDAGILPSG-FFS---RKLKRYRIVVGF----QWAPFDKYKTRRTLKLKLNSR 710 (1053)
Q Consensus 651 ------------~L~~l~~L~~L~i~~~~~~~~~~~-~~~---~~L~~l~l~~~~----~~~~~~~~~~l~~l~l~~~~~ 710 (1053)
..-..++|+.|+++++.....+.. +.. .+|+.|.+..+. ....+...+.++.+.+..+..
T Consensus 205 ~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 284 (680)
T 1ziw_A 205 VQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI 284 (680)
T ss_dssp CCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCB
T ss_pred cccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCcc
Confidence 000235777888776654433222 211 347777664332 112344556777777776654
Q ss_pred cccc-c-ccccCccceeeccccCCccc----ccc---cccccccccccEEEeecCCCceeecCCcccccCcCCccceeec
Q 037851 711 ICLE-E-WRGMKNVEYLRLDELPGLTN----VLH---DLDGEGFAELKHLNVKNNSNFLCIVDPLQVRCGAFPMLESLVL 781 (1053)
Q Consensus 711 ~~~~-~-~~~l~~L~~L~L~~~~~~~~----~~~---~l~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~p~L~~L~l 781 (1053)
...+ . +..+++|+.|++.++..... .++ ......+++|+.|++++|. +..+ .......+++|+.|++
T Consensus 285 ~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~-l~~~---~~~~~~~l~~L~~L~L 360 (680)
T 1ziw_A 285 QHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND-IPGI---KSNMFTGLINLKYLSL 360 (680)
T ss_dssp SEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCC-BCCC---CTTTTTTCTTCCEEEC
T ss_pred CccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCc-cCCC---ChhHhccccCCcEEEC
Confidence 4332 2 22677888888775421110 111 1122456778888877764 2211 1112345667777777
Q ss_pred cccc-ccccccccccCccccCCccEEeEccCCCccccCCchhhhccCCccEEEecccchhhhHhhcCccccccccccccc
Q 037851 782 QNLI-NLERICHGQLRAESFCNLKTIKVGSCHKLKNLFSFSIAKFLPQLKTIEVTECKIVEEIFVSSNEEAIGEIALAQV 860 (1053)
Q Consensus 782 ~~~~-~L~~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~L 860 (1053)
+++. .+..+....+.....++|+.|++.+|. +..+++ ..+..+++|+.|++++|.....++... ...+++|
T Consensus 361 s~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~------~~~l~~L 432 (680)
T 1ziw_A 361 SNSFTSLRTLTNETFVSLAHSPLHILNLTKNK-ISKIES-DAFSWLGHLEVLDLGLNEIGQELTGQE------WRGLENI 432 (680)
T ss_dssp TTCBSCCCEECTTTTGGGTTSCCCEEECTTSC-CCEECT-TTTTTCTTCCEEECCSSCCEEECCSGG------GTTCTTC
T ss_pred CCCchhhhhcchhhhcccccCcCceEECCCCC-CCeECh-hhhhCCCCCCEEeCCCCcCccccCccc------ccCcccc
Confidence 6542 112221111111122455555555543 333322 234455555555555553322111100 0123444
Q ss_pred ceEecCCCccc--------------------------ccccccccccccccchhhhhHhhhccccCCCCccccccccccc
Q 037851 861 RSLILRTLPLL--------------------------ASFSAFVKTTSTVEAKHNEIILENESQLHTPSSLFNVKLVLPN 914 (1053)
Q Consensus 861 ~~L~l~~c~~L--------------------------~si~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 914 (1053)
++|++.+|... ..+|........++.+. ...+... ..+. ..+..+++
T Consensus 433 ~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~---Ls~N~l~-~i~~---~~~~~l~~ 505 (680)
T 1ziw_A 433 FEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILD---LSNNNIA-NIND---DMLEGLEK 505 (680)
T ss_dssp CEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEE---CCSSCCC-CCCT---TTTTTCTT
T ss_pred cEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEE---CCCCCCC-cCCh---hhhccccc
Confidence 44444444311 11111110000011000 0000000 0000 01122556
Q ss_pred cceEeecccccceeccCCcccc---ccccCCcccEEEEecCccccccccchhHhhhccCcEEEEecccccceeecccCcc
Q 037851 915 LEVLEVRDLNVAKIWHNQFSAA---MSCNVQNLTRLVVLDCHKLRYVFSYSTAKRLGQLKHLVISRCPLLEEIVGKEGGV 991 (1053)
Q Consensus 915 L~~L~l~~~~~~~~~~~~~~~~---~~~~l~~L~~L~i~~c~~l~~l~~~~~l~~l~sL~~L~i~~c~~l~~i~~~~~~~ 991 (1053)
|++|++++|.+..++...++.. .+..+++|+.|+++++ +++.+ +...+.++++|+.|++++|. ++.+.
T Consensus 506 L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i-~~~~~~~l~~L~~L~Ls~N~-l~~l~------ 576 (680)
T 1ziw_A 506 LEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEI-PVEVFKDLFELKIIDLGLNN-LNTLP------ 576 (680)
T ss_dssp CCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSC-CCCCC------
T ss_pred cCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCC-CCCCC-CHHHcccccCcceeECCCCC-CCcCC------
Confidence 6666666666655544332211 1345566666666663 45544 32345666666666666664 44331
Q ss_pred ccCCcccccccCccccccccccccccCCCCccCCCCcceEEEecCC
Q 037851 992 EADPSFVFPQLTILKLSSLPELRAFYPGIHTLECPILTKLEVSFCH 1037 (1053)
Q Consensus 992 ~~~~~~~~p~L~~L~l~~c~~L~~l~~~~~~~~~~sL~~L~I~~Cp 1037 (1053)
......+++|+.|+++++ .++.++.......+++|++|++++||
T Consensus 577 -~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~N~ 620 (680)
T 1ziw_A 577 -ASVFNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRFNP 620 (680)
T ss_dssp -TTTTTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTTCC
T ss_pred -HhHhCCCCCCCEEECCCC-cCCccChhHhcccccccCEEEccCCC
Confidence 112234566777777665 45555443211124667777776644
No 14
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.94 E-value=1.6e-25 Score=280.29 Aligned_cols=471 Identities=17% Similarity=0.152 Sum_probs=276.2
Q ss_pred CcceEEeeccCCCCCCCCCcccccCCCceeEEeecCccc-cCC-CcccccCccCcEEEcCCcccCC--ccccCCCCCCcE
Q 037851 502 KCSRISLYDNNINSPLKIPDNIFIGTPKLKVLDFTRMRL-LSL-PSSIHLLTDLRTLCLDGCELED--IRVIGELKDLEI 577 (1053)
Q Consensus 502 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~-~~l-p~~i~~l~~Lr~L~L~~~~~~~--~~~i~~l~~L~~ 577 (1053)
..+.+.+.++.+.. +++..|.++++|++|++++|.. ..+ |..+.++++|++|+|++|.+.. |..++++++|++
T Consensus 25 ~l~~LdLs~N~i~~---i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 25 TTERLLLSFNYIRT---VTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp TCCEEEEESCCCCE---ECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CcCEEECCCCcCCc---cChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence 46777777766543 4445567888888888888843 345 6678888888888888888766 567888888888
Q ss_pred EEccCCCCcc-cchh--hhccCCCCeeeccCcccccccC-cchhcCCccCceeecccccccccccCCcccccCCChhhhc
Q 037851 578 LSLQGSKIEQ-LPRE--IGQLTQLKLLDLSNCSKLKVIA-PNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELK 653 (1053)
Q Consensus 578 L~l~~~~l~~-lp~~--i~~L~~L~~L~l~~~~~l~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~ 653 (1053)
|+|++|.+.. +|.. ++++++|++|++++| .+..++ +..++++++|++|++++|.+. ......+.
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls~N~i~-----------~~~~~~l~ 169 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSNQIF-----------LVCEHELE 169 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEESSCCC-----------CCCSGGGH
T ss_pred eeCcCCCCCcccccCccccccCCCCEEECCCC-cccccccchhHhhCCCCCEEECCCCcCC-----------eeCHHHcc
Confidence 8888888774 5554 778888888888884 454443 345788888888888887662 22233344
Q ss_pred CC--CCCCeEEEEeccCCCC-CCcc-------ccccCceEEEEEcccC----CCC---CcccccceeeeccCC-------
Q 037851 654 NL--SRLTSLEINILDAGIL-PSGF-------FSRKLKRYRIVVGFQW----APF---DKYKTRRTLKLKLNS------- 709 (1053)
Q Consensus 654 ~l--~~L~~L~i~~~~~~~~-~~~~-------~~~~L~~l~l~~~~~~----~~~---~~~~~l~~l~l~~~~------- 709 (1053)
.+ ++|+.|+++.+..... +..+ ....|+.|.+..+... ... .....+..+.+..+.
T Consensus 170 ~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~ 249 (844)
T 3j0a_A 170 PLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGF 249 (844)
T ss_dssp HHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSC
T ss_pred cccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccc
Confidence 33 6677777776653321 1111 0112555554322100 000 011122233322100
Q ss_pred --c--ccccccc--ccCccceeeccccCCcccccccccccccccccEEEeecCCCceeecCCcccccCcCCccceeeccc
Q 037851 710 --R--ICLEEWR--GMKNVEYLRLDELPGLTNVLHDLDGEGFAELKHLNVKNNSNFLCIVDPLQVRCGAFPMLESLVLQN 783 (1053)
Q Consensus 710 --~--~~~~~~~--~l~~L~~L~L~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~p~L~~L~l~~ 783 (1053)
. .....+. ..++|+.|+++++.........+ ..+++|+.|++++|. +..+. ......+++|+.|++++
T Consensus 250 ~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~n~-i~~~~---~~~~~~l~~L~~L~Ls~ 323 (844)
T 3j0a_A 250 HNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVF--ETLKDLKVLNLAYNK-INKIA---DEAFYGLDNLQVLNLSY 323 (844)
T ss_dssp SSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCS--SSCCCCCEEEEESCC-CCEEC---TTTTTTCSSCCEEEEES
T ss_pred cccCCCChhhhhccccCCccEEECCCCcccccChhhh--hcCCCCCEEECCCCc-CCCCC---hHHhcCCCCCCEEECCC
Confidence 0 0000111 23678888888764332211222 567888888888875 22221 12245678888888887
Q ss_pred ccccccccccccCccccCCccEEeEccCCCccccCCchhhhccCCccEEEecccchhhhHhhcCcccccccccccccceE
Q 037851 784 LINLERICHGQLRAESFCNLKTIKVGSCHKLKNLFSFSIAKFLPQLKTIEVTECKIVEEIFVSSNEEAIGEIALAQVRSL 863 (1053)
Q Consensus 784 ~~~L~~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~L~~L 863 (1053)
+ .+..+... ....+++|+.|+++++ .+..+++ ..+..+++|+.|++++|.. ..+ ..+++|+.|
T Consensus 324 N-~l~~~~~~--~~~~l~~L~~L~L~~N-~i~~~~~-~~~~~l~~L~~L~Ls~N~l-~~i-----------~~~~~L~~L 386 (844)
T 3j0a_A 324 N-LLGELYSS--NFYGLPKVAYIDLQKN-HIAIIQD-QTFKFLEKLQTLDLRDNAL-TTI-----------HFIPSIPDI 386 (844)
T ss_dssp C-CCSCCCSC--SCSSCTTCCEEECCSC-CCCCCCS-SCSCSCCCCCEEEEETCCS-CCC-----------SSCCSCSEE
T ss_pred C-CCCccCHH--HhcCCCCCCEEECCCC-CCCccCh-hhhcCCCCCCEEECCCCCC-Ccc-----------cCCCCcchh
Confidence 4 44444222 2346788888888887 4666644 3456788888888888742 211 126778888
Q ss_pred ecCCCcccccccccccccccccchhhhhHhhhccccCCCCccccccccccccceEeecccccceeccCCccccccccCCc
Q 037851 864 ILRTLPLLASFSAFVKTTSTVEAKHNEIILENESQLHTPSSLFNVKLVLPNLEVLEVRDLNVAKIWHNQFSAAMSCNVQN 943 (1053)
Q Consensus 864 ~l~~c~~L~si~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~ 943 (1053)
.+.+++ +..++........ +. ...+. ............+++|++|++++|++..+..... ...+++
T Consensus 387 ~l~~N~-l~~l~~~~~~l~~---L~---ls~N~---l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~----~~~~~~ 452 (844)
T 3j0a_A 387 FLSGNK-LVTLPKINLTANL---IH---LSENR---LENLDILYFLLRVPHLQILILNQNRFSSCSGDQT----PSENPS 452 (844)
T ss_dssp EEESCC-CCCCCCCCTTCCE---EE---CCSCC---CCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSS----SCSCTT
T ss_pred ccCCCC-cccccccccccce---ee---cccCc---cccCchhhhhhcCCccceeeCCCCcccccccccc----cccCCc
Confidence 887764 3344432111000 00 00000 0000000011137889999999887775433211 234678
Q ss_pred ccEEEEecCccccccc----cchhHhhhccCcEEEEecccccceeecccCccccCCcccccccCccccccccccccccCC
Q 037851 944 LTRLVVLDCHKLRYVF----SYSTAKRLGQLKHLVISRCPLLEEIVGKEGGVEADPSFVFPQLTILKLSSLPELRAFYPG 1019 (1053)
Q Consensus 944 L~~L~i~~c~~l~~l~----~~~~l~~l~sL~~L~i~~c~~l~~i~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~l~~~ 1019 (1053)
|+.|+++++ .++... ....+.++++|+.|++++|. ++.+. +.....+++|+.|+|+++ +|+.++.+
T Consensus 453 L~~L~Ls~N-~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~-------~~~~~~l~~L~~L~Ls~N-~l~~l~~~ 522 (844)
T 3j0a_A 453 LEQLFLGEN-MLQLAWETELCWDVFEGLSHLQVLYLNHNY-LNSLP-------PGVFSHLTALRGLSLNSN-RLTVLSHN 522 (844)
T ss_dssp CCBCEEESC-CCSSSCCSCCCSSCSSCBCCEECCCCCHHH-HTTCC-------TTSSSSCCSCSEEEEESC-CCSSCCCC
T ss_pred cccccCCCC-ccccccccccchhhhcCcccccEEECCCCc-ccccC-------hhHccchhhhheeECCCC-CCCccChh
Confidence 888988885 343221 11345678889999999885 55442 223445788999999886 67887765
Q ss_pred CCccCCCCcceEEEecCC
Q 037851 1020 IHTLECPILTKLEVSFCH 1037 (1053)
Q Consensus 1020 ~~~~~~~sL~~L~I~~Cp 1037 (1053)
... ++|+.|+++++.
T Consensus 523 ~~~---~~L~~L~Ls~N~ 537 (844)
T 3j0a_A 523 DLP---ANLEILDISRNQ 537 (844)
T ss_dssp CCC---SCCCEEEEEEEC
T ss_pred hhh---ccccEEECCCCc
Confidence 433 789999998864
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.94 E-value=2.7e-26 Score=274.63 Aligned_cols=459 Identities=19% Similarity=0.192 Sum_probs=217.4
Q ss_pred cceEEeeccCCCCCCCCCcccccCCCceeEEeecCccccCCC-cccccCccCcEEEcCCcccCC-c-cccCCCCCCcEEE
Q 037851 503 CSRISLYDNNINSPLKIPDNIFIGTPKLKVLDFTRMRLLSLP-SSIHLLTDLRTLCLDGCELED-I-RVIGELKDLEILS 579 (1053)
Q Consensus 503 ~~~l~l~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp-~~i~~l~~Lr~L~L~~~~~~~-~-~~i~~l~~L~~L~ 579 (1053)
.+.+.+.++.... +++..|.++++|++|++++|.+..++ ..+..+++|++|++++|.+.. + ..++++++|++|+
T Consensus 28 L~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 28 MKSLDLSFNKITY---IGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp CCEEECCSSCCCE---ECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred ccEEECcCCccCc---cChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence 4555555554332 33334556666666666666666543 456666666666666666655 2 2366666666666
Q ss_pred ccCCCCcc--cchhhhccCCCCeeeccCcccccccCcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCC
Q 037851 580 LQGSKIEQ--LPREIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSR 657 (1053)
Q Consensus 580 l~~~~l~~--lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~ 657 (1053)
+++|.+.. .|..++++++|++|++++|..+..+++..++++++|++|++++|.+ ....+..++++++
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l-----------~~~~~~~l~~l~~ 173 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL-----------RNYQSQSLKSIRD 173 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC-----------CEECTTTTTTCSE
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcc-----------cccChhhhhcccc
Confidence 66666653 3455666666666666665445555555566666666666666654 1223344555556
Q ss_pred CCeEEEEeccCCCCCCccc--cccCceEEEEEcccCCCCCcccccceeeeccCCcccc---ccc--cccCccceeecccc
Q 037851 658 LTSLEINILDAGILPSGFF--SRKLKRYRIVVGFQWAPFDKYKTRRTLKLKLNSRICL---EEW--RGMKNVEYLRLDEL 730 (1053)
Q Consensus 658 L~~L~i~~~~~~~~~~~~~--~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~~~---~~~--~~l~~L~~L~L~~~ 730 (1053)
|+.|+++.+....++..+. ..+|+.|.+. .+..... +.. ..+++|+.|++.++
T Consensus 174 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~--------------------~n~l~~~~~~~~~~~~~~~~L~~L~l~~n 233 (549)
T 2z81_A 174 IHHLTLHLSESAFLLEIFADILSSVRYLELR--------------------DTNLARFQFSPLPVDEVSSPMKKLAFRGS 233 (549)
T ss_dssp EEEEEEECSBSTTHHHHHHHSTTTBSEEEEE--------------------SCBCTTCCCCCCSSCCCCCCCCEEEEESC
T ss_pred CceEecccCcccccchhhHhhcccccEEEcc--------------------CCccccccccccchhhhhhcccceecccc
Confidence 6666665554443333221 1444544443 3222111 000 13445555555543
Q ss_pred CCcccccccc--cccccccccEEEeecCCCceeecCC---cccccCcCCccceeeccccccccccc-ccccC--ccccCC
Q 037851 731 PGLTNVLHDL--DGEGFAELKHLNVKNNSNFLCIVDP---LQVRCGAFPMLESLVLQNLINLERIC-HGQLR--AESFCN 802 (1053)
Q Consensus 731 ~~~~~~~~~l--~~~~l~~L~~L~l~~~~~l~~i~~~---~~~~~~~~p~L~~L~l~~~~~L~~~~-~~~~~--~~~~~~ 802 (1053)
.........+ ....+++|+.|++.+|. +..+.+. .......+++|+.|.+.++. +..+. ..... ...+++
T Consensus 234 ~l~~~~~~~l~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-i~~~~~~~~l~~~~~~~~~ 311 (549)
T 2z81_A 234 VLTDESFNELLKLLRYILELSEVEFDDCT-LNGLGDFNPSESDVVSELGKVETVTIRRLH-IPQFYLFYDLSTVYSLLEK 311 (549)
T ss_dssp EEEHHHHHHHHGGGGGCTTCCEEEEESCE-EECCSCCCCCTTTCCCCCTTCCEEEEESCB-CSCGGGSCCCCHHHHHSTT
T ss_pred ccchhHHHHHHHHhhhhcccccccccccc-ccccccccccchhhhhhhcccccccccccc-cchhhhcccchhhhhhccc
Confidence 2111000000 00234455555555543 1111000 00012234455555544432 11100 00000 012344
Q ss_pred ccEEeEccCCCccccCCchhhhccCCccEEEecccchhhhHhhcCcccccccccccccceEecCCCccccccccc---cc
Q 037851 803 LKTIKVGSCHKLKNLFSFSIAKFLPQLKTIEVTECKIVEEIFVSSNEEAIGEIALAQVRSLILRTLPLLASFSAF---VK 879 (1053)
Q Consensus 803 L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~si~~~---~~ 879 (1053)
|+.|++.+|. +..+|. .....+++|+.|++++|.....++... .....+++|++|++++|. ++.++.. ..
T Consensus 312 L~~L~l~~n~-l~~ip~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~----~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~ 384 (549)
T 2z81_A 312 VKRITVENSK-VFLVPC-SFSQHLKSLEFLDLSENLMVEEYLKNS----ACKGAWPSLQTLVLSQNH-LRSMQKTGEILL 384 (549)
T ss_dssp CCEEEEESSC-CCCCCH-HHHHHCTTCCEEECCSSCCCHHHHHHH----TCTTSSTTCCEEECTTSC-CCCHHHHHHHGG
T ss_pred ceEEEeccCc-cccCCH-HHHhcCccccEEEccCCccccccccch----hhhhccccCcEEEccCCc-ccccccchhhhh
Confidence 5555555542 333322 122345555555555554333222100 000124455555555442 2221100 00
Q ss_pred ccccccchhhhhHhhhccccCCCCccccccccccccceEeecccccceeccCCccccccccCCcccEEEEecCccccccc
Q 037851 880 TTSTVEAKHNEIILENESQLHTPSSLFNVKLVLPNLEVLEVRDLNVAKIWHNQFSAAMSCNVQNLTRLVVLDCHKLRYVF 959 (1053)
Q Consensus 880 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~ 959 (1053)
....++.+. ...+... ..+ .....+++|++|++++|.+..++.. .+++|+.|++++| +++..+
T Consensus 385 ~l~~L~~L~---Ls~N~l~-~lp----~~~~~~~~L~~L~Ls~N~l~~l~~~--------~~~~L~~L~Ls~N-~l~~~~ 447 (549)
T 2z81_A 385 TLKNLTSLD---ISRNTFH-PMP----DSCQWPEKMRFLNLSSTGIRVVKTC--------IPQTLEVLDVSNN-NLDSFS 447 (549)
T ss_dssp GCTTCCEEE---CTTCCCC-CCC----SCCCCCTTCCEEECTTSCCSCCCTT--------SCTTCSEEECCSS-CCSCCC
T ss_pred cCCCCCEEE---CCCCCCc-cCC----hhhcccccccEEECCCCCcccccch--------hcCCceEEECCCC-Chhhhc
Confidence 000000000 0000000 000 0111267788888888876654321 2357888888885 555542
Q ss_pred cchhHhhhccCcEEEEecccccceeecccCccccCCcccccccCccccccccccccccCCCCccCCCCcceEEEecCCC
Q 037851 960 SYSTAKRLGQLKHLVISRCPLLEEIVGKEGGVEADPSFVFPQLTILKLSSLPELRAFYPGIHTLECPILTKLEVSFCHK 1038 (1053)
Q Consensus 960 ~~~~l~~l~sL~~L~i~~c~~l~~i~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~l~~~~~~~~~~sL~~L~I~~Cp~ 1038 (1053)
..+++|++|++++|. ++.++. ...+++|++|++++| .++.++.+.. ..+++|+.|++++||-
T Consensus 448 -----~~l~~L~~L~Ls~N~-l~~ip~---------~~~l~~L~~L~Ls~N-~l~~~~~~~~-~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 448 -----LFLPRLQELYISRNK-LKTLPD---------ASLFPVLLVMKISRN-QLKSVPDGIF-DRLTSLQKIWLHTNPW 509 (549)
T ss_dssp -----CCCTTCCEEECCSSC-CSSCCC---------GGGCTTCCEEECCSS-CCCCCCTTGG-GGCTTCCEEECCSSCB
T ss_pred -----ccCChhcEEECCCCc-cCcCCC---------cccCccCCEEecCCC-ccCCcCHHHH-hcCcccCEEEecCCCc
Confidence 357888888888885 555432 134788999999886 5676665422 2468899999988773
No 16
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=4.5e-26 Score=279.14 Aligned_cols=360 Identities=16% Similarity=0.148 Sum_probs=206.2
Q ss_pred ccccCCCCCCcEEEccCCCCcc------------------cchhhh--ccCCCCeeeccCcccccccCcchhcCCccCce
Q 037851 566 IRVIGELKDLEILSLQGSKIEQ------------------LPREIG--QLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEE 625 (1053)
Q Consensus 566 ~~~i~~l~~L~~L~l~~~~l~~------------------lp~~i~--~L~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~ 625 (1053)
|..+++|++|++|+|++|.+.. +|..++ ++++|++|++++|.....+| ..++++++|++
T Consensus 441 P~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP-~~l~~L~~L~~ 519 (876)
T 4ecn_A 441 SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLP-DFLYDLPELQS 519 (876)
T ss_dssp CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCC-GGGGGCSSCCE
T ss_pred hHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccCh-HHHhCCCCCCE
Confidence 4456667777777777776665 666666 77777777777654344443 44667777777
Q ss_pred eeccccc-ccccccCCcccccCCChh-------hhcCCCCCCeEEEEeccCCCCCC--ccccccCceEEEEEcccCCCCC
Q 037851 626 LYMANCS-IEWEHLGPGIERSNASLD-------ELKNLSRLTSLEINILDAGILPS--GFFSRKLKRYRIVVGFQWAPFD 695 (1053)
Q Consensus 626 L~l~~~~-~~~~~~~~~~~~~~~~~~-------~L~~l~~L~~L~i~~~~~~~~~~--~~~~~~L~~l~l~~~~~~~~~~ 695 (1053)
|++++|. +... ..+. .+..+++|+.|+++.+....+|. .+ .
T Consensus 520 L~Ls~N~~lsg~----------~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l-------------------~ 570 (876)
T 4ecn_A 520 LNIACNRGISAA----------QLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASL-------------------Q 570 (876)
T ss_dssp EECTTCTTSCHH----------HHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHH-------------------T
T ss_pred EECcCCCCcccc----------cchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhh-------------------h
Confidence 7777665 4110 1112 22344466677766665555544 22 1
Q ss_pred cccccceeeeccCCccccccccccCccceeeccccCCccccccccccccccc-ccEEEeecCCCceeecCCcccccCcCC
Q 037851 696 KYKTRRTLKLKLNSRICLEEWRGMKNVEYLRLDELPGLTNVLHDLDGEGFAE-LKHLNVKNNSNFLCIVDPLQVRCGAFP 774 (1053)
Q Consensus 696 ~~~~l~~l~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~l~~-L~~L~l~~~~~l~~i~~~~~~~~~~~p 774 (1053)
....|+.|.+..+....+|.+..+++|+.|+|+++... .....+ ..+++ |+.|++++|. +..++.. ......+
T Consensus 571 ~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~-~lp~~l--~~l~~~L~~L~Ls~N~-L~~lp~~--~~~~~~~ 644 (876)
T 4ecn_A 571 KMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIE-EIPEDF--CAFTDQVEGLGFSHNK-LKYIPNI--FNAKSVY 644 (876)
T ss_dssp TCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCS-CCCTTS--CEECTTCCEEECCSSC-CCSCCSC--CCTTCSS
T ss_pred cCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccc-cchHHH--hhccccCCEEECcCCC-CCcCchh--hhccccC
Confidence 22334444444444334453346778888888776533 222222 56777 8888888875 3333211 1122334
Q ss_pred ccceeecccccccccccccc--cCccccCCccEEeEccCCCccccCCchhhhccCCccEEEecccchhhhHhhcCcccc-
Q 037851 775 MLESLVLQNLINLERICHGQ--LRAESFCNLKTIKVGSCHKLKNLFSFSIAKFLPQLKTIEVTECKIVEEIFVSSNEEA- 851 (1053)
Q Consensus 775 ~L~~L~l~~~~~L~~~~~~~--~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~- 851 (1053)
+|+.|+++++.-...++... ...-.+++|+.|++++|. +..+|. .....+++|+.|++++|.. ..++.......
T Consensus 645 ~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~-L~~lp~-~~~~~l~~L~~L~Ls~N~L-~~ip~~~~~~~~ 721 (876)
T 4ecn_A 645 VMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE-IQKFPT-ELFATGSPISTIILSNNLM-TSIPENSLKPKD 721 (876)
T ss_dssp CEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSC-CCSCCH-HHHHTTCCCSEEECCSCCC-SCCCTTSSSCTT
T ss_pred CCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCc-CCccCH-HHHccCCCCCEEECCCCcC-CccChHHhcccc
Confidence 58888888753221111101 111134588888888874 666643 3445788888888888743 34432211100
Q ss_pred cccccccccceEecCCCcccccccccccccccccchhhhhHhhhccccCCCCccccccccccccceEeecccccceeccC
Q 037851 852 IGEIALAQVRSLILRTLPLLASFSAFVKTTSTVEAKHNEIILENESQLHTPSSLFNVKLVLPNLEVLEVRDLNVAKIWHN 931 (1053)
Q Consensus 852 ~~~~~~~~L~~L~l~~c~~L~si~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 931 (1053)
.....+++|+.|+|++| .+..+|.... ...+++|+.|++++|++..++.
T Consensus 722 ~~l~nl~~L~~L~Ls~N-~L~~lp~~l~-----------------------------~~~l~~L~~L~Ls~N~L~~lp~- 770 (876)
T 4ecn_A 722 GNYKNTYLLTTIDLRFN-KLTSLSDDFR-----------------------------ATTLPYLSNMDVSYNCFSSFPT- 770 (876)
T ss_dssp SCCTTGGGCCEEECCSS-CCCCCCGGGS-----------------------------TTTCTTCCEEECCSSCCSSCCC-
T ss_pred ccccccCCccEEECCCC-CCccchHHhh-----------------------------hccCCCcCEEEeCCCCCCccch-
Confidence 00112348888888887 4445443211 0027888999998887776532
Q ss_pred CccccccccCCcccEEEEecCc-----cccccccchhHhhhccCcEEEEecccccceeecccCccccCCcccccccCccc
Q 037851 932 QFSAAMSCNVQNLTRLVVLDCH-----KLRYVFSYSTAKRLGQLKHLVISRCPLLEEIVGKEGGVEADPSFVFPQLTILK 1006 (1053)
Q Consensus 932 ~~~~~~~~~l~~L~~L~i~~c~-----~l~~l~~~~~l~~l~sL~~L~i~~c~~l~~i~~~~~~~~~~~~~~~p~L~~L~ 1006 (1053)
.+..+++|+.|++++++ ++....| ..+.++++|+.|++++|. +..++. ..+++|+.|+
T Consensus 771 -----~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip-~~l~~L~~L~~L~Ls~N~-L~~Ip~----------~l~~~L~~Ld 833 (876)
T 4ecn_A 771 -----QPLNSSQLKAFGIRHQRDAEGNRILRQWP-TGITTCPSLIQLQIGSND-IRKVDE----------KLTPQLYILD 833 (876)
T ss_dssp -----GGGGCTTCCEEECCCCBCTTCCBCCCCCC-TTGGGCSSCCEEECCSSC-CCBCCS----------CCCSSSCEEE
T ss_pred -----hhhcCCCCCEEECCCCCCcccccccccCh-HHHhcCCCCCEEECCCCC-CCccCH----------hhcCCCCEEE
Confidence 23467888888887632 3343323 356788899999999887 355522 1346888899
Q ss_pred cccccc
Q 037851 1007 LSSLPE 1012 (1053)
Q Consensus 1007 l~~c~~ 1012 (1053)
|++|+-
T Consensus 834 Ls~N~l 839 (876)
T 4ecn_A 834 IADNPN 839 (876)
T ss_dssp CCSCTT
T ss_pred CCCCCC
Confidence 988864
No 17
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.94 E-value=1e-25 Score=272.31 Aligned_cols=385 Identities=15% Similarity=0.171 Sum_probs=227.3
Q ss_pred ccccCCCCCCcEEEccCCCCcc------------------cchhhh--ccCCCCeeeccCcccccccCcchhcCCccCce
Q 037851 566 IRVIGELKDLEILSLQGSKIEQ------------------LPREIG--QLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEE 625 (1053)
Q Consensus 566 ~~~i~~l~~L~~L~l~~~~l~~------------------lp~~i~--~L~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~ 625 (1053)
|..++++++|++|+|++|.+.. +|..++ ++++|++|++++|.....+ |..++++++|++
T Consensus 199 p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~ 277 (636)
T 4eco_A 199 SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKL-PTFLKALPEMQL 277 (636)
T ss_dssp CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSC-CTTTTTCSSCCE
T ss_pred CHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccC-hHHHhcCCCCCE
Confidence 4556677777777777777665 777766 7777777777775433444 344677777777
Q ss_pred eeccccc-ccccccCCcccccC-CChhhhcCC------CCCCeEEEEeccCCCCCC--ccccccCceEEEEEcccCCCCC
Q 037851 626 LYMANCS-IEWEHLGPGIERSN-ASLDELKNL------SRLTSLEINILDAGILPS--GFFSRKLKRYRIVVGFQWAPFD 695 (1053)
Q Consensus 626 L~l~~~~-~~~~~~~~~~~~~~-~~~~~L~~l------~~L~~L~i~~~~~~~~~~--~~~~~~L~~l~l~~~~~~~~~~ 695 (1053)
|++++|. +. . ..+..++.+ ++|+.|+++.+....+|. .+.
T Consensus 278 L~Ls~n~~l~-----------~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~------------------- 327 (636)
T 4eco_A 278 INVACNRGIS-----------GEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQ------------------- 327 (636)
T ss_dssp EECTTCTTSC-----------HHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHT-------------------
T ss_pred EECcCCCCCc-----------cccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhc-------------------
Confidence 7777765 41 1 223333333 667777776666555554 221
Q ss_pred cccccceeeeccCCcc-ccccccccCccceeeccccCCccccccccccccccc-ccEEEeecCCCceeecCCcccccCcC
Q 037851 696 KYKTRRTLKLKLNSRI-CLEEWRGMKNVEYLRLDELPGLTNVLHDLDGEGFAE-LKHLNVKNNSNFLCIVDPLQVRCGAF 773 (1053)
Q Consensus 696 ~~~~l~~l~l~~~~~~-~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~l~~-L~~L~l~~~~~l~~i~~~~~~~~~~~ 773 (1053)
....++.|.+..+... .+|.+..+++|+.|+++++.-. .....+ ..+++ |+.|++++|. +..++.. .....+
T Consensus 328 ~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~-~lp~~l--~~l~~~L~~L~Ls~N~-l~~lp~~--~~~~~l 401 (636)
T 4eco_A 328 KMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT-EIPANF--CGFTEQVENLSFAHNK-LKYIPNI--FDAKSV 401 (636)
T ss_dssp TCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEE-ECCTTS--EEECTTCCEEECCSSC-CSSCCSC--CCTTCS
T ss_pred cCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccc-cccHhh--hhhcccCcEEEccCCc-Ccccchh--hhhccc
Confidence 1223334444444333 3443336778888888875432 222222 56777 8888888876 3333221 112235
Q ss_pred CccceeecccccccccccccccC-----ccccCCccEEeEccCCCccccCCchhhhccCCccEEEecccchhhhHhhcCc
Q 037851 774 PMLESLVLQNLINLERICHGQLR-----AESFCNLKTIKVGSCHKLKNLFSFSIAKFLPQLKTIEVTECKIVEEIFVSSN 848 (1053)
Q Consensus 774 p~L~~L~l~~~~~L~~~~~~~~~-----~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~ 848 (1053)
++|+.|+++++. +.......+. .-.+++|+.|++++|. ++.+|. .....+++|++|++++|... .++....
T Consensus 402 ~~L~~L~Ls~N~-l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~-l~~lp~-~~~~~l~~L~~L~Ls~N~l~-~i~~~~~ 477 (636)
T 4eco_A 402 SVMSAIDFSYNE-IGSVDGKNFDPLDPTPFKGINVSSINLSNNQ-ISKFPK-ELFSTGSPLSSINLMGNMLT-EIPKNSL 477 (636)
T ss_dssp SCEEEEECCSSC-TTTTTTCSSCTTCSSCCCCCCEEEEECCSSC-CCSCCT-HHHHTTCCCSEEECCSSCCS-BCCSSSS
T ss_pred CccCEEECcCCc-CCCcchhhhcccccccccCCCCCEEECcCCc-cCcCCH-HHHccCCCCCEEECCCCCCC-CcCHHHh
Confidence 578888888753 3322111111 1145689999998874 666654 34567899999999998543 4433211
Q ss_pred ccc-cccccccccceEecCCCcccccccccccccccccchhhhhHhhhccccCCCCccccccccccccceEeecccccce
Q 037851 849 EEA-IGEIALAQVRSLILRTLPLLASFSAFVKTTSTVEAKHNEIILENESQLHTPSSLFNVKLVLPNLEVLEVRDLNVAK 927 (1053)
Q Consensus 849 ~~~-~~~~~~~~L~~L~l~~c~~L~si~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 927 (1053)
... .....+++|+.|+++++. +..+|.... ...+++|++|++++|.+..
T Consensus 478 ~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~-----------------------------~~~l~~L~~L~Ls~N~l~~ 527 (636)
T 4eco_A 478 KDENENFKNTYLLTSIDLRFNK-LTKLSDDFR-----------------------------ATTLPYLVGIDLSYNSFSK 527 (636)
T ss_dssp EETTEECTTGGGCCEEECCSSC-CCBCCGGGS-----------------------------TTTCTTCCEEECCSSCCSS
T ss_pred ccccccccccCCccEEECcCCc-CCccChhhh-----------------------------hccCCCcCEEECCCCCCCC
Confidence 100 000123389999998884 334443211 0128899999999998876
Q ss_pred eccCCccccccccCCcccEEEEecCc-----cccccccchhHhhhccCcEEEEecccccceeecccCccccCCccccccc
Q 037851 928 IWHNQFSAAMSCNVQNLTRLVVLDCH-----KLRYVFSYSTAKRLGQLKHLVISRCPLLEEIVGKEGGVEADPSFVFPQL 1002 (1053)
Q Consensus 928 ~~~~~~~~~~~~~l~~L~~L~i~~c~-----~l~~l~~~~~l~~l~sL~~L~i~~c~~l~~i~~~~~~~~~~~~~~~p~L 1002 (1053)
++. ....+++|+.|+++++. ++....| ..+..+++|++|++++|. ++.++. ..+++|
T Consensus 528 ip~------~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~-l~~ip~----------~~~~~L 589 (636)
T 4eco_A 528 FPT------QPLNSSTLKGFGIRNQRDAQGNRTLREWP-EGITLCPSLTQLQIGSND-IRKVNE----------KITPNI 589 (636)
T ss_dssp CCC------GGGGCSSCCEEECCSCBCTTCCBCCCCCC-TTGGGCSSCCEEECCSSC-CCBCCS----------CCCTTC
T ss_pred cCh------hhhcCCCCCEEECCCCcccccCcccccCh-HHHhcCCCCCEEECCCCc-CCccCH----------hHhCcC
Confidence 542 23468899999996532 3343333 456789999999999997 455522 134899
Q ss_pred CccccccccccccccCC-CC------ccCCCCcceEEEecCCCCc
Q 037851 1003 TILKLSSLPELRAFYPG-IH------TLECPILTKLEVSFCHKLE 1040 (1053)
Q Consensus 1003 ~~L~l~~c~~L~~l~~~-~~------~~~~~sL~~L~I~~Cp~L~ 1040 (1053)
+.|+|++|+- .++... .. ...+...+..+|.+||.|.
T Consensus 590 ~~L~Ls~N~l-~~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~~L~ 633 (636)
T 4eco_A 590 SVLDIKDNPN-ISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALD 633 (636)
T ss_dssp CEEECCSCTT-CEEECTTTHHHHHTTCCEEECCTTSEEESCGGGC
T ss_pred CEEECcCCCC-ccccHHhcchhhhcccceeecCCccccCCCcccc
Confidence 9999999863 333211 00 0012234566899999876
No 18
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.93 E-value=8.5e-25 Score=273.79 Aligned_cols=459 Identities=19% Similarity=0.193 Sum_probs=301.1
Q ss_pred cceEEeeccCCCCCCCCCcccccCCCceeEEeecCccccCC-CcccccCccCcEEEcCCcccCC--ccc--cCCCCCCcE
Q 037851 503 CSRISLYDNNINSPLKIPDNIFIGTPKLKVLDFTRMRLLSL-PSSIHLLTDLRTLCLDGCELED--IRV--IGELKDLEI 577 (1053)
Q Consensus 503 ~~~l~l~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~l-p~~i~~l~~Lr~L~L~~~~~~~--~~~--i~~l~~L~~ 577 (1053)
.+.+.+..+.... .+++..|.++++|++|++++|.+..+ |..+.++.+|++|+|++|.+.. +.. ++++++|++
T Consensus 50 L~~LdLs~n~~~~--~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~ 127 (844)
T 3j0a_A 50 LQLLELGSQYTPL--TIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTR 127 (844)
T ss_dssp CSEEEECTTCCCC--EECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCE
T ss_pred CeEEeCCCCCCcc--ccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCE
Confidence 6777887664322 36667789999999999999999876 8899999999999999999876 444 999999999
Q ss_pred EEccCCCCccc--chhhhccCCCCeeeccCcccccccCcchhcCC--ccCceeecccccccccccCCcccccCCChhhhc
Q 037851 578 LSLQGSKIEQL--PREIGQLTQLKLLDLSNCSKLKVIAPNVLSNL--SQLEELYMANCSIEWEHLGPGIERSNASLDELK 653 (1053)
Q Consensus 578 L~l~~~~l~~l--p~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~ 653 (1053)
|++++|.+..+ +..++++++|++|++++ +.+....+..++.+ ++|+.|++++|.+.. .....+.
T Consensus 128 L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~-N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~-----------~~~~~~~ 195 (844)
T 3j0a_A 128 LDLSKNQIRSLYLHPSFGKLNSLKSIDFSS-NQIFLVCEHELEPLQGKTLSFFSLAANSLYS-----------RVSVDWG 195 (844)
T ss_dssp EEEESCCCCCCCCCGGGGTCSSCCEEEEES-SCCCCCCSGGGHHHHHCSSCCCEECCSBSCC-----------CCCCCCC
T ss_pred EECCCCcccccccchhHhhCCCCCEEECCC-CcCCeeCHHHcccccCCccceEECCCCcccc-----------ccccchh
Confidence 99999999865 35799999999999999 46766666667777 899999999998731 1222222
Q ss_pred CCC------CCCeEEEEeccCC-CCCCccc----cccCceEEEEEc---cc----------CCCCC--cccccceeeecc
Q 037851 654 NLS------RLTSLEINILDAG-ILPSGFF----SRKLKRYRIVVG---FQ----------WAPFD--KYKTRRTLKLKL 707 (1053)
Q Consensus 654 ~l~------~L~~L~i~~~~~~-~~~~~~~----~~~L~~l~l~~~---~~----------~~~~~--~~~~l~~l~l~~ 707 (1053)
.+. +|+.|+++.+... ..+..+. ...+..+.+... .. ...+. ....++.|++..
T Consensus 196 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~ 275 (844)
T 3j0a_A 196 KCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSH 275 (844)
T ss_dssp SSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTT
T ss_pred hcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCC
Confidence 222 4888888876432 2222221 134444443210 00 00111 135678888877
Q ss_pred CCccccc-cc-cccCccceeeccccCCcccccccccccccccccEEEeecCCCceeecCCcccccCcCCccceeeccccc
Q 037851 708 NSRICLE-EW-RGMKNVEYLRLDELPGLTNVLHDLDGEGFAELKHLNVKNNSNFLCIVDPLQVRCGAFPMLESLVLQNLI 785 (1053)
Q Consensus 708 ~~~~~~~-~~-~~l~~L~~L~L~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~p~L~~L~l~~~~ 785 (1053)
+.....+ .. ..+++|+.|+|.++.-.......+ ..+++|+.|++++|. +..+ .......+++|+.|+++++
T Consensus 276 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~--~~l~~L~~L~Ls~N~-l~~~---~~~~~~~l~~L~~L~L~~N- 348 (844)
T 3j0a_A 276 GFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAF--YGLDNLQVLNLSYNL-LGEL---YSSNFYGLPKVAYIDLQKN- 348 (844)
T ss_dssp CCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTT--TTCSSCCEEEEESCC-CSCC---CSCSCSSCTTCCEEECCSC-
T ss_pred CcccccChhhhhcCCCCCEEECCCCcCCCCChHHh--cCCCCCCEEECCCCC-CCcc---CHHHhcCCCCCCEEECCCC-
Confidence 6554433 22 278899999998865332211222 578899999999885 2222 2223567889999999885
Q ss_pred ccccccccccCccccCCccEEeEccCCCccccCCchhhhccCCccEEEecccchhhhHhhcCcc---------------c
Q 037851 786 NLERICHGQLRAESFCNLKTIKVGSCHKLKNLFSFSIAKFLPQLKTIEVTECKIVEEIFVSSNE---------------E 850 (1053)
Q Consensus 786 ~L~~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~---------------~ 850 (1053)
.+..+.... ...+++|+.|+++++. ++.++ .+++|+.|.+++|... .++..... .
T Consensus 349 ~i~~~~~~~--~~~l~~L~~L~Ls~N~-l~~i~------~~~~L~~L~l~~N~l~-~l~~~~~~l~~L~ls~N~l~~l~~ 418 (844)
T 3j0a_A 349 HIAIIQDQT--FKFLEKLQTLDLRDNA-LTTIH------FIPSIPDIFLSGNKLV-TLPKINLTANLIHLSENRLENLDI 418 (844)
T ss_dssp CCCCCCSSC--SCSCCCCCEEEEETCC-SCCCS------SCCSCSEEEEESCCCC-CCCCCCTTCCEEECCSCCCCSSTT
T ss_pred CCCccChhh--hcCCCCCCEEECCCCC-CCccc------CCCCcchhccCCCCcc-cccccccccceeecccCccccCch
Confidence 455553322 2568899999998874 55543 2778888888887432 22210000 0
Q ss_pred ccccccccccceEecCCCcccccccccccccccccchhhhhHhhhccccCCCCccccccccccccceEeecccccceecc
Q 037851 851 AIGEIALAQVRSLILRTLPLLASFSAFVKTTSTVEAKHNEIILENESQLHTPSSLFNVKLVLPNLEVLEVRDLNVAKIWH 930 (1053)
Q Consensus 851 ~~~~~~~~~L~~L~l~~c~~L~si~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 930 (1053)
......+++|+.|+++++.- ..++. ......+++|++|++++|.+...|.
T Consensus 419 ~~~~~~l~~L~~L~Ls~N~l-~~~~~-----------------------------~~~~~~~~~L~~L~Ls~N~l~~~~~ 468 (844)
T 3j0a_A 419 LYFLLRVPHLQILILNQNRF-SSCSG-----------------------------DQTPSENPSLEQLFLGENMLQLAWE 468 (844)
T ss_dssp HHHHTTCTTCCEEEEESCCC-CCCCS-----------------------------SSSSCSCTTCCBCEEESCCCSSSCC
T ss_pred hhhhhcCCccceeeCCCCcc-ccccc-----------------------------ccccccCCccccccCCCCccccccc
Confidence 00001244445555444421 11100 0011227899999999998877665
Q ss_pred CCccccccccCCcccEEEEecCccccccccchhHhhhccCcEEEEecccccceeecccCccccCCcccccccCccccccc
Q 037851 931 NQFSAAMSCNVQNLTRLVVLDCHKLRYVFSYSTAKRLGQLKHLVISRCPLLEEIVGKEGGVEADPSFVFPQLTILKLSSL 1010 (1053)
Q Consensus 931 ~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~l~~l~sL~~L~i~~c~~l~~i~~~~~~~~~~~~~~~p~L~~L~l~~c 1010 (1053)
.......+..+++|+.|+++++ +++.+++ ..+.++++|+.|++++|. ++.+... ...++|+.|+++++
T Consensus 469 ~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~l~~~---------~~~~~L~~L~Ls~N 536 (844)
T 3j0a_A 469 TELCWDVFEGLSHLQVLYLNHN-YLNSLPP-GVFSHLTALRGLSLNSNR-LTVLSHN---------DLPANLEILDISRN 536 (844)
T ss_dssp SCCCSSCSSCBCCEECCCCCHH-HHTTCCT-TSSSSCCSCSEEEEESCC-CSSCCCC---------CCCSCCCEEEEEEE
T ss_pred cccchhhhcCcccccEEECCCC-cccccCh-hHccchhhhheeECCCCC-CCccChh---------hhhccccEEECCCC
Confidence 4444344567788999999985 7877744 456889999999999996 6554221 11278999999886
Q ss_pred cccccccCCCCccCCCCcceEEEecCCCC
Q 037851 1011 PELRAFYPGIHTLECPILTKLEVSFCHKL 1039 (1053)
Q Consensus 1011 ~~L~~l~~~~~~~~~~sL~~L~I~~Cp~L 1039 (1053)
+|+.++.. .+++|+.|++.++|-.
T Consensus 537 -~l~~~~~~----~~~~L~~l~l~~Np~~ 560 (844)
T 3j0a_A 537 -QLLAPNPD----VFVSLSVLDITHNKFI 560 (844)
T ss_dssp -CCCCCCSC----CCSSCCEEEEEEECCC
T ss_pred -cCCCCChh----HhCCcCEEEecCCCcc
Confidence 56655543 2468999999986543
No 19
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.93 E-value=8e-25 Score=261.86 Aligned_cols=449 Identities=18% Similarity=0.205 Sum_probs=282.5
Q ss_pred CCCcccccCCCceeEEeecCccccCC-CcccccCccCcEEEcCCcccCC--ccccCCCCCCcEEEccCCCCcccchh-hh
Q 037851 518 KIPDNIFIGTPKLKVLDFTRMRLLSL-PSSIHLLTDLRTLCLDGCELED--IRVIGELKDLEILSLQGSKIEQLPRE-IG 593 (1053)
Q Consensus 518 ~~~~~~~~~~~~Lr~L~l~~~~~~~l-p~~i~~l~~Lr~L~L~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~lp~~-i~ 593 (1053)
.+|..++ +.|++|++++|.+..+ |..+..+++|++|++++|.+.. +..++.+++|++|++++|.+..+|.. ++
T Consensus 19 ~ip~~~~---~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 95 (549)
T 2z81_A 19 SIPSGLT---AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFG 95 (549)
T ss_dssp SCCSCCC---TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHT
T ss_pred cccccCC---CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhc
Confidence 4777653 7899999999999876 5679999999999999999887 46799999999999999999988765 99
Q ss_pred ccCCCCeeeccCccccccc-CcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCCeEEEEeccCCC-C
Q 037851 594 QLTQLKLLDLSNCSKLKVI-APNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLEINILDAGI-L 671 (1053)
Q Consensus 594 ~L~~L~~L~l~~~~~l~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~-~ 671 (1053)
++++|++|++++| .+..+ .+..++++++|++|++++|... .......+.++++|+.|+++++.... .
T Consensus 96 ~l~~L~~L~Ls~n-~l~~~~~~~~~~~l~~L~~L~L~~n~~~----------~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 164 (549)
T 2z81_A 96 PLSSLKYLNLMGN-PYQTLGVTSLFPNLTNLQTLRIGNVETF----------SEIRRIDFAGLTSLNELEIKALSLRNYQ 164 (549)
T ss_dssp TCTTCCEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSC----------CEECTTTTTTCCEEEEEEEEETTCCEEC
T ss_pred cCCCCcEEECCCC-cccccchhhhhhccCCccEEECCCCccc----------cccCHhhhhcccccCeeeccCCcccccC
Confidence 9999999999995 56643 2345899999999999998731 11223467889999999999886543 2
Q ss_pred CCccccccCceEEEEEcccCCCCCcccccceeeeccCCcccccccc--ccCccceeeccccCCccccc-ccccccccccc
Q 037851 672 PSGFFSRKLKRYRIVVGFQWAPFDKYKTRRTLKLKLNSRICLEEWR--GMKNVEYLRLDELPGLTNVL-HDLDGEGFAEL 748 (1053)
Q Consensus 672 ~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~--~l~~L~~L~L~~~~~~~~~~-~~l~~~~l~~L 748 (1053)
+..+ .....++.+.+..+.....+.+. .+++|++|+++++.-..... +......+++|
T Consensus 165 ~~~l-------------------~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L 225 (549)
T 2z81_A 165 SQSL-------------------KSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPM 225 (549)
T ss_dssp TTTT-------------------TTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCC
T ss_pred hhhh-------------------hccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcc
Confidence 2222 22334455555555444455544 68999999999865332111 11112457899
Q ss_pred cEEEeecCCCceee-cCCcccccCcCCccceeeccccccccccccc----ccCccccCCccEEeEccCCCccccC---C-
Q 037851 749 KHLNVKNNSNFLCI-VDPLQVRCGAFPMLESLVLQNLINLERICHG----QLRAESFCNLKTIKVGSCHKLKNLF---S- 819 (1053)
Q Consensus 749 ~~L~l~~~~~l~~i-~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~----~~~~~~~~~L~~L~i~~c~~l~~l~---~- 819 (1053)
+.|++.++. +... ..........+++|+.|.+.++.. ..+... ......+++|+.|.+.++. +.... .
T Consensus 226 ~~L~l~~n~-l~~~~~~~l~~~~~~~~~L~~l~l~~~~~-~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-i~~~~~~~~l 302 (549)
T 2z81_A 226 KKLAFRGSV-LTDESFNELLKLLRYILELSEVEFDDCTL-NGLGDFNPSESDVVSELGKVETVTIRRLH-IPQFYLFYDL 302 (549)
T ss_dssp CEEEEESCE-EEHHHHHHHHGGGGGCTTCCEEEEESCEE-ECCSCCCCCTTTCCCCCTTCCEEEEESCB-CSCGGGSCCC
T ss_pred cceeccccc-cchhHHHHHHHHhhhhccccccccccccc-cccccccccchhhhhhhcccccccccccc-cchhhhcccc
Confidence 999999874 2110 011111135678999999988652 221100 0112467899999998873 22110 0
Q ss_pred chhhhccCCccEEEecccchhhhHhhcCcccccccccccccceEecCCCccccccccc---ccccccccchhhhhHhhhc
Q 037851 820 FSIAKFLPQLKTIEVTECKIVEEIFVSSNEEAIGEIALAQVRSLILRTLPLLASFSAF---VKTTSTVEAKHNEIILENE 896 (1053)
Q Consensus 820 ~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~si~~~---~~~~~~l~~~~~~~~~~~~ 896 (1053)
......+++|+.|++++|. +..++.... ..+++|++|+++++.-...++.. ......++.+. ...+.
T Consensus 303 ~~~~~~~~~L~~L~l~~n~-l~~ip~~~~------~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~---Ls~N~ 372 (549)
T 2z81_A 303 STVYSLLEKVKRITVENSK-VFLVPCSFS------QHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLV---LSQNH 372 (549)
T ss_dssp CHHHHHSTTCCEEEEESSC-CCCCCHHHH------HHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEE---CTTSC
T ss_pred hhhhhhcccceEEEeccCc-cccCCHHHH------hcCccccEEEccCCccccccccchhhhhccccCcEEE---ccCCc
Confidence 0113456899999999985 334332110 13899999999999754433211 00001111110 00000
Q ss_pred cccCCCCc-cccccccccccceEeecccccceeccCCccccccccCCcccEEEEecCccccccccchhHhhhccCcEEEE
Q 037851 897 SQLHTPSS-LFNVKLVLPNLEVLEVRDLNVAKIWHNQFSAAMSCNVQNLTRLVVLDCHKLRYVFSYSTAKRLGQLKHLVI 975 (1053)
Q Consensus 897 ~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~l~~l~sL~~L~i 975 (1053)
..... .......+++|++|++++|.+..++. ....+++|+.|++++|. ++.++. . -.++|+.|++
T Consensus 373 ---l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~------~~~~~~~L~~L~Ls~N~-l~~l~~-~---~~~~L~~L~L 438 (549)
T 2z81_A 373 ---LRSMQKTGEILLTLKNLTSLDISRNTFHPMPD------SCQWPEKMRFLNLSSTG-IRVVKT-C---IPQTLEVLDV 438 (549)
T ss_dssp ---CCCHHHHHHHGGGCTTCCEEECTTCCCCCCCS------CCCCCTTCCEEECTTSC-CSCCCT-T---SCTTCSEEEC
T ss_pred ---ccccccchhhhhcCCCCCEEECCCCCCccCCh------hhcccccccEEECCCCC-cccccc-h---hcCCceEEEC
Confidence 00000 00012236677777777776665432 12345677777777753 444421 1 1257777777
Q ss_pred ecccccceeecccCccccCCcccccccCccccccccccccccCCCCccCCCCcceEEEecCCCCcccc
Q 037851 976 SRCPLLEEIVGKEGGVEADPSFVFPQLTILKLSSLPELRAFYPGIHTLECPILTKLEVSFCHKLESFS 1043 (1053)
Q Consensus 976 ~~c~~l~~i~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~l~~~~~~~~~~sL~~L~I~~Cp~L~~l~ 1043 (1053)
++|. ++.+. ..+++|++|++++| +++.+|.. ..+++|++|++++| +++.++
T Consensus 439 s~N~-l~~~~-----------~~l~~L~~L~Ls~N-~l~~ip~~---~~l~~L~~L~Ls~N-~l~~~~ 489 (549)
T 2z81_A 439 SNNN-LDSFS-----------LFLPRLQELYISRN-KLKTLPDA---SLFPVLLVMKISRN-QLKSVP 489 (549)
T ss_dssp CSSC-CSCCC-----------CCCTTCCEEECCSS-CCSSCCCG---GGCTTCCEEECCSS-CCCCCC
T ss_pred CCCC-hhhhc-----------ccCChhcEEECCCC-ccCcCCCc---ccCccCCEEecCCC-ccCCcC
Confidence 7774 43331 24789999999987 67888863 24699999999886 355444
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.93 E-value=6.1e-25 Score=260.77 Aligned_cols=448 Identities=16% Similarity=0.148 Sum_probs=269.6
Q ss_pred ceEEeeccCCCCCCCCCcccccCCCceeEEeecCccccCCC-cccccCccCcEEEcCCcccCC--ccccCCCCCCcEEEc
Q 037851 504 SRISLYDNNINSPLKIPDNIFIGTPKLKVLDFTRMRLLSLP-SSIHLLTDLRTLCLDGCELED--IRVIGELKDLEILSL 580 (1053)
Q Consensus 504 ~~l~l~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp-~~i~~l~~Lr~L~L~~~~~~~--~~~i~~l~~L~~L~l 580 (1053)
+.+.+..+... .+|..++ ++|++|++++|.+..+| ..+..+++|++|++++|.+.. +..++++++|++|++
T Consensus 3 ~~l~ls~n~l~---~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 76 (520)
T 2z7x_B 3 FLVDRSKNGLI---HVPKDLS---QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDL 76 (520)
T ss_dssp CEEECTTSCCS---SCCCSCC---TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEEC
T ss_pred ceEecCCCCcc---ccccccc---ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEec
Confidence 34555555544 3776654 78999999999998876 578999999999999999887 468999999999999
Q ss_pred cCCCCcccchhhhccCCCCeeeccCccccccc-CcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCC-
Q 037851 581 QGSKIEQLPREIGQLTQLKLLDLSNCSKLKVI-APNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRL- 658 (1053)
Q Consensus 581 ~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L- 658 (1053)
++|.+..+|.. .+++|++|++++| .+..+ .|..++++++|++|++++|.+. . ..+..+++|
T Consensus 77 s~N~l~~lp~~--~l~~L~~L~L~~N-~l~~~~~p~~~~~l~~L~~L~L~~n~l~-----------~---~~~~~l~~L~ 139 (520)
T 2z7x_B 77 SHNKLVKISCH--PTVNLKHLDLSFN-AFDALPICKEFGNMSQLKFLGLSTTHLE-----------K---SSVLPIAHLN 139 (520)
T ss_dssp CSSCCCEEECC--CCCCCSEEECCSS-CCSSCCCCGGGGGCTTCCEEEEEESSCC-----------G---GGGGGGTTSC
T ss_pred CCCceeecCcc--ccCCccEEeccCC-ccccccchhhhccCCcceEEEecCcccc-----------h---hhccccccce
Confidence 99999999877 8999999999995 56553 2456899999999999998762 1 234455556
Q ss_pred -CeEEEEeccC---CCCCCccccccCceEEEEEccc--C-----CCCCcccccceeeeccCC--------cccccccccc
Q 037851 659 -TSLEINILDA---GILPSGFFSRKLKRYRIVVGFQ--W-----APFDKYKTRRTLKLKLNS--------RICLEEWRGM 719 (1053)
Q Consensus 659 -~~L~i~~~~~---~~~~~~~~~~~L~~l~l~~~~~--~-----~~~~~~~~l~~l~l~~~~--------~~~~~~~~~l 719 (1053)
+.|+++.+.. ...|..+..-..+.+.+..... . ........++.+++..+. ...++.+..+
T Consensus 140 L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l 219 (520)
T 2z7x_B 140 ISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTN 219 (520)
T ss_dssp EEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGC
T ss_pred eeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccc
Confidence 8999988765 2233333111112333321110 0 011233445555555432 1112333356
Q ss_pred CccceeeccccCCccccccccc-ccccccccEEEeecCCCceeecCCccc-ccCcCCccceeecccccccccccccccC-
Q 037851 720 KNVEYLRLDELPGLTNVLHDLD-GEGFAELKHLNVKNNSNFLCIVDPLQV-RCGAFPMLESLVLQNLINLERICHGQLR- 796 (1053)
Q Consensus 720 ~~L~~L~L~~~~~~~~~~~~l~-~~~l~~L~~L~l~~~~~l~~i~~~~~~-~~~~~p~L~~L~l~~~~~L~~~~~~~~~- 796 (1053)
++|+.|++.++.........+. ....++|+.|++++|.-...++..... ..+.+++|+.+++.+.. + .++...+.
T Consensus 220 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~-~-~~p~~~~~~ 297 (520)
T 2z7x_B 220 PKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDV-F-GFPQSYIYE 297 (520)
T ss_dssp TTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECC-C-CSCTHHHHH
T ss_pred cchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccc-e-ecchhhhhc
Confidence 6777777765432211111110 012347777777776411011111100 01456666666666532 1 22100000
Q ss_pred ccccCCccEEeEccCCCccccCCchhhhccCCccEEEecccchhhhHhhcCcccccccccccccceEecCCCcccccccc
Q 037851 797 AESFCNLKTIKVGSCHKLKNLFSFSIAKFLPQLKTIEVTECKIVEEIFVSSNEEAIGEIALAQVRSLILRTLPLLASFSA 876 (1053)
Q Consensus 797 ~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~si~~ 876 (1053)
...-++|+.|++++|. +...+ ....+++|++|++++|......+.. ...+++|++|++++|.- ..++.
T Consensus 298 ~~~~~~L~~L~l~~n~-l~~~~---~~~~l~~L~~L~Ls~n~l~~~~~~~-------~~~l~~L~~L~L~~N~l-~~l~~ 365 (520)
T 2z7x_B 298 IFSNMNIKNFTVSGTR-MVHML---CPSKISPFLHLDFSNNLLTDTVFEN-------CGHLTELETLILQMNQL-KELSK 365 (520)
T ss_dssp HHHTCCCSEEEEESSC-CCCCC---CCSSCCCCCEEECCSSCCCTTTTTT-------CCCCSSCCEEECCSSCC-CBHHH
T ss_pred ccccCceeEEEcCCCc-ccccc---chhhCCcccEEEeECCccChhhhhh-------hccCCCCCEEEccCCcc-Ccccc
Confidence 0011458888887774 33332 1256788888888887544333321 12477888888887742 22111
Q ss_pred cccccccccchhhhhHhhhccccCCCCccccccccccccceEeecccccce-eccCCccccccccCCcccEEEEecCccc
Q 037851 877 FVKTTSTVEAKHNEIILENESQLHTPSSLFNVKLVLPNLEVLEVRDLNVAK-IWHNQFSAAMSCNVQNLTRLVVLDCHKL 955 (1053)
Q Consensus 877 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~~l~~L~~L~i~~c~~l 955 (1053)
.. .....+++|++|++++|.+.. ++... ...+++|+.|++++|. +
T Consensus 366 ~~----------------------------~~~~~l~~L~~L~Ls~N~l~~~l~~~~-----~~~l~~L~~L~Ls~N~-l 411 (520)
T 2z7x_B 366 IA----------------------------EMTTQMKSLQQLDISQNSVSYDEKKGD-----CSWTKSLLSLNMSSNI-L 411 (520)
T ss_dssp HH----------------------------HHHTTCTTCCEEECCSSCCBCCGGGCS-----CCCCTTCCEEECCSSC-C
T ss_pred ch----------------------------HHHhhCCCCCEEECCCCcCCcccccch-----hccCccCCEEECcCCC-C
Confidence 00 001127889999999988776 44322 2457889999998864 4
Q ss_pred cccccchhHhhh-ccCcEEEEecccccceeecccCccccCCcccccccCccccccccccccccCCCCccCCCCcceEEEe
Q 037851 956 RYVFSYSTAKRL-GQLKHLVISRCPLLEEIVGKEGGVEADPSFVFPQLTILKLSSLPELRAFYPGIHTLECPILTKLEVS 1034 (1053)
Q Consensus 956 ~~l~~~~~l~~l-~sL~~L~i~~c~~l~~i~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~l~~~~~~~~~~sL~~L~I~ 1034 (1053)
+...+. .+ ++|+.|++++|. ++.++. ....+++|++|++++| .++.+|... ...+++|++|+++
T Consensus 412 ~~~~~~----~l~~~L~~L~Ls~N~-l~~ip~--------~~~~l~~L~~L~L~~N-~l~~l~~~~-~~~l~~L~~L~l~ 476 (520)
T 2z7x_B 412 TDTIFR----CLPPRIKVLDLHSNK-IKSIPK--------QVVKLEALQELNVASN-QLKSVPDGI-FDRLTSLQKIWLH 476 (520)
T ss_dssp CGGGGG----SCCTTCCEEECCSSC-CCCCCG--------GGGGCTTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECC
T ss_pred Ccchhh----hhcccCCEEECCCCc-ccccch--------hhhcCCCCCEEECCCC-cCCccCHHH-hccCCcccEEECc
Confidence 333221 22 689999999985 555432 1235788999999887 677888762 2246889999998
Q ss_pred cCC
Q 037851 1035 FCH 1037 (1053)
Q Consensus 1035 ~Cp 1037 (1053)
++|
T Consensus 477 ~N~ 479 (520)
T 2z7x_B 477 TNP 479 (520)
T ss_dssp SSC
T ss_pred CCC
Confidence 876
No 21
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.93 E-value=1e-24 Score=262.39 Aligned_cols=437 Identities=19% Similarity=0.159 Sum_probs=296.6
Q ss_pred cceEEeeccCCCCCCCCCcccccCCCceeEEeecCccccCCC-cccccCccCcEEEcCCcccCCc--cccCCCCCCcEEE
Q 037851 503 CSRISLYDNNINSPLKIPDNIFIGTPKLKVLDFTRMRLLSLP-SSIHLLTDLRTLCLDGCELEDI--RVIGELKDLEILS 579 (1053)
Q Consensus 503 ~~~l~l~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp-~~i~~l~~Lr~L~L~~~~~~~~--~~i~~l~~L~~L~ 579 (1053)
.+.+.+..+.... +++..|.++++|++|++++|.+..+| ..+..+++|++|++++|.+... ..++++++|++|+
T Consensus 54 L~~L~Ls~n~i~~---i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 130 (570)
T 2z63_A 54 LQVLDLSRCEIQT---IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130 (570)
T ss_dssp CCEEECTTCCCCE---ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEE
T ss_pred ceEEECCCCcCCc---cCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEe
Confidence 6777777765543 66777899999999999999998775 6799999999999999998884 3599999999999
Q ss_pred ccCCCCcc--cchhhhccCCCCeeeccCcccccccCcchhcCCccC----ceeecccccccccccCCccc----------
Q 037851 580 LQGSKIEQ--LPREIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQL----EELYMANCSIEWEHLGPGIE---------- 643 (1053)
Q Consensus 580 l~~~~l~~--lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~l~~L----~~L~l~~~~~~~~~~~~~~~---------- 643 (1053)
+++|.+.. +|..++++++|++|++++ +.+..+++..++++++| +.|++++|.+.....+....
T Consensus 131 L~~n~l~~~~lp~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~ 209 (570)
T 2z63_A 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSS-NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRN 209 (570)
T ss_dssp CCSSCCCCCCCCGGGGGCTTCCEEECTT-SCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEES
T ss_pred cCCCccceecChhhhcccCCCCEEeCcC-CccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEeccc
Confidence 99999885 799999999999999999 46788877778888888 88999988764221110000
Q ss_pred ---ccCCChhhhcCCCCCCeEEEEeccCC------CCCCc----cccccCceEEEEEcc-----cCCCCCcccccceeee
Q 037851 644 ---RSNASLDELKNLSRLTSLEINILDAG------ILPSG----FFSRKLKRYRIVVGF-----QWAPFDKYKTRRTLKL 705 (1053)
Q Consensus 644 ---~~~~~~~~L~~l~~L~~L~i~~~~~~------~~~~~----~~~~~L~~l~l~~~~-----~~~~~~~~~~l~~l~l 705 (1053)
........++.+.+++.+.+...... .++.. ...-.++.+.+.... ....+.....++.+.+
T Consensus 210 n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l 289 (570)
T 2z63_A 210 NFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSL 289 (570)
T ss_dssp CCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEE
T ss_pred ccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEe
Confidence 00001112333444443333221110 11111 111245667665431 2234456678888888
Q ss_pred ccCCcccccccc-ccCccceeeccccCCcccccccccccccccccEEEeecCCCceeecCCcccccCcCCccceeecccc
Q 037851 706 KLNSRICLEEWR-GMKNVEYLRLDELPGLTNVLHDLDGEGFAELKHLNVKNNSNFLCIVDPLQVRCGAFPMLESLVLQNL 784 (1053)
Q Consensus 706 ~~~~~~~~~~~~-~l~~L~~L~L~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~p~L~~L~l~~~ 784 (1053)
..+....+|.+. .+ +|++|++.++... .+....+++|+.|++.++...... ....+|+|+.|+++++
T Consensus 290 ~~~~l~~l~~~~~~~-~L~~L~l~~n~~~-----~l~~~~l~~L~~L~l~~n~~~~~~------~~~~~~~L~~L~l~~n 357 (570)
T 2z63_A 290 VSVTIERVKDFSYNF-GWQHLELVNCKFG-----QFPTLKLKSLKRLTFTSNKGGNAF------SEVDLPSLEFLDLSRN 357 (570)
T ss_dssp ESCEECSCCBCCSCC-CCSEEEEESCBCS-----SCCBCBCSSCCEEEEESCBSCCBC------CCCBCTTCCEEECCSS
T ss_pred cCccchhhhhhhccC-CccEEeeccCccc-----ccCcccccccCEEeCcCCcccccc------ccccCCCCCEEeCcCC
Confidence 887766777776 55 9999999987543 222357899999999988632211 1257899999999985
Q ss_pred cccccccccccCccccCCccEEeEccCCCccccCCchhhhccCCccEEEecccchhhhHhhcCcccccccccccccceEe
Q 037851 785 INLERICHGQLRAESFCNLKTIKVGSCHKLKNLFSFSIAKFLPQLKTIEVTECKIVEEIFVSSNEEAIGEIALAQVRSLI 864 (1053)
Q Consensus 785 ~~L~~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~ 864 (1053)
. +............+++|+.|++++|. +..+++. +..+++|++|++++|......+.. ....+++|++|+
T Consensus 358 ~-l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~------~~~~l~~L~~L~ 427 (570)
T 2z63_A 358 G-LSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSN--FLGLEQLEHLDFQHSNLKQMSEFS------VFLSLRNLIYLD 427 (570)
T ss_dssp C-CBEEEEEEHHHHTCSCCCEEECCSCS-EEEEEEE--EETCTTCCEEECTTSEEESCTTSC------TTTTCTTCCEEE
T ss_pred c-cCccccccccccccCccCEEECCCCc-ccccccc--ccccCCCCEEEccCCccccccchh------hhhcCCCCCEEe
Confidence 3 43331111223468999999999985 6666542 678999999999998644322211 122478999999
Q ss_pred cCCCcccccccccccccccccchhhhhHhhhccccCCCCccccccccccccceEeecccccce--eccCCccccccccCC
Q 037851 865 LRTLPLLASFSAFVKTTSTVEAKHNEIILENESQLHTPSSLFNVKLVLPNLEVLEVRDLNVAK--IWHNQFSAAMSCNVQ 942 (1053)
Q Consensus 865 l~~c~~L~si~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~~l~ 942 (1053)
+.+|......+.. +..+++|++|++++|.+.+ ++ ..+..++
T Consensus 428 l~~n~l~~~~~~~-------------------------------~~~l~~L~~L~l~~n~l~~~~~p------~~~~~l~ 470 (570)
T 2z63_A 428 ISHTHTRVAFNGI-------------------------------FNGLSSLEVLKMAGNSFQENFLP------DIFTELR 470 (570)
T ss_dssp CTTSCCEECCTTT-------------------------------TTTCTTCCEEECTTCEEGGGEEC------SCCTTCT
T ss_pred CcCCcccccchhh-------------------------------hhcCCcCcEEECcCCcCccccch------hhhhccc
Confidence 9998644332211 1127899999999987752 22 2235688
Q ss_pred cccEEEEecCccccccccchhHhhhccCcEEEEecccccceeecccCccccCCcccccccCccccccccc
Q 037851 943 NLTRLVVLDCHKLRYVFSYSTAKRLGQLKHLVISRCPLLEEIVGKEGGVEADPSFVFPQLTILKLSSLPE 1012 (1053)
Q Consensus 943 ~L~~L~i~~c~~l~~l~~~~~l~~l~sL~~L~i~~c~~l~~i~~~~~~~~~~~~~~~p~L~~L~l~~c~~ 1012 (1053)
+|+.|++++| +++.+.+ ..+..+++|+.|++++|. ++.+. ......+++|+.|++++++-
T Consensus 471 ~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~-------~~~~~~l~~L~~L~l~~N~~ 530 (570)
T 2z63_A 471 NLTFLDLSQC-QLEQLSP-TAFNSLSSLQVLNMASNQ-LKSVP-------DGIFDRLTSLQKIWLHTNPW 530 (570)
T ss_dssp TCCEEECTTS-CCCEECT-TTTTTCTTCCEEECCSSC-CSCCC-------TTTTTTCTTCCEEECCSSCB
T ss_pred CCCEEECCCC-ccccCCh-hhhhcccCCCEEeCCCCc-CCCCC-------HHHhhcccCCcEEEecCCcc
Confidence 8999999986 4666533 456788999999999985 55442 12234578899999988763
No 22
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.92 E-value=9.1e-25 Score=264.05 Aligned_cols=355 Identities=16% Similarity=0.139 Sum_probs=238.0
Q ss_pred CCCcccccCccCcEEEcCCcccCC-------------------ccccC--CCCCCcEEEccCCCCc-ccchhhhccCCCC
Q 037851 542 SLPSSIHLLTDLRTLCLDGCELED-------------------IRVIG--ELKDLEILSLQGSKIE-QLPREIGQLTQLK 599 (1053)
Q Consensus 542 ~lp~~i~~l~~Lr~L~L~~~~~~~-------------------~~~i~--~l~~L~~L~l~~~~l~-~lp~~i~~L~~L~ 599 (1053)
.+|+.++++++|++|+|++|.++. |..++ ++++|++|++++|.+. .+|..++++++|+
T Consensus 197 ~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 276 (636)
T 4eco_A 197 FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ 276 (636)
T ss_dssp EECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCC
T ss_pred cCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCC
Confidence 478889999999999999999876 57788 9999999999999865 8899999999999
Q ss_pred eeeccCcccccc--cCcchhcCC------ccCceeecccccccccccCCcccccCCChh--hhcCCCCCCeEEEEeccCC
Q 037851 600 LLDLSNCSKLKV--IAPNVLSNL------SQLEELYMANCSIEWEHLGPGIERSNASLD--ELKNLSRLTSLEINILDAG 669 (1053)
Q Consensus 600 ~L~l~~~~~l~~--~~~~~l~~l------~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~--~L~~l~~L~~L~i~~~~~~ 669 (1053)
+|++++|..+.. + |..++++ ++|++|++++|.+ . ..+. .++++++|+.|+++.+...
T Consensus 277 ~L~Ls~n~~l~~~~l-p~~~~~L~~~~~l~~L~~L~L~~n~l-----------~-~ip~~~~l~~l~~L~~L~L~~N~l~ 343 (636)
T 4eco_A 277 LINVACNRGISGEQL-KDDWQALADAPVGEKIQIIYIGYNNL-----------K-TFPVETSLQKMKKLGMLECLYNQLE 343 (636)
T ss_dssp EEECTTCTTSCHHHH-HHHHHHHHHSGGGGTCCEEECCSSCC-----------S-SCCCHHHHTTCTTCCEEECCSCCCE
T ss_pred EEECcCCCCCccccc-hHHHHhhhccccCCCCCEEECCCCcC-----------C-ccCchhhhccCCCCCEEeCcCCcCc
Confidence 999999643664 5 4457776 9999999999987 2 3444 7889999999999887765
Q ss_pred -CCCCccccccCceEEEEEcccCCCCCcccccceeeeccCCcccccccc-ccCc-cceeeccccCCcccccccccccccc
Q 037851 670 -ILPSGFFSRKLKRYRIVVGFQWAPFDKYKTRRTLKLKLNSRICLEEWR-GMKN-VEYLRLDELPGLTNVLHDLDGEGFA 746 (1053)
Q Consensus 670 -~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~-~l~~-L~~L~L~~~~~~~~~~~~l~~~~l~ 746 (1053)
.+| .+ .....++.|.+..+....+|.+. .+++ |++|+++++.-. .....+....++
T Consensus 344 g~ip-~~-------------------~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~ 402 (636)
T 4eco_A 344 GKLP-AF-------------------GSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVS 402 (636)
T ss_dssp EECC-CC-------------------EEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSS
T ss_pred cchh-hh-------------------CCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccC
Confidence 555 22 12234455556555444555544 6777 999999886533 322223223355
Q ss_pred cccEEEeecCCCceeecCCcc---cccCcCCccceeecccccccccccccccCccccCCccEEeEccCCCccccCCchhh
Q 037851 747 ELKHLNVKNNSNFLCIVDPLQ---VRCGAFPMLESLVLQNLINLERICHGQLRAESFCNLKTIKVGSCHKLKNLFSFSIA 823 (1053)
Q Consensus 747 ~L~~L~l~~~~~l~~i~~~~~---~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~ 823 (1053)
+|+.|++++|.-...++.... .....+++|+.|+++++ .+..++... ...+++|+.|++++|. ++.+|.. ..
T Consensus 403 ~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~--~~~l~~L~~L~Ls~N~-l~~i~~~-~~ 477 (636)
T 4eco_A 403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKEL--FSTGSPLSSINLMGNM-LTEIPKN-SL 477 (636)
T ss_dssp CEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSS-CCCSCCTHH--HHTTCCCSEEECCSSC-CSBCCSS-SS
T ss_pred ccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCC-ccCcCCHHH--HccCCCCCEEECCCCC-CCCcCHH-Hh
Confidence 899999988862211111111 00114568999999884 455443221 1247889999998874 6666542 22
Q ss_pred h-------ccCCccEEEecccchhhhHhhcCcccccccccccccceEecCCCcccccccccccccccccchhhhhHhhhc
Q 037851 824 K-------FLPQLKTIEVTECKIVEEIFVSSNEEAIGEIALAQVRSLILRTLPLLASFSAFVKTTSTVEAKHNEIILENE 896 (1053)
Q Consensus 824 ~-------~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~si~~~~~~~~~l~~~~~~~~~~~~ 896 (1053)
. ++++|+.|++++|..- .++.... ...+++|+.|+++++.- ..+|...
T Consensus 478 ~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~-----~~~l~~L~~L~Ls~N~l-~~ip~~~------------------ 532 (636)
T 4eco_A 478 KDENENFKNTYLLTSIDLRFNKLT-KLSDDFR-----ATTLPYLVGIDLSYNSF-SKFPTQP------------------ 532 (636)
T ss_dssp EETTEECTTGGGCCEEECCSSCCC-BCCGGGS-----TTTCTTCCEEECCSSCC-SSCCCGG------------------
T ss_pred ccccccccccCCccEEECcCCcCC-ccChhhh-----hccCCCcCEEECCCCCC-CCcChhh------------------
Confidence 2 2338999999988543 4432111 01478999999998843 3344321
Q ss_pred cccCCCCccccccccccccceEeeccc------ccceeccCCccccccccCCcccEEEEecCccccccccchhHhhhccC
Q 037851 897 SQLHTPSSLFNVKLVLPNLEVLEVRDL------NVAKIWHNQFSAAMSCNVQNLTRLVVLDCHKLRYVFSYSTAKRLGQL 970 (1053)
Q Consensus 897 ~~~~~~~~~~~~~~~~~~L~~L~l~~~------~~~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~l~~l~sL 970 (1053)
..+++|++|++++| ++....+ ..+..+++|+.|++++|. +..++. .. .++|
T Consensus 533 -------------~~l~~L~~L~Ls~N~~ls~N~l~~~~p-----~~l~~l~~L~~L~Ls~N~-l~~ip~-~~---~~~L 589 (636)
T 4eco_A 533 -------------LNSSTLKGFGIRNQRDAQGNRTLREWP-----EGITLCPSLTQLQIGSND-IRKVNE-KI---TPNI 589 (636)
T ss_dssp -------------GGCSSCCEEECCSCBCTTCCBCCCCCC-----TTGGGCSSCCEEECCSSC-CCBCCS-CC---CTTC
T ss_pred -------------hcCCCCCEEECCCCcccccCcccccCh-----HHHhcCCCCCEEECCCCc-CCccCH-hH---hCcC
Confidence 12889999999654 3333222 223568899999999964 566633 22 2799
Q ss_pred cEEEEeccccccee
Q 037851 971 KHLVISRCPLLEEI 984 (1053)
Q Consensus 971 ~~L~i~~c~~l~~i 984 (1053)
+.|++++|+ +..+
T Consensus 590 ~~L~Ls~N~-l~~~ 602 (636)
T 4eco_A 590 SVLDIKDNP-NISI 602 (636)
T ss_dssp CEEECCSCT-TCEE
T ss_pred CEEECcCCC-Cccc
Confidence 999999998 4444
No 23
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.92 E-value=1.1e-23 Score=257.08 Aligned_cols=128 Identities=26% Similarity=0.422 Sum_probs=93.6
Q ss_pred CcceEEeeccCCCCCCCCCcccccCCCceeEEeecCccccCCCc-ccccCccCcEEEcCCcccCC-c-cccCCCCCCcEE
Q 037851 502 KCSRISLYDNNINSPLKIPDNIFIGTPKLKVLDFTRMRLLSLPS-SIHLLTDLRTLCLDGCELED-I-RVIGELKDLEIL 578 (1053)
Q Consensus 502 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~-~i~~l~~Lr~L~L~~~~~~~-~-~~i~~l~~L~~L 578 (1053)
..+.+.+.+|.+.. +|+..|.++++|++|++++|.+..+|+ +|.++++|++|+|++|+++. + ..|++|.+|++|
T Consensus 53 ~~~~LdLs~N~i~~---l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L 129 (635)
T 4g8a_A 53 STKNLDLSFNPLRH---LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 129 (635)
T ss_dssp TCCEEECTTSCCCE---ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEE
T ss_pred CCCEEEeeCCCCCC---CCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEE
Confidence 36777777766554 666667788888888888888877754 57788888888888888776 2 457788888888
Q ss_pred EccCCCCcccch-hhhccCCCCeeeccCccccccc-CcchhcCCccCceeecccccc
Q 037851 579 SLQGSKIEQLPR-EIGQLTQLKLLDLSNCSKLKVI-APNVLSNLSQLEELYMANCSI 633 (1053)
Q Consensus 579 ~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~-~~~~l~~l~~L~~L~l~~~~~ 633 (1053)
++++|.+..+|. .+++|++|++|++++| .+..+ .+..++++++|++|++++|.+
T Consensus 130 ~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~l 185 (635)
T 4g8a_A 130 VAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKI 185 (635)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred ECCCCcCCCCChhhhhcCcccCeeccccC-ccccCCCchhhccchhhhhhcccCccc
Confidence 888888877765 3678888888888874 45443 245567788888888887766
No 24
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.92 E-value=6e-24 Score=252.26 Aligned_cols=430 Identities=17% Similarity=0.172 Sum_probs=286.0
Q ss_pred eEEeecCccccCCCcccccCccCcEEEcCCcccCCc--cccCCCCCCcEEEccCCCCccc-chhhhccCCCCeeeccCcc
Q 037851 531 KVLDFTRMRLLSLPSSIHLLTDLRTLCLDGCELEDI--RVIGELKDLEILSLQGSKIEQL-PREIGQLTQLKLLDLSNCS 607 (1053)
Q Consensus 531 r~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~~--~~i~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~ 607 (1053)
++|+++++.++.+|..+. .+|++|++++|.+..+ ..++.+++|++|++++|.+..+ |..++++++|++|++++ +
T Consensus 3 ~~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-N 79 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH-N 79 (520)
T ss_dssp CEEECTTSCCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS-S
T ss_pred ceEecCCCCccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC-C
Confidence 689999999999998776 8999999999999883 6899999999999999999977 77899999999999999 5
Q ss_pred cccccCcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCCeEEEEeccCCCCCCccccccC--ceEEE
Q 037851 608 KLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLEINILDAGILPSGFFSRKL--KRYRI 685 (1053)
Q Consensus 608 ~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~L--~~l~l 685 (1053)
.+..+|+. .+++|++|++++|.+. ....+..++++++|+.|+++++..... ......+| +.+.+
T Consensus 80 ~l~~lp~~---~l~~L~~L~L~~N~l~----------~~~~p~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~L~L~~L~l 145 (520)
T 2z7x_B 80 KLVKISCH---PTVNLKHLDLSFNAFD----------ALPICKEFGNMSQLKFLGLSTTHLEKS-SVLPIAHLNISKVLL 145 (520)
T ss_dssp CCCEEECC---CCCCCSEEECCSSCCS----------SCCCCGGGGGCTTCCEEEEEESSCCGG-GGGGGTTSCEEEEEE
T ss_pred ceeecCcc---ccCCccEEeccCCccc----------cccchhhhccCCcceEEEecCcccchh-hccccccceeeEEEe
Confidence 78888654 8999999999999872 112456789999999999999875431 11112566 77777
Q ss_pred EEccc--CCC-CCccccc--ceeeecc--CCcc-ccccc--cccCccceeeccccC------Cccccccccccccccccc
Q 037851 686 VVGFQ--WAP-FDKYKTR--RTLKLKL--NSRI-CLEEW--RGMKNVEYLRLDELP------GLTNVLHDLDGEGFAELK 749 (1053)
Q Consensus 686 ~~~~~--~~~-~~~~~~l--~~l~l~~--~~~~-~~~~~--~~l~~L~~L~L~~~~------~~~~~~~~l~~~~l~~L~ 749 (1053)
..+.. ... ......+ +.+.+.. +... ..+.. ..+++|+.|+++++. .....++.+ ..+++|+
T Consensus 146 ~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l--~~l~~L~ 223 (520)
T 2z7x_B 146 VLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKL--QTNPKLS 223 (520)
T ss_dssp EECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGG--GGCTTCC
T ss_pred ecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhh--ccccchh
Confidence 65432 110 1111111 2233322 2111 11111 157788888887653 122223333 5678888
Q ss_pred EEEeecCCCceeecCCccc---ccCcCCccceeecccccccccccccccC--ccccCCccEEeEccCCCccccCCchhhh
Q 037851 750 HLNVKNNSNFLCIVDPLQV---RCGAFPMLESLVLQNLINLERICHGQLR--AESFCNLKTIKVGSCHKLKNLFSFSIAK 824 (1053)
Q Consensus 750 ~L~l~~~~~l~~i~~~~~~---~~~~~p~L~~L~l~~~~~L~~~~~~~~~--~~~~~~L~~L~i~~c~~l~~l~~~~~~~ 824 (1053)
.|++.++. +.+.... .....++|+.|+++++.--..++...+. .+.+++|+.+++.++. + .+|. ..+.
T Consensus 224 ~L~l~~~~----l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~-~-~~p~-~~~~ 296 (520)
T 2z7x_B 224 NLTLNNIE----TTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDV-F-GFPQ-SYIY 296 (520)
T ss_dssp EEEEEEEE----EEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECC-C-CSCT-HHHH
T ss_pred hccccccc----cCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccc-e-ecch-hhhh
Confidence 88888764 1110000 0112458899999886422233322211 1567788888887765 3 4542 2233
Q ss_pred cc---CCccEEEecccchhhhHhhcCcccccccccccccceEecCCCcccccccccccccccccchhhhhHhhhccccCC
Q 037851 825 FL---PQLKTIEVTECKIVEEIFVSSNEEAIGEIALAQVRSLILRTLPLLASFSAFVKTTSTVEAKHNEIILENESQLHT 901 (1053)
Q Consensus 825 ~l---~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~si~~~~~~~~~l~~~~~~~~~~~~~~~~~ 901 (1053)
.+ ++|+.|++++|....... ...+++|++|++++|.--..++..
T Consensus 297 ~~~~~~~L~~L~l~~n~l~~~~~---------~~~l~~L~~L~Ls~n~l~~~~~~~------------------------ 343 (520)
T 2z7x_B 297 EIFSNMNIKNFTVSGTRMVHMLC---------PSKISPFLHLDFSNNLLTDTVFEN------------------------ 343 (520)
T ss_dssp HHHHTCCCSEEEEESSCCCCCCC---------CSSCCCCCEEECCSSCCCTTTTTT------------------------
T ss_pred cccccCceeEEEcCCCccccccc---------hhhCCcccEEEeECCccChhhhhh------------------------
Confidence 33 679999999885322110 024789999999988543322221
Q ss_pred CCccccccccccccceEeecccccceeccCCccccccccCCcccEEEEecCccccc-cccchhHhhhccCcEEEEecccc
Q 037851 902 PSSLFNVKLVLPNLEVLEVRDLNVAKIWHNQFSAAMSCNVQNLTRLVVLDCHKLRY-VFSYSTAKRLGQLKHLVISRCPL 980 (1053)
Q Consensus 902 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~-l~~~~~l~~l~sL~~L~i~~c~~ 980 (1053)
...+++|++|++++|.+.++.. + ...+..+++|+.|+++++ ++.. + +...+..+++|+.|++++|..
T Consensus 344 -------~~~l~~L~~L~L~~N~l~~l~~--~-~~~~~~l~~L~~L~Ls~N-~l~~~l-~~~~~~~l~~L~~L~Ls~N~l 411 (520)
T 2z7x_B 344 -------CGHLTELETLILQMNQLKELSK--I-AEMTTQMKSLQQLDISQN-SVSYDE-KKGDCSWTKSLLSLNMSSNIL 411 (520)
T ss_dssp -------CCCCSSCCEEECCSSCCCBHHH--H-HHHHTTCTTCCEEECCSS-CCBCCG-GGCSCCCCTTCCEEECCSSCC
T ss_pred -------hccCCCCCEEEccCCccCcccc--c-hHHHhhCCCCCEEECCCC-cCCccc-ccchhccCccCCEEECcCCCC
Confidence 1228999999999998775321 0 012457899999999995 4555 4 434567789999999999973
Q ss_pred cceeecccCccccCCcccccccCccccccccccccccCCCCccCCCCcceEEEecCCCCccccCC
Q 037851 981 LEEIVGKEGGVEADPSFVFPQLTILKLSSLPELRAFYPGIHTLECPILTKLEVSFCHKLESFSSE 1045 (1053)
Q Consensus 981 l~~i~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~l~~~~~~~~~~sL~~L~I~~Cp~L~~l~~~ 1045 (1053)
...++ ....++|+.|++++| +++.+|.+.. .+++|++|++++| +++.+|..
T Consensus 412 ~~~~~----------~~l~~~L~~L~Ls~N-~l~~ip~~~~--~l~~L~~L~L~~N-~l~~l~~~ 462 (520)
T 2z7x_B 412 TDTIF----------RCLPPRIKVLDLHSN-KIKSIPKQVV--KLEALQELNVASN-QLKSVPDG 462 (520)
T ss_dssp CGGGG----------GSCCTTCCEEECCSS-CCCCCCGGGG--GCTTCCEEECCSS-CCCCCCTT
T ss_pred Ccchh----------hhhcccCCEEECCCC-cccccchhhh--cCCCCCEEECCCC-cCCccCHH
Confidence 22221 111279999999987 6788887655 5799999999998 47777654
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.91 E-value=2.3e-23 Score=249.17 Aligned_cols=450 Identities=16% Similarity=0.169 Sum_probs=273.7
Q ss_pred ceEEeeccCCCCCCCCCcccccCCCceeEEeecCccccCCC-cccccCccCcEEEcCCcccCC--ccccCCCCCCcEEEc
Q 037851 504 SRISLYDNNINSPLKIPDNIFIGTPKLKVLDFTRMRLLSLP-SSIHLLTDLRTLCLDGCELED--IRVIGELKDLEILSL 580 (1053)
Q Consensus 504 ~~l~l~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp-~~i~~l~~Lr~L~L~~~~~~~--~~~i~~l~~L~~L~l 580 (1053)
+.+.+..+.... +|..++ ++|++|++++|.+..+| ..+..+++|++|++++|.++. +..++++++|++|++
T Consensus 34 ~~l~ls~~~L~~---ip~~~~---~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 107 (562)
T 3a79_B 34 SMVDYSNRNLTH---VPKDLP---PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV 107 (562)
T ss_dssp CEEECTTSCCCS---CCTTSC---TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred cEEEcCCCCCcc---CCCCCC---CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence 456666555443 777653 78999999999999886 589999999999999999887 477999999999999
Q ss_pred cCCCCcccchhhhccCCCCeeeccCcccccccC-cchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCC
Q 037851 581 QGSKIEQLPREIGQLTQLKLLDLSNCSKLKVIA-PNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLT 659 (1053)
Q Consensus 581 ~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~ 659 (1053)
++|.+..+|.. .+++|++|++++| .+..++ |..++++++|++|++++|.+. ...+..+.++ +|+
T Consensus 108 s~N~l~~lp~~--~l~~L~~L~Ls~N-~l~~l~~p~~~~~l~~L~~L~L~~n~l~-----------~~~~~~l~~L-~L~ 172 (562)
T 3a79_B 108 SHNRLQNISCC--PMASLRHLDLSFN-DFDVLPVCKEFGNLTKLTFLGLSAAKFR-----------QLDLLPVAHL-HLS 172 (562)
T ss_dssp TTSCCCEECSC--CCTTCSEEECCSS-CCSBCCCCGGGGGCTTCCEEEEECSBCC-----------TTTTGGGTTS-CEE
T ss_pred CCCcCCccCcc--ccccCCEEECCCC-CccccCchHhhcccCcccEEecCCCccc-----------cCchhhhhhc-eee
Confidence 99999999987 8999999999994 677765 467899999999999998872 2334444444 559
Q ss_pred eEEEEeccC--CC-CCCccccccCceEEEEEccc--CC-----CCCcccccceeeeccCCc--cc----cccccccCccc
Q 037851 660 SLEINILDA--GI-LPSGFFSRKLKRYRIVVGFQ--WA-----PFDKYKTRRTLKLKLNSR--IC----LEEWRGMKNVE 723 (1053)
Q Consensus 660 ~L~i~~~~~--~~-~~~~~~~~~L~~l~l~~~~~--~~-----~~~~~~~l~~l~l~~~~~--~~----~~~~~~l~~L~ 723 (1053)
.|+++.+.. .. .+..+..-..+.+.+..... .. .......++.+++..+.. .. ++.+..+++|+
T Consensus 173 ~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~ 252 (562)
T 3a79_B 173 CILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLL 252 (562)
T ss_dssp EEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCE
T ss_pred EEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcce
Confidence 999998865 22 23333211122333322110 00 012234455555554421 01 11222556666
Q ss_pred eeeccccCCccccccccc-ccccccccEEEeecCCCceeecCCcccccCcCCccceeecccccccc-ccccccc-Ccccc
Q 037851 724 YLRLDELPGLTNVLHDLD-GEGFAELKHLNVKNNSNFLCIVDPLQVRCGAFPMLESLVLQNLINLE-RICHGQL-RAESF 800 (1053)
Q Consensus 724 ~L~L~~~~~~~~~~~~l~-~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~p~L~~L~l~~~~~L~-~~~~~~~-~~~~~ 800 (1053)
.|++.++....+.+..+. ....++|++|++++|.-...++.... ....++|+.|.+.++..-. .++...+ ..-..
T Consensus 253 ~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~--~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~ 330 (562)
T 3a79_B 253 NVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEF--TYSETALKSLMIEHVKNQVFLFSKEALYSVFAE 330 (562)
T ss_dssp EEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCC--CCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHT
T ss_pred EEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhh--hcccccchheehhhcccceeecChhhhhhhhcc
Confidence 666655432111111000 01234788888887741111211110 0112555555555433211 0100000 00012
Q ss_pred CCccEEeEccCCCccccCCchhhhccCCccEEEecccchhhhHhhcCcccccccccccccceEecCCCcccccccccccc
Q 037851 801 CNLKTIKVGSCHKLKNLFSFSIAKFLPQLKTIEVTECKIVEEIFVSSNEEAIGEIALAQVRSLILRTLPLLASFSAFVKT 880 (1053)
Q Consensus 801 ~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~si~~~~~~ 880 (1053)
++|+.|++.+|. +...+ ....+++|++|++++|......+.. ...+++|++|++.++. ++.++...
T Consensus 331 ~~L~~L~l~~n~-~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~-------~~~l~~L~~L~L~~N~-l~~~~~~~-- 396 (562)
T 3a79_B 331 MNIKMLSISDTP-FIHMV---CPPSPSSFTFLNFTQNVFTDSVFQG-------CSTLKRLQTLILQRNG-LKNFFKVA-- 396 (562)
T ss_dssp CCCSEEEEESSC-CCCCC---CCSSCCCCCEEECCSSCCCTTTTTT-------CCSCSSCCEEECCSSC-CCBTTHHH--
T ss_pred CcceEEEccCCC-ccccc---CccCCCCceEEECCCCccccchhhh-------hcccCCCCEEECCCCC-cCCcccch--
Confidence 568888888874 33321 1257788889998887544333221 1247888888888873 33322100
Q ss_pred cccccchhhhhHhhhccccCCCCccccccccccccceEeecccccce-eccCCccccccccCCcccEEEEecCccccccc
Q 037851 881 TSTVEAKHNEIILENESQLHTPSSLFNVKLVLPNLEVLEVRDLNVAK-IWHNQFSAAMSCNVQNLTRLVVLDCHKLRYVF 959 (1053)
Q Consensus 881 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~ 959 (1053)
..+..+++|++|++++|.+.. ++... ...+++|+.|++++|. ++...
T Consensus 397 --------------------------~~~~~l~~L~~L~l~~N~l~~~~~~~~-----~~~l~~L~~L~l~~n~-l~~~~ 444 (562)
T 3a79_B 397 --------------------------LMTKNMSSLETLDVSLNSLNSHAYDRT-----CAWAESILVLNLSSNM-LTGSV 444 (562)
T ss_dssp --------------------------HTTTTCTTCCEEECTTSCCBSCCSSCC-----CCCCTTCCEEECCSSC-CCGGG
T ss_pred --------------------------hhhcCCCCCCEEECCCCcCCCccChhh-----hcCcccCCEEECCCCC-CCcch
Confidence 001127889999999988776 44322 3457889999998864 44332
Q ss_pred cchhHhhh-ccCcEEEEecccccceeecccCccccCCcccccccCccccccccccccccCCCCccCCCCcceEEEecCC
Q 037851 960 SYSTAKRL-GQLKHLVISRCPLLEEIVGKEGGVEADPSFVFPQLTILKLSSLPELRAFYPGIHTLECPILTKLEVSFCH 1037 (1053)
Q Consensus 960 ~~~~l~~l-~sL~~L~i~~c~~l~~i~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~l~~~~~~~~~~sL~~L~I~~Cp 1037 (1053)
+ ..+ ++|+.|++++|. ++.++. ....+++|++|+++++ .++.+|... ...+++|+.|+++++|
T Consensus 445 ~----~~l~~~L~~L~L~~N~-l~~ip~--------~~~~l~~L~~L~L~~N-~l~~l~~~~-~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 445 F----RCLPPKVKVLDLHNNR-IMSIPK--------DVTHLQALQELNVASN-QLKSVPDGV-FDRLTSLQYIWLHDNP 508 (562)
T ss_dssp G----SSCCTTCSEEECCSSC-CCCCCT--------TTTSSCCCSEEECCSS-CCCCCCTTS-TTTCTTCCCEECCSCC
T ss_pred h----hhhcCcCCEEECCCCc-CcccCh--------hhcCCCCCCEEECCCC-CCCCCCHHH-HhcCCCCCEEEecCCC
Confidence 2 233 689999999985 665532 1225788999999886 577888762 2246889999998876
No 26
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.91 E-value=2.3e-23 Score=255.31 Aligned_cols=142 Identities=18% Similarity=0.295 Sum_probs=121.4
Q ss_pred CCcccccCCCceeEEeecCccccC------------------CCcccc--cCccCcEEEcCCcccCC--ccccCCCCCCc
Q 037851 519 IPDNIFIGTPKLKVLDFTRMRLLS------------------LPSSIH--LLTDLRTLCLDGCELED--IRVIGELKDLE 576 (1053)
Q Consensus 519 ~~~~~~~~~~~Lr~L~l~~~~~~~------------------lp~~i~--~l~~Lr~L~L~~~~~~~--~~~i~~l~~L~ 576 (1053)
+|.. |.++++|++|++++|.+.. +|+.++ ++++|++|+|++|.+.. |..++++++|+
T Consensus 440 IP~~-l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~ 518 (876)
T 4ecn_A 440 ISKA-IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ 518 (876)
T ss_dssp ECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCC
T ss_pred hhHH-HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCC
Confidence 6665 6789999999999999998 999988 99999999999998765 78899999999
Q ss_pred EEEccCCC-Cc--ccchhhhccC-------CCCeeeccCcccccccCc-chhcCCccCceeecccccccccccCCccccc
Q 037851 577 ILSLQGSK-IE--QLPREIGQLT-------QLKLLDLSNCSKLKVIAP-NVLSNLSQLEELYMANCSIEWEHLGPGIERS 645 (1053)
Q Consensus 577 ~L~l~~~~-l~--~lp~~i~~L~-------~L~~L~l~~~~~l~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 645 (1053)
+|++++|. +. .+|..++++. +|++|++++| .+..+|. ..++++++|++|++++|.+.
T Consensus 519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~l~~L~~L~~L~Ls~N~l~----------- 586 (876)
T 4ecn_A 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEEFPASASLQKMVKLGLLDCVHNKVR----------- 586 (876)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCCBCCCHHHHTTCTTCCEEECTTSCCC-----------
T ss_pred EEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCCccCChhhhhcCCCCCEEECCCCCcc-----------
Confidence 99999998 87 4999888887 9999999994 6777765 26899999999999999872
Q ss_pred CCChhhhcCCCCCCeEEEEeccCCCCCCcc
Q 037851 646 NASLDELKNLSRLTSLEINILDAGILPSGF 675 (1053)
Q Consensus 646 ~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~ 675 (1053)
.+..++++++|+.|+++.+....+|..+
T Consensus 587 --~lp~~~~L~~L~~L~Ls~N~l~~lp~~l 614 (876)
T 4ecn_A 587 --HLEAFGTNVKLTDLKLDYNQIEEIPEDF 614 (876)
T ss_dssp --BCCCCCTTSEESEEECCSSCCSCCCTTS
T ss_pred --cchhhcCCCcceEEECcCCccccchHHH
Confidence 2227888999999999988776666543
No 27
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.90 E-value=4.5e-22 Score=231.91 Aligned_cols=342 Identities=20% Similarity=0.250 Sum_probs=188.1
Q ss_pred CCceeEEeecCccccCCCcccccCccCcEEEcCCcccCCccccCCCCCCcEEEccCCCCcccchhhhccCCCCeeeccCc
Q 037851 527 TPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDGCELEDIRVIGELKDLEILSLQGSKIEQLPREIGQLTQLKLLDLSNC 606 (1053)
Q Consensus 527 ~~~Lr~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~ 606 (1053)
+++++.|+++++.+..+|. +..+++|++|++++|.+...+.++.+++|++|++++|.+..+|. ++++++|++|++++|
T Consensus 45 l~~l~~L~l~~~~i~~l~~-~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n 122 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNN 122 (466)
T ss_dssp HHTCCEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS
T ss_pred hccccEEecCCCCCccCcc-hhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh-hcCCCCCCEEECCCC
Confidence 3455555555555555553 55555566666666555553335555666666666555555554 555566666666553
Q ss_pred ccccccCcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCCeEEEEeccCCCCCCccccccCceEEEE
Q 037851 607 SKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLEINILDAGILPSGFFSRKLKRYRIV 686 (1053)
Q Consensus 607 ~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~L~~l~l~ 686 (1053)
.+..+++ +.++++|++|++++|.+. .+..+..+++|+.|.+... ....+.
T Consensus 123 -~l~~~~~--~~~l~~L~~L~l~~n~l~-------------~~~~~~~l~~L~~L~l~~~-~~~~~~------------- 172 (466)
T 1o6v_A 123 -QITDIDP--LKNLTNLNRLELSSNTIS-------------DISALSGLTSLQQLSFGNQ-VTDLKP------------- 172 (466)
T ss_dssp -CCCCCGG--GTTCTTCSEEEEEEEEEC-------------CCGGGTTCTTCSEEEEEES-CCCCGG-------------
T ss_pred -CCCCChH--HcCCCCCCEEECCCCccC-------------CChhhccCCcccEeecCCc-ccCchh-------------
Confidence 4444433 555566666665555441 1223455555555555421 111111
Q ss_pred EcccCCCCCcccccceeeeccCCccccccccccCccceeeccccCCcccccccccccccccccEEEeecCCCceeecCCc
Q 037851 687 VGFQWAPFDKYKTRRTLKLKLNSRICLEEWRGMKNVEYLRLDELPGLTNVLHDLDGEGFAELKHLNVKNNSNFLCIVDPL 766 (1053)
Q Consensus 687 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~i~~~~ 766 (1053)
....+.++.+++..+....++.+..+++|++|+++++... ...+ + +.+++|+.|++++|. +..+
T Consensus 173 -------~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~-~~~~-~--~~l~~L~~L~l~~n~-l~~~---- 236 (466)
T 1o6v_A 173 -------LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQIS-DITP-L--GILTNLDELSLNGNQ-LKDI---- 236 (466)
T ss_dssp -------GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCC-CCGG-G--GGCTTCCEEECCSSC-CCCC----
T ss_pred -------hccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCccc-cccc-c--cccCCCCEEECCCCC-cccc----
Confidence 0111222333333332222233335677777777765432 2111 2 457778888887764 2222
Q ss_pred ccccCcCCccceeecccccccccccccccCccccCCccEEeEccCCCccccCCchhhhccCCccEEEecccchhhhHhhc
Q 037851 767 QVRCGAFPMLESLVLQNLINLERICHGQLRAESFCNLKTIKVGSCHKLKNLFSFSIAKFLPQLKTIEVTECKIVEEIFVS 846 (1053)
Q Consensus 767 ~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~ 846 (1053)
.....+++|+.|+++++. +.... +...+++|+.|++++|. +..+++ +..+++|+.|++++|..- .++.
T Consensus 237 -~~l~~l~~L~~L~l~~n~-l~~~~----~~~~l~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~L~~n~l~-~~~~- 304 (466)
T 1o6v_A 237 -GTLASLTNLTDLDLANNQ-ISNLA----PLSGLTKLTELKLGANQ-ISNISP---LAGLTALTNLELNENQLE-DISP- 304 (466)
T ss_dssp -GGGGGCTTCSEEECCSSC-CCCCG----GGTTCTTCSEEECCSSC-CCCCGG---GTTCTTCSEEECCSSCCS-CCGG-
T ss_pred -hhhhcCCCCCEEECCCCc-cccch----hhhcCCCCCEEECCCCc-cCcccc---ccCCCccCeEEcCCCccc-Cchh-
Confidence 123456777788777743 33331 13567778888887763 555533 566778888888877432 2211
Q ss_pred CcccccccccccccceEecCCCcccccccccccccccccchhhhhHhhhccccCCCCccccccccccccceEeecccccc
Q 037851 847 SNEEAIGEIALAQVRSLILRTLPLLASFSAFVKTTSTVEAKHNEIILENESQLHTPSSLFNVKLVLPNLEVLEVRDLNVA 926 (1053)
Q Consensus 847 ~~~~~~~~~~~~~L~~L~l~~c~~L~si~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 926 (1053)
...+++|+.|++.+|. +..++. ...+++|++|++++|.+.
T Consensus 305 -------~~~l~~L~~L~L~~n~-l~~~~~--------------------------------~~~l~~L~~L~l~~n~l~ 344 (466)
T 1o6v_A 305 -------ISNLKNLTYLTLYFNN-ISDISP--------------------------------VSSLTKLQRLFFYNNKVS 344 (466)
T ss_dssp -------GGGCTTCSEEECCSSC-CSCCGG--------------------------------GGGCTTCCEEECCSSCCC
T ss_pred -------hcCCCCCCEEECcCCc-CCCchh--------------------------------hccCccCCEeECCCCccC
Confidence 1246777888877773 222211 112778888888887766
Q ss_pred eeccCCccccccccCCcccEEEEecCccccccccchhHhhhccCcEEEEeccc
Q 037851 927 KIWHNQFSAAMSCNVQNLTRLVVLDCHKLRYVFSYSTAKRLGQLKHLVISRCP 979 (1053)
Q Consensus 927 ~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~l~~l~sL~~L~i~~c~ 979 (1053)
++. .+..+++|+.|++.+| ++.+..+ +..+++|+.|++++|+
T Consensus 345 ~~~-------~l~~l~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 345 DVS-------SLANLTNINWLSAGHN-QISDLTP---LANLTRITQLGLNDQA 386 (466)
T ss_dssp CCG-------GGTTCTTCCEEECCSS-CCCBCGG---GTTCTTCCEEECCCEE
T ss_pred Cch-------hhccCCCCCEEeCCCC-ccCccch---hhcCCCCCEEeccCCc
Confidence 542 2356778888888776 4555533 5677888888888876
No 28
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.90 E-value=5e-22 Score=242.57 Aligned_cols=141 Identities=28% Similarity=0.336 Sum_probs=118.7
Q ss_pred CCCcccccCCCceeEEeecCccccCCCc-ccccCccCcEEEcCCcccCC--ccccCCCCCCcEEEccCCCCcccchh-hh
Q 037851 518 KIPDNIFIGTPKLKVLDFTRMRLLSLPS-SIHLLTDLRTLCLDGCELED--IRVIGELKDLEILSLQGSKIEQLPRE-IG 593 (1053)
Q Consensus 518 ~~~~~~~~~~~~Lr~L~l~~~~~~~lp~-~i~~l~~Lr~L~L~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~lp~~-i~ 593 (1053)
.+|.++ -..+++|++++|.++.+|+ +|.++++|++|+|++|.++. +..|++|++|++|+|++|.++.+|.. +.
T Consensus 45 ~vP~~l---p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~ 121 (635)
T 4g8a_A 45 KIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 121 (635)
T ss_dssp SCCSSS---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGT
T ss_pred ccCCCC---CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhc
Confidence 466553 2478999999999999875 79999999999999999988 35699999999999999999999864 79
Q ss_pred ccCCCCeeeccCcccccccCcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCCeEEEEeccCCCCC
Q 037851 594 QLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLEINILDAGILP 672 (1053)
Q Consensus 594 ~L~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~ 672 (1053)
+|++|++|++++ +.+..+++..++++++|++|++++|.+. .......++.+++|+.|+++.+....++
T Consensus 122 ~L~~L~~L~Ls~-N~l~~l~~~~~~~L~~L~~L~Ls~N~l~----------~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 189 (635)
T 4g8a_A 122 GLSSLQKLVAVE-TNLASLENFPIGHLKTLKELNVAHNLIQ----------SFKLPEYFSNLTNLEHLDLSSNKIQSIY 189 (635)
T ss_dssp TCTTCCEEECTT-SCCCCSTTCCCTTCTTCCEEECCSSCCC----------CCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred CCCCCCEEECCC-CcCCCCChhhhhcCcccCeeccccCccc----------cCCCchhhccchhhhhhcccCccccccc
Confidence 999999999999 4788898888999999999999999873 1233456778899999999887655443
No 29
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.89 E-value=3.9e-22 Score=232.48 Aligned_cols=130 Identities=22% Similarity=0.306 Sum_probs=101.6
Q ss_pred CceeEEeecCccccCC-CcccccCccCcEEEcCCcccCC---ccccCCCCCCcEEEccCCCCccc-chhhhccCCCCeee
Q 037851 528 PKLKVLDFTRMRLLSL-PSSIHLLTDLRTLCLDGCELED---IRVIGELKDLEILSLQGSKIEQL-PREIGQLTQLKLLD 602 (1053)
Q Consensus 528 ~~Lr~L~l~~~~~~~l-p~~i~~l~~Lr~L~L~~~~~~~---~~~i~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~ 602 (1053)
++|++|++++|.+..+ |..+.++++|++|++++|.+.. +..++++++|++|++++|.+..+ |..++++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 7889999999998876 6678999999999999998753 46788999999999999998866 77889999999999
Q ss_pred ccCcccccccCc--chhcCCccCceeecccccccccccCCcccccCCChhh-hcCCCCCCeEEEEeccCC
Q 037851 603 LSNCSKLKVIAP--NVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDE-LKNLSRLTSLEINILDAG 669 (1053)
Q Consensus 603 l~~~~~l~~~~~--~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~l~~L~~L~i~~~~~~ 669 (1053)
+++| .+....+ ..++++++|++|++++|.+. ...+.. +.++++|+.|+++++...
T Consensus 110 L~~n-~l~~~~~~~~~~~~l~~L~~L~L~~n~l~-----------~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 110 LTQC-NLDGAVLSGNFFKPLTSLEMLVLRDNNIK-----------KIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp CTTS-CCBTHHHHSSTTTTCTTCCEEECCSSBCC-----------SCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred CCCC-CCCccccCcccccCcccCCEEECCCCccC-----------ccCcccccCCCCcccEEeCCCCccc
Confidence 9985 4554222 33788999999999988762 222233 677888888888776543
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.89 E-value=1.8e-21 Score=226.76 Aligned_cols=343 Identities=19% Similarity=0.240 Sum_probs=249.7
Q ss_pred cceEEeeccCCCCCCCCCcccccCCCceeEEeecCccccCCCcccccCccCcEEEcCCcccCCccccCCCCCCcEEEccC
Q 037851 503 CSRISLYDNNINSPLKIPDNIFIGTPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDGCELEDIRVIGELKDLEILSLQG 582 (1053)
Q Consensus 503 ~~~l~l~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~~~~i~~l~~L~~L~l~~ 582 (1053)
.+.+.+..+.... +|. +..+++|++|++++|.+..+|+ +..+++|++|++++|.+.....++++++|++|++++
T Consensus 48 l~~L~l~~~~i~~---l~~--~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~ 121 (466)
T 1o6v_A 48 VTTLQADRLGIKS---IDG--VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFN 121 (466)
T ss_dssp CCEEECCSSCCCC---CTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCS
T ss_pred ccEEecCCCCCcc---Ccc--hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChhhcCCCCCCEEECCC
Confidence 5666666554433 443 5789999999999999999887 999999999999999998865599999999999999
Q ss_pred CCCcccchhhhccCCCCeeeccCcccccccCcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCCeEE
Q 037851 583 SKIEQLPREIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLE 662 (1053)
Q Consensus 583 ~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~ 662 (1053)
|.+..+|. +.++++|++|++++| .+..++. ++++++|++|++.++. ..+..+.++++|+.|+
T Consensus 122 n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~l~~~~--------------~~~~~~~~l~~L~~L~ 183 (466)
T 1o6v_A 122 NQITDIDP-LKNLTNLNRLELSSN-TISDISA--LSGLTSLQQLSFGNQV--------------TDLKPLANLTTLERLD 183 (466)
T ss_dssp SCCCCCGG-GTTCTTCSEEEEEEE-EECCCGG--GTTCTTCSEEEEEESC--------------CCCGGGTTCTTCCEEE
T ss_pred CCCCCChH-HcCCCCCCEEECCCC-ccCCChh--hccCCcccEeecCCcc--------------cCchhhccCCCCCEEE
Confidence 99999886 999999999999995 5776643 8999999999986432 1233488899999999
Q ss_pred EEeccCCCCCCccccccCceEEEEEcccCCCCCcccccceeeeccCCccccccccccCccceeeccccCCcccccccccc
Q 037851 663 INILDAGILPSGFFSRKLKRYRIVVGFQWAPFDKYKTRRTLKLKLNSRICLEEWRGMKNVEYLRLDELPGLTNVLHDLDG 742 (1053)
Q Consensus 663 i~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~ 742 (1053)
++.+....++.. ...+.++.+.+..+.....+....+++|+.|+++++... . ++.+
T Consensus 184 l~~n~l~~~~~l--------------------~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~-~-~~~l-- 239 (466)
T 1o6v_A 184 ISSNKVSDISVL--------------------AKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLK-D-IGTL-- 239 (466)
T ss_dssp CCSSCCCCCGGG--------------------GGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCC-C-CGGG--
T ss_pred CcCCcCCCChhh--------------------ccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcc-c-chhh--
Confidence 988876554321 123344555555554444444447888999999886432 2 2333
Q ss_pred cccccccEEEeecCCCceeecCCcccccCcCCccceeecccccccccccccccCccccCCccEEeEccCCCccccCCchh
Q 037851 743 EGFAELKHLNVKNNSNFLCIVDPLQVRCGAFPMLESLVLQNLINLERICHGQLRAESFCNLKTIKVGSCHKLKNLFSFSI 822 (1053)
Q Consensus 743 ~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~ 822 (1053)
..+++|+.|++++|. +..+. ....+++|+.|+++++ .+..+. +...+++|+.|++.+|. ++.+++
T Consensus 240 ~~l~~L~~L~l~~n~-l~~~~-----~~~~l~~L~~L~l~~n-~l~~~~----~~~~l~~L~~L~L~~n~-l~~~~~--- 304 (466)
T 1o6v_A 240 ASLTNLTDLDLANNQ-ISNLA-----PLSGLTKLTELKLGAN-QISNIS----PLAGLTALTNLELNENQ-LEDISP--- 304 (466)
T ss_dssp GGCTTCSEEECCSSC-CCCCG-----GGTTCTTCSEEECCSS-CCCCCG----GGTTCTTCSEEECCSSC-CSCCGG---
T ss_pred hcCCCCCEEECCCCc-cccch-----hhhcCCCCCEEECCCC-ccCccc----cccCCCccCeEEcCCCc-ccCchh---
Confidence 578899999999886 22221 1457889999999885 444442 14578999999999874 666644
Q ss_pred hhccCCccEEEecccchhhhHhhcCcccccccccccccceEecCCCcccccccccccccccccchhhhhHhhhccccCCC
Q 037851 823 AKFLPQLKTIEVTECKIVEEIFVSSNEEAIGEIALAQVRSLILRTLPLLASFSAFVKTTSTVEAKHNEIILENESQLHTP 902 (1053)
Q Consensus 823 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~si~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 902 (1053)
+..+++|+.|++++|......+ ...+++|++|++.+|+ +..++.
T Consensus 305 ~~~l~~L~~L~L~~n~l~~~~~---------~~~l~~L~~L~l~~n~-l~~~~~-------------------------- 348 (466)
T 1o6v_A 305 ISNLKNLTYLTLYFNNISDISP---------VSSLTKLQRLFFYNNK-VSDVSS-------------------------- 348 (466)
T ss_dssp GGGCTTCSEEECCSSCCSCCGG---------GGGCTTCCEEECCSSC-CCCCGG--------------------------
T ss_pred hcCCCCCCEEECcCCcCCCchh---------hccCccCCEeECCCCc-cCCchh--------------------------
Confidence 6789999999999985433221 1248899999999883 333211
Q ss_pred CccccccccccccceEeecccccceeccCCccccccccCCcccEEEEecCcccccc
Q 037851 903 SSLFNVKLVLPNLEVLEVRDLNVAKIWHNQFSAAMSCNVQNLTRLVVLDCHKLRYV 958 (1053)
Q Consensus 903 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l 958 (1053)
...+++|++|++++|.+.+... ...+++|+.|++.+|+ ++..
T Consensus 349 ------l~~l~~L~~L~l~~n~l~~~~~-------~~~l~~L~~L~l~~n~-~~~~ 390 (466)
T 1o6v_A 349 ------LANLTNINWLSAGHNQISDLTP-------LANLTRITQLGLNDQA-WTNA 390 (466)
T ss_dssp ------GTTCTTCCEEECCSSCCCBCGG-------GTTCTTCCEEECCCEE-EECC
T ss_pred ------hccCCCCCEEeCCCCccCccch-------hhcCCCCCEEeccCCc-ccCC
Confidence 1128899999999998776432 4578899999999864 4443
No 31
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.88 E-value=5.3e-22 Score=231.29 Aligned_cols=366 Identities=17% Similarity=0.177 Sum_probs=226.8
Q ss_pred CcceEEeeccCCCCCCCCCcccccCCCceeEEeecCcccc-CC-CcccccCccCcEEEcCCcccCC--ccccCCCCCCcE
Q 037851 502 KCSRISLYDNNINSPLKIPDNIFIGTPKLKVLDFTRMRLL-SL-PSSIHLLTDLRTLCLDGCELED--IRVIGELKDLEI 577 (1053)
Q Consensus 502 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~-~l-p~~i~~l~~Lr~L~L~~~~~~~--~~~i~~l~~L~~ 577 (1053)
..+.+.+.++.+.. +++..|.++++|++|++++|.+. .+ |..+..+++|++|++++|.+.. +..++++++|++
T Consensus 31 ~l~~L~Ls~n~i~~---~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 107 (455)
T 3v47_A 31 HVNYVDLSLNSIAE---LNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEV 107 (455)
T ss_dssp TCCEEECCSSCCCE---ECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCE
T ss_pred ccCEEEecCCccCc---CChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCE
Confidence 46778887766543 44555788899999999998876 44 5568889999999999998876 567888999999
Q ss_pred EEccCCCCcc-cchh--hhccCCCCeeeccCcccccccCcch-hcCCccCceeecccccccccccCCcccccCCChhhhc
Q 037851 578 LSLQGSKIEQ-LPRE--IGQLTQLKLLDLSNCSKLKVIAPNV-LSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELK 653 (1053)
Q Consensus 578 L~l~~~~l~~-lp~~--i~~L~~L~~L~l~~~~~l~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~ 653 (1053)
|++++|.+.. .|.. ++++++|++|++++| .+..+.+.. ++++++|++|++++|.+. ......+.
T Consensus 108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~n~l~-----------~~~~~~l~ 175 (455)
T 3v47_A 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQPASFFLNMRRFHVLDLTFNKVK-----------SICEEDLL 175 (455)
T ss_dssp EECTTSCCBTHHHHSSTTTTCTTCCEEECCSS-BCCSCCCCGGGGGCTTCCEEECTTCCBS-----------CCCTTTSG
T ss_pred EeCCCCCCCccccCcccccCcccCCEEECCCC-ccCccCcccccCCCCcccEEeCCCCccc-----------ccChhhhh
Confidence 9999998874 4544 888899999999884 566664443 788899999999888762 22223333
Q ss_pred CC--CCCCeEEEEeccCCCCCCccccccCceEEEEEcccCCCCCcccccceeeeccCCccccccccccCccceeeccccC
Q 037851 654 NL--SRLTSLEINILDAGILPSGFFSRKLKRYRIVVGFQWAPFDKYKTRRTLKLKLNSRICLEEWRGMKNVEYLRLDELP 731 (1053)
Q Consensus 654 ~l--~~L~~L~i~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~L~~L~L~~~~ 731 (1053)
.+ .+|+.|+++.+....++..... ....+....+++|+.|+++++.
T Consensus 176 ~l~~~~L~~L~l~~n~l~~~~~~~~~--------------------------------~~~~~~~~~~~~L~~L~Ls~n~ 223 (455)
T 3v47_A 176 NFQGKHFTLLRLSSITLQDMNEYWLG--------------------------------WEKCGNPFKNTSITTLDLSGNG 223 (455)
T ss_dssp GGTTCEEEEEECTTCBCTTCSTTCTT--------------------------------HHHHCCTTTTCEEEEEECTTSC
T ss_pred ccccccccccccccCcccccchhhcc--------------------------------ccccccccccceeeeEecCCCc
Confidence 33 3555666655543333221100 0000111145677888887764
Q ss_pred Cccccccccc-ccccccccEEEeecCCCceeecCCcccccCcCCccceeecccccccccccccccCccccCCccEEeEcc
Q 037851 732 GLTNVLHDLD-GEGFAELKHLNVKNNSNFLCIVDPLQVRCGAFPMLESLVLQNLINLERICHGQLRAESFCNLKTIKVGS 810 (1053)
Q Consensus 732 ~~~~~~~~l~-~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L~i~~ 810 (1053)
-.......+. ....++|+.|+++++...... .....++.+... .+.....++|+.|++++
T Consensus 224 l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-----~~~~~~~~~~~~--------------~~~~~~~~~L~~L~l~~ 284 (455)
T 3v47_A 224 FKESMAKRFFDAIAGTKIQSLILSNSYNMGSS-----FGHTNFKDPDNF--------------TFKGLEASGVKTCDLSK 284 (455)
T ss_dssp CCHHHHHHHHHHTTTCCEEEEECTTCTTTSCC-----TTCCSSCCCCTT--------------TTGGGTTSCCCEEECCS
T ss_pred ccccchhhhhccccccceeeEeeccccccccc-----cchhhhccCccc--------------ccccccccCceEEEecC
Confidence 3222111110 012267777777766521110 001111111111 11112347788888888
Q ss_pred CCCccccCCchhhhccCCccEEEecccchhhhHhhcCcccccccccccccceEecCCCcccccccccccccccccchhhh
Q 037851 811 CHKLKNLFSFSIAKFLPQLKTIEVTECKIVEEIFVSSNEEAIGEIALAQVRSLILRTLPLLASFSAFVKTTSTVEAKHNE 890 (1053)
Q Consensus 811 c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~si~~~~~~~~~l~~~~~~ 890 (1053)
|. +...++ ..+..+++|++|++++|......+. ....+++|++|++++|.- ..++..
T Consensus 285 n~-l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~-------~~~~l~~L~~L~Ls~N~l-~~~~~~------------- 341 (455)
T 3v47_A 285 SK-IFALLK-SVFSHFTDLEQLTLAQNEINKIDDN-------AFWGLTHLLKLNLSQNFL-GSIDSR------------- 341 (455)
T ss_dssp SC-CCEECT-TTTTTCTTCCEEECTTSCCCEECTT-------TTTTCTTCCEEECCSSCC-CEECGG-------------
T ss_pred cc-ccccch-hhcccCCCCCEEECCCCcccccChh-------HhcCcccCCEEECCCCcc-CCcChh-------------
Confidence 74 444433 2467788888888888753322111 112477888888888732 332211
Q ss_pred hHhhhccccCCCCccccccccccccceEeecccccceeccCCccccccccCCcccEEEEecCccccccccchhHhhhccC
Q 037851 891 IILENESQLHTPSSLFNVKLVLPNLEVLEVRDLNVAKIWHNQFSAAMSCNVQNLTRLVVLDCHKLRYVFSYSTAKRLGQL 970 (1053)
Q Consensus 891 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~l~~l~sL 970 (1053)
.+..+++|++|++++|.+..+.... +..+++|++|++++ .+++.+ +...+..+++|
T Consensus 342 -----------------~~~~l~~L~~L~Ls~N~l~~~~~~~-----~~~l~~L~~L~L~~-N~l~~~-~~~~~~~l~~L 397 (455)
T 3v47_A 342 -----------------MFENLDKLEVLDLSYNHIRALGDQS-----FLGLPNLKELALDT-NQLKSV-PDGIFDRLTSL 397 (455)
T ss_dssp -----------------GGTTCTTCCEEECCSSCCCEECTTT-----TTTCTTCCEEECCS-SCCSCC-CTTTTTTCTTC
T ss_pred -----------------HhcCcccCCEEECCCCcccccChhh-----ccccccccEEECCC-CccccC-CHhHhccCCcc
Confidence 0112788999999999887764433 34678899999988 467776 33456788999
Q ss_pred cEEEEecccc
Q 037851 971 KHLVISRCPL 980 (1053)
Q Consensus 971 ~~L~i~~c~~ 980 (1053)
+.|++++|+.
T Consensus 398 ~~L~l~~N~l 407 (455)
T 3v47_A 398 QKIWLHTNPW 407 (455)
T ss_dssp CEEECCSSCB
T ss_pred cEEEccCCCc
Confidence 9999998873
No 32
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.88 E-value=3.8e-22 Score=230.01 Aligned_cols=395 Identities=20% Similarity=0.155 Sum_probs=191.3
Q ss_pred cceEEeeccCCCCCCCCCcccccCCCceeEEeecCcccc-CCCcccccCccC-------------cEEEcCCcccCCccc
Q 037851 503 CSRISLYDNNINSPLKIPDNIFIGTPKLKVLDFTRMRLL-SLPSSIHLLTDL-------------RTLCLDGCELEDIRV 568 (1053)
Q Consensus 503 ~~~l~l~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~-~lp~~i~~l~~L-------------r~L~L~~~~~~~~~~ 568 (1053)
.+.+.+..+... .+|++ +.++++|++|++++|.+. .+|.+++++.+| ++|++++|.++.++.
T Consensus 13 L~~L~l~~n~l~---~iP~~-i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~ 88 (454)
T 1jl5_A 13 LQEPLRHSSNLT---EMPVE-AENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPE 88 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCS
T ss_pred chhhhcccCchh---hCChh-HhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCC
Confidence 344555544442 25555 356777777777777665 566666666654 677777776666333
Q ss_pred cCCCCCCcEEEccCCCCcccchhhhccCCCCeeeccCcccccccCcchhcCCccCceeecccccccccccCCcccccCCC
Q 037851 569 IGELKDLEILSLQGSKIEQLPREIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNAS 648 (1053)
Q Consensus 569 i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 648 (1053)
+ .++|++|++++|.+..+|.. +.+|++|++++| .+..++. + .++|++|++++|.+. .
T Consensus 89 ~--~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n-~l~~l~~--~--~~~L~~L~L~~n~l~------------~- 145 (454)
T 1jl5_A 89 L--PPHLESLVASCNSLTELPEL---PQSLKSLLVDNN-NLKALSD--L--PPLLEYLGVSNNQLE------------K- 145 (454)
T ss_dssp C--CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSS-CCSCCCS--C--CTTCCEEECCSSCCS------------S-
T ss_pred C--cCCCCEEEccCCcCCccccc---cCCCcEEECCCC-ccCcccC--C--CCCCCEEECcCCCCC------------C-
Confidence 2 35677777777777666642 356777777663 4544432 1 156777777766551 1
Q ss_pred hhhhcCCCCCCeEEEEeccCCCCCCccccccCceEEEEEcccCCCCCcccccceeeeccCCccccccccccCccceeecc
Q 037851 649 LDELKNLSRLTSLEINILDAGILPSGFFSRKLKRYRIVVGFQWAPFDKYKTRRTLKLKLNSRICLEEWRGMKNVEYLRLD 728 (1053)
Q Consensus 649 ~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~L~~L~L~ 728 (1053)
+.+++++++|+.|+++++....+|... ..++.+++..+....+|.+..+++|+.|+++
T Consensus 146 lp~~~~l~~L~~L~l~~N~l~~lp~~~----------------------~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~ 203 (454)
T 1jl5_A 146 LPELQNSSFLKIIDVDNNSLKKLPDLP----------------------PSLEFIAAGNNQLEELPELQNLPFLTAIYAD 203 (454)
T ss_dssp CCCCTTCTTCCEEECCSSCCSCCCCCC----------------------TTCCEEECCSSCCSSCCCCTTCTTCCEEECC
T ss_pred CcccCCCCCCCEEECCCCcCcccCCCc----------------------ccccEEECcCCcCCcCccccCCCCCCEEECC
Confidence 224666777777777666554444322 2444555555444444544467777777777
Q ss_pred ccCCcccccccccccccccccEEEeecCCCceeecCCcccccCcCCccceeecccccccccccccccCccccCCccEEeE
Q 037851 729 ELPGLTNVLHDLDGEGFAELKHLNVKNNSNFLCIVDPLQVRCGAFPMLESLVLQNLINLERICHGQLRAESFCNLKTIKV 808 (1053)
Q Consensus 729 ~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L~i 808 (1053)
++.-. . ++. ..++|+.|++++|. +..+. ..+.+++|+.|+++++ .++.++ ..+++|+.|++
T Consensus 204 ~N~l~-~-l~~----~~~~L~~L~l~~n~-l~~lp-----~~~~l~~L~~L~l~~N-~l~~l~------~~~~~L~~L~l 264 (454)
T 1jl5_A 204 NNSLK-K-LPD----LPLSLESIVAGNNI-LEELP-----ELQNLPFLTTIYADNN-LLKTLP------DLPPSLEALNV 264 (454)
T ss_dssp SSCCS-S-CCC----CCTTCCEEECCSSC-CSSCC-----CCTTCTTCCEEECCSS-CCSSCC------SCCTTCCEEEC
T ss_pred CCcCC-c-CCC----CcCcccEEECcCCc-CCccc-----ccCCCCCCCEEECCCC-cCCccc------ccccccCEEEC
Confidence 65321 1 111 23567777777764 32222 1346677777777763 344332 12467777777
Q ss_pred ccCCCccccCCchhhhccCCccEEEecccchhhhHhhcCcccccccccccccceEecCCCcccccccccccccccccchh
Q 037851 809 GSCHKLKNLFSFSIAKFLPQLKTIEVTECKIVEEIFVSSNEEAIGEIALAQVRSLILRTLPLLASFSAFVKTTSTVEAKH 888 (1053)
Q Consensus 809 ~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~si~~~~~~~~~l~~~~ 888 (1053)
++|. ++.+|. .+++|+.|++++|.. ..++ ...++|+.|+++++. +..++.
T Consensus 265 ~~N~-l~~l~~-----~~~~L~~L~ls~N~l-~~l~----------~~~~~L~~L~l~~N~-l~~i~~------------ 314 (454)
T 1jl5_A 265 RDNY-LTDLPE-----LPQSLTFLDVSENIF-SGLS----------ELPPNLYYLNASSNE-IRSLCD------------ 314 (454)
T ss_dssp CSSC-CSCCCC-----CCTTCCEEECCSSCC-SEES----------CCCTTCCEEECCSSC-CSEECC------------
T ss_pred CCCc-ccccCc-----ccCcCCEEECcCCcc-Cccc----------CcCCcCCEEECcCCc-CCcccC------------
Confidence 7763 555543 246777777777642 2111 013567777776663 222111
Q ss_pred hhhHhhhccccCCCCccccccccccccceEeecccccceeccCCccccccccCCcccEEEEecCccccccccchhHhhhc
Q 037851 889 NEIILENESQLHTPSSLFNVKLVLPNLEVLEVRDLNVAKIWHNQFSAAMSCNVQNLTRLVVLDCHKLRYVFSYSTAKRLG 968 (1053)
Q Consensus 889 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~l~~l~ 968 (1053)
..++|++|++++|.+..++. .+++|+.|++++| +++.++. .++
T Consensus 315 ----------------------~~~~L~~L~Ls~N~l~~lp~---------~~~~L~~L~L~~N-~l~~lp~-----~l~ 357 (454)
T 1jl5_A 315 ----------------------LPPSLEELNVSNNKLIELPA---------LPPRLERLIASFN-HLAEVPE-----LPQ 357 (454)
T ss_dssp ----------------------CCTTCCEEECCSSCCSCCCC---------CCTTCCEEECCSS-CCSCCCC-----CCT
T ss_pred ----------------------CcCcCCEEECCCCccccccc---------cCCcCCEEECCCC-ccccccc-----hhh
Confidence 03578888888887766432 3578888988885 5666532 368
Q ss_pred cCcEEEEecccccc--eeecccCccc-----cCCcccccccCccccccccccccccCCCCccCCCCcceEEEecCCC
Q 037851 969 QLKHLVISRCPLLE--EIVGKEGGVE-----ADPSFVFPQLTILKLSSLPELRAFYPGIHTLECPILTKLEVSFCHK 1038 (1053)
Q Consensus 969 sL~~L~i~~c~~l~--~i~~~~~~~~-----~~~~~~~p~L~~L~l~~c~~L~~l~~~~~~~~~~sL~~L~I~~Cp~ 1038 (1053)
+|+.|++++|+... .++..-.... ......+++|+.|++++++ ++.++. -.++|+.|.+.+|.-
T Consensus 358 ~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~-l~~~~~-----iP~sl~~L~~~~~~~ 428 (454)
T 1jl5_A 358 NLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP-LREFPD-----IPESVEDLRMNSERV 428 (454)
T ss_dssp TCCEEECCSSCCSSCCCCCTTCCEEECCC------------------------------------------------
T ss_pred hccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCc-CCcccc-----chhhHhheeCcCccc
Confidence 89999998886322 2211100000 0001123678888887754 443221 125577777777653
No 33
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.88 E-value=1.3e-21 Score=234.00 Aligned_cols=435 Identities=16% Similarity=0.138 Sum_probs=271.8
Q ss_pred CCceeEEeecCccccCCCcccccCccCcEEEcCCcccCCc--cccCCCCCCcEEEccCCCCccc-chhhhccCCCCeeec
Q 037851 527 TPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDGCELEDI--RVIGELKDLEILSLQGSKIEQL-PREIGQLTQLKLLDL 603 (1053)
Q Consensus 527 ~~~Lr~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~~--~~i~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l 603 (1053)
+...++++++++.++.+|..+. .+|++|++++|.+..+ ..++++++|++|++++|.+..+ |..++++++|++|++
T Consensus 30 ~~~~~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 107 (562)
T 3a79_B 30 NELESMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV 107 (562)
T ss_dssp ---CCEEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred cCCCcEEEcCCCCCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence 4445899999999999998765 8999999999999883 6899999999999999999987 667999999999999
Q ss_pred cCcccccccCcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCCeEEEEeccCCCCCCccccccC--c
Q 037851 604 SNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLEINILDAGILPSGFFSRKL--K 681 (1053)
Q Consensus 604 ~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~L--~ 681 (1053)
++ +.+..+|.. .+++|++|++++|.+. ....+..++++++|+.|+++.+......- ....+| +
T Consensus 108 s~-N~l~~lp~~---~l~~L~~L~Ls~N~l~----------~l~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~L~L~ 172 (562)
T 3a79_B 108 SH-NRLQNISCC---PMASLRHLDLSFNDFD----------VLPVCKEFGNLTKLTFLGLSAAKFRQLDL-LPVAHLHLS 172 (562)
T ss_dssp TT-SCCCEECSC---CCTTCSEEECCSSCCS----------BCCCCGGGGGCTTCCEEEEECSBCCTTTT-GGGTTSCEE
T ss_pred CC-CcCCccCcc---ccccCCEEECCCCCcc----------ccCchHhhcccCcccEEecCCCccccCch-hhhhhceee
Confidence 99 578888764 8999999999999872 11234678899999999999887543211 112445 7
Q ss_pred eEEEEEccc--CCC-CCccccc--ceeee--ccCCccc-ccccc--ccCccceeeccccCC----ccccccccccccccc
Q 037851 682 RYRIVVGFQ--WAP-FDKYKTR--RTLKL--KLNSRIC-LEEWR--GMKNVEYLRLDELPG----LTNVLHDLDGEGFAE 747 (1053)
Q Consensus 682 ~l~l~~~~~--~~~-~~~~~~l--~~l~l--~~~~~~~-~~~~~--~l~~L~~L~L~~~~~----~~~~~~~l~~~~l~~ 747 (1053)
.+.+..+.. ... ......+ +.+.+ ..+.... .+... .+++|+.|++.++.. .....+.+ ..+++
T Consensus 173 ~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l--~~l~~ 250 (562)
T 3a79_B 173 CILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSEL--TRGPT 250 (562)
T ss_dssp EEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHH--HSCSS
T ss_pred EEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHH--hccCc
Confidence 777655432 100 0111111 12222 2221111 11111 466677777765421 11111222 35567
Q ss_pred ccEEEeecCCCceeecCCcc---cccCcCCccceeecccccccccccccccCccccCCccEEeEccCCCcc-ccCCchhh
Q 037851 748 LKHLNVKNNSNFLCIVDPLQ---VRCGAFPMLESLVLQNLINLERICHGQLRAESFCNLKTIKVGSCHKLK-NLFSFSIA 823 (1053)
Q Consensus 748 L~~L~l~~~~~l~~i~~~~~---~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L~i~~c~~l~-~l~~~~~~ 823 (1053)
|+.|++.++. +.+... ......++|+.|+++++.--..++...+.. ..++|+.|.+.++..-. .+|. ..+
T Consensus 251 L~~L~L~~~~----l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~-~~~~L~~L~~~~~~~~~~~~p~-~~~ 324 (562)
T 3a79_B 251 LLNVTLQHIE----TTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTY-SETALKSLMIEHVKNQVFLFSK-EAL 324 (562)
T ss_dssp CEEEEEEEEE----ECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCC-CSCSCCEEEEEEEEECCCSSCH-HHH
T ss_pred ceEEEecCCc----CcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhc-ccccchheehhhcccceeecCh-hhh
Confidence 7777776553 110000 001123478888888754222332222111 12555555554432111 2221 112
Q ss_pred hc---cCCccEEEecccchhhhHhhcCcccccccccccccceEecCCCcccccccccccccccccchhhhhHhhhccccC
Q 037851 824 KF---LPQLKTIEVTECKIVEEIFVSSNEEAIGEIALAQVRSLILRTLPLLASFSAFVKTTSTVEAKHNEIILENESQLH 900 (1053)
Q Consensus 824 ~~---l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~si~~~~~~~~~l~~~~~~~~~~~~~~~~ 900 (1053)
.. -++|++|++++|....... ...+++|++|+++++.--..++..
T Consensus 325 ~~~~~~~~L~~L~l~~n~~~~~~~---------~~~l~~L~~L~l~~n~l~~~~~~~----------------------- 372 (562)
T 3a79_B 325 YSVFAEMNIKMLSISDTPFIHMVC---------PPSPSSFTFLNFTQNVFTDSVFQG----------------------- 372 (562)
T ss_dssp HHHHHTCCCSEEEEESSCCCCCCC---------CSSCCCCCEEECCSSCCCTTTTTT-----------------------
T ss_pred hhhhccCcceEEEccCCCcccccC---------ccCCCCceEEECCCCccccchhhh-----------------------
Confidence 22 2568899998885421110 024788999999887533222211
Q ss_pred CCCccccccccccccceEeecccccceeccCCccccccccCCcccEEEEecCccccccccchhHhhhccCcEEEEecccc
Q 037851 901 TPSSLFNVKLVLPNLEVLEVRDLNVAKIWHNQFSAAMSCNVQNLTRLVVLDCHKLRYVFSYSTAKRLGQLKHLVISRCPL 980 (1053)
Q Consensus 901 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~l~~l~sL~~L~i~~c~~ 980 (1053)
...+++|++|++++|.+..+... ...+..+++|+.|+++++ +++...+...+..+++|+.|++++|..
T Consensus 373 --------~~~l~~L~~L~L~~N~l~~~~~~---~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~l~~L~~L~l~~n~l 440 (562)
T 3a79_B 373 --------CSTLKRLQTLILQRNGLKNFFKV---ALMTKNMSSLETLDVSLN-SLNSHAYDRTCAWAESILVLNLSSNML 440 (562)
T ss_dssp --------CCSCSSCCEEECCSSCCCBTTHH---HHTTTTCTTCCEEECTTS-CCBSCCSSCCCCCCTTCCEEECCSSCC
T ss_pred --------hcccCCCCEEECCCCCcCCcccc---hhhhcCCCCCCEEECCCC-cCCCccChhhhcCcccCCEEECCCCCC
Confidence 12289999999999987764321 012357899999999995 455522444567889999999999973
Q ss_pred cceeecccCccccCCcccc-cccCccccccccccccccCCCCccCCCCcceEEEecCCCCccccCC
Q 037851 981 LEEIVGKEGGVEADPSFVF-PQLTILKLSSLPELRAFYPGIHTLECPILTKLEVSFCHKLESFSSE 1045 (1053)
Q Consensus 981 l~~i~~~~~~~~~~~~~~~-p~L~~L~l~~c~~L~~l~~~~~~~~~~sL~~L~I~~Cp~L~~l~~~ 1045 (1053)
-..++ ..+ ++|+.|++++| .++.+|.+.. .+++|++|++++|. |..+|..
T Consensus 441 ~~~~~-----------~~l~~~L~~L~L~~N-~l~~ip~~~~--~l~~L~~L~L~~N~-l~~l~~~ 491 (562)
T 3a79_B 441 TGSVF-----------RCLPPKVKVLDLHNN-RIMSIPKDVT--HLQALQELNVASNQ-LKSVPDG 491 (562)
T ss_dssp CGGGG-----------SSCCTTCSEEECCSS-CCCCCCTTTT--SSCCCSEEECCSSC-CCCCCTT
T ss_pred Ccchh-----------hhhcCcCCEEECCCC-cCcccChhhc--CCCCCCEEECCCCC-CCCCCHH
Confidence 22111 123 69999999987 7889998765 57999999999864 6666654
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.87 E-value=2.1e-21 Score=224.01 Aligned_cols=121 Identities=21% Similarity=0.292 Sum_probs=92.9
Q ss_pred ccCCCceeEEeecCccccCCCcccccCccCcEEEcCCcccCCccccCCCCCCcEEEccCCCCcccchhhhccCCCCeeec
Q 037851 524 FIGTPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDGCELEDIRVIGELKDLEILSLQGSKIEQLPREIGQLTQLKLLDL 603 (1053)
Q Consensus 524 ~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l 603 (1053)
+.++++|++|++++|.+..+| .+..+++|++|++++|.++.++ ++.+++|++|++++|.+..+| ++++++|++|++
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L 113 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNC 113 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEEC
T ss_pred hhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee--cCCCCcCCEEEC
Confidence 456788888888888888776 5788888888888888887764 788888888888888888776 788888888888
Q ss_pred cCcccccccCcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCCeEEEEec
Q 037851 604 SNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLEINIL 666 (1053)
Q Consensus 604 ~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~ 666 (1053)
++| .+..++ ++++++|++|++++|.+. . + .++.+++|+.|+++.+
T Consensus 114 ~~N-~l~~l~---~~~l~~L~~L~l~~N~l~-----------~--l-~l~~l~~L~~L~l~~n 158 (457)
T 3bz5_A 114 DTN-KLTKLD---VSQNPLLTYLNCARNTLT-----------E--I-DVSHNTQLTELDCHLN 158 (457)
T ss_dssp CSS-CCSCCC---CTTCTTCCEEECTTSCCS-----------C--C-CCTTCTTCCEEECTTC
T ss_pred CCC-cCCeec---CCCCCcCCEEECCCCccc-----------e--e-ccccCCcCCEEECCCC
Confidence 884 566663 678888888888888762 1 1 2566777887777655
No 35
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.87 E-value=8e-21 Score=212.58 Aligned_cols=301 Identities=17% Similarity=0.280 Sum_probs=181.4
Q ss_pred cceEEeeccCCCCCCCCCcccccCCCceeEEeecCccccCCCcccccCccCcEEEcCCcccCCccccCCCCCCcEEEccC
Q 037851 503 CSRISLYDNNINSPLKIPDNIFIGTPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDGCELEDIRVIGELKDLEILSLQG 582 (1053)
Q Consensus 503 ~~~l~l~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~~~~i~~l~~L~~L~l~~ 582 (1053)
.+.+.+.++.... ++. +..+++|++|++++|.+..+|. +..+++|++|++++|.+..++.++.+++|++|++++
T Consensus 46 L~~L~l~~~~i~~---~~~--~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~ 119 (347)
T 4fmz_A 46 ITKLVVAGEKVAS---IQG--IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNE 119 (347)
T ss_dssp CSEEECCSSCCCC---CTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTT
T ss_pred ccEEEEeCCcccc---chh--hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcC
Confidence 4555555444332 332 4556666666666666666655 666666666666666666655666666666666666
Q ss_pred CCCcccchhhhccCCCCeeeccCcccccccCcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCCeEE
Q 037851 583 SKIEQLPREIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLE 662 (1053)
Q Consensus 583 ~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~ 662 (1053)
|.+..+|. +..+++|++|++++|..+..+++ +.++++|++|++++|.+. .+..+..+++|+.|+
T Consensus 120 n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~-------------~~~~~~~l~~L~~L~ 183 (347)
T 4fmz_A 120 DNISDISP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVK-------------DVTPIANLTDLYSLS 183 (347)
T ss_dssp SCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCC-------------CCGGGGGCTTCSEEE
T ss_pred CcccCchh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcC-------------CchhhccCCCCCEEE
Confidence 66666654 66666666666666544444322 566666666666666541 111255566666666
Q ss_pred EEeccCCCCCCccccccCceEEEEEcccCCCCCcccccceeeeccCCccccccccccCccceeeccccCCcccccccccc
Q 037851 663 INILDAGILPSGFFSRKLKRYRIVVGFQWAPFDKYKTRRTLKLKLNSRICLEEWRGMKNVEYLRLDELPGLTNVLHDLDG 742 (1053)
Q Consensus 663 i~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~ 742 (1053)
++++....+ +....+++|+.|++.++... ...+ +
T Consensus 184 l~~n~l~~~------------------------------------------~~~~~l~~L~~L~l~~n~l~-~~~~-~-- 217 (347)
T 4fmz_A 184 LNYNQIEDI------------------------------------------SPLASLTSLHYFTAYVNQIT-DITP-V-- 217 (347)
T ss_dssp CTTSCCCCC------------------------------------------GGGGGCTTCCEEECCSSCCC-CCGG-G--
T ss_pred ccCCccccc------------------------------------------ccccCCCccceeecccCCCC-CCch-h--
Confidence 655433222 22225667777777765322 2111 2
Q ss_pred cccccccEEEeecCCCceeecCCcccccCcCCccceeecccccccccccccccCccccCCccEEeEccCCCccccCCchh
Q 037851 743 EGFAELKHLNVKNNSNFLCIVDPLQVRCGAFPMLESLVLQNLINLERICHGQLRAESFCNLKTIKVGSCHKLKNLFSFSI 822 (1053)
Q Consensus 743 ~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~ 822 (1053)
..+++|+.|++++|. +..+.. ...+++|+.|+++++ .+..+. ....+++|+.|++++| .++.++ .
T Consensus 218 ~~~~~L~~L~l~~n~-l~~~~~-----~~~l~~L~~L~l~~n-~l~~~~----~~~~l~~L~~L~l~~n-~l~~~~---~ 282 (347)
T 4fmz_A 218 ANMTRLNSLKIGNNK-ITDLSP-----LANLSQLTWLEIGTN-QISDIN----AVKDLTKLKMLNVGSN-QISDIS---V 282 (347)
T ss_dssp GGCTTCCEEECCSSC-CCCCGG-----GTTCTTCCEEECCSS-CCCCCG----GGTTCTTCCEEECCSS-CCCCCG---G
T ss_pred hcCCcCCEEEccCCc-cCCCcc-----hhcCCCCCEEECCCC-ccCCCh----hHhcCCCcCEEEccCC-ccCCCh---h
Confidence 567788888888775 222211 456788888888875 444431 2356788999999887 466652 4
Q ss_pred hhccCCccEEEecccchhhhHhhcCcccccccccccccceEecCCCcccccccccccccccccchhhhhHhhhccccCCC
Q 037851 823 AKFLPQLKTIEVTECKIVEEIFVSSNEEAIGEIALAQVRSLILRTLPLLASFSAFVKTTSTVEAKHNEIILENESQLHTP 902 (1053)
Q Consensus 823 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~si~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 902 (1053)
+..+++|+.|++++|......+.. ...+++|++|++++|+ ++.++.
T Consensus 283 ~~~l~~L~~L~L~~n~l~~~~~~~-------l~~l~~L~~L~L~~n~-l~~~~~-------------------------- 328 (347)
T 4fmz_A 283 LNNLSQLNSLFLNNNQLGNEDMEV-------IGGLTNLTTLFLSQNH-ITDIRP-------------------------- 328 (347)
T ss_dssp GGGCTTCSEEECCSSCCCGGGHHH-------HHTCTTCSEEECCSSS-CCCCGG--------------------------
T ss_pred hcCCCCCCEEECcCCcCCCcChhH-------hhccccCCEEEccCCc-cccccC--------------------------
Confidence 678899999999998643332211 1247899999999986 333322
Q ss_pred CccccccccccccceEeecccccc
Q 037851 903 SSLFNVKLVLPNLEVLEVRDLNVA 926 (1053)
Q Consensus 903 ~~~~~~~~~~~~L~~L~l~~~~~~ 926 (1053)
...+++|++|++++|.++
T Consensus 329 ------~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 329 ------LASLSKMDSADFANQVIK 346 (347)
T ss_dssp ------GGGCTTCSEESSSCC---
T ss_pred ------hhhhhccceeehhhhccc
Confidence 112889999999988654
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.86 E-value=1.1e-20 Score=221.35 Aligned_cols=135 Identities=20% Similarity=0.358 Sum_probs=98.4
Q ss_pred CCcccccCCCceeEEeecCccccCC-CcccccCccCcEEEcCCcccCC--ccccCCCCCCcEEEccCCCCcccchh-hhc
Q 037851 519 IPDNIFIGTPKLKVLDFTRMRLLSL-PSSIHLLTDLRTLCLDGCELED--IRVIGELKDLEILSLQGSKIEQLPRE-IGQ 594 (1053)
Q Consensus 519 ~~~~~~~~~~~Lr~L~l~~~~~~~l-p~~i~~l~~Lr~L~L~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~lp~~-i~~ 594 (1053)
+|..+ .+.+++|++++|.+..+ |..+.++++|++|+|++|.+.. +..++++++|++|+|++|.+..+|.. +.+
T Consensus 26 ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 102 (477)
T 2id5_A 26 VPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTG 102 (477)
T ss_dssp CCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTT
T ss_pred CCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccC
Confidence 56544 35678888888888766 4567888888888888888776 46788888888888888888877754 577
Q ss_pred cCCCCeeeccCcccccccCcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCCeEEEEeccC
Q 037851 595 LTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLEINILDA 668 (1053)
Q Consensus 595 L~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~ 668 (1053)
+++|++|++++ +.+..+++..+.++++|++|++++|.+. ......+.++++|+.|+++.+..
T Consensus 103 l~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~l~~n~l~-----------~~~~~~~~~l~~L~~L~l~~n~l 164 (477)
T 2id5_A 103 LSNLTKLDISE-NKIVILLDYMFQDLYNLKSLEVGDNDLV-----------YISHRAFSGLNSLEQLTLEKCNL 164 (477)
T ss_dssp CTTCCEEECTT-SCCCEECTTTTTTCTTCCEEEECCTTCC-----------EECTTSSTTCTTCCEEEEESCCC
T ss_pred CCCCCEEECCC-CccccCChhHccccccCCEEECCCCccc-----------eeChhhccCCCCCCEEECCCCcC
Confidence 88888888887 4566666666788888888888877652 22234556677777777776543
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.86 E-value=1.1e-20 Score=214.90 Aligned_cols=131 Identities=18% Similarity=0.302 Sum_probs=102.6
Q ss_pred CCCceeEEeecCccccCCCcc-cccCccCcEEEcCCcccCC--ccccCCCCCCcEEEccCCCCcccc-hhhhccCCCCee
Q 037851 526 GTPKLKVLDFTRMRLLSLPSS-IHLLTDLRTLCLDGCELED--IRVIGELKDLEILSLQGSKIEQLP-REIGQLTQLKLL 601 (1053)
Q Consensus 526 ~~~~Lr~L~l~~~~~~~lp~~-i~~l~~Lr~L~L~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L 601 (1053)
.++++++|+++++.+..+|.. +..+++|++|++++|.+.. +..++.+++|++|++++|.+..+| ..++++++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 467888999999888888875 5788899999999988877 357888899999999999888775 447888999999
Q ss_pred eccCcccccccCcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCCeEEEEeccC
Q 037851 602 DLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLEINILDA 668 (1053)
Q Consensus 602 ~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~ 668 (1053)
++++ +.+..+|+..++++++|++|++++|.+. ......++++++|+.|+++.+..
T Consensus 123 ~L~~-n~l~~l~~~~~~~l~~L~~L~L~~n~l~-----------~~~~~~~~~l~~L~~L~l~~n~l 177 (390)
T 3o6n_A 123 VLER-NDLSSLPRGIFHNTPKLTTLSMSNNNLE-----------RIEDDTFQATTSLQNLQLSSNRL 177 (390)
T ss_dssp ECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCC-----------BCCTTTTSSCTTCCEEECCSSCC
T ss_pred ECCC-CccCcCCHHHhcCCCCCcEEECCCCccC-----------ccChhhccCCCCCCEEECCCCcC
Confidence 9988 4677887776788889999998888762 22334566777888887766543
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.86 E-value=4.1e-20 Score=206.82 Aligned_cols=278 Identities=19% Similarity=0.240 Sum_probs=196.5
Q ss_pred CcceEEeeccCCCCCCCCCcccccCCCceeEEeecCccccCCCcccccCccCcEEEcCCcccCCccccCCCCCCcEEEcc
Q 037851 502 KCSRISLYDNNINSPLKIPDNIFIGTPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDGCELEDIRVIGELKDLEILSLQ 581 (1053)
Q Consensus 502 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~~~~i~~l~~L~~L~l~ 581 (1053)
..+.+.+..+.... ++. |.++++|++|++++|.+..+| .+..+++|++|++++|.+...+.+..+++|++|+++
T Consensus 67 ~L~~L~l~~n~i~~---~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~ 140 (347)
T 4fmz_A 67 NLEYLNLNGNQITD---ISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLG 140 (347)
T ss_dssp TCCEEECCSSCCCC---CGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSCCCCCGGGTTCTTCCEEECT
T ss_pred CccEEEccCCcccc---chh--hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCcccCchhhccCCceeEEECC
Confidence 36778887776554 444 789999999999999999886 589999999999999999987669999999999999
Q ss_pred CCCCcccchhhhccCCCCeeeccCcccccccCcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCCeE
Q 037851 582 GSKIEQLPREIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSL 661 (1053)
Q Consensus 582 ~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L 661 (1053)
+|.....+..+..+++|++|++++| .+..+++ +.++++|++|++++|.+. .+..+..+++|+.|
T Consensus 141 ~n~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~--~~~l~~L~~L~l~~n~l~-------------~~~~~~~l~~L~~L 204 (347)
T 4fmz_A 141 ANHNLSDLSPLSNMTGLNYLTVTES-KVKDVTP--IANLTDLYSLSLNYNQIE-------------DISPLASLTSLHYF 204 (347)
T ss_dssp TCTTCCCCGGGTTCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECTTSCCC-------------CCGGGGGCTTCCEE
T ss_pred CCCCcccccchhhCCCCcEEEecCC-CcCCchh--hccCCCCCEEEccCCccc-------------ccccccCCCcccee
Confidence 9965544456999999999999995 5666654 789999999999999762 23337788899999
Q ss_pred EEEeccCCCCCCccccccCceEEEEEcccCCCCCcccccceeeeccCCccccccccccCccceeeccccCCccccccccc
Q 037851 662 EINILDAGILPSGFFSRKLKRYRIVVGFQWAPFDKYKTRRTLKLKLNSRICLEEWRGMKNVEYLRLDELPGLTNVLHDLD 741 (1053)
Q Consensus 662 ~i~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~ 741 (1053)
+++.+.....+. +..+++|++|+++++... .. +.+
T Consensus 205 ~l~~n~l~~~~~------------------------------------------~~~~~~L~~L~l~~n~l~-~~-~~~- 239 (347)
T 4fmz_A 205 TAYVNQITDITP------------------------------------------VANMTRLNSLKIGNNKIT-DL-SPL- 239 (347)
T ss_dssp ECCSSCCCCCGG------------------------------------------GGGCTTCCEEECCSSCCC-CC-GGG-
T ss_pred ecccCCCCCCch------------------------------------------hhcCCcCCEEEccCCccC-CC-cch-
Confidence 888765443321 114566666666665332 11 112
Q ss_pred ccccccccEEEeecCCCceeecCCcccccCcCCccceeecccccccccccccccCccccCCccEEeEccCCCccccCCch
Q 037851 742 GEGFAELKHLNVKNNSNFLCIVDPLQVRCGAFPMLESLVLQNLINLERICHGQLRAESFCNLKTIKVGSCHKLKNLFSFS 821 (1053)
Q Consensus 742 ~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~ 821 (1053)
..+++|+.|++++|. +..+ .....+++|+.|+++++ .+..++ ....+++|+.|++++|. +...++ .
T Consensus 240 -~~l~~L~~L~l~~n~-l~~~-----~~~~~l~~L~~L~l~~n-~l~~~~----~~~~l~~L~~L~L~~n~-l~~~~~-~ 305 (347)
T 4fmz_A 240 -ANLSQLTWLEIGTNQ-ISDI-----NAVKDLTKLKMLNVGSN-QISDIS----VLNNLSQLNSLFLNNNQ-LGNEDM-E 305 (347)
T ss_dssp -TTCTTCCEEECCSSC-CCCC-----GGGTTCTTCCEEECCSS-CCCCCG----GGGGCTTCSEEECCSSC-CCGGGH-H
T ss_pred -hcCCCCCEEECCCCc-cCCC-----hhHhcCCCcCEEEccCC-ccCCCh----hhcCCCCCCEEECcCCc-CCCcCh-h
Confidence 566777777777764 2222 12446677777777775 444431 13467888888888874 444432 3
Q ss_pred hhhccCCccEEEecccchhhhHhhcCcccccccccccccceEecCCCc
Q 037851 822 IAKFLPQLKTIEVTECKIVEEIFVSSNEEAIGEIALAQVRSLILRTLP 869 (1053)
Q Consensus 822 ~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 869 (1053)
.+..+++|++|++++|+.....+ ...+++|++|++.+|+
T Consensus 306 ~l~~l~~L~~L~L~~n~l~~~~~---------~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 306 VIGGLTNLTTLFLSQNHITDIRP---------LASLSKMDSADFANQV 344 (347)
T ss_dssp HHHTCTTCSEEECCSSSCCCCGG---------GGGCTTCSEESSSCC-
T ss_pred HhhccccCCEEEccCCccccccC---------hhhhhccceeehhhhc
Confidence 46678888888888876332222 1247788888887775
No 39
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.85 E-value=1.2e-20 Score=217.64 Aligned_cols=143 Identities=21% Similarity=0.232 Sum_probs=119.1
Q ss_pred cceEEeeccCCCCCCCCCcccccCCCceeEEeecCccccCCCcccccCccCcEEEcCCcccCCccccCCCCCCcEEEccC
Q 037851 503 CSRISLYDNNINSPLKIPDNIFIGTPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDGCELEDIRVIGELKDLEILSLQG 582 (1053)
Q Consensus 503 ~~~l~l~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~~~~i~~l~~L~~L~l~~ 582 (1053)
.+.+.+..+...+ +| .+..+++|++|++++|.+..+| ++.+++|++|++++|.+..++ ++.+++|++|++++
T Consensus 44 L~~L~Ls~n~l~~---~~--~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~ 115 (457)
T 3bz5_A 44 LTSLDCHNSSITD---MT--GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCDT 115 (457)
T ss_dssp CCEEECCSSCCCC---CT--TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECCS
T ss_pred CCEEEccCCCccc---Ch--hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee-cCCCCcCCEEECCC
Confidence 5677777766554 44 2678999999999999999886 899999999999999998864 99999999999999
Q ss_pred CCCcccchhhhccCCCCeeeccCcccccccCcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCCeEE
Q 037851 583 SKIEQLPREIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLE 662 (1053)
Q Consensus 583 ~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~ 662 (1053)
|.+..+| ++++++|++|++++ +.+..++ ++++++|++|++++|... . .+ .+..+++|+.|+
T Consensus 116 N~l~~l~--~~~l~~L~~L~l~~-N~l~~l~---l~~l~~L~~L~l~~n~~~-----------~-~~-~~~~l~~L~~L~ 176 (457)
T 3bz5_A 116 NKLTKLD--VSQNPLLTYLNCAR-NTLTEID---VSHNTQLTELDCHLNKKI-----------T-KL-DVTPQTQLTTLD 176 (457)
T ss_dssp SCCSCCC--CTTCTTCCEEECTT-SCCSCCC---CTTCTTCCEEECTTCSCC-----------C-CC-CCTTCTTCCEEE
T ss_pred CcCCeec--CCCCCcCCEEECCC-Cccceec---cccCCcCCEEECCCCCcc-----------c-cc-ccccCCcCCEEE
Confidence 9999987 89999999999999 4677763 789999999999998531 1 11 467889999999
Q ss_pred EEeccCCCCC
Q 037851 663 INILDAGILP 672 (1053)
Q Consensus 663 i~~~~~~~~~ 672 (1053)
++.+....++
T Consensus 177 ls~n~l~~l~ 186 (457)
T 3bz5_A 177 CSFNKITELD 186 (457)
T ss_dssp CCSSCCCCCC
T ss_pred CCCCccceec
Confidence 9887655543
No 40
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.85 E-value=1.5e-20 Score=213.78 Aligned_cols=302 Identities=15% Similarity=0.178 Sum_probs=226.3
Q ss_pred CcceEEeeccCCCCCCCCCcccccCCCceeEEeecCccccCCCc-ccccCccCcEEEcCCcccCC--ccccCCCCCCcEE
Q 037851 502 KCSRISLYDNNINSPLKIPDNIFIGTPKLKVLDFTRMRLLSLPS-SIHLLTDLRTLCLDGCELED--IRVIGELKDLEIL 578 (1053)
Q Consensus 502 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~-~i~~l~~Lr~L~L~~~~~~~--~~~i~~l~~L~~L 578 (1053)
..+.+.+..+.... +|..+|.++++|++|++++|.+..+|. .+..+++|++|++++|.+.. +..++.+++|++|
T Consensus 46 ~l~~l~l~~~~l~~---l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 46 NQKIVTFKNSTMRK---LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp CCSEEEEESCEESE---ECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CceEEEecCCchhh---CChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 46778877665443 888888999999999999999998765 79999999999999999887 3568999999999
Q ss_pred EccCCCCcccchhh-hccCCCCeeeccCcccccccCcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCC
Q 037851 579 SLQGSKIEQLPREI-GQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSR 657 (1053)
Q Consensus 579 ~l~~~~l~~lp~~i-~~L~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~ 657 (1053)
++++|.+..+|..+ +++++|++|++++ +.+..+++..++++++|++|++++|.+. .. .++.+++
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~-----------~~---~~~~l~~ 187 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSN-NNLERIEDDTFQATTSLQNLQLSSNRLT-----------HV---DLSLIPS 187 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTSSCTTCCEEECCSSCCS-----------BC---CGGGCTT
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCC-CccCccChhhccCCCCCCEEECCCCcCC-----------cc---ccccccc
Confidence 99999999999875 8999999999999 5788888888999999999999999872 11 3566788
Q ss_pred CCeEEEEeccCCCCCCccccccCceEEEEEcccCCCCCcccccceeeeccCCccccccccccCccceeeccccCCccccc
Q 037851 658 LTSLEINILDAGILPSGFFSRKLKRYRIVVGFQWAPFDKYKTRRTLKLKLNSRICLEEWRGMKNVEYLRLDELPGLTNVL 737 (1053)
Q Consensus 658 L~~L~i~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~ 737 (1053)
|+.|+++.+....++ ....++.+++..+....++.. .+++|+.|++.++.-.. .
T Consensus 188 L~~L~l~~n~l~~~~-----------------------~~~~L~~L~l~~n~l~~~~~~-~~~~L~~L~l~~n~l~~--~ 241 (390)
T 3o6n_A 188 LFHANVSYNLLSTLA-----------------------IPIAVEELDASHNSINVVRGP-VNVELTILKLQHNNLTD--T 241 (390)
T ss_dssp CSEEECCSSCCSEEE-----------------------CCSSCSEEECCSSCCCEEECC-CCSSCCEEECCSSCCCC--C
T ss_pred cceeecccccccccC-----------------------CCCcceEEECCCCeeeecccc-ccccccEEECCCCCCcc--c
Confidence 999988766433221 122445555555544433332 45789999998865332 2
Q ss_pred ccccccccccccEEEeecCCCceeecCCcccccCcCCccceeecccccccccccccccCccccCCccEEeEccCCCcccc
Q 037851 738 HDLDGEGFAELKHLNVKNNSNFLCIVDPLQVRCGAFPMLESLVLQNLINLERICHGQLRAESFCNLKTIKVGSCHKLKNL 817 (1053)
Q Consensus 738 ~~l~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L~i~~c~~l~~l 817 (1053)
+.+ ..+++|+.|++++|. +..+. ......+++|+.|+++++ .++.++ .....+++|+.|++++| ++..+
T Consensus 242 ~~l--~~l~~L~~L~Ls~n~-l~~~~---~~~~~~l~~L~~L~L~~n-~l~~~~---~~~~~l~~L~~L~L~~n-~l~~~ 310 (390)
T 3o6n_A 242 AWL--LNYPGLVEVDLSYNE-LEKIM---YHPFVKMQRLERLYISNN-RLVALN---LYGQPIPTLKVLDLSHN-HLLHV 310 (390)
T ss_dssp GGG--GGCTTCSEEECCSSC-CCEEE---SGGGTTCSSCCEEECCSS-CCCEEE---CSSSCCTTCCEEECCSS-CCCCC
T ss_pred HHH--cCCCCccEEECCCCc-CCCcC---hhHccccccCCEEECCCC-cCcccC---cccCCCCCCCEEECCCC-cceec
Confidence 333 678999999999885 32221 222456889999999984 566553 22356899999999998 47776
Q ss_pred CCchhhhccCCccEEEecccchhhhHhhcCcccccccccccccceEecCCCcc
Q 037851 818 FSFSIAKFLPQLKTIEVTECKIVEEIFVSSNEEAIGEIALAQVRSLILRTLPL 870 (1053)
Q Consensus 818 ~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 870 (1053)
++ .+..+++|+.|++++|.. ..++ ...+++|++|++.+++-
T Consensus 311 ~~--~~~~l~~L~~L~L~~N~i-~~~~---------~~~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 311 ER--NQPQFDRLENLYLDHNSI-VTLK---------LSTHHTLKNLTLSHNDW 351 (390)
T ss_dssp GG--GHHHHTTCSEEECCSSCC-CCCC---------CCTTCCCSEEECCSSCE
T ss_pred Cc--cccccCcCCEEECCCCcc-ceeC---------chhhccCCEEEcCCCCc
Confidence 54 367889999999999863 2221 22488999999998863
No 41
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.85 E-value=1.3e-20 Score=217.20 Aligned_cols=235 Identities=20% Similarity=0.153 Sum_probs=148.0
Q ss_pred eeEEeecCccccCCCcccccCccCcEEEcCCcccCCccccCCCCCCcEEEccCCCCcccchhhhccCCCCeeeccCcccc
Q 037851 530 LKVLDFTRMRLLSLPSSIHLLTDLRTLCLDGCELEDIRVIGELKDLEILSLQGSKIEQLPREIGQLTQLKLLDLSNCSKL 609 (1053)
Q Consensus 530 Lr~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l 609 (1053)
++.|++++|.+..+|.. ..+|++|++++|.+..++. .+.+|++|++++|.+..+|.. .++|++|++++| .+
T Consensus 73 l~~L~l~~~~l~~lp~~---~~~L~~L~l~~n~l~~lp~--~~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n-~l 143 (454)
T 1jl5_A 73 AHELELNNLGLSSLPEL---PPHLESLVASCNSLTELPE--LPQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNN-QL 143 (454)
T ss_dssp CSEEECTTSCCSCCCSC---CTTCSEEECCSSCCSSCCC--CCTTCCEEECCSSCCSCCCSC---CTTCCEEECCSS-CC
T ss_pred CCEEEecCCccccCCCC---cCCCCEEEccCCcCCcccc--ccCCCcEEECCCCccCcccCC---CCCCCEEECcCC-CC
Confidence 49999999999998873 4789999999999988443 348999999999999988742 279999999995 67
Q ss_pred cccCcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCCeEEEEeccCCCCCCccccccCceEEEEEcc
Q 037851 610 KVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLEINILDAGILPSGFFSRKLKRYRIVVGF 689 (1053)
Q Consensus 610 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~L~~l~l~~~~ 689 (1053)
..+| . ++++++|++|++++|.+.. ... ...+|+.|+++.+....+|......+|+.|.+
T Consensus 144 ~~lp-~-~~~l~~L~~L~l~~N~l~~------------lp~---~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l---- 202 (454)
T 1jl5_A 144 EKLP-E-LQNSSFLKIIDVDNNSLKK------------LPD---LPPSLEFIAAGNNQLEELPELQNLPFLTAIYA---- 202 (454)
T ss_dssp SSCC-C-CTTCTTCCEEECCSSCCSC------------CCC---CCTTCCEEECCSSCCSSCCCCTTCTTCCEEEC----
T ss_pred CCCc-c-cCCCCCCCEEECCCCcCcc------------cCC---CcccccEEECcCCcCCcCccccCCCCCCEEEC----
Confidence 7776 3 8999999999999998731 111 12489999999888776663222244544444
Q ss_pred cCCCCCcccccceeeeccCCccccccccccCccceeeccccCCcccccccccccccccccEEEeecCCCceeecCCcccc
Q 037851 690 QWAPFDKYKTRRTLKLKLNSRICLEEWRGMKNVEYLRLDELPGLTNVLHDLDGEGFAELKHLNVKNNSNFLCIVDPLQVR 769 (1053)
Q Consensus 690 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~i~~~~~~~ 769 (1053)
..+....+|. ..++|++|+++++.-. . ++.+ +.+++|+.|++++|. +..+.
T Consensus 203 ----------------~~N~l~~l~~--~~~~L~~L~l~~n~l~-~-lp~~--~~l~~L~~L~l~~N~-l~~l~------ 253 (454)
T 1jl5_A 203 ----------------DNNSLKKLPD--LPLSLESIVAGNNILE-E-LPEL--QNLPFLTTIYADNNL-LKTLP------ 253 (454)
T ss_dssp ----------------CSSCCSSCCC--CCTTCCEEECCSSCCS-S-CCCC--TTCTTCCEEECCSSC-CSSCC------
T ss_pred ----------------CCCcCCcCCC--CcCcccEEECcCCcCC-c-cccc--CCCCCCCEEECCCCc-CCccc------
Confidence 3333222222 1245666666654322 1 2322 456666666666653 22111
Q ss_pred cCcCCccceeecccccccccccccccCccccCCccEEeEccCCCccccCCchhhhccCCccEEEeccc
Q 037851 770 CGAFPMLESLVLQNLINLERICHGQLRAESFCNLKTIKVGSCHKLKNLFSFSIAKFLPQLKTIEVTEC 837 (1053)
Q Consensus 770 ~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~l~~c 837 (1053)
..+++|+.|+++++ .++.++ ..+++|+.|++++|. ++.++. ..++|+.|++++|
T Consensus 254 -~~~~~L~~L~l~~N-~l~~l~------~~~~~L~~L~ls~N~-l~~l~~-----~~~~L~~L~l~~N 307 (454)
T 1jl5_A 254 -DLPPSLEALNVRDN-YLTDLP------ELPQSLTFLDVSENI-FSGLSE-----LPPNLYYLNASSN 307 (454)
T ss_dssp -SCCTTCCEEECCSS-CCSCCC------CCCTTCCEEECCSSC-CSEESC-----CCTTCCEEECCSS
T ss_pred -ccccccCEEECCCC-cccccC------cccCcCCEEECcCCc-cCcccC-----cCCcCCEEECcCC
Confidence 12356666666653 233321 123566666666653 444322 1246666666665
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.84 E-value=2.8e-20 Score=223.57 Aligned_cols=301 Identities=16% Similarity=0.191 Sum_probs=201.5
Q ss_pred cceEEeeccCCCCCCCCCcccccCCCceeEEeecCccccCCCc-ccccCccCcEEEcCCcccCC--ccccCCCCCCcEEE
Q 037851 503 CSRISLYDNNINSPLKIPDNIFIGTPKLKVLDFTRMRLLSLPS-SIHLLTDLRTLCLDGCELED--IRVIGELKDLEILS 579 (1053)
Q Consensus 503 ~~~l~l~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~-~i~~l~~Lr~L~L~~~~~~~--~~~i~~l~~L~~L~ 579 (1053)
.+.+.+..+... .+|+.+|.++++|++|++++|.+..+|+ .++.+++|++|+|++|.+.. +..++.+++|++|+
T Consensus 53 l~~l~l~~~~l~---~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 53 QKIVTFKNSTMR---KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp CSEEEESSCEES---EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred ceEEEeeCCCCC---CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 445555444333 2677777778888888888888776654 67788888888888888776 34567888888888
Q ss_pred ccCCCCcccchhh-hccCCCCeeeccCcccccccCcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCC
Q 037851 580 LQGSKIEQLPREI-GQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRL 658 (1053)
Q Consensus 580 l~~~~l~~lp~~i-~~L~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L 658 (1053)
|++|.+..+|..+ +++++|++|++++| .+..+++..++++++|++|++++|.+. .. .++.+++|
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~-----------~~---~~~~l~~L 194 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLT-----------HV---DLSLIPSL 194 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECTTSCCS-----------BC---CGGGCTTC
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCC-cCCCCChhhhhcCCcCcEEECcCCCCC-----------Cc---Chhhhhhh
Confidence 8888888777664 77888888888874 566777766778888888888877662 11 24556677
Q ss_pred CeEEEEeccCCCCCCccccccCceEEEEEcccCCCCCcccccceeeeccCCccccccccccCccceeeccccCCcccccc
Q 037851 659 TSLEINILDAGILPSGFFSRKLKRYRIVVGFQWAPFDKYKTRRTLKLKLNSRICLEEWRGMKNVEYLRLDELPGLTNVLH 738 (1053)
Q Consensus 659 ~~L~i~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~ 738 (1053)
+.|+++++....+ ..+..++.+++..+....++.. ..++|+.|+++++.... .+
T Consensus 195 ~~L~l~~n~l~~l-----------------------~~~~~L~~L~ls~n~l~~~~~~-~~~~L~~L~L~~n~l~~--~~ 248 (597)
T 3oja_B 195 FHANVSYNLLSTL-----------------------AIPIAVEELDASHNSINVVRGP-VNVELTILKLQHNNLTD--TA 248 (597)
T ss_dssp SEEECCSSCCSEE-----------------------ECCTTCSEEECCSSCCCEEECS-CCSCCCEEECCSSCCCC--CG
T ss_pred hhhhcccCccccc-----------------------cCCchhheeeccCCcccccccc-cCCCCCEEECCCCCCCC--Ch
Confidence 7777765543221 1223455566655544443332 34688888888864322 22
Q ss_pred cccccccccccEEEeecCCCceeecCCcccccCcCCccceeecccccccccccccccCccccCCccEEeEccCCCccccC
Q 037851 739 DLDGEGFAELKHLNVKNNSNFLCIVDPLQVRCGAFPMLESLVLQNLINLERICHGQLRAESFCNLKTIKVGSCHKLKNLF 818 (1053)
Q Consensus 739 ~l~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~ 818 (1053)
.+ ..+++|+.|++++|. +..+ .....+.+++|+.|+++++ .+..++ .....+++|+.|++++|. +..+|
T Consensus 249 ~l--~~l~~L~~L~Ls~N~-l~~~---~~~~~~~l~~L~~L~Ls~N-~l~~l~---~~~~~l~~L~~L~Ls~N~-l~~i~ 317 (597)
T 3oja_B 249 WL--LNYPGLVEVDLSYNE-LEKI---MYHPFVKMQRLERLYISNN-RLVALN---LYGQPIPTLKVLDLSHNH-LLHVE 317 (597)
T ss_dssp GG--GGCTTCSEEECCSSC-CCEE---ESGGGTTCSSCCEEECTTS-CCCEEE---CSSSCCTTCCEEECCSSC-CCCCG
T ss_pred hh--ccCCCCCEEECCCCc-cCCC---CHHHhcCccCCCEEECCCC-CCCCCC---cccccCCCCcEEECCCCC-CCccC
Confidence 33 578899999998876 2222 1223457888999999884 555553 223568899999998874 66665
Q ss_pred CchhhhccCCccEEEecccchhhhHhhcCcccccccccccccceEecCCCcc
Q 037851 819 SFSIAKFLPQLKTIEVTECKIVEEIFVSSNEEAIGEIALAQVRSLILRTLPL 870 (1053)
Q Consensus 819 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 870 (1053)
+ .+..+++|+.|++++|... .++ ...+++|+.|++.+++-
T Consensus 318 ~--~~~~l~~L~~L~L~~N~l~-~~~---------~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 318 R--NQPQFDRLENLYLDHNSIV-TLK---------LSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp G--GHHHHTTCSEEECCSSCCC-CCC---------CCTTCCCSEEECCSSCE
T ss_pred c--ccccCCCCCEEECCCCCCC-CcC---------hhhcCCCCEEEeeCCCC
Confidence 4 3577899999999998642 221 22478899999988863
No 43
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.84 E-value=5e-20 Score=221.34 Aligned_cols=132 Identities=18% Similarity=0.299 Sum_probs=113.3
Q ss_pred CCCceeEEeecCccccCCCcc-cccCccCcEEEcCCcccCC--ccccCCCCCCcEEEccCCCCcccchh-hhccCCCCee
Q 037851 526 GTPKLKVLDFTRMRLLSLPSS-IHLLTDLRTLCLDGCELED--IRVIGELKDLEILSLQGSKIEQLPRE-IGQLTQLKLL 601 (1053)
Q Consensus 526 ~~~~Lr~L~l~~~~~~~lp~~-i~~l~~Lr~L~L~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L 601 (1053)
.+.++++|+++++.+..+|+. +..+++|++|++++|.+.. +..++.+++|++|+|++|.+..+|.. ++++++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 467899999999999999875 6789999999999999988 35899999999999999999988754 6999999999
Q ss_pred eccCcccccccCcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCCeEEEEeccCC
Q 037851 602 DLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLEINILDAG 669 (1053)
Q Consensus 602 ~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~ 669 (1053)
++++ +.+..+|+..++++++|++|++++|.+. ......++++++|+.|+++++...
T Consensus 129 ~L~~-n~l~~l~~~~~~~l~~L~~L~Ls~N~l~-----------~~~~~~~~~l~~L~~L~L~~N~l~ 184 (597)
T 3oja_B 129 VLER-NDLSSLPRGIFHNTPKLTTLSMSNNNLE-----------RIEDDTFQATTSLQNLQLSSNRLT 184 (597)
T ss_dssp ECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCC-----------BCCTTTTTTCTTCCEEECTTSCCS
T ss_pred EeeC-CCCCCCCHHHhccCCCCCEEEeeCCcCC-----------CCChhhhhcCCcCcEEECcCCCCC
Confidence 9999 4788898887899999999999999872 334456788899999988776543
No 44
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.83 E-value=1.8e-19 Score=210.96 Aligned_cols=295 Identities=21% Similarity=0.280 Sum_probs=192.6
Q ss_pred CcceEEeeccCCCCCCCCCcccccCCCceeEEeecCccccCC-CcccccCccCcEEEcCCcccCCc--cccCCCCCCcEE
Q 037851 502 KCSRISLYDNNINSPLKIPDNIFIGTPKLKVLDFTRMRLLSL-PSSIHLLTDLRTLCLDGCELEDI--RVIGELKDLEIL 578 (1053)
Q Consensus 502 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~l-p~~i~~l~~Lr~L~L~~~~~~~~--~~i~~l~~L~~L 578 (1053)
..+.+.+..+.... +++..|.++++|++|++++|.+..+ |..+.++++|++|+|++|.+..+ ..++++++|++|
T Consensus 33 ~l~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 109 (477)
T 2id5_A 33 ETRLLDLGKNRIKT---LNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKL 109 (477)
T ss_dssp TCSEEECCSSCCCE---ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEE
T ss_pred CCcEEECCCCccce---ECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEE
Confidence 47888888776654 6666788999999999999999876 77899999999999999999883 458999999999
Q ss_pred EccCCCCccc-chhhhccCCCCeeeccCcccccccCcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCC
Q 037851 579 SLQGSKIEQL-PREIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSR 657 (1053)
Q Consensus 579 ~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~ 657 (1053)
++++|.+..+ |..+.++++|++|++++ +.+..+++..+.++++|++|++++|.+ .......+.++++
T Consensus 110 ~Ls~n~i~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l-----------~~~~~~~l~~l~~ 177 (477)
T 2id5_A 110 DISENKIVILLDYMFQDLYNLKSLEVGD-NDLVYISHRAFSGLNSLEQLTLEKCNL-----------TSIPTEALSHLHG 177 (477)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEEECC-TTCCEECTTSSTTCTTCCEEEEESCCC-----------SSCCHHHHTTCTT
T ss_pred ECCCCccccCChhHccccccCCEEECCC-CccceeChhhccCCCCCCEEECCCCcC-----------cccChhHhcccCC
Confidence 9999999866 56789999999999999 578888787899999999999999987 2334456888999
Q ss_pred CCeEEEEeccCCCCCCccccccCceEEEEEcccCCCCCcccccceeeeccCCccccccccccCccceeeccccCCccccc
Q 037851 658 LTSLEINILDAGILPSGFFSRKLKRYRIVVGFQWAPFDKYKTRRTLKLKLNSRICLEEWRGMKNVEYLRLDELPGLTNVL 737 (1053)
Q Consensus 658 L~~L~i~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~ 737 (1053)
|+.|+++.+....++...+ ..+++|+.|+++++.......
T Consensus 178 L~~L~l~~n~i~~~~~~~~----------------------------------------~~l~~L~~L~l~~~~~~~~~~ 217 (477)
T 2id5_A 178 LIVLRLRHLNINAIRDYSF----------------------------------------KRLYRLKVLEISHWPYLDTMT 217 (477)
T ss_dssp CCEEEEESCCCCEECTTCS----------------------------------------CSCTTCCEEEEECCTTCCEEC
T ss_pred CcEEeCCCCcCcEeChhhc----------------------------------------ccCcccceeeCCCCccccccC
Confidence 9999998876543332111 134455555555544333222
Q ss_pred ccccccccccccEEEeecCCCceeecCCcccccCcCCccceeecccccccccccccccCccccCCccEEeEccCCCcccc
Q 037851 738 HDLDGEGFAELKHLNVKNNSNFLCIVDPLQVRCGAFPMLESLVLQNLINLERICHGQLRAESFCNLKTIKVGSCHKLKNL 817 (1053)
Q Consensus 738 ~~l~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L~i~~c~~l~~l 817 (1053)
+.. ....+|+.|++++|. +..+. ......+++|+.|+++++ .+..+.... ...+++|+.|++.++. +..+
T Consensus 218 ~~~--~~~~~L~~L~l~~n~-l~~~~---~~~~~~l~~L~~L~Ls~n-~l~~~~~~~--~~~l~~L~~L~L~~n~-l~~~ 287 (477)
T 2id5_A 218 PNC--LYGLNLTSLSITHCN-LTAVP---YLAVRHLVYLRFLNLSYN-PISTIEGSM--LHELLRLQEIQLVGGQ-LAVV 287 (477)
T ss_dssp TTT--TTTCCCSEEEEESSC-CCSCC---HHHHTTCTTCCEEECCSS-CCCEECTTS--CTTCTTCCEEECCSSC-CSEE
T ss_pred ccc--ccCccccEEECcCCc-ccccC---HHHhcCccccCeeECCCC-cCCccChhh--ccccccCCEEECCCCc-cceE
Confidence 221 122356666666553 22111 011334556666666653 233332211 2345666666666552 4444
Q ss_pred CCchhhhccCCccEEEecccchhhhHhhcCcccccccccccccceEecCCCc
Q 037851 818 FSFSIAKFLPQLKTIEVTECKIVEEIFVSSNEEAIGEIALAQVRSLILRTLP 869 (1053)
Q Consensus 818 ~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 869 (1053)
.+ ..+..+++|+.|++++|. +..++... ...+++|++|++.++|
T Consensus 288 ~~-~~~~~l~~L~~L~L~~N~-l~~~~~~~------~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 288 EP-YAFRGLNYLRVLNVSGNQ-LTTLEESV------FHSVGNLETLILDSNP 331 (477)
T ss_dssp CT-TTBTTCTTCCEEECCSSC-CSCCCGGG------BSCGGGCCEEECCSSC
T ss_pred CH-HHhcCcccCCEEECCCCc-CceeCHhH------cCCCcccCEEEccCCC
Confidence 32 234556666666666652 22221110 1135566666666654
No 45
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.81 E-value=5.2e-19 Score=195.01 Aligned_cols=223 Identities=22% Similarity=0.336 Sum_probs=154.8
Q ss_pred CCCceeEEeecCccccCCCcccccCccCcEEEcCCcccCC-ccccCCCCCCcEEEccCCCCcccchhhhccCCCCeeecc
Q 037851 526 GTPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDGCELED-IRVIGELKDLEILSLQGSKIEQLPREIGQLTQLKLLDLS 604 (1053)
Q Consensus 526 ~~~~Lr~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~ 604 (1053)
....++.|+++++.+..+|+.+.++++|++|++++|.+.. |..++++++|++|++++|.+..+|..++++++|++|+++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence 3578899999999999999999999999999999999887 677999999999999999999999999999999999999
Q ss_pred CcccccccCcchhc---------CCccCceeecccccccccccCCcccccCCChhhhcCCCCCCeEEEEeccCCCCCCcc
Q 037851 605 NCSKLKVIAPNVLS---------NLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLEINILDAGILPSGF 675 (1053)
Q Consensus 605 ~~~~l~~~~~~~l~---------~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~ 675 (1053)
+|+.+..+|.. ++ ++++|++|++++|.+. ..+..++++++|+.|+++++....++..
T Consensus 159 ~n~~~~~~p~~-~~~~~~~~~~~~l~~L~~L~L~~n~l~------------~lp~~l~~l~~L~~L~L~~N~l~~l~~~- 224 (328)
T 4fcg_A 159 ACPELTELPEP-LASTDASGEHQGLVNLQSLRLEWTGIR------------SLPASIANLQNLKSLKIRNSPLSALGPA- 224 (328)
T ss_dssp EETTCCCCCSC-SEEEC-CCCEEESTTCCEEEEEEECCC------------CCCGGGGGCTTCCEEEEESSCCCCCCGG-
T ss_pred CCCCccccChh-HhhccchhhhccCCCCCEEECcCCCcC------------cchHhhcCCCCCCEEEccCCCCCcCchh-
Confidence 98777777543 33 3667777777666551 2334456666666666665543322211
Q ss_pred ccccCceEEEEEcccCCCCCcccccceeeeccCCccccccccccCccceeeccccCCcccccccccccccccccEEEeec
Q 037851 676 FSRKLKRYRIVVGFQWAPFDKYKTRRTLKLKLNSRICLEEWRGMKNVEYLRLDELPGLTNVLHDLDGEGFAELKHLNVKN 755 (1053)
Q Consensus 676 ~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~l~~L~~L~l~~ 755 (1053)
+ ..+++|+.|++++
T Consensus 225 ----------------------------------------------------------------l--~~l~~L~~L~Ls~ 238 (328)
T 4fcg_A 225 ----------------------------------------------------------------I--HHLPKLEELDLRG 238 (328)
T ss_dssp ----------------------------------------------------------------G--GGCTTCCEEECTT
T ss_pred ----------------------------------------------------------------h--ccCCCCCEEECcC
Confidence 1 2344455555554
Q ss_pred CCCceeecCCcccccCcCCccceeecccccccccccccccCccccCCccEEeEccCCCccccCCchhhhccCCccEEEec
Q 037851 756 NSNFLCIVDPLQVRCGAFPMLESLVLQNLINLERICHGQLRAESFCNLKTIKVGSCHKLKNLFSFSIAKFLPQLKTIEVT 835 (1053)
Q Consensus 756 ~~~l~~i~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~l~ 835 (1053)
|.....+. ...+.+++|+.|+++++..+..++. ..+.+++|+.|++++|+.+..+|. .+..+++|+.+.+.
T Consensus 239 n~~~~~~p----~~~~~l~~L~~L~L~~n~~~~~~p~---~~~~l~~L~~L~L~~n~~~~~iP~--~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 239 CTALRNYP----PIFGGRAPLKRLILKDCSNLLTLPL---DIHRLTQLEKLDLRGCVNLSRLPS--LIAQLPANCIILVP 309 (328)
T ss_dssp CTTCCBCC----CCTTCCCCCCEEECTTCTTCCBCCT---TGGGCTTCCEEECTTCTTCCCCCG--GGGGSCTTCEEECC
T ss_pred CcchhhhH----HHhcCCCCCCEEECCCCCchhhcch---hhhcCCCCCEEeCCCCCchhhccH--HHhhccCceEEeCC
Confidence 44222111 1133455666666666554444432 134677888888888877777654 56778888888776
Q ss_pred cc
Q 037851 836 EC 837 (1053)
Q Consensus 836 ~c 837 (1053)
.+
T Consensus 310 ~~ 311 (328)
T 4fcg_A 310 PH 311 (328)
T ss_dssp GG
T ss_pred HH
Confidence 53
No 46
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.79 E-value=1.9e-20 Score=226.22 Aligned_cols=383 Identities=16% Similarity=0.120 Sum_probs=192.4
Q ss_pred CCCceeEEeecCccccC-CCcccccC--ccCcEEEcCCcc-cCC--c-cccCCCCCCcEEEccCCCCcc-----cchhhh
Q 037851 526 GTPKLKVLDFTRMRLLS-LPSSIHLL--TDLRTLCLDGCE-LED--I-RVIGELKDLEILSLQGSKIEQ-----LPREIG 593 (1053)
Q Consensus 526 ~~~~Lr~L~l~~~~~~~-lp~~i~~l--~~Lr~L~L~~~~-~~~--~-~~i~~l~~L~~L~l~~~~l~~-----lp~~i~ 593 (1053)
.+++|+.|++++|.+.. .+..+..+ .+|++|++++|. +.. + .....+++|++|+|++|.+.. ++....
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 57788888888876652 23334443 348888888776 222 1 233467788888888876542 444456
Q ss_pred ccCCCCeeeccCcccccccC----cchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCCeEEEEeccCC
Q 037851 594 QLTQLKLLDLSNCSKLKVIA----PNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLEINILDAG 669 (1053)
Q Consensus 594 ~L~~L~~L~l~~~~~l~~~~----~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~ 669 (1053)
.+++|++|+++++ .+..+. +..+.++++|++|++.+|.+. .....+.++++|+.|+++.....
T Consensus 190 ~~~~L~~L~L~~n-~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~------------~l~~~~~~~~~L~~L~l~~~~~~ 256 (592)
T 3ogk_B 190 HNTSLEVLNFYMT-EFAKISPKDLETIARNCRSLVSVKVGDFEIL------------ELVGFFKAAANLEEFCGGSLNED 256 (592)
T ss_dssp HCCCCCEEECTTC-CCSSCCHHHHHHHHHHCTTCCEEECSSCBGG------------GGHHHHHHCTTCCEEEECBCCCC
T ss_pred cCCCccEEEeecc-CCCccCHHHHHHHHhhCCCCcEEeccCccHH------------HHHHHHhhhhHHHhhcccccccc
Confidence 7788888888773 343111 233456788888888777651 23455677778888877643221
Q ss_pred CCCCccccccCceEEEEEcccCCCCCcccccceeeeccCCcccccccc-ccCccceeeccccCCcccc-ccccccccccc
Q 037851 670 ILPSGFFSRKLKRYRIVVGFQWAPFDKYKTRRTLKLKLNSRICLEEWR-GMKNVEYLRLDELPGLTNV-LHDLDGEGFAE 747 (1053)
Q Consensus 670 ~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~-~l~~L~~L~L~~~~~~~~~-~~~l~~~~l~~ 747 (1053)
..... ..........++.+.+.......++.+. .+++|++|++++|. +... +..+ ...+++
T Consensus 257 ~~~~~---------------~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~-~~~~~~ 319 (592)
T 3ogk_B 257 IGMPE---------------KYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTL-IQKCPN 319 (592)
T ss_dssp TTCTT---------------SSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHH-HTTCTT
T ss_pred cchHH---------------HHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHH-HHhCcC
Confidence 10000 0011122233444444433333344443 56677777777665 2211 1111 145677
Q ss_pred ccEEEeecCCCceeecCCcccccCcCCccceeeccc----------ccccccccccccCccccCCccEEeEccCCCcccc
Q 037851 748 LKHLNVKNNSNFLCIVDPLQVRCGAFPMLESLVLQN----------LINLERICHGQLRAESFCNLKTIKVGSCHKLKNL 817 (1053)
Q Consensus 748 L~~L~l~~~~~l~~i~~~~~~~~~~~p~L~~L~l~~----------~~~L~~~~~~~~~~~~~~~L~~L~i~~c~~l~~l 817 (1053)
|+.|++.++. . ..........+++|+.|++.+ |..+.......+ ...+++|++|++ +|.+++..
T Consensus 320 L~~L~L~~~~--~--~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l-~~~~~~L~~L~l-~~~~l~~~ 393 (592)
T 3ogk_B 320 LEVLETRNVI--G--DRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIAL-AQGCQELEYMAV-YVSDITNE 393 (592)
T ss_dssp CCEEEEEGGG--H--HHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHH-HHHCTTCSEEEE-EESCCCHH
T ss_pred CCEEeccCcc--C--HHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHH-HhhCccCeEEEe-ecCCccHH
Confidence 7777776321 0 001111123456677777764 444332110000 123567777776 44445443
Q ss_pred CCchhhhccCCccEEEecc---cchhhhHhhcCcccccccccccccceEecCCCcc-cccccccccccccccchhhhhHh
Q 037851 818 FSFSIAKFLPQLKTIEVTE---CKIVEEIFVSSNEEAIGEIALAQVRSLILRTLPL-LASFSAFVKTTSTVEAKHNEIIL 893 (1053)
Q Consensus 818 ~~~~~~~~l~~L~~L~l~~---c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~-L~si~~~~~~~~~l~~~~~~~~~ 893 (1053)
.......++++|++|++++ |+.+...+.... .......+++|++|++.+|.. +..... .
T Consensus 394 ~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~-~~~~~~~~~~L~~L~L~~~~~~l~~~~~-------------~--- 456 (592)
T 3ogk_B 394 SLESIGTYLKNLCDFRLVLLDREERITDLPLDNG-VRSLLIGCKKLRRFAFYLRQGGLTDLGL-------------S--- 456 (592)
T ss_dssp HHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHH-HHHHHHHCTTCCEEEEECCGGGCCHHHH-------------H---
T ss_pred HHHHHHhhCCCCcEEEEeecCCCccccCchHHHH-HHHHHHhCCCCCEEEEecCCCCccHHHH-------------H---
Confidence 2212223466777777763 333332110000 000011356667776665543 111000 0
Q ss_pred hhccccCCCCccccccccccccceEeecccccceeccCCccccccccCCcccEEEEecCccccccccchhHhhhccCcEE
Q 037851 894 ENESQLHTPSSLFNVKLVLPNLEVLEVRDLNVAKIWHNQFSAAMSCNVQNLTRLVVLDCHKLRYVFSYSTAKRLGQLKHL 973 (1053)
Q Consensus 894 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~l~~l~sL~~L 973 (1053)
.....+++|++|++++|++.+... ......+++|++|++++|+ ++..........+++|++|
T Consensus 457 -------------~~~~~~~~L~~L~L~~n~l~~~~~----~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L 518 (592)
T 3ogk_B 457 -------------YIGQYSPNVRWMLLGYVGESDEGL----MEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYL 518 (592)
T ss_dssp -------------HHHHSCTTCCEEEECSCCSSHHHH----HHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEE
T ss_pred -------------HHHHhCccceEeeccCCCCCHHHH----HHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCee
Confidence 000116667777777765543110 0112345677777777776 4443233344566777777
Q ss_pred EEeccc
Q 037851 974 VISRCP 979 (1053)
Q Consensus 974 ~i~~c~ 979 (1053)
++++|+
T Consensus 519 ~ls~n~ 524 (592)
T 3ogk_B 519 WVQGYR 524 (592)
T ss_dssp EEESCB
T ss_pred ECcCCc
Confidence 777776
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.79 E-value=1e-17 Score=185.59 Aligned_cols=141 Identities=18% Similarity=0.363 Sum_probs=115.0
Q ss_pred CCcccccCCCceeEEeecCccccCCCc-ccccCccCcEEEcCCcccCC--ccccCCCCCCcEEEccCCCCcccchhhhcc
Q 037851 519 IPDNIFIGTPKLKVLDFTRMRLLSLPS-SIHLLTDLRTLCLDGCELED--IRVIGELKDLEILSLQGSKIEQLPREIGQL 595 (1053)
Q Consensus 519 ~~~~~~~~~~~Lr~L~l~~~~~~~lp~-~i~~l~~Lr~L~L~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L 595 (1053)
+|..+ .+.|++|++++|.+..+|. .+..+++|++|++++|.+.. +..++.+++|++|++++|.+..+|..+.
T Consensus 46 lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~-- 120 (330)
T 1xku_A 46 VPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP-- 120 (330)
T ss_dssp CCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--
T ss_pred cCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--
Confidence 56544 3678999999999998866 68999999999999999877 5789999999999999999999997765
Q ss_pred CCCCeeeccCcccccccCcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCCeEEEEeccCCCCCCc
Q 037851 596 TQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLEINILDAGILPSG 674 (1053)
Q Consensus 596 ~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~ 674 (1053)
++|++|++++ +.+..+++..+.++++|++|++++|.+.. .......+.++++|+.|+++.+....+|..
T Consensus 121 ~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~---------~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~ 189 (330)
T 1xku_A 121 KTLQELRVHE-NEITKVRKSVFNGLNQMIVVELGTNPLKS---------SGIENGAFQGMKKLSYIRIADTNITTIPQG 189 (330)
T ss_dssp TTCCEEECCS-SCCCBBCHHHHTTCTTCCEEECCSSCCCG---------GGBCTTGGGGCTTCCEEECCSSCCCSCCSS
T ss_pred ccccEEECCC-CcccccCHhHhcCCccccEEECCCCcCCc---------cCcChhhccCCCCcCEEECCCCccccCCcc
Confidence 7999999998 57888888888999999999999987621 123445678889999999988776655543
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.79 E-value=4.6e-18 Score=188.58 Aligned_cols=140 Identities=19% Similarity=0.345 Sum_probs=105.2
Q ss_pred CCcccccCCCceeEEeecCccccCCC-cccccCccCcEEEcCCcccCC--ccccCCCCCCcEEEccCCCCcccchhhhcc
Q 037851 519 IPDNIFIGTPKLKVLDFTRMRLLSLP-SSIHLLTDLRTLCLDGCELED--IRVIGELKDLEILSLQGSKIEQLPREIGQL 595 (1053)
Q Consensus 519 ~~~~~~~~~~~Lr~L~l~~~~~~~lp-~~i~~l~~Lr~L~L~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L 595 (1053)
+|..+ .+.|++|++++|.+..++ ..+.++++|++|++++|.+.. +..++++++|++|++++|.+..+|..+.
T Consensus 48 ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~-- 122 (332)
T 2ft3_A 48 VPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP-- 122 (332)
T ss_dssp CCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--
T ss_pred cCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--
Confidence 66654 357888899888888764 478888889999998888876 4678888899999999888888887665
Q ss_pred CCCCeeeccCcccccccCcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCCeEEEEeccCCCCCCc
Q 037851 596 TQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLEINILDAGILPSG 674 (1053)
Q Consensus 596 ~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~ 674 (1053)
++|++|++++ +.+..+++..+.++++|++|++++|.+.. .......+..+ +|+.|+++.+....+|..
T Consensus 123 ~~L~~L~l~~-n~i~~~~~~~~~~l~~L~~L~l~~n~l~~---------~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~ 190 (332)
T 2ft3_A 123 SSLVELRIHD-NRIRKVPKGVFSGLRNMNCIEMGGNPLEN---------SGFEPGAFDGL-KLNYLRISEAKLTGIPKD 190 (332)
T ss_dssp TTCCEEECCS-SCCCCCCSGGGSSCSSCCEEECCSCCCBG---------GGSCTTSSCSC-CCSCCBCCSSBCSSCCSS
T ss_pred ccCCEEECCC-CccCccCHhHhCCCccCCEEECCCCcccc---------CCCCcccccCC-ccCEEECcCCCCCccCcc
Confidence 7888999888 46777877778888899999888887621 11233445555 777888777766555543
No 49
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.79 E-value=5.4e-18 Score=187.98 Aligned_cols=123 Identities=24% Similarity=0.344 Sum_probs=97.3
Q ss_pred CceeEEeecCccccCCCcccccCccCcEEEcCCcccCC--ccccCCCCCCcEEEccCCCCccc-chhhhccCCCCeeecc
Q 037851 528 PKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDGCELED--IRVIGELKDLEILSLQGSKIEQL-PREIGQLTQLKLLDLS 604 (1053)
Q Consensus 528 ~~Lr~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~ 604 (1053)
.++++++++++.+..+|..+. .+|++|++++|.+.. +..++++++|++|++++|.+..+ |..++++++|++|+++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred ccCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 368999999999999988764 689999999999877 35789999999999999999876 6778999999999999
Q ss_pred CcccccccCcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCCeEEEEecc
Q 037851 605 NCSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLEINILD 667 (1053)
Q Consensus 605 ~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~ 667 (1053)
+ +.+..+|+.. . ++|++|++++|.+. ......+.++++|+.|+++++.
T Consensus 111 ~-n~l~~l~~~~-~--~~L~~L~l~~n~i~-----------~~~~~~~~~l~~L~~L~l~~n~ 158 (332)
T 2ft3_A 111 K-NHLVEIPPNL-P--SSLVELRIHDNRIR-----------KVPKGVFSGLRNMNCIEMGGNP 158 (332)
T ss_dssp S-SCCCSCCSSC-C--TTCCEEECCSSCCC-----------CCCSGGGSSCSSCCEEECCSCC
T ss_pred C-CcCCccCccc-c--ccCCEEECCCCccC-----------ccCHhHhCCCccCCEEECCCCc
Confidence 8 4677776543 3 78999999888762 2223346777788887776654
No 50
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.78 E-value=1.3e-17 Score=184.80 Aligned_cols=124 Identities=23% Similarity=0.368 Sum_probs=99.6
Q ss_pred CCceeEEeecCccccCCCcccccCccCcEEEcCCcccCCc--cccCCCCCCcEEEccCCCCccc-chhhhccCCCCeeec
Q 037851 527 TPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDGCELEDI--RVIGELKDLEILSLQGSKIEQL-PREIGQLTQLKLLDL 603 (1053)
Q Consensus 527 ~~~Lr~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~~--~~i~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l 603 (1053)
..++++++++++.+..+|..+. .+|++|++++|.+... ..++++++|++|++++|.+..+ |..++++++|++|++
T Consensus 30 ~c~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 30 QCHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp EEETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred cCCCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 3478899999999999988664 6899999999998883 4789999999999999999877 778999999999999
Q ss_pred cCcccccccCcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCCeEEEEecc
Q 037851 604 SNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLEINILD 667 (1053)
Q Consensus 604 ~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~ 667 (1053)
++ +.+..+|... . ++|++|++++|.+ .......+.++++|+.|+++.+.
T Consensus 108 s~-n~l~~l~~~~-~--~~L~~L~l~~n~l-----------~~~~~~~~~~l~~L~~L~l~~n~ 156 (330)
T 1xku_A 108 SK-NQLKELPEKM-P--KTLQELRVHENEI-----------TKVRKSVFNGLNQMIVVELGTNP 156 (330)
T ss_dssp CS-SCCSBCCSSC-C--TTCCEEECCSSCC-----------CBBCHHHHTTCTTCCEEECCSSC
T ss_pred CC-CcCCccChhh-c--ccccEEECCCCcc-----------cccCHhHhcCCccccEEECCCCc
Confidence 98 4677776543 2 7899999998876 23334557778888888776553
No 51
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.76 E-value=1e-19 Score=219.82 Aligned_cols=438 Identities=13% Similarity=0.054 Sum_probs=263.4
Q ss_pred CCcccccCCCceeEEeecCccc----cCCCcccc------------cCccCcEEEcCCcccCC--ccccCCC--CCCcEE
Q 037851 519 IPDNIFIGTPKLKVLDFTRMRL----LSLPSSIH------------LLTDLRTLCLDGCELED--IRVIGEL--KDLEIL 578 (1053)
Q Consensus 519 ~~~~~~~~~~~Lr~L~l~~~~~----~~lp~~i~------------~l~~Lr~L~L~~~~~~~--~~~i~~l--~~L~~L 578 (1053)
.|+.++..+++|+.|+++++.. ..+|..++ .+++|++|+|++|.+.. +..++.+ .+|++|
T Consensus 64 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L 143 (592)
T 3ogk_B 64 TPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETL 143 (592)
T ss_dssp CHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEE
T ss_pred ChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEE
Confidence 4566778899999999988643 12333333 78899999999998765 4555553 459999
Q ss_pred EccCCC-Cc--ccchhhhccCCCCeeeccCcccccccC----cchhcCCccCceeecccccccccccCCcccccCCChhh
Q 037851 579 SLQGSK-IE--QLPREIGQLTQLKLLDLSNCSKLKVIA----PNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDE 651 (1053)
Q Consensus 579 ~l~~~~-l~--~lp~~i~~L~~L~~L~l~~~~~l~~~~----~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 651 (1053)
++++|. +. .++..+.++++|++|++++|. +.... +..+.++++|++|++++|.+... ........
T Consensus 144 ~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~-------~~~~l~~~ 215 (592)
T 3ogk_B 144 KLDKCSGFTTDGLLSIVTHCRKIKTLLMEESS-FSEKDGKWLHELAQHNTSLEVLNFYMTEFAKI-------SPKDLETI 215 (592)
T ss_dssp EEESCEEEEHHHHHHHHHHCTTCSEEECTTCE-EECCCSHHHHHHHHHCCCCCEEECTTCCCSSC-------CHHHHHHH
T ss_pred ECcCCCCcCHHHHHHHHhhCCCCCEEECcccc-ccCcchhHHHHHHhcCCCccEEEeeccCCCcc-------CHHHHHHH
Confidence 999985 32 445555689999999999963 33221 22356789999999998876200 01122334
Q ss_pred hcCCCCCCeEEEEeccCCCCCCccccccCceEEEEEcccCCCCCcccccceeeeccCCcc-----ccccccccCccceee
Q 037851 652 LKNLSRLTSLEINILDAGILPSGFFSRKLKRYRIVVGFQWAPFDKYKTRRTLKLKLNSRI-----CLEEWRGMKNVEYLR 726 (1053)
Q Consensus 652 L~~l~~L~~L~i~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~-----~~~~~~~l~~L~~L~ 726 (1053)
+.++++|+.|+++.+....++..+. ..+.++.+.+...... .......+++|+.|.
T Consensus 216 ~~~~~~L~~L~L~~~~~~~l~~~~~-------------------~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ 276 (592)
T 3ogk_B 216 ARNCRSLVSVKVGDFEILELVGFFK-------------------AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLG 276 (592)
T ss_dssp HHHCTTCCEEECSSCBGGGGHHHHH-------------------HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEE
T ss_pred HhhCCCCcEEeccCccHHHHHHHHh-------------------hhhHHHhhcccccccccchHHHHHHhhccccccccC
Confidence 5678999999998765443332221 1223333333321111 111122678899998
Q ss_pred ccccCCcccccccccccccccccEEEeecCCCceeecCCcccccCcCCccceeecccccccccccccccCccccCCccEE
Q 037851 727 LDELPGLTNVLHDLDGEGFAELKHLNVKNNSNFLCIVDPLQVRCGAFPMLESLVLQNLINLERICHGQLRAESFCNLKTI 806 (1053)
Q Consensus 727 L~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L 806 (1053)
+.++.. ..++.+ ...+++|++|++++|. +... ........+|+|+.|++.++..-..+ ..-...+++|++|
T Consensus 277 l~~~~~--~~l~~~-~~~~~~L~~L~Ls~~~-l~~~--~~~~~~~~~~~L~~L~L~~~~~~~~l---~~~~~~~~~L~~L 347 (592)
T 3ogk_B 277 LSYMGP--NEMPIL-FPFAAQIRKLDLLYAL-LETE--DHCTLIQKCPNLEVLETRNVIGDRGL---EVLAQYCKQLKRL 347 (592)
T ss_dssp ETTCCT--TTGGGG-GGGGGGCCEEEETTCC-CCHH--HHHHHHTTCTTCCEEEEEGGGHHHHH---HHHHHHCTTCCEE
T ss_pred ccccch--hHHHHH-HhhcCCCcEEecCCCc-CCHH--HHHHHHHhCcCCCEEeccCccCHHHH---HHHHHhCCCCCEE
Confidence 877422 122222 2568899999999986 2211 11111467899999999843211111 0111357899999
Q ss_pred eEcc----------CCCccccCCchhhhccCCccEEEecccchhhhHhhcCcccccccccccccceEecCC---Cccccc
Q 037851 807 KVGS----------CHKLKNLFSFSIAKFLPQLKTIEVTECKIVEEIFVSSNEEAIGEIALAQVRSLILRT---LPLLAS 873 (1053)
Q Consensus 807 ~i~~----------c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~---c~~L~s 873 (1053)
++.+ |..++..........+++|++|++. |..+......... ..+++|++|++.+ |..++.
T Consensus 348 ~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~-~~~l~~~~~~~l~-----~~~~~L~~L~l~~~~~~n~l~~ 421 (592)
T 3ogk_B 348 RIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVY-VSDITNESLESIG-----TYLKNLCDFRLVLLDREERITD 421 (592)
T ss_dssp EEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEE-ESCCCHHHHHHHH-----HHCCSCCEEEEEECSCCSCCSS
T ss_pred EeecCccccccccccCccCHHHHHHHHhhCccCeEEEee-cCCccHHHHHHHH-----hhCCCCcEEEEeecCCCccccC
Confidence 9995 7776654222335679999999994 4444332211100 1378899999985 445554
Q ss_pred ccccccccccccchhhhhHhhhccccCCCCccccccccccccceEeecccc--cceeccCCccccccccCCcccEEEEec
Q 037851 874 FSAFVKTTSTVEAKHNEIILENESQLHTPSSLFNVKLVLPNLEVLEVRDLN--VAKIWHNQFSAAMSCNVQNLTRLVVLD 951 (1053)
Q Consensus 874 i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~~~~~l~~L~~L~i~~ 951 (1053)
.|... ... .....+++|++|++++|+ +.+.. + ......+++|+.|++.+
T Consensus 422 ~p~~~---------~~~----------------~~~~~~~~L~~L~L~~~~~~l~~~~---~-~~~~~~~~~L~~L~L~~ 472 (592)
T 3ogk_B 422 LPLDN---------GVR----------------SLLIGCKKLRRFAFYLRQGGLTDLG---L-SYIGQYSPNVRWMLLGY 472 (592)
T ss_dssp CCCHH---------HHH----------------HHHHHCTTCCEEEEECCGGGCCHHH---H-HHHHHSCTTCCEEEECS
T ss_pred chHHH---------HHH----------------HHHHhCCCCCEEEEecCCCCccHHH---H-HHHHHhCccceEeeccC
Confidence 32110 000 001128899999998763 33211 1 11123578899999998
Q ss_pred CccccccccchhHhhhccCcEEEEecccccceeecccCccccCCcccccccCccccccccccccccCCCCccCCCCcceE
Q 037851 952 CHKLRYVFSYSTAKRLGQLKHLVISRCPLLEEIVGKEGGVEADPSFVFPQLTILKLSSLPELRAFYPGIHTLECPILTKL 1031 (1053)
Q Consensus 952 c~~l~~l~~~~~l~~l~sL~~L~i~~c~~l~~i~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~l~~~~~~~~~~sL~~L 1031 (1053)
|. +++......+.++++|++|+|++|+ ++.. +.. .....+|+|++|+|++|+ ++..........+|.|...
T Consensus 473 n~-l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~-----~~~-~~~~~l~~L~~L~ls~n~-it~~~~~~l~~~~p~l~~~ 543 (592)
T 3ogk_B 473 VG-ESDEGLMEFSRGCPNLQKLEMRGCC-FSER-----AIA-AAVTKLPSLRYLWVQGYR-ASMTGQDLMQMARPYWNIE 543 (592)
T ss_dssp CC-SSHHHHHHHHTCCTTCCEEEEESCC-CBHH-----HHH-HHHHHCSSCCEEEEESCB-CCTTCTTGGGGCCTTEEEE
T ss_pred CC-CCHHHHHHHHhcCcccCeeeccCCC-CcHH-----HHH-HHHHhcCccCeeECcCCc-CCHHHHHHHHHhCCCcEEE
Confidence 75 5553333456788999999999998 4322 110 012347899999999997 6543222223346777766
Q ss_pred EEecC
Q 037851 1032 EVSFC 1036 (1053)
Q Consensus 1032 ~I~~C 1036 (1053)
.|...
T Consensus 544 ~~~~~ 548 (592)
T 3ogk_B 544 LIPSR 548 (592)
T ss_dssp EECCC
T ss_pred EecCc
Confidence 66543
No 52
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.73 E-value=1e-17 Score=183.61 Aligned_cols=128 Identities=26% Similarity=0.337 Sum_probs=97.8
Q ss_pred CceeEEeecCcccc---CCCcccccCccCcEEEcCC-cccCC--ccccCCCCCCcEEEccCCCCc-ccchhhhccCCCCe
Q 037851 528 PKLKVLDFTRMRLL---SLPSSIHLLTDLRTLCLDG-CELED--IRVIGELKDLEILSLQGSKIE-QLPREIGQLTQLKL 600 (1053)
Q Consensus 528 ~~Lr~L~l~~~~~~---~lp~~i~~l~~Lr~L~L~~-~~~~~--~~~i~~l~~L~~L~l~~~~l~-~lp~~i~~L~~L~~ 600 (1053)
.+++.|+++++.+. .+|..+.++++|++|++++ |.+.. |..++++++|++|++++|.+. .+|..++++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 57888888888887 4788888888888888885 66654 677888888888888888887 77888888888888
Q ss_pred eeccCcccccccCcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCC-CCCeEEEEecc
Q 037851 601 LDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLS-RLTSLEINILD 667 (1053)
Q Consensus 601 L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~-~L~~L~i~~~~ 667 (1053)
|++++| .+....|..++++++|++|++++|.+. ...+..+..++ +|+.|+++.+.
T Consensus 130 L~Ls~N-~l~~~~p~~~~~l~~L~~L~L~~N~l~-----------~~~p~~l~~l~~~L~~L~L~~N~ 185 (313)
T 1ogq_A 130 LDFSYN-ALSGTLPPSISSLPNLVGITFDGNRIS-----------GAIPDSYGSFSKLFTSMTISRNR 185 (313)
T ss_dssp EECCSS-EEESCCCGGGGGCTTCCEEECCSSCCE-----------EECCGGGGCCCTTCCEEECCSSE
T ss_pred EeCCCC-ccCCcCChHHhcCCCCCeEECcCCccc-----------CcCCHHHhhhhhcCcEEECcCCe
Confidence 888884 566444556788888888888888762 23445666666 77777766543
No 53
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.72 E-value=6.7e-17 Score=178.10 Aligned_cols=230 Identities=20% Similarity=0.244 Sum_probs=157.4
Q ss_pred cCccCcEEEcCCcccCC-ccccCCCCCCcEEEccCCCCcccchhhhccCCCCeeeccCcccccccCcchhcCCccCceee
Q 037851 549 LLTDLRTLCLDGCELED-IRVIGELKDLEILSLQGSKIEQLPREIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELY 627 (1053)
Q Consensus 549 ~l~~Lr~L~L~~~~~~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~ 627 (1053)
...++++|++++|.+.. |..++++++|++|++++|.+..+|..++++++|++|++++| .+..+|. .++++++|++|+
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~-~l~~l~~L~~L~ 156 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN-PLRALPA-SIASLNRLRELS 156 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESC-CCCCCCG-GGGGCTTCCEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCC-ccccCcH-HHhcCcCCCEEE
Confidence 35789999999999887 67788999999999999999999999999999999999984 6777754 488899999999
Q ss_pred cccccccccccCCcccccCCChhhhcCCCCCCeEEEEeccCCCCCCccccccCceEEEEEcccCCCCCcccccceeeecc
Q 037851 628 MANCSIEWEHLGPGIERSNASLDELKNLSRLTSLEINILDAGILPSGFFSRKLKRYRIVVGFQWAPFDKYKTRRTLKLKL 707 (1053)
Q Consensus 628 l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~ 707 (1053)
+++|.......... ........++++++|+.|+++.+....+
T Consensus 157 L~~n~~~~~~p~~~--~~~~~~~~~~~l~~L~~L~L~~n~l~~l------------------------------------ 198 (328)
T 4fcg_A 157 IRACPELTELPEPL--ASTDASGEHQGLVNLQSLRLEWTGIRSL------------------------------------ 198 (328)
T ss_dssp EEEETTCCCCCSCS--EEEC-CCCEEESTTCCEEEEEEECCCCC------------------------------------
T ss_pred CCCCCCccccChhH--hhccchhhhccCCCCCEEECcCCCcCcc------------------------------------
Confidence 98876521100000 0000011122344444444443322211
Q ss_pred CCccccccccccCccceeeccccCCcccccccccccccccccEEEeecCCCceeecCCcccccCcCCccceeeccccccc
Q 037851 708 NSRICLEEWRGMKNVEYLRLDELPGLTNVLHDLDGEGFAELKHLNVKNNSNFLCIVDPLQVRCGAFPMLESLVLQNLINL 787 (1053)
Q Consensus 708 ~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~p~L~~L~l~~~~~L 787 (1053)
...+ ..+++|+.|++++|. +..+. .....+++|+.|+++++...
T Consensus 199 -----------------------------p~~l--~~l~~L~~L~L~~N~-l~~l~----~~l~~l~~L~~L~Ls~n~~~ 242 (328)
T 4fcg_A 199 -----------------------------PASI--ANLQNLKSLKIRNSP-LSALG----PAIHHLPKLEELDLRGCTAL 242 (328)
T ss_dssp -----------------------------CGGG--GGCTTCCEEEEESSC-CCCCC----GGGGGCTTCCEEECTTCTTC
T ss_pred -----------------------------hHhh--cCCCCCCEEEccCCC-CCcCc----hhhccCCCCCEEECcCCcch
Confidence 1112 456788888888775 22222 23557889999999997766
Q ss_pred ccccccccCccccCCccEEeEccCCCccccCCchhhhccCCccEEEecccchhhhHhhcCcccccccccccccceEecC
Q 037851 788 ERICHGQLRAESFCNLKTIKVGSCHKLKNLFSFSIAKFLPQLKTIEVTECKIVEEIFVSSNEEAIGEIALAQVRSLILR 866 (1053)
Q Consensus 788 ~~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 866 (1053)
..++. ..+.+++|+.|++.+|..+..+|. .+..+++|+.|++++|+.+..+|... ..+++|+.+.+.
T Consensus 243 ~~~p~---~~~~l~~L~~L~L~~n~~~~~~p~--~~~~l~~L~~L~L~~n~~~~~iP~~l-------~~L~~L~~l~l~ 309 (328)
T 4fcg_A 243 RNYPP---IFGGRAPLKRLILKDCSNLLTLPL--DIHRLTQLEKLDLRGCVNLSRLPSLI-------AQLPANCIILVP 309 (328)
T ss_dssp CBCCC---CTTCCCCCCEEECTTCTTCCBCCT--TGGGCTTCCEEECTTCTTCCCCCGGG-------GGSCTTCEEECC
T ss_pred hhhHH---HhcCCCCCCEEECCCCCchhhcch--hhhcCCCCCEEeCCCCCchhhccHHH-------hhccCceEEeCC
Confidence 55532 235789999999999987777765 46889999999999998877776432 236677776664
No 54
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.72 E-value=2.6e-17 Score=180.31 Aligned_cols=152 Identities=18% Similarity=0.317 Sum_probs=123.6
Q ss_pred CcceEEeeccCCCCCCCCCcccccCCCceeEEeecC-cccc-CCCcccccCccCcEEEcCCcccCC--ccccCCCCCCcE
Q 037851 502 KCSRISLYDNNINSPLKIPDNIFIGTPKLKVLDFTR-MRLL-SLPSSIHLLTDLRTLCLDGCELED--IRVIGELKDLEI 577 (1053)
Q Consensus 502 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~-~~~~-~lp~~i~~l~~Lr~L~L~~~~~~~--~~~i~~l~~L~~ 577 (1053)
.++.+.+.++...+...+|.. |.++++|++|++++ |.+. .+|..++++++|++|++++|.+.. |..++++++|++
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~-l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSS-LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGG-GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred eEEEEECCCCCccCCcccChh-HhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 366778877776643246654 57899999999995 7776 689999999999999999999874 678999999999
Q ss_pred EEccCCCCc-ccchhhhccCCCCeeeccCcccccccCcchhcCCc-cCceeecccccccccccCCcccccCCChhhhcCC
Q 037851 578 LSLQGSKIE-QLPREIGQLTQLKLLDLSNCSKLKVIAPNVLSNLS-QLEELYMANCSIEWEHLGPGIERSNASLDELKNL 655 (1053)
Q Consensus 578 L~l~~~~l~-~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l 655 (1053)
|++++|.+. .+|..++++++|++|++++| .+....|..+++++ +|++|++++|.+. ...+..+..+
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~~L~~L~L~~N~l~-----------~~~~~~~~~l 197 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGN-RISGAIPDSYGSFSKLFTSMTISRNRLT-----------GKIPPTFANL 197 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSS-CCEEECCGGGGCCCTTCCEEECCSSEEE-----------EECCGGGGGC
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCC-cccCcCCHHHhhhhhcCcEEECcCCeee-----------ccCChHHhCC
Confidence 999999998 88999999999999999995 56633355689998 9999999999872 2344556666
Q ss_pred CCCCeEEEEecc
Q 037851 656 SRLTSLEINILD 667 (1053)
Q Consensus 656 ~~L~~L~i~~~~ 667 (1053)
+ |+.|+++.+.
T Consensus 198 ~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 198 N-LAFVDLSRNM 208 (313)
T ss_dssp C-CSEEECCSSE
T ss_pred c-ccEEECcCCc
Confidence 5 8888887654
No 55
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.72 E-value=1.2e-18 Score=210.62 Aligned_cols=138 Identities=20% Similarity=0.277 Sum_probs=84.9
Q ss_pred CCcccccCCCceeEEeecCcccc----CCCc------------ccccCccCcEEEcCCcccCC--ccccC-CCCCCcEEE
Q 037851 519 IPDNIFIGTPKLKVLDFTRMRLL----SLPS------------SIHLLTDLRTLCLDGCELED--IRVIG-ELKDLEILS 579 (1053)
Q Consensus 519 ~~~~~~~~~~~Lr~L~l~~~~~~----~lp~------------~i~~l~~Lr~L~L~~~~~~~--~~~i~-~l~~L~~L~ 579 (1053)
.|..++..+++|+.|+++++... -.|. ....+++|++|++++|.+.. +..+. .+++|++|+
T Consensus 57 ~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~ 136 (594)
T 2p1m_B 57 SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLV 136 (594)
T ss_dssp CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEE
T ss_pred CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEe
Confidence 45566778899999999987522 1121 12356788888888887665 34454 577888888
Q ss_pred ccCC-CCcc--cchhhhccCCCCeeeccCcccccccCcch----hcCCccCceeecccccccccccCCcccccCCChhh-
Q 037851 580 LQGS-KIEQ--LPREIGQLTQLKLLDLSNCSKLKVIAPNV----LSNLSQLEELYMANCSIEWEHLGPGIERSNASLDE- 651 (1053)
Q Consensus 580 l~~~-~l~~--lp~~i~~L~~L~~L~l~~~~~l~~~~~~~----l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~- 651 (1053)
+++| .+.. ++..+.++++|++|++++|. +....+.. ...+++|++|++++|.... ....+..
T Consensus 137 L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~---------~~~~l~~l 206 (594)
T 2p1m_B 137 LSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEV---------SFSALERL 206 (594)
T ss_dssp EESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCC---------CHHHHHHH
T ss_pred CCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcC---------CHHHHHHH
Confidence 8887 4553 55555678888888888754 43322222 2356688888887764100 1112222
Q ss_pred hcCCCCCCeEEEEec
Q 037851 652 LKNLSRLTSLEINIL 666 (1053)
Q Consensus 652 L~~l~~L~~L~i~~~ 666 (1053)
..++++|+.|+++++
T Consensus 207 ~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 207 VTRCPNLKSLKLNRA 221 (594)
T ss_dssp HHHCTTCCEEECCTT
T ss_pred HHhCCCCcEEecCCC
Confidence 244677777776543
No 56
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.69 E-value=8.7e-19 Score=211.74 Aligned_cols=388 Identities=16% Similarity=0.135 Sum_probs=183.4
Q ss_pred ccCCCceeEEeecCccccC-CCcccc-cCccCcEEEcCCc-ccCC--cc-ccCCCCCCcEEEccCCCCcc-----cchhh
Q 037851 524 FIGTPKLKVLDFTRMRLLS-LPSSIH-LLTDLRTLCLDGC-ELED--IR-VIGELKDLEILSLQGSKIEQ-----LPREI 592 (1053)
Q Consensus 524 ~~~~~~Lr~L~l~~~~~~~-lp~~i~-~l~~Lr~L~L~~~-~~~~--~~-~i~~l~~L~~L~l~~~~l~~-----lp~~i 592 (1053)
+..+++|+.|+++++.+.. .+..+. .+++|++|++++| .+.. +. .+..+++|++|++++|.+.. ++...
T Consensus 101 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~ 180 (594)
T 2p1m_B 101 SSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP 180 (594)
T ss_dssp HHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSC
T ss_pred HHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHh
Confidence 3456778888888777652 233343 5778888888877 3443 32 33467788888888776542 33333
Q ss_pred hccCCCCeeeccCcccccccCc----chhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCCeEEEEeccC
Q 037851 593 GQLTQLKLLDLSNCSKLKVIAP----NVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLEINILDA 668 (1053)
Q Consensus 593 ~~L~~L~~L~l~~~~~l~~~~~----~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~ 668 (1053)
..+++|++|++++|. ..+.. ..+.++++|++|++.+|.. .......+.++++|+.|++..+..
T Consensus 181 ~~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~~~~-----------~~~l~~~~~~~~~L~~L~l~~~~~ 247 (594)
T 2p1m_B 181 DTYTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLNRAVP-----------LEKLATLLQRAPQLEELGTGGYTA 247 (594)
T ss_dssp TTCCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECCTTSC-----------HHHHHHHHHHCTTCSEEECSBCCC
T ss_pred hcCCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecCCCCc-----------HHHHHHHHhcCCcceEcccccccC
Confidence 466678888887754 11211 1224467888888877632 111334456677777776543321
Q ss_pred CCCCCccccccCceEEEEEcccCCCCCccccccee-eeccCCcccccccc-ccCccceeeccccCCcccccccccccccc
Q 037851 669 GILPSGFFSRKLKRYRIVVGFQWAPFDKYKTRRTL-KLKLNSRICLEEWR-GMKNVEYLRLDELPGLTNVLHDLDGEGFA 746 (1053)
Q Consensus 669 ~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l-~l~~~~~~~~~~~~-~l~~L~~L~L~~~~~~~~~~~~l~~~~l~ 746 (1053)
...+..+. .+. ......+.++.+ .+.......++.+. .+++|++|++++|. +.+.........++
T Consensus 248 ~~~~~~~~--~l~----------~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~ 314 (594)
T 2p1m_B 248 EVRPDVYS--GLS----------VALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCP 314 (594)
T ss_dssp CCCHHHHH--HHH----------HHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCT
T ss_pred ccchhhHH--HHH----------HHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCC
Confidence 00000000 000 000000111111 01111111222222 46677777777765 32211110013567
Q ss_pred cccEEEeecCCCceeecCCcccccCcCCccceeecccc--------cccccccccccCccccCCccEEeEccCCCccccC
Q 037851 747 ELKHLNVKNNSNFLCIVDPLQVRCGAFPMLESLVLQNL--------INLERICHGQLRAESFCNLKTIKVGSCHKLKNLF 818 (1053)
Q Consensus 747 ~L~~L~l~~~~~l~~i~~~~~~~~~~~p~L~~L~l~~~--------~~L~~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~ 818 (1053)
+|+.|++.+|. . ..........+++|+.|++.++ ..+.......+ ...+++|+.|.+ +|..++...
T Consensus 315 ~L~~L~l~~~~--~--~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l-~~~~~~L~~L~~-~~~~l~~~~ 388 (594)
T 2p1m_B 315 KLQRLWVLDYI--E--DAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSV-SMGCPKLESVLY-FCRQMTNAA 388 (594)
T ss_dssp TCCEEEEEGGG--H--HHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHH-HHHCTTCCEEEE-EESCCCHHH
T ss_pred CcCEEeCcCcc--C--HHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHH-HHhchhHHHHHH-hcCCcCHHH
Confidence 77777777661 1 0011111224667777777432 22221100000 013567777733 455554432
Q ss_pred CchhhhccCCccEEEec-----ccchhhhHhhcCcccccccccccccceEecCCCcccccccccccccccccchhhhhHh
Q 037851 819 SFSIAKFLPQLKTIEVT-----ECKIVEEIFVSSNEEAIGEIALAQVRSLILRTLPLLASFSAFVKTTSTVEAKHNEIIL 893 (1053)
Q Consensus 819 ~~~~~~~l~~L~~L~l~-----~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~si~~~~~~~~~l~~~~~~~~~ 893 (1053)
.......+++|+.|+++ +|..+...+....- ..-...+++|++|++.+ .+...... .
T Consensus 389 ~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~-~~l~~~~~~L~~L~L~~--~l~~~~~~-------------~-- 450 (594)
T 2p1m_B 389 LITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGF-GAIVEHCKDLRRLSLSG--LLTDKVFE-------------Y-- 450 (594)
T ss_dssp HHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHH-HHHHHHCTTCCEEECCS--SCCHHHHH-------------H--
T ss_pred HHHHHhhCCCcceeEeecccCCCcccccCCchhhHH-HHHHhhCCCccEEeecC--cccHHHHH-------------H--
Confidence 22223356777777777 44444421100000 00011356677776644 22211000 0
Q ss_pred hhccccCCCCccccccccccccceEeecccccceeccCCccccccccCCcccEEEEecCccccccccchhHhhhccCcEE
Q 037851 894 ENESQLHTPSSLFNVKLVLPNLEVLEVRDLNVAKIWHNQFSAAMSCNVQNLTRLVVLDCHKLRYVFSYSTAKRLGQLKHL 973 (1053)
Q Consensus 894 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~l~~l~sL~~L 973 (1053)
....+++|++|++++|.+.+.... .....+++|+.|++++|+. +..........+++|+.|
T Consensus 451 --------------l~~~~~~L~~L~L~~~~i~~~~~~----~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L 511 (594)
T 2p1m_B 451 --------------IGTYAKKMEMLSVAFAGDSDLGMH----HVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSL 511 (594)
T ss_dssp --------------HHHHCTTCCEEEEESCCSSHHHHH----HHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEE
T ss_pred --------------HHHhchhccEeeccCCCCcHHHHH----HHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEE
Confidence 000166777777777765432110 0113467777777777764 333222234556777777
Q ss_pred EEecccc
Q 037851 974 VISRCPL 980 (1053)
Q Consensus 974 ~i~~c~~ 980 (1053)
++++|+.
T Consensus 512 ~l~~~~~ 518 (594)
T 2p1m_B 512 WMSSCSV 518 (594)
T ss_dssp EEESSCC
T ss_pred eeeCCCC
Confidence 7777764
No 57
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.69 E-value=1.1e-18 Score=203.74 Aligned_cols=374 Identities=16% Similarity=0.110 Sum_probs=180.5
Q ss_pred CceeEEeecCccccCC--CcccccCccCcEEEcCCcccCC------ccccCCCCCCcEEEccCCCCcc-cchhh-hccC-
Q 037851 528 PKLKVLDFTRMRLLSL--PSSIHLLTDLRTLCLDGCELED------IRVIGELKDLEILSLQGSKIEQ-LPREI-GQLT- 596 (1053)
Q Consensus 528 ~~Lr~L~l~~~~~~~l--p~~i~~l~~Lr~L~L~~~~~~~------~~~i~~l~~L~~L~l~~~~l~~-lp~~i-~~L~- 596 (1053)
++|+.|+++++.+... ...+..+++|++|++++|.+.. +..+..+++|++|++++|.+.. .+..+ ..+.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 3456666666665532 2224556666666666666553 2345555666666666666553 12222 2233
Q ss_pred ---CCCeeeccCcccccc----cCcchhcCCccCceeecccccccccccCCcccccCCChhh-hcCCCCCCeEEEEeccC
Q 037851 597 ---QLKLLDLSNCSKLKV----IAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDE-LKNLSRLTSLEINILDA 668 (1053)
Q Consensus 597 ---~L~~L~l~~~~~l~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~l~~L~~L~i~~~~~ 668 (1053)
+|++|++++| .+.. ..+..+.++++|++|++++|.+.... ....... ....++|+.|+++.+..
T Consensus 83 ~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~-------~~~l~~~l~~~~~~L~~L~L~~n~l 154 (461)
T 1z7x_W 83 PSCKIQKLSLQNC-CLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAG-------LQLLCEGLLDPQCRLEKLQLEYCSL 154 (461)
T ss_dssp TTCCCCEEECTTS-CCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHH-------HHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred CCCceeEEEccCC-CCCHHHHHHHHHHHccCCceeEEECCCCcCchHH-------HHHHHHHHhcCCCcceEEECCCCCC
Confidence 4666666664 3332 11334556666666666666541000 0000011 11234555555544322
Q ss_pred CCCCCccccccCceEEEEEcccCCCCCcccccceeeeccCCcccccccc-ccCccceeeccccCCcccccccccc---cc
Q 037851 669 GILPSGFFSRKLKRYRIVVGFQWAPFDKYKTRRTLKLKLNSRICLEEWR-GMKNVEYLRLDELPGLTNVLHDLDG---EG 744 (1053)
Q Consensus 669 ~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~-~l~~L~~L~L~~~~~~~~~~~~l~~---~~ 744 (1053)
..... ..++... .+++|++|+++++.-.......+.. ..
T Consensus 155 ~~~~~-------------------------------------~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~ 197 (461)
T 1z7x_W 155 SAASC-------------------------------------EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDS 197 (461)
T ss_dssp BGGGH-------------------------------------HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHS
T ss_pred CHHHH-------------------------------------HHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcC
Confidence 11000 0001111 3455555555554321111111100 12
Q ss_pred cccccEEEeecCCCceeecC-CcccccCcCCccceeeccccccccccccccc---CccccCCccEEeEccCCCccccC--
Q 037851 745 FAELKHLNVKNNSNFLCIVD-PLQVRCGAFPMLESLVLQNLINLERICHGQL---RAESFCNLKTIKVGSCHKLKNLF-- 818 (1053)
Q Consensus 745 l~~L~~L~l~~~~~l~~i~~-~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~---~~~~~~~L~~L~i~~c~~l~~l~-- 818 (1053)
.++|+.|++++|. +..... ........+++|+.|+++++. +.......+ ....+++|++|++++| .++...
T Consensus 198 ~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~ 274 (461)
T 1z7x_W 198 PCQLEALKLESCG-VTSDNCRDLCGIVASKASLRELALGSNK-LGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCG 274 (461)
T ss_dssp CCCCCEEECTTSC-CBTTHHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHH
T ss_pred CCCceEEEccCCC-CcHHHHHHHHHHHHhCCCccEEeccCCc-CChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHH
Confidence 3466667666664 111000 001112345677777777642 322110000 0124688888888888 455421
Q ss_pred -CchhhhccCCccEEEecccchhhhHhhcCcccccccccccccceEecCCCcccccccccccccccccchhhhhHhhhcc
Q 037851 819 -SFSIAKFLPQLKTIEVTECKIVEEIFVSSNEEAIGEIALAQVRSLILRTLPLLASFSAFVKTTSTVEAKHNEIILENES 897 (1053)
Q Consensus 819 -~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~si~~~~~~~~~l~~~~~~~~~~~~~ 897 (1053)
-...+..+++|++|++++|..-...+..... .-....++|++|++.+|. +....... .
T Consensus 275 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~--~l~~~~~~L~~L~L~~n~-l~~~~~~~-------------l----- 333 (461)
T 1z7x_W 275 DLCRVLRAKESLKELSLAGNELGDEGARLLCE--TLLEPGCQLESLWVKSCS-FTAACCSH-------------F----- 333 (461)
T ss_dssp HHHHHHHHCTTCCEEECTTCCCHHHHHHHHHH--HHTSTTCCCCEEECTTSC-CBGGGHHH-------------H-----
T ss_pred HHHHHHhhCCCcceEECCCCCCchHHHHHHHH--HhccCCccceeeEcCCCC-CchHHHHH-------------H-----
Confidence 0123566899999999988543222110000 000123689999999885 22111000 0
Q ss_pred ccCCCCccccccccccccceEeecccccceeccCCccccccccCCcccEEEEecCcccccc---ccchhHhhhccCcEEE
Q 037851 898 QLHTPSSLFNVKLVLPNLEVLEVRDLNVAKIWHNQFSAAMSCNVQNLTRLVVLDCHKLRYV---FSYSTAKRLGQLKHLV 974 (1053)
Q Consensus 898 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l---~~~~~l~~l~sL~~L~ 974 (1053)
......+++|++|++++|.+.+.....+........++|++|++++| ++++. .....+..+++|++|+
T Consensus 334 --------~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~ 404 (461)
T 1z7x_W 334 --------SSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELD 404 (461)
T ss_dssp --------HHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEE
T ss_pred --------HHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCC-CCChhhHHHHHHHHHhCCCccEEE
Confidence 00011268999999999876653221111111112568999999997 45531 0123567789999999
Q ss_pred Eeccc
Q 037851 975 ISRCP 979 (1053)
Q Consensus 975 i~~c~ 979 (1053)
+++|+
T Consensus 405 l~~N~ 409 (461)
T 1z7x_W 405 LSNNC 409 (461)
T ss_dssp CCSSS
T ss_pred CCCCC
Confidence 99996
No 58
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.69 E-value=1.1e-15 Score=181.36 Aligned_cols=259 Identities=20% Similarity=0.132 Sum_probs=176.9
Q ss_pred cceEEeeccCCCCCCCCCcccccCCCceeEEeecCccccCCCcccccCccCcEEEcCCcccCCccccCCCCCCcEEEccC
Q 037851 503 CSRISLYDNNINSPLKIPDNIFIGTPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDGCELEDIRVIGELKDLEILSLQG 582 (1053)
Q Consensus 503 ~~~l~l~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~~~~i~~l~~L~~L~l~~ 582 (1053)
.+.+.+..+... .+|..++ ++|++|++++|.++.+|. .+++|++|+|++|.++.++. .+++|++|++++
T Consensus 42 l~~L~ls~n~L~---~lp~~l~---~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~ 110 (622)
T 3g06_A 42 NAVLNVGESGLT---TLPDCLP---AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFS 110 (622)
T ss_dssp CCEEECCSSCCS---CCCSCCC---TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECS
T ss_pred CcEEEecCCCcC---ccChhhC---CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcC
Confidence 466777666554 3676653 789999999999998887 57889999999999887544 789999999999
Q ss_pred CCCcccchhhhccCCCCeeeccCcccccccCcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCCeEE
Q 037851 583 SKIEQLPREIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLE 662 (1053)
Q Consensus 583 ~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~ 662 (1053)
|.+..+|. .+.+|++|++++ +.+..+|.. +++|++|++++|.+.. .. ..+.+|+.|+
T Consensus 111 N~l~~l~~---~l~~L~~L~L~~-N~l~~lp~~----l~~L~~L~Ls~N~l~~------------l~---~~~~~L~~L~ 167 (622)
T 3g06_A 111 NPLTHLPA---LPSGLCKLWIFG-NQLTSLPVL----PPGLQELSVSDNQLAS------------LP---ALPSELCKLW 167 (622)
T ss_dssp CCCCCCCC---CCTTCCEEECCS-SCCSCCCCC----CTTCCEEECCSSCCSC------------CC---CCCTTCCEEE
T ss_pred CcCCCCCC---CCCCcCEEECCC-CCCCcCCCC----CCCCCEEECcCCcCCC------------cC---CccCCCCEEE
Confidence 99998886 678899999998 467777642 5889999999887621 11 1245788888
Q ss_pred EEeccCCCCCCccccccCceEEEEEcccCCCCCcccccceeeeccCCccccccccccCccceeeccccCCcccccccccc
Q 037851 663 INILDAGILPSGFFSRKLKRYRIVVGFQWAPFDKYKTRRTLKLKLNSRICLEEWRGMKNVEYLRLDELPGLTNVLHDLDG 742 (1053)
Q Consensus 663 i~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~ 742 (1053)
++.+....+|.. .+.++.|+++.+....++. .+++|+.|++.++... . ++
T Consensus 168 L~~N~l~~l~~~----------------------~~~L~~L~Ls~N~l~~l~~--~~~~L~~L~L~~N~l~-~-l~---- 217 (622)
T 3g06_A 168 AYNNQLTSLPML----------------------PSGLQELSVSDNQLASLPT--LPSELYKLWAYNNRLT-S-LP---- 217 (622)
T ss_dssp CCSSCCSCCCCC----------------------CTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCS-S-CC----
T ss_pred CCCCCCCCCccc----------------------CCCCcEEECCCCCCCCCCC--ccchhhEEECcCCccc-c-cC----
Confidence 887776665521 1334444444444333333 3467778877765322 1 11
Q ss_pred cccccccEEEeecCCCceeecCCcccccCcCCccceeecccccccccccccccCccccCCccEEeEccCCCccccCCchh
Q 037851 743 EGFAELKHLNVKNNSNFLCIVDPLQVRCGAFPMLESLVLQNLINLERICHGQLRAESFCNLKTIKVGSCHKLKNLFSFSI 822 (1053)
Q Consensus 743 ~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~ 822 (1053)
..+++|+.|++++|. ++.++ ..+++|+.|+++++ +++.++. .+++|+.|++++| +++.+|. .
T Consensus 218 ~~~~~L~~L~Ls~N~-L~~lp-------~~l~~L~~L~Ls~N-~L~~lp~------~~~~L~~L~Ls~N-~L~~lp~--~ 279 (622)
T 3g06_A 218 ALPSGLKELIVSGNR-LTSLP-------VLPSELKELMVSGN-RLTSLPM------LPSGLLSLSVYRN-QLTRLPE--S 279 (622)
T ss_dssp CCCTTCCEEECCSSC-CSCCC-------CCCTTCCEEECCSS-CCSCCCC------CCTTCCEEECCSS-CCCSCCG--G
T ss_pred CCCCCCCEEEccCCc-cCcCC-------CCCCcCcEEECCCC-CCCcCCc------ccccCcEEeCCCC-CCCcCCH--H
Confidence 235778888888774 33321 35677888888874 5554432 4678888888877 4666654 4
Q ss_pred hhccCCccEEEecccchhhhH
Q 037851 823 AKFLPQLKTIEVTECKIVEEI 843 (1053)
Q Consensus 823 ~~~l~~L~~L~l~~c~~l~~~ 843 (1053)
+..+++|+.|++++|+.....
T Consensus 280 l~~l~~L~~L~L~~N~l~~~~ 300 (622)
T 3g06_A 280 LIHLSSETTVNLEGNPLSERT 300 (622)
T ss_dssp GGGSCTTCEEECCSCCCCHHH
T ss_pred HhhccccCEEEecCCCCCCcC
Confidence 677888888888887654433
No 59
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.67 E-value=3.1e-16 Score=175.41 Aligned_cols=263 Identities=17% Similarity=0.206 Sum_probs=169.7
Q ss_pred CCCcccccCCCceeEEeecCccccCCCc-ccccCccCcEEEcCCcccCC--ccccCCCCCCcEEEccCCCCcccchh-hh
Q 037851 518 KIPDNIFIGTPKLKVLDFTRMRLLSLPS-SIHLLTDLRTLCLDGCELED--IRVIGELKDLEILSLQGSKIEQLPRE-IG 593 (1053)
Q Consensus 518 ~~~~~~~~~~~~Lr~L~l~~~~~~~lp~-~i~~l~~Lr~L~L~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~lp~~-i~ 593 (1053)
.+|..++ ++|++|++++|.+..+|. .+.++++|++|++++|.+.. +..++++++|++|++++|.+..+|.. ++
T Consensus 45 ~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 121 (353)
T 2z80_A 45 SIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFK 121 (353)
T ss_dssp SCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHT
T ss_pred ccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhC
Confidence 3676553 578999999999988766 78899999999999998877 35688999999999999999988876 78
Q ss_pred ccCCCCeeeccCcccccccCc-chhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCCeEEEEeccCCCCC
Q 037851 594 QLTQLKLLDLSNCSKLKVIAP-NVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLEINILDAGILP 672 (1053)
Q Consensus 594 ~L~~L~~L~l~~~~~l~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~ 672 (1053)
++++|++|++++ +.+..++. ..+.++++|++|++++|... .......++++++|+.|+++.+......
T Consensus 122 ~l~~L~~L~L~~-n~l~~l~~~~~~~~l~~L~~L~l~~n~~~----------~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 190 (353)
T 2z80_A 122 PLSSLTFLNLLG-NPYKTLGETSLFSHLTKLQILRVGNMDTF----------TKIQRKDFAGLTFLEELEIDASDLQSYE 190 (353)
T ss_dssp TCTTCSEEECTT-CCCSSSCSSCSCTTCTTCCEEEEEESSSC----------CEECTTTTTTCCEEEEEEEEETTCCEEC
T ss_pred CCccCCEEECCC-CCCcccCchhhhccCCCCcEEECCCCccc----------cccCHHHccCCCCCCEEECCCCCcCccC
Confidence 899999999998 46777766 56788999999999888421 1222345677888888888877543321
Q ss_pred CccccccCceEEEEEcccCCCCCcccccceeeeccCCccccccccccCccceeeccccCCcccccccccccccccccEEE
Q 037851 673 SGFFSRKLKRYRIVVGFQWAPFDKYKTRRTLKLKLNSRICLEEWRGMKNVEYLRLDELPGLTNVLHDLDGEGFAELKHLN 752 (1053)
Q Consensus 673 ~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~l~~L~~L~ 752 (1053)
... +..+++|++|+++++.. .. .+......+++|+.|+
T Consensus 191 ~~~----------------------------------------l~~l~~L~~L~l~~n~l-~~-~~~~~~~~~~~L~~L~ 228 (353)
T 2z80_A 191 PKS----------------------------------------LKSIQNVSHLILHMKQH-IL-LLEIFVDVTSSVECLE 228 (353)
T ss_dssp TTT----------------------------------------TTTCSEEEEEEEECSCS-TT-HHHHHHHHTTTEEEEE
T ss_pred HHH----------------------------------------HhccccCCeecCCCCcc-cc-chhhhhhhcccccEEE
Confidence 110 01344555555554432 11 1111112356666666
Q ss_pred eecCCCceeecCCcccccCcCCccceeeccccccccccccc--ccCccccCCccEEeEccCCCccccCCchhhhccCCcc
Q 037851 753 VKNNSNFLCIVDPLQVRCGAFPMLESLVLQNLINLERICHG--QLRAESFCNLKTIKVGSCHKLKNLFSFSIAKFLPQLK 830 (1053)
Q Consensus 753 l~~~~~l~~i~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~--~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~ 830 (1053)
++++. +..+...........+.++.+.+.++. +...... ......+++|+.|++++| +++.+|. ..+..+++|+
T Consensus 229 L~~n~-l~~~~~~~l~~~~~~~~l~~l~L~~~~-l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~-~~~~~l~~L~ 304 (353)
T 2z80_A 229 LRDTD-LDTFHFSELSTGETNSLIKKFTFRNVK-ITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPD-GIFDRLTSLQ 304 (353)
T ss_dssp EESCB-CTTCCCC------CCCCCCEEEEESCB-CCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCC
T ss_pred CCCCc-cccccccccccccccchhhcccccccc-ccCcchhhhHHHHhcccCCCEEECCCC-CCCccCH-HHHhcCCCCC
Confidence 66653 111111100111233455555555432 1110000 011246789999999988 4777755 3357899999
Q ss_pred EEEecccchh
Q 037851 831 TIEVTECKIV 840 (1053)
Q Consensus 831 ~L~l~~c~~l 840 (1053)
+|++++|+..
T Consensus 305 ~L~L~~N~~~ 314 (353)
T 2z80_A 305 KIWLHTNPWD 314 (353)
T ss_dssp EEECCSSCBC
T ss_pred EEEeeCCCcc
Confidence 9999998643
No 60
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.67 E-value=6.5e-16 Score=179.02 Aligned_cols=135 Identities=18% Similarity=0.285 Sum_probs=91.9
Q ss_pred CCcccccCCCceeEEeecCccccCC-CcccccCccCcEEEcCCcccCC--ccccCCCCCCcEEEccCCCCcccchh-hhc
Q 037851 519 IPDNIFIGTPKLKVLDFTRMRLLSL-PSSIHLLTDLRTLCLDGCELED--IRVIGELKDLEILSLQGSKIEQLPRE-IGQ 594 (1053)
Q Consensus 519 ~~~~~~~~~~~Lr~L~l~~~~~~~l-p~~i~~l~~Lr~L~L~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~lp~~-i~~ 594 (1053)
+|..+ .+++++|++++|.+..+ |..+.++++|++|+|++|.+.. +..++++++|++|+|++|.+..+|.. +..
T Consensus 69 iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 145 (452)
T 3zyi_A 69 VPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEY 145 (452)
T ss_dssp CCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSS
T ss_pred cCCCC---CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcc
Confidence 55543 25677888888887765 4567788888888888887766 35677788888888888887777654 677
Q ss_pred cCCCCeeeccCcccccccCcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCCeEEEEecc
Q 037851 595 LTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLEINILD 667 (1053)
Q Consensus 595 L~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~ 667 (1053)
+++|++|++++ +.+..+++..+.++++|++|++++|... .......+.++++|+.|+++.+.
T Consensus 146 l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~~~~l----------~~i~~~~~~~l~~L~~L~L~~n~ 207 (452)
T 3zyi_A 146 LSKLRELWLRN-NPIESIPSYAFNRVPSLMRLDLGELKKL----------EYISEGAFEGLFNLKYLNLGMCN 207 (452)
T ss_dssp CTTCCEEECCS-CCCCEECTTTTTTCTTCCEEECCCCTTC----------CEECTTTTTTCTTCCEEECTTSC
T ss_pred cCCCCEEECCC-CCcceeCHhHHhcCCcccEEeCCCCCCc----------cccChhhccCCCCCCEEECCCCc
Confidence 88888888877 4577777766777888888887765421 11112235556666666665544
No 61
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.65 E-value=1.1e-15 Score=177.27 Aligned_cols=152 Identities=27% Similarity=0.343 Sum_probs=129.9
Q ss_pred CcceEEeeccCCCCCCCCCcccccCCCceeEEeecCccccCCC-cccccCccCcEEEcCCcccCCc--cccCCCCCCcEE
Q 037851 502 KCSRISLYDNNINSPLKIPDNIFIGTPKLKVLDFTRMRLLSLP-SSIHLLTDLRTLCLDGCELEDI--RVIGELKDLEIL 578 (1053)
Q Consensus 502 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp-~~i~~l~~Lr~L~L~~~~~~~~--~~i~~l~~L~~L 578 (1053)
..+.+.+..+.+.. ++...|.++++|++|++++|.+..++ ..+.++.+|++|+|++|.+..+ ..++.+++|++|
T Consensus 76 ~l~~L~L~~n~i~~---~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 152 (452)
T 3zyi_A 76 NTRYLNLMENNIQM---IQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLREL 152 (452)
T ss_dssp TCSEEECCSSCCCE---ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEE
T ss_pred CccEEECcCCcCce---ECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEE
Confidence 47888888776654 56667889999999999999999765 6799999999999999999883 558999999999
Q ss_pred EccCCCCcccch-hhhccCCCCeeeccCcccccccCcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCC
Q 037851 579 SLQGSKIEQLPR-EIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSR 657 (1053)
Q Consensus 579 ~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~ 657 (1053)
++++|.+..+|. .+.++++|++|++++|+.+..+++..+.++++|++|++++|.+. .+..+..+++
T Consensus 153 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-------------~~~~~~~l~~ 219 (452)
T 3zyi_A 153 WLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-------------DMPNLTPLVG 219 (452)
T ss_dssp ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-------------SCCCCTTCTT
T ss_pred ECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-------------cccccccccc
Confidence 999999998875 67999999999999999999998888999999999999999872 2345777888
Q ss_pred CCeEEEEeccCC
Q 037851 658 LTSLEINILDAG 669 (1053)
Q Consensus 658 L~~L~i~~~~~~ 669 (1053)
|+.|+++++...
T Consensus 220 L~~L~Ls~N~l~ 231 (452)
T 3zyi_A 220 LEELEMSGNHFP 231 (452)
T ss_dssp CCEEECTTSCCS
T ss_pred ccEEECcCCcCc
Confidence 888888766543
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.65 E-value=1.2e-15 Score=175.98 Aligned_cols=139 Identities=22% Similarity=0.326 Sum_probs=97.1
Q ss_pred CCcccccCCCceeEEeecCccccCCC-cccccCccCcEEEcCCcccCC--ccccCCCCCCcEEEccCCCCcccch-hhhc
Q 037851 519 IPDNIFIGTPKLKVLDFTRMRLLSLP-SSIHLLTDLRTLCLDGCELED--IRVIGELKDLEILSLQGSKIEQLPR-EIGQ 594 (1053)
Q Consensus 519 ~~~~~~~~~~~Lr~L~l~~~~~~~lp-~~i~~l~~Lr~L~L~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~lp~-~i~~ 594 (1053)
+|..+. +.++.|++++|.+..++ ..+.++++|++|+|++|.+.. +..+.++++|++|+|++|.+..+|. .+..
T Consensus 58 iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 134 (440)
T 3zyj_A 58 VPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVY 134 (440)
T ss_dssp CCSCCC---TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCS
T ss_pred CCCCCC---CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhc
Confidence 565542 56777888888877654 567788888888888887766 3567778888888888888877765 4677
Q ss_pred cCCCCeeeccCcccccccCcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCCeEEEEeccCCCC
Q 037851 595 LTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLEINILDAGIL 671 (1053)
Q Consensus 595 L~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~ 671 (1053)
+++|++|++++ +.+..+++..+.++++|++|++++|... .......+.++++|+.|+++.+....+
T Consensus 135 l~~L~~L~L~~-N~i~~~~~~~~~~l~~L~~L~l~~~~~l----------~~i~~~~~~~l~~L~~L~L~~n~l~~~ 200 (440)
T 3zyj_A 135 LSKLKELWLRN-NPIESIPSYAFNRIPSLRRLDLGELKRL----------SYISEGAFEGLSNLRYLNLAMCNLREI 200 (440)
T ss_dssp CSSCCEEECCS-CCCCEECTTTTTTCTTCCEEECCCCTTC----------CEECTTTTTTCSSCCEEECTTSCCSSC
T ss_pred cccCceeeCCC-CcccccCHHHhhhCcccCEeCCCCCCCc----------ceeCcchhhcccccCeecCCCCcCccc
Confidence 88888888887 4677777767778888888888775431 111223466677788887776655444
No 63
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.65 E-value=1.1e-15 Score=167.28 Aligned_cols=133 Identities=25% Similarity=0.256 Sum_probs=88.3
Q ss_pred CCcccccCCCceeEEeecCccccCCCcc-cccCccCcEEEcCCcccCC----ccccCCCCCCcEEEccCCCCcccchhhh
Q 037851 519 IPDNIFIGTPKLKVLDFTRMRLLSLPSS-IHLLTDLRTLCLDGCELED----IRVIGELKDLEILSLQGSKIEQLPREIG 593 (1053)
Q Consensus 519 ~~~~~~~~~~~Lr~L~l~~~~~~~lp~~-i~~l~~Lr~L~L~~~~~~~----~~~i~~l~~L~~L~l~~~~l~~lp~~i~ 593 (1053)
+|..+ .++|++|++++|.+..+|.. +.++++|++|++++|.+.. +..+..+++|++|++++|.+..+|..+.
T Consensus 22 ip~~~---~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~ 98 (306)
T 2z66_A 22 VPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFL 98 (306)
T ss_dssp CCSCC---CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEE
T ss_pred CCCCC---CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcC
Confidence 55543 25677778888877777664 5777788888888777654 2455567778888888777777777777
Q ss_pred ccCCCCeeeccCcccccccCc-chhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCCeEEEEec
Q 037851 594 QLTQLKLLDLSNCSKLKVIAP-NVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLEINIL 666 (1053)
Q Consensus 594 ~L~~L~~L~l~~~~~l~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~ 666 (1053)
.+++|++|++++ +.+..+++ ..+.++++|++|++++|.+. ......+..+++|+.|+++++
T Consensus 99 ~l~~L~~L~l~~-n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-----------~~~~~~~~~l~~L~~L~l~~n 160 (306)
T 2z66_A 99 GLEQLEHLDFQH-SNLKQMSEFSVFLSLRNLIYLDISHTHTR-----------VAFNGIFNGLSSLEVLKMAGN 160 (306)
T ss_dssp TCTTCCEEECTT-SEEESSTTTTTTTTCTTCCEEECTTSCCE-----------ECSTTTTTTCTTCCEEECTTC
T ss_pred CCCCCCEEECCC-CcccccccchhhhhccCCCEEECCCCcCC-----------ccchhhcccCcCCCEEECCCC
Confidence 777788887777 35555544 45677777777777777652 222334455566666655443
No 64
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.65 E-value=2.9e-18 Score=200.10 Aligned_cols=156 Identities=19% Similarity=0.254 Sum_probs=112.0
Q ss_pred cceEEeeccCCCCCCCCCcccccCCCceeEEeecCcccc-----CCCcccccCccCcEEEcCCcccCC--cccc-CCCC-
Q 037851 503 CSRISLYDNNINSPLKIPDNIFIGTPKLKVLDFTRMRLL-----SLPSSIHLLTDLRTLCLDGCELED--IRVI-GELK- 573 (1053)
Q Consensus 503 ~~~l~l~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~-----~lp~~i~~l~~Lr~L~L~~~~~~~--~~~i-~~l~- 573 (1053)
.+.+.+.++..... ....++..+++|++|++++|.+. .+|..+..+++|++|++++|.+.. +..+ ..+.
T Consensus 5 l~~L~Ls~~~l~~~--~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 5 IQSLDIQCEELSDA--RWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEESCCCCHH--HHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ceehhhhhcccCch--hHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 34566655543321 12334678999999999999987 467788899999999999999866 3333 3344
Q ss_pred ---CCcEEEccCCCCc-----ccchhhhccCCCCeeeccCcccccccCcchh-----cCCccCceeecccccccccccCC
Q 037851 574 ---DLEILSLQGSKIE-----QLPREIGQLTQLKLLDLSNCSKLKVIAPNVL-----SNLSQLEELYMANCSIEWEHLGP 640 (1053)
Q Consensus 574 ---~L~~L~l~~~~l~-----~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l-----~~l~~L~~L~l~~~~~~~~~~~~ 640 (1053)
+|++|++++|.+. .+|..+.++++|++|++++| .+....+..+ ...++|++|++++|.+....
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~--- 158 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN-LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS--- 158 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG---
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCC-cCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHH---
Confidence 7999999999987 56888999999999999995 4554322222 23678999999999873110
Q ss_pred cccccCCChhhhcCCCCCCeEEEEeccC
Q 037851 641 GIERSNASLDELKNLSRLTSLEINILDA 668 (1053)
Q Consensus 641 ~~~~~~~~~~~L~~l~~L~~L~i~~~~~ 668 (1053)
.......+..+++|+.|+++++..
T Consensus 159 ----~~~l~~~l~~~~~L~~L~L~~n~i 182 (461)
T 1z7x_W 159 ----CEPLASVLRAKPDFKELTVSNNDI 182 (461)
T ss_dssp ----HHHHHHHHHHCTTCCEEECCSSBC
T ss_pred ----HHHHHHHHhhCCCCCEEECcCCCc
Confidence 112345567788999999987653
No 65
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.65 E-value=3.2e-15 Score=172.48 Aligned_cols=243 Identities=22% Similarity=0.334 Sum_probs=179.6
Q ss_pred ceeEEeecCccccCCCcccccCccCcEEEcCCcccCC--ccccCCCCCCcEEEccCCCCcccc-hhhhccCCCCeeeccC
Q 037851 529 KLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDGCELED--IRVIGELKDLEILSLQGSKIEQLP-REIGQLTQLKLLDLSN 605 (1053)
Q Consensus 529 ~Lr~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~ 605 (1053)
..+.++.++..+..+|..+. .++++|+|++|.+.. +..++++++|++|+|++|.+..++ ..+.++++|++|++++
T Consensus 44 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp TSCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 34677888888999998765 789999999999887 478999999999999999999876 6789999999999999
Q ss_pred cccccccCcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCCeEEEEecc-CCCCCCccccccCceEE
Q 037851 606 CSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLEINILD-AGILPSGFFSRKLKRYR 684 (1053)
Q Consensus 606 ~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~-~~~~~~~~~~~~L~~l~ 684 (1053)
+.+..+++..+.++++|++|++++|.+. ......+.++++|+.|+++.+. ...++..
T Consensus 122 -n~l~~~~~~~~~~l~~L~~L~L~~N~i~-----------~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~---------- 179 (440)
T 3zyj_A 122 -NRLTTIPNGAFVYLSKLKELWLRNNPIE-----------SIPSYAFNRIPSLRRLDLGELKRLSYISEG---------- 179 (440)
T ss_dssp -SCCSSCCTTTSCSCSSCCEEECCSCCCC-----------EECTTTTTTCTTCCEEECCCCTTCCEECTT----------
T ss_pred -CcCCeeCHhHhhccccCceeeCCCCccc-----------ccCHHHhhhCcccCEeCCCCCCCcceeCcc----------
Confidence 5788998888999999999999999872 2233457788899999887532 1111111
Q ss_pred EEEcccCCCCCcccccceeeeccCCccccccccccCccceeeccccCCcccccccccccccccccEEEeecCCCceeecC
Q 037851 685 IVVGFQWAPFDKYKTRRTLKLKLNSRICLEEWRGMKNVEYLRLDELPGLTNVLHDLDGEGFAELKHLNVKNNSNFLCIVD 764 (1053)
Q Consensus 685 l~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~i~~ 764 (1053)
.+..+++|++|+++++.- .. ++.+ ..+++|+.|++++|. +..+.
T Consensus 180 ------------------------------~~~~l~~L~~L~L~~n~l-~~-~~~~--~~l~~L~~L~Ls~N~-l~~~~- 223 (440)
T 3zyj_A 180 ------------------------------AFEGLSNLRYLNLAMCNL-RE-IPNL--TPLIKLDELDLSGNH-LSAIR- 223 (440)
T ss_dssp ------------------------------TTTTCSSCCEEECTTSCC-SS-CCCC--TTCSSCCEEECTTSC-CCEEC-
T ss_pred ------------------------------hhhcccccCeecCCCCcC-cc-cccc--CCCcccCEEECCCCc-cCccC-
Confidence 111566777777777532 22 2333 567888888888874 33332
Q ss_pred CcccccCcCCccceeecccccccccccccccCccccCCccEEeEccCCCccccCCchhhhccCCccEEEecccc
Q 037851 765 PLQVRCGAFPMLESLVLQNLINLERICHGQLRAESFCNLKTIKVGSCHKLKNLFSFSIAKFLPQLKTIEVTECK 838 (1053)
Q Consensus 765 ~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~ 838 (1053)
......+++|+.|++.++ .+..+.... ...+++|+.|+++++ +++.+++ ..+..+++|+.|++++|+
T Consensus 224 --~~~~~~l~~L~~L~L~~n-~l~~~~~~~--~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 224 --PGSFQGLMHLQKLWMIQS-QIQVIERNA--FDNLQSLVEINLAHN-NLTLLPH-DLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp --TTTTTTCTTCCEEECTTC-CCCEECTTS--STTCTTCCEEECTTS-CCCCCCT-TTTSSCTTCCEEECCSSC
T ss_pred --hhhhccCccCCEEECCCC-ceeEEChhh--hcCCCCCCEEECCCC-CCCccCh-hHhccccCCCEEEcCCCC
Confidence 122456788888888874 455543222 246789999999887 5777755 356788999999998876
No 66
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.64 E-value=3.4e-16 Score=175.08 Aligned_cols=249 Identities=18% Similarity=0.188 Sum_probs=174.5
Q ss_pred CcceEEeeccCCCCCCCCCcccccCCCceeEEeecCccccCC-CcccccCccCcEEEcCCcccCCc-c-ccCCCCCCcEE
Q 037851 502 KCSRISLYDNNINSPLKIPDNIFIGTPKLKVLDFTRMRLLSL-PSSIHLLTDLRTLCLDGCELEDI-R-VIGELKDLEIL 578 (1053)
Q Consensus 502 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~l-p~~i~~l~~Lr~L~L~~~~~~~~-~-~i~~l~~L~~L 578 (1053)
..+.+.+.++.... ++...|.++++|++|++++|.+..+ |..+.++++|++|++++|.++.. . .++++++|++|
T Consensus 53 ~L~~L~l~~n~i~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 129 (353)
T 2z80_A 53 AVKSLDLSNNRITY---ISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFL 129 (353)
T ss_dssp TCCEEECTTSCCCE---ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEE
T ss_pred cCcEEECCCCcCcc---cCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEE
Confidence 47788887776554 6776788999999999999999977 45799999999999999999883 3 38999999999
Q ss_pred EccCCCCcccch--hhhccCCCCeeeccCcccccccCcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCC
Q 037851 579 SLQGSKIEQLPR--EIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLS 656 (1053)
Q Consensus 579 ~l~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~ 656 (1053)
++++|.+..+|. .+.++++|++|++++|+.+..+++..++++++|++|++++|.+. ......+++++
T Consensus 130 ~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~-----------~~~~~~l~~l~ 198 (353)
T 2z80_A 130 NLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ-----------SYEPKSLKSIQ 198 (353)
T ss_dssp ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC-----------EECTTTTTTCS
T ss_pred ECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcC-----------ccCHHHHhccc
Confidence 999999999987 68999999999999976788888888999999999999999872 33456778899
Q ss_pred CCCeEEEEeccCCCCCCccc--cccCceEEEEEcccCCCCCcccccceeeeccCCccccccccccCccceeeccccCCcc
Q 037851 657 RLTSLEINILDAGILPSGFF--SRKLKRYRIVVGFQWAPFDKYKTRRTLKLKLNSRICLEEWRGMKNVEYLRLDELPGLT 734 (1053)
Q Consensus 657 ~L~~L~i~~~~~~~~~~~~~--~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~ 734 (1053)
+|+.|+++.+....++.... ..+|+.|.+..+...... ...++.....+.++.+++.++.-..
T Consensus 199 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~---------------~~~l~~~~~~~~l~~l~L~~~~l~~ 263 (353)
T 2z80_A 199 NVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFH---------------FSELSTGETNSLIKKFTFRNVKITD 263 (353)
T ss_dssp EEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCC---------------CC------CCCCCCEEEEESCBCCH
T ss_pred cCCeecCCCCccccchhhhhhhcccccEEECCCCcccccc---------------ccccccccccchhhccccccccccC
Confidence 99999999887765554432 256666666433211000 0000000123445555555432211
Q ss_pred c----ccccccccccccccEEEeecCCCceeecCCcccccCcCCccceeeccccc
Q 037851 735 N----VLHDLDGEGFAELKHLNVKNNSNFLCIVDPLQVRCGAFPMLESLVLQNLI 785 (1053)
Q Consensus 735 ~----~~~~l~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~p~L~~L~l~~~~ 785 (1053)
+ ....+ ..+++|+.|++++|. +..++.. ....+++|+.|++++++
T Consensus 264 ~~l~~l~~~l--~~l~~L~~L~Ls~N~-l~~i~~~---~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 264 ESLFQVMKLL--NQISGLLELEFSRNQ-LKSVPDG---IFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp HHHHHHHHHH--HTCTTCCEEECCSSC-CCCCCTT---TTTTCTTCCEEECCSSC
T ss_pred cchhhhHHHH--hcccCCCEEECCCCC-CCccCHH---HHhcCCCCCEEEeeCCC
Confidence 1 11111 456778888887774 3333211 12456778888887753
No 67
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.63 E-value=1.1e-15 Score=167.28 Aligned_cols=153 Identities=27% Similarity=0.273 Sum_probs=126.9
Q ss_pred CcceEEeeccCCCCCCCCCcccccCCCceeEEeecCccccCC---CcccccCccCcEEEcCCcccCC-ccccCCCCCCcE
Q 037851 502 KCSRISLYDNNINSPLKIPDNIFIGTPKLKVLDFTRMRLLSL---PSSIHLLTDLRTLCLDGCELED-IRVIGELKDLEI 577 (1053)
Q Consensus 502 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~l---p~~i~~l~~Lr~L~L~~~~~~~-~~~i~~l~~L~~ 577 (1053)
..+.+.+..+.... +|..+|.++++|++|++++|.+..+ |..+..+.+|++|++++|.+.. +..+..+++|++
T Consensus 29 ~l~~L~L~~n~l~~---i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~ 105 (306)
T 2z66_A 29 SATRLELESNKLQS---LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEH 105 (306)
T ss_dssp TCCEEECCSSCCCC---CCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCE
T ss_pred CCCEEECCCCccCc---cCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCE
Confidence 47888888776653 8888889999999999999998855 6677889999999999999887 567999999999
Q ss_pred EEccCCCCcccch--hhhccCCCCeeeccCcccccccCcchhcCCccCceeecccccccccccCCcccccCCChhhhcCC
Q 037851 578 LSLQGSKIEQLPR--EIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNL 655 (1053)
Q Consensus 578 L~l~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l 655 (1053)
|++++|.+..+|. .+.++++|++|++++| .+...++..+.++++|++|++++|.+.. ...+..+..+
T Consensus 106 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~----------~~~~~~~~~l 174 (306)
T 2z66_A 106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQE----------NFLPDIFTEL 174 (306)
T ss_dssp EECTTSEEESSTTTTTTTTCTTCCEEECTTS-CCEECSTTTTTTCTTCCEEECTTCEEGG----------GEECSCCTTC
T ss_pred EECCCCcccccccchhhhhccCCCEEECCCC-cCCccchhhcccCcCCCEEECCCCcccc----------ccchhHHhhC
Confidence 9999999998874 7899999999999995 6777777778999999999999997621 1234456677
Q ss_pred CCCCeEEEEeccC
Q 037851 656 SRLTSLEINILDA 668 (1053)
Q Consensus 656 ~~L~~L~i~~~~~ 668 (1053)
++|+.|+++++..
T Consensus 175 ~~L~~L~Ls~n~l 187 (306)
T 2z66_A 175 RNLTFLDLSQCQL 187 (306)
T ss_dssp TTCCEEECTTSCC
T ss_pred cCCCEEECCCCCc
Confidence 8888888776543
No 68
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.62 E-value=8.1e-15 Score=158.47 Aligned_cols=124 Identities=19% Similarity=0.332 Sum_probs=67.0
Q ss_pred eEEeecCccccCCCcccccCccCcEEEcCCcccCC--ccccCCCCCCcEEEccCCCCccc-chhhhccCCCCeeeccCcc
Q 037851 531 KVLDFTRMRLLSLPSSIHLLTDLRTLCLDGCELED--IRVIGELKDLEILSLQGSKIEQL-PREIGQLTQLKLLDLSNCS 607 (1053)
Q Consensus 531 r~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~ 607 (1053)
++++.+++.+..+|..+ ..+|++|++++|.+.. +..++.+++|++|++++|.+..+ |..+..+++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 44555555555555433 3456666666666555 23455666666666666666544 4455666666666666643
Q ss_pred cccccCcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCCeEEEEecc
Q 037851 608 KLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLEINILD 667 (1053)
Q Consensus 608 ~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~ 667 (1053)
.+..+++..+.++++|++|++++|.+. ......+.++++|+.|+++.+.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~l~~n~l~-----------~~~~~~~~~l~~L~~L~l~~n~ 140 (285)
T 1ozn_A 92 QLRSVDPATFHGLGRLHTLHLDRCGLQ-----------ELGPGLFRGLAALQYLYLQDNA 140 (285)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTSCCC-----------CCCTTTTTTCTTCCEEECCSSC
T ss_pred CccccCHHHhcCCcCCCEEECCCCcCC-----------EECHhHhhCCcCCCEEECCCCc
Confidence 355554555556666666666665541 1222334455555555555443
No 69
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.60 E-value=1.1e-14 Score=157.38 Aligned_cols=136 Identities=22% Similarity=0.334 Sum_probs=110.0
Q ss_pred CCcccccCCCceeEEeecCccccCCCc-ccccCccCcEEEcCCcccCC--ccccCCCCCCcEEEccCCC-Cccc-chhhh
Q 037851 519 IPDNIFIGTPKLKVLDFTRMRLLSLPS-SIHLLTDLRTLCLDGCELED--IRVIGELKDLEILSLQGSK-IEQL-PREIG 593 (1053)
Q Consensus 519 ~~~~~~~~~~~Lr~L~l~~~~~~~lp~-~i~~l~~Lr~L~L~~~~~~~--~~~i~~l~~L~~L~l~~~~-l~~l-p~~i~ 593 (1053)
+|..+ .+.|+.|++++|.+..+|. .+..+++|++|++++|.+.. +..++.+++|++|++++|. +..+ |..+.
T Consensus 26 ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~ 102 (285)
T 1ozn_A 26 VPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFH 102 (285)
T ss_dssp CCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTT
T ss_pred CCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhc
Confidence 55543 4688999999999988764 68899999999999999877 4678999999999999997 8877 67789
Q ss_pred ccCCCCeeeccCcccccccCcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCCeEEEEeccCC
Q 037851 594 QLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLEINILDAG 669 (1053)
Q Consensus 594 ~L~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~ 669 (1053)
.+++|++|++++ +.+..+++..+.++++|++|++++|.+. ......++.+++|+.|+++++...
T Consensus 103 ~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~-----------~~~~~~~~~l~~L~~L~l~~n~l~ 166 (285)
T 1ozn_A 103 GLGRLHTLHLDR-CGLQELGPGLFRGLAALQYLYLQDNALQ-----------ALPDDTFRDLGNLTHLFLHGNRIS 166 (285)
T ss_dssp TCTTCCEEECTT-SCCCCCCTTTTTTCTTCCEEECCSSCCC-----------CCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCcCCCEEECCC-CcCCEECHhHhhCCcCCCEEECCCCccc-----------ccCHhHhccCCCccEEECCCCccc
Confidence 999999999999 4677777777889999999999998762 222344677888888888766543
No 70
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.60 E-value=4e-14 Score=158.26 Aligned_cols=293 Identities=12% Similarity=0.137 Sum_probs=175.6
Q ss_pred CCCcccccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCc------CHHHHH
Q 037851 149 GKGYEAFESRMSTLKSLQNALLDPDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTP------DIKKVQ 222 (1053)
Q Consensus 149 ~~~~~~~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~------~~~~~~ 222 (1053)
......|+||+++++++.+++..+ +++.|+|++|+|||||++++++.. . ++|+++.... +...+.
T Consensus 8 ~~~~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~ 78 (350)
T 2qen_A 8 KTRREDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHITREELI 78 (350)
T ss_dssp CCSGGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCBCHHHHH
T ss_pred CCChHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCCCHHHHH
Confidence 345567999999999999988653 799999999999999999999864 1 6788776543 566777
Q ss_pred HHHHHHhCC---------------CCCC---CCChhHHHHHHHHHHhcCCcEEEEEcCCCCccc--------hhhhcCCC
Q 037851 223 GELADQLGM---------------QFDE---ESDVPGRARKLYARLQKENKILIILDNIWEDLD--------LEKVGVPS 276 (1053)
Q Consensus 223 ~~i~~~l~~---------------~~~~---~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~--------~~~l~~~~ 276 (1053)
..+.+.+.. .... ..........+.+.....++++||+||++.... +......+
T Consensus 79 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~ 158 (350)
T 2qen_A 79 KELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYA 158 (350)
T ss_dssp HHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHH
Confidence 777766542 0000 112223333333333222489999999976432 11111111
Q ss_pred CCCCCCcEEEEEecChHHHHhh-----------C--CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCC
Q 037851 277 GNDCRGCKVLLTARDRHVLESI-----------G--SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGG 343 (1053)
Q Consensus 277 ~~~~~gs~iivTtR~~~v~~~~-----------~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G 343 (1053)
.....+.++|+|++........ + ...+++.+|+.+|+.+++.+.+...... .-++...+|++.++|
T Consensus 159 ~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~-~~~~~~~~i~~~tgG 237 (350)
T 2qen_A 159 YDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLD-VPENEIEEAVELLDG 237 (350)
T ss_dssp HHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCC-CCHHHHHHHHHHHTT
T ss_pred HHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHhCC
Confidence 1112467899999886542211 1 2378999999999999998765321111 124568899999999
Q ss_pred CchHHHHHHHHHhcCCCHHHHHHHHHHhcCCCCCchhhhHHHhhhhHHhhhccc---ChhhhHHHHHhcCCCCCCCchhH
Q 037851 344 LPIAIVTLAKALRNKTSVSTWKDALRQLKRPSHRNFEGVLAKTYSAIELSYKYL---REEELKKLFLQCSLMGSPQASTL 420 (1053)
Q Consensus 344 lPlai~~~~~~L~~~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~sy~~L---~~~~lk~cfl~~s~fp~~~~~~~ 420 (1053)
+|+++..++..+....+...+. ..+ .+.+...+.-.+..+ ++ ..+..+..+|. . . ....
T Consensus 238 ~P~~l~~~~~~~~~~~~~~~~~---~~~-----------~~~~~~~~~~~l~~l~~~~~-~~~~~l~~la~-g-~-~~~~ 299 (350)
T 2qen_A 238 IPGWLVVFGVEYLRNGDFGRAM---KRT-----------LEVAKGLIMGELEELRRRSP-RYVDILRAIAL-G-Y-NRWS 299 (350)
T ss_dssp CHHHHHHHHHHHHHHCCHHHHH---HHH-----------HHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHT-T-C-CSHH
T ss_pred CHHHHHHHHHHHhccccHhHHH---HHH-----------HHHHHHHHHHHHHHHHhCCh-hHHHHHHHHHh-C-C-CCHH
Confidence 9999999987653322332221 111 011111111111222 55 57888888887 3 2 3344
Q ss_pred HHHHHHHHhccccCccCHHHHHHHHHHHHHHHHhhcccccCCCCeEEe-hHHHHHHHH
Q 037851 421 NLLKYAIGLGIVKGVGTVEEARDKVNTLVDQLRDACLLLDGTNDCFSM-HDVVRDVAI 477 (1053)
Q Consensus 421 ~li~~w~a~g~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~m-Hdlv~~~a~ 477 (1053)
.+.....+.. .+ .+. ..+.++++.|.+.+++... .+.|++ |++++++.+
T Consensus 300 ~l~~~~~~~~--~~-~~~----~~~~~~l~~L~~~gli~~~-~~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 300 LIRDYLAVKG--TK-IPE----PRLYALLENLKKMNWIVEE-DNTYKIADPVVATVLR 349 (350)
T ss_dssp HHHHHHHHTT--CC-CCH----HHHHHHHHHHHHTTSEEEE-TTEEEESSHHHHHHHT
T ss_pred HHHHHHHHHh--CC-CCH----HHHHHHHHHHHhCCCEEec-CCEEEEecHHHHHHHc
Confidence 4444332110 01 111 2234678889999998764 356665 788887653
No 71
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.59 E-value=3.6e-14 Score=168.30 Aligned_cols=235 Identities=23% Similarity=0.193 Sum_probs=173.4
Q ss_pred CCcceEEeeccCCCCCCCCCcccccCCCceeEEeecCccccCCCcccccCccCcEEEcCCcccCCccccCCCCCCcEEEc
Q 037851 501 KKCSRISLYDNNINSPLKIPDNIFIGTPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDGCELEDIRVIGELKDLEILSL 580 (1053)
Q Consensus 501 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~~~~i~~l~~L~~L~l 580 (1053)
...+.+.+..+.+.. +|. .+++|++|++++|.+..+|. .+.+|++|++++|.++.++. .+.+|++|++
T Consensus 61 ~~L~~L~L~~N~l~~---lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~~--~l~~L~~L~L 128 (622)
T 3g06_A 61 AHITTLVIPDNNLTS---LPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHLPA--LPSGLCKLWI 128 (622)
T ss_dssp TTCSEEEECSCCCSC---CCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCCCCC--CCTTCCEEEC
T ss_pred CCCcEEEecCCCCCC---CCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCCCCC--CCCCcCEEEC
Confidence 357888888877653 665 47899999999999999987 78999999999999988554 6899999999
Q ss_pred cCCCCcccchhhhccCCCCeeeccCcccccccCcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCCe
Q 037851 581 QGSKIEQLPREIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTS 660 (1053)
Q Consensus 581 ~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~ 660 (1053)
++|.+..+|.. +++|++|++++| .+..+|. .+.+|+.|++++|.+. . +. ..+++|+.
T Consensus 129 ~~N~l~~lp~~---l~~L~~L~Ls~N-~l~~l~~----~~~~L~~L~L~~N~l~------------~-l~--~~~~~L~~ 185 (622)
T 3g06_A 129 FGNQLTSLPVL---PPGLQELSVSDN-QLASLPA----LPSELCKLWAYNNQLT------------S-LP--MLPSGLQE 185 (622)
T ss_dssp CSSCCSCCCCC---CTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSSCCS------------C-CC--CCCTTCCE
T ss_pred CCCCCCcCCCC---CCCCCEEECcCC-cCCCcCC----ccCCCCEEECCCCCCC------------C-Cc--ccCCCCcE
Confidence 99999999964 589999999995 6777753 3578999999999872 1 11 45688999
Q ss_pred EEEEeccCCCCCCccccccCceEEEEEcccCCCCCcccccceeeeccCCccccccccccCccceeeccccCCcccccccc
Q 037851 661 LEINILDAGILPSGFFSRKLKRYRIVVGFQWAPFDKYKTRRTLKLKLNSRICLEEWRGMKNVEYLRLDELPGLTNVLHDL 740 (1053)
Q Consensus 661 L~i~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l 740 (1053)
|+++.+....+|... .+| +.|.+..+....++. .+++|+.|+++++.- +. ++
T Consensus 186 L~Ls~N~l~~l~~~~--~~L--------------------~~L~L~~N~l~~l~~--~~~~L~~L~Ls~N~L-~~-lp-- 237 (622)
T 3g06_A 186 LSVSDNQLASLPTLP--SEL--------------------YKLWAYNNRLTSLPA--LPSGLKELIVSGNRL-TS-LP-- 237 (622)
T ss_dssp EECCSSCCSCCCCCC--TTC--------------------CEEECCSSCCSSCCC--CCTTCCEEECCSSCC-SC-CC--
T ss_pred EECCCCCCCCCCCcc--chh--------------------hEEECcCCcccccCC--CCCCCCEEEccCCcc-Cc-CC--
Confidence 999988877665432 334 444444444333333 357888888887532 22 22
Q ss_pred cccccccccEEEeecCCCceeecCCcccccCcCCccceeecccccccccccccccCccccCCccEEeEccCC
Q 037851 741 DGEGFAELKHLNVKNNSNFLCIVDPLQVRCGAFPMLESLVLQNLINLERICHGQLRAESFCNLKTIKVGSCH 812 (1053)
Q Consensus 741 ~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L~i~~c~ 812 (1053)
..+++|+.|++++|. +..++. .+++|+.|+++++ .++.++. ....+++|+.|++++++
T Consensus 238 --~~l~~L~~L~Ls~N~-L~~lp~-------~~~~L~~L~Ls~N-~L~~lp~---~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 238 --VLPSELKELMVSGNR-LTSLPM-------LPSGLLSLSVYRN-QLTRLPE---SLIHLSSETTVNLEGNP 295 (622)
T ss_dssp --CCCTTCCEEECCSSC-CSCCCC-------CCTTCCEEECCSS-CCCSCCG---GGGGSCTTCEEECCSCC
T ss_pred --CCCCcCcEEECCCCC-CCcCCc-------ccccCcEEeCCCC-CCCcCCH---HHhhccccCEEEecCCC
Confidence 456889999998874 433321 5678999999885 5665542 23568889999998875
No 72
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.59 E-value=1e-15 Score=168.15 Aligned_cols=251 Identities=16% Similarity=0.108 Sum_probs=141.8
Q ss_pred cccccCCCceeEEeecCccccCCC-cccccCccCcEEEcCCcccCCccccCCCCCCcEEEccCCCCcccchhhhccCCCC
Q 037851 521 DNIFIGTPKLKVLDFTRMRLLSLP-SSIHLLTDLRTLCLDGCELEDIRVIGELKDLEILSLQGSKIEQLPREIGQLTQLK 599 (1053)
Q Consensus 521 ~~~~~~~~~Lr~L~l~~~~~~~lp-~~i~~l~~Lr~L~L~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~ 599 (1053)
..++..+++|+.|++++|.+..++ ..+..+++|++|++++|.+.....++.+++|++|++++|.+..+| .+++|+
T Consensus 27 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~----~~~~L~ 102 (317)
T 3o53_A 27 ASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELL----VGPSIE 102 (317)
T ss_dssp HHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEE----ECTTCC
T ss_pred HHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCcccccc----CCCCcC
Confidence 344555667777777777776654 456777777777777777665434677777777777777766655 236677
Q ss_pred eeeccCcccccccCcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCCeEEEEeccCCCCCCcccccc
Q 037851 600 LLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLEINILDAGILPSGFFSRK 679 (1053)
Q Consensus 600 ~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~ 679 (1053)
+|++++ +.+..+++. .+++|++|++++|.+. ......+..+++|+.|+++.+.....+....
T Consensus 103 ~L~l~~-n~l~~~~~~---~~~~L~~L~l~~N~l~-----------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--- 164 (317)
T 3o53_A 103 TLHAAN-NNISRVSCS---RGQGKKNIYLANNKIT-----------MLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL--- 164 (317)
T ss_dssp EEECCS-SCCSEEEEC---CCSSCEEEECCSSCCC-----------SGGGBCTGGGSSEEEEECTTSCCCEEEGGGG---
T ss_pred EEECCC-CccCCcCcc---ccCCCCEEECCCCCCC-----------CccchhhhccCCCCEEECCCCCCCcccHHHH---
Confidence 777776 355555432 3566777777776652 1122344556666667666554433221110
Q ss_pred CceEEEEEcccCCCCCcccccceeeeccCCccccccccccCccceeeccccCCcccccccccccccccccEEEeecCCCc
Q 037851 680 LKRYRIVVGFQWAPFDKYKTRRTLKLKLNSRICLEEWRGMKNVEYLRLDELPGLTNVLHDLDGEGFAELKHLNVKNNSNF 759 (1053)
Q Consensus 680 L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l 759 (1053)
....+.++.|.+..+....++....+++|+.|+++++.- ....+.+ ..+++|+.|++++|. +
T Consensus 165 --------------~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~--~~l~~L~~L~L~~N~-l 226 (317)
T 3o53_A 165 --------------AASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKL-AFMGPEF--QSAAGVTWISLRNNK-L 226 (317)
T ss_dssp --------------GGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCC-CEECGGG--GGGTTCSEEECTTSC-C
T ss_pred --------------hhccCcCCEEECCCCcCcccccccccccCCEEECCCCcC-Ccchhhh--cccCcccEEECcCCc-c
Confidence 011234444555554444444444567777777777543 2222332 466778888887774 3
Q ss_pred eeecCCcccccCcCCccceeecccccccccccccccCccccCCccEEeEccCCCcccc
Q 037851 760 LCIVDPLQVRCGAFPMLESLVLQNLINLERICHGQLRAESFCNLKTIKVGSCHKLKNL 817 (1053)
Q Consensus 760 ~~i~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L~i~~c~~l~~l 817 (1053)
..++. ....+++|+.|++++++-..... ......+++|+.|++.++..++..
T Consensus 227 ~~l~~----~~~~l~~L~~L~l~~N~~~~~~~--~~~~~~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 227 VLIEK----ALRFSQNLEHFDLRGNGFHCGTL--RDFFSKNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp CEECT----TCCCCTTCCEEECTTCCCBHHHH--HHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred cchhh----HhhcCCCCCEEEccCCCccCcCH--HHHHhccccceEEECCCchhccCC
Confidence 33322 13456777888777743221111 111234667777777766665554
No 73
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.58 E-value=5e-16 Score=170.62 Aligned_cols=263 Identities=18% Similarity=0.107 Sum_probs=185.3
Q ss_pred CceeEEeecCccccCCCc-ccccCccCcEEEcCCcccCC--ccccCCCCCCcEEEccCCCCcccchhhhccCCCCeeecc
Q 037851 528 PKLKVLDFTRMRLLSLPS-SIHLLTDLRTLCLDGCELED--IRVIGELKDLEILSLQGSKIEQLPREIGQLTQLKLLDLS 604 (1053)
Q Consensus 528 ~~Lr~L~l~~~~~~~lp~-~i~~l~~Lr~L~L~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~ 604 (1053)
..++.++++.+.+...+. .+..+++|++|++++|.+.. +..++.+++|++|++++|.+..++. +..+++|++|+++
T Consensus 10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls 88 (317)
T 3o53_A 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLN 88 (317)
T ss_dssp TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECC
T ss_pred CceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECc
Confidence 456777888877765443 34567799999999999887 3578999999999999999987765 8999999999999
Q ss_pred CcccccccCcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCCeEEEEeccCCCCCCccccccCceEE
Q 037851 605 NCSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLEINILDAGILPSGFFSRKLKRYR 684 (1053)
Q Consensus 605 ~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~L~~l~ 684 (1053)
+| .+..++ ..++|++|++++|.+... . ...+++|+.|+++.+....++...
T Consensus 89 ~n-~l~~l~-----~~~~L~~L~l~~n~l~~~-----------~---~~~~~~L~~L~l~~N~l~~~~~~~--------- 139 (317)
T 3o53_A 89 NN-YVQELL-----VGPSIETLHAANNNISRV-----------S---CSRGQGKKNIYLANNKITMLRDLD--------- 139 (317)
T ss_dssp SS-EEEEEE-----ECTTCCEEECCSSCCSEE-----------E---ECCCSSCEEEECCSSCCCSGGGBC---------
T ss_pred CC-cccccc-----CCCCcCEEECCCCccCCc-----------C---ccccCCCCEEECCCCCCCCccchh---------
Confidence 94 566654 348999999999987311 1 123678999999888765544322
Q ss_pred EEEcccCCCCCcccccceeeeccCCccccc--ccc-ccCccceeeccccCCcccccccccccccccccEEEeecCCCcee
Q 037851 685 IVVGFQWAPFDKYKTRRTLKLKLNSRICLE--EWR-GMKNVEYLRLDELPGLTNVLHDLDGEGFAELKHLNVKNNSNFLC 761 (1053)
Q Consensus 685 l~~~~~~~~~~~~~~l~~l~l~~~~~~~~~--~~~-~l~~L~~L~L~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~ 761 (1053)
+...+.++.|++..+.....+ .+. .+++|++|+++++.-. .. +.. ..+++|+.|++++|. +..
T Consensus 140 ---------~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~-~~-~~~--~~l~~L~~L~Ls~N~-l~~ 205 (317)
T 3o53_A 140 ---------EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DV-KGQ--VVFAKLKTLDLSSNK-LAF 205 (317)
T ss_dssp ---------TGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC-EE-ECC--CCCTTCCEEECCSSC-CCE
T ss_pred ---------hhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc-cc-ccc--cccccCCEEECCCCc-CCc
Confidence 122345566666665444332 222 5789999999986532 22 222 358999999999985 444
Q ss_pred ecCCcccccCcCCccceeecccccccccccccccCccccCCccEEeEccCCCccccCCchhhhccCCccEEEecccchhh
Q 037851 762 IVDPLQVRCGAFPMLESLVLQNLINLERICHGQLRAESFCNLKTIKVGSCHKLKNLFSFSIAKFLPQLKTIEVTECKIVE 841 (1053)
Q Consensus 762 i~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~ 841 (1053)
+.. ....+++|+.|+++++ .++.++. ....+++|+.|++++++-.... ....+..+++|+.+++.+|+.+.
T Consensus 206 l~~----~~~~l~~L~~L~L~~N-~l~~l~~---~~~~l~~L~~L~l~~N~~~~~~-~~~~~~~~~~L~~l~l~~~~~l~ 276 (317)
T 3o53_A 206 MGP----EFQSAAGVTWISLRNN-KLVLIEK---ALRFSQNLEHFDLRGNGFHCGT-LRDFFSKNQRVQTVAKQTVKKLT 276 (317)
T ss_dssp ECG----GGGGGTTCSEEECTTS-CCCEECT---TCCCCTTCCEEECTTCCCBHHH-HHHHHHTCHHHHHHHHHHHHHHH
T ss_pred chh----hhcccCcccEEECcCC-cccchhh---HhhcCCCCCEEEccCCCccCcC-HHHHHhccccceEEECCCchhcc
Confidence 332 2456799999999985 5666543 2356899999999998633122 12356788889999988877665
Q ss_pred hH
Q 037851 842 EI 843 (1053)
Q Consensus 842 ~~ 843 (1053)
..
T Consensus 277 ~~ 278 (317)
T 3o53_A 277 GQ 278 (317)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 74
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.56 E-value=1.6e-13 Score=153.77 Aligned_cols=290 Identities=13% Similarity=0.158 Sum_probs=172.0
Q ss_pred CCcccccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCC-----cCHHHHHHH
Q 037851 150 KGYEAFESRMSTLKSLQNALLDPDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDT-----PDIKKVQGE 224 (1053)
Q Consensus 150 ~~~~~~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-----~~~~~~~~~ 224 (1053)
.....|+||+++++.+.+ +.. +++.|+|++|+|||||++++++... . ..+|+++... .+...+...
T Consensus 10 ~~~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~ 80 (357)
T 2fna_A 10 DNRKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELN--L---PYIYLDLRKFEERNYISYKDFLLE 80 (357)
T ss_dssp CSGGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHT--C---CEEEEEGGGGTTCSCCCHHHHHHH
T ss_pred CCHHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcC--C---CEEEEEchhhccccCCCHHHHHHH
Confidence 345679999999999999 755 6999999999999999999998764 1 2578887643 344555555
Q ss_pred HHHHhCC-------------C-----CCCCC-C------hhHHHHHHHHHHhc-C-CcEEEEEcCCCCcc-----chhhh
Q 037851 225 LADQLGM-------------Q-----FDEES-D------VPGRARKLYARLQK-E-NKILIILDNIWEDL-----DLEKV 272 (1053)
Q Consensus 225 i~~~l~~-------------~-----~~~~~-~------~~~~~~~l~~~l~~-~-~~~LlvlDdv~~~~-----~~~~l 272 (1053)
+.+.+.. . .+... . .......+.+.+.+ . ++++||+||++... ++..+
T Consensus 81 l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~~~ 160 (357)
T 2fna_A 81 LQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLPA 160 (357)
T ss_dssp HHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCHHH
T ss_pred HHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhHHHH
Confidence 5443310 0 00000 0 00112344444432 1 48999999996632 22222
Q ss_pred cCCCCCCCCCcEEEEEecChHHHHh-----------hC--CCcccccCCCHHHHHHHHHHHhCC-CCCCccchHHHHHHH
Q 037851 273 GVPSGNDCRGCKVLLTARDRHVLES-----------IG--SKTLRIDVLNDEEAWTLFKKMTGD-CAEKGELKSIATDVA 338 (1053)
Q Consensus 273 ~~~~~~~~~gs~iivTtR~~~v~~~-----------~~--~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~~~i~ 338 (1053)
...+.....+.++|+|+|....... .+ ...+++.+|+.+|+.+++.+.+.. ...... ...|+
T Consensus 161 l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~----~~~i~ 236 (357)
T 2fna_A 161 LAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD----YEVVY 236 (357)
T ss_dssp HHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC----HHHHH
T ss_pred HHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCc----HHHHH
Confidence 2211111246789999998754321 11 247899999999999999876531 111111 27899
Q ss_pred HHhCCCchHHHHHHHHHhcCCCHHHHHHH-HHHhcCCCCCchhhhHHHhhhhHH-hhh--cccChhhhHHHHHhcCCCCC
Q 037851 339 KECGGLPIAIVTLAKALRNKTSVSTWKDA-LRQLKRPSHRNFEGVLAKTYSAIE-LSY--KYLREEELKKLFLQCSLMGS 414 (1053)
Q Consensus 339 ~~~~GlPlai~~~~~~L~~~~~~~~w~~~-l~~l~~~~~~~~~~~~~~~~~~l~-~sy--~~L~~~~lk~cfl~~s~fp~ 414 (1053)
+.++|+|+++..++..+....+...|... .+ .....+...+. +.+ ..+++ ..+..+..+|. .
T Consensus 237 ~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~l~~-~~~~~l~~la~-g- 302 (357)
T 2fna_A 237 EKIGGIPGWLTYFGFIYLDNKNLDFAINQTLE-----------YAKKLILKEFENFLHGREIARK-RYLNIMRTLSK-C- 302 (357)
T ss_dssp HHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHH-----------HHHHHHHHHHHHHHTTCGGGHH-HHHHHHHHHTT-C-
T ss_pred HHhCCCHHHHHHHHHHHccccchHHHHHHHHH-----------HHHHHHHHHHHHHhhccccccH-HHHHHHHHHHc-C-
Confidence 99999999999998876543344333221 11 01111111221 111 15776 57889998887 3
Q ss_pred CCchhHHHHHHHH-HhccccCccCHHHHHHHHHHHHHHHHhhcccccCCCCeEE-ehHHHHHHH
Q 037851 415 PQASTLNLLKYAI-GLGIVKGVGTVEEARDKVNTLVDQLRDACLLLDGTNDCFS-MHDVVRDVA 476 (1053)
Q Consensus 415 ~~~~~~~li~~w~-a~g~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~-mHdlv~~~a 476 (1053)
. +...+..... ..|. ..+. ..+.++++.|.+.+++.... +.|+ .|++++++.
T Consensus 303 ~--~~~~l~~~~~~~~g~---~~~~----~~~~~~L~~L~~~gli~~~~-~~y~f~~~~~~~~l 356 (357)
T 2fna_A 303 G--KWSDVKRALELEEGI---EISD----SEIYNYLTQLTKHSWIIKEG-EKYCPSEPLISLAF 356 (357)
T ss_dssp B--CHHHHHHHHHHHHCS---CCCH----HHHHHHHHHHHHTTSEEESS-SCEEESSHHHHHHT
T ss_pred C--CHHHHHHHHHHhcCC---CCCH----HHHHHHHHHHHhCCCEEecC-CEEEecCHHHHHhh
Confidence 2 3444432211 1120 0111 22346788899999987644 4566 478888763
No 75
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.56 E-value=2.5e-14 Score=153.20 Aligned_cols=134 Identities=26% Similarity=0.401 Sum_probs=102.0
Q ss_pred cCCCceeEEeecCccccCCCcccccCccCcEEEcCCcccCCccccCCCCCCcEEEccCCCCcccchh-hhccCCCCeeec
Q 037851 525 IGTPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDGCELEDIRVIGELKDLEILSLQGSKIEQLPRE-IGQLTQLKLLDL 603 (1053)
Q Consensus 525 ~~~~~Lr~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l 603 (1053)
..+++|+.|+++++.+..++. +..+++|++|++++|.+..++.++.+++|++|++++|.+..+|.. ++++++|++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 116 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSVQG-IQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116 (272)
T ss_dssp HHHTTCCEEECTTSCCCCCTT-GGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ccccceeeeeeCCCCcccccc-cccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence 457788888888888877664 778888888888888888877888888888888888888877654 588888888888
Q ss_pred cCcccccccCcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCCeEEEEeccCCCC
Q 037851 604 SNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLEINILDAGIL 671 (1053)
Q Consensus 604 ~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~ 671 (1053)
++ +.+..+++..++++++|++|++++|.+. ......++.+++|+.|+++.+....+
T Consensus 117 ~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~-----------~~~~~~~~~l~~L~~L~l~~n~l~~~ 172 (272)
T 3rfs_A 117 VE-NQLQSLPDGVFDKLTNLTYLNLAHNQLQ-----------SLPKGVFDKLTNLTELDLSYNQLQSL 172 (272)
T ss_dssp TT-SCCCCCCTTTTTTCTTCCEEECCSSCCC-----------CCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CC-CcCCccCHHHhccCCCCCEEECCCCccC-----------ccCHHHhccCccCCEEECCCCCcCcc
Confidence 88 4677777776788888888888888762 22233456777888888776654433
No 76
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.55 E-value=4.1e-14 Score=154.35 Aligned_cols=125 Identities=23% Similarity=0.393 Sum_probs=81.4
Q ss_pred CCCceeEEeecCccccCCCcccccCccCcEEEcCCcccCCccccCCCCCCcEEEccCCCCcccchhhhccCCCCeeeccC
Q 037851 526 GTPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDGCELEDIRVIGELKDLEILSLQGSKIEQLPREIGQLTQLKLLDLSN 605 (1053)
Q Consensus 526 ~~~~Lr~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~ 605 (1053)
.+++|+.|+++++.+..+| .+..+++|++|++++|.+.....++.+++|++|++++|.+..+| .+.++++|++|++++
T Consensus 39 ~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~ 116 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTS 116 (308)
T ss_dssp HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTT
T ss_pred HcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCC
Confidence 4566777777777776665 46677777777777777666444777777777777777776665 566777777777777
Q ss_pred cccccccCcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCCeEEEEeccC
Q 037851 606 CSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLEINILDA 668 (1053)
Q Consensus 606 ~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~ 668 (1053)
| .+..+++ +.++++|++|++++|.+. .+..+..+++|+.|+++.+..
T Consensus 117 n-~l~~~~~--l~~l~~L~~L~l~~n~l~-------------~~~~l~~l~~L~~L~l~~n~l 163 (308)
T 1h6u_A 117 T-QITDVTP--LAGLSNLQVLYLDLNQIT-------------NISPLAGLTNLQYLSIGNAQV 163 (308)
T ss_dssp S-CCCCCGG--GTTCTTCCEEECCSSCCC-------------CCGGGGGCTTCCEEECCSSCC
T ss_pred C-CCCCchh--hcCCCCCCEEECCCCccC-------------cCccccCCCCccEEEccCCcC
Confidence 3 4555543 667777777777776651 122256666777776665543
No 77
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.54 E-value=3.1e-15 Score=163.90 Aligned_cols=136 Identities=18% Similarity=0.206 Sum_probs=93.0
Q ss_pred CCcccccCCCceeEEeecCcccc--CCCcccc-------cCccCcEEEcCCcccCC--cccc--CCCCCCcEEEccCCCC
Q 037851 519 IPDNIFIGTPKLKVLDFTRMRLL--SLPSSIH-------LLTDLRTLCLDGCELED--IRVI--GELKDLEILSLQGSKI 585 (1053)
Q Consensus 519 ~~~~~~~~~~~Lr~L~l~~~~~~--~lp~~i~-------~l~~Lr~L~L~~~~~~~--~~~i--~~l~~L~~L~l~~~~l 585 (1053)
+|..+... |+.|++++|.+. .+|..+. .+.+|++|++++|.+.. |..+ +.+++|++|++++|.+
T Consensus 57 ~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l 133 (312)
T 1wwl_A 57 DLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSW 133 (312)
T ss_dssp CCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBC
T ss_pred cHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCC
Confidence 56655432 777788887775 3565554 67888888888888764 4544 7888888888888888
Q ss_pred cccchhhhcc-----CCCCeeeccCcccccccCcchhcCCccCceeecccccccccccCCcccccCCChhhh--cCCCCC
Q 037851 586 EQLPREIGQL-----TQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDEL--KNLSRL 658 (1053)
Q Consensus 586 ~~lp~~i~~L-----~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L--~~l~~L 658 (1053)
..+|..++.+ ++|++|++++ +.+..+++..++++++|++|++++|.+... ...+..+ +.+++|
T Consensus 134 ~~~~~~~~~l~~~~~~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~---------~~~~~~~~~~~l~~L 203 (312)
T 1wwl_A 134 ATRDAWLAELQQWLKPGLKVLSIAQ-AHSLNFSCEQVRVFPALSTLDLSDNPELGE---------RGLISALCPLKFPTL 203 (312)
T ss_dssp SSSSSHHHHHHTTCCTTCCEEEEES-CSCCCCCTTTCCCCSSCCEEECCSCTTCHH---------HHHHHHSCTTSCTTC
T ss_pred cchhHHHHHHHHhhcCCCcEEEeeC-CCCccchHHHhccCCCCCEEECCCCCcCcc---------hHHHHHHHhccCCCC
Confidence 8777777777 7888888888 467777767778888888888888764210 0112233 566666
Q ss_pred CeEEEEecc
Q 037851 659 TSLEINILD 667 (1053)
Q Consensus 659 ~~L~i~~~~ 667 (1053)
+.|+++++.
T Consensus 204 ~~L~L~~N~ 212 (312)
T 1wwl_A 204 QVLALRNAG 212 (312)
T ss_dssp CEEECTTSC
T ss_pred CEEECCCCc
Confidence 666665543
No 78
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.54 E-value=1.2e-13 Score=147.85 Aligned_cols=130 Identities=31% Similarity=0.453 Sum_probs=82.8
Q ss_pred CceeEEeecCccccCCCc-ccccCccCcEEEcCCcccCCc--cccCCCCCCcEEEccCCCCcccchh-hhccCCCCeeec
Q 037851 528 PKLKVLDFTRMRLLSLPS-SIHLLTDLRTLCLDGCELEDI--RVIGELKDLEILSLQGSKIEQLPRE-IGQLTQLKLLDL 603 (1053)
Q Consensus 528 ~~Lr~L~l~~~~~~~lp~-~i~~l~~Lr~L~L~~~~~~~~--~~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l 603 (1053)
+.++.|++++|.+..+|. .+..+++|++|++++|.+..+ ..+..+++|++|++++|.+..+|.. +..+++|++|++
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 116 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL 116 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence 456777777777776654 566777777777777776662 3346677777777777777766543 466777777777
Q ss_pred cCcccccccCcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCCeEEEEeccCC
Q 037851 604 SNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLEINILDAG 669 (1053)
Q Consensus 604 ~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~ 669 (1053)
++ +.+..+++..++++++|++|++++|.+. ......+..+++|+.|+++.+...
T Consensus 117 ~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-----------~~~~~~~~~l~~L~~L~L~~n~l~ 170 (270)
T 2o6q_A 117 DR-NQLKSLPPRVFDSLTKLTYLSLGYNELQ-----------SLPKGVFDKLTSLKELRLYNNQLK 170 (270)
T ss_dssp CS-SCCCCCCTTTTTTCTTCCEEECCSSCCC-----------CCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CC-CccCeeCHHHhCcCcCCCEEECCCCcCC-----------ccCHhHccCCcccceeEecCCcCc
Confidence 76 4566666666667777777777776651 112223556666666666655443
No 79
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.53 E-value=1.6e-13 Score=157.18 Aligned_cols=290 Identities=14% Similarity=0.079 Sum_probs=174.7
Q ss_pred ccccchHHHHHHHHHHh-c----C--CCeeEEEE--EcCCCCcHHHHHHHHHHHhhhc---CCCC-eEEEEEEcCCcCHH
Q 037851 153 EAFESRMSTLKSLQNAL-L----D--PDVTITGV--YGMGGLGKTTLVKEVARQVKKD---KHFD-EVVFAEVSDTPDIK 219 (1053)
Q Consensus 153 ~~~~gR~~~~~~l~~~l-~----~--~~~~vi~I--~G~~GiGKTtLa~~v~~~~~~~---~~f~-~~~wv~~s~~~~~~ 219 (1053)
..++||+++++++.+++ . . ...+.+.| +|++|+||||||+.+++..... ..++ .++|+++....+..
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLY 101 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHH
Confidence 57999999999999888 3 2 24566777 9999999999999999886532 1222 36788877778899
Q ss_pred HHHHHHHHHhCCCCCCC-CChhHHHHHHHHHHh-cCCcEEEEEcCCCCcc--------chhhhcCCC---CCCC--CCcE
Q 037851 220 KVQGELADQLGMQFDEE-SDVPGRARKLYARLQ-KENKILIILDNIWEDL--------DLEKVGVPS---GNDC--RGCK 284 (1053)
Q Consensus 220 ~~~~~i~~~l~~~~~~~-~~~~~~~~~l~~~l~-~~~~~LlvlDdv~~~~--------~~~~l~~~~---~~~~--~gs~ 284 (1053)
.++..++++++...... .........+.+.+. .+++++|||||++... .+..+...+ ...+ .+..
T Consensus 102 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~ 181 (412)
T 1w5s_A 102 TILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIG 181 (412)
T ss_dssp HHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEE
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEE
Confidence 99999999997653321 122234455555553 3679999999997642 222221211 1112 3455
Q ss_pred EEEEecChHHHHh--------hC--CCcccccCCCHHHHHHHHHHHhCCC-CCCccchHHHHHHHHHhC------CCchH
Q 037851 285 VLLTARDRHVLES--------IG--SKTLRIDVLNDEEAWTLFKKMTGDC-AEKGELKSIATDVAKECG------GLPIA 347 (1053)
Q Consensus 285 iivTtR~~~v~~~--------~~--~~~~~l~~L~~~~~~~lf~~~~~~~-~~~~~~~~~~~~i~~~~~------GlPla 347 (1053)
+|+||+...+... .. ...+++.+++.++++++|...+... ....--.+....|++.++ |.|..
T Consensus 182 lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~p~~ 261 (412)
T 1w5s_A 182 FLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSARR 261 (412)
T ss_dssp EEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCHHH
T ss_pred EEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCcHHH
Confidence 8888876653311 11 2338999999999999997664210 111122467889999999 99976
Q ss_pred HHHHHHHHh-----cC---CCHHHHHHHHHHhcCCCCCchhhhHHHhhhhHHhhhcccChhhhHHHHHhcCCCC---CCC
Q 037851 348 IVTLAKALR-----NK---TSVSTWKDALRQLKRPSHRNFEGVLAKTYSAIELSYKYLREEELKKLFLQCSLMG---SPQ 416 (1053)
Q Consensus 348 i~~~~~~L~-----~~---~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~cfl~~s~fp---~~~ 416 (1053)
+..+..... .. -+.+.+..++..... ...+.-++..||+ +.+.++..++.+. ...
T Consensus 262 ~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~-------------~~~~~~~l~~l~~-~~~~~l~aia~l~~~~~~~ 327 (412)
T 1w5s_A 262 AIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA-------------ASIQTHELEALSI-HELIILRLIAEATLGGMEW 327 (412)
T ss_dssp HHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC-------------------CCSSSSSCH-HHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc-------------cchHHHHHHcCCH-HHHHHHHHHHHHHhcCCCC
Confidence 655543321 11 123333333322110 2334556788997 5688888777542 123
Q ss_pred chhHHHHHHHHHh--cccc-CccCHHHHHHHHHHHHHHHHhhccccc
Q 037851 417 ASTLNLLKYAIGL--GIVK-GVGTVEEARDKVNTLVDQLRDACLLLD 460 (1053)
Q Consensus 417 ~~~~~li~~w~a~--g~~~-~~~~~~~~~~~~~~~~~~L~~~~l~~~ 460 (1053)
+...++...+... .... ...+ ...+.++++.|.+.+++..
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~L~~~gli~~ 370 (412)
T 1w5s_A 328 INAGLLRQRYEDASLTMYNVKPRG----YTQYHIYLKHLTSLGLVDA 370 (412)
T ss_dssp BCHHHHHHHHHHHHHHHSCCCCCC----HHHHHHHHHHHHHTTSEEE
T ss_pred ccHHHHHHHHHHHHHhhcCCCCCC----HHHHHHHHHHHHhCCCEEe
Confidence 5555554443211 1111 0011 1234467888999999864
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.52 E-value=9.9e-14 Score=149.67 Aligned_cols=181 Identities=24% Similarity=0.353 Sum_probs=130.6
Q ss_pred CCcccccCCCceeEEeecCccccCC-CcccccCccCcEEEcCCcccCCccccCCCCCCcEEEccCCCCcccchhhhccCC
Q 037851 519 IPDNIFIGTPKLKVLDFTRMRLLSL-PSSIHLLTDLRTLCLDGCELEDIRVIGELKDLEILSLQGSKIEQLPREIGQLTQ 597 (1053)
Q Consensus 519 ~~~~~~~~~~~Lr~L~l~~~~~~~l-p~~i~~l~~Lr~L~L~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~ 597 (1053)
+|..++ +.+++|++++|.+..+ |..+..+++|++|++++|.+..++..+.+++|++|++++|.+..+|..+..+++
T Consensus 25 ip~~~~---~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~ 101 (290)
T 1p9a_G 25 LPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPA 101 (290)
T ss_dssp CCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCCCTTTCTT
T ss_pred CCCCCC---CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCCCcCCcCchhhccCCC
Confidence 666553 5788888888888866 456888888888888888888755558888888888888888888888888888
Q ss_pred CCeeeccCcccccccCcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCCeEEEEeccCCCCCCcccc
Q 037851 598 LKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLEINILDAGILPSGFFS 677 (1053)
Q Consensus 598 L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~ 677 (1053)
|++|++++ +.+..+++..+.++++|++|++++|.+. ......+..+++|+.|+++.+....++...+
T Consensus 102 L~~L~l~~-N~l~~l~~~~~~~l~~L~~L~L~~N~l~-----------~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~- 168 (290)
T 1p9a_G 102 LTVLDVSF-NRLTSLPLGALRGLGELQELYLKGNELK-----------TLPPGLLTPTPKLEKLSLANNNLTELPAGLL- 168 (290)
T ss_dssp CCEEECCS-SCCCCCCSSTTTTCTTCCEEECTTSCCC-----------CCCTTTTTTCTTCCEEECTTSCCSCCCTTTT-
T ss_pred CCEEECCC-CcCcccCHHHHcCCCCCCEEECCCCCCC-----------ccChhhcccccCCCEEECCCCcCCccCHHHh-
Confidence 88888888 5777887777888888888888888762 2223345677888888887776555544321
Q ss_pred ccCceEEEEEcccCCCCCcccccceeeeccCCccccccccccCccceeeccccCCcccccccccccccccccEEEeecCC
Q 037851 678 RKLKRYRIVVGFQWAPFDKYKTRRTLKLKLNSRICLEEWRGMKNVEYLRLDELPGLTNVLHDLDGEGFAELKHLNVKNNS 757 (1053)
Q Consensus 678 ~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~ 757 (1053)
..+++|+.|+++++.- +.....+ ...++|+.|++.+++
T Consensus 169 ---------------------------------------~~l~~L~~L~L~~N~l-~~ip~~~--~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 169 ---------------------------------------NGLENLDTLLLQENSL-YTIPKGF--FGSHLLPFAFLHGNP 206 (290)
T ss_dssp ---------------------------------------TTCTTCCEEECCSSCC-CCCCTTT--TTTCCCSEEECCSCC
T ss_pred ---------------------------------------cCcCCCCEEECCCCcC-CccChhh--cccccCCeEEeCCCC
Confidence 1456677777776432 2222222 345678888888876
No 81
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.52 E-value=9.2e-14 Score=149.37 Aligned_cols=140 Identities=27% Similarity=0.336 Sum_probs=109.7
Q ss_pred CCcccccCCCceeEEeecCccccCCCc-ccccCccCcEEEcCCcccCC--ccccCCCCCCcEEEccCCCCcccc-hhhhc
Q 037851 519 IPDNIFIGTPKLKVLDFTRMRLLSLPS-SIHLLTDLRTLCLDGCELED--IRVIGELKDLEILSLQGSKIEQLP-REIGQ 594 (1053)
Q Consensus 519 ~~~~~~~~~~~Lr~L~l~~~~~~~lp~-~i~~l~~Lr~L~L~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~lp-~~i~~ 594 (1053)
+|..+ .+.|++|++++|.+..++. .+.++++|++|++++|.+.. +..++.+++|++|++++|.+..+| ..+.+
T Consensus 22 ip~~l---~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 98 (276)
T 2z62_A 22 IPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 98 (276)
T ss_dssp CCSSS---CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred cCCCC---CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcC
Confidence 55543 2478999999999887765 78889999999999998877 346888999999999999988776 56888
Q ss_pred cCCCCeeeccCcccccccCcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCCeEEEEeccCCCCC
Q 037851 595 LTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLEINILDAGILP 672 (1053)
Q Consensus 595 L~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~ 672 (1053)
+++|++|++++ +.+..+++..++++++|++|++++|.+. ....+..+.++++|+.|+++++....++
T Consensus 99 l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~----------~~~l~~~~~~l~~L~~L~Ls~N~l~~~~ 165 (276)
T 2z62_A 99 LSSLQKLVAVE-TNLASLENFPIGHLKTLKELNVAHNLIQ----------SFKLPEYFSNLTNLEHLDLSSNKIQSIY 165 (276)
T ss_dssp CTTCCEEECTT-SCCCCSTTCCCTTCTTCCEEECCSSCCC----------CCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred CccccEEECCC-CCccccCchhcccCCCCCEEECcCCccc----------eecCchhhccCCCCCEEECCCCCCCcCC
Confidence 99999999988 4677776666888999999999988762 1123566788889999988877655443
No 82
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.52 E-value=3.7e-14 Score=165.03 Aligned_cols=236 Identities=17% Similarity=0.148 Sum_probs=154.1
Q ss_pred CCceeEEeecCccccCCC-cccccCccCcEEEcCCcccCCccccCCCCCCcEEEccCCCCcccchhhhccCCCCeeeccC
Q 037851 527 TPKLKVLDFTRMRLLSLP-SSIHLLTDLRTLCLDGCELEDIRVIGELKDLEILSLQGSKIEQLPREIGQLTQLKLLDLSN 605 (1053)
Q Consensus 527 ~~~Lr~L~l~~~~~~~lp-~~i~~l~~Lr~L~L~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~ 605 (1053)
+++|++|++++|.+..+| ..+..+++|++|+|++|.+.....++.+++|++|++++|.+..+|. .++|++|++++
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L~~ 108 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLV----GPSIETLHAAN 108 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEE----CTTCCEEECCS
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCC----CCCcCEEECcC
Confidence 448999999999998764 5788999999999999998874448999999999999998887774 38899999998
Q ss_pred cccccccCcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCCeEEEEeccCCCCCCccccccCceEEE
Q 037851 606 CSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLEINILDAGILPSGFFSRKLKRYRI 685 (1053)
Q Consensus 606 ~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~L~~l~l 685 (1053)
+.+..+++. .+++|+.|++++|.+. ......++++++|+.|+++++.....+.
T Consensus 109 -N~l~~~~~~---~l~~L~~L~L~~N~l~-----------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~------------ 161 (487)
T 3oja_A 109 -NNISRVSCS---RGQGKKNIYLANNKIT-----------MLRDLDEGCRSRVQYLDLKLNEIDTVNF------------ 161 (487)
T ss_dssp -SCCCCEEEC---CCSSCEEEECCSSCCC-----------SGGGBCGGGGSSEEEEECTTSCCCEEEG------------
T ss_pred -CcCCCCCcc---ccCCCCEEECCCCCCC-----------CCCchhhcCCCCCCEEECCCCCCCCcCh------------
Confidence 467766553 4688999999988872 2233456778888888887665332111
Q ss_pred EEcccCCCCCcccccceeeeccCCcccccccc-ccCccceeeccccCCcccccccccccccccccEEEeecCCCceeecC
Q 037851 686 VVGFQWAPFDKYKTRRTLKLKLNSRICLEEWR-GMKNVEYLRLDELPGLTNVLHDLDGEGFAELKHLNVKNNSNFLCIVD 764 (1053)
Q Consensus 686 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~-~l~~L~~L~L~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~i~~ 764 (1053)
+.+. .+++|+.|+|+++.-. .. +.. ..+++|+.|++++|. +..++.
T Consensus 162 ----------------------------~~l~~~l~~L~~L~Ls~N~l~-~~-~~~--~~l~~L~~L~Ls~N~-l~~~~~ 208 (487)
T 3oja_A 162 ----------------------------AELAASSDTLEHLNLQYNFIY-DV-KGQ--VVFAKLKTLDLSSNK-LAFMGP 208 (487)
T ss_dssp ----------------------------GGGGGGTTTCCEEECTTSCCC-EE-ECC--CCCTTCCEEECCSSC-CCEECG
T ss_pred ----------------------------HHHhhhCCcccEEecCCCccc-cc-ccc--ccCCCCCEEECCCCC-CCCCCH
Confidence 0111 3566667777665422 21 222 246777777777764 333322
Q ss_pred CcccccCcCCccceeecccccccccccccccCccccCCccEEeEccCCCccccCCchhhhccCCccEEEec
Q 037851 765 PLQVRCGAFPMLESLVLQNLINLERICHGQLRAESFCNLKTIKVGSCHKLKNLFSFSIAKFLPQLKTIEVT 835 (1053)
Q Consensus 765 ~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~l~ 835 (1053)
....+++|+.|++++ +.+..++.. ...+++|+.|++.+++-....++ ..+..+++|+.+.+.
T Consensus 209 ----~~~~l~~L~~L~Ls~-N~l~~lp~~---l~~l~~L~~L~l~~N~l~c~~~~-~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 209 ----EFQSAAGVTWISLRN-NKLVLIEKA---LRFSQNLEHFDLRGNGFHCGTLR-DFFSKNQRVQTVAKQ 270 (487)
T ss_dssp ----GGGGGTTCSEEECTT-SCCCEECTT---CCCCTTCCEEECTTCCBCHHHHH-HHHTTCHHHHHHHHH
T ss_pred ----hHcCCCCccEEEecC-CcCcccchh---hccCCCCCEEEcCCCCCcCcchH-HHHHhCCCCcEEecc
Confidence 134567777777777 345544322 34567888888887753211111 234445555555544
No 83
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.51 E-value=2.9e-13 Score=145.44 Aligned_cols=123 Identities=17% Similarity=0.251 Sum_probs=98.9
Q ss_pred EeecCccccCCCcccccCccCcEEEcCCcccCCc--cccCCCCCCcEEEccCCCCcccch-hhhccCCCCeeeccCcccc
Q 037851 533 LDFTRMRLLSLPSSIHLLTDLRTLCLDGCELEDI--RVIGELKDLEILSLQGSKIEQLPR-EIGQLTQLKLLDLSNCSKL 609 (1053)
Q Consensus 533 L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~~--~~i~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l 609 (1053)
.+.++..+..+|..+. .+|++|++++|.+... ..++++++|++|++++|.+..+|. .+.++++|++|++++ +.+
T Consensus 12 ~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l 88 (276)
T 2z62_A 12 YQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG-NPI 88 (276)
T ss_dssp EECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTT-CCC
T ss_pred EEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCC-Ccc
Confidence 4555666777888664 5899999999999873 489999999999999999998865 689999999999999 578
Q ss_pred cccCcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCCeEEEEeccCC
Q 037851 610 KVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLEINILDAG 669 (1053)
Q Consensus 610 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~ 669 (1053)
..+++..+.++++|++|++.+|.+. ......++++++|+.|+++.+...
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~n~l~-----------~~~~~~~~~l~~L~~L~l~~n~l~ 137 (276)
T 2z62_A 89 QSLALGAFSGLSSLQKLVAVETNLA-----------SLENFPIGHLKTLKELNVAHNLIQ 137 (276)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCC-----------CSTTCCCTTCTTCCEEECCSSCCC
T ss_pred CccChhhhcCCccccEEECCCCCcc-----------ccCchhcccCCCCCEEECcCCccc
Confidence 8888788999999999999998762 122224677888888888766543
No 84
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.50 E-value=3.4e-13 Score=144.21 Aligned_cols=195 Identities=25% Similarity=0.404 Sum_probs=128.4
Q ss_pred ceeEEeecCccccCCCcccccCccCcEEEcCCcccCCc--cccCCCCCCcEEEccCCCCcccchhh-hccCCCCeeeccC
Q 037851 529 KLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDGCELEDI--RVIGELKDLEILSLQGSKIEQLPREI-GQLTQLKLLDLSN 605 (1053)
Q Consensus 529 ~Lr~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~~--~~i~~l~~L~~L~l~~~~l~~lp~~i-~~L~~L~~L~l~~ 605 (1053)
..+.++++++.++.+|..+. .+|++|++++|.+..+ ..++++++|++|++++|.+..+|..+ .++++|++|++++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 45677788888777776554 5788888888887763 46778888888888888888777654 6788888888887
Q ss_pred cccccccCcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCCeEEEEeccCCCCCCccccccCceEEE
Q 037851 606 CSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLEINILDAGILPSGFFSRKLKRYRI 685 (1053)
Q Consensus 606 ~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~L~~l~l 685 (1053)
+.+..+++..+.++++|++|++++|.+. ......++.+++|+.|+++.+....++...+
T Consensus 95 -n~l~~~~~~~~~~l~~L~~L~l~~n~l~-----------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--------- 153 (270)
T 2o6q_A 95 -NKLQALPIGVFDQLVNLAELRLDRNQLK-----------SLPPRVFDSLTKLTYLSLGYNELQSLPKGVF--------- 153 (270)
T ss_dssp -SCCCCCCTTTTTTCSSCCEEECCSSCCC-----------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTT---------
T ss_pred -CcCCcCCHhHcccccCCCEEECCCCccC-----------eeCHHHhCcCcCCCEEECCCCcCCccCHhHc---------
Confidence 4677777766777888888888877662 2233446677788888887776655554321
Q ss_pred EEcccCCCCCcccccceeeeccCCcccccc--ccccCccceeeccccCCcccccccccccccccccEEEeecCC
Q 037851 686 VVGFQWAPFDKYKTRRTLKLKLNSRICLEE--WRGMKNVEYLRLDELPGLTNVLHDLDGEGFAELKHLNVKNNS 757 (1053)
Q Consensus 686 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~--~~~l~~L~~L~L~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~ 757 (1053)
...+.++.|.+..+....++. +..+++|++|+++++.- +...+. ....+++|+.|++++++
T Consensus 154 ---------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~-~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 154 ---------DKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL-KRVPEG-AFDSLEKLKMLQLQENP 216 (270)
T ss_dssp ---------TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCC-SCCCTT-TTTTCTTCCEEECCSSC
T ss_pred ---------cCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcC-CcCCHH-HhccccCCCEEEecCCC
Confidence 122344445555444333333 22577788888877532 222221 12467888888888876
No 85
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.50 E-value=1e-13 Score=161.22 Aligned_cols=224 Identities=20% Similarity=0.162 Sum_probs=147.2
Q ss_pred CCCcccccC----ccCcEEEcCCcccCC--ccccCCCCCCcEEEccCCCCcccchhhhccCCCCeeeccCcccccccCcc
Q 037851 542 SLPSSIHLL----TDLRTLCLDGCELED--IRVIGELKDLEILSLQGSKIEQLPREIGQLTQLKLLDLSNCSKLKVIAPN 615 (1053)
Q Consensus 542 ~lp~~i~~l----~~Lr~L~L~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~ 615 (1053)
.+|..+..+ ++|++|+|++|.+.. +..++.+++|++|+|++|.+...++ ++.+++|++|++++| .+..+++
T Consensus 21 ~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~~- 97 (487)
T 3oja_A 21 SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN-YVQELLV- 97 (487)
T ss_dssp THHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSS-EEEEEEE-
T ss_pred hhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCC-cCCCCCC-
Confidence 345544444 489999999999887 4689999999999999999986665 899999999999994 6776653
Q ss_pred hhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCCeEEEEeccCCCCCCccccccCceEEEEEcccCCCCC
Q 037851 616 VLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLEINILDAGILPSGFFSRKLKRYRIVVGFQWAPFD 695 (1053)
Q Consensus 616 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~ 695 (1053)
.++|++|++++|.+... . ...+++|+.|+++++....++..
T Consensus 98 ----~~~L~~L~L~~N~l~~~-----------~---~~~l~~L~~L~L~~N~l~~~~~~--------------------- 138 (487)
T 3oja_A 98 ----GPSIETLHAANNNISRV-----------S---CSRGQGKKNIYLANNKITMLRDL--------------------- 138 (487)
T ss_dssp ----CTTCCEEECCSSCCCCE-----------E---ECCCSSCEEEECCSSCCCSGGGB---------------------
T ss_pred ----CCCcCEEECcCCcCCCC-----------C---ccccCCCCEEECCCCCCCCCCch---------------------
Confidence 38899999999876311 1 12356677777766553322111
Q ss_pred cccccceeeeccCCccccccccccCccceeeccccCCcccccccccccccccccEEEeecCCCceeecCCcccccCcCCc
Q 037851 696 KYKTRRTLKLKLNSRICLEEWRGMKNVEYLRLDELPGLTNVLHDLDGEGFAELKHLNVKNNSNFLCIVDPLQVRCGAFPM 775 (1053)
Q Consensus 696 ~~~~l~~l~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~p~ 775 (1053)
.+..+++|+.|+++++.-... .+......+++|+.|++++|. +..+. ....+++
T Consensus 139 -------------------~~~~l~~L~~L~Ls~N~l~~~-~~~~l~~~l~~L~~L~Ls~N~-l~~~~-----~~~~l~~ 192 (487)
T 3oja_A 139 -------------------DEGCRSRVQYLDLKLNEIDTV-NFAELAASSDTLEHLNLQYNF-IYDVK-----GQVVFAK 192 (487)
T ss_dssp -------------------CGGGGSSEEEEECTTSCCCEE-EGGGGGGGTTTCCEEECTTSC-CCEEE-----CCCCCTT
T ss_pred -------------------hhcCCCCCCEEECCCCCCCCc-ChHHHhhhCCcccEEecCCCc-ccccc-----ccccCCC
Confidence 111567788888887543322 222212357888888888875 33321 1224677
Q ss_pred cceeecccccccccccccccCccccCCccEEeEccCCCccccCCchhhhccCCccEEEecccchh
Q 037851 776 LESLVLQNLINLERICHGQLRAESFCNLKTIKVGSCHKLKNLFSFSIAKFLPQLKTIEVTECKIV 840 (1053)
Q Consensus 776 L~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l 840 (1053)
|+.|+++++ .+..++.. ...+++|+.|++++|. +..+|+ .+..+++|+.|++++|+..
T Consensus 193 L~~L~Ls~N-~l~~~~~~---~~~l~~L~~L~Ls~N~-l~~lp~--~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 193 LKTLDLSSN-KLAFMGPE---FQSAAGVTWISLRNNK-LVLIEK--ALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CCEEECCSS-CCCEECGG---GGGGTTCSEEECTTSC-CCEECT--TCCCCTTCCEEECTTCCBC
T ss_pred CCEEECCCC-CCCCCCHh---HcCCCCccEEEecCCc-Ccccch--hhccCCCCCEEEcCCCCCc
Confidence 888888773 45544322 3456777777777763 556554 3556777777777776544
No 86
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.50 E-value=2.3e-13 Score=148.31 Aligned_cols=186 Identities=22% Similarity=0.338 Sum_probs=148.7
Q ss_pred cceEEeeccCCCCCCCCCcccccCCCceeEEeecCccccCCCcccccCccCcEEEcCCcccCCccccCCCCCCcEEEccC
Q 037851 503 CSRISLYDNNINSPLKIPDNIFIGTPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDGCELEDIRVIGELKDLEILSLQG 582 (1053)
Q Consensus 503 ~~~l~l~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~~~~i~~l~~L~~L~l~~ 582 (1053)
.+.+.+.++.... ++. +..+++|++|++++|.+..+|. +..+++|++|++++|.+..++.++.+++|++|++++
T Consensus 43 L~~L~l~~~~i~~---l~~--~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~ 116 (308)
T 1h6u_A 43 ITTLSAFGTGVTT---IEG--VQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTS 116 (308)
T ss_dssp CCEEECTTSCCCC---CTT--GGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTT
T ss_pred cCEEEeeCCCccC---chh--hhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCC
Confidence 5666666554443 442 5789999999999999999888 999999999999999999988999999999999999
Q ss_pred CCCcccchhhhccCCCCeeeccCcccccccCcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCCeEE
Q 037851 583 SKIEQLPREIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLE 662 (1053)
Q Consensus 583 ~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~ 662 (1053)
|.+..+|. +..+++|++|++++| .+..+++ ++++++|++|++++|.+. .+..+..+++|+.|+
T Consensus 117 n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~-------------~~~~l~~l~~L~~L~ 179 (308)
T 1h6u_A 117 TQITDVTP-LAGLSNLQVLYLDLN-QITNISP--LAGLTNLQYLSIGNAQVS-------------DLTPLANLSKLTTLK 179 (308)
T ss_dssp SCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG--GGGCTTCCEEECCSSCCC-------------CCGGGTTCTTCCEEE
T ss_pred CCCCCchh-hcCCCCCCEEECCCC-ccCcCcc--ccCCCCccEEEccCCcCC-------------CChhhcCCCCCCEEE
Confidence 99999885 999999999999994 6777765 889999999999999762 233388899999999
Q ss_pred EEeccCCCCCCccccccCceEEEEEcccCCCCCcccccceeeeccCCccccccccccCccceeeccccCCcccccccccc
Q 037851 663 INILDAGILPSGFFSRKLKRYRIVVGFQWAPFDKYKTRRTLKLKLNSRICLEEWRGMKNVEYLRLDELPGLTNVLHDLDG 742 (1053)
Q Consensus 663 i~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~ 742 (1053)
++.+....++. +..+++|++|+++++.-. ... .+
T Consensus 180 l~~n~l~~~~~------------------------------------------l~~l~~L~~L~L~~N~l~-~~~-~l-- 213 (308)
T 1h6u_A 180 ADDNKISDISP------------------------------------------LASLPNLIEVHLKNNQIS-DVS-PL-- 213 (308)
T ss_dssp CCSSCCCCCGG------------------------------------------GGGCTTCCEEECTTSCCC-BCG-GG--
T ss_pred CCCCccCcChh------------------------------------------hcCCCCCCEEEccCCccC-ccc-cc--
Confidence 88776543321 125677888888876432 222 23
Q ss_pred cccccccEEEeecCC
Q 037851 743 EGFAELKHLNVKNNS 757 (1053)
Q Consensus 743 ~~l~~L~~L~l~~~~ 757 (1053)
..+++|+.|++++++
T Consensus 214 ~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 214 ANTSNLFIVTLTNQT 228 (308)
T ss_dssp TTCTTCCEEEEEEEE
T ss_pred cCCCCCCEEEccCCe
Confidence 678899999998886
No 87
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.50 E-value=2.6e-13 Score=146.30 Aligned_cols=199 Identities=21% Similarity=0.232 Sum_probs=154.4
Q ss_pred ccCCCceeEEeecCccccCCCcccccCccCcEEEcCCcccCC--ccccCCCCCCcEEEccCCCCcccchhhhccCCCCee
Q 037851 524 FIGTPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDGCELED--IRVIGELKDLEILSLQGSKIEQLPREIGQLTQLKLL 601 (1053)
Q Consensus 524 ~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L 601 (1053)
+.++++++.++++++.++.+|..+. .+|++|++++|.+.. +..+..+++|++|++++|.+..+|.. +.+++|++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L 82 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTL 82 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEE
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEE
Confidence 5678999999999999999998765 789999999999987 46899999999999999999988865 899999999
Q ss_pred eccCcccccccCcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCCeEEEEeccCCCCCCccccccCc
Q 037851 602 DLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLEINILDAGILPSGFFSRKLK 681 (1053)
Q Consensus 602 ~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~L~ 681 (1053)
++++ +.+..+|. .+.++++|++|++++|.+. ......+.++++|+.|+++++....++...+
T Consensus 83 ~Ls~-N~l~~l~~-~~~~l~~L~~L~l~~N~l~-----------~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~----- 144 (290)
T 1p9a_G 83 DLSH-NQLQSLPL-LGQTLPALTVLDVSFNRLT-----------SLPLGALRGLGELQELYLKGNELKTLPPGLL----- 144 (290)
T ss_dssp ECCS-SCCSSCCC-CTTTCTTCCEEECCSSCCC-----------CCCSSTTTTCTTCCEEECTTSCCCCCCTTTT-----
T ss_pred ECCC-CcCCcCch-hhccCCCCCEEECCCCcCc-----------ccCHHHHcCCCCCCEEECCCCCCCccChhhc-----
Confidence 9999 57888864 5789999999999999872 2233567888999999998876655544321
Q ss_pred eEEEEEcccCCCCCcccccceeeeccCCccccccccccCccceeeccccCCcccccccccccccccccEEEeecCCCcee
Q 037851 682 RYRIVVGFQWAPFDKYKTRRTLKLKLNSRICLEEWRGMKNVEYLRLDELPGLTNVLHDLDGEGFAELKHLNVKNNSNFLC 761 (1053)
Q Consensus 682 ~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~ 761 (1053)
..+++|+.|+++++.- +.. +.-....+++|+.|+++++. ++.
T Consensus 145 -----------------------------------~~l~~L~~L~L~~N~l-~~l-~~~~~~~l~~L~~L~L~~N~-l~~ 186 (290)
T 1p9a_G 145 -----------------------------------TPTPKLEKLSLANNNL-TEL-PAGLLNGLENLDTLLLQENS-LYT 186 (290)
T ss_dssp -----------------------------------TTCTTCCEEECTTSCC-SCC-CTTTTTTCTTCCEEECCSSC-CCC
T ss_pred -----------------------------------ccccCCCEEECCCCcC-Ccc-CHHHhcCcCCCCEEECCCCc-CCc
Confidence 1467788888887543 222 22112568999999999986 443
Q ss_pred ecCCcccccCcCCccceeeccccc
Q 037851 762 IVDPLQVRCGAFPMLESLVLQNLI 785 (1053)
Q Consensus 762 i~~~~~~~~~~~p~L~~L~l~~~~ 785 (1053)
++. .....++|+.|.+.+.+
T Consensus 187 ip~----~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 187 IPK----GFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CCT----TTTTTCCCSEEECCSCC
T ss_pred cCh----hhcccccCCeEEeCCCC
Confidence 332 23456789999999743
No 88
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.48 E-value=5.9e-14 Score=147.21 Aligned_cols=195 Identities=16% Similarity=0.239 Sum_probs=133.0
Q ss_pred CceeEEeecCccccCCCc-ccccCccCcEEEcCCcc-cCCc--cccCCCCCCcEEEccC-CCCcccch-hhhccCCCCee
Q 037851 528 PKLKVLDFTRMRLLSLPS-SIHLLTDLRTLCLDGCE-LEDI--RVIGELKDLEILSLQG-SKIEQLPR-EIGQLTQLKLL 601 (1053)
Q Consensus 528 ~~Lr~L~l~~~~~~~lp~-~i~~l~~Lr~L~L~~~~-~~~~--~~i~~l~~L~~L~l~~-~~l~~lp~-~i~~L~~L~~L 601 (1053)
..|+.|++++|.++.+|. .+..+++|++|++++|. ++.+ ..++++++|++|++++ |.++.+|. .+..+++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 378899999999888766 68888999999999997 7763 4688889999999998 88888874 56888999999
Q ss_pred eccCcccccccCcchhcCCccCc---eeecccc-cccccccCCcccccCCChhhhcCCCCCC-eEEEEeccCCCCCCccc
Q 037851 602 DLSNCSKLKVIAPNVLSNLSQLE---ELYMANC-SIEWEHLGPGIERSNASLDELKNLSRLT-SLEINILDAGILPSGFF 676 (1053)
Q Consensus 602 ~l~~~~~l~~~~~~~l~~l~~L~---~L~l~~~-~~~~~~~~~~~~~~~~~~~~L~~l~~L~-~L~i~~~~~~~~~~~~~ 676 (1053)
++++| .+..+|. ++++++|+ +|++++| .+. ......+.++++|+ .|+++.+....++...+
T Consensus 111 ~l~~n-~l~~lp~--~~~l~~L~~L~~L~l~~N~~l~-----------~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~ 176 (239)
T 2xwt_C 111 GIFNT-GLKMFPD--LTKVYSTDIFFILEITDNPYMT-----------SIPVNAFQGLCNETLTLKLYNNGFTSVQGYAF 176 (239)
T ss_dssp EEEEE-CCCSCCC--CTTCCBCCSEEEEEEESCTTCC-----------EECTTTTTTTBSSEEEEECCSCCCCEECTTTT
T ss_pred eCCCC-CCccccc--cccccccccccEEECCCCcchh-----------hcCcccccchhcceeEEEcCCCCCcccCHhhc
Confidence 99884 5777754 77888887 8998888 552 12223466788888 88887665444333221
Q ss_pred cccCceEEEEEcccCCCCCcccccceeeeccCCccccccccccCccceeeccccCCccccccccccccc-ccccEEEeec
Q 037851 677 SRKLKRYRIVVGFQWAPFDKYKTRRTLKLKLNSRICLEEWRGMKNVEYLRLDELPGLTNVLHDLDGEGF-AELKHLNVKN 755 (1053)
Q Consensus 677 ~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~l-~~L~~L~l~~ 755 (1053)
..++|+.|++.++..++...+.. ...+ ++|+.|++++
T Consensus 177 -----------------------------------------~~~~L~~L~L~~n~~l~~i~~~~-~~~l~~~L~~L~l~~ 214 (239)
T 2xwt_C 177 -----------------------------------------NGTKLDAVYLNKNKYLTVIDKDA-FGGVYSGPSLLDVSQ 214 (239)
T ss_dssp -----------------------------------------TTCEEEEEECTTCTTCCEECTTT-TTTCSBCCSEEECTT
T ss_pred -----------------------------------------CCCCCCEEEcCCCCCcccCCHHH-hhccccCCcEEECCC
Confidence 12456666666654333322221 1455 7788888877
Q ss_pred CCCceeecCCcccccCcCCccceeeccccc
Q 037851 756 NSNFLCIVDPLQVRCGAFPMLESLVLQNLI 785 (1053)
Q Consensus 756 ~~~l~~i~~~~~~~~~~~p~L~~L~l~~~~ 785 (1053)
+. ++.++ ...|++|+.|.+.++.
T Consensus 215 N~-l~~l~------~~~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 215 TS-VTALP------SKGLEHLKELIARNTW 237 (239)
T ss_dssp CC-CCCCC------CTTCTTCSEEECTTC-
T ss_pred Cc-cccCC------hhHhccCceeeccCcc
Confidence 64 33222 2257788888877654
No 89
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.48 E-value=2.9e-13 Score=141.95 Aligned_cols=210 Identities=19% Similarity=0.236 Sum_probs=151.0
Q ss_pred CccccCCCcccccCccCcEEEcCCcccCCc--cccCCCCCCcEEEccCCC-Ccccch-hhhccCCCCeeeccCccccccc
Q 037851 537 RMRLLSLPSSIHLLTDLRTLCLDGCELEDI--RVIGELKDLEILSLQGSK-IEQLPR-EIGQLTQLKLLDLSNCSKLKVI 612 (1053)
Q Consensus 537 ~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~~--~~i~~l~~L~~L~l~~~~-l~~lp~-~i~~L~~L~~L~l~~~~~l~~~ 612 (1053)
...++.+|. +. .+|++|++++|.++.+ ..++.+++|++|++++|. +..+|. .+.++++|++|++++|+.+..+
T Consensus 20 c~~l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i 96 (239)
T 2xwt_C 20 CKDIQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI 96 (239)
T ss_dssp ECSCSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEE
T ss_pred ccCccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEc
Confidence 333677787 44 3899999999999883 478999999999999997 998876 6789999999999987789999
Q ss_pred CcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCC---eEEEEec-cCCCCCCccccccCceEEEEEc
Q 037851 613 APNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLT---SLEINIL-DAGILPSGFFSRKLKRYRIVVG 688 (1053)
Q Consensus 613 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~---~L~i~~~-~~~~~~~~~~~~~L~~l~l~~~ 688 (1053)
++..+.++++|++|++++|.+. . +..+..+++|+ .|+++.+ ....++...
T Consensus 97 ~~~~f~~l~~L~~L~l~~n~l~------------~-lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~------------- 150 (239)
T 2xwt_C 97 DPDALKELPLLKFLGIFNTGLK------------M-FPDLTKVYSTDIFFILEITDNPYMTSIPVNA------------- 150 (239)
T ss_dssp CTTSEECCTTCCEEEEEEECCC------------S-CCCCTTCCBCCSEEEEEEESCTTCCEECTTT-------------
T ss_pred CHHHhCCCCCCCEEeCCCCCCc------------c-ccccccccccccccEEECCCCcchhhcCccc-------------
Confidence 8888899999999999999762 1 22255666666 8888776 443332211
Q ss_pred ccCCCCCcccccceeeeccCCccccccccccCccc-eeeccccCCcccccccccccccccccEEEeecCCCceeecCCcc
Q 037851 689 FQWAPFDKYKTRRTLKLKLNSRICLEEWRGMKNVE-YLRLDELPGLTNVLHDLDGEGFAELKHLNVKNNSNFLCIVDPLQ 767 (1053)
Q Consensus 689 ~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~L~-~L~L~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~i~~~~~ 767 (1053)
+..+++|+ .|+++++.- +...+... .. ++|+.|++++|..+..+....
T Consensus 151 ---------------------------~~~l~~L~~~L~l~~n~l-~~i~~~~~-~~-~~L~~L~L~~n~~l~~i~~~~- 199 (239)
T 2xwt_C 151 ---------------------------FQGLCNETLTLKLYNNGF-TSVQGYAF-NG-TKLDAVYLNKNKYLTVIDKDA- 199 (239)
T ss_dssp ---------------------------TTTTBSSEEEEECCSCCC-CEECTTTT-TT-CEEEEEECTTCTTCCEECTTT-
T ss_pred ---------------------------ccchhcceeEEEcCCCCC-cccCHhhc-CC-CCCCEEEcCCCCCcccCCHHH-
Confidence 11567778 888877543 22222221 22 789999999986566553321
Q ss_pred cccCcC-CccceeecccccccccccccccCccccCCccEEeEccCCCc
Q 037851 768 VRCGAF-PMLESLVLQNLINLERICHGQLRAESFCNLKTIKVGSCHKL 814 (1053)
Q Consensus 768 ~~~~~~-p~L~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L~i~~c~~l 814 (1053)
...+ ++|+.|++++ +.++.+ +...|++|+.|++.++..+
T Consensus 200 --~~~l~~~L~~L~l~~-N~l~~l-----~~~~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 200 --FGGVYSGPSLLDVSQ-TSVTAL-----PSKGLEHLKELIARNTWTL 239 (239)
T ss_dssp --TTTCSBCCSEEECTT-CCCCCC-----CCTTCTTCSEEECTTC---
T ss_pred --hhccccCCcEEECCC-CccccC-----ChhHhccCceeeccCccCC
Confidence 3456 8999999998 456554 3347899999999987643
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.47 E-value=1.9e-14 Score=159.84 Aligned_cols=104 Identities=20% Similarity=0.293 Sum_probs=61.7
Q ss_pred CceeEEeecCccccCCCcccccCccCcEEEcCCcccCC---ccccCCCCCCcEEEccCCCCc-ccchhhhccCCCCeeec
Q 037851 528 PKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDGCELED---IRVIGELKDLEILSLQGSKIE-QLPREIGQLTQLKLLDL 603 (1053)
Q Consensus 528 ~~Lr~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~---~~~i~~l~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~l 603 (1053)
+.++.|+++++.+...+..+..+.+|++|++++|.+.. +..+..+++|++|++++|.+. ..|..++++++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 56666666666666555555566666666666666543 244566666666666666655 45556666666666666
Q ss_pred cCccccccc-CcchhcCCccCceeecccc
Q 037851 604 SNCSKLKVI-APNVLSNLSQLEELYMANC 631 (1053)
Q Consensus 604 ~~~~~l~~~-~~~~l~~l~~L~~L~l~~~ 631 (1053)
++|..+... .+..+.++++|++|++++|
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 178 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWC 178 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCC
Confidence 665444421 1233555666666666665
No 91
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.46 E-value=2.9e-13 Score=144.92 Aligned_cols=130 Identities=18% Similarity=0.326 Sum_probs=104.3
Q ss_pred ceeEEeecCccccCCCcccccCccCcEEEcCCcccCCccccCCCCCCcEEEccCCCCcccchhhhccCCCCeeeccCccc
Q 037851 529 KLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDGCELEDIRVIGELKDLEILSLQGSKIEQLPREIGQLTQLKLLDLSNCSK 608 (1053)
Q Consensus 529 ~Lr~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~ 608 (1053)
.+..+++.++.+..+. ....+.+|+.|++++|.+..++.++.+++|++|++++|.+..+| .++++++|++|++++| .
T Consensus 20 ~l~~l~l~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n-~ 96 (272)
T 3rfs_A 20 ETIKANLKKKSVTDAV-TQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGN-Q 96 (272)
T ss_dssp HHHHHHHTCSCTTSEE-CHHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTS-C
T ss_pred HHHHHHhcCccccccc-ccccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCC-c
Confidence 4445566666555443 35788999999999999999888999999999999999999876 7899999999999994 7
Q ss_pred ccccCcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCCeEEEEeccCCCCC
Q 037851 609 LKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLEINILDAGILP 672 (1053)
Q Consensus 609 l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~ 672 (1053)
+..+++..++++++|++|++++|.+. ......++.+++|+.|+++.+....++
T Consensus 97 l~~~~~~~~~~l~~L~~L~L~~n~l~-----------~~~~~~~~~l~~L~~L~L~~n~l~~~~ 149 (272)
T 3rfs_A 97 LQSLPNGVFDKLTNLKELVLVENQLQ-----------SLPDGVFDKLTNLTYLNLAHNQLQSLP 149 (272)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCC-----------CCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred cCccChhHhcCCcCCCEEECCCCcCC-----------ccCHHHhccCCCCCEEECCCCccCccC
Confidence 88888887899999999999999872 223344678888888888877654443
No 92
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.46 E-value=7.3e-13 Score=147.49 Aligned_cols=241 Identities=17% Similarity=0.164 Sum_probs=149.6
Q ss_pred eEEeecCccccCCCcccccCccCcEEEcCCcccCCc--cccCCCCCCcEEEccCCCCc-ccch-hhhccCCCCeeeccCc
Q 037851 531 KVLDFTRMRLLSLPSSIHLLTDLRTLCLDGCELEDI--RVIGELKDLEILSLQGSKIE-QLPR-EIGQLTQLKLLDLSNC 606 (1053)
Q Consensus 531 r~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~~--~~i~~l~~L~~L~l~~~~l~-~lp~-~i~~L~~L~~L~l~~~ 606 (1053)
++++.+++.++++|..+ ..++++|+|++|.++.+ ..|.++++|++|+|++|.+. .+|. .+.++++|+++...++
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 45667777777777765 35788888888887773 35778888888888888764 4654 3577777777655555
Q ss_pred ccccccCcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCCeEEEEec-cCCCCCCccccccCceEEE
Q 037851 607 SKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLEINIL-DAGILPSGFFSRKLKRYRI 685 (1053)
Q Consensus 607 ~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~-~~~~~~~~~~~~~L~~l~l 685 (1053)
+.+..+++..+.++++|++|++++|.+... .........++..|.+... ....++...
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~-----------~~~~~~~~~~l~~l~l~~~~~i~~l~~~~---------- 148 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHL-----------PDVHKIHSLQKVLLDIQDNINIHTIERNS---------- 148 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSC-----------CCCTTCCBSSCEEEEEESCTTCCEECTTS----------
T ss_pred CcccccCchhhhhccccccccccccccccC-----------Cchhhcccchhhhhhhccccccccccccc----------
Confidence 678888777778888888888887765210 1111112223444444322 111111110
Q ss_pred EEcccCCCCCcccccceeeeccCCcccccccc-ccCccceeeccccCCcccccccccccccccccEEEeecCCCceeecC
Q 037851 686 VVGFQWAPFDKYKTRRTLKLKLNSRICLEEWR-GMKNVEYLRLDELPGLTNVLHDLDGEGFAELKHLNVKNNSNFLCIVD 764 (1053)
Q Consensus 686 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~-~l~~L~~L~L~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~i~~ 764 (1053)
+. ....++.|+++++. ++...+.. ...++|+.|.+.++..++.+..
T Consensus 149 ------------------------------f~~~~~~l~~L~L~~N~-i~~i~~~~--f~~~~L~~l~l~~~n~l~~i~~ 195 (350)
T 4ay9_X 149 ------------------------------FVGLSFESVILWLNKNG-IQEIHNSA--FNGTQLDELNLSDNNNLEELPN 195 (350)
T ss_dssp ------------------------------STTSBSSCEEEECCSSC-CCEECTTS--STTEEEEEEECTTCTTCCCCCT
T ss_pred ------------------------------hhhcchhhhhhcccccc-ccCCChhh--ccccchhHHhhccCCcccCCCH
Confidence 00 12245556665532 22222221 2345677888877666655543
Q ss_pred CcccccCcCCccceeecccccccccccccccCccccCCccEEeEccCCCccccCCchhhhccCCccEEEecccch
Q 037851 765 PLQVRCGAFPMLESLVLQNLINLERICHGQLRAESFCNLKTIKVGSCHKLKNLFSFSIAKFLPQLKTIEVTECKI 839 (1053)
Q Consensus 765 ~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~ 839 (1053)
.. ...+++|+.|++++. +++.+ +.+.+.+|++|.+.++.+++.+|+ +..+++|+.+++.+...
T Consensus 196 ~~---f~~l~~L~~LdLs~N-~l~~l-----p~~~~~~L~~L~~l~~~~l~~lP~---l~~l~~L~~l~l~~~~~ 258 (350)
T 4ay9_X 196 DV---FHGASGPVILDISRT-RIHSL-----PSYGLENLKKLRARSTYNLKKLPT---LEKLVALMEASLTYPSH 258 (350)
T ss_dssp TT---TTTEECCSEEECTTS-CCCCC-----CSSSCTTCCEEECTTCTTCCCCCC---TTTCCSCCEEECSCHHH
T ss_pred HH---hccCcccchhhcCCC-CcCcc-----ChhhhccchHhhhccCCCcCcCCC---chhCcChhhCcCCCCcc
Confidence 21 346778888888874 56654 335578899999999998998876 67889999999876433
No 93
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.46 E-value=2.1e-14 Score=159.43 Aligned_cols=223 Identities=20% Similarity=0.171 Sum_probs=138.9
Q ss_pred eeEEeecCccccCCCcccccC--ccCcEEEcCCcccCC-ccccCCCCCCcEEEccCCCCcc--cchhhhccCCCCeeecc
Q 037851 530 LKVLDFTRMRLLSLPSSIHLL--TDLRTLCLDGCELED-IRVIGELKDLEILSLQGSKIEQ--LPREIGQLTQLKLLDLS 604 (1053)
Q Consensus 530 Lr~L~l~~~~~~~lp~~i~~l--~~Lr~L~L~~~~~~~-~~~i~~l~~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~l~ 604 (1053)
++.++++++.+. |..+..+ .++++|++++|.+.. +..+..+++|++|++++|.+.. +|..+.++++|++|+++
T Consensus 49 ~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~ 126 (336)
T 2ast_B 49 WQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE 126 (336)
T ss_dssp SSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred heeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCc
Confidence 456666666554 4455666 788888888888776 4667788888888888888762 77778888888888888
Q ss_pred CcccccccCcchhcCCccCceeecccc-cccccccCCcccccCCChhhhcCCCCCCeEEEEec-cCCCCCCccccccCce
Q 037851 605 NCSKLKVIAPNVLSNLSQLEELYMANC-SIEWEHLGPGIERSNASLDELKNLSRLTSLEINIL-DAGILPSGFFSRKLKR 682 (1053)
Q Consensus 605 ~~~~l~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~-~~~~~~~~~~~~~L~~ 682 (1053)
+| .+....+..++++++|++|++++| .+. .......+.++++|+.|+++++ .....
T Consensus 127 ~~-~l~~~~~~~l~~~~~L~~L~L~~~~~l~----------~~~l~~~~~~~~~L~~L~l~~~~~l~~~----------- 184 (336)
T 2ast_B 127 GL-RLSDPIVNTLAKNSNLVRLNLSGCSGFS----------EFALQTLLSSCSRLDELNLSWCFDFTEK----------- 184 (336)
T ss_dssp TC-BCCHHHHHHHTTCTTCSEEECTTCBSCC----------HHHHHHHHHHCTTCCEEECCCCTTCCHH-----------
T ss_pred Cc-ccCHHHHHHHhcCCCCCEEECCCCCCCC----------HHHHHHHHhcCCCCCEEcCCCCCCcChH-----------
Confidence 86 455444556788888888888887 331 0112334677888888888776 32210
Q ss_pred EEEEEcccCCCCCcccccceeeeccCCcccccccc-ccC-ccceeeccccC-Ccc-cccccccccccccccEEEeecCCC
Q 037851 683 YRIVVGFQWAPFDKYKTRRTLKLKLNSRICLEEWR-GMK-NVEYLRLDELP-GLT-NVLHDLDGEGFAELKHLNVKNNSN 758 (1053)
Q Consensus 683 l~l~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~-~l~-~L~~L~L~~~~-~~~-~~~~~l~~~~l~~L~~L~l~~~~~ 758 (1053)
.++... .++ +|++|+++++. ..+ ..++.. ...+++|+.|++++|..
T Consensus 185 -----------------------------~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~-~~~~~~L~~L~l~~~~~ 234 (336)
T 2ast_B 185 -----------------------------HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL-VRRCPNLVHLDLSDSVM 234 (336)
T ss_dssp -----------------------------HHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHH-HHHCTTCSEEECTTCTT
T ss_pred -----------------------------HHHHHHHhcccCCCEEEeCCCcccCCHHHHHHH-HhhCCCCCEEeCCCCCc
Confidence 001111 455 67777777663 222 111111 14567777777777753
Q ss_pred ceeecCCcccccCcCCccceeecccccccccccccccCccccCCccEEeEccC
Q 037851 759 FLCIVDPLQVRCGAFPMLESLVLQNLINLERICHGQLRAESFCNLKTIKVGSC 811 (1053)
Q Consensus 759 l~~i~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L~i~~c 811 (1053)
+.. ........+++|+.|+++++..+... +......+++|+.|++.+|
T Consensus 235 l~~---~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 235 LKN---DCFQEFFQLNYLQHLSLSRCYDIIPE--TLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CCG---GGGGGGGGCTTCCEEECTTCTTCCGG--GGGGGGGCTTCCEEECTTS
T ss_pred CCH---HHHHHHhCCCCCCEeeCCCCCCCCHH--HHHHHhcCCCCCEEeccCc
Confidence 221 11122345677788887776533221 1112345788888888887
No 94
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.46 E-value=2.6e-13 Score=148.46 Aligned_cols=195 Identities=16% Similarity=0.208 Sum_probs=106.1
Q ss_pred cceEEeeccCCCCCCCCCcccc-cCCCceeEEeecCccccCCCcccccC-----ccCcEEEcCCcccCC--ccccCCCCC
Q 037851 503 CSRISLYDNNINSPLKIPDNIF-IGTPKLKVLDFTRMRLLSLPSSIHLL-----TDLRTLCLDGCELED--IRVIGELKD 574 (1053)
Q Consensus 503 ~~~l~l~~~~~~~~~~~~~~~~-~~~~~Lr~L~l~~~~~~~lp~~i~~l-----~~Lr~L~L~~~~~~~--~~~i~~l~~ 574 (1053)
.+.+.+..+...+. +|..+| ..+++|++|++++|.+..+|..+..+ ++|++|++++|.+.. +..++.+++
T Consensus 97 L~~L~L~~n~l~~~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~ 174 (312)
T 1wwl_A 97 LQELTLENLEVTGT--APPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPA 174 (312)
T ss_dssp CCEEEEEEEBCBSC--CCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSS
T ss_pred ccEEEccCCcccch--hHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCC
Confidence 45555555544321 344432 55666666666666666555555555 566666666666555 245666666
Q ss_pred CcEEEccCCCCcc---cchhh--hccCCCCeeeccCcccccc---cCcchhcCCccCceeecccccccccccCCcccccC
Q 037851 575 LEILSLQGSKIEQ---LPREI--GQLTQLKLLDLSNCSKLKV---IAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSN 646 (1053)
Q Consensus 575 L~~L~l~~~~l~~---lp~~i--~~L~~L~~L~l~~~~~l~~---~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 646 (1053)
|++|++++|.+.. +|..+ +++++|++|++++| .+.. ++...+.++++|++|++++|.+.. .
T Consensus 175 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~----------~ 243 (312)
T 1wwl_A 175 LSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHNSLRD----------A 243 (312)
T ss_dssp CCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTSCCCS----------S
T ss_pred CCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCCcCCc----------c
Confidence 6666666665432 34344 56666666666663 3442 222333455666666666665421 0
Q ss_pred CChhhhcCCCCCCeEEEEeccCCCCCCccccccCceEEEEEcccCCCCCcccccceeeeccCCccccccccccCccceee
Q 037851 647 ASLDELKNLSRLTSLEINILDAGILPSGFFSRKLKRYRIVVGFQWAPFDKYKTRRTLKLKLNSRICLEEWRGMKNVEYLR 726 (1053)
Q Consensus 647 ~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~L~~L~ 726 (1053)
.....+..+++|+.|+++.+....+|. +.. ++|++|+
T Consensus 244 ~~~~~~~~l~~L~~L~Ls~N~l~~ip~------------------------------------------~~~-~~L~~L~ 280 (312)
T 1wwl_A 244 AGAPSCDWPSQLNSLNLSFTGLKQVPK------------------------------------------GLP-AKLSVLD 280 (312)
T ss_dssp CCCSCCCCCTTCCEEECTTSCCSSCCS------------------------------------------SCC-SEEEEEE
T ss_pred cchhhhhhcCCCCEEECCCCccChhhh------------------------------------------hcc-CCceEEE
Confidence 011233345556666655554443333 223 6777777
Q ss_pred ccccCCcccccccccccccccccEEEeecCC
Q 037851 727 LDELPGLTNVLHDLDGEGFAELKHLNVKNNS 757 (1053)
Q Consensus 727 L~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~ 757 (1053)
++++.- +.. +.+ ..+++|+.|++++++
T Consensus 281 Ls~N~l-~~~-p~~--~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 281 LSYNRL-DRN-PSP--DELPQVGNLSLKGNP 307 (312)
T ss_dssp CCSSCC-CSC-CCT--TTSCEEEEEECTTCT
T ss_pred CCCCCC-CCC-hhH--hhCCCCCEEeccCCC
Confidence 777533 222 333 578888899888876
No 95
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.44 E-value=1.1e-12 Score=138.45 Aligned_cols=105 Identities=30% Similarity=0.422 Sum_probs=55.8
Q ss_pred CceeEEeecCccccCCCc-ccccCccCcEEEcCCcccCC--ccccCCCCCCcEEEccCCCCcccch-hhhccCCCCeeec
Q 037851 528 PKLKVLDFTRMRLLSLPS-SIHLLTDLRTLCLDGCELED--IRVIGELKDLEILSLQGSKIEQLPR-EIGQLTQLKLLDL 603 (1053)
Q Consensus 528 ~~Lr~L~l~~~~~~~lp~-~i~~l~~Lr~L~L~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l 603 (1053)
+.++.|++++|.+..++. .+.++++|++|++++|.+.. +..+..+++|++|++++|.+..+|. .+..+++|++|++
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 114 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence 345555555555554432 45555555555555555554 2335555555555555555555543 2355555555555
Q ss_pred cCcccccccCcchhcCCccCceeecccccc
Q 037851 604 SNCSKLKVIAPNVLSNLSQLEELYMANCSI 633 (1053)
Q Consensus 604 ~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 633 (1053)
++ +.+..+++..+.++++|++|++++|.+
T Consensus 115 ~~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l 143 (251)
T 3m19_A 115 GG-NQLKSLPSGVFDRLTKLKELRLNTNQL 143 (251)
T ss_dssp CS-SCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CC-CcCCCcChhHhccCCcccEEECcCCcC
Confidence 55 345555554445555555555555544
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.44 E-value=1.7e-12 Score=144.59 Aligned_cols=250 Identities=16% Similarity=0.129 Sum_probs=167.4
Q ss_pred CcccccCccCcEEEcCCcccCC-ccccCCCCCCcEEEccCCCCcccchh-hhccCCCCeeeccCcccccccCcchhcCCc
Q 037851 544 PSSIHLLTDLRTLCLDGCELED-IRVIGELKDLEILSLQGSKIEQLPRE-IGQLTQLKLLDLSNCSKLKVIAPNVLSNLS 621 (1053)
Q Consensus 544 p~~i~~l~~Lr~L~L~~~~~~~-~~~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~~~~~l~~l~ 621 (1053)
|+.++.+.. ++++.++++++. |..+ ..++++|+|++|.|+.+|.. +.+|++|++|+|++|.-...+++..+.+++
T Consensus 3 p~~~C~C~~-~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~ 79 (350)
T 4ay9_X 3 HHRICHCSN-RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLP 79 (350)
T ss_dssp CCSSSEEET-TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCT
T ss_pred CCCccEeeC-CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcch
Confidence 333455543 678888888887 5555 46899999999999999974 799999999999996555778777788999
Q ss_pred cCceee-cccccccccccCCcccccCCChhhhcCCCCCCeEEEEeccCCCCCCccccccCceEEEEEcccCCCCCccccc
Q 037851 622 QLEELY-MANCSIEWEHLGPGIERSNASLDELKNLSRLTSLEINILDAGILPSGFFSRKLKRYRIVVGFQWAPFDKYKTR 700 (1053)
Q Consensus 622 ~L~~L~-l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l 700 (1053)
+|+++. +..|.+. ......+..+++|+.|+++.+....++...+.
T Consensus 80 ~l~~~l~~~~N~l~-----------~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~----------------------- 125 (350)
T 4ay9_X 80 KLHEIRIEKANNLL-----------YINPEAFQNLPNLQYLLISNTGIKHLPDVHKI----------------------- 125 (350)
T ss_dssp TCCEEEEEEETTCC-----------EECTTSBCCCTTCCEEEEEEECCSSCCCCTTC-----------------------
T ss_pred hhhhhhcccCCccc-----------ccCchhhhhccccccccccccccccCCchhhc-----------------------
Confidence 987654 4455551 22345678899999999999877665543211
Q ss_pred ceeeeccCCccccccccccCccceeeccccCCcccccccccccccccccEEEeecCCCceeecCCcccccCcCCccceee
Q 037851 701 RTLKLKLNSRICLEEWRGMKNVEYLRLDELPGLTNVLHDLDGEGFAELKHLNVKNNSNFLCIVDPLQVRCGAFPMLESLV 780 (1053)
Q Consensus 701 ~~l~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~p~L~~L~ 780 (1053)
...++..|++.++..+..............++.|+++++. ++.+... ....++|+.|.
T Consensus 126 -----------------~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~-i~~i~~~----~f~~~~L~~l~ 183 (350)
T 4ay9_X 126 -----------------HSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-IQEIHNS----AFNGTQLDELN 183 (350)
T ss_dssp -----------------CBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC-CCEECTT----SSTTEEEEEEE
T ss_pred -----------------ccchhhhhhhccccccccccccchhhcchhhhhhcccccc-ccCCChh----hccccchhHHh
Confidence 1223334444443333322221111223467888888875 4444322 22346788888
Q ss_pred cccccccccccccccCccccCCccEEeEccCCCccccCCchhhhccCCccEEEecccchhhhHhhcCccccccccccccc
Q 037851 781 LQNLINLERICHGQLRAESFCNLKTIKVGSCHKLKNLFSFSIAKFLPQLKTIEVTECKIVEEIFVSSNEEAIGEIALAQV 860 (1053)
Q Consensus 781 l~~~~~L~~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~L 860 (1053)
+.+++.++.++...+ ..+++|+.|+++++ +++.+|+ ..+.+|+.|.+.+|..+..++.. ..+++|
T Consensus 184 l~~~n~l~~i~~~~f--~~l~~L~~LdLs~N-~l~~lp~----~~~~~L~~L~~l~~~~l~~lP~l--------~~l~~L 248 (350)
T 4ay9_X 184 LSDNNNLEELPNDVF--HGASGPVILDISRT-RIHSLPS----YGLENLKKLRARSTYNLKKLPTL--------EKLVAL 248 (350)
T ss_dssp CTTCTTCCCCCTTTT--TTEECCSEEECTTS-CCCCCCS----SSCTTCCEEECTTCTTCCCCCCT--------TTCCSC
T ss_pred hccCCcccCCCHHHh--ccCcccchhhcCCC-CcCccCh----hhhccchHhhhccCCCcCcCCCc--------hhCcCh
Confidence 888788887754433 46788999999887 5888765 34678888888888777766531 237778
Q ss_pred ceEecCC
Q 037851 861 RSLILRT 867 (1053)
Q Consensus 861 ~~L~l~~ 867 (1053)
+.+++.+
T Consensus 249 ~~l~l~~ 255 (350)
T 4ay9_X 249 MEASLTY 255 (350)
T ss_dssp CEEECSC
T ss_pred hhCcCCC
Confidence 8877754
No 97
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.41 E-value=1.3e-12 Score=138.01 Aligned_cols=152 Identities=24% Similarity=0.410 Sum_probs=129.6
Q ss_pred CcceEEeeccCCCCCCCCCcccccCCCceeEEeecCccccCCCc-ccccCccCcEEEcCCcccCC--ccccCCCCCCcEE
Q 037851 502 KCSRISLYDNNINSPLKIPDNIFIGTPKLKVLDFTRMRLLSLPS-SIHLLTDLRTLCLDGCELED--IRVIGELKDLEIL 578 (1053)
Q Consensus 502 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~-~i~~l~~Lr~L~L~~~~~~~--~~~i~~l~~L~~L 578 (1053)
..+.+.+..+.... ++...|.++++|++|++++|.+..++. .+..+++|++|++++|.+.. +..++.+++|++|
T Consensus 36 ~l~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 112 (251)
T 3m19_A 36 DTEKLDLQSTGLAT---LSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKL 112 (251)
T ss_dssp TCCEEECTTSCCCC---CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCEEEccCCCcCc---cCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEE
Confidence 46788887776654 566668899999999999999997755 58999999999999999988 3578999999999
Q ss_pred EccCCCCcccchh-hhccCCCCeeeccCcccccccCcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCC
Q 037851 579 SLQGSKIEQLPRE-IGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSR 657 (1053)
Q Consensus 579 ~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~ 657 (1053)
++++|.+..+|.. +..+++|++|++++ +.+..+++..++++++|++|++++|.+. ......+..+++
T Consensus 113 ~L~~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~-----------~~~~~~~~~l~~ 180 (251)
T 3m19_A 113 YLGGNQLKSLPSGVFDRLTKLKELRLNT-NQLQSIPAGAFDKLTNLQTLSLSTNQLQ-----------SVPHGAFDRLGK 180 (251)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCS-----------CCCTTTTTTCTT
T ss_pred EcCCCcCCCcChhHhccCCcccEEECcC-CcCCccCHHHcCcCcCCCEEECCCCcCC-----------ccCHHHHhCCCC
Confidence 9999999999876 58999999999999 5788998878999999999999999872 233346778899
Q ss_pred CCeEEEEeccC
Q 037851 658 LTSLEINILDA 668 (1053)
Q Consensus 658 L~~L~i~~~~~ 668 (1053)
|+.|+++++..
T Consensus 181 L~~L~l~~N~~ 191 (251)
T 3m19_A 181 LQTITLFGNQF 191 (251)
T ss_dssp CCEEECCSCCB
T ss_pred CCEEEeeCCce
Confidence 99999988764
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.39 E-value=1.3e-12 Score=141.00 Aligned_cols=127 Identities=28% Similarity=0.407 Sum_probs=90.8
Q ss_pred cCCCceeEEeecCccccCCCcccccCccCcEEEcCCcccCCccccCCCCCCcEEEccCCCCcccchhhhccCCCCeeecc
Q 037851 525 IGTPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDGCELEDIRVIGELKDLEILSLQGSKIEQLPREIGQLTQLKLLDLS 604 (1053)
Q Consensus 525 ~~~~~Lr~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~ 604 (1053)
..+++|+.|++++|.+..+|. +..+++|++|++++|.+.....++.+++|++|++++|.+..+|. +..+++|++|+++
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~ 120 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLE 120 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECT
T ss_pred hhcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCChh-hccCCCCCEEECC
Confidence 356677788888887777754 77778888888888877775447788888888888887777664 7778888888887
Q ss_pred CcccccccCcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCCeEEEEeccCC
Q 037851 605 NCSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLEINILDAG 669 (1053)
Q Consensus 605 ~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~ 669 (1053)
+| .+..++ .+.++++|++|++++|.+. .+..+..+++|+.|+++.+...
T Consensus 121 ~n-~i~~~~--~l~~l~~L~~L~l~~n~l~-------------~~~~l~~l~~L~~L~L~~N~l~ 169 (291)
T 1h6t_A 121 HN-GISDIN--GLVHLPQLESLYLGNNKIT-------------DITVLSRLTKLDTLSLEDNQIS 169 (291)
T ss_dssp TS-CCCCCG--GGGGCTTCCEEECCSSCCC-------------CCGGGGGCTTCSEEECCSSCCC
T ss_pred CC-cCCCCh--hhcCCCCCCEEEccCCcCC-------------cchhhccCCCCCEEEccCCccc
Confidence 74 566552 3677788888888777652 1245667777777777766543
No 99
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.38 E-value=1.4e-12 Score=131.97 Aligned_cols=144 Identities=19% Similarity=0.262 Sum_probs=91.8
Q ss_pred cceEEeeccCCCCCCCCCcccccCCCceeEEeecCccccCCCcccccCccCcEEEcCCcccCC--ccccCCCCCCcEEEc
Q 037851 503 CSRISLYDNNINSPLKIPDNIFIGTPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDGCELED--IRVIGELKDLEILSL 580 (1053)
Q Consensus 503 ~~~l~l~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~--~~~i~~l~~L~~L~l 580 (1053)
.+.+.+..+.... +| .+..+++|++|++++|.+..++ .+..+++|++|++++|.+.. +..++.+++|++|++
T Consensus 46 L~~L~l~~n~i~~---l~--~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 46 LTYITLANINVTD---LT--GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp CCEEEEESSCCSC---CT--TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred ccEEeccCCCccC---hH--HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 4566666555442 34 1456677777777777655544 46677777777777777665 566777777777777
Q ss_pred cCCCCc-ccchhhhccCCCCeeeccCcccccccCcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCC
Q 037851 581 QGSKIE-QLPREIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLT 659 (1053)
Q Consensus 581 ~~~~l~-~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~ 659 (1053)
++|.+. ..|..++++++|++|++++|..+..++ .+.++++|++|++++|.+. .+..+..+++|+
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i~-------------~~~~l~~l~~L~ 184 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVH-------------DYRGIEDFPKLN 184 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTBCCC-------------CCTTGGGCSSCC
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCCCCc-------------ChHHhccCCCCC
Confidence 777766 356667777777777777754355554 2667777777777776651 122556667777
Q ss_pred eEEEEecc
Q 037851 660 SLEINILD 667 (1053)
Q Consensus 660 ~L~i~~~~ 667 (1053)
.|+++++.
T Consensus 185 ~L~l~~N~ 192 (197)
T 4ezg_A 185 QLYAFSQT 192 (197)
T ss_dssp EEEECBC-
T ss_pred EEEeeCcc
Confidence 77776654
No 100
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.38 E-value=1.6e-12 Score=127.83 Aligned_cols=136 Identities=24% Similarity=0.257 Sum_probs=115.3
Q ss_pred CCceeEEeecCcccc--CCCcccccCccCcEEEcCCcccCCccccCCCCCCcEEEccCCCCcc-cchhhhccCCCCeeec
Q 037851 527 TPKLKVLDFTRMRLL--SLPSSIHLLTDLRTLCLDGCELEDIRVIGELKDLEILSLQGSKIEQ-LPREIGQLTQLKLLDL 603 (1053)
Q Consensus 527 ~~~Lr~L~l~~~~~~--~lp~~i~~l~~Lr~L~L~~~~~~~~~~i~~l~~L~~L~l~~~~l~~-lp~~i~~L~~L~~L~l 603 (1053)
.+.|+.|++++|.+. .+|..+..+++|++|++++|.+..+..++.+++|++|++++|.+.. +|..+.++++|++|++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 478999999999998 8999889999999999999998888889999999999999999987 7887888999999999
Q ss_pred cCcccccccCc-chhcCCccCceeecccccccccccCCcccccCCCh---hhhcCCCCCCeEEEEeccCCCCCCc
Q 037851 604 SNCSKLKVIAP-NVLSNLSQLEELYMANCSIEWEHLGPGIERSNASL---DELKNLSRLTSLEINILDAGILPSG 674 (1053)
Q Consensus 604 ~~~~~l~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~---~~L~~l~~L~~L~i~~~~~~~~~~~ 674 (1053)
++| .+..++. ..+.++++|++|++++|.+. .... ..+..+++|+.|++..+.....|..
T Consensus 103 s~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~-----------~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 103 SGN-KLKDISTLEPLKKLECLKSLDLFNCEVT-----------NLNDYRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp BSS-SCCSSGGGGGGSSCSCCCEEECCSSGGG-----------TSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred cCC-ccCcchhHHHHhcCCCCCEEEeeCCcCc-----------chHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence 995 6777653 56889999999999999872 1111 3678899999999998877666543
No 101
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.36 E-value=4.3e-12 Score=128.32 Aligned_cols=147 Identities=19% Similarity=0.246 Sum_probs=125.2
Q ss_pred cCCCceeEEeecCccccCCCcccccCccCcEEEcCCcccCCccccCCCCCCcEEEccCCCCcc-cchhhhccCCCCeeec
Q 037851 525 IGTPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDGCELEDIRVIGELKDLEILSLQGSKIEQ-LPREIGQLTQLKLLDL 603 (1053)
Q Consensus 525 ~~~~~Lr~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~~~~i~~l~~L~~L~l~~~~l~~-lp~~i~~L~~L~~L~l 603 (1053)
..+++|+.|++++|.+..+| .+..+++|++|++++|.+..++.++.+++|++|++++|.+.. .|..++.+++|++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 46788999999999999998 699999999999999998888899999999999999999984 7888999999999999
Q ss_pred cCcccccccCcchhcCCccCceeeccccc-ccccccCCcccccCCChhhhcCCCCCCeEEEEeccCCCCCCccccccCce
Q 037851 604 SNCSKLKVIAPNVLSNLSQLEELYMANCS-IEWEHLGPGIERSNASLDELKNLSRLTSLEINILDAGILPSGFFSRKLKR 682 (1053)
Q Consensus 604 ~~~~~l~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~L~~ 682 (1053)
++| .+....+..++++++|++|++++|. + ..+..+..+++|+.|+++++....++......+|+.
T Consensus 120 s~n-~i~~~~~~~l~~l~~L~~L~L~~n~~i-------------~~~~~l~~l~~L~~L~l~~n~i~~~~~l~~l~~L~~ 185 (197)
T 4ezg_A 120 SHS-AHDDSILTKINTLPKVNSIDLSYNGAI-------------TDIMPLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQ 185 (197)
T ss_dssp CSS-BCBGGGHHHHTTCSSCCEEECCSCTBC-------------CCCGGGGGCSSCCEEECTTBCCCCCTTGGGCSSCCE
T ss_pred cCC-ccCcHhHHHHhhCCCCCEEEccCCCCc-------------cccHhhcCCCCCCEEECCCCCCcChHHhccCCCCCE
Confidence 995 6666446668999999999999997 4 123468889999999999988777764333477888
Q ss_pred EEEE
Q 037851 683 YRIV 686 (1053)
Q Consensus 683 l~l~ 686 (1053)
|.+.
T Consensus 186 L~l~ 189 (197)
T 4ezg_A 186 LYAF 189 (197)
T ss_dssp EEEC
T ss_pred EEee
Confidence 8774
No 102
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.35 E-value=3.8e-12 Score=131.03 Aligned_cols=135 Identities=19% Similarity=0.356 Sum_probs=111.2
Q ss_pred CCCcccccCCCceeEEeecCccccCCCc-ccccCccCcEEEcCCcccCC--ccccCCCCCCcEEEccCCCCcccchh-hh
Q 037851 518 KIPDNIFIGTPKLKVLDFTRMRLLSLPS-SIHLLTDLRTLCLDGCELED--IRVIGELKDLEILSLQGSKIEQLPRE-IG 593 (1053)
Q Consensus 518 ~~~~~~~~~~~~Lr~L~l~~~~~~~lp~-~i~~l~~Lr~L~L~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~lp~~-i~ 593 (1053)
.+|..+. +.|+.|++++|.+..+|. .+..+++|++|+|++|.+.. +..+..+++|++|+|++|.+..+|.. +.
T Consensus 25 ~iP~~l~---~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~ 101 (220)
T 2v9t_B 25 EIPTNLP---ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFE 101 (220)
T ss_dssp SCCSSCC---TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTT
T ss_pred cCCCccC---cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHcc
Confidence 3666542 678999999999988765 68899999999999999877 47899999999999999999998876 47
Q ss_pred ccCCCCeeeccCcccccccCcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCCeEEEEecc
Q 037851 594 QLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLEINILD 667 (1053)
Q Consensus 594 ~L~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~ 667 (1053)
.+++|++|++++ +.+..+++..+.++++|++|++++|.+. ......+..+++|+.|+++++.
T Consensus 102 ~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~-----------~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 102 GLFSLQLLLLNA-NKINCLRVDAFQDLHNLNLLSLYDNKLQ-----------TIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp TCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCS-----------CCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCCEEECCC-CCCCEeCHHHcCCCCCCCEEECCCCcCC-----------EECHHHHhCCCCCCEEEeCCCC
Confidence 899999999999 5788888888899999999999999872 2233457778889888887764
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.35 E-value=2e-12 Score=153.29 Aligned_cols=128 Identities=27% Similarity=0.374 Sum_probs=80.1
Q ss_pred ccCCCceeEEeecCccccCCCcccccCccCcEEEcCCcccCCccccCCCCCCcEEEccCCCCcccchhhhccCCCCeeec
Q 037851 524 FIGTPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDGCELEDIRVIGELKDLEILSLQGSKIEQLPREIGQLTQLKLLDL 603 (1053)
Q Consensus 524 ~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l 603 (1053)
+..+++|+.|++++|.+..+|+ +..+++|++|+|++|.+..++.++.+++|++|+|++|.+..+| .+..|++|++|+|
T Consensus 61 l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~L 138 (605)
T 1m9s_A 61 IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYL 138 (605)
T ss_dssp GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEEC
T ss_pred HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCChhhccCCCCCEEEecCCCCCCCc-cccCCCccCEEEC
Confidence 4566667777777776666655 6666677777777776666666666677777777776666654 4666667777777
Q ss_pred cCcccccccCcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCCeEEEEeccCC
Q 037851 604 SNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLEINILDAG 669 (1053)
Q Consensus 604 ~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~ 669 (1053)
++| .+..+ ..++++++|+.|++++|.+. . +..+..+++|+.|+++.+...
T Consensus 139 s~N-~l~~l--~~l~~l~~L~~L~Ls~N~l~------------~-~~~l~~l~~L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 139 GNN-KITDI--TVLSRLTKLDTLSLEDNQIS------------D-IVPLAGLTKLQNLYLSKNHIS 188 (605)
T ss_dssp CSS-CCCCC--GGGGSCTTCSEEECCSSCCC------------C-CGGGTTCTTCCEEECCSSCCC
T ss_pred CCC-ccCCc--hhhcccCCCCEEECcCCcCC------------C-chhhccCCCCCEEECcCCCCC
Confidence 663 45554 23566667777776666551 1 111556666666666655443
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.35 E-value=9e-12 Score=134.42 Aligned_cols=161 Identities=25% Similarity=0.320 Sum_probs=111.9
Q ss_pred cceEEeeccCCCCCCCCCcccccCCCceeEEeecCccccCCCcccccCccCcEEEcCCcccCCccccCCCCCCcEEEccC
Q 037851 503 CSRISLYDNNINSPLKIPDNIFIGTPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDGCELEDIRVIGELKDLEILSLQG 582 (1053)
Q Consensus 503 ~~~l~l~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~~~~i~~l~~L~~L~l~~ 582 (1053)
.+.+.+..+.... ++. +..+++|++|++++|.+..++. +..+++|++|++++|.+..++.++.+++|++|++++
T Consensus 48 L~~L~l~~~~i~~---~~~--~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~ 121 (291)
T 1h6t_A 48 IDQIIANNSDIKS---VQG--IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEH 121 (291)
T ss_dssp CCEEECTTSCCCC---CTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTT
T ss_pred ccEEEccCCCccc---Chh--HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChhhccCCCCCEEECCC
Confidence 3455555444332 332 5677888888888888887776 788888888888888888777788888888888888
Q ss_pred CCCcccchhhhccCCCCeeeccCcccccccCcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCCeEE
Q 037851 583 SKIEQLPREIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLE 662 (1053)
Q Consensus 583 ~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~ 662 (1053)
|.+..+| .+..+++|++|++++| .+..+ ..++++++|++|++++|.+. .+..+..+++|+.|+
T Consensus 122 n~i~~~~-~l~~l~~L~~L~l~~n-~l~~~--~~l~~l~~L~~L~L~~N~l~-------------~~~~l~~l~~L~~L~ 184 (291)
T 1h6t_A 122 NGISDIN-GLVHLPQLESLYLGNN-KITDI--TVLSRLTKLDTLSLEDNQIS-------------DIVPLAGLTKLQNLY 184 (291)
T ss_dssp SCCCCCG-GGGGCTTCCEEECCSS-CCCCC--GGGGGCTTCSEEECCSSCCC-------------CCGGGTTCTTCCEEE
T ss_pred CcCCCCh-hhcCCCCCCEEEccCC-cCCcc--hhhccCCCCCEEEccCCccc-------------cchhhcCCCccCEEE
Confidence 8888774 5778888888888874 56665 23778888888888888762 112277778888888
Q ss_pred EEeccCCCCCCccccccCceEEEE
Q 037851 663 INILDAGILPSGFFSRKLKRYRIV 686 (1053)
Q Consensus 663 i~~~~~~~~~~~~~~~~L~~l~l~ 686 (1053)
++.+....++......+|+.|.+.
T Consensus 185 L~~N~i~~l~~l~~l~~L~~L~l~ 208 (291)
T 1h6t_A 185 LSKNHISDLRALAGLKNLDVLELF 208 (291)
T ss_dssp CCSSCCCBCGGGTTCTTCSEEEEE
T ss_pred CCCCcCCCChhhccCCCCCEEECc
Confidence 887766555432222445555443
No 105
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.34 E-value=1.6e-13 Score=155.42 Aligned_cols=104 Identities=22% Similarity=0.259 Sum_probs=64.2
Q ss_pred ceeEEeecCccccCCCcccccCccCcEEEcCCcccCC--c----cccCCCCCCcEEEccCCCCc----ccchhh------
Q 037851 529 KLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDGCELED--I----RVIGELKDLEILSLQGSKIE----QLPREI------ 592 (1053)
Q Consensus 529 ~Lr~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~--~----~~i~~l~~L~~L~l~~~~l~----~lp~~i------ 592 (1053)
.|+...++...+..++..+..+++|++|+|++|.+.. + ..+..+++|++|+|++|.+. .+|..+
T Consensus 10 ~L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~ 89 (386)
T 2ca6_A 10 SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQA 89 (386)
T ss_dssp CCEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHH
T ss_pred ccccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHH
Confidence 4444445555555666667777777777777776654 1 23566777777777776443 334444
Q ss_pred -hccCCCCeeeccCcccccc----cCcchhcCCccCceeecccccc
Q 037851 593 -GQLTQLKLLDLSNCSKLKV----IAPNVLSNLSQLEELYMANCSI 633 (1053)
Q Consensus 593 -~~L~~L~~L~l~~~~~l~~----~~~~~l~~l~~L~~L~l~~~~~ 633 (1053)
.++++|++|++++| .+.. ..+..+.++++|++|++++|.+
T Consensus 90 l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l 134 (386)
T 2ca6_A 90 LLKCPKLHTVRLSDN-AFGPTAQEPLIDFLSKHTPLEHLYLHNNGL 134 (386)
T ss_dssp HTTCTTCCEEECCSC-CCCTTTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred HhhCCcccEEECCCC-cCCHHHHHHHHHHHHhCCCCCEEECcCCCC
Confidence 56777777777774 4443 1233466777777777777765
No 106
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.32 E-value=8.1e-12 Score=128.59 Aligned_cols=145 Identities=18% Similarity=0.303 Sum_probs=113.2
Q ss_pred eEEeeccCCCCCCCCCcccccCCCceeEEeecCccccCCCc--ccccCccCcEEEcCCcccCCc--cccCCCCCCcEEEc
Q 037851 505 RISLYDNNINSPLKIPDNIFIGTPKLKVLDFTRMRLLSLPS--SIHLLTDLRTLCLDGCELEDI--RVIGELKDLEILSL 580 (1053)
Q Consensus 505 ~l~l~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~--~i~~l~~Lr~L~L~~~~~~~~--~~i~~l~~L~~L~l 580 (1053)
.+.+..+... .+|..+ ...++.|++++|.+..++. .+..+++|++|++++|.++.+ ..++.+++|++|+|
T Consensus 15 ~l~~s~n~l~---~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 88 (220)
T 2v70_A 15 TVDCSNQKLN---KIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILL 88 (220)
T ss_dssp EEECCSSCCS---SCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred EeEeCCCCcc---cCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEEC
Confidence 3444444433 266654 3456899999999987743 478999999999999998873 47899999999999
Q ss_pred cCCCCcccchh-hhccCCCCeeeccCcccccccCcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCC
Q 037851 581 QGSKIEQLPRE-IGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLT 659 (1053)
Q Consensus 581 ~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~ 659 (1053)
++|.+..+|.. +..+++|++|++++ +.+..+++..+.++++|++|++++|.+. ......+..+++|+
T Consensus 89 s~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~-----------~~~~~~~~~l~~L~ 156 (220)
T 2v70_A 89 TSNRLENVQHKMFKGLESLKTLMLRS-NRITCVGNDSFIGLSSVRLLSLYDNQIT-----------TVAPGAFDTLHSLS 156 (220)
T ss_dssp CSSCCCCCCGGGGTTCSSCCEEECTT-SCCCCBCTTSSTTCTTCSEEECTTSCCC-----------CBCTTTTTTCTTCC
T ss_pred CCCccCccCHhHhcCCcCCCEEECCC-CcCCeECHhHcCCCccCCEEECCCCcCC-----------EECHHHhcCCCCCC
Confidence 99999987654 78899999999998 5788887777889999999999998872 33356677888899
Q ss_pred eEEEEecc
Q 037851 660 SLEINILD 667 (1053)
Q Consensus 660 ~L~i~~~~ 667 (1053)
.|+++++.
T Consensus 157 ~L~L~~N~ 164 (220)
T 2v70_A 157 TLNLLANP 164 (220)
T ss_dssp EEECCSCC
T ss_pred EEEecCcC
Confidence 98887764
No 107
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.32 E-value=7.1e-13 Score=150.07 Aligned_cols=262 Identities=14% Similarity=0.071 Sum_probs=164.8
Q ss_pred ccCCCceeEEeecCccccC-----CCcccccCccCcEEEcCCcccCC-----ccc-------cCCCCCCcEEEccCCCCc
Q 037851 524 FIGTPKLKVLDFTRMRLLS-----LPSSIHLLTDLRTLCLDGCELED-----IRV-------IGELKDLEILSLQGSKIE 586 (1053)
Q Consensus 524 ~~~~~~Lr~L~l~~~~~~~-----lp~~i~~l~~Lr~L~L~~~~~~~-----~~~-------i~~l~~L~~L~l~~~~l~ 586 (1053)
+..+++|+.|++++|.+.. ++..+..+++|++|+|++|.+.. |.. +..+++|++|+|++|.+.
T Consensus 28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 4678899999999999873 45567899999999999986543 222 478999999999999987
Q ss_pred c-----cchhhhccCCCCeeeccCcccccccCcch----hcCC---------ccCceeecccccccccccCCcccccCCC
Q 037851 587 Q-----LPREIGQLTQLKLLDLSNCSKLKVIAPNV----LSNL---------SQLEELYMANCSIEWEHLGPGIERSNAS 648 (1053)
Q Consensus 587 ~-----lp~~i~~L~~L~~L~l~~~~~l~~~~~~~----l~~l---------~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 648 (1053)
. +|..+.++++|++|++++| .+....+.. +..+ ++|++|++++|.+... .....
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~-------~~~~l 179 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNN-GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG-------SMKEW 179 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSS-CCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGG-------GHHHH
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCC-CCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcH-------HHHHH
Confidence 5 7889999999999999996 454332222 3334 8999999999987210 01111
Q ss_pred hhhhcCCCCCCeEEEEeccCCCCCCccccccCceEEEEEcccCCCCCcccccceeeeccCCccccc-cccccCccceeec
Q 037851 649 LDELKNLSRLTSLEINILDAGILPSGFFSRKLKRYRIVVGFQWAPFDKYKTRRTLKLKLNSRICLE-EWRGMKNVEYLRL 727 (1053)
Q Consensus 649 ~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~~~~-~~~~l~~L~~L~L 727 (1053)
...+..+++|+.|+++.+..... ++ ....+ .+..+++|++|+|
T Consensus 180 ~~~l~~~~~L~~L~L~~n~l~~~--g~----------------------------------~~l~~~~l~~~~~L~~L~L 223 (386)
T 2ca6_A 180 AKTFQSHRLLHTVKMVQNGIRPE--GI----------------------------------EHLLLEGLAYCQELKVLDL 223 (386)
T ss_dssp HHHHHHCTTCCEEECCSSCCCHH--HH----------------------------------HHHHHTTGGGCTTCCEEEC
T ss_pred HHHHHhCCCcCEEECcCCCCCHh--HH----------------------------------HHHHHHHhhcCCCccEEEC
Confidence 24677888999999887643210 00 00011 1125677778888
Q ss_pred cccCCc----ccccccccccccccccEEEeecCCCceeecCC-ccccc--CcCCccceeeccccccccc-----cccccc
Q 037851 728 DELPGL----TNVLHDLDGEGFAELKHLNVKNNSNFLCIVDP-LQVRC--GAFPMLESLVLQNLINLER-----ICHGQL 795 (1053)
Q Consensus 728 ~~~~~~----~~~~~~l~~~~l~~L~~L~l~~~~~l~~i~~~-~~~~~--~~~p~L~~L~l~~~~~L~~-----~~~~~~ 795 (1053)
+++.-. ......+ ..+++|+.|++++|. +...... ..... +.+++|+.|+++++. +.. ++...
T Consensus 224 s~n~l~~~g~~~l~~~l--~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l- 298 (386)
T 2ca6_A 224 QDNTFTHLGSSALAIAL--KSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVI- 298 (386)
T ss_dssp CSSCCHHHHHHHHHHHG--GGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHH-
T ss_pred cCCCCCcHHHHHHHHHH--ccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHH-
Confidence 776532 1111222 467788888888875 2211000 00011 347888888888753 333 21111
Q ss_pred CccccCCccEEeEccCCCccccCC--chhhhccCCccEEEecc
Q 037851 796 RAESFCNLKTIKVGSCHKLKNLFS--FSIAKFLPQLKTIEVTE 836 (1053)
Q Consensus 796 ~~~~~~~L~~L~i~~c~~l~~l~~--~~~~~~l~~L~~L~l~~ 836 (1053)
...+++|+.|++.+|+ +....+ ......+++++.+++..
T Consensus 299 -~~~l~~L~~L~l~~N~-l~~~~~~~~~l~~~l~~~~~~~l~~ 339 (386)
T 2ca6_A 299 -DEKMPDLLFLELNGNR-FSEEDDVVDEIREVFSTRGRGELDE 339 (386)
T ss_dssp -HHHCTTCCEEECTTSB-SCTTSHHHHHHHHHHHHHTCCEECC
T ss_pred -HhcCCCceEEEccCCc-CCcchhHHHHHHHHhhhcCcchhhh
Confidence 1347999999999885 444321 12233455555555544
No 108
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.32 E-value=4e-12 Score=138.96 Aligned_cols=201 Identities=14% Similarity=0.102 Sum_probs=132.3
Q ss_pred CCceeEEeecCcccc-CCCccc--ccCccCcEEEcCCcccCCc------cccCCCCCCcEEEccCCCCcccc-hhhhccC
Q 037851 527 TPKLKVLDFTRMRLL-SLPSSI--HLLTDLRTLCLDGCELEDI------RVIGELKDLEILSLQGSKIEQLP-REIGQLT 596 (1053)
Q Consensus 527 ~~~Lr~L~l~~~~~~-~lp~~i--~~l~~Lr~L~L~~~~~~~~------~~i~~l~~L~~L~l~~~~l~~lp-~~i~~L~ 596 (1053)
+++|+.|++++|.+. ..|..+ ..+.+|++|++++|.+... ..+..+++|++|++++|.+..+| ..++.++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 456888888888877 456666 7888888888888887651 33457888888888888887665 5677888
Q ss_pred CCCeeeccCcccccc--cC-cchhcCCccCceeecccccccccccCCcccccCCChhh-hcCCCCCCeEEEEeccCCCC-
Q 037851 597 QLKLLDLSNCSKLKV--IA-PNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDE-LKNLSRLTSLEINILDAGIL- 671 (1053)
Q Consensus 597 ~L~~L~l~~~~~l~~--~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-L~~l~~L~~L~i~~~~~~~~- 671 (1053)
+|++|++++|.-... ++ +..++++++|++|++++|.+.. ....... ++.+++|+.|+++++.....
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~---------l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~ 240 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET---------PTGVCAALAAAGVQPHSLDLSHNSLRATV 240 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC---------HHHHHHHHHHHTCCCSSEECTTSCCCCCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc---------hHHHHHHHHhcCCCCCEEECCCCCCCccc
Confidence 888888888532221 22 2223678888888888887620 0111111 36778888888887776554
Q ss_pred CCccccccCceEEEEEcccCCCCCcccccceeeeccCCccccccccccCccceeeccccCCcccccccccccccccccEE
Q 037851 672 PSGFFSRKLKRYRIVVGFQWAPFDKYKTRRTLKLKLNSRICLEEWRGMKNVEYLRLDELPGLTNVLHDLDGEGFAELKHL 751 (1053)
Q Consensus 672 ~~~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~l~~L~~L 751 (1053)
|..+. .....+.++.|.++.+....+|... +++|+.|+++++.-. . ++.+ ..+++|+.|
T Consensus 241 p~~~~----------------~~~~~~~L~~L~Ls~N~l~~lp~~~-~~~L~~L~Ls~N~l~-~-~~~~--~~l~~L~~L 299 (310)
T 4glp_A 241 NPSAP----------------RCMWSSALNSLNLSFAGLEQVPKGL-PAKLRVLDLSSNRLN-R-APQP--DELPEVDNL 299 (310)
T ss_dssp CSCCS----------------SCCCCTTCCCEECCSSCCCSCCSCC-CSCCSCEECCSCCCC-S-CCCT--TSCCCCSCE
T ss_pred hhhHH----------------hccCcCcCCEEECCCCCCCchhhhh-cCCCCEEECCCCcCC-C-Cchh--hhCCCccEE
Confidence 33221 0111245566666666555555544 379999999886533 2 2232 578999999
Q ss_pred EeecCC
Q 037851 752 NVKNNS 757 (1053)
Q Consensus 752 ~l~~~~ 757 (1053)
++++++
T Consensus 300 ~L~~N~ 305 (310)
T 4glp_A 300 TLDGNP 305 (310)
T ss_dssp ECSSTT
T ss_pred ECcCCC
Confidence 999886
No 109
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.31 E-value=6.5e-12 Score=137.25 Aligned_cols=224 Identities=13% Similarity=0.062 Sum_probs=149.5
Q ss_pred CCceeEEeecCccccC--CCc--ccccCccCcEEEcCCcccCC--cccc--CCCCCCcEEEccCCCCcc-cc----hhhh
Q 037851 527 TPKLKVLDFTRMRLLS--LPS--SIHLLTDLRTLCLDGCELED--IRVI--GELKDLEILSLQGSKIEQ-LP----REIG 593 (1053)
Q Consensus 527 ~~~Lr~L~l~~~~~~~--lp~--~i~~l~~Lr~L~L~~~~~~~--~~~i--~~l~~L~~L~l~~~~l~~-lp----~~i~ 593 (1053)
...++.|.+.++.+.. +.. ....+.+|++|++++|.+.. +..+ +.+++|++|++++|.+.. .| ..+.
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 3456778888876641 111 12345679999999999876 5566 899999999999999884 23 3456
Q ss_pred ccCCCCeeeccCcccccccCcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCCeEEEEeccCCCCCC
Q 037851 594 QLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLEINILDAGILPS 673 (1053)
Q Consensus 594 ~L~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~ 673 (1053)
.+++|++|++++ +.+..+++..++++++|++|++++|.+.... .......++.+++|+.|+++.+....++.
T Consensus 143 ~~~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-------~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~ 214 (310)
T 4glp_A 143 LKPGLKVLSIAQ-AHSPAFSCEQVRAFPALTSLDLSDNPGLGER-------GLMAALCPHKFPAIQNLALRNTGMETPTG 214 (310)
T ss_dssp BCSCCCEEEEEC-CSSCCCCTTSCCCCTTCCEEECCSCTTCHHH-------HHHTTSCTTSSCCCCSCBCCSSCCCCHHH
T ss_pred hccCCCEEEeeC-CCcchhhHHHhccCCCCCEEECCCCCCccch-------hhhHHHhhhcCCCCCEEECCCCCCCchHH
Confidence 799999999999 4678888888899999999999999752100 00001123578899999998887654333
Q ss_pred ccccccCceEEEEEcccCCCCCcccccceeeeccCCcccc-cc-ccc---cCccceeeccccCCcccccccccccccccc
Q 037851 674 GFFSRKLKRYRIVVGFQWAPFDKYKTRRTLKLKLNSRICL-EE-WRG---MKNVEYLRLDELPGLTNVLHDLDGEGFAEL 748 (1053)
Q Consensus 674 ~~~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~~~-~~-~~~---l~~L~~L~L~~~~~~~~~~~~l~~~~l~~L 748 (1053)
.... .......++.|+++.+..... |. +.. +++|++|+++++.-. .. +. .-+++|
T Consensus 215 ~~~~---------------l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~l-p~---~~~~~L 274 (310)
T 4glp_A 215 VCAA---------------LAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QV-PK---GLPAKL 274 (310)
T ss_dssp HHHH---------------HHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SC-CS---CCCSCC
T ss_pred HHHH---------------HHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-ch-hh---hhcCCC
Confidence 2100 001224556666666654443 22 223 479999999986533 22 22 234899
Q ss_pred cEEEeecCCCceeecCCcccccCcCCccceeecccc
Q 037851 749 KHLNVKNNSNFLCIVDPLQVRCGAFPMLESLVLQNL 784 (1053)
Q Consensus 749 ~~L~l~~~~~l~~i~~~~~~~~~~~p~L~~L~l~~~ 784 (1053)
+.|++++|. ++.+. ....+|+|+.|++++.
T Consensus 275 ~~L~Ls~N~-l~~~~-----~~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 275 RVLDLSSNR-LNRAP-----QPDELPEVDNLTLDGN 304 (310)
T ss_dssp SCEECCSCC-CCSCC-----CTTSCCCCSCEECSST
T ss_pred CEEECCCCc-CCCCc-----hhhhCCCccEEECcCC
Confidence 999999986 33221 1457899999999884
No 110
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.30 E-value=1.4e-11 Score=126.68 Aligned_cols=129 Identities=19% Similarity=0.311 Sum_probs=111.9
Q ss_pred eEEeecCccccCCCcccccCccCcEEEcCCcccCCc--cccCCCCCCcEEEccCCCCccc-chhhhccCCCCeeeccCcc
Q 037851 531 KVLDFTRMRLLSLPSSIHLLTDLRTLCLDGCELEDI--RVIGELKDLEILSLQGSKIEQL-PREIGQLTQLKLLDLSNCS 607 (1053)
Q Consensus 531 r~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~~--~~i~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~ 607 (1053)
+.++.+++.++.+|..+. .+|++|++++|.+..+ ..+..+++|++|+|++|.+..+ |..+..+++|++|++++ +
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~-N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG-N 90 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS-S
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC-C
Confidence 578899999999998765 7899999999999883 4799999999999999999977 77899999999999999 5
Q ss_pred cccccCcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCCeEEEEeccCCCCCC
Q 037851 608 KLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLEINILDAGILPS 673 (1053)
Q Consensus 608 ~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~ 673 (1053)
.+..+|+..+.++++|++|++++|.+ .......+..+++|+.|+++++....++.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l-----------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 145 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKI-----------NCLRVDAFQDLHNLNLLSLYDNKLQTIAK 145 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCC-----------CCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred cCCccCHhHccCCCCCCEEECCCCCC-----------CEeCHHHcCCCCCCCEEECCCCcCCEECH
Confidence 78899888889999999999999987 23345678889999999999887666554
No 111
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.30 E-value=2.3e-10 Score=129.36 Aligned_cols=281 Identities=13% Similarity=0.075 Sum_probs=172.4
Q ss_pred ccccchHHHHHHHHHHhc----CCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcC----C--CCeEEEEEEcCCc-CHHHH
Q 037851 153 EAFESRMSTLKSLQNALL----DPDVTITGVYGMGGLGKTTLVKEVARQVKKDK----H--FDEVVFAEVSDTP-DIKKV 221 (1053)
Q Consensus 153 ~~~~gR~~~~~~l~~~l~----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~--f~~~~wv~~s~~~-~~~~~ 221 (1053)
..++||+++++++.+++. ....+.+.|+|++|+||||+|+.+++...... . ...++|++++... +...+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 568999999999887764 34467899999999999999999999864321 1 3457788887777 88889
Q ss_pred HHHHHHHhC-CCCCCC-CChhHHHHHHHHHHhcCCcEEEEEcCCCCccc-------hhhhcCCCCCCCCCcEEEEEecCh
Q 037851 222 QGELADQLG-MQFDEE-SDVPGRARKLYARLQKENKILIILDNIWEDLD-------LEKVGVPSGNDCRGCKVLLTARDR 292 (1053)
Q Consensus 222 ~~~i~~~l~-~~~~~~-~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~-------~~~l~~~~~~~~~gs~iivTtR~~ 292 (1053)
+..++.++. ...... .........+.+.+. .++.+|||||++.... +..+.... .+..||+||+..
T Consensus 100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~-~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~----~~~~iI~~t~~~ 174 (384)
T 2qby_B 100 LSSLAGKLTGFSVPKHGINLGEYIDKIKNGTR-NIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD----ANISVIMISNDI 174 (384)
T ss_dssp HHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHS-SSCEEEEEETTHHHHHSTTSHHHHHHHHTSS----SCEEEEEECSST
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhc-cCCCEEEEECHHHhccCCCCceeHHHHhcCC----cceEEEEEECCC
Confidence 999998883 222111 122344566666664 4445999999976422 22222222 578899999875
Q ss_pred HHH----Hhh--C-CCcccccCCCHHHHHHHHHHHhCC-CCCCccchHHHHHHHHHhC---CCch-HHHHHHHHH--h--
Q 037851 293 HVL----ESI--G-SKTLRIDVLNDEEAWTLFKKMTGD-CAEKGELKSIATDVAKECG---GLPI-AIVTLAKAL--R-- 356 (1053)
Q Consensus 293 ~v~----~~~--~-~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~~~i~~~~~---GlPl-ai~~~~~~L--~-- 356 (1053)
... ... . ...+.+.+++.++..+++...+.. .....--++..+.|++.++ |.|. |+..+-... .
T Consensus 175 ~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~ 254 (384)
T 2qby_B 175 NVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLASG 254 (384)
T ss_dssp TTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTS
T ss_pred chHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcC
Confidence 321 111 1 248999999999999999987531 1111122456778888888 8887 444443333 2
Q ss_pred -cCCCHHHHHHHHHHhcCCCCCchhhhHHHhhhhHHhhhcccChhhhHHHHHhcCCCCCCCchh-HHHHHHHHHhccccC
Q 037851 357 -NKTSVSTWKDALRQLKRPSHRNFEGVLAKTYSAIELSYKYLREEELKKLFLQCSLMGSPQAST-LNLLKYAIGLGIVKG 434 (1053)
Q Consensus 357 -~~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~cfl~~s~fp~~~~~~-~~li~~w~a~g~~~~ 434 (1053)
..-+.+.+..+++... ...+.-++..|+++ .+..+..++... ..-+. +.........| ...
T Consensus 255 ~~~i~~~~v~~~~~~~~--------------~~~~~~~~~~l~~~-~~~~l~al~~~~-~~~~~~~~~~~~~~~~g-~~~ 317 (384)
T 2qby_B 255 GGIIRKEHVDKAIVDYE--------------QERLIEAVKALPFH-YKLALRSLIESE-DVMSAHKMYTDLCNKFK-QKP 317 (384)
T ss_dssp SSCCCHHHHHHHHHHHH--------------HHHHHHHHHSSCHH-HHHHHHHHHTCC-BHHHHHHHHHHHHHHTT-CCC
T ss_pred CCccCHHHHHHHHHHHh--------------cchHHHHHHcCCHH-HHHHHHHHHHhc-ccChHHHHHHHHHHHcC-CCC
Confidence 1235666666665421 13455677888873 455555455411 10111 12222222223 111
Q ss_pred ccCHHHHHHHHHHHHHHHHhhccccc
Q 037851 435 VGTVEEARDKVNTLVDQLRDACLLLD 460 (1053)
Q Consensus 435 ~~~~~~~~~~~~~~~~~L~~~~l~~~ 460 (1053)
.+ ...+.++++.|...+++..
T Consensus 318 -~~----~~~~~~~l~~L~~~gli~~ 338 (384)
T 2qby_B 318 -LS----YRRFSDIISELDMFGIVKI 338 (384)
T ss_dssp -CC----HHHHHHHHHHHHHTTSEEE
T ss_pred -CC----HHHHHHHHHHHHhCCCEEE
Confidence 11 1334567888999999865
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.30 E-value=1.4e-11 Score=127.79 Aligned_cols=135 Identities=22% Similarity=0.340 Sum_probs=98.5
Q ss_pred CCcccccCCCceeEEeecCccccCC-CcccccCccCcEEEcCCcccCCc--cccCCCCCCcEEEccCCCCcccchh-hhc
Q 037851 519 IPDNIFIGTPKLKVLDFTRMRLLSL-PSSIHLLTDLRTLCLDGCELEDI--RVIGELKDLEILSLQGSKIEQLPRE-IGQ 594 (1053)
Q Consensus 519 ~~~~~~~~~~~Lr~L~l~~~~~~~l-p~~i~~l~~Lr~L~L~~~~~~~~--~~i~~l~~L~~L~l~~~~l~~lp~~-i~~ 594 (1053)
+|..+ .++|++|++++|.+..+ |..+..+.+|++|+|++|.+..+ ..++.+++|++|+|++|.+..+|.. +..
T Consensus 34 ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~ 110 (229)
T 3e6j_A 34 VPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDR 110 (229)
T ss_dssp CCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred cCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCc
Confidence 56544 36788888888888766 55677888888888888887763 4467888888888888888877654 577
Q ss_pred cCCCCeeeccCcccccccCcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCCeEEEEeccCC
Q 037851 595 LTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLEINILDAG 669 (1053)
Q Consensus 595 L~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~ 669 (1053)
+++|++|++++ +.+..+|.. +.++++|++|++++|.+. ......+..+++|+.|++.++...
T Consensus 111 l~~L~~L~Ls~-N~l~~lp~~-~~~l~~L~~L~L~~N~l~-----------~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 111 LVHLKELFMCC-NKLTELPRG-IERLTHLTHLALDQNQLK-----------SIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CTTCCEEECCS-SCCCSCCTT-GGGCTTCSEEECCSSCCC-----------CCCTTTTTTCTTCCEEECTTSCBC
T ss_pred chhhCeEeccC-CcccccCcc-cccCCCCCEEECCCCcCC-----------ccCHHHHhCCCCCCEEEeeCCCcc
Confidence 88888888888 467777543 678888888888888762 222245677778888888776543
No 113
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.29 E-value=1e-10 Score=132.47 Aligned_cols=287 Identities=15% Similarity=0.127 Sum_probs=174.2
Q ss_pred ccccchHHHHHHHHHHhc----CCCeeEEEEEcCCCCcHHHHHHHHHHHhhhc----CCCCeEEEEEEcCCcCHHHHHHH
Q 037851 153 EAFESRMSTLKSLQNALL----DPDVTITGVYGMGGLGKTTLVKEVARQVKKD----KHFDEVVFAEVSDTPDIKKVQGE 224 (1053)
Q Consensus 153 ~~~~gR~~~~~~l~~~l~----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~----~~f~~~~wv~~s~~~~~~~~~~~ 224 (1053)
..++||+++++++.+++. ....+.+.|+|++|+||||+|+.+++..... +.-...+|+++....+...++..
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 98 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASA 98 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHH
Confidence 578999999999999884 3456789999999999999999999887432 11234678888888889999999
Q ss_pred HHHHhCCCCCCCCC-hhHHHHHHHHHHh-cCCcEEEEEcCCCCccc----hhhh---cCCCCCC--CCCcEEEEEecChH
Q 037851 225 LADQLGMQFDEESD-VPGRARKLYARLQ-KENKILIILDNIWEDLD----LEKV---GVPSGND--CRGCKVLLTARDRH 293 (1053)
Q Consensus 225 i~~~l~~~~~~~~~-~~~~~~~l~~~l~-~~~~~LlvlDdv~~~~~----~~~l---~~~~~~~--~~gs~iivTtR~~~ 293 (1053)
++.+++........ .......+.+.+. .+++.+|||||++.... .+.+ ....... ..+..+|+||+...
T Consensus 99 l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~ 178 (387)
T 2v1u_A 99 IAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLG 178 (387)
T ss_dssp HHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCST
T ss_pred HHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCc
Confidence 99999765433222 3334556666664 35689999999976532 1211 1111111 34567888887653
Q ss_pred H--------HHhhCCCcccccCCCHHHHHHHHHHHhCC-CCCCccchHHHHHHHHHhC---CCch-HHHHHHHHHh----
Q 037851 294 V--------LESIGSKTLRIDVLNDEEAWTLFKKMTGD-CAEKGELKSIATDVAKECG---GLPI-AIVTLAKALR---- 356 (1053)
Q Consensus 294 v--------~~~~~~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~~~i~~~~~---GlPl-ai~~~~~~L~---- 356 (1053)
. ...++...+.+.+++.++..+++...+.. .....--++..+.|++.++ |.|. |+..+.....
T Consensus 179 ~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~ 258 (387)
T 2v1u_A 179 FVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAER 258 (387)
T ss_dssp TSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHH
T ss_pred hHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence 2 11122347899999999999999887531 0011112345778888888 9994 3333333221
Q ss_pred -c--CCCHHHHHHHHHHhcCCCCCchhhhHHHhhhhHHhhhcccChhhhHHHHHhcC-CCCCC-CchhHHHHHHH----H
Q 037851 357 -N--KTSVSTWKDALRQLKRPSHRNFEGVLAKTYSAIELSYKYLREEELKKLFLQCS-LMGSP-QASTLNLLKYA----I 427 (1053)
Q Consensus 357 -~--~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~cfl~~s-~fp~~-~~~~~~li~~w----~ 427 (1053)
+ .-+.+.++.+++.. ....+.-++..|+++ .+..+...+ ++..+ .+...++.+.. .
T Consensus 259 ~~~~~i~~~~v~~a~~~~--------------~~~~~~~~~~~l~~~-~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (387)
T 2v1u_A 259 RREERVRREHVYSARAEI--------------ERDRVSEVVRTLPLH-AKLVLLSIMMLEDGGRPASTGEIYERYKELTS 323 (387)
T ss_dssp TTCSCBCHHHHHHHHHHH--------------HHHHHHHHHHSSCHH-HHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHH
T ss_pred cCCCCcCHHHHHHHHHHH--------------hhchHHHHHHcCCHH-HHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence 1 12556666655532 112345567888874 444444344 33222 24444444332 1
Q ss_pred HhccccCccCHHHHHHHHHHHHHHHHhhccccc
Q 037851 428 GLGIVKGVGTVEEARDKVNTLVDQLRDACLLLD 460 (1053)
Q Consensus 428 a~g~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~ 460 (1053)
..| ... .+ ...+.++++.|...+++..
T Consensus 324 ~~~-~~~-~~----~~~~~~~l~~L~~~gli~~ 350 (387)
T 2v1u_A 324 TLG-LEH-VT----LRRVSGIISELDMLGIVKS 350 (387)
T ss_dssp HTT-CCC-CC----HHHHHHHHHHHHHTTSEEE
T ss_pred hcC-CCC-CC----HHHHHHHHHHHHhCCCeEE
Confidence 222 111 11 2345567888999998865
No 114
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.29 E-value=3.7e-12 Score=122.41 Aligned_cols=126 Identities=25% Similarity=0.286 Sum_probs=104.5
Q ss_pred CCCceeEEeecCcccc--CCCcccccCccCcEEEcCCcccCCccccCCCCCCcEEEccCCCCcc-cchhhhccCCCCeee
Q 037851 526 GTPKLKVLDFTRMRLL--SLPSSIHLLTDLRTLCLDGCELEDIRVIGELKDLEILSLQGSKIEQ-LPREIGQLTQLKLLD 602 (1053)
Q Consensus 526 ~~~~Lr~L~l~~~~~~--~lp~~i~~l~~Lr~L~L~~~~~~~~~~i~~l~~L~~L~l~~~~l~~-lp~~i~~L~~L~~L~ 602 (1053)
..++|+.|++++|.+. .+|..+..+++|++|++++|.+.....++.+++|++|++++|.+.. +|..++++++|++|+
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 3467899999999998 7898889999999999999998888889999999999999999987 788888899999999
Q ss_pred ccCcccccccC-cchhcCCccCceeecccccccccccCCcccccCCCh---hhhcCCCCCCeEEE
Q 037851 603 LSNCSKLKVIA-PNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASL---DELKNLSRLTSLEI 663 (1053)
Q Consensus 603 l~~~~~l~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~---~~L~~l~~L~~L~i 663 (1053)
+++| .+..++ +..++++++|++|++++|.+. .... ..+..+++|+.|++
T Consensus 95 ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N~l~-----------~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 95 LSGN-KIKDLSTIEPLKKLENLKSLDLFNCEVT-----------NLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp CTTS-CCCSHHHHGGGGGCTTCCEEECTTCGGG-----------GSTTHHHHHHHHCTTCCEETT
T ss_pred CCCC-cCCChHHHHHHhhCCCCCEEeCcCCccc-----------chHHHHHHHHHHCCCcccccC
Confidence 9994 577653 256889999999999999772 1111 35777888888764
No 115
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.26 E-value=3.8e-11 Score=124.49 Aligned_cols=129 Identities=27% Similarity=0.406 Sum_probs=110.5
Q ss_pred eeEEeecCccccCCCcccccCccCcEEEcCCcccCC--ccccCCCCCCcEEEccCCCCcccchh-hhccCCCCeeeccCc
Q 037851 530 LKVLDFTRMRLLSLPSSIHLLTDLRTLCLDGCELED--IRVIGELKDLEILSLQGSKIEQLPRE-IGQLTQLKLLDLSNC 606 (1053)
Q Consensus 530 Lr~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~ 606 (1053)
-+.++.+++.+..+|..+. .+|++|++++|.+.. +..++.+++|++|+|++|.+..+|.. +..+++|++|++++
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~- 97 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT- 97 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC-
Confidence 3568888999999998665 899999999999988 46789999999999999999999865 58999999999999
Q ss_pred ccccccCcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCCeEEEEeccCCCCCC
Q 037851 607 SKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLEINILDAGILPS 673 (1053)
Q Consensus 607 ~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~ 673 (1053)
+.+..+++..+..+++|++|++++|.+. ..+..+..+++|+.|+++.+....++.
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~------------~lp~~~~~l~~L~~L~L~~N~l~~~~~ 152 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT------------ELPRGIERLTHLTHLALDQNQLKSIPH 152 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC------------SCCTTGGGCTTCSEEECCSSCCCCCCT
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc------------ccCcccccCCCCCEEECCCCcCCccCH
Confidence 5788898887899999999999999872 344567889999999999887665544
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.25 E-value=2.3e-11 Score=128.93 Aligned_cols=143 Identities=23% Similarity=0.292 Sum_probs=87.1
Q ss_pred cceEEeeccCCCCCCCCCcccccCCCceeEEeecCccccCCCcccccCccCcEEEcCCcccCCccccCCCCCCcEEEccC
Q 037851 503 CSRISLYDNNINSPLKIPDNIFIGTPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDGCELEDIRVIGELKDLEILSLQG 582 (1053)
Q Consensus 503 ~~~l~l~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~~~~i~~l~~L~~L~l~~ 582 (1053)
.+.+.+..+.... ++ .+..+++|+.|++++|.+..+|. +..+++|++|++++|.+..++.+.. .+|++|++++
T Consensus 43 L~~L~l~~n~i~~---l~--~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~-~~L~~L~L~~ 115 (263)
T 1xeu_A 43 VQNFNGDNSNIQS---LA--GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIPS-ACLSRLFLDN 115 (263)
T ss_dssp CSEEECTTSCCCC---CT--TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTCCC-SSCCEEECCS
T ss_pred CcEEECcCCCccc---ch--HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCcccc-CcccEEEccC
Confidence 4555555544432 33 24566667777777776666665 6666777777777776666444444 6677777777
Q ss_pred CCCcccchhhhccCCCCeeeccCcccccccCcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCCeEE
Q 037851 583 SKIEQLPREIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLE 662 (1053)
Q Consensus 583 ~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~ 662 (1053)
|.+..+| .+.++++|++|++++ +.+..++ .++.+++|++|++++|.+. .+..+..+++|+.|+
T Consensus 116 N~l~~~~-~l~~l~~L~~L~Ls~-N~i~~~~--~l~~l~~L~~L~L~~N~i~-------------~~~~l~~l~~L~~L~ 178 (263)
T 1xeu_A 116 NELRDTD-SLIHLKNLEILSIRN-NKLKSIV--MLGFLSKLEVLDLHGNEIT-------------NTGGLTRLKKVNWID 178 (263)
T ss_dssp SCCSBSG-GGTTCTTCCEEECTT-SCCCBCG--GGGGCTTCCEEECTTSCCC-------------BCTTSTTCCCCCEEE
T ss_pred CccCCCh-hhcCcccccEEECCC-CcCCCCh--HHccCCCCCEEECCCCcCc-------------chHHhccCCCCCEEe
Confidence 7666665 466667777777766 3455553 2566677777777666651 114455666666666
Q ss_pred EEeccCC
Q 037851 663 INILDAG 669 (1053)
Q Consensus 663 i~~~~~~ 669 (1053)
++++...
T Consensus 179 l~~N~~~ 185 (263)
T 1xeu_A 179 LTGQKCV 185 (263)
T ss_dssp EEEEEEE
T ss_pred CCCCccc
Confidence 6665543
No 117
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.25 E-value=1.9e-11 Score=125.79 Aligned_cols=128 Identities=19% Similarity=0.369 Sum_probs=111.9
Q ss_pred cceEEeeccCCCCCCCCCcccccCCCceeEEeecCccccCCCc-ccccCccCcEEEcCCcccCC--ccccCCCCCCcEEE
Q 037851 503 CSRISLYDNNINSPLKIPDNIFIGTPKLKVLDFTRMRLLSLPS-SIHLLTDLRTLCLDGCELED--IRVIGELKDLEILS 579 (1053)
Q Consensus 503 ~~~l~l~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~-~i~~l~~Lr~L~L~~~~~~~--~~~i~~l~~L~~L~ 579 (1053)
.+.+.+..+.+... .+..+|.++++|++|++++|.+..++. .+..+.+|++|+|++|.+.. +..++.+++|++|+
T Consensus 34 ~~~L~L~~N~l~~~--~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 111 (220)
T 2v70_A 34 TAELRLNNNEFTVL--EATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLM 111 (220)
T ss_dssp CSEEECCSSCCCEE--CCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEE
T ss_pred CCEEEcCCCcCCcc--CchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEE
Confidence 56788877766541 245668899999999999999998765 79999999999999999988 35599999999999
Q ss_pred ccCCCCccc-chhhhccCCCCeeeccCcccccccCcchhcCCccCceeecccccc
Q 037851 580 LQGSKIEQL-PREIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSI 633 (1053)
Q Consensus 580 l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 633 (1053)
+++|.+..+ |..+..+++|++|++++ +.+..+++..+..+++|+.|++++|.+
T Consensus 112 Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 112 LRSNRITCVGNDSFIGLSSVRLLSLYD-NQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp CTTSCCCCBCTTSSTTCTTCSEEECTT-SCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred CCCCcCCeECHhHcCCCccCCEEECCC-CcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 999999977 67789999999999999 578888888899999999999999987
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.25 E-value=5.2e-11 Score=126.21 Aligned_cols=146 Identities=21% Similarity=0.220 Sum_probs=122.5
Q ss_pred ccCCCceeEEeecCccccCCCcccccCccCcEEEcCCcccCCccccCCCCCCcEEEccCCCCcccchhhhccCCCCeeec
Q 037851 524 FIGTPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDGCELEDIRVIGELKDLEILSLQGSKIEQLPREIGQLTQLKLLDL 603 (1053)
Q Consensus 524 ~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l 603 (1053)
+..+++|++|++++|.+..+| .+..+++|++|++++|.+...+.++.+++|++|++++|.+..+|.... .+|++|++
T Consensus 37 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L 113 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLFL 113 (263)
T ss_dssp HHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEEC
T ss_pred hhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCccCCcCcccc--CcccEEEc
Confidence 567899999999999999998 689999999999999999986559999999999999999999885434 99999999
Q ss_pred cCcccccccCcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCCeEEEEeccCCCCCCccccccCceE
Q 037851 604 SNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLEINILDAGILPSGFFSRKLKRY 683 (1053)
Q Consensus 604 ~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~~~~~~~~~~L~~l 683 (1053)
++| .+..++ .++++++|++|++++|.+. .+..+..+++|+.|+++++.....+......+|+.|
T Consensus 114 ~~N-~l~~~~--~l~~l~~L~~L~Ls~N~i~-------------~~~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L 177 (263)
T 1xeu_A 114 DNN-ELRDTD--SLIHLKNLEILSIRNNKLK-------------SIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWI 177 (263)
T ss_dssp CSS-CCSBSG--GGTTCTTCCEEECTTSCCC-------------BCGGGGGCTTCCEEECTTSCCCBCTTSTTCCCCCEE
T ss_pred cCC-ccCCCh--hhcCcccccEEECCCCcCC-------------CChHHccCCCCCEEECCCCcCcchHHhccCCCCCEE
Confidence 994 777764 3899999999999999872 234688899999999998887666333334788888
Q ss_pred EEEEc
Q 037851 684 RIVVG 688 (1053)
Q Consensus 684 ~l~~~ 688 (1053)
.+..+
T Consensus 178 ~l~~N 182 (263)
T 1xeu_A 178 DLTGQ 182 (263)
T ss_dssp EEEEE
T ss_pred eCCCC
Confidence 88654
No 119
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.24 E-value=1.6e-11 Score=121.68 Aligned_cols=134 Identities=14% Similarity=0.238 Sum_probs=108.5
Q ss_pred ccCCCceeEEeecCccccCCCcccccCc-cCcEEEcCCcccCCccccCCCCCCcEEEccCCCCcccchhh-hccCCCCee
Q 037851 524 FIGTPKLKVLDFTRMRLLSLPSSIHLLT-DLRTLCLDGCELEDIRVIGELKDLEILSLQGSKIEQLPREI-GQLTQLKLL 601 (1053)
Q Consensus 524 ~~~~~~Lr~L~l~~~~~~~lp~~i~~l~-~Lr~L~L~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i-~~L~~L~~L 601 (1053)
|..+.+|+.|++++|.+..+|. +..+. +|++|++++|.+..++.++.+++|++|++++|.+..+|..+ +.+++|++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred cCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 4578899999999999998865 55555 99999999999988888999999999999999999998665 899999999
Q ss_pred eccCcccccccCc-chhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCCeEEEEecc
Q 037851 602 DLSNCSKLKVIAP-NVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLEINILD 667 (1053)
Q Consensus 602 ~l~~~~~l~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~ 667 (1053)
++++ +.+..+|+ ..++++++|++|++++|.+... .......+..+++|+.|+++.+.
T Consensus 94 ~L~~-N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~--------~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 94 ILTN-NSLVELGDLDPLASLKSLTYLCILRNPVTNK--------KHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp ECCS-CCCCCGGGGGGGGGCTTCCEEECCSSGGGGS--------TTHHHHHHHHCTTCSEETTEECC
T ss_pred ECCC-CcCCcchhhHhhhcCCCCCEEEecCCCCCCc--------HhHHHHHHHHCCccceeCCCcCC
Confidence 9999 46777764 3578999999999999987210 00111237788899998887654
No 120
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.24 E-value=3.7e-11 Score=142.40 Aligned_cols=147 Identities=27% Similarity=0.407 Sum_probs=123.7
Q ss_pred cceEEeeccCCCCCCCCCcccccCCCceeEEeecCccccCCCcccccCccCcEEEcCCcccCCccccCCCCCCcEEEccC
Q 037851 503 CSRISLYDNNINSPLKIPDNIFIGTPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDGCELEDIRVIGELKDLEILSLQG 582 (1053)
Q Consensus 503 ~~~l~l~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~~~~i~~l~~L~~L~l~~ 582 (1053)
.+.|.+..+.+.. +++ +..+++|+.|++++|.+..+| .+..+++|++|+|++|.+..++.++.|++|++|+|++
T Consensus 67 L~~L~Ls~N~l~~---~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~ 140 (605)
T 1m9s_A 67 VTKLFLNGNKLTD---IKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGN 140 (605)
T ss_dssp CCEEECTTSCCCC---CGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSCCCCCGGGGGCTTCSEEECCS
T ss_pred CCEEEeeCCCCCC---Chh--hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCCCCCCCccccCCCccCEEECCC
Confidence 5677777766554 444 678999999999999998877 5899999999999999999988899999999999999
Q ss_pred CCCcccchhhhccCCCCeeeccCcccccccCcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCCeEE
Q 037851 583 SKIEQLPREIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLE 662 (1053)
Q Consensus 583 ~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~ 662 (1053)
|.+..+ ..+..|++|++|+|++| .+..+++ +..+++|+.|++++|.+. .+..+..+++|+.|+
T Consensus 141 N~l~~l-~~l~~l~~L~~L~Ls~N-~l~~~~~--l~~l~~L~~L~Ls~N~i~-------------~l~~l~~l~~L~~L~ 203 (605)
T 1m9s_A 141 NKITDI-TVLSRLTKLDTLSLEDN-QISDIVP--LAGLTKLQNLYLSKNHIS-------------DLRALAGLKNLDVLE 203 (605)
T ss_dssp SCCCCC-GGGGSCTTCSEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCC-------------BCGGGTTCTTCSEEE
T ss_pred CccCCc-hhhcccCCCCEEECcCC-cCCCchh--hccCCCCCEEECcCCCCC-------------CChHHccCCCCCEEE
Confidence 999988 57899999999999995 6777766 889999999999999872 235688899999999
Q ss_pred EEeccCCCCC
Q 037851 663 INILDAGILP 672 (1053)
Q Consensus 663 i~~~~~~~~~ 672 (1053)
++.+.....|
T Consensus 204 L~~N~l~~~p 213 (605)
T 1m9s_A 204 LFSQECLNKP 213 (605)
T ss_dssp CCSEEEECCC
T ss_pred ccCCcCcCCc
Confidence 9887654443
No 121
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.23 E-value=6.3e-11 Score=121.02 Aligned_cols=134 Identities=28% Similarity=0.437 Sum_probs=100.6
Q ss_pred CCcccccCCCceeEEeecCccccCCCcc-cccCccCcEEEcCCcccCCc--cccCCCCCCcEEEccCCCCcccchh-hhc
Q 037851 519 IPDNIFIGTPKLKVLDFTRMRLLSLPSS-IHLLTDLRTLCLDGCELEDI--RVIGELKDLEILSLQGSKIEQLPRE-IGQ 594 (1053)
Q Consensus 519 ~~~~~~~~~~~Lr~L~l~~~~~~~lp~~-i~~l~~Lr~L~L~~~~~~~~--~~i~~l~~L~~L~l~~~~l~~lp~~-i~~ 594 (1053)
+|..+ .++|++|++++|.+..+|.. +..+++|++|++++|.+..+ ..++.+++|++|++++|.+..+|.. +++
T Consensus 22 ~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 98 (208)
T 2o6s_A 22 VPTGI---PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDK 98 (208)
T ss_dssp CCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCCC---CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcC
Confidence 55443 35788888888888877654 67888888888888888773 3467888888888888888877755 578
Q ss_pred cCCCCeeeccCcccccccCcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCCeEEEEecc
Q 037851 595 LTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLEINILD 667 (1053)
Q Consensus 595 L~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~ 667 (1053)
+++|++|++++ +.+..+++..+.++++|++|++++|.+. ......+..+++|+.|+++++.
T Consensus 99 l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~l~-----------~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 99 LTQLKELALNT-NQLQSLPDGVFDKLTQLKDLRLYQNQLK-----------SVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp CTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCS-----------CCCTTTTTTCTTCCEEECCSCC
T ss_pred ccCCCEEEcCC-CcCcccCHhHhccCCcCCEEECCCCccc-----------eeCHHHhccCCCccEEEecCCC
Confidence 88888888888 4677777776788888888888888762 2222346677888888877663
No 122
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.21 E-value=2.1e-10 Score=129.82 Aligned_cols=288 Identities=15% Similarity=0.138 Sum_probs=170.1
Q ss_pred cccccchHHHHHHHHHHhc----CCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCC-CCeEEEEEEcCCcCHHHHHHHHH
Q 037851 152 YEAFESRMSTLKSLQNALL----DPDVTITGVYGMGGLGKTTLVKEVARQVKKDKH-FDEVVFAEVSDTPDIKKVQGELA 226 (1053)
Q Consensus 152 ~~~~~gR~~~~~~l~~~l~----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-f~~~~wv~~s~~~~~~~~~~~i~ 226 (1053)
+..|+||+++++.+.+++. ....+.+.|+|++|+||||||+.+++....... -..++|+++....+...+...++
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~ 98 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLL 98 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHT
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHH
Confidence 3679999999999998886 345678999999999999999999998753211 23567888777777888888888
Q ss_pred HHhCCCCCCCC-ChhHHHHHHHHHHhc-CCcEEEEEcCCCCcc------chhhhcCCCCC-CCCCcEEEEEecChHHHHh
Q 037851 227 DQLGMQFDEES-DVPGRARKLYARLQK-ENKILIILDNIWEDL------DLEKVGVPSGN-DCRGCKVLLTARDRHVLES 297 (1053)
Q Consensus 227 ~~l~~~~~~~~-~~~~~~~~l~~~l~~-~~~~LlvlDdv~~~~------~~~~l~~~~~~-~~~gs~iivTtR~~~v~~~ 297 (1053)
.+++....... ........+.+.+.. +++.+||+||++... .+..+...+.. ...+..+|+||+.......
T Consensus 99 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~ 178 (386)
T 2qby_A 99 ESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDL 178 (386)
T ss_dssp TTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGG
T ss_pred HHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhh
Confidence 88765433222 222344555555543 458999999997532 22222211110 2235677888887643221
Q ss_pred --------hCCCcccccCCCHHHHHHHHHHHhCC-CCCCccchHHHHHHHHHhC---CCchHHHHH-HHHHh-----c--
Q 037851 298 --------IGSKTLRIDVLNDEEAWTLFKKMTGD-CAEKGELKSIATDVAKECG---GLPIAIVTL-AKALR-----N-- 357 (1053)
Q Consensus 298 --------~~~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~~~i~~~~~---GlPlai~~~-~~~L~-----~-- 357 (1053)
+....+.+.+++.++..+++.+.+.. .....-..++.+.|++.++ |.|..+..+ ..... .
T Consensus 179 ~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~ 258 (386)
T 2qby_A 179 LDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDT 258 (386)
T ss_dssp CTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCS
T ss_pred hCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCC
Confidence 11257999999999999999886531 1111223456777888887 999844333 32221 1
Q ss_pred CCCHHHHHHHHHHhcCCCCCchhhhHHHhhhhHHhhhcccChhhhHHHHHhcCC-C--CCCCchhHHHHHHH----HHhc
Q 037851 358 KTSVSTWKDALRQLKRPSHRNFEGVLAKTYSAIELSYKYLREEELKKLFLQCSL-M--GSPQASTLNLLKYA----IGLG 430 (1053)
Q Consensus 358 ~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~cfl~~s~-f--p~~~~~~~~li~~w----~a~g 430 (1053)
.-+.+.++.+++.. ....+.-++..+|++ .+..+..++. + ....+...++.+.. -..|
T Consensus 259 ~i~~~~v~~a~~~~--------------~~~~~~~~~~~l~~~-~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g 323 (386)
T 2qby_A 259 KVKEEYVYMAKEEI--------------ERDRVRDIILTLPFH-SKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLG 323 (386)
T ss_dssp SCCHHHHHHHHHHH--------------HHHHHHHHHHTSCHH-HHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHH--------------hhchHHHHHHcCCHH-HHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcC
Confidence 12445555554432 123455566778863 4554444442 2 11113343332221 1112
Q ss_pred cccCccCHHHHHHHHHHHHHHHHhhccccc
Q 037851 431 IVKGVGTVEEARDKVNTLVDQLRDACLLLD 460 (1053)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~ 460 (1053)
. .. .+ ...+..+++.|...+++..
T Consensus 324 ~-~~-~~----~~~~~~~l~~L~~~gli~~ 347 (386)
T 2qby_A 324 V-EA-VT----QRRVSDIINELDMVGILTA 347 (386)
T ss_dssp C-CC-CC----HHHHHHHHHHHHHHTSEEE
T ss_pred C-CC-CC----HHHHHHHHHHHHhCCCEEE
Confidence 1 11 11 1234457888888998854
No 123
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.21 E-value=8.6e-11 Score=137.51 Aligned_cols=137 Identities=26% Similarity=0.394 Sum_probs=101.4
Q ss_pred cceEEeeccCCCCCCCCCcccccCCCceeEEeecCccccCCCcccccCccCcEEEcCCcccCCccccCCCCCCcEEEccC
Q 037851 503 CSRISLYDNNINSPLKIPDNIFIGTPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDGCELEDIRVIGELKDLEILSLQG 582 (1053)
Q Consensus 503 ~~~l~l~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~~~~i~~l~~L~~L~l~~ 582 (1053)
.+.+.+.++.... +|..++ ++|++|++++|.+..+| ..+++|++|++++|.++.++.+++ +|++|++++
T Consensus 61 L~~L~Ls~n~L~~---lp~~l~---~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 61 FSELQLNRLNLSS---LPDNLP---PQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPELPA--SLKHLDVDN 129 (571)
T ss_dssp CSEEECCSSCCSC---CCSCCC---TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCCCCT--TCCEEECCS
T ss_pred ccEEEeCCCCCCc---cCHhHc---CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcchhhc--CCCEEECCC
Confidence 5677777666554 666653 67888888888888888 457888888888888877444555 888888888
Q ss_pred CCCcccchhhhccCCCCeeeccCcccccccCcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCCeEE
Q 037851 583 SKIEQLPREIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLE 662 (1053)
Q Consensus 583 ~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~ 662 (1053)
|.+..+|. .+++|++|++++ +.+..+|. .+++|++|++++|.+.. ... +. ++|+.|+
T Consensus 130 N~l~~lp~---~l~~L~~L~Ls~-N~l~~lp~----~l~~L~~L~Ls~N~L~~------------lp~-l~--~~L~~L~ 186 (571)
T 3cvr_A 130 NQLTMLPE---LPALLEYINADN-NQLTMLPE----LPTSLEVLSVRNNQLTF------------LPE-LP--ESLEALD 186 (571)
T ss_dssp SCCSCCCC---CCTTCCEEECCS-SCCSCCCC----CCTTCCEEECCSSCCSC------------CCC-CC--TTCCEEE
T ss_pred CcCCCCCC---cCccccEEeCCC-CccCcCCC----cCCCcCEEECCCCCCCC------------cch-hh--CCCCEEE
Confidence 88888886 678888888888 46777654 57888888888887621 111 33 6888888
Q ss_pred EEeccCCCCCC
Q 037851 663 INILDAGILPS 673 (1053)
Q Consensus 663 i~~~~~~~~~~ 673 (1053)
++++....+|.
T Consensus 187 Ls~N~L~~lp~ 197 (571)
T 3cvr_A 187 VSTNLLESLPA 197 (571)
T ss_dssp CCSSCCSSCCC
T ss_pred CcCCCCCchhh
Confidence 88877666655
No 124
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.21 E-value=7e-11 Score=120.64 Aligned_cols=128 Identities=28% Similarity=0.451 Sum_probs=112.2
Q ss_pred CcceEEeeccCCCCCCCCCcccccCCCceeEEeecCccccCCCcc-cccCccCcEEEcCCcccCCc--cccCCCCCCcEE
Q 037851 502 KCSRISLYDNNINSPLKIPDNIFIGTPKLKVLDFTRMRLLSLPSS-IHLLTDLRTLCLDGCELEDI--RVIGELKDLEIL 578 (1053)
Q Consensus 502 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~-i~~l~~Lr~L~L~~~~~~~~--~~i~~l~~L~~L 578 (1053)
..+.+.+..+.... ++...|.++++|++|++++|.+..+|.. +..+.+|++|++++|.+..+ ..++.+++|++|
T Consensus 29 ~l~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 105 (208)
T 2o6s_A 29 QTTYLDLETNSLKS---LPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKEL 105 (208)
T ss_dssp TCSEEECCSSCCCC---CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCcEEEcCCCccCc---CChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEE
Confidence 47788888776653 7777789999999999999999988764 68999999999999999883 447999999999
Q ss_pred EccCCCCcccchh-hhccCCCCeeeccCcccccccCcchhcCCccCceeecccccc
Q 037851 579 SLQGSKIEQLPRE-IGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSI 633 (1053)
Q Consensus 579 ~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 633 (1053)
++++|.+..+|.. +.++++|++|++++ +.+..+++..+.++++|++|++++|.+
T Consensus 106 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~ 160 (208)
T 2o6s_A 106 ALNTNQLQSLPDGVFDKLTQLKDLRLYQ-NQLKSVPDGVFDRLTSLQYIWLHDNPW 160 (208)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred EcCCCcCcccCHhHhccCCcCCEEECCC-CccceeCHHHhccCCCccEEEecCCCe
Confidence 9999999988765 68999999999999 578888887789999999999999875
No 125
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.21 E-value=4.1e-11 Score=133.86 Aligned_cols=103 Identities=25% Similarity=0.382 Sum_probs=52.9
Q ss_pred eeEEeecCccccCCCcc-cc-cCccCcEEEcCCcccCC--ccccCCCCCCcEEEccCCCCcccch-hhhccCCCCeeecc
Q 037851 530 LKVLDFTRMRLLSLPSS-IH-LLTDLRTLCLDGCELED--IRVIGELKDLEILSLQGSKIEQLPR-EIGQLTQLKLLDLS 604 (1053)
Q Consensus 530 Lr~L~l~~~~~~~lp~~-i~-~l~~Lr~L~L~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~ 604 (1053)
++.|++++|.+..+|.. +. .+.+|++|+|++|.+.. +..+..+++|++|+|++|.+..+|. .+..+++|++|+|+
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 120 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLY 120 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECC
Confidence 45555555555544332 33 55555555555555544 1345555555555555555554443 24555555555555
Q ss_pred CcccccccCcchhcCCccCceeecccccc
Q 037851 605 NCSKLKVIAPNVLSNLSQLEELYMANCSI 633 (1053)
Q Consensus 605 ~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 633 (1053)
+ +.+..+++..+.++++|++|++++|.+
T Consensus 121 ~-N~i~~~~~~~~~~l~~L~~L~L~~N~l 148 (361)
T 2xot_A 121 N-NHIVVVDRNAFEDMAQLQKLYLSQNQI 148 (361)
T ss_dssp S-SCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred C-CcccEECHHHhCCcccCCEEECCCCcC
Confidence 5 344444444455555555555555544
No 126
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.20 E-value=3.6e-12 Score=142.64 Aligned_cols=139 Identities=16% Similarity=0.218 Sum_probs=90.9
Q ss_pred cccccCCCceeEEeecCccccCCC-----cccccCc-cCcEEEcCCcccCC--ccccCCC-----CCCcEEEccCCCCcc
Q 037851 521 DNIFIGTPKLKVLDFTRMRLLSLP-----SSIHLLT-DLRTLCLDGCELED--IRVIGEL-----KDLEILSLQGSKIEQ 587 (1053)
Q Consensus 521 ~~~~~~~~~Lr~L~l~~~~~~~lp-----~~i~~l~-~Lr~L~L~~~~~~~--~~~i~~l-----~~L~~L~l~~~~l~~ 587 (1053)
+.++...++|+.|++++|.+...+ ..+..++ +|++|+|++|.+.. +..+..+ ++|++|++++|.+..
T Consensus 15 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~ 94 (362)
T 3goz_A 15 EEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSY 94 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG
T ss_pred HHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCCh
Confidence 344455566888888888887665 4567777 88888888888766 3445544 888888888888875
Q ss_pred cc-hh----hhcc-CCCCeeeccCcccccccCcchh----cC-CccCceeecccccccccccCCcccccCCChhhhcCCC
Q 037851 588 LP-RE----IGQL-TQLKLLDLSNCSKLKVIAPNVL----SN-LSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLS 656 (1053)
Q Consensus 588 lp-~~----i~~L-~~L~~L~l~~~~~l~~~~~~~l----~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~ 656 (1053)
.+ .. +..+ ++|++|++++| .+...++..+ .. .++|++|++++|.+.... .......+..++
T Consensus 95 ~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~-------~~~l~~~l~~~~ 166 (362)
T 3goz_A 95 KSSDELVKTLAAIPFTITVLDLGWN-DFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKS-------SDELIQILAAIP 166 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSC-------HHHHHHHHHTSC
T ss_pred HHHHHHHHHHHhCCCCccEEECcCC-cCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHH-------HHHHHHHHhcCC
Confidence 44 33 3444 78888888884 5666655443 33 258888888888762100 011223344554
Q ss_pred -CCCeEEEEecc
Q 037851 657 -RLTSLEINILD 667 (1053)
Q Consensus 657 -~L~~L~i~~~~ 667 (1053)
+|+.|+++++.
T Consensus 167 ~~L~~L~Ls~n~ 178 (362)
T 3goz_A 167 ANVNSLNLRGNN 178 (362)
T ss_dssp TTCCEEECTTSC
T ss_pred ccccEeeecCCC
Confidence 77777776554
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.20 E-value=7.1e-11 Score=118.57 Aligned_cols=112 Identities=18% Similarity=0.331 Sum_probs=95.2
Q ss_pred CCCcccccCCCceeEEeecCccccCCCcccccCccCcEEEcCCcccCCc--cccCCCCCCcEEEccCCCCcccch-hhhc
Q 037851 518 KIPDNIFIGTPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDGCELEDI--RVIGELKDLEILSLQGSKIEQLPR-EIGQ 594 (1053)
Q Consensus 518 ~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~~--~~i~~l~~L~~L~l~~~~l~~lp~-~i~~ 594 (1053)
.+|..++ +.|+.|++++|.+..+|..+..+.+|++|++++|.++.+ ..+..+++|++|+|++|.+..+|. .+..
T Consensus 24 ~ip~~~~---~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~ 100 (193)
T 2wfh_A 24 VLPKGIP---RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDG 100 (193)
T ss_dssp SCCSCCC---TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTT
T ss_pred cCCCCCC---CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCC
Confidence 3666543 578999999999999998899999999999999998873 568899999999999999988765 5888
Q ss_pred cCCCCeeeccCcccccccCcchhcCCccCceeecccccc
Q 037851 595 LTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSI 633 (1053)
Q Consensus 595 L~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 633 (1053)
+++|++|++++ +.+..+++..+..+++|+.|++.+|.+
T Consensus 101 l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 101 LKSLRLLSLHG-NDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCEEECCC-CCCCeeChhhhhcCccccEEEeCCCCe
Confidence 99999999998 578888887788899999999998876
No 128
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.19 E-value=6.2e-11 Score=119.04 Aligned_cols=111 Identities=23% Similarity=0.306 Sum_probs=72.6
Q ss_pred CCcccccCCCceeEEeecCccccCCCcc--cccCccCcEEEcCCcccCC--ccccCCCCCCcEEEccCCCCcccchh-hh
Q 037851 519 IPDNIFIGTPKLKVLDFTRMRLLSLPSS--IHLLTDLRTLCLDGCELED--IRVIGELKDLEILSLQGSKIEQLPRE-IG 593 (1053)
Q Consensus 519 ~~~~~~~~~~~Lr~L~l~~~~~~~lp~~--i~~l~~Lr~L~L~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~lp~~-i~ 593 (1053)
+|..++ ..|++|++++|.+..+|.. +..+++|++|+|++|.++. +..++.+++|++|+|++|.+..+|.. +.
T Consensus 23 ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 99 (192)
T 1w8a_A 23 IPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFL 99 (192)
T ss_dssp CCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSST
T ss_pred CccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhc
Confidence 555443 2667777777777666542 6677777777777777665 35666777777777777777655543 56
Q ss_pred ccCCCCeeeccCcccccccCcchhcCCccCceeecccccc
Q 037851 594 QLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSI 633 (1053)
Q Consensus 594 ~L~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 633 (1053)
.+++|++|++++ +.+..+++..+..+++|++|++++|.+
T Consensus 100 ~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 100 GLHQLKTLNLYD-NQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp TCTTCCEEECCS-SCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred CCCCCCEEECCC-CcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 677777777776 456666556666777777777776655
No 129
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.19 E-value=8.7e-10 Score=124.84 Aligned_cols=287 Identities=13% Similarity=0.117 Sum_probs=173.6
Q ss_pred ccccchHHHHHHHHHHhcC----CCee--EEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHH
Q 037851 153 EAFESRMSTLKSLQNALLD----PDVT--ITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELA 226 (1053)
Q Consensus 153 ~~~~gR~~~~~~l~~~l~~----~~~~--vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 226 (1053)
..++||+.+++++.+++.. .... .+.|+|++|+||||+|+.+++...... -..++|++++...+...+...++
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~l~ 95 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT-TARFVYINGFIYRNFTAIIGEIA 95 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC-CCEEEEEETTTCCSHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc-CeeEEEEeCccCCCHHHHHHHHH
Confidence 5689999999999888863 3334 899999999999999999999875321 13567888888888889999999
Q ss_pred HHhCCCCCCCC-ChhHHHHHHHHHHh-cCCcEEEEEcCCCCc--cchhhhcCCCCCC-C---CCcEEEEEecChHHHHh-
Q 037851 227 DQLGMQFDEES-DVPGRARKLYARLQ-KENKILIILDNIWED--LDLEKVGVPSGND-C---RGCKVLLTARDRHVLES- 297 (1053)
Q Consensus 227 ~~l~~~~~~~~-~~~~~~~~l~~~l~-~~~~~LlvlDdv~~~--~~~~~l~~~~~~~-~---~gs~iivTtR~~~v~~~- 297 (1053)
..++....... ........+...+. .+++.+|||||++.. .....+...+... . .+..||+||+.......
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l 175 (389)
T 1fnn_A 96 RSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNL 175 (389)
T ss_dssp HHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTS
T ss_pred HHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHh
Confidence 99876433222 23334444544443 356899999999764 2233332222111 1 36678888887654332
Q ss_pred -------hCCCcccccCCCHHHHHHHHHHHhCCC-CCCccchHHHHHHHHHh---------CCCchHHHHHHHHHh----
Q 037851 298 -------IGSKTLRIDVLNDEEAWTLFKKMTGDC-AEKGELKSIATDVAKEC---------GGLPIAIVTLAKALR---- 356 (1053)
Q Consensus 298 -------~~~~~~~l~~L~~~~~~~lf~~~~~~~-~~~~~~~~~~~~i~~~~---------~GlPlai~~~~~~L~---- 356 (1053)
+....+.+.+++.++..+++...+... ....--++..+.|++.+ +|.|..+..+.....
T Consensus 176 ~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~ 255 (389)
T 1fnn_A 176 DPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQ 255 (389)
T ss_dssp CHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHH
T ss_pred CHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHH
Confidence 223469999999999999998876320 01122346788899999 788755444433221
Q ss_pred --cC--CCHHHHHHHHHHhcCCCCCchhhhHHHhhhhHHhhhcccChhhhHHHHHhcCCCC---CC-CchhHHHHHHHHH
Q 037851 357 --NK--TSVSTWKDALRQLKRPSHRNFEGVLAKTYSAIELSYKYLREEELKKLFLQCSLMG---SP-QASTLNLLKYAIG 428 (1053)
Q Consensus 357 --~~--~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~cfl~~s~fp---~~-~~~~~~li~~w~a 428 (1053)
.. -+.+....+...... ..+.-.+..|++ +.+.++..++.+. .. .+....+...+..
T Consensus 256 ~~~~~~i~~~~v~~~~~~~~~--------------~~~~~~l~~l~~-~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~ 320 (389)
T 1fnn_A 256 QNGRKHIAPEDVRKSSKEVLF--------------GISEEVLIGLPL-HEKLFLLAIVRSLKISHTPYITFGDAEESYKI 320 (389)
T ss_dssp HTTCSSCCHHHHHHHHHHHSC--------------CCCHHHHHHSCH-HHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHH
T ss_pred HhCCCCcCHHHHHHHHHHHhh--------------hhHHHHHHcCCH-HHHHHHHHHHHHHhhccCCCccHHHHHHHHHH
Confidence 11 133333333333221 122334566776 3565555555332 01 3444444443321
Q ss_pred ----hccccCccCHHHHHHHHHHHHHHHHhhcccccC
Q 037851 429 ----LGIVKGVGTVEEARDKVNTLVDQLRDACLLLDG 461 (1053)
Q Consensus 429 ----~g~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~ 461 (1053)
.|.. . -+ ...+.+++++|...+++...
T Consensus 321 ~~~~~~~~-~-~~----~~~~~~~l~~L~~~gli~~~ 351 (389)
T 1fnn_A 321 VCEEYGER-P-RV----HSQLWSYLNDLREKGIVETR 351 (389)
T ss_dssp HHHHTTCC-C-CC----HHHHHHHHHHHHHTTSSEEE
T ss_pred HHHHcCCC-C-CC----HHHHHHHHHHHHhCCCeEEe
Confidence 2211 1 11 13355688999999998653
No 130
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.18 E-value=5.1e-11 Score=119.70 Aligned_cols=123 Identities=26% Similarity=0.378 Sum_probs=107.1
Q ss_pred eEEeecCccccCCCcccccCccCcEEEcCCcccCCc-c--ccCCCCCCcEEEccCCCCccc-chhhhccCCCCeeeccCc
Q 037851 531 KVLDFTRMRLLSLPSSIHLLTDLRTLCLDGCELEDI-R--VIGELKDLEILSLQGSKIEQL-PREIGQLTQLKLLDLSNC 606 (1053)
Q Consensus 531 r~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~~-~--~i~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~ 606 (1053)
++++++++.+..+|..+.. +|++|++++|.+..+ + .++.+++|++|+|++|.+..+ |..+..+++|++|++++
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~- 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE- 87 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS-
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC-
Confidence 6899999999999987654 999999999999883 3 389999999999999999977 67899999999999999
Q ss_pred ccccccCcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCCeEEEEecc
Q 037851 607 SKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLEINILD 667 (1053)
Q Consensus 607 ~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~ 667 (1053)
+.+..+++..+.++++|++|++++|.+. ......+..+++|+.|+++++.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~-----------~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQIS-----------CVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCC-----------EECTTSSTTCTTCCEEECTTCC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCC-----------eeCHHHhhcCCCCCEEEeCCCC
Confidence 5788888888999999999999999872 3335567888999999988765
No 131
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.17 E-value=4.2e-11 Score=133.77 Aligned_cols=150 Identities=20% Similarity=0.274 Sum_probs=122.4
Q ss_pred cceEEeeccCCCCCCCCCccccc-CCCceeEEeecCccccCCCc-ccccCccCcEEEcCCcccCCc--cccCCCCCCcEE
Q 037851 503 CSRISLYDNNINSPLKIPDNIFI-GTPKLKVLDFTRMRLLSLPS-SIHLLTDLRTLCLDGCELEDI--RVIGELKDLEIL 578 (1053)
Q Consensus 503 ~~~l~l~~~~~~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~lp~-~i~~l~~Lr~L~L~~~~~~~~--~~i~~l~~L~~L 578 (1053)
.+.+.+..+.+.. ++...|. ++++|+.|++++|.+..+|. .+..+.+|++|+|++|.+..+ ..+..+.+|++|
T Consensus 41 l~~L~Ls~N~l~~---l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 117 (361)
T 2xot_A 41 TALLDLSHNNLSR---LRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVL 117 (361)
T ss_dssp CSEEECCSSCCCE---ECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CCEEECCCCCCCc---cChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEE
Confidence 6778888776654 6677777 89999999999999998764 699999999999999999883 568999999999
Q ss_pred EccCCCCccc-chhhhccCCCCeeeccCcccccccCcchh---cCCccCceeecccccccccccCCcccccCCChhhhcC
Q 037851 579 SLQGSKIEQL-PREIGQLTQLKLLDLSNCSKLKVIAPNVL---SNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKN 654 (1053)
Q Consensus 579 ~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~~~~~l---~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~ 654 (1053)
+|++|.+..+ |..+..+++|++|+|++ +.+..+|+..+ .++++|+.|++++|.+. ......+..
T Consensus 118 ~L~~N~i~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~-----------~l~~~~~~~ 185 (361)
T 2xot_A 118 LLYNNHIVVVDRNAFEDMAQLQKLYLSQ-NQISRFPVELIKDGNKLPKLMLLDLSSNKLK-----------KLPLTDLQK 185 (361)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCS-SCCCSCCGGGTC----CTTCCEEECCSSCCC-----------CCCHHHHHH
T ss_pred ECCCCcccEECHHHhCCcccCCEEECCC-CcCCeeCHHHhcCcccCCcCCEEECCCCCCC-----------ccCHHHhhh
Confidence 9999999977 56789999999999999 57888887766 67999999999999872 233445666
Q ss_pred CCC--CCeEEEEecc
Q 037851 655 LSR--LTSLEINILD 667 (1053)
Q Consensus 655 l~~--L~~L~i~~~~ 667 (1053)
+++ |+.|++.++.
T Consensus 186 l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 186 LPAWVKNGLYLHNNP 200 (361)
T ss_dssp SCHHHHTTEECCSSC
T ss_pred ccHhhcceEEecCCC
Confidence 665 3677776654
No 132
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.17 E-value=1.6e-11 Score=137.37 Aligned_cols=100 Identities=16% Similarity=0.152 Sum_probs=70.9
Q ss_pred EeecCccccC-CCcccccCccCcEEEcCCcccCCc------cccCCCC-CCcEEEccCCCCccc-chhhhcc-----CCC
Q 037851 533 LDFTRMRLLS-LPSSIHLLTDLRTLCLDGCELEDI------RVIGELK-DLEILSLQGSKIEQL-PREIGQL-----TQL 598 (1053)
Q Consensus 533 L~l~~~~~~~-lp~~i~~l~~Lr~L~L~~~~~~~~------~~i~~l~-~L~~L~l~~~~l~~l-p~~i~~L-----~~L 598 (1053)
+.++++.+.. +|..+....+|++|++++|.+... ..+..++ +|++|++++|.+... +..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 5677777774 344455556688899988887762 5567777 888888888888754 5556665 888
Q ss_pred CeeeccCcccccccCcchh----cCC-ccCceeecccccc
Q 037851 599 KLLDLSNCSKLKVIAPNVL----SNL-SQLEELYMANCSI 633 (1053)
Q Consensus 599 ~~L~l~~~~~l~~~~~~~l----~~l-~~L~~L~l~~~~~ 633 (1053)
++|++++| .+...++..+ ..+ ++|++|++++|.+
T Consensus 83 ~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l 121 (362)
T 3goz_A 83 TSLNLSGN-FLSYKSSDELVKTLAAIPFTITVLDLGWNDF 121 (362)
T ss_dssp CEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSCG
T ss_pred cEEECcCC-cCChHHHHHHHHHHHhCCCCccEEECcCCcC
Confidence 88888884 5665555433 334 7888888888876
No 133
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.15 E-value=1.3e-10 Score=116.65 Aligned_cols=123 Identities=27% Similarity=0.394 Sum_probs=106.1
Q ss_pred eEEeecCccccCCCcccccCccCcEEEcCCcccCC-ccccCCCCCCcEEEccCCCCcccch-hhhccCCCCeeeccCccc
Q 037851 531 KVLDFTRMRLLSLPSSIHLLTDLRTLCLDGCELED-IRVIGELKDLEILSLQGSKIEQLPR-EIGQLTQLKLLDLSNCSK 608 (1053)
Q Consensus 531 r~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~-~~~i~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~ 608 (1053)
++++++++.+..+|..+. .+|++|++++|.+.. +..++.+++|++|++++|.+..+|. .+..+++|++|++++ +.
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~-N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY-NR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC-Cc
Confidence 578999999999998664 689999999999988 5789999999999999999998874 589999999999999 57
Q ss_pred ccccCcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCCeEEEEecc
Q 037851 609 LKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLEINILD 667 (1053)
Q Consensus 609 l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~ 667 (1053)
+..+++..+.++++|++|++++|.+. ......+..+++|+.|+++++.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~-----------~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDIS-----------VVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCC-----------BCCTTTTTTCTTCCEEECCSSC
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCC-----------eeChhhhhcCccccEEEeCCCC
Confidence 99998888999999999999999873 2223356788899999887764
No 134
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.14 E-value=7.4e-11 Score=115.83 Aligned_cols=128 Identities=25% Similarity=0.306 Sum_probs=108.3
Q ss_pred CcceEEeeccCCCCCCCCCcccccCCCceeEEeecCccccCCCcccccCccCcEEEcCCcccCC-c-cccCCCCCCcEEE
Q 037851 502 KCSRISLYDNNINSPLKIPDNIFIGTPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDGCELED-I-RVIGELKDLEILS 579 (1053)
Q Consensus 502 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~-~-~~i~~l~~L~~L~ 579 (1053)
..+.+.+..+.... ..+|.. +..+++|++|++++|.+..+ ..+..+++|++|++++|.+.. + ..++.+++|++|+
T Consensus 25 ~L~~L~l~~n~l~~-~~i~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 25 AVRELVLDNCKSND-GKIEGL-TAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp SCSEEECCSCBCBT-TBCSSC-CGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred cCCEEECCCCCCCh-hhHHHH-HHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 46788887766541 125544 67899999999999999988 779999999999999999987 4 4556699999999
Q ss_pred ccCCCCcccc--hhhhccCCCCeeeccCcccccccCc---chhcCCccCceeecccccc
Q 037851 580 LQGSKIEQLP--REIGQLTQLKLLDLSNCSKLKVIAP---NVLSNLSQLEELYMANCSI 633 (1053)
Q Consensus 580 l~~~~l~~lp--~~i~~L~~L~~L~l~~~~~l~~~~~---~~l~~l~~L~~L~l~~~~~ 633 (1053)
+++|.+..+| ..+..+++|++|++++| .+..+++ ..+..+++|++|++.+|..
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 9999999887 78999999999999994 6777776 5689999999999999876
No 135
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.12 E-value=6.3e-11 Score=105.73 Aligned_cols=65 Identities=12% Similarity=0.103 Sum_probs=54.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHHHHhhhhhHHHhh
Q 037851 29 NYKANLENLKKETEKLTDASDSMQKKVDDARRNG-EEINKRVESWLISADKIVAEADTLTGEEENA 93 (1053)
Q Consensus 29 ~~~~~~~~~~~~l~~l~~~l~~i~~~l~~a~~~~-~~~~~~~~~wl~~~~~~~~~~ed~ld~~~~~ 93 (1053)
+.+..+.+++++++.|+.+|..|++++.+|+++. +..+++++.|+++||+++||+||++|+|...
T Consensus 16 ~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~~ 81 (115)
T 3qfl_A 16 EEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLVQ 81 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556678888888888888999999998763 3578999999999999999999999998653
No 136
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.11 E-value=5.8e-10 Score=117.34 Aligned_cols=197 Identities=13% Similarity=0.139 Sum_probs=117.1
Q ss_pred CcccccchHHHHHHHHHHhcCCC-eeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHh
Q 037851 151 GYEAFESRMSTLKSLQNALLDPD-VTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQL 229 (1053)
Q Consensus 151 ~~~~~~gR~~~~~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 229 (1053)
....++||+..++.+..++..+. .+.+.|+|++|+||||+|+.+++.......+... .+. .... ...+....
T Consensus 21 ~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~---~~~---~~~~-~~~~~~~~ 93 (250)
T 1njg_A 21 TFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT---PCG---VCDN-CREIEQGR 93 (250)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSS---CCS---CSHH-HHHHHTTC
T ss_pred cHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC---CCc---ccHH-HHHHhccC
Confidence 34568999999999999887443 3588999999999999999999887532211000 000 0000 00000000
Q ss_pred CCC---CC-CCCChhHHHHHHHHHHh----cCCcEEEEEcCCCCc--cchhhhcCCCCCCCCCcEEEEEecChHHHH-h-
Q 037851 230 GMQ---FD-EESDVPGRARKLYARLQ----KENKILIILDNIWED--LDLEKVGVPSGNDCRGCKVLLTARDRHVLE-S- 297 (1053)
Q Consensus 230 ~~~---~~-~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtR~~~v~~-~- 297 (1053)
... .. ...........+.+.+. .+++.+||+||++.. ..+..+...+.....+.++|+||+...... .
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l 173 (250)
T 1njg_A 94 FVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTI 173 (250)
T ss_dssp CSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHH
T ss_pred CcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHH
Confidence 000 00 00000011122222211 256799999999753 344444433333345778999987654221 1
Q ss_pred hC-CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCchHHHHHHHHH
Q 037851 298 IG-SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPIAIVTLAKAL 355 (1053)
Q Consensus 298 ~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~L 355 (1053)
.. ...+++.+++.++..+++...+..... .--++..+.|++.|+|.|..+..+...+
T Consensus 174 ~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~-~~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 174 LSRCLQFHLKALDVEQIRHQLEHILNEEHI-AHEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp HTTSEEEECCCCCHHHHHHHHHHHHHHTTC-CBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhhhccCCCCCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 12 467899999999999999987742111 1124567899999999999988776554
No 137
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.11 E-value=8.2e-11 Score=112.86 Aligned_cols=124 Identities=26% Similarity=0.339 Sum_probs=103.6
Q ss_pred CcceEEeeccCCCCCCCCCcccccCCCceeEEeecCccccCCCcccccCccCcEEEcCCcccCC-c-cccCCCCCCcEEE
Q 037851 502 KCSRISLYDNNINSPLKIPDNIFIGTPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDGCELED-I-RVIGELKDLEILS 579 (1053)
Q Consensus 502 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~-~-~~i~~l~~L~~L~ 579 (1053)
..+.+.+.++.... ..+|. .+..+++|++|++++|.+..+ ..+..+++|++|++++|.+.. + ..++.+++|++|+
T Consensus 18 ~l~~L~l~~n~l~~-~~~~~-~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 18 DVKELVLDNSRSNE-GKLEG-LTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GCSEEECTTCBCBT-TBCCS-CCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred cCeEEEccCCcCCh-hHHHH-HHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 36777777666541 12554 467899999999999999988 778999999999999999987 4 5566799999999
Q ss_pred ccCCCCcccc--hhhhccCCCCeeeccCcccccccCc---chhcCCccCceeecc
Q 037851 580 LQGSKIEQLP--REIGQLTQLKLLDLSNCSKLKVIAP---NVLSNLSQLEELYMA 629 (1053)
Q Consensus 580 l~~~~l~~lp--~~i~~L~~L~~L~l~~~~~l~~~~~---~~l~~l~~L~~L~l~ 629 (1053)
+++|.+..+| ..++.+++|++|++++| .+..+++ ..++.+++|+.|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence 9999999875 78999999999999995 7888776 568899999999875
No 138
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.11 E-value=5.9e-10 Score=115.37 Aligned_cols=188 Identities=12% Similarity=0.087 Sum_probs=119.1
Q ss_pred CcccccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhC
Q 037851 151 GYEAFESRMSTLKSLQNALLDPDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLG 230 (1053)
Q Consensus 151 ~~~~~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 230 (1053)
....++||+..++++.+++.....+.+.|+|++|+|||++|+.+++.......-...+.++.+...+...+...+.....
T Consensus 15 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (226)
T 2chg_A 15 TLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFAR 94 (226)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHHHHHT
T ss_pred CHHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHHHHhc
Confidence 34578999999999999998666556999999999999999999988643221122344444444443333222222111
Q ss_pred CCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCcc--chhhhcCCCCCCCCCcEEEEEecChHHH-Hh-hC-CCcccc
Q 037851 231 MQFDEESDVPGRARKLYARLQKENKILIILDNIWEDL--DLEKVGVPSGNDCRGCKVLLTARDRHVL-ES-IG-SKTLRI 305 (1053)
Q Consensus 231 ~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~iivTtR~~~v~-~~-~~-~~~~~l 305 (1053)
... ...+++.+||+||++... ....+...+.....+.++|+||+..... .. .. ...+++
T Consensus 95 ~~~----------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~ 158 (226)
T 2chg_A 95 TAP----------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRF 158 (226)
T ss_dssp SCC----------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEEC
T ss_pred ccC----------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeec
Confidence 100 002578999999997652 2333332222234567889998865321 11 11 347899
Q ss_pred cCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCchHHHHHHHHH
Q 037851 306 DVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPIAIVTLAKAL 355 (1053)
Q Consensus 306 ~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~L 355 (1053)
.+++.++..+++.+.+..... .--++..+.|++.++|.|..+..+...+
T Consensus 159 ~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~l~~~~~g~~r~l~~~l~~~ 207 (226)
T 2chg_A 159 KPVPKEAMKKRLLEICEKEGV-KITEDGLEALIYISGGDFRKAINALQGA 207 (226)
T ss_dssp CCCCHHHHHHHHHHHHHHHTC-CBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 999999999999887742111 1124567889999999998655544433
No 139
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.08 E-value=2.3e-10 Score=134.72 Aligned_cols=101 Identities=24% Similarity=0.289 Sum_probs=61.5
Q ss_pred eeEEeecCccccCCCcccccCccCcEEEcCCcccCC-ccccCCCCCCcEEEccCCCCcccchhhhccCCCCeeeccCccc
Q 037851 530 LKVLDFTRMRLLSLPSSIHLLTDLRTLCLDGCELED-IRVIGELKDLEILSLQGSKIEQLPREIGQLTQLKLLDLSNCSK 608 (1053)
Q Consensus 530 Lr~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~ 608 (1053)
|++|++++|.++.+|. ++.+++|++|+|++|.+.. |..++.+++|++|+|++|.++.+| .+++|++|++|++++ +.
T Consensus 443 L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~-N~ 519 (567)
T 1dce_A 443 VRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCN-NR 519 (567)
T ss_dssp CSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCS-SC
T ss_pred ceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCC-CC
Confidence 5556666666666655 6666666666666666555 455666666666666666666666 566666666666666 34
Q ss_pred ccccC-cchhcCCccCceeecccccc
Q 037851 609 LKVIA-PNVLSNLSQLEELYMANCSI 633 (1053)
Q Consensus 609 l~~~~-~~~l~~l~~L~~L~l~~~~~ 633 (1053)
+..++ |..++++++|+.|++++|.+
T Consensus 520 l~~~~~p~~l~~l~~L~~L~L~~N~l 545 (567)
T 1dce_A 520 LQQSAAIQPLVSCPRLVLLNLQGNSL 545 (567)
T ss_dssp CCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred CCCCCCcHHHhcCCCCCEEEecCCcC
Confidence 55553 44456666666666666655
No 140
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.08 E-value=1.4e-10 Score=141.36 Aligned_cols=114 Identities=23% Similarity=0.388 Sum_probs=95.7
Q ss_pred CCcccccCCCceeEEeecCccccCCCcccccCccCcEEEcCCcccCC-ccccCCCCCCcEEEccCCCCcccchhhhccCC
Q 037851 519 IPDNIFIGTPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDGCELED-IRVIGELKDLEILSLQGSKIEQLPREIGQLTQ 597 (1053)
Q Consensus 519 ~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~ 597 (1053)
+++..|..++.|++|+|++|.+..+|..+..+.+|++|+|++|.++. |..+++|++|++|+|++|.+..+|..+++|++
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~ 294 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQ 294 (727)
T ss_dssp -------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTT
T ss_pred cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCC
Confidence 45666788999999999999999999888899999999999999887 67789999999999999999999999999999
Q ss_pred CCeeeccCcccccccCcchhcCCccCceeeccccccc
Q 037851 598 LKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIE 634 (1053)
Q Consensus 598 L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 634 (1053)
|++|+|++ +.+..+|.. +++|++|++|++++|.+.
T Consensus 295 L~~L~L~~-N~l~~lp~~-~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 295 LKYFYFFD-NMVTTLPWE-FGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp CSEEECCS-SCCCCCCSS-TTSCTTCCCEECTTSCCC
T ss_pred CCEEECCC-CCCCccChh-hhcCCCccEEeCCCCccC
Confidence 99999998 477888655 899999999999999874
No 141
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.05 E-value=8.9e-10 Score=109.07 Aligned_cols=105 Identities=29% Similarity=0.484 Sum_probs=80.1
Q ss_pred CceeEEeecCccccCCCc-ccccCccCcEEEcCCcccCCc--cccCCCCCCcEEEccCCCCcccchh-hhccCCCCeeec
Q 037851 528 PKLKVLDFTRMRLLSLPS-SIHLLTDLRTLCLDGCELEDI--RVIGELKDLEILSLQGSKIEQLPRE-IGQLTQLKLLDL 603 (1053)
Q Consensus 528 ~~Lr~L~l~~~~~~~lp~-~i~~l~~Lr~L~L~~~~~~~~--~~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l 603 (1053)
+.|+.|++++|.+..+|. .+..+.+|++|++++|.+..+ ..++.+++|++|++++|.+..+|.. +.++++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 577888888888877665 357788888888888887763 3467888888888888888877654 577888888888
Q ss_pred cCcccccccCcchhcCCccCceeecccccc
Q 037851 604 SNCSKLKVIAPNVLSNLSQLEELYMANCSI 633 (1053)
Q Consensus 604 ~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 633 (1053)
++ +.+..+++..+.++++|++|++++|.+
T Consensus 108 ~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 108 DT-NQLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp CS-SCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cC-CcceEeCHHHhcCCcccCEEEecCCCe
Confidence 87 467777776667788888888887765
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.03 E-value=7e-10 Score=109.10 Aligned_cols=100 Identities=30% Similarity=0.500 Sum_probs=87.2
Q ss_pred eEEeecCccccCCCcccccCccCcEEEcCCcccCC--ccccCCCCCCcEEEccCCCCcccchh-hhccCCCCeeeccCcc
Q 037851 531 KVLDFTRMRLLSLPSSIHLLTDLRTLCLDGCELED--IRVIGELKDLEILSLQGSKIEQLPRE-IGQLTQLKLLDLSNCS 607 (1053)
Q Consensus 531 r~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~ 607 (1053)
+.++++++.+..+|..+. .+|++|+|++|.+.. +..++.+++|++|+|++|.+..+|.. +.++++|++|++++ +
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~-N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND-N 91 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-S
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC-C
Confidence 678999999999988765 889999999999887 46789999999999999999999876 48899999999998 5
Q ss_pred cccccCcchhcCCccCceeecccccc
Q 037851 608 KLKVIAPNVLSNLSQLEELYMANCSI 633 (1053)
Q Consensus 608 ~l~~~~~~~l~~l~~L~~L~l~~~~~ 633 (1053)
.+..+++..+.++++|++|++++|.+
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred ccceeCHHHhccccCCCEEEeCCCCc
Confidence 78888887788999999999999876
No 143
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.03 E-value=1.1e-09 Score=108.47 Aligned_cols=125 Identities=25% Similarity=0.364 Sum_probs=104.7
Q ss_pred eeEEeecCccccCCCcccccCccCcEEEcCCcccCCc--cccCCCCCCcEEEccCCCCcccchh-hhccCCCCeeeccCc
Q 037851 530 LKVLDFTRMRLLSLPSSIHLLTDLRTLCLDGCELEDI--RVIGELKDLEILSLQGSKIEQLPRE-IGQLTQLKLLDLSNC 606 (1053)
Q Consensus 530 Lr~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~~--~~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~ 606 (1053)
.+.++++++.+..+|..+. .+|++|++++|.+..+ ..++.+++|++|++++|.+..+|.. +..+++|++|++++
T Consensus 9 ~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~- 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE- 85 (177)
T ss_dssp TTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-
T ss_pred CCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC-
Confidence 4678899999999987554 7999999999999873 4579999999999999999988865 58999999999999
Q ss_pred ccccccCcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCCeEEEEeccC
Q 037851 607 SKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLEINILDA 668 (1053)
Q Consensus 607 ~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~ 668 (1053)
+.+..+++..+.++++|++|++++|.+. ......+..+++|+.|+++++..
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~-----------~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLK-----------SVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCS-----------CCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCccccCHHHhhCCcccCEEECcCCcce-----------EeCHHHhcCCcccCEEEecCCCe
Confidence 5788888887899999999999999872 22223457789999999987753
No 144
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.03 E-value=4.2e-10 Score=111.24 Aligned_cols=126 Identities=19% Similarity=0.225 Sum_probs=104.5
Q ss_pred CcceEEeeccCCCCCCCCCcccccCCCceeEEeecCccccCCCcccccCccCcEEEcCCcccCC-ccc-cCCCCCCcEEE
Q 037851 502 KCSRISLYDNNINSPLKIPDNIFIGTPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDGCELED-IRV-IGELKDLEILS 579 (1053)
Q Consensus 502 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~-~~~-i~~l~~L~~L~ 579 (1053)
..+.+.+.++.... ++ .+....++|++|++++|.+..+ +.+..+++|++|++++|.+.. ++. ++.+++|++|+
T Consensus 20 ~L~~L~l~~n~l~~---i~-~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 20 RDRELDLRGYKIPV---IE-NLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp SCEEEECTTSCCCS---CC-CGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred CceEEEeeCCCCch---hH-HhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence 35677777766553 43 3444445999999999999988 578999999999999999988 434 48999999999
Q ss_pred ccCCCCcccch--hhhccCCCCeeeccCcccccccCcc---hhcCCccCceeecccccc
Q 037851 580 LQGSKIEQLPR--EIGQLTQLKLLDLSNCSKLKVIAPN---VLSNLSQLEELYMANCSI 633 (1053)
Q Consensus 580 l~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~~~~~---~l~~l~~L~~L~l~~~~~ 633 (1053)
+++|.+..+|. .+..+++|++|++++| .+..+|.. .+..+++|+.|++++|..
T Consensus 95 L~~N~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 95 LTNNSLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CCSCCCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CCCCcCCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 99999999997 8899999999999994 67777543 478999999999998875
No 145
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.02 E-value=7.5e-10 Score=108.50 Aligned_cols=101 Identities=28% Similarity=0.410 Sum_probs=88.5
Q ss_pred eeEEeecCccccCCCcccccCccCcEEEcCCcccCC--ccccCCCCCCcEEEccCCCCcccchh-hhccCCCCeeeccCc
Q 037851 530 LKVLDFTRMRLLSLPSSIHLLTDLRTLCLDGCELED--IRVIGELKDLEILSLQGSKIEQLPRE-IGQLTQLKLLDLSNC 606 (1053)
Q Consensus 530 Lr~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~ 606 (1053)
.+.++++++.+..+|..+. .+|++|+|++|.++. +..++.+++|++|+|++|.+..+|.. +..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~- 87 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND- 87 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC-
Confidence 4688999999999998764 889999999999887 46689999999999999999988876 48999999999999
Q ss_pred ccccccCcchhcCCccCceeecccccc
Q 037851 607 SKLKVIAPNVLSNLSQLEELYMANCSI 633 (1053)
Q Consensus 607 ~~l~~~~~~~l~~l~~L~~L~l~~~~~ 633 (1053)
+.+..+++..+.++++|++|++++|.+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 578888887789999999999999876
No 146
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.02 E-value=1.9e-09 Score=126.08 Aligned_cols=111 Identities=24% Similarity=0.354 Sum_probs=68.3
Q ss_pred cceEEeeccCCCCCCCCCcccccCCCceeEEeecCccccCCCcccccCccCcEEEcCCcccCCccccCCCCCCcEEEccC
Q 037851 503 CSRISLYDNNINSPLKIPDNIFIGTPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDGCELEDIRVIGELKDLEILSLQG 582 (1053)
Q Consensus 503 ~~~l~l~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~~~~i~~l~~L~~L~l~~ 582 (1053)
.+.+.+..|.+.. +| . .+++|++|++++|.+..+|. +.. +|++|++++|.++.++. .+++|++|++++
T Consensus 82 L~~L~Ls~N~l~~---ip-~---~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~ 149 (571)
T 3cvr_A 82 ITVLEITQNALIS---LP-E---LPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQLTMLPE--LPALLEYINADN 149 (571)
T ss_dssp CSEEECCSSCCSC---CC-C---CCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSCCSCCCC--CCTTCCEEECCS
T ss_pred CCEEECcCCCCcc---cc-c---ccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCcCCCCCC--cCccccEEeCCC
Confidence 5556665555442 44 2 35666677777776666666 444 66777777776666433 566677777777
Q ss_pred CCCcccchhhhccCCCCeeeccCcccccccCcchhcCCccCceeecccccc
Q 037851 583 SKIEQLPREIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSI 633 (1053)
Q Consensus 583 ~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 633 (1053)
|.++.+|. .+++|++|++++ +.+..+|. +. ++|+.|++++|.+
T Consensus 150 N~l~~lp~---~l~~L~~L~Ls~-N~L~~lp~--l~--~~L~~L~Ls~N~L 192 (571)
T 3cvr_A 150 NQLTMLPE---LPTSLEVLSVRN-NQLTFLPE--LP--ESLEALDVSTNLL 192 (571)
T ss_dssp SCCSCCCC---CCTTCCEEECCS-SCCSCCCC--CC--TTCCEEECCSSCC
T ss_pred CccCcCCC---cCCCcCEEECCC-CCCCCcch--hh--CCCCEEECcCCCC
Confidence 76666665 456677777766 34555544 43 6677777766655
No 147
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.99 E-value=9.7e-10 Score=129.45 Aligned_cols=120 Identities=19% Similarity=0.231 Sum_probs=103.3
Q ss_pred cceEEeeccCCCCCCCCCcccccCCCceeEEeecCccccCCCcccccCccCcEEEcCCcccCCccccCCCCCCcEEEccC
Q 037851 503 CSRISLYDNNINSPLKIPDNIFIGTPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDGCELEDIRVIGELKDLEILSLQG 582 (1053)
Q Consensus 503 ~~~l~l~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~~~~i~~l~~L~~L~l~~ 582 (1053)
.+.+.+..+.... +|. |.++++|+.|++++|.+..+|..++.+++|++|+|++|.++.++.++.+++|++|+|++
T Consensus 443 L~~L~Ls~n~l~~---lp~--~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 443 VRVLHLAHKDLTV---LCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCN 517 (567)
T ss_dssp CSEEECTTSCCSS---CCC--GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCS
T ss_pred ceEEEecCCCCCC---CcC--ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCC
Confidence 5667777766654 665 78899999999999999999999999999999999999999977999999999999999
Q ss_pred CCCccc--chhhhccCCCCeeeccCcccccccCcch---hcCCccCceeec
Q 037851 583 SKIEQL--PREIGQLTQLKLLDLSNCSKLKVIAPNV---LSNLSQLEELYM 628 (1053)
Q Consensus 583 ~~l~~l--p~~i~~L~~L~~L~l~~~~~l~~~~~~~---l~~l~~L~~L~l 628 (1053)
|.+..+ |..++.|++|++|++++ +.+...|+.. +..+++|+.|++
T Consensus 518 N~l~~~~~p~~l~~l~~L~~L~L~~-N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 518 NRLQQSAAIQPLVSCPRLVLLNLQG-NSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SCCCSSSTTGGGGGCTTCCEEECTT-SGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCcHHHhcCCCCCEEEecC-CcCCCCccHHHHHHHHCcccCccCC
Confidence 999988 89999999999999999 5677776532 234778888753
No 148
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.94 E-value=2.2e-11 Score=123.16 Aligned_cols=136 Identities=22% Similarity=0.269 Sum_probs=104.8
Q ss_pred cccCCCceeEEeecCccccCCCcccccCccCcEEEcCCcccCC-ccccCCCCCCcEEEccCCCCcccchhhhccCCCCee
Q 037851 523 IFIGTPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDGCELED-IRVIGELKDLEILSLQGSKIEQLPREIGQLTQLKLL 601 (1053)
Q Consensus 523 ~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L 601 (1053)
.|..+++|++|++++|.+..+| .+..+++|++|++++|.+.. +..++.+++|++|++++|.+..+| .++.+++|++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L 120 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVL 120 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEE
T ss_pred HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEE
Confidence 4678999999999999999988 78999999999999999887 556677799999999999999888 68999999999
Q ss_pred eccCcccccccCc-chhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCCeEE
Q 037851 602 DLSNCSKLKVIAP-NVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLE 662 (1053)
Q Consensus 602 ~l~~~~~l~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~ 662 (1053)
++++ +.+..+++ ..+.++++|++|++++|.+....... ..........+..+++|+.|+
T Consensus 121 ~l~~-N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~-~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 121 YMSN-NKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKEN-NATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp EESE-EECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTT-TTHHHHHHHHHHHCSSCSEEC
T ss_pred ECCC-CcCCchhHHHHHhcCCCCCEEEecCCccccccccc-cchHHHHHHHHHhCCCcEEEC
Confidence 9998 46776644 45889999999999998763211000 000001122367788888875
No 149
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.89 E-value=1.5e-09 Score=132.25 Aligned_cols=123 Identities=24% Similarity=0.226 Sum_probs=95.6
Q ss_pred eecCccccCCCcccccCccCcEEEcCCcccCC-ccccCCCCCCcEEEccCCCCcccchhhhccCCCCeeeccCccccccc
Q 037851 534 DFTRMRLLSLPSSIHLLTDLRTLCLDGCELED-IRVIGELKDLEILSLQGSKIEQLPREIGQLTQLKLLDLSNCSKLKVI 612 (1053)
Q Consensus 534 ~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~ 612 (1053)
+++.+.+...|..+..+.+|++|+|++|.+.. +..++++.+|++|+|++|.+..+|..+++|++|++|+|++ +.+..+
T Consensus 207 ~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~-N~l~~l 285 (727)
T 4b8c_D 207 DDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSH-NRLTSL 285 (727)
T ss_dssp ---------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTT-SCCSSC
T ss_pred cccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcC-CcCCcc
Confidence 34444455557789999999999999999888 5778899999999999999999999999999999999999 468888
Q ss_pred CcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCCeEEEEeccCCC
Q 037851 613 APNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLEINILDAGI 670 (1053)
Q Consensus 613 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~~~ 670 (1053)
| ..+++|++|++|++++|.+ ...+..++++++|+.|+++++....
T Consensus 286 p-~~~~~l~~L~~L~L~~N~l------------~~lp~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 286 P-AELGSCFQLKYFYFFDNMV------------TTLPWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp C-SSGGGGTTCSEEECCSSCC------------CCCCSSTTSCTTCCCEECTTSCCCS
T ss_pred C-hhhcCCCCCCEEECCCCCC------------CccChhhhcCCCccEEeCCCCccCC
Confidence 5 4589999999999999986 2345568899999999999887653
No 150
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.84 E-value=1.2e-08 Score=112.17 Aligned_cols=188 Identities=17% Similarity=0.126 Sum_probs=116.0
Q ss_pred CcccccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhC
Q 037851 151 GYEAFESRMSTLKSLQNALLDPDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLG 230 (1053)
Q Consensus 151 ~~~~~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 230 (1053)
....++||+..++.+.+++..+..+.+.|+|++|+||||+|+.+++..........+++++.+.......+ +++++.+.
T Consensus 19 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~ 97 (323)
T 1sxj_B 19 VLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVV-RNQIKHFA 97 (323)
T ss_dssp SGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHH-HTHHHHHH
T ss_pred CHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHH-HHHHHHHH
Confidence 34678999999999999998766556999999999999999999998642111112344444433332222 22222111
Q ss_pred CCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCc--cchhhhcCCCCCCCCCcEEEEEecChHH-HHhh-C-CCcccc
Q 037851 231 MQFDEESDVPGRARKLYARLQKENKILIILDNIWED--LDLEKVGVPSGNDCRGCKVLLTARDRHV-LESI-G-SKTLRI 305 (1053)
Q Consensus 231 ~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtR~~~v-~~~~-~-~~~~~l 305 (1053)
.... .+..+++.+||+||++.. ..+..+...+.....++++|+||+...- .... . ...+++
T Consensus 98 ~~~~--------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~ 163 (323)
T 1sxj_B 98 QKKL--------------HLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRY 163 (323)
T ss_dssp HBCC--------------CCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEEC
T ss_pred hccc--------------cCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEee
Confidence 0000 000246889999999764 2333333222223356788888876532 1111 1 457899
Q ss_pred cCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCchH-HHHHHHH
Q 037851 306 DVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPIA-IVTLAKA 354 (1053)
Q Consensus 306 ~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPla-i~~~~~~ 354 (1053)
.+++.++..+++...+..... .--++....|++.++|.|.. +..+...
T Consensus 164 ~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~l~~~~~G~~r~a~~~l~~~ 212 (323)
T 1sxj_B 164 SKLSDEDVLKRLLQIIKLEDV-KYTNDGLEAIIFTAEGDMRQAINNLQST 212 (323)
T ss_dssp CCCCHHHHHHHHHHHHHHHTC-CBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 999999999999887641111 11245678899999999954 4444443
No 151
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.83 E-value=1.9e-10 Score=116.19 Aligned_cols=125 Identities=22% Similarity=0.310 Sum_probs=102.7
Q ss_pred eeEEeecCc--cccCCCcccccCccCcEEEcCCcccCCccccCCCCCCcEEEccCCCCcccchhhhccCCCCeeeccCcc
Q 037851 530 LKVLDFTRM--RLLSLPSSIHLLTDLRTLCLDGCELEDIRVIGELKDLEILSLQGSKIEQLPREIGQLTQLKLLDLSNCS 607 (1053)
Q Consensus 530 Lr~L~l~~~--~~~~lp~~i~~l~~Lr~L~L~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~ 607 (1053)
|+.+.+++. .++.+|..+..+++|++|++++|.+..++.++.+++|++|++++|.+..+|..+..+++|++|++++|
T Consensus 25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N- 103 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN- 103 (198)
T ss_dssp CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE-
T ss_pred hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCC-
Confidence 344444443 44566668999999999999999998866999999999999999999999998899999999999994
Q ss_pred cccccCcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCCeEEEEecc
Q 037851 608 KLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLEINILD 667 (1053)
Q Consensus 608 ~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~ 667 (1053)
.+..+| .++++++|++|++++|.+. ....+..+..+++|+.|+++++.
T Consensus 104 ~l~~l~--~~~~l~~L~~L~l~~N~i~----------~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 104 QIASLS--GIEKLVNLRVLYMSNNKIT----------NWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp ECCCHH--HHHHHHHSSEEEESEEECC----------CHHHHHHHTTTTTCSEEEECSCH
T ss_pred cCCcCC--ccccCCCCCEEECCCCcCC----------chhHHHHHhcCCCCCEEEecCCc
Confidence 777774 3889999999999999872 11123568899999999998765
No 152
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.80 E-value=5.9e-08 Score=103.43 Aligned_cols=169 Identities=7% Similarity=0.046 Sum_probs=107.3
Q ss_pred cccchHHHHHHHHHHhc----CCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCC---C--CeEEEEEEcCCcCHHHHHHH
Q 037851 154 AFESRMSTLKSLQNALL----DPDVTITGVYGMGGLGKTTLVKEVARQVKKDKH---F--DEVVFAEVSDTPDIKKVQGE 224 (1053)
Q Consensus 154 ~~~gR~~~~~~l~~~l~----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~---f--~~~~wv~~s~~~~~~~~~~~ 224 (1053)
.+.||+++++++...|. .+..+.+.|+|++|+|||++|+.|++....... . -..+++++....+...++..
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~ 100 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEK 100 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHH
Confidence 36799999999987765 567789999999999999999999999864221 1 13567777777888999999
Q ss_pred HHHHhCCCCCCCCChhHHHHHHHHHH--hcCCcEEEEEcCCCCccchhhhcCCCCC-CCCCc--EEEEEecChH-----H
Q 037851 225 LADQLGMQFDEESDVPGRARKLYARL--QKENKILIILDNIWEDLDLEKVGVPSGN-DCRGC--KVLLTARDRH-----V 294 (1053)
Q Consensus 225 i~~~l~~~~~~~~~~~~~~~~l~~~l--~~~~~~LlvlDdv~~~~~~~~l~~~~~~-~~~gs--~iivTtR~~~-----v 294 (1053)
|++++.+..............+...+ ..+++++++||+++...+-+.+...+.+ ...++ -||.++...+ +
T Consensus 101 I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~L 180 (318)
T 3te6_A 101 IWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIREQI 180 (318)
T ss_dssp HHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHHH
T ss_pred HHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccchhhc
Confidence 99999654222222223344444443 2367899999999765321111111100 01122 3333443321 1
Q ss_pred ----HHhhCCCcccccCCCHHHHHHHHHHHhC
Q 037851 295 ----LESIGSKTLRIDVLNDEEAWTLFKKMTG 322 (1053)
Q Consensus 295 ----~~~~~~~~~~l~~L~~~~~~~lf~~~~~ 322 (1053)
...++...+.+.+++.+|-.+++++++.
T Consensus 181 ~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 181 NIMPSLKAHFTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp HTCHHHHTTEEEEECCCCCHHHHHHHHHHHHH
T ss_pred chhhhccCCceEEEeCCCCHHHHHHHHHHHHH
Confidence 1223335789999999999999988763
No 153
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.75 E-value=3.2e-08 Score=108.67 Aligned_cols=173 Identities=13% Similarity=0.108 Sum_probs=107.2
Q ss_pred cccccchHHHHHHHHHHhc-----CCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHH
Q 037851 152 YEAFESRMSTLKSLQNALL-----DPDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELA 226 (1053)
Q Consensus 152 ~~~~~gR~~~~~~l~~~l~-----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 226 (1053)
...++|++..++++.+++. ......+.|+|++|+|||++|+.+++... . ..++++.+......++.
T Consensus 11 ~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~--~---~~~~~~~~~~~~~~~l~---- 81 (324)
T 1hqc_A 11 LDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELG--V---NLRVTSGPAIEKPGDLA---- 81 (324)
T ss_dssp TTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHT--C---CEEEECTTTCCSHHHHH----
T ss_pred HHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhC--C---CEEEEeccccCChHHHH----
Confidence 4578999999888887764 23346788999999999999999998764 1 23344443332222221
Q ss_pred HHhCCCCCCCCChhHHHHHHHHHHhc--CCcEEEEEcCCCCcc--chhhhcCCCC--------C----------CCCCcE
Q 037851 227 DQLGMQFDEESDVPGRARKLYARLQK--ENKILIILDNIWEDL--DLEKVGVPSG--------N----------DCRGCK 284 (1053)
Q Consensus 227 ~~l~~~~~~~~~~~~~~~~l~~~l~~--~~~~LlvlDdv~~~~--~~~~l~~~~~--------~----------~~~gs~ 284 (1053)
..+.. .++.+|++||++... ....+...+. . ...+.+
T Consensus 82 ---------------------~~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (324)
T 1hqc_A 82 ---------------------AILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFT 140 (324)
T ss_dssp ---------------------HHHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCE
T ss_pred ---------------------HHHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEE
Confidence 11211 356688889987642 1111110000 0 012456
Q ss_pred EEEEecChHHHH-hh-C--CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCchHHHHHHHHH
Q 037851 285 VLLTARDRHVLE-SI-G--SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPIAIVTLAKAL 355 (1053)
Q Consensus 285 iivTtR~~~v~~-~~-~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~L 355 (1053)
+|.||....... .. . ...+.+.+++.+|...++.+.+..... .--++....|++.++|.|..+..+...+
T Consensus 141 ~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~-~~~~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 141 LIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGV-RITEEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp EEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTC-CCCHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred EEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 777776542111 11 1 257899999999999999887743211 1224668899999999998887766554
No 154
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.74 E-value=3.2e-08 Score=97.14 Aligned_cols=92 Identities=23% Similarity=0.361 Sum_probs=79.1
Q ss_pred CCCcccccCCCceeEEeecCccccCC-CcccccCccCcEEEcCCcccCCc--cccCCCCCCcEEEccCCCCcccchh-hh
Q 037851 518 KIPDNIFIGTPKLKVLDFTRMRLLSL-PSSIHLLTDLRTLCLDGCELEDI--RVIGELKDLEILSLQGSKIEQLPRE-IG 593 (1053)
Q Consensus 518 ~~~~~~~~~~~~Lr~L~l~~~~~~~l-p~~i~~l~~Lr~L~L~~~~~~~~--~~i~~l~~L~~L~l~~~~l~~lp~~-i~ 593 (1053)
.+|..++ +.|++|++++|.+..+ |..+..+++|++|+|++|.++.+ ..++.+++|++|+|++|.+..+|.. +.
T Consensus 26 ~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~ 102 (174)
T 2r9u_A 26 SVPAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFD 102 (174)
T ss_dssp SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred ccCCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhc
Confidence 3777653 7899999999999987 56799999999999999999883 3468999999999999999999876 89
Q ss_pred ccCCCCeeeccCcccccccC
Q 037851 594 QLTQLKLLDLSNCSKLKVIA 613 (1053)
Q Consensus 594 ~L~~L~~L~l~~~~~l~~~~ 613 (1053)
++++|++|++++| .+...+
T Consensus 103 ~l~~L~~L~L~~N-~~~c~~ 121 (174)
T 2r9u_A 103 NLKSLTHIYLYNN-PWDCEC 121 (174)
T ss_dssp TCTTCSEEECCSS-CBCTTB
T ss_pred cccCCCEEEeCCC-Cccccc
Confidence 9999999999994 555443
No 155
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.72 E-value=2.2e-08 Score=110.17 Aligned_cols=186 Identities=14% Similarity=0.101 Sum_probs=115.0
Q ss_pred cccccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhCC
Q 037851 152 YEAFESRMSTLKSLQNALLDPDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLGM 231 (1053)
Q Consensus 152 ~~~~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 231 (1053)
...++|++..++.+.+++..+..+.+.++|++|+||||+|+.+++.......-...+.++.+.......+ ...+.
T Consensus 24 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---- 98 (327)
T 1iqp_A 24 LDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVI-REKVK---- 98 (327)
T ss_dssp TTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTT-HHHHH----
T ss_pred HHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHHH-HHHHH----
Confidence 4568999999999999988666666999999999999999999998642111012333333321111111 11111
Q ss_pred CCCCCCChhHHHHHHHHH--HhcCCcEEEEEcCCCCc--cchhhhcCCCCCCCCCcEEEEEecChHHH-Hhh--CCCccc
Q 037851 232 QFDEESDVPGRARKLYAR--LQKENKILIILDNIWED--LDLEKVGVPSGNDCRGCKVLLTARDRHVL-ESI--GSKTLR 304 (1053)
Q Consensus 232 ~~~~~~~~~~~~~~l~~~--l~~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtR~~~v~-~~~--~~~~~~ 304 (1053)
..... +..+++.++|+||++.. ..+..+...+.....++++|+||....-. ... ....+.
T Consensus 99 -------------~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~ 165 (327)
T 1iqp_A 99 -------------EFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFR 165 (327)
T ss_dssp -------------HHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEE
T ss_pred -------------HHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEE
Confidence 00000 11256889999999764 23333433222233567888888765321 111 134789
Q ss_pred ccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCchHHHHHHHHHh
Q 037851 305 IDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPIAIVTLAKALR 356 (1053)
Q Consensus 305 l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~L~ 356 (1053)
+.+++.++...++.+.+..... .--++....|++.++|.|..+..+...+.
T Consensus 166 ~~~l~~~~~~~~l~~~~~~~~~-~~~~~~~~~l~~~~~g~~r~~~~~l~~~~ 216 (327)
T 1iqp_A 166 FRPLRDEDIAKRLRYIAENEGL-ELTEEGLQAILYIAEGDMRRAINILQAAA 216 (327)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTC-EECHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ecCCCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 9999999999999887642211 12245678899999999987665554443
No 156
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.72 E-value=3.4e-08 Score=96.63 Aligned_cols=99 Identities=25% Similarity=0.381 Sum_probs=81.4
Q ss_pred eEEeeccCCCCCCCCCcccccCCCceeEEeecCccccCC-CcccccCccCcEEEcCCcccCCc--cccCCCCCCcEEEcc
Q 037851 505 RISLYDNNINSPLKIPDNIFIGTPKLKVLDFTRMRLLSL-PSSIHLLTDLRTLCLDGCELEDI--RVIGELKDLEILSLQ 581 (1053)
Q Consensus 505 ~l~l~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~l-p~~i~~l~~Lr~L~L~~~~~~~~--~~i~~l~~L~~L~l~ 581 (1053)
.+.+..+... .+|..+ .+.|++|++++|.+..+ |..+..+.+|++|+|++|.++.+ ..+..+++|++|+|+
T Consensus 13 ~l~~s~n~l~---~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 13 TVDCSGKSLA---SVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp EEECTTSCCS---SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred EEEeCCCCcC---ccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 3444444433 367665 37899999999999988 56799999999999999999883 457899999999999
Q ss_pred CCCCcccchh-hhccCCCCeeeccCccccc
Q 037851 582 GSKIEQLPRE-IGQLTQLKLLDLSNCSKLK 610 (1053)
Q Consensus 582 ~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~ 610 (1053)
+|.+..+|.. +.++++|++|++++| .+.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N-~~~ 115 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNN-PWD 115 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSS-CBC
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCC-CCC
Confidence 9999999875 899999999999994 444
No 157
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.60 E-value=9e-08 Score=106.18 Aligned_cols=99 Identities=24% Similarity=0.267 Sum_probs=77.6
Q ss_pred EEeecCc-cccCCCcccccCccCcEEEcCC-cccCC-c-cccCCCCCCcEEEccCCCCcccch-hhhccCCCCeeeccCc
Q 037851 532 VLDFTRM-RLLSLPSSIHLLTDLRTLCLDG-CELED-I-RVIGELKDLEILSLQGSKIEQLPR-EIGQLTQLKLLDLSNC 606 (1053)
Q Consensus 532 ~L~l~~~-~~~~lp~~i~~l~~Lr~L~L~~-~~~~~-~-~~i~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~ 606 (1053)
.++.+++ .+..+|. +..+.+|++|+|++ |.+.. + ..|+.|.+|++|+|++|.+..+|. .+++|++|++|+|++
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~- 89 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF- 89 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS-
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC-
Confidence 3477777 7888888 88888888888886 78877 2 568888888888888888887754 568888888888888
Q ss_pred ccccccCcchhcCCccCceeecccccc
Q 037851 607 SKLKVIAPNVLSNLSQLEELYMANCSI 633 (1053)
Q Consensus 607 ~~l~~~~~~~l~~l~~L~~L~l~~~~~ 633 (1053)
+.+..+|+..+..+. |+.|++.+|.+
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~ 115 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPL 115 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCc
Confidence 578888777665555 88888888776
No 158
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.54 E-value=4.6e-07 Score=99.08 Aligned_cols=185 Identities=13% Similarity=0.113 Sum_probs=114.5
Q ss_pred CcccccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhC
Q 037851 151 GYEAFESRMSTLKSLQNALLDPDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLG 230 (1053)
Q Consensus 151 ~~~~~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 230 (1053)
....++|++..++.+.+++..++.+.+.++|++|+|||++|+.+++.......-...+.++.+......
T Consensus 15 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~----------- 83 (319)
T 2chq_A 15 TLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGID----------- 83 (319)
T ss_dssp SGGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTT-----------
T ss_pred CHHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChH-----------
Confidence 345689999999999998887666569999999999999999999886321100112334433321110
Q ss_pred CCCCCCCChhHHHHHHHHH--HhcCCcEEEEEcCCCCc--cchhhhcCCCCCCCCCcEEEEEecChH-HHHhh-C-CCcc
Q 037851 231 MQFDEESDVPGRARKLYAR--LQKENKILIILDNIWED--LDLEKVGVPSGNDCRGCKVLLTARDRH-VLESI-G-SKTL 303 (1053)
Q Consensus 231 ~~~~~~~~~~~~~~~l~~~--l~~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtR~~~-v~~~~-~-~~~~ 303 (1053)
............ +..+++.++|+||++.. .....+...+.....+.++|+||.... +.... . ...+
T Consensus 84 -------~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i 156 (319)
T 2chq_A 84 -------VVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVF 156 (319)
T ss_dssp -------TSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEE
T ss_pred -------HHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEE
Confidence 000111111100 11256889999999764 233444444433345678888887653 11111 1 4578
Q ss_pred cccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCchHHHHHHHH
Q 037851 304 RIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPIAIVTLAKA 354 (1053)
Q Consensus 304 ~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~~ 354 (1053)
++.+++.++...++.+.+..... .--++....|++.++|.+..+......
T Consensus 157 ~~~~~~~~~~~~~l~~~~~~~~~-~i~~~~l~~l~~~~~G~~r~~~~~l~~ 206 (319)
T 2chq_A 157 RFKPVPKEAMKKRLLEICEKEGV-KITEDGLEALIYISGGDFRKAINALQG 206 (319)
T ss_dssp ECCCCCHHHHHHHHHHHHHTTCC-CBCHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred EecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 99999999999999887643221 122456788999999999765544433
No 159
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.42 E-value=1.8e-07 Score=93.73 Aligned_cols=151 Identities=11% Similarity=0.146 Sum_probs=87.0
Q ss_pred cccccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcC-----CCCeEEEEEEcCCcCHHHHHHHHH
Q 037851 152 YEAFESRMSTLKSLQNALLDPDVTITGVYGMGGLGKTTLVKEVARQVKKDK-----HFDEVVFAEVSDTPDIKKVQGELA 226 (1053)
Q Consensus 152 ~~~~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-----~f~~~~wv~~s~~~~~~~~~~~i~ 226 (1053)
...++||+++++++.+++.....+.+.|+|++|+|||++|+.+++...... .....++++++. +.
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~---- 90 (195)
T 1jbk_A 21 LDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------LV---- 90 (195)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHH------HH----
T ss_pred ccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHH------Hh----
Confidence 346899999999999999876667889999999999999999999865311 112344444321 10
Q ss_pred HHhCCCCCCCCChhHHHHHHHHHH-hcCCcEEEEEcCCCCcc---------chhhhcCCCCCCCCCcEEEEEecChHHHH
Q 037851 227 DQLGMQFDEESDVPGRARKLYARL-QKENKILIILDNIWEDL---------DLEKVGVPSGNDCRGCKVLLTARDRHVLE 296 (1053)
Q Consensus 227 ~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~~LlvlDdv~~~~---------~~~~l~~~~~~~~~gs~iivTtR~~~v~~ 296 (1053)
.. .............+.+.+ ..+++.+||+||++... .+..+...+.. ..+..+|+||.......
T Consensus 91 ---~~-~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~-~~~~~~i~~~~~~~~~~ 165 (195)
T 1jbk_A 91 ---AG-AKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA-RGELHCVGATTLDEYRQ 165 (195)
T ss_dssp ---TT-TCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHH-TTSCCEEEEECHHHHHH
T ss_pred ---cc-CCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhc-cCCeEEEEeCCHHHHHH
Confidence 00 000000111222333333 24668899999997542 11111111111 12445777776654322
Q ss_pred h-------hC-CCcccccCCCHHHHHHHH
Q 037851 297 S-------IG-SKTLRIDVLNDEEAWTLF 317 (1053)
Q Consensus 297 ~-------~~-~~~~~l~~L~~~~~~~lf 317 (1053)
. .. ...+.+.+++.++..+++
T Consensus 166 ~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 166 YIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred HHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 1 11 235788888888876654
No 160
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.40 E-value=1.6e-06 Score=97.17 Aligned_cols=193 Identities=13% Similarity=0.138 Sum_probs=110.6
Q ss_pred cccccchHHHHHHHHHHhcCCC-eeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhC
Q 037851 152 YEAFESRMSTLKSLQNALLDPD-VTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLG 230 (1053)
Q Consensus 152 ~~~~~gR~~~~~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 230 (1053)
...++||+..++.+.+++..++ ...+.|+|+.|+||||+|+.+++.......+.. ..+... .....+...-.
T Consensus 15 ~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~---~~~~~~----~~~~~~~~~~~ 87 (373)
T 1jr3_A 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA---TPCGVC----DNCREIEQGRF 87 (373)
T ss_dssp TTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCS---SCCSSS----HHHHHHHTSCC
T ss_pred hhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCC---CCCccc----HHHHHHhccCC
Confidence 3468999999999998887543 357889999999999999999988653221100 000000 00111110000
Q ss_pred CC-----CCCCCChhHHHHHHHHHHh----cCCcEEEEEcCCCCc--cchhhhcCCCCCCCCCcEEEEEecChH-HHHh-
Q 037851 231 MQ-----FDEESDVPGRARKLYARLQ----KENKILIILDNIWED--LDLEKVGVPSGNDCRGCKVLLTARDRH-VLES- 297 (1053)
Q Consensus 231 ~~-----~~~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtR~~~-v~~~- 297 (1053)
.. ....... .....+.+.+. .+++.+||+||++.. .....+...+.....+..+|++|.... +...
T Consensus 88 ~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l 166 (373)
T 1jr3_A 88 VDLIEIDAASRTKV-EDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTI 166 (373)
T ss_dssp SSCEEEETTCSCCS-SCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHH
T ss_pred CceEEecccccCCH-HHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHH
Confidence 00 0000000 11223333332 256789999999754 233333322222234567777776543 1111
Q ss_pred hC-CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCchHHHHHHH
Q 037851 298 IG-SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPIAIVTLAK 353 (1053)
Q Consensus 298 ~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~ 353 (1053)
.. ...+++.+++.++..+++.+.+..... .--.+....|++.++|.|..+..+..
T Consensus 167 ~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~-~~~~~a~~~l~~~~~G~~r~~~~~l~ 222 (373)
T 1jr3_A 167 LSRCLQFHLKALDVEQIRHQLEHILNEEHI-AHEPRALQLLARAAEGSLRDALSLTD 222 (373)
T ss_dssp HTTSEEEECCCCCHHHHHHHHHHHHHHHTC-CBCHHHHHHHHHHSSSCHHHHHHHHH
T ss_pred HhheeEeeCCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 11 467899999999999999877631111 11235578899999999987766543
No 161
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.38 E-value=4e-06 Score=89.82 Aligned_cols=178 Identities=13% Similarity=0.150 Sum_probs=105.3
Q ss_pred CCcccccchHHHHHHHHHHhcC-------------CCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCc
Q 037851 150 KGYEAFESRMSTLKSLQNALLD-------------PDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTP 216 (1053)
Q Consensus 150 ~~~~~~~gR~~~~~~l~~~l~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 216 (1053)
.....++|.+..++++.+.+.. ...+.+.|+|++|+|||++|+.+++.... ..+.+..+.-.
T Consensus 14 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~-----~~~~v~~~~~~ 88 (285)
T 3h4m_A 14 VRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNA-----TFIRVVGSELV 88 (285)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTC-----EEEEEEGGGGC
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCC-----CEEEEehHHHH
Confidence 3456789999999988877631 34567999999999999999999987641 22333332211
Q ss_pred CHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCcc----------------chhhhcCCCC--C
Q 037851 217 DIKKVQGELADQLGMQFDEESDVPGRARKLYARLQKENKILIILDNIWEDL----------------DLEKVGVPSG--N 278 (1053)
Q Consensus 217 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~----------------~~~~l~~~~~--~ 278 (1053)
. . ...........+.......++.+|++||++... .+..+...+. .
T Consensus 89 ~--------------~--~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~ 152 (285)
T 3h4m_A 89 K--------------K--FIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFD 152 (285)
T ss_dssp C--------------C--STTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTC
T ss_pred H--------------h--ccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCC
Confidence 1 0 001111223334444444677899999996431 1111111111 1
Q ss_pred CCCCcEEEEEecChHHHHh-----hC-CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCC-chHHHH
Q 037851 279 DCRGCKVLLTARDRHVLES-----IG-SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGL-PIAIVT 350 (1053)
Q Consensus 279 ~~~gs~iivTtR~~~v~~~-----~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~Gl-Plai~~ 350 (1053)
...+..||.||...+.... .. ...+.+...+.++..++++..+.......+ .....+++.+.|. |-.+..
T Consensus 153 ~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~--~~~~~l~~~~~g~~~~~i~~ 229 (285)
T 3h4m_A 153 ARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAED--VNLEEIAKMTEGCVGAELKA 229 (285)
T ss_dssp SSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTT--CCHHHHHHHCTTCCHHHHHH
T ss_pred CCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCc--CCHHHHHHHcCCCCHHHHHH
Confidence 2235678888875532221 12 347899999999999999988763222111 1256678888774 434443
No 162
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.35 E-value=2.2e-06 Score=93.91 Aligned_cols=264 Identities=15% Similarity=0.113 Sum_probs=142.4
Q ss_pred CCceeEEeecCccccCCCcccccCccCcEEEcCCcccCCccccCC--------CCCCcEEEccCCCCcccch-hhhccCC
Q 037851 527 TPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDGCELEDIRVIGE--------LKDLEILSLQGSKIEQLPR-EIGQLTQ 597 (1053)
Q Consensus 527 ~~~Lr~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~~~~i~~--------l~~L~~L~l~~~~l~~lp~-~i~~L~~ 597 (1053)
+++|++||+++|.+......-+.+..++++.+..+.+.. ..|.+ +.+|+.|+|.. .++.++. .+..|++
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~-~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~ 125 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPA-YAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDN 125 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECT-TTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTT
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCH-HHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcc
Confidence 567777777777776211111222234555555553321 34455 88888888888 7777765 4678888
Q ss_pred CCeeeccCcccccccCcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCC-eEEEEeccCCCCCCcc-
Q 037851 598 LKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLT-SLEINILDAGILPSGF- 675 (1053)
Q Consensus 598 L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~-~L~i~~~~~~~~~~~~- 675 (1053)
|+.|+++. +.+..+++..+..+.++..+........... ....-..+.++.+|+ .+.+. ....++..+
T Consensus 126 L~~l~l~~-n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~-------~~i~~~~f~~~~~L~~~i~~~--~~~~l~~~~~ 195 (329)
T 3sb4_A 126 LKICQIRK-KTAPNLLPEALADSVTAIFIPLGSSDAYRFK-------NRWEHFAFIEGEPLETTIQVG--AMGKLEDEIM 195 (329)
T ss_dssp CCEEEBCC-SSCCEECTTSSCTTTCEEEECTTCTHHHHTS-------TTTTTSCEEESCCCEEEEEEC--TTCCHHHHHH
T ss_pred cceEEcCC-CCccccchhhhcCCCceEEecCcchhhhhcc-------ccccccccccccccceeEEec--CCCcHHHHHh
Confidence 88888887 4566777777777777776665432110000 000011122333443 22221 111111111
Q ss_pred ----ccccCceEEEEEcccCCCCCcccccceeeeccCCcccccccc-ccCccceeeccccCCcccccccccccccccccE
Q 037851 676 ----FSRKLKRYRIVVGFQWAPFDKYKTRRTLKLKLNSRICLEEWR-GMKNVEYLRLDELPGLTNVLHDLDGEGFAELKH 750 (1053)
Q Consensus 676 ----~~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~-~l~~L~~L~L~~~~~~~~~~~~l~~~~l~~L~~ 750 (1053)
...++..+.+..... ........ .+++|+.|+|.++. ++. ++.-...++++|+.
T Consensus 196 ~~~~~~~~~~~l~~~~~l~-------------------~~~~~~l~~~~~~L~~l~L~~n~-i~~-I~~~aF~~~~~L~~ 254 (329)
T 3sb4_A 196 KAGLQPRDINFLTIEGKLD-------------------NADFKLIRDYMPNLVSLDISKTN-ATT-IPDFTFAQKKYLLK 254 (329)
T ss_dssp HTTCCGGGCSEEEEEECCC-------------------HHHHHHHHHHCTTCCEEECTTBC-CCE-ECTTTTTTCTTCCE
T ss_pred hcccCccccceEEEeeeec-------------------HHHHHHHHHhcCCCeEEECCCCC-cce-ecHhhhhCCCCCCE
Confidence 123444444321100 00000001 36788888888643 222 22222356788999
Q ss_pred EEeecCCCceeecCCcccccCcCCccc-eeecccccccccccccccCccccCCccEEeEccCCCccccCCchhhhccCCc
Q 037851 751 LNVKNNSNFLCIVDPLQVRCGAFPMLE-SLVLQNLINLERICHGQLRAESFCNLKTIKVGSCHKLKNLFSFSIAKFLPQL 829 (1053)
Q Consensus 751 L~l~~~~~l~~i~~~~~~~~~~~p~L~-~L~l~~~~~L~~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L 829 (1053)
|.+.++ ++.+.... ...+++|+ .+.+.+ +++.+....| ..+++|+.|++.+. +++.++. ..+.++++|
T Consensus 255 l~l~~n--i~~I~~~a---F~~~~~L~~~l~l~~--~l~~I~~~aF--~~c~~L~~l~l~~n-~i~~I~~-~aF~~~~~L 323 (329)
T 3sb4_A 255 IKLPHN--LKTIGQRV---FSNCGRLAGTLELPA--SVTAIEFGAF--MGCDNLRYVLATGD-KITTLGD-ELFGNGVPS 323 (329)
T ss_dssp EECCTT--CCEECTTT---TTTCTTCCEEEEECT--TCCEECTTTT--TTCTTEEEEEECSS-CCCEECT-TTTCTTCCC
T ss_pred EECCcc--cceehHHH---hhCChhccEEEEEcc--cceEEchhhh--hCCccCCEEEeCCC-ccCccch-hhhcCCcch
Confidence 988775 55554322 34567788 888876 5666643333 45788899887553 5777754 456788899
Q ss_pred cEEEe
Q 037851 830 KTIEV 834 (1053)
Q Consensus 830 ~~L~l 834 (1053)
+.++.
T Consensus 324 ~~ly~ 328 (329)
T 3sb4_A 324 KLIYK 328 (329)
T ss_dssp CEEEC
T ss_pred hhhcc
Confidence 88763
No 163
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.30 E-value=1.1e-06 Score=97.35 Aligned_cols=90 Identities=23% Similarity=0.180 Sum_probs=78.0
Q ss_pred CCCcccccCCCceeEEeecC-ccccCCC-cccccCccCcEEEcCCcccCC--ccccCCCCCCcEEEccCCCCcccchhhh
Q 037851 518 KIPDNIFIGTPKLKVLDFTR-MRLLSLP-SSIHLLTDLRTLCLDGCELED--IRVIGELKDLEILSLQGSKIEQLPREIG 593 (1053)
Q Consensus 518 ~~~~~~~~~~~~Lr~L~l~~-~~~~~lp-~~i~~l~~Lr~L~L~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~lp~~i~ 593 (1053)
.+|. +..+.+|+.|+|++ |.+..+| ..|..|.+|++|+|++|.++. +..|++|++|++|+|++|.+..+|..+.
T Consensus 23 ~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 100 (347)
T 2ifg_A 23 SLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTV 100 (347)
T ss_dssp TTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTT
T ss_pred ccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHc
Confidence 3777 68899999999996 9999887 479999999999999999988 4578999999999999999999998765
Q ss_pred ccCCCCeeeccCccccc
Q 037851 594 QLTQLKLLDLSNCSKLK 610 (1053)
Q Consensus 594 ~L~~L~~L~l~~~~~l~ 610 (1053)
....|++|++.+| .+.
T Consensus 101 ~~~~L~~l~l~~N-~~~ 116 (347)
T 2ifg_A 101 QGLSLQELVLSGN-PLH 116 (347)
T ss_dssp CSCCCCEEECCSS-CCC
T ss_pred ccCCceEEEeeCC-Ccc
Confidence 5555999999984 443
No 164
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.29 E-value=2.3e-06 Score=93.80 Aligned_cols=64 Identities=8% Similarity=0.143 Sum_probs=47.4
Q ss_pred CCCcccccC--------CCceeEEeecCccccCCCc-ccccCccCcEEEcCCcccCC--ccccCCCCCCcEEEccC
Q 037851 518 KIPDNIFIG--------TPKLKVLDFTRMRLLSLPS-SIHLLTDLRTLCLDGCELED--IRVIGELKDLEILSLQG 582 (1053)
Q Consensus 518 ~~~~~~~~~--------~~~Lr~L~l~~~~~~~lp~-~i~~l~~Lr~L~L~~~~~~~--~~~i~~l~~L~~L~l~~ 582 (1053)
.+|+..|.+ +++|+.|++.+ .++.+++ +|..+.+|+.|++.+|.+.. ...|..+.++.++.+..
T Consensus 83 ~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~ 157 (329)
T 3sb4_A 83 FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGS 157 (329)
T ss_dssp EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTC
T ss_pred ccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcc
Confidence 367777778 88899998888 7777755 58888889999998887655 35666677777776655
No 165
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.29 E-value=5.2e-07 Score=94.16 Aligned_cols=173 Identities=11% Similarity=0.112 Sum_probs=103.4
Q ss_pred cccccch---HHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHH
Q 037851 152 YEAFESR---MSTLKSLQNALLDPDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQ 228 (1053)
Q Consensus 152 ~~~~~gR---~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 228 (1053)
...|+|+ +..++.+..+...+..+.+.|+|++|+||||+|+.+++..... ...+.|++++...+. +.
T Consensus 27 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~--~~~~~~~~~~~~~~~------~~-- 96 (242)
T 3bos_A 27 FTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANEL--ERRSFYIPLGIHASI------ST-- 96 (242)
T ss_dssp TTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEGGGGGGS------CG--
T ss_pred hhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEHHHHHHH------HH--
Confidence 3456653 3556666666655566889999999999999999999987643 234567766542110 00
Q ss_pred hCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCccc----hhhhcCCCCC--CCCCcEEEEEecChH---------
Q 037851 229 LGMQFDEESDVPGRARKLYARLQKENKILIILDNIWEDLD----LEKVGVPSGN--DCRGCKVLLTARDRH--------- 293 (1053)
Q Consensus 229 l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~----~~~l~~~~~~--~~~gs~iivTtR~~~--------- 293 (1053)
. ..+.+ .++.+||+||++.... ...+...+.. .....++|+||+...
T Consensus 97 ------------~----~~~~~--~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~ 158 (242)
T 3bos_A 97 ------------A----LLEGL--EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPD 158 (242)
T ss_dssp ------------G----GGTTG--GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHH
T ss_pred ------------H----HHHhc--cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhh
Confidence 0 00111 3467899999975421 1222111100 011225788776332
Q ss_pred HHHhhC-CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCchHHHHHHH
Q 037851 294 VLESIG-SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPIAIVTLAK 353 (1053)
Q Consensus 294 v~~~~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~~ 353 (1053)
+...+. ...+++.+++.++..+++.+.+.... ..--++....|++.++|.+-.+..+..
T Consensus 159 l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~l~~~~~g~~r~l~~~l~ 218 (242)
T 3bos_A 159 LVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRG-LQLPEDVGRFLLNRMARDLRTLFDVLD 218 (242)
T ss_dssp HHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTT-CCCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred hhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHccCCHHHHHHHHH
Confidence 222222 36889999999999999988764111 112246678899999998866654433
No 166
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.28 E-value=3.1e-05 Score=86.72 Aligned_cols=107 Identities=19% Similarity=0.247 Sum_probs=80.0
Q ss_pred CCcccccCCCceeEEeecCccccCCCc-ccccCccCcEEEcCCcccCC--ccccCCCCCCcEEEccCCCCcccchhhhcc
Q 037851 519 IPDNIFIGTPKLKVLDFTRMRLLSLPS-SIHLLTDLRTLCLDGCELED--IRVIGELKDLEILSLQGSKIEQLPREIGQL 595 (1053)
Q Consensus 519 ~~~~~~~~~~~Lr~L~l~~~~~~~lp~-~i~~l~~Lr~L~L~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L 595 (1053)
++...|.++ +|+.+.+..+ +..+++ +|.+ .+|+.+.+.. .+.. ...+.++.+|+.+++..|.+..+|......
T Consensus 127 I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~ 202 (401)
T 4fdw_A 127 IPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVY 202 (401)
T ss_dssp ECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTT
T ss_pred ehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEee
Confidence 556667765 6888888765 666654 4555 4688888875 4444 367888889999999888888888776667
Q ss_pred CCCCeeeccCcccccccCcchhcCCccCceeecccc
Q 037851 596 TQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANC 631 (1053)
Q Consensus 596 ~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 631 (1053)
.+|+.+.+.. .+..++...+.++++|+.+.+..+
T Consensus 203 ~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~~~ 236 (401)
T 4fdw_A 203 AGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIPEN 236 (401)
T ss_dssp CCCSEEECCT--TCCEECTTTTTTCTTCCCEECCTT
T ss_pred cccCEEEeCC--chheehhhHhhCCCCCCEEecCCC
Confidence 8899888875 477787788888888888887653
No 167
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.23 E-value=1.3e-05 Score=84.98 Aligned_cols=192 Identities=14% Similarity=0.138 Sum_probs=101.5
Q ss_pred cccchHHHHHHHHH-------Hhc---CCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHH
Q 037851 154 AFESRMSTLKSLQN-------ALL---DPDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQG 223 (1053)
Q Consensus 154 ~~~gR~~~~~~l~~-------~l~---~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 223 (1053)
.++|+...+++++. .+. ....+.+.|+|++|+|||++|+.+++... .. .+.+..+...
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~--~~---~~~i~~~~~~------- 101 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESN--FP---FIKICSPDKM------- 101 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHT--CS---EEEEECGGGC-------
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhC--CC---EEEEeCHHHh-------
Confidence 35565555444443 332 44567899999999999999999999753 11 2223322210
Q ss_pred HHHHHhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCc-----------cc-hhhh---cCCCCCCCCCcEEEEE
Q 037851 224 ELADQLGMQFDEESDVPGRARKLYARLQKENKILIILDNIWED-----------LD-LEKV---GVPSGNDCRGCKVLLT 288 (1053)
Q Consensus 224 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~-----------~~-~~~l---~~~~~~~~~gs~iivT 288 (1053)
.+. ...........+.+.....+..+|++||++.. .. ...+ ............||.|
T Consensus 102 -----~g~---~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~t 173 (272)
T 1d2n_A 102 -----IGF---SETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGT 173 (272)
T ss_dssp -----TTC---CHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEE
T ss_pred -----cCC---chHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEe
Confidence 000 00000011222333333366889999998642 11 1222 1211112234457788
Q ss_pred ecChHHHHhh---C--CCcccccCCCH-HHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCC------chHHHHHHHHHh
Q 037851 289 ARDRHVLESI---G--SKTLRIDVLND-EEAWTLFKKMTGDCAEKGELKSIATDVAKECGGL------PIAIVTLAKALR 356 (1053)
Q Consensus 289 tR~~~v~~~~---~--~~~~~l~~L~~-~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~Gl------Plai~~~~~~L~ 356 (1053)
|...+..... + ...+.+.+++. ++...++.+... . ..+....|++.+.|. +-++..+-....
T Consensus 174 tn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~~--~----~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~ 247 (272)
T 1d2n_A 174 TSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLGN--F----KDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQ 247 (272)
T ss_dssp ESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHTC--S----CHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTT
T ss_pred cCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcCC--C----CHHHHHHHHHHhcCCCccccHHHHHHHHHHHhh
Confidence 8877655432 1 35678888988 666666665321 1 135577888888884 333333333222
Q ss_pred cCCCHHHHHHHHHHhc
Q 037851 357 NKTSVSTWKDALRQLK 372 (1053)
Q Consensus 357 ~~~~~~~w~~~l~~l~ 372 (1053)
......+..+++.+.
T Consensus 248 -~~~~~~~~~~~~~l~ 262 (272)
T 1d2n_A 248 -MDPEYRVRKFLALLR 262 (272)
T ss_dssp -SCGGGHHHHHHHHHH
T ss_pred -hchHHHHHHHHHHHH
Confidence 223455565555443
No 168
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.23 E-value=3.7e-06 Score=93.32 Aligned_cols=195 Identities=12% Similarity=0.131 Sum_probs=112.6
Q ss_pred CcccccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCC-CeEEEEEEcCCcCHHHHHHHHHHHh
Q 037851 151 GYEAFESRMSTLKSLQNALLDPDVTITGVYGMGGLGKTTLVKEVARQVKKDKHF-DEVVFAEVSDTPDIKKVQGELADQL 229 (1053)
Q Consensus 151 ~~~~~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f-~~~~wv~~s~~~~~~~~~~~i~~~l 229 (1053)
....++|+++.++.+..++..+..+.+.++|++|+||||+|+.+++.......+ ..++.++.+.......+...+....
T Consensus 35 ~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (353)
T 1sxj_D 35 NLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNFA 114 (353)
T ss_dssp STTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTTHHHHHH
T ss_pred CHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHHHHHHHHHh
Confidence 345688999999999999986655558999999999999999999885421111 1233344444333333222111111
Q ss_pred CCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCcc--chhhhcCCCCCCCCCcEEEEEecChH-HHHhhC--CCccc
Q 037851 230 GMQFDEESDVPGRARKLYARLQKENKILIILDNIWEDL--DLEKVGVPSGNDCRGCKVLLTARDRH-VLESIG--SKTLR 304 (1053)
Q Consensus 230 ~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~iivTtR~~~-v~~~~~--~~~~~ 304 (1053)
.......... . ......+++-+|++|+++... ....+...+.......++|++|.... +..... ...+.
T Consensus 115 ~~~~~~~~~~--~----~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~ 188 (353)
T 1sxj_D 115 RLTVSKPSKH--D----LENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFR 188 (353)
T ss_dssp HSCCCCCCTT--H----HHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEE
T ss_pred hhcccccchh--h----cccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceEE
Confidence 1100000000 0 001112456799999986542 22333222222224567777775543 111111 35789
Q ss_pred ccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCchHHHHHH
Q 037851 305 IDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPIAIVTLA 352 (1053)
Q Consensus 305 l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~ 352 (1053)
+.+++.++....+.+.+..... .--++..+.|++.++|.|..+..+.
T Consensus 189 ~~~~~~~~~~~~l~~~~~~~~~-~i~~~~l~~l~~~~~G~~r~~~~~l 235 (353)
T 1sxj_D 189 FKALDASNAIDRLRFISEQENV-KCDDGVLERILDISAGDLRRGITLL 235 (353)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTC-CCCHHHHHHHHHHTSSCHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 9999999999999887642211 1124678899999999998654443
No 169
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.21 E-value=1.1e-05 Score=93.86 Aligned_cols=193 Identities=12% Similarity=0.126 Sum_probs=109.0
Q ss_pred CCcccccchHHHHHHHHHHhcC-----------------CCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEE
Q 037851 150 KGYEAFESRMSTLKSLQNALLD-----------------PDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEV 212 (1053)
Q Consensus 150 ~~~~~~~gR~~~~~~l~~~l~~-----------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 212 (1053)
.....++|++..++++.+++.. +..+.+.|+|++|+||||+|+.+++... + .++.+++
T Consensus 36 ~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~----~-~~i~in~ 110 (516)
T 1sxj_A 36 TNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG----Y-DILEQNA 110 (516)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT----C-EEEEECT
T ss_pred CCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC----C-CEEEEeC
Confidence 3456789999999999999864 1347899999999999999999998863 2 2445555
Q ss_pred cCCcCHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCccc-----hhhhcCCCCCCCCCcEEEE
Q 037851 213 SDTPDIKKVQGELADQLGMQFDEESDVPGRARKLYARLQKENKILIILDNIWEDLD-----LEKVGVPSGNDCRGCKVLL 287 (1053)
Q Consensus 213 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~-----~~~l~~~~~~~~~gs~iiv 287 (1053)
+...... +....+...........-. ..... .....+++.+||+|+++.... +..+...+.. .+..||+
T Consensus 111 s~~~~~~-~~~~~i~~~~~~~~~~~~~-~~~~~--~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIl 184 (516)
T 1sxj_A 111 SDVRSKT-LLNAGVKNALDNMSVVGYF-KHNEE--AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLIL 184 (516)
T ss_dssp TSCCCHH-HHHHTGGGGTTBCCSTTTT-TC------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEE
T ss_pred CCcchHH-HHHHHHHHHhccccHHHHH-hhhhh--hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEE
Confidence 5544433 2222222211110000000 00000 000136788999999975421 1222111111 2334666
Q ss_pred EecChHH--HHhhC--CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCc-hHHHHHHHH
Q 037851 288 TARDRHV--LESIG--SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLP-IAIVTLAKA 354 (1053)
Q Consensus 288 TtR~~~v--~~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlP-lai~~~~~~ 354 (1053)
++.+... ..... ...+.+.+++.++..+.+.+.+...... --++....|++.++|.+ -|+..+...
T Consensus 185 i~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~-i~~~~l~~la~~s~GdiR~~i~~L~~~ 255 (516)
T 1sxj_A 185 ICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFK-LDPNVIDRLIQTTRGDIRQVINLLSTI 255 (516)
T ss_dssp EESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCC-CCTTHHHHHHHHTTTCHHHHHHHHTHH
T ss_pred EEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 6554321 11122 4568999999999999998776411100 11245778999999954 555555433
No 170
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.20 E-value=2.2e-05 Score=82.86 Aligned_cols=180 Identities=14% Similarity=0.147 Sum_probs=100.0
Q ss_pred cccccchHHHHHHHHHHh---cC---------CCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHH
Q 037851 152 YEAFESRMSTLKSLQNAL---LD---------PDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIK 219 (1053)
Q Consensus 152 ~~~~~gR~~~~~~l~~~l---~~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 219 (1053)
...++|.+..++++.+++ .. ...+.+.|+|++|+|||++|+.+++... . ..+.++.+.-.+.
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~--~---~~~~~~~~~~~~~- 78 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQ--V---PFLAMAGAEFVEV- 78 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHT--C---CEEEEETTTTSSS-
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhC--C---CEEEechHHHHhh-
Confidence 346778877776665543 22 2345688999999999999999999764 1 2334444332110
Q ss_pred HHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCcc-----------------chhhhcCCCC--CCC
Q 037851 220 KVQGELADQLGMQFDEESDVPGRARKLYARLQKENKILIILDNIWEDL-----------------DLEKVGVPSG--NDC 280 (1053)
Q Consensus 220 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~-----------------~~~~l~~~~~--~~~ 280 (1053)
. ..........+........+.+|++||++... .+..+...+. ...
T Consensus 79 -------------~--~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 143 (262)
T 2qz4_A 79 -------------I--GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTT 143 (262)
T ss_dssp -------------S--TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTT
T ss_pred -------------c--cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCC
Confidence 0 00011222333333334567999999997541 0111211111 112
Q ss_pred CCcEEEEEecChHHHHh----h-C-CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCch-HHHHHH
Q 037851 281 RGCKVLLTARDRHVLES----I-G-SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPI-AIVTLA 352 (1053)
Q Consensus 281 ~gs~iivTtR~~~v~~~----~-~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPl-ai~~~~ 352 (1053)
.+..||.||........ . . ...+.+...+.++-.++++..+...............+++.+.|.+- .+..+.
T Consensus 144 ~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~ 222 (262)
T 2qz4_A 144 DHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANIC 222 (262)
T ss_dssp CCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred CCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHH
Confidence 35577777766542221 1 1 35678899999999999988764222222222234778888888764 444443
No 171
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.19 E-value=4.3e-05 Score=82.85 Aligned_cols=183 Identities=17% Similarity=0.184 Sum_probs=107.2
Q ss_pred CCcccccchHHHHHHHHHHhc------------CCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcC
Q 037851 150 KGYEAFESRMSTLKSLQNALL------------DPDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPD 217 (1053)
Q Consensus 150 ~~~~~~~gR~~~~~~l~~~l~------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 217 (1053)
.....+.|.+..++.+.+.+. ....+-|.++|++|+|||+||+.+++.... ...+.++.+.-.+
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~----~~~~~i~~~~l~~ 84 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN----STFFSISSSDLVS 84 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTS----CEEEEEECCSSCC
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCC----CcEEEEEhHHHHh
Confidence 344567888888877776552 112367899999999999999999997621 1223344332111
Q ss_pred HHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCccc-------------hhhhcC---CCCCCCC
Q 037851 218 IKKVQGELADQLGMQFDEESDVPGRARKLYARLQKENKILIILDNIWEDLD-------------LEKVGV---PSGNDCR 281 (1053)
Q Consensus 218 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~-------------~~~l~~---~~~~~~~ 281 (1053)
. .....+.....+.+.....++.+|++|+++.... ...+.. .+.....
T Consensus 85 --------------~--~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~ 148 (322)
T 1xwi_A 85 --------------K--WLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDND 148 (322)
T ss_dssp --------------S--SCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCT
T ss_pred --------------h--hhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCC
Confidence 0 0111223444555555456789999999975410 011111 1111234
Q ss_pred CcEEEEEecChHHHH-h--hC-CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCc-hHHHHHHH
Q 037851 282 GCKVLLTARDRHVLE-S--IG-SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLP-IAIVTLAK 353 (1053)
Q Consensus 282 gs~iivTtR~~~v~~-~--~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlP-lai~~~~~ 353 (1053)
+..||.||....... . -. ...+.+...+.++-.++++.++...... --......|++.+.|.. -.|..+..
T Consensus 149 ~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~-l~~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 149 GILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNS-LTEADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp TEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBC-CCHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred CEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCC-CCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 556676776542211 1 12 4567888899999999999887532211 12345788999999874 34554443
No 172
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.19 E-value=8.3e-06 Score=92.50 Aligned_cols=182 Identities=12% Similarity=0.165 Sum_probs=105.6
Q ss_pred ccccc-ch--HHHHHHHHHHhcCCC-eeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHH
Q 037851 152 YEAFE-SR--MSTLKSLQNALLDPD-VTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELAD 227 (1053)
Q Consensus 152 ~~~~~-gR--~~~~~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 227 (1053)
...|+ |. ......+..+...+. ...+.|+|++|+||||||+.+++.......-..+++++... +..++..
T Consensus 104 fd~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~------~~~~~~~ 177 (440)
T 2z4s_A 104 FENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK------FLNDLVD 177 (440)
T ss_dssp GGGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHH------HHHHHHH
T ss_pred hhhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH------HHHHHHH
Confidence 34555 43 233444444444333 67899999999999999999999875331112345555432 3344444
Q ss_pred HhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCccc----hhhhcCCCCC-CCCCcEEEEEecCh---------H
Q 037851 228 QLGMQFDEESDVPGRARKLYARLQKENKILIILDNIWEDLD----LEKVGVPSGN-DCRGCKVLLTARDR---------H 293 (1053)
Q Consensus 228 ~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~----~~~l~~~~~~-~~~gs~iivTtR~~---------~ 293 (1053)
.+... ....+...+ ..+.-+|++||++.... .+.+...+.. ...|..||+||... .
T Consensus 178 ~~~~~---------~~~~~~~~~-~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~ 247 (440)
T 2z4s_A 178 SMKEG---------KLNEFREKY-RKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDR 247 (440)
T ss_dssp HHHTT---------CHHHHHHHH-TTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHH
T ss_pred HHHcc---------cHHHHHHHh-cCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHH
Confidence 43221 012333333 22677999999965431 1222221110 12467888888863 2
Q ss_pred HHHhhC-CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCchHHHH
Q 037851 294 VLESIG-SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPIAIVT 350 (1053)
Q Consensus 294 v~~~~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~ 350 (1053)
+...+. ...+.+.+++.++...++.+.+..... .--+++...|++.++|.+-.+.-
T Consensus 248 L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~-~i~~e~l~~la~~~~gn~R~l~~ 304 (440)
T 2z4s_A 248 LVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHG-ELPEEVLNFVAENVDDNLRRLRG 304 (440)
T ss_dssp HHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTC-CCCTTHHHHHHHHCCSCHHHHHH
T ss_pred HHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHhcCCCHHHHHH
Confidence 223233 467899999999999999887741100 01124577888999998865543
No 173
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.17 E-value=1.9e-05 Score=89.35 Aligned_cols=177 Identities=13% Similarity=0.160 Sum_probs=106.4
Q ss_pred CcccccchHHHH---HHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCC-cCHHHHHHHHH
Q 037851 151 GYEAFESRMSTL---KSLQNALLDPDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDT-PDIKKVQGELA 226 (1053)
Q Consensus 151 ~~~~~~gR~~~~---~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~ 226 (1053)
....++|.+..+ ..+...+..++.+.+.|+|++|+||||+|+.+++... .. ++.++.. ....++ +.++
T Consensus 24 ~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~--~~-----f~~l~a~~~~~~~i-r~~~ 95 (447)
T 3pvs_A 24 NLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYAN--AD-----VERISAVTSGVKEI-REAI 95 (447)
T ss_dssp STTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTT--CE-----EEEEETTTCCHHHH-HHHH
T ss_pred CHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhC--CC-----eEEEEeccCCHHHH-HHHH
Confidence 345788988888 6777777767778899999999999999999998764 11 2333322 222222 1111
Q ss_pred HHhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCcc--chhhhcCCCCCCCCCcEEEE-EecChHH--HHh-hC-
Q 037851 227 DQLGMQFDEESDVPGRARKLYARLQKENKILIILDNIWEDL--DLEKVGVPSGNDCRGCKVLL-TARDRHV--LES-IG- 299 (1053)
Q Consensus 227 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~iiv-TtR~~~v--~~~-~~- 299 (1053)
. ........+++.+|++|+++... +.+.+...+.. + ...+|. ||.+... ... ..
T Consensus 96 ~-----------------~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~-~-~v~lI~att~n~~~~l~~aL~sR 156 (447)
T 3pvs_A 96 E-----------------RARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED-G-TITFIGATTENPSFELNSALLSR 156 (447)
T ss_dssp H-----------------HHHHHHHTTCCEEEEEETTTCC------CCHHHHHT-T-SCEEEEEESSCGGGSSCHHHHTT
T ss_pred H-----------------HHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc-C-ceEEEecCCCCcccccCHHHhCc
Confidence 1 11111123678999999997652 23333222222 1 234444 5555421 111 11
Q ss_pred CCcccccCCCHHHHHHHHHHHhCCC------CCCccchHHHHHHHHHhCCCchHHHHHHHH
Q 037851 300 SKTLRIDVLNDEEAWTLFKKMTGDC------AEKGELKSIATDVAKECGGLPIAIVTLAKA 354 (1053)
Q Consensus 300 ~~~~~l~~L~~~~~~~lf~~~~~~~------~~~~~~~~~~~~i~~~~~GlPlai~~~~~~ 354 (1053)
..++.+.+++.++...++.+.+... ....--++..+.|++.++|.+-.+..+...
T Consensus 157 ~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le~ 217 (447)
T 3pvs_A 157 ARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEM 217 (447)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred eeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 4578899999999999998876421 111223567888999999988655544433
No 174
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.16 E-value=4.3e-07 Score=100.85 Aligned_cols=134 Identities=17% Similarity=0.137 Sum_probs=92.7
Q ss_pred CCceeEEeecCccccC--CCcccccCccCcEEEcCCcccCC--cccc-----CCCCCCcEEEccCCCCcc-----cchhh
Q 037851 527 TPKLKVLDFTRMRLLS--LPSSIHLLTDLRTLCLDGCELED--IRVI-----GELKDLEILSLQGSKIEQ-----LPREI 592 (1053)
Q Consensus 527 ~~~Lr~L~l~~~~~~~--lp~~i~~l~~Lr~L~L~~~~~~~--~~~i-----~~l~~L~~L~l~~~~l~~-----lp~~i 592 (1053)
.+.|+.|++++|.+.. +......+.+|++|+|++|.+.. ...+ ...++|++|+|++|.+.. ++..+
T Consensus 100 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L 179 (372)
T 3un9_A 100 RHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL 179 (372)
T ss_dssp SSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHH
T ss_pred CCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHH
Confidence 4689999999998762 22223456788999999998865 2333 356789999999998863 56666
Q ss_pred hccCCCCeeeccCcccccccC----cchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCCeEEEEeccC
Q 037851 593 GQLTQLKLLDLSNCSKLKVIA----PNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLEINILDA 668 (1053)
Q Consensus 593 ~~L~~L~~L~l~~~~~l~~~~----~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~~ 668 (1053)
..+++|++|+|++| .+.... ...+...++|++|++++|.+... ........+...++|+.|+++++..
T Consensus 180 ~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~-------g~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 180 AGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYNGAGDT-------AALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp HTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHH-------HHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred hcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHH-------HHHHHHHHHHhCCCCCEEeccCCCC
Confidence 78889999999985 454422 23356778899999998876211 0112334566678899998887754
No 175
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.14 E-value=3.4e-05 Score=83.91 Aligned_cols=182 Identities=19% Similarity=0.195 Sum_probs=108.2
Q ss_pred CCCcccccchHHHHHHHHHHhc----------C--CCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCc
Q 037851 149 GKGYEAFESRMSTLKSLQNALL----------D--PDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTP 216 (1053)
Q Consensus 149 ~~~~~~~~gR~~~~~~l~~~l~----------~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 216 (1053)
......++|.+..++++.+++. . ...+-|.++|++|+|||++|+.+++... .. .+.++.+
T Consensus 14 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~--~~---~~~v~~~--- 85 (322)
T 3eie_A 14 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN--ST---FFSVSSS--- 85 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHT--CE---EEEEEHH---
T ss_pred CCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHC--CC---EEEEchH---
Confidence 3445678999999998888762 1 1235789999999999999999998764 11 2333322
Q ss_pred CHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCccc-------------hhhhc---CCCCCCC
Q 037851 217 DIKKVQGELADQLGMQFDEESDVPGRARKLYARLQKENKILIILDNIWEDLD-------------LEKVG---VPSGNDC 280 (1053)
Q Consensus 217 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~-------------~~~l~---~~~~~~~ 280 (1053)
++. .. ...........+.......++.+|++|+++.... ...+. ..+....
T Consensus 86 ---~l~----~~------~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 152 (322)
T 3eie_A 86 ---DLV----SK------WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDS 152 (322)
T ss_dssp ---HHH----TT------TGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSC
T ss_pred ---HHh----hc------ccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccC
Confidence 111 00 0011123344444444456778999999974311 11111 1111223
Q ss_pred CCcEEEEEecChHHHHh-h--C-CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCC-chHHHHHH
Q 037851 281 RGCKVLLTARDRHVLES-I--G-SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGL-PIAIVTLA 352 (1053)
Q Consensus 281 ~gs~iivTtR~~~v~~~-~--~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~Gl-Plai~~~~ 352 (1053)
.+..||.||........ + . ...+.+...+.++-.++++.++...... .-......|++.+.|. +-.|..+.
T Consensus 153 ~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 153 QGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCV-LTKEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp CCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCC-CCHHHHHHHHHTTTTCCHHHHHHHH
T ss_pred CceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCC-CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 45677778876432211 1 1 4567888899999999999988643211 1234577888998884 44444433
No 176
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.12 E-value=7.5e-07 Score=85.46 Aligned_cols=90 Identities=18% Similarity=0.262 Sum_probs=59.1
Q ss_pred cccceEeecccccceeccCCccccccccCCcccEEEEecCccccccccchhHhh----hccCcEEEEecccccceeeccc
Q 037851 913 PNLEVLEVRDLNVAKIWHNQFSAAMSCNVQNLTRLVVLDCHKLRYVFSYSTAKR----LGQLKHLVISRCPLLEEIVGKE 988 (1053)
Q Consensus 913 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~l~~----l~sL~~L~i~~c~~l~~i~~~~ 988 (1053)
..|++|++++|.+++..- ..+..+++|++|++++|.++++-... .+.. .++|++|+|++|+.+++-
T Consensus 61 ~~L~~LDLs~~~Itd~GL-----~~L~~~~~L~~L~L~~C~~ItD~gL~-~L~~~~~~~~~L~~L~Ls~C~~ITD~---- 130 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGF-----DHMEGLQYVEKIRLCKCHYIEDGCLE-RLSQLENLQKSMLEMEIISCGNVTDK---- 130 (176)
T ss_dssp CCEEEEEEESCCCCGGGG-----GGGTTCSCCCEEEEESCTTCCHHHHH-HHHTCHHHHHHCCEEEEESCTTCCHH----
T ss_pred ceEeEEeCcCCCccHHHH-----HHhcCCCCCCEEEeCCCCccCHHHHH-HHHhcccccCCCCEEEcCCCCcCCHH----
Confidence 368889999887665321 22356788899999999888875332 2232 347888888888877654
Q ss_pred CccccCCcccccccCcccccccccccc
Q 037851 989 GGVEADPSFVFPQLTILKLSSLPELRA 1015 (1053)
Q Consensus 989 ~~~~~~~~~~~p~L~~L~l~~c~~L~~ 1015 (1053)
|+.. ...+|+|++|+|++|+.++.
T Consensus 131 -Gl~~--L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 131 -GIIA--LHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp -HHHH--GGGCTTCCEEEEESCTTCCC
T ss_pred -HHHH--HhcCCCCCEEECCCCCCCCc
Confidence 2211 23467777777777776654
No 177
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.12 E-value=1.3e-06 Score=83.91 Aligned_cols=92 Identities=10% Similarity=0.017 Sum_probs=67.6
Q ss_pred CcccEEEEecCccccccccchhHhhhccCcEEEEecccccceeecccCccccCCc--ccccccCccccccccccccccCC
Q 037851 942 QNLTRLVVLDCHKLRYVFSYSTAKRLGQLKHLVISRCPLLEEIVGKEGGVEADPS--FVFPQLTILKLSSLPELRAFYPG 1019 (1053)
Q Consensus 942 ~~L~~L~i~~c~~l~~l~~~~~l~~l~sL~~L~i~~c~~l~~i~~~~~~~~~~~~--~~~p~L~~L~l~~c~~L~~l~~~ 1019 (1053)
.+|++|++++|. +++... ..+.++++|++|++++|..+++-. +..... ...++|++|+|++|++++.-...
T Consensus 61 ~~L~~LDLs~~~-Itd~GL-~~L~~~~~L~~L~L~~C~~ItD~g-----L~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~ 133 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGF-DHMEGLQYVEKIRLCKCHYIEDGC-----LERLSQLENLQKSMLEMEIISCGNVTDKGII 133 (176)
T ss_dssp CCEEEEEEESCC-CCGGGG-GGGTTCSCCCEEEEESCTTCCHHH-----HHHHHTCHHHHHHCCEEEEESCTTCCHHHHH
T ss_pred ceEeEEeCcCCC-ccHHHH-HHhcCCCCCCEEEeCCCCccCHHH-----HHHHHhcccccCCCCEEEcCCCCcCCHHHHH
Confidence 469999999997 777643 345789999999999999887542 111111 12468999999999998753322
Q ss_pred CCccCCCCcceEEEecCCCCcc
Q 037851 1020 IHTLECPILTKLEVSFCHKLES 1041 (1053)
Q Consensus 1020 ~~~~~~~sL~~L~I~~Cp~L~~ 1041 (1053)
.. ..+++|++|++++||++..
T Consensus 134 ~L-~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 134 AL-HHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HG-GGCTTCCEEEEESCTTCCC
T ss_pred HH-hcCCCCCEEECCCCCCCCc
Confidence 11 2579999999999999874
No 178
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.10 E-value=4.3e-05 Score=84.30 Aligned_cols=181 Identities=13% Similarity=0.084 Sum_probs=105.3
Q ss_pred CcccccchHHHHHHHHHHhc------------CCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCH
Q 037851 151 GYEAFESRMSTLKSLQNALL------------DPDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDI 218 (1053)
Q Consensus 151 ~~~~~~gR~~~~~~l~~~l~------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 218 (1053)
....++|.+..++++.+.+. ....+.|.|+|++|+|||++|+.+++... ...+.++++.-..
T Consensus 82 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~-----~~~~~i~~~~l~~- 155 (357)
T 3d8b_A 82 NWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSG-----ATFFSISASSLTS- 155 (357)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTT-----CEEEEEEGGGGCC-
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcC-----CeEEEEehHHhhc-
Confidence 34568899999888887763 12356889999999999999999998753 1234455442211
Q ss_pred HHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCcc-------------chhhhcCCCC----CCCC
Q 037851 219 KKVQGELADQLGMQFDEESDVPGRARKLYARLQKENKILIILDNIWEDL-------------DLEKVGVPSG----NDCR 281 (1053)
Q Consensus 219 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~-------------~~~~l~~~~~----~~~~ 281 (1053)
. ...........+.......++.+|+||+++... ....+...+. ....
T Consensus 156 -------------~--~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~ 220 (357)
T 3d8b_A 156 -------------K--WVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSED 220 (357)
T ss_dssp -------------S--STTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCC
T ss_pred -------------c--ccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCC
Confidence 0 000111223333333334678999999995320 0112211111 1123
Q ss_pred CcEEEEEecChHHHH-h-h-C-CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCC-chHHHHHHH
Q 037851 282 GCKVLLTARDRHVLE-S-I-G-SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGL-PIAIVTLAK 353 (1053)
Q Consensus 282 gs~iivTtR~~~v~~-~-~-~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~Gl-Plai~~~~~ 353 (1053)
+..||.||....... . . . ...+.+...+.++..+++...+..... .-..+....|++.+.|. +-.+..+..
T Consensus 221 ~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~-~l~~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 221 RILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQC-CLSEEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp CEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCB-CCCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCC-CccHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 456676776542211 1 1 2 346788889999999999877642211 11245678899999984 455555443
No 179
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.08 E-value=7.2e-06 Score=90.95 Aligned_cols=195 Identities=13% Similarity=0.104 Sum_probs=106.3
Q ss_pred CcccccchHHHHHHHHHHh-cCCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCC----CCe-------------------
Q 037851 151 GYEAFESRMSTLKSLQNAL-LDPDVTITGVYGMGGLGKTTLVKEVARQVKKDKH----FDE------------------- 206 (1053)
Q Consensus 151 ~~~~~~gR~~~~~~l~~~l-~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----f~~------------------- 206 (1053)
....++|++..++.+.+++ ..++.+.+.|+|+.|+||||+|+.++........ ++.
T Consensus 12 ~~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~ 91 (354)
T 1sxj_E 12 SLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSP 91 (354)
T ss_dssp SGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECS
T ss_pred CHHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeeccc
Confidence 3456889999999999888 6555445999999999999999999986421110 000
Q ss_pred -EEEEEEcCCc-CHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCcc--chhhhcCCCCCCCCC
Q 037851 207 -VVFAEVSDTP-DIKKVQGELADQLGMQFDEESDVPGRARKLYARLQKENKILIILDNIWEDL--DLEKVGVPSGNDCRG 282 (1053)
Q Consensus 207 -~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~g 282 (1053)
.+.+..+... ......+++++.+.....-.. .. . ...+ .+++-++|+|++.... ....+...+.....+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~-~-ls~l-~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~ 164 (354)
T 1sxj_E 92 YHLEITPSDMGNNDRIVIQELLKEVAQMEQVDF----QD-S-KDGL-AHRYKCVIINEANSLTKDAQAALRRTMEKYSKN 164 (354)
T ss_dssp SEEEECCC----CCHHHHHHHHHHHTTTTC-------------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTTT
T ss_pred ceEEecHhhcCCcchHHHHHHHHHHHHhccccc----cc-c-cccc-CCCCeEEEEeCccccCHHHHHHHHHHHHhhcCC
Confidence 1111111100 000012223332211100000 00 0 0001 1467799999997642 122222222111246
Q ss_pred cEEEEEecChH-HHHhh-C-CCcccccCCCHHHHHHHHHHHhCCCCCCccc-hHHHHHHHHHhCCCchHHHHHHH
Q 037851 283 CKVLLTARDRH-VLESI-G-SKTLRIDVLNDEEAWTLFKKMTGDCAEKGEL-KSIATDVAKECGGLPIAIVTLAK 353 (1053)
Q Consensus 283 s~iivTtR~~~-v~~~~-~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~-~~~~~~i~~~~~GlPlai~~~~~ 353 (1053)
.++|++|.+.. +.... . ...+++.+++.++..+.+.+.+..... .-- ++....|++.++|.+..+..+..
T Consensus 165 ~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~l~~i~~~~~G~~r~a~~~l~ 238 (354)
T 1sxj_E 165 IRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERI-QLETKDILKRIAQASNGNLRVSLLMLE 238 (354)
T ss_dssp EEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC-EECCSHHHHHHHHHHTTCHHHHHHHHT
T ss_pred CEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCC-CCCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 77888877542 22211 1 467899999999999999887642111 111 35678899999999866554443
No 180
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.07 E-value=1.3e-05 Score=86.90 Aligned_cols=152 Identities=13% Similarity=0.130 Sum_probs=85.8
Q ss_pred cccchHHHHHHHHHHhc---------------CCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCH
Q 037851 154 AFESRMSTLKSLQNALL---------------DPDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDI 218 (1053)
Q Consensus 154 ~~~gR~~~~~~l~~~l~---------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 218 (1053)
.++|.+..++.+.+++. ......+.|+|++|+|||++|+.+++...........-++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~--- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD--- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG---
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH---
Confidence 46787777777765543 233457899999999999999999988764333222123333311
Q ss_pred HHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCc-----------cchhhhcCCCCCCCCCcEEEE
Q 037851 219 KKVQGELADQLGMQFDEESDVPGRARKLYARLQKENKILIILDNIWED-----------LDLEKVGVPSGNDCRGCKVLL 287 (1053)
Q Consensus 219 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~-----------~~~~~l~~~~~~~~~gs~iiv 287 (1053)
.+.... ..........+.... +.-+|++|+++.. .....+...+.....+..||.
T Consensus 109 ---------~l~~~~--~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~ 174 (309)
T 3syl_A 109 ---------DLVGQY--IGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVIL 174 (309)
T ss_dssp ---------GTCCSS--TTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEE
T ss_pred ---------Hhhhhc--ccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEE
Confidence 000000 011111122222222 3459999999733 222333332223334667888
Q ss_pred EecChHHHHh------h--C-CCcccccCCCHHHHHHHHHHHhC
Q 037851 288 TARDRHVLES------I--G-SKTLRIDVLNDEEAWTLFKKMTG 322 (1053)
Q Consensus 288 TtR~~~v~~~------~--~-~~~~~l~~L~~~~~~~lf~~~~~ 322 (1053)
||........ + . ...+.+.+++.++...++...+.
T Consensus 175 ~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 175 AGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp EECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHH
T ss_pred eCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHH
Confidence 8865432111 0 1 36789999999999999987764
No 181
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.01 E-value=0.00013 Score=78.39 Aligned_cols=180 Identities=16% Similarity=0.145 Sum_probs=104.5
Q ss_pred CCcccccchHHHHHHHHHHhcC------------CCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcC
Q 037851 150 KGYEAFESRMSTLKSLQNALLD------------PDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPD 217 (1053)
Q Consensus 150 ~~~~~~~gR~~~~~~l~~~l~~------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 217 (1053)
.....++|.+..++.+.+++.. ...+.+.|+|++|+||||+|+.+++.... ..+.++.+.-..
T Consensus 18 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~-----~~~~i~~~~l~~ 92 (297)
T 3b9p_A 18 VEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSA-----TFLNISAASLTS 92 (297)
T ss_dssp CCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTC-----EEEEEESTTTSS
T ss_pred CCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCC-----CeEEeeHHHHhh
Confidence 3456789999999988877631 23468899999999999999999987641 223344332111
Q ss_pred HHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCccc-------------hhhhc---CCCCC--C
Q 037851 218 IKKVQGELADQLGMQFDEESDVPGRARKLYARLQKENKILIILDNIWEDLD-------------LEKVG---VPSGN--D 279 (1053)
Q Consensus 218 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~-------------~~~l~---~~~~~--~ 279 (1053)
. ...........+.......++.+|++|+++.... ...+. ..++. .
T Consensus 93 --------------~--~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 156 (297)
T 3b9p_A 93 --------------K--YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPD 156 (297)
T ss_dssp --------------S--SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC----
T ss_pred --------------c--ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCC
Confidence 0 0111123333444444446788999999965311 00111 11111 1
Q ss_pred CCCcEEEEEecChH-----HHHhhCCCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCch-HHHHHH
Q 037851 280 CRGCKVLLTARDRH-----VLESIGSKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPI-AIVTLA 352 (1053)
Q Consensus 280 ~~gs~iivTtR~~~-----v~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPl-ai~~~~ 352 (1053)
+.+..||.||.... +...+ ...+.+...+.++...++...+..... .--.+....|++.+.|.+- ++..+.
T Consensus 157 ~~~v~vi~~tn~~~~l~~~l~~R~-~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~~~~~la~~~~g~~~~~l~~l~ 233 (297)
T 3b9p_A 157 GDRIVVLAATNRPQELDEAALRRF-TKRVYVSLPDEQTRELLLNRLLQKQGS-PLDTEALRRLAKITDGYSGSDLTALA 233 (297)
T ss_dssp --CEEEEEEESCGGGBCHHHHHHC-CEEEECCCCCHHHHHHHHHHHHGGGSC-CSCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCcEEEEeecCChhhCCHHHHhhC-CeEEEeCCcCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 23456777777643 22212 356677778888888888877642111 1123457789999999886 454443
No 182
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.00 E-value=9.9e-05 Score=81.17 Aligned_cols=180 Identities=18% Similarity=0.210 Sum_probs=104.2
Q ss_pred CcccccchHHHHHHHHHHhc----C--------CCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCH
Q 037851 151 GYEAFESRMSTLKSLQNALL----D--------PDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDI 218 (1053)
Q Consensus 151 ~~~~~~gR~~~~~~l~~~l~----~--------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 218 (1053)
....++|.+..++.+.+.+. . ...+-|.++|++|+|||++|+.+++... . ..+.++.+
T Consensus 49 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~--~---~~~~v~~~----- 118 (355)
T 2qp9_X 49 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN--S---TFFSVSSS----- 118 (355)
T ss_dssp CGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHT--C---EEEEEEHH-----
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC--C---CEEEeeHH-----
Confidence 34568888888888877662 1 1234588999999999999999999874 1 12233222
Q ss_pred HHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCccc-------------hhhhcCC---CCCCCCC
Q 037851 219 KKVQGELADQLGMQFDEESDVPGRARKLYARLQKENKILIILDNIWEDLD-------------LEKVGVP---SGNDCRG 282 (1053)
Q Consensus 219 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~-------------~~~l~~~---~~~~~~g 282 (1053)
++.. . . ..........+.......++.+|++|+++.... ...+... +.....+
T Consensus 119 -~l~~----~----~--~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 187 (355)
T 2qp9_X 119 -DLVS----K----W--MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQG 187 (355)
T ss_dssp -HHHS----C----C-----CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CC
T ss_pred -HHhh----h----h--cchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCC
Confidence 1111 0 0 011123334444444446789999999975321 1112111 1112245
Q ss_pred cEEEEEecChHHHH-h--hC-CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCC-chHHHHHH
Q 037851 283 CKVLLTARDRHVLE-S--IG-SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGL-PIAIVTLA 352 (1053)
Q Consensus 283 s~iivTtR~~~v~~-~--~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~Gl-Plai~~~~ 352 (1053)
..||.||....... . -. ...+.+...+.++-.++++.++...... --......|++.+.|. +-.|..+.
T Consensus 188 v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~-~~~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 188 VLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSV-LTKEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp EEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBC-CCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred eEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCC-CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 66777776552111 1 12 4567888899999999999887643211 1134577899999985 44454443
No 183
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.99 E-value=2.3e-05 Score=85.58 Aligned_cols=178 Identities=12% Similarity=0.121 Sum_probs=103.2
Q ss_pred CCcccccchHHHHHHHHHHhcCCCe-eEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHH
Q 037851 150 KGYEAFESRMSTLKSLQNALLDPDV-TITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQ 228 (1053)
Q Consensus 150 ~~~~~~~gR~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 228 (1053)
.....++|++..++.+.+++..+.. .++.+.|++|+|||++|+.+++... ..++.++.+.. ....+ +..+..
T Consensus 23 ~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~-----~~~~~i~~~~~-~~~~i-~~~~~~ 95 (324)
T 3u61_B 23 STIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVN-----ADMMFVNGSDC-KIDFV-RGPLTN 95 (324)
T ss_dssp CSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTT-----EEEEEEETTTC-CHHHH-HTHHHH
T ss_pred CCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhC-----CCEEEEccccc-CHHHH-HHHHHH
Confidence 3456789999999999999885543 5777888899999999999998763 22445554432 22222 221111
Q ss_pred hCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCcc---chhhhcCCCCCCCCCcEEEEEecChHHH-Hhh--CCCc
Q 037851 229 LGMQFDEESDVPGRARKLYARLQKENKILIILDNIWEDL---DLEKVGVPSGNDCRGCKVLLTARDRHVL-ESI--GSKT 302 (1053)
Q Consensus 229 l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~---~~~~l~~~~~~~~~gs~iivTtR~~~v~-~~~--~~~~ 302 (1053)
...... ..+++-+||+||++... ....+...+.....+.++|+||....-. ... ....
T Consensus 96 ~~~~~~----------------~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~ 159 (324)
T 3u61_B 96 FASAAS----------------FDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRV 159 (324)
T ss_dssp HHHBCC----------------CSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEE
T ss_pred HHhhcc----------------cCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcE
Confidence 100000 02478899999998654 2233322221112356788888765311 111 1357
Q ss_pred ccccCCCHHHHHHHHHH-------HhCCCCCCccch-HHHHHHHHHhCCCchHHHHH
Q 037851 303 LRIDVLNDEEAWTLFKK-------MTGDCAEKGELK-SIATDVAKECGGLPIAIVTL 351 (1053)
Q Consensus 303 ~~l~~L~~~~~~~lf~~-------~~~~~~~~~~~~-~~~~~i~~~~~GlPlai~~~ 351 (1053)
+++.+++.++-.+++.. .+..... .--+ +....|++.++|.+..+...
T Consensus 160 i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~-~~~~~~~~~~l~~~~~gd~R~a~~~ 215 (324)
T 3u61_B 160 ITFGQPTDEDKIEMMKQMIRRLTEICKHEGI-AIADMKVVAALVKKNFPDFRKTIGE 215 (324)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHHHHHHHHTC-CBSCHHHHHHHHHHTCSCTTHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHHHHHHHHHHHcCC-CCCcHHHHHHHHHhCCCCHHHHHHH
Confidence 89999998885443322 2211111 1112 66788999998887654433
No 184
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.99 E-value=5.8e-05 Score=84.51 Aligned_cols=130 Identities=14% Similarity=0.200 Sum_probs=96.8
Q ss_pred CCcccccCCCceeEEeecCccccCCC-cccccCccCcEEEcCCcccCC-c-cccCCCCCCcEEEccCCCCcccch-hhhc
Q 037851 519 IPDNIFIGTPKLKVLDFTRMRLLSLP-SSIHLLTDLRTLCLDGCELED-I-RVIGELKDLEILSLQGSKIEQLPR-EIGQ 594 (1053)
Q Consensus 519 ~~~~~~~~~~~Lr~L~l~~~~~~~lp-~~i~~l~~Lr~L~L~~~~~~~-~-~~i~~l~~L~~L~l~~~~l~~lp~-~i~~ 594 (1053)
++...|.++ .|+.+.+.. .+..++ .+|..+.+|+.+++.+|.+.. + ..+. ..+|+.+.+..+ ++.++. .+.+
T Consensus 149 I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~ 224 (401)
T 4fdw_A 149 IGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLK 224 (401)
T ss_dssp ECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTT
T ss_pred ECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhC
Confidence 666677774 699999886 566664 468899999999999988877 3 3344 689999999854 777764 5688
Q ss_pred cCCCCeeeccCcccccccCcchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCCeEEEEecc
Q 037851 595 LTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLEINILD 667 (1053)
Q Consensus 595 L~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~ 667 (1053)
+.+|+.+++.. ++..++...+.+ ++|+.+.+..+ + .......+.++++|+.+.+..+.
T Consensus 225 ~~~L~~l~l~~--~l~~I~~~aF~~-~~L~~i~lp~~-i-----------~~I~~~aF~~c~~L~~l~l~~~~ 282 (401)
T 4fdw_A 225 TSQLKTIEIPE--NVSTIGQEAFRE-SGITTVKLPNG-V-----------TNIASRAFYYCPELAEVTTYGST 282 (401)
T ss_dssp CTTCCCEECCT--TCCEECTTTTTT-CCCSEEEEETT-C-----------CEECTTTTTTCTTCCEEEEESSC
T ss_pred CCCCCEEecCC--CccCcccccccc-CCccEEEeCCC-c-----------cEEChhHhhCCCCCCEEEeCCcc
Confidence 99999999986 477787777777 78999988543 2 11223456788899999887653
No 185
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.99 E-value=5.8e-05 Score=82.42 Aligned_cols=168 Identities=12% Similarity=0.104 Sum_probs=101.4
Q ss_pred HHHHHHHHHHhcCCC-eeEEEEEcCCCCcHHHHHHHHHHHhhhcC--------------------CCCeEEEEEEc---C
Q 037851 159 MSTLKSLQNALLDPD-VTITGVYGMGGLGKTTLVKEVARQVKKDK--------------------HFDEVVFAEVS---D 214 (1053)
Q Consensus 159 ~~~~~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~--------------------~f~~~~wv~~s---~ 214 (1053)
++..+.+.+.+..++ ...+.++|+.|+||||+|+.+++...-.. ++| ..++... .
T Consensus 8 ~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~~~~ 86 (334)
T 1a5t_A 8 RPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAPEKGKN 86 (334)
T ss_dssp HHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECCCTTCS
T ss_pred HHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccccCC
Confidence 455677777776655 45799999999999999999998864221 122 2223221 1
Q ss_pred CcCHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCcc--chhhhcCCCCCCCCCcEEEEEecCh
Q 037851 215 TPDIKKVQGELADQLGMQFDEESDVPGRARKLYARLQKENKILIILDNIWEDL--DLEKVGVPSGNDCRGCKVLLTARDR 292 (1053)
Q Consensus 215 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~iivTtR~~ 292 (1053)
...+..+ +++.+.+.... ..+++-++|+|+++... ..+.+...+-....++.+|++|.+.
T Consensus 87 ~~~i~~i-r~l~~~~~~~~-----------------~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~ 148 (334)
T 1a5t_A 87 TLGVDAV-REVTEKLNEHA-----------------RLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREP 148 (334)
T ss_dssp SBCHHHH-HHHHHHTTSCC-----------------TTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCG
T ss_pred CCCHHHH-HHHHHHHhhcc-----------------ccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCCh
Confidence 1222221 22222221110 02567889999997652 2333333332223466777777665
Q ss_pred H-HHHhhC--CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCchHHHHH
Q 037851 293 H-VLESIG--SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPIAIVTL 351 (1053)
Q Consensus 293 ~-v~~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~ 351 (1053)
+ +..... ...+++.+++.++..+.+.+... . -++....+++.++|.|..+..+
T Consensus 149 ~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~~--~----~~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 149 ERLLATLRSRCRLHYLAPPPEQYAVTWLSREVT--M----SQDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp GGSCHHHHTTSEEEECCCCCHHHHHHHHHHHCC--C----CHHHHHHHHHHTTTCHHHHHHT
T ss_pred HhCcHHHhhcceeeeCCCCCHHHHHHHHHHhcC--C----CHHHHHHHHHHcCCCHHHHHHH
Confidence 3 222221 45789999999999999988761 1 1345678999999999766443
No 186
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.97 E-value=0.00013 Score=82.74 Aligned_cols=183 Identities=18% Similarity=0.215 Sum_probs=106.5
Q ss_pred CCCcccccchHHHHHHHHHHhc------------CCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCc
Q 037851 149 GKGYEAFESRMSTLKSLQNALL------------DPDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTP 216 (1053)
Q Consensus 149 ~~~~~~~~gR~~~~~~l~~~l~------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 216 (1053)
......++|.+..++.+.+.+. ....+-|.++|++|+|||+||+.+++.... .-++.++...
T Consensus 130 ~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~------~~~~~v~~~~ 203 (444)
T 2zan_A 130 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN------STFFSISSSD 203 (444)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCS------SEEEEECCC-
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCC------CCEEEEeHHH
Confidence 3445678899988888887662 123467899999999999999999997621 1233333221
Q ss_pred CHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCcc-------------chhhhcCCCCC---CC
Q 037851 217 DIKKVQGELADQLGMQFDEESDVPGRARKLYARLQKENKILIILDNIWEDL-------------DLEKVGVPSGN---DC 280 (1053)
Q Consensus 217 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~-------------~~~~l~~~~~~---~~ 280 (1053)
+.... .+. .. .....+.......++.+|++|+++... ....+...+.. ..
T Consensus 204 ----l~~~~---~g~---~~----~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~ 269 (444)
T 2zan_A 204 ----LVSKW---LGE---SE----KLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDN 269 (444)
T ss_dssp ------------------CC----CTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCC
T ss_pred ----HHhhh---cch---HH----HHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCC
Confidence 11100 110 01 123344444444678999999997541 01222222221 23
Q ss_pred CCcEEEEEecChHHHHh--h-C-CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCC-chHHHHHH
Q 037851 281 RGCKVLLTARDRHVLES--I-G-SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGL-PIAIVTLA 352 (1053)
Q Consensus 281 ~gs~iivTtR~~~v~~~--~-~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~Gl-Plai~~~~ 352 (1053)
.+..||.||........ . . ...+.+...+.++-..+|+.++...... --......|++.+.|. +-.|..+.
T Consensus 270 ~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~-l~~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 270 DGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNS-LTEADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp SSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEE-CCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCC-CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 45677778866532211 1 2 3567788888999999998887532211 1134577899999985 44444443
No 187
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.96 E-value=0.00026 Score=79.54 Aligned_cols=107 Identities=10% Similarity=0.190 Sum_probs=56.3
Q ss_pred CCcccccCCCceeEEeecCccccCCCc-ccccCccCcEEEcCCcccCC--ccccCCCCCCcEEEccCCCCccc-------
Q 037851 519 IPDNIFIGTPKLKVLDFTRMRLLSLPS-SIHLLTDLRTLCLDGCELED--IRVIGELKDLEILSLQGSKIEQL------- 588 (1053)
Q Consensus 519 ~~~~~~~~~~~Lr~L~l~~~~~~~lp~-~i~~l~~Lr~L~L~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~l------- 588 (1053)
+....|.++.+|+.+.+.. .++.+++ +|.++.+|+.+++..+ ++. ...+.++.+|+.+.+..+ +..+
T Consensus 62 Ig~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~ 138 (394)
T 4fs7_A 62 IGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKG 138 (394)
T ss_dssp ECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTT
T ss_pred hHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeec
Confidence 4455567777777777753 3555543 4667777777777543 222 234555555555444322 1111
Q ss_pred ---------------c-hhhhccCCCCeeeccCcccccccCcchhcCCccCceeeccc
Q 037851 589 ---------------P-REIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMAN 630 (1053)
Q Consensus 589 ---------------p-~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~ 630 (1053)
+ ..+.++.+|+.+.+.. .+..++...+.++.+|+.+.+..
T Consensus 139 ~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~--~~~~I~~~~F~~c~~L~~i~l~~ 194 (394)
T 4fs7_A 139 CDFKEITIPEGVTVIGDEAFATCESLEYVSLPD--SMETLHNGLFSGCGKLKSIKLPR 194 (394)
T ss_dssp CCCSEEECCTTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCBCCCCT
T ss_pred ccccccccCccccccchhhhcccCCCcEEecCC--ccceeccccccCCCCceEEEcCC
Confidence 1 1244555566666543 23444445555566666655543
No 188
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.95 E-value=1.3e-05 Score=79.46 Aligned_cols=48 Identities=19% Similarity=0.243 Sum_probs=42.5
Q ss_pred cccccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 152 YEAFESRMSTLKSLQNALLDPDVTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 152 ~~~~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
...++||+.+++.+.+.+.....+.+.|+|++|+||||+|+.+++...
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 21 LDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred cchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 456899999999999999876667889999999999999999999864
No 189
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.95 E-value=0.00013 Score=81.63 Aligned_cols=181 Identities=15% Similarity=0.155 Sum_probs=104.4
Q ss_pred CCCcccccchHHHHHHHHHHhc------------CCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCc
Q 037851 149 GKGYEAFESRMSTLKSLQNALL------------DPDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTP 216 (1053)
Q Consensus 149 ~~~~~~~~gR~~~~~~l~~~l~------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 216 (1053)
......++|++..++.+.+++. ....+-|.|+|++|+|||++|+.+++.... ..+.++.+.-.
T Consensus 111 ~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~-----~~~~v~~~~l~ 185 (389)
T 3vfd_A 111 AVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNA-----TFFNISAASLT 185 (389)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTC-----EEEEECSCCC-
T ss_pred CCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcC-----cEEEeeHHHhh
Confidence 3445678999999999988772 122468899999999999999999887531 22333333221
Q ss_pred CHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCcc-------------chhhhcCCC---C-CC
Q 037851 217 DIKKVQGELADQLGMQFDEESDVPGRARKLYARLQKENKILIILDNIWEDL-------------DLEKVGVPS---G-ND 279 (1053)
Q Consensus 217 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~-------------~~~~l~~~~---~-~~ 279 (1053)
+ ... .........+........+.+|+||+++... ....+...+ . ..
T Consensus 186 ~--~~~--------------g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 249 (389)
T 3vfd_A 186 S--KYV--------------GEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAG 249 (389)
T ss_dssp ----------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC---
T ss_pred c--ccc--------------chHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccC
Confidence 1 000 0111223344444434567899999996430 001111111 0 11
Q ss_pred CCCcEEEEEecChHHHH-h-h-C-CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCch-HHHHH
Q 037851 280 CRGCKVLLTARDRHVLE-S-I-G-SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPI-AIVTL 351 (1053)
Q Consensus 280 ~~gs~iivTtR~~~v~~-~-~-~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPl-ai~~~ 351 (1053)
.....||.||....... . . . ...+.+...+.++..+++...+..... .-..+....|++.+.|..- ++..+
T Consensus 250 ~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~-~l~~~~~~~la~~~~g~~~~~l~~L 325 (389)
T 3vfd_A 250 DDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGS-PLTQKELAQLARMTDGYSGSDLTAL 325 (389)
T ss_dssp --CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCC-CSCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 22456666776543221 1 1 2 346788899999999999888753221 1223567889999998654 55444
No 190
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.95 E-value=3.2e-05 Score=85.07 Aligned_cols=172 Identities=15% Similarity=0.147 Sum_probs=103.2
Q ss_pred CcccccchHHHHHHHHHHhc-----CCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHH
Q 037851 151 GYEAFESRMSTLKSLQNALL-----DPDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGEL 225 (1053)
Q Consensus 151 ~~~~~~gR~~~~~~l~~~l~-----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 225 (1053)
....++|++..++++..++. ......|.|+|++|+|||++|+.+++... .. .+.++.+.......+
T Consensus 27 ~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~--~~---~~~~~~~~~~~~~~~---- 97 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMS--AN---IKTTAAPMIEKSGDL---- 97 (338)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTT--CC---EEEEEGGGCCSHHHH----
T ss_pred CHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhC--CC---eEEecchhccchhHH----
Confidence 45678999999998888775 23446789999999999999999988754 22 233333322111111
Q ss_pred HHHhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCcc--chhhhcCCC------------------CCCCCCcEE
Q 037851 226 ADQLGMQFDEESDVPGRARKLYARLQKENKILIILDNIWEDL--DLEKVGVPS------------------GNDCRGCKV 285 (1053)
Q Consensus 226 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~~------------------~~~~~gs~i 285 (1053)
...... ..+..+|+||+++... ....+...+ ....++.++
T Consensus 98 ------------------~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (338)
T 3pfi_A 98 ------------------AAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTL 157 (338)
T ss_dssp ------------------HHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEE
T ss_pred ------------------HHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEE
Confidence 111111 2456788899887541 111111100 001123567
Q ss_pred EEEecChHHHH-h-h-C-CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCchHHHHHH
Q 037851 286 LLTARDRHVLE-S-I-G-SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPIAIVTLA 352 (1053)
Q Consensus 286 ivTtR~~~v~~-~-~-~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~ 352 (1053)
|.||....... . . . ...+.+.+++.++...++.+.+.... ..--.+....|++.+.|.|-.+..+.
T Consensus 158 i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~-~~~~~~~~~~l~~~~~G~~r~l~~~l 227 (338)
T 3pfi_A 158 IGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLN-KTCEEKAALEIAKRSRSTPRIALRLL 227 (338)
T ss_dssp EEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT-CEECHHHHHHHHHTTTTCHHHHHHHH
T ss_pred EEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHCcCHHHHHHHH
Confidence 76666543211 1 1 1 36789999999999999988774211 11224667888899999986554443
No 191
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.93 E-value=0.00012 Score=79.84 Aligned_cols=175 Identities=13% Similarity=0.184 Sum_probs=105.4
Q ss_pred CCCCcccccchHHHHHHHHHHhc----C---------CCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcC
Q 037851 148 SGKGYEAFESRMSTLKSLQNALL----D---------PDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSD 214 (1053)
Q Consensus 148 ~~~~~~~~~gR~~~~~~l~~~l~----~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~ 214 (1053)
|.....++.|-++.+++|.+.+. . ...+-|.++|++|.|||.||+++++.... . .+.++.+.
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~--~---f~~v~~s~ 217 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDC--K---FIRVSGAE 217 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTC--E---EEEEEGGG
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCC--C---ceEEEhHH
Confidence 34455677888888877766543 1 23467889999999999999999998762 1 23344333
Q ss_pred CcCHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCcc----------c------hhhhcCCCC-
Q 037851 215 TPDIKKVQGELADQLGMQFDEESDVPGRARKLYARLQKENKILIILDNIWEDL----------D------LEKVGVPSG- 277 (1053)
Q Consensus 215 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~----------~------~~~l~~~~~- 277 (1053)
-.+ ......+..+..+........+.+|++|+++... + ...+...+.
T Consensus 218 l~s----------------k~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg 281 (405)
T 4b4t_J 218 LVQ----------------KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDG 281 (405)
T ss_dssp GSC----------------SSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHT
T ss_pred hhc----------------cccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhc
Confidence 211 0011112334444444445789999999997431 0 111111111
Q ss_pred -CCCCCcEEEEEecChHHHH----hhC--CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCc
Q 037851 278 -NDCRGCKVLLTARDRHVLE----SIG--SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLP 345 (1053)
Q Consensus 278 -~~~~gs~iivTtR~~~v~~----~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlP 345 (1053)
....+..||.||...+..+ .-| ...+.+..-+.++-.++|+.+........+. -...|++.+.|.-
T Consensus 282 ~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dv--dl~~lA~~t~G~S 354 (405)
T 4b4t_J 282 FETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGI--NLRKVAEKMNGCS 354 (405)
T ss_dssp TTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSC--CHHHHHHHCCSCC
T ss_pred cCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccC--CHHHHHHHCCCCC
Confidence 2234556777887654322 123 6788999999999999998887643222211 1466888888864
No 192
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.91 E-value=6.7e-07 Score=99.31 Aligned_cols=134 Identities=18% Similarity=0.215 Sum_probs=90.7
Q ss_pred CCceeEEeecCccccC-----CCcccc-cCccCcEEEcCCcccCC--ccc-cCCCCCCcEEEccCCCCcccc-----hhh
Q 037851 527 TPKLKVLDFTRMRLLS-----LPSSIH-LLTDLRTLCLDGCELED--IRV-IGELKDLEILSLQGSKIEQLP-----REI 592 (1053)
Q Consensus 527 ~~~Lr~L~l~~~~~~~-----lp~~i~-~l~~Lr~L~L~~~~~~~--~~~-i~~l~~L~~L~l~~~~l~~lp-----~~i 592 (1053)
++.|+.|++++|.+.. +...+. ...+|++|+|++|.+.. +.. ...+.+|++|+|++|.+...+ ..+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 4578899999998863 222233 23689999999999865 333 335678999999999887432 222
Q ss_pred -hccCCCCeeeccCcccccccC----cchhcCCccCceeecccccccccccCCcccccCCChhhhcCCCCCCeEEEEecc
Q 037851 593 -GQLTQLKLLDLSNCSKLKVIA----PNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLEINILD 667 (1053)
Q Consensus 593 -~~L~~L~~L~l~~~~~l~~~~----~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~ 667 (1053)
...++|++|++++| .+.... ...+..+++|++|++++|.+.... .......+...++|+.|+++++.
T Consensus 151 ~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g-------~~~L~~~L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 151 LHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEG-------LELLAAQLDRNRQLQELNVAYNG 222 (372)
T ss_dssp HSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHH-------HHHHHHHGGGCSCCCEEECCSSC
T ss_pred HhcCCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHH-------HHHHHHHHhcCCCcCeEECCCCC
Confidence 24678999999996 454421 223567889999999999872110 11224456677789999888765
Q ss_pred C
Q 037851 668 A 668 (1053)
Q Consensus 668 ~ 668 (1053)
.
T Consensus 223 i 223 (372)
T 3un9_A 223 A 223 (372)
T ss_dssp C
T ss_pred C
Confidence 3
No 193
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.91 E-value=4.7e-05 Score=83.57 Aligned_cols=181 Identities=13% Similarity=0.118 Sum_probs=103.6
Q ss_pred CCcccccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCC-eEEEEEEcCCcCHHHHHHHHHHH
Q 037851 150 KGYEAFESRMSTLKSLQNALLDPDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFD-EVVFAEVSDTPDIKKVQGELADQ 228 (1053)
Q Consensus 150 ~~~~~~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~i~~~ 228 (1053)
.....++|.+..++.+..++..++.+.+.++|+.|+||||+|+.+++..... .+. .+..++.+.......+. +++..
T Consensus 22 ~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~-~~~~~~~~~~~~~~~~~~~ir-~~i~~ 99 (340)
T 1sxj_C 22 ETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGK-NYSNMVLELNASDDRGIDVVR-NQIKD 99 (340)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTT-SHHHHEEEECTTSCCSHHHHH-THHHH
T ss_pred CcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCC-CccceEEEEcCcccccHHHHH-HHHHH
Confidence 3345678988889988888877765558999999999999999999986421 111 12223333322222221 11111
Q ss_pred hCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCc--cchhhhcCCCCCCCCCcEEEEEecChH-HHHhh-C-CCcc
Q 037851 229 LGMQFDEESDVPGRARKLYARLQKENKILIILDNIWED--LDLEKVGVPSGNDCRGCKVLLTARDRH-VLESI-G-SKTL 303 (1053)
Q Consensus 229 l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtR~~~-v~~~~-~-~~~~ 303 (1053)
+..... .+ .+.+-++|+|+++.. ...+.+...+.......++|++|.... +.... . ...+
T Consensus 100 ~~~~~~--------------~~-~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~ 164 (340)
T 1sxj_C 100 FASTRQ--------------IF-SKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRF 164 (340)
T ss_dssp HHHBCC--------------SS-SCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred HHhhcc--------------cC-CCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeE
Confidence 100000 00 134678999999654 222222221111123567777775442 11111 1 3467
Q ss_pred cccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCchHH
Q 037851 304 RIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPIAI 348 (1053)
Q Consensus 304 ~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai 348 (1053)
.+.+++.++..+.+.+.+..... .--++..+.|++.++|.+--+
T Consensus 165 ~~~~l~~~~~~~~l~~~~~~~~~-~i~~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 165 RFQPLPQEAIERRIANVLVHEKL-KLSPNAEKALIELSNGDMRRV 208 (340)
T ss_dssp ECCCCCHHHHHHHHHHHHHTTTC-CBCHHHHHHHHHHHTTCHHHH
T ss_pred eccCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHH
Confidence 89999999999888877631111 112356788899999987644
No 194
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.89 E-value=2e-05 Score=86.65 Aligned_cols=16 Identities=25% Similarity=0.270 Sum_probs=9.9
Q ss_pred hhcCCCCCCeEEEEec
Q 037851 651 ELKNLSRLTSLEINIL 666 (1053)
Q Consensus 651 ~L~~l~~L~~L~i~~~ 666 (1053)
-+..+++|+.|.++++
T Consensus 167 ll~~~P~L~~L~L~g~ 182 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGT 182 (362)
T ss_dssp HHHTCTTCCEEEEECC
T ss_pred HHhcCCCCcEEEEeCC
Confidence 3455667777776654
No 195
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.86 E-value=4.5e-05 Score=87.27 Aligned_cols=149 Identities=11% Similarity=0.180 Sum_probs=86.4
Q ss_pred CcccccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCC----C-eEEEEEEcCCcCHHHHHHHH
Q 037851 151 GYEAFESRMSTLKSLQNALLDPDVTITGVYGMGGLGKTTLVKEVARQVKKDKHF----D-EVVFAEVSDTPDIKKVQGEL 225 (1053)
Q Consensus 151 ~~~~~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f----~-~~~wv~~s~~~~~~~~~~~i 225 (1053)
....++||+.+++.+++.+......-+.++|++|+|||++|+.+++........ + .++.++++
T Consensus 178 ~ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~------------ 245 (468)
T 3pxg_A 178 SLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG------------ 245 (468)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------------
T ss_pred CCCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC------------
Confidence 345689999999999999976555667899999999999999999987421100 1 12223332
Q ss_pred HHHhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCccchhhhcCCCCCCCCCcEEEEEecChHHHHh------h-
Q 037851 226 ADQLGMQFDEESDVPGRARKLYARLQKENKILIILDNIWEDLDLEKVGVPSGNDCRGCKVLLTARDRHVLES------I- 298 (1053)
Q Consensus 226 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~~------~- 298 (1053)
....+ ........+...+...++.+|++| ...+....+...+.. ...++|.+|........ .
T Consensus 246 -~~~~g------~~e~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~~--g~v~vI~at~~~e~~~~~~~~~al~ 314 (468)
T 3pxg_A 246 -TKYRG------EFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLAR--GELQCIGATTLDEYRKYIEKDAALE 314 (468)
T ss_dssp --------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTTS--SSCEEEEECCTTTTHHHHTTCSHHH
T ss_pred -ccccc------hHHHHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhcC--CCEEEEecCCHHHHHHHhhcCHHHH
Confidence 00000 000123344445545678899999 222222223333321 23566666655442111 1
Q ss_pred -CCCcccccCCCHHHHHHHHHHHhC
Q 037851 299 -GSKTLRIDVLNDEEAWTLFKKMTG 322 (1053)
Q Consensus 299 -~~~~~~l~~L~~~~~~~lf~~~~~ 322 (1053)
....+.+.+.+.++...++...+.
T Consensus 315 ~Rf~~i~v~~p~~e~~~~iL~~~~~ 339 (468)
T 3pxg_A 315 RRFQPIQVDQPSVDESIQILQGLRD 339 (468)
T ss_dssp HSEEEEECCCCCHHHHHHHHHHTTT
T ss_pred HhCccceeCCCCHHHHHHHHHHHHH
Confidence 134689999999999999987664
No 196
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.86 E-value=5.5e-05 Score=84.27 Aligned_cols=193 Identities=8% Similarity=0.038 Sum_probs=102.2
Q ss_pred cccccchHHHHHH---HHHHhcCCCe--eEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEc----CCcCHHHHH
Q 037851 152 YEAFESRMSTLKS---LQNALLDPDV--TITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVS----DTPDIKKVQ 222 (1053)
Q Consensus 152 ~~~~~gR~~~~~~---l~~~l~~~~~--~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s----~~~~~~~~~ 222 (1053)
...++|++..++. +.+.+..+.. +.+.|+|++|+|||++|+.+++.......| +.+... ......+..
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~---~~~~~~~~~~~~~~~~~~~ 119 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPF---TAIAGSEIFSLEMSKTEAL 119 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCE---EEEEGGGGSCSSSCHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCc---ccccchhhhhcccchhHHH
Confidence 5678999988766 4455544433 589999999999999999999987522121 222221 122333344
Q ss_pred HHHHHHhCC---------------------CC-------CC-CCC-hhHH---HHHHHHH-HhcCC----cEEEEEcCCC
Q 037851 223 GELADQLGM---------------------QF-------DE-ESD-VPGR---ARKLYAR-LQKEN----KILIILDNIW 264 (1053)
Q Consensus 223 ~~i~~~l~~---------------------~~-------~~-~~~-~~~~---~~~l~~~-l~~~~----~~LlvlDdv~ 264 (1053)
.+..+.... .. .. ... .... ....... ...++ +.+|++|+++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~ 199 (368)
T 3uk6_A 120 TQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVH 199 (368)
T ss_dssp HHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGG
T ss_pred HHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhcc
Confidence 333332110 00 00 000 1111 1111111 11233 3499999997
Q ss_pred Cc--cchhhhcCCCCCCCCCcEEEEEecC-----------------hHHHHhhCCCcccccCCCHHHHHHHHHHHhCCCC
Q 037851 265 ED--LDLEKVGVPSGNDCRGCKVLLTARD-----------------RHVLESIGSKTLRIDVLNDEEAWTLFKKMTGDCA 325 (1053)
Q Consensus 265 ~~--~~~~~l~~~~~~~~~gs~iivTtR~-----------------~~v~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~ 325 (1053)
.. .....+...+.... ...++++|.. +.+... ...+.+.+++.++..+++...+....
T Consensus 200 ~l~~~~~~~L~~~le~~~-~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR--~~~i~~~~~~~~e~~~il~~~~~~~~ 276 (368)
T 3uk6_A 200 MLDIESFSFLNRALESDM-APVLIMATNRGITRIRGTSYQSPHGIPIDLLDR--LLIVSTTPYSEKDTKQILRIRCEEED 276 (368)
T ss_dssp GSBHHHHHHHHHHTTCTT-CCEEEEEESCSEEECBTSSCEEETTCCHHHHTT--EEEEEECCCCHHHHHHHHHHHHHHTT
T ss_pred ccChHHHHHHHHHhhCcC-CCeeeeecccceeeeeccCCCCcccCCHHHHhh--ccEEEecCCCHHHHHHHHHHHHHHcC
Confidence 65 22223322222222 2234444431 122222 23479999999999999998764211
Q ss_pred CCccchHHHHHHHHHhC-CCchHHHHH
Q 037851 326 EKGELKSIATDVAKECG-GLPIAIVTL 351 (1053)
Q Consensus 326 ~~~~~~~~~~~i~~~~~-GlPlai~~~ 351 (1053)
..--++....|++.+. |.|-.+..+
T Consensus 277 -~~~~~~~l~~l~~~~~~G~~r~~~~l 302 (368)
T 3uk6_A 277 -VEMSEDAYTVLTRIGLETSLRYAIQL 302 (368)
T ss_dssp -CCBCHHHHHHHHHHHHHSCHHHHHHH
T ss_pred -CCCCHHHHHHHHHHhcCCCHHHHHHH
Confidence 1122456788888887 777555433
No 197
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.85 E-value=0.0004 Score=74.46 Aligned_cols=175 Identities=13% Similarity=0.192 Sum_probs=101.6
Q ss_pred CCcccccchHHHHHHHHHHhcC-------------CCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCc
Q 037851 150 KGYEAFESRMSTLKSLQNALLD-------------PDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTP 216 (1053)
Q Consensus 150 ~~~~~~~gR~~~~~~l~~~l~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 216 (1053)
.....++|.+..++++.+++.. ...+.|.|+|++|+|||++|+.+++... . . ++.++
T Consensus 12 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~--~---~--~i~v~--- 81 (301)
T 3cf0_A 12 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--A---N--FISIK--- 81 (301)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT--C---E--EEEEC---
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhC--C---C--EEEEE---
Confidence 3445688888887777766531 3356799999999999999999998764 1 1 23332
Q ss_pred CHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCccc----------------hhhhcCCCC--C
Q 037851 217 DIKKVQGELADQLGMQFDEESDVPGRARKLYARLQKENKILIILDNIWEDLD----------------LEKVGVPSG--N 278 (1053)
Q Consensus 217 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~----------------~~~l~~~~~--~ 278 (1053)
..++.... .+.. ......+.+......+.+|++|+++.... ...+...+. .
T Consensus 82 -~~~l~~~~---~g~~-------~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~ 150 (301)
T 3cf0_A 82 -GPELLTMW---FGES-------EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS 150 (301)
T ss_dssp -HHHHHHHH---HTTC-------TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSC
T ss_pred -hHHHHhhh---cCch-------HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhccc
Confidence 22232221 1211 12233444444346789999999974210 111111111 1
Q ss_pred CCCCcEEEEEecChHHHHh--h---C-CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCchH
Q 037851 279 DCRGCKVLLTARDRHVLES--I---G-SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPIA 347 (1053)
Q Consensus 279 ~~~gs~iivTtR~~~v~~~--~---~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPla 347 (1053)
...+..||.||...+.... . . ...+.+...+.++-.++++..........+. ....+++.+.|.|-+
T Consensus 151 ~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~--~~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 151 TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDV--DLEFLAKMTNGFSGA 223 (301)
T ss_dssp TTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSC--CHHHHHHTCSSCCHH
T ss_pred CCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccc--hHHHHHHHcCCCCHH
Confidence 2235678888876543221 1 1 3568899999999999998877532211111 134566778887754
No 198
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.83 E-value=7.2e-05 Score=81.55 Aligned_cols=165 Identities=12% Similarity=0.139 Sum_probs=94.0
Q ss_pred HHHHHHHHhcCC--CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhCCCCCCCCC
Q 037851 161 TLKSLQNALLDP--DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLGMQFDEESD 238 (1053)
Q Consensus 161 ~~~~l~~~l~~~--~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~ 238 (1053)
....+..+...+ ....+.|+|++|+||||||+.+++..... . ..++++++. ++...+...+...
T Consensus 22 a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~-~-~~~~~i~~~------~~~~~~~~~~~~~------ 87 (324)
T 1l8q_A 22 AYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR-G-YRVIYSSAD------DFAQAMVEHLKKG------ 87 (324)
T ss_dssp HHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT-T-CCEEEEEHH------HHHHHHHHHHHHT------
T ss_pred HHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC-C-CEEEEEEHH------HHHHHHHHHHHcC------
Confidence 344444544433 34678999999999999999999987533 1 234555443 2333333332110
Q ss_pred hhHHHHHHHHHHhcCCcEEEEEcCCCCcc---ch-hhhcCCCCC-CCCCcEEEEEecCh---------HHHHhhC-CCcc
Q 037851 239 VPGRARKLYARLQKENKILIILDNIWEDL---DL-EKVGVPSGN-DCRGCKVLLTARDR---------HVLESIG-SKTL 303 (1053)
Q Consensus 239 ~~~~~~~l~~~l~~~~~~LlvlDdv~~~~---~~-~~l~~~~~~-~~~gs~iivTtR~~---------~v~~~~~-~~~~ 303 (1053)
....+...+. +.-+|++||+.... .+ +.+...+.. ...|.+||+||... .+...+. ...+
T Consensus 88 ---~~~~~~~~~~--~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i 162 (324)
T 1l8q_A 88 ---TINEFRNMYK--SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILV 162 (324)
T ss_dssp ---CHHHHHHHHH--TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEE
T ss_pred ---cHHHHHHHhc--CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEE
Confidence 1122333332 36799999996543 11 222111110 12356788887643 2222232 3578
Q ss_pred cccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCchH
Q 037851 304 RIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPIA 347 (1053)
Q Consensus 304 ~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPla 347 (1053)
++.+ +.++...++...+..... .--+++...|++.+ |..-.
T Consensus 163 ~l~~-~~~e~~~il~~~~~~~~~-~l~~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 163 EIEL-DNKTRFKIIKEKLKEFNL-ELRKEVIDYLLENT-KNVRE 203 (324)
T ss_dssp ECCC-CHHHHHHHHHHHHHHTTC-CCCHHHHHHHHHHC-SSHHH
T ss_pred EeCC-CHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHhC-CCHHH
Confidence 9999 999999999887742111 11245677888888 76543
No 199
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.78 E-value=0.00026 Score=78.66 Aligned_cols=174 Identities=18% Similarity=0.275 Sum_probs=103.2
Q ss_pred CCCcccccchHHHHHHHHHHhc----C---------CCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCC
Q 037851 149 GKGYEAFESRMSTLKSLQNALL----D---------PDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDT 215 (1053)
Q Consensus 149 ~~~~~~~~gR~~~~~~l~~~l~----~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~ 215 (1053)
.....++.|-++.+++|.+.+. . ...+-|.++|++|.|||+||+++++.... ..+.++.+.-
T Consensus 177 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~-----~~~~v~~s~l 251 (437)
T 4b4t_L 177 EITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGA-----NFIFSPASGI 251 (437)
T ss_dssp SSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTC-----EEEEEEGGGT
T ss_pred CCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCC-----CEEEEehhhh
Confidence 3445667788887777766543 1 23578999999999999999999998762 1334444432
Q ss_pred cCHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCcc--------c--------hhhhcCCC--C
Q 037851 216 PDIKKVQGELADQLGMQFDEESDVPGRARKLYARLQKENKILIILDNIWEDL--------D--------LEKVGVPS--G 277 (1053)
Q Consensus 216 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--------~--------~~~l~~~~--~ 277 (1053)
.+ ......+..+..+........+.+|++|+++... . ...+...+ .
T Consensus 252 ~s----------------k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~ 315 (437)
T 4b4t_L 252 VD----------------KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGF 315 (437)
T ss_dssp CC----------------SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSS
T ss_pred cc----------------ccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcc
Confidence 11 0011111233444444445789999999997431 0 11121111 1
Q ss_pred CCCCCcEEEEEecChHHHHh----hC--CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCc
Q 037851 278 NDCRGCKVLLTARDRHVLES----IG--SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLP 345 (1053)
Q Consensus 278 ~~~~gs~iivTtR~~~v~~~----~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlP 345 (1053)
....+..||.||...+..+. -| ...+.+..-+.++-.++|+.+........+.. ...|++.+.|.-
T Consensus 316 ~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~d--l~~lA~~t~G~s 387 (437)
T 4b4t_L 316 DNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFD--FEAAVKMSDGFN 387 (437)
T ss_dssp SCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCC--HHHHHHTCCSCC
T ss_pred cCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccC--HHHHHHhCCCCC
Confidence 22345678888876654332 12 45688888888888899987775322211111 456778888764
No 200
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.76 E-value=4.8e-05 Score=94.26 Aligned_cols=156 Identities=12% Similarity=0.191 Sum_probs=88.6
Q ss_pred CCcccccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCC-----CCeEEEEEEcCCcCHHHHHHH
Q 037851 150 KGYEAFESRMSTLKSLQNALLDPDVTITGVYGMGGLGKTTLVKEVARQVKKDKH-----FDEVVFAEVSDTPDIKKVQGE 224 (1053)
Q Consensus 150 ~~~~~~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-----f~~~~wv~~s~~~~~~~~~~~ 224 (1053)
.....++||+++++++++.+......-+.++|.+|+||||+|+.+++....... -..+++++++.-..
T Consensus 167 ~~ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~------- 239 (854)
T 1qvr_A 167 GKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA------- 239 (854)
T ss_dssp TCSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC------------
T ss_pred CCCcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc-------
Confidence 345678999999999999997665667889999999999999999998743111 11234444322110
Q ss_pred HHHHhCCCCCCCCChhHHHHHHHHHHhc-CCcEEEEEcCCCCccc-------hh---hhcCCCCCCCCCcEEEEEecChH
Q 037851 225 LADQLGMQFDEESDVPGRARKLYARLQK-ENKILIILDNIWEDLD-------LE---KVGVPSGNDCRGCKVLLTARDRH 293 (1053)
Q Consensus 225 i~~~l~~~~~~~~~~~~~~~~l~~~l~~-~~~~LlvlDdv~~~~~-------~~---~l~~~~~~~~~gs~iivTtR~~~ 293 (1053)
..............+...+.. +++.+|++|++..... ++ .+...+ . ..+..+|.+|....
T Consensus 240 -------g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l-~-~~~i~~I~at~~~~ 310 (854)
T 1qvr_A 240 -------GAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPAL-A-RGELRLIGATTLDE 310 (854)
T ss_dssp -------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHH-H-TTCCCEEEEECHHH
T ss_pred -------cCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHH-h-CCCeEEEEecCchH
Confidence 000011222334444455543 4689999999975420 11 111111 1 12345666555443
Q ss_pred HHH-----hhC--CCcccccCCCHHHHHHHHHHHh
Q 037851 294 VLE-----SIG--SKTLRIDVLNDEEAWTLFKKMT 321 (1053)
Q Consensus 294 v~~-----~~~--~~~~~l~~L~~~~~~~lf~~~~ 321 (1053)
... ... ...+.+.+++.++..++++...
T Consensus 311 ~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~ 345 (854)
T 1qvr_A 311 YREIEKDPALERRFQPVYVDEPTVEETISILRGLK 345 (854)
T ss_dssp HHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHH
T ss_pred HhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhh
Confidence 311 111 3458999999999999997544
No 201
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.72 E-value=0.00071 Score=74.80 Aligned_cols=172 Identities=13% Similarity=0.173 Sum_probs=101.6
Q ss_pred CcccccchHHHHHHHHHHhc----C---------CCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcC
Q 037851 151 GYEAFESRMSTLKSLQNALL----D---------PDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPD 217 (1053)
Q Consensus 151 ~~~~~~gR~~~~~~l~~~l~----~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 217 (1053)
....+.|-++.+++|.+.+. . ...+-|.++|++|.|||+||+++++.... ..+.++.+.-.+
T Consensus 207 t~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~-----~fi~vs~s~L~s 281 (467)
T 4b4t_H 207 TYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDA-----TFIRVIGSELVQ 281 (467)
T ss_dssp CCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTC-----EEEEEEGGGGCC
T ss_pred CHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCC-----CeEEEEhHHhhc
Confidence 34567788888877766542 1 24678899999999999999999998762 123344332111
Q ss_pred HHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCccc----------------hhhhcCCCC--CC
Q 037851 218 IKKVQGELADQLGMQFDEESDVPGRARKLYARLQKENKILIILDNIWEDLD----------------LEKVGVPSG--ND 279 (1053)
Q Consensus 218 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~----------------~~~l~~~~~--~~ 279 (1053)
......+..+..+........+++|++|+++.... ...+...+. ..
T Consensus 282 ----------------k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 345 (467)
T 4b4t_H 282 ----------------KYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDP 345 (467)
T ss_dssp ----------------CSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCC
T ss_pred ----------------ccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCC
Confidence 00111112334444444457899999999964310 011111111 12
Q ss_pred CCCcEEEEEecChHHHH----hhC--CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCc
Q 037851 280 CRGCKVLLTARDRHVLE----SIG--SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLP 345 (1053)
Q Consensus 280 ~~gs~iivTtR~~~v~~----~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlP 345 (1053)
..+..||.||...+... ..| ...+.+...+.++-.++|+.++.......+.. ...|++.+.|.-
T Consensus 346 ~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvd--l~~LA~~T~GfS 415 (467)
T 4b4t_H 346 RGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIR--WELISRLCPNST 415 (467)
T ss_dssp TTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCC--HHHHHHHCCSCC
T ss_pred CCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCC--HHHHHHHCCCCC
Confidence 23446677776543222 123 67889998999999999988876432222111 456788888864
No 202
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.72 E-value=0.00062 Score=74.46 Aligned_cols=175 Identities=15% Similarity=0.152 Sum_probs=103.2
Q ss_pred CCCCcccccchHHHHHHHHHHhc----C---------CCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcC
Q 037851 148 SGKGYEAFESRMSTLKSLQNALL----D---------PDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSD 214 (1053)
Q Consensus 148 ~~~~~~~~~gR~~~~~~l~~~l~----~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~ 214 (1053)
|.....++.|-++.+++|.+.+. . ...+-|.++|++|.|||.||+++++.... . .+.++.+.
T Consensus 177 p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~--~---fi~v~~s~ 251 (437)
T 4b4t_I 177 PTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSA--T---FLRIVGSE 251 (437)
T ss_dssp CCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTC--E---EEEEESGG
T ss_pred CCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCC--C---EEEEEHHH
Confidence 34455667788888777766542 1 23578999999999999999999998762 1 23333332
Q ss_pred CcCHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCccc----------------hhhhcCCC--
Q 037851 215 TPDIKKVQGELADQLGMQFDEESDVPGRARKLYARLQKENKILIILDNIWEDLD----------------LEKVGVPS-- 276 (1053)
Q Consensus 215 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~----------------~~~l~~~~-- 276 (1053)
-.+ ....+.+..+..+........+.+|++|+++.... ...+...+
T Consensus 252 l~s----------------k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg 315 (437)
T 4b4t_I 252 LIQ----------------KYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDG 315 (437)
T ss_dssp GCC----------------SSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHH
T ss_pred hhh----------------ccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhC
Confidence 111 01111123344444444457889999999864310 11111111
Q ss_pred CCCCCCcEEEEEecChHHHHh----hC--CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCc
Q 037851 277 GNDCRGCKVLLTARDRHVLES----IG--SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLP 345 (1053)
Q Consensus 277 ~~~~~gs~iivTtR~~~v~~~----~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlP 345 (1053)
.....+..||.||-..+..+. -| +..+.+..-+.++-.++|+.+........+. -...|++.+.|.-
T Consensus 316 ~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dv--dl~~LA~~T~GfS 388 (437)
T 4b4t_I 316 FDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDV--NLETLVTTKDDLS 388 (437)
T ss_dssp CCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCC--CHHHHHHHCCSCC
T ss_pred cCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcC--CHHHHHHhCCCCC
Confidence 122345567778876654432 12 4567888888899999998887533222111 1456778887764
No 203
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.70 E-value=1.2e-05 Score=79.51 Aligned_cols=110 Identities=15% Similarity=0.186 Sum_probs=75.9
Q ss_pred cccCCCceeEEeecCc-ccc-----CCCcccccCccCcEEEcCCcccCC--c----cccCCCCCCcEEEccCCCCcc---
Q 037851 523 IFIGTPKLKVLDFTRM-RLL-----SLPSSIHLLTDLRTLCLDGCELED--I----RVIGELKDLEILSLQGSKIEQ--- 587 (1053)
Q Consensus 523 ~~~~~~~Lr~L~l~~~-~~~-----~lp~~i~~l~~Lr~L~L~~~~~~~--~----~~i~~l~~L~~L~l~~~~l~~--- 587 (1053)
.+...+.|+.|++++| .+. .+...+...++|++|+|++|.+.. . ..+...++|++|+|++|.|..
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3566788888999888 765 345566677888888888888765 1 345556788888888888763
Q ss_pred --cchhhhccCCCCeeec--cCcccccccC----cchhcCCccCceeecccccc
Q 037851 588 --LPREIGQLTQLKLLDL--SNCSKLKVIA----PNVLSNLSQLEELYMANCSI 633 (1053)
Q Consensus 588 --lp~~i~~L~~L~~L~l--~~~~~l~~~~----~~~l~~l~~L~~L~l~~~~~ 633 (1053)
+...+...++|++|++ ++ +.+.... ...+...++|++|++++|.+
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~-N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQS-QPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCS-SCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHhCCCceEEEecCCC-CCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 5666777778888888 55 3444321 12244557788888877765
No 204
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.61 E-value=0.00042 Score=76.89 Aligned_cols=175 Identities=13% Similarity=0.168 Sum_probs=102.1
Q ss_pred CCCCcccccchHHHHHHHHHHhc----C---------CCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcC
Q 037851 148 SGKGYEAFESRMSTLKSLQNALL----D---------PDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSD 214 (1053)
Q Consensus 148 ~~~~~~~~~gR~~~~~~l~~~l~----~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~ 214 (1053)
|......+.|-++.+++|.+.+. . ...+-|.++|++|.|||.+|+++++.... ..+.++.+.
T Consensus 176 p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~-----~f~~v~~s~ 250 (434)
T 4b4t_M 176 PTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNA-----TFLKLAAPQ 250 (434)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTC-----EEEEEEGGG
T ss_pred CCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCC-----CEEEEehhh
Confidence 34455678888888888876542 2 23578899999999999999999998762 123344332
Q ss_pred CcCHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCc-------c-----c----hhhhcCCCC-
Q 037851 215 TPDIKKVQGELADQLGMQFDEESDVPGRARKLYARLQKENKILIILDNIWED-------L-----D----LEKVGVPSG- 277 (1053)
Q Consensus 215 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~-------~-----~----~~~l~~~~~- 277 (1053)
-.+ ......+..+..+........+++|++|+++.. . . ...+...+.
T Consensus 251 l~~----------------~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg 314 (434)
T 4b4t_M 251 LVQ----------------MYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDG 314 (434)
T ss_dssp GCS----------------SCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTT
T ss_pred hhh----------------cccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhc
Confidence 111 001111123344444443467899999998532 0 0 111211111
Q ss_pred -CCCCCcEEEEEecChHHHHh----hC--CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCc
Q 037851 278 -NDCRGCKVLLTARDRHVLES----IG--SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLP 345 (1053)
Q Consensus 278 -~~~~gs~iivTtR~~~v~~~----~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlP 345 (1053)
....+..||.||...+..+. -| ...+.+..-+.++-.++|+.+........+. -...|++.+.|.-
T Consensus 315 ~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dv--dl~~lA~~t~G~s 387 (434)
T 4b4t_M 315 FSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDI--NWQELARSTDEFN 387 (434)
T ss_dssp SCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCC--CHHHHHHHCSSCC
T ss_pred cCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcC--CHHHHHHhCCCCC
Confidence 12234567778876644332 12 4578888888888889988776422111111 1456788888764
No 205
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.60 E-value=2.4e-05 Score=73.71 Aligned_cols=46 Identities=15% Similarity=0.177 Sum_probs=34.5
Q ss_pred cccchHHHHHHHHHHhc--CCCeeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 154 AFESRMSTLKSLQNALL--DPDVTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 154 ~~~gR~~~~~~l~~~l~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
.++|+...+.++.+.+. .....-|.|+|..|+|||++|+.+++...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~ 49 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGR 49 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSST
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCC
Confidence 46788888888877664 22334578999999999999999988643
No 206
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.58 E-value=2.4e-05 Score=86.00 Aligned_cols=136 Identities=19% Similarity=0.233 Sum_probs=85.9
Q ss_pred ccccCCCceeEEeecCccccCCCcccccCccCcEEEcCCcccCC--ccccC--CCCCCcEEEccCC--C------Ccccc
Q 037851 522 NIFIGTPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDGCELED--IRVIG--ELKDLEILSLQGS--K------IEQLP 589 (1053)
Q Consensus 522 ~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~--~~~i~--~l~~L~~L~l~~~--~------l~~lp 589 (1053)
.++..+++|+.|.++++.-..+|. + .+.+|+.|++..|.+.. ...+. .+++|++|+|+.+ . +..+.
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred HHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence 445678899999998874335555 4 37889999998888754 34443 7899999988632 1 22222
Q ss_pred hhh--hccCCCCeeeccCcccccccCcchh---cCCccCceeecccccccccccCCcccccCCChhhhcCCCCCCeEEEE
Q 037851 590 REI--GQLTQLKLLDLSNCSKLKVIAPNVL---SNLSQLEELYMANCSIEWEHLGPGIERSNASLDELKNLSRLTSLEIN 664 (1053)
Q Consensus 590 ~~i--~~L~~L~~L~l~~~~~l~~~~~~~l---~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~ 664 (1053)
..+ ..+++|++|++.+|. +.......+ ..+++|++|+++.|.+.-. ........+.++++|+.|+++
T Consensus 244 ~~l~~~~~p~Lr~L~L~~~~-i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~-------G~~~L~~~L~~l~~L~~L~L~ 315 (362)
T 2ra8_A 244 PLFSKDRFPNLKWLGIVDAE-EQNVVVEMFLESDILPQLETMDISAGVLTDE-------GARLLLDHVDKIKHLKFINMK 315 (362)
T ss_dssp GGSCTTTCTTCCEEEEESCT-THHHHHHHHHHCSSGGGCSEEECCSSCCBHH-------HHHHHHTTHHHHTTCSEEECC
T ss_pred HHHhcCCCCCcCEEeCCCCC-CchHHHHHHHhCccCCCCCEEECCCCCCChH-------HHHHHHhhcccCCcceEEECC
Confidence 222 357899999998854 321111112 3578999999988776210 001123344667888888887
Q ss_pred ecc
Q 037851 665 ILD 667 (1053)
Q Consensus 665 ~~~ 667 (1053)
.+.
T Consensus 316 ~n~ 318 (362)
T 2ra8_A 316 YNY 318 (362)
T ss_dssp SBB
T ss_pred CCc
Confidence 664
No 207
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.58 E-value=6.8e-05 Score=77.80 Aligned_cols=77 Identities=30% Similarity=0.423 Sum_probs=45.0
Q ss_pred CCCceeEEeecCccccCC---CcccccCccCcEEEcCCcccCCccccCCCC--CCcEEEccCCCCc-ccc-------hhh
Q 037851 526 GTPKLKVLDFTRMRLLSL---PSSIHLLTDLRTLCLDGCELEDIRVIGELK--DLEILSLQGSKIE-QLP-------REI 592 (1053)
Q Consensus 526 ~~~~Lr~L~l~~~~~~~l---p~~i~~l~~Lr~L~L~~~~~~~~~~i~~l~--~L~~L~l~~~~l~-~lp-------~~i 592 (1053)
+++.|+.|+|++|.+..+ |..+..+++|++|+|++|.+.....++.+. +|++|+|++|.+. .+| ..+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il 247 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIR 247 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHHH
Confidence 456677777777776643 344556667777777777666654444444 6666666666654 233 124
Q ss_pred hccCCCCeee
Q 037851 593 GQLTQLKLLD 602 (1053)
Q Consensus 593 ~~L~~L~~L~ 602 (1053)
..+++|+.||
T Consensus 248 ~~~P~L~~LD 257 (267)
T 3rw6_A 248 ERFPKLLRLD 257 (267)
T ss_dssp HHCTTCCEES
T ss_pred HHCcccCeEC
Confidence 4555555554
No 208
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.57 E-value=4.4e-05 Score=75.12 Aligned_cols=117 Identities=15% Similarity=0.131 Sum_probs=64.7
Q ss_pred hHHHHHHHHHHhcC---CCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhCCCCC
Q 037851 158 RMSTLKSLQNALLD---PDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLGMQFD 234 (1053)
Q Consensus 158 R~~~~~~l~~~l~~---~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~ 234 (1053)
+.+.++.+.+++.+ .....+.|+|+.|+||||||+.+++.......+. +++++ ..++...+.........
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~-~~~~~------~~~~~~~~~~~~~~~~~ 91 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR-GYFFD------TKDLIFRLKHLMDEGKD 91 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC-CCEEE------HHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe-EEEEE------HHHHHHHHHHHhcCchH
Confidence 44555555555532 2357899999999999999999999875323222 23333 34444444443321111
Q ss_pred CCCChhHHHHHHHHHHhcCCcEEEEEcCCCC--ccchh--hhcCCCCC-CCCCcEEEEEecCh
Q 037851 235 EESDVPGRARKLYARLQKENKILIILDNIWE--DLDLE--KVGVPSGN-DCRGCKVLLTARDR 292 (1053)
Q Consensus 235 ~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~--~~~~~--~l~~~~~~-~~~gs~iivTtR~~ 292 (1053)
. .+.+.+. +.-+|||||++. .+.|. .+...+.. ...|..+|+||...
T Consensus 92 ---~------~~~~~~~--~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 92 ---T------KFLKTVL--NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp ---S------HHHHHHH--TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred ---H------HHHHHhc--CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 0 2233342 566899999973 23332 11111110 12467788888743
No 209
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.54 E-value=0.001 Score=81.65 Aligned_cols=156 Identities=15% Similarity=0.225 Sum_probs=94.5
Q ss_pred CcccccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCC----CCeEEE-EEEcCCcCHHHHHHHH
Q 037851 151 GYEAFESRMSTLKSLQNALLDPDVTITGVYGMGGLGKTTLVKEVARQVKKDKH----FDEVVF-AEVSDTPDIKKVQGEL 225 (1053)
Q Consensus 151 ~~~~~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----f~~~~w-v~~s~~~~~~~~~~~i 225 (1053)
....++||+.+++++++.|......-+.++|.+|+||||+|+.+++....... ....+| ++.+.-
T Consensus 184 ~~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l---------- 253 (758)
T 1r6b_X 184 GIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL---------- 253 (758)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC------------
T ss_pred CCCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH----------
Confidence 44578999999999999998666677889999999999999999988643211 122222 211110
Q ss_pred HHHhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCc----------cchhhhcCCCCCCCCCcEEEEEecChHHH
Q 037851 226 ADQLGMQFDEESDVPGRARKLYARLQKENKILIILDNIWED----------LDLEKVGVPSGNDCRGCKVLLTARDRHVL 295 (1053)
Q Consensus 226 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~----------~~~~~l~~~~~~~~~gs~iivTtR~~~v~ 295 (1053)
+. ........+.....+.+.+...++.+|++||++.. .+...+...+... .+.++|.+|......
T Consensus 254 ---~~-~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~-~~~~~I~at~~~~~~ 328 (758)
T 1r6b_X 254 ---LA-GTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTYQEFS 328 (758)
T ss_dssp ----C-CCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSS-CCCEEEEEECHHHHH
T ss_pred ---hc-cccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhC-CCeEEEEEeCchHHh
Confidence 00 01111223344455555555456799999999754 1111222222222 345677777654432
Q ss_pred Hhh--------CCCcccccCCCHHHHHHHHHHHh
Q 037851 296 ESI--------GSKTLRIDVLNDEEAWTLFKKMT 321 (1053)
Q Consensus 296 ~~~--------~~~~~~l~~L~~~~~~~lf~~~~ 321 (1053)
... ....+.+.+.+.++..+++....
T Consensus 329 ~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 329 NIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp CCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred hhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 111 12357899999999988887654
No 210
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.53 E-value=0.00023 Score=87.07 Aligned_cols=149 Identities=12% Similarity=0.209 Sum_probs=87.2
Q ss_pred CcccccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCC----CCe-EEEEEEcCCcCHHHHHHHH
Q 037851 151 GYEAFESRMSTLKSLQNALLDPDVTITGVYGMGGLGKTTLVKEVARQVKKDKH----FDE-VVFAEVSDTPDIKKVQGEL 225 (1053)
Q Consensus 151 ~~~~~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----f~~-~~wv~~s~~~~~~~~~~~i 225 (1053)
....++||+++++++.+.+......-+.++|++|+|||++|+.+++....... ... .+.++.
T Consensus 178 ~ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~------------- 244 (758)
T 3pxi_A 178 SLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM------------- 244 (758)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------------
T ss_pred CCCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc-------------
Confidence 34578999999999999997665566889999999999999999998642110 011 121222
Q ss_pred HHHhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCccchhhhcCCCCCCCCCcEEEEEecChHHHHh------h-
Q 037851 226 ADQLGMQFDEESDVPGRARKLYARLQKENKILIILDNIWEDLDLEKVGVPSGNDCRGCKVLLTARDRHVLES------I- 298 (1053)
Q Consensus 226 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~~------~- 298 (1053)
+....+ ..+.....+.......++.+|++| ...+....+...+. ....++|.||........ .
T Consensus 245 ----g~~~~G--~~e~~l~~~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~al~ 314 (758)
T 3pxi_A 245 ----GTKYRG--EFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALE 314 (758)
T ss_dssp --------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHH
T ss_pred ----cccccc--hHHHHHHHHHHHHHhcCCEEEEEc--CchhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccHHHH
Confidence 100000 111223444455545678899999 22222222333322 224567766665542111 1
Q ss_pred -CCCcccccCCCHHHHHHHHHHHhC
Q 037851 299 -GSKTLRIDVLNDEEAWTLFKKMTG 322 (1053)
Q Consensus 299 -~~~~~~l~~L~~~~~~~lf~~~~~ 322 (1053)
....+.+...+.++..++++....
T Consensus 315 rRf~~i~v~~p~~~~~~~il~~~~~ 339 (758)
T 3pxi_A 315 RRFQPIQVDQPSVDESIQILQGLRD 339 (758)
T ss_dssp HSEEEEECCCCCHHHHHHHHHHTTT
T ss_pred hhCcEEEeCCCCHHHHHHHHHHHHH
Confidence 134689999999999999987654
No 211
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.51 E-value=0.0022 Score=71.16 Aligned_cols=175 Identities=17% Similarity=0.208 Sum_probs=98.0
Q ss_pred CCCCcccccchHHHHHHHHHHhc----C---------CCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcC
Q 037851 148 SGKGYEAFESRMSTLKSLQNALL----D---------PDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSD 214 (1053)
Q Consensus 148 ~~~~~~~~~gR~~~~~~l~~~l~----~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~ 214 (1053)
|.....++.|-++.+++|.+.+. . ...+-|.++|++|+|||++|+++++.... ..+.++.+.
T Consensus 167 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~-----~~~~v~~~~ 241 (428)
T 4b4t_K 167 PDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKA-----AFIRVNGSE 241 (428)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTC-----EEEEEEGGG
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCC-----CeEEEecch
Confidence 34455677888888887766543 1 23567899999999999999999998762 233444433
Q ss_pred CcCHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCcc------------c----hhhhcCCCC-
Q 037851 215 TPDIKKVQGELADQLGMQFDEESDVPGRARKLYARLQKENKILIILDNIWEDL------------D----LEKVGVPSG- 277 (1053)
Q Consensus 215 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~------------~----~~~l~~~~~- 277 (1053)
-.+ ......+..+..+........+.+|++|+++... . ...+...+.
T Consensus 242 l~~----------------~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg 305 (428)
T 4b4t_K 242 FVH----------------KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDG 305 (428)
T ss_dssp TCC----------------SSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHH
T ss_pred hhc----------------cccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhC
Confidence 211 0011112333444444445778999999985320 0 111111111
Q ss_pred -CCCCCcEEEEEecChHHHH----hhC--CCcccccCC-CHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCc
Q 037851 278 -NDCRGCKVLLTARDRHVLE----SIG--SKTLRIDVL-NDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLP 345 (1053)
Q Consensus 278 -~~~~gs~iivTtR~~~v~~----~~~--~~~~~l~~L-~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlP 345 (1053)
....|..||.||...+..+ .-| ...+++..+ +.++-..+|+.+.......++. -...|++.+.|.-
T Consensus 306 ~~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~--dl~~lA~~t~G~s 379 (428)
T 4b4t_K 306 FDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEA--DLDSLIIRNDSLS 379 (428)
T ss_dssp SCSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTC--CHHHHHHHTTTCC
T ss_pred CCCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCccc--CHHHHHHHCCCCC
Confidence 1234556777887554222 122 456777655 4555566777666422211111 1456778888764
No 212
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.48 E-value=0.00034 Score=74.65 Aligned_cols=144 Identities=16% Similarity=0.099 Sum_probs=89.0
Q ss_pred HHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHhhhc--CCCCeEEEEEEcC-CcCHHHHHHHHHHHhCCCCCC
Q 037851 159 MSTLKSLQNALLDPDVTITGVYGMGGLGKTTLVKEVARQVKKD--KHFDEVVFAEVSD-TPDIKKVQGELADQLGMQFDE 235 (1053)
Q Consensus 159 ~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~--~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~ 235 (1053)
++.++.+...+..++.+...++|+.|+||||+|+.+++..... .+.+ ..+++.+. ...+.++ +++.+.+.....
T Consensus 3 ~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d-~~~l~~~~~~~~id~i-r~li~~~~~~p~- 79 (305)
T 2gno_A 3 KDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASD-VLEIDPEGENIGIDDI-RTIKDFLNYSPE- 79 (305)
T ss_dssp -CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT-EEEECCSSSCBCHHHH-HHHHHHHTSCCS-
T ss_pred HHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCC-EEEEcCCcCCCCHHHH-HHHHHHHhhccc-
Confidence 4456677777776667889999999999999999999863211 2333 34455442 3333333 334444332110
Q ss_pred CCChhHHHHHHHHHHhcCCcEEEEEcCCCCc--cchhhhcCCCCCCCCCcEEEEEecCh-HHHHhhCCCcccccCCCHHH
Q 037851 236 ESDVPGRARKLYARLQKENKILIILDNIWED--LDLEKVGVPSGNDCRGCKVLLTARDR-HVLESIGSKTLRIDVLNDEE 312 (1053)
Q Consensus 236 ~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtR~~-~v~~~~~~~~~~l~~L~~~~ 312 (1053)
.+++-++|+|+++.. ...+.+...+-...+.+.+|++|.++ .+......+.+++.++++++
T Consensus 80 ----------------~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR~~~f~~l~~~~ 143 (305)
T 2gno_A 80 ----------------LYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSRVFRVVVNVPKE 143 (305)
T ss_dssp ----------------SSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCHH
T ss_pred ----------------cCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHceeEeCCCCCHHH
Confidence 246778999999765 23344433332223467777777554 23333333389999999999
Q ss_pred HHHHHHHHh
Q 037851 313 AWTLFKKMT 321 (1053)
Q Consensus 313 ~~~lf~~~~ 321 (1053)
..+.+.+.+
T Consensus 144 i~~~L~~~~ 152 (305)
T 2gno_A 144 FRDLVKEKI 152 (305)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998876
No 213
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.46 E-value=0.00098 Score=69.70 Aligned_cols=177 Identities=17% Similarity=0.180 Sum_probs=94.5
Q ss_pred CCcccccchHHHHHHHHHH---hcC---------CCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcC
Q 037851 150 KGYEAFESRMSTLKSLQNA---LLD---------PDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPD 217 (1053)
Q Consensus 150 ~~~~~~~gR~~~~~~l~~~---l~~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 217 (1053)
.....++|.+..++++.+. +.. ...+-+.|+|+.|+||||+|+.+++... .. .+.++.+.-.+
T Consensus 9 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~--~~---~~~i~~~~~~~ 83 (257)
T 1lv7_A 9 TTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK--VP---FFTISGSDFVE 83 (257)
T ss_dssp CCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHT--CC---EEEECSCSSTT
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC--CC---EEEEeHHHHHH
Confidence 3455678888777666543 322 1234588999999999999999998764 12 23333222111
Q ss_pred HHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCcc----------------chhhhcCCCC--CC
Q 037851 218 IKKVQGELADQLGMQFDEESDVPGRARKLYARLQKENKILIILDNIWEDL----------------DLEKVGVPSG--ND 279 (1053)
Q Consensus 218 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~----------------~~~~l~~~~~--~~ 279 (1053)
.. ..........+.+......+.++++|+++... ....+...+. ..
T Consensus 84 --------------~~--~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 147 (257)
T 1lv7_A 84 --------------MF--VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG 147 (257)
T ss_dssp --------------SC--CCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCS
T ss_pred --------------Hh--hhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCccc
Confidence 00 00111233344444444567899999984321 0111111110 12
Q ss_pred CCCcEEEEEecChHHHH-hh---C--CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCC-CchHHH
Q 037851 280 CRGCKVLLTARDRHVLE-SI---G--SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGG-LPIAIV 349 (1053)
Q Consensus 280 ~~gs~iivTtR~~~v~~-~~---~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~G-lPlai~ 349 (1053)
..+..||.||...+... .. + ...+.+...+.++-.++++.+.....-.++. ....+++.+.| .+--+.
T Consensus 148 ~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~--~~~~la~~~~G~~~~dl~ 222 (257)
T 1lv7_A 148 NEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDI--DAAIIARGTPGFSGADLA 222 (257)
T ss_dssp SSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC--CHHHHHHTCTTCCHHHHH
T ss_pred CCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccc--cHHHHHHHcCCCCHHHHH
Confidence 23556777777654221 11 1 3456777888888888888776432211111 13456777777 554444
No 214
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.42 E-value=3.9e-05 Score=79.60 Aligned_cols=60 Identities=28% Similarity=0.476 Sum_probs=28.7
Q ss_pred CCCCCcEEEccCCCCccc---chhhhccCCCCeeeccCcccccccCcchhcCCc--cCceeecccccc
Q 037851 571 ELKDLEILSLQGSKIEQL---PREIGQLTQLKLLDLSNCSKLKVIAPNVLSNLS--QLEELYMANCSI 633 (1053)
Q Consensus 571 ~l~~L~~L~l~~~~l~~l---p~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~l~--~L~~L~l~~~~~ 633 (1053)
++++|++|+|++|.+..+ |..+.++++|++|+|++ +.+..+. .+..+. +|++|++.+|.+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~-N~i~~~~--~l~~l~~l~L~~L~L~~Npl 232 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG-NELKSER--ELDKIKGLKLEELWLDGNSL 232 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTT-SCCCSGG--GGGGGTTSCCSEEECTTSTT
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCC-CccCCch--hhhhcccCCcceEEccCCcC
Confidence 345555555555544432 23444555555555555 3344331 123333 555555555554
No 215
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.38 E-value=0.0015 Score=74.52 Aligned_cols=176 Identities=14% Similarity=0.198 Sum_probs=100.0
Q ss_pred cccccchHHHHHHHHHHhc-------------CCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCH
Q 037851 152 YEAFESRMSTLKSLQNALL-------------DPDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDI 218 (1053)
Q Consensus 152 ~~~~~gR~~~~~~l~~~l~-------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 218 (1053)
...++|.+..++++.+++. ....+-|.|+|++|+|||++|+.+++... . ..+.++++.
T Consensus 203 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~--~---~fv~vn~~~---- 273 (489)
T 3hu3_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG--A---FFFLINGPE---- 273 (489)
T ss_dssp GGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCS--S---EEEEEEHHH----
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhC--C---CEEEEEchH----
Confidence 4568899998888877664 13345789999999999999999988753 1 223343221
Q ss_pred HHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCcc-------------chhhhcCCCC--CCCCCc
Q 037851 219 KKVQGELADQLGMQFDEESDVPGRARKLYARLQKENKILIILDNIWEDL-------------DLEKVGVPSG--NDCRGC 283 (1053)
Q Consensus 219 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~-------------~~~~l~~~~~--~~~~gs 283 (1053)
+ ...+ ..........+.+....+++.+|+||+++... ....+...+. ....+.
T Consensus 274 --l----~~~~------~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v 341 (489)
T 3hu3_A 274 --I----MSKL------AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHV 341 (489)
T ss_dssp --H----HTSC------TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCE
T ss_pred --h----hhhh------cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCce
Confidence 1 1100 01111222333333335678899999994220 0111111111 122345
Q ss_pred EEEEEecChHHHH-hh---C--CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCC-chHHHH
Q 037851 284 KVLLTARDRHVLE-SI---G--SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGL-PIAIVT 350 (1053)
Q Consensus 284 ~iivTtR~~~v~~-~~---~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~Gl-Plai~~ 350 (1053)
+||.||....... .. + ...+.+...+.++-.++++.++.......+ ....++++.+.|. +-.+..
T Consensus 342 ~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~--~~l~~la~~t~g~s~~dL~~ 413 (489)
T 3hu3_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADD--VDLEQVANETHGHVGADLAA 413 (489)
T ss_dssp EEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTT--CCHHHHHHTCTTCCHHHHHH
T ss_pred EEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcch--hhHHHHHHHccCCcHHHHHH
Confidence 6777777653211 11 1 346889999999999999988753221111 1135677777775 433433
No 216
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.31 E-value=0.0029 Score=68.89 Aligned_cols=172 Identities=18% Similarity=0.155 Sum_probs=93.1
Q ss_pred CcccccchHHHHHHHHHHhcC-----CCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHH
Q 037851 151 GYEAFESRMSTLKSLQNALLD-----PDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGEL 225 (1053)
Q Consensus 151 ~~~~~~gR~~~~~~l~~~l~~-----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 225 (1053)
....++|++..++.+...+.. .....+.++|+.|+||||||+.++..... .| ...+..-.....++
T Consensus 23 ~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~--~~---~~~sg~~~~~~~~l---- 93 (334)
T 1in4_A 23 SLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQT--NI---HVTSGPVLVKQGDM---- 93 (334)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTC--CE---EEEETTTCCSHHHH----
T ss_pred cHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCC--CE---EEEechHhcCHHHH----
Confidence 445678888777776655532 23467999999999999999999998742 11 11111100111111
Q ss_pred HHHhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCcc--chhhhcC---CCC------CC---------CCCcEE
Q 037851 226 ADQLGMQFDEESDVPGRARKLYARLQKENKILIILDNIWEDL--DLEKVGV---PSG------ND---------CRGCKV 285 (1053)
Q Consensus 226 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--~~~~l~~---~~~------~~---------~~gs~i 285 (1053)
..+...+ .++-++++|++.... ..+.+.. ... .+ -+...+
T Consensus 94 ------------------~~~~~~~--~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~l 153 (334)
T 1in4_A 94 ------------------AAILTSL--ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTL 153 (334)
T ss_dssp ------------------HHHHHHC--CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEE
T ss_pred ------------------HHHHHHc--cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEE
Confidence 1111111 234567778875431 1111110 000 00 011223
Q ss_pred E-EEecChHHHHhhC---CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCchHHHHHH
Q 037851 286 L-LTARDRHVLESIG---SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPIAIVTLA 352 (1053)
Q Consensus 286 i-vTtR~~~v~~~~~---~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~~ 352 (1053)
+ .|++...+..... ...+.+++.+.++-.+++++.+.... ..--++.+..|+++++|.|-.+..+.
T Consensus 154 i~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~-~~~~~~~~~~ia~~~~G~~R~a~~ll 223 (334)
T 1in4_A 154 VGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMD-VEIEDAAAEMIAKRSRGTPRIAIRLT 223 (334)
T ss_dssp EEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT-CCBCHHHHHHHHHTSTTCHHHHHHHH
T ss_pred EEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcC-CCcCHHHHHHHHHhcCCChHHHHHHH
Confidence 3 3444332222221 23578999999999999988764211 11224668999999999997554433
No 217
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.31 E-value=0.00037 Score=75.39 Aligned_cols=105 Identities=13% Similarity=0.188 Sum_probs=60.0
Q ss_pred cccchHHHHHHHHHHhcCC---------CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHH
Q 037851 154 AFESRMSTLKSLQNALLDP---------DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGE 224 (1053)
Q Consensus 154 ~~~gR~~~~~~l~~~l~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 224 (1053)
.++|.+..++.+...+... ....+.++|++|+|||++|+.+++..... -...+.++++.......
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~--~~~~~~~~~~~~~~~~~---- 91 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT--EEAMIRIDMTEYMEKHA---- 91 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSC--GGGEEEEEGGGCCSTTH----
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCC--CcceEEeeccccccccc----
Confidence 4678888888777666421 13579999999999999999999986521 12345566654332211
Q ss_pred HHHHhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCc
Q 037851 225 LADQLGMQFDEESDVPGRARKLYARLQKENKILIILDNIWED 266 (1053)
Q Consensus 225 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~ 266 (1053)
..+.++......... ....+...+.....-+|+||+++..
T Consensus 92 ~~~l~g~~~~~~~~~--~~~~~~~~~~~~~~~vl~lDEi~~l 131 (311)
T 4fcw_A 92 VSRLIGAPPGYVGYE--EGGQLTEAVRRRPYSVILFDAIEKA 131 (311)
T ss_dssp HHHHHCCCTTSTTTT--TCCHHHHHHHHCSSEEEEEETGGGS
T ss_pred HHHhcCCCCcccccc--ccchHHHHHHhCCCeEEEEeChhhc
Confidence 111223221111100 0012333343345679999999754
No 218
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.28 E-value=0.0013 Score=70.98 Aligned_cols=46 Identities=17% Similarity=0.235 Sum_probs=36.9
Q ss_pred cccchHHHHHHHHHHhcC--------------CCeeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 154 AFESRMSTLKSLQNALLD--------------PDVTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 154 ~~~gR~~~~~~l~~~l~~--------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
.++|++..++.+...+.. .....+.++|++|+|||++|+.+++...
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 478998888888776642 2345688999999999999999998874
No 219
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.26 E-value=0.0026 Score=71.90 Aligned_cols=172 Identities=18% Similarity=0.231 Sum_probs=98.1
Q ss_pred CcccccchHHHHHHHHHHh---cCC---------CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCH
Q 037851 151 GYEAFESRMSTLKSLQNAL---LDP---------DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDI 218 (1053)
Q Consensus 151 ~~~~~~gR~~~~~~l~~~l---~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 218 (1053)
....++|.++.++++.+.. ..+ -.+-|.|+|++|+|||+||+.+++.... . .+.++.+.-...
T Consensus 14 ~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~--~---f~~is~~~~~~~ 88 (476)
T 2ce7_A 14 TFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANV--P---FFHISGSDFVEL 88 (476)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTC--C---EEEEEGGGTTTC
T ss_pred CHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCC--C---eeeCCHHHHHHH
Confidence 3456788887766665443 221 1345889999999999999999987642 2 233443332110
Q ss_pred HHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCcc----------------chhhhcCCCC--CCC
Q 037851 219 KKVQGELADQLGMQFDEESDVPGRARKLYARLQKENKILIILDNIWEDL----------------DLEKVGVPSG--NDC 280 (1053)
Q Consensus 219 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~----------------~~~~l~~~~~--~~~ 280 (1053)
+ ..........+........+.+|++|+++... ....+...+. ...
T Consensus 89 ----------~------~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~ 152 (476)
T 2ce7_A 89 ----------F------VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSK 152 (476)
T ss_dssp ----------C------TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGG
T ss_pred ----------H------hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCC
Confidence 0 00011223334444434678999999996421 1112211111 112
Q ss_pred CCcEEEEEecChHHHHh--h--C--CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCc
Q 037851 281 RGCKVLLTARDRHVLES--I--G--SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLP 345 (1053)
Q Consensus 281 ~gs~iivTtR~~~v~~~--~--~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlP 345 (1053)
.+..||.||...+.... . + ...+.+...+.++-.++++.++....-.++. + ...|++.+.|..
T Consensus 153 ~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v-~-l~~la~~t~G~s 221 (476)
T 2ce7_A 153 EGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDV-N-LEIIAKRTPGFV 221 (476)
T ss_dssp GTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC-C-HHHHHHTCTTCC
T ss_pred CCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchh-h-HHHHHHhcCCCc
Confidence 35678888877654331 1 2 3477888888888888888777532211111 1 345888888887
No 220
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.21 E-value=0.00015 Score=71.56 Aligned_cols=116 Identities=13% Similarity=0.109 Sum_probs=84.5
Q ss_pred CcccccCccCcEEEcCCc-ccCC------ccccCCCCCCcEEEccCCCCc-----ccchhhhccCCCCeeeccCcccccc
Q 037851 544 PSSIHLLTDLRTLCLDGC-ELED------IRVIGELKDLEILSLQGSKIE-----QLPREIGQLTQLKLLDLSNCSKLKV 611 (1053)
Q Consensus 544 p~~i~~l~~Lr~L~L~~~-~~~~------~~~i~~l~~L~~L~l~~~~l~-----~lp~~i~~L~~L~~L~l~~~~~l~~ 611 (1053)
...+...+.|++|+|++| .+.. ...+...++|++|+|++|.+. .+...+...++|++|+|++| .+..
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~ 107 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-FISG 107 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC-cCCH
Confidence 345667889999999999 8765 255677899999999999986 35666777889999999995 4544
Q ss_pred cC----cchhcCCccCceeec--ccccccccccCCcccccCCChhhhcCCCCCCeEEEEecc
Q 037851 612 IA----PNVLSNLSQLEELYM--ANCSIEWEHLGPGIERSNASLDELKNLSRLTSLEINILD 667 (1053)
Q Consensus 612 ~~----~~~l~~l~~L~~L~l--~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~i~~~~ 667 (1053)
.. ...+...++|++|++ .+|.+... ........+...++|+.|+++++.
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~-------g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQPLGNN-------VEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSCCCHH-------HHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCCCCHH-------HHHHHHHHHHhCCCcCEEeccCCC
Confidence 21 234667789999999 77876211 011233456677889999987765
No 221
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.20 E-value=0.00027 Score=74.40 Aligned_cols=61 Identities=8% Similarity=0.069 Sum_probs=38.9
Q ss_pred ccccchHHHHHHHHHHhc--CCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCC
Q 037851 153 EAFESRMSTLKSLQNALL--DPDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDT 215 (1053)
Q Consensus 153 ~~~~gR~~~~~~l~~~l~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~ 215 (1053)
..++|+...+.++.+.+. ......|.|+|..|+|||++|+.+++..... -...+.++++..
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~--~~~~~~v~~~~~ 68 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRW--QGPFISLNCAAL 68 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTT--TSCEEEEEGGGS
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCcc--CCCeEEEecCCC
Confidence 457788888777766553 1223567899999999999999999865421 123455665543
No 222
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.17 E-value=0.00051 Score=68.84 Aligned_cols=115 Identities=15% Similarity=0.127 Sum_probs=62.3
Q ss_pred HHHHHHHHHHhcCC----CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhCCCCC
Q 037851 159 MSTLKSLQNALLDP----DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLGMQFD 234 (1053)
Q Consensus 159 ~~~~~~l~~~l~~~----~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~ 234 (1053)
...++.+.+++... ..+.+.|+|++|+|||+||+.+++..... ...++|++++ ++...+......
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~--~~~~~~~~~~------~~~~~~~~~~~~--- 103 (202)
T 2w58_A 35 IKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKR--NVSSLIVYVP------ELFRELKHSLQD--- 103 (202)
T ss_dssp HHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTT--TCCEEEEEHH------HHHHHHHHC------
T ss_pred HHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEhH------HHHHHHHHHhcc---
Confidence 34455555665422 12688999999999999999999987632 3345666543 344444332211
Q ss_pred CCCChhHHHHHHHHHHhcCCcEEEEEcCCCCc--cchhh--hcC-CCCC-CCCCcEEEEEecCh
Q 037851 235 EESDVPGRARKLYARLQKENKILIILDNIWED--LDLEK--VGV-PSGN-DCRGCKVLLTARDR 292 (1053)
Q Consensus 235 ~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~--~~~~~--l~~-~~~~-~~~gs~iivTtR~~ 292 (1053)
... ..+...+.+ .-+|||||++.. ..|.. +.. .+.. ...+.++|+||...
T Consensus 104 --~~~----~~~~~~~~~--~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~ 159 (202)
T 2w58_A 104 --QTM----NEKLDYIKK--VPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFD 159 (202)
T ss_dssp --CCC----HHHHHHHHH--SSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSC
T ss_pred --chH----HHHHHHhcC--CCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCC
Confidence 111 222333432 239999999653 33321 211 1100 12355788888743
No 223
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.06 E-value=0.00024 Score=75.03 Aligned_cols=150 Identities=17% Similarity=0.127 Sum_probs=79.0
Q ss_pred cccccchHHHHHHHHHHhc---C---------CCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHH
Q 037851 152 YEAFESRMSTLKSLQNALL---D---------PDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIK 219 (1053)
Q Consensus 152 ~~~~~gR~~~~~~l~~~l~---~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 219 (1053)
...++|.+..++++.+.+. . ...+-+.|+|++|+|||++|+.+++.... .| +.+..+.-.+
T Consensus 10 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~--~~---~~v~~~~~~~-- 82 (268)
T 2r62_A 10 FKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHV--PF---FSMGGSSFIE-- 82 (268)
T ss_dssp STTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTC--CC---CCCCSCTTTT--
T ss_pred HHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCC--CE---EEechHHHHH--
Confidence 3456676655555544332 1 12334789999999999999999998652 22 1111111100
Q ss_pred HHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCcc-----------------chhhhcCCCCC---C
Q 037851 220 KVQGELADQLGMQFDEESDVPGRARKLYARLQKENKILIILDNIWEDL-----------------DLEKVGVPSGN---D 279 (1053)
Q Consensus 220 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~-----------------~~~~l~~~~~~---~ 279 (1053)
..... ..... ..+.+.....++.+|++||++... ....+...+.. .
T Consensus 83 --------~~~~~--~~~~~----~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 148 (268)
T 2r62_A 83 --------MFVGL--GASRV----RDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSE 148 (268)
T ss_dssp --------SCSSS--CSSSS----STTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCS
T ss_pred --------hhcch--HHHHH----HHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccC
Confidence 00000 00111 112222223567899999996431 12223222221 1
Q ss_pred CCCcEEEEEecChHHHH-h---h-C-CCcccccCCCHHHHHHHHHHHhC
Q 037851 280 CRGCKVLLTARDRHVLE-S---I-G-SKTLRIDVLNDEEAWTLFKKMTG 322 (1053)
Q Consensus 280 ~~gs~iivTtR~~~v~~-~---~-~-~~~~~l~~L~~~~~~~lf~~~~~ 322 (1053)
.....||.||....... . . . ...+.+...+.++-.++++..+.
T Consensus 149 ~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~ 197 (268)
T 2r62_A 149 NAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIK 197 (268)
T ss_dssp CSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTS
T ss_pred CCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHh
Confidence 12346777777654221 1 1 1 35678888888888888877764
No 224
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.05 E-value=0.00048 Score=84.33 Aligned_cols=147 Identities=14% Similarity=0.210 Sum_probs=82.4
Q ss_pred ccccchHHHHHHHHHHhcC-------CC--eeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHH
Q 037851 153 EAFESRMSTLKSLQNALLD-------PD--VTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQG 223 (1053)
Q Consensus 153 ~~~~gR~~~~~~l~~~l~~-------~~--~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 223 (1053)
..++|.+..++.+.+.+.. +. ...+.++|++|+|||++|+.+++... ..-...+.++++...+....
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~--~~~~~~i~i~~s~~~~~~~~-- 566 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIF--GDEESMIRIDMSEYMEKHST-- 566 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHH--SCTTCEEEEEGGGGCSSCCC--
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc--CCCcceEEEechhccccccc--
Confidence 3578999888888777651 11 23699999999999999999999864 22234556666543220000
Q ss_pred HHHHHhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCcc--chhhhcCCC-----CC------CCCCcEEEEEec
Q 037851 224 ELADQLGMQFDEESDVPGRARKLYARLQKENKILIILDNIWEDL--DLEKVGVPS-----GN------DCRGCKVLLTAR 290 (1053)
Q Consensus 224 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~~-----~~------~~~gs~iivTtR 290 (1053)
. ...+...+.....-+|+||+++... ....+...+ .. .....+||+||.
T Consensus 567 ------------~------~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn 628 (758)
T 3pxi_A 567 ------------S------GGQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSN 628 (758)
T ss_dssp ------------C---------CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEES
T ss_pred ------------c------cchhhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCC
Confidence 0 0111122222344589999997542 111111111 00 123568899987
Q ss_pred C-----hHH----HHh-----hC--CCcccccCCCHHHHHHHHHHHh
Q 037851 291 D-----RHV----LES-----IG--SKTLRIDVLNDEEAWTLFKKMT 321 (1053)
Q Consensus 291 ~-----~~v----~~~-----~~--~~~~~l~~L~~~~~~~lf~~~~ 321 (1053)
. ..+ ... .. ...+.+.+++.++...++....
T Consensus 629 ~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 629 VGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp SSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence 3 111 111 12 3578899999999888876654
No 225
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.98 E-value=0.0007 Score=72.48 Aligned_cols=46 Identities=15% Similarity=0.220 Sum_probs=35.6
Q ss_pred cccchHHHHHHHHHHhc--CCCeeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 154 AFESRMSTLKSLQNALL--DPDVTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 154 ~~~gR~~~~~~l~~~l~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
.++|+...+.++.+.+. ......|.|+|.+|+|||++|+.+++...
T Consensus 3 ~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~ 50 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSA 50 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSS
T ss_pred CcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCc
Confidence 47788888887776664 23335677999999999999999998653
No 226
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.97 E-value=0.012 Score=65.77 Aligned_cols=265 Identities=17% Similarity=0.170 Sum_probs=146.8
Q ss_pred CCCcccccCCCceeEEeecCccccCCCc-ccccCccCcEEEcCCc------------ccC-----------CccccCCCC
Q 037851 518 KIPDNIFIGTPKLKVLDFTRMRLLSLPS-SIHLLTDLRTLCLDGC------------ELE-----------DIRVIGELK 573 (1053)
Q Consensus 518 ~~~~~~~~~~~~Lr~L~l~~~~~~~lp~-~i~~l~~Lr~L~L~~~------------~~~-----------~~~~i~~l~ 573 (1053)
.+.+..|.++.+|+.+++..+ ++.+++ .+..+..|+.+.+..+ .+. ....+.++.
T Consensus 84 ~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~~~~~~~~i~~~aF~~c~ 162 (394)
T 4fs7_A 84 EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEITIPEGVTVIGDEAFATCE 162 (394)
T ss_dssp EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEECCTTCCEECTTTTTTCT
T ss_pred CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeecccccccccCccccccchhhhcccC
Confidence 366777888999999988654 444433 4555666655544322 111 124577889
Q ss_pred CCcEEEccCCCCcccch-hhhccCCCCeeeccCcccccccCcchhcCCccCceeecccccccccccCCcccccCCChhhh
Q 037851 574 DLEILSLQGSKIEQLPR-EIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEHLGPGIERSNASLDEL 652 (1053)
Q Consensus 574 ~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L 652 (1053)
+|+.+.+..+ +..++. .+..+.+|+.+.+.. .+..+....+.++..|+.+.+..+.... . ...
T Consensus 163 ~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~--~~~~I~~~~F~~~~~L~~i~~~~~~~~i----------~---~~~ 226 (394)
T 4fs7_A 163 SLEYVSLPDS-METLHNGLFSGCGKLKSIKLPR--NLKIIRDYCFAECILLENMEFPNSLYYL----------G---DFA 226 (394)
T ss_dssp TCCEEECCTT-CCEECTTTTTTCTTCCBCCCCT--TCCEECTTTTTTCTTCCBCCCCTTCCEE----------C---TTT
T ss_pred CCcEEecCCc-cceeccccccCCCCceEEEcCC--CceEeCchhhccccccceeecCCCceEe----------e---hhh
Confidence 9999999765 455654 467899999999976 4777777778899999988876543210 0 011
Q ss_pred cCCCCCCeEEEEeccCCCCCCccc--cccCceEEEEEcccCCCCCcccccceeeeccCCc-cccccccccCccceeeccc
Q 037851 653 KNLSRLTSLEINILDAGILPSGFF--SRKLKRYRIVVGFQWAPFDKYKTRRTLKLKLNSR-ICLEEWRGMKNVEYLRLDE 729 (1053)
Q Consensus 653 ~~l~~L~~L~i~~~~~~~~~~~~~--~~~L~~l~l~~~~~~~~~~~~~~l~~l~l~~~~~-~~~~~~~~l~~L~~L~L~~ 729 (1053)
....+|+.+.+... ...+....+ ...++.+.+ ..... .....+..+.+++.+....
T Consensus 227 ~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~--------------------~~~~~~i~~~~F~~~~~l~~~~~~~ 285 (394)
T 4fs7_A 227 LSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISI--------------------QNNKLRIGGSLFYNCSGLKKVIYGS 285 (394)
T ss_dssp TTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEE--------------------CCTTCEECSCTTTTCTTCCEEEECS
T ss_pred cccCCCceEEECCC-ceecccccccccccceeEEc--------------------CCCcceeeccccccccccceeccCc
Confidence 12345666655321 111111111 123333332 11100 0001111444555544432
Q ss_pred cCCcccccccccccccccccEEEeecCCCceeecCCcccccCcCCccceeecccccccccccccccCccccCCccEEeEc
Q 037851 730 LPGLTNVLHDLDGEGFAELKHLNVKNNSNFLCIVDPLQVRCGAFPMLESLVLQNLINLERICHGQLRAESFCNLKTIKVG 809 (1053)
Q Consensus 730 ~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~~~~~~L~~L~i~ 809 (1053)
. .++......+.+|+.+.+.+. ++.+.... ...+.+|+.+.|.+ +++.+....+ ..+.+|+.+.+.
T Consensus 286 ~-----~i~~~~F~~~~~L~~i~l~~~--i~~I~~~a---F~~c~~L~~i~lp~--~v~~I~~~aF--~~c~~L~~i~lp 351 (394)
T 4fs7_A 286 V-----IVPEKTFYGCSSLTEVKLLDS--VKFIGEEA---FESCTSLVSIDLPY--LVEEIGKRSF--RGCTSLSNINFP 351 (394)
T ss_dssp S-----EECTTTTTTCTTCCEEEECTT--CCEECTTT---TTTCTTCCEECCCT--TCCEECTTTT--TTCTTCCEECCC
T ss_pred e-----eeccccccccccccccccccc--cceechhh---hcCCCCCCEEEeCC--cccEEhHHhc--cCCCCCCEEEEC
Confidence 1 122222245677888877543 44443221 23456788888753 3555533222 346778888775
Q ss_pred cCCCccccCCchhhhccCCccEEEeccc
Q 037851 810 SCHKLKNLFSFSIAKFLPQLKTIEVTEC 837 (1053)
Q Consensus 810 ~c~~l~~l~~~~~~~~l~~L~~L~l~~c 837 (1053)
. +++.+.. ....++++|+++.+...
T Consensus 352 ~--~l~~I~~-~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 352 L--SLRKIGA-NAFQGCINLKKVELPKR 376 (394)
T ss_dssp T--TCCEECT-TTBTTCTTCCEEEEEGG
T ss_pred c--cccEehH-HHhhCCCCCCEEEECCC
Confidence 4 3666644 45678899999998653
No 227
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.96 E-value=0.1 Score=58.13 Aligned_cols=106 Identities=10% Similarity=0.140 Sum_probs=61.0
Q ss_pred ccCccceeeccccCCcccccccccccccccccEEEeecCCCceeecCCcccccCcCCccceeecccccccccccccccCc
Q 037851 718 GMKNVEYLRLDELPGLTNVLHDLDGEGFAELKHLNVKNNSNFLCIVDPLQVRCGAFPMLESLVLQNLINLERICHGQLRA 797 (1053)
Q Consensus 718 ~l~~L~~L~L~~~~~~~~~~~~l~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~p~L~~L~l~~~~~L~~~~~~~~~~ 797 (1053)
.+.+|+.+.+.+.. .. +.......+++|+.+.+.. .++.+.... ...+.+|+.+.|.+ +++.+....|
T Consensus 263 ~c~~L~~i~lp~~~--~~-I~~~aF~~c~~L~~i~l~~--~i~~I~~~a---F~~c~~L~~i~lp~--~v~~I~~~aF-- 330 (394)
T 4gt6_A 263 SCAYLASVKMPDSV--VS-IGTGAFMNCPALQDIEFSS--RITELPESV---FAGCISLKSIDIPE--GITQILDDAF-- 330 (394)
T ss_dssp TCSSCCEEECCTTC--CE-ECTTTTTTCTTCCEEECCT--TCCEECTTT---TTTCTTCCEEECCT--TCCEECTTTT--
T ss_pred ecccccEEeccccc--ce-ecCcccccccccccccCCC--cccccCcee---ecCCCCcCEEEeCC--cccEehHhHh--
Confidence 56677777665321 11 1111124567788777753 234443221 33456788888753 4555533332
Q ss_pred cccCCccEEeEccCCCccccCCchhhhccCCccEEEecccc
Q 037851 798 ESFCNLKTIKVGSCHKLKNLFSFSIAKFLPQLKTIEVTECK 838 (1053)
Q Consensus 798 ~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~ 838 (1053)
..+.+|+.+.+-. +++.+.. ..+.++++|+.+++.++.
T Consensus 331 ~~C~~L~~i~ip~--sv~~I~~-~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 331 AGCEQLERIAIPS--SVTKIPE-SAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp TTCTTCCEEEECT--TCCBCCG-GGGTTCTTCCEEEESSCH
T ss_pred hCCCCCCEEEECc--ccCEEhH-hHhhCCCCCCEEEECCce
Confidence 4567888888853 4666643 456788999999988753
No 228
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.95 E-value=0.00065 Score=63.91 Aligned_cols=40 Identities=18% Similarity=0.269 Sum_probs=30.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcC
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSD 214 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~ 214 (1053)
....+.|+|..|+|||||++.++...... .+ .++|+....
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~-g~-~~~~~~~~~ 74 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEA-GK-NAAYIDAAS 74 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTT-TC-CEEEEETTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhc-CC-cEEEEcHHH
Confidence 45789999999999999999999987642 12 256665543
No 229
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.92 E-value=0.00012 Score=68.66 Aligned_cols=45 Identities=7% Similarity=0.023 Sum_probs=31.7
Q ss_pred cccchHHHHHHHHHHhcC--CCeeEEEEEcCCCCcHHHHHHHHHHHh
Q 037851 154 AFESRMSTLKSLQNALLD--PDVTITGVYGMGGLGKTTLVKEVARQV 198 (1053)
Q Consensus 154 ~~~gR~~~~~~l~~~l~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~ 198 (1053)
.++|+...++++.+.+.. ....-|.|+|..|+|||++|+.+++..
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 467888777777766541 222457799999999999999997643
No 230
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.86 E-value=0.011 Score=68.70 Aligned_cols=153 Identities=16% Similarity=0.191 Sum_probs=75.4
Q ss_pred cccchHHHHHHHHHHhc------CCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHH
Q 037851 154 AFESRMSTLKSLQNALL------DPDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELAD 227 (1053)
Q Consensus 154 ~~~gR~~~~~~l~~~l~------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 227 (1053)
.++|-+...+.+.+.+. .....++.++|++|+||||||+.++..... . ...+.++...+...+......
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~--~---~~~i~~~~~~~~~~~~g~~~~ 156 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGR--K---FVRISLGGVRDESEIRGHRRT 156 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTC--E---EEEECCCC-------------
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCC--C---eEEEEecccchhhhhhhHHHH
Confidence 45676666665544332 224568999999999999999999988742 1 222333332222222111111
Q ss_pred HhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCccc------hhhhcCCCCCC---------------CCCcEEE
Q 037851 228 QLGMQFDEESDVPGRARKLYARLQKENKILIILDNIWEDLD------LEKVGVPSGND---------------CRGCKVL 286 (1053)
Q Consensus 228 ~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~------~~~l~~~~~~~---------------~~gs~ii 286 (1053)
..+. ..+......... ....-++++|+++.... ...+...+... .....||
T Consensus 157 ~ig~-------~~~~~~~~~~~a-~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI 228 (543)
T 3m6a_A 157 YVGA-------MPGRIIQGMKKA-GKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFI 228 (543)
T ss_dssp --------------CHHHHHHTT-CSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEE
T ss_pred Hhcc-------CchHHHHHHHHh-hccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEE
Confidence 1110 001111111111 12344888999875421 12222222110 0234677
Q ss_pred EEecChH-----HHHhhCCCcccccCCCHHHHHHHHHHHh
Q 037851 287 LTARDRH-----VLESIGSKTLRIDVLNDEEAWTLFKKMT 321 (1053)
Q Consensus 287 vTtR~~~-----v~~~~~~~~~~l~~L~~~~~~~lf~~~~ 321 (1053)
.||.... +...+ ..+.+.+++.++-..++.++.
T Consensus 229 ~ttN~~~~l~~aL~~R~--~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 229 ATANNLATIPGPLRDRM--EIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp EECSSTTTSCHHHHHHE--EEEECCCCCHHHHHHHHHHTH
T ss_pred eccCccccCCHHHHhhc--ceeeeCCCCHHHHHHHHHHHH
Confidence 7776543 22222 467899999998888887654
No 231
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.83 E-value=0.0011 Score=70.63 Aligned_cols=26 Identities=31% Similarity=0.438 Sum_probs=23.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
++.+.++|++|+|||+||+.+++...
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46788999999999999999999874
No 232
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.82 E-value=0.004 Score=70.98 Aligned_cols=48 Identities=15% Similarity=0.124 Sum_probs=36.5
Q ss_pred cccccchHHHHHHHHH---HhcCC--CeeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 152 YEAFESRMSTLKSLQN---ALLDP--DVTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 152 ~~~~~gR~~~~~~l~~---~l~~~--~~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
...++|.++.++.+.. ++..+ ..+-+.++|++|+|||++|+.+++...
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 4678899888776544 33333 235788999999999999999999865
No 233
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.80 E-value=0.0079 Score=74.43 Aligned_cols=46 Identities=22% Similarity=0.320 Sum_probs=36.4
Q ss_pred cccchHHHHHHHHHHhcC-------C--CeeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 154 AFESRMSTLKSLQNALLD-------P--DVTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 154 ~~~gR~~~~~~l~~~l~~-------~--~~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
.++|.+..++.+...+.. + ....+.|+|+.|+|||++|+.+++...
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~ 613 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF 613 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 578888888888776641 1 125789999999999999999999864
No 234
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.73 E-value=0.0036 Score=75.02 Aligned_cols=173 Identities=14% Similarity=0.200 Sum_probs=96.6
Q ss_pred cccccchHHHHHHHHHHh----cC---------CCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCH
Q 037851 152 YEAFESRMSTLKSLQNAL----LD---------PDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDI 218 (1053)
Q Consensus 152 ~~~~~gR~~~~~~l~~~l----~~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 218 (1053)
...+.|-++.+++|.+++ .. ..++-|.++|++|+|||+||+++++.... ..+.++.++
T Consensus 203 ~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~-----~~~~v~~~~---- 273 (806)
T 3cf2_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA-----FFFLINGPE---- 273 (806)
T ss_dssp GGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTC-----EEEEEEHHH----
T ss_pred hhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCC-----eEEEEEhHH----
Confidence 345566665555555443 22 13567999999999999999999987642 223343321
Q ss_pred HHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCcc--------c-----hhhhcCCCC--CCCCCc
Q 037851 219 KKVQGELADQLGMQFDEESDVPGRARKLYARLQKENKILIILDNIWEDL--------D-----LEKVGVPSG--NDCRGC 283 (1053)
Q Consensus 219 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--------~-----~~~l~~~~~--~~~~gs 283 (1053)
+ ... .....+.....+.+......+.+|++|+++... + ...+...+. ....+.
T Consensus 274 --l----~sk------~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V 341 (806)
T 3cf2_A 274 --I----MSK------LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHV 341 (806)
T ss_dssp --H----HSS------CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCE
T ss_pred --h----hcc------cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCE
Confidence 1 100 011112334444444445778999999986431 0 011111110 112244
Q ss_pred EEEEEecChHHHHh----hC--CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCchH
Q 037851 284 KVLLTARDRHVLES----IG--SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLPIA 347 (1053)
Q Consensus 284 ~iivTtR~~~v~~~----~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlPla 347 (1053)
.||.||...+.... .+ ...+++...+.++-.++|+.+........+. ....|++++.|.--|
T Consensus 342 ~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dv--dl~~lA~~T~Gfsga 409 (806)
T 3cf2_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDV--DLEQVANETHGHVGA 409 (806)
T ss_dssp EEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTC--CHHHHHHHCCSCCHH
T ss_pred EEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCccc--CHHHHHHhcCCCCHH
Confidence 56667665533221 12 4578888899999999998877532221111 156688888887533
No 235
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.70 E-value=0.012 Score=61.58 Aligned_cols=150 Identities=15% Similarity=0.197 Sum_probs=82.3
Q ss_pred cccccchHHHHHHHHHHhc----C---------CCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCH
Q 037851 152 YEAFESRMSTLKSLQNALL----D---------PDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDI 218 (1053)
Q Consensus 152 ~~~~~gR~~~~~~l~~~l~----~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 218 (1053)
..++.|-++.++++.+.+. . .-.+-+.++|+.|+||||||+.++..... ..+++....-.+.
T Consensus 9 ~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 9 WADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNM 83 (274)
T ss_dssp ---CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSS
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhh
Confidence 3456677776666655432 1 11123999999999999999999987642 2344443221110
Q ss_pred HHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCccc-------------hhhhcCCCCC--CCCCc
Q 037851 219 KKVQGELADQLGMQFDEESDVPGRARKLYARLQKENKILIILDNIWEDLD-------------LEKVGVPSGN--DCRGC 283 (1053)
Q Consensus 219 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~-------------~~~l~~~~~~--~~~gs 283 (1053)
........+..+.+......+.++++|+++.... ...+...+.. .....
T Consensus 84 ----------------~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~ 147 (274)
T 2x8a_A 84 ----------------YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQV 147 (274)
T ss_dssp ----------------TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCE
T ss_pred ----------------hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCE
Confidence 0000011223333333235678999999964210 0111111111 12244
Q ss_pred EEEEEecChHHHHh----hC--CCcccccCCCHHHHHHHHHHHhC
Q 037851 284 KVLLTARDRHVLES----IG--SKTLRIDVLNDEEAWTLFKKMTG 322 (1053)
Q Consensus 284 ~iivTtR~~~v~~~----~~--~~~~~l~~L~~~~~~~lf~~~~~ 322 (1053)
-++.+|...++.+. .+ ...+.+...+.++-.++|+.+..
T Consensus 148 i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 148 FIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITK 192 (274)
T ss_dssp EEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTT
T ss_pred EEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHh
Confidence 56677777655432 12 56778888899999999988764
No 236
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.66 E-value=0.013 Score=60.92 Aligned_cols=173 Identities=16% Similarity=0.182 Sum_probs=89.4
Q ss_pred CCcccccchHHHHHHHHHH---hcCC---------CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcC
Q 037851 150 KGYEAFESRMSTLKSLQNA---LLDP---------DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPD 217 (1053)
Q Consensus 150 ~~~~~~~gR~~~~~~l~~~---l~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 217 (1053)
.....++|.+..+.++.+. +... -.+-+.|+|+.|+||||||+.++.... ...+.++..
T Consensus 13 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~-----~~~i~~~~~---- 83 (254)
T 1ixz_A 13 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR-----VPFITASGS---- 83 (254)
T ss_dssp CCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHH----
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC-----CCEEEeeHH----
Confidence 3345677776655554433 2110 112389999999999999999998764 122333221
Q ss_pred HHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCcc------------c----hhhhcCCCCCC--
Q 037851 218 IKKVQGELADQLGMQFDEESDVPGRARKLYARLQKENKILIILDNIWEDL------------D----LEKVGVPSGND-- 279 (1053)
Q Consensus 218 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~------------~----~~~l~~~~~~~-- 279 (1053)
++ .... ..........+.+........++++|+++... . ...+...+..+
T Consensus 84 --~~----~~~~------~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~ 151 (254)
T 1ixz_A 84 --DF----VEMF------VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK 151 (254)
T ss_dssp --HH----HHSC------TTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCT
T ss_pred --HH----HHHH------hhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCC
Confidence 11 1100 00011122333343322456899999994321 0 11221111111
Q ss_pred CCCcEEEEEecChHHHHh--h---C-CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCc
Q 037851 280 CRGCKVLLTARDRHVLES--I---G-SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLP 345 (1053)
Q Consensus 280 ~~gs~iivTtR~~~v~~~--~---~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlP 345 (1053)
.....++.||..++.... . . ...+.+...+.++-.++++..+.......+ .....|++.+.|.-
T Consensus 152 ~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~--~~~~~la~~~~G~~ 221 (254)
T 1ixz_A 152 DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAED--VDLALLAKRTPGFV 221 (254)
T ss_dssp TCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTT--CCHHHHHHTCTTCC
T ss_pred CCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcc--cCHHHHHHHcCCCC
Confidence 123345567776655432 1 1 456788888998888888877643211111 11345677777654
No 237
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.52 E-value=0.019 Score=60.60 Aligned_cols=174 Identities=15% Similarity=0.163 Sum_probs=91.6
Q ss_pred CCCcccccchHHHHHHHHHHhc---CC---------CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCc
Q 037851 149 GKGYEAFESRMSTLKSLQNALL---DP---------DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTP 216 (1053)
Q Consensus 149 ~~~~~~~~gR~~~~~~l~~~l~---~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 216 (1053)
......++|.++.++++.+... .. -.+-+.|+|+.|+||||||+.++.... ...+.++..
T Consensus 36 ~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~~--- 107 (278)
T 1iy2_A 36 KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR-----VPFITASGS--- 107 (278)
T ss_dssp CCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHH---
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC-----CCEEEecHH---
Confidence 3445567887766655544321 10 112389999999999999999998764 123333321
Q ss_pred CHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCc------------cc----hhhhcCCCCCCC
Q 037851 217 DIKKVQGELADQLGMQFDEESDVPGRARKLYARLQKENKILIILDNIWED------------LD----LEKVGVPSGNDC 280 (1053)
Q Consensus 217 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~------------~~----~~~l~~~~~~~~ 280 (1053)
++ ..... .........+.+......+.++++||++.. .. ...+...+..+.
T Consensus 108 ---~~----~~~~~------~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~ 174 (278)
T 1iy2_A 108 ---DF----VEMFV------GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE 174 (278)
T ss_dssp ---HH----HHSTT------THHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCC
T ss_pred ---HH----HHHHh------hHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCC
Confidence 11 11000 001112233334333345689999998421 00 112222222211
Q ss_pred --CCcEEEEEecChHHHHh-----hC-CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCc
Q 037851 281 --RGCKVLLTARDRHVLES-----IG-SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLP 345 (1053)
Q Consensus 281 --~gs~iivTtR~~~v~~~-----~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlP 345 (1053)
....++.||..++.... .. ...+.+...+.++-.++++.++.......+. ....+++.+.|..
T Consensus 175 ~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~--~~~~la~~~~G~~ 245 (278)
T 1iy2_A 175 KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDV--DLALLAKRTPGFV 245 (278)
T ss_dssp TTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTC--CHHHHHHTCTTCC
T ss_pred CCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCccc--CHHHHHHHcCCCC
Confidence 22345556666544321 12 4578888899998888888776432211111 1345777777765
No 238
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.27 E-value=0.0028 Score=66.62 Aligned_cols=68 Identities=19% Similarity=0.283 Sum_probs=43.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEE--cCCcCHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhc
Q 037851 175 TITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEV--SDTPDIKKVQGELADQLGMQFDEESDVPGRARKLYARLQK 252 (1053)
Q Consensus 175 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~--s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 252 (1053)
+++.|+|++|+||||||.+++.... ..++|+++ .+..+. . ..+.+.....+.+.+.+
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~~G-----~~VlyIs~~~eE~v~~---------------~-~~~le~~l~~i~~~l~~ 182 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEALG-----GKDKYATVRFGEPLSG---------------Y-NTDFNVFVDDIARAMLQ 182 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHHHH-----TTSCCEEEEBSCSSTT---------------C-BCCHHHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhCC-----CCEEEEEecchhhhhh---------------h-hcCHHHHHHHHHHHHhh
Confidence 5778999999999999999988611 12456777 222110 0 02333445556666653
Q ss_pred CCcEEEEEcCCCC
Q 037851 253 ENKILIILDNIWE 265 (1053)
Q Consensus 253 ~~~~LlvlDdv~~ 265 (1053)
.+ +||+|++..
T Consensus 183 -~~-LLVIDsI~a 193 (331)
T 2vhj_A 183 -HR-VIVIDSLKN 193 (331)
T ss_dssp -CS-EEEEECCTT
T ss_pred -CC-EEEEecccc
Confidence 34 999999954
No 239
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.21 E-value=0.0056 Score=74.99 Aligned_cols=102 Identities=16% Similarity=0.170 Sum_probs=57.9
Q ss_pred cccchHHHHHHHHHHhcC-------C--CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHH
Q 037851 154 AFESRMSTLKSLQNALLD-------P--DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGE 224 (1053)
Q Consensus 154 ~~~gR~~~~~~l~~~l~~-------~--~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 224 (1053)
.++|.+..++.+...+.. + ....+.++|++|+|||++|+.+++... ...+.++.+.......
T Consensus 459 ~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~-----~~~~~i~~s~~~~~~~---- 529 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG-----IELLRFDMSEYMERHT---- 529 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT-----CEEEEEEGGGCSSSSC----
T ss_pred hccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhc-----CCEEEEechhhcchhh----
Confidence 467888888877766641 1 224789999999999999999998873 2345555554322100
Q ss_pred HHHHhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCc
Q 037851 225 LADQLGMQFDEESDVPGRARKLYARLQKENKILIILDNIWED 266 (1053)
Q Consensus 225 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~ 266 (1053)
+.+.+|.. +.... ......+...+.....-+|+||+++..
T Consensus 530 ~~~l~g~~-~g~~g-~~~~~~l~~~~~~~~~~vl~lDEi~~~ 569 (758)
T 1r6b_X 530 VSRLIGAP-PGYVG-FDQGGLLTDAVIKHPHAVLLLDEIEKA 569 (758)
T ss_dssp CSSSCCCC-SCSHH-HHHTTHHHHHHHHCSSEEEEEETGGGS
T ss_pred HhhhcCCC-CCCcC-ccccchHHHHHHhCCCcEEEEeCcccc
Confidence 00001111 00000 011122334444455789999999754
No 240
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.18 E-value=0.028 Score=63.89 Aligned_cols=169 Identities=16% Similarity=0.176 Sum_probs=91.9
Q ss_pred CcccccchHHHHHHHHHH---hcCC---------CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCH
Q 037851 151 GYEAFESRMSTLKSLQNA---LLDP---------DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDI 218 (1053)
Q Consensus 151 ~~~~~~gR~~~~~~l~~~---l~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 218 (1053)
....++|.++.++++.+. +... -.+-+.|+|++|+||||||+.++.... ...+.++.+.-.+.
T Consensus 29 ~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~-----~~~i~i~g~~~~~~ 103 (499)
T 2dhr_A 29 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEM 103 (499)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT-----CCEEEEEGGGGTSS
T ss_pred CHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC-----CCEEEEehhHHHHh
Confidence 345678887766665543 3221 123489999999999999999998764 12344443321110
Q ss_pred HHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHh---cCCcEEEEEcCCCCcc------------c----hhhhcCCCCC-
Q 037851 219 KKVQGELADQLGMQFDEESDVPGRARKLYARLQ---KENKILIILDNIWEDL------------D----LEKVGVPSGN- 278 (1053)
Q Consensus 219 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~---~~~~~LlvlDdv~~~~------------~----~~~l~~~~~~- 278 (1053)
........+...+. ...+.++++|+++... . ...+...+..
T Consensus 104 -------------------~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~ 164 (499)
T 2dhr_A 104 -------------------FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGF 164 (499)
T ss_dssp -------------------CTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGC
T ss_pred -------------------hhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccc
Confidence 00011112222222 1235799999995321 0 1122221211
Q ss_pred -CCCCcEEEEEecChHHHHh--h---C-CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCc
Q 037851 279 -DCRGCKVLLTARDRHVLES--I---G-SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLP 345 (1053)
Q Consensus 279 -~~~gs~iivTtR~~~v~~~--~---~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlP 345 (1053)
...+..|+.||..++.... . . ...+.+...+.++-.++++.++....-.++ .....|++.+.|..
T Consensus 165 ~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~d--v~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 165 EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAED--VDLALLAKRTPGFV 236 (499)
T ss_dssp CSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCS--STTHHHHTTSCSCC
T ss_pred ccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChH--HHHHHHHHhcCCCC
Confidence 1234567777777655331 1 1 456788889999889999877643211111 11445777777776
No 241
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.14 E-value=0.0099 Score=60.82 Aligned_cols=47 Identities=15% Similarity=0.226 Sum_probs=32.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHH
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGE 224 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 224 (1053)
..++.|+|..|+|||||++.++......+ ..++|+.... ....+...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~--~~v~~~~~~~--~~~~~~~~ 69 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRDG--DPCIYVTTEE--SRDSIIRQ 69 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHHT--CCEEEEESSS--CHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHCC--CeEEEEEccc--CHHHHHHH
Confidence 36899999999999999999997654322 2466665443 34444433
No 242
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.12 E-value=0.016 Score=59.58 Aligned_cols=92 Identities=15% Similarity=0.144 Sum_probs=56.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhcC----CCCeEEEEEEcCCcCHHHHHHHHHHHhCCCCC---------CCCChh
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVKKDK----HFDEVVFAEVSDTPDIKKVQGELADQLGMQFD---------EESDVP 240 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~---------~~~~~~ 240 (1053)
..++.|+|++|+||||||+.++....... .-..++|++....++...+ ..+++.++.... ......
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL-LAVAERYGLSGSDVLDNVAYARAFNTD 102 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHH-HHHHHHcCCCHHHHhhCeEEEecCCHH
Confidence 36999999999999999999998643211 2357889987775555444 344555554320 111111
Q ss_pred H---HHHHHHHHHhcCCcEEEEEcCCCCc
Q 037851 241 G---RARKLYARLQKENKILIILDNIWED 266 (1053)
Q Consensus 241 ~---~~~~l~~~l~~~~~~LlvlDdv~~~ 266 (1053)
. ....+.+.+...+.-+||+|++...
T Consensus 103 ~~~~~~~~~~~~~~~~~~~lliiD~~~~~ 131 (243)
T 1n0w_A 103 HQTQLLYQASAMMVESRYALLIVDSATAL 131 (243)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSSGG
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeCchHH
Confidence 1 1223444444457788999988543
No 243
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.04 E-value=0.019 Score=58.06 Aligned_cols=44 Identities=23% Similarity=0.266 Sum_probs=33.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHH
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQ 222 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 222 (1053)
..++.|+|.+|+||||||..++. .. -..++|++.....+...+.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~-~~----~~~v~~i~~~~~~~~~~~~ 63 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL-LS----GKKVAYVDTEGGFSPERLV 63 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH-HH----CSEEEEEESSCCCCHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-Hc----CCcEEEEECCCCCCHHHHH
Confidence 46999999999999999999988 21 2468888877655655543
No 244
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.01 E-value=0.029 Score=58.71 Aligned_cols=86 Identities=8% Similarity=0.067 Sum_probs=57.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhCCCCCC-----CCChhHHHHHHHHHH
Q 037851 176 ITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLGMQFDE-----ESDVPGRARKLYARL 250 (1053)
Q Consensus 176 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~~~l 250 (1053)
++-|.|++|+||||||.+++.....+..=..++|++....++.. .+++++.+.+. ..+.++....+.+.+
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 78999999999999999998776532112468999988877753 37778765432 122222213333343
Q ss_pred ---hcCCcEEEEEcCCCCc
Q 037851 251 ---QKENKILIILDNIWED 266 (1053)
Q Consensus 251 ---~~~~~~LlvlDdv~~~ 266 (1053)
...+.-+||+|-|-..
T Consensus 105 ~~i~~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLGNL 123 (333)
T ss_dssp HTCCTTCCEEEEEECSTTC
T ss_pred HHhhccCceEEEEeccccc
Confidence 4567889999998544
No 245
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.96 E-value=0.022 Score=61.51 Aligned_cols=86 Identities=19% Similarity=0.208 Sum_probs=56.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhCCCCCC-----CCChhHHHHHHHH
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLGMQFDE-----ESDVPGRARKLYA 248 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~~ 248 (1053)
.+++.|+|++|+||||||.+++......+ ..++|++.....+.. .+++++..... ....++....+..
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~g--g~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~~ 133 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKMG--GVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVDE 133 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcC--CeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHHH
Confidence 46999999999999999999998865322 347888877766643 56666654321 1223233333333
Q ss_pred HHhcCCcEEEEEcCCCCc
Q 037851 249 RLQKENKILIILDNIWED 266 (1053)
Q Consensus 249 ~l~~~~~~LlvlDdv~~~ 266 (1053)
.+...+.-++|+|.+-..
T Consensus 134 l~~~~~~dlvVIDSi~~l 151 (356)
T 3hr8_A 134 LVRSGVVDLIVVDSVAAL 151 (356)
T ss_dssp HHHTSCCSEEEEECTTTC
T ss_pred HhhhcCCCeEEehHhhhh
Confidence 333355668999998543
No 246
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.87 E-value=0.038 Score=60.05 Aligned_cols=92 Identities=18% Similarity=0.276 Sum_probs=56.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhcC----CCCeEEEEEEcCCcCHHHHHHHHHHHhCCCCC---------CCCCh
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKKDK----HFDEVVFAEVSDTPDIKKVQGELADQLGMQFD---------EESDV 239 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~---------~~~~~ 239 (1053)
...++.|+|.+|+||||||.+++....... .-..++|++....++...+. ++++.++.... ...+.
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~-~~~~~~g~~~~~~l~~l~~~~~~~~ 199 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLR-DIADRFNVDHDAVLDNVLYARAYTS 199 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHcCCCHHHHHhceeEeecCCH
Confidence 347999999999999999999988743211 23468999988877766554 44555554321 01111
Q ss_pred h---HHHHHHHHHHhc--CCcEEEEEcCCCC
Q 037851 240 P---GRARKLYARLQK--ENKILIILDNIWE 265 (1053)
Q Consensus 240 ~---~~~~~l~~~l~~--~~~~LlvlDdv~~ 265 (1053)
+ .....+...+.+ .+.-+||+|.+..
T Consensus 200 e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~ 230 (343)
T 1v5w_A 200 EHQMELLDYVAAKFHEEAGIFKLLIIDSIMA 230 (343)
T ss_dssp THHHHHHHHHHHHHHHSCSSEEEEEEETSGG
T ss_pred HHHHHHHHHHHHHHHhcCCCccEEEEechHH
Confidence 1 122233344433 4566888888743
No 247
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.84 E-value=0.035 Score=59.86 Aligned_cols=91 Identities=22% Similarity=0.342 Sum_probs=57.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhcC----CCCeEEEEEEcCCcCHHHHHHHHHHHhCCCCC---------CCCChh
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVKKDK----HFDEVVFAEVSDTPDIKKVQGELADQLGMQFD---------EESDVP 240 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~---------~~~~~~ 240 (1053)
..++.|+|.+|+||||+|.+++....... .-..++|++....++...+. ++++.++.... ...+.+
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~l~~~~~~~~~ 185 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGLDIDNVMNNIYYIRAINTD 185 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCCCHHHHhccEEEEeCCCHH
Confidence 46999999999999999999988753211 02468999988877766654 44566654321 111111
Q ss_pred ---HHHHHHHHHHhc-CCcEEEEEcCCCC
Q 037851 241 ---GRARKLYARLQK-ENKILIILDNIWE 265 (1053)
Q Consensus 241 ---~~~~~l~~~l~~-~~~~LlvlDdv~~ 265 (1053)
.....+...+.+ .+.-+||+|.+..
T Consensus 186 ~~~~~l~~l~~~~~~~~~~~lvVIDsl~~ 214 (324)
T 2z43_A 186 HQIAIVDDLQELVSKDPSIKLIVVDSVTS 214 (324)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEETTTTH
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEeCcHH
Confidence 123334444444 5667888888843
No 248
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.75 E-value=0.038 Score=53.38 Aligned_cols=22 Identities=27% Similarity=0.502 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 037851 175 TITGVYGMGGLGKTTLVKEVARQ 197 (1053)
Q Consensus 175 ~vi~I~G~~GiGKTtLa~~v~~~ 197 (1053)
.+|+|.|++|+||||+|+.+ +.
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~ 23 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KE 23 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HH
T ss_pred cEEEEECCCCCCHHHHHHHH-HH
Confidence 47999999999999999999 44
No 249
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.69 E-value=0.51 Score=52.54 Aligned_cols=90 Identities=18% Similarity=0.226 Sum_probs=49.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCC-cCHHHHHHHHHHHhCCCCCC---CCChhHHHHHHHH
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDT-PDIKKVQGELADQLGMQFDE---ESDVPGRARKLYA 248 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l~~ 248 (1053)
..++|.++|.+|+||||+|..++.....+... .+..+++... ....+.+.......+...-. ..+..........
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~-kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKK-KVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCC-CEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCC-eEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 46799999999999999999999988754122 3455555432 23333333344444432111 1222233333444
Q ss_pred HHhcCCcEEEEEcCC
Q 037851 249 RLQKENKILIILDNI 263 (1053)
Q Consensus 249 ~l~~~~~~LlvlDdv 263 (1053)
.+....-=++|+|-.
T Consensus 178 ~~~~~~~D~VIIDTp 192 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTA 192 (433)
T ss_dssp HHHHTTCSEEEEECC
T ss_pred HHHhCCCCEEEEECC
Confidence 443222235666765
No 250
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.68 E-value=0.011 Score=63.21 Aligned_cols=54 Identities=19% Similarity=0.305 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHhcCC---CeeEEEEEcCCCCcHHHHHHHHHHHhh-hcCCCCeEEEEEEc
Q 037851 158 RMSTLKSLQNALLDP---DVTITGVYGMGGLGKTTLVKEVARQVK-KDKHFDEVVFAEVS 213 (1053)
Q Consensus 158 R~~~~~~l~~~l~~~---~~~vi~I~G~~GiGKTtLa~~v~~~~~-~~~~f~~~~wv~~s 213 (1053)
+...++.+.+++... ....+.|+|+.|+|||+||+.+++... ..+ + .+++++++
T Consensus 133 ~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g-~-~v~~~~~~ 190 (308)
T 2qgz_A 133 RMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKG-V-STTLLHFP 190 (308)
T ss_dssp HHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSC-C-CEEEEEHH
T ss_pred HHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcC-C-cEEEEEHH
Confidence 444555555666421 246889999999999999999999876 432 2 34555543
No 251
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.53 E-value=0.043 Score=59.79 Aligned_cols=85 Identities=21% Similarity=0.266 Sum_probs=54.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhCCCCC-----CCCChhHHHHHHHH
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLGMQFD-----EESDVPGRARKLYA 248 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 248 (1053)
..++.|.|.+|+||||||.+++......+ ..++|++.....+.. .++.++.+.+ .....++....+..
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~g--~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~ 146 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKAG--GTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMEL 146 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHCC--CeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHH
Confidence 46899999999999999999988765322 368899988776643 2555655422 11222233333333
Q ss_pred HHhcCCcEEEEEcCCCC
Q 037851 249 RLQKENKILIILDNIWE 265 (1053)
Q Consensus 249 ~l~~~~~~LlvlDdv~~ 265 (1053)
.....+.-+||+|.+..
T Consensus 147 l~~~~~~~lVVIDsl~~ 163 (366)
T 1xp8_A 147 LVRSGAIDVVVVDSVAA 163 (366)
T ss_dssp HHTTTCCSEEEEECTTT
T ss_pred HHhcCCCCEEEEeChHH
Confidence 33234456899999843
No 252
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.53 E-value=0.028 Score=60.60 Aligned_cols=90 Identities=18% Similarity=0.287 Sum_probs=55.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhcC---------CC-----CeEEEEEEcCCcCHHHHHHHHHHHhCCCCC-----
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVKKDK---------HF-----DEVVFAEVSDTPDIKKVQGELADQLGMQFD----- 234 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---------~f-----~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~----- 234 (1053)
..++.|+|.+|+||||+|.+++....... .. ..++|++....++...+. ++++.++.+..
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~ 176 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIM-QMAEHAGIDGQTVLDN 176 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHH-HHHHHHTCCHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHH-HHHHHcCCCHHHHhcC
Confidence 47999999999999999999987642111 11 468999988877776665 44566654321
Q ss_pred ----CCCChh---HHHHHHHHHHhc-CCcEEEEEcCCC
Q 037851 235 ----EESDVP---GRARKLYARLQK-ENKILIILDNIW 264 (1053)
Q Consensus 235 ----~~~~~~---~~~~~l~~~l~~-~~~~LlvlDdv~ 264 (1053)
...+.+ .....+...+.+ .+.-+||+|.+-
T Consensus 177 l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 214 (322)
T 2i1q_A 177 TFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLT 214 (322)
T ss_dssp EEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSS
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcH
Confidence 011111 122334444433 445678888874
No 253
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.51 E-value=0.58 Score=51.87 Aligned_cols=29 Identities=41% Similarity=0.484 Sum_probs=25.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhc
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKKD 201 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 201 (1053)
...+|.++|.+|+||||++..++.....+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 46899999999999999999999887743
No 254
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.43 E-value=0.028 Score=68.57 Aligned_cols=171 Identities=15% Similarity=0.190 Sum_probs=92.0
Q ss_pred CcccccchHHHHHHHHHHhcC-------------CCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcC
Q 037851 151 GYEAFESRMSTLKSLQNALLD-------------PDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPD 217 (1053)
Q Consensus 151 ~~~~~~gR~~~~~~l~~~l~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 217 (1053)
....++|.+..++++.+++.. .....|.|+|++|+||||||+.++.... .. .+.++.+.
T Consensus 202 ~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~--~~---~i~v~~~~--- 273 (806)
T 1ypw_A 202 GYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG--AF---FFLINGPE--- 273 (806)
T ss_dssp CGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTT--CE---EEEEEHHH---
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC--Cc---EEEEEchH---
Confidence 345678888777777666531 2346799999999999999999987653 11 23333211
Q ss_pred HHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCcc----------------chhhhcCCCCCCCC
Q 037851 218 IKKVQGELADQLGMQFDEESDVPGRARKLYARLQKENKILIILDNIWEDL----------------DLEKVGVPSGNDCR 281 (1053)
Q Consensus 218 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~----------------~~~~l~~~~~~~~~ 281 (1053)
+ ... ...........+.+......+.++++|+++... .+..+..... ...
T Consensus 274 ---l--------~~~--~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~-~~~ 339 (806)
T 1ypw_A 274 ---I--------MSK--LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-QRA 339 (806)
T ss_dssp ---H--------SSS--STTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSC-TTS
T ss_pred ---h--------hhh--hhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhc-ccc
Confidence 1 000 001111223334444334567899999984321 0111111111 123
Q ss_pred CcEEEEEecChHHHHh----hC--CCcccccCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHhCCCc
Q 037851 282 GCKVLLTARDRHVLES----IG--SKTLRIDVLNDEEAWTLFKKMTGDCAEKGELKSIATDVAKECGGLP 345 (1053)
Q Consensus 282 gs~iivTtR~~~v~~~----~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~GlP 345 (1053)
+..+|.||...+-... .+ ...+.+...+.++-.+++..++.......+. ...++++.+.|.-
T Consensus 340 ~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~--~l~~la~~t~g~~ 407 (806)
T 1ypw_A 340 HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDV--DLEQVANETHGHV 407 (806)
T ss_dssp CCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTC--CTHHHHHSCSSCC
T ss_pred cEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccc--hhHHHHHhhcCcc
Confidence 4566667665432221 11 3456788888999999998776432211110 1234555566554
No 255
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.42 E-value=0.039 Score=59.82 Aligned_cols=85 Identities=16% Similarity=0.213 Sum_probs=53.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhCCCCCC-----CCChhHHHHHHHH
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLGMQFDE-----ESDVPGRARKLYA 248 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~~ 248 (1053)
.+++.|+|.+|+||||||.+++......+ ..++|++.....+.. .++.++...+. ....++....+..
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~~g--~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~~ 133 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQAAG--GIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIADM 133 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCC--CeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 47999999999999999999987765322 358899988766643 35566644321 1122222222222
Q ss_pred HHhcCCcEEEEEcCCCC
Q 037851 249 RLQKENKILIILDNIWE 265 (1053)
Q Consensus 249 ~l~~~~~~LlvlDdv~~ 265 (1053)
.....+.-+||+|.+-.
T Consensus 134 l~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 134 LVRSGALDIIVIDSVAA 150 (349)
T ss_dssp HHTTTCCSEEEEECGGG
T ss_pred HHhcCCCCEEEEcChHh
Confidence 22234567999999854
No 256
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.37 E-value=0.041 Score=59.74 Aligned_cols=84 Identities=21% Similarity=0.319 Sum_probs=53.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhCCCCCC-----CCChhHHHHHHHH
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLGMQFDE-----ESDVPGRARKLYA 248 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~~ 248 (1053)
.+++.|.|.+|+||||||.+++......+ ..++|++.....+.. .++.++...+. ....+.. ..+.+
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~~g--~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~-~~~~~ 134 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQREG--KTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQA-LEICD 134 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHH-HHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHH-HHHHH
Confidence 46999999999999999999988765332 368899988776643 24556543221 1122222 22333
Q ss_pred HH-hcCCcEEEEEcCCCC
Q 037851 249 RL-QKENKILIILDNIWE 265 (1053)
Q Consensus 249 ~l-~~~~~~LlvlDdv~~ 265 (1053)
.+ ...+.-+||+|.+-.
T Consensus 135 ~l~~~~~~~lVVIDsl~~ 152 (356)
T 1u94_A 135 ALARSGAVDVIVVDSVAA 152 (356)
T ss_dssp HHHHHTCCSEEEEECGGG
T ss_pred HHHhccCCCEEEEcCHHH
Confidence 33 234556899999843
No 257
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.33 E-value=0.018 Score=57.35 Aligned_cols=44 Identities=20% Similarity=0.385 Sum_probs=35.2
Q ss_pred chHHHHHHHHHHhcC---CCeeEEEEEcCCCCcHHHHHHHHHHHhhh
Q 037851 157 SRMSTLKSLQNALLD---PDVTITGVYGMGGLGKTTLVKEVARQVKK 200 (1053)
Q Consensus 157 gR~~~~~~l~~~l~~---~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 200 (1053)
.|++.++++.+.+.. ....+|+|.|..|+||||+++.+......
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~ 48 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLRE 48 (201)
T ss_dssp CHHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 466677888777753 34579999999999999999999987653
No 258
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.22 E-value=0.03 Score=60.10 Aligned_cols=98 Identities=13% Similarity=0.137 Sum_probs=55.3
Q ss_pred HHHHHhc-CCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcC-CCCeEEEEEEcCCcC-HHHHHHHHHHHhCC----CCCCC
Q 037851 164 SLQNALL-DPDVTITGVYGMGGLGKTTLVKEVARQVKKDK-HFDEVVFAEVSDTPD-IKKVQGELADQLGM----QFDEE 236 (1053)
Q Consensus 164 ~l~~~l~-~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~f~~~~wv~~s~~~~-~~~~~~~i~~~l~~----~~~~~ 236 (1053)
++++.+. -.....++|+|..|+|||||++.+.+....++ .++ ++++-+.+... +.++ .+.+.. ...++
T Consensus 163 raID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~-~I~~lIGER~~Ev~~~----~~~~~~~vV~atade 237 (422)
T 3ice_A 163 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDERPEEVTEM----QRLVKGEVVASTFDE 237 (422)
T ss_dssp HHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSE-EEEEEESSCHHHHHHH----HTTCSSEEEEECTTS
T ss_pred eeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCee-EEEEEecCChHHHHHH----HHHhCeEEEEeCCCC
Confidence 4455554 23456899999999999999999988765422 232 45677776542 3333 222211 11111
Q ss_pred CChhH-----HHHHHHHHHh-cCCcEEEEEcCCCCc
Q 037851 237 SDVPG-----RARKLYARLQ-KENKILIILDNIWED 266 (1053)
Q Consensus 237 ~~~~~-----~~~~l~~~l~-~~~~~LlvlDdv~~~ 266 (1053)
+.... .+-.+-+++. +++.+||++||+...
T Consensus 238 p~~~r~~~a~~alt~AEyfrd~G~dVLil~DslTR~ 273 (422)
T 3ice_A 238 PASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRL 273 (422)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTSCEEEEEEECHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeCchHH
Confidence 11100 1111223332 589999999999543
No 259
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.17 E-value=0.11 Score=56.43 Aligned_cols=157 Identities=8% Similarity=-0.057 Sum_probs=96.6
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHh
Q 037851 172 PDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLGMQFDEESDVPGRARKLYARLQ 251 (1053)
Q Consensus 172 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 251 (1053)
.-.++..++|..|.||++.|+.+.+..... .|+....+.+....+++++...+.. .-+
T Consensus 16 ~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~--------------------~pl- 73 (343)
T 1jr3_D 16 GLRAAYLLLGNDPLLLQESQDAVRQVAAAQ-GFEEHHTFSIDPNTDWNAIFSLCQA--------------------MSL- 73 (343)
T ss_dssp CCCSEEEEEESCHHHHHHHHHHHHHHHHHH-TCCEEEEEECCTTCCHHHHHHHHHH--------------------HHH-
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHHHHHhC-CCCeeEEEEecCCCCHHHHHHHhcC--------------------cCC-
Confidence 345789999999999999999998876532 3443222233333444443322211 112
Q ss_pred cCCcEEEEEcCCCC-c--cchhhhcCCCCCCCCCcEEEEEecC-------hHHHHhhC--CCcccccCCCHHHHHHHHHH
Q 037851 252 KENKILIILDNIWE-D--LDLEKVGVPSGNDCRGCKVLLTARD-------RHVLESIG--SKTLRIDVLNDEEAWTLFKK 319 (1053)
Q Consensus 252 ~~~~~LlvlDdv~~-~--~~~~~l~~~~~~~~~gs~iivTtR~-------~~v~~~~~--~~~~~l~~L~~~~~~~lf~~ 319 (1053)
-+++-++|+|+++. . ..++.+...+....+++.+|++|-. ..+..... ...++..+++.++....+.+
T Consensus 74 f~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~ 153 (343)
T 1jr3_D 74 FASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAA 153 (343)
T ss_dssp CCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHH
Confidence 35677889999865 2 3444444333333346777766643 23444433 56789999999999988887
Q ss_pred HhCCCCCCccchHHHHHHHHHhCCCchHHHHH
Q 037851 320 MTGDCAEKGELKSIATDVAKECGGLPIAIVTL 351 (1053)
Q Consensus 320 ~~~~~~~~~~~~~~~~~i~~~~~GlPlai~~~ 351 (1053)
.+....- .--++....|++.++|.+.++...
T Consensus 154 ~~~~~g~-~i~~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 154 RAKQLNL-ELDDAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp HHHHTTC-EECHHHHHHHHHSSTTCHHHHHHH
T ss_pred HHHHcCC-CCCHHHHHHHHHHhchHHHHHHHH
Confidence 7632111 112456888999999988777653
No 260
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.00 E-value=0.42 Score=52.95 Aligned_cols=39 Identities=28% Similarity=0.265 Sum_probs=29.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEc
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVS 213 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s 213 (1053)
..++|.++|.+|+||||++..++...+.++ . .+..++..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G-~-kVllv~~D 134 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRG-Y-KVGLVAAD 134 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTT-C-CEEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC-C-eEEEEecC
Confidence 468999999999999999999998887533 2 34445543
No 261
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.98 E-value=0.026 Score=56.43 Aligned_cols=41 Identities=22% Similarity=0.324 Sum_probs=32.7
Q ss_pred HHHHHHHHHhcC--CCeeEEEEEcCCCCcHHHHHHHHHHHhhh
Q 037851 160 STLKSLQNALLD--PDVTITGVYGMGGLGKTTLVKEVARQVKK 200 (1053)
Q Consensus 160 ~~~~~l~~~l~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 200 (1053)
+.+++|.+.+.. ....+|+|+|+.|.|||||++.+......
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 455666666652 45689999999999999999999988763
No 262
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.88 E-value=0.058 Score=59.47 Aligned_cols=90 Identities=16% Similarity=0.205 Sum_probs=54.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhc----CCCCeEEEEEEcCCcCHHHHHHHHHHHhCCCCC---------CCCChh
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVKKD----KHFDEVVFAEVSDTPDIKKVQGELADQLGMQFD---------EESDVP 240 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~----~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~---------~~~~~~ 240 (1053)
..++.|+|.+|+|||||+..++-..... ..-..++|++....++...+ ..+++.++.... ......
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl~~~~vleni~~~~~~~~~ 256 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGLDPDDALNNVAYARAYNAD 256 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCCChHhHhhcEEEeccCChH
Confidence 3699999999999999999876443211 12346889988776665544 346666664321 111111
Q ss_pred ---HHHHHHHHHHhcCCcEEEEEcCCC
Q 037851 241 ---GRARKLYARLQKENKILIILDNIW 264 (1053)
Q Consensus 241 ---~~~~~l~~~l~~~~~~LlvlDdv~ 264 (1053)
.....+...+...+.-+||+|.+-
T Consensus 257 ~~~~~l~~~~~~l~~~~~~llVIDs~t 283 (400)
T 3lda_A 257 HQLRLLDAAAQMMSESRFSLIVVDSVM 283 (400)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETGG
T ss_pred HHHHHHHHHHHHHHhcCCceEEecchh
Confidence 122333344444567788888863
No 263
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.74 E-value=0.083 Score=55.80 Aligned_cols=87 Identities=15% Similarity=0.155 Sum_probs=47.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCC-cCHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHh
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDT-PDIKKVQGELADQLGMQFDEESDVPGRARKLYARLQ 251 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 251 (1053)
...+++++|.+|+||||++..++........ ..+.++..... ....+.+....+..+.......+. .........+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G-~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~-~~l~~al~~~- 180 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKH-KKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTK-EEFQQAKELF- 180 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTC-CCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSH-HHHHHHHHHG-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC-CEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCH-HHHHHHHHHh-
Confidence 4579999999999999999999988764222 23555554332 233333444444444332211222 2222222233
Q ss_pred cCCcEEEEEcCC
Q 037851 252 KENKILIILDNI 263 (1053)
Q Consensus 252 ~~~~~LlvlDdv 263 (1053)
.+.=++|+|-.
T Consensus 181 -~~~dlvIiDT~ 191 (296)
T 2px0_A 181 -SEYDHVFVDTA 191 (296)
T ss_dssp -GGSSEEEEECC
T ss_pred -cCCCEEEEeCC
Confidence 23457888844
No 264
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.72 E-value=0.091 Score=53.31 Aligned_cols=56 Identities=29% Similarity=0.344 Sum_probs=37.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhc---C-CCCeEEEEEEcCCcCHHHHHHHHHHHhC
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVKKD---K-HFDEVVFAEVSDTPDIKKVQGELADQLG 230 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~-~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 230 (1053)
..+++|+|+.|+|||||++.++...... . .-..++|+.......... ...+.+..+
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~-i~~~~~~~~ 84 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRG 84 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHH-HHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHH-HHHHHHHcC
Confidence 4799999999999999999998754321 1 234578887655444333 334444443
No 265
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=94.50 E-value=0.2 Score=55.48 Aligned_cols=101 Identities=22% Similarity=0.300 Sum_probs=63.8
Q ss_pred HHHHHhc-CCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCc-CHHHHHHHHHHHhCCC---------
Q 037851 164 SLQNALL-DPDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTP-DIKKVQGELADQLGMQ--------- 232 (1053)
Q Consensus 164 ~l~~~l~-~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~--------- 232 (1053)
+.++.+. -.+..-++|+|.+|+|||+|+..+.+.... .+-+.++|+-+.+.. ...++.+++.+.-...
T Consensus 142 r~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~~-~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rtv 220 (482)
T 2ck3_D 142 KVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAK-AHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVA 220 (482)
T ss_dssp HHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHTTT-TCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEE
T ss_pred EEEecccccccCCeeeeecCCCCChHHHHHHHHHhhHh-hCCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceEE
Confidence 4455554 223468899999999999999999987642 334678888888765 4667777776552221
Q ss_pred ----CCCCCCh-----hHHHHHHHHHHh--cCCcEEEEEcCCCC
Q 037851 233 ----FDEESDV-----PGRARKLYARLQ--KENKILIILDNIWE 265 (1053)
Q Consensus 233 ----~~~~~~~-----~~~~~~l~~~l~--~~~~~LlvlDdv~~ 265 (1053)
..+++.. ....-.+-+++. +++.+||++||+..
T Consensus 221 vV~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~DsitR 264 (482)
T 2ck3_D 221 LVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFR 264 (482)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTHH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 0111111 011223445554 38999999999843
No 266
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.43 E-value=0.077 Score=59.02 Aligned_cols=90 Identities=21% Similarity=0.322 Sum_probs=53.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCc-CHHHHHHHHHHHhCC-------CCCCCCChhHH----
Q 037851 175 TITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTP-DIKKVQGELADQLGM-------QFDEESDVPGR---- 242 (1053)
Q Consensus 175 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~-------~~~~~~~~~~~---- 242 (1053)
..++|+|..|+||||||+.+......+. -+.++++-+.+.. ...+++.++...-.. ..-.++.....
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~~-~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~~ 230 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQEH-GGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVAL 230 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHHT-CCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhcc-CcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHHH
Confidence 4689999999999999999988765332 2455677776654 345555555432000 01111111011
Q ss_pred -HHHHHHHHh--cCCcEEEEEcCCCC
Q 037851 243 -ARKLYARLQ--KENKILIILDNIWE 265 (1053)
Q Consensus 243 -~~~l~~~l~--~~~~~LlvlDdv~~ 265 (1053)
.-.+.+++. +++++||++||+..
T Consensus 231 ~~ltiAEyFrd~~G~~VLl~~D~itR 256 (473)
T 1sky_E 231 TGLTMAEYFRDEQGQDGLLFIDNIFR 256 (473)
T ss_dssp HHHHHHHHHHHHSCCEEEEEEECTHH
T ss_pred HHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 123444444 48999999999943
No 267
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.41 E-value=0.023 Score=55.22 Aligned_cols=25 Identities=16% Similarity=0.235 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 175 TITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 175 ~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
.+|.|.|++|+||||+|+.+.+...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5799999999999999999998764
No 268
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.35 E-value=0.025 Score=54.57 Aligned_cols=25 Identities=20% Similarity=0.230 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 175 TITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 175 ~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
.+|.|.|+.|+||||+|+.+.+...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999998764
No 269
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.27 E-value=0.23 Score=53.05 Aligned_cols=51 Identities=16% Similarity=0.150 Sum_probs=38.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHH
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQ 228 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 228 (1053)
..++.|.|.+|+||||+|..++.....++ ..++|++.. -+..++...+...
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 46899999999999999999998766433 567887765 4566666666654
No 270
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=94.25 E-value=0.13 Score=57.32 Aligned_cols=108 Identities=12% Similarity=0.168 Sum_probs=69.6
Q ss_pred cccccCCCceeEEeecCccccCCCcccccCccCcEEEcCCcccCC--ccccCCCCCCcEEEccCCCCcccch-hhhccCC
Q 037851 521 DNIFIGTPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDGCELED--IRVIGELKDLEILSLQGSKIEQLPR-EIGQLTQ 597 (1053)
Q Consensus 521 ~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~Lr~L~L~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~lp~-~i~~L~~ 597 (1053)
...|.++..|+.+.+..+...--...+.++..|+.+.+.. .+.. -..|.++.+|+.++|..+ ++.++. .+..+.+
T Consensus 258 ~~aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~ 335 (394)
T 4gt6_A 258 THAFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQ 335 (394)
T ss_dssp TTTTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred cceeeecccccEEecccccceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCC
Confidence 3456777777777775543221233566777777777753 2333 255677778888877653 666643 4667778
Q ss_pred CCeeeccCcccccccCcchhcCCccCceeeccccc
Q 037851 598 LKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCS 632 (1053)
Q Consensus 598 L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 632 (1053)
|+.+.+.. .+..+....+.++++|+.+++.++.
T Consensus 336 L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 336 LERIAIPS--SVTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp CCEEEECT--TCCBCCGGGGTTCTTCCEEEESSCH
T ss_pred CCEEEECc--ccCEEhHhHhhCCCCCCEEEECCce
Confidence 88887764 4666766777778888888776654
No 271
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.22 E-value=0.028 Score=55.75 Aligned_cols=27 Identities=37% Similarity=0.388 Sum_probs=23.9
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
..++|.|+|+.|+||||+|+.++....
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 346899999999999999999998764
No 272
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.96 E-value=0.033 Score=54.45 Aligned_cols=26 Identities=31% Similarity=0.410 Sum_probs=23.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
.+.|.|+|+.|+||||+|+.+++...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46789999999999999999998764
No 273
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=93.91 E-value=0.16 Score=56.54 Aligned_cols=100 Identities=24% Similarity=0.328 Sum_probs=63.9
Q ss_pred HHHHhc-CCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCc-CHHHHHHHHHHHhCCC----------
Q 037851 165 LQNALL-DPDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTP-DIKKVQGELADQLGMQ---------- 232 (1053)
Q Consensus 165 l~~~l~-~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~---------- 232 (1053)
.++.|. -.+...++|.|.+|+|||+|+..+.+.... .+-+.++|+-+.+.. ...++..++...=...
T Consensus 155 vID~l~pigkGqr~gIfgg~GvGKT~L~~~l~~~~a~-~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtv 233 (498)
T 1fx0_B 155 VVNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAK-AHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVA 233 (498)
T ss_dssp THHHHSCCCTTCCEEEEECSSSSHHHHHHHHHHHTTT-TCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEE
T ss_pred EeeeecccccCCeEEeecCCCCCchHHHHHHHHHHHh-hCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceE
Confidence 445554 234467899999999999999999988642 345778888888765 4667777776542111
Q ss_pred ----CCCCCC-----hhHHHHHHHHHHhc--CCcEEEEEcCCCC
Q 037851 233 ----FDEESD-----VPGRARKLYARLQK--ENKILIILDNIWE 265 (1053)
Q Consensus 233 ----~~~~~~-----~~~~~~~l~~~l~~--~~~~LlvlDdv~~ 265 (1053)
..+++. .....-.+-+++.. ++.+|+++||+..
T Consensus 234 vV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~DsitR 277 (498)
T 1fx0_B 234 LVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFR 277 (498)
T ss_dssp EEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 001110 01123344556653 7899999999843
No 274
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=93.88 E-value=0.04 Score=58.69 Aligned_cols=41 Identities=22% Similarity=0.356 Sum_probs=32.2
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcC
Q 037851 172 PDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSD 214 (1053)
Q Consensus 172 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~ 214 (1053)
++.+||+|.|-|||||||.|..++......++ .+.-|++..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~Gk--kVllID~Dp 86 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGK--RVLQIGCDP 86 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTC--CEEEEEESS
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHCCC--eEEEEecCC
Confidence 35689999999999999999999988875443 366677664
No 275
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.83 E-value=0.068 Score=57.12 Aligned_cols=42 Identities=19% Similarity=0.211 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHhc----CCCeeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 158 RMSTLKSLQNALL----DPDVTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 158 R~~~~~~l~~~l~----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
-+...+++++.+. .+....|.|+|+.|+||||+++.++....
T Consensus 4 ~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 4 THKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 3444555555543 45566799999999999999999988765
No 276
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.83 E-value=0.04 Score=54.62 Aligned_cols=29 Identities=28% Similarity=0.373 Sum_probs=25.7
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 171 DPDVTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 171 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
.....+|+|+|+.|.||||+|+.++....
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34568999999999999999999998876
No 277
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.75 E-value=0.19 Score=51.47 Aligned_cols=39 Identities=15% Similarity=0.167 Sum_probs=29.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcC
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSD 214 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~ 214 (1053)
..++.|.|.+|+||||+|.+++...... -..++|++...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~--~~~v~~~~~e~ 61 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKM--GEPGIYVALEE 61 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHT--TCCEEEEESSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEccC
Confidence 3689999999999999999887765432 23577777554
No 278
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.75 E-value=0.037 Score=53.83 Aligned_cols=26 Identities=12% Similarity=0.231 Sum_probs=22.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
.++++|+|+.|+|||||++.+.....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 36899999999999999999988653
No 279
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.70 E-value=0.032 Score=53.81 Aligned_cols=25 Identities=28% Similarity=0.357 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 175 TITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 175 ~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
.+|+|+|+.|+||||+++.++....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999998754
No 280
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.70 E-value=0.054 Score=54.86 Aligned_cols=38 Identities=24% Similarity=0.275 Sum_probs=29.1
Q ss_pred HHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 162 LKSLQNALLDPDVTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 162 ~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
.+.+.+.+......+|.|+|.+|+|||||+..+.....
T Consensus 26 a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 26 ADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp HHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 34444444445678999999999999999999998754
No 281
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.70 E-value=0.036 Score=54.50 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=22.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHH
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQ 197 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~ 197 (1053)
...+++|+|+.|+||||+++.++..
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3478999999999999999999764
No 282
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.63 E-value=0.05 Score=51.69 Aligned_cols=28 Identities=25% Similarity=0.300 Sum_probs=24.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhh
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKK 200 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 200 (1053)
..++++|+|..|+|||||+..+....+.
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 3579999999999999999999988763
No 283
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.61 E-value=0.04 Score=53.54 Aligned_cols=22 Identities=32% Similarity=0.383 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 037851 175 TITGVYGMGGLGKTTLVKEVAR 196 (1053)
Q Consensus 175 ~vi~I~G~~GiGKTtLa~~v~~ 196 (1053)
.+|.|.|++|+||||+|+.+.+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999987
No 284
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=93.60 E-value=0.037 Score=60.58 Aligned_cols=50 Identities=24% Similarity=0.288 Sum_probs=36.5
Q ss_pred CCcccccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 150 KGYEAFESRMSTLKSLQNALLDPDVTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 150 ~~~~~~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
.....++|.+..++.+......+...-+.|+|++|+|||++|+.+++...
T Consensus 21 ~~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 21 FPFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCc
Confidence 34456889887666554444333334588999999999999999998764
No 285
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.60 E-value=0.33 Score=51.14 Aligned_cols=89 Identities=25% Similarity=0.240 Sum_probs=51.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCc-CHHHHHHHHHHHhCCCCC---CCCChhHHHHHHHHH
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTP-DIKKVQGELADQLGMQFD---EESDVPGRARKLYAR 249 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~~ 249 (1053)
..++.++|.+|+||||++..++......+ ..+.+++..... ...+.++...+..+...- ...+.........+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g--~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~ 175 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKG--FKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK 175 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTT--CCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHH
Confidence 57999999999999999999998876432 245556554322 233334445555554321 112332333444455
Q ss_pred HhcCCcEEEEEcCCC
Q 037851 250 LQKENKILIILDNIW 264 (1053)
Q Consensus 250 l~~~~~~LlvlDdv~ 264 (1053)
+...+.=++|+|-.-
T Consensus 176 ~~~~~~D~ViIDTpg 190 (297)
T 1j8m_F 176 FLSEKMEIIIVDTAG 190 (297)
T ss_dssp HHHTTCSEEEEECCC
T ss_pred HHhCCCCEEEEeCCC
Confidence 531223377888753
No 286
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.58 E-value=0.044 Score=54.39 Aligned_cols=27 Identities=33% Similarity=0.422 Sum_probs=23.6
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHHHh
Q 037851 172 PDVTITGVYGMGGLGKTTLVKEVARQV 198 (1053)
Q Consensus 172 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 198 (1053)
....+|+|+|+.|+||||+|+.++...
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 345799999999999999999998876
No 287
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.56 E-value=0.085 Score=55.48 Aligned_cols=29 Identities=14% Similarity=0.055 Sum_probs=25.4
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHHHhhh
Q 037851 172 PDVTITGVYGMGGLGKTTLVKEVARQVKK 200 (1053)
Q Consensus 172 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 200 (1053)
.+..+|+|+|..|+||||||+.+......
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 45679999999999999999999887764
No 288
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.55 E-value=0.044 Score=53.92 Aligned_cols=25 Identities=32% Similarity=0.506 Sum_probs=23.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 175 TITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 175 ~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
.+|.|.|+.|+||||+|+.+++...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999999876
No 289
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.53 E-value=0.048 Score=53.66 Aligned_cols=26 Identities=31% Similarity=0.356 Sum_probs=23.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
..+|.|.|+.|+||||+|+.+.+...
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999998763
No 290
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.50 E-value=0.053 Score=52.99 Aligned_cols=28 Identities=29% Similarity=0.417 Sum_probs=24.9
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhh
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKK 200 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 200 (1053)
...+|.|+|+.|+||||+|+.++.....
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4578999999999999999999998764
No 291
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=93.47 E-value=0.042 Score=59.58 Aligned_cols=44 Identities=18% Similarity=0.179 Sum_probs=36.6
Q ss_pred cccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 154 AFESRMSTLKSLQNALLDPDVTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 154 ~~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
.++|+++.++.+...+..+ .-+.++|++|+|||++|+.+++...
T Consensus 28 ~i~g~~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~~~ 71 (331)
T 2r44_A 28 VVVGQKYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKTMD 71 (331)
T ss_dssp TCCSCHHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHHTT
T ss_pred ceeCcHHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHHhC
Confidence 5789998888888777643 3678999999999999999998764
No 292
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=93.46 E-value=0.2 Score=52.97 Aligned_cols=88 Identities=20% Similarity=0.208 Sum_probs=49.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCH--HHHHHHHHHHhCCCCCC---CCChhHH-HHHH
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDI--KKVQGELADQLGMQFDE---ESDVPGR-ARKL 246 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~--~~~~~~i~~~l~~~~~~---~~~~~~~-~~~l 246 (1053)
...+|.|+|.+|+||||++..++......+ ..+.++.... +.. .+-+...++..+...-. ..+.... ...+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g--~kV~lv~~D~-~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al 179 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEG--KSVVLAAADT-FRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAV 179 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTT--CCEEEEEECT-TCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcC--CEEEEEcccc-ccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 457999999999999999999998876432 2355555432 222 22234455555543211 1122111 1233
Q ss_pred HHHHhcCCcEEEEEcCCC
Q 037851 247 YARLQKENKILIILDNIW 264 (1053)
Q Consensus 247 ~~~l~~~~~~LlvlDdv~ 264 (1053)
...+. .+.-++|+|..-
T Consensus 180 ~~a~~-~~~dvvIiDtpg 196 (306)
T 1vma_A 180 AHALA-RNKDVVIIDTAG 196 (306)
T ss_dssp HHHHH-TTCSEEEEEECC
T ss_pred HHHHh-cCCCEEEEECCC
Confidence 33343 344478888663
No 293
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.45 E-value=0.04 Score=53.53 Aligned_cols=26 Identities=38% Similarity=0.418 Sum_probs=23.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
.++|.|+|+.|+||||+|+.+++...
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 46789999999999999999998764
No 294
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.43 E-value=0.037 Score=54.98 Aligned_cols=26 Identities=23% Similarity=0.320 Sum_probs=23.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
..+|+|.|+.|+||||+|+.++....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999998763
No 295
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=93.42 E-value=0.17 Score=54.83 Aligned_cols=57 Identities=28% Similarity=0.400 Sum_probs=37.9
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhc---CCC-CeEEEEEEcCCcCHHHHHHHHHHHhC
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKKD---KHF-DEVVFAEVSDTPDIKKVQGELADQLG 230 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~~f-~~~~wv~~s~~~~~~~~~~~i~~~l~ 230 (1053)
...++.|+|..|+|||||++.++...... +.. ..++|++....+....+ ..+++..+
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~ 190 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRG 190 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcC
Confidence 34799999999999999999999875311 111 24588887665543333 34555443
No 296
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.41 E-value=0.22 Score=52.57 Aligned_cols=89 Identities=18% Similarity=0.235 Sum_probs=49.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcC-HHHHHHHHHHHhCCCCC---CCCChhHHHHHHHH
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPD-IKKVQGELADQLGMQFD---EESDVPGRARKLYA 248 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~-~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~ 248 (1053)
...+++|+|.+|+||||++..++......+ ..+.++....... ....+....+..+...- ...+..........
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~--~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~ 174 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKG--RRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEE 174 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTT--CCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHH
Confidence 347999999999999999999998876432 2345555432221 11223344455544321 11222233333344
Q ss_pred HHhcCCcEEEEEcCC
Q 037851 249 RLQKENKILIILDNI 263 (1053)
Q Consensus 249 ~l~~~~~~LlvlDdv 263 (1053)
.+...+.=+||+|-.
T Consensus 175 ~~~~~~~D~viiDtp 189 (295)
T 1ls1_A 175 KARLEARDLILVDTA 189 (295)
T ss_dssp HHHHHTCCEEEEECC
T ss_pred HHHhCCCCEEEEeCC
Confidence 442233457788876
No 297
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=93.40 E-value=0.035 Score=59.45 Aligned_cols=51 Identities=16% Similarity=0.139 Sum_probs=35.5
Q ss_pred HHHHHhc-CCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcC-CCCeEEEEEEcCC
Q 037851 164 SLQNALL-DPDVTITGVYGMGGLGKTTLVKEVARQVKKDK-HFDEVVFAEVSDT 215 (1053)
Q Consensus 164 ~l~~~l~-~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~f~~~~wv~~s~~ 215 (1053)
++++.+. -.+...++|+|.+|+|||+|++.+++....+. .+. ++++-+.+.
T Consensus 164 raID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~-~V~~lIGER 216 (427)
T 3l0o_A 164 RLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTI-RIILLIDER 216 (427)
T ss_dssp HHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSE-EEEEECSCC
T ss_pred hhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeE-EEEEEeccC
Confidence 5566665 23446889999999999999999998765322 222 356666654
No 298
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=93.38 E-value=0.63 Score=49.69 Aligned_cols=58 Identities=26% Similarity=0.348 Sum_probs=37.7
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcC-CcCHHHHHHHHHHHhCC
Q 037851 172 PDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSD-TPDIKKVQGELADQLGM 231 (1053)
Q Consensus 172 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~ 231 (1053)
....+++|+|+.|+||||+++.++...+..+ . .+.++...- .....+.+....+.++.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~-g-~V~l~g~D~~r~~a~eql~~~~~~~gv 185 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHG-F-SVVIAASDTFRAGAIEQLEEHAKRIGV 185 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTT-C-CEEEEEECCSSTTHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcC-C-EEEEEeecccccchHHHHHHHHHHcCc
Confidence 4568999999999999999999998876432 1 233443322 12344445555666654
No 299
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.35 E-value=0.23 Score=52.80 Aligned_cols=27 Identities=22% Similarity=0.272 Sum_probs=23.9
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
...+|+|.|..|+||||+|+.+.....
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 456999999999999999999987765
No 300
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.34 E-value=0.049 Score=53.48 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=23.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 175 TITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 175 ~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
.+|.|.|+.|+||||+|+.+++...
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999999775
No 301
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.26 E-value=0.051 Score=56.14 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 175 TITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 175 ~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
++|.|+|+.|+||||||+.++....
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999998764
No 302
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.23 E-value=0.044 Score=53.00 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 175 TITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 175 ~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
+.|.|.|+.|+||||+|+.++....
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3689999999999999999998764
No 303
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.21 E-value=0.056 Score=52.20 Aligned_cols=25 Identities=36% Similarity=0.529 Sum_probs=22.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHh
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQV 198 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~ 198 (1053)
..+|+|+|+.|.||||+|+.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998765
No 304
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.17 E-value=0.053 Score=54.14 Aligned_cols=27 Identities=22% Similarity=0.288 Sum_probs=23.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
...+|+|+|+.|+|||||++.+.....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 457999999999999999999987653
No 305
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.15 E-value=0.057 Score=52.70 Aligned_cols=25 Identities=24% Similarity=0.298 Sum_probs=22.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHH
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQ 197 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~ 197 (1053)
....|+|+|+.|+||||+|+.+++.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999886
No 306
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.12 E-value=0.046 Score=54.41 Aligned_cols=27 Identities=33% Similarity=0.464 Sum_probs=23.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
..++|.|+|+.|+||||+++.+.....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 346899999999999999999988763
No 307
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.10 E-value=0.057 Score=51.75 Aligned_cols=27 Identities=26% Similarity=0.401 Sum_probs=23.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
...+|+|.|+.|+||||+|+.+++...
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhC
Confidence 346899999999999999999998765
No 308
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.08 E-value=0.085 Score=55.54 Aligned_cols=26 Identities=27% Similarity=0.244 Sum_probs=23.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHh
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQV 198 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 198 (1053)
...+|.|.|++|+||||+|+.+....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998765
No 309
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=93.04 E-value=0.085 Score=57.93 Aligned_cols=45 Identities=24% Similarity=0.212 Sum_probs=35.3
Q ss_pred ccchHHHHHHHHHHhc-------------C--CCeeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 155 FESRMSTLKSLQNALL-------------D--PDVTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 155 ~~gR~~~~~~l~~~l~-------------~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
++|.+..++.+...+. . .....|.++|++|+|||++|+.+++...
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 5788888888777662 1 1345789999999999999999998863
No 310
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.02 E-value=0.062 Score=54.20 Aligned_cols=40 Identities=20% Similarity=0.307 Sum_probs=30.1
Q ss_pred HHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 160 STLKSLQNALLDPDVTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 160 ~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
+..+.+.+.+...+.++|.|+|.+|+|||||+..+.....
T Consensus 16 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 16 RLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3344444444344678999999999999999999988764
No 311
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=92.99 E-value=0.67 Score=63.17 Aligned_cols=79 Identities=15% Similarity=0.143 Sum_probs=49.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhcCC
Q 037851 175 TITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLGMQFDEESDVPGRARKLYARLQKEN 254 (1053)
Q Consensus 175 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 254 (1053)
+-|.++|++|+|||++|+.+..... .+ ..+.++.+...+...+++.+...+............. -..++
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~~---~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P-------~~~gk 1336 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNSS---LY-DVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLP-------KSDIK 1336 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCS---SC-EEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEE-------BSSSS
T ss_pred CeEEEECCCCCCHHHHHHHHHhcCC---CC-ceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccC-------CCCCc
Confidence 5678999999999999987765431 22 3556788887787777777766554321000000000 00367
Q ss_pred cEEEEEcCCC
Q 037851 255 KILIILDNIW 264 (1053)
Q Consensus 255 ~~LlvlDdv~ 264 (1053)
+.++++||+.
T Consensus 1337 ~~VlFiDEin 1346 (2695)
T 4akg_A 1337 NLVLFCDEIN 1346 (2695)
T ss_dssp CEEEEEETTT
T ss_pred eEEEEecccc
Confidence 8999999964
No 312
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=92.96 E-value=0.77 Score=52.04 Aligned_cols=38 Identities=18% Similarity=0.278 Sum_probs=28.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEE
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEV 212 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 212 (1053)
..++|.|+|.+|+||||++..++.....++ . .+..|+.
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G-~-kVllVd~ 137 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKG-W-KTCLICA 137 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTT-C-CEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCC-C-eEEEEec
Confidence 467999999999999999999998876432 2 3444555
No 313
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=92.92 E-value=0.069 Score=53.26 Aligned_cols=28 Identities=21% Similarity=0.303 Sum_probs=25.0
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 172 PDVTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 172 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
.+.++|.|.|++|+||||.|+.+++.+.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 3568999999999999999999998864
No 314
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.92 E-value=0.06 Score=53.07 Aligned_cols=27 Identities=26% Similarity=0.292 Sum_probs=23.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
+..+|.|.|+.|+||||+|+.+++...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346899999999999999999998764
No 315
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=92.91 E-value=0.061 Score=53.52 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=22.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHh
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQV 198 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~ 198 (1053)
..+++|+|+.|+|||||++.+....
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998764
No 316
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=92.91 E-value=0.06 Score=53.50 Aligned_cols=24 Identities=25% Similarity=0.584 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 176 ITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 176 vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
+|+|.|+.|+||||+|+.+++...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999998765
No 317
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.87 E-value=0.049 Score=53.14 Aligned_cols=25 Identities=24% Similarity=0.429 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 175 TITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 175 ~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
++|.|.|+.|+||||+|+.++....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999998764
No 318
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.85 E-value=0.1 Score=47.31 Aligned_cols=54 Identities=17% Similarity=0.284 Sum_probs=30.4
Q ss_pred EEEccCCCCc--ccchhhhccCCCCeeeccCcccccccCcchhcCCccCceeecccccc
Q 037851 577 ILSLQGSKIE--QLPREIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSI 633 (1053)
Q Consensus 577 ~L~l~~~~l~--~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 633 (1053)
+++.+++.++ .+|..+. .+|++|+|++ +.+..++++.+..+++|+.|++.+|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCC-CcCCccChhhhhhccccCEEEecCCCe
Confidence 4455555555 5554322 2466666666 456666665566666666666666644
No 319
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=92.85 E-value=0.061 Score=52.70 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 037851 175 TITGVYGMGGLGKTTLVKEVAR 196 (1053)
Q Consensus 175 ~vi~I~G~~GiGKTtLa~~v~~ 196 (1053)
.+++|+|+.|.||||+++.++.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999976
No 320
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.85 E-value=0.066 Score=52.72 Aligned_cols=26 Identities=23% Similarity=0.227 Sum_probs=22.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
..+|.|.|+.|+||||+|+.+++...
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 36899999999999999999988753
No 321
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=92.83 E-value=0.053 Score=52.60 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 175 TITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 175 ~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
+.|.|+|++|+|||||++.+..+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 4588999999999999999987653
No 322
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.82 E-value=0.074 Score=51.90 Aligned_cols=26 Identities=23% Similarity=0.230 Sum_probs=23.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
..+|.|.|+.|+||||+|+.+++...
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999998753
No 323
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=92.78 E-value=0.068 Score=52.29 Aligned_cols=27 Identities=15% Similarity=0.267 Sum_probs=23.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
..++|+|+|+.|+|||||++.+.....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 457899999999999999999997653
No 324
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=92.78 E-value=0.12 Score=52.82 Aligned_cols=28 Identities=18% Similarity=0.023 Sum_probs=24.3
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 172 PDVTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 172 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
....+|+|.|+.|+||||+|+.+.+...
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3557899999999999999999998763
No 325
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.77 E-value=0.072 Score=52.91 Aligned_cols=26 Identities=27% Similarity=0.383 Sum_probs=23.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHh
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQV 198 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 198 (1053)
+..+|+|.|+.|+||||+|+.+++..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999998765
No 326
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=92.75 E-value=0.055 Score=61.52 Aligned_cols=44 Identities=14% Similarity=0.163 Sum_probs=36.3
Q ss_pred cccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 154 AFESRMSTLKSLQNALLDPDVTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 154 ~~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
.++|++..++.+...+..+ .-|.++|++|+|||+||+.+++...
T Consensus 23 ~ivGq~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred hhHHHHHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHHHh
Confidence 4789988888887776543 4678999999999999999998664
No 327
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=92.74 E-value=0.1 Score=57.66 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=22.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
...+.++|++|+|||++|+.+++...
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 34688999999999999999998763
No 328
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.68 E-value=0.07 Score=52.95 Aligned_cols=26 Identities=27% Similarity=0.307 Sum_probs=23.1
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHHH
Q 037851 172 PDVTITGVYGMGGLGKTTLVKEVARQ 197 (1053)
Q Consensus 172 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 197 (1053)
++..+|+|+|+.|+||||+|+.+.+.
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 45679999999999999999999874
No 329
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=92.67 E-value=0.47 Score=50.75 Aligned_cols=62 Identities=11% Similarity=0.102 Sum_probs=42.0
Q ss_pred HHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHH
Q 037851 161 TLKSLQNALLDPDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQ 228 (1053)
Q Consensus 161 ~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 228 (1053)
.++++..-+. ...++.|.|.+|+||||+|..++...... =..++|++. .-+..++...++..
T Consensus 35 ~LD~~~gGl~--~G~LiiIaG~pG~GKTt~al~ia~~~a~~--g~~Vl~fSl--Ems~~ql~~Rlls~ 96 (338)
T 4a1f_A 35 QLDNYTSGFN--KGSLVIIGARPSMGKTSLMMNMVLSALND--DRGVAVFSL--EMSAEQLALRALSD 96 (338)
T ss_dssp HHHHHHCSBC--TTCEEEEEECTTSCHHHHHHHHHHHHHHT--TCEEEEEES--SSCHHHHHHHHHHH
T ss_pred HHHHHhcCCC--CCcEEEEEeCCCCCHHHHHHHHHHHHHHc--CCeEEEEeC--CCCHHHHHHHHHHH
Confidence 4555543222 23689999999999999999999887642 235677665 34566676666544
No 330
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.67 E-value=0.069 Score=53.19 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=22.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHh
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQV 198 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~ 198 (1053)
..+|+|+|+.|+||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998765
No 331
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=92.66 E-value=0.051 Score=54.46 Aligned_cols=110 Identities=13% Similarity=0.076 Sum_probs=60.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhc
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLGMQFDEESDVPGRARKLYARLQK 252 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 252 (1053)
...++.|+|..|.||||++..++++...++ ..++.+...... + -...+++.++....... . .....+.+.+.+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g--~kVli~~~~~d~--r-~~~~i~srlG~~~~~~~-~-~~~~~i~~~i~~ 83 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYAD--VKYLVFKPKIDT--R-SIRNIQSRTGTSLPSVE-V-ESAPEILNYIMS 83 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTT--CCEEEEEECCCG--G-GCSSCCCCCCCSSCCEE-E-SSTHHHHHHHHS
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcC--CEEEEEEeccCc--h-HHHHHHHhcCCCccccc-c-CCHHHHHHHHHH
Confidence 347899999999999999999998876432 234445443322 1 12234455544322111 0 111234444432
Q ss_pred ----CCcEEEEEcCCCCc--cchhhhcCCCCCCCCCcEEEEEecCh
Q 037851 253 ----ENKILIILDNIWED--LDLEKVGVPSGNDCRGCKVLLTARDR 292 (1053)
Q Consensus 253 ----~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtR~~ 292 (1053)
++.-+||+|.+... ++.+.+.. +.+ .|-.||+|-++.
T Consensus 84 ~~~~~~~dvViIDEaQ~l~~~~ve~l~~-L~~--~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 84 NSFNDETKVIGIDEVQFFDDRICEVANI-LAE--NGFVVIISGLDK 126 (223)
T ss_dssp TTSCTTCCEEEECSGGGSCTHHHHHHHH-HHH--TTCEEEEECCSB
T ss_pred HhhCCCCCEEEEecCccCcHHHHHHHHH-HHh--CCCeEEEEeccc
Confidence 23459999998543 22222211 111 267899998854
No 332
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=92.66 E-value=0.076 Score=53.09 Aligned_cols=27 Identities=33% Similarity=0.457 Sum_probs=23.9
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
...+|+|+|+.|.|||||++.+.....
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 457899999999999999999998754
No 333
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=92.65 E-value=0.054 Score=52.97 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 175 TITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 175 ~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
++++|+|+.|+|||||++.+.....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5789999999999999999998764
No 334
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.61 E-value=0.06 Score=51.82 Aligned_cols=25 Identities=32% Similarity=0.353 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 175 TITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 175 ~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
.+|.|.|+.|+||||+|+.+.+...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999998764
No 335
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=92.59 E-value=0.18 Score=60.56 Aligned_cols=151 Identities=14% Similarity=0.229 Sum_probs=79.3
Q ss_pred CcccccchHHHHHHHHHHhcC-------------CCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcC
Q 037851 151 GYEAFESRMSTLKSLQNALLD-------------PDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPD 217 (1053)
Q Consensus 151 ~~~~~~gR~~~~~~l~~~l~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 217 (1053)
....+.|-++.++++.+.+.- ...+-|.++|++|.|||.+|+++++.... -++.++.
T Consensus 475 ~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~-------~f~~v~~--- 544 (806)
T 3cf2_A 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA-------NFISIKG--- 544 (806)
T ss_dssp CSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTC-------EEEECCH---
T ss_pred CHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCC-------ceEEecc---
Confidence 344566777777777655431 12356789999999999999999997652 1333331
Q ss_pred HHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCCcc--------c--------hhhhcCCCC--CC
Q 037851 218 IKKVQGELADQLGMQFDEESDVPGRARKLYARLQKENKILIILDNIWEDL--------D--------LEKVGVPSG--ND 279 (1053)
Q Consensus 218 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--------~--------~~~l~~~~~--~~ 279 (1053)
. +++... ....+..+..+.+.-++..+.+|++|+++... . ...+...+. ..
T Consensus 545 -~----~l~s~~------vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~ 613 (806)
T 3cf2_A 545 -P----ELLTMW------FGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST 613 (806)
T ss_dssp -H----HHHTTT------CSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCS
T ss_pred -c----hhhccc------cchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCC
Confidence 1 122111 11122455666666656789999999986431 0 111111111 11
Q ss_pred CCCcEEEEEecChHHHH----hhC--CCcccccCCCHHHHHHHHHHHhC
Q 037851 280 CRGCKVLLTARDRHVLE----SIG--SKTLRIDVLNDEEAWTLFKKMTG 322 (1053)
Q Consensus 280 ~~gs~iivTtR~~~v~~----~~~--~~~~~l~~L~~~~~~~lf~~~~~ 322 (1053)
..+.-||-||..++..+ .-| ...+.+..-+.++-.++|+.+..
T Consensus 614 ~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~ 662 (806)
T 3cf2_A 614 KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLR 662 (806)
T ss_dssp SSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSS
T ss_pred CCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhc
Confidence 22334444555443221 112 55667766666666777776654
No 336
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.59 E-value=0.078 Score=53.03 Aligned_cols=27 Identities=15% Similarity=0.245 Sum_probs=24.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhh
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVKK 200 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~~ 200 (1053)
..+|.|.|+.|+||||+|+.+++....
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 368999999999999999999998763
No 337
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.57 E-value=0.074 Score=54.94 Aligned_cols=28 Identities=18% Similarity=0.323 Sum_probs=24.1
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 172 PDVTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 172 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
.+..+|+|.|+.|+||||+|+.+.....
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3557899999999999999999998754
No 338
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.57 E-value=0.07 Score=54.10 Aligned_cols=25 Identities=32% Similarity=0.503 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 175 TITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 175 ~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
.+|+|+|+.|+||||+|+.+.....
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999988654
No 339
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=92.51 E-value=0.08 Score=51.14 Aligned_cols=24 Identities=38% Similarity=0.526 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 176 ITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 176 vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
.++|+|+.|+|||||++.++....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998765
No 340
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.50 E-value=0.072 Score=52.65 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=22.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 175 TITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 175 ~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
.+|+|.|+.|+||||+|+.+++...
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 6899999999999999999998764
No 341
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.48 E-value=0.076 Score=54.65 Aligned_cols=27 Identities=22% Similarity=0.343 Sum_probs=23.9
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
+..+|+|+|+.|+||||+++.+++...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 357999999999999999999998764
No 342
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.45 E-value=0.077 Score=55.05 Aligned_cols=26 Identities=27% Similarity=0.540 Sum_probs=23.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
..+|.|.|++|+||||+|+.++....
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998754
No 343
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.44 E-value=0.086 Score=52.23 Aligned_cols=27 Identities=22% Similarity=0.210 Sum_probs=23.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
...+|.|.|+.|+||||+|+.+++...
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345899999999999999999998764
No 344
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=92.43 E-value=0.16 Score=54.29 Aligned_cols=44 Identities=20% Similarity=0.296 Sum_probs=32.9
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCc
Q 037851 171 DPDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTP 216 (1053)
Q Consensus 171 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 216 (1053)
....++|+|+|-||+||||+|..++......+. .++-|+.....
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~--~VlliD~D~~~ 81 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAAFSILGK--RVLQIGCDPKH 81 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHHHTTC--CEEEEEESSSC
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHHHHHCCC--eEEEEeCCCCC
Confidence 346789999999999999999999998875432 46667776433
No 345
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=92.43 E-value=0.57 Score=51.79 Aligned_cols=38 Identities=24% Similarity=0.250 Sum_probs=28.9
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEE
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEV 212 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 212 (1053)
...++.|+|.+|+||||++..++......+ ..+..+..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g--~~Vllvd~ 134 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKG--RRPLLVAA 134 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTT--CCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEeec
Confidence 347899999999999999999998887432 23444544
No 346
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=92.37 E-value=0.16 Score=49.18 Aligned_cols=117 Identities=19% Similarity=0.115 Sum_probs=59.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCC---cCHHHHHHHHH---HHhCCCCCCCC-C----h---h
Q 037851 175 TITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDT---PDIKKVQGELA---DQLGMQFDEES-D----V---P 240 (1053)
Q Consensus 175 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~---~~~~~~~~~i~---~~l~~~~~~~~-~----~---~ 240 (1053)
..|.|++..|.||||.|--.+-+....+ -.+.++.+.+. ....+++..+. .+.+....... + . .
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G--~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~ 106 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHG--KNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACM 106 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTT--CCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHH
Confidence 4666677777999999999988866332 24555655442 22333333320 00011111000 1 0 1
Q ss_pred HHHHHHHHHHhcCCcEEEEEcCCCCc-----cchhhhcCCCCCCCCCcEEEEEecChH
Q 037851 241 GRARKLYARLQKENKILIILDNIWED-----LDLEKVGVPSGNDCRGCKVLLTARDRH 293 (1053)
Q Consensus 241 ~~~~~l~~~l~~~~~~LlvlDdv~~~-----~~~~~l~~~~~~~~~gs~iivTtR~~~ 293 (1053)
.......+.+..++-=|||||++-.. ...+.+...+.......-||+|+|...
T Consensus 107 ~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap 164 (196)
T 1g5t_A 107 AVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCH 164 (196)
T ss_dssp HHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCC
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCc
Confidence 12233344443455669999998332 222222222222224567999999863
No 347
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=92.35 E-value=0.07 Score=53.02 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 037851 175 TITGVYGMGGLGKTTLVKEVAR 196 (1053)
Q Consensus 175 ~vi~I~G~~GiGKTtLa~~v~~ 196 (1053)
.+|+|+|+.|+||||+|+.++.
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999987
No 348
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.35 E-value=0.21 Score=65.41 Aligned_cols=85 Identities=21% Similarity=0.230 Sum_probs=57.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhCCCCCC-----CCChhHHHHHHH
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLGMQFDE-----ESDVPGRARKLY 247 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~ 247 (1053)
..++|.|+|++|+|||+||.+++...... =..++|+++....+... ++.++.+.+. ....+.....+.
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~--G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence 45799999999999999999998876532 23578888888776554 5566643221 112223334444
Q ss_pred HHHhcCCcEEEEEcCCC
Q 037851 248 ARLQKENKILIILDNIW 264 (1053)
Q Consensus 248 ~~l~~~~~~LlvlDdv~ 264 (1053)
+.....+.-+||+|.+.
T Consensus 1499 ~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHhcCCCCEEEEcChh
Confidence 44445678899999985
No 349
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.34 E-value=0.15 Score=54.22 Aligned_cols=42 Identities=24% Similarity=0.294 Sum_probs=29.9
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEc
Q 037851 172 PDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVS 213 (1053)
Q Consensus 172 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s 213 (1053)
....+|+|+|..|+|||||++.+..-......-..+.+|.-.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd 129 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTD 129 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGG
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecC
Confidence 345799999999999999999999876532111235555443
No 350
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.31 E-value=0.084 Score=50.48 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 176 ITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 176 vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
.|.|.|+.|+||||+|+.+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998764
No 351
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=92.30 E-value=0.053 Score=52.77 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=19.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
..+|.|.|+.|+||||+|+.+.+...
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35899999999999999999988754
No 352
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.29 E-value=0.076 Score=50.82 Aligned_cols=36 Identities=25% Similarity=0.260 Sum_probs=27.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEE
Q 037851 175 TITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFA 210 (1053)
Q Consensus 175 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv 210 (1053)
++++|+|..|.|||||++.+.......+.-.+.+.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~ 38 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKR 38 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEE
Confidence 589999999999999999999887654222344443
No 353
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=92.24 E-value=0.065 Score=52.99 Aligned_cols=26 Identities=27% Similarity=0.345 Sum_probs=22.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
.++++|+|+.|+|||||++.+.....
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 36889999999999999999987653
No 354
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.21 E-value=0.087 Score=51.71 Aligned_cols=26 Identities=27% Similarity=0.308 Sum_probs=23.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
..+|+|.|+.|+||||+|+.+++...
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999988754
No 355
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=92.18 E-value=0.1 Score=55.23 Aligned_cols=28 Identities=29% Similarity=0.464 Sum_probs=25.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhh
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKK 200 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 200 (1053)
+..+++|+|++|+||||+++.++.....
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~ 128 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN 128 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 4579999999999999999999988764
No 356
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=92.14 E-value=0.085 Score=52.55 Aligned_cols=26 Identities=35% Similarity=0.580 Sum_probs=22.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHh
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQV 198 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 198 (1053)
...+|+|+|+.|.||||+|+.+....
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 34789999999999999999997643
No 357
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.11 E-value=0.22 Score=45.15 Aligned_cols=31 Identities=26% Similarity=0.419 Sum_probs=13.1
Q ss_pred CcEEEccCCCCcccchh-hhccCCCCeeeccC
Q 037851 575 LEILSLQGSKIEQLPRE-IGQLTQLKLLDLSN 605 (1053)
Q Consensus 575 L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~ 605 (1053)
|++|+|++|.|+.+|.. +..+++|++|+|.+
T Consensus 33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 64 (130)
T 3rfe_A 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGA 64 (130)
T ss_dssp CSEEECTTSCCSSCCTTTGGGCTTCCEEECCS
T ss_pred CCEEECCCCcCCccChhhhhhccccCEEEecC
Confidence 34444444444444332 23344444444444
No 358
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.10 E-value=0.089 Score=51.48 Aligned_cols=27 Identities=26% Similarity=0.365 Sum_probs=23.7
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHHHh
Q 037851 172 PDVTITGVYGMGGLGKTTLVKEVARQV 198 (1053)
Q Consensus 172 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 198 (1053)
....+|+|.|+.|+||||+|+.+.+..
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhc
Confidence 346799999999999999999998864
No 359
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=92.06 E-value=0.093 Score=52.87 Aligned_cols=26 Identities=19% Similarity=0.199 Sum_probs=23.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
...|.|.|+.|+||||+|+.+++...
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 45799999999999999999998764
No 360
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.05 E-value=0.092 Score=52.48 Aligned_cols=32 Identities=19% Similarity=0.196 Sum_probs=26.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCe
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVKKDKHFDE 206 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~ 206 (1053)
..+|+|.|+.|+||||+|+.+.+.... ..++.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~-~~~~~ 41 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKN-NNVEV 41 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHH-TTCCE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH-cCCcE
Confidence 468999999999999999999988753 34554
No 361
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.01 E-value=0.099 Score=52.37 Aligned_cols=32 Identities=13% Similarity=0.158 Sum_probs=26.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCe
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVKKDKHFDE 206 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~ 206 (1053)
..+|+|.|+.|+||||+|+.+.+.... ..++.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~-~~~~v 40 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCA-AGHRA 40 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHH-TTCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH-cCCcE
Confidence 468999999999999999999998753 23444
No 362
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=91.99 E-value=0.094 Score=54.10 Aligned_cols=27 Identities=33% Similarity=0.423 Sum_probs=24.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
...+|+|+|+.|.||||+++.+++...
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 446999999999999999999998764
No 363
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=91.97 E-value=0.12 Score=53.31 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=23.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
...+|.|+|++|+||||+|+.+.....
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 457899999999999999999988754
No 364
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=91.96 E-value=0.077 Score=50.98 Aligned_cols=22 Identities=27% Similarity=0.531 Sum_probs=19.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHH
Q 037851 173 DVTITGVYGMGGLGKTTLVKEV 194 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v 194 (1053)
...+++|+|+.|.|||||++.+
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHH
Confidence 3468999999999999999963
No 365
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=91.92 E-value=0.096 Score=51.46 Aligned_cols=24 Identities=33% Similarity=0.484 Sum_probs=22.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 176 ITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 176 vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
+|+|.|+.|+||||+|+.+.+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999874
No 366
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=91.84 E-value=0.35 Score=53.34 Aligned_cols=102 Identities=20% Similarity=0.224 Sum_probs=45.6
Q ss_pred cccCCCceeEEeecCccccCCC-cccccCccCcEEEcCCcccCC--ccccCCCCCCcEEEccCCCCcccch-hhhccCCC
Q 037851 523 IFIGTPKLKVLDFTRMRLLSLP-SSIHLLTDLRTLCLDGCELED--IRVIGELKDLEILSLQGSKIEQLPR-EIGQLTQL 598 (1053)
Q Consensus 523 ~~~~~~~Lr~L~l~~~~~~~lp-~~i~~l~~Lr~L~L~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L 598 (1053)
.|.++..|+.+.+..+ ++.+. ..+..+.+|+.+.+..+ +.. ...+..+.+|+.+.+.++.++.++. .+.++.+|
T Consensus 235 ~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L 312 (379)
T 4h09_A 235 AFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKL 312 (379)
T ss_dssp TTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTC
T ss_pred cccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCC
Confidence 3444455555554432 22222 23444445555554322 222 1334455555555555555554432 33445555
Q ss_pred CeeeccCcccccccCcchhcCCccCceeec
Q 037851 599 KLLDLSNCSKLKVIAPNVLSNLSQLEELYM 628 (1053)
Q Consensus 599 ~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l 628 (1053)
+.+.+.. .+..+....+.++++|+.+.+
T Consensus 313 ~~i~lp~--~l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 313 SSVTLPT--ALKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp CEEECCT--TCCEECTTTTTTCTTCCCCCC
T ss_pred CEEEcCc--cccEEHHHHhhCCCCCCEEEE
Confidence 5555543 244444444455555555544
No 367
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=91.80 E-value=0.14 Score=49.83 Aligned_cols=38 Identities=18% Similarity=0.208 Sum_probs=28.0
Q ss_pred HHHHHHHhcC-CCeeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 162 LKSLQNALLD-PDVTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 162 ~~~l~~~l~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
+..+..++.. ++...+.|+|++|+||||+|..+++...
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4444444432 2334799999999999999999998864
No 368
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=91.78 E-value=0.093 Score=52.28 Aligned_cols=27 Identities=19% Similarity=0.304 Sum_probs=23.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
...+++|+|+.|+|||||++.+..-..
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 346999999999999999999987653
No 369
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=91.77 E-value=0.093 Score=52.22 Aligned_cols=22 Identities=36% Similarity=0.422 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 037851 175 TITGVYGMGGLGKTTLVKEVAR 196 (1053)
Q Consensus 175 ~vi~I~G~~GiGKTtLa~~v~~ 196 (1053)
.+|+|+|+.|.||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 370
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=91.74 E-value=0.092 Score=53.23 Aligned_cols=26 Identities=19% Similarity=0.330 Sum_probs=22.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
...|.|.|+.|+||||+|+.+++...
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999998653
No 371
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=91.70 E-value=0.092 Score=53.01 Aligned_cols=26 Identities=15% Similarity=0.100 Sum_probs=23.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
...|.|.|+.|+||||+|+.+++...
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999998764
No 372
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=91.62 E-value=0.087 Score=52.95 Aligned_cols=26 Identities=27% Similarity=0.478 Sum_probs=22.9
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHh
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQV 198 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 198 (1053)
...+++|+|+.|+|||||++.+....
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34689999999999999999998865
No 373
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=91.62 E-value=0.12 Score=48.65 Aligned_cols=27 Identities=26% Similarity=0.343 Sum_probs=24.0
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHHHh
Q 037851 172 PDVTITGVYGMGGLGKTTLVKEVARQV 198 (1053)
Q Consensus 172 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 198 (1053)
....+++|+|+.|.|||||++.++.-.
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 345799999999999999999999876
No 374
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=91.60 E-value=0.11 Score=53.32 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=23.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHh
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQV 198 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 198 (1053)
...+|+|.|+.|.|||||++.+....
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 44799999999999999999998865
No 375
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=91.57 E-value=0.11 Score=52.16 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 176 ITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 176 vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
.|+|.|+.|+||||+|+.+++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999988763
No 376
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=91.52 E-value=0.067 Score=53.62 Aligned_cols=24 Identities=29% Similarity=0.601 Sum_probs=22.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 176 ITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 176 vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
+|+|.|..|+||||+|+.+.....
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 789999999999999999998875
No 377
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=91.48 E-value=0.13 Score=51.38 Aligned_cols=28 Identities=25% Similarity=0.273 Sum_probs=24.6
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 172 PDVTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 172 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
....+|.|.|+.|+||||+|+.+.....
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3457999999999999999999998765
No 378
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=91.47 E-value=0.11 Score=52.06 Aligned_cols=27 Identities=22% Similarity=0.304 Sum_probs=23.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
...+++|+|+.|+|||||++.+.....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 457999999999999999999988754
No 379
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.42 E-value=0.2 Score=47.96 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=23.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
.++++|+|..|+|||||++.+.....
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 57899999999999999999998765
No 380
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=91.36 E-value=0.25 Score=53.85 Aligned_cols=39 Identities=23% Similarity=0.413 Sum_probs=30.1
Q ss_pred HHHHHHHhc--CCCeeEEEEEcCCCCcHHHHHHHHHHHhhh
Q 037851 162 LKSLQNALL--DPDVTITGVYGMGGLGKTTLVKEVARQVKK 200 (1053)
Q Consensus 162 ~~~l~~~l~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 200 (1053)
..++++.+. .++..+|+|+|.+|+|||||+..+......
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~ 105 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIE 105 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 344444443 456789999999999999999999887653
No 381
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=91.35 E-value=0.12 Score=50.88 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=22.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhh
Q 037851 176 ITGVYGMGGLGKTTLVKEVARQVKK 200 (1053)
Q Consensus 176 vi~I~G~~GiGKTtLa~~v~~~~~~ 200 (1053)
+|+|.|+.|+||||+|+.+.+....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999998753
No 382
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=91.28 E-value=0.1 Score=50.83 Aligned_cols=81 Identities=17% Similarity=0.228 Sum_probs=48.6
Q ss_pred cCCCceeEEeecCc-ccc-----CCCcccccCccCcEEEcCCcccCCc------cccCCCCCCcEEEccCCCCc-----c
Q 037851 525 IGTPKLKVLDFTRM-RLL-----SLPSSIHLLTDLRTLCLDGCELEDI------RVIGELKDLEILSLQGSKIE-----Q 587 (1053)
Q Consensus 525 ~~~~~Lr~L~l~~~-~~~-----~lp~~i~~l~~Lr~L~L~~~~~~~~------~~i~~l~~L~~L~l~~~~l~-----~ 587 (1053)
.+-+.|+.|+|+++ .+. .+-..+..-..|+.|+|++|.+.+. ..+..-..|++|+|++|.|. .
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 44567778888774 553 2344555566777777777776641 23334466777777777665 2
Q ss_pred cchhhhccCCCCeeeccC
Q 037851 588 LPREIGQLTQLKLLDLSN 605 (1053)
Q Consensus 588 lp~~i~~L~~L~~L~l~~ 605 (1053)
+-..+..-+.|++|+|++
T Consensus 118 la~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHHTTTTCCCSEEECCC
T ss_pred HHHHHhhCCceeEEECCC
Confidence 333344445577777664
No 383
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=91.28 E-value=0.14 Score=49.56 Aligned_cols=27 Identities=22% Similarity=0.233 Sum_probs=23.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhh
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVKK 200 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~~ 200 (1053)
..+|+|.|+.|+||||+++.+......
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 468999999999999999999987653
No 384
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=91.21 E-value=0.12 Score=51.94 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 037851 176 ITGVYGMGGLGKTTLVKEVARQV 198 (1053)
Q Consensus 176 vi~I~G~~GiGKTtLa~~v~~~~ 198 (1053)
.|+|.|+.|+||||+|+.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
No 385
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=91.20 E-value=0.11 Score=53.33 Aligned_cols=26 Identities=38% Similarity=0.336 Sum_probs=23.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
..+|+|+|+.|.||||+++.++....
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 36899999999999999999998764
No 386
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=91.17 E-value=0.13 Score=54.94 Aligned_cols=25 Identities=32% Similarity=0.372 Sum_probs=22.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 175 TITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 175 ~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
.+|+|.|+.|+||||||+.++....
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999998754
No 387
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=91.12 E-value=0.35 Score=53.22 Aligned_cols=99 Identities=18% Similarity=0.178 Sum_probs=59.8
Q ss_pred HHHHhc-CCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCC----eEEEEEEcCCc-CHHHHHHHHHHHhCC-------
Q 037851 165 LQNALL-DPDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFD----EVVFAEVSDTP-DIKKVQGELADQLGM------- 231 (1053)
Q Consensus 165 l~~~l~-~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~----~~~wv~~s~~~-~~~~~~~~i~~~l~~------- 231 (1053)
.++.+. =.+..-++|.|..|+|||+|+.++++.... +-+ .++++-+.+.. ...++.+++...=..
T Consensus 141 aID~l~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~~~--~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~ 218 (465)
T 3vr4_D 141 AIDHLNTLVRGQKLPVFSGSGLPHKELAAQIARQATV--LDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFM 218 (465)
T ss_dssp HHHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHCBC--SSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEE
T ss_pred EEecccccccCCEEEEeCCCCcChHHHHHHHHHHHHh--ccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEE
Confidence 345544 123345789999999999999999987653 123 56777777654 466666665543101
Q ss_pred CCCCCCChh-----HHHHHHHHHHh--cCCcEEEEEcCCCC
Q 037851 232 QFDEESDVP-----GRARKLYARLQ--KENKILIILDNIWE 265 (1053)
Q Consensus 232 ~~~~~~~~~-----~~~~~l~~~l~--~~~~~LlvlDdv~~ 265 (1053)
...+++... ...-.+-+++. .++.+||++||+-.
T Consensus 219 atsd~p~~~r~~a~~~a~tiAEyfrd~~G~~VLl~~DslTr 259 (465)
T 3vr4_D 219 NLANDPAIERIATPRMALTAAEYLAYEKGMHVLVIMTDMTN 259 (465)
T ss_dssp EETTSCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEECHHH
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 111121111 11234556665 38999999999843
No 388
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=91.11 E-value=0.15 Score=53.94 Aligned_cols=28 Identities=29% Similarity=0.451 Sum_probs=24.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhh
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKK 200 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 200 (1053)
...+++|+|+.|+||||+++.++...+.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3479999999999999999999988764
No 389
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=91.11 E-value=0.12 Score=50.48 Aligned_cols=25 Identities=32% Similarity=0.429 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 175 TITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 175 ~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
.+++|+|+.|+|||||++.++....
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 3689999999999999999998765
No 390
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=91.05 E-value=2.5 Score=45.83 Aligned_cols=25 Identities=24% Similarity=0.449 Sum_probs=21.9
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHH
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQ 197 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~ 197 (1053)
+...|+|+|.+|+|||||...+...
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~ 190 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTA 190 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999998764
No 391
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=90.97 E-value=0.13 Score=50.96 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=22.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHh
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQV 198 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~ 198 (1053)
..+|+|.|+.|+||||+|+.+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999998865
No 392
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=90.92 E-value=0.13 Score=57.05 Aligned_cols=46 Identities=17% Similarity=0.235 Sum_probs=34.5
Q ss_pred cccchHHHHHHHHHHhcC--------------CCeeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 154 AFESRMSTLKSLQNALLD--------------PDVTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 154 ~~~gR~~~~~~l~~~l~~--------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
.++|.++.++.+..++.. ...+-|.++|++|+||||+|+.++....
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~ 75 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcC
Confidence 467777777777555421 1245688999999999999999998865
No 393
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=90.91 E-value=0.14 Score=51.54 Aligned_cols=26 Identities=27% Similarity=0.473 Sum_probs=23.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
..+|.|.|++|.||||+|+.++....
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999998764
No 394
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=90.74 E-value=0.17 Score=52.48 Aligned_cols=27 Identities=37% Similarity=0.454 Sum_probs=24.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
...++.+.|.||+||||++..++....
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 357889999999999999999998776
No 395
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=90.68 E-value=0.16 Score=50.35 Aligned_cols=24 Identities=33% Similarity=0.371 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 176 ITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 176 vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
+|.|.|++|+||||.|+.+++++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 578999999999999999998865
No 396
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=90.60 E-value=0.15 Score=54.04 Aligned_cols=25 Identities=24% Similarity=0.234 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 175 TITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 175 ~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
++|.|+|+.|+||||||+.++....
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5899999999999999999998753
No 397
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=90.60 E-value=0.16 Score=50.59 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=22.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 176 ITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 176 vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
+|+|.|+.|+||||+|+.++....
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 899999999999999999988764
No 398
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=90.54 E-value=0.17 Score=50.89 Aligned_cols=23 Identities=30% Similarity=0.325 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHH
Q 037851 174 VTITGVYGMGGLGKTTLVKEVAR 196 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~ 196 (1053)
..+|+|.|+.|+||||+|+.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999976
No 399
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=90.50 E-value=0.15 Score=53.54 Aligned_cols=24 Identities=21% Similarity=0.565 Sum_probs=21.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHH
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVAR 196 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~ 196 (1053)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999983
No 400
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=90.43 E-value=0.15 Score=53.41 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=22.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHh
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQV 198 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~ 198 (1053)
.++|.|+|+.|+||||||..++...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3689999999999999999998764
No 401
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=90.42 E-value=0.2 Score=53.45 Aligned_cols=38 Identities=26% Similarity=0.304 Sum_probs=29.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEE
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEV 212 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 212 (1053)
...+|+|+|.+|+||||++..++......+ ..+.++..
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g--~kVllid~ 141 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELG--YKVLIAAA 141 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTT--CCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEeC
Confidence 457999999999999999999998876432 23455544
No 402
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=90.41 E-value=0.16 Score=51.00 Aligned_cols=25 Identities=20% Similarity=0.173 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 175 TITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 175 ~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
..|.|.|+.|+||||+|+.+++...
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999998764
No 403
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=90.36 E-value=0.6 Score=61.33 Aligned_cols=85 Identities=21% Similarity=0.266 Sum_probs=56.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhCCCCCC-----CCChhHHHHHHHH
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLGMQFDE-----ESDVPGRARKLYA 248 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~~ 248 (1053)
.+++.|+|.+|+||||||.+++......+ ..++|++.....+.. .++.++.+.+. ....++....+..
T Consensus 383 G~lilI~G~pGsGKTtLaLqia~~~a~~G--~~vlyis~E~s~~~~-----~a~~lGvd~~~L~I~~~~~~e~il~~~~~ 455 (2050)
T 3cmu_A 383 GRIVEIYGPESSGKTTLTLQVIAAAQREG--KTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDA 455 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHTTT--CCEEEECTTSCCCHH-----HHHHTTCCTTTCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHhcC--CeEEEEEcCCCHHHH-----HHHHcCCCHHHeEEeCCCCHHHHHHHHHH
Confidence 46999999999999999999998876332 368899888777643 25666654321 2233233333333
Q ss_pred HHhcCCcEEEEEcCCCC
Q 037851 249 RLQKENKILIILDNIWE 265 (1053)
Q Consensus 249 ~l~~~~~~LlvlDdv~~ 265 (1053)
.....+.-+||+|.+..
T Consensus 456 lv~~~~~~lIVIDSL~a 472 (2050)
T 3cmu_A 456 LARSGAVDVIVVDSVAA 472 (2050)
T ss_dssp HHHHTCCSEEEESCGGG
T ss_pred HHHhcCCcEEEECCHHH
Confidence 23345667999999853
No 404
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=90.35 E-value=0.17 Score=51.09 Aligned_cols=24 Identities=25% Similarity=0.238 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 176 ITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 176 vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
.|.|.|+.|+||||+|+.+++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999998763
No 405
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=90.30 E-value=0.19 Score=51.15 Aligned_cols=26 Identities=23% Similarity=0.215 Sum_probs=23.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
...|.|.|+.|+||||+|+.+++...
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999998864
No 406
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=90.28 E-value=0.32 Score=54.51 Aligned_cols=42 Identities=29% Similarity=0.406 Sum_probs=30.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcC
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPD 217 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 217 (1053)
...+++|+|..|+|||||++.++...+.. .+.+++.....+.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~---~G~V~l~g~D~~r 333 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQ---GKSVMLAAGDTFR 333 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEECCCTTC
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhc---CCeEEEecCcccc
Confidence 35799999999999999999999877643 2344444334333
No 407
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=90.26 E-value=0.34 Score=51.98 Aligned_cols=49 Identities=24% Similarity=0.273 Sum_probs=36.3
Q ss_pred cCCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHH
Q 037851 170 LDPDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKK 220 (1053)
Q Consensus 170 ~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~ 220 (1053)
.+...+++.+.|.||+||||+|..++......+ ..++-|+.....++..
T Consensus 12 ~~~~~~i~~~sgkGGvGKTt~a~~lA~~la~~g--~~vllid~D~~~~l~~ 60 (334)
T 3iqw_A 12 DQRSLRWIFVGGKGGVGKTTTSCSLAIQLAKVR--RSVLLLSTDPAHNLSD 60 (334)
T ss_dssp HCTTCCEEEEECSTTSSHHHHHHHHHHHHTTSS--SCEEEEECCSSCHHHH
T ss_pred cCCCeEEEEEeCCCCccHHHHHHHHHHHHHhCC--CcEEEEECCCCCChhH
Confidence 345568889999999999999999999887432 3566677765544433
No 408
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=90.25 E-value=0.17 Score=50.68 Aligned_cols=23 Identities=17% Similarity=0.069 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 037851 176 ITGVYGMGGLGKTTLVKEVARQV 198 (1053)
Q Consensus 176 vi~I~G~~GiGKTtLa~~v~~~~ 198 (1053)
.|.|.|+.|+||||+|+.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999876
No 409
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=90.23 E-value=0.68 Score=47.33 Aligned_cols=49 Identities=20% Similarity=0.248 Sum_probs=32.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHH
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGEL 225 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 225 (1053)
..++.|.|.+|+||||+|.+++.....+ .-..++|++... +...+...+
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~-~~~~v~~~s~E~--~~~~~~~~~ 78 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEE-YGEPGVFVTLEE--RARDLRREM 78 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHH-HCCCEEEEESSS--CHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHh-cCCCceeecccC--CHHHHHHHH
Confidence 3689999999999999999976553221 123466666543 444554443
No 410
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=90.22 E-value=0.2 Score=55.48 Aligned_cols=100 Identities=18% Similarity=0.200 Sum_probs=60.8
Q ss_pred HHHHhc-CCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCC--CCeEEEEEEcCCc-CHHHHHHHHHHHhCC-------CC
Q 037851 165 LQNALL-DPDVTITGVYGMGGLGKTTLVKEVARQVKKDKH--FDEVVFAEVSDTP-DIKKVQGELADQLGM-------QF 233 (1053)
Q Consensus 165 l~~~l~-~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~--f~~~~wv~~s~~~-~~~~~~~~i~~~l~~-------~~ 233 (1053)
.++.+. -.+..-++|.|.+|+|||+|+.++++.....+. =+.++++-+.+.. ...++..++...=.. ..
T Consensus 142 ~ID~l~pigrGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~t 221 (469)
T 2c61_A 142 TIDGTNTLVRGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNL 221 (469)
T ss_dssp HHHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEE
T ss_pred eeeeeeccccCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEEC
Confidence 455554 223356788999999999999999998764221 1457777777664 466777666654111 11
Q ss_pred CCCCCh-----hHHHHHHHHHHh--cCCcEEEEEcCCC
Q 037851 234 DEESDV-----PGRARKLYARLQ--KENKILIILDNIW 264 (1053)
Q Consensus 234 ~~~~~~-----~~~~~~l~~~l~--~~~~~LlvlDdv~ 264 (1053)
.+++.. ....-.+-+++. +++.+|+++||+.
T Consensus 222 sd~p~~~r~~~~~~a~tiAEyfrdd~G~dVLl~~Dslt 259 (469)
T 2c61_A 222 ADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDIT 259 (469)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeCHH
Confidence 111111 011233445554 4899999999973
No 411
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=90.20 E-value=0.61 Score=60.44 Aligned_cols=85 Identities=21% Similarity=0.269 Sum_probs=55.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhCCCCC-----CCCChhHHHHHHHH
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLGMQFD-----EESDVPGRARKLYA 248 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 248 (1053)
..++.|.|.+|+||||||.+++......+ ..++|++.....+.. .++.++.+.+ .....++....+.+
T Consensus 732 G~lVlI~G~PG~GKTtLal~lA~~aa~~g--~~VlyiS~Ees~~ql-----~A~~lGvd~~~L~i~~~~~leei~~~l~~ 804 (1706)
T 3cmw_A 732 GRIVEIYGPESSGKTTLTLQVIAAAQREG--KTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDA 804 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCcHHHHHHHHHHHHHcC--CCeEEEeccchHHHH-----HHHHcCCChhheEEecCCcHHHHHHHHHH
Confidence 46999999999999999999998876432 357888777665532 2566664321 12233333333333
Q ss_pred HHhcCCcEEEEEcCCCC
Q 037851 249 RLQKENKILIILDNIWE 265 (1053)
Q Consensus 249 ~l~~~~~~LlvlDdv~~ 265 (1053)
.....+.-+||+|.+..
T Consensus 805 lv~~~~~~lVVIDsLq~ 821 (1706)
T 3cmw_A 805 LARSGAVDVIVVDSVAA 821 (1706)
T ss_dssp HHHHTCCSEEEESCSTT
T ss_pred HHHccCCCEEEEechhh
Confidence 33345667999999854
No 412
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=90.20 E-value=1 Score=51.65 Aligned_cols=52 Identities=17% Similarity=0.144 Sum_probs=38.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHH
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQ 228 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 228 (1053)
..++.|.|.+|+||||+|.+++.....+. =..++|++... +..++...++..
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~~-g~~vl~~s~E~--s~~~l~~r~~~~ 293 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTAM-GKKVGLAMLEE--SVEETAEDLIGL 293 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTTS-CCCEEEEESSS--CHHHHHHHHHHH
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHhc-CCcEEEEeccC--CHHHHHHHHHHH
Confidence 46899999999999999999998876431 13577776644 456777666544
No 413
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=90.17 E-value=0.16 Score=51.64 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 037851 175 TITGVYGMGGLGKTTLVKEVARQV 198 (1053)
Q Consensus 175 ~vi~I~G~~GiGKTtLa~~v~~~~ 198 (1053)
.+++|+|+.|.|||||.+.++.-.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 799999999999999999987643
No 414
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=90.17 E-value=0.17 Score=59.71 Aligned_cols=48 Identities=17% Similarity=0.162 Sum_probs=39.3
Q ss_pred CCcccccchHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 150 KGYEAFESRMSTLKSLQNALLDPDVTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 150 ~~~~~~~gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
.....++|.+..++.+...+..+ ..+.|+|+.|+||||||+.++....
T Consensus 38 ~~l~~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 38 KLIDQVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp SHHHHCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred cccceEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccCC
Confidence 34466889988888887777654 5889999999999999999998754
No 415
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=90.16 E-value=0.3 Score=51.93 Aligned_cols=28 Identities=18% Similarity=0.183 Sum_probs=24.4
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 172 PDVTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 172 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
....+|+|+|..|.|||||++.+.....
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3457999999999999999999988654
No 416
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=90.13 E-value=0.13 Score=54.56 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=22.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHh
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQV 198 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 198 (1053)
..++|.|+|+.|+||||||..+++..
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 34689999999999999999998754
No 417
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=90.08 E-value=0.2 Score=54.10 Aligned_cols=28 Identities=29% Similarity=0.451 Sum_probs=24.9
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhh
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKK 200 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 200 (1053)
...+++|+|..|+||||+++.++.....
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~ 183 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKN 183 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccc
Confidence 3579999999999999999999988764
No 418
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=90.00 E-value=0.39 Score=51.80 Aligned_cols=49 Identities=22% Similarity=0.333 Sum_probs=35.5
Q ss_pred hcCCCeeEEEEEcCCCCcHHHHHHHHHHHhh--hcCCCCeEEEEEEcCCcCHH
Q 037851 169 LLDPDVTITGVYGMGGLGKTTLVKEVARQVK--KDKHFDEVVFAEVSDTPDIK 219 (1053)
Q Consensus 169 l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~--~~~~f~~~~wv~~s~~~~~~ 219 (1053)
+.+...+++.+.|.||+||||+|..++.... ..+ ..+.-|+.....++.
T Consensus 13 l~~~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g--~~vllid~D~~~~l~ 63 (348)
T 3io3_A 13 VQHDSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPN--EQFLLISTDPAHNLS 63 (348)
T ss_dssp HTCTTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTT--SCEEEEECCSSCHHH
T ss_pred hcCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCC--CeEEEEECCCCCChH
Confidence 3355668999999999999999999998876 332 245667766544433
No 419
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=90.00 E-value=0.49 Score=52.10 Aligned_cols=100 Identities=18% Similarity=0.234 Sum_probs=59.1
Q ss_pred HHHHhc-CCCeeEEEEEcCCCCcHHHHHHHHHHHhhhc--------CCCC-eEEEEEEcCCc-CHHHHHHHHHHH--hC-
Q 037851 165 LQNALL-DPDVTITGVYGMGGLGKTTLVKEVARQVKKD--------KHFD-EVVFAEVSDTP-DIKKVQGELADQ--LG- 230 (1053)
Q Consensus 165 l~~~l~-~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~--------~~f~-~~~wv~~s~~~-~~~~~~~~i~~~--l~- 230 (1053)
.++.+. =.+..-++|.|.+|+|||+|+.++++..... ++-+ .++++-+.+.. ...++..++.+. +.
T Consensus 137 aID~l~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~r 216 (464)
T 3gqb_B 137 TIDVMNTLVRGQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSR 216 (464)
T ss_dssp HHHTTSCCBTTCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGG
T ss_pred eeecccccccCCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccc
Confidence 345444 2233567899999999999999998876531 1112 56777777654 456666665442 10
Q ss_pred ----CCCCCCCChh-----HHHHHHHHHHh--cCCcEEEEEcCCC
Q 037851 231 ----MQFDEESDVP-----GRARKLYARLQ--KENKILIILDNIW 264 (1053)
Q Consensus 231 ----~~~~~~~~~~-----~~~~~l~~~l~--~~~~~LlvlDdv~ 264 (1053)
....+++... ...-.+-+++. .++.+||++||+-
T Consensus 217 tvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlT 261 (464)
T 3gqb_B 217 SVLFLNKADDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDMT 261 (464)
T ss_dssp EEEEEEETTSCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHH
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 0111222211 11234556665 3799999999984
No 420
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=89.99 E-value=0.21 Score=52.19 Aligned_cols=27 Identities=22% Similarity=0.156 Sum_probs=23.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
..++|.|+|+.|+||||||..+++...
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCC
Confidence 357899999999999999999998753
No 421
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=89.95 E-value=1.2 Score=61.40 Aligned_cols=89 Identities=19% Similarity=0.167 Sum_probs=53.1
Q ss_pred HHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhCCCCCCC-CChhHH
Q 037851 164 SLQNALLDPDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLGMQFDEE-SDVPGR 242 (1053)
Q Consensus 164 ~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~ 242 (1053)
.+++.+...+ +-|.++|+.|+|||++++.+..... .+ ..+.++++...+...++..+-..+....... .....
T Consensus 1295 ~ll~~ll~~~-~pvLL~GptGtGKT~li~~~L~~l~---~~-~~~~infS~~Tta~~l~~~~e~~~e~~~~~~~G~~~~- 1368 (3245)
T 3vkg_A 1295 DVLHAWLSEH-RPLILCGPPGSGKTMTLTSTLRAFP---DF-EVVSLNFSSATTPELLLKTFDHHCEYKRTPSGETVLR- 1368 (3245)
T ss_dssp HHHHHHHHTT-CCCEEESSTTSSHHHHHHHHGGGCT---TE-EEEEECCCTTCCHHHHHHHHHHHEEEEECTTSCEEEE-
T ss_pred HHHHHHHHCC-CcEEEECCCCCCHHHHHHHHHHhCC---CC-ceEEEEeeCCCCHHHHHHHHhhcceEEeccCCCcccC-
Confidence 3444443333 4567999999999998877664332 12 3467888888888888877765543211100 00000
Q ss_pred HHHHHHHHhcCCcEEEEEcCCC
Q 037851 243 ARKLYARLQKENKILIILDNIW 264 (1053)
Q Consensus 243 ~~~l~~~l~~~~~~LlvlDdv~ 264 (1053)
-...+|+.++++||+.
T Consensus 1369 ------p~~~Gk~~VlFiDDiN 1384 (3245)
T 3vkg_A 1369 ------PTQLGKWLVVFCDEIN 1384 (3245)
T ss_dssp ------ESSTTCEEEEEETTTT
T ss_pred ------CCcCCceEEEEecccC
Confidence 0002788899999985
No 422
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=89.90 E-value=0.39 Score=49.97 Aligned_cols=39 Identities=18% Similarity=0.419 Sum_probs=30.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCC
Q 037851 175 TITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDT 215 (1053)
Q Consensus 175 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~ 215 (1053)
++|+|.|.||+||||+|..++......+ ..++.|+....
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G--~~VlliD~D~q 40 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMG--KTIMVVGCDPK 40 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTT--CCEEEEEECTT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCC--CcEEEEcCCCC
Confidence 5788899999999999999999887432 24666776543
No 423
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=89.86 E-value=0.58 Score=52.61 Aligned_cols=58 Identities=16% Similarity=0.282 Sum_probs=41.4
Q ss_pred HHHHHhc-CCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcC-HHHHHHHH
Q 037851 164 SLQNALL-DPDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPD-IKKVQGEL 225 (1053)
Q Consensus 164 ~l~~~l~-~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~-~~~~~~~i 225 (1053)
++++.+. -.+...++|.|..|+|||+|+..+++.. +-+.++++-+.+... ..+++.++
T Consensus 216 rvID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~----~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 216 RVIDTFFPQAKGGTAAIPGPAGSGKTVTQHQLAKWS----DAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp HHHHHHSCEETTCEEEECSCCSHHHHHHHHHHHHHS----SCSEEEEEECCSSSSHHHHHHHHT
T ss_pred chhhccCCcccCCeEEeecCCCCCHHHHHHHHHhcc----CCCEEEEEEecccHHHHHHHHHHH
Confidence 4456554 2234678999999999999999987753 346788888887765 45555554
No 424
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=89.86 E-value=0.12 Score=52.52 Aligned_cols=25 Identities=28% Similarity=0.302 Sum_probs=16.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHH-HHh
Q 037851 174 VTITGVYGMGGLGKTTLVKEVA-RQV 198 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~-~~~ 198 (1053)
..+++|+|+.|+|||||++.+. ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3689999999999999999998 654
No 425
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=89.83 E-value=0.16 Score=52.16 Aligned_cols=24 Identities=29% Similarity=0.260 Sum_probs=21.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHH
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQ 197 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~ 197 (1053)
..+++|+|+.|+|||||++.++..
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~~ 53 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHH
Confidence 469999999999999999999843
No 426
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=89.70 E-value=1.5 Score=49.22 Aligned_cols=52 Identities=10% Similarity=0.031 Sum_probs=37.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHH
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQ 228 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 228 (1053)
..++.|.|.+|+||||+|..++....... =..++|++.. -+..++...++..
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~~-g~~vl~~slE--~~~~~l~~R~~~~ 251 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALKE-GVGVGIYSLE--MPAAQLTLRMMCS 251 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTT-CCCEEEEESS--SCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhC-CCeEEEEECC--CCHHHHHHHHHHH
Confidence 36899999999999999999998876422 1357777664 4566677666544
No 427
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=89.67 E-value=0.12 Score=54.42 Aligned_cols=27 Identities=22% Similarity=0.352 Sum_probs=20.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
+..+|+|.|..|+||||+|+.+.+...
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456899999999999999999988654
No 428
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=89.64 E-value=0.26 Score=48.90 Aligned_cols=38 Identities=18% Similarity=0.122 Sum_probs=28.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCC
Q 037851 176 ITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDT 215 (1053)
Q Consensus 176 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~ 215 (1053)
.|.+.|.||+||||+|..++.....++ ++ +.++.+...
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G-~~-V~v~d~D~q 45 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQG-VR-VMAGVVETH 45 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTT-CC-EEEEECCCT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCC-CC-EEEEEeCCC
Confidence 478899999999999999998876443 33 444555443
No 429
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=89.62 E-value=0.16 Score=51.55 Aligned_cols=25 Identities=20% Similarity=0.313 Sum_probs=21.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHh
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQV 198 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~ 198 (1053)
..+++|+|+.|.|||||++.++.-.
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4699999999999999999987543
No 430
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=89.60 E-value=0.56 Score=47.33 Aligned_cols=36 Identities=19% Similarity=0.387 Sum_probs=28.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEE
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFA 210 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv 210 (1053)
..+|.|.|+.|+||||+++.+++.... ..+..+...
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~-~~~~~~~~~ 62 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQ-NGIDHITRT 62 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHH-TTCCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh-cCCCeeeee
Confidence 468999999999999999999998874 345533333
No 431
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=89.54 E-value=0.15 Score=51.30 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHH
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQ 197 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~ 197 (1053)
..+++|+|+.|.|||||++.++.-
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 368999999999999999998754
No 432
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=89.37 E-value=0.39 Score=48.48 Aligned_cols=28 Identities=32% Similarity=0.381 Sum_probs=25.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhh
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKK 200 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 200 (1053)
...+|.|.|+.|+||||+++.+.+....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4478999999999999999999998864
No 433
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=89.35 E-value=0.15 Score=50.54 Aligned_cols=24 Identities=42% Similarity=0.272 Sum_probs=21.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHH
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQ 197 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~ 197 (1053)
..+++|+|+.|.|||||++.++.-
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 368999999999999999999876
No 434
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=89.33 E-value=0.51 Score=46.88 Aligned_cols=44 Identities=20% Similarity=0.187 Sum_probs=32.6
Q ss_pred EEEEE-cCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHH
Q 037851 176 ITGVY-GMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQ 222 (1053)
Q Consensus 176 vi~I~-G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 222 (1053)
+|+|+ +.||+||||+|..++......+ .++.++.....+....+
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g---~VlliD~D~q~~~~~~~ 46 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG---ETLLIDGDPNRSATGWG 46 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS---CEEEEEECTTCHHHHHH
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC---CEEEEECCCCCCHHHHh
Confidence 55664 7899999999999999987543 67778887665544433
No 435
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=89.26 E-value=0.73 Score=51.50 Aligned_cols=102 Identities=14% Similarity=0.181 Sum_probs=58.8
Q ss_pred HHHHHhc-CCCeeEEEEEcCCCCcHHHHH-HHHHHHhhh----cCCCC-eEEEEEEcCCc-CHHHHHHHHHHHhCC----
Q 037851 164 SLQNALL-DPDVTITGVYGMGGLGKTTLV-KEVARQVKK----DKHFD-EVVFAEVSDTP-DIKKVQGELADQLGM---- 231 (1053)
Q Consensus 164 ~l~~~l~-~~~~~vi~I~G~~GiGKTtLa-~~v~~~~~~----~~~f~-~~~wv~~s~~~-~~~~~~~~i~~~l~~---- 231 (1053)
+.++.+. =.+..-++|+|..|+|||+|| ..+.+.... .++-+ .++|+-+.+.. .+.++.+++...=..
T Consensus 151 raID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tv 230 (510)
T 2ck3_A 151 KAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTI 230 (510)
T ss_dssp HHHHHHSCCBTTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEE
T ss_pred eeeccccccccCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccce
Confidence 3445554 233457899999999999995 566666542 12234 47788888765 456666666542111
Q ss_pred ---CCCCCCChhH-----HHHHHHHHHh-cCCcEEEEEcCCCC
Q 037851 232 ---QFDEESDVPG-----RARKLYARLQ-KENKILIILDNIWE 265 (1053)
Q Consensus 232 ---~~~~~~~~~~-----~~~~l~~~l~-~~~~~LlvlDdv~~ 265 (1053)
...+++.... ..-.+-+++. +++.+||++||+..
T Consensus 231 vV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr 273 (510)
T 2ck3_A 231 VVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSK 273 (510)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHHH
Confidence 1111111101 1223344444 47999999999843
No 436
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=89.26 E-value=1.1 Score=50.64 Aligned_cols=50 Identities=14% Similarity=0.203 Sum_probs=35.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHH
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELA 226 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 226 (1053)
..++.|.|.+|+||||+|..++........ ..++|++... +...+...++
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~~g-~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATKTN-ENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHHSS-CCEEEEESSS--CHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhCC-CcEEEEECCC--CHHHHHHHHH
Confidence 369999999999999999999988764221 2577776543 4456655554
No 437
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=89.19 E-value=0.66 Score=60.13 Aligned_cols=84 Identities=23% Similarity=0.292 Sum_probs=61.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhCCCCCC----CCCh-hHHHHHHHH
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLGMQFDE----ESDV-PGRARKLYA 248 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~----~~~~-~~~~~~l~~ 248 (1053)
.++|-|+|+.|.||||||.++....... =..++|+++.+..+.. .++.+|.+.+. .++. ++.+..+..
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a~~~~~--g~~~~~i~~e~~~~~~-----~~~~~Gv~~~~l~~~~p~~~e~~l~~~~~ 1503 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDA 1503 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhc--CCeEEEEecCCCCCHH-----HHHHcCCCHHHeEEeCCCcHHHHHHHHHH
Confidence 4899999999999999999998765532 3568899988887754 38888887653 2232 334444455
Q ss_pred HHhcCCcEEEEEcCCC
Q 037851 249 RLQKENKILIILDNIW 264 (1053)
Q Consensus 249 ~l~~~~~~LlvlDdv~ 264 (1053)
.++.+..-+||+|-|-
T Consensus 1504 ~~~s~~~~~vvvDsv~ 1519 (1706)
T 3cmw_A 1504 LARSGAVDVIVVDSVA 1519 (1706)
T ss_dssp HHHHTCCSEEEESCST
T ss_pred HHHcCCCCEEEEccHH
Confidence 5556777899999984
No 438
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=89.11 E-value=0.82 Score=51.61 Aligned_cols=58 Identities=21% Similarity=0.306 Sum_probs=41.0
Q ss_pred HHHHHhc-CCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCc-CHHHHHHHH
Q 037851 164 SLQNALL-DPDVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTP-DIKKVQGEL 225 (1053)
Q Consensus 164 ~l~~~l~-~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i 225 (1053)
++++.|. -.+...++|.|..|+|||+|+.++++... -+.++|+-+.+.. ...+++.++
T Consensus 221 rvID~l~PigrGqr~~Ifgg~g~GKT~L~~~ia~~~~----~~v~V~~~iGER~~Ev~e~~~~~ 280 (600)
T 3vr4_A 221 RVIDTFFPVTKGGAAAVPGPFGAGKTVVQHQIAKWSD----VDLVVYVGCGERGNEMTDVVNEF 280 (600)
T ss_dssp HHHHHHSCCBTTCEEEEECCTTSCHHHHHHHHHHHSS----CSEEEEEEEEECHHHHHHHHHHT
T ss_pred hhhhccCCccCCCEEeeecCCCccHHHHHHHHHhccC----CCEEEEEEecccHHHHHHHHHHH
Confidence 4456655 23446889999999999999999987632 4678888888763 344554443
No 439
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=89.10 E-value=0.34 Score=54.88 Aligned_cols=46 Identities=9% Similarity=-0.080 Sum_probs=33.9
Q ss_pred ccchHHHHHHHHHHhc--CCCeeEEEEEcCCCCcHHHHHHHHHHHhhh
Q 037851 155 FESRMSTLKSLQNALL--DPDVTITGVYGMGGLGKTTLVKEVARQVKK 200 (1053)
Q Consensus 155 ~~gR~~~~~~l~~~l~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 200 (1053)
...|.+..+.+.+... ..+..+|.+.|+.|.||||+|+.+++....
T Consensus 374 ~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 374 WFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp TTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 3455555555555542 234578999999999999999999999863
No 440
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=89.08 E-value=0.49 Score=47.25 Aligned_cols=29 Identities=28% Similarity=0.375 Sum_probs=25.7
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHHHhhh
Q 037851 172 PDVTITGVYGMGGLGKTTLVKEVARQVKK 200 (1053)
Q Consensus 172 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 200 (1053)
....+|.|.|..|+||||+++.+.+....
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 45679999999999999999999998864
No 441
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=89.07 E-value=0.19 Score=51.15 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=22.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHh
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQV 198 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~ 198 (1053)
..+++|+|+.|.|||||++.++.-.
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4699999999999999999997654
No 442
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=89.03 E-value=0.66 Score=46.07 Aligned_cols=52 Identities=19% Similarity=0.236 Sum_probs=33.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHH
Q 037851 175 TITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELAD 227 (1053)
Q Consensus 175 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 227 (1053)
..|.|.|..|+||||+++.+++..... .+..+.+..-.....+.+.+++++.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~-~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQL-GIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc-CCCcceeeeCCCCCHHHHHHHHHHh
Confidence 589999999999999999999988754 3433333322222223444444443
No 443
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=88.99 E-value=0.28 Score=51.74 Aligned_cols=40 Identities=20% Similarity=0.443 Sum_probs=30.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCC
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDT 215 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~ 215 (1053)
.++|+|.|.||+||||+|..++......+ ..++-|+....
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~G--~rVlliD~D~q 41 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEMG--KKVMIVGCDPK 41 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHTT--CCEEEEEECSS
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHCC--CeEEEEecCCC
Confidence 36888899999999999999999887433 24566776543
No 444
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=88.95 E-value=0.39 Score=50.28 Aligned_cols=26 Identities=31% Similarity=0.460 Sum_probs=23.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
..++.|+|.+|+||||||..++....
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 36999999999999999999987654
No 445
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=88.94 E-value=0.44 Score=48.94 Aligned_cols=41 Identities=24% Similarity=0.372 Sum_probs=31.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHH
Q 037851 177 TGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIK 219 (1053)
Q Consensus 177 i~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 219 (1053)
|+|.|.||+||||+|..++......+ ..++-|+.....+..
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g--~~VlliD~D~~~~l~ 43 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDY--DKIYAVDGDPDSCLG 43 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTC--SCEEEEEECTTSCHH
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCC--CeEEEEeCCCCcChH
Confidence 56699999999999999999987543 456777776655543
No 446
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=88.87 E-value=0.19 Score=51.92 Aligned_cols=26 Identities=19% Similarity=0.325 Sum_probs=22.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHh
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQV 198 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 198 (1053)
...+++|+|+.|.|||||++.++.-.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34699999999999999999987543
No 447
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=88.81 E-value=0.76 Score=45.65 Aligned_cols=32 Identities=19% Similarity=0.228 Sum_probs=26.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCe
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVKKDKHFDE 206 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~ 206 (1053)
..+|.|.|+.|+||||+++.+.+..... .+..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~-~~~v 37 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRER-GIEV 37 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTT-TCCE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHc-CCCc
Confidence 4689999999999999999999988743 3444
No 448
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=88.80 E-value=0.23 Score=48.53 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=21.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHh
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQV 198 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~ 198 (1053)
.-.|+|+|..|+|||||.+.+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4578999999999999999998753
No 449
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=88.79 E-value=0.22 Score=51.07 Aligned_cols=24 Identities=33% Similarity=0.426 Sum_probs=21.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHH
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQ 197 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~ 197 (1053)
..+++|+|+.|.|||||++.++.-
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999863
No 450
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=88.76 E-value=0.28 Score=49.91 Aligned_cols=27 Identities=22% Similarity=0.316 Sum_probs=23.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
...+|+|.|+.|.||||+++.++....
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 456899999999999999999988653
No 451
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=88.71 E-value=0.19 Score=52.21 Aligned_cols=25 Identities=28% Similarity=0.490 Sum_probs=21.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHh
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQV 198 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~ 198 (1053)
..+++|+|+.|.|||||++.++.-.
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC
Confidence 3699999999999999999987543
No 452
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=88.65 E-value=1.2 Score=48.87 Aligned_cols=105 Identities=15% Similarity=0.229 Sum_probs=67.0
Q ss_pred ccccCCCceeEEeecCccccCC-CcccccCccCcEEEcCCcccCC--ccccCCCCCCcEEEccCCCCcccch-hhhccCC
Q 037851 522 NIFIGTPKLKVLDFTRMRLLSL-PSSIHLLTDLRTLCLDGCELED--IRVIGELKDLEILSLQGSKIEQLPR-EIGQLTQ 597 (1053)
Q Consensus 522 ~~~~~~~~Lr~L~l~~~~~~~l-p~~i~~l~~Lr~L~L~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~lp~-~i~~L~~ 597 (1053)
..|.....|+.+.+..+ +..+ ...+..+..|+.+.+..+ +.. ...+.++.+|+.+.+.. .+..++. .+..+.+
T Consensus 211 ~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~ 287 (379)
T 4h09_A 211 YGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSN 287 (379)
T ss_dssp TTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTT
T ss_pred cccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceeccccccccccc
Confidence 33455666666666543 2223 234566777777777654 333 24566777788887754 3556654 4577788
Q ss_pred CCeeeccCcccccccCcchhcCCccCceeeccc
Q 037851 598 LKLLDLSNCSKLKVIAPNVLSNLSQLEELYMAN 630 (1053)
Q Consensus 598 L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~ 630 (1053)
|+.+.+.+ +.+..++...+.++++|+.+.+..
T Consensus 288 L~~i~l~~-~~i~~I~~~aF~~c~~L~~i~lp~ 319 (379)
T 4h09_A 288 LTKVVMDN-SAIETLEPRVFMDCVKLSSVTLPT 319 (379)
T ss_dssp CCEEEECC-TTCCEECTTTTTTCTTCCEEECCT
T ss_pred cccccccc-cccceehhhhhcCCCCCCEEEcCc
Confidence 88888876 456677777777888888887753
No 453
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=88.60 E-value=0.26 Score=52.38 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 037851 175 TITGVYGMGGLGKTTLVKEVARQ 197 (1053)
Q Consensus 175 ~vi~I~G~~GiGKTtLa~~v~~~ 197 (1053)
.+|.|.|++|+||||+|+.+.+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999874
No 454
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=88.59 E-value=0.14 Score=45.18 Aligned_cols=79 Identities=14% Similarity=0.111 Sum_probs=56.3
Q ss_pred HHHHhhhhhhhhhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCcchHHHHHHHHHHHHHHHHHhhhhh
Q 037851 10 LEVAKCLFPPIGRQLSYVRNYKANLENLKKETEKLTDASDSMQKKV-DDARRNGEEINKRVESWLISADKIVAEADTLTG 88 (1053)
Q Consensus 10 ~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~l~~i~~~l-~~a~~~~~~~~~~~~~wl~~~~~~~~~~ed~ld 88 (1053)
+.+.+++.+.+.+++..+.++.++++.++++++.|++.|.+....- +..+......-.+++.-..++.|+..+...-++
T Consensus 4 ~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~~~~ 83 (115)
T 3qfl_A 4 SNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLVQVD 83 (115)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455667788889999999999999999999999999998876431 111111123345677777888888766555444
No 455
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=88.59 E-value=0.24 Score=51.35 Aligned_cols=25 Identities=28% Similarity=0.430 Sum_probs=22.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHH
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQ 197 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~ 197 (1053)
...+++|+|+.|.|||||++.++.-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3469999999999999999999864
No 456
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=88.57 E-value=0.21 Score=51.58 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=22.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHh
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQV 198 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 198 (1053)
...+++|+|+.|.|||||++.++.-.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 34699999999999999999987543
No 457
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=88.55 E-value=0.26 Score=51.83 Aligned_cols=27 Identities=19% Similarity=0.281 Sum_probs=23.9
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHHHh
Q 037851 172 PDVTITGVYGMGGLGKTTLVKEVARQV 198 (1053)
Q Consensus 172 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 198 (1053)
+...+++|+|+.|.|||||++.+..-.
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 345799999999999999999998765
No 458
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=88.51 E-value=0.2 Score=51.84 Aligned_cols=25 Identities=24% Similarity=0.441 Sum_probs=22.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHh
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQV 198 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~ 198 (1053)
..+++|+|+.|.|||||++.++.-.
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4699999999999999999997644
No 459
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=88.50 E-value=0.21 Score=50.96 Aligned_cols=25 Identities=36% Similarity=0.456 Sum_probs=21.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHh
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQV 198 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~ 198 (1053)
..+++|+|+.|.|||||.+.++--.
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3689999999999999999987543
No 460
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=88.48 E-value=0.18 Score=50.30 Aligned_cols=25 Identities=32% Similarity=0.539 Sum_probs=21.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHh
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQV 198 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~ 198 (1053)
..+++|+|+.|.|||||++.++.-.
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3689999999999999999987543
No 461
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=88.40 E-value=0.28 Score=53.39 Aligned_cols=25 Identities=24% Similarity=0.474 Sum_probs=22.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 175 TITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 175 ~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
++|.|.|+.|+||||||..++....
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 5899999999999999999998764
No 462
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=88.37 E-value=0.21 Score=50.44 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=22.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHh
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQV 198 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~ 198 (1053)
..+++|+|+.|.|||||.+.++.-.
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3689999999999999999998654
No 463
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=88.37 E-value=0.21 Score=51.51 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=21.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHh
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQV 198 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~ 198 (1053)
..+++|+|+.|.|||||.+.++.-.
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3699999999999999999987543
No 464
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=88.33 E-value=0.23 Score=50.70 Aligned_cols=26 Identities=27% Similarity=0.309 Sum_probs=22.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHh
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQV 198 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 198 (1053)
...+++|+|+.|.|||||++.++.-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34799999999999999999997643
No 465
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=88.26 E-value=0.22 Score=51.00 Aligned_cols=25 Identities=36% Similarity=0.529 Sum_probs=21.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHh
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQV 198 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~ 198 (1053)
..+++|+|+.|.|||||++.++.-.
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3689999999999999999987643
No 466
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=88.18 E-value=0.75 Score=52.08 Aligned_cols=45 Identities=18% Similarity=0.254 Sum_probs=33.4
Q ss_pred chHHHHHHHHHHhcCCCeeEEEEEcCCCCcHHHHHHHHHHHhhhcC
Q 037851 157 SRMSTLKSLQNALLDPDVTITGVYGMGGLGKTTLVKEVARQVKKDK 202 (1053)
Q Consensus 157 gR~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~ 202 (1053)
+..+.++.+.+.+.+++ +.+.|.|.+|.||||++..+.......+
T Consensus 29 ~Q~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l~~~~ 73 (459)
T 3upu_A 29 GQKNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEALISTG 73 (459)
T ss_dssp HHHHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHHHhcC
Confidence 34445566666665443 4899999999999999999998876443
No 467
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=88.16 E-value=0.31 Score=45.83 Aligned_cols=23 Identities=17% Similarity=0.359 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 037851 175 TITGVYGMGGLGKTTLVKEVARQ 197 (1053)
Q Consensus 175 ~vi~I~G~~GiGKTtLa~~v~~~ 197 (1053)
+.|.|+|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999864
No 468
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=88.15 E-value=0.23 Score=51.04 Aligned_cols=26 Identities=31% Similarity=0.508 Sum_probs=22.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHh
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQV 198 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 198 (1053)
...+++|+|+.|.|||||.+.++.-.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34699999999999999999987543
No 469
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=88.13 E-value=0.78 Score=51.15 Aligned_cols=98 Identities=13% Similarity=0.144 Sum_probs=57.6
Q ss_pred HHHHHhc-CCCeeEEEEEcCCCCcHHHHH-HHHHHHhhhcCCCC-eEEEEEEcCCc-CHHHHHHHHHHHhCCC-------
Q 037851 164 SLQNALL-DPDVTITGVYGMGGLGKTTLV-KEVARQVKKDKHFD-EVVFAEVSDTP-DIKKVQGELADQLGMQ------- 232 (1053)
Q Consensus 164 ~l~~~l~-~~~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~f~-~~~wv~~s~~~-~~~~~~~~i~~~l~~~------- 232 (1053)
+.++.+. =.+..-++|+|..|+|||+|| ..+.+.. .-+ .++++-+.+.. ...++.+++...=...
T Consensus 151 raID~l~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~a 226 (502)
T 2qe7_A 151 KAIDSMIPIGRGQRELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTA 226 (502)
T ss_dssp HHHHHSSCCBTTCBCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEE
T ss_pred eecccccccccCCEEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEE
Confidence 3455554 233457899999999999996 4666653 245 35788888765 4566666665432111
Q ss_pred CCCCCChhH-----HHHHHHHHHh-cCCcEEEEEcCCCC
Q 037851 233 FDEESDVPG-----RARKLYARLQ-KENKILIILDNIWE 265 (1053)
Q Consensus 233 ~~~~~~~~~-----~~~~l~~~l~-~~~~~LlvlDdv~~ 265 (1053)
..+++.... ....+-+++. +++.+||++||+..
T Consensus 227 tad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dsltr 265 (502)
T 2qe7_A 227 SASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDLSK 265 (502)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHHH
Confidence 111111111 1123444444 47999999999843
No 470
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=88.03 E-value=0.33 Score=50.13 Aligned_cols=110 Identities=17% Similarity=0.170 Sum_probs=57.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCC-cCHHHHHHHHHH--HhCCCCCCCCChhHHHHHHHHH
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDT-PDIKKVQGELAD--QLGMQFDEESDVPGRARKLYAR 249 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~--~l~~~~~~~~~~~~~~~~l~~~ 249 (1053)
...+++|+|+.|.||||+++.+....... +.+.+++.-... +-.... ..+.. .++. +.......+.+.
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~~--~~G~I~~~g~~i~~~~~~~-~~~v~q~~~gl------~~~~l~~~la~a 94 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIEYVFKHK-KSIVNQREVGE------DTKSFADALRAA 94 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHHH--CCCEEEEEESSCCSCCCCS-SSEEEEEEBTT------TBSCHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCCC--CCCEEEEcCCcceeecCCc-ceeeeHHHhCC------CHHHHHHHHHHH
Confidence 44799999999999999999998876432 123333321110 000000 00000 0000 001223445555
Q ss_pred HhcCCcEEEEEcCCCCccchhhhcCCCCCCCCCcEEEEEecChHHH
Q 037851 250 LQKENKILIILDNIWEDLDLEKVGVPSGNDCRGCKVLLTARDRHVL 295 (1053)
Q Consensus 250 l~~~~~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~ 295 (1053)
+. .++=+|++|+..+......+.... ..|..|++||.+.+..
T Consensus 95 L~-~~p~illlDEp~D~~~~~~~l~~~---~~g~~vl~t~H~~~~~ 136 (261)
T 2eyu_A 95 LR-EDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTAI 136 (261)
T ss_dssp HH-HCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEECCSSHH
T ss_pred Hh-hCCCEEEeCCCCCHHHHHHHHHHH---ccCCEEEEEeCcchHH
Confidence 54 356688889997544333222221 2366788888876543
No 471
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=87.97 E-value=0.24 Score=51.11 Aligned_cols=25 Identities=32% Similarity=0.344 Sum_probs=21.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHh
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQV 198 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~ 198 (1053)
..+++|+|+.|.|||||++.++.-.
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC
Confidence 4699999999999999999997643
No 472
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=87.96 E-value=0.33 Score=46.00 Aligned_cols=23 Identities=17% Similarity=0.320 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 037851 175 TITGVYGMGGLGKTTLVKEVARQ 197 (1053)
Q Consensus 175 ~vi~I~G~~GiGKTtLa~~v~~~ 197 (1053)
..|+|+|.+|+|||||.+.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999998753
No 473
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=87.95 E-value=0.47 Score=50.20 Aligned_cols=40 Identities=25% Similarity=0.238 Sum_probs=29.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEc
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVS 213 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s 213 (1053)
...+++|+|.+|+|||||++.++........ ..++|++..
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G-~~v~~~~~e 73 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAMG-KKVGLAMLE 73 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHTSC-CCEEEEESS
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHHcC-CeEEEEeCc
Confidence 3469999999999999999999988764311 135566543
No 474
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=87.89 E-value=0.23 Score=48.10 Aligned_cols=24 Identities=21% Similarity=0.231 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 037851 175 TITGVYGMGGLGKTTLVKEVARQV 198 (1053)
Q Consensus 175 ~vi~I~G~~GiGKTtLa~~v~~~~ 198 (1053)
+.|.|.|+.|+||||||..++.+.
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 678999999999999999998653
No 475
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=87.85 E-value=0.25 Score=51.38 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=22.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHh
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQV 198 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 198 (1053)
...+++|+|+.|.|||||++.++.-.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34699999999999999999997654
No 476
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=87.83 E-value=0.24 Score=50.68 Aligned_cols=25 Identities=32% Similarity=0.404 Sum_probs=21.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHh
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQV 198 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~ 198 (1053)
..+++|+|+.|.|||||.+.++.-.
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3689999999999999999987654
No 477
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=87.81 E-value=1.5 Score=49.06 Aligned_cols=50 Identities=16% Similarity=0.149 Sum_probs=35.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHH
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELAD 227 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 227 (1053)
..++.|.|.+|+||||+|.+++.....++ ..++|++... +..++...++.
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~g--~~vl~fSlEm--s~~ql~~R~~~ 246 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLEM--GKKENIKRLIV 246 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHTT--CEEEEECSSS--CTTHHHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHcC--CEEEEEECCC--CHHHHHHHHHH
Confidence 46899999999999999999998876542 3577776554 33344444443
No 478
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=87.81 E-value=0.48 Score=46.79 Aligned_cols=44 Identities=18% Similarity=0.319 Sum_probs=32.4
Q ss_pred eEEEEE-cCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHH
Q 037851 175 TITGVY-GMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKK 220 (1053)
Q Consensus 175 ~vi~I~-G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~ 220 (1053)
++|+|+ +.||+||||+|..++......+ ..++.++.....+...
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g--~~vlliD~D~~~~~~~ 46 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSG--YNIAVVDTDPQMSLTN 46 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCC--CeEEEEECCCCCCHHH
Confidence 578887 6899999999999999887533 3467777765544433
No 479
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=87.81 E-value=0.3 Score=48.03 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHH
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQ 197 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~ 197 (1053)
.-.|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 356899999999999999999875
No 480
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=87.77 E-value=0.33 Score=49.52 Aligned_cols=26 Identities=23% Similarity=0.262 Sum_probs=23.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
...|.|.|..|+||||+++.+++...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999998864
No 481
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=87.71 E-value=0.23 Score=55.42 Aligned_cols=27 Identities=26% Similarity=0.468 Sum_probs=23.6
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHHHh
Q 037851 172 PDVTITGVYGMGGLGKTTLVKEVARQV 198 (1053)
Q Consensus 172 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 198 (1053)
....+|.|+|++|+||||+|+.++.+.
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 456899999999999999999998754
No 482
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=87.61 E-value=0.26 Score=51.09 Aligned_cols=25 Identities=36% Similarity=0.315 Sum_probs=21.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHh
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQV 198 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~ 198 (1053)
..+++|+|+.|.|||||++.++.-.
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4699999999999999999987543
No 483
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=87.50 E-value=0.26 Score=50.66 Aligned_cols=25 Identities=32% Similarity=0.367 Sum_probs=21.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHh
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQV 198 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~ 198 (1053)
..+++|+|+.|.|||||.+.++.-.
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3689999999999999999997654
No 484
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=87.43 E-value=0.33 Score=52.88 Aligned_cols=27 Identities=26% Similarity=0.140 Sum_probs=23.7
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHHHh
Q 037851 172 PDVTITGVYGMGGLGKTTLVKEVARQV 198 (1053)
Q Consensus 172 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 198 (1053)
+...+++|+|+.|.|||||++.++...
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 445799999999999999999999754
No 485
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=87.42 E-value=0.26 Score=51.43 Aligned_cols=25 Identities=32% Similarity=0.367 Sum_probs=21.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHh
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQV 198 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~ 198 (1053)
..+++|+|+.|.|||||++.++.-.
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4689999999999999999987644
No 486
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=87.39 E-value=0.6 Score=45.47 Aligned_cols=25 Identities=20% Similarity=0.153 Sum_probs=21.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHH
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQ 197 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~ 197 (1053)
....|.|+|.+|+|||||...+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468899999999999999998764
No 487
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=87.36 E-value=0.21 Score=55.62 Aligned_cols=37 Identities=24% Similarity=0.372 Sum_probs=28.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEE
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEV 212 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 212 (1053)
..+|.|+|.+|+||||+|..++.....++ + .++.++.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G-~-kVllv~~ 135 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRG-L-KPALIAA 135 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHH-C-CEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcC-C-eEEEEec
Confidence 46899999999999999999998876432 1 2444544
No 488
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=87.33 E-value=2.4 Score=47.08 Aligned_cols=97 Identities=15% Similarity=0.222 Sum_probs=56.6
Q ss_pred HHHHhc-CCCeeEEEEEcCCCCcHHHHH-HHHHHHhhhcCCCC-eEEEEEEcCCc-CHHHHHHHHHHHhCCC-------C
Q 037851 165 LQNALL-DPDVTITGVYGMGGLGKTTLV-KEVARQVKKDKHFD-EVVFAEVSDTP-DIKKVQGELADQLGMQ-------F 233 (1053)
Q Consensus 165 l~~~l~-~~~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~f~-~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~ 233 (1053)
.++.+. -.+..-++|.|..|+|||+|| ..+.+. ..-+ .++|+-+.+.. .+.++.+++.+.=... .
T Consensus 152 aID~l~PigrGQR~~Ifg~~g~GKT~l~l~~I~n~----~~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~at 227 (513)
T 3oaa_A 152 AVDSMIPIGRGQRELIIGDRQTGKTALAIDAIINQ----RDSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVAT 227 (513)
T ss_dssp HHHHHSCCBTTCBCEEEESSSSSHHHHHHHHHHTT----SSSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEEC
T ss_pred eeccccccccCCEEEeecCCCCCcchHHHHHHHhh----ccCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEEC
Confidence 345554 233457899999999999996 466653 2233 46788888775 4666777655431111 1
Q ss_pred CCCCChhH-----HHHHHHHHHh-cCCcEEEEEcCCCC
Q 037851 234 DEESDVPG-----RARKLYARLQ-KENKILIILDNIWE 265 (1053)
Q Consensus 234 ~~~~~~~~-----~~~~l~~~l~-~~~~~LlvlDdv~~ 265 (1053)
.+++.... ....+-+++. +++.+||++||+..
T Consensus 228 ad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr 265 (513)
T 3oaa_A 228 ASESAALQYLAPYAGCAMGEYFRDRGEDALIIYDDLSK 265 (513)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEETHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHHHhcCCCEEEEecChHH
Confidence 11111101 1122334443 58999999999843
No 489
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=87.16 E-value=0.29 Score=47.43 Aligned_cols=21 Identities=33% Similarity=0.485 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 037851 176 ITGVYGMGGLGKTTLVKEVAR 196 (1053)
Q Consensus 176 vi~I~G~~GiGKTtLa~~v~~ 196 (1053)
.|+|+|.+|+|||||++.+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 578999999999999999875
No 490
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=86.89 E-value=0.52 Score=54.19 Aligned_cols=28 Identities=25% Similarity=0.362 Sum_probs=24.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHhhh
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQVKK 200 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 200 (1053)
+..+|+|+|+.|.|||||++.++.....
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 4479999999999999999999998763
No 491
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=86.75 E-value=0.35 Score=51.66 Aligned_cols=26 Identities=31% Similarity=0.506 Sum_probs=23.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHHh
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQV 198 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 198 (1053)
+.++++|+|+.|.|||||.+.+....
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 57899999999999999999998653
No 492
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=86.75 E-value=0.35 Score=45.52 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 037851 176 ITGVYGMGGLGKTTLVKEVARQ 197 (1053)
Q Consensus 176 vi~I~G~~GiGKTtLa~~v~~~ 197 (1053)
.|.++|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999865
No 493
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=86.72 E-value=0.36 Score=50.10 Aligned_cols=24 Identities=38% Similarity=0.461 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 037851 176 ITGVYGMGGLGKTTLVKEVARQVK 199 (1053)
Q Consensus 176 vi~I~G~~GiGKTtLa~~v~~~~~ 199 (1053)
.++|+|..|+|||||.+.++....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 589999999999999999998654
No 494
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=86.61 E-value=0.69 Score=47.29 Aligned_cols=37 Identities=16% Similarity=0.190 Sum_probs=28.9
Q ss_pred HHHHHHHhcC--CCeeEEEEEcCCCCcHHHHHHHHHHHh
Q 037851 162 LKSLQNALLD--PDVTITGVYGMGGLGKTTLVKEVARQV 198 (1053)
Q Consensus 162 ~~~l~~~l~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~ 198 (1053)
...+..|+.. +...-|.++|++|.|||.+|..+++..
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 4456667763 334579999999999999999999864
No 495
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=86.56 E-value=0.49 Score=45.81 Aligned_cols=107 Identities=17% Similarity=0.072 Sum_probs=51.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcCHHHHHHHHHHHhCCCCC--CCCChhHHHHHHHHHHhc
Q 037851 175 TITGVYGMGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPDIKKVQGELADQLGMQFD--EESDVPGRARKLYARLQK 252 (1053)
Q Consensus 175 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~l~~~l~~ 252 (1053)
.++.|+|+.|+||||+|..++.+....+ . .++++...... +.-...+...++.... ...+. ..+.+.+.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g-~-~v~~~~~~~d~--r~~~~~i~s~~g~~~~~~~~~~~----~~~~~~~~- 74 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGK-K-KVAVFKPKIDS--RYHSTMIVSHSGNGVEAHVIERP----EEMRKYIE- 74 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTT-C-EEEEEEEC-------CCCEECC----CEECEEESSG----GGGGGGCC-
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCC-C-eEEEEeecccc--ccCcccEEecCCCceeeEEECCH----HHHHHHhc-
Confidence 5788999999999999977777665332 2 23344332110 0000001111111100 00111 12222221
Q ss_pred CCcEEEEEcCCCCc-cchhhhcCCCCCCCCCcEEEEEecCh
Q 037851 253 ENKILIILDNIWED-LDLEKVGVPSGNDCRGCKVLLTARDR 292 (1053)
Q Consensus 253 ~~~~LlvlDdv~~~-~~~~~l~~~~~~~~~gs~iivTtR~~ 292 (1053)
++.-+|++|.+... .+|......+.+ .|..|++|.++.
T Consensus 75 ~~~dvviIDE~Q~~~~~~~~~l~~l~~--~~~~Vi~~Gl~~ 113 (184)
T 2orw_A 75 EDTRGVFIDEVQFFNPSLFEVVKDLLD--RGIDVFCAGLDL 113 (184)
T ss_dssp TTEEEEEECCGGGSCTTHHHHHHHHHH--TTCEEEEEEESB
T ss_pred CCCCEEEEECcccCCHHHHHHHHHHHH--CCCCEEEEeecc
Confidence 34569999998654 334433322222 267899888754
No 496
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=86.53 E-value=2.4 Score=46.80 Aligned_cols=45 Identities=11% Similarity=0.152 Sum_probs=31.8
Q ss_pred CeeEEEEE-cCCCCcHHHHHHHHHHHhhhc----CCCCeEEEEEEcCCcC
Q 037851 173 DVTITGVY-GMGGLGKTTLVKEVARQVKKD----KHFDEVVFAEVSDTPD 217 (1053)
Q Consensus 173 ~~~vi~I~-G~~GiGKTtLa~~v~~~~~~~----~~f~~~~wv~~s~~~~ 217 (1053)
..++|+|+ |.||+||||+|..++...... ..=..++-|++....+
T Consensus 107 ~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~D~q~~ 156 (398)
T 3ez2_A 107 EAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDPQSS 156 (398)
T ss_dssp SCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEECTTCH
T ss_pred CCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCCCC
Confidence 46788877 789999999999999887631 0112466777765433
No 497
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=86.48 E-value=0.28 Score=49.71 Aligned_cols=25 Identities=24% Similarity=0.210 Sum_probs=22.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHHH
Q 037851 173 DVTITGVYGMGGLGKTTLVKEVARQ 197 (1053)
Q Consensus 173 ~~~vi~I~G~~GiGKTtLa~~v~~~ 197 (1053)
...+|+|.|..|.||||+++.++..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4579999999999999999998764
No 498
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=86.46 E-value=0.38 Score=45.48 Aligned_cols=24 Identities=21% Similarity=0.429 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHH
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQ 197 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~ 197 (1053)
.-.|.|+|.+|+|||||+..+...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 346789999999999999999864
No 499
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=86.42 E-value=0.61 Score=51.17 Aligned_cols=44 Identities=14% Similarity=0.229 Sum_probs=33.3
Q ss_pred CCeeEEEEEc-CCCCcHHHHHHHHHHHhhhcCCCCeEEEEEEcCCcC
Q 037851 172 PDVTITGVYG-MGGLGKTTLVKEVARQVKKDKHFDEVVFAEVSDTPD 217 (1053)
Q Consensus 172 ~~~~vi~I~G-~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 217 (1053)
.+.++|+|+| .||+||||+|..++......+ ..++.+++....+
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g--~rVlliD~D~~~~ 185 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANMG--KKVFYLNIEQCGT 185 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHHHT--CCEEEEECCTTCC
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHhCC--CCEEEEECCCCCC
Confidence 3568999985 999999999999998876532 2467788774444
No 500
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=86.38 E-value=0.45 Score=46.13 Aligned_cols=24 Identities=17% Similarity=0.293 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHH
Q 037851 174 VTITGVYGMGGLGKTTLVKEVARQ 197 (1053)
Q Consensus 174 ~~vi~I~G~~GiGKTtLa~~v~~~ 197 (1053)
...|+|+|.+|+|||||.+.+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999864
Done!