Query 037857
Match_columns 582
No_of_seqs 155 out of 185
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 05:03:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037857.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037857hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05701 WEMBL: Weak chloropla 100.0 7.6E-90 1.6E-94 760.6 68.5 491 36-541 1-522 (522)
2 PF05701 WEMBL: Weak chloropla 99.5 1.2E-08 2.6E-13 114.3 51.9 450 29-518 14-520 (522)
3 TIGR00606 rad50 rad50. This fa 98.4 0.021 4.4E-07 71.3 52.4 114 84-197 743-862 (1311)
4 PF10174 Cast: RIM-binding pro 98.3 0.022 4.8E-07 66.9 54.8 60 73-132 240-299 (775)
5 KOG0161 Myosin class II heavy 97.9 0.17 3.6E-06 64.6 64.5 238 319-571 1106-1365(1930)
6 TIGR02169 SMC_prok_A chromosom 97.9 0.13 2.7E-06 62.7 51.9 44 87-130 165-208 (1164)
7 COG1196 Smc Chromosome segrega 97.8 0.18 3.9E-06 62.3 49.8 328 86-444 166-498 (1163)
8 KOG0161 Myosin class II heavy 97.6 0.45 9.8E-06 60.8 65.8 104 81-194 1100-1208(1930)
9 PF10174 Cast: RIM-binding pro 97.6 0.32 7E-06 57.4 59.0 195 77-283 52-262 (775)
10 TIGR02169 SMC_prok_A chromosom 97.5 0.45 9.7E-06 58.0 51.3 29 98-126 169-197 (1164)
11 COG1196 Smc Chromosome segrega 97.5 0.57 1.2E-05 58.1 44.8 13 11-23 574-586 (1163)
12 PRK02224 chromosome segregatio 97.5 0.45 9.8E-06 56.8 62.1 21 262-282 408-428 (880)
13 KOG0933 Structural maintenance 97.5 0.27 5.9E-06 58.4 31.8 242 72-365 678-940 (1174)
14 TIGR02168 SMC_prok_B chromosom 97.4 0.58 1.2E-05 56.8 50.1 40 87-126 167-206 (1179)
15 PF00038 Filament: Intermediat 97.4 0.27 5.7E-06 51.5 34.2 102 71-202 18-120 (312)
16 TIGR02168 SMC_prok_B chromosom 97.3 0.69 1.5E-05 56.2 50.5 51 76-126 675-725 (1179)
17 PF00261 Tropomyosin: Tropomyo 96.9 0.57 1.2E-05 47.7 30.1 72 74-145 4-75 (237)
18 PF00261 Tropomyosin: Tropomyo 96.7 0.8 1.7E-05 46.6 29.6 49 318-366 177-225 (237)
19 PRK04778 septation ring format 96.5 2.3 5.1E-05 48.7 31.3 249 75-352 253-504 (569)
20 PRK02224 chromosome segregatio 96.4 3.2 7E-05 49.7 67.8 33 103-135 203-235 (880)
21 KOG4674 Uncharacterized conser 96.3 5.5 0.00012 50.9 53.8 201 162-367 680-880 (1822)
22 KOG0933 Structural maintenance 96.3 4.1 8.8E-05 49.0 34.0 53 476-531 959-1011(1174)
23 PF01576 Myosin_tail_1: Myosin 96.2 0.0017 3.7E-08 77.3 1.3 348 77-437 327-703 (859)
24 PF01576 Myosin_tail_1: Myosin 96.1 0.0014 3.1E-08 77.9 0.0 445 74-567 42-507 (859)
25 KOG0977 Nuclear envelope prote 96.1 3.5 7.6E-05 46.9 28.6 273 163-454 41-330 (546)
26 PF07888 CALCOCO1: Calcium bin 96.1 3.6 7.9E-05 46.8 42.1 162 76-243 141-327 (546)
27 KOG0964 Structural maintenance 96.1 5 0.00011 48.2 30.6 217 103-371 682-901 (1200)
28 PF07888 CALCOCO1: Calcium bin 96.0 4 8.6E-05 46.5 44.5 44 161-204 161-204 (546)
29 KOG0996 Structural maintenance 96.0 5.9 0.00013 48.4 41.2 73 160-239 387-459 (1293)
30 PF00038 Filament: Intermediat 96.0 2.6 5.6E-05 44.1 40.3 51 318-368 196-246 (312)
31 TIGR00606 rad50 rad50. This fa 95.8 8.5 0.00018 48.6 64.6 31 172-202 529-559 (1311)
32 KOG0250 DNA repair protein RAD 95.7 7.1 0.00015 47.4 38.3 181 164-361 207-388 (1074)
33 KOG0250 DNA repair protein RAD 95.7 7.6 0.00016 47.2 38.0 432 77-549 206-797 (1074)
34 KOG4674 Uncharacterized conser 95.5 11 0.00025 48.2 48.2 115 33-149 30-144 (1822)
35 KOG0977 Nuclear envelope prote 95.5 6.3 0.00014 44.9 32.3 128 87-237 94-221 (546)
36 KOG0994 Extracellular matrix g 93.5 24 0.00053 43.4 43.6 166 285-450 1415-1593(1758)
37 PRK11637 AmiB activator; Provi 93.2 16 0.00035 40.3 29.3 50 77-126 46-95 (428)
38 KOG0976 Rho/Rac1-interacting s 93.2 23 0.0005 42.0 52.7 112 410-546 407-522 (1265)
39 KOG0971 Microtubule-associated 92.8 27 0.00059 42.0 42.6 55 184-238 303-357 (1243)
40 PF12128 DUF3584: Protein of u 92.8 34 0.00074 42.9 57.7 58 398-455 468-525 (1201)
41 KOG0999 Microtubule-associated 92.6 23 0.00049 40.4 27.9 63 217-283 5-67 (772)
42 PRK03918 chromosome segregatio 91.2 40 0.00086 40.4 53.6 17 219-235 458-474 (880)
43 KOG0999 Microtubule-associated 90.2 39 0.00084 38.6 29.3 191 179-371 9-220 (772)
44 PF07926 TPR_MLP1_2: TPR/MLP1/ 90.1 16 0.00034 33.9 18.0 34 171-204 52-85 (132)
45 KOG0971 Microtubule-associated 90.1 51 0.0011 39.8 36.8 254 79-359 277-546 (1243)
46 KOG0980 Actin-binding protein 89.5 55 0.0012 39.4 34.6 82 161-242 400-481 (980)
47 KOG0964 Structural maintenance 89.4 60 0.0013 39.6 40.0 214 137-362 194-435 (1200)
48 PHA02562 46 endonuclease subun 88.8 47 0.001 37.5 30.2 19 172-190 175-193 (562)
49 PF12718 Tropomyosin_1: Tropom 88.8 11 0.00025 35.6 13.1 99 72-176 43-141 (143)
50 PRK11637 AmiB activator; Provi 88.4 45 0.00097 36.8 30.1 63 72-134 48-110 (428)
51 PF05276 SH3BP5: SH3 domain-bi 86.8 41 0.00088 34.7 28.2 216 281-535 4-226 (239)
52 COG4372 Uncharacterized protei 86.1 58 0.0013 35.8 31.9 38 77-114 80-117 (499)
53 COG1579 Zn-ribbon protein, pos 86.0 45 0.00098 34.4 23.6 50 317-366 89-138 (239)
54 PF09726 Macoilin: Transmembra 85.8 84 0.0018 37.3 28.6 188 90-297 444-655 (697)
55 KOG0996 Structural maintenance 85.6 1.1E+02 0.0023 38.3 59.2 165 77-253 404-568 (1293)
56 PF11570 E2R135: Coiled-coil r 84.4 30 0.00066 32.3 12.8 114 77-212 14-132 (136)
57 KOG0994 Extracellular matrix g 84.2 1.2E+02 0.0026 37.8 47.6 110 204-313 1406-1525(1758)
58 PHA02562 46 endonuclease subun 84.2 80 0.0017 35.7 29.6 51 259-309 227-279 (562)
59 COG1579 Zn-ribbon protein, pos 83.6 58 0.0012 33.6 25.0 70 219-295 116-185 (239)
60 KOG1029 Endocytic adaptor prot 83.0 1.1E+02 0.0024 36.5 30.6 233 71-360 374-613 (1118)
61 PF12325 TMF_TATA_bd: TATA ele 82.7 40 0.00087 31.1 13.6 91 73-197 18-108 (120)
62 COG1340 Uncharacterized archae 81.7 77 0.0017 33.7 35.2 63 392-454 193-255 (294)
63 PF12128 DUF3584: Protein of u 79.8 1.8E+02 0.0039 36.8 63.9 36 159-194 354-389 (1201)
64 PRK03918 chromosome segregatio 79.3 1.5E+02 0.0032 35.6 67.5 34 84-117 192-225 (880)
65 PF10498 IFT57: Intra-flagella 77.6 1.1E+02 0.0025 33.3 17.1 71 160-240 216-286 (359)
66 PF07926 TPR_MLP1_2: TPR/MLP1/ 77.0 62 0.0013 29.9 16.5 94 325-437 4-97 (132)
67 PF10473 CENP-F_leu_zip: Leuci 74.9 78 0.0017 30.0 19.4 66 175-240 14-79 (140)
68 PRK12472 hypothetical protein; 74.5 1E+02 0.0022 34.9 15.3 36 491-526 260-295 (508)
69 COG4372 Uncharacterized protei 74.2 1.5E+02 0.0032 32.8 31.8 119 78-233 74-192 (499)
70 PF10473 CENP-F_leu_zip: Leuci 72.9 87 0.0019 29.7 20.9 24 178-201 59-82 (140)
71 PRK09039 hypothetical protein; 72.8 1.4E+02 0.0031 32.2 21.4 22 216-237 70-91 (343)
72 KOG0018 Structural maintenance 69.7 2.9E+02 0.0063 34.4 37.7 243 77-369 651-901 (1141)
73 TIGR02680 conserved hypothetic 69.4 3.3E+02 0.0072 35.0 34.0 161 72-236 743-919 (1353)
74 PF06160 EzrA: Septation ring 68.8 2.2E+02 0.0049 32.8 43.6 49 320-368 375-423 (560)
75 PRK15422 septal ring assembly 66.7 84 0.0018 27.0 10.4 66 285-368 4-69 (79)
76 PF08614 ATG16: Autophagy prot 66.3 1.2E+02 0.0026 29.9 12.6 108 162-269 79-186 (194)
77 PF05557 MAD: Mitotic checkpoi 66.2 3.6 7.9E-05 48.5 2.3 40 416-455 381-420 (722)
78 PRK09039 hypothetical protein; 65.6 2E+02 0.0044 31.1 21.5 49 160-208 119-167 (343)
79 TIGR03185 DNA_S_dndD DNA sulfu 65.3 2.8E+02 0.006 32.5 39.3 72 80-152 184-255 (650)
80 KOG0980 Actin-binding protein 64.8 3.3E+02 0.0071 33.2 29.6 80 186-268 463-549 (980)
81 KOG0963 Transcription factor/C 63.7 2.9E+02 0.0064 32.3 32.2 43 318-368 318-360 (629)
82 PRK04863 mukB cell division pr 62.1 4.7E+02 0.01 34.1 48.2 351 79-445 287-677 (1486)
83 PRK10884 SH3 domain-containing 61.9 48 0.001 33.3 9.0 19 22-40 39-57 (206)
84 PF10498 IFT57: Intra-flagella 61.4 2.5E+02 0.0054 30.7 18.9 104 255-369 187-290 (359)
85 PF04012 PspA_IM30: PspA/IM30 61.1 1.8E+02 0.0039 28.9 24.4 50 77-126 29-78 (221)
86 KOG0804 Cytoplasmic Zn-finger 61.0 2.8E+02 0.0062 31.2 17.0 37 262-299 413-449 (493)
87 PF08317 Spc7: Spc7 kinetochor 60.6 2.4E+02 0.0051 30.1 25.2 117 322-454 154-271 (325)
88 PF08614 ATG16: Autophagy prot 57.5 1.4E+02 0.003 29.4 11.3 50 318-367 131-180 (194)
89 TIGR03185 DNA_S_dndD DNA sulfu 54.0 4.2E+02 0.0091 31.0 35.0 25 344-368 390-414 (650)
90 COG4942 Membrane-bound metallo 52.6 3.8E+02 0.0082 30.0 31.7 69 78-146 38-106 (420)
91 COG3074 Uncharacterized protei 52.2 1.4E+02 0.0031 25.1 10.0 66 285-368 4-69 (79)
92 PRK10884 SH3 domain-containing 52.2 2.6E+02 0.0057 28.1 12.4 41 328-368 129-169 (206)
93 PRK04778 septation ring format 52.1 4.3E+02 0.0093 30.5 49.9 111 72-200 80-190 (569)
94 PF05266 DUF724: Protein of un 51.6 2.6E+02 0.0056 27.8 12.8 81 33-120 64-145 (190)
95 cd07679 F-BAR_PACSIN2 The F-BA 51.1 3.1E+02 0.0068 28.7 17.0 139 29-200 49-197 (258)
96 PF09726 Macoilin: Transmembra 50.4 5.1E+02 0.011 30.9 30.8 20 104-123 430-449 (697)
97 PF04111 APG6: Autophagy prote 48.9 3.6E+02 0.0079 28.8 14.0 48 321-368 47-94 (314)
98 PF05335 DUF745: Protein of un 48.2 2.9E+02 0.0063 27.5 15.7 103 253-359 61-172 (188)
99 PF05557 MAD: Mitotic checkpoi 46.2 22 0.00048 42.0 4.3 21 475-495 496-516 (722)
100 PF12329 TMF_DNA_bd: TATA elem 45.7 1.8E+02 0.0039 24.4 10.0 64 289-352 2-68 (74)
101 PF10234 Cluap1: Clusterin-ass 45.2 3.9E+02 0.0085 28.1 14.1 49 318-366 170-218 (267)
102 PF05622 HOOK: HOOK protein; 44.5 7.4 0.00016 45.9 0.0 30 424-453 598-627 (713)
103 PF03962 Mnd1: Mnd1 family; I 43.2 3.4E+02 0.0074 26.8 15.0 51 299-349 117-167 (188)
104 PF10212 TTKRSYEDQ: Predicted 40.8 6.2E+02 0.013 29.1 14.4 22 84-105 308-329 (518)
105 KOG1103 Predicted coiled-coil 38.1 5.8E+02 0.012 28.0 20.8 124 31-180 53-190 (561)
106 KOG0612 Rho-associated, coiled 37.3 9.9E+02 0.021 30.5 41.7 24 259-282 667-690 (1317)
107 PF14662 CCDC155: Coiled-coil 37.3 4.4E+02 0.0096 26.4 26.0 169 75-282 12-181 (193)
108 PRK04863 mukB cell division pr 37.1 1.1E+03 0.024 30.9 45.8 15 397-411 584-598 (1486)
109 PF09787 Golgin_A5: Golgin sub 36.7 6.8E+02 0.015 28.5 28.6 40 324-363 274-313 (511)
110 KOG4360 Uncharacterized coiled 36.7 7.2E+02 0.015 28.7 16.2 90 184-284 218-307 (596)
111 KOG0976 Rho/Rac1-interacting s 36.1 8.9E+02 0.019 29.6 46.8 87 218-309 289-375 (1265)
112 PF10481 CENP-F_N: Cenp-F N-te 35.8 5.6E+02 0.012 27.2 14.1 59 71-136 18-76 (307)
113 PRK15136 multidrug efflux syst 34.5 6.4E+02 0.014 27.5 15.8 32 163-194 157-188 (390)
114 PF15397 DUF4618: Domain of un 34.0 5.7E+02 0.012 26.8 27.8 136 302-437 66-224 (258)
115 smart00787 Spc7 Spc7 kinetocho 34.0 6.2E+02 0.013 27.1 21.4 54 162-215 209-262 (312)
116 PF05529 Bap31: B-cell recepto 33.4 4E+02 0.0087 25.9 10.3 69 72-147 119-188 (192)
117 KOG4360 Uncharacterized coiled 32.8 8.2E+02 0.018 28.2 17.4 46 318-363 213-258 (596)
118 PF06005 DUF904: Protein of un 32.8 3E+02 0.0065 23.1 11.2 26 285-310 4-29 (72)
119 cd07681 F-BAR_PACSIN3 The F-BA 32.7 6E+02 0.013 26.6 12.0 23 30-52 50-72 (258)
120 COG2433 Uncharacterized conser 32.3 8.3E+02 0.018 28.8 13.5 22 33-55 295-316 (652)
121 COG4942 Membrane-bound metallo 31.9 7.8E+02 0.017 27.6 33.9 66 164-229 38-103 (420)
122 COG2433 Uncharacterized conser 31.5 9.2E+02 0.02 28.4 18.1 50 319-368 417-466 (652)
123 PF15556 Zwint: ZW10 interacto 31.3 5.8E+02 0.013 26.0 13.5 102 84-194 69-171 (252)
124 TIGR02680 conserved hypothetic 31.1 1.3E+03 0.027 29.9 38.7 56 502-561 440-495 (1353)
125 KOG1962 B-cell receptor-associ 30.7 3.9E+02 0.0084 27.3 9.6 46 322-367 163-208 (216)
126 KOG0979 Structural maintenance 30.4 1.2E+03 0.025 29.2 32.2 105 17-121 559-679 (1072)
127 PF02050 FliJ: Flagellar FliJ 30.2 3.5E+02 0.0075 23.1 16.9 81 171-251 5-90 (123)
128 PF05377 FlaC_arch: Flagella a 30.1 2.9E+02 0.0062 22.3 6.8 30 319-348 16-45 (55)
129 PF05377 FlaC_arch: Flagella a 30.1 2.1E+02 0.0045 23.1 6.0 37 333-369 2-38 (55)
130 PF07889 DUF1664: Protein of u 29.4 4.7E+02 0.01 24.4 12.2 80 342-443 40-119 (126)
131 PRK12472 hypothetical protein; 28.9 9.3E+02 0.02 27.6 13.4 88 81-189 214-301 (508)
132 COG1842 PspA Phage shock prote 28.2 6.6E+02 0.014 25.7 23.9 50 320-369 27-76 (225)
133 PF15254 CCDC14: Coiled-coil d 28.2 8.1E+02 0.018 29.7 12.8 47 418-464 492-544 (861)
134 PF12777 MT: Microtubule-bindi 27.6 3.3E+02 0.0072 29.2 9.3 63 164-226 228-290 (344)
135 PF10168 Nup88: Nuclear pore c 27.1 1.2E+03 0.025 28.1 20.4 101 93-193 566-668 (717)
136 TIGR01843 type_I_hlyD type I s 27.1 7.9E+02 0.017 26.2 22.1 35 163-197 195-229 (423)
137 PF15249 GLTSCR1: Glioma tumor 26.6 39 0.00084 30.4 1.6 15 34-48 16-30 (109)
138 PF15294 Leu_zip: Leucine zipp 26.2 8.1E+02 0.017 26.0 15.2 26 222-247 127-152 (278)
139 PF12777 MT: Microtubule-bindi 26.0 6.2E+02 0.013 27.2 11.0 68 110-179 246-313 (344)
140 PF04880 NUDE_C: NUDE protein, 25.7 1.1E+02 0.0024 29.9 4.6 22 287-308 2-23 (166)
141 PF11365 DUF3166: Protein of u 25.2 2.4E+02 0.0052 25.2 6.2 45 71-115 1-45 (96)
142 PF05622 HOOK: HOOK protein; 25.2 24 0.00051 41.7 0.0 61 180-240 241-304 (713)
143 PRK10476 multidrug resistance 24.9 8.4E+02 0.018 25.8 18.5 31 163-193 151-181 (346)
144 PHA03011 hypothetical protein; 24.7 5.3E+02 0.011 23.3 8.6 53 184-236 63-115 (120)
145 PF12718 Tropomyosin_1: Tropom 24.5 6E+02 0.013 23.9 20.5 24 224-247 77-100 (143)
146 PRK09973 putative outer membra 24.0 3.5E+02 0.0077 23.6 6.9 44 400-443 25-68 (85)
147 PRK01156 chromosome segregatio 23.9 1.3E+03 0.029 27.8 53.1 347 75-458 302-733 (895)
148 KOG0972 Huntingtin interacting 23.7 9.3E+02 0.02 25.9 18.2 103 254-371 193-299 (384)
149 PF12761 End3: Actin cytoskele 23.6 4.5E+02 0.0098 26.4 8.5 88 274-366 97-195 (195)
150 PF08606 Prp19: Prp19/Pso4-lik 23.5 4.5E+02 0.0098 22.2 8.7 42 166-207 10-51 (70)
151 PRK15030 multidrug efflux syst 22.8 6.9E+02 0.015 27.1 10.8 32 163-194 140-171 (397)
152 PF12001 DUF3496: Domain of un 22.7 4.4E+02 0.0094 24.2 7.6 51 73-123 9-67 (111)
153 PF13851 GAS: Growth-arrest sp 22.5 7.8E+02 0.017 24.5 23.3 153 162-329 32-190 (201)
154 PRK15396 murein lipoprotein; P 22.2 4.4E+02 0.0095 22.6 7.1 33 402-434 28-60 (78)
155 KOG3647 Predicted coiled-coil 22.1 9.6E+02 0.021 25.5 11.6 47 319-365 114-160 (338)
156 COG1340 Uncharacterized archae 22.0 9.9E+02 0.021 25.6 35.1 61 397-457 191-251 (294)
157 PF05384 DegS: Sensor protein 21.9 7.4E+02 0.016 24.0 19.6 78 291-368 76-156 (159)
158 KOG1003 Actin filament-coating 21.8 8.4E+02 0.018 24.7 25.2 192 72-292 12-204 (205)
159 PF09036 Bcr-Abl_Oligo: Bcr-Ab 21.6 2.8E+02 0.006 23.7 5.5 48 314-361 23-70 (79)
160 COG1394 NtpD Archaeal/vacuolar 21.3 2.8E+02 0.006 28.2 6.7 80 24-126 111-190 (211)
161 KOG0979 Structural maintenance 21.2 1.7E+03 0.036 27.9 29.2 112 256-371 245-358 (1072)
162 KOG3478 Prefoldin subunit 6, K 21.2 6.5E+02 0.014 23.2 12.7 98 266-367 5-112 (120)
163 PF00769 ERM: Ezrin/radixin/mo 21.1 9.1E+02 0.02 24.8 18.3 43 84-126 4-46 (246)
164 TIGR03545 conserved hypothetic 21.0 9.6E+02 0.021 27.9 11.7 39 325-363 213-251 (555)
165 PRK09578 periplasmic multidrug 20.9 7.7E+02 0.017 26.6 10.6 32 163-194 138-169 (385)
166 KOG0804 Cytoplasmic Zn-finger 20.9 1.3E+03 0.027 26.3 14.9 57 164-234 347-403 (493)
167 PF10146 zf-C4H2: Zinc finger- 20.5 9.3E+02 0.02 24.7 15.5 48 320-367 56-103 (230)
168 COG4477 EzrA Negative regulato 20.0 1.4E+03 0.03 26.6 32.8 273 75-410 252-527 (570)
No 1
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=100.00 E-value=7.6e-90 Score=760.62 Aligned_cols=491 Identities=39% Similarity=0.512 Sum_probs=468.2
Q ss_pred CCCcccHHHHHHhhchhhhcccCCCcchhhccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 36 RAPFQSVKAAVSLFGEVKLANNKNKPLFRRTRLSSENVLDKETQLLLARKEIERTKKLLESSESTRARALGDLERAKRTM 115 (582)
Q Consensus 36 ~apf~SVk~Avs~FG~~~~~k~~~~~~~~r~~~~~e~v~~~e~qL~~aqeel~k~keql~~aE~~K~qal~ELe~aKr~v 115 (582)
+|||+|||+|||+|||+++|| |. ++++++..+++||+++|+|+++|++++..+|.+|++|++||++||++|
T Consensus 1 ~apf~SVk~Avs~FG~~~~~k----~~-----~~~e~~~~~e~eL~~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~v 71 (522)
T PF05701_consen 1 SAPFESVKEAVSLFGGSIDWK----KH-----QSLERVKEKETELEKAQEELAKLKEQLEAAEREKAQALSELESAKRTV 71 (522)
T ss_pred CCCChHHHHHHHHcCCccccc----cC-----CchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999882 11 344899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 116 LELTTKLKAVKDSKESAIAAAEHVRKQAKQLEEAKSQKNIGGIAVERKQQVDIAREHYAITASKIDAAKQELNRIRQDFD 195 (582)
Q Consensus 116 eeL~~kLe~a~~~~~~A~e~sE~~k~r~~ElEq~~~~~~~~~~e~a~k~eLe~~r~qya~~~aeL~svk~EL~klr~e~~ 195 (582)
++|+++|+.++.++.+|+++++++++|+++|++|+++.++ +.|+.+|+++++||+.++++|++|++||.++|++|+
T Consensus 72 eel~~kLe~~~~~~~~a~~~~e~~k~r~~e~e~~~~~~~~----~~~k~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~ 147 (522)
T PF05701_consen 72 EELKLKLEKAQAEEKQAEEDSELAKFRAKELEQGIAEEAS----VAWKAELESAREQYASAVAELDSVKQELEKLRQELA 147 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHhhhhcccch----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988653 569999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHH
Q 037857 196 AALEAKHSALQQAAEAQRLAKVSSERVADLRKQLSAMKEGIKQIKLAAQEATDEQARIVSEKDTLMQSYKAAQEAAENKL 275 (582)
Q Consensus 196 s~~eak~~A~~~a~ea~~~a~~~~~kveeLt~El~~lke~l~~~~~a~~eA~ee~~~i~~e~~~~~~~~~~~l~e~e~~l 275 (582)
+++++|+.|+++|++|+++++.|.++|++|+.||+++|++|+++|++|++|++++.+|..+++.++..|+..|++++.+|
T Consensus 148 ~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~~~a~~eAeee~~~~~~~~~~~~~~~~~~leeae~~l 227 (522)
T PF05701_consen 148 SALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIALKESLESAKLAHIEAEEERIEIAAEREQDAEEWEKELEEAEEEL 227 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhccHHhHHHHHHHHHHhHHHHHHHHHHHHHHhHhhHHH--------------HHHHHHHHHHHHHHHHHHHHHHH
Q 037857 276 NSLKKEYDPQLTENLEIQLAQTTEEIKVLQKQMKQAHAAEMDS--------------MRAVTAELNKATKSLQEAADEEC 341 (582)
Q Consensus 276 ~~Lk~el~~el~~~LE~kL~et~~~ie~Lq~el~~~~~~e~~s--------------v~s~~~ELeeaK~~Lek~~eE~~ 341 (582)
++|+.++ +.+++|+++|..++.++..|+.+|+.++.+.++. |.+++.||++++.+|+++++|++
T Consensus 228 ~~L~~e~--~~~k~Le~kL~~a~~~l~~Lq~El~~~~~~~l~~~~~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~ 305 (522)
T PF05701_consen 228 EELKEEL--EAAKDLESKLAEASAELESLQAELEAAKESKLEEEAEAKEKSSELQSSLASAKKELEEAKKELEKAKEEAS 305 (522)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999 6899999999999999999999999999877765 99999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHh-HHhHHHHhhhh--hH----hhhhhhhHHHHHHHHHHHHHHHHH
Q 037857 342 SLRNLVASLKLELEDVQKECAELKEKEAEM--EVIK-GALMESIAKES--AV----ECEDSLNEHKLELEKLSAETETAM 412 (582)
Q Consensus 342 ~l~~~v~SLr~ELek~K~el~~Lke~E~~a--~~~~-~~eL~~~kse~--a~----~~~e~~~~l~~~lqql~~Eae~ak 412 (582)
+|+..++||+.||+++|.++..++++++++ .+.+ +.+|++++++. +. .+.+.+.+|+..|++++.|++.|+
T Consensus 306 ~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak 385 (522)
T PF05701_consen 306 SLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAK 385 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998 5566 99999999994 22 244557899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC--------CCCCCCccccHHhh
Q 037857 413 KEEAVIKEEAEHLKQAAEAARMLAKEAEKNLQLALSEVEQAKASERKALGELNVLSIK--------PDSASNITISKEEF 484 (582)
Q Consensus 413 ~eae~~~~E~~k~k~E~e~~ka~~~t~E~rL~aa~kE~EAakasEa~Alaeik~l~e~--------s~~~~~Itis~eEy 484 (582)
+++..++.++.+++.+++++++.+.|++.||+++++|++++|+||++|+++|++|+++ ++++++||||++||
T Consensus 386 ~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaKasEa~Ala~ik~l~e~~~~~~~~~~~~~~~Vtls~eEy 465 (522)
T PF05701_consen 386 KEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAAKASEALALAEIKALSESESSSRASDSESSSKVTLSLEEY 465 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCCCCeeecHHHH
Confidence 9999999999999999999999999999999999999999999999999999999986 23789999999999
Q ss_pred HHhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 485 DSLNKAVEESVAVAEKKLAEAEAQLLVINARKNEADKKLEANLTDVEEIKNATEAAL 541 (582)
Q Consensus 485 e~L~~ka~eaEe~a~kkvaaA~aqve~akase~e~l~kLe~~~~eie~~k~ale~Al 541 (582)
++|++|++++++++++||++||+||+++|+|++++|+||++++++|+++|.+|..|+
T Consensus 466 ~~L~~ka~e~ee~a~kkva~A~aqve~ak~se~e~l~kle~~~~e~~~~k~al~~Al 522 (522)
T PF05701_consen 466 ESLSKKAEEAEELAEKKVAAAMAQVEAAKASEKEILEKLEEAMKEIEERKEALEEAL 522 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999999999999999999985
No 2
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=99.49 E-value=1.2e-08 Score=114.31 Aligned_cols=450 Identities=21% Similarity=0.224 Sum_probs=261.8
Q ss_pred cccccccCCCcccHHHHHHhhchhhhccc-CCCcchhhccccchhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 29 EVGEIDTRAPFQSVKAAVSLFGEVKLANN-KNKPLFRRTRLSSENVLD-KETQLLLARKEIERTKKLLESSESTRARALG 106 (582)
Q Consensus 29 ~~~~iDt~apf~SVk~Avs~FG~~~~~k~-~~~~~~~r~~~~~e~v~~-~e~qL~~aqeel~k~keql~~aE~~K~qal~ 106 (582)
|+|.|||++| +++ ..+ .+.+.-+.++ .+-+.++++....|.... .-.+|..+++-+..++.+|..+...+.++..
T Consensus 14 FG~~~~~k~~-~~~-e~~-~~~e~eL~~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kLe~~~~~~~~a~~ 90 (522)
T PF05701_consen 14 FGGSIDWKKH-QSL-ERV-KEKETELEKAQEELAKLKEQLEAAEREKAQALSELESAKRTVEELKLKLEKAQAEEKQAEE 90 (522)
T ss_pred cCCccccccC-Cch-hhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7799999998 555 212 2222112211 122334443333343222 2458999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 037857 107 DLERAKRTMLELTTKLKAVKDSKESAIAAAEHVRKQAKQLEEAKSQKNIGGIAVERKQQVDIAREHYAITASKIDAAKQ- 185 (582)
Q Consensus 107 ELe~aKr~veeL~~kLe~a~~~~~~A~e~sE~~k~r~~ElEq~~~~~~~~~~e~a~k~eLe~~r~qya~~~aeL~svk~- 185 (582)
+.+-++-.+.++...+-.- ........++.++.|+.. .++. -...+++|..+|..|+.++.+-..+-.
T Consensus 91 ~~e~~k~r~~e~e~~~~~~--~~~~~k~ele~~~~q~~~---~~~e------L~~~k~EL~~lr~e~~~~~~~k~~A~~~ 159 (522)
T PF05701_consen 91 DSELAKFRAKELEQGIAEE--ASVAWKAELESAREQYAS---AVAE------LDSVKQELEKLRQELASALDAKNAALKQ 159 (522)
T ss_pred hhHHhHHHHHHHhhhhccc--chHHHHHHHHHHHHHHHH---HHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999997765432 112255556666665444 2222 245677888888888777655444433
Q ss_pred --------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhh-HHHHHHHHH
Q 037857 186 --------------------ELNRIRQDFDAALEAKHSALQQAAEAQRLAKVSSERVADLRKQLSAMKEG-IKQIKLAAQ 244 (582)
Q Consensus 186 --------------------EL~klr~e~~s~~eak~~A~~~a~ea~~~a~~~~~kveeLt~El~~lke~-l~~~~~a~~ 244 (582)
||..++..++++-.+...|..+-. .|..-++. .......-.
T Consensus 160 aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~~~a~~eAeee~~------------------~~~~~~~~~~~~~~~~le 221 (522)
T PF05701_consen 160 AEEAVSAAEENEEKVEELSKEIIALKESLESAKLAHIEAEEERI------------------EIAAEREQDAEEWEKELE 221 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHH
Confidence 333333333332222222221111 11110110 001111122
Q ss_pred HHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHhhhccHHhHHHHHHH------HHHhHHHHHHHHHHHHHHhHh----
Q 037857 245 EATDEQARIVSEKDTLMQSYKAAQEAAENKLNSLKKEYDPQLTENLEIQ------LAQTTEEIKVLQKQMKQAHAA---- 314 (582)
Q Consensus 245 eA~ee~~~i~~e~~~~~~~~~~~l~e~e~~l~~Lk~el~~el~~~LE~k------L~et~~~ie~Lq~el~~~~~~---- 314 (582)
+++++...+.. .......++..|..+...|..|+.++..-....+... -......+..+..+|+.++..
T Consensus 222 eae~~l~~L~~-e~~~~k~Le~kL~~a~~~l~~Lq~El~~~~~~~l~~~~~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~ 300 (522)
T PF05701_consen 222 EAEEELEELKE-ELEAAKDLESKLAEASAELESLQAELEAAKESKLEEEAEAKEKSSELQSSLASAKKELEEAKKELEKA 300 (522)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333222 2244556666677777777777776532111112210 001112344555555444332
Q ss_pred --hH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHh-HHhHHHHhhh
Q 037857 315 --EM----DSMRAVTAELNKATKSLQEAADEECSLRNLVASLKLELEDVQKECAELKEKEAEM--EVIK-GALMESIAKE 385 (582)
Q Consensus 315 --e~----~sv~s~~~ELeeaK~~Lek~~eE~~~l~~~v~SLr~ELek~K~el~~Lke~E~~a--~~~~-~~eL~~~kse 385 (582)
+. ..|.++..||+.+|..|..++.........|.+|..+|.+.+.+|..++..+..+ .... ...|+.+.++
T Consensus 301 k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~E 380 (522)
T PF05701_consen 301 KEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSE 380 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHH
Confidence 11 4689999999999999999999999999999999999999999999999988766 3333 6777776666
Q ss_pred h--hHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH------
Q 037857 386 S--AVECEDSLNEHKLELEKLSAETETAMKEEAVIKEEAEHLKQAAEAARMLAKEAEKNLQLALSEVEQAKASE------ 457 (582)
Q Consensus 386 ~--a~~~~e~~~~l~~~lqql~~Eae~ak~eae~~~~E~~k~k~E~e~~ka~~~t~E~rL~aa~kE~EAakasE------ 457 (582)
. ++... ..+...+..+..+++.++.....+...+.-+..+++.+|+.-..+=..+.+...-...++.+.
T Consensus 381 ae~Ak~ea---~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaKasEa~Ala~ik~l~e~~~~~~~~~~~~~~~ 457 (522)
T PF05701_consen 381 AEEAKKEA---EEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAAKASEALALAEIKALSESESSSRASDSESSSK 457 (522)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCCCC
Confidence 3 22111 234556777788888888888888888888888888888776665555555433333333322
Q ss_pred -HHHHHHHhhhhcC---CC--CCCCccccHHhhHHhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhHH
Q 037857 458 -RKALGELNVLSIK---PD--SASNITISKEEFDSLNKAVEESVAVAEKKLAEAEAQLLVINARKNE 518 (582)
Q Consensus 458 -a~Alaeik~l~e~---s~--~~~~Itis~eEye~L~~ka~eaEe~a~kkvaaA~aqve~akase~e 518 (582)
.+.+.++-.|+.. .+ .+..|.-.+..-+ -+..++..+-+|+..++-.|+..|..-.+
T Consensus 458 Vtls~eEy~~L~~ka~e~ee~a~kkva~A~aqve----~ak~se~e~l~kle~~~~e~~~~k~al~~ 520 (522)
T PF05701_consen 458 VTLSLEEYESLSKKAEEAEELAEKKVAAAMAQVE----AAKASEKEILEKLEEAMKEIEERKEALEE 520 (522)
T ss_pred eeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1455566655543 00 1122322222222 23566777788888888888877765433
No 3
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.38 E-value=0.021 Score=71.25 Aligned_cols=114 Identities=12% Similarity=0.153 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHhhhccCc
Q 037857 84 RKEIERTKKLLESSESTRARALGDLERAKRTMLELTTKLKAVKDSKESA------IAAAEHVRKQAKQLEEAKSQKNIGG 157 (582)
Q Consensus 84 qeel~k~keql~~aE~~K~qal~ELe~aKr~veeL~~kLe~a~~~~~~A------~e~sE~~k~r~~ElEq~~~~~~~~~ 157 (582)
..++|.++.++...+..-..+..+|+.....+..+...++.+..-.... ..++...+.++.+++.....-.+..
T Consensus 743 ~~eip~l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~esL~~~v~~i~r~~~ei~~l~~qie~l~~~l~~~~~~~ 822 (1311)
T TIGR00606 743 EKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDR 822 (1311)
T ss_pred HhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccC
Confidence 3566666666666666666666666666666666666665553211111 3445555555555544322111101
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 158 IAVERKQQVDIAREHYAITASKIDAAKQELNRIRQDFDAA 197 (582)
Q Consensus 158 ~e~a~k~eLe~~r~qya~~~aeL~svk~EL~klr~e~~s~ 197 (582)
.-...+.++......+.....++.....+..+++.++..+
T Consensus 823 s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~L 862 (1311)
T TIGR00606 823 TVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHL 862 (1311)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1134666666666666666555555555555555444443
No 4
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.26 E-value=0.022 Score=66.86 Aligned_cols=60 Identities=27% Similarity=0.194 Sum_probs=47.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 73 VLDKETQLLLARKEIERTKKLLESSESTRARALGDLERAKRTMLELTTKLKAVKDSKESA 132 (582)
Q Consensus 73 v~~~e~qL~~aqeel~k~keql~~aE~~K~qal~ELe~aKr~veeL~~kLe~a~~~~~~A 132 (582)
...++..|..++.++..++-+...+...+.....+|+.-+.....++.+++.+...-...
T Consensus 240 i~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk 299 (775)
T PF10174_consen 240 IASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRK 299 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 344566777789999999999998899999998899888888888888877776433333
No 5
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=97.93 E-value=0.17 Score=64.59 Aligned_cols=238 Identities=21% Similarity=0.236 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHhhhh------------
Q 037857 319 MRAVTAELNKATKSLQEAADEECSLRNLVASLKLELEDVQKECAELKEKEAEMEVIKGALMESIAKES------------ 386 (582)
Q Consensus 319 v~s~~~ELeeaK~~Lek~~eE~~~l~~~v~SLr~ELek~K~el~~Lke~E~~a~~~~~~eL~~~kse~------------ 386 (582)
+..+..+|+.-+....++.-.-.-|...+..|+.+|+..-..+....+....- ..++.+++...
T Consensus 1106 i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~----e~e~~~l~~~leee~~~~e~~~~ 1181 (1930)
T KOG0161|consen 1106 IKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKR----EAEVQKLRRDLEEETLDHEAQIE 1181 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH----HHHHHHHHHHHHHHHHhHHHHHH
Confidence 44555566666666666666666666666666666666522222221111111 22333332220
Q ss_pred -h-HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 387 -A-VECEDSLNEHKLELEKLSAETETAMKEEAVIKEEAEHLKQAAEAARMLAKEAEKNLQLALSEVEQAKASERKALGEL 464 (582)
Q Consensus 387 -a-~~~~e~~~~l~~~lqql~~Eae~ak~eae~~~~E~~k~k~E~e~~ka~~~t~E~rL~aa~kE~EAakasEa~Alaei 464 (582)
. ....+....+...++++...-....++-..+..+...+..++.+.-..-...+.+. +..|+ =+.++
T Consensus 1182 ~lr~~~~~~~~el~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~----------k~~E~-~l~el 1250 (1930)
T KOG0161|consen 1182 ELRKKHADSLAELQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKD----------KKLEA-QLSEL 1250 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHH----------HHHHH-HHHHH
Confidence 0 11222223444555555544444444444455555555555554443333333333 22221 11111
Q ss_pred hhhhcC-----CCCCCCccccHHhhHHhhHHHHHHHHHHH---hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 037857 465 NVLSIK-----PDSASNITISKEEFDSLNKAVEESVAVAE---KKLAEAEAQLLVINARKNEADKKLEANLTDVEEIKNA 536 (582)
Q Consensus 465 k~l~e~-----s~~~~~Itis~eEye~L~~ka~eaEe~a~---kkvaaA~aqve~akase~e~l~kLe~~~~eie~~k~a 536 (582)
...... ++-....+=+..|+..|.+...+++-... +....-..|++..+.---+..+.-..+...+......
T Consensus 1251 q~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e 1330 (1930)
T KOG0161|consen 1251 QLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEETREKSALENALRQLEHE 1330 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111 11112344466778888888877776543 3444555666666555555555555555566666666
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHhhh
Q 037857 537 TEAALKSAETATAAQSMVEAELRRWRQQEEQWLRL 571 (582)
Q Consensus 537 le~Al~raE~A~~aK~avE~ELRrwR~e~~q~r~~ 571 (582)
...-.++.|....++-.++..|-+-..+..+||+-
T Consensus 1331 ~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k 1365 (1930)
T KOG0161|consen 1331 LDLLREQLEEEQEAKNELERKLSKANAELAQWKKK 1365 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777778888888888888888888888888764
No 6
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.91 E-value=0.13 Score=62.68 Aligned_cols=44 Identities=14% Similarity=0.180 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 87 IERTKKLLESSESTRARALGDLERAKRTMLELTTKLKAVKDSKE 130 (582)
Q Consensus 87 l~k~keql~~aE~~K~qal~ELe~aKr~veeL~~kLe~a~~~~~ 130 (582)
+..|..++..+...-.++...+.+-+..+.+|..+++.+.....
T Consensus 165 ~~~~~~~~~~~~~~l~~~~~~l~el~~~~~~L~~q~~~l~~~~e 208 (1164)
T TIGR02169 165 VAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRRERE 208 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666665555555666666666666677766666654333
No 7
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.84 E-value=0.18 Score=62.32 Aligned_cols=328 Identities=21% Similarity=0.293 Sum_probs=142.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHH
Q 037857 86 EIERTKKLLESSESTRARALGDLERAKRTMLELTTKLKAVKDSKESAIAAAEHVRKQAKQLEEAKSQKNIGGIAVERKQQ 165 (582)
Q Consensus 86 el~k~keql~~aE~~K~qal~ELe~aKr~veeL~~kLe~a~~~~~~A~e~sE~~k~r~~ElEq~~~~~~~~~~e~a~k~e 165 (582)
.+.+|+.+...++..=.++..-|++-...+.+|..+|+.-......|..-..+-. .... .+
T Consensus 166 Gv~~y~~r~~ea~~~L~~~~~nl~~~~~~~~el~~~l~~L~~q~~~a~~y~~l~~-e~~~------------------~~ 226 (1163)
T COG1196 166 GVSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKA-ELRE------------------LE 226 (1163)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH------------------HH
Confidence 3568888888888877777888888788888888888777644444442221110 0011 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 037857 166 VDIAREHYAITASKIDAAKQELNRIRQDFDAALEAKHSALQQAAEAQRLAKVSSERVADLRKQLSAMKEGIKQIKLAAQE 245 (582)
Q Consensus 166 Le~~r~qya~~~aeL~svk~EL~klr~e~~s~~eak~~A~~~a~ea~~~a~~~~~kveeLt~El~~lke~l~~~~~a~~e 245 (582)
......+|-.....|..+.+++..++.++.................. .++.++..++..+...+........+
T Consensus 227 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~-------~~~~e~~~~~~~~~~~~~~~~~~~~~ 299 (1163)
T COG1196 227 LALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELK-------SELEELREELEELQEELLELKEEIEE 299 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333455555556666666666666666555555444443333222 22333333333332222211111111
Q ss_pred HHHHHHHHHH---hhhHhHHHHHHHHHHHHHHHHHHhhhccHH--hHHHHHHHHHHhHHHHHHHHHHHHHHhHhhHHHHH
Q 037857 246 ATDEQARIVS---EKDTLMQSYKAAQEAAENKLNSLKKEYDPQ--LTENLEIQLAQTTEEIKVLQKQMKQAHAAEMDSMR 320 (582)
Q Consensus 246 A~ee~~~i~~---e~~~~~~~~~~~l~e~e~~l~~Lk~el~~e--l~~~LE~kL~et~~~ie~Lq~el~~~~~~e~~sv~ 320 (582)
-+.+...+.. ........+...+.+....+..++..+... +...++.........+..++..+..........+.
T Consensus 300 le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 379 (1163)
T COG1196 300 LEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFE 379 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 1111111111 111222344444555555555555554210 12222222222222222222222211111111233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHhhhhhHhhhhhhhHHHHH
Q 037857 321 AVTAELNKATKSLQEAADEECSLRNLVASLKLELEDVQKECAELKEKEAEMEVIKGALMESIAKESAVECEDSLNEHKLE 400 (582)
Q Consensus 321 s~~~ELeeaK~~Lek~~eE~~~l~~~v~SLr~ELek~K~el~~Lke~E~~a~~~~~~eL~~~kse~a~~~~e~~~~l~~~ 400 (582)
....++......+.....+...+...+.+|..++.+....+..+....... ..++..++.+. ......+..+...
T Consensus 380 ~~~~~~~~~~~~~~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~l~~~ 454 (1163)
T COG1196 380 ALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKEL----EAELEELQTEL-EELNEELEELEEQ 454 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhhhH-HHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444444444443322211 11111111110 0011111233444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 037857 401 LEKLSAETETAMKEEAVIKEEAEHLKQAAEAARMLAKEAEKNLQ 444 (582)
Q Consensus 401 lqql~~Eae~ak~eae~~~~E~~k~k~E~e~~ka~~~t~E~rL~ 444 (582)
++.+........+....++.....+..++......+.+.+....
T Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~ 498 (1163)
T COG1196 455 LEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQR 498 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44555555555555555666666666666666666666666544
No 8
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=97.63 E-value=0.45 Score=60.85 Aligned_cols=104 Identities=17% Similarity=0.220 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 037857 81 LLARKEIERTKKLLESSESTRARALGDLERAKRTMLELTTKLKAVKD-----SKESAIAAAEHVRKQAKQLEEAKSQKNI 155 (582)
Q Consensus 81 ~~aqeel~k~keql~~aE~~K~qal~ELe~aKr~veeL~~kLe~a~~-----~~~~A~e~sE~~k~r~~ElEq~~~~~~~ 155 (582)
..++..+..+.+.++.-.+.++++......-...+++|+..|+.... ...-...+.++.+++. -|+...
T Consensus 1100 ~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~-~leee~----- 1173 (1930)
T KOG0161|consen 1100 KELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRR-DLEEET----- 1173 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH-HHHHHH-----
Confidence 33444444444455544455555444444445555666666665521 1111233344444431 123322
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 156 GGIAVERKQQVDIAREHYAITASKIDAAKQELNRIRQDF 194 (582)
Q Consensus 156 ~~~e~a~k~eLe~~r~qya~~~aeL~svk~EL~klr~e~ 194 (582)
......+...|..|...+++|...-+.+.+.++.+
T Consensus 1174 ----~~~e~~~~~lr~~~~~~~~el~~qle~l~~~k~~l 1208 (1930)
T KOG0161|consen 1174 ----LDHEAQIEELRKKHADSLAELQEQLEQLQKDKAKL 1208 (1930)
T ss_pred ----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23456777888888888888888777776555444
No 9
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.56 E-value=0.32 Score=57.38 Aligned_cols=195 Identities=14% Similarity=0.213 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 037857 77 ETQLLLARKEIERTKKLLESSESTRARALGDLERAKRTMLELTTKLKAVKDSKESAIAAAEHVRKQAKQLEEAKSQKNIG 156 (582)
Q Consensus 77 e~qL~~aqeel~k~keql~~aE~~K~qal~ELe~aKr~veeL~~kLe~a~~~~~~A~e~sE~~k~r~~ElEq~~~~~~~~ 156 (582)
.+++..++.++...+....-+..+=.....|| ++.+.+.-|...++.++........ .+.+.-.+..|.... +....
T Consensus 52 ~a~l~~~k~qlr~~q~e~q~~~~ei~~LqeEL-r~q~e~~rL~~~~e~~~~e~e~l~~-ld~~~~q~~rl~~E~-er~~~ 128 (775)
T PF10174_consen 52 AAELSRLKEQLRVTQEENQKAQEEIQALQEEL-RAQRELNRLQQELEKAQYEFESLQE-LDKAQEQFERLQAER-ERLQR 128 (775)
T ss_pred HHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHH-HHhhHHHHHHHHhhhcccccchhhh-hhhHHHHHHHHHHHH-HHHHH
Confidence 34666777777777777676666666777778 7777777777777777644433332 333333333321100 00000
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhH
Q 037857 157 GIAVERKQQVDIAREHYAITASKIDAAKQELNRIRQDFDAALEAKHSALQQAAEAQRLAKVSSERVADLRKQLSAMKEGI 236 (582)
Q Consensus 157 ~~e~a~k~eLe~~r~qya~~~aeL~svk~EL~klr~e~~s~~eak~~A~~~a~ea~~~a~~~~~kveeLt~El~~lke~l 236 (582)
.-.-.+..++.+..+....-..|+..-.+|.+|.-.+.+. .. -+ ++..........+.++-..+..+...+
T Consensus 129 -El~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L~~~----g~---~~-~~~~~~~~~~~~~~~~e~~~~~le~ll 199 (775)
T PF10174_consen 129 -ELERLRKTLEELQLRIETQQQTLDKADEEIEKLQEMLQSK----GL---SA-EAEEEDNEALRRIREAEARIMRLESLL 199 (775)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----CC---cc-cchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 0012333444444444444444444444555444433100 00 00 111122223334555555555555555
Q ss_pred HHHHHHHHHH---------------HH-HHHHHHHhhhHhHHHHHHHHHHHHHHHHHHhhhcc
Q 037857 237 KQIKLAAQEA---------------TD-EQARIVSEKDTLMQSYKAAQEAAENKLNSLKKEYD 283 (582)
Q Consensus 237 ~~~~~a~~eA---------------~e-e~~~i~~e~~~~~~~~~~~l~e~e~~l~~Lk~el~ 283 (582)
+.....+..+ .. -...++..++.....|+..+..++.+|..|+..++
T Consensus 200 e~~e~~~~~~r~~l~~~~~~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~ 262 (775)
T PF10174_consen 200 ERKEKEHMEAREQLHRRLQMERDDAETEALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGE 262 (775)
T ss_pred HHHHHHhhhhhHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4444433222 11 13466788899999999999999999999987653
No 10
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.52 E-value=0.45 Score=57.98 Aligned_cols=29 Identities=17% Similarity=0.363 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 98 ESTRARALGDLERAKRTMLELTTKLKAVK 126 (582)
Q Consensus 98 E~~K~qal~ELe~aKr~veeL~~kLe~a~ 126 (582)
......+...|.++...+.++...+....
T Consensus 169 ~~~~~~~~~~l~~~~~~l~el~~~~~~L~ 197 (1164)
T TIGR02169 169 DRKKEKALEELEEVEENIERLDLIIDEKR 197 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555444
No 11
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.48 E-value=0.57 Score=58.06 Aligned_cols=13 Identities=15% Similarity=0.102 Sum_probs=6.0
Q ss_pred cccccccccccCC
Q 037857 11 NNIIRDQKAKVSS 23 (582)
Q Consensus 11 ~~~~~~~~~~~~~ 23 (582)
-|-|++.+..++.
T Consensus 574 l~~i~~~~~~~~~ 586 (1163)
T COG1196 574 LDRIKPLRSLKSD 586 (1163)
T ss_pred hhhhccccccccc
Confidence 3455554443333
No 12
>PRK02224 chromosome segregation protein; Provisional
Probab=97.47 E-value=0.45 Score=56.82 Aligned_cols=21 Identities=10% Similarity=0.088 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhc
Q 037857 262 QSYKAAQEAAENKLNSLKKEY 282 (582)
Q Consensus 262 ~~~~~~l~e~e~~l~~Lk~el 282 (582)
..|...+...+..+..|+.++
T Consensus 408 ~~~e~~l~~l~~~~~~l~~~~ 428 (880)
T PRK02224 408 GNAEDFLEELREERDELRERE 428 (880)
T ss_pred hhhHHHHHHHHHHHHHHHHHH
Confidence 445555566666666655543
No 13
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.45 E-value=0.27 Score=58.37 Aligned_cols=242 Identities=20% Similarity=0.272 Sum_probs=157.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037857 72 NVLDKETQLLLARKEIERTKKLLESSESTRARALGDLERAKRTMLELTTKLKAVKDSKESAIAAAEHVRKQAKQLEEAKS 151 (582)
Q Consensus 72 ~v~~~e~qL~~aqeel~k~keql~~aE~~K~qal~ELe~aKr~veeL~~kLe~a~~~~~~A~e~sE~~k~r~~ElEq~~~ 151 (582)
.....+.+|...|.+|..+-+++...+. ...--.+|+.+|+-.+. ...+.+.|+..
T Consensus 678 ~l~~~~~~~~~~q~el~~le~eL~~le~-----------~~~kf~~l~~ql~l~~~-------~l~l~~~r~~~------ 733 (1174)
T KOG0933|consen 678 KLKQAQKELRAIQKELEALERELKSLEA-----------QSQKFRDLKQQLELKLH-------ELALLEKRLEQ------ 733 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHH-------HHHHHHHHHhc------
Confidence 3344566777777777777766655444 33444455555554431 12222222111
Q ss_pred hhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hhHHHH
Q 037857 152 QKNIGGIAVERKQQVDIAREHYAITASKIDAAKQELNRIRQDFDAALEAKHSALQQAAEAQRLAKV--------SSERVA 223 (582)
Q Consensus 152 ~~~~~~~e~a~k~eLe~~r~qya~~~aeL~svk~EL~klr~e~~s~~eak~~A~~~a~ea~~~a~~--------~~~kve 223 (582)
..|-..+.++....+++...++++ .++..+++.+++.+...+- -+.++.
T Consensus 734 -------------------~e~~~~~~~~~~~~e~v~e~~~~I----ke~~~~~k~~~~~i~~lE~~~~d~~~~re~rlk 790 (1174)
T KOG0933|consen 734 -------------------NEFHKLLDDLKELLEEVEESEQQI----KEKERALKKCEDKISTLEKKMKDAKANRERRLK 790 (1174)
T ss_pred -------------------ChHhhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHH
Confidence 124445555555555665555543 3445556666666543333 356899
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhh---HhHHHHHHHHHHHHHHHHHHhhhccHHhHHHHHHHHHHhHHH
Q 037857 224 DLRKQLSAMKEGIKQIKLAAQEATDEQARIVSEKD---TLMQSYKAAQEAAENKLNSLKKEYDPQLTENLEIQLAQTTEE 300 (582)
Q Consensus 224 eLt~El~~lke~l~~~~~a~~eA~ee~~~i~~e~~---~~~~~~~~~l~e~e~~l~~Lk~el~~el~~~LE~kL~et~~~ 300 (582)
+|++||..++--++....-....+.+...+..+.+ .....++..+.+.+..+..|+.++ .+|+.++...-.+
T Consensus 791 dl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~-----~~l~~kv~~~~~~ 865 (1174)
T KOG0933|consen 791 DLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSEL-----GNLEAKVDKVEKD 865 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhHHhH
Confidence 99999999999998887777777777777776666 445566777888888888888885 5778888777778
Q ss_pred HHHHHHHHHHHhHhhH--H--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 301 IKVLQKQMKQAHAAEM--D--------SMRAVTAELNKATKSLQEAADEECSLRNLVASLKLELEDVQKECAELK 365 (582)
Q Consensus 301 ie~Lq~el~~~~~~e~--~--------sv~s~~~ELeeaK~~Lek~~eE~~~l~~~v~SLr~ELek~K~el~~Lk 365 (582)
+..++.+++..|..-. + +......+....+..+++...++..+...-...+.+++..-..+.++-
T Consensus 866 ~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi~ 940 (1174)
T KOG0933|consen 866 VKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLKKHEWIG 940 (1174)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhccchh
Confidence 8888888887666422 2 234444566666777778888888888888888888888877777775
No 14
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.42 E-value=0.58 Score=56.85 Aligned_cols=40 Identities=25% Similarity=0.369 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 87 IERTKKLLESSESTRARALGDLERAKRTMLELTTKLKAVK 126 (582)
Q Consensus 87 l~k~keql~~aE~~K~qal~ELe~aKr~veeL~~kLe~a~ 126 (582)
+..|+..+...+.--.++..-+..-.+.+..|..+++.+.
T Consensus 167 ~~~~~~~~~~t~~nL~r~~d~l~el~~ql~~L~~q~~~a~ 206 (1179)
T TIGR02168 167 ISKYKERRKETERKLERTRENLDRLEDILNELERQLKSLE 206 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555444444444444444455555554444443
No 15
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.35 E-value=0.27 Score=51.52 Aligned_cols=102 Identities=21% Similarity=0.236 Sum_probs=60.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 71 ENVLDKETQLLLARKEIERTKKLL-ESSESTRARALGDLERAKRTMLELTTKLKAVKDSKESAIAAAEHVRKQAKQLEEA 149 (582)
Q Consensus 71 e~v~~~e~qL~~aqeel~k~keql-~~aE~~K~qal~ELe~aKr~veeL~~kLe~a~~~~~~A~e~sE~~k~r~~ElEq~ 149 (582)
++|..++.+=..+..+|..++... ......+.....+|...++.|+++...--... ++
T Consensus 18 ekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~-------------------~e-- 76 (312)
T PF00038_consen 18 EKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLE-------------------LE-- 76 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHH-------------------HH--
T ss_pred HHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHh-------------------hh--
Confidence 456566666666666666666663 23333555566666666666666554332221 00
Q ss_pred HhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 150 KSQKNIGGIAVERKQQVDIAREHYAITASKIDAAKQELNRIRQDFDAALEAKH 202 (582)
Q Consensus 150 ~~~~~~~~~e~a~k~eLe~~r~qya~~~aeL~svk~EL~klr~e~~s~~eak~ 202 (582)
+ .-++.+++..+.+|....+....+..+|..++.+++...-.+.
T Consensus 77 ~---------~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~ 120 (312)
T PF00038_consen 77 I---------DNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARV 120 (312)
T ss_dssp H---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred h---------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHh
Confidence 0 2356667777888888888889999999999977776655553
No 16
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.35 E-value=0.69 Score=56.16 Aligned_cols=51 Identities=16% Similarity=0.241 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 76 KETQLLLARKEIERTKKLLESSESTRARALGDLERAKRTMLELTTKLKAVK 126 (582)
Q Consensus 76 ~e~qL~~aqeel~k~keql~~aE~~K~qal~ELe~aKr~veeL~~kLe~a~ 126 (582)
+..++..++..+..+..++...+.....+..++......+..+...+....
T Consensus 675 l~~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 725 (1179)
T TIGR02168 675 RRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELS 725 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666665555555555555555555555555444443
No 17
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.94 E-value=0.57 Score=47.65 Aligned_cols=72 Identities=19% Similarity=0.270 Sum_probs=53.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 74 LDKETQLLLARKEIERTKKLLESSESTRARALGDLERAKRTMLELTTKLKAVKDSKESAIAAAEHVRKQAKQ 145 (582)
Q Consensus 74 ~~~e~qL~~aqeel~k~keql~~aE~~K~qal~ELe~aKr~veeL~~kLe~a~~~~~~A~e~sE~~k~r~~E 145 (582)
..++.+|+.++..+..+...+..++....++..++..-.+.+.-|...|+.+...-..+..-++-+..++.+
T Consensus 4 ~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de 75 (237)
T PF00261_consen 4 QQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADE 75 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 445678888888889999999988888889999998888888888888887775444444444444444433
No 18
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.75 E-value=0.8 Score=46.58 Aligned_cols=49 Identities=20% Similarity=0.277 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 318 SMRAVTAELNKATKSLQEAADEECSLRNLVASLKLELEDVQKECAELKE 366 (582)
Q Consensus 318 sv~s~~~ELeeaK~~Lek~~eE~~~l~~~v~SLr~ELek~K~el~~Lke 366 (582)
.+..++..|.++-...+.+...+..|...++.|..+|...+.....++.
T Consensus 177 ~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~ 225 (237)
T PF00261_consen 177 KIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQE 225 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777888888888888888888888888888888888877776654
No 19
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=96.49 E-value=2.3 Score=48.71 Aligned_cols=249 Identities=16% Similarity=0.242 Sum_probs=147.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 037857 75 DKETQLLLARKEIERTKKLLESSESTRARALGDLERAKRTMLELTTKLKAVKDSKESAIAAAEHVRKQAKQLEEAKSQKN 154 (582)
Q Consensus 75 ~~e~qL~~aqeel~k~keql~~aE~~K~qal~ELe~aKr~veeL~~kLe~a~~~~~~A~e~sE~~k~r~~ElEq~~~~~~ 154 (582)
.+..++..+++.+..+...+...+-.. +...+..-...|+.|...|+.-..++............-+..+....
T Consensus 253 ~i~~~i~~l~~~i~~~~~~l~~l~l~~--~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~---- 326 (569)
T PRK04778 253 DIEKEIQDLKEQIDENLALLEELDLDE--AEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQN---- 326 (569)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhcChHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH----
Confidence 345677777777777777777665543 44567777788888888888877777777766665555555543321
Q ss_pred cCcchHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 037857 155 IGGIAVERKQQVDIAREHYAI---TASKIDAAKQELNRIRQDFDAALEAKHSALQQAAEAQRLAKVSSERVADLRKQLSA 231 (582)
Q Consensus 155 ~~~~e~a~k~eLe~~r~qya~---~~aeL~svk~EL~klr~e~~s~~eak~~A~~~a~ea~~~a~~~~~kveeLt~El~~ 231 (582)
.....+++.++..|.. .+........+|..+...|......-..-...-.+.........+.++.+..+...
T Consensus 327 -----~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~e 401 (569)
T PRK04778 327 -----KELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEK 401 (569)
T ss_pred -----HHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578888899888874 45556666778888888887655443332222344444555566666666666666
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHhhhccHHhHHHHHHHHHHhHHHHHHHHHHHHHH
Q 037857 232 MKEGIKQIKLAAQEATDEQARIVSEKDTLMQSYKAAQEAAENKLNSLKKEYDPQLTENLEIQLAQTTEEIKVLQKQMKQA 311 (582)
Q Consensus 232 lke~l~~~~~a~~eA~ee~~~i~~e~~~~~~~~~~~l~e~e~~l~~Lk~el~~el~~~LE~kL~et~~~ie~Lq~el~~~ 311 (582)
+++.+...+....+|.... ..|...+......|...+ + |.+-.+.-.-+..+...|..|..+|+.
T Consensus 402 i~e~l~~Lrk~E~eAr~kL-----------~~~~~~L~~ikr~l~k~~--l-pgip~~y~~~~~~~~~~i~~l~~~L~~- 466 (569)
T PRK04778 402 LSEMLQGLRKDELEAREKL-----------ERYRNKLHEIKRYLEKSN--L-PGLPEDYLEMFFEVSDEIEALAEELEE- 466 (569)
T ss_pred HHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHcC--C-CCCcHHHHHHHHHHHHHHHHHHHHhcc-
Confidence 6666666555554444332 334444444443333322 1 333444444445555566666666665
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 312 HAAEMDSMRAVTAELNKATKSLQEAADEECSLRNLVASLKL 352 (582)
Q Consensus 312 ~~~e~~sv~s~~~ELeeaK~~Lek~~eE~~~l~~~v~SLr~ 352 (582)
..-++ ..+..+++++...++.+.+...-+..++..|..
T Consensus 467 g~VNm---~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~lE~ 504 (569)
T PRK04778 467 KPINM---EAVNRLLEEATEDVETLEEETEELVENATLTEQ 504 (569)
T ss_pred CCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333 234555666666666666665555555555443
No 20
>PRK02224 chromosome segregation protein; Provisional
Probab=96.43 E-value=3.2 Score=49.68 Aligned_cols=33 Identities=15% Similarity=0.233 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 103 RALGDLERAKRTMLELTTKLKAVKDSKESAIAA 135 (582)
Q Consensus 103 qal~ELe~aKr~veeL~~kLe~a~~~~~~A~e~ 135 (582)
.+...|...+..+.++...+.............
T Consensus 203 ~l~~~l~~~~~~l~el~~~i~~~~~~~~~l~~~ 235 (880)
T PRK02224 203 DLHERLNGLESELAELDEEIERYEEQREQARET 235 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555444443333333
No 21
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=96.30 E-value=5.5 Score=50.93 Aligned_cols=201 Identities=15% Similarity=0.236 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhHHHHHH
Q 037857 162 RKQQVDIAREHYAITASKIDAAKQELNRIRQDFDAALEAKHSALQQAAEAQRLAKVSSERVADLRKQLSAMKEGIKQIKL 241 (582)
Q Consensus 162 ~k~eLe~~r~qya~~~aeL~svk~EL~klr~e~~s~~eak~~A~~~a~ea~~~a~~~~~kveeLt~El~~lke~l~~~~~ 241 (582)
...++.-++++|....-.++..|.|+..|+..+..+-.--....+.+..+..-.-....+++-|..||..+|..-.+...
T Consensus 680 ~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~ 759 (1822)
T KOG4674|consen 680 LKNELNLAKEKLENLEKNLELTKEEVETLEERNKNLQSTISKQEQTVHTLSQELLSANEKLEKLEAELSNLKQEKLLLKE 759 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556667777777777777777766655544433333334444444444455566677777777777776666544
Q ss_pred HHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHhhhccHHhHHHHHHHHHHhHHHHHHHHHHHHHHhHhhHHHHHH
Q 037857 242 AAQEATDEQARIVSEKDTLMQSYKAAQEAAENKLNSLKKEYDPQLTENLEIQLAQTTEEIKVLQKQMKQAHAAEMDSMRA 321 (582)
Q Consensus 242 a~~eA~ee~~~i~~e~~~~~~~~~~~l~e~e~~l~~Lk~el~~el~~~LE~kL~et~~~ie~Lq~el~~~~~~e~~sv~s 321 (582)
+..-...+...+..++. +....+...+--...+...+ .+.-..++.++.+..-.+..|+..+.....--..--..
T Consensus 760 t~~rL~~e~~~l~~e~~----~L~~~l~~lQt~~~~~e~s~-~~~k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~ 834 (1822)
T KOG4674|consen 760 TEERLSQELEKLSAEQE----SLQLLLDNLQTQKNELEESE-MATKDKCESRIKELERELQKLKKKLQEKSSDLRELTNS 834 (1822)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44333333333332222 12222222222222222211 23444555555554444444444433221111111223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 322 VTAELNKATKSLQEAADEECSLRNLVASLKLELEDVQKECAELKEK 367 (582)
Q Consensus 322 ~~~ELeeaK~~Lek~~eE~~~l~~~v~SLr~ELek~K~el~~Lke~ 367 (582)
...+|..+...|+....+...+...+.+++..+......+..|...
T Consensus 835 ~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~ 880 (1822)
T KOG4674|consen 835 LEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKR 880 (1822)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555555555555443
No 22
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.25 E-value=4.1 Score=48.99 Aligned_cols=53 Identities=17% Similarity=0.127 Sum_probs=29.9
Q ss_pred CccccHHhhHHhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 037857 476 NITISKEEFDSLNKAVEESVAVAEKKLAEAEAQLLVINARKNEADKKLEANLTDVE 531 (582)
Q Consensus 476 ~Itis~eEye~L~~ka~eaEe~a~kkvaaA~aqve~akase~e~l~kLe~~~~eie 531 (582)
+..-..++-..|..+...-+...++++-. -++-+-.-...+..|.+.+.+.-.
T Consensus 959 ~p~~are~l~~Lq~k~~~l~k~vn~~~m~---mle~~E~~~~~lk~k~~~Ie~Dk~ 1011 (1174)
T KOG0933|consen 959 DPHEAREELKKLQEKKEKLEKTVNPKNMD---MLERAEEKEAALKTKKEIIEKDKS 1011 (1174)
T ss_pred CHhHHHHHHHHhhHHHHHHHhhcCHHHHH---HHHHHHHHHHHHHHHHHHHHhhHH
Confidence 34445667777777777777777766543 344444444555555555444433
No 23
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=96.22 E-value=0.0017 Score=77.27 Aligned_cols=348 Identities=14% Similarity=0.224 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhhc
Q 037857 77 ETQLLLARKEIERTKKLLESSESTRARALGDLERAKRTMLELTTKLKAVKDSKESAIAAAEHVRK--QAKQLEEAKSQKN 154 (582)
Q Consensus 77 e~qL~~aqeel~k~keql~~aE~~K~qal~ELe~aKr~veeL~~kLe~a~~~~~~A~e~sE~~k~--r~~ElEq~~~~~~ 154 (582)
+..|.-+++.+..++......+..|.++..|++-++-.++......... .+++-.=|..++.. ++.++.... +.
T Consensus 327 ~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~L--eKKqr~fDk~l~e~k~~~~~~~~e~--d~ 402 (859)
T PF01576_consen 327 ERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAEL--EKKQRKFDKQLAEWKAKVEELQAER--DA 402 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHHHHHHH--HH
Confidence 4466777788888888888888888888887776665555544322111 11222222222222 221211100 00
Q ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Q 037857 155 IGGIAVERKQQVDIAREHYAITASKIDAAKQELNRIRQDFDAALEAKHSALQQAAEAQRLAKVSSERVADLRKQLSAMKE 234 (582)
Q Consensus 155 ~~~~e~a~k~eLe~~r~qya~~~aeL~svk~EL~klr~e~~s~~eak~~A~~~a~ea~~~a~~~~~kveeLt~El~~lke 234 (582)
+...-..+..++-..+..|......+..+..+...|+.++..+.+..+.+.+...+....-..-+..+++|...|..+-+
T Consensus 403 ~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E~ 482 (859)
T PF01576_consen 403 AQREARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEAED 482 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00011234455555566666666666666666666666666666655555554444444444444444555555544444
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHhhhccHHhHHHHHHHHHHhH--------------HH
Q 037857 235 GIKQIKLAAQEATDEQARIVSEKDTLMQSYKAAQEAAENKLNSLKKEYDPQLTENLEIQLAQTT--------------EE 300 (582)
Q Consensus 235 ~l~~~~~a~~eA~ee~~~i~~e~~~~~~~~~~~l~e~e~~l~~Lk~el~~el~~~LE~kL~et~--------------~~ 300 (582)
.+.....+ ...+..+-...+..|...+.+-+.+++.++..+- --...|++.|..-. .+
T Consensus 483 ~l~~~E~~-------~lRl~~el~~~r~e~er~l~eKeeE~E~~Rr~~q-r~l~~le~~LE~E~k~r~~~~r~kkKLE~~ 554 (859)
T PF01576_consen 483 ALEAEEQK-------KLRLQVELQQLRQEIERELQEKEEEFEETRRNHQ-RQLESLEAELEEERKERAEALREKKKLESD 554 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443322 2233333334444555555555555554443331 12233333332111 01
Q ss_pred HHHHHHHHHHHhHhhH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 301 IKVLQKQMKQAHAAEM----------DSMRAVTAELNKATKSLQEAADEECSLRNLVASLKLELEDVQKECAELKEKEAE 370 (582)
Q Consensus 301 ie~Lq~el~~~~~~e~----------~sv~s~~~ELeeaK~~Lek~~eE~~~l~~~v~SLr~ELek~K~el~~Lke~E~~ 370 (582)
|..|..++........ ..+..+..+|+++....+.+......+..-+..|..||+.....+..+...-..
T Consensus 555 l~eLe~~ld~~n~~~~e~~k~~kk~q~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~~l~~elee~~~~~~~a~r~rk~ 634 (859)
T PF01576_consen 555 LNELEIQLDHANRANEEAQKQLKKLQAQLKDLQRELEEAQRAREELREQLAVSERRLRALQAELEELREALEQAERARKQ 634 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2223333322211111 124555667777777777788877778888888888888888877776443332
Q ss_pred H-HHHh--HHhHHHHhhhhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 037857 371 M-EVIK--GALMESIAKESAVECEDSLNEHKLELEKLSAETETAMKEEAVIKEEAEHLKQAAEAARMLAK 437 (582)
Q Consensus 371 a-~~~~--~~eL~~~kse~a~~~~e~~~~l~~~lqql~~Eae~ak~eae~~~~E~~k~k~E~e~~ka~~~ 437 (582)
+ .... ...++...+.. .........|-..+..|..+.+....++..+-...+++...+......+.
T Consensus 635 aE~el~e~~~~~~~l~~~~-~~l~~~kr~le~~i~~l~~eleE~~~~~~~~~ek~kka~~~~~~l~~eL~ 703 (859)
T PF01576_consen 635 AESELDELQERLNELTSQN-SSLSEEKRKLEAEIQQLEEELEEEQSEAEAAEEKAKKAQAQAAQLAEELR 703 (859)
T ss_dssp ----------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 2 1111 12121111110 00001112344555666666666666666666666666665555444443
No 24
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=96.11 E-value=0.0014 Score=77.89 Aligned_cols=445 Identities=19% Similarity=0.259 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 037857 74 LDKETQLLLARKEIERTKKLLESSESTRARALGDLERAKRTMLELTTKLKAVKDSKESAIAAAEHVRKQAKQLEEAKSQK 153 (582)
Q Consensus 74 ~~~e~qL~~aqeel~k~keql~~aE~~K~qal~ELe~aKr~veeL~~kLe~a~~~~~~A~e~sE~~k~r~~ElEq~~~~~ 153 (582)
.+++.++.-++++|.--+.-..-++..|..+..||+.-+..+++....- .++ .......+.|+.++| ..||...
T Consensus 42 kelq~~i~el~eeLe~Er~~R~kaek~r~dL~~ELe~l~~~Lee~~~~t-~aq-~E~~kkrE~El~~Lr-r~LEe~~--- 115 (859)
T PF01576_consen 42 KELQARIEELEEELESERQARAKAEKQRRDLSEELEELKERLEEAGGAT-QAQ-IELNKKREAELAKLR-RDLEEAN--- 115 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcH-Hhh-HHHHHHHHHHHHHHH-HHHHHHH---
Confidence 3556677777777777777667777777777777766555554433221 111 112234446666665 3443321
Q ss_pred ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 037857 154 NIGGIAVERKQQVDIAREHYAITASKIDAAKQELNRIRQDFDAALEAKHSALQQAAEAQRLAKVSSERVADLRKQLSAMK 233 (582)
Q Consensus 154 ~~~~~e~a~k~eLe~~r~qya~~~aeL~svk~EL~klr~e~~s~~eak~~A~~~a~ea~~~a~~~~~kveeLt~El~~lk 233 (582)
......+...|..|...+++|..--+.|.+.+.-+. +.-..|..|+..+.
T Consensus 116 ------~~~e~~~~~lrkkh~~~~~eL~eqle~lqk~k~~lE------------------------K~k~~l~~e~~dL~ 165 (859)
T PF01576_consen 116 ------LQHEATLAELRKKHQDAVAELNEQLEQLQKQKAKLE------------------------KEKSQLEAELDDLQ 165 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHhHHHHHH
Confidence 123345667778888888887766555555543321 11233455566666
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHhhhccHHhHHHHHHHHHHhHHHHHHHHHHHHHHhH
Q 037857 234 EGIKQIKLAAQEATDEQARIVSEKDTLMQSYKAAQEAAENKLNSLKKEYDPQLTENLEIQLAQTTEEIKVLQKQMKQAHA 313 (582)
Q Consensus 234 e~l~~~~~a~~eA~ee~~~i~~e~~~~~~~~~~~l~e~e~~l~~Lk~el~~el~~~LE~kL~et~~~ie~Lq~el~~~~~ 313 (582)
..++....+...++.....+ +.....|...+.+.+..+.+|.... .-|++++.+.+..++.+..++..+.
T Consensus 166 ~~l~~~~k~k~~~Ek~~K~l----E~qL~El~~klee~er~~~el~~~k-----~kL~~E~~eL~~qLee~e~~~~~l~- 235 (859)
T PF01576_consen 166 AQLDSLQKAKQEAEKKRKQL----EAQLNELQAKLEESERQRNELTEQK-----AKLQSENSELTRQLEEAESQLSQLQ- 235 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhHHhhH----HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 66666655555554433221 2222334444444444444433321 2223233222222222222211111
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHh-HHhHHHHhhhh---h
Q 037857 314 AEMDSMRAVTAELNKATKSLQEAADEECSLRNLVASLKLELEDVQKECAELKEKEAEM--EVIK-GALMESIAKES---A 387 (582)
Q Consensus 314 ~e~~sv~s~~~ELeeaK~~Lek~~eE~~~l~~~v~SLr~ELek~K~el~~Lke~E~~a--~~~~-~~eL~~~kse~---a 387 (582)
....++..+|++++..|+.-.-.-..|...+..|..+++..+..+..-.+.-... .... +.+|...+... +
T Consensus 236 ---r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~ 312 (859)
T PF01576_consen 236 ---REKSSLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEA 312 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---HHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 1234566677777777777666666677777777777766666554321111111 1111 44444444331 0
Q ss_pred -H--hhhh--------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 037857 388 -V--ECED--------SLNEHKLELEKLSAETETAMKEEAVIKEEAEHLKQAAEAARMLAKEAEKNLQLALSEVEQAKAS 456 (582)
Q Consensus 388 -~--~~~e--------~~~~l~~~lqql~~Eae~ak~eae~~~~E~~k~k~E~e~~ka~~~t~E~rL~aa~kE~EAakas 456 (582)
. ..-+ .+..+...++.+..-.....+....+..++.-+..+++...+.....+.+-...-+.+...+.-
T Consensus 313 ~~~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~ 392 (859)
T PF01576_consen 313 EQRTEELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAK 392 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 0 0001 1122333333333333344444444555555555566666665555555544444444443321
Q ss_pred HHHHHHHHhhhhcC-CCCCCCccccHHhhHHhhHHHHHHHH---HHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 037857 457 ERKALGELNVLSIK-PDSASNITISKEEFDSLNKAVEESVA---VAEKKLAEAEAQLLVINARKNEADKKLEANLTDVEE 532 (582)
Q Consensus 457 Ea~Alaeik~l~e~-s~~~~~Itis~eEye~L~~ka~eaEe---~a~kkvaaA~aqve~akase~e~l~kLe~~~~eie~ 532 (582)
-.....+...+... ..-.+.|.--.-+|+.+.-.....+. ...--+.....++..+..+=.++-+..-.+..++.+
T Consensus 393 ~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~E 472 (859)
T PF01576_consen 393 VEELQAERDAAQREARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEE 472 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHH
Confidence 11111111111110 01122232233333333333322111 111122333444554444444444445555556777
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHH
Q 037857 533 IKNATEAALKSAETATAAQSMVEAELRRWRQQEEQ 567 (582)
Q Consensus 533 ~k~ale~Al~raE~A~~aK~avE~ELRrwR~e~~q 567 (582)
.+..++++-...+.++.+++-++-+|-..|.+++.
T Consensus 473 l~~~leE~E~~l~~~E~~~lRl~~el~~~r~e~er 507 (859)
T PF01576_consen 473 LQEQLEEAEDALEAEEQKKLRLQVELQQLRQEIER 507 (859)
T ss_dssp -----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777788888999999999988888764
No 25
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=96.10 E-value=3.5 Score=46.89 Aligned_cols=273 Identities=16% Similarity=0.190 Sum_probs=146.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhHHHHHHH
Q 037857 163 KQQVDIAREHYAITASKIDAAKQELNRIRQDFDAALEAKHSALQQAAEAQRLAKVSSERVADLRKQLSAMKEGIKQIKLA 242 (582)
Q Consensus 163 k~eLe~~r~qya~~~aeL~svk~EL~klr~e~~s~~eak~~A~~~a~ea~~~a~~~~~kveeLt~El~~lke~l~~~~~a 242 (582)
|.+|-....|.+.-+--......|=.+|..++..+-..-..-. ..--.--..||..+.-.++.+..-
T Consensus 41 K~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~t-------------s~ik~~ye~El~~ar~~l~e~~~~ 107 (546)
T KOG0977|consen 41 KKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRET-------------SGIKAKYEAELATARKLLDETARE 107 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-------------cchhHHhhhhHHHHHHHHHHHHHH
Confidence 3444444455555555555556666666666654433211100 001111223444444444444444
Q ss_pred HHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHhhhccHHhHHHHHHHHHHhHHHHHHHHHHHHHHhHhhHHHHHHH
Q 037857 243 AQEATDEQARIVSEKDTLMQSYKAAQEAAENKLNSLKKEYDPQLTENLEIQLAQTTEEIKVLQKQMKQAHAAEMDSMRAV 322 (582)
Q Consensus 243 ~~eA~ee~~~i~~e~~~~~~~~~~~l~e~e~~l~~Lk~el~~el~~~LE~kL~et~~~ie~Lq~el~~~~~~e~~sv~s~ 322 (582)
+..++.++.++..+-+.....|.........-=++++..+ ....++++++.-+...+..|..++...+. ....+
T Consensus 108 ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~--~~l~~leAe~~~~krr~~~le~e~~~Lk~----en~rl 181 (546)
T KOG0977|consen 108 RAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYL--SRLSELEAEINTLKRRIKALEDELKRLKA----ENSRL 181 (546)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHh--hhhhhhhhHHHHHHHHHHHHHHHHHHHHH----Hhhhh
Confidence 4444444444444444333333333333222222333333 24666666666666666666666655443 23456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH-HHh----HHhHHHHhhhh-------
Q 037857 323 TAELNKATKSLQEAADEECSLRNLVASLKLELEDVQ----KECAELKEKEAEME-VIK----GALMESIAKES------- 386 (582)
Q Consensus 323 ~~ELeeaK~~Lek~~eE~~~l~~~v~SLr~ELek~K----~el~~Lke~E~~a~-~~~----~~eL~~~kse~------- 386 (582)
..+|..+++.|+.-.---..+.+.+.+|.-+|.-.+ .++..++.+-.-.. ..+ +.+|..+-.+.
T Consensus 182 ~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~ 261 (546)
T KOG0977|consen 182 REELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFKNELALAIREIRAQYEAI 261 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 667777777777777666777778888888887776 33333333222221 111 55555544441
Q ss_pred hHhhhhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 037857 387 AVECEDSLNEH-KLELEKLSAETETAMKEEAVIKEEAEHLKQAAEAARMLAKEAEKNLQLALSEVEQAK 454 (582)
Q Consensus 387 a~~~~e~~~~l-~~~lqql~~Eae~ak~eae~~~~E~~k~k~E~e~~ka~~~t~E~rL~aa~kE~EAak 454 (582)
....++.+... ...|+.+..-++.+......+++|+..++..+...++.+...|.+-.+..+.++-.+
T Consensus 262 ~~~nR~diE~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~ 330 (546)
T KOG0977|consen 262 SRQNRKDIESWYKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLE 330 (546)
T ss_pred HHHhHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHH
Confidence 12222222222 345566666666777777778888888888888888888888888777666665443
No 26
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.07 E-value=3.6 Score=46.79 Aligned_cols=162 Identities=19% Similarity=0.238 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH
Q 037857 76 KETQLLLARKEIE-------RTKKLLESSESTRARALGDLERAKRTMLELTTKLKAVKDSKESAIAAA-------EHVRK 141 (582)
Q Consensus 76 ~e~qL~~aqeel~-------k~keql~~aE~~K~qal~ELe~aKr~veeL~~kLe~a~~~~~~A~e~s-------E~~k~ 141 (582)
+|.+|...+++.. .++.+.......-.++..+|...+...+.|..+.+...........-. .-...
T Consensus 141 lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ 220 (546)
T PF07888_consen 141 LQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQ 220 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555444433 334444444444556667777777777777666665554433333222 22334
Q ss_pred HHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH---HHH-------HHHHHHHHHHHHHHH
Q 037857 142 QAKQLEEAKSQKNIGGIAVERKQQVDIAREHYAITASKIDAAKQELN-RIRQ---DFD-------AALEAKHSALQQAAE 210 (582)
Q Consensus 142 r~~ElEq~~~~~~~~~~e~a~k~eLe~~r~qya~~~aeL~svk~EL~-klr~---e~~-------s~~eak~~A~~~a~e 210 (582)
|+.+|+..+..-- --..+.+....++.....++...+.+|. +|+. ++. ..-..-.....+...
T Consensus 221 ri~~LEedi~~l~------qk~~E~e~~~~~lk~~~~elEq~~~eLk~rLk~~~~~~~~~~~~~~~~~~e~e~LkeqLr~ 294 (546)
T PF07888_consen 221 RIRELEEDIKTLT------QKEKEQEKELDKLKELKAELEQLEAELKQRLKETVVQLKQEETQAQQLQQENEALKEQLRS 294 (546)
T ss_pred HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence 4555555433100 0012223333333333444433332222 1111 110 000011122223334
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHhhHHHHHHHH
Q 037857 211 AQRLAKVSSERVADLRKQLSAMKEGIKQIKLAA 243 (582)
Q Consensus 211 a~~~a~~~~~kveeLt~El~~lke~l~~~~~a~ 243 (582)
+..........+..|..||..+...-+.+.+--
T Consensus 295 ~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~aeL 327 (546)
T PF07888_consen 295 AQEQLQASQQEAELLRKELSDAVNVRDRTMAEL 327 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455556778888888777776655543333
No 27
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.05 E-value=5 Score=48.17 Aligned_cols=217 Identities=13% Similarity=0.242 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 103 RALGDLERAKRTMLELTTKLKAVKDSKESAIAAAEHVRKQAKQLEEAKSQKNIGGIAVERKQQVDIAREHYAITASKIDA 182 (582)
Q Consensus 103 qal~ELe~aKr~veeL~~kLe~a~~~~~~A~e~sE~~k~r~~ElEq~~~~~~~~~~e~a~k~eLe~~r~qya~~~aeL~s 182 (582)
.++..|+.+++.|++...++.......++..-+....+..... .+.++..++.+...+-..|.-
T Consensus 682 ~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~----------------l~~e~~~~k~e~~~v~~s~~~ 745 (1200)
T KOG0964|consen 682 ELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEK----------------LKRELNTIKGEKSRVQESLEP 745 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH----------------HHHHHHHhhhHHHHHHHHhhH
Confidence 3455677788889999888888776555555444444333322 333344444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhHh
Q 037857 183 AKQELNRIRQDFDAALEAKHSALQQ--AAEAQRLAKVSSERVADLRKQLSAMKEGIKQIKLAAQEATDEQARIVSEKDTL 260 (582)
Q Consensus 183 vk~EL~klr~e~~s~~eak~~A~~~--a~ea~~~a~~~~~kveeLt~El~~lke~l~~~~~a~~eA~ee~~~i~~e~~~~ 260 (582)
-..+|..++..+..+.+...-=.+. .+-...-+....+++.-|+.+|..+...+.......
T Consensus 746 k~~~Le~i~~~l~~~~~~~~~~e~el~sel~sqLt~ee~e~l~kLn~eI~~l~~kl~~~~~er----------------- 808 (1200)
T KOG0964|consen 746 KGKELEEIKTSLHKLESQSNYFESELGSELFSQLTPEELERLSKLNKEINKLSVKLRALREER----------------- 808 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhcCHHHHHHHHHhhHHHHHHHHHHHHHHHHH-----------------
Confidence 4444444444443333222111100 011111233355666777777766665554432111
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccHHhHHHHHHHHHHhHHHHHHHHHHHHHHhHhhH-HHHHHHHHHHHHHHHHHHHHHHH
Q 037857 261 MQSYKAAQEAAENKLNSLKKEYDPQLTENLEIQLAQTTEEIKVLQKQMKQAHAAEM-DSMRAVTAELNKATKSLQEAADE 339 (582)
Q Consensus 261 ~~~~~~~l~e~e~~l~~Lk~el~~el~~~LE~kL~et~~~ie~Lq~el~~~~~~e~-~sv~s~~~ELeeaK~~Lek~~eE 339 (582)
..|...+..+...+...|.-.+ ..|+.++.....++. ..+...+.+|+.....++.+.-+
T Consensus 809 ------------~~~~~rk~~le~~l~~kL~~r~-------~~l~~ei~~~~d~~~~~el~~~~~el~~~~~~~e~~~~e 869 (1200)
T KOG0964|consen 809 ------------IDIETRKTALEANLNTKLYKRV-------NELEQEIGDLNDSSRRSELELEKSELESEEKRVEAAILE 869 (1200)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHhhh-------hHHHHHhhhcccccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 1122233333222222332222 344555555555553 34667778888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 340 ECSLRNLVASLKLELEDVQKECAELKEKEAEM 371 (582)
Q Consensus 340 ~~~l~~~v~SLr~ELek~K~el~~Lke~E~~a 371 (582)
...+...++++..+...-+..+..++..+..-
T Consensus 870 l~~l~~~i~~~~a~~~~~~~~lE~~~~lek~~ 901 (1200)
T KOG0964|consen 870 LKTLQDSIDKKKAEIKEIKKELEKAKNLEKEK 901 (1200)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888877777777776665443
No 28
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=95.98 E-value=4 Score=46.48 Aligned_cols=44 Identities=14% Similarity=0.297 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 161 ERKQQVDIAREHYAITASKIDAAKQELNRIRQDFDAALEAKHSA 204 (582)
Q Consensus 161 a~k~eLe~~r~qya~~~aeL~svk~EL~klr~e~~s~~eak~~A 204 (582)
.++.+....+.+....-++|...+++..+|+..+..+.......
T Consensus 161 ~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l 204 (546)
T PF07888_consen 161 QLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEEL 204 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777777777778888888888888887776665544333
No 29
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.97 E-value=5.9 Score=48.39 Aligned_cols=73 Identities=7% Similarity=0.145 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhHHHH
Q 037857 160 VERKQQVDIAREHYAITASKIDAAKQELNRIRQDFDAALEAKHSALQQAAEAQRLAKVSSERVADLRKQLSAMKEGIKQI 239 (582)
Q Consensus 160 ~a~k~eLe~~r~qya~~~aeL~svk~EL~klr~e~~s~~eak~~A~~~a~ea~~~a~~~~~kveeLt~El~~lke~l~~~ 239 (582)
..|+.++-..-.++...=..|..+.+-+.++..++......+..+. .+...+...+..+..||..+++.++..
T Consensus 387 ~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e-------~~pe~~~~~i~~~~~ei~~L~~~~~~~ 459 (1293)
T KOG0996|consen 387 ESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELE-------KAPEKARIEIQKCQTEIEQLEELLEKE 459 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-------hCchhhHhHHHHHHHHHHHHHHHHHHH
Confidence 4577777777777777777777777777777777766555554444 334444445555555555555554443
No 30
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=95.97 E-value=2.6 Score=44.14 Aligned_cols=51 Identities=25% Similarity=0.386 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 318 SMRAVTAELNKATKSLQEAADEECSLRNLVASLKLELEDVQKECAELKEKE 368 (582)
Q Consensus 318 sv~s~~~ELeeaK~~Lek~~eE~~~l~~~v~SLr~ELek~K~el~~Lke~E 368 (582)
.+..+..........+..+++|+..++..+.+|+.+|...+.....|...-
T Consensus 196 k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l 246 (312)
T PF00038_consen 196 KLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQL 246 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhH
Confidence 355566666677777888888888888888888888888877777776644
No 31
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.76 E-value=8.5 Score=48.55 Aligned_cols=31 Identities=6% Similarity=0.102 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 172 HYAITASKIDAAKQELNRIRQDFDAALEAKH 202 (582)
Q Consensus 172 qya~~~aeL~svk~EL~klr~e~~s~~eak~ 202 (582)
.++...+.|+.-+.||..-...+......-.
T Consensus 529 ~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~ 559 (1311)
T TIGR00606 529 HHTTTRTQMEMLTKDKMDKDEQIRKIKSRHS 559 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666677776666666666655555443
No 32
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=95.73 E-value=7.1 Score=47.43 Aligned_cols=181 Identities=15% Similarity=0.280 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhHHHHHHHH
Q 037857 164 QQVDIAREHYAITASKIDAAKQELNRIRQDFDAALEAKHSALQQAAEAQRLAKVSSERVADLRKQLSAMKEGIKQIKLAA 243 (582)
Q Consensus 164 ~eLe~~r~qya~~~aeL~svk~EL~klr~e~~s~~eak~~A~~~a~ea~~~a~~~~~kveeLt~El~~lke~l~~~~~a~ 243 (582)
.+|+.+..-|...++-|+.+++.|.....++...--. ..+. .-.-.+...++++..-+..++..+.++-..+
T Consensus 207 T~L~qi~~~~~~~~~~~~~~~~~i~~~~e~i~~l~k~-------i~e~-~e~~~~~~~~e~~~~~l~~Lk~k~~W~~V~~ 278 (1074)
T KOG0250|consen 207 TQLEQITESYSEIMESLDHAKELIDLKEEEIKNLKKK-------IKEE-EEKLDNLEQLEDLKENLEQLKAKMAWAWVNE 278 (1074)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-------HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888889999999999999888776666543211 1111 1122344556677777777777777776666
Q ss_pred HHHHH-HHHHHHHhhhHhHHHHHHHHHHHHHHHHHHhhhccHHhHHHHHHHHHHhHHHHHHHHHHHHHHhHhhHHHHHHH
Q 037857 244 QEATD-EQARIVSEKDTLMQSYKAAQEAAENKLNSLKKEYDPQLTENLEIQLAQTTEEIKVLQKQMKQAHAAEMDSMRAV 322 (582)
Q Consensus 244 ~eA~e-e~~~i~~e~~~~~~~~~~~l~e~e~~l~~Lk~el~~el~~~LE~kL~et~~~ie~Lq~el~~~~~~e~~sv~s~ 322 (582)
.+-+= .+.+-+.-.......|+..++....++..+++.+ .+.|+++.+.......-..+++.++ ..|...
T Consensus 279 ~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~-----teiea~i~~~~~e~~~~d~Ei~~~r----~~~~~~ 349 (1074)
T KOG0250|consen 279 VERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKL-----TEIEAKIGELKDEVDAQDEEIEEAR----KDLDDL 349 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----hHHHHHHHHHHHhhhhhhHHHHHHH----HHHHHH
Confidence 43221 1112222233444566666666666666666654 3455555554444444333333333 233444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 323 TAELNKATKSLQEAADEECSLRNLVASLKLELEDVQKEC 361 (582)
Q Consensus 323 ~~ELeeaK~~Lek~~eE~~~l~~~v~SLr~ELek~K~el 361 (582)
..+..+++..+..+......++..++-|+..+...+.++
T Consensus 350 ~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~ 388 (1074)
T KOG0250|consen 350 RREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQT 388 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444433
No 33
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=95.66 E-value=7.6 Score=47.21 Aligned_cols=432 Identities=15% Similarity=0.219 Sum_probs=241.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 037857 77 ETQLLLARKEIERTKKLLESSESTRARALGDLERAKRTMLELTTKLKAVKDSKESAIAAAEHVRKQAKQLEEAKSQKNIG 156 (582)
Q Consensus 77 e~qL~~aqeel~k~keql~~aE~~K~qal~ELe~aKr~veeL~~kLe~a~~~~~~A~e~sE~~k~r~~ElEq~~~~~~~~ 156 (582)
-|+|..+.+.+..+-..+..+-.-=.....++..-++.+.++..+|. .+.+.+....+...|...
T Consensus 206 aT~L~qi~~~~~~~~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~--------~~~~~e~~~~~l~~Lk~k------- 270 (1074)
T KOG0250|consen 206 ATQLEQITESYSEIMESLDHAKELIDLKEEEIKNLKKKIKEEEEKLD--------NLEQLEDLKENLEQLKAK------- 270 (1074)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH-------
Confidence 56888888888777777766655555555555555555555555544 233444444444444331
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhH
Q 037857 157 GIAVERKQQVDIAREHYAITASKIDAAKQELNRIRQDFDAALEAKHSALQQAAEAQRLAKVSSERVADLRKQLSAMKEGI 236 (582)
Q Consensus 157 ~~e~a~k~eLe~~r~qya~~~aeL~svk~EL~klr~e~~s~~eak~~A~~~a~ea~~~a~~~~~kveeLt~El~~lke~l 236 (582)
-+|.. -..+..+|.-...++.+.+...+.+-+.-........++-......+.++..+..|..+.++.+
T Consensus 271 ---~~W~~--------V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei 339 (1074)
T KOG0250|consen 271 ---MAWAW--------VNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEI 339 (1074)
T ss_pred ---HHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHH
Confidence 34543 3334445566666666666666665555566677777777788888999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh---HhHHHHHHHHHHHHHHHHHHhhhccHHhHHHHHHHHHHhHHHHHHHHHHHHHHhH
Q 037857 237 KQIKLAAQEATDEQARIVSEKD---TLMQSYKAAQEAAENKLNSLKKEYDPQLTENLEIQLAQTTEEIKVLQKQMKQAHA 313 (582)
Q Consensus 237 ~~~~~a~~eA~ee~~~i~~e~~---~~~~~~~~~l~e~e~~l~~Lk~el~~el~~~LE~kL~et~~~ie~Lq~el~~~~~ 313 (582)
+.++..-.....+...+..+.. ......+..+...++.|..++.++ ...+..++.+.-..+..|+.+.+....
T Consensus 340 ~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~----~~~~~~~~~e~e~k~~~L~~evek~e~ 415 (1074)
T KOG0250|consen 340 EEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQT----NNELGSELEERENKLEQLKKEVEKLEE 415 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 8886655433332221111111 111222223333344444444333 233333333333333444444433321
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHh-HHhHHHHhhh-
Q 037857 314 AEMDSMRAVTAELNKATKSLQEAADEECSLRNLVASLKLELEDVQKECAELKEKEAEM------EVIK-GALMESIAKE- 385 (582)
Q Consensus 314 ~e~~sv~s~~~ELeeaK~~Lek~~eE~~~l~~~v~SLr~ELek~K~el~~Lke~E~~a------~~~~-~~eL~~~kse- 385 (582)
-+.++..++++++..+....++...+......|+.-+.+-...+..|+.-.... .+.. -..+.+..+.
T Consensus 416 ----~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~~k~dkvs~FG~~m~~lL~~I~r~~~~f 491 (1074)
T KOG0250|consen 416 ----QINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKKTKTDKVSAFGPNMPQLLRAIERRKRRF 491 (1074)
T ss_pred ----HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcchhhHHHHHHHHHHHhcC
Confidence 345566677777777777777776676777777777777666666665433221 0000 0011111000
Q ss_pred ----------------------------------------------------------h--h--------------Hhh-
Q 037857 386 ----------------------------------------------------------S--A--------------VEC- 390 (582)
Q Consensus 386 ----------------------------------------------------------~--a--------------~~~- 390 (582)
+ + ..+
T Consensus 492 ~~~P~GPlG~~Vtl~~~KWa~aIE~~L~n~lnaFiv~sh~D~~~Lr~i~~~~~~~~~~ptIvvs~~~~~~y~~~~~p~~~ 571 (1074)
T KOG0250|consen 492 QTPPKGPLGKYVTLKEPKWALAIERCLGNLLNAFIVTSHKDARILRAIMRRLKIPGNRPTIVVSSFTPFDYSVGRNPGYE 571 (1074)
T ss_pred CCCCCCCccceeEecCcHHHHHHHHHHHHhhhhheeCCHhhHHHHHHHHHHcCCCCCCCcEEEecCCccccccccCCCCC
Confidence 0 0 000
Q ss_pred -------------------------------hh------h---------------------hhHHH-----H--------
Q 037857 391 -------------------------------ED------S---------------------LNEHK-----L-------- 399 (582)
Q Consensus 391 -------------------------------~e------~---------------------~~~l~-----~-------- 399 (582)
.+ - +..-| .
T Consensus 572 ~pTil~~le~ddp~V~N~LID~s~iE~~lLiEdk~Ea~~~m~s~~~p~n~~~aytldg~~~~~~g~~~~~ySt~~~~~r~ 651 (1074)
T KOG0250|consen 572 FPTILDALEFDDPEVLNVLIDKSGIEQVLLIEDKKEAREFMQSDKPPANVTKAYTLDGRQIFAGGPNYRVYSTRGTRARR 651 (1074)
T ss_pred CCceeeeeecCChHHHHHhhhhccceeEEEecchHHHHHHHhcCCCCccceeeeccCccccccCCCCcceeccCCCCCCC
Confidence 00 0 00001 1
Q ss_pred --HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCC
Q 037857 400 --EL-EKLSAETETAMKEEAVIKEEAEHLKQAAEAARMLAKEAEKNLQLALSEVEQAKASERKALGELNVLSIKPDSASN 476 (582)
Q Consensus 400 --~l-qql~~Eae~ak~eae~~~~E~~k~k~E~e~~ka~~~t~E~rL~aa~kE~EAakasEa~Alaeik~l~e~s~~~~~ 476 (582)
-+ --+..+.+..+.++..++.+...+.....+++..+...+.++.-....++..+--=.....+|..|.... ..
T Consensus 652 ~~~~~~s~d~~ie~le~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n~~---e~ 728 (1074)
T KOG0250|consen 652 PGVDEFSFDDEIEDLEREASRLQKEILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTELKNTA---EE 728 (1074)
T ss_pred ccccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---hh
Confidence 11 1244566677777777777777777777777777777777777777777777655555666777776421 12
Q ss_pred ccccHHhhHHhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 477 ITISKEEFDSLNKAVEESVAVAEKKLAEAEAQLLVINARKNEADKKLEANLTDVEEIKNATEAALKSAETATA 549 (582)
Q Consensus 477 Itis~eEye~L~~ka~eaEe~a~kkvaaA~aqve~akase~e~l~kLe~~~~eie~~k~ale~Al~raE~A~~ 549 (582)
-......|+.|...+..... .++.=.+.++..+..-..+.-+.-++....+..+.++...+.+.+.+..
T Consensus 729 ~~~~~~~~~~l~~ei~~~~~----eIe~~~~~~e~l~~e~e~~~~e~~e~~~~~~~~~~~l~~e~~~l~~l~~ 797 (1074)
T KOG0250|consen 729 KQVDISKLEDLAREIKKKEK----EIEEKEAPLEKLKEELEHIELEAQELEEYYAAGREKLQGEISKLDALKE 797 (1074)
T ss_pred hhcchhhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 22233445555555543332 3444456677777777777777788888888888888888888776553
No 34
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=95.50 E-value=11 Score=48.24 Aligned_cols=115 Identities=17% Similarity=0.143 Sum_probs=77.6
Q ss_pred cccCCCcccHHHHHHhhchhhhcccCCCcchhhccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 33 IDTRAPFQSVKAAVSLFGEVKLANNKNKPLFRRTRLSSENVLDKETQLLLARKEIERTKKLLESSESTRARALGDLERAK 112 (582)
Q Consensus 33 iDt~apf~SVk~Avs~FG~~~~~k~~~~~~~~r~~~~~e~v~~~e~qL~~aqeel~k~keql~~aE~~K~qal~ELe~aK 112 (582)
+|--+-|.++|+=+-+|---... .-.-..+|-.+..++..+...|=..++.++..++.++......+..+..++..-+
T Consensus 30 ~~k~~~~~~lk~e~~k~~v~~eq--~~~~~ekK~~~l~q~~~~~~~q~~~~~~e~s~l~~~L~~~~~~~~~l~~~~~~~~ 107 (1822)
T KOG4674|consen 30 PKKSKDFESLKDEDGKTEVNHEQ--QLSELEKKILRLEQRLSDLSRQAKLLRNELSDLRNELEQLSSERSNLSWEIDALK 107 (1822)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhh
Confidence 34444577777666555422111 0001122222233455555567778999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 113 RTMLELTTKLKAVKDSKESAIAAAEHVRKQAKQLEEA 149 (582)
Q Consensus 113 r~veeL~~kLe~a~~~~~~A~e~sE~~k~r~~ElEq~ 149 (582)
..+..|+.-=...+..+++.+.-.+..+.++..+...
T Consensus 108 ~~~~~l~~~~se~~~qkr~l~~~le~~~~ele~l~~~ 144 (1822)
T KOG4674|consen 108 LENSQLRRAKSELQEQKRQLMELLERQKAELEALESE 144 (1822)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988888888877888887777776666665543
No 35
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=95.45 E-value=6.3 Score=44.93 Aligned_cols=128 Identities=18% Similarity=0.266 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHH
Q 037857 87 IERTKKLLESSESTRARALGDLERAKRTMLELTTKLKAVKDSKESAIAAAEHVRKQAKQLEEAKSQKNIGGIAVERKQQV 166 (582)
Q Consensus 87 l~k~keql~~aE~~K~qal~ELe~aKr~veeL~~kLe~a~~~~~~A~e~sE~~k~r~~ElEq~~~~~~~~~~e~a~k~eL 166 (582)
+..++.-+..+...++++..++.+.+-.+++|..+++.+......+..+......++ ...+.++
T Consensus 94 l~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l----------------~~leAe~ 157 (546)
T KOG0977|consen 94 LATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRL----------------SELEAEI 157 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhh----------------hhhhhHH
Confidence 444444555555566666666666666666666666666544444443333222221 2234555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhHH
Q 037857 167 DIAREHYAITASKIDAAKQELNRIRQDFDAALEAKHSALQQAAEAQRLAKVSSERVADLRKQLSAMKEGIK 237 (582)
Q Consensus 167 e~~r~qya~~~aeL~svk~EL~klr~e~~s~~eak~~A~~~a~ea~~~a~~~~~kveeLt~El~~lke~l~ 237 (582)
..++.++...--++.-++.|..+|+.++..+-.. -+..+..=.....++..|..+|.-++..+.
T Consensus 158 ~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~-------ld~Etllr~d~~n~~q~Lleel~f~~~~h~ 221 (546)
T KOG0977|consen 158 NTLKRRIKALEDELKRLKAENSRLREELARARKQ-------LDDETLLRVDLQNRVQTLLEELAFLKRIHK 221 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-------HHHHHHHHHHHHhHHHHHHHHHHHHHhccH
Confidence 5666666666677777777777776666554443 343444444566677788777777764443
No 36
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=93.52 E-value=24 Score=43.37 Aligned_cols=166 Identities=17% Similarity=0.203 Sum_probs=84.8
Q ss_pred HhHHHHHHHHHHhHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 285 QLTENLEIQLAQTTEEIKVLQKQMKQAHAAEMDSMRAVTAELNKATKSLQEAADEECSLRNLVASLKLELEDVQKECAEL 364 (582)
Q Consensus 285 el~~~LE~kL~et~~~ie~Lq~el~~~~~~e~~sv~s~~~ELeeaK~~Lek~~eE~~~l~~~v~SLr~ELek~K~el~~L 364 (582)
..+.+++..|.....+.+.+-.-+..++..-.++-.+++.=|+.++.+...+......++..+.++++=|.+-.+...++
T Consensus 1415 ~~A~~~~~~l~~~~ae~eq~~~~v~ea~~~aseA~~~Aq~~~~~a~as~~q~~~s~~el~~Li~~v~~Flt~~~adp~si 1494 (1758)
T KOG0994|consen 1415 LMAGDADTQLRSKLAEAEQTLSMVREAKLSASEAQQSAQRALEQANASRSQMEESNRELRNLIQQVRDFLTQPDADPDSI 1494 (1758)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 44555555554444443333322222332222344567777888888888888888888888888888887777777776
Q ss_pred HHHHHHH----H------HHh-HHhHHHHhhh-h-hHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 365 KEKEAEM----E------VIK-GALMESIAKE-S-AVECEDSLNEHKLELEKLSAETETAMKEEAVIKEEAEHLKQAAEA 431 (582)
Q Consensus 365 ke~E~~a----~------~~~-~~eL~~~kse-~-a~~~~e~~~~l~~~lqql~~Eae~ak~eae~~~~E~~k~k~E~e~ 431 (582)
++--.+- + ... ..++...-+. + |-..-.....-..-..+|-++++.|++.++..+-.+..+++-+++
T Consensus 1495 ~~vA~~vL~l~lp~tpeqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~ 1574 (1758)
T KOG0994|consen 1495 EEVAEEVLALELPLTPEQIQQLTGEIQERVASLPNVDAILSRTKGDIARAENLQSEAERARSRAEDVKGQAEDVVEALEE 1574 (1758)
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 6543222 1 011 2222221111 0 111111111222333566677777777777766655555554444
Q ss_pred HHhhHHHHHHHHHHHHHHH
Q 037857 432 ARMLAKEAEKNLQLALSEV 450 (582)
Q Consensus 432 ~ka~~~t~E~rL~aa~kE~ 450 (582)
+.-+...++.-|+.+-.++
T Consensus 1575 Ad~Aq~~a~~ai~~a~~~~ 1593 (1758)
T KOG0994|consen 1575 ADVAQGEAQDAIQGADRDI 1593 (1758)
T ss_pred HHHHHHHHHHHHHhhHHHH
Confidence 4444444444443333333
No 37
>PRK11637 AmiB activator; Provisional
Probab=93.17 E-value=16 Score=40.27 Aligned_cols=50 Identities=20% Similarity=0.353 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 77 ETQLLLARKEIERTKKLLESSESTRARALGDLERAKRTMLELTTKLKAVK 126 (582)
Q Consensus 77 e~qL~~aqeel~k~keql~~aE~~K~qal~ELe~aKr~veeL~~kLe~a~ 126 (582)
+.+|..+++++...+..+.........+..+|....+.+..+..+|...+
T Consensus 46 ~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~ 95 (428)
T PRK11637 46 RDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQ 95 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555555555555554444
No 38
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=93.15 E-value=23 Score=42.00 Aligned_cols=112 Identities=18% Similarity=0.192 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC----CCCCCCccccHHhhH
Q 037857 410 TAMKEEAVIKEEAEHLKQAAEAARMLAKEAEKNLQLALSEVEQAKASERKALGELNVLSIK----PDSASNITISKEEFD 485 (582)
Q Consensus 410 ~ak~eae~~~~E~~k~k~E~e~~ka~~~t~E~rL~aa~kE~EAakasEa~Alaeik~l~e~----s~~~~~Itis~eEye 485 (582)
..++--+.++.|+.++-+-+...+..+..++.+|.-..--.+-++-+-+.|+.+-..+... .+++.+
T Consensus 407 ~~~~dhe~~kneL~~a~ekld~mgthl~mad~Q~s~fk~Lke~aegsrrraIeQcnemv~rir~l~~sle~--------- 477 (1265)
T KOG0976|consen 407 QGKKDHEAAKNELQEALEKLDLMGTHLSMADYQLSNFKVLKEHAEGSRRRAIEQCNEMVDRIRALMDSLEK--------- 477 (1265)
T ss_pred hccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHhhhhhHhhHHHHHHHHHHHHHHHhhChhh---------
Confidence 4455556677778888888888888888888888666655566666666666555544432 122111
Q ss_pred HhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 486 SLNKAVEESVAVAEKKLAEAEAQLLVINARKNEADKKLEANLTDVEEIKNATEAALKSAET 546 (582)
Q Consensus 486 ~L~~ka~eaEe~a~kkvaaA~aqve~akase~e~l~kLe~~~~eie~~k~ale~Al~raE~ 546 (582)
.+||. .+++..|+.-.+--.|.++..++|-+.+-.+..++.++--
T Consensus 478 -------------qrKVe---qe~emlKaen~rqakkiefmkEeiQethldyR~els~lA~ 522 (1265)
T KOG0976|consen 478 -------------QRKVE---QEYEMLKAENERQAKKIEFMKEEIQETHLDYRSELSELAH 522 (1265)
T ss_pred -------------hcchH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 11222 2333334434444567788888888888877777766543
No 39
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=92.83 E-value=27 Score=41.96 Aligned_cols=55 Identities=24% Similarity=0.316 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhHHH
Q 037857 184 KQELNRIRQDFDAALEAKHSALQQAAEAQRLAKVSSERVADLRKQLSAMKEGIKQ 238 (582)
Q Consensus 184 k~EL~klr~e~~s~~eak~~A~~~a~ea~~~a~~~~~kveeLt~El~~lke~l~~ 238 (582)
++|+.-+.--+.++.-.|--|..+|+--+--.....+++++|+.+|.=+|.+.+-
T Consensus 303 k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmee 357 (1243)
T KOG0971|consen 303 KEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEE 357 (1243)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444455555666677777777777777778888888888777776653
No 40
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=92.76 E-value=34 Score=42.93 Aligned_cols=58 Identities=26% Similarity=0.335 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 037857 398 KLELEKLSAETETAMKEEAVIKEEAEHLKQAAEAARMLAKEAEKNLQLALSEVEQAKA 455 (582)
Q Consensus 398 ~~~lqql~~Eae~ak~eae~~~~E~~k~k~E~e~~ka~~~t~E~rL~aa~kE~EAaka 455 (582)
...+..+....+.+..........+..+..+..+++..-.+++..|..+...+...+.
T Consensus 468 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~ 525 (1201)
T PF12128_consen 468 KEQLEQADKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARRELEELRA 525 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555566666666666666666666666666666655555543
No 41
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.59 E-value=23 Score=40.43 Aligned_cols=63 Identities=21% Similarity=0.344 Sum_probs=42.2
Q ss_pred HhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHhhhcc
Q 037857 217 VSSERVADLRKQLSAMKEGIKQIKLAAQEATDEQARIVSEKDTLMQSYKAAQEAAENKLNSLKKEYD 283 (582)
Q Consensus 217 ~~~~kveeLt~El~~lke~l~~~~~a~~eA~ee~~~i~~e~~~~~~~~~~~l~e~e~~l~~Lk~el~ 283 (582)
+....|+.|..||.++-+.++.+..+.++|.+==-.++.++ ..++..+++.+.....+|.++|
T Consensus 5 ~aeq~ve~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK----~~Lkqq~eEleaeyd~~R~Eld 67 (772)
T KOG0999|consen 5 MAEQEVEKLRQEIERLTEELEQTTEEKIQAAEYGLELLEEK----EDLKQQLEELEAEYDLARTELD 67 (772)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 34567889999999999999999888888875433334433 3445555555555555555554
No 42
>PRK03918 chromosome segregation protein; Provisional
Probab=91.21 E-value=40 Score=40.39 Aligned_cols=17 Identities=18% Similarity=0.421 Sum_probs=6.9
Q ss_pred hHHHHHHHHHHHHHHhh
Q 037857 219 SERVADLRKQLSAMKEG 235 (582)
Q Consensus 219 ~~kveeLt~El~~lke~ 235 (582)
...++.|..++..++..
T Consensus 458 ~~ei~~l~~~~~~l~~~ 474 (880)
T PRK03918 458 TAELKRIEKELKEIEEK 474 (880)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444433
No 43
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.23 E-value=39 Score=38.64 Aligned_cols=191 Identities=18% Similarity=0.255 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-------
Q 037857 179 KIDAAKQELNRIRQDFDAALEAKHSALQQAAEAQRLAKVSSERVADLRKQLSAMKEGIKQIKLAAQEATDEQA------- 251 (582)
Q Consensus 179 eL~svk~EL~klr~e~~s~~eak~~A~~~a~ea~~~a~~~~~kveeLt~El~~lke~l~~~~~a~~eA~ee~~------- 251 (582)
.++-.++|+.+|-.+|+-+-.++..|..-.-+.-.--..-.++.++|-.+...++-+++..+-|--+..-.+.
T Consensus 9 ~ve~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g~ 88 (772)
T KOG0999|consen 9 EVEKLRQEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARDGE 88 (772)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccch
Confidence 3444445555555555555555444333322222222333445555555555555555554444333332221
Q ss_pred ----HHHHhhhHhHHHHHHHHHHHHHHHHHHhhhccHHhHHHHHH------HHHHhHHHH----HHHHHHHHHHhHhhHH
Q 037857 252 ----RIVSEKDTLMQSYKAAQEAAENKLNSLKKEYDPQLTENLEI------QLAQTTEEI----KVLQKQMKQAHAAEMD 317 (582)
Q Consensus 252 ----~i~~e~~~~~~~~~~~l~e~e~~l~~Lk~el~~el~~~LE~------kL~et~~~i----e~Lq~el~~~~~~e~~ 317 (582)
.++.+-...-..|-..+-+.+++|.+++.++.. .-.+.|. ++.+-++.+ ..|+.+|+.++--+..
T Consensus 89 e~EesLLqESaakE~~yl~kI~eleneLKq~r~el~~-~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~R 167 (772)
T KOG0999|consen 89 EREESLLQESAAKEEYYLQKILELENELKQLRQELTN-VQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREAR 167 (772)
T ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 223333344556777788888888888887731 2222221 222222212 3566666666654332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 318 SMRAVTAELNKATKSLQEAADEECSLRNLVASLKLELEDVQKECAELKEKEAEM 371 (582)
Q Consensus 318 sv~s~~~ELeeaK~~Lek~~eE~~~l~~~v~SLr~ELek~K~el~~Lke~E~~a 371 (582)
+-+-=.||++-..+|+|.-.-+.+.++-+++|+-|+.+...++.-|......+
T Consensus 168 -llseYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~elln~q~ee~ 220 (772)
T KOG0999|consen 168 -LLSEYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLNSQLEEA 220 (772)
T ss_pred -HHHHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445699999999999999999999999999999999988888776655444
No 44
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=90.10 E-value=16 Score=33.90 Aligned_cols=34 Identities=18% Similarity=0.260 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 171 EHYAITASKIDAAKQELNRIRQDFDAALEAKHSA 204 (582)
Q Consensus 171 ~qya~~~aeL~svk~EL~klr~e~~s~~eak~~A 204 (582)
-.|+.++..|..++.++..++.++..+-...+.|
T Consensus 52 ~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a 85 (132)
T PF07926_consen 52 VKHAEDIKELQQLREELQELQQEINELKAEAESA 85 (132)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3589999999999999988887776655554333
No 45
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=90.07 E-value=51 Score=39.78 Aligned_cols=254 Identities=15% Similarity=0.229 Sum_probs=129.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Q 037857 79 QLLLARKEIERTKKLLESSESTRARALGDLERAKRTMLELTTKLKAVKDSKESAIAAAEHVRKQAKQLEE---------- 148 (582)
Q Consensus 79 qL~~aqeel~k~keql~~aE~~K~qal~ELe~aKr~veeL~~kLe~a~~~~~~A~e~sE~~k~r~~ElEq---------- 148 (582)
+...+|++|.+.+.....+-.+|.+--.||....-.|+=++..=+.|..--..--.+.+..+-|+.+|+-
T Consensus 277 qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEme 356 (1243)
T KOG0971|consen 277 QQADLQRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEME 356 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456778888888888888888888888888888888777777777776666666667777777766532
Q ss_pred -HHhhhccCcchHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 037857 149 -AKSQKNIGGIAVERKQQVDIAREHYAITASKI----DAAKQELNRIRQDFDAALEAKHSALQQAAEAQRLAKVSSERVA 223 (582)
Q Consensus 149 -~~~~~~~~~~e~a~k~eLe~~r~qya~~~aeL----~svk~EL~klr~e~~s~~eak~~A~~~a~ea~~~a~~~~~kve 223 (582)
++.+-..+++ ..+ .+|+.-..+...++--| ...|+..+++..++..--.+- .+..+..+--..+++
T Consensus 357 ekG~~~~~~ss-~qf-kqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~-------~eL~r~kE~Lsr~~d 427 (1243)
T KOG0971|consen 357 EKGSDGQAASS-YQF-KQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSEL-------EELRRQKERLSRELD 427 (1243)
T ss_pred hcCCCCcccch-HHH-HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHH-------HHHHHHHHHHHHHHH
Confidence 2222111222 222 22333222333332222 235666666666665443332 223333444555666
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHhhhccHHhHHHHHHHHHHhHHHH-H
Q 037857 224 DLRKQLSAMKEGIKQIKLAAQEATDEQARIVSEKDTLMQSYKAAQEAAENKLNSLKKEYDPQLTENLEIQLAQTTEEI-K 302 (582)
Q Consensus 224 eLt~El~~lke~l~~~~~a~~eA~ee~~~i~~e~~~~~~~~~~~l~e~e~~l~~Lk~el~~el~~~LE~kL~et~~~i-e 302 (582)
.+-.-|+.+||-++-+-.|. .++.+--.....++..+...+..|.+| |...++--+|.+-+-++ -
T Consensus 428 ~aEs~iadlkEQVDAAlGAE--------~MV~qLtdknlnlEekVklLeetv~dl------Ealee~~EQL~Esn~ele~ 493 (1243)
T KOG0971|consen 428 QAESTIADLKEQVDAALGAE--------EMVEQLTDKNLNLEEKVKLLEETVGDL------EALEEMNEQLQESNRELEL 493 (1243)
T ss_pred HHHHHHHHHHHHHHHhhcHH--------HHHHHHHhhccCHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
Confidence 66666777777776653332 122222222233333333333333332 23445555555544332 2
Q ss_pred HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 303 VLQKQMKQAHAAEMDSMRAVTAELNKATKSLQEAADEECSLRNLVASLKLELEDVQK 359 (582)
Q Consensus 303 ~Lq~el~~~~~~e~~sv~s~~~ELeeaK~~Lek~~eE~~~l~~~v~SLr~ELek~K~ 359 (582)
.|++||..++.. +.-+....+.+-.++-.--.=+..|+..|.-|.+-|.-.+.
T Consensus 494 DLreEld~~~g~----~kel~~r~~aaqet~yDrdqTI~KfRelva~Lqdqlqe~~d 546 (1243)
T KOG0971|consen 494 DLREELDMAKGA----RKELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQLQELTD 546 (1243)
T ss_pred HHHHHHHHHhhH----HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555443321 22233333444444333333444555555555555544443
No 46
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=89.52 E-value=55 Score=39.36 Aligned_cols=82 Identities=11% Similarity=0.258 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhHHHHH
Q 037857 161 ERKQQVDIAREHYAITASKIDAAKQELNRIRQDFDAALEAKHSALQQAAEAQRLAKVSSERVADLRKQLSAMKEGIKQIK 240 (582)
Q Consensus 161 a~k~eLe~~r~qya~~~aeL~svk~EL~klr~e~~s~~eak~~A~~~a~ea~~~a~~~~~kveeLt~El~~lke~l~~~~ 240 (582)
+.+.+++.++.-+......-.....-.++++.-|.-........+.+=++.+.-.......+.++..+...+++.|+...
T Consensus 400 a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~ 479 (980)
T KOG0980|consen 400 ASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQ 479 (980)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34455555544455555555555566666666666666666666666666666666666666677777777777776663
Q ss_pred HH
Q 037857 241 LA 242 (582)
Q Consensus 241 ~a 242 (582)
-+
T Consensus 480 ~~ 481 (980)
T KOG0980|consen 480 RA 481 (980)
T ss_pred HH
Confidence 33
No 47
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=89.40 E-value=60 Score=39.58 Aligned_cols=214 Identities=17% Similarity=0.332 Sum_probs=123.9
Q ss_pred HHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 137 EHVRKQAKQLEEAKSQKNIGGIAVERKQQVDIAR--EHYAITASKIDAAKQELNRIRQDFDAALEAKHSALQQAAEAQRL 214 (582)
Q Consensus 137 E~~k~r~~ElEq~~~~~~~~~~e~a~k~eLe~~r--~qya~~~aeL~svk~EL~klr~e~~s~~eak~~A~~~a~ea~~~ 214 (582)
.-..-|+.+||+..- |-+.=++|+..| -+|+.--.+|.-+..+|.+|-.++.++.+.-..-..+-..+...
T Consensus 194 ~yieerLreLEeEKe-------eL~~Yqkldk~rr~lEYtiYdrEl~E~~~~l~~le~~r~~~~e~s~~~~~~~~~~~d~ 266 (1200)
T KOG0964|consen 194 KYIEERLRELEEEKE-------ELEKYQKLDKERRSLEYTIYDRELNEINGELERLEEDRSSAPEESEQYIDALDKVEDE 266 (1200)
T ss_pred HHHHHHHHHHHHhHH-------HHHHHHHHHHhHhhhhhhhhhhHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHH
Confidence 333446666766432 133445666665 38999999999999999999999999998877777777777788
Q ss_pred HHHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhh-----------------HhHHHHHHHHHHHHHHHHH
Q 037857 215 AKVSSERVADLRKQLSAMKEGIKQIKLAAQEATDEQARIVSEKD-----------------TLMQSYKAAQEAAENKLNS 277 (582)
Q Consensus 215 a~~~~~kveeLt~El~~lke~l~~~~~a~~eA~ee~~~i~~e~~-----------------~~~~~~~~~l~e~e~~l~~ 277 (582)
+......+.+|...|..+++..++..+-.-..-++...+...-. ...+.|...+.+.+.+|..
T Consensus 267 ~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~ 346 (1200)
T KOG0964|consen 267 SEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSK 346 (1200)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 88888899999999999998887775554444333322221111 1222333334444444433
Q ss_pred HhhhccHHhHHHHHHHHHHhHHHHHHHHHHHHH--HhHhhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 278 LKKEYDPQLTENLEIQLAQTTEEIKVLQKQMKQ--AHAAEM-------DSMRAVTAELNKATKSLQEAADEECSLRNLVA 348 (582)
Q Consensus 278 Lk~el~~el~~~LE~kL~et~~~ie~Lq~el~~--~~~~e~-------~sv~s~~~ELeeaK~~Lek~~eE~~~l~~~v~ 348 (582)
..-.|.. ..+=| ..+...|..|+.+... ++.+.- +.=.-+..|+...+..|...+.-...++.-+.
T Consensus 347 I~Pky~~--l~~ee---~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ei~~l~~~i~~~ke~e~~lq~e~~ 421 (1200)
T KOG0964|consen 347 IEPKYNS--LVDEE---KRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSEIEKLKRGINDTKEQENILQKEIE 421 (1200)
T ss_pred hhhHHHH--HHhHH---HHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 3333211 11111 1122223333332211 111100 01134566777777777777777777777777
Q ss_pred HHHHHHHHHHHHHH
Q 037857 349 SLKLELEDVQKECA 362 (582)
Q Consensus 349 SLr~ELek~K~el~ 362 (582)
+++.+|..--.++.
T Consensus 422 ~~e~~l~~~~e~i~ 435 (1200)
T KOG0964|consen 422 DLESELKEKLEEIK 435 (1200)
T ss_pred HHHHHHHHHHHHHH
Confidence 77766655444433
No 48
>PHA02562 46 endonuclease subunit; Provisional
Probab=88.78 E-value=47 Score=37.54 Aligned_cols=19 Identities=11% Similarity=0.200 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 037857 172 HYAITASKIDAAKQELNRI 190 (582)
Q Consensus 172 qya~~~aeL~svk~EL~kl 190 (582)
+|...-.++.....++..+
T Consensus 175 ~~~e~~~~i~~l~~~i~~l 193 (562)
T PHA02562 175 KIRELNQQIQTLDMKIDHI 193 (562)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 49
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=88.75 E-value=11 Score=35.56 Aligned_cols=99 Identities=15% Similarity=0.173 Sum_probs=65.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037857 72 NVLDKETQLLLARKEIERTKKLLESSESTRARALGDLERAKRTMLELTTKLKAVKDSKESAIAAAEHVRKQAKQLEEAKS 151 (582)
Q Consensus 72 ~v~~~e~qL~~aqeel~k~keql~~aE~~K~qal~ELe~aKr~veeL~~kLe~a~~~~~~A~e~sE~~k~r~~ElEq~~~ 151 (582)
+...++.+|+.++..|..++..+...+.....+. ...|-|.-|...|+.+...-..+.+-+.-+..++.+++..+.
T Consensus 43 K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E----~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~ 118 (143)
T PF12718_consen 43 KNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAE----QLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVK 118 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHH----HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4455678999999999999999988876554332 666666667777776666655565555555566666655433
Q ss_pred hhccCcchHHHHHHHHHHHHHHHHH
Q 037857 152 QKNIGGIAVERKQQVDIAREHYAIT 176 (582)
Q Consensus 152 ~~~~~~~e~a~k~eLe~~r~qya~~ 176 (582)
.-... . ..|-..++....+|..+
T Consensus 119 ~le~~-~-~~~E~k~eel~~k~~~~ 141 (143)
T PF12718_consen 119 ALEQE-R-DQWEEKYEELEEKYKEA 141 (143)
T ss_pred HHHhh-H-HHHHHHHHHHHHHHHHh
Confidence 22111 1 46888888888888653
No 50
>PRK11637 AmiB activator; Provisional
Probab=88.36 E-value=45 Score=36.82 Aligned_cols=63 Identities=11% Similarity=0.141 Sum_probs=42.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 72 NVLDKETQLLLARKEIERTKKLLESSESTRARALGDLERAKRTMLELTTKLKAVKDSKESAIA 134 (582)
Q Consensus 72 ~v~~~e~qL~~aqeel~k~keql~~aE~~K~qal~ELe~aKr~veeL~~kLe~a~~~~~~A~e 134 (582)
+...++.++...+.++..++.++...+..-..+..+|..+...+..+...|...+..-.....
T Consensus 48 ~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~ 110 (428)
T PRK11637 48 QLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNA 110 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456677777777777777777777777777777777777777777777766644443333
No 51
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=86.83 E-value=41 Score=34.68 Aligned_cols=216 Identities=20% Similarity=0.236 Sum_probs=118.2
Q ss_pred hccHHhHHHHHHHHHHhHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q 037857 281 EYDPQLTENLEIQLAQTTEEIKVLQKQMKQAHAAEMDSMRAVTAELNKATKSLQEAADEECSLRNLV---ASLKLELEDV 357 (582)
Q Consensus 281 el~~el~~~LE~kL~et~~~ie~Lq~el~~~~~~e~~sv~s~~~ELeeaK~~Lek~~eE~~~l~~~v---~SLr~ELek~ 357 (582)
++||-+-..|| +|..++.+|..|..+|..++..=...+...+..|+.....|++..+...-+..+. .-+..+..+.
T Consensus 4 ~~dprVq~eLe-~LN~atd~IN~lE~~L~~ar~~fr~~l~e~~~kL~~~~kkLg~~I~karPYyea~~~a~~aq~e~q~A 82 (239)
T PF05276_consen 4 ELDPRVQEELE-KLNQATDEINRLENELDEARATFRRLLSESTKKLNELAKKLGSCIEKARPYYEARRKAKEAQQEAQKA 82 (239)
T ss_pred ccccHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHH
Confidence 56777777787 7888888999999999888866566677788888888888887766554444332 2222232222
Q ss_pred HHHHHHHHHHHHHH--HHHh-HHhHHHHhhhhhHhhhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 358 QKECAELKEKEAEM--EVIK-GALMESIAKESAVECEDSL-NEHKLELEKLSAETETAMKEEAVIKEEAEHLKQAAEAAR 433 (582)
Q Consensus 358 K~el~~Lke~E~~a--~~~~-~~eL~~~kse~a~~~~e~~-~~l~~~lqql~~Eae~ak~eae~~~~E~~k~k~E~e~~k 433 (582)
..........-..| .+.. +..|... ..-.+ .....+|.+......+|..+...+..+-.+....+
T Consensus 83 a~~yerA~~~h~aAKe~v~laEq~l~~~-------~~~~~D~~wqEmLn~A~~kVneAE~ek~~ae~eH~~~~~~~---- 151 (239)
T PF05276_consen 83 ALQYERANSMHAAAKEMVALAEQSLMSD-------SNWTFDPAWQEMLNHATQKVNEAEQEKTRAEREHQRRARIY---- 151 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC-------CcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 22222221111111 1111 1111111 00001 11223444444443344333332222222222222
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccccHHhhHHhhHHHHHHHHHHHhHHHHHHHHHHHHH
Q 037857 434 MLAKEAEKNLQLALSEVEQAKASERKALGELNVLSIKPDSASNITISKEEFDSLNKAVEESVAVAEKKLAEAEAQLLVIN 513 (582)
Q Consensus 434 a~~~t~E~rL~aa~kE~EAakasEa~Alaeik~l~e~s~~~~~Itis~eEye~L~~ka~eaEe~a~kkvaaA~aqve~ak 513 (582)
..++.++....+.+ + ..|. ---.|+.+.-+...-=+....+|..-..+|..+|
T Consensus 152 ---~~ae~~v~~Lek~l--------------k---------r~I~-KSrPYfe~K~~~~~~l~~~k~~v~~Le~~v~~aK 204 (239)
T PF05276_consen 152 ---NEAEQRVQQLEKKL--------------K---------RAIK-KSRPYFELKAKFNQQLEEQKEKVEELEAKVKQAK 204 (239)
T ss_pred ---HHHHHHHHHHHHHH--------------H---------HHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22233322222111 1 1122 1245777777776665666789999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 037857 514 ARKNEADKKLEANLTDVEEIKN 535 (582)
Q Consensus 514 ase~e~l~kLe~~~~eie~~k~ 535 (582)
..=..+|..||.+..+|-+.|.
T Consensus 205 ~~Y~~ALrnLE~ISeeIH~~R~ 226 (239)
T PF05276_consen 205 SRYSEALRNLEQISEEIHEQRR 226 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999977664
No 52
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=86.13 E-value=58 Score=35.79 Aligned_cols=38 Identities=24% Similarity=0.342 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 77 ETQLLLARKEIERTKKLLESSESTRARALGDLERAKRT 114 (582)
Q Consensus 77 e~qL~~aqeel~k~keql~~aE~~K~qal~ELe~aKr~ 114 (582)
..||..+..+|.-...++..+|+++..+-+||..++-.
T Consensus 80 ~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e 117 (499)
T COG4372 80 RPQLRALRTELGTAQGEKRAAETEREAARSELQKARQE 117 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444455555555555555555554443
No 53
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=85.98 E-value=45 Score=34.38 Aligned_cols=50 Identities=24% Similarity=0.402 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 317 DSMRAVTAELNKATKSLQEAADEECSLRNLVASLKLELEDVQKECAELKE 366 (582)
Q Consensus 317 ~sv~s~~~ELeeaK~~Lek~~eE~~~l~~~v~SLr~ELek~K~el~~Lke 366 (582)
.....+..|+..++..+..+.+++..++.-..-|..++.-.+..+..++.
T Consensus 89 ~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~ 138 (239)
T COG1579 89 RELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEK 138 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555555555555555555555555444433
No 54
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=85.80 E-value=84 Score=37.31 Aligned_cols=188 Identities=15% Similarity=0.216 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHH
Q 037857 90 TKKLLESSESTRARALGDLERAKRTMLELTTKLKAVKDSKESAIAAAEHVRKQAKQLEEAKSQKNIGGIAVERKQQVDIA 169 (582)
Q Consensus 90 ~keql~~aE~~K~qal~ELe~aKr~veeL~~kLe~a~~~~~~A~e~sE~~k~r~~ElEq~~~~~~~~~~e~a~k~eLe~~ 169 (582)
|+-|+..-...-..+-.||...+...+.|..+|-....++.+-++.+.....|+.+....- .....+|..-
T Consensus 444 LRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R---------~~lEkQL~eE 514 (697)
T PF09726_consen 444 LRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQR---------ASLEKQLQEE 514 (697)
T ss_pred HHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHH
Confidence 3334333333345677889999999999999998888888888888777777765532110 1112222222
Q ss_pred HHH---------------------HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 037857 170 REH---------------------YAITAS-KIDAAKQELNRIRQDFDAALEAKHSALQQAAEAQRLAKVSSERVADLRK 227 (582)
Q Consensus 170 r~q---------------------ya~~~a-eL~svk~EL~klr~e~~s~~eak~~A~~~a~ea~~~a~~~~~kveeLt~ 227 (582)
|.+ .+.... -..-.-.|+.+|+.|+...=+.......+..+....-+.+.+.++.|-.
T Consensus 515 rk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~ 594 (697)
T PF09726_consen 515 RKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMS 594 (697)
T ss_pred HHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 211 111110 1112225888898888887777777777775554443667778888888
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHhhhccH--HhHHHHHHHHHHh
Q 037857 228 QLSAMKEGIKQIKLAAQEATDEQARIVSEKDTLMQSYKAAQEAAENKLNSLKKEYDP--QLTENLEIQLAQT 297 (582)
Q Consensus 228 El~~lke~l~~~~~a~~eA~ee~~~i~~e~~~~~~~~~~~l~e~e~~l~~Lk~el~~--el~~~LE~kL~et 297 (582)
.|.+|++--... ..-+......++++-..|-.+...|+.+...+-. -=..+|.+|+++.
T Consensus 595 aL~amqdk~~~L-----------E~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~ 655 (697)
T PF09726_consen 595 ALSAMQDKNQHL-----------ENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQL 655 (697)
T ss_pred HHHHHHHHHHHH-----------HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888887754333 1223333445677777888888888776554410 1144555555543
No 55
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=85.56 E-value=1.1e+02 Score=38.26 Aligned_cols=165 Identities=16% Similarity=0.267 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 037857 77 ETQLLLARKEIERTKKLLESSESTRARALGDLERAKRTMLELTTKLKAVKDSKESAIAAAEHVRKQAKQLEEAKSQKNIG 156 (582)
Q Consensus 77 e~qL~~aqeel~k~keql~~aE~~K~qal~ELe~aKr~veeL~~kLe~a~~~~~~A~e~sE~~k~r~~ElEq~~~~~~~~ 156 (582)
+..|..+...+.|+..+++.+...+.-+..-++.+.+.+..+...++.-...........+-.+. .+.+ +
T Consensus 404 ~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~---~l~~----~--- 473 (1293)
T KOG0996|consen 404 EEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILD---SLKQ----E--- 473 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhh----h---
Confidence 44666777777777777777777777777777777777777777766655333333322111111 1111 1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhH
Q 037857 157 GIAVERKQQVDIAREHYAITASKIDAAKQELNRIRQDFDAALEAKHSALQQAAEAQRLAKVSSERVADLRKQLSAMKEGI 236 (582)
Q Consensus 157 ~~e~a~k~eLe~~r~qya~~~aeL~svk~EL~klr~e~~s~~eak~~A~~~a~ea~~~a~~~~~kveeLt~El~~lke~l 236 (582)
. ...+.++........-....+.-++.|++-.+-+++.+......+.++.+++............+...+|..+++.|
T Consensus 474 -t-~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l 551 (1293)
T KOG0996|consen 474 -T-EGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEEL 551 (1293)
T ss_pred -h-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1 23456666666777777777788888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHH
Q 037857 237 KQIKLAAQEATDEQARI 253 (582)
Q Consensus 237 ~~~~~a~~eA~ee~~~i 253 (582)
.+.+.--.++.++...+
T Consensus 552 ~~~k~e~~~~~k~l~~~ 568 (1293)
T KOG0996|consen 552 PSLKQELKEKEKELPKL 568 (1293)
T ss_pred hhHHHHHHHHHHhHHHH
Confidence 88766666666655443
No 56
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=84.36 E-value=30 Score=32.32 Aligned_cols=114 Identities=18% Similarity=0.247 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHh
Q 037857 77 ETQLLLARKEIERTKKLLESSESTRARALGDLERAKRTMLELTTKLKAVK-----DSKESAIAAAEHVRKQAKQLEEAKS 151 (582)
Q Consensus 77 e~qL~~aqeel~k~keql~~aE~~K~qal~ELe~aKr~veeL~~kLe~a~-----~~~~~A~e~sE~~k~r~~ElEq~~~ 151 (582)
+.+|+.+++++..++.++..++.+-.+..++|..|-+++.|...++..=- .+-.+-++ .+.
T Consensus 14 ~aeL~~a~~~I~~~q~r~a~a~~~~~~r~seldqA~~~~~eae~k~~~~~a~~P~~~~~~~wq----lkv---------- 79 (136)
T PF11570_consen 14 RAELDQADEDIATLQERQASAEQALNGRRSELDQANKKVKEAEIKQDEFFANNPPHEYGRGWQ----LKV---------- 79 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCTT-TTSSCHHHHH----HHH----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcccccccCCCccccccHHH----HHH----------
Confidence 56999999999999999999999999999999999888888443332100 00111111 111
Q ss_pred hhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 152 QKNIGGIAVERKQQVDIAREHYAITASKIDAAKQELNRIRQDFDAALEAKHSALQQAAEAQ 212 (582)
Q Consensus 152 ~~~~~~~e~a~k~eLe~~r~qya~~~aeL~svk~EL~klr~e~~s~~eak~~A~~~a~ea~ 212 (582)
.-|+.++..-..++..+-.+|-.+-.||.+++-=+..+.+.+....++..+|.
T Consensus 80 --------r~a~~dv~nkq~~l~AA~~~l~~~~~el~~~~~al~~A~e~Rkq~eskk~dAe 132 (136)
T PF11570_consen 80 --------RRAQKDVQNKQNKLKAAQKELNAADEELNRIQAALSQAMERRKQKESKKKDAE 132 (136)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHCCC
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 12455555556777778888888888888888888888888888877766553
No 57
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=84.18 E-value=1.2e+02 Score=37.81 Aligned_cols=110 Identities=19% Similarity=0.265 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHhhhc-
Q 037857 204 ALQQAAEAQRLAKVSSERVADLRKQLSAMKEGIKQIKLAAQEATDEQARIVSEKDTLMQSYKAAQEAAENKLNSLKKEY- 282 (582)
Q Consensus 204 A~~~a~ea~~~a~~~~~kveeLt~El~~lke~l~~~~~a~~eA~ee~~~i~~e~~~~~~~~~~~l~e~e~~l~~Lk~el- 282 (582)
|..+|..|-..+......+..-..|...+---+-.+++-.-+|++.-..++.+-...+........++++.+++++.=|
T Consensus 1406 a~t~A~~A~~~A~~~~~~l~~~~ae~eq~~~~v~ea~~~aseA~~~Aq~~~~~a~as~~q~~~s~~el~~Li~~v~~Flt 1485 (1758)
T KOG0994|consen 1406 AVTRAGGALLMAGDADTQLRSKLAEAEQTLSMVREAKLSASEAQQSAQRALEQANASRSQMEESNRELRNLIQQVRDFLT 1485 (1758)
T ss_pred hhcccchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444444444444433333333333322222232333344433334444444444455555555566666655432
Q ss_pred ----cHHhHH-----HHHHHHHHhHHHHHHHHHHHHHHhH
Q 037857 283 ----DPQLTE-----NLEIQLAQTTEEIKVLQKQMKQAHA 313 (582)
Q Consensus 283 ----~~el~~-----~LE~kL~et~~~ie~Lq~el~~~~~ 313 (582)
||.-.+ -|+..|-.+...|..|..+|.....
T Consensus 1486 ~~~adp~si~~vA~~vL~l~lp~tpeqi~~L~~~I~e~v~ 1525 (1758)
T KOG0994|consen 1486 QPDADPDSIEEVAEEVLALELPLTPEQIQQLTGEIQERVA 1525 (1758)
T ss_pred CCCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHH
Confidence 332222 2333333344556666666654443
No 58
>PHA02562 46 endonuclease subunit; Provisional
Probab=84.17 E-value=80 Score=35.68 Aligned_cols=51 Identities=22% Similarity=0.246 Sum_probs=24.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhhccH--HhHHHHHHHHHHhHHHHHHHHHHHH
Q 037857 259 TLMQSYKAAQEAAENKLNSLKKEYDP--QLTENLEIQLAQTTEEIKVLQKQMK 309 (582)
Q Consensus 259 ~~~~~~~~~l~e~e~~l~~Lk~el~~--el~~~LE~kL~et~~~ie~Lq~el~ 309 (582)
.....++..+...+.+|.+|+.+++. +....++..+......+..++..+.
T Consensus 227 ~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~~~~~~ 279 (562)
T PHA02562 227 EEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIK 279 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555566666666666655421 3333444444444444444444433
No 59
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=83.60 E-value=58 Score=33.62 Aligned_cols=70 Identities=20% Similarity=0.319 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHhhhccHHhHHHHHHHHH
Q 037857 219 SERVADLRKQLSAMKEGIKQIKLAAQEATDEQARIVSEKDTLMQSYKAAQEAAENKLNSLKKEYDPQLTENLEIQLA 295 (582)
Q Consensus 219 ~~kveeLt~El~~lke~l~~~~~a~~eA~ee~~~i~~e~~~~~~~~~~~l~e~e~~l~~Lk~el~~el~~~LE~kL~ 295 (582)
...++.|+.++..+++.+....---.++.. .-+...............+...|..+++|++....|.-..
T Consensus 116 ~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~-------~~e~e~~~i~e~~~~~~~~~~~L~~~l~~ell~~yeri~~ 185 (239)
T COG1579 116 MEEIEKLEKEIEDLKERLERLEKNLAEAEA-------RLEEEVAEIREEGQELSSKREELKEKLDPELLSEYERIRK 185 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHh
Confidence 344556666666666665554222211111 1111122222333344455556778888877777765544
No 60
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.00 E-value=1.1e+02 Score=36.51 Aligned_cols=233 Identities=15% Similarity=0.180 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Q 037857 71 ENVLDKETQLLLARKEIERTKKLLESSESTRARALGDLERAKRTMLELTTKLKAVK-------DSKESAIAAAEHVRKQA 143 (582)
Q Consensus 71 e~v~~~e~qL~~aqeel~k~keql~~aE~~K~qal~ELe~aKr~veeL~~kLe~a~-------~~~~~A~e~sE~~k~r~ 143 (582)
|+..+.|.+|+.-+++=.+-......+-..-..=..-|+.-+..+.+|..+-.+-+ .-.++.-...++..+..
T Consensus 374 ekqLerQReiE~qrEEerkkeie~rEaar~ElEkqRqlewErar~qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k~ 453 (1118)
T KOG1029|consen 374 EKQLERQREIERQREEERKKEIERREAAREELEKQRQLEWERARRQEMLNQKNREQEWIVYLNAKKKQLQQELETLNFKL 453 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 037857 144 KQLEEAKSQKNIGGIAVERKQQVDIAREHYAITASKIDAAKQELNRIRQDFDAALEAKHSALQQAAEAQRLAKVSSERVA 223 (582)
Q Consensus 144 ~ElEq~~~~~~~~~~e~a~k~eLe~~r~qya~~~aeL~svk~EL~klr~e~~s~~eak~~A~~~a~ea~~~a~~~~~kve 223 (582)
++|.+.+++-..+.- -.|.+++.++.+...-+++.+-.++.|..++.-+--++-+|
T Consensus 454 qqls~kl~Dvr~~~t--t~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ek---------------------- 509 (1118)
T KOG1029|consen 454 QQLSGKLQDVRVDIT--TQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEK---------------------- 509 (1118)
T ss_pred HHHhhhhhhheeccc--hHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH----------------------
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHhhhccHHhHHHHHHHHHHhHHHHHH
Q 037857 224 DLRKQLSAMKEGIKQIKLAAQEATDEQARIVSEKDTLMQSYKAAQEAAENKLNSLKKEYDPQLTENLEIQLAQTTEEIKV 303 (582)
Q Consensus 224 eLt~El~~lke~l~~~~~a~~eA~ee~~~i~~e~~~~~~~~~~~l~e~e~~l~~Lk~el~~el~~~LE~kL~et~~~ie~ 303 (582)
..++.-|-....+| ...+.....++......+--.+.|+..+| ++.++.++||.++...-..
T Consensus 510 ------q~l~~qlkq~q~a~-----------~~~~~~~s~L~aa~~~ke~irq~ikdqld-elskE~esk~~eidi~n~q 571 (1118)
T KOG1029|consen 510 ------QELNHQLKQKQSAH-----------KETTQRKSELEAARRKKELIRQAIKDQLD-ELSKETESKLNEIDIFNNQ 571 (1118)
T ss_pred ------HHHHHHHHHhhhhc-----------cCcchHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhHHHH
Q ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 304 LQKQMKQAHAAEMDSMRAVTAELNKATKSLQEAADEECSLRNLVASLKLELEDVQKE 360 (582)
Q Consensus 304 Lq~el~~~~~~e~~sv~s~~~ELeeaK~~Lek~~eE~~~l~~~v~SLr~ELek~K~e 360 (582)
|.+ ++.++..--...+....-.+....-+..-..||...+..
T Consensus 572 lke---------------lk~~~~~q~lake~~yk~e~d~~ke~et~~lel~~~ke~ 613 (1118)
T KOG1029|consen 572 LKE---------------LKEDVNSQQLAKEELYKNERDKLKEAETKALELIGEKEA 613 (1118)
T ss_pred HHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
No 61
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=82.68 E-value=40 Score=31.12 Aligned_cols=91 Identities=19% Similarity=0.213 Sum_probs=66.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037857 73 VLDKETQLLLARKEIERTKKLLESSESTRARALGDLERAKRTMLELTTKLKAVKDSKESAIAAAEHVRKQAKQLEEAKSQ 152 (582)
Q Consensus 73 v~~~e~qL~~aqeel~k~keql~~aE~~K~qal~ELe~aKr~veeL~~kLe~a~~~~~~A~e~sE~~k~r~~ElEq~~~~ 152 (582)
+..++.+|....-++.-++.++...+..|..+-.|+-+--...+++.......
T Consensus 18 ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~--------------------------- 70 (120)
T PF12325_consen 18 VERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEV--------------------------- 70 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------
Confidence 33456788888899999999999999999999999888666666553222111
Q ss_pred hccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 153 KNIGGIAVERKQQVDIAREHYAITASKIDAAKQELNRIRQDFDAA 197 (582)
Q Consensus 153 ~~~~~~e~a~k~eLe~~r~qya~~~aeL~svk~EL~klr~e~~s~ 197 (582)
..++.++...+.+|...+--|---.+++..|+.++..+
T Consensus 71 -------~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~Dl 108 (120)
T PF12325_consen 71 -------EELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDL 108 (120)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 24566777777888888888887777777777777543
No 62
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=81.67 E-value=77 Score=33.68 Aligned_cols=63 Identities=16% Similarity=0.184 Sum_probs=37.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 037857 392 DSLNEHKLELEKLSAETETAMKEEAVIKEEAEHLKQAAEAARMLAKEAEKNLQLALSEVEQAK 454 (582)
Q Consensus 392 e~~~~l~~~lqql~~Eae~ak~eae~~~~E~~k~k~E~e~~ka~~~t~E~rL~aa~kE~EAak 454 (582)
+.|..++.....+..+++....+.......+.....++.++...+...+.+|.+......+++
T Consensus 193 e~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~l~~~~~~~~ 255 (294)
T COG1340 193 EEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKALRAKEKAAK 255 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344555555555665665555556666666666666666666666666665555555444
No 63
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=79.82 E-value=1.8e+02 Score=36.75 Aligned_cols=36 Identities=17% Similarity=0.330 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 159 AVERKQQVDIAREHYAITASKIDAAKQELNRIRQDF 194 (582)
Q Consensus 159 e~a~k~eLe~~r~qya~~~aeL~svk~EL~klr~e~ 194 (582)
++.|+.+++..+.+|......-..+......+++.+
T Consensus 354 l~~~~~~~~~l~~~~~~Lt~~~~di~~ky~~~~~~l 389 (1201)
T PF12128_consen 354 LPEWRNELENLQEQLDLLTSKHQDIESKYNKLKQKL 389 (1201)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999888887776666666555554444444
No 64
>PRK03918 chromosome segregation protein; Provisional
Probab=79.33 E-value=1.5e+02 Score=35.57 Aligned_cols=34 Identities=15% Similarity=0.145 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 84 RKEIERTKKLLESSESTRARALGDLERAKRTMLE 117 (582)
Q Consensus 84 qeel~k~keql~~aE~~K~qal~ELe~aKr~vee 117 (582)
+..++.++.++......-.....++......+..
T Consensus 192 ~~~l~~l~~~~~~l~~ei~~l~~e~~~l~~~~~~ 225 (880)
T PRK03918 192 EELIKEKEKELEEVLREINEISSELPELREELEK 225 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444443333333333333333333
No 65
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=77.65 E-value=1.1e+02 Score=33.30 Aligned_cols=71 Identities=14% Similarity=0.321 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhHHHH
Q 037857 160 VERKQQVDIAREHYAITASKIDAAKQELNRIRQDFDAALEAKHSALQQAAEAQRLAKVSSERVADLRKQLSAMKEGIKQI 239 (582)
Q Consensus 160 ~a~k~eLe~~r~qya~~~aeL~svk~EL~klr~e~~s~~eak~~A~~~a~ea~~~a~~~~~kveeLt~El~~lke~l~~~ 239 (582)
..|+.-|+.++..+..+...+..++..|.+|+.++...++.=..-.+.. -...+.|..+.-..+..|..+
T Consensus 216 kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~i----------N~qle~l~~eYr~~~~~ls~~ 285 (359)
T PF10498_consen 216 KDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYI----------NNQLEPLIQEYRSAQDELSEV 285 (359)
T ss_pred chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHhHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999999999999999988887643333222 234445544444444444444
Q ss_pred H
Q 037857 240 K 240 (582)
Q Consensus 240 ~ 240 (582)
.
T Consensus 286 ~ 286 (359)
T PF10498_consen 286 Q 286 (359)
T ss_pred H
Confidence 3
No 66
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=76.97 E-value=62 Score=29.92 Aligned_cols=94 Identities=26% Similarity=0.254 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHhhhhhHhhhhhhhHHHHHHHHH
Q 037857 325 ELNKATKSLQEAADEECSLRNLVASLKLELEDVQKECAELKEKEAEMEVIKGALMESIAKESAVECEDSLNEHKLELEKL 404 (582)
Q Consensus 325 ELeeaK~~Lek~~eE~~~l~~~v~SLr~ELek~K~el~~Lke~E~~a~~~~~~eL~~~kse~a~~~~e~~~~l~~~lqql 404 (582)
++......+..+......+...+.+++.+|.........++.+= +.+| +.++ .....|..+
T Consensus 4 e~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~Y-------E~El-------~~Ha-----~~~~~L~~l 64 (132)
T PF07926_consen 4 ELSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKY-------EREL-------VKHA-----EDIKELQQL 64 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHH-------HHhH-----HHHHHHHHH
Confidence 44444444555555555555555555555555444444433320 1111 1122 234566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 037857 405 SAETETAMKEEAVIKEEAEHLKQAAEAARMLAK 437 (582)
Q Consensus 405 ~~Eae~ak~eae~~~~E~~k~k~E~e~~ka~~~ 437 (582)
..+....+.....++.++..++......+....
T Consensus 65 r~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~ 97 (132)
T PF07926_consen 65 REELQELQQEINELKAEAESAKAELEESEASWE 97 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 666555555444444444444444444443333
No 67
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=74.92 E-value=78 Score=30.05 Aligned_cols=66 Identities=12% Similarity=0.292 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhHHHHH
Q 037857 175 ITASKIDAAKQELNRIRQDFDAALEAKHSALQQAAEAQRLAKVSSERVADLRKQLSAMKEGIKQIK 240 (582)
Q Consensus 175 ~~~aeL~svk~EL~klr~e~~s~~eak~~A~~~a~ea~~~a~~~~~kveeLt~El~~lke~l~~~~ 240 (582)
.+=++-++.++-+..|..++.++=+.+..++.+++.+..-...-...++.|+.++..+...|+...
T Consensus 14 ~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~ 79 (140)
T PF10473_consen 14 ESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLR 79 (140)
T ss_pred HHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445556666677777777777777777777777777777777788888888888888888764
No 68
>PRK12472 hypothetical protein; Provisional
Probab=74.49 E-value=1e+02 Score=34.94 Aligned_cols=36 Identities=28% Similarity=0.209 Sum_probs=23.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 037857 491 VEESVAVAEKKLAEAEAQLLVINARKNEADKKLEAN 526 (582)
Q Consensus 491 a~eaEe~a~kkvaaA~aqve~akase~e~l~kLe~~ 526 (582)
+.+....+..++..|..|++.|++.--.-+.-+-.+
T Consensus 260 a~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~ 295 (508)
T PRK12472 260 AEERQQKAAQQAAEAATQLDTAKADAEAKRAAAAAT 295 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 335666677788888888888887654444333333
No 69
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=74.17 E-value=1.5e+02 Score=32.84 Aligned_cols=119 Identities=17% Similarity=0.218 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc
Q 037857 78 TQLLLARKEIERTKKLLESSESTRARALGDLERAKRTMLELTTKLKAVKDSKESAIAAAEHVRKQAKQLEEAKSQKNIGG 157 (582)
Q Consensus 78 ~qL~~aqeel~k~keql~~aE~~K~qal~ELe~aKr~veeL~~kLe~a~~~~~~A~e~sE~~k~r~~ElEq~~~~~~~~~ 157 (582)
-||+-++.+|.-++.++..++.+|..+..|-+.++-. |+.+..++
T Consensus 74 fqlddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~E-------l~~~r~e~---------------------------- 118 (499)
T COG4372 74 FQLDDIRPQLRALRTELGTAQGEKRAAETEREAARSE-------LQKARQER---------------------------- 118 (499)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH----------------------------
Confidence 3888888888888888888888887777665554322 22222111
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 037857 158 IAVERKQQVDIAREHYAITASKIDAAKQELNRIRQDFDAALEAKHSALQQAAEAQRLAKVSSERVADLRKQLSAMK 233 (582)
Q Consensus 158 ~e~a~k~eLe~~r~qya~~~aeL~svk~EL~klr~e~~s~~eak~~A~~~a~ea~~~a~~~~~kveeLt~El~~lk 233 (582)
...++++..++..|+.+..+|..+...-+.++..+..+.+.+.....++.......+.---.++.|..++-.|+
T Consensus 119 --~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~ 192 (499)
T COG4372 119 --EAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLK 192 (499)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23456677777788888888888888888888888888888877777777655555544445666666665554
No 70
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=72.94 E-value=87 Score=29.72 Aligned_cols=24 Identities=21% Similarity=0.425 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 178 SKIDAAKQELNRIRQDFDAALEAK 201 (582)
Q Consensus 178 aeL~svk~EL~klr~e~~s~~eak 201 (582)
.++..+..+|..+..+++++..+|
T Consensus 59 ~el~~lt~el~~L~~EL~~l~sEk 82 (140)
T PF10473_consen 59 EELEELTSELNQLELELDTLRSEK 82 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666667777777766666
No 71
>PRK09039 hypothetical protein; Validated
Probab=72.85 E-value=1.4e+02 Score=32.17 Aligned_cols=22 Identities=9% Similarity=0.342 Sum_probs=10.9
Q ss_pred HHhhHHHHHHHHHHHHHHhhHH
Q 037857 216 KVSSERVADLRKQLSAMKEGIK 237 (582)
Q Consensus 216 ~~~~~kveeLt~El~~lke~l~ 237 (582)
..+..+-..|..+|..++..+.
T Consensus 70 ~le~~~~~~l~~~l~~l~~~l~ 91 (343)
T PRK09039 70 SLERQGNQDLQDSVANLRASLS 91 (343)
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 3344444455555555555554
No 72
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=69.66 E-value=2.9e+02 Score=34.35 Aligned_cols=243 Identities=14% Similarity=0.187 Sum_probs=127.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 037857 77 ETQLLLARKEIERTKKLLESSESTRARALGDLERAKRTMLELTTKLKAVKDSKESAIAAAEHVRKQAKQLEEAKSQKNIG 156 (582)
Q Consensus 77 e~qL~~aqeel~k~keql~~aE~~K~qal~ELe~aKr~veeL~~kLe~a~~~~~~A~e~sE~~k~r~~ElEq~~~~~~~~ 156 (582)
+..++.+..--.++.+++..... +.. ++....-.+..|...|.-+.....+-+..++.-++..+.++.++....+.
T Consensus 651 ek~~~~L~~~k~rl~eel~ei~~-~~~---e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~ 726 (1141)
T KOG0018|consen 651 EKEVDQLKEKKERLLEELKEIQK-RRK---EVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPE 726 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCch
Confidence 34556666666677777776666 333 77777777777777777776666666666666666666666555543322
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhhHHHHHHHHH
Q 037857 157 GIAVERKQQVDIAREHYAITASKIDAAKQELNRIRQDFDAALEAKHSA--------LQQAAEAQRLAKVSSERVADLRKQ 228 (582)
Q Consensus 157 ~~e~a~k~eLe~~r~qya~~~aeL~svk~EL~klr~e~~s~~eak~~A--------~~~a~ea~~~a~~~~~kveeLt~E 228 (582)
-..+...|+.-..++..|+.....+.+.--.- +..=++... .+.-+++--++..-
T Consensus 727 ----------------i~~i~r~l~~~e~~~~~L~~~~n~ved~if~~f~~~igv~ir~Yee~~~-~~~~a~k~~ef~~q 789 (1141)
T KOG0018|consen 727 ----------------ISEIKRKLQNREGEMKELEERMNKVEDRIFKGFCRRIGVRIREYEEREL-QQEFAKKRLEFENQ 789 (1141)
T ss_pred ----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCeeeehHHHHHH-HHHHHHHHHHHHHH
Confidence 22222334444444444444433322221111 111122211 22223333333333
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHhhhccHHhHHHHHHHHHHhHHHHHHHHHHH
Q 037857 229 LSAMKEGIKQIKLAAQEATDEQARIVSEKDTLMQSYKAAQEAAENKLNSLKKEYDPQLTENLEIQLAQTTEEIKVLQKQM 308 (582)
Q Consensus 229 l~~lke~l~~~~~a~~eA~ee~~~i~~e~~~~~~~~~~~l~e~e~~l~~Lk~el~~el~~~LE~kL~et~~~ie~Lq~el 308 (582)
+..+.-.|+-. .+ .+....++-++..++++..+++ .|+-.-......|..+ .+|
T Consensus 790 ~~~l~~~l~fe---------------~~-----~d~~~~ve~~~~~v~~~~~~~~-----~~~~~e~~~~k~i~e~-~~~ 843 (1141)
T KOG0018|consen 790 KAKLENQLDFE---------------KQ-----KDTQRRVERWERSVEDLEKEIE-----GLKKDEEAAEKIIAEI-EEL 843 (1141)
T ss_pred HHHHhhhhhhe---------------ec-----ccHHHHHHHHHHHHHHHHHhHH-----hhHHHHHHHHHHHhhH-HHH
Confidence 32222222221 11 2223334444444444444432 1111112222233333 444
Q ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 309 KQAHAAEMDSMRAVTAELNKATKSLQEAADEECSLRNLVASLKLELEDVQKECAELKEKEA 369 (582)
Q Consensus 309 ~~~~~~e~~sv~s~~~ELeeaK~~Lek~~eE~~~l~~~v~SLr~ELek~K~el~~Lke~E~ 369 (582)
+. +. ...+.....|+.+++.-+..+..+...|..-+.++.+.+++-..+...|...-+
T Consensus 844 e~-k~--k~~~~~~~~e~~e~~k~~~~~~~~~tkl~~~i~~~es~ie~~~~er~~lL~~ck 901 (1141)
T KOG0018|consen 844 EK-KN--KSKFEKKEDEINEVKKILRRLVKELTKLDKEITSIESKIERKESERHNLLSKCK 901 (1141)
T ss_pred HH-HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhh
Confidence 44 11 345666788889999999999999999999999999999888888777765443
No 73
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=69.38 E-value=3.3e+02 Score=34.95 Aligned_cols=161 Identities=14% Similarity=0.143 Sum_probs=73.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 72 NVLDKETQLLLARKEIERTKKLLESSESTRARALG----------------DLERAKRTMLELTTKLKAVKDSKESAIAA 135 (582)
Q Consensus 72 ~v~~~e~qL~~aqeel~k~keql~~aE~~K~qal~----------------ELe~aKr~veeL~~kLe~a~~~~~~A~e~ 135 (582)
+..+++.+|..+...+..+..++......+.++-. ++..|.+.+......+..+...-..+..+
T Consensus 743 ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~~~Ps~~dL~~A~~~l~~A~~~~~~a~~~l~~a~~~l~~a~~~ 822 (1353)
T TIGR02680 743 RIAELDARLAAVDDELAELARELRALGARQRALADELAGAPSDRSLRAAHRRAAEAERQAESAERELARAARKAAAAAAA 822 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666666666666555444433 34444444445555555554444444444
Q ss_pred HHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 136 AEHVRKQAKQLEEAKSQKNIGGIAVERKQQVDIAREHYAITASKIDAAKQELNRIRQDFDAALEAKHSALQQAAEAQRLA 215 (582)
Q Consensus 136 sE~~k~r~~ElEq~~~~~~~~~~e~a~k~eLe~~r~qya~~~aeL~svk~EL~klr~e~~s~~eak~~A~~~a~ea~~~a 215 (582)
...++.++.+. ..+-....+.... ..+..+=..|...+..|...-++|......|..+...-..+..+.+.+....
T Consensus 823 ~~~a~~~l~~a---aa~l~L~a~~~~l-~~~~~aL~~y~~~l~~l~~~~~~L~~A~~~~~~a~~~le~ae~~l~~~~~e~ 898 (1353)
T TIGR02680 823 WKQARRELERD---AADLDLPTDPDAL-EAVGLALKRFGDHLHTLEVAVRELRHAATRAAEQRARAARAESDAREAAEDA 898 (1353)
T ss_pred HHHHHHHHHHH---HhcCCCCCChhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444333332 1111111110111 1122222345555555555555555555555554444444444444444444
Q ss_pred HHhhHHHHHHHHHHHHHHhhH
Q 037857 216 KVSSERVADLRKQLSAMKEGI 236 (582)
Q Consensus 216 ~~~~~kveeLt~El~~lke~l 236 (582)
......+..+..++..+.+.+
T Consensus 899 ~~~~~e~~~a~~~l~~l~e~l 919 (1353)
T TIGR02680 899 AEARAEAEEASLRLRTLEESV 919 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444333
No 74
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=68.84 E-value=2.2e+02 Score=32.76 Aligned_cols=49 Identities=20% Similarity=0.367 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 320 RAVTAELNKATKSLQEAADEECSLRNLVASLKLELEDVQKECAELKEKE 368 (582)
Q Consensus 320 ~s~~~ELeeaK~~Lek~~eE~~~l~~~v~SLr~ELek~K~el~~Lke~E 368 (582)
..+...|++....|..+.++...+...+.+|+.+-...+..+..++..-
T Consensus 375 S~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l 423 (560)
T PF06160_consen 375 SEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKL 423 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777777777777777777777777666666666665543
No 75
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=66.70 E-value=84 Score=27.04 Aligned_cols=66 Identities=15% Similarity=0.232 Sum_probs=45.9
Q ss_pred HhHHHHHHHHHHhHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 285 QLTENLEIQLAQTTEEIKVLQKQMKQAHAAEMDSMRAVTAELNKATKSLQEAADEECSLRNLVASLKLELEDVQKECAEL 364 (582)
Q Consensus 285 el~~~LE~kL~et~~~ie~Lq~el~~~~~~e~~sv~s~~~ELeeaK~~Lek~~eE~~~l~~~v~SLr~ELek~K~el~~L 364 (582)
++...||+|...+...|.. +++|+++.|..=.....+...++..=..|..+-.+.|.++..-
T Consensus 4 EvleqLE~KIqqAvdtI~L------------------LqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~W 65 (79)
T PRK15422 4 EVFEKLEAKVQQAIDTITL------------------LQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGW 65 (79)
T ss_pred HHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 4677788888776555555 5556666666666667777777777777888888887777766
Q ss_pred HHHH
Q 037857 365 KEKE 368 (582)
Q Consensus 365 ke~E 368 (582)
+++.
T Consensus 66 qerL 69 (79)
T PRK15422 66 QERL 69 (79)
T ss_pred HHHH
Confidence 5544
No 76
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=66.29 E-value=1.2e+02 Score=29.85 Aligned_cols=108 Identities=9% Similarity=0.148 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhHHHHHH
Q 037857 162 RKQQVDIAREHYAITASKIDAAKQELNRIRQDFDAALEAKHSALQQAAEAQRLAKVSSERVADLRKQLSAMKEGIKQIKL 241 (582)
Q Consensus 162 ~k~eLe~~r~qya~~~aeL~svk~EL~klr~e~~s~~eak~~A~~~a~ea~~~a~~~~~kveeLt~El~~lke~l~~~~~ 241 (582)
|+.+|..+.........-|.....+|..++..+..--..-.........-......-...+.++.+-+..+++++....+
T Consensus 79 l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l 158 (194)
T PF08614_consen 79 LQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQL 158 (194)
T ss_dssp -----------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555555555444433222222222222222233333444444555555555555555555
Q ss_pred HHHHHHHHHHHHHHhhhHhHHHHHHHHH
Q 037857 242 AAQEATDEQARIVSEKDTLMQSYKAAQE 269 (582)
Q Consensus 242 a~~eA~ee~~~i~~e~~~~~~~~~~~l~ 269 (582)
..-..++....+..+.......|-..+.
T Consensus 159 ~~~~~e~k~~~l~~En~~Lv~Rwm~~k~ 186 (194)
T PF08614_consen 159 QLNMLEEKLRKLEEENRELVERWMQRKA 186 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555566666666666666666655543
No 77
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=66.22 E-value=3.6 Score=48.46 Aligned_cols=40 Identities=28% Similarity=0.332 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 037857 416 AVIKEEAEHLKQAAEAARMLAKEAEKNLQLALSEVEQAKA 455 (582)
Q Consensus 416 e~~~~E~~k~k~E~e~~ka~~~t~E~rL~aa~kE~EAaka 455 (582)
..+..++..++..+...+..+.-.+.+...+.+|++..|+
T Consensus 381 ~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~ 420 (722)
T PF05557_consen 381 EQLLKEIEELEASLEALKKLIRRLERQKALATKERDYLRA 420 (722)
T ss_dssp ----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555666666677788888888887773
No 78
>PRK09039 hypothetical protein; Validated
Probab=65.60 E-value=2e+02 Score=31.05 Aligned_cols=49 Identities=16% Similarity=0.224 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 160 VERKQQVDIAREHYAITASKIDAAKQELNRIRQDFDAALEAKHSALQQA 208 (582)
Q Consensus 160 ~a~k~eLe~~r~qya~~~aeL~svk~EL~klr~e~~s~~eak~~A~~~a 208 (582)
.....+|...+..|+..-..+...+++|..|+.+++.+-.+=+.+..+-
T Consensus 119 ~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~ 167 (343)
T PRK09039 119 GELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRD 167 (343)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788899999999999999999999999999776655544444333
No 79
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=65.26 E-value=2.8e+02 Score=32.49 Aligned_cols=72 Identities=10% Similarity=0.116 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037857 80 LLLARKEIERTKKLLESSESTRARALGDLERAKRTMLELTTKLKAVKDSKESAIAAAEHVRKQAKQLEEAKSQ 152 (582)
Q Consensus 80 L~~aqeel~k~keql~~aE~~K~qal~ELe~aKr~veeL~~kLe~a~~~~~~A~e~sE~~k~r~~ElEq~~~~ 152 (582)
++.+..+|..|...... +..-..++.+++.....+.++..+++.............+.+..+..++++....
T Consensus 184 ~~~L~~dl~~~~~~~~~-~~~~~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~ 255 (650)
T TIGR03185 184 IDRLAGDLTNVLRRRKK-SELPSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRS 255 (650)
T ss_pred HHHHHHHHHHHHHHHHh-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66778888887766543 2234567778888888888888888877766666666677777777777665444
No 80
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=64.83 E-value=3.3e+02 Score=33.21 Aligned_cols=80 Identities=14% Similarity=0.267 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhHHHHHHH-------HHHHHHHHHHHHHhhh
Q 037857 186 ELNRIRQDFDAALEAKHSALQQAAEAQRLAKVSSERVADLRKQLSAMKEGIKQIKLA-------AQEATDEQARIVSEKD 258 (582)
Q Consensus 186 EL~klr~e~~s~~eak~~A~~~a~ea~~~a~~~~~kveeLt~El~~lke~l~~~~~a-------~~eA~ee~~~i~~e~~ 258 (582)
++.+...+++..+++...+..++ ....+...+.++.|..|+..+...+...... +..-..++.....++|
T Consensus 463 ~~~~~~~~L~d~le~~~~~~~~~---~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD 539 (980)
T KOG0980|consen 463 DVEEENTNLNDQLEELQRAAGRA---ETKTESQAKALESLRQELALLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKD 539 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhH
Confidence 34444444555555544444333 3567777788888888777766665554222 2222234445555666
Q ss_pred HhHHHHHHHH
Q 037857 259 TLMQSYKAAQ 268 (582)
Q Consensus 259 ~~~~~~~~~l 268 (582)
.........+
T Consensus 540 ~~~~~~~~~~ 549 (980)
T KOG0980|consen 540 RLAAELVARE 549 (980)
T ss_pred HHHHHHHHHH
Confidence 5444444444
No 81
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=63.68 E-value=2.9e+02 Score=32.26 Aligned_cols=43 Identities=28% Similarity=0.346 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 318 SMRAVTAELNKATKSLQEAADEECSLRNLVASLKLELEDVQKECAELKEKE 368 (582)
Q Consensus 318 sv~s~~~ELeeaK~~Lek~~eE~~~l~~~v~SLr~ELek~K~el~~Lke~E 368 (582)
.|..+..+|+.....|+.++..+... +.-+..|.+|.-|+..+
T Consensus 318 qI~~le~~l~~~~~~leel~~kL~~~--------sDYeeIK~ELsiLk~ie 360 (629)
T KOG0963|consen 318 QISALEKELKAKISELEELKEKLNSR--------SDYEEIKKELSILKAIE 360 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh--------ccHHHHHHHHHHHHHhh
Confidence 34556666666666666666665554 34455666666666654
No 82
>PRK04863 mukB cell division protein MukB; Provisional
Probab=62.13 E-value=4.7e+02 Score=34.08 Aligned_cols=351 Identities=12% Similarity=0.154 Sum_probs=160.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH--HHHHHHHHHHHHHhh
Q 037857 79 QLLLARKEIERTKKLLESSESTRARALGDLERAKRTMLELTTKLKAVKDSKESAIA----AAE--HVRKQAKQLEEAKSQ 152 (582)
Q Consensus 79 qL~~aqeel~k~keql~~aE~~K~qal~ELe~aKr~veeL~~kLe~a~~~~~~A~e----~sE--~~k~r~~ElEq~~~~ 152 (582)
+....+....++...+...+.-..++-..+..-...+..|..+++.+..-.....+ ..+ .......++....
T Consensus 287 EAag~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeELee~L-- 364 (1486)
T PRK04863 287 EALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERL-- 364 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 33556677777777777777777777777777777777777777766633332221 111 1111122221111
Q ss_pred hccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------
Q 037857 153 KNIGGIAVERKQQVDIAREHYAITASKIDAAKQELNRIRQDFDAALEAKHSALQQAA----------------------- 209 (582)
Q Consensus 153 ~~~~~~e~a~k~eLe~~r~qya~~~aeL~svk~EL~klr~e~~s~~eak~~A~~~a~----------------------- 209 (582)
......+...+.++...-.++....+++..++.++.......+....++.
T Consensus 365 -------ee~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~~Sd 437 (1486)
T PRK04863 365 -------EEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTA 437 (1486)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCH
Confidence 22334444444555555555555555555555554443333333222221
Q ss_pred -HHHHHHHHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhh----HhHHHHHHHHHHHHHHHHHHhhhccH
Q 037857 210 -EAQRLAKVSSERVADLRKQLSAMKEGIKQIKLAAQEATDEQARIVSEKD----TLMQSYKAAQEAAENKLNSLKKEYDP 284 (582)
Q Consensus 210 -ea~~~a~~~~~kveeLt~El~~lke~l~~~~~a~~eA~ee~~~i~~e~~----~~~~~~~~~l~e~e~~l~~Lk~el~~ 284 (582)
+.......-..++.+++.++..++..+..+..+..+-.+....+..... ..+..|-..+- .....++...
T Consensus 438 EeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gkv~~~~a~~~~~~~~---~~~~~~~~~~-- 512 (1486)
T PRK04863 438 DNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWDVARELL---RRLREQRHLA-- 512 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHH---HHhHHHHHHH--
Confidence 2222333344566666666666666666664444333333322221111 11111111111 1111111110
Q ss_pred HhHHHHHHHHHHhHHHH------HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 285 QLTENLEIQLAQTTEEI------KVLQKQMKQAHAAEMDSMRAVTAELNKATKSLQEAADEECSLRNLVASLKLELEDVQ 358 (582)
Q Consensus 285 el~~~LE~kL~et~~~i------e~Lq~el~~~~~~e~~sv~s~~~ELeeaK~~Lek~~eE~~~l~~~v~SLr~ELek~K 358 (582)
.-...|..+|.+.-..+ ..|-.++........++...+.....+....|+.+.+....+..-...++-.+++..
T Consensus 513 ~~~~~~~~~~~~l~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~qL~ 592 (1486)
T PRK04863 513 EQLQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQ 592 (1486)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222333333221111 112222222111122233444455566666777777777777777888888888888
Q ss_pred HHHHHHHHHHHHHHHHhHHhHHHHhhhhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 037857 359 KECAELKEKEAEMEVIKGALMESIAKESAVECEDSLNEHKLELEKLSAETETAMKEEAVIKEEAEHLKQAAEAARMLAKE 438 (582)
Q Consensus 359 ~el~~Lke~E~~a~~~~~~eL~~~kse~a~~~~e~~~~l~~~lqql~~Eae~ak~eae~~~~E~~k~k~E~e~~ka~~~t 438 (582)
..+..+...-..=+.. ...|.+.+.-+- ...+.-..+...||++-..--.+..+..........+...++.--..-.-
T Consensus 593 ~~i~~l~~~ap~W~~a-~~al~~L~eq~g-~~~~~~~~v~~~mq~~~~~~~~~~~~~~~~~~~~~~L~~~i~~l~~~~~g 670 (1486)
T PRK04863 593 ARIQRLAARAPAWLAA-QDALARLREQSG-EEFEDSQDVTEYMQQLLERERELTVERDELAARKQALDEEIERLSQPGGS 670 (1486)
T ss_pred HHHHHHHHhChHHHhh-HHHHHHHHHhcc-hhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCC
Confidence 8877775533200110 233333322210 00010123445555555554555555666666666666666654333333
Q ss_pred HHHHHHH
Q 037857 439 AEKNLQL 445 (582)
Q Consensus 439 ~E~rL~a 445 (582)
...+|..
T Consensus 671 ~~~~l~~ 677 (1486)
T PRK04863 671 EDPRLNA 677 (1486)
T ss_pred ccHHHHH
Confidence 3344444
No 83
>PRK10884 SH3 domain-containing protein; Provisional
Probab=61.86 E-value=48 Score=33.34 Aligned_cols=19 Identities=16% Similarity=0.288 Sum_probs=12.1
Q ss_pred CCCCCCCcccccccCCCcc
Q 037857 22 SSGSPRGEVGEIDTRAPFQ 40 (582)
Q Consensus 22 ~~~~~~~~~~~iDt~apf~ 40 (582)
+++..-+..|.|+...|+.
T Consensus 39 GPg~~y~Iv~~l~~G~~v~ 57 (206)
T PRK10884 39 GPGDQYRIVGTLNAGEEVT 57 (206)
T ss_pred CCCCCCceEEEEcCCCEEE
Confidence 4444455667788777765
No 84
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=61.40 E-value=2.5e+02 Score=30.69 Aligned_cols=104 Identities=18% Similarity=0.243 Sum_probs=56.6
Q ss_pred HhhhHhHHHHHHHHHHHHHHHHHHhhhccHHhHHHHHHHHHHhHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHH
Q 037857 255 SEKDTLMQSYKAAQEAAENKLNSLKKEYDPQLTENLEIQLAQTTEEIKVLQKQMKQAHAAEMDSMRAVTAELNKATKSLQ 334 (582)
Q Consensus 255 ~e~~~~~~~~~~~l~e~e~~l~~Lk~el~~el~~~LE~kL~et~~~ie~Lq~el~~~~~~e~~sv~s~~~ELeeaK~~Le 334 (582)
.+...+...|+.+++-.--.| |.-+.+. .+||=.-|..+......+...+..++. .+..+- .+....|+
T Consensus 187 ~es~vd~~eWklEvERV~PqL---Kv~~~~d-~kDWR~hleqm~~~~~~I~~~~~~~~~----~L~kl~---~~i~~~le 255 (359)
T PF10498_consen 187 IESKVDPAEWKLEVERVLPQL---KVTIRAD-AKDWRSHLEQMKQHKKSIESALPETKS----QLDKLQ---QDISKTLE 255 (359)
T ss_pred ccccCCHHHHHHHHHHHhhhh---eeeccCC-cchHHHHHHHHHHHHHHHHHhhhHHHH----HHHHHH---HHHHHHHH
Confidence 444556677777665544443 4322111 366666554432222222222211110 111111 34556777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 335 EAADEECSLRNLVASLKLELEDVQKECAELKEKEA 369 (582)
Q Consensus 335 k~~eE~~~l~~~v~SLr~ELek~K~el~~Lke~E~ 369 (582)
++......+..-+.+|..+.-..+.++..++++-+
T Consensus 256 kI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~ 290 (359)
T PF10498_consen 256 KIESREKYINNQLEPLIQEYRSAQDELSEVQEKYK 290 (359)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888888888888888888888777554
No 85
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=61.13 E-value=1.8e+02 Score=28.91 Aligned_cols=50 Identities=10% Similarity=0.149 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 77 ETQLLLARKEIERTKKLLESSESTRARALGDLERAKRTMLELTTKLKAVK 126 (582)
Q Consensus 77 e~qL~~aqeel~k~keql~~aE~~K~qal~ELe~aKr~veeL~~kLe~a~ 126 (582)
...|.-++..+.+++..+...-+.+.+...++..+.+.+..+..+...|.
T Consensus 29 ~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al 78 (221)
T PF04012_consen 29 EQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELAL 78 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677789999999999999999999999999999999999998888776
No 86
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=61.04 E-value=2.8e+02 Score=31.22 Aligned_cols=37 Identities=14% Similarity=0.131 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhccHHhHHHHHHHHHHhHH
Q 037857 262 QSYKAAQEAAENKLNSLKKEYDPQLTENLEIQLAQTTE 299 (582)
Q Consensus 262 ~~~~~~l~e~e~~l~~Lk~el~~el~~~LE~kL~et~~ 299 (582)
..|...+.+.+..........| +...||+.+|-..|-
T Consensus 413 ~vw~~kl~~~~e~~~~~~~s~d-~~I~dLqEQlrDlmf 449 (493)
T KOG0804|consen 413 DVWRGKLKELEEREKEALGSKD-EKITDLQEQLRDLMF 449 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhHhe
Confidence 4566666666666665555553 345555555544443
No 87
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=60.57 E-value=2.4e+02 Score=30.14 Aligned_cols=117 Identities=21% Similarity=0.197 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHhHHHHhhhhhHhhhhhhhHHHHH
Q 037857 322 VTAELNKATKSLQEAADEECSLRNLVASLKLELEDVQKECAELKEKEAEMEVIK-GALMESIAKESAVECEDSLNEHKLE 400 (582)
Q Consensus 322 ~~~ELeeaK~~Lek~~eE~~~l~~~v~SLr~ELek~K~el~~Lke~E~~a~~~~-~~eL~~~kse~a~~~~e~~~~l~~~ 400 (582)
+...++..+.....+......+...+..|.......+.++..|+..... +... ..+|.. +...
T Consensus 154 L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e-~~~~D~~eL~~---------------lr~e 217 (325)
T PF08317_consen 154 LEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEE-IESCDQEELEA---------------LRQE 217 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhcCHHHHHH---------------HHHH
Confidence 3444455555555555666666666666666666666666666554321 1111 333333 3344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 037857 401 LEKLSAETETAMKEEAVIKEEAEHLKQAAEAARMLAKEAEKNLQLALSEVEQAK 454 (582)
Q Consensus 401 lqql~~Eae~ak~eae~~~~E~~k~k~E~e~~ka~~~t~E~rL~aa~kE~EAak 454 (582)
|..+..+.+.-++....++.++..+...++............+..+.+-.+..+
T Consensus 218 L~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r 271 (325)
T PF08317_consen 218 LAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECR 271 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444445555555555555666666666666666666655555555555555444
No 88
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=57.48 E-value=1.4e+02 Score=29.43 Aligned_cols=50 Identities=24% Similarity=0.316 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 318 SMRAVTAELNKATKSLQEAADEECSLRNLVASLKLELEDVQKECAELKEK 367 (582)
Q Consensus 318 sv~s~~~ELeeaK~~Lek~~eE~~~l~~~v~SLr~ELek~K~el~~Lke~ 367 (582)
.+.....+|.+-...++.+.||...|+.-+..|...+.+.+.+...|-++
T Consensus 131 ~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~R 180 (194)
T PF08614_consen 131 KIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVER 180 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888899999999999999999999999999988888877553
No 89
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=54.00 E-value=4.2e+02 Score=31.00 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 344 RNLVASLKLELEDVQKECAELKEKE 368 (582)
Q Consensus 344 ~~~v~SLr~ELek~K~el~~Lke~E 368 (582)
...+..|..++.....++..+..+-
T Consensus 390 ~~~~~~~~~~~~~~e~el~~l~~~l 414 (650)
T TIGR03185 390 QDAKSQLLKELRELEEELAEVDKKI 414 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555544
No 90
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=52.56 E-value=3.8e+02 Score=30.03 Aligned_cols=69 Identities=19% Similarity=0.226 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 78 TQLLLARKEIERTKKLLESSESTRARALGDLERAKRTMLELTTKLKAVKDSKESAIAAAEHVRKQAKQL 146 (582)
Q Consensus 78 ~qL~~aqeel~k~keql~~aE~~K~qal~ELe~aKr~veeL~~kLe~a~~~~~~A~e~sE~~k~r~~El 146 (582)
.+|+.+|.+|.+....+........++..+|...+..+..+.+.|-.+........++......++..+
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l 106 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNAL 106 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHH
Confidence 578889999999999999999999999999999999999999998888766666665555555554444
No 91
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.23 E-value=1.4e+02 Score=25.11 Aligned_cols=66 Identities=18% Similarity=0.262 Sum_probs=47.2
Q ss_pred HhHHHHHHHHHHhHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 285 QLTENLEIQLAQTTEEIKVLQKQMKQAHAAEMDSMRAVTAELNKATKSLQEAADEECSLRNLVASLKLELEDVQKECAEL 364 (582)
Q Consensus 285 el~~~LE~kL~et~~~ie~Lq~el~~~~~~e~~sv~s~~~ELeeaK~~Lek~~eE~~~l~~~v~SLr~ELek~K~el~~L 364 (582)
+....||.|+..+...|.. +.+|+++.|..=.....|+..++..-+.|..|-+++|.++..-
T Consensus 4 Ev~ekLE~KiqqAvdTI~L------------------LQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~W 65 (79)
T COG3074 4 EVFEKLEAKVQQAIDTITL------------------LQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGW 65 (79)
T ss_pred HHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677776655444444 5666677777777778888888888889999988888888776
Q ss_pred HHHH
Q 037857 365 KEKE 368 (582)
Q Consensus 365 ke~E 368 (582)
+++-
T Consensus 66 Qerl 69 (79)
T COG3074 66 QERL 69 (79)
T ss_pred HHHH
Confidence 6654
No 92
>PRK10884 SH3 domain-containing protein; Provisional
Probab=52.16 E-value=2.6e+02 Score=28.11 Aligned_cols=41 Identities=7% Similarity=0.154 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 328 KATKSLQEAADEECSLRNLVASLKLELEDVQKECAELKEKE 368 (582)
Q Consensus 328 eaK~~Lek~~eE~~~l~~~v~SLr~ELek~K~el~~Lke~E 368 (582)
.....+..+..+-..|......++.+++..+.++..++...
T Consensus 129 ~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~ 169 (206)
T PRK10884 129 QSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTI 169 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444445555555555555555555555444
No 93
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=52.07 E-value=4.3e+02 Score=30.50 Aligned_cols=111 Identities=14% Similarity=0.158 Sum_probs=70.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037857 72 NVLDKETQLLLARKEIERTKKLLESSESTRARALGDLERAKRTMLELTTKLKAVKDSKESAIAAAEHVRKQAKQLEEAKS 151 (582)
Q Consensus 72 ~v~~~e~qL~~aqeel~k~keql~~aE~~K~qal~ELe~aKr~veeL~~kLe~a~~~~~~A~e~sE~~k~r~~ElEq~~~ 151 (582)
+..+++..|.-+...+.+|+=.. |-..=..+-+-|..+...+..+...|.....+...-.......+-+..+|...+.
T Consensus 80 ~~~~ie~~l~~ae~~~~~~~f~~--a~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll 157 (569)
T PRK04778 80 SLPDIEEQLFEAEELNDKFRFRK--AKHEINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLL 157 (569)
T ss_pred hhhhHHHHHHHHHHHHhcccHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777777777665333 3333345566677777777777777777776666666666666666666655443
Q ss_pred hhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 152 QKNIGGIAVERKQQVDIAREHYAITASKIDAAKQELNRIRQDFDAALEA 200 (582)
Q Consensus 152 ~~~~~~~e~a~k~eLe~~r~qya~~~aeL~svk~EL~klr~e~~s~~ea 200 (582)
.-+..|..++..|..--.+|..--.+|..+.+.
T Consensus 158 ----------------~~~~~~G~a~~~le~~l~~~e~~f~~f~~l~~~ 190 (569)
T PRK04778 158 ----------------ANRFSFGPALDELEKQLENLEEEFSQFVELTES 190 (569)
T ss_pred ----------------hcCccccchHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 223567778777777777776666666555443
No 94
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=51.61 E-value=2.6e+02 Score=27.83 Aligned_cols=81 Identities=19% Similarity=0.190 Sum_probs=38.7
Q ss_pred cccCC-CcccHHHHHHhhchhhhcccCCCcchhhccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 33 IDTRA-PFQSVKAAVSLFGEVKLANNKNKPLFRRTRLSSENVLDKETQLLLARKEIERTKKLLESSESTRARALGDLERA 111 (582)
Q Consensus 33 iDt~a-pf~SVk~Avs~FG~~~~~k~~~~~~~~r~~~~~e~v~~~e~qL~~aqeel~k~keql~~aE~~K~qal~ELe~a 111 (582)
|||.. -|++-..+.+-|-+-+++ +.-+-.|- .+...+........+++..+..++...+..+.+...++..-
T Consensus 64 idd~~~~f~~~~~tl~~LE~~GFn--V~~l~~RL-----~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~L 136 (190)
T PF05266_consen 64 IDDSRSSFESLMKTLSELEEHGFN--VKFLRSRL-----NKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKEL 136 (190)
T ss_pred cCCcHHHHHHHHHHHHHHHHcCCc--cHHHHHHH-----HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 55544 677777777777776676 33221111 12222233334444555555555555544444444444444
Q ss_pred HHHHHHHHH
Q 037857 112 KRTMLELTT 120 (582)
Q Consensus 112 Kr~veeL~~ 120 (582)
...+.+|..
T Consensus 137 e~ki~el~~ 145 (190)
T PF05266_consen 137 EMKILELQR 145 (190)
T ss_pred HHHHHHHHH
Confidence 444444333
No 95
>cd07679 F-BAR_PACSIN2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 2 (PACSIN2). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 2 or Syndapin II is expressed ubiquitously and is involved in the regulation of tubulin polymerization. It associates with Golgi membranes and forms a complex with dynamin II which is crucial in promoting vesicle formation from the trans-Golgi network. PACSIN 2 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave su
Probab=51.15 E-value=3.1e+02 Score=28.67 Aligned_cols=139 Identities=12% Similarity=0.169 Sum_probs=66.4
Q ss_pred cccccccCCCcccHHHHHHhhchhhhcccCCCcchhhccccchhhhhHHHHH--HHHHHHHHHHHH--------HHHHHH
Q 037857 29 EVGEIDTRAPFQSVKAAVSLFGEVKLANNKNKPLFRRTRLSSENVLDKETQL--LLARKEIERTKK--------LLESSE 98 (582)
Q Consensus 29 ~~~~iDt~apf~SVk~Avs~FG~~~~~k~~~~~~~~r~~~~~e~v~~~e~qL--~~aqeel~k~ke--------ql~~aE 98 (582)
-+|.||+.|-++|++.|..-|-+-+. +++.+-.+| .+..+++.+++. +.-..=
T Consensus 49 w~~~ie~gpeyGTl~~aw~~~~~Eae-----------------~~s~~H~~l~~~L~~e~~e~ir~wQKe~~hk~~~~~~ 111 (258)
T cd07679 49 WRQLVEKGPQYGTVEKAWCALMSEAE-----------------KVSELHLEVKASLMNEDFEKIKNWQKEAFHKQMMGGF 111 (258)
T ss_pred HHhccccCCccchHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45788988888999998765554322 333333333 222223343322 111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHHH
Q 037857 99 STRARALGDLERAKRTMLELTTKLKAVKDSKESAIAAAEHVRKQAKQLEEAKSQKNIGGIAVERKQQVDIAREHYAITAS 178 (582)
Q Consensus 99 ~~K~qal~ELe~aKr~veeL~~kLe~a~~~~~~A~e~sE~~k~r~~ElEq~~~~~~~~~~e~a~k~eLe~~r~qya~~~a 178 (582)
...-.+.+-.++|++-=.-+-.+++.+...=.+++.+...+..+... +. .+++++. .+....-.
T Consensus 112 Ke~k~~e~~f~KaQKpw~k~~kkv~~aKk~Y~~aCk~e~~A~~~~~~---~~-~d~~~~~------------~q~~K~~~ 175 (258)
T cd07679 112 KETKEAEDGFRKAQKPWAKKLKEVEAAKKAYHTACKEEKLATSREAN---SK-ADPALNP------------EQLKKLQD 175 (258)
T ss_pred HHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh---cc-cCCcCCH------------HHHHHHHH
Confidence 11123455555555555555555555555445555444444333211 11 1111211 22233334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 037857 179 KIDAAKQELNRIRQDFDAALEA 200 (582)
Q Consensus 179 eL~svk~EL~klr~e~~s~~ea 200 (582)
-|.-++++..+.+..|..+|+.
T Consensus 176 k~~k~~~~~~k~~~~Y~~~l~~ 197 (258)
T cd07679 176 KVEKCKQDVLKTKEKYEKSLKE 197 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666555
No 96
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=50.35 E-value=5.1e+02 Score=30.92 Aligned_cols=20 Identities=15% Similarity=0.365 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 037857 104 ALGDLERAKRTMLELTTKLK 123 (582)
Q Consensus 104 al~ELe~aKr~veeL~~kLe 123 (582)
+-.||...+-.=.||..+|.
T Consensus 430 LraeLq~~Rq~E~ELRsqis 449 (697)
T PF09726_consen 430 LRAELQSSRQSEQELRSQIS 449 (697)
T ss_pred HHHHHHhhhhhHHHHHHHHh
Confidence 44455555555555666644
No 97
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=48.94 E-value=3.6e+02 Score=28.77 Aligned_cols=48 Identities=31% Similarity=0.373 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 321 AVTAELNKATKSLQEAADEECSLRNLVASLKLELEDVQKECAELKEKE 368 (582)
Q Consensus 321 s~~~ELeeaK~~Lek~~eE~~~l~~~v~SLr~ELek~K~el~~Lke~E 368 (582)
.+..+|...+..-.....++..+..--..|..||.....+...+.+.+
T Consensus 47 ~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE 94 (314)
T PF04111_consen 47 ELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEE 94 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555555555555554433
No 98
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=48.24 E-value=2.9e+02 Score=27.49 Aligned_cols=103 Identities=17% Similarity=0.235 Sum_probs=0.0
Q ss_pred HHHhhhHhHHHHHHHHHHHHHHHHHHhhhccH---------HhHHHHHHHHHHhHHHHHHHHHHHHHHhHhhHHHHHHHH
Q 037857 253 IVSEKDTLMQSYKAAQEAAENKLNSLKKEYDP---------QLTENLEIQLAQTTEEIKVLQKQMKQAHAAEMDSMRAVT 323 (582)
Q Consensus 253 i~~e~~~~~~~~~~~l~e~e~~l~~Lk~el~~---------el~~~LE~kL~et~~~ie~Lq~el~~~~~~e~~sv~s~~ 323 (582)
++..+......|+..+.+++..+......|-. ..+......+......+...+.-+..+. ..+....
T Consensus 61 aL~GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~----~~a~~AQ 136 (188)
T PF05335_consen 61 ALAGKQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAE----QVAEGAQ 136 (188)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 324 AELNKATKSLQEAADEECSLRNLVASLKLELEDVQK 359 (582)
Q Consensus 324 ~ELeeaK~~Lek~~eE~~~l~~~v~SLr~ELek~K~ 359 (582)
.+|.+-...|+.++..+..|...+.+.+.+++++|.
T Consensus 137 ~el~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~~tk~ 172 (188)
T PF05335_consen 137 QELAEKTQLLEAAKRRVEELQRQLQAARADYEKTKK 172 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 99
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=46.23 E-value=22 Score=42.01 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=13.6
Q ss_pred CCccccHHhhHHhhHHHHHHH
Q 037857 475 SNITISKEEFDSLNKAVEESV 495 (582)
Q Consensus 475 ~~Itis~eEye~L~~ka~eaE 495 (582)
..+..+.++|..|..++..-+
T Consensus 496 ~~~~~~~e~~~~L~~~~~~Le 516 (722)
T PF05557_consen 496 RSLSSLSEELNELQKEIEELE 516 (722)
T ss_dssp CCCCHHHHHHHHHHHHHHHHH
T ss_pred chhhhhHHHHHHHHHHHHHHH
Confidence 345666677777777766444
No 100
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=45.74 E-value=1.8e+02 Score=24.41 Aligned_cols=64 Identities=22% Similarity=0.338 Sum_probs=33.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhHhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 289 NLEIQLAQTTEEIKVLQKQMKQAHAAEM---DSMRAVTAELNKATKSLQEAADEECSLRNLVASLKL 352 (582)
Q Consensus 289 ~LE~kL~et~~~ie~Lq~el~~~~~~e~---~sv~s~~~ELeeaK~~Lek~~eE~~~l~~~v~SLr~ 352 (582)
+|+.+|.+--..|..|+.+.+..-..+. ..+..+.....+....+.............+.+|+.
T Consensus 2 sl~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~ 68 (74)
T PF12329_consen 2 SLEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEE 68 (74)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666677777777665444433 234444444444444444444444444444444443
No 101
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=45.21 E-value=3.9e+02 Score=28.10 Aligned_cols=49 Identities=29% Similarity=0.416 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 318 SMRAVTAELNKATKSLQEAADEECSLRNLVASLKLELEDVQKECAELKE 366 (582)
Q Consensus 318 sv~s~~~ELeeaK~~Lek~~eE~~~l~~~v~SLr~ELek~K~el~~Lke 366 (582)
++..+..++...+..|..+..+...|-..+..-+.||++.+..|..|+.
T Consensus 170 ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~ 218 (267)
T PF10234_consen 170 AIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQS 218 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5677788888888888888888888888888888888888888888764
No 102
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=44.48 E-value=7.4 Score=45.90 Aligned_cols=30 Identities=17% Similarity=0.193 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 037857 424 HLKQAAEAARMLAKEAEKNLQLALSEVEQA 453 (582)
Q Consensus 424 k~k~E~e~~ka~~~t~E~rL~aa~kE~EAa 453 (582)
+.+.-++.+|..|.+.+.++..+..++.+.
T Consensus 598 r~k~~lekak~vi~~Ld~k~~~~~~e~~~L 627 (713)
T PF05622_consen 598 RYKKYLEKAKEVIKTLDPKQNPSSPEIQAL 627 (713)
T ss_dssp ------------------------------
T ss_pred HHHHHHHHHHHHhhccChhccCChHHHHHH
Confidence 334445555555666666655544444333
No 103
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=43.17 E-value=3.4e+02 Score=26.81 Aligned_cols=51 Identities=18% Similarity=0.327 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 299 EEIKVLQKQMKQAHAAEMDSMRAVTAELNKATKSLQEAADEECSLRNLVAS 349 (582)
Q Consensus 299 ~~ie~Lq~el~~~~~~e~~sv~s~~~ELeeaK~~Lek~~eE~~~l~~~v~S 349 (582)
..+..|+.++......|...+...+.++..++..+..-+|-.+.+..-+..
T Consensus 117 ~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~~~~~anrwTDNI~~l~~~~~~ 167 (188)
T PF03962_consen 117 KELKELKKELEKYSENDPEKIEKLKEEIKIAKEAANRWTDNIFSLKSYLKK 167 (188)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 344667777777777777788888888888888888888888877766554
No 104
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=40.84 E-value=6.2e+02 Score=29.15 Aligned_cols=22 Identities=5% Similarity=0.274 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 037857 84 RKEIERTKKLLESSESTRARAL 105 (582)
Q Consensus 84 qeel~k~keql~~aE~~K~qal 105 (582)
-+.+..+.+++...|.+|...+
T Consensus 308 ~qqV~qs~EKIa~LEqEKEHw~ 329 (518)
T PF10212_consen 308 AQQVQQSQEKIAKLEQEKEHWM 329 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555544
No 105
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=38.07 E-value=5.8e+02 Score=27.99 Aligned_cols=124 Identities=21% Similarity=0.294 Sum_probs=68.2
Q ss_pred cccccCCCcccHHHHHHhhchhhhcccCCCcchhhccccchhhhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Q 037857 31 GEIDTRAPFQSVKAAVSLFGEVKLANNKNKPLFRRTRLSSENVLDKETQLLLARKEIERTK-------KLLESSESTRAR 103 (582)
Q Consensus 31 ~~iDt~apf~SVk~Avs~FG~~~~~k~~~~~~~~r~~~~~e~v~~~e~qL~~aqeel~k~k-------eql~~aE~~K~q 103 (582)
|..+-.-||--...-.-..|+..+ +++ .++-.+ .+|+.+..=+..|| -+|.++|+--.+
T Consensus 53 GK~NinDP~~ALqRDf~~l~Ek~D---~EK-----~p~ct~------spl~iL~~mM~qcKnmQe~~~s~LaAaE~khrK 118 (561)
T KOG1103|consen 53 GKLNINDPFAALQRDFAILGEKID---EEK-----IPQCTE------SPLDILDKMMAQCKNMQENAASLLAAAEKKHRK 118 (561)
T ss_pred cccccCChHHHHHHHHHHHhcccc---ccc-----cceecc------ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666788777777778888633 333 111111 12333333333332 457778888888
Q ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHH
Q 037857 104 ALGDLERAKR-------TMLELTTKLKAVKDSKESAIAAAEHVRKQAKQLEEAKSQKNIGGIAVERKQQVDIAREHYAIT 176 (582)
Q Consensus 104 al~ELe~aKr-------~veeL~~kLe~a~~~~~~A~e~sE~~k~r~~ElEq~~~~~~~~~~e~a~k~eLe~~r~qya~~ 176 (582)
++-+|+.-+. .-++|+--|++-. .+--|..|......+..|.+. .-+--+|+.-+.+|...
T Consensus 119 li~dLE~dRe~haqdaaeGDDlt~~LEKER---eqL~QQiEFe~~e~kK~E~~k---------~Kl~~qLeeEk~RHeqi 186 (561)
T KOG1103|consen 119 LIKDLEADREAHAQDAAEGDDLTAHLEKER---EQLQQQIEFEIEEKKKAEIAK---------DKLEMQLEEEKKRHEQI 186 (561)
T ss_pred HHHHHHHHHHHHhhhhhccchHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHH
Confidence 8888875432 2356777776544 444444454444444433321 12345677777788776
Q ss_pred HHHH
Q 037857 177 ASKI 180 (582)
Q Consensus 177 ~aeL 180 (582)
+..|
T Consensus 187 s~mL 190 (561)
T KOG1103|consen 187 SLML 190 (561)
T ss_pred HHHH
Confidence 6554
No 106
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=37.33 E-value=9.9e+02 Score=30.48 Aligned_cols=24 Identities=17% Similarity=0.134 Sum_probs=16.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhhc
Q 037857 259 TLMQSYKAAQEAAENKLNSLKKEY 282 (582)
Q Consensus 259 ~~~~~~~~~l~e~e~~l~~Lk~el 282 (582)
...-.|..++..+++++++++.+.
T Consensus 667 ~~e~~~e~~lk~~q~~~eq~~~E~ 690 (1317)
T KOG0612|consen 667 ALEIKLERKLKMLQNELEQENAEH 690 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567777777777777777765
No 107
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=37.27 E-value=4.4e+02 Score=26.43 Aligned_cols=169 Identities=14% Similarity=0.192 Sum_probs=98.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 037857 75 DKETQLLLARKEIERTKKLLESSESTRARALGDLERAKRTMLELTTKLKAVKDSKESAIAAAEHVRKQAKQLEEAKSQKN 154 (582)
Q Consensus 75 ~~e~qL~~aqeel~k~keql~~aE~~K~qal~ELe~aKr~veeL~~kLe~a~~~~~~A~e~sE~~k~r~~ElEq~~~~~~ 154 (582)
+++..=..++.+..+++..++.++-.-++...|+...++.+..+.+-|+. ++.--.|++.
T Consensus 12 dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~--------------aK~l~eEled------ 71 (193)
T PF14662_consen 12 DLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQK--------------AKALEEELED------ 71 (193)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHH------
Confidence 33444456888999999999999999999998888887777766433332 2222222221
Q ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Q 037857 155 IGGIAVERKQQVDIAREHYAITASKIDAAKQELNRIRQDFDAALEAKHSALQQAAEAQRLAKVSSERVADLRKQLSAMKE 234 (582)
Q Consensus 155 ~~~~e~a~k~eLe~~r~qya~~~aeL~svk~EL~klr~e~~s~~eak~~A~~~a~ea~~~a~~~~~kveeLt~El~~lke 234 (582)
+|.-+-...++|...++...-...|-+.|-.++..+-++...-....+ ...++..+|..+-+.++.
T Consensus 72 -------Lk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~-------~lk~~~~eL~~~~~~Lq~ 137 (193)
T PF14662_consen 72 -------LKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERD-------GLKKRSKELATEKATLQR 137 (193)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhh-------hHHHHHHHHHHhhHHHHH
Confidence 222233333455555555555555555555555555555444333333 334455666666666666
Q ss_pred hH-HHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHhhhc
Q 037857 235 GI-KQIKLAAQEATDEQARIVSEKDTLMQSYKAAQEAAENKLNSLKKEY 282 (582)
Q Consensus 235 ~l-~~~~~a~~eA~ee~~~i~~e~~~~~~~~~~~l~e~e~~l~~Lk~el 282 (582)
-+ ..-++.+ ++-.++.++......+...+++...-.+.||.+.
T Consensus 138 Ql~~~e~l~~-----~~da~l~e~t~~i~eL~~~ieEy~~~teeLR~e~ 181 (193)
T PF14662_consen 138 QLCEFESLIC-----QRDAILSERTQQIEELKKTIEEYRSITEELRLEK 181 (193)
T ss_pred HHHHHHHHHH-----HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 66 3323333 1223455666666677777777777777777664
No 108
>PRK04863 mukB cell division protein MukB; Provisional
Probab=37.06 E-value=1.1e+03 Score=30.90 Aligned_cols=15 Identities=27% Similarity=0.372 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHH
Q 037857 397 HKLELEKLSAETETA 411 (582)
Q Consensus 397 l~~~lqql~~Eae~a 411 (582)
+...+++|.......
T Consensus 584 ~r~~~~qL~~~i~~l 598 (1486)
T PRK04863 584 LRQQLEQLQARIQRL 598 (1486)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444443333
No 109
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=36.75 E-value=6.8e+02 Score=28.47 Aligned_cols=40 Identities=20% Similarity=0.291 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 324 AELNKATKSLQEAADEECSLRNLVASLKLELEDVQKECAE 363 (582)
Q Consensus 324 ~ELeeaK~~Lek~~eE~~~l~~~v~SLr~ELek~K~el~~ 363 (582)
.||+..+...+.++++...+..-+..|+.|+......+..
T Consensus 274 ~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~ 313 (511)
T PF09787_consen 274 IELEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEG 313 (511)
T ss_pred hcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6788888888888999888888888888888777666555
No 110
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=36.72 E-value=7.2e+02 Score=28.68 Aligned_cols=90 Identities=21% Similarity=0.284 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhHhHHH
Q 037857 184 KQELNRIRQDFDAALEAKHSALQQAAEAQRLAKVSSERVADLRKQLSAMKEGIKQIKLAAQEATDEQARIVSEKDTLMQS 263 (582)
Q Consensus 184 k~EL~klr~e~~s~~eak~~A~~~a~ea~~~a~~~~~kveeLt~El~~lke~l~~~~~a~~eA~ee~~~i~~e~~~~~~~ 263 (582)
.+||++.-.++...-++-..-+++..+.....+.+.-.+++|-.-|.+++...+....-+.+-+.+. -.
T Consensus 218 ~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDky-----------AE 286 (596)
T KOG4360|consen 218 QEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKY-----------AE 286 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-----------HH
Confidence 3444444455555555566667778888888888888888888888888888777655554433332 34
Q ss_pred HHHHHHHHHHHHHHHhhhccH
Q 037857 264 YKAAQEAAENKLNSLKKEYDP 284 (582)
Q Consensus 264 ~~~~l~e~e~~l~~Lk~el~~ 284 (582)
+...+.+++.+|+.|+.--.|
T Consensus 287 ~m~~~~EaeeELk~lrs~~~p 307 (596)
T KOG4360|consen 287 CMQMLHEAEEELKCLRSCDAP 307 (596)
T ss_pred HHHHHHHHHHHHHhhccCCCc
Confidence 667889999999999976443
No 111
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=36.08 E-value=8.9e+02 Score=29.60 Aligned_cols=87 Identities=15% Similarity=0.163 Sum_probs=48.6
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHhhhccHHhHHHHHHHHHHh
Q 037857 218 SSERVADLRKQLSAMKEGIKQIKLAAQEATDEQARIVSEKDTLMQSYKAAQEAAENKLNSLKKEYDPQLTENLEIQLAQT 297 (582)
Q Consensus 218 ~~~kveeLt~El~~lke~l~~~~~a~~eA~ee~~~i~~e~~~~~~~~~~~l~e~e~~l~~Lk~el~~el~~~LE~kL~et 297 (582)
-+..|.+|..+|..++...-.+-....+|.+=.-.-.++..........+|.++..+++.+... ..+||.+-..+
T Consensus 289 keelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadirc~LlEarrk~egfddk-----~~eLEKkrd~a 363 (1265)
T KOG0976|consen 289 KEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIRCALLEARRKAEGFDDK-----LNELEKKRDMA 363 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHH-----HHHHHHHHHHH
Confidence 3445666666666666555555444444443222222344455566677777777776666543 45677777666
Q ss_pred HHHHHHHHHHHH
Q 037857 298 TEEIKVLQKQMK 309 (582)
Q Consensus 298 ~~~ie~Lq~el~ 309 (582)
..++-.+|.-++
T Consensus 364 l~dvr~i~e~k~ 375 (1265)
T KOG0976|consen 364 LMDVRSIQEKKE 375 (1265)
T ss_pred HHhHHHHHHHHH
Confidence 666666655443
No 112
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=35.82 E-value=5.6e+02 Score=27.19 Aligned_cols=59 Identities=25% Similarity=0.322 Sum_probs=38.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 71 ENVLDKETQLLLARKEIERTKKLLESSESTRARALGDLERAKRTMLELTTKLKAVKDSKESAIAAA 136 (582)
Q Consensus 71 e~v~~~e~qL~~aqeel~k~keql~~aE~~K~qal~ELe~aKr~veeL~~kLe~a~~~~~~A~e~s 136 (582)
.++.+++.||+.+++|-..-+=|++..|.+ |.+.|+.+++-+...-....+-..-.+.+
T Consensus 18 qKIqelE~QldkLkKE~qQrQfQleSlEAa-------LqKQKqK~e~ek~e~s~LkREnq~l~e~c 76 (307)
T PF10481_consen 18 QKIQELEQQLDKLKKERQQRQFQLESLEAA-------LQKQKQKVEEEKNEYSALKRENQSLMESC 76 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-------HHHHHHHHHHHhhhhhhhhhhhhhHHHHH
Confidence 477788999999999998888888887765 44555555554444333333333333333
No 113
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=34.47 E-value=6.4e+02 Score=27.47 Aligned_cols=32 Identities=22% Similarity=0.315 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 163 KQQVDIAREHYAITASKIDAAKQELNRIRQDF 194 (582)
Q Consensus 163 k~eLe~~r~qya~~~aeL~svk~EL~klr~e~ 194 (582)
+.+++.++..|..+-+.|..++..|...+..+
T Consensus 157 ~~~ld~a~~~~~~a~a~l~~a~~~l~~~~~~~ 188 (390)
T PRK15136 157 REELQHARDAVASAQAQLDVAIQQYNANQAMI 188 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67888888888888888888887777665543
No 114
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=34.05 E-value=5.7e+02 Score=26.78 Aligned_cols=136 Identities=16% Similarity=0.208 Sum_probs=72.0
Q ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHH------
Q 037857 302 KVLQKQMKQAHAAEMDSMRAVTAELNKATKSLQEAADEECSLRNL-----------VASLKLELEDVQKECAEL------ 364 (582)
Q Consensus 302 e~Lq~el~~~~~~e~~sv~s~~~ELeeaK~~Lek~~eE~~~l~~~-----------v~SLr~ELek~K~el~~L------ 364 (582)
..++.+|....+..-..+..+..+|+..+..|.++.+|+..|.+. +..|...|.++|.....=
T Consensus 66 ~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~qqdEldel~e 145 (258)
T PF15397_consen 66 QQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDSQQDELDELNE 145 (258)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444456677788888888888888888877764 345555555555443221
Q ss_pred -HHHHHHH---HHHh-HHhHHHHhhh-hhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 037857 365 -KEKEAEM---EVIK-GALMESIAKE-SAVECEDSLNEHKLELEKLSAETETAMKEEAVIKEEAEHLKQAAEAARMLAK 437 (582)
Q Consensus 365 -ke~E~~a---~~~~-~~eL~~~kse-~a~~~~e~~~~l~~~lqql~~Eae~ak~eae~~~~E~~k~k~E~e~~ka~~~ 437 (582)
.+.+... .-.. ..++.++-+. .-..+......+...=+.+..+...++.....+++++..+++++++....+.
T Consensus 146 ~~~~el~~l~~~~q~k~~~il~~~~~k~~~~~~~~l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~~ 224 (258)
T PF15397_consen 146 MRQMELASLSRKIQEKKEEILSSAAEKTQSPMQPALLQRTLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQAQ 224 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 1111111 0001 2222222111 0011111111222233567778888888888888888888888887766544
No 115
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=34.00 E-value=6.2e+02 Score=27.12 Aligned_cols=54 Identities=17% Similarity=0.257 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 162 RKQQVDIAREHYAITASKIDAAKQELNRIRQDFDAALEAKHSALQQAAEAQRLA 215 (582)
Q Consensus 162 ~k~eLe~~r~qya~~~aeL~svk~EL~klr~e~~s~~eak~~A~~~a~ea~~~a 215 (582)
.+.+|......+..-...|....++|..+...+......+..-..+..++.+..
T Consensus 209 lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~ 262 (312)
T smart00787 209 AKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKL 262 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555555555666665555555555555555555554433
No 116
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=33.38 E-value=4e+02 Score=25.92 Aligned_cols=69 Identities=19% Similarity=0.234 Sum_probs=44.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 72 NVLDKETQLLLARKEIERTKKLLESSESTRARA-LGDLERAKRTMLELTTKLKAVKDSKESAIAAAEHVRKQAKQLE 147 (582)
Q Consensus 72 ~v~~~e~qL~~aqeel~k~keql~~aE~~K~qa-l~ELe~aKr~veeL~~kLe~a~~~~~~A~e~sE~~k~r~~ElE 147 (582)
++..+-.++...++.+...+.|...+.....+. ..+....+..+++|+.+|+.+ ..+.+..+.|++.+.
T Consensus 119 r~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~~-------~~~~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 119 RVHSLIKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEKK-------EKEIEALKKQSEGLQ 188 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 344555678888888888888887765544443 356666677788888877763 344555555554443
No 117
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=32.78 E-value=8.2e+02 Score=28.22 Aligned_cols=46 Identities=24% Similarity=0.328 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 318 SMRAVTAELNKATKSLQEAADEECSLRNLVASLKLELEDVQKECAE 363 (582)
Q Consensus 318 sv~s~~~ELeeaK~~Lek~~eE~~~l~~~v~SLr~ELek~K~el~~ 363 (582)
.+.+...+|......+-.-.+|...|.+-+.+|..++.-..-+...
T Consensus 213 q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekee 258 (596)
T KOG4360|consen 213 QARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEE 258 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3455555555555555555555555555555555544443333333
No 118
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=32.75 E-value=3e+02 Score=23.14 Aligned_cols=26 Identities=35% Similarity=0.483 Sum_probs=18.5
Q ss_pred HhHHHHHHHHHHhHHHHHHHHHHHHH
Q 037857 285 QLTENLEIQLAQTTEEIKVLQKQMKQ 310 (582)
Q Consensus 285 el~~~LE~kL~et~~~ie~Lq~el~~ 310 (582)
++...||.|...+...|..|+.++..
T Consensus 4 E~l~~LE~ki~~aveti~~Lq~e~ee 29 (72)
T PF06005_consen 4 ELLEQLEEKIQQAVETIALLQMENEE 29 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888777777776666543
No 119
>cd07681 F-BAR_PACSIN3 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 3 (PACSIN3). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 3 or Syndapin III is expressed ubiquitously and regulates glucose uptake in adipocytes through its role in GLUT1 trafficking. It also modulates the subcellular localization and stimulus-specific function of the cation channel TRPV4. PACSIN 3 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to
Probab=32.68 E-value=6e+02 Score=26.56 Aligned_cols=23 Identities=13% Similarity=0.235 Sum_probs=18.7
Q ss_pred ccccccCCCcccHHHHHHhhchh
Q 037857 30 VGEIDTRAPFQSVKAAVSLFGEV 52 (582)
Q Consensus 30 ~~~iDt~apf~SVk~Avs~FG~~ 52 (582)
.|.|++.++|+|++.+..-|-+.
T Consensus 50 ~~~~e~g~eyGTL~~sw~~~~~e 72 (258)
T cd07681 50 RGIVEKGPQYGTLEKAWHAFLTA 72 (258)
T ss_pred HHhhhcccccChHHHHHHHHHHH
Confidence 47788888999999998877654
No 120
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=32.31 E-value=8.3e+02 Score=28.75 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=17.5
Q ss_pred cccCCCcccHHHHHHhhchhhhc
Q 037857 33 IDTRAPFQSVKAAVSLFGEVKLA 55 (582)
Q Consensus 33 iDt~apf~SVk~Avs~FG~~~~~ 55 (582)
-|-++|=++|+-=...||-. +|
T Consensus 295 tDVtp~P~~V~KiAasf~A~-ly 316 (652)
T COG2433 295 TDVTPAPETVKKIAASFNAV-LY 316 (652)
T ss_pred ccCCCChHHHHHHHHHcCCc-cc
Confidence 57777788898888889986 44
No 121
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=31.87 E-value=7.8e+02 Score=27.64 Aligned_cols=66 Identities=18% Similarity=0.196 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 037857 164 QQVDIAREHYAITASKIDAAKQELNRIRQDFDAALEAKHSALQQAAEAQRLAKVSSERVADLRKQL 229 (582)
Q Consensus 164 ~eLe~~r~qya~~~aeL~svk~EL~klr~e~~s~~eak~~A~~~a~ea~~~a~~~~~kveeLt~El 229 (582)
..|..++..|+..-..+....++..+|..++.+.=..-+....+.-++..--..+.+.+.++...|
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l 103 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARL 103 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHH
Confidence 567777777777777788788877777777766544433333333333333333444444443333
No 122
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=31.52 E-value=9.2e+02 Score=28.41 Aligned_cols=50 Identities=16% Similarity=0.347 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 319 MRAVTAELNKATKSLQEAADEECSLRNLVASLKLELEDVQKECAELKEKE 368 (582)
Q Consensus 319 v~s~~~ELeeaK~~Lek~~eE~~~l~~~v~SLr~ELek~K~el~~Lke~E 368 (582)
+.....++......+++...+...|...+.-|+.++++.+.++.+++...
T Consensus 417 i~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~ 466 (652)
T COG2433 417 ITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREV 466 (652)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677888888899999999999999999999999999888888887755
No 123
>PF15556 Zwint: ZW10 interactor
Probab=31.29 E-value=5.8e+02 Score=25.97 Aligned_cols=102 Identities=22% Similarity=0.252 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhccCcchHHH
Q 037857 84 RKEIERTKKLLESSESTRARALGDLERAKRTMLELTTKLKAVKDSKESAIAAAEHVRKQAKQLEEA-KSQKNIGGIAVER 162 (582)
Q Consensus 84 qeel~k~keql~~aE~~K~qal~ELe~aKr~veeL~~kLe~a~~~~~~A~e~sE~~k~r~~ElEq~-~~~~~~~~~e~a~ 162 (582)
++=-.-|.++.+..-.+=.++|--++.|.|.--.|..-|+..+..+.-+++-..+++.+-+ +.|. .-+.-.
T Consensus 69 KeLKAtYqehVEaIk~alt~aL~q~eEaqrK~~qLqeA~eqlqaKKqva~eK~r~AQkqwq-lqQeK~LQ~La------- 140 (252)
T PF15556_consen 69 KELKATYQEHVEAIKSALTQALPQVEEAQRKRTQLQEALEQLQAKKQVAMEKLRAAQKQWQ-LQQEKHLQHLA------- 140 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-------
Confidence 3334578899999999999999999999999888888888777666667666666655421 2221 110000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 163 KQQVDIAREHYAITASKIDAAKQELNRIRQDF 194 (582)
Q Consensus 163 k~eLe~~r~qya~~~aeL~svk~EL~klr~e~ 194 (582)
.=-..+|.+..-...+|....+||..++++.
T Consensus 141 -e~sAEvrerq~~~qqeLe~l~qeL~~lkqQa 171 (252)
T PF15556_consen 141 -EVSAEVRERQTGTQQELERLYQELGTLKQQA 171 (252)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0001255666666666666666666666554
No 124
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=31.14 E-value=1.3e+03 Score=29.89 Aligned_cols=56 Identities=11% Similarity=0.072 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHh
Q 037857 502 LAEAEAQLLVINARKNEADKKLEANLTDVEEIKNATEAALKSAETATAAQSMVEAELRRW 561 (582)
Q Consensus 502 vaaA~aqve~akase~e~l~kLe~~~~eie~~k~ale~Al~raE~A~~aK~avE~ELRrw 561 (582)
....+.+...+...-.+.+..+.....+++.....+..+... ..++....+..-.|
T Consensus 440 ~i~~L~~~~~~~e~a~~~~~~~~~~~~el~~~~~~~~e~~~~----~~~~~~~~~~~~~~ 495 (1353)
T TIGR02680 440 QVALLRRRDDVADRAEATHAAARARRDELDEEAEQAAARAEL----ADEAVHREGARLAW 495 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 333444444445555566677777777776666655555554 34445556666677
No 125
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=30.71 E-value=3.9e+02 Score=27.30 Aligned_cols=46 Identities=26% Similarity=0.392 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 322 VTAELNKATKSLQEAADEECSLRNLVASLKLELEDVQKECAELKEK 367 (582)
Q Consensus 322 ~~~ELeeaK~~Lek~~eE~~~l~~~v~SLr~ELek~K~el~~Lke~ 367 (582)
+..+|+.-...|+++...+..+..-++.+..|-++...+...|++.
T Consensus 163 L~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~ 208 (216)
T KOG1962|consen 163 LETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQ 208 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 4556666667777777777777777788888888777777777664
No 126
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=30.36 E-value=1.2e+03 Score=29.23 Aligned_cols=105 Identities=18% Similarity=0.140 Sum_probs=59.9
Q ss_pred cccccCCCCCCCcccccccCCCcccHHHHHHhhchhhhcc---c-CCC-------cchhhccccchhhh-----hHHHHH
Q 037857 17 QKAKVSSGSPRGEVGEIDTRAPFQSVKAAVSLFGEVKLAN---N-KNK-------PLFRRTRLSSENVL-----DKETQL 80 (582)
Q Consensus 17 ~~~~~~~~~~~~~~~~iDt~apf~SVk~Avs~FG~~~~~k---~-~~~-------~~~~r~~~~~e~v~-----~~e~qL 80 (582)
-|+-...-.|+...+.++++-|-++|-=--+++||..... + |.+ |.+.+...++..+. -.+.++
T Consensus 559 IPvs~~~~~e~~~~~~~~~r~~~~~~~~~~~i~g~~~~~i~~S~ygs~~v~~~~~~lk~~~f~~~~~~l~~~~~~~ee~~ 638 (1072)
T KOG0979|consen 559 IPVSKREVEEAIVEVLQNIRQPNGSVFLKRNIAGGRSKSIKKSAYGSRQVITRNDPLKSRNFFSVSPVLEELDNRIEEEI 638 (1072)
T ss_pred cccCcccccHHHHHHHhccccCCCchhHHHHhhcCchhhhhhhccccceeeecCCcchhhhhhccchHHHHHHHHHHHHH
Confidence 4555555666778889999999999988888999864331 0 111 11222222222221 112233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 81 LLARKEIERTKKLLESSESTRARALGDLERAKRTMLELTTK 121 (582)
Q Consensus 81 ~~aqeel~k~keql~~aE~~K~qal~ELe~aKr~veeL~~k 121 (582)
.....++.-.+..+..-+..+.....+|+........+...
T Consensus 639 ~~~~~~~~~~~~~~r~lee~~~k~~k~le~~~~~~~~~~~e 679 (1072)
T KOG0979|consen 639 QKLKAEIDIRSSTLRELEEKKQKERKELEEEQKKLKLLKRE 679 (1072)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566666666667777777777666655554433
No 127
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=30.20 E-value=3.5e+02 Score=23.07 Aligned_cols=81 Identities=17% Similarity=0.264 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhhHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 037857 171 EHYAITASKIDAAKQELNRIRQDFDAALEAKHSAL-----QQAAEAQRLAKVSSERVADLRKQLSAMKEGIKQIKLAAQE 245 (582)
Q Consensus 171 ~qya~~~aeL~svk~EL~klr~e~~s~~eak~~A~-----~~a~ea~~~a~~~~~kveeLt~El~~lke~l~~~~~a~~e 245 (582)
..++.+...+......|..|...+......-.... ........-.......+..+..+|..+...++..+..-.+
T Consensus 5 ~~l~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~ 84 (123)
T PF02050_consen 5 QELAEAQQELQEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQE 84 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666666666655555433322222 3333333444445555666666666666666655555555
Q ss_pred HHHHHH
Q 037857 246 ATDEQA 251 (582)
Q Consensus 246 A~ee~~ 251 (582)
|..+..
T Consensus 85 a~~~~k 90 (123)
T PF02050_consen 85 ARRERK 90 (123)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554443
No 128
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=30.11 E-value=2.9e+02 Score=22.27 Aligned_cols=30 Identities=17% Similarity=0.248 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 319 MRAVTAELNKATKSLQEAADEECSLRNLVA 348 (582)
Q Consensus 319 v~s~~~ELeeaK~~Lek~~eE~~~l~~~v~ 348 (582)
+..++.|+++.+.+|+++.+-+..+...++
T Consensus 16 i~tvk~en~~i~~~ve~i~envk~ll~lYE 45 (55)
T PF05377_consen 16 INTVKKENEEISESVEKIEENVKDLLSLYE 45 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666666655554
No 129
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=30.07 E-value=2.1e+02 Score=23.08 Aligned_cols=37 Identities=16% Similarity=0.307 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 333 LQEAADEECSLRNLVASLKLELEDVQKECAELKEKEA 369 (582)
Q Consensus 333 Lek~~eE~~~l~~~v~SLr~ELek~K~el~~Lke~E~ 369 (582)
|..+..++..+.+.+.+++.|.+..+..+..+.+.-+
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk 38 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIEENVK 38 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677788888888888888888888888877654
No 130
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=29.43 E-value=4.7e+02 Score=24.40 Aligned_cols=80 Identities=15% Similarity=0.277 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHhhhhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 342 SLRNLVASLKLELEDVQKECAELKEKEAEMEVIKGALMESIAKESAVECEDSLNEHKLELEKLSAETETAMKEEAVIKEE 421 (582)
Q Consensus 342 ~l~~~v~SLr~ELek~K~el~~Lke~E~~a~~~~~~eL~~~kse~a~~~~e~~~~l~~~lqql~~Eae~ak~eae~~~~E 421 (582)
.|..++.++-.-|+++-..+...|.... -++..+-..|++...=....+.+...++..
T Consensus 40 ~m~~A~~~v~kql~~vs~~l~~tKkhLs----------------------qRId~vd~klDe~~ei~~~i~~eV~~v~~d 97 (126)
T PF07889_consen 40 SMSDAVASVSKQLEQVSESLSSTKKHLS----------------------QRIDRVDDKLDEQKEISKQIKDEVTEVRED 97 (126)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 4566666777777777666666655332 011122233333333333444455556666
Q ss_pred HHHHHHHHHHHHhhHHHHHHHH
Q 037857 422 AEHLKQAAEAARMLAKEAEKNL 443 (582)
Q Consensus 422 ~~k~k~E~e~~ka~~~t~E~rL 443 (582)
+.....++......+.+.+.+|
T Consensus 98 v~~i~~dv~~v~~~V~~Le~ki 119 (126)
T PF07889_consen 98 VSQIGDDVDSVQQMVEGLEGKI 119 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6666677777777777777666
No 131
>PRK12472 hypothetical protein; Provisional
Probab=28.87 E-value=9.3e+02 Score=27.61 Aligned_cols=88 Identities=23% Similarity=0.269 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchH
Q 037857 81 LLARKEIERTKKLLESSESTRARALGDLERAKRTMLELTTKLKAVKDSKESAIAAAEHVRKQAKQLEEAKSQKNIGGIAV 160 (582)
Q Consensus 81 ~~aqeel~k~keql~~aE~~K~qal~ELe~aKr~veeL~~kLe~a~~~~~~A~e~sE~~k~r~~ElEq~~~~~~~~~~e~ 160 (582)
.....++..++..|..+|..|+++-.||..|-|.+......=..+. +.+.++.....+ .
T Consensus 214 ~~~~~~~~~~~~~l~~~e~~~~~a~~~l~~adk~l~~a~~d~~~~~----------------a~~~~~~~~~~~-----~ 272 (508)
T PRK12472 214 AAAAREAAPLKASLRKLERAKARADAELKRADKALAAAKTDEAKAR----------------AEERQQKAAQQA-----A 272 (508)
T ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhh----------------HHHHHHHHHHHH-----H
Confidence 3456778888888899999999999999888877665543332222 222222221111 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 161 ERKQQVDIAREHYAITASKIDAAKQELNR 189 (582)
Q Consensus 161 a~k~eLe~~r~qya~~~aeL~svk~EL~k 189 (582)
....+|+.++..-+.....+.++++....
T Consensus 273 ~a~~~~~~a~~~~~~~~~~~~~~~~a~~~ 301 (508)
T PRK12472 273 EAATQLDTAKADAEAKRAAAAATKEAAKA 301 (508)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34566777776666666666666655443
No 132
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=28.23 E-value=6.6e+02 Score=25.66 Aligned_cols=50 Identities=18% Similarity=0.238 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 320 RAVTAELNKATKSLQEAADEECSLRNLVASLKLELEDVQKECAELKEKEA 369 (582)
Q Consensus 320 ~s~~~ELeeaK~~Lek~~eE~~~l~~~v~SLr~ELek~K~el~~Lke~E~ 369 (582)
..+.--+.++...|.+++..+..+......|..++++.......+..+-.
T Consensus 27 ~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~ 76 (225)
T COG1842 27 KMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAE 76 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666778888888888888888888888888888888888887766554
No 133
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=28.21 E-value=8.1e+02 Score=29.68 Aligned_cols=47 Identities=23% Similarity=0.191 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH------HHHHHHHHHH
Q 037857 418 IKEEAEHLKQAAEAARMLAKEAEKNLQLALSEVEQAK------ASERKALGEL 464 (582)
Q Consensus 418 ~~~E~~k~k~E~e~~ka~~~t~E~rL~aa~kE~EAak------asEa~Alaei 464 (582)
...|..++|-|++++-+.+....++|.++-+|.-... -+|-.=|.+|
T Consensus 492 ~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eL 544 (861)
T PF15254_consen 492 FDIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLREL 544 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHH
Confidence 4456677888888888888888888888888876654 4454444444
No 134
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=27.64 E-value=3.3e+02 Score=29.22 Aligned_cols=63 Identities=14% Similarity=0.307 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 037857 164 QQVDIAREHYAITASKIDAAKQELNRIRQDFDAALEAKHSALQQAAEAQRLAKVSSERVADLR 226 (582)
Q Consensus 164 ~eLe~~r~qya~~~aeL~svk~EL~klr~e~~s~~eak~~A~~~a~ea~~~a~~~~~kveeLt 226 (582)
.+|..++.++...-..|..+...|..++.+|..+...+..-..++..+.....-..+-+..|+
T Consensus 228 ~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~ 290 (344)
T PF12777_consen 228 AELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLS 290 (344)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhc
Confidence 445666667777777777777777778888877777766665555544443333333333333
No 135
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=27.09 E-value=1.2e+03 Score=28.12 Aligned_cols=101 Identities=14% Similarity=0.200 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhc-cCcchHHHHHHHHHHH
Q 037857 93 LLESSESTRARALGDLERAKRTMLELTTKLKAVKDSKESAIAAAEHVRKQAKQLEE-AKSQKN-IGGIAVERKQQVDIAR 170 (582)
Q Consensus 93 ql~~aE~~K~qal~ELe~aKr~veeL~~kLe~a~~~~~~A~e~sE~~k~r~~ElEq-~~~~~~-~~~~e~a~k~eLe~~r 170 (582)
+.......+.+=+.+|...+...+.|+..-+.....=..+.+--+.-..|++.+=+ -..... .-.+|.+|+.||+.++
T Consensus 566 rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~ 645 (717)
T PF10168_consen 566 RVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMK 645 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHH
Confidence 33334444455555555555555555433333332222333333334444444411 111111 1124788999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 037857 171 EHYAITASKIDAAKQELNRIRQD 193 (582)
Q Consensus 171 ~qya~~~aeL~svk~EL~klr~e 193 (582)
.+....-.-|+.++.-+.+.+..
T Consensus 646 ~~l~~l~~si~~lk~k~~~Q~~~ 668 (717)
T PF10168_consen 646 DQLQDLKASIEQLKKKLDYQQRQ 668 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 88766666666666666664443
No 136
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=27.07 E-value=7.9e+02 Score=26.22 Aligned_cols=35 Identities=11% Similarity=0.181 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 163 KQQVDIAREHYAITASKIDAAKQELNRIRQDFDAA 197 (582)
Q Consensus 163 k~eLe~~r~qya~~~aeL~svk~EL~klr~e~~s~ 197 (582)
+.++...+..|...-.++..+..+|..++.++..+
T Consensus 195 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~ 229 (423)
T TIGR01843 195 RLELLELERERAEAQGELGRLEAELEVLKRQIDEL 229 (423)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666666666655443
No 137
>PF15249 GLTSCR1: Glioma tumor suppressor candidate region
Probab=26.62 E-value=39 Score=30.41 Aligned_cols=15 Identities=40% Similarity=0.687 Sum_probs=14.0
Q ss_pred ccCCCcccHHHHHHh
Q 037857 34 DTRAPFQSVKAAVSL 48 (582)
Q Consensus 34 Dt~apf~SVk~Avs~ 48 (582)
|+..||.|+.+||.+
T Consensus 16 D~~tPF~s~~DA~~R 30 (109)
T PF15249_consen 16 DYKTPFRSLEDAVER 30 (109)
T ss_pred CcCCCCCCHHHHHHH
Confidence 889999999999986
No 138
>PF15294 Leu_zip: Leucine zipper
Probab=26.19 E-value=8.1e+02 Score=26.00 Aligned_cols=26 Identities=15% Similarity=0.203 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Q 037857 222 VADLRKQLSAMKEGIKQIKLAAQEAT 247 (582)
Q Consensus 222 veeLt~El~~lke~l~~~~~a~~eA~ 247 (582)
++-|..||.+|+++.+..+.--.--+
T Consensus 127 ~~ll~kEi~rLq~EN~kLk~rl~~le 152 (278)
T PF15294_consen 127 SELLNKEIDRLQEENEKLKERLKSLE 152 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45599999999999998854433333
No 139
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=26.03 E-value=6.2e+02 Score=27.18 Aligned_cols=68 Identities=12% Similarity=0.153 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHHHH
Q 037857 110 RAKRTMLELTTKLKAVKDSKESAIAAAEHVRKQAKQLEEAKSQKNIGGIAVERKQQVDIAREHYAITASK 179 (582)
Q Consensus 110 ~aKr~veeL~~kLe~a~~~~~~A~e~sE~~k~r~~ElEq~~~~~~~~~~e~a~k~eLe~~r~qya~~~ae 179 (582)
.....+..|...++.+...+.......+....|+..-..-+..-. +-. .-|...+.....++...+.+
T Consensus 246 ~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~-~E~-~RW~~~~~~l~~~~~~l~GD 313 (344)
T PF12777_consen 246 ELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLS-GEK-ERWSEQIEELEEQLKNLVGD 313 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH-HHH-HCCHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhc-chh-hhHHHHHHHHHHHhcccHHH
Confidence 333444444444444444444444444444443333222222111 111 34777777666666655544
No 140
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=25.75 E-value=1.1e+02 Score=29.92 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=14.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHH
Q 037857 287 TENLEIQLAQTTEEIKVLQKQM 308 (582)
Q Consensus 287 ~~~LE~kL~et~~~ie~Lq~el 308 (582)
..|||.|+..+..-...|+.||
T Consensus 2 LeD~EsklN~AIERnalLE~EL 23 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESEL 23 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHH
Confidence 4678888877765555555543
No 141
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=25.22 E-value=2.4e+02 Score=25.21 Aligned_cols=45 Identities=20% Similarity=0.260 Sum_probs=37.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 71 ENVLDKETQLLLARKEIERTKKLLESSESTRARALGDLERAKRTM 115 (582)
Q Consensus 71 e~v~~~e~qL~~aqeel~k~keql~~aE~~K~qal~ELe~aKr~v 115 (582)
|++.++.-||+.+.+|..=+.+.+...+...-++..||.+.|-..
T Consensus 1 E~~aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~ 45 (96)
T PF11365_consen 1 EDSAELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKY 45 (96)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356677789999999999999999999998888888888877643
No 142
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=25.21 E-value=24 Score=41.72 Aligned_cols=61 Identities=11% Similarity=0.326 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH---HHHHHHHhhHHHHH
Q 037857 180 IDAAKQELNRIRQDFDAALEAKHSALQQAAEAQRLAKVSSERVADLR---KQLSAMKEGIKQIK 240 (582)
Q Consensus 180 L~svk~EL~klr~e~~s~~eak~~A~~~a~ea~~~a~~~~~kveeLt---~El~~lke~l~~~~ 240 (582)
+...+..|..++.++...-+.++-...+++.........-.++++|. .+...+++.++-.+
T Consensus 241 ~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR 304 (713)
T PF05622_consen 241 LADLRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQAEAREARALRDELDELR 304 (713)
T ss_dssp ----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 34445556666665554444444333333333333333333444444 34444455555543
No 143
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=24.91 E-value=8.4e+02 Score=25.78 Aligned_cols=31 Identities=23% Similarity=0.144 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 163 KQQVDIAREHYAITASKIDAAKQELNRIRQD 193 (582)
Q Consensus 163 k~eLe~~r~qya~~~aeL~svk~EL~klr~e 193 (582)
+.+++.++..|...-..|..++.++..+...
T Consensus 151 ~~~~~~a~~~~~~a~~~l~~a~~~~~~~~~~ 181 (346)
T PRK10476 151 AQQVDQARTAQRDAEVSLNQALLQAQAAAAA 181 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778888888888777777777777666543
No 144
>PHA03011 hypothetical protein; Provisional
Probab=24.69 E-value=5.3e+02 Score=23.35 Aligned_cols=53 Identities=13% Similarity=0.270 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhH
Q 037857 184 KQELNRIRQDFDAALEAKHSALQQAAEAQRLAKVSSERVADLRKQLSAMKEGI 236 (582)
Q Consensus 184 k~EL~klr~e~~s~~eak~~A~~~a~ea~~~a~~~~~kveeLt~El~~lke~l 236 (582)
++-|..|+.+|..++++=.--.+...+-....+.+...+--|+.||+++|+-+
T Consensus 63 ~e~ldeL~~qYN~L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~ni 115 (120)
T PHA03011 63 IEILDELIAQYNELLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKENI 115 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHH
Confidence 33344444444444454444455555556677888889999999999999865
No 145
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=24.49 E-value=6e+02 Score=23.95 Aligned_cols=24 Identities=17% Similarity=0.398 Sum_probs=10.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Q 037857 224 DLRKQLSAMKEGIKQIKLAAQEAT 247 (582)
Q Consensus 224 eLt~El~~lke~l~~~~~a~~eA~ 247 (582)
.|+..|.-|-+.|+.+...-.++.
T Consensus 77 ~l~rriq~LEeele~ae~~L~e~~ 100 (143)
T PF12718_consen 77 QLNRRIQLLEEELEEAEKKLKETT 100 (143)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444433333333
No 146
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=24.04 E-value=3.5e+02 Score=23.63 Aligned_cols=44 Identities=20% Similarity=0.284 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 037857 400 ELEKLSAETETAMKEEAVIKEEAEHLKQAAEAARMLAKEAEKNL 443 (582)
Q Consensus 400 ~lqql~~Eae~ak~eae~~~~E~~k~k~E~e~~ka~~~t~E~rL 443 (582)
.+.+|+++....+..+..+...+..++..+..++.....+-.||
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~Ri 68 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRL 68 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444444444444444444444444444444444444443
No 147
>PRK01156 chromosome segregation protein; Provisional
Probab=23.88 E-value=1.3e+03 Score=27.79 Aligned_cols=347 Identities=11% Similarity=0.147 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 037857 75 DKETQLLLARKEIERTKKLLESSESTRARALGDLERAKRTMLELTTKLKAVKDSKESAIAAAEHVRKQAKQLEEAKSQKN 154 (582)
Q Consensus 75 ~~e~qL~~aqeel~k~keql~~aE~~K~qal~ELe~aKr~veeL~~kLe~a~~~~~~A~e~sE~~k~r~~ElEq~~~~~~ 154 (582)
.+...|......+..++.++...+.-... +.++..-....+++..+++..............-...-..+++.-...
T Consensus 302 ~~~~~l~~l~~~l~~l~~~l~~~e~~~~~-~e~~~~~~~e~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~l~~~~~~-- 378 (895)
T PRK01156 302 KYKNDIENKKQILSNIDAEINKYHAIIKK-LSVLQKDYNDYIKKKSRYDDLNNQILELEGYEMDYNSYLKSIESLKKK-- 378 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q ss_pred cCcchHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Q 037857 155 IGGIAVERKQQVDIAREHYAI-----------TASKIDAAKQELNRIRQDFDAALEAKHSALQQAAEAQRLAK------- 216 (582)
Q Consensus 155 ~~~~e~a~k~eLe~~r~qya~-----------~~aeL~svk~EL~klr~e~~s~~eak~~A~~~a~ea~~~a~------- 216 (582)
-.....++......+.. ....+.-...++..|..+...+-.....-.+...+-..+..
T Consensus 379 ----~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~i~~l~~~i~~l~~~~~el~~~~~~l~~~~~ 454 (895)
T PRK01156 379 ----IEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQSV 454 (895)
T ss_pred ----HHHhhhhHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q ss_pred ------------------HhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHH
Q 037857 217 ------------------VSSERVADLRKQLSAMKEGIKQIKLAAQEATDEQARIVSEKDTLMQSYKAAQEAAENKLNSL 278 (582)
Q Consensus 217 ------------------~~~~kveeLt~El~~lke~l~~~~~a~~eA~ee~~~i~~e~~~~~~~~~~~l~e~e~~l~~L 278 (582)
.....++.+..++..++..+....--...-......+..............+.....+|..+
T Consensus 455 Cp~c~~~~~~e~~~e~i~~~~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~l~~~l~~~ 534 (895)
T PRK01156 455 CPVCGTTLGEEKSNHIINHYNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYLESEEINKSINEYNKIESARADLEDI 534 (895)
T ss_pred CCCCCCcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhccH---------HhHHHHHH------------------------------HHHHhHHHHHHHHHHHHHHhH------
Q 037857 279 KKEYDP---------QLTENLEI------------------------------QLAQTTEEIKVLQKQMKQAHA------ 313 (582)
Q Consensus 279 k~el~~---------el~~~LE~------------------------------kL~et~~~ie~Lq~el~~~~~------ 313 (582)
+.++.. ++...+.. ++.+....+..+...++....
T Consensus 535 ~~~l~~le~~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~l~~l~~~l~~le~~~~~~~ 614 (895)
T PRK01156 535 KIKINELKDKHDKYEEIKNRYKSLKLEDLDSKRTSWLNALAVISLIDIETNRSRSNEIKKQLNDLESRLQEIEIGFPDDK 614 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhh
Q ss_pred ----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHhhhhhHh
Q 037857 314 ----AEMDSMRAVTAELNKATKSLQEAADEECSLRNLVASLKLELEDVQKECAELKEKEAEMEVIKGALMESIAKESAVE 389 (582)
Q Consensus 314 ----~e~~sv~s~~~ELeeaK~~Lek~~eE~~~l~~~v~SLr~ELek~K~el~~Lke~E~~a~~~~~~eL~~~kse~a~~ 389 (582)
..+..+.....+|+..+..+...+.+...+...+..|..++.........+...+
T Consensus 615 ~~~~~~~~~le~~~~~le~~~~~l~~~~~~i~~~~~~i~~l~~~i~~l~~~~~~~~~~~--------------------- 673 (895)
T PRK01156 615 SYIDKSIREIENEANNLNNKYNEIQENKILIEKLRGKIDNYKKQIAEIDSIIPDLKEIT--------------------- 673 (895)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhH---------------------
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 390 CEDSLNEHKLELEKLSAETETAMKEEAVIKEEAEHLKQAAEAARMLAKEAEKNLQLALSEVEQAKASER 458 (582)
Q Consensus 390 ~~e~~~~l~~~lqql~~Eae~ak~eae~~~~E~~k~k~E~e~~ka~~~t~E~rL~aa~kE~EAakasEa 458 (582)
..+..+..+..........+...+..+...++..+..+...+.+|....+.....+..+.
T Consensus 674 ---------~~~~~~~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~l~eel~~~~~~~~~l~~~~~ 733 (895)
T PRK01156 674 ---------SRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINETLESMKKIKK 733 (895)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
No 148
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=23.74 E-value=9.3e+02 Score=25.89 Aligned_cols=103 Identities=28% Similarity=0.304 Sum_probs=64.1
Q ss_pred HHhhhHhHHHHHHHHHHHHHHHHHHhhhccHHhHHHHHHHHHHhHHHHHHHHHHHHHHhHhhHHHHHHHHHHH----HHH
Q 037857 254 VSEKDTLMQSYKAAQEAAENKLNSLKKEYDPQLTENLEIQLAQTTEEIKVLQKQMKQAHAAEMDSMRAVTAEL----NKA 329 (582)
Q Consensus 254 ~~e~~~~~~~~~~~l~e~e~~l~~Lk~el~~el~~~LE~kL~et~~~ie~Lq~el~~~~~~e~~sv~s~~~EL----eea 329 (582)
+.+..-++..|+-+++ .-+=+||.-+- .=++||---+. ||+..|..-...++.+..-| .+-
T Consensus 193 vl~s~tDa~eW~lEvE---RVlPQLKVt~k-~DakDWR~H~~-----------QM~s~~~nIe~~~~~~~~~Ldklh~ei 257 (384)
T KOG0972|consen 193 VLQSNTDAIEWKLEVE---RVLPQLKVTLK-QDAKDWRLHLE-----------QMNSMHKNIEQKVGNVGPYLDKLHKEI 257 (384)
T ss_pred HHhhcchHHHHHHHHH---Hhhhhheehhc-cccHHHHHHHH-----------HHHHHHHHHHHhhcchhHHHHHHHHHH
Confidence 3445556667776654 34455554331 11566654443 33333333333333333333 456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 330 TKSLQEAADEECSLRNLVASLKLELEDVQKECAELKEKEAEM 371 (582)
Q Consensus 330 K~~Lek~~eE~~~l~~~v~SLr~ELek~K~el~~Lke~E~~a 371 (582)
...|+++......|.+-..+|-.+.......++.++++-+-+
T Consensus 258 t~~LEkI~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~ 299 (384)
T KOG0972|consen 258 TKALEKIASREKSLNNQLASLMQKFRRATDTLSELREKYKQA 299 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 678889999999999999999999999999999998876544
No 149
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=23.62 E-value=4.5e+02 Score=26.42 Aligned_cols=88 Identities=18% Similarity=0.296 Sum_probs=0.0
Q ss_pred HHHHHhhhccHHhHHHHHHHHHHhHHHHHH-----------HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 274 KLNSLKKEYDPQLTENLEIQLAQTTEEIKV-----------LQKQMKQAHAAEMDSMRAVTAELNKATKSLQEAADEECS 342 (582)
Q Consensus 274 ~l~~Lk~el~~el~~~LE~kL~et~~~ie~-----------Lq~el~~~~~~e~~sv~s~~~ELeeaK~~Lek~~eE~~~ 342 (582)
+.-.|+.+ ..+|+.+|..+...... ++.|++..-.--...+.....---..-.+|..+++++..
T Consensus 97 EevrLkrE-----La~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~YK~~ql~~~~~~~~~~~~~l~~v~~Dl~~ 171 (195)
T PF12761_consen 97 EEVRLKRE-----LAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLDYKERQLRELEEGRSKSGKNLKSVREDLDT 171 (195)
T ss_pred HHHHHHHH-----HHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 343 LRNLVASLKLELEDVQKECAELKE 366 (582)
Q Consensus 343 l~~~v~SLr~ELek~K~el~~Lke 366 (582)
+..-|..|..=|..=+.+|..|++
T Consensus 172 ie~QV~~Le~~L~~k~~eL~~L~q 195 (195)
T PF12761_consen 172 IEEQVDGLESHLSSKKQELQQLRQ 195 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
No 150
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=23.52 E-value=4.5e+02 Score=22.19 Aligned_cols=42 Identities=14% Similarity=0.215 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 166 VDIAREHYAITASKIDAAKQELNRIRQDFDAALEAKHSALQQ 207 (582)
Q Consensus 166 Le~~r~qya~~~aeL~svk~EL~klr~e~~s~~eak~~A~~~ 207 (582)
|...+.+|-.+|-|....++.|..+++|+..++=..|+|..=
T Consensus 10 L~~lQnEWDa~mLE~f~LRk~l~~~rqELs~aLYq~DAA~RV 51 (70)
T PF08606_consen 10 LSTLQNEWDALMLENFTLRKQLDQTRQELSHALYQHDAACRV 51 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 556778899999999999999999999999888888777643
No 151
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=22.77 E-value=6.9e+02 Score=27.14 Aligned_cols=32 Identities=25% Similarity=0.275 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 163 KQQVDIAREHYAITASKIDAAKQELNRIRQDF 194 (582)
Q Consensus 163 k~eLe~~r~qya~~~aeL~svk~EL~klr~e~ 194 (582)
+.+++.++..|..+-+.|..++..|...+..+
T Consensus 140 ~~~~d~a~~~~~~a~a~~~~a~a~l~~a~~~l 171 (397)
T PRK15030 140 KQEYDQALADAQQANAAVTAAKAAVETARINL 171 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 57778888888777777777777777665544
No 152
>PF12001 DUF3496: Domain of unknown function (DUF3496); InterPro: IPR021885 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 110 amino acids in length.
Probab=22.70 E-value=4.4e+02 Score=24.18 Aligned_cols=51 Identities=25% Similarity=0.344 Sum_probs=36.1
Q ss_pred hhhHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 73 VLDKETQLLLAR--------KEIERTKKLLESSESTRARALGDLERAKRTMLELTTKLK 123 (582)
Q Consensus 73 v~~~e~qL~~aq--------eel~k~keql~~aE~~K~qal~ELe~aKr~veeL~~kLe 123 (582)
..+++.+|..++ -+|.+||+.--..=..+.-.-..|.++...+.+.+.+|-
T Consensus 9 IkdLeselsk~Ktsq~d~~~~eLEkYkqly~eElk~r~SLs~kL~ktnerLaevstkLl 67 (111)
T PF12001_consen 9 IKDLESELSKMKTSQEDSNKTELEKYKQLYLEELKLRKSLSNKLNKTNERLAEVSTKLL 67 (111)
T ss_pred HHHHHHHHHHhHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 344455554443 678888887776666666777788888888888888774
No 153
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=22.52 E-value=7.8e+02 Score=24.52 Aligned_cols=153 Identities=18% Similarity=0.265 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhHHHHHHHHHHHHHHhhHHH
Q 037857 162 RKQQVDIAREHYAITASKIDAAKQELNRIRQDFDAALEAKHSALQQAAEAQR---LAKVSSERVADLRKQLSAMKEGIKQ 238 (582)
Q Consensus 162 ~k~eLe~~r~qya~~~aeL~svk~EL~klr~e~~s~~eak~~A~~~a~ea~~---~a~~~~~kveeLt~El~~lke~l~~ 238 (582)
+|.++..++.+....-..+..+..|-.+|..-+..+......-.++-..-.. +......++..+..+|..++-..+.
T Consensus 32 LKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~ev 111 (201)
T PF13851_consen 32 LKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEV 111 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHhhhccHHhHHHHHHHHHHhHHHHHHHHHHHHHHhHh---h
Q 037857 239 IKLAAQEATDEQARIVSEKDTLMQSYKAAQEAAENKLNSLKKEYDPQLTENLEIQLAQTTEEIKVLQKQMKQAHAA---E 315 (582)
Q Consensus 239 ~~~a~~eA~ee~~~i~~e~~~~~~~~~~~l~e~e~~l~~Lk~el~~el~~~LE~kL~et~~~ie~Lq~el~~~~~~---e 315 (582)
. ...+..+..+++.....|...+-+.+.+.. ++.-+ ||.||..-+..++.-..||..+... +
T Consensus 112 L-------~qr~~kle~ErdeL~~kf~~~i~evqQk~~-~kn~l-------LEkKl~~l~~~lE~keaqL~evl~~~nld 176 (201)
T PF13851_consen 112 L-------EQRFEKLEQERDELYRKFESAIQEVQQKTG-LKNLL-------LEKKLQALSEQLEKKEAQLNEVLAAANLD 176 (201)
T ss_pred H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q ss_pred HHHHHHHHHHHHHH
Q 037857 316 MDSMRAVTAELNKA 329 (582)
Q Consensus 316 ~~sv~s~~~ELeea 329 (582)
..++..+...|+++
T Consensus 177 p~~~~~v~~~l~~~ 190 (201)
T PF13851_consen 177 PAALSQVSKKLEDV 190 (201)
T ss_pred HHHHHHHHHHHHHH
No 154
>PRK15396 murein lipoprotein; Provisional
Probab=22.17 E-value=4.4e+02 Score=22.62 Aligned_cols=33 Identities=15% Similarity=0.310 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037857 402 EKLSAETETAMKEEAVIKEEAEHLKQAAEAARM 434 (582)
Q Consensus 402 qql~~Eae~ak~eae~~~~E~~k~k~E~e~~ka 434 (582)
.+|+++..........+...+.-++..+..++.
T Consensus 28 d~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~ 60 (78)
T PRK15396 28 DQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKD 60 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333
No 155
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=22.11 E-value=9.6e+02 Score=25.46 Aligned_cols=47 Identities=26% Similarity=0.402 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 319 MRAVTAELNKATKSLQEAADEECSLRNLVASLKLELEDVQKECAELK 365 (582)
Q Consensus 319 v~s~~~ELeeaK~~Lek~~eE~~~l~~~v~SLr~ELek~K~el~~Lk 365 (582)
|..+..++...+..|..+..+...|-..+..-+.||++.+..+..|+
T Consensus 114 Iq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~Lq 160 (338)
T KOG3647|consen 114 IQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQ 160 (338)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666777777777777777776666666666666666666553
No 156
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=22.04 E-value=9.9e+02 Score=25.56 Aligned_cols=61 Identities=20% Similarity=0.198 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 037857 397 HKLELEKLSAETETAMKEEAVIKEEAEHLKQAAEAARMLAKEAEKNLQLALSEVEQAKASE 457 (582)
Q Consensus 397 l~~~lqql~~Eae~ak~eae~~~~E~~k~k~E~e~~ka~~~t~E~rL~aa~kE~EAakasE 457 (582)
....|-++..+++..++.+..+..+.-+....+...+-.+......|.-..+.+-+-++.+
T Consensus 191 ~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~l~~~~ 251 (294)
T COG1340 191 YHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKALRAKE 251 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555555555555555555555555555555554444433
No 157
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=21.90 E-value=7.4e+02 Score=24.03 Aligned_cols=78 Identities=15% Similarity=0.246 Sum_probs=54.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhHhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 291 EIQLAQTTEEIKVLQKQMKQAHAAEM---DSMRAVTAELNKATKSLQEAADEECSLRNLVASLKLELEDVQKECAELKEK 367 (582)
Q Consensus 291 E~kL~et~~~ie~Lq~el~~~~~~e~---~sv~s~~~ELeeaK~~Lek~~eE~~~l~~~v~SLr~ELek~K~el~~Lke~ 367 (582)
|.....+......+|.+|-....-+. ..-..+..-|...+.+|+++-.=++++...+.-|...|.++-..+..++++
T Consensus 76 E~dik~AYe~A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tierAE~l~sqi~vvl~yL~~dl~~v~~~~e~~~~~ 155 (159)
T PF05384_consen 76 EEDIKEAYEEAHELQVRLAMLREREKQLRERRDELERRLRNLEETIERAENLVSQIGVVLNYLSGDLQQVSEQIEDAQQK 155 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 44444444444444444443333222 123456777888889999999999999999999999999999988888776
Q ss_pred H
Q 037857 368 E 368 (582)
Q Consensus 368 E 368 (582)
.
T Consensus 156 q 156 (159)
T PF05384_consen 156 Q 156 (159)
T ss_pred h
Confidence 4
No 158
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=21.79 E-value=8.4e+02 Score=24.66 Aligned_cols=192 Identities=19% Similarity=0.240 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 72 NVLDKETQLLLARKEIERTKKLLESSESTRARALGDLERAKRTMLELTTKLK-AVKDSKESAIAAAEHVRKQAKQLEEAK 150 (582)
Q Consensus 72 ~v~~~e~qL~~aqeel~k~keql~~aE~~K~qal~ELe~aKr~veeL~~kLe-~a~~~~~~A~e~sE~~k~r~~ElEq~~ 150 (582)
+...++.+|+.+|+-+.-+..+|..++ |+-.|-++..+.++--..+++ .......+-.++-.++.---...+.-+
T Consensus 12 ri~~leeele~aqErl~~a~~KL~Eae----q~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~eEVa 87 (205)
T KOG1003|consen 12 RIQLLEEELDRAQERLATALQKLEEAE----QAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYEEVA 87 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh----hcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 037857 151 SQKNIGGIAVERKQQVDIAREHYAITASKIDAAKQELNRIRQDFDAALEAKHSALQQAAEAQRLAKVSSERVADLRKQLS 230 (582)
Q Consensus 151 ~~~~~~~~e~a~k~eLe~~r~qya~~~aeL~svk~EL~klr~e~~s~~eak~~A~~~a~ea~~~a~~~~~kveeLt~El~ 230 (582)
.. -+-.-.+|+.+-.+-...-+...-.-+++.-+...+.++--.-..+..+-+ .....+..|+-
T Consensus 88 rk------L~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d-------~~e~~ik~ltd--- 151 (205)
T KOG1003|consen 88 RK------LVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEE-------KYEEELKELTD--- 151 (205)
T ss_pred HH------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHH-------HHHHHHHHHHH---
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHhhhccHHhHHHHHH
Q 037857 231 AMKEGIKQIKLAAQEATDEQARIVSEKDTLMQSYKAAQEAAENKLNSLKKEYDPQLTENLEI 292 (582)
Q Consensus 231 ~lke~l~~~~~a~~eA~ee~~~i~~e~~~~~~~~~~~l~e~e~~l~~Lk~el~~el~~~LE~ 292 (582)
.|++.=..+..+. +-+..-......|+..+.....+-..+..+|| ..+.+|+.
T Consensus 152 KLkEaE~rAE~aE--------RsVakLeke~DdlE~kl~~~k~ky~~~~~eLD-~~~~~L~~ 204 (205)
T KOG1003|consen 152 KLKEAETRAEFAE--------RRVAKLEKERDDLEEKLEEAKEKYEEAKKELD-ETLQELEN 204 (205)
T ss_pred HHhhhhhhHHHHH--------HHHHHHcccHHHHHHhhHHHHHHHHHHHHHHH-HHHHHhhc
No 159
>PF09036 Bcr-Abl_Oligo: Bcr-Abl oncoprotein oligomerisation domain; InterPro: IPR015123 This entry represents the oligomerisation domain of the breakpoint cluster region oncoprotein Bcr, and the Bcr/Abl (Abelson-leukemia-virus) fusion protein created by a reciprocal (9;22) fusion []. Brc displays serine/threonine protein kinase activity (2.7.11.1 from EC), acting as a GTPase-activating protein for RAC1 and CDC42. Brc promotes the exchange of RAC or CDC42-bound GDP by GTP, thereby activating them []. The Bcr/Abl fusion protein loses some of the regulatory function of Bcr with regards to small Rho-like GTPases with negative consequences on cell motility, in particular on the capacity to adhere to endothelial cells []. The Bcr, Bcr/Abl oncoprotein oligomerisation domain consists of a short N-terminal helix (alpha-1), a flexible loop and a long C-terminal helix (alpha-2). Together these form an N-shaped structure, with the loop allowing the two helices to assume a parallel orientation. The monomeric domains associate into a dimer through the formation of an antiparallel coiled coil between the alpha-2 helices and domain swapping of two alpha-1 helices, where one alpha-1 helix swings back and packs against the alpha-2 helix from the second monomer. Two dimers then associate into a tetramer. The oligomerisation domain is essential for the oncogenicity of the Bcr-Abl protein []. ; GO: 0004674 protein serine/threonine kinase activity, 0005096 GTPase activator activity, 0006468 protein phosphorylation, 0007165 signal transduction; PDB: 1K1F_C.
Probab=21.55 E-value=2.8e+02 Score=23.70 Aligned_cols=48 Identities=21% Similarity=0.228 Sum_probs=37.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 314 AEMDSMRAVTAELNKATKSLQEAADEECSLRNLVASLKLELEDVQKEC 361 (582)
Q Consensus 314 ~e~~sv~s~~~ELeeaK~~Lek~~eE~~~l~~~v~SLr~ELek~K~el 361 (582)
+.+.+|..+..||+.+|.+|-.+..|++.=+--|--|.+=|.+++...
T Consensus 23 m~l~svgd~e~eLerCK~sirrLeqevnkERFrmiYLQTlLAkErksy 70 (79)
T PF09036_consen 23 MELRSVGDIEQELERCKASIRRLEQEVNKERFRMIYLQTLLAKERKSY 70 (79)
T ss_dssp ---SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 345688999999999999999999999998888888888887776543
No 160
>COG1394 NtpD Archaeal/vacuolar-type H+-ATPase subunit D [Energy production and conversion]
Probab=21.34 E-value=2.8e+02 Score=28.20 Aligned_cols=80 Identities=28% Similarity=0.339 Sum_probs=48.3
Q ss_pred CCCCCcccccccCCCcccHHHHHHhhchhhhcccCCCcchhhccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 24 GSPRGEVGEIDTRAPFQSVKAAVSLFGEVKLANNKNKPLFRRTRLSSENVLDKETQLLLARKEIERTKKLLESSESTRAR 103 (582)
Q Consensus 24 ~~~~~~~~~iDt~apf~SVk~Avs~FG~~~~~k~~~~~~~~r~~~~~e~v~~~e~qL~~aqeel~k~keql~~aE~~K~q 103 (582)
.+|..+.|.++|.+- +-.|+..|++. +.+ .-...++++.+..+-.+|.+++.+..+.|. .
T Consensus 111 ~~~~~~~~~~~t~~~---ld~a~~~~~el-le~-------------li~lae~e~~~~~L~~Ei~~T~RRVNalE~---~ 170 (211)
T COG1394 111 TPPPYDLGILSTSAW---LDEAIEKFEEL-LEK-------------LIELAELETTLRLLLEEIRKTKRRVNALEY---V 170 (211)
T ss_pred CCCcccccccCCcHH---HHHHHHHHHHH-HHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---h
Confidence 344445554555443 77788888886 440 113445677777888888888888887776 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 037857 104 ALGDLERAKRTMLELTTKLKAVK 126 (582)
Q Consensus 104 al~ELe~aKr~veeL~~kLe~a~ 126 (582)
++-.|+. ++......|++..
T Consensus 171 iIP~l~~---tikyI~~~LeE~e 190 (211)
T COG1394 171 IIPRLEN---TIKYIESKLEERE 190 (211)
T ss_pred hcccHHH---HHHHHHHHHHHHh
Confidence 4554443 3444455565443
No 161
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=21.24 E-value=1.7e+03 Score=27.95 Aligned_cols=112 Identities=22% Similarity=0.324 Sum_probs=66.3
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHhhhccH--HhHHHHHHHHHHhHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHH
Q 037857 256 EKDTLMQSYKAAQEAAENKLNSLKKEYDP--QLTENLEIQLAQTTEEIKVLQKQMKQAHAAEMDSMRAVTAELNKATKSL 333 (582)
Q Consensus 256 e~~~~~~~~~~~l~e~e~~l~~Lk~el~~--el~~~LE~kL~et~~~ie~Lq~el~~~~~~e~~sv~s~~~ELeeaK~~L 333 (582)
..+.....|.....-+...+..|..++-| -.-..||+...+|-+.+..++..|..+..- +...-..|++....+
T Consensus 245 ~~~~ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k----~~~~~ek~~~~~~~v 320 (1072)
T KOG0979|consen 245 KHDREYNAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAK----VQEKFEKLKEIEDEV 320 (1072)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 34456667777777777778887777644 345667776666666666666665543322 222233445555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 334 QEAADEECSLRNLVASLKLELEDVQKECAELKEKEAEM 371 (582)
Q Consensus 334 ek~~eE~~~l~~~v~SLr~ELek~K~el~~Lke~E~~a 371 (582)
+......-.++....-....+++.+..+..++......
T Consensus 321 ~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el~~~ 358 (1072)
T KOG0979|consen 321 EEKKNKLESLKKAAEKRQKRIEKAKKMILDAQAELQET 358 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 55555555555556666666666666666665554444
No 162
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=21.22 E-value=6.5e+02 Score=23.17 Aligned_cols=98 Identities=21% Similarity=0.271 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHhhhccH--HhHHHHHHHHHHhHHHHHHHHHHHHHHhHhhH--HH--HHHHHHHHHHHHHHHH----H
Q 037857 266 AAQEAAENKLNSLKKEYDP--QLTENLEIQLAQTTEEIKVLQKQMKQAHAAEM--DS--MRAVTAELNKATKSLQ----E 335 (582)
Q Consensus 266 ~~l~e~e~~l~~Lk~el~~--el~~~LE~kL~et~~~ie~Lq~el~~~~~~e~--~s--v~s~~~ELeeaK~~Le----k 335 (582)
..+++--+++..|..++.. ...+.||++|.+- ..+.++|.......- .- ---++-+|++++.+++ -
T Consensus 5 ~kmee~~~kyq~LQk~l~k~~~~rqkle~qL~En----k~V~~Eldlle~d~~VYKliGpvLvkqel~EAr~nV~kRlef 80 (120)
T KOG3478|consen 5 KKMEEEANKYQNLQKELEKYVESRQKLETQLQEN----KIVLEELDLLEEDSNVYKLIGPVLVKQELEEARTNVGKRLEF 80 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----HHHHHHHHHhcccchHHHHhcchhhHHHHHHHHhhHHHHHHH
Confidence 3444444556666665532 3445566666542 223333332211100 00 0246778988887755 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 336 AADEECSLRNLVASLKLELEDVQKECAELKEK 367 (582)
Q Consensus 336 ~~eE~~~l~~~v~SLr~ELek~K~el~~Lke~ 367 (582)
+..|..++-+.+.-+..++.+.+..+..+++.
T Consensus 81 I~~Eikr~e~~i~d~q~e~~k~R~~v~k~Q~~ 112 (120)
T KOG3478|consen 81 ISKEIKRLENQIRDSQEEFEKQREAVIKLQQA 112 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788888888888888888888888877653
No 163
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=21.11 E-value=9.1e+02 Score=24.80 Aligned_cols=43 Identities=30% Similarity=0.336 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 84 RKEIERTKKLLESSESTRARALGDLERAKRTMLELTTKLKAVK 126 (582)
Q Consensus 84 qeel~k~keql~~aE~~K~qal~ELe~aKr~veeL~~kLe~a~ 126 (582)
..+...|..+|...+..-.++-.+|..+..++..|..++..++
T Consensus 4 Er~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~ae 46 (246)
T PF00769_consen 4 EREKQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAE 46 (246)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666666666777777777888888887777666
No 164
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=20.98 E-value=9.6e+02 Score=27.86 Aligned_cols=39 Identities=21% Similarity=0.256 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 325 ELNKATKSLQEAADEECSLRNLVASLKLELEDVQKECAE 363 (582)
Q Consensus 325 ELeeaK~~Lek~~eE~~~l~~~v~SLr~ELek~K~el~~ 363 (582)
+|-..+..+++++.+.......+.+|+.+|...+..+..
T Consensus 213 ~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~~ 251 (555)
T TIGR03545 213 ELQKIKEEFDKLKKEGKADKQKIKSAKNDLQNDKKQLKA 251 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 344445555555555566666666666666555554443
No 165
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=20.94 E-value=7.7e+02 Score=26.56 Aligned_cols=32 Identities=19% Similarity=0.206 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 163 KQQVDIAREHYAITASKIDAAKQELNRIRQDF 194 (582)
Q Consensus 163 k~eLe~~r~qya~~~aeL~svk~EL~klr~e~ 194 (582)
+.+++.++.+|..+-+.|.+++..|...+..+
T Consensus 138 ~~~~~~~~~~~~~a~a~~~~a~a~l~~a~~~l 169 (385)
T PRK09578 138 ERDYTEAVADERQAKAAVASAKAELARAQLQL 169 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 57788888888887778877777777666554
No 166
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=20.90 E-value=1.3e+03 Score=26.35 Aligned_cols=57 Identities=18% Similarity=0.292 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Q 037857 164 QQVDIAREHYAITASKIDAAKQELNRIRQDFDAALEAKHSALQQAAEAQRLAKVSSERVADLRKQLSAMKE 234 (582)
Q Consensus 164 ~eLe~~r~qya~~~aeL~svk~EL~klr~e~~s~~eak~~A~~~a~ea~~~a~~~~~kveeLt~El~~lke 234 (582)
.+|+..++.|...+.+.++.++++.-+.. ++....++ ....-.++..+.+|+...+|
T Consensus 347 sqlen~k~~~e~~~~e~~~l~~~~~~~e~-------~kk~~e~k-------~~q~q~k~~k~~kel~~~~E 403 (493)
T KOG0804|consen 347 SQLENQKQYYELLITEADSLKQESSDLEA-------EKKIVERK-------LQQLQTKLKKCQKELKEERE 403 (493)
T ss_pred HHHHhHHHHHHHHHHHHHhhhhhhhHHHH-------HHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 46777788888888777777766655533 33333222 22334455666666655553
No 167
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=20.52 E-value=9.3e+02 Score=24.68 Aligned_cols=48 Identities=19% Similarity=0.341 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 320 RAVTAELNKATKSLQEAADEECSLRNLVASLKLELEDVQKECAELKEK 367 (582)
Q Consensus 320 ~s~~~ELeeaK~~Lek~~eE~~~l~~~v~SLr~ELek~K~el~~Lke~ 367 (582)
.-+..+++.+...|..++.+-......+..|-.|+...|.++..++.-
T Consensus 56 rqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 56 RQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555555555555555555555666666665555443
No 168
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=20.05 E-value=1.4e+03 Score=26.56 Aligned_cols=273 Identities=15% Similarity=0.194 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 037857 75 DKETQLLLARKEIERTKKLLESSESTRARALGDLERAKRTMLELTTKLKAVKDSKESAIAAAEHVRKQAKQLEEAKSQKN 154 (582)
Q Consensus 75 ~~e~qL~~aqeel~k~keql~~aE~~K~qal~ELe~aKr~veeL~~kLe~a~~~~~~A~e~sE~~k~r~~ElEq~~~~~~ 154 (582)
.+..+++.+...+.+....+..-|- ..|..+|......|+.|-.-|+.-=.++......+-.-.--+..+..-...
T Consensus 252 ~id~~~~~L~~~l~~~~~~l~~Lel--d~aeeel~~I~e~ie~lYd~lE~EveA~~~V~~~~~~l~~~l~k~ke~n~~-- 327 (570)
T COG4477 252 NIDSRLERLKEQLVENSELLTQLEL--DEAEEELGLIQEKIESLYDLLEREVEAKNVVEENLPILPDYLEKAKENNEH-- 327 (570)
T ss_pred cHHHHHHHHHHHHHHHHhHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHH--
Q ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 037857 155 IGGIAVERKQQVDIAREHYAITASKIDAAKQ---ELNRIRQDFDAALEAKHSALQQAAEAQRLAKVSSERVADLRKQLSA 231 (582)
Q Consensus 155 ~~~~e~a~k~eLe~~r~qya~~~aeL~svk~---EL~klr~e~~s~~eak~~A~~~a~ea~~~a~~~~~kveeLt~El~~ 231 (582)
++.+++.++.-|-..-.+|..++. +|..+...|..+.+.-......=-..+...+...+.+.....+.+-
T Consensus 328 -------L~~Eie~V~~sY~l~e~e~~~vr~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~ 400 (570)
T COG4477 328 -------LKEEIERVKESYRLAETELGSVRKFEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEK 400 (570)
T ss_pred -------HHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHH
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHhhhccHHhHHHHHHHHHHhHHHHHHHHHHHHHH
Q 037857 232 MKEGIKQIKLAAQEATDEQARIVSEKDTLMQSYKAAQEAAENKLNSLKKEYDPQLTENLEIQLAQTTEEIKVLQKQMKQA 311 (582)
Q Consensus 232 lke~l~~~~~a~~eA~ee~~~i~~e~~~~~~~~~~~l~e~e~~l~~Lk~el~~el~~~LE~kL~et~~~ie~Lq~el~~~ 311 (582)
..+.|-+.+-...+|.+.. ..|...+.+....++.=+ + |-+=.++=.-+..+...+..
T Consensus 401 ~~e~L~~LrkdEl~Are~l-----------~~~~~~l~eikR~mek~n--L-PGlPe~~l~l~~~~~~~i~~-------- 458 (570)
T COG4477 401 VQEHLTSLRKDELEARENL-----------ERLKSKLHEIKRYMEKSN--L-PGLPETFLSLFFTAGHEIQD-------- 458 (570)
T ss_pred HHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHcC--C-CCCcHHHHHHHHhhhhHHHH--------
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHhhhhhHhhh
Q 037857 312 HAAEMDSMRAVTAELNKATKSLQEAADEECSLRNLVASLKLELEDVQKECAELKEKEAEMEVIKGALMESIAKESAVECE 391 (582)
Q Consensus 312 ~~~e~~sv~s~~~ELeeaK~~Lek~~eE~~~l~~~v~SLr~ELek~K~el~~Lke~E~~a~~~~~~eL~~~kse~a~~~~ 391 (582)
+..+|.+.-.+++.+..-+......|..|..+...+-....-..+.-+ +.
T Consensus 459 ----------l~~eLse~pinm~~v~~~v~~a~~~m~~l~~~t~e~ve~a~LaE~lIQ--------------------Y~ 508 (570)
T COG4477 459 ----------LMKELSEVPINMEAVSALVDIATEDMNTLEDETEEVVENAVLAEQLIQ--------------------YG 508 (570)
T ss_pred ----------HHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HH
Q ss_pred hhhhHHHHHHHHHHHHHHH
Q 037857 392 DSLNEHKLELEKLSAETET 410 (582)
Q Consensus 392 e~~~~l~~~lqql~~Eae~ 410 (582)
++|+.-...+++-=.+++.
T Consensus 509 NRYRs~~~~v~~~l~eAe~ 527 (570)
T COG4477 509 NRYRSRNAEVAKSLNEAER 527 (570)
T ss_pred HHHHhhhHHHHHHHHHHHH
Done!