Query 037857
Match_columns 582
No_of_seqs 155 out of 185
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 08:03:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037857.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037857hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 97.8 0.031 1.1E-06 53.6 43.8 51 76-126 11-61 (284)
2 1c1g_A Tropomyosin; contractIl 97.6 0.06 2E-06 51.5 44.1 49 78-126 20-68 (284)
3 1i84_S Smooth muscle myosin he 97.2 0.0014 4.7E-08 78.9 11.7 45 79-123 858-902 (1184)
4 1i84_S Smooth muscle myosin he 97.1 0.0014 4.8E-08 78.9 11.1 45 80-124 873-917 (1184)
5 3na7_A HP0958; flagellar bioge 94.6 4 0.00014 40.4 21.2 49 319-367 34-82 (256)
6 2v71_A Nuclear distribution pr 93.1 6.3 0.00022 37.8 21.0 98 259-366 10-109 (189)
7 3vkg_A Dynein heavy chain, cyt 93.0 25 0.00084 46.7 28.4 54 510-563 2340-2403(3245)
8 2v71_A Nuclear distribution pr 92.6 7.4 0.00025 37.3 20.2 39 161-199 14-52 (189)
9 3vkg_A Dynein heavy chain, cyt 91.8 38 0.0013 45.0 27.9 155 395-566 1937-2094(3245)
10 3ol1_A Vimentin; structural ge 90.1 6.2 0.00021 34.9 13.4 51 83-133 18-68 (119)
11 3na7_A HP0958; flagellar bioge 88.8 19 0.00066 35.5 26.2 29 171-199 90-118 (256)
12 4gkw_A Spindle assembly abnorm 77.1 42 0.0014 30.3 21.4 60 285-362 98-157 (167)
13 2jee_A YIIU; FTSZ, septum, coi 76.3 32 0.0011 28.5 11.1 67 284-368 5-71 (81)
14 3swk_A Vimentin; cytoskeleton, 73.6 20 0.00068 29.9 9.0 47 87-133 2-48 (86)
15 3u1c_A Tropomyosin alpha-1 cha 69.4 52 0.0018 28.0 12.0 95 395-495 5-99 (101)
16 2dfs_A Myosin-5A; myosin-V, in 68.4 2E+02 0.0068 34.3 19.7 28 336-363 982-1009(1080)
17 1ytv_M V1AR, vasopressin V1A r 63.5 2.1 7.2E-05 35.7 0.9 12 3-14 5-16 (84)
18 1ic2_A Tropomyosin alpha chain 62.1 53 0.0018 26.7 9.3 62 73-134 8-69 (81)
19 3i00_A HIP-I, huntingtin-inter 61.8 51 0.0017 29.2 9.7 39 396-434 44-82 (120)
20 2dfs_A Myosin-5A; myosin-V, in 61.8 2.6E+02 0.0089 33.3 19.2 68 170-240 976-1043(1080)
21 2eqb_B RAB guanine nucleotide 60.2 81 0.0028 26.9 13.0 75 76-150 17-92 (97)
22 3tnu_A Keratin, type I cytoske 55.5 1.1E+02 0.0038 27.0 12.0 38 166-203 79-116 (131)
23 2e7s_A RAB guanine nucleotide 55.4 33 0.0011 31.0 7.4 59 164-229 25-83 (135)
24 3hnw_A Uncharacterized protein 53.1 1.3E+02 0.0044 27.1 11.7 34 322-355 101-134 (138)
25 3tnu_B Keratin, type II cytosk 52.8 1.2E+02 0.0041 26.6 12.8 38 166-203 77-114 (129)
26 2b9c_A Striated-muscle alpha t 49.0 1.6E+02 0.0053 26.8 12.0 63 498-560 50-112 (147)
27 3oja_B Anopheles plasmodium-re 49.0 2.8E+02 0.0095 29.8 15.4 20 219-238 455-474 (597)
28 3s4r_A Vimentin; alpha-helix, 48.3 1.2E+02 0.0041 25.4 11.7 39 322-360 54-92 (93)
29 3hrn_A Transient receptor pote 47.8 80 0.0027 25.0 7.4 45 479-534 3-47 (64)
30 2jee_A YIIU; FTSZ, septum, coi 46.2 1.3E+02 0.0043 24.9 10.1 51 520-570 19-69 (81)
31 3u59_A Tropomyosin beta chain; 45.7 1.4E+02 0.0046 25.2 12.9 75 74-148 12-86 (101)
32 2v66_B Nuclear distribution pr 45.3 1.6E+02 0.0053 25.8 14.0 25 285-309 77-101 (111)
33 2eqb_B RAB guanine nucleotide 44.6 1.5E+02 0.0051 25.3 13.5 61 162-229 3-63 (97)
34 3ol1_A Vimentin; structural ge 43.9 1.6E+02 0.0055 25.6 13.4 37 162-198 25-61 (119)
35 3o0z_A RHO-associated protein 42.2 2.2E+02 0.0075 26.6 19.7 36 318-353 98-133 (168)
36 3u1c_A Tropomyosin alpha-1 cha 41.7 1.6E+02 0.0055 24.9 12.9 75 74-148 12-86 (101)
37 2fxo_A Myosin heavy chain, car 40.2 1.9E+02 0.0065 25.4 19.1 110 77-195 12-121 (129)
38 1ic2_A Tropomyosin alpha chain 38.7 1.5E+02 0.0053 23.8 11.4 60 396-455 3-62 (81)
39 2efr_A General control protein 37.7 2.4E+02 0.0084 25.9 21.3 104 329-451 26-129 (155)
40 3m91_A Proteasome-associated A 36.9 1.1E+02 0.0037 23.1 6.5 37 161-197 13-49 (51)
41 3mq7_A Bone marrow stromal ant 36.5 2.2E+02 0.0076 25.0 12.1 41 321-361 29-69 (121)
42 3hnw_A Uncharacterized protein 35.3 2.5E+02 0.0084 25.2 11.4 50 319-368 77-126 (138)
43 1jcd_A Major outer membrane li 34.0 1.5E+02 0.0052 22.4 7.5 29 415-443 20-48 (52)
44 3swk_A Vimentin; cytoskeleton, 33.5 2E+02 0.0069 23.6 11.0 72 162-233 5-83 (86)
45 3a7p_A Autophagy protein 16; c 31.0 3.2E+02 0.011 25.1 10.7 48 319-366 84-131 (152)
46 3s4r_A Vimentin; alpha-helix, 30.3 93 0.0032 26.1 5.9 39 84-122 55-93 (93)
47 3oja_B Anopheles plasmodium-re 29.4 5.5E+02 0.019 27.4 17.6 9 462-470 572-580 (597)
48 2w83_C C-JUN-amino-terminal ki 28.9 2.4E+02 0.0081 23.0 8.9 25 219-243 36-60 (77)
49 3o0z_A RHO-associated protein 28.7 3.6E+02 0.012 25.1 23.2 74 176-252 56-129 (168)
50 2f1m_A Acriflavine resistance 26.8 3.2E+02 0.011 26.1 10.1 32 163-194 97-128 (277)
51 4e61_A Protein BIM1; EB1-like 26.2 1.3E+02 0.0045 26.0 6.1 37 317-353 4-40 (106)
52 1deq_A Fibrinogen (alpha chain 23.7 6.5E+02 0.022 26.4 14.9 28 216-243 63-90 (390)
53 1txp_A HnRNP C, heterogeneous 22.6 67 0.0023 21.3 2.7 21 180-200 1-21 (28)
54 2fxo_A Myosin heavy chain, car 21.9 4E+02 0.014 23.2 15.4 20 224-243 17-36 (129)
55 3trt_A Vimentin; cytoskeleton, 21.6 3E+02 0.01 21.6 10.2 30 329-358 47-76 (77)
56 3qwe_A GMIP, GEM-interacting p 21.4 6.2E+02 0.021 25.3 17.8 99 89-194 116-214 (279)
57 3lay_A Zinc resistance-associa 20.7 2.8E+02 0.0096 25.9 7.8 67 160-243 70-136 (175)
58 1l8d_A DNA double-strand break 20.7 3.7E+02 0.013 22.4 11.6 37 319-355 66-102 (112)
59 2efr_A General control protein 20.6 4.9E+02 0.017 23.8 24.3 32 325-356 120-151 (155)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=97.77 E-value=0.031 Score=53.60 Aligned_cols=51 Identities=8% Similarity=0.036 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 76 KETQLLLARKEIERTKKLLESSESTRARALGDLERAKRTMLELTTKLKAVK 126 (582)
Q Consensus 76 ~e~qL~~aqeel~k~keql~~aE~~K~qal~ELe~aKr~veeL~~kLe~a~ 126 (582)
+..+++.+...+..+...+......-..+..++...+..+..+...+....
T Consensus 11 l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (284)
T 1c1g_A 11 LKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYS 61 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555554444444444444444444444444333
No 2
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=97.58 E-value=0.06 Score=51.55 Aligned_cols=49 Identities=10% Similarity=0.058 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 78 TQLLLARKEIERTKKLLESSESTRARALGDLERAKRTMLELTTKLKAVK 126 (582)
Q Consensus 78 ~qL~~aqeel~k~keql~~aE~~K~qal~ELe~aKr~veeL~~kLe~a~ 126 (582)
.++..+..++..+...+...+..-..+..++...+..+..+...+....
T Consensus 20 ~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (284)
T 1c1g_A 20 DRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQ 68 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444444433
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.16 E-value=0.0014 Score=78.92 Aligned_cols=45 Identities=18% Similarity=0.151 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 79 QLLLARKEIERTKKLLESSESTRARALGDLERAKRTMLELTTKLK 123 (582)
Q Consensus 79 qL~~aqeel~k~keql~~aE~~K~qal~ELe~aKr~veeL~~kLe 123 (582)
++...++++..++..+...+.....+...+......+.++...|.
T Consensus 858 El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~ 902 (1184)
T 1i84_S 858 EMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQ 902 (1184)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555544444444444444444444444443
No 4
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.12 E-value=0.0014 Score=78.87 Aligned_cols=45 Identities=9% Similarity=-0.042 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 80 LLLARKEIERTKKLLESSESTRARALGDLERAKRTMLELTTKLKA 124 (582)
Q Consensus 80 L~~aqeel~k~keql~~aE~~K~qal~ELe~aKr~veeL~~kLe~ 124 (582)
|..++..+..+..++...+..+..+..+|......+.++...+..
T Consensus 873 L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l~~ 917 (1184)
T 1i84_S 873 QQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVR 917 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444444444444444333333
No 5
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=94.57 E-value=4 Score=40.43 Aligned_cols=49 Identities=16% Similarity=0.270 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 319 MRAVTAELNKATKSLQEAADEECSLRNLVASLKLELEDVQKECAELKEK 367 (582)
Q Consensus 319 v~s~~~ELeeaK~~Lek~~eE~~~l~~~v~SLr~ELek~K~el~~Lke~ 367 (582)
+..+..++...+..+..+..++..+...+..+..++..++..+...+.+
T Consensus 34 l~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~ 82 (256)
T 3na7_A 34 LDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKK 82 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555555555555555555554443
No 6
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=93.14 E-value=6.3 Score=37.75 Aligned_cols=98 Identities=11% Similarity=0.151 Sum_probs=60.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhhccH--HhHHHHHHHHHHhHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHH
Q 037857 259 TLMQSYKAAQEAAENKLNSLKKEYDP--QLTENLEIQLAQTTEEIKVLQKQMKQAHAAEMDSMRAVTAELNKATKSLQEA 336 (582)
Q Consensus 259 ~~~~~~~~~l~e~e~~l~~Lk~el~~--el~~~LE~kL~et~~~ie~Lq~el~~~~~~e~~sv~s~~~ELeeaK~~Lek~ 336 (582)
.....|+....+....+.+|+.+|+. +-++.||..|... |+.+.++..... ..+..+..|++..|..+...
T Consensus 10 ee~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~e---L~~~Ek~~~~L~----~~~~~L~~E~e~~k~K~~~~ 82 (189)
T 2v71_A 10 EETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQ---LVQAEQRNRDLQ----ADNQRLKYEVEALKEKLEHQ 82 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 44567888777777788888877754 5577777776543 333333322222 34677888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 337 ADEECSLRNLVASLKLELEDVQKECAELKE 366 (582)
Q Consensus 337 ~eE~~~l~~~v~SLr~ELek~K~el~~Lke 366 (582)
..+... .+.+|..++...+.....|+.
T Consensus 83 ~~e~~~---~~~~Lq~el~~l~~~~~~l~~ 109 (189)
T 2v71_A 83 YAQSYK---QVSVLEDDLSQTRAIKEQLHK 109 (189)
T ss_dssp HHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 777333 344555555555544444443
No 7
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=93.00 E-value=25 Score=46.69 Aligned_cols=54 Identities=9% Similarity=0.115 Sum_probs=37.3
Q ss_pred HHHHhhhHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhH
Q 037857 510 LVINARKNEADKKLE----------ANLTDVEEIKNATEAALKSAETATAAQSMVEAELRRWRQ 563 (582)
Q Consensus 510 e~akase~e~l~kLe----------~~~~eie~~k~ale~Al~raE~A~~aK~avE~ELRrwR~ 563 (582)
...+.-|..+|..|. .+..-++.+|..-.+...+.+.|+.....++..=-..|+
T Consensus 2340 ~~L~~LEd~lL~~Ls~s~GniLdd~~LI~~L~~sK~~s~eI~~kl~~a~~te~~I~~~R~~Yrp 2403 (3245)
T 3vkg_A 2340 VKLRILEKSLLNALSQASGNILDDDSVISTLETLKKETTEIALKVEETETVMQEISEVSALYNP 2403 (3245)
T ss_dssp HHHHTTTHHHHHHHHTTSSCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHH
T ss_pred HHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 346677888888884 456677788888888888888887776666654444443
No 8
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=92.64 E-value=7.4 Score=37.26 Aligned_cols=39 Identities=8% Similarity=0.106 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 161 ERKQQVDIAREHYAITASKIDAAKQELNRIRQDFDAALE 199 (582)
Q Consensus 161 a~k~eLe~~r~qya~~~aeL~svk~EL~klr~e~~s~~e 199 (582)
-||......+.+|...=.+|.--...-..|..++..-++
T Consensus 14 ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~ 52 (189)
T 2v71_A 14 YWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLV 52 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477777766666666666666555555555555544443
No 9
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=91.77 E-value=38 Score=44.97 Aligned_cols=155 Identities=19% Similarity=0.226 Sum_probs=87.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCC
Q 037857 395 NEHKLELEKLSAETETAMKEEAVIKEEAEHLKQAAEAARMLAKEAEKNLQLALSEVEQAKASERKALGELNVLSIKPDSA 474 (582)
Q Consensus 395 ~~l~~~lqql~~Eae~ak~eae~~~~E~~k~k~E~e~~ka~~~t~E~rL~aa~kE~EAakasEa~Alaeik~l~e~s~~~ 474 (582)
..|...|.....+.+....+++.+-.++..-+.+++..+..+...+..+.....++.+-|. .--+.|.+- .|
T Consensus 1937 ~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~~k~~v~~~~~~~~~~~~ei~~~k~------~~e~dL~~A-~P- 2008 (3245)
T 3vkg_A 1937 KDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKV------KAYADLEKA-EP- 2008 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHCC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHhhc-CC-
Confidence 3455566666666666666666666666666666666666555555444433333322221 111112211 11
Q ss_pred CCccccHHhhHHhhHHHHHHHHHH---HhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037857 475 SNITISKEEFDSLNKAVEESVAVA---EKKLAEAEAQLLVINARKNEADKKLEANLTDVEEIKNATEAALKSAETATAAQ 551 (582)
Q Consensus 475 ~~Itis~eEye~L~~ka~eaEe~a---~kkvaaA~aqve~akase~e~l~kLe~~~~eie~~k~ale~Al~raE~A~~aK 551 (582)
- .+|..+..+++... ..+...+.+.+....+.=...-.+.+.++.+....+...+....+.++|+.==
T Consensus 2009 a---------~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li 2079 (3245)
T 3vkg_A 2009 T---------GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALL 2079 (3245)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C---------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 66666666555332 22333333333333332223335556677777888888888999999999999
Q ss_pred hHHHHHHHHhhHHHH
Q 037857 552 SMVEAELRRWRQQEE 566 (582)
Q Consensus 552 ~avE~ELRrwR~e~~ 566 (582)
.++-+|--||.....
T Consensus 2080 ~gL~~Ek~RW~~~~~ 2094 (3245)
T 3vkg_A 2080 DNLNSERGRWEQQSE 2094 (3245)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HhhhhccccHHHHHH
Confidence 999999999987755
No 10
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=90.11 E-value=6.2 Score=34.85 Aligned_cols=51 Identities=16% Similarity=0.234 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 83 ARKEIERTKKLLESSESTRARALGDLERAKRTMLELTTKLKAVKDSKESAI 133 (582)
Q Consensus 83 aqeel~k~keql~~aE~~K~qal~ELe~aKr~veeL~~kLe~a~~~~~~A~ 133 (582)
-...|..++.++...-..++++..++..++..+++++.+.+.-..-+..+.
T Consensus 18 ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E 68 (119)
T 3ol1_A 18 YEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAE 68 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 556788999999999999999999999999999999999987654444433
No 11
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=88.83 E-value=19 Score=35.45 Aligned_cols=29 Identities=14% Similarity=0.157 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 171 EHYAITASKIDAAKQELNRIRQDFDAALE 199 (582)
Q Consensus 171 ~qya~~~aeL~svk~EL~klr~e~~s~~e 199 (582)
..|.....++.+.+.++..+..++-.+.+
T Consensus 90 kE~~aL~kEie~~~~~i~~lE~eile~~e 118 (256)
T 3na7_A 90 RELRSLNIEEDIAKERSNQANREIENLQN 118 (256)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35777777777777666666555544333
No 12
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=77.13 E-value=42 Score=30.27 Aligned_cols=60 Identities=18% Similarity=0.277 Sum_probs=37.8
Q ss_pred HhHHHHHHHHHHhHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 285 QLTENLEIQLAQTTEEIKVLQKQMKQAHAAEMDSMRAVTAELNKATKSLQEAADEECSLRNLVASLKLELEDVQKECA 362 (582)
Q Consensus 285 el~~~LE~kL~et~~~ie~Lq~el~~~~~~e~~sv~s~~~ELeeaK~~Lek~~eE~~~l~~~v~SLr~ELek~K~el~ 362 (582)
-...+||+-|.+.-+-+++|.. .++.+.+||++-|..++.+ +.+.++|..|=+.++..++
T Consensus 98 RKLrELEADLKEKDsMVe~LT~-----------TiG~LrKELEdEklK~~E~-------MdSFE~LkvENE~vkerl~ 157 (167)
T 4gkw_A 98 RKLGELEADLKEKDSMVESLTE-----------TIGILRKELENEKLKAAEN-------MDSFEKLSMENENLKEKIA 157 (167)
T ss_dssp HHTHHHHHTHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHhhhhHHHHHHHH-----------HHHHHHHHHHHHHHHHHHH-------HHHHHHHhhhhHhHHHHHH
Confidence 3456677777665444444433 5667778888777666544 5566777777776666554
No 13
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=76.29 E-value=32 Score=28.52 Aligned_cols=67 Identities=15% Similarity=0.217 Sum_probs=48.0
Q ss_pred HHhHHHHHHHHHHhHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 284 PQLTENLEIQLAQTTEEIKVLQKQMKQAHAAEMDSMRAVTAELNKATKSLQEAADEECSLRNLVASLKLELEDVQKECAE 363 (582)
Q Consensus 284 ~el~~~LE~kL~et~~~ie~Lq~el~~~~~~e~~sv~s~~~ELeeaK~~Lek~~eE~~~l~~~v~SLr~ELek~K~el~~ 363 (582)
.++...||.|+..+...|.. +.+|+++.|..-.....+...++...+.|..|..+.+.++..
T Consensus 5 ~ElleqLE~KIq~avdtI~l------------------LqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~ 66 (81)
T 2jee_A 5 LEVFEKLEAKVQQAIDTITL------------------LQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNG 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 35777888888776555555 455666666666677777777788888888888888888777
Q ss_pred HHHHH
Q 037857 364 LKEKE 368 (582)
Q Consensus 364 Lke~E 368 (582)
-+.+-
T Consensus 67 wq~Rl 71 (81)
T 2jee_A 67 WQERL 71 (81)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66544
No 14
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=73.60 E-value=20 Score=29.85 Aligned_cols=47 Identities=15% Similarity=0.232 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 87 IERTKKLLESSESTRARALGDLERAKRTMLELTTKLKAVKDSKESAI 133 (582)
Q Consensus 87 l~k~keql~~aE~~K~qal~ELe~aKr~veeL~~kLe~a~~~~~~A~ 133 (582)
|..++.|+..+-..++++..|++.++-.+++++.|.+.-..-+..+.
T Consensus 2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E 48 (86)
T 3swk_A 2 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAE 48 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999986654444444
No 15
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=69.39 E-value=52 Score=27.97 Aligned_cols=95 Identities=16% Similarity=0.176 Sum_probs=65.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCC
Q 037857 395 NEHKLELEKLSAETETAMKEEAVIKEEAEHLKQAAEAARMLAKEAEKNLQLALSEVEQAKASERKALGELNVLSIKPDSA 474 (582)
Q Consensus 395 ~~l~~~lqql~~Eae~ak~eae~~~~E~~k~k~E~e~~ka~~~t~E~rL~aa~kE~EAakasEa~Alaeik~l~e~s~~~ 474 (582)
..+-..|+.|..+++.|.-.++.+...+..+.....+....+.....|++.+-.+++.+...=..|...+..- .
T Consensus 5 daIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~------e 78 (101)
T 3u1c_A 5 DAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFA------E 78 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------H
Confidence 4466788888999999999999999999999999999999999999999988888886653211221111111 1
Q ss_pred CCccccHHhhHHhhHHHHHHH
Q 037857 475 SNITISKEEFDSLNKAVEESV 495 (582)
Q Consensus 475 ~~Itis~eEye~L~~ka~eaE 495 (582)
...+-+-.+-.+|++|++-.|
T Consensus 79 k~~~~aE~ev~~L~RriqllE 99 (101)
T 3u1c_A 79 ENAAKAESEVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 122334456667777776544
No 16
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=68.41 E-value=2e+02 Score=34.29 Aligned_cols=28 Identities=32% Similarity=0.361 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 336 AADEECSLRNLVASLKLELEDVQKECAE 363 (582)
Q Consensus 336 ~~eE~~~l~~~v~SLr~ELek~K~el~~ 363 (582)
+...+..+...++.|+.++.+...+...
T Consensus 982 ~~~~v~~L~~e~~~l~~~~~~~~ke~~~ 1009 (1080)
T 2dfs_A 982 ATNRVLSLQEEIAKLRKELHQTQTEKKT 1009 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444444443333333
No 17
>1ytv_M V1AR, vasopressin V1A receptor; GPCR, fusion protein, maltose- binding protein, sugar binding protein, hormone receptor; HET: MAL; 1.80A {Homo sapiens}
Probab=63.46 E-value=2.1 Score=35.71 Aligned_cols=12 Identities=83% Similarity=1.008 Sum_probs=9.2
Q ss_pred CCCCCCCCcccc
Q 037857 3 NNNNNNNNNNII 14 (582)
Q Consensus 3 ~~~~~~~~~~~~ 14 (582)
|||||||||||-
T Consensus 5 ~~~~~~~~~~Mg 16 (84)
T 1ytv_M 5 NNNNNNNNNNLG 16 (84)
T ss_pred ccCCCCcccccc
Confidence 677788888874
No 18
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=62.07 E-value=53 Score=26.67 Aligned_cols=62 Identities=11% Similarity=0.043 Sum_probs=49.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 73 VLDKETQLLLARKEIERTKKLLESSESTRARALGDLERAKRTMLELTTKLKAVKDSKESAIA 134 (582)
Q Consensus 73 v~~~e~qL~~aqeel~k~keql~~aE~~K~qal~ELe~aKr~veeL~~kLe~a~~~~~~A~e 134 (582)
...+..+.+.++..+..+...+..++....++..|+..-++.+.-|...|+.++..-..+..
T Consensus 8 m~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~ 69 (81)
T 1ic2_A 8 MQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQE 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456688888999999999999999988899999888888888888888887754444443
No 19
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=61.83 E-value=51 Score=29.15 Aligned_cols=39 Identities=15% Similarity=0.202 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037857 396 EHKLELEKLSAETETAMKEEAVIKEEAEHLKQAAEAARM 434 (582)
Q Consensus 396 ~l~~~lqql~~Eae~ak~eae~~~~E~~k~k~E~e~~ka 434 (582)
.|...+-+|..|.+..+.....+..+...++.+.+..+.
T Consensus 44 ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~ 82 (120)
T 3i00_A 44 QLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRR 82 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666666666666655555433
No 20
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=61.78 E-value=2.6e+02 Score=33.30 Aligned_cols=68 Identities=13% Similarity=0.273 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhHHHHH
Q 037857 170 REHYAITASKIDAAKQELNRIRQDFDAALEAKHSALQQAAEAQRLAKVSSERVADLRKQLSAMKEGIKQIK 240 (582)
Q Consensus 170 r~qya~~~aeL~svk~EL~klr~e~~s~~eak~~A~~~a~ea~~~a~~~~~kveeLt~El~~lke~l~~~~ 240 (582)
.......-..+....+|+..++.+|..+..++.....+..... ..-..+|..|..|...|+..++...
T Consensus 976 ~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~---~~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 976 EEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYK---HETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455566777777788888888777777776665555444 2444788888888888877776653
No 21
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=60.21 E-value=81 Score=26.95 Aligned_cols=75 Identities=16% Similarity=0.210 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 76 KETQLLLARKEIERTKKLLESSESTRARALGDLERAKRTMLELTTKL-KAVKDSKESAIAAAEHVRKQAKQLEEAK 150 (582)
Q Consensus 76 ~e~qL~~aqeel~k~keql~~aE~~K~qal~ELe~aKr~veeL~~kL-e~a~~~~~~A~e~sE~~k~r~~ElEq~~ 150 (582)
++.++..+..++.++...+......+..|..++......+++|+..| +.|+.=...|.......+.+...|+..+
T Consensus 17 le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L~~qL 92 (97)
T 2eqb_B 17 LKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQL 92 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555556666665555556666666666666667777665 5666555555555556666666654433
No 22
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=55.50 E-value=1.1e+02 Score=27.00 Aligned_cols=38 Identities=13% Similarity=0.260 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 166 VDIAREHYAITASKIDAAKQELNRIRQDFDAALEAKHS 203 (582)
Q Consensus 166 Le~~r~qya~~~aeL~svk~EL~klr~e~~s~~eak~~ 203 (582)
+...+..-...=.+|..++.++...-.+|..+++-|..
T Consensus 79 l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~ 116 (131)
T 3tnu_A 79 LAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTR 116 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455567778888888989999999998854
No 23
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=55.39 E-value=33 Score=31.04 Aligned_cols=59 Identities=22% Similarity=0.333 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 037857 164 QQVDIAREHYAITASKIDAAKQELNRIRQDFDAALEAKHSALQQAAEAQRLAKVSSERVADLRKQL 229 (582)
Q Consensus 164 ~eLe~~r~qya~~~aeL~svk~EL~klr~e~~s~~eak~~A~~~a~ea~~~a~~~~~kveeLt~El 229 (582)
.+++..+.+|......|..+..|+.+|..+|..-...+..|. ..-..+..-+++||.-|
T Consensus 25 ~~le~l~~~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE-------~~~~~ie~ElE~LTasL 83 (135)
T 2e7s_A 25 ENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAE-------EEADKLNKEVEDLTASL 83 (135)
T ss_dssp HHHHHHHHHHHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHH-------HTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 455666667777777788888888888777765555554433 33345566677776655
No 24
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=53.07 E-value=1.3e+02 Score=27.07 Aligned_cols=34 Identities=18% Similarity=0.261 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 322 VTAELNKATKSLQEAADEECSLRNLVASLKLELE 355 (582)
Q Consensus 322 ~~~ELeeaK~~Lek~~eE~~~l~~~v~SLr~ELe 355 (582)
+..+++.++..+.+++.+...|..-+..|.++|+
T Consensus 101 ~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 101 AQIKAESSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555555544443
No 25
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=52.78 E-value=1.2e+02 Score=26.63 Aligned_cols=38 Identities=21% Similarity=0.379 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 166 VDIAREHYAITASKIDAAKQELNRIRQDFDAALEAKHS 203 (582)
Q Consensus 166 Le~~r~qya~~~aeL~svk~EL~klr~e~~s~~eak~~ 203 (582)
+...+..-...=.+|..++.++...-.+|..+++-|..
T Consensus 77 l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~ 114 (129)
T 3tnu_B 77 LKDARNKLAELEEALQKAKQDMARLLREYQELMNTKLA 114 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455567778888999999999999988854
No 26
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=49.05 E-value=1.6e+02 Score=26.84 Aligned_cols=63 Identities=27% Similarity=0.266 Sum_probs=56.5
Q ss_pred HHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 037857 498 AEKKLAEAEAQLLVINARKNEADKKLEANLTDVEEIKNATEAALKSAETATAAQSMVEAELRR 560 (582)
Q Consensus 498 a~kkvaaA~aqve~akase~e~l~kLe~~~~eie~~k~ale~Al~raE~A~~aK~avE~ELRr 560 (582)
...|+..-..|+..|+..=.++-.|.+++.+-+...-..|+.|-.|++.|+..-..+|.+|+-
T Consensus 50 deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~ 112 (147)
T 2b9c_A 50 DEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKT 112 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334667777788888888889999999999999999999999999999999999999999984
No 27
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=48.99 E-value=2.8e+02 Score=29.76 Aligned_cols=20 Identities=20% Similarity=0.333 Sum_probs=10.6
Q ss_pred hHHHHHHHHHHHHHHhhHHH
Q 037857 219 SERVADLRKQLSAMKEGIKQ 238 (582)
Q Consensus 219 ~~kveeLt~El~~lke~l~~ 238 (582)
...+.++..+|..+++.+..
T Consensus 455 ~~e~~~~~~~i~~l~~~~~~ 474 (597)
T 3oja_B 455 EAEVNELRAEVQQLTNEQIQ 474 (597)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555544
No 28
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=48.27 E-value=1.2e+02 Score=25.38 Aligned_cols=39 Identities=5% Similarity=0.206 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 322 VTAELNKATKSLQEAADEECSLRNLVASLKLELEDVQKE 360 (582)
Q Consensus 322 ~~~ELeeaK~~Lek~~eE~~~l~~~v~SLr~ELek~K~e 360 (582)
...+|.+.+..|+.+..+-..+..-++.|..+++..|..
T Consensus 54 ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~K 92 (93)
T 3s4r_A 54 YEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREK 92 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 467788888888888888777777777777777766643
No 29
>3hrn_A Transient receptor potential (Trp) channel subfamily P member 2 (TRPP2); coiled coil, helix bundle, trimer, calcium, disease mutation, glycoprotein; 1.90A {Homo sapiens} PDB: 3hro_A
Probab=47.77 E-value=80 Score=24.97 Aligned_cols=45 Identities=20% Similarity=0.158 Sum_probs=31.4
Q ss_pred ccHHhhHHhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 037857 479 ISKEEFDSLNKAVEESVAVAEKKLAEAEAQLLVINARKNEADKKLEANLTDVEEIK 534 (582)
Q Consensus 479 is~eEye~L~~ka~eaEe~a~kkvaaA~aqve~akase~e~l~kLe~~~~eie~~k 534 (582)
+|.+||+.|++|+-.-|-. +...+++|++ ++.||+...+---.++
T Consensus 3 VS~EEF~~L~rRVlqLE~s----l~gI~SqIDa-------V~~KL~~~Er~k~~~r 47 (64)
T 3hrn_A 3 VSYEEFQVLVRRVDRMEHS----IGSIVSKIDA-------VIVKLEIMERAKLKRR 47 (64)
T ss_dssp CCHHHHHHHHHHHHHHHHH----HHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH----HHHHHHHHHH-------HHHHHHHHHHhhhHHH
Confidence 6889999999999876664 3456677776 6666666655433333
No 30
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=46.21 E-value=1.3e+02 Score=24.95 Aligned_cols=51 Identities=16% Similarity=0.291 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHhh
Q 037857 520 DKKLEANLTDVEEIKNATEAALKSAETATAAQSMVEAELRRWRQQEEQWLR 570 (582)
Q Consensus 520 l~kLe~~~~eie~~k~ale~Al~raE~A~~aK~avE~ELRrwR~e~~q~r~ 570 (582)
+..+.-+..+|++.|..-.......+.+..+.-....+..+|+.++..|..
T Consensus 19 vdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~ 69 (81)
T 2jee_A 19 IDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQE 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 334445556777777777777777788888888999999999999988864
No 31
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=45.75 E-value=1.4e+02 Score=25.21 Aligned_cols=75 Identities=12% Similarity=0.059 Sum_probs=57.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 74 LDKETQLLLARKEIERTKKLLESSESTRARALGDLERAKRTMLELTTKLKAVKDSKESAIAAAEHVRKQAKQLEE 148 (582)
Q Consensus 74 ~~~e~qL~~aqeel~k~keql~~aE~~K~qal~ELe~aKr~veeL~~kLe~a~~~~~~A~e~sE~~k~r~~ElEq 148 (582)
..+..+.+.+......+..++..++....++..|+..-++.+.-|...++.++..-..+...++.....+.+.|.
T Consensus 12 ~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~ 86 (101)
T 3u59_A 12 QMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEA 86 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567778888888888888888888888999988888888888888888876666666666666555555444
No 32
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=45.30 E-value=1.6e+02 Score=25.76 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=16.1
Q ss_pred HhHHHHHHHHHHhHHHHHHHHHHHH
Q 037857 285 QLTENLEIQLAQTTEEIKVLQKQMK 309 (582)
Q Consensus 285 el~~~LE~kL~et~~~ie~Lq~el~ 309 (582)
.-..|+|.|+..+..-...|+.+|.
T Consensus 77 ~SLeD~E~k~n~aiErnalLE~El~ 101 (111)
T 2v66_B 77 VSLEDFEQRLNQAIERNAFLESELD 101 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777766666666666654
No 33
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=44.61 E-value=1.5e+02 Score=25.33 Aligned_cols=61 Identities=21% Similarity=0.296 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 037857 162 RKQQVDIAREHYAITASKIDAAKQELNRIRQDFDAALEAKHSALQQAAEAQRLAKVSSERVADLRKQL 229 (582)
Q Consensus 162 ~k~eLe~~r~qya~~~aeL~svk~EL~klr~e~~s~~eak~~A~~~a~ea~~~a~~~~~kveeLt~El 229 (582)
+..+|+.+|.+|...-.++..+..|+.+|+.+|..-...+..|. ..-..+..-+++||.-|
T Consensus 3 ~~~~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE-------~~~~~ie~ElEeLTasL 63 (97)
T 2eqb_B 3 LGSNYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAE-------EEADKLNKEVEDLTASL 63 (97)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 44668888999999999999999999999888876665554444 33445667778887665
No 34
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=43.91 E-value=1.6e+02 Score=25.58 Aligned_cols=37 Identities=19% Similarity=0.311 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 162 RKQQVDIAREHYAITASKIDAAKQELNRIRQDFDAAL 198 (582)
Q Consensus 162 ~k~eLe~~r~qya~~~aeL~svk~EL~klr~e~~s~~ 198 (582)
++.+++.+...-+....+++.++..+..++.-|..-+
T Consensus 25 LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~ 61 (119)
T 3ol1_A 25 LRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEM 61 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 4555555555666666666666666666666665543
No 35
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=42.19 E-value=2.2e+02 Score=26.60 Aligned_cols=36 Identities=11% Similarity=0.260 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 318 SMRAVTAELNKATKSLQEAADEECSLRNLVASLKLE 353 (582)
Q Consensus 318 sv~s~~~ELeeaK~~Lek~~eE~~~l~~~v~SLr~E 353 (582)
.+.++..||+..+..+.++..+-..|...+..|..|
T Consensus 98 ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe 133 (168)
T 3o0z_A 98 RITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKE 133 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666666666666666666555544
No 36
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=41.67 E-value=1.6e+02 Score=24.88 Aligned_cols=75 Identities=9% Similarity=0.013 Sum_probs=54.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 74 LDKETQLLLARKEIERTKKLLESSESTRARALGDLERAKRTMLELTTKLKAVKDSKESAIAAAEHVRKQAKQLEE 148 (582)
Q Consensus 74 ~~~e~qL~~aqeel~k~keql~~aE~~K~qal~ELe~aKr~veeL~~kLe~a~~~~~~A~e~sE~~k~r~~ElEq 148 (582)
..+..+.+.++.....+..++..++....++..|+..-.+-+.-|...|+.++..-..+...++.....+...|.
T Consensus 12 ~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ 86 (101)
T 3u1c_A 12 QMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAES 86 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567777888888888888888888888888888888888888888887776666666555555554444443
No 37
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=40.24 E-value=1.9e+02 Score=25.36 Aligned_cols=110 Identities=22% Similarity=0.266 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 037857 77 ETQLLLARKEIERTKKLLESSESTRARALGDLERAKRTMLELTTKLKAVKDSKESAIAAAEHVRKQAKQLEEAKSQKNIG 156 (582)
Q Consensus 77 e~qL~~aqeel~k~keql~~aE~~K~qal~ELe~aKr~veeL~~kLe~a~~~~~~A~e~sE~~k~r~~ElEq~~~~~~~~ 156 (582)
..++....+++.+++..+...+..+..........-....+|..+|..-...-.-+.+-++....+-.+|+..+.
T Consensus 12 e~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~----- 86 (129)
T 2fxo_A 12 EKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVK----- 86 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-----
Confidence 557778888999999999888888777666666666666666666654432222222223333333333443222
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 157 GIAVERKQQVDIAREHYAITASKIDAAKQELNRIRQDFD 195 (582)
Q Consensus 157 ~~e~a~k~eLe~~r~qya~~~aeL~svk~EL~klr~e~~ 195 (582)
.....|+..-.+.....+.-.-..+++..|+.+++
T Consensus 87 ----el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~le 121 (129)
T 2fxo_A 87 ----EMNKRLEDEEEMNAELTAKKRKLEDECSELKRDID 121 (129)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12333333334444444444444445555554443
No 38
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=38.71 E-value=1.5e+02 Score=23.85 Aligned_cols=60 Identities=12% Similarity=0.145 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 037857 396 EHKLELEKLSAETETAMKEEAVIKEEAEHLKQAAEAARMLAKEAEKNLQLALSEVEQAKA 455 (582)
Q Consensus 396 ~l~~~lqql~~Eae~ak~eae~~~~E~~k~k~E~e~~ka~~~t~E~rL~aa~kE~EAaka 455 (582)
.+...|+.|..+.+.+.-.++.+...+..+.....++...+.....+++....+++.+..
T Consensus 3 ~ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee 62 (81)
T 1ic2_A 3 AIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSE 62 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667777777777777777777777777777777777777777777777777776553
No 39
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=37.70 E-value=2.4e+02 Score=25.86 Aligned_cols=104 Identities=14% Similarity=0.142 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHhhhhhHhhhhhhhHHHHHHHHHHHHH
Q 037857 329 ATKSLQEAADEECSLRNLVASLKLELEDVQKECAELKEKEAEMEVIKGALMESIAKESAVECEDSLNEHKLELEKLSAET 408 (582)
Q Consensus 329 aK~~Lek~~eE~~~l~~~v~SLr~ELek~K~el~~Lke~E~~a~~~~~~eL~~~kse~a~~~~e~~~~l~~~lqql~~Ea 408 (582)
+...|+.+.+.+-..-..+..|..+|..+-..+.+|.-.+.++ +.+....-..|..|+...
T Consensus 26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seeka-------------------sqrEd~yEeqIk~L~~kL 86 (155)
T 2efr_A 26 LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKY-------------------SQKEDKYEEEIKVLSDKL 86 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHH-------------------HHHHHHHHHHHHHHHHHH
Confidence 5566677777777777777888888888877777776655422 111111223333333344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 037857 409 ETAMKEEAVIKEEAEHLKQAAEAARMLAKEAEKNLQLALSEVE 451 (582)
Q Consensus 409 e~ak~eae~~~~E~~k~k~E~e~~ka~~~t~E~rL~aa~kE~E 451 (582)
..|..-++.+...+.++-.+++...-.+.....+......+++
T Consensus 87 KEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd 129 (155)
T 2efr_A 87 KEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMK 129 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444445555555444444444444444444444
No 40
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=36.87 E-value=1.1e+02 Score=23.14 Aligned_cols=37 Identities=16% Similarity=0.279 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 161 ERKQQVDIAREHYAITASKIDAAKQELNRIRQDFDAA 197 (582)
Q Consensus 161 a~k~eLe~~r~qya~~~aeL~svk~EL~klr~e~~s~ 197 (582)
..+.++...-.+....+..|..+.++|.+|+.+++.+
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567777788889999999999999999999998764
No 41
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=36.53 E-value=2.2e+02 Score=25.04 Aligned_cols=41 Identities=20% Similarity=0.297 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 321 AVTAELNKATKSLQEAADEECSLRNLVASLKLELEDVQKEC 361 (582)
Q Consensus 321 s~~~ELeeaK~~Lek~~eE~~~l~~~v~SLr~ELek~K~el 361 (582)
-+..+|..+...|..+......-...|..|+.-|++.|+.-
T Consensus 29 lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~ 69 (121)
T 3mq7_A 29 LLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQG 69 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888888888888888888888888888877764
No 42
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=35.26 E-value=2.5e+02 Score=25.18 Aligned_cols=50 Identities=10% Similarity=0.181 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 319 MRAVTAELNKATKSLQEAADEECSLRNLVASLKLELEDVQKECAELKEKE 368 (582)
Q Consensus 319 v~s~~~ELeeaK~~Lek~~eE~~~l~~~v~SLr~ELek~K~el~~Lke~E 368 (582)
...+..++++....+...+.++..++...+.+..+++..+.++..|+.+.
T Consensus 77 ~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~ 126 (138)
T 3hnw_A 77 ADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNI 126 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666666666666666666666666665544
No 43
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=34.05 E-value=1.5e+02 Score=22.40 Aligned_cols=29 Identities=21% Similarity=0.185 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 037857 415 EAVIKEEAEHLKQAAEAARMLAKEAEKNL 443 (582)
Q Consensus 415 ae~~~~E~~k~k~E~e~~ka~~~t~E~rL 443 (582)
...+...+..++.++..++....-+-.||
T Consensus 20 VdqLssdV~al~~~v~~ak~eA~RAN~Rl 48 (52)
T 1jcd_A 20 ADQASNDANAARSDAQAAKDDAARANQRA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333344444444444444444444443
No 44
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=33.45 E-value=2e+02 Score=23.64 Aligned_cols=72 Identities=18% Similarity=0.246 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH-HHHHHHHHHhhHHHHHHHHHHHHHH
Q 037857 162 RKQQVDIAREHYAITASKIDAAKQELNRIRQDFDAALEAKHSALQ------QA-AEAQRLAKVSSERVADLRKQLSAMK 233 (582)
Q Consensus 162 ~k~eLe~~r~qya~~~aeL~svk~EL~klr~e~~s~~eak~~A~~------~a-~ea~~~a~~~~~kveeLt~El~~lk 233 (582)
++.+++.+...-+....+++.++..+..++.-|..=+.-+..+.+ +. +++.-.--.-+.+|+.|+-||.=+|
T Consensus 5 Lr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fLk 83 (86)
T 3swk_A 5 LRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLK 83 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444445555555544444444433333322221 11 1122222334556777777776555
No 45
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=30.98 E-value=3.2e+02 Score=25.12 Aligned_cols=48 Identities=19% Similarity=0.160 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 319 MRAVTAELNKATKSLQEAADEECSLRNLVASLKLELEDVQKECAELKE 366 (582)
Q Consensus 319 v~s~~~ELeeaK~~Lek~~eE~~~l~~~v~SLr~ELek~K~el~~Lke 366 (582)
+.....+|.+-...++.+.+|...|+.-+..+...+.+.+.+...|-+
T Consensus 84 i~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~ 131 (152)
T 3a7p_A 84 IRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVA 131 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677777777777777777777777777777777776655533
No 46
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=30.32 E-value=93 Score=26.11 Aligned_cols=39 Identities=15% Similarity=0.319 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 84 RKEIERTKKLLESSESTRARALGDLERAKRTMLELTTKL 122 (582)
Q Consensus 84 qeel~k~keql~~aE~~K~qal~ELe~aKr~veeL~~kL 122 (582)
..+|..++.++..+-..|+++..|++.....+++++.+|
T Consensus 55 e~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~KL 93 (93)
T 3s4r_A 55 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKL 93 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 445555666666666666666666666555555555543
No 47
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=29.43 E-value=5.5e+02 Score=27.40 Aligned_cols=9 Identities=22% Similarity=0.294 Sum_probs=4.7
Q ss_pred HHHhhhhcC
Q 037857 462 GELNVLSIK 470 (582)
Q Consensus 462 aeik~l~e~ 470 (582)
.+|+.|.+.
T Consensus 572 ~~~~~l~~~ 580 (597)
T 3oja_B 572 QKVKQLEAK 580 (597)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 355555544
No 48
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=28.94 E-value=2.4e+02 Score=23.05 Aligned_cols=25 Identities=16% Similarity=0.283 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHHHhhHHHHHHHH
Q 037857 219 SERVADLRKQLSAMKEGIKQIKLAA 243 (582)
Q Consensus 219 ~~kveeLt~El~~lke~l~~~~~a~ 243 (582)
-.+|++||.|-..+++++.+...+.
T Consensus 36 I~rvdELt~E~e~l~~El~s~~~~~ 60 (77)
T 2w83_C 36 IAKVDELTCEKDVLQGELEAVKQAK 60 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3579999999999999999986555
No 49
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=28.74 E-value=3.6e+02 Score=25.11 Aligned_cols=74 Identities=16% Similarity=0.247 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 037857 176 TASKIDAAKQELNRIRQDFDAALEAKHSALQQAAEAQRLAKVSSERVADLRKQLSAMKEGIKQIKLAAQEATDEQAR 252 (582)
Q Consensus 176 ~~aeL~svk~EL~klr~e~~s~~eak~~A~~~a~ea~~~a~~~~~kveeLt~El~~lke~l~~~~~a~~eA~ee~~~ 252 (582)
.++-|...+..|++=-..+-+.++.--....+..+.. .+-..+|..|..||.+++..+..+.....+..+.+..
T Consensus 56 ~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~---~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~ 129 (168)
T 3o0z_A 56 RNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMI---GDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNH 129 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444433333444444444444444332 2334488888888888888888876555555544433
No 50
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=26.76 E-value=3.2e+02 Score=26.11 Aligned_cols=32 Identities=25% Similarity=0.275 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 163 KQQVDIAREHYAITASKIDAAKQELNRIRQDF 194 (582)
Q Consensus 163 k~eLe~~r~qya~~~aeL~svk~EL~klr~e~ 194 (582)
+.+++.++.+|..+-+.|.+++.+|..++..+
T Consensus 97 ~~~~~~a~~~~~~a~a~l~~a~a~l~~a~~~l 128 (277)
T 2f1m_A 97 KQEYDQALADAQQANAAVTAAKAAVETARINL 128 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57788888888888888877777777666554
No 51
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=26.18 E-value=1.3e+02 Score=26.02 Aligned_cols=37 Identities=27% Similarity=0.423 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 317 DSMRAVTAELNKATKSLQEAADEECSLRNLVASLKLE 353 (582)
Q Consensus 317 ~sv~s~~~ELeeaK~~Lek~~eE~~~l~~~v~SLr~E 353 (582)
.|+.++..||...+..+.....+...+...+..|..|
T Consensus 4 ~s~~al~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkE 40 (106)
T 4e61_A 4 GSLVAIQAELTKSQETIGSLNEEIEQYKGTVSTLEIE 40 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566778888888888888888888888887776654
No 52
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=23.74 E-value=6.5e+02 Score=26.39 Aligned_cols=28 Identities=18% Similarity=0.217 Sum_probs=20.2
Q ss_pred HHhhHHHHHHHHHHHHHHhhHHHHHHHH
Q 037857 216 KVSSERVADLRKQLSAMKEGIKQIKLAA 243 (582)
Q Consensus 216 ~~~~~kveeLt~El~~lke~l~~~~~a~ 243 (582)
+....+|+.|+..|..+.......+.-.
T Consensus 63 r~~~~rIe~L~~~L~~~s~s~~~~~~y~ 90 (390)
T 1deq_A 63 QDFTSRINKLRDSLFNYQKNSKDSNTLT 90 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 4566788888888888877776665444
No 53
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=22.62 E-value=67 Score=21.28 Aligned_cols=21 Identities=48% Similarity=0.678 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 037857 180 IDAAKQELNRIRQDFDAALEA 200 (582)
Q Consensus 180 L~svk~EL~klr~e~~s~~ea 200 (582)
|.+.|.||..+++-++++++.
T Consensus 1 lQ~IkkELtQIK~kvDsLLe~ 21 (28)
T 1txp_A 1 IQAIKKELTQIKQKVDSLLEN 21 (28)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHH
Confidence 457889999999999998875
No 54
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=21.87 E-value=4e+02 Score=23.22 Aligned_cols=20 Identities=10% Similarity=0.408 Sum_probs=8.6
Q ss_pred HHHHHHHHHHhhHHHHHHHH
Q 037857 224 DLRKQLSAMKEGIKQIKLAA 243 (582)
Q Consensus 224 eLt~El~~lke~l~~~~~a~ 243 (582)
.+..+|..+++.+.......
T Consensus 17 ~~~eel~~lke~l~k~e~~r 36 (129)
T 2fxo_A 17 SMKEEFTRLKEALEKSEARR 36 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444443333
No 55
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=21.57 E-value=3e+02 Score=21.61 Aligned_cols=30 Identities=27% Similarity=0.470 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 329 ATKSLQEAADEECSLRNLVASLKLELEDVQ 358 (582)
Q Consensus 329 aK~~Lek~~eE~~~l~~~v~SLr~ELek~K 358 (582)
-...|..++.|+..++..+.+|..||+..|
T Consensus 47 ~~~~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 47 NNDALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334455666666667777777777776554
No 56
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC, protein binding; 2.40A {Homo sapiens}
Probab=21.40 E-value=6.2e+02 Score=25.28 Aligned_cols=99 Identities=18% Similarity=0.202 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHH
Q 037857 89 RTKKLLESSESTRARALGDLERAKRTMLELTTKLKAVKDSKESAIAAAEHVRKQAKQLEEAKSQKNIGGIAVERKQQVDI 168 (582)
Q Consensus 89 k~keql~~aE~~K~qal~ELe~aKr~veeL~~kLe~a~~~~~~A~e~sE~~k~r~~ElEq~~~~~~~~~~e~a~k~eLe~ 168 (582)
.+|++...++..=..+..-|++||..-.-+-..++++...-..+...- ..+...+.++...-. |.+++...+.
T Consensus 116 ~~Ke~w~r~eKk~~dae~~l~KAK~~Y~~r~ee~ekak~~~~~~e~~q-~~~~~~K~lek~r~~------EEea~~K~ee 188 (279)
T 3qwe_A 116 EFKEQWMKEQKRMNEAVQALRRAQLQYVQRSEDLRARSQGSPEDSAPQ-ASPGPSKQQERRRRS------REEAQAKAQE 188 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCC--------------HHHHHHHHH------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccc-ccccccchhhHHHhh------HHHHHHHHHH
Confidence 345555566666666777777777777777777777764432221100 012233444443322 4678899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 169 AREHYAITASKIDAAKQELNRIRQDF 194 (582)
Q Consensus 169 ~r~qya~~~aeL~svk~EL~klr~e~ 194 (582)
+...|..-+.+....+++|...+-..
T Consensus 189 Ad~~Y~~~V~~a~~~r~eL~~tk~~~ 214 (279)
T 3qwe_A 189 AEALYQACVREANARQQDLEIAKQRI 214 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 99999999999999999998776443
No 57
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=20.71 E-value=2.8e+02 Score=25.87 Aligned_cols=67 Identities=15% Similarity=0.341 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhHHHH
Q 037857 160 VERKQQVDIAREHYAITASKIDAAKQELNRIRQDFDAALEAKHSALQQAAEAQRLAKVSSERVADLRKQLSAMKEGIKQI 239 (582)
Q Consensus 160 ~a~k~eLe~~r~qya~~~aeL~svk~EL~klr~e~~s~~eak~~A~~~a~ea~~~a~~~~~kveeLt~El~~lke~l~~~ 239 (582)
++-++++..++.+|-..+.+| ++++...+.++..++.. .+-...+|..|..||..++..+...
T Consensus 70 ~EQq~ql~~I~~e~r~~~~~L---r~ql~akr~EL~aL~~a--------------~~~DeakI~aL~~Ei~~Lr~qL~~~ 132 (175)
T 3lay_A 70 TEQQATAQKIYDDYYTQTSAL---RQQLISKRYEYNALLTA--------------SSPDTAKINAVAKEMESLGQKLDEQ 132 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHTS--------------SSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhC--------------CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888888888777776 55666677776655532 2234456778888888888877776
Q ss_pred HHHH
Q 037857 240 KLAA 243 (582)
Q Consensus 240 ~~a~ 243 (582)
+...
T Consensus 133 R~k~ 136 (175)
T 3lay_A 133 RVKR 136 (175)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 58
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=20.70 E-value=3.7e+02 Score=22.37 Aligned_cols=37 Identities=16% Similarity=0.367 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 319 MRAVTAELNKATKSLQEAADEECSLRNLVASLKLELE 355 (582)
Q Consensus 319 v~s~~~ELeeaK~~Lek~~eE~~~l~~~v~SLr~ELe 355 (582)
+.....++......|..+......+...+..|+.++.
T Consensus 66 i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 66 LSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555555554444
No 59
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=20.59 E-value=4.9e+02 Score=23.80 Aligned_cols=32 Identities=13% Similarity=0.138 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 325 ELNKATKSLQEAADEECSLRNLVASLKLELED 356 (582)
Q Consensus 325 ELeeaK~~Lek~~eE~~~l~~~v~SLr~ELek 356 (582)
........|+.+-.++.++.....-|..|+.+
T Consensus 120 k~~~i~~eLd~tl~el~~~~~~~~~~~~~~~~ 151 (155)
T 2efr_A 120 KYKAISEEMKQLEDKVEELLSKNYHLENEVAR 151 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 33334444444444444444444444444433
Done!