Query 037857
Match_columns 582
No_of_seqs 155 out of 185
Neff 5.8
Searched_HMMs 13730
Date Mon Mar 25 08:03:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037857.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/037857hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1k1fa_ a.147.1.1 (A:) Bcr-Abl 18.1 54 0.004 24.0 3.7 41 315-355 24-64 (67)
2 d1vcsa1 a.47.2.1 (A:8-96) Vesi 17.7 1.8E+02 0.013 22.1 7.2 52 259-310 31-85 (89)
3 d1gqea_ e.38.1.1 (A:) Polypept 10.7 5.9E+02 0.043 23.7 12.8 22 218-239 46-67 (362)
4 d1ek9a_ f.5.1.1 (A:) Integral 9.2 5.8E+02 0.042 22.6 11.1 43 102-144 321-363 (428)
5 d1k4ta1 a.2.8.1 (A:641-712) Eu 8.5 2.9E+02 0.021 20.4 5.3 51 74-126 12-62 (72)
6 d1qvra2 c.37.1.20 (A:149-535) 7.2 8.1E+02 0.059 22.7 12.1 19 319-337 315-333 (387)
7 d1ez3a_ a.47.2.1 (A:) Syntaxin 6.5 5.2E+02 0.038 19.7 12.3 32 168-199 90-121 (124)
8 d2f9da1 d.58.7.1 (A:12-125) Pr 6.4 79 0.0057 24.3 1.2 25 28-52 10-34 (114)
9 d2cpxa1 d.58.7.1 (A:291-392) R 5.7 1.2E+02 0.0089 22.5 2.0 26 28-53 21-46 (102)
10 d1whwa_ d.58.7.1 (A:) Probable 5.1 94 0.0068 23.3 0.8 33 21-53 4-36 (99)
No 1
>d1k1fa_ a.147.1.1 (A:) Bcr-Abl oncoprotein oligomerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.08 E-value=54 Score=24.04 Aligned_cols=41 Identities=24% Similarity=0.264 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 315 EMDSMRAVTAELNKATKSLQEAADEECSLRNLVASLKLELE 355 (582)
Q Consensus 315 e~~sv~s~~~ELeeaK~~Lek~~eE~~~l~~~v~SLr~ELe 355 (582)
++.+|..+..||+.++.+|..+..+++.=+--|--|.+=|.
T Consensus 24 ~l~sV~diE~eLerCk~~irrLeqel~~ErF~~iYLQt~LA 64 (67)
T d1k1fa_ 24 ELRSVGDIEQELERAKASIRRLEQEVNQERFRMIYLQTLLA 64 (67)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34689999999999999999988888877776766665543
No 2
>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=17.66 E-value=1.8e+02 Score=22.08 Aligned_cols=52 Identities=17% Similarity=0.250 Sum_probs=24.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhhc---cHHhHHHHHHHHHHhHHHHHHHHHHHHH
Q 037857 259 TLMQSYKAAQEAAENKLNSLKKEY---DPQLTENLEIQLAQTTEEIKVLQKQMKQ 310 (582)
Q Consensus 259 ~~~~~~~~~l~e~e~~l~~Lk~el---~~el~~~LE~kL~et~~~ie~Lq~el~~ 310 (582)
.....++..++++..-|.++.-++ .|..-.-+-++|-.+-+++..|+.+++.
T Consensus 31 ~~l~~ie~~leEA~ell~qMelEvr~~p~s~R~~~~~klr~Yk~dl~~lk~elk~ 85 (89)
T d1vcsa1 31 QMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKR 85 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333445555555555555555443 2233334444444444444444444443
No 3
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]}
Probab=10.67 E-value=5.9e+02 Score=23.72 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=12.9
Q ss_pred hhHHHHHHHHHHHHHHhhHHHH
Q 037857 218 SSERVADLRKQLSAMKEGIKQI 239 (582)
Q Consensus 218 ~~~kveeLt~El~~lke~l~~~ 239 (582)
+-++...|++|+..++..++..
T Consensus 46 D~~kAqkl~KE~s~L~~iVe~~ 67 (362)
T d1gqea_ 46 EPERAQALGKERSSLEAVVDTL 67 (362)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666655543
No 4
>d1ek9a_ f.5.1.1 (A:) Integral outer membrane protein TolC, efflux pump component {Escherichia coli [TaxId: 562]}
Probab=9.22 E-value=5.8e+02 Score=22.62 Aligned_cols=43 Identities=9% Similarity=0.077 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 102 ARALGDLERAKRTMLELTTKLKAVKDSKESAIAAAEHVRKQAK 144 (582)
Q Consensus 102 ~qal~ELe~aKr~veeL~~kLe~a~~~~~~A~e~sE~~k~r~~ 144 (582)
.++..++..+...+..+...|+.+......+.+..+..+.+.+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~~~~~~~~y~ 363 (428)
T d1ek9a_ 321 RSVVQTVRSSFNNINASISSINAYKQAVVSAQSSLDAMEAGYS 363 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555566666666666666666665555556666666655543
No 5
>d1k4ta1 a.2.8.1 (A:641-712) Eukaryotic DNA topoisomerase I, dispensable insert domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.49 E-value=2.9e+02 Score=20.36 Aligned_cols=51 Identities=20% Similarity=0.307 Sum_probs=31.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 74 LDKETQLLLARKEIERTKKLLESSESTRARALGDLERAKRTMLELTTKLKAVK 126 (582)
Q Consensus 74 ~~~e~qL~~aqeel~k~keql~~aE~~K~qal~ELe~aKr~veeL~~kLe~a~ 126 (582)
-.+..||..++.++..++......-..+.+.. +++-++.++-|..+|-.-.
T Consensus 12 ~~Kk~qi~~a~~e~K~ak~d~k~~~~~k~k~~--~ekKkK~leRL~EQL~KLe 62 (72)
T d1k4ta1 12 DAKKEQLADARRDLKSAKADAKVMKDAKTKKV--VESKKKAVQRLEEQLMKLE 62 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 34456777777777777776665555555544 3456677777776665443
No 6
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=7.18 E-value=8.1e+02 Score=22.69 Aligned_cols=19 Identities=16% Similarity=0.379 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 037857 319 MRAVTAELNKATKSLQEAA 337 (582)
Q Consensus 319 v~s~~~ELeeaK~~Lek~~ 337 (582)
+..++.+|+.++..++.+.
T Consensus 315 i~~Lk~~Le~lr~~le~A~ 333 (387)
T d1qvra2 315 LREAQHRLDEVRREIELAE 333 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555555555554443
No 7
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=6.46 E-value=5.2e+02 Score=19.69 Aligned_cols=32 Identities=16% Similarity=0.229 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037857 168 IAREHYAITASKIDAAKQELNRIRQDFDAALE 199 (582)
Q Consensus 168 ~~r~qya~~~aeL~svk~EL~klr~e~~s~~e 199 (582)
.-+.||......|..+..+-+.++.+|-..+.
T Consensus 90 ir~~q~~~L~~kf~e~m~~yq~~q~~yr~~~k 121 (124)
T d1ez3a_ 90 IRKTQHSTLSRKFVEVMSEYNATQSDYRERCK 121 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34579999999999999999999999976554
No 8
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.38 E-value=79 Score=24.34 Aligned_cols=25 Identities=4% Similarity=0.119 Sum_probs=22.4
Q ss_pred CcccccccCCCcccHHHHHHhhchh
Q 037857 28 GEVGEIDTRAPFQSVKAAVSLFGEV 52 (582)
Q Consensus 28 ~~~~~iDt~apf~SVk~Avs~FG~~ 52 (582)
.++|-|+.....+.+.+..+.||.+
T Consensus 10 l~V~nLp~~~te~~l~~~F~~~G~v 34 (114)
T d2f9da1 10 LYIRNLPYKITAEEMYDIFGKYGPI 34 (114)
T ss_dssp EEEESCCTTCCHHHHHHHHHTTSCE
T ss_pred EEEECCCCCCCHHHHHHHHhhcCCe
Confidence 4889999999999999999999986
No 9
>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.71 E-value=1.2e+02 Score=22.54 Aligned_cols=26 Identities=15% Similarity=0.143 Sum_probs=22.7
Q ss_pred CcccccccCCCcccHHHHHHhhchhh
Q 037857 28 GEVGEIDTRAPFQSVKAAVSLFGEVK 53 (582)
Q Consensus 28 ~~~~~iDt~apf~SVk~Avs~FG~~~ 53 (582)
.++|-|.....-..+++-.+.||.+.
T Consensus 21 l~V~nLp~~~t~~~l~~~f~~~G~v~ 46 (102)
T d2cpxa1 21 LYLKNLSPRVTERDLVSLFARFQEKK 46 (102)
T ss_dssp EEEECCCTTCCHHHHHHHTHHHHHSS
T ss_pred EEEeCCCCCCCHHHHHHHHhhcccee
Confidence 38999999999999999999999863
No 10
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.06 E-value=94 Score=23.33 Aligned_cols=33 Identities=24% Similarity=0.250 Sum_probs=26.8
Q ss_pred cCCCCCCCcccccccCCCcccHHHHHHhhchhh
Q 037857 21 VSSGSPRGEVGEIDTRAPFQSVKAAVSLFGEVK 53 (582)
Q Consensus 21 ~~~~~~~~~~~~iDt~apf~SVk~Avs~FG~~~ 53 (582)
+.++|.+.++|-|+....-+.+++..+.||.+.
T Consensus 4 ~~~~~~~lfV~nL~~~~t~~~l~~~F~~~g~v~ 36 (99)
T d1whwa_ 4 GSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLS 36 (99)
T ss_dssp CCCSCEEEEEECCCTTCCHHHHHHHHHTTSCEE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCce
Confidence 344455679999999998899999999999863
Done!