BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>037858
MKGSLTTLCVGFLCGLVIYKIFKRIADDDVVSDAETSDHTVTVSVANRLEELYGGTAYVG
LRIPDPETRSLQNIDIVLVKNGEEVVISVKNFSGLVSINNDGSWVCMGEAVHPNPVSYS

High Scoring Gene Products

Symbol, full name Information P value
AT1G65020 protein from Arabidopsis thaliana 3.4e-29

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  037858
        (119 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2014983 - symbol:AT1G65020 "AT1G65020" species...   324  3.4e-29   1


>TAIR|locus:2014983 [details] [associations]
            symbol:AT1G65020 "AT1G65020" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0005783 "endoplasmic
            reticulum" evidence=IDA] [GO:0005886 "plasma membrane"
            evidence=IDA] GO:GO:0005783 EMBL:CP002684 GenomeReviews:CT485782_GR
            GO:GO:0005886 UniGene:At.35936 EMBL:BT015804 EMBL:BT020187
            IPI:IPI00527324 RefSeq:NP_176682.1 IntAct:Q5XF12 PRIDE:Q5XF12
            DNASU:842810 EnsemblPlants:AT1G65020.1 GeneID:842810
            KEGG:ath:AT1G65020 TAIR:At1g65020 HOGENOM:HOG000005892
            InParanoid:Q5XF12 OMA:YSPRDYR PhylomeDB:Q5XF12
            ProtClustDB:CLSN2682128 Genevestigator:Q5XF12 InterPro:IPR011528
            Pfam:PF08378 PROSITE:PS50965 Uniprot:Q5XF12
        Length = 319

 Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
 Identities = 63/103 (61%), Positives = 77/103 (74%)

Query:    10 VGFLCGLVIYKIFKRIADDDVVSDAETSDHTVTVSVANRLEELYGGTAYVGLRIPDPETR 69
             +  +CGLVIYK+ +R   DD  SD ETSD T   SVA+RLE+LYGG AYVGLRIPD +T 
Sbjct:     3 IEIICGLVIYKLVRRFFYDDEFSDVETSDSTALFSVAHRLEKLYGGKAYVGLRIPDADTA 62

Query:    70 SLQNIDIVLVKNGEEVVISVKNFSGLVSINNDGSWVCMGEAVH 112
             S Q+ID+VLV  G+ VVISVKN SG+V++ +DGSWVC G   H
Sbjct:    63 SRQDIDVVLVTKGDVVVISVKNLSGIVTVTSDGSWVCEGGKHH 105


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.136   0.397    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      119       119   0.00091  102 3  11 22  0.38    31
                                                     29  0.47    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  560 (60 KB)
  Total size of DFA:  119 KB (2078 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.67u 0.14s 12.81t   Elapsed:  00:00:00
  Total cpu time:  12.67u 0.14s 12.81t   Elapsed:  00:00:00
  Start:  Fri May 10 03:39:48 2013   End:  Fri May 10 03:39:48 2013

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