BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037858
(119 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A5D7Q3|SEP12_BOVIN Septin-12 OS=Bos taurus GN=SEPT12 PE=2 SV=1
Length = 361
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 60 GLRIPDPETRSLQNIDIVLVKNGEEVVISVKNFSGL-VSINNDGSW 104
GLR+P P+T L + V+ +NG ++ ++V + G INND W
Sbjct: 80 GLRVPMPQTLQLHYVTHVIEENGVKLKLTVTDTPGFGDQINNDKCW 125
>sp|Q8GU89|PDR4_ORYSJ Pleiotropic drug resistance protein 4 OS=Oryza sativa subsp.
japonica GN=PDR4 PE=2 SV=1
Length = 1450
Score = 33.5 bits (75), Expect = 0.42, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Query: 38 DHTVTVSVANRLEE---LYGGTAYVGLRIPDPETRSLQNIDIVLVKNGEEV 85
D + T + N L + + GGTA + L P PET +L + DI+L+ +G+ V
Sbjct: 361 DSSTTYQIVNSLRQTIHILGGTAVISLLQPAPETYNLFD-DIILLSDGQVV 410
>sp|Q0JLC5|PDR3_ORYSJ Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp.
japonica GN=PDR3 PE=2 SV=1
Length = 1457
Score = 33.1 bits (74), Expect = 0.47, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Query: 38 DHTVTVSVANRLEE---LYGGTAYVGLRIPDPETRSLQNIDIVLVKNGEEV 85
D + T + N L + + GGTA + L P PET +L + DI+L+ +G+ V
Sbjct: 367 DSSTTFQIVNSLRQTVHILGGTAVISLLQPAPETYNLFD-DIILLSDGQIV 416
>sp|A2WSH0|PDR3_ORYSI Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. indica
GN=PDR3 PE=2 SV=1
Length = 1457
Score = 33.1 bits (74), Expect = 0.47, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Query: 38 DHTVTVSVANRLEE---LYGGTAYVGLRIPDPETRSLQNIDIVLVKNGEEV 85
D + T + N L + + GGTA + L P PET +L + DI+L+ +G+ V
Sbjct: 367 DSSTTFQIVNSLRQTVHILGGTAVISLLQPAPETYNLFD-DIILLSDGQIV 416
>sp|A5N361|UVRC_CLOK5 UvrABC system protein C OS=Clostridium kluyveri (strain ATCC 8527 /
DSM 555 / NCIMB 10680) GN=uvrC PE=3 SV=1
Length = 622
Score = 33.1 bits (74), Expect = 0.56, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 45 VANRLEELYGGTAYVGLRIPDPETRSLQNI-DIVLVKNGEEVVISV 89
VAN ++E YGGTAY+ I PE +Q + D + +K +V I +
Sbjct: 297 VANFIKEFYGGTAYIAKTIYVPEIYDVQLLEDWLSIKKDSKVYIKI 342
>sp|Q8DPY7|Y932_STRR6 Uncharacterized RNA methyltransferase spr0932 OS=Streptococcus
pneumoniae (strain ATCC BAA-255 / R6) GN=spr0932 PE=3
SV=1
Length = 543
Score = 32.7 bits (73), Expect = 0.71, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 22 FKRIADDDVVSDAETSDHTVTVSVANRLEELYGGTAYVGLRIPDPETRSLQNIDIVLVKN 81
F + DDVV DA + T+ +SVA ++E+YG V L IP+ S +N + + N
Sbjct: 299 FAELKKDDVVIDAYSGIGTIGLSVAKHVKEVYG----VEL-IPEAVENSKKNAQLNNISN 353
Query: 82 GEEVVISVKN 91
V + +N
Sbjct: 354 AHYVCDTAEN 363
>sp|Q97R12|Y1029_STRPN Uncharacterized RNA methyltransferase SP_1029 OS=Streptococcus
pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)
GN=SP_1029 PE=3 SV=1
Length = 543
Score = 32.7 bits (73), Expect = 0.77, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 22 FKRIADDDVVSDAETSDHTVTVSVANRLEELYGGTAYVGLRIPDPETRSLQNIDIVLVKN 81
F + DDV+ DA + T+ +SVA ++E+YG V L IP+ S +N + + N
Sbjct: 299 FAELKKDDVIIDAYSGIGTIGLSVAKHVKEVYG----VEL-IPEAVENSQKNASLNKITN 353
Query: 82 GEEVVISVKN 91
V + +N
Sbjct: 354 AHYVCDTAEN 363
>sp|Q9M9E1|AB40G_ARATH ABC transporter G family member 40 OS=Arabidopsis thaliana
GN=ABCG40 PE=1 SV=1
Length = 1423
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 38 DHTVTVSVANRLE---ELYGGTAYVGLRIPDPETRSLQNIDIVLVKNGE 83
D + T + N L ++ GTA + L P PET +L + DI+L+ GE
Sbjct: 357 DSSTTYQIVNSLRNYVHIFNGTALISLLQPAPETFNLFD-DIILIAEGE 404
>sp|Q8GU88|PDR7_ORYSJ Putative pleiotropic drug resistance protein 7 OS=Oryza sativa
subsp. japonica GN=PDR7 PE=3 SV=1
Length = 1444
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 38 DHTVTVSVANRLEE---LYGGTAYVGLRIPDPETRSLQNIDIVLVKNGE 83
D + T + N L + + GGTA + L P PET L + DIVL+ G+
Sbjct: 356 DSSTTYQIVNSLRQSVHILGGTALIALLQPAPETYDLFD-DIVLLSEGQ 403
>sp|O24367|TUR2_SPIPO Pleiotropic drug resistance protein TUR2 OS=Spirodela polyrrhiza
GN=TUR2 PE=1 SV=1
Length = 1441
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 38 DHTVTVSVANRLEE---LYGGTAYVGLRIPDPETRSLQNIDIVLVKNGE 83
D + T + N L + + GGTA + L P PET L + DI+L+ +G+
Sbjct: 360 DSSTTFQIVNSLRQSVHILGGTALIALLQPAPETYDLFD-DILLLSDGQ 407
>sp|Q949G3|PDR1_NICPL Pleiotropic drug resistance protein 1 OS=Nicotiana plumbaginifolia
GN=PDR1 PE=1 SV=1
Length = 1436
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 4/48 (8%)
Query: 38 DHTVTVSVANRLEE---LYGGTAYVGLRIPDPETRSLQNIDIVLVKNG 82
D + T S+ N L++ + GTA + L P PET +L + DI+L+ +G
Sbjct: 368 DSSTTYSIVNSLKQSVRIMKGTALISLLQPAPETYNLFD-DIILLSDG 414
>sp|Q8GU92|PDR2_ORYSJ Probable pleiotropic drug resistance protein 2 OS=Oryza sativa
subsp. japonica GN=PDR2 PE=3 SV=1
Length = 1464
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 38 DHTVTVSVANRLEE---LYGGTAYVGLRIPDPETRSLQNIDIVLVKNGEEV 85
D + T + L + + GGTA + L P PET L + DI+L+ +G+ V
Sbjct: 376 DSSTTFQIVKSLRQAIHILGGTAVISLLQPAPETYDLFD-DIILLSDGQIV 425
>sp|A8GM31|SYC_RICAH Cysteine--tRNA ligase OS=Rickettsia akari (strain Hartford) GN=cysS
PE=3 SV=1
Length = 459
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 13/52 (25%), Positives = 28/52 (53%)
Query: 27 DDDVVSDAETSDHTVTVSVANRLEELYGGTAYVGLRIPDPETRSLQNIDIVL 78
DD ++ AE T+ +E + AY+G +P+ E ++ ++ID+++
Sbjct: 76 DDKIIDRAELLGITINELTDKVTQEFHTNMAYLGCMLPNIEPKATEHIDVMI 127
>sp|Q972J5|Y1136_SULTO Putative ABC transporter ATP-binding protein STK_11360
OS=Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 /
NBRC 100140 / 7) GN=STK_11360 PE=3 SV=1
Length = 471
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 26/41 (63%)
Query: 60 GLRIPDPETRSLQNIDIVLVKNGEEVVISVKNFSGLVSINN 100
GLR+ PE+ N+D + VK GE ++I+ K+ SG ++ N
Sbjct: 8 GLRVFYPESSYSLNVDSLEVKEGETILIAGKSGSGKSTLLN 48
>sp|B5E9Q0|DCTA_GEOBB C4-dicarboxylate transport protein OS=Geobacter bemidjiensis
(strain Bem / ATCC BAA-1014 / DSM 16622) GN=dctA PE=3
SV=1
Length = 439
Score = 30.4 bits (67), Expect = 3.8, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 32/69 (46%)
Query: 10 VGFLCGLVIYKIFKRIADDDVVSDAETSDHTVTVSVANRLEELYGGTAYVGLRIPDPETR 69
+G LCG I+K I ++ ++ +S + + +LE L + VGL IP +
Sbjct: 243 IGKLCGFNIFKFISYIKEELLIVLGTSSSESALPRLMAKLENLGCSKSVVGLVIPTGYSF 302
Query: 70 SLQNIDIVL 78
+L I L
Sbjct: 303 NLDGTSIYL 311
>sp|B1L273|UVRC_CLOBM UvrABC system protein C OS=Clostridium botulinum (strain Loch Maree
/ Type A3) GN=uvrC PE=3 SV=1
Length = 618
Score = 30.0 bits (66), Expect = 3.9, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 35 ETSDHTVTVSVANRLEELYGGTAYV--GLRIPDPETRSLQNIDIVLVKNGEEVV 86
+T D + ++N L+E YGGTAY+ + +P+ E +L + L K + +
Sbjct: 287 DTFDTNSSTLISNFLKEFYGGTAYIPKTIYVPNIEDEALLEQWLTLKKESKSTI 340
>sp|A7GIX6|UVRC_CLOBL UvrABC system protein C OS=Clostridium botulinum (strain Langeland
/ NCTC 10281 / Type F) GN=uvrC PE=3 SV=1
Length = 618
Score = 30.0 bits (66), Expect = 3.9, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 35 ETSDHTVTVSVANRLEELYGGTAYV--GLRIPDPETRSLQNIDIVLVKNGEEVV 86
+T D + ++N L+E YGGTAY+ + +P+ E +L + L K + +
Sbjct: 287 DTFDTNSSTLISNFLKEFYGGTAYIPKTIYVPNIEDEALLEQWLTLKKESKSTI 340
>sp|C1FMJ8|UVRC_CLOBJ UvrABC system protein C OS=Clostridium botulinum (strain Kyoto /
Type A2) GN=uvrC PE=3 SV=1
Length = 618
Score = 30.0 bits (66), Expect = 3.9, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 35 ETSDHTVTVSVANRLEELYGGTAYV--GLRIPDPETRSLQNIDIVLVKNGEEVV 86
+T D + ++N L+E YGGTAY+ + +P+ E +L + L K + +
Sbjct: 287 DTFDTNSSTLISNFLKEFYGGTAYIPKTIYVPNIEDEALLEQWLTLKKESKSTI 340
>sp|A5I7A5|UVRC_CLOBH UvrABC system protein C OS=Clostridium botulinum (strain Hall /
ATCC 3502 / NCTC 13319 / Type A) GN=uvrC PE=3 SV=1
Length = 618
Score = 30.0 bits (66), Expect = 3.9, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 35 ETSDHTVTVSVANRLEELYGGTAYV--GLRIPDPETRSLQNIDIVLVKNGEEVV 86
+T D + ++N L+E YGGTAY+ + +P+ E +L + L K + +
Sbjct: 287 DTFDTNSSTLISNFLKEFYGGTAYIPKTIYVPNIEDEALLEQWLTLKKESKSTI 340
>sp|A7FYX4|UVRC_CLOB1 UvrABC system protein C OS=Clostridium botulinum (strain ATCC 19397
/ Type A) GN=uvrC PE=3 SV=1
Length = 618
Score = 30.0 bits (66), Expect = 3.9, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 35 ETSDHTVTVSVANRLEELYGGTAYV--GLRIPDPETRSLQNIDIVLVKNGEEVV 86
+T D + ++N L+E YGGTAY+ + +P+ E +L + L K + +
Sbjct: 287 DTFDTNSSTLISNFLKEFYGGTAYIPKTIYVPNIEDEALLEQWLTLKKESKSTI 340
>sp|C6E2F4|DCTA_GEOSM C4-dicarboxylate transport protein OS=Geobacter sp. (strain M21)
GN=dctA PE=3 SV=1
Length = 439
Score = 30.0 bits (66), Expect = 4.0, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 32/69 (46%)
Query: 10 VGFLCGLVIYKIFKRIADDDVVSDAETSDHTVTVSVANRLEELYGGTAYVGLRIPDPETR 69
+G LCG I+K I ++ ++ +S + + +LE L + VGL IP +
Sbjct: 243 IGKLCGFNIFKFISYIKEELLIVLGTSSSESALPRMMAKLENLGCSKSVVGLVIPTGYSF 302
Query: 70 SLQNIDIVL 78
+L I L
Sbjct: 303 NLDGTSIYL 311
>sp|A8EXE9|SYC_RICCK Cysteine--tRNA ligase OS=Rickettsia canadensis (strain McKiel)
GN=cysS PE=3 SV=1
Length = 459
Score = 30.0 bits (66), Expect = 4.1, Method: Composition-based stats.
Identities = 13/52 (25%), Positives = 27/52 (51%)
Query: 27 DDDVVSDAETSDHTVTVSVANRLEELYGGTAYVGLRIPDPETRSLQNIDIVL 78
DD ++ AE T+ +E + Y+G ++P E ++ ++IDI++
Sbjct: 76 DDKIIDRAELLGSTINELTDKVTQEFHINMEYLGCKLPSIEPKATEHIDIMI 127
>sp|Q4UND9|SYC_RICFE Cysteine--tRNA ligase OS=Rickettsia felis (strain ATCC VR-1525 /
URRWXCal2) GN=cysS PE=3 SV=1
Length = 459
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 13/52 (25%), Positives = 27/52 (51%)
Query: 27 DDDVVSDAETSDHTVTVSVANRLEELYGGTAYVGLRIPDPETRSLQNIDIVL 78
DD ++ AE T+ +E + AY+G +P E ++ ++ID+++
Sbjct: 76 DDKIIDRAELLSITINELTDKVTQEFHTNMAYLGCLLPSIEPKATEHIDVMI 127
>sp|C3KV13|UVRC_CLOB6 UvrABC system protein C OS=Clostridium botulinum (strain 657 / Type
Ba4) GN=uvrC PE=3 SV=1
Length = 618
Score = 29.6 bits (65), Expect = 5.2, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 6/41 (14%)
Query: 35 ETSDHTVTVSVANRLEELYGGTAYVGLRIPDPETRSLQNID 75
+T D + ++N L+E YGGTAY+ P+T + NI+
Sbjct: 287 DTFDTNSSTLISNFLKEFYGGTAYI------PKTIYVPNIE 321
>sp|Q7PC80|PDR1_ORYSJ Probable pleiotropic drug resistance protein 1 OS=Oryza sativa
subsp. japonica GN=PDR1 PE=3 SV=1
Length = 1468
Score = 29.6 bits (65), Expect = 5.9, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 38 DHTVTVSVANRLEE---LYGGTAYVGLRIPDPETRSLQNIDIVLVKNGEEV 85
D + T + L + + GGTA + L P PET L + DI+L+ +G V
Sbjct: 380 DSSTTFQIVKSLRQTIHILGGTAVISLLQPAPETYDLFD-DIILLSDGHIV 429
>sp|B1IFW6|UVRC_CLOBK UvrABC system protein C OS=Clostridium botulinum (strain Okra /
Type B1) GN=uvrC PE=3 SV=1
Length = 618
Score = 29.6 bits (65), Expect = 6.0, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 35 ETSDHTVTVSVANRLEELYGGTAYV--GLRIPDPETRSLQNIDIVLVKNGEEVV 86
+T D + ++N L+E YGGTAY+ + +P E +L + L K + +
Sbjct: 287 DTFDTNSSTLISNFLKEFYGGTAYIPKTIYVPSIEDEALLEQWLTLKKESKSTI 340
>sp|B8D815|SYC_BUCAT Cysteine--tRNA ligase OS=Buchnera aphidicola subsp. Acyrthosiphon
pisum (strain Tuc7) GN=cysS PE=3 SV=1
Length = 464
Score = 29.6 bits (65), Expect = 6.5, Method: Composition-based stats.
Identities = 12/52 (23%), Positives = 26/52 (50%)
Query: 27 DDDVVSDAETSDHTVTVSVANRLEELYGGTAYVGLRIPDPETRSLQNIDIVL 78
DD ++S + + A+ ++E++ +G+ +PD E R ID ++
Sbjct: 71 DDKIISKSTKEKKKINTFTASMIKEMHKDFDLLGISVPDEEPRVTDYIDNII 122
>sp|P57558|SYC_BUCAI Cysteine--tRNA ligase OS=Buchnera aphidicola subsp. Acyrthosiphon
pisum (strain APS) GN=cysS PE=3 SV=1
Length = 464
Score = 29.6 bits (65), Expect = 6.5, Method: Composition-based stats.
Identities = 12/52 (23%), Positives = 26/52 (50%)
Query: 27 DDDVVSDAETSDHTVTVSVANRLEELYGGTAYVGLRIPDPETRSLQNIDIVL 78
DD ++S + + A+ ++E++ +G+ +PD E R ID ++
Sbjct: 71 DDKIISKSTKEKKKINTFTASMIKEMHKDFDLLGISVPDEEPRVTDYIDNII 122
>sp|B8D9R3|SYC_BUCA5 Cysteine--tRNA ligase OS=Buchnera aphidicola subsp. Acyrthosiphon
pisum (strain 5A) GN=cysS PE=3 SV=1
Length = 464
Score = 29.6 bits (65), Expect = 6.5, Method: Composition-based stats.
Identities = 12/52 (23%), Positives = 26/52 (50%)
Query: 27 DDDVVSDAETSDHTVTVSVANRLEELYGGTAYVGLRIPDPETRSLQNIDIVL 78
DD ++S + + A+ ++E++ +G+ +PD E R ID ++
Sbjct: 71 DDKIISKSTKEKKKINTFTASMIKEMHKDFDLLGISVPDEEPRVTDYIDNII 122
>sp|Q76CU2|PDR1_TOBAC Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1
PE=2 SV=1
Length = 1434
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Query: 38 DHTVTVSVANRLEE---LYGGTAYVGLRIPDPETRSLQNIDIVLVKNG 82
D + T S+ N L + + GTA + L P PET +L + DI+L+ +G
Sbjct: 364 DSSTTYSIVNSLRQSVQILKGTAVISLLQPAPETYNLFD-DIILLSDG 410
>sp|Q06116|YP117_YEAST Uncharacterized protein YPR117W OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=YPR117W PE=1 SV=1
Length = 2489
Score = 28.9 bits (63), Expect = 8.9, Method: Composition-based stats.
Identities = 17/73 (23%), Positives = 37/73 (50%), Gaps = 11/73 (15%)
Query: 18 IYKIFKRIADDDVVSDAETSDHTVTVSVANRLEELYGGTAYVGLRIPDPETRSLQNIDIV 77
+ K+ + + D+V ++ E D +V ++ R++ELY AY+ L P +
Sbjct: 2026 VEKLSRILFTDEVRNNLENLDVSVVTALQERIKELYYTRAYLKLHEPR-----------L 2074
Query: 78 LVKNGEEVVISVK 90
+K+G+E+ ++
Sbjct: 2075 FMKSGQELTFDIQ 2087
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.136 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,453,117
Number of Sequences: 539616
Number of extensions: 1775637
Number of successful extensions: 5118
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 5101
Number of HSP's gapped (non-prelim): 39
length of query: 119
length of database: 191,569,459
effective HSP length: 86
effective length of query: 33
effective length of database: 145,162,483
effective search space: 4790361939
effective search space used: 4790361939
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)