Query 037858
Match_columns 119
No_of_seqs 81 out of 83
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 08:04:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037858.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037858hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1y88_A Hypothetical protein AF 94.5 0.11 3.8E-06 39.9 6.8 47 44-93 23-69 (199)
2 1ob8_A Holliday-junction resol 93.3 0.094 3.2E-06 38.1 4.3 50 41-94 9-58 (135)
3 2wcw_A HJC; type II restrictio 92.1 0.12 4E-06 37.6 3.4 49 42-94 12-60 (139)
4 1hh1_A Holliday junction resol 91.0 0.29 1E-05 35.7 4.6 53 39-95 9-62 (143)
5 2eo0_A Hypothetical protein ST 90.4 0.28 9.5E-06 35.9 4.0 52 39-94 12-64 (147)
6 3fov_A UPF0102 protein RPA0323 90.0 0.97 3.3E-05 32.7 6.5 47 41-94 26-73 (134)
7 1gef_A Holliday junction resol 88.1 0.38 1.3E-05 34.2 3.2 43 42-93 9-51 (123)
8 1xmx_A Hypothetical protein VC 72.8 4 0.00014 33.3 4.4 50 42-91 255-311 (385)
9 2vld_A NUCS, UPF0286 protein p 56.6 15 0.00053 29.0 4.8 46 45-94 134-180 (251)
10 3hsa_A Pleckstrin homology dom 56.2 35 0.0012 24.4 6.2 43 44-95 19-63 (126)
11 1z65_A PRPLP, prion-like prote 54.4 10 0.00034 21.3 2.4 21 1-21 1-21 (30)
12 1m0d_A Endonuclease, endodeoxy 48.1 5.2 0.00018 29.4 0.7 51 38-91 5-57 (138)
13 1jb0_J Photosystem 1 reaction 36.2 25 0.00086 20.9 2.3 22 5-28 14-35 (41)
14 2c2a_A Sensor histidine kinase 36.0 23 0.0008 25.2 2.6 40 19-58 191-230 (258)
15 3efy_A CIF (cell cycle inhibit 34.0 52 0.0018 25.2 4.3 51 10-60 6-57 (195)
16 3dnx_A Uncharacterized protein 24.5 1.3E+02 0.0046 22.2 5.1 33 54-91 28-61 (153)
17 2pa8_L DNA-directed RNA polyme 24.3 1.2E+02 0.0042 19.9 4.5 48 32-83 15-62 (92)
18 3h1t_A Type I site-specific re 23.6 59 0.002 26.7 3.3 26 71-96 73-100 (590)
19 4fbj_A CIF, hypothetical prote 23.5 98 0.0033 24.7 4.4 73 11-84 73-148 (261)
20 3eir_A Putative ATP/GTP bindin 23.1 1.3E+02 0.0044 24.1 5.0 51 11-65 106-159 (281)
21 3elg_A Uncharacterized peripla 21.5 2E+02 0.0068 19.5 5.7 25 83-108 43-67 (128)
22 3sl2_A Sensor histidine kinase 20.7 61 0.0021 21.7 2.4 21 37-57 113-133 (177)
No 1
>1y88_A Hypothetical protein AF1548; APC5567, structural genomics, protein structure INIT PSI, midwest center for structural genomics center, MCSG; 1.85A {Archaeoglobus fulgidus} SCOP: a.60.4.3 c.52.1.30
Probab=94.48 E-value=0.11 Score=39.94 Aligned_cols=47 Identities=30% Similarity=0.323 Sum_probs=36.0
Q ss_pred hHHHHHhhccCceeEEEEEecCCCCCCceeeeEEEEeCCeEEEEEecCCc
Q 037858 44 SVANRLEELYGGTAYVGLRIPDPETRSLQNIDIVLVKNGEEVVISVKNFS 93 (119)
Q Consensus 44 ~v~~~Lekl~~~kiy~gLRIPd~~~~~~~EIDlVIVT~~~IlVIEvKNwS 93 (119)
-++.-|++ .|+.+..+.++.- ..+.+|||+|.-..+.+++||+|.|+
T Consensus 23 ~va~~L~~-~Gy~i~~~v~v~~--r~~dggIDIIA~k~~~~v~VEvK~r~ 69 (199)
T 1y88_A 23 MVARLLEE-HGFETKTNVIVQG--NCVEQEIDVVAERDGERYMIECKFHN 69 (199)
T ss_dssp HHHHHHHT-TTCEEEEEEEEEC--SSSEEEEEEEEEETTEEEEEEECCCS
T ss_pred HHHHHHHH-CCCEEEEeecccC--CCCCCcEEEEEEECCEEEEEEecccc
Confidence 46666766 4677776666643 23567999999999999999999998
No 2
>1ob8_A Holliday-junction resolvase; hydrolase, enzyme, homologous recombination, holliday junction resolving enzyme, nuclease, archaea; 1.8A {Sulfolobus solfataricus} SCOP: c.52.1.18 PDB: 1ob9_A
Probab=93.31 E-value=0.094 Score=38.13 Aligned_cols=50 Identities=22% Similarity=0.166 Sum_probs=32.9
Q ss_pred chhhHHHHHhhccCceeEEEEEecCCCCCCceeeeEEEEeCCeEEEEEecCCce
Q 037858 41 VTVSVANRLEELYGGTAYVGLRIPDPETRSLQNIDIVLVKNGEEVVISVKNFSG 94 (119)
Q Consensus 41 ~~~~v~~~Lekl~~~kiy~gLRIPd~~~~~~~EIDlVIVT~~~IlVIEvKNwSG 94 (119)
.+=.+++-|++. |..+. |-|....++..|||+|....+.++.||||--++
T Consensus 9 ~E~~A~~~L~~~-G~~il---r~~~~g~~~~gEiDIIA~~g~~lVfVEVKtR~~ 58 (135)
T 1ob8_A 9 AERELVSILRGE-GFNAV---RIPTSNSSPNPLPDIFATKGNTLLSIECKSTWE 58 (135)
T ss_dssp HHHHHHHHHHHT-TCEEE---ECCC-----CCSCSEEEEETTEEEEEEEEEESS
T ss_pred HHHHHHHHHHHC-CCEEE---EEcccCCCCCCCceEEEeECCEEEEEEEEEcCC
Confidence 344566777775 44554 555322335569999999999999999995554
No 3
>2wcw_A HJC; type II restriction endonuclease, hydrolase, DNA binding protein, holliday junction resolvase; 1.58A {Archaeoglobus fulgidus} PDB: 2wcz_A 2wiw_A 2wiz_A 2wj0_A
Probab=92.08 E-value=0.12 Score=37.61 Aligned_cols=49 Identities=16% Similarity=0.157 Sum_probs=34.8
Q ss_pred hhhHHHHHhhccCceeEEEEEecCCCCCCceeeeEEEEeCCeEEEEEecCCce
Q 037858 42 TVSVANRLEELYGGTAYVGLRIPDPETRSLQNIDIVLVKNGEEVVISVKNFSG 94 (119)
Q Consensus 42 ~~~v~~~Lekl~~~kiy~gLRIPd~~~~~~~EIDlVIVT~~~IlVIEvKNwSG 94 (119)
+=.+++.|++. +|.=+|.|........|||+|....+.++.||||--++
T Consensus 12 E~~a~~~L~~~----Gy~ilR~~~sg~~~~~eiDIIA~~~~~lv~IEVKtr~~ 60 (139)
T 2wcw_A 12 ERDLLVELWKA----GFAAIRVAGAGVSPFPCPDIVAGNGRTYLAIEVKMRKE 60 (139)
T ss_dssp HHHHHHHHHHT----TCEEEEBTTSSSCSSCCCSEEEECSSCEEEEEEEECSS
T ss_pred HHHHHHHHHhC----CcEEEEecCCCCCCCCCCCEEEeECCEEEEEEEEECCC
Confidence 34456666653 44445667665445669999999999999999996554
No 4
>1hh1_A Holliday junction resolving enzyme HJC; holliday junction resolvase, homologous recombination, nuclease domain, archaea; 2.15A {Sulfolobus solfataricus} SCOP: c.52.1.18
Probab=91.04 E-value=0.29 Score=35.72 Aligned_cols=53 Identities=26% Similarity=0.376 Sum_probs=33.2
Q ss_pred CcchhhHHHHHhhccCceeEEEEEecCCC-CCCceeeeEEEEeCCeEEEEEecCCcee
Q 037858 39 HTVTVSVANRLEELYGGTAYVGLRIPDPE-TRSLQNIDIVLVKNGEEVVISVKNFSGL 95 (119)
Q Consensus 39 ~~~~~~v~~~Lekl~~~kiy~gLRIPd~~-~~~~~EIDlVIVT~~~IlVIEvKNwSG~ 95 (119)
+..+=.+++-|++. |..+. |-|-.. .....|||+|....+.++.||||--++.
T Consensus 9 ~~~E~~a~~~L~~~-G~~il---r~~~sg~~~~~gEiDIIA~~~~~lvfVEVK~R~~~ 62 (143)
T 1hh1_A 9 SAVERNIVSRLRDK-GFAVV---RAPASGSKRKDPIPDIIALKNGVIILIEMKSRKDI 62 (143)
T ss_dssp CHHHHHHHHHHHHT-TCEEE---ECCC-------CCCSEEEEETTEEEEEEECCEECT
T ss_pred HHHHHHHHHHHHHC-CCEEE---EEcCcCCcCCCCCceEEEEECCEEEEEEEEECCCC
Confidence 34445566677764 44444 444322 2345699999999999999999966543
No 5
>2eo0_A Hypothetical protein ST1444; holliday junction resolvase, DNA binding protein, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii}
Probab=90.42 E-value=0.28 Score=35.92 Aligned_cols=52 Identities=27% Similarity=0.363 Sum_probs=33.7
Q ss_pred CcchhhHHHHHhhccCceeEEEEEecCCC-CCCceeeeEEEEeCCeEEEEEecCCce
Q 037858 39 HTVTVSVANRLEELYGGTAYVGLRIPDPE-TRSLQNIDIVLVKNGEEVVISVKNFSG 94 (119)
Q Consensus 39 ~~~~~~v~~~Lekl~~~kiy~gLRIPd~~-~~~~~EIDlVIVT~~~IlVIEvKNwSG 94 (119)
+..+=.+++-|++. |..+. |-|... .....|||+|....+.++.||||--++
T Consensus 12 ~~~E~~a~~~L~~~-G~~il---r~~~sgg~~~~gEiDIIA~~~~~lvfVEVK~R~~ 64 (147)
T 2eo0_A 12 SSVERYIVSRLRDK-GFAVI---RAPASGSKRKDHVPDIIALKSGVIILIEVKSRKN 64 (147)
T ss_dssp CHHHHHHHHHHHHT-TCEEE---CC-----CCGGGSCSEEEEETTEEEEEEEEECCC
T ss_pred HHHHHHHHHHHHHC-CCEEE---EEcccCCcCCCCCceEEEEeCCEEEEEEEEECCC
Confidence 44555667777775 44444 444322 234559999999999999999995544
No 6
>3fov_A UPF0102 protein RPA0323; structural genomics, APC7380, PSI-2, protein structure initi midwest center for structural genomics, MCSG; 1.88A {Rhodopseudomonas palustris}
Probab=89.96 E-value=0.97 Score=32.70 Aligned_cols=47 Identities=21% Similarity=0.213 Sum_probs=33.3
Q ss_pred chhhHHHHHhhccCcee-EEEEEecCCCCCCceeeeEEEEeCCeEEEEEecCCce
Q 037858 41 VTVSVANRLEELYGGTA-YVGLRIPDPETRSLQNIDIVLVKNGEEVVISVKNFSG 94 (119)
Q Consensus 41 ~~~~v~~~Lekl~~~ki-y~gLRIPd~~~~~~~EIDlVIVT~~~IlVIEvKNwSG 94 (119)
++--++.-|++ .|+.+ =.|.|-| .+|||+|....+.+..||||--++
T Consensus 26 gE~~A~~~L~~-~Gy~Il~rN~r~~------~GEIDiIa~~~~~LVFVEVKtR~~ 73 (134)
T 3fov_A 26 AEASAADYLER-QGYRILARRFKTR------CGEIDLVAQRDALVAFVEVKARGN 73 (134)
T ss_dssp HHHHHHHHHHH-TTCEEEEEEEEET------TEEEEEEEEETTEEEEEEEEEC--
T ss_pred HHHHHHHHHHH-CCCEEEeccccCC------CCcEEEEEEECCEEEEEEEEEccC
Confidence 34445555554 46655 5678874 369999999999999999997766
No 7
>1gef_A Holliday junction resolvase; HJC, hydrolase; 2.00A {Pyrococcus furiosus} SCOP: c.52.1.18 PDB: 1ipi_A
Probab=88.12 E-value=0.38 Score=34.15 Aligned_cols=43 Identities=19% Similarity=0.147 Sum_probs=30.6
Q ss_pred hhhHHHHHhhccCceeEEEEEecCCCCCCceeeeEEEEeCCeEEEEEecCCc
Q 037858 42 TVSVANRLEELYGGTAYVGLRIPDPETRSLQNIDIVLVKNGEEVVISVKNFS 93 (119)
Q Consensus 42 ~~~v~~~Lekl~~~kiy~gLRIPd~~~~~~~EIDlVIVT~~~IlVIEvKNwS 93 (119)
+-.+++-|++. |+.+..|.|- +|||+|..-.+.++.||||--+
T Consensus 9 E~~A~~~L~~~-Gy~ilrn~r~--------~EIDIIA~~~~~lvfVEVK~R~ 51 (123)
T 1gef_A 9 ERELIKLLEKH-GFAVVRSAGS--------KKVDLVAGNGKKYLCIEVKVTK 51 (123)
T ss_dssp HHHHHHHHHHT-TCEEEEBGGG--------SSCSEEEECSSCEEEEEEEEES
T ss_pred HHHHHHHHHHC-CCEEEEecCC--------CCceEEEEeCCEEEEEEEEeCC
Confidence 44566667764 6666644332 2999999999999999999444
No 8
>1xmx_A Hypothetical protein VC1899; alpha-beta, MCSG, protein structure initiative, structural G PSI, midwest center for structural genomics; 2.10A {Vibrio cholerae} SCOP: c.52.1.26
Probab=72.76 E-value=4 Score=33.28 Aligned_cols=50 Identities=12% Similarity=0.165 Sum_probs=32.9
Q ss_pred hhhHHHHHhhcc---C--ceeEEEEEecCCCC--CCceeeeEEEEeCCeEEEEEecC
Q 037858 42 TVSVANRLEELY---G--GTAYVGLRIPDPET--RSLQNIDIVLVKNGEEVVISVKN 91 (119)
Q Consensus 42 ~~~v~~~Lekl~---~--~kiy~gLRIPd~~~--~~~~EIDlVIVT~~~IlVIEvKN 91 (119)
+.-|..++++.. + ..+-.|+.|..+.+ .-..|+|++++..+.+++||-|-
T Consensus 255 E~~v~~~l~~~~~~~~~~~d~~~~v~i~~~~~~~~~~nElDV~~~~~n~l~~iECKt 311 (385)
T 1xmx_A 255 ETLVHSTVKQIQDDMPTIQDRSLNVQVYRQLGEREVRNELDVATVVNNKLHIIECKT 311 (385)
T ss_dssp HHHHHHHHHHHHTTCTTEEEEEEEEEEEEEETTEEEEEEEEEEEEETTEEEEEEEES
T ss_pred HHHHHHHHHHHhhccCcchhheeeeEEEecCCCCCCCceeEEEEEECCEEEEEEeCC
Confidence 334555555441 1 24566777754322 22579999999999999999993
No 9
>2vld_A NUCS, UPF0286 protein pyrab01260; endonuclease, hydrolase; 2.60A {Pyrococcus abyssi}
Probab=56.58 E-value=15 Score=28.97 Aligned_cols=46 Identities=15% Similarity=0.107 Sum_probs=30.3
Q ss_pred HHHHHhhccCceeEEEEEecCCCCCCceeeeEEEEeCC-eEEEEEecCCce
Q 037858 45 VANRLEELYGGTAYVGLRIPDPETRSLQNIDIVLVKNG-EEVVISVKNFSG 94 (119)
Q Consensus 45 v~~~Lekl~~~kiy~gLRIPd~~~~~~~EIDlVIVT~~-~IlVIEvKNwSG 94 (119)
+++.++.+-.+..|.+-..|-+ .+.||++....+ ..++||+|...+
T Consensus 134 L~~n~~~Lg~G~~~v~rEy~t~----~G~IDlL~~D~~g~~VvIElKr~~~ 180 (251)
T 2vld_A 134 IFENPRVIEEGFKPIYREKPIR----HGIVDVMGVDKDGNIVVLELKRRKA 180 (251)
T ss_dssp HHHCGGGTCTTCEEEEEEEEET----TEEEEEEEECTTSCEEEEEECSSCB
T ss_pred HHhCHHHhCCCcEEEEEEeccC----CCceeEEEECCCCCEEEEEEeeccC
Confidence 4444555645555655444432 249999999954 788999998754
No 10
>3hsa_A Pleckstrin homology domain; YP_926556.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE MLY; 1.99A {Shewanella amazonensis SB2B} SCOP: b.55.1.13 PDB: 3dcx_A*
Probab=56.24 E-value=35 Score=24.37 Aligned_cols=43 Identities=12% Similarity=0.203 Sum_probs=33.6
Q ss_pred hHHHHHhh--ccCceeEEEEEecCCCCCCceeeeEEEEeCCeEEEEEecCCcee
Q 037858 44 SVANRLEE--LYGGTAYVGLRIPDPETRSLQNIDIVLVKNGEEVVISVKNFSGL 95 (119)
Q Consensus 44 ~v~~~Lek--l~~~kiy~gLRIPd~~~~~~~EIDlVIVT~~~IlVIEvKNwSG~ 95 (119)
.+.++++. +.|..+++.++. .| |.+++|..++++++....+|+
T Consensus 19 ~~~~~~~~~L~~gE~I~~ayk~------iR---D~~iFTnkRLI~vD~QG~TGk 63 (126)
T 3hsa_A 19 XLAAELSPILGDNEELQLAYXM------VR---DLFVFTSXRLILIDXQGVTGX 63 (126)
T ss_dssp HHHHHHGGGSCTTCCEEEEEEC------SS---EEEEEESSEEEEEEEESTTSC
T ss_pred HHHHHHHHhcCCCCEEEEEehh------cC---ceEEEccchheEEecCcCccc
Confidence 35555665 456788888887 22 999999999999999888886
No 11
>1z65_A PRPLP, prion-like protein doppel, doppelganger; transmembrane helix, DHPC, mouse doppel, unknown function; NMR {Synthetic}
Probab=54.36 E-value=10 Score=21.30 Aligned_cols=21 Identities=38% Similarity=0.553 Sum_probs=17.1
Q ss_pred CCCcchhhHHHHHHHHHHHhh
Q 037858 1 MKGSLTTLCVGFLCGLVIYKI 21 (119)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~ 21 (119)
|+--|.+-|+.|+|-|+.-.|
T Consensus 1 MrkhLG~~wlai~c~LLfs~L 21 (30)
T 1z65_A 1 MKNRLGTWWVAILCMLLASHL 21 (30)
T ss_dssp CCSSCSSHHHHHHHHHHHHHT
T ss_pred CcchhhhhHHHHHHHHHHhhH
Confidence 677788999999999986543
No 12
>1m0d_A Endonuclease, endodeoxyribonuclease I; holliday junction resolvase, homodimer, domain swapped, composite active site, hydrolase; 1.90A {Enterobacteria phage T7} SCOP: c.52.1.17 PDB: 1m0i_A 2pfj_A 1fzr_A 3cae_A
Probab=48.08 E-value=5.2 Score=29.43 Aligned_cols=51 Identities=16% Similarity=0.147 Sum_probs=34.9
Q ss_pred CCcchhhHHHHHhhccCceeEEEEEecCC--CCCCceeeeEEEEeCCeEEEEEecC
Q 037858 38 DHTVTVSVANRLEELYGGTAYVGLRIPDP--ETRSLQNIDIVLVKNGEEVVISVKN 91 (119)
Q Consensus 38 ~~~~~~~v~~~Lekl~~~kiy~gLRIPd~--~~~~~~EIDlVIVT~~~IlVIEvKN 91 (119)
+|+.+-.+|.+|+++.-+.-|.+.++|=. .....-..|.++ ++++ ++|+|-
T Consensus 5 RSglEek~A~~Le~~GV~y~yE~~k~~Y~ip~~~~~YtPDF~L--pngi-~iEvKG 57 (138)
T 1m0d_A 5 RSGLEDKVSKQLESKGIKFEYEEWKVPYVIPASNHTYTPDFLL--PNGI-FVETKG 57 (138)
T ss_dssp -CHHHHHHHHHHHHTTCCCEESCEEEEEEECCEEEEECCSEEC--TTSC-EEEEES
T ss_pred cchHHHHHHHHHHhCCCCEEeecceEeeeecCCCceeCCCEEc--cCCC-EEEecc
Confidence 57788899999999866666766544322 122344788888 5676 699993
No 13
>1jb0_J Photosystem 1 reaction centre subunit IX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.18.1 PDB: 3pcq_J*
Probab=36.20 E-value=25 Score=20.89 Aligned_cols=22 Identities=27% Similarity=0.538 Sum_probs=17.1
Q ss_pred chhhHHHHHHHHHHHhhhhhhccC
Q 037858 5 LTTLCVGFLCGLVIYKIFKRIADD 28 (119)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~d 28 (119)
+.+.|.-+..|++|- +.|||-|
T Consensus 14 la~~w~~~tAg~lIE--iNRffPD 35 (41)
T 1jb0_J 14 LAAIWMTITAGILIE--FNRFYPD 35 (41)
T ss_dssp HHHHHHHHHHHHHHH--HHHHSCC
T ss_pred HHHHHHHHHHHHHHH--HHHhCcc
Confidence 568999999999874 5677755
No 14
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=36.04 E-value=23 Score=25.23 Aligned_cols=40 Identities=20% Similarity=0.346 Sum_probs=24.0
Q ss_pred HhhhhhhccCCceecceecCCcchhhHHHHHhhccCceeE
Q 037858 19 YKIFKRIADDDVVSDAETSDHTVTVSVANRLEELYGGTAY 58 (119)
Q Consensus 19 ~~~~~~~~~dd~~~~~~~s~~~~~~~v~~~Lekl~~~kiy 58 (119)
-++|..||.-+....-...+++.++++++++=+..|+.+-
T Consensus 191 ~~if~~f~~~~~~~~~~~~G~GLGL~i~~~iv~~~gG~i~ 230 (258)
T 2c2a_A 191 DRIFEQFYRVDSSLTYEVPGTGLGLAITKEIVELHGGRIW 230 (258)
T ss_dssp TGGGSTTCCCC---------CCCTHHHHHHHHHHTTCEEE
T ss_pred HhhccccccCCCCCCCCCCCcchHHHHHHHHHHHcCCEEE
Confidence 3567777764443333445788999999999888888763
No 15
>3efy_A CIF (cell cycle inhibiting factor); bacteria, virulence factor, type III secretion, E. coli, plasmid; 1.70A {Escherichia coli}
Probab=34.00 E-value=52 Score=25.22 Aligned_cols=51 Identities=24% Similarity=0.224 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhhhhhhccCCcee-cceecCCcchhhHHHHHhhccCceeEEE
Q 037858 10 VGFLCGLVIYKIFKRIADDDVVS-DAETSDHTVTVSVANRLEELYGGTAYVG 60 (119)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~dd~~~-~~~~s~~~~~~~v~~~Lekl~~~kiy~g 60 (119)
+|-.||+-|--+|+-|-.-|-.+ -+|-..+=.+-+.|.+|+.|...+=|.-
T Consensus 6 ~ePvCG~sAnnIfKLmte~d~~~~~~e~~Qtl~~~~faE~l~~l~s~knyV~ 57 (195)
T 3efy_A 6 VEPSCGVTANAIMKLFLDKDGFSYCFENEQTLSLEQLQERLSCMPECKSFVL 57 (195)
T ss_dssp --CCHHHHHHHHHHHHHCBTTBCCCGGGSCCBCHHHHHHHHHTCCTTSEEEE
T ss_pred ccccccccHHHHHHHHhcCCcccchhhhhccccHHHHHHHHhhhhcccCEEE
Confidence 46689999999999887756533 3444445556678999999998877753
No 16
>3dnx_A Uncharacterized protein SPO1766; structural genomics, APC88088, protein of unknown function, protein structure initiative; HET: MSE; 1.94A {Silicibacter pomeroyi}
Probab=24.47 E-value=1.3e+02 Score=22.20 Aligned_cols=33 Identities=15% Similarity=0.079 Sum_probs=23.1
Q ss_pred CceeEEEEEecCCCCCCceeeeEEEEeCCe-EEEEEecC
Q 037858 54 GGTAYVGLRIPDPETRSLQNIDIVLVKNGE-EVVISVKN 91 (119)
Q Consensus 54 ~~kiy~gLRIPd~~~~~~~EIDlVIVT~~~-IlVIEvKN 91 (119)
|+-+..-+.+|+ + +..|++-+.+++ |.+||+|-
T Consensus 28 g~~~l~E~~l~~----G-rRaDv~al~~kg~i~ivEiKs 61 (153)
T 3dnx_A 28 GFVSVEEFVPAR----G-LRVDVMGLGPKGEIWVIECKS 61 (153)
T ss_dssp TCEEEEEECSST----T-CCEEEEEECTTCCEEEEEECS
T ss_pred CCcEEEEEccCC----C-ceeeEEEECCCCcEEEEEEEc
Confidence 444455565653 2 489999998765 69999994
No 17
>2pa8_L DNA-directed RNA polymerase subunit L; ferredoxin-like Fe-S binding motif, platform for RNA polymer assembly, transferase; 1.76A {Sulfolobus solfataricus} PDB: 2pmz_L 3hkz_L 2waq_L 2wb1_L 2y0s_L
Probab=24.27 E-value=1.2e+02 Score=19.88 Aligned_cols=48 Identities=23% Similarity=0.464 Sum_probs=32.1
Q ss_pred ecceecCCcchhhHHHHHhhccCceeEEEEEecCCCCCCceeeeEEEEeCCe
Q 037858 32 SDAETSDHTVTVSVANRLEELYGGTAYVGLRIPDPETRSLQNIDIVLVKNGE 83 (119)
Q Consensus 32 ~~~~~s~~~~~~~v~~~Lekl~~~kiy~gLRIPd~~~~~~~EIDlVIVT~~~ 83 (119)
..++.-|++.+=.+...|-+- +.=.|+|.++|+|-. .++-+-|-|.++
T Consensus 15 f~i~~EDHTLgN~Lr~~L~~~-p~V~fagY~vpHPl~---~~~~lrIqT~~~ 62 (92)
T 2pa8_L 15 LEIEGEDHTLGNLIAGTLRRI-SGVSFASYYQPHPLS---DKIIVKILTDGS 62 (92)
T ss_dssp EEEETCCHHHHHHHHHHHHTS-TTEEEEEEECSSTTS---CCEEEEEEECSS
T ss_pred EEEecCchhHHHHHHHHHhcC-CCeeEEEeecCCCCC---CceEEEEEECCC
Confidence 345555666666677777663 446699999999843 367777766543
No 18
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=23.60 E-value=59 Score=26.65 Aligned_cols=26 Identities=19% Similarity=0.069 Sum_probs=20.3
Q ss_pred ceeeeEEEEeC--CeEEEEEecCCceeE
Q 037858 71 LQNIDIVLVKN--GEEVVISVKNFSGLV 96 (119)
Q Consensus 71 ~~EIDlVIVT~--~~IlVIEvKNwSG~I 96 (119)
.+-+|+|+..+ .-+.|||.|+|+-.+
T Consensus 73 ~~r~Dyvl~~~~g~p~~viEaK~~~~~~ 100 (590)
T 3h1t_A 73 QKRADYLLKYTRDFPIAVVEAKPENSPV 100 (590)
T ss_dssp CCEEEEEEEEETTEEEEEEEECCTTSCG
T ss_pred CCcccEEEEecCCcEEEEEEcCCCCCCH
Confidence 35799999887 458899999986543
No 19
>4fbj_A CIF, hypothetical protein; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Photorhabdus luminescens subsp} PDB: 3gqj_A
Probab=23.48 E-value=98 Score=24.69 Aligned_cols=73 Identities=18% Similarity=0.214 Sum_probs=49.3
Q ss_pred HHHHHHHHHhhhhhhccCCc---eecceecCCcchhhHHHHHhhccCceeEEEEEecCCCCCCceeeeEEEEeCCeE
Q 037858 11 GFLCGLVIYKIFKRIADDDV---VSDAETSDHTVTVSVANRLEELYGGTAYVGLRIPDPETRSLQNIDIVLVKNGEE 84 (119)
Q Consensus 11 ~~~~~~~~~~~~~~~~~dd~---~~~~~~s~~~~~~~v~~~Lekl~~~kiy~gLRIPd~~~~~~~EIDlVIVT~~~I 84 (119)
|=.||+-|--+|+-|-.-|- +.+.+.+.+=.+-+.|.+|+.|...+=|.- |+-|..-+...=||+=-.|++++
T Consensus 73 ePvcG~sAnnIfKLmte~d~~~dp~e~~Qt~~l~~~~faE~l~~L~s~kNyV~-~VNDgrLGH~flIDiPa~~~~r~ 148 (261)
T 4fbj_A 73 EPVSGLSAQNIFKLMTEGEHAVDPVEMAQTGKIDGNEFAESVDQLSSAKNYVA-LVNDRRLGHMFLIDIPSNDQETV 148 (261)
T ss_dssp CBCHHHHHHHHHHHHHCSSSCCCHHHHHHHSCBCHHHHHHHGGGSCTTCEEEE-EEEETTTTEEEEEEECCCSSCCE
T ss_pred CccccccHHHHHHHHhcCCcccchhhhhhhcccchHHHHHHHhhhhcccCEEE-EEcCCCcceeEEEecCCCCCCcc
Confidence 34699999999998887554 556777777777899999999998877763 44444333333444444444433
No 20
>3eir_A Putative ATP/GTP binding protein; papain-like fold, unknown function; 2.10A {Burkholderia pseudomallei} PDB: 3eit_A 3gqm_A 4hcp_A 4hcn_A
Probab=23.11 E-value=1.3e+02 Score=24.10 Aligned_cols=51 Identities=29% Similarity=0.387 Sum_probs=36.5
Q ss_pred HHHHHHHHHhhhhhhccCCcee---cceecCCcchhhHHHHHhhccCceeEEEEEecC
Q 037858 11 GFLCGLVIYKIFKRIADDDVVS---DAETSDHTVTVSVANRLEELYGGTAYVGLRIPD 65 (119)
Q Consensus 11 ~~~~~~~~~~~~~~~~~dd~~~---~~~~s~~~~~~~v~~~Lekl~~~kiy~gLRIPd 65 (119)
|=.||+-|--+||-|-.-|-.+ .+| +=.+-+.|.+|+.|...+=|.- |+-|
T Consensus 106 EPVCG~SAnnIfKLmte~d~~~dp~~~e---~l~~~qfaE~l~~L~s~KNyV~-~VND 159 (281)
T 3eir_A 106 TPVCGLSANNIFKLMTEKDVPIDPTSIE---YLENTSFAEHVNTLDSHKNYVV-IVND 159 (281)
T ss_dssp CCCHHHHHHHHHHHHHCSSSCCCTTTSC---CBCSSCHHHHHTTSCTTSEEEE-EEEE
T ss_pred CCcccccHHHHHHHHhcCCcccCceehh---hcchHHHHHHHhhhhcccCEEE-EEcC
Confidence 3469999999999888766544 455 4445567899999988877753 3433
No 21
>3elg_A Uncharacterized periplasmic protein; BLIP-like fold, structural genomics, joint center for struct genomics, JCSG; HET: CIT; 1.64A {Bacteroides vulgatus atcc 8482} SCOP: d.98.2.1
Probab=21.50 E-value=2e+02 Score=19.55 Aligned_cols=25 Identities=12% Similarity=0.318 Sum_probs=19.4
Q ss_pred eEEEEEecCCceeEEEcCCCCeEEec
Q 037858 83 EEVVISVKNFSGLVSINNDGSWVCMG 108 (119)
Q Consensus 83 ~IlVIEvKNwSG~I~~~~dg~W~q~~ 108 (119)
+.|-||++|=. .|.++.+|+|+...
T Consensus 43 ~~YeV~l~ng~-el~Fd~~G~w~~id 67 (128)
T 3elg_A 43 TSYDVKLADGI-ELEFNSKGEWLEID 67 (128)
T ss_dssp EEEEEEETTSC-EEEECTTSCEEEEE
T ss_pred ceEEEEECCCc-EEEEeCCCCEEEec
Confidence 67888888632 49999999999964
No 22
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=20.66 E-value=61 Score=21.67 Aligned_cols=21 Identities=14% Similarity=0.335 Sum_probs=15.6
Q ss_pred cCCcchhhHHHHHhhccCcee
Q 037858 37 SDHTVTVSVANRLEELYGGTA 57 (119)
Q Consensus 37 s~~~~~~~v~~~Lekl~~~ki 57 (119)
.+++.++.+++++-+..++.+
T Consensus 113 ~g~GlGL~iv~~~~~~~~G~i 133 (177)
T 3sl2_A 113 GGTGLGLAIAKEMVQAHGGDI 133 (177)
T ss_dssp CCCCCHHHHHHHHHHHTTCCE
T ss_pred CCCCcCHHHHHHHHHHcCCEE
Confidence 356777888888877777764
Done!