BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037859
(504 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 32/48 (66%), Gaps = 4/48 (8%)
Query: 328 TLSGLLNFIDGLWSASGEERIIVFT-TNYVDKLDPALIRRGRMDKHIE 374
T+ LLN +DG S ++R+ V TN VD LDPAL+R GR+D+ IE
Sbjct: 304 TMLELLNQLDGF---SSDDRVKVLAATNRVDVLDPALLRSGRLDRKIE 348
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Query: 328 TLSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIE 374
T+ LLN +DG ++ + I+ TN +D LDPAL+R GR+D+ IE
Sbjct: 271 TMLELLNQLDGFETSKNIK--IIMATNRLDILDPALLRPGRIDRKIE 315
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 31/46 (67%), Gaps = 2/46 (4%)
Query: 328 TLSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHI 373
T+ LLN +DG + G+ ++I TN ++ LDPALIR GR+D+ I
Sbjct: 305 TMLELLNQLDG-FDDRGDVKVI-MATNKIETLDPALIRPGRIDRKI 348
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 36/62 (58%), Gaps = 6/62 (9%)
Query: 328 TLSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSY----CCFEAF 383
TL LL +DG + G+ +II+ TN D LDPAL+R GR+D+ +E+ E F
Sbjct: 304 TLMELLTQMDG-FDNLGQTKIIM-ATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIF 361
Query: 384 KV 385
K+
Sbjct: 362 KI 363
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 58/148 (39%), Gaps = 31/148 (20%)
Query: 234 PPGTGKSTMIAAMANFLNYDVYDL------ELTTVQDNSELRSLLIDTSSKS--ILVIED 285
PPGTGK+ + A+A N + + EL + +R L + + I+ I++
Sbjct: 57 PPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDE 116
Query: 286 IDCSLDLTGQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTLSGLLNFIDGLWSASGE 345
ID G TL+ LL +DG S G
Sbjct: 117 IDAVGRHRGAGLGGGHDEREQ---------------------TLNQLLVEMDGFDSKEG- 154
Query: 346 ERIIVFTTNYVDKLDPALIRRGRMDKHI 373
I++ TN D LDPAL+R GR DK I
Sbjct: 155 -IIVMAATNRPDILDPALLRPGRFDKKI 181
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 328 TLSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHI 373
TL+ LL +DG S G I++ TN D LDPAL+R GR DK I
Sbjct: 138 TLNQLLVEMDGFDSKEG--IIVMAATNRPDILDPALLRPGRFDKKI 181
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 66/148 (44%), Gaps = 30/148 (20%)
Query: 234 PPGTGKSTMIAAMAN-----FLNYDVYD-LELTTVQDNSELRSLLIDTSSKS--ILVIED 285
PPG GK+ + A+A FL + +E+ + +RSL + +++ I+ I++
Sbjct: 47 PPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDE 106
Query: 286 IDCSLDLTGQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTLSGLLNFIDGLWSASGE 345
ID G++ TL+ LL +DG+ + +
Sbjct: 107 IDA----VGKKRSTTMSGFSNTEEEQ----------------TLNQLLVEMDGMGTT--D 144
Query: 346 ERIIVFTTNYVDKLDPALIRRGRMDKHI 373
I++ +TN D LD AL+R GR+D+H+
Sbjct: 145 HVIVLASTNRADILDGALMRPGRLDRHV 172
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 332 LLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIE 374
LL +DG ++ + ++ TN D LDPAL+R GR+D+ IE
Sbjct: 299 LLTQMDGFDQSTNVK--VIMATNRADTLDPALLRPGRLDRKIE 339
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 328 TLSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEM 375
TL LL +DG + A G+ +II TN D LDPA++R GR D+ IE+
Sbjct: 140 TLMQLLAEMDG-FDARGDVKII-GATNRPDILDPAILRPGRFDRIIEV 185
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 349 IVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEA 382
++F TN + LDPAL+R GR+D+ +E S E
Sbjct: 351 VMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEG 384
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Query: 328 TLSGLLNFIDGLWSASGEERIIVFT-TNYVDKLDPALIRRGRMDKHI 373
TL+ +L +DG G E IIV TN D LDPAL+R GR D+ +
Sbjct: 134 TLNQMLVEMDGF---EGNEGIIVIAATNRPDVLDPALLRPGRFDRQV 177
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 62/149 (41%), Gaps = 31/149 (20%)
Query: 234 PPGTGKSTMIAAMANFLNYDVYDL------ELTTVQDNSELRSLLIDTSSK---SILVIE 284
PPGTGK+ + A+A + + + E+ S +R L +T+ K SI+ I+
Sbjct: 52 PPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLF-ETAKKQAPSIIFID 110
Query: 285 DIDCSLDLTGQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTLSGLLNFIDGLWSASG 344
+ID G+ TL+ LL +DG S +
Sbjct: 111 EIDA----IGKSRAAGGVVSGNDEREQ----------------TLNQLLAEMDGFGSENA 150
Query: 345 EERIIVFTTNYVDKLDPALIRRGRMDKHI 373
I++ TN + LDPAL+R GR D+ +
Sbjct: 151 P-VIVLAATNRPEILDPALMRPGRFDRQV 178
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 13/102 (12%)
Query: 329 LSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEM----SYCCFEAFK 384
+S LL +DGL + I++ TN + +DPAL R GR D+ +++ + E +
Sbjct: 325 VSQLLTLMDGLKQRA--HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQ 382
Query: 385 VLAKNYLDIDSHELYAVIESMPAETNMTPADVAENLMPKCDE 426
+ KN D +L V N T V +L C E
Sbjct: 383 IHTKNMKLADDVDLEQV-------ANETHGHVGADLAALCSE 417
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 13/102 (12%)
Query: 329 LSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEM----SYCCFEAFK 384
+S LL +DGL + I++ TN + +DPAL R GR D+ +++ + E +
Sbjct: 325 VSQLLTLMDGLKQRA--HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQ 382
Query: 385 VLAKNYLDIDSHELYAVIESMPAETNMTPADVAENLMPKCDE 426
+ KN D +L V N T V +L C E
Sbjct: 383 IHTKNMKLADDVDLEQV-------ANETHGHVGADLAALCSE 417
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 13/102 (12%)
Query: 329 LSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEM----SYCCFEAFK 384
+S LL +DGL + I++ TN + +DPAL R GR D+ +++ + E +
Sbjct: 325 VSQLLTLMDGLKQRA--HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQ 382
Query: 385 VLAKNYLDIDSHELYAVIESMPAETNMTPADVAENLMPKCDE 426
+ KN D +L V N T V +L C E
Sbjct: 383 IHTKNMKLADDVDLEQV-------ANETHGHVGADLAALCSE 417
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 332 LLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHI 373
LL +DGL + ++ I+ TN D +DPA++R GR+DK +
Sbjct: 134 LLTEMDGLEAR--QQVFIMAATNRPDIIDPAILRPGRLDKTL 173
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 13/102 (12%)
Query: 329 LSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEM----SYCCFEAFK 384
+S LL +DGL + I++ TN + +DPAL R GR D+ +++ + E +
Sbjct: 325 VSQLLTLMDGLKQRA--HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQ 382
Query: 385 VLAKNYLDIDSHELYAVIESMPAETNMTPADVAENLMPKCDE 426
+ KN D +L V N T V +L C E
Sbjct: 383 IHTKNMKLADDVDLEQV-------ANETHGHVGADLAALCSE 417
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 328 TLSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHI 373
++ +L +DG+ ++ + I+ TN D +DPA++R GR+D+ I
Sbjct: 600 VINQILTEMDGM--STKKNVFIIGATNRPDIIDPAILRPGRLDQLI 643
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 13/102 (12%)
Query: 329 LSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEM----SYCCFEAFK 384
+S LL +DGL + I++ TN + +DPAL R GR D+ +++ + E +
Sbjct: 325 VSQLLTLMDGLKQRA--HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQ 382
Query: 385 VLAKNYLDIDSHELYAVIESMPAETNMTPADVAENLMPKCDE 426
+ KN D +L V N T V +L C E
Sbjct: 383 IHTKNMKLADDVDLEQV-------ANETHGHVGADLAALCSE 417
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 328 TLSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHI 373
++ +L +DG+ ++ + I+ TN D +DPA++R GR+D+ I
Sbjct: 600 VINQILTEMDGM--STKKNVFIIGATNRPDIIDPAILRPGRLDQLI 643
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 13/102 (12%)
Query: 329 LSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEM----SYCCFEAFK 384
+S LL +DGL + I++ TN + +DPAL R GR D+ +++ + E +
Sbjct: 325 VSQLLTLMDGLKQRA--HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQ 382
Query: 385 VLAKNYLDIDSHELYAVIESMPAETNMTPADVAENLMPKCDE 426
+ KN D +L V N T V +L C E
Sbjct: 383 IHTKNMKLADDVDLEQV-------ANETHGHVGADLAALCSE 417
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 328 TLSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEM 375
TL+ LL +DG + +++ TN D LDPAL+R GR D+ I +
Sbjct: 153 TLNQLLVEMDGFEKDTAI--VVMAATNRPDILDPALLRPGRFDRQIAI 198
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 328 TLSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEM 375
TL+ LL +DG + +++ TN D LDPAL+R GR D+ I +
Sbjct: 162 TLNQLLVEMDGFEKDTAI--VVMAATNRPDILDPALLRPGRFDRQIAI 207
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 328 TLSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEM 375
TL+ LL +DG + +++ TN D LDPAL+R GR D+ I +
Sbjct: 162 TLNQLLVEMDGFEKDTAI--VVMAATNRPDILDPALLRPGRFDRQIAI 207
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 328 TLSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEM 375
TL+ LL +DG + +++ TN D LDPAL+R GR D+ I +
Sbjct: 138 TLNQLLVEMDGFEKDTAI--VVMAATNRPDILDPALLRPGRFDRQIAI 183
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 234 PPGTGKSTMIAAMANFLNYDVYDLELTTVQDNSELRS 270
PPG GK+++ ++A L + L V+D SE+R
Sbjct: 116 PPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRG 152
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 328 TLSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHI 373
++ +L +DG+ ++ + I+ TN D +DPA++R GR+D+ I
Sbjct: 138 VINQILTEMDGM--STKKNVFIIGATNRPDIIDPAILRPGRLDQLI 181
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 234 PPGTGKSTMIAAMANFLNYDVYDLELTT 261
PPGTGK+T+ +A + N DV + T
Sbjct: 58 PPGTGKTTLAEVIARYANADVERISAVT 85
>pdb|3JVV|A Chain A, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVV|B Chain B, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVV|C Chain C, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVU|A Chain A, Crystal Structure Of Unliganded P. Aeruginosa Pilt
pdb|3JVU|B Chain B, Crystal Structure Of Unliganded P. Aeruginosa Pilt
pdb|3JVU|C Chain C, Crystal Structure Of Unliganded P. Aeruginosa Pilt
Length = 356
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 234 PPGTGKSTMIAAMANFLNYDVYDLELTTVQDNSE 267
P G+GKST +AAM ++LN Y + T++D E
Sbjct: 131 PTGSGKSTTLAAMLDYLNNTKYH-HILTIEDPIE 163
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 8/61 (13%)
Query: 234 PPGTGKSTMIAAMANFLNYDVYDLELTTVQDNSELRSLLIDTSSKSILVIED----IDCS 289
P G GKST++A + F YD E+ D SE+++L + + I ++ DCS
Sbjct: 1113 PSGCGKSTVVALLERF--YDTLGGEIFI--DGSEIKTLNPEHTRSQIAIVSQEPTLFDCS 1168
Query: 290 L 290
+
Sbjct: 1169 I 1169
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.132 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,480,998
Number of Sequences: 62578
Number of extensions: 437889
Number of successful extensions: 1324
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1277
Number of HSP's gapped (non-prelim): 57
length of query: 504
length of database: 14,973,337
effective HSP length: 103
effective length of query: 401
effective length of database: 8,527,803
effective search space: 3419649003
effective search space used: 3419649003
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)