BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037859
(504 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54DY9|BCS1B_DICDI Probable mitochondrial chaperone BCS1-B OS=Dictyostelium discoideum
GN=bcsl1b PE=3 SV=1
Length = 458
Score = 101 bits (251), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/225 (34%), Positives = 105/225 (46%), Gaps = 48/225 (21%)
Query: 190 YGWRSTKWSHVFFEHPA---TFDTLAMETKKKEEIKKDLKK-----------------GY 229
Y T W F HP ++ ++ K E I +D+KK GY
Sbjct: 187 YTSMGTDWRR--FGHPRRKRPISSVILDKGKSELIIQDVKKFLNNSDWYNDRGIPYRRGY 244
Query: 230 LLYGPPGTGKSTMIAAMANFLNYDVYDLELT--TVQDNSELRSLLIDTSSKSILVIEDID 287
LLYGPPGTGKS+ I A+A L + L L +V D S L LL +SI+++EDID
Sbjct: 245 LLYGPPGTGKSSFITALAGELQLSICILNLAGKSVSDTS-LNQLLATAPQRSIILLEDID 303
Query: 288 CSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGG-------------SKKSKVTLSGLLN 334
++ TG + + N GG S S +T SGLLN
Sbjct: 304 SAIQ-TGNHDLSA-------KSNSANAPSISSGGLQYQGYYGNPSVSSGGSALTFSGLLN 355
Query: 335 FIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCC 379
+DG+ A+ E RI+ TTN+++KLD LIR GR+D IE+ C
Sbjct: 356 ALDGV--AASEGRILFMTTNHLEKLDKVLIRPGRVDLQIEIGLCS 398
>sp|Q7ZV60|BCS1_DANRE Mitochondrial chaperone BCS1 OS=Danio rerio GN=bcs1l PE=2 SV=2
Length = 420
Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/217 (31%), Positives = 115/217 (52%), Gaps = 26/217 (11%)
Query: 226 KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELT--TVQDNSELRSLLIDTSSKSILVI 283
++GYLLYGPPG GKS+ I A+A L Y + + L+ ++ D+ L LL +SI+++
Sbjct: 223 RRGYLLYGPPGCGKSSFITALAGELGYSICLMSLSDRSLSDD-RLNHLLSVAPQQSIILL 281
Query: 284 EDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSAS 343
ED+D + E +NP+ + ++T SGLLN +DG+ AS
Sbjct: 282 EDVDAAF----------VSRELLPTENPLAYQ-------GMGRLTFSGLLNALDGV--AS 322
Query: 344 GEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCC-FEAFKVLAKNYLDIDSHELYAVI 402
E RI+ TTN++++LDPAL+R GR+D + +C ++ ++ + Y + E
Sbjct: 323 SEARIVFMTTNFIERLDPALVRPGRVDLKQYVGHCSHWQLTQMFRRFYPQESAAEADHFS 382
Query: 403 E-SMPAETNMTPADVAENLMPKCDEDDTETCLKNLIE 438
E ++ A T+++ A V + M + D +KN+ E
Sbjct: 383 EQALAAHTDLSAAQVQGHFM--LYKTDPAGAIKNIAE 417
>sp|Q9CZP5|BCS1_MOUSE Mitochondrial chaperone BCS1 OS=Mus musculus GN=Bcs1l PE=1 SV=1
Length = 418
Score = 100 bits (248), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 68/198 (34%), Positives = 100/198 (50%), Gaps = 36/198 (18%)
Query: 226 KKGYLLYGPPGTGKSTMIAAMANFLNYDV-YDLELTTVQDNSELRSLLIDTSSKSILVIE 284
++GYLLYGPPG GKS+ I A+A L + + + + L LL +S++++E
Sbjct: 223 RRGYLLYGPPGCGKSSFITALAGELEHSICLLSLTDSSLSDDRLNHLLSVAPQQSLVLLE 282
Query: 285 DIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASG 344
D+D + D +NPI+ + ++T SGLLN +DG+ AS
Sbjct: 283 DVDAAF-----------LSRDLAVENPIKYQ-------GLGRLTFSGLLNALDGV--AST 322
Query: 345 EERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCC-------FEAF-----KVLAKNYLD 392
E RI+ TTNY+D+LDPALIR GR+D + YC F+ F LA+N+ +
Sbjct: 323 EARIVFMTTNYIDRLDPALIRPGRVDLKEYVGYCSHWQLTQMFQRFYPGQAPSLAENFAE 382
Query: 393 IDSHELYAVIESMPAETN 410
H L A E PA+
Sbjct: 383 ---HVLKATSEISPAQVQ 397
>sp|Q5E9H5|BCS1_BOVIN Mitochondrial chaperone BCS1 OS=Bos taurus GN=BCS1L PE=2 SV=1
Length = 419
Score = 98.6 bits (244), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 102/209 (48%), Gaps = 43/209 (20%)
Query: 226 KKGYLLYGPPGTGKSTMIAAMANFLNYDV-YDLELTTVQDNSELRSLLIDTSSKSILVIE 284
++GYLLYGPPG GKS+ I A+A L + + + + L LL +S++++E
Sbjct: 223 RRGYLLYGPPGCGKSSFITALAGELQHSICLLSLTDSSLSDDRLNHLLSVAPQQSLVLLE 282
Query: 285 DIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASG 344
D+D + D +NPI+ + ++T SGLLN +DG+ AS
Sbjct: 283 DVDAAF-----------LSRDLAAENPIKYQ-------GLGRLTFSGLLNALDGV--AST 322
Query: 345 EERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCC-------FEAF-----KVLAKNYLD 392
E RI+ TTN++D+LDPALIR GR+D + +C F+ F LA+N+ D
Sbjct: 323 EARIVFMTTNHIDRLDPALIRPGRVDMKEYVGHCSRWQLTQMFQRFYPGQATSLAENFAD 382
Query: 393 IDSHELYAVIESMPAETNMTPADVAENLM 421
+ A T ++PA V M
Sbjct: 383 ----------RVLQATTQISPAQVQGYFM 401
>sp|Q5UR45|YL572_MIMIV Putative AAA family ATPase L572 OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_L572 PE=3 SV=1
Length = 196
Score = 98.2 bits (243), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/143 (41%), Positives = 92/143 (64%), Gaps = 8/143 (5%)
Query: 242 MIAAMANFLNYDVYDLELTTVQDNSELRSLLIDTSSK-SILVIEDIDCSLDLTGQREKKK 300
MI A++ ++ L L +QD++EL +LL + K +ILV+EDIDC+ + R K++
Sbjct: 1 MIKAISTHTKRHIHYLILNNIQDDNELINLLNAVNCKETILVLEDIDCASEAVKSRAKEE 60
Query: 301 EKDEDK--EEKNPIEKKEKEDG---GSKKSKVTLSGLLNFIDGLWSASGEERIIVFTTNY 355
E +K ++K+ +E K D K SK+TLSG+LN +DG++++ G RI++ TTN+
Sbjct: 61 ETVVEKVTDDKSTLENKILADQLKKVEKVSKLTLSGILNSLDGIFNSEG--RIVIMTTNH 118
Query: 356 VDKLDPALIRRGRMDKHIEMSYC 378
+ LDPALIRRGR+D IE S C
Sbjct: 119 SEVLDPALIRRGRIDMQIEFSNC 141
>sp|Q7ZTL7|BCS1_XENLA Mitochondrial chaperone BCS1 OS=Xenopus laevis GN=bcs1l PE=2 SV=1
Length = 419
Score = 97.8 bits (242), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 83/154 (53%), Gaps = 21/154 (13%)
Query: 226 KKGYLLYGPPGTGKSTMIAAMANFLNYDV-YDLELTTVQDNSELRSLLIDTSSKSILVIE 284
++GYLLYGPPG GKS+ I A+A L Y + + + L LL +SI+++E
Sbjct: 223 RRGYLLYGPPGCGKSSFITALAGELEYSICLMSLSDSSLSDDRLNHLLSVAPQQSIILLE 282
Query: 285 DIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASG 344
D+D + D ++NP + ++T SGLLN +DG+ AS
Sbjct: 283 DVDAAF-----------VSRDLNKQNPTAYQ-------GMGRLTFSGLLNALDGV--AST 322
Query: 345 EERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYC 378
E RI+ TTN++D+LDPALIR GR+D + +C
Sbjct: 323 EARIVFMTTNHIDRLDPALIRPGRVDVKQYVGHC 356
>sp|Q9Y276|BCS1_HUMAN Mitochondrial chaperone BCS1 OS=Homo sapiens GN=BCS1L PE=1 SV=1
Length = 419
Score = 97.1 bits (240), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 100/198 (50%), Gaps = 36/198 (18%)
Query: 226 KKGYLLYGPPGTGKSTMIAAMANFLNYDV-YDLELTTVQDNSELRSLLIDTSSKSILVIE 284
++GYLLYGPPG GKS+ I A+A L + + + + L LL +S++++E
Sbjct: 223 RRGYLLYGPPGCGKSSFITALAGELEHSICLLSLTDSSLSDDRLNHLLSVAPQQSLVLLE 282
Query: 285 DIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASG 344
D+D + D +NP++ + ++T SGLLN +DG+ AS
Sbjct: 283 DVDAAF-----------LSRDLAVENPVKYQ-------GLGRLTFSGLLNALDGV--AST 322
Query: 345 EERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCC-------FEAF-----KVLAKNYLD 392
E RI+ TTN+VD+LDPALIR GR+D + YC F+ F LA+N+ +
Sbjct: 323 EARIVFMTTNHVDRLDPALIRPGRVDLKEYVGYCSHWQLTQMFQRFYPGQAPSLAENFAE 382
Query: 393 IDSHELYAVIESMPAETN 410
H L A + PA+
Sbjct: 383 ---HVLRATNQISPAQVQ 397
>sp|Q9P6Q3|BCS1_SCHPO Probable mitochondrial chaperone bcs1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC644.07 PE=2 SV=1
Length = 449
Score = 95.1 bits (235), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 102/199 (51%), Gaps = 49/199 (24%)
Query: 194 STKWSHVFFEHPAT---FDTLAMETKKKEEIKKDL-----------------KKGYLLYG 233
+T+W F HP + ++ +E+ K+ I D+ ++GYLLYG
Sbjct: 192 ATEWKP--FGHPRSKRMLSSVVLESNVKKMITDDVHDFLRNSQWYDTRGIPYRRGYLLYG 249
Query: 234 PPGTGKSTMIAAMANFLNYDVYDLELT--TVQDNSELRSLLIDTSSKSILVIEDIDCSLD 291
PPG+GK++ + A+A L+YD+ L L + D+ L LL + K+++++ED+D +
Sbjct: 250 PPGSGKTSFLYALAGELDYDICVLNLAEKGLTDD-RLNHLLSNVPPKAVVLLEDVDSAF- 307
Query: 292 LTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERIIVF 351
+ +E+ + VT SGLLN +DG+ S +ERII
Sbjct: 308 ---------------------QGRERSGEVGFHANVTFSGLLNALDGV--TSSDERIIFM 344
Query: 352 TTNYVDKLDPALIRRGRMD 370
TTN+ +KLDPAL+R GR+D
Sbjct: 345 TTNHPEKLDPALVRPGRVD 363
>sp|Q54HY8|BCS1A_DICDI Probable mitochondrial chaperone BCS1-A OS=Dictyostelium discoideum
GN=bcs1la PE=3 SV=1
Length = 421
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/152 (38%), Positives = 88/152 (57%), Gaps = 20/152 (13%)
Query: 226 KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQ-DNSELRSLLIDTSSKSILVIE 284
++GYLLYG PG GKS++I A+A LN D+ + L++ D+ ++ LL + KSIL+IE
Sbjct: 221 RRGYLLYGEPGNGKSSLINAIAGELNLDICIVSLSSKDIDDKQINHLLNNAPPKSILLIE 280
Query: 285 DIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASG 344
DID + K ++ ++ + + +T SGLLN +DG+ AS
Sbjct: 281 DIDAAF---------------KSHRDNVDSNNNNS--NNNNSLTYSGLLNALDGV--ASQ 321
Query: 345 EERIIVFTTNYVDKLDPALIRRGRMDKHIEMS 376
E RI+ TTN ++ LD ALIR GR+D I++S
Sbjct: 322 EGRILFMTTNKIELLDSALIREGRIDLKIKVS 353
>sp|P32839|BCS1_YEAST Mitochondrial chaperone BCS1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=BCS1 PE=1 SV=2
Length = 456
Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 111/225 (49%), Gaps = 41/225 (18%)
Query: 226 KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQ-DNSELRSLLIDTSSKSILVIE 284
++GYLLYGPPG+GK++ I A+A L+Y++ L L+ + L L+ + +SIL++E
Sbjct: 260 RRGYLLYGPPGSGKTSFIQALAGELDYNICILNLSENNLTDDRLNHLMNNMPERSILLLE 319
Query: 285 DIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASG 344
DID + + +R + E+ S VT SGLLN +DG+ S
Sbjct: 320 DIDAAFN---KRSQTGEQ-------------------GFHSSVTFSGLLNALDGV--TSS 355
Query: 345 EERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDIDSHELYAVIES 404
EE I TTN+ +KLD A++R GR+D +KV N +++ ++
Sbjct: 356 EETITFMTTNHPEKLDAAIMRPGRID------------YKVFVGNATPYQVEKMF--MKF 401
Query: 405 MPAETNMTPADVAENLMPKCDEDDTETCLKNLIEALKAAKEEAIK 449
P ET++ V N + + D + L+ L K A +A+K
Sbjct: 402 YPGETDICKKFV--NSVKELDITVSTAQLQGLFVMNKDAPHDALK 444
>sp|O28972|Y1297_ARCFU Cell division cycle protein 48 homolog AF_1297 OS=Archaeoglobus
fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM
9628 / NBRC 100126) GN=AF_1297 PE=3 SV=1
Length = 733
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 71/274 (25%), Positives = 107/274 (39%), Gaps = 77/274 (28%)
Query: 202 FEHPATFDTLAMETKKKEEIKKDLKKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTT 261
+HP F L +E K G LLYGPPGTGK+ + A+AN ++ +
Sbjct: 202 LKHPELFQRLGIEPPK----------GVLLYGPPGTGKTLIAKAVANEVDAHFIPISGPE 251
Query: 262 V------QDNSELRSLLIDT--SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIE 313
+ + LR + + ++ SI+ I++ID I
Sbjct: 252 IMSKYYGESEQRLREIFEEAKENAPSIIFIDEIDS-----------------------IA 288
Query: 314 KKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHI 373
K +E G + +V ++ LL +DGL A G + I++ TN D +DPAL R GR D+ I
Sbjct: 289 PKREEVTGEVERRV-VAQLLALMDGL-EARG-DVIVIAATNRPDAIDPALRRPGRFDREI 345
Query: 374 EMSY----------------------CCFEAFKVLAKNYLDID---------SHELYAVI 402
E+ E L ++ D H L V+
Sbjct: 346 EIGVPDKEGRKEILEIHTRKMPLAEDVDLEELAELTNGFVGADLEALCKEAAMHALRRVL 405
Query: 403 ESMPAETNMTPADVAENLMPKCDEDDTETCLKNL 436
+ E PA+V ENL K +D LKN+
Sbjct: 406 PEIDIEAEEIPAEVIENL--KVTREDFMEALKNI 437
Score = 52.8 bits (125), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 73/269 (27%), Positives = 119/269 (44%), Gaps = 57/269 (21%)
Query: 227 KGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQDNSELRSLLIDTSSKSILVI--- 283
+G LL+GPPGTGK+ + A+AN N + ++ EL S + S K + +
Sbjct: 490 RGILLFGPPGTGKTLLAKAVANESNANFISVK------GPELLSKWVGESEKHVREMFRK 543
Query: 284 --EDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVT---LSGLLNFIDG 338
+ C + DE I+ GG S VT +S LL +DG
Sbjct: 544 ARQVAPCVIFF----------DE-------IDSLAPRRGGIGDSHVTERVVSQLLTELDG 586
Query: 339 LWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMS----YCCFEAFKVLAKNYL--- 391
L ++ +++ TN D +DPAL+R GR+++HI + E FK+ +
Sbjct: 587 LEEL--KDVVVIAATNRPDMIDPALLRPGRLERHIYIPPPDKKARVEIFKIHLRGKPLAD 644
Query: 392 DIDSHELY--------AVIESMPAETNMTPADVAENLMPKCDEDDTETCLKNLIEALKAA 443
D++ EL A IE++ E M + E + P ++ + K L + K
Sbjct: 645 DVNIEELAEKTEGYSGADIEAVCREAGML--AIRELIKPGMTREEAKEAAKKL-KITKKH 701
Query: 444 KEEAIKK-----TEEEARKFSR-IENRYR 466
EEA+KK T+E+ K+ + IE+ +R
Sbjct: 702 FEEALKKVRPSLTKEDVEKYEKLIEDFHR 730
>sp|Q9CD58|FTSH_MYCLE ATP-dependent zinc metalloprotease FtsH OS=Mycobacterium leprae
(strain TN) GN=ftsH PE=3 SV=1
Length = 787
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 73/273 (26%), Positives = 116/273 (42%), Gaps = 52/273 (19%)
Query: 201 FFEHPATFDTLAMETKKKEEIKKDLKKGYLLYGPPGTGKSTMIAAMAN-----FLNYDVY 255
F ++P + TL + + KG LLYGPPGTGK+ + A+A F
Sbjct: 181 FLQNPCRYQTLGAK----------IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGS 230
Query: 256 D-LELTTVQDNSELRSLL--IDTSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPI 312
D +E+ S +R L +S I+ +++ID G+
Sbjct: 231 DFVEMFVGVGASRVRDLFDQAKQNSPCIIFVDEIDA----VGR----------------- 269
Query: 313 EKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKH 372
++ GG + + TL+ LL +DG +G I++ TN D LDPAL+R GR D+
Sbjct: 270 QRGTGLGGGHDEREQTLNQLLVEMDGFGDRAGV--ILIAATNRPDILDPALLRPGRFDRQ 327
Query: 373 IEMSYCCFEA----FKVLAKNYLDIDSHELYAVIESMPAETNMTPADVAENLMPKCDEDD 428
I +S +V +K D +L + + MT AD+A N++ +E
Sbjct: 328 IPVSNPDLAGRRAVLRVHSKGKPIADDADLDGLAKRT---VGMTGADLA-NVV---NEAA 380
Query: 429 TETCLKNLIEALKAAKEEAIKKTEEEARKFSRI 461
T +N + A EEA+ + R+ RI
Sbjct: 381 LLTARENGLVITGPALEEAVDRVIGGPRRKGRI 413
>sp|C0ZPK5|FTSH_RHOE4 ATP-dependent zinc metalloprotease FtsH OS=Rhodococcus erythropolis
(strain PR4 / NBRC 100887) GN=ftsH PE=3 SV=1
Length = 854
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/276 (24%), Positives = 119/276 (43%), Gaps = 46/276 (16%)
Query: 201 FFEHPATFDTLAMETKKKEEIKKDLKKGYLLYGPPGTGKSTMIAAMAN-----FLNYDVY 255
F ++PA + L + + +G LLYGPPGTGK+ + A+A F
Sbjct: 185 FLQNPARYQALGAK----------IPRGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGS 234
Query: 256 D-LELTTVQDNSELRSLL--IDTSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPI 312
D +E+ S +R + +S I+ +++ID G+
Sbjct: 235 DFVEMFVGVGASRVRDMFEQAKQNSPCIIFVDEIDA----VGR----------------- 273
Query: 313 EKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKH 372
++ GG + + TL+ LL +DG +G I++ TN D LDPAL+R GR D+
Sbjct: 274 QRGAGLGGGHDEREQTLNQLLVEMDGFGDRTG--IILIAATNRPDILDPALLRPGRFDRQ 331
Query: 373 IEMSYCCFEAFKVLAKNYLDIDSHELYAVIESMPAET-NMTPADVAENLMPKCDEDDTET 431
I + + + + + + A +E + T M+ AD+A + +E T
Sbjct: 332 IPVGAPDLAGRRAILRVHSQGKPIDPNADLEGLAKRTVGMSGADLANVI----NEAALLT 387
Query: 432 CLKNLIEALKAAKEEAIKKTEEEARKFSRIENRYRK 467
+N +A+ EE++ + R+ SRI + + K
Sbjct: 388 ARENGTVITEASLEESVDRVVGGPRRKSRIISEHEK 423
>sp|Q8SR13|PRS6A_ENCCU 26S protease regulatory subunit 6A OS=Encephalitozoon cuniculi
(strain GB-M1) GN=RPT5 PE=1 SV=1
Length = 401
Score = 67.4 bits (163), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 80/179 (44%), Gaps = 41/179 (22%)
Query: 204 HPATFDTLAMETKKKEEIKKDLKKGYLLYGPPGTGKSTMIAAMAN-----FLNYDVYDLE 258
HP F+ L ++ K G L+YGPPGTGK+ M A A+ FL L
Sbjct: 170 HPERFEKLNIKPPK----------GVLMYGPPGTGKTLMARACASKTNATFLKLAGPQLV 219
Query: 259 LTTVQDNSELRS---LLIDTSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKK 315
+ D + L L +I+ I++ID K D D+
Sbjct: 220 QMYIGDGARLVRDAFALAKERKPTIIFIDEIDAI--------GAKRSDSDQT-------- 263
Query: 316 EKEDGGSKKSKVTLSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIE 374
G ++ + T+ LLN +DG +S EE I+ TN VD LDPAL+R GR+D+ IE
Sbjct: 264 -----GDREVQRTMLELLNQLDGF--SSSEEVKIIAATNRVDILDPALLRSGRLDRKIE 315
>sp|O04019|PS6AB_ARATH 26S protease regulatory subunit 6A homolog B OS=Arabidopsis
thaliana GN=RPT5B PE=1 SV=3
Length = 423
Score = 67.0 bits (162), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 78/165 (47%), Gaps = 33/165 (20%)
Query: 227 KGYLLYGPPGTGKSTMIAAMA-----NFLNYDVYDLELTTVQDNSELRS---LLIDTSSK 278
KG LLYGPPGTGK+ M A A FL L + D ++L LL S
Sbjct: 205 KGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFLLAKEKSP 264
Query: 279 SILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDG 338
I+ I++ID G + + + E G ++ + T+ LLN +DG
Sbjct: 265 CIIFIDEIDA----IGTK-----------------RFDSEVSGDREVQRTMLELLNQLDG 303
Query: 339 LWSASGEERI-IVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEA 382
S ++RI ++ TN D LDPAL+R GR+D+ IE + EA
Sbjct: 304 F---SSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEA 345
>sp|Q7UUZ7|FTSH1_RHOBA ATP-dependent zinc metalloprotease FtsH 1 OS=Rhodopirellula baltica
(strain SH1) GN=ftsH1 PE=3 SV=1
Length = 672
Score = 66.6 bits (161), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 95/216 (43%), Gaps = 44/216 (20%)
Query: 216 KKKEEIKKDLKKGYLLYGPPGTGKSTMIAAMANFLNYDVYD------LELTTVQDNSELR 269
+K +++ + KG LL GPPGTGK+ + A+A + + +++ S +R
Sbjct: 220 EKFQKLGGQVPKGVLLNGPPGTGKTLLARAVAGEADVPFFSVNGSEFIQMFVGVGASRVR 279
Query: 270 SLL--IDTSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKV 327
L S SI+ I++ID G+ ++ GG + +
Sbjct: 280 DLFKTAKEQSPSIIFIDEIDA----VGR-----------------QRGAGLGGGHDEREQ 318
Query: 328 TLSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCF----EAF 383
TL+ +L +DG A + I++ TN D LDPAL+R GR D+H+ + E F
Sbjct: 319 TLNQILGEMDGFGGA--QAVIVIAATNRPDVLDPALLRPGRFDRHVTVGRPTMKGREEIF 376
Query: 384 KVLAKNYL---DIDSHELYAVIESMPAETNMTPADV 416
KV ++ D+D H L A +T AD+
Sbjct: 377 KVHVRDVPLGDDVDLHRLAA------GTVGLTGADI 406
>sp|P48601|PRS4_DROME 26S protease regulatory subunit 4 OS=Drosophila melanogaster
GN=Pros26.4 PE=2 SV=2
Length = 439
Score = 66.2 bits (160), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 84/164 (51%), Gaps = 31/164 (18%)
Query: 219 EEIKKDLKKGYLLYGPPGTGKSTMIAAMAN-----FLNYDVYDLELTTVQDNSEL-RSL- 271
EE+ KG +LYGPPGTGK+ + A+AN FL +L + D +L R L
Sbjct: 211 EEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELF 270
Query: 272 -LIDTSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLS 330
+ + + SI+ I++ID G + + + GG ++ + T+
Sbjct: 271 RVAEEHAPSIVFIDEIDA----VGTK-----------------RYDSNSGGEREIQRTML 309
Query: 331 GLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIE 374
LLN +DG + + G+ ++I TN ++ LDPALIR GR+D+ IE
Sbjct: 310 ELLNQLDG-FDSRGDVKVI-MATNRIETLDPALIRPGRIDRKIE 351
>sp|P0C5C0|FTSH_MYCTU ATP-dependent zinc metalloprotease FtsH OS=Mycobacterium
tuberculosis GN=ftsH PE=1 SV=1
Length = 760
Score = 66.2 bits (160), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 69/270 (25%), Positives = 113/270 (41%), Gaps = 46/270 (17%)
Query: 201 FFEHPATFDTLAMETKKKEEIKKDLKKGYLLYGPPGTGKSTMIAAMAN-----FLNYDVY 255
F ++P+ + L + + KG LLYGPPGTGK+ + A+A F
Sbjct: 181 FLQNPSRYQALGAK----------IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGS 230
Query: 256 D-LELTTVQDNSELRSLL--IDTSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPI 312
D +E+ S +R L +S I+ +++ID G+
Sbjct: 231 DFVEMFVGVGASRVRDLFEQAKQNSPCIIFVDEIDA----VGR----------------- 269
Query: 313 EKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKH 372
++ GG + + TL+ LL +DG +G I++ TN D LDPAL+R GR D+
Sbjct: 270 QRGAGLGGGHDEREQTLNQLLVEMDGFGDRAGV--ILIAATNRPDILDPALLRPGRFDRQ 327
Query: 373 IEMSYCCFEAFKVLAKNYLDIDSHELYAVIESMPAET-NMTPADVAENLMPKCDEDDTET 431
I +S + + + + A ++ + T MT AD+A + +E T
Sbjct: 328 IPVSNPDLAGRRAVLRVHSKGKPMAADADLDGLAKRTVGMTGADLANVI----NEAALLT 383
Query: 432 CLKNLIEALKAAKEEAIKKTEEEARKFSRI 461
+N A EEA+ + R+ RI
Sbjct: 384 ARENGTVITGPALEEAVDRVIGGPRRKGRI 413
>sp|A5U8T5|FTSH_MYCTA ATP-dependent zinc metalloprotease FtsH OS=Mycobacterium
tuberculosis (strain ATCC 25177 / H37Ra) GN=ftsH PE=3
SV=1
Length = 760
Score = 66.2 bits (160), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 69/270 (25%), Positives = 113/270 (41%), Gaps = 46/270 (17%)
Query: 201 FFEHPATFDTLAMETKKKEEIKKDLKKGYLLYGPPGTGKSTMIAAMAN-----FLNYDVY 255
F ++P+ + L + + KG LLYGPPGTGK+ + A+A F
Sbjct: 181 FLQNPSRYQALGAK----------IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGS 230
Query: 256 D-LELTTVQDNSELRSLL--IDTSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPI 312
D +E+ S +R L +S I+ +++ID G+
Sbjct: 231 DFVEMFVGVGASRVRDLFEQAKQNSPCIIFVDEIDA----VGR----------------- 269
Query: 313 EKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKH 372
++ GG + + TL+ LL +DG +G I++ TN D LDPAL+R GR D+
Sbjct: 270 QRGAGLGGGHDEREQTLNQLLVEMDGFGDRAGV--ILIAATNRPDILDPALLRPGRFDRQ 327
Query: 373 IEMSYCCFEAFKVLAKNYLDIDSHELYAVIESMPAET-NMTPADVAENLMPKCDEDDTET 431
I +S + + + + A ++ + T MT AD+A + +E T
Sbjct: 328 IPVSNPDLAGRRAVLRVHSKGKPMAADADLDGLAKRTVGMTGADLANVI----NEAALLT 383
Query: 432 CLKNLIEALKAAKEEAIKKTEEEARKFSRI 461
+N A EEA+ + R+ RI
Sbjct: 384 ARENGTVITGPALEEAVDRVIGGPRRKGRI 413
>sp|P0A4V9|FTSH_MYCBO ATP-dependent zinc metalloprotease FtsH OS=Mycobacterium bovis
(strain ATCC BAA-935 / AF2122/97) GN=ftsH PE=3 SV=1
Length = 760
Score = 66.2 bits (160), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 69/270 (25%), Positives = 113/270 (41%), Gaps = 46/270 (17%)
Query: 201 FFEHPATFDTLAMETKKKEEIKKDLKKGYLLYGPPGTGKSTMIAAMAN-----FLNYDVY 255
F ++P+ + L + + KG LLYGPPGTGK+ + A+A F
Sbjct: 181 FLQNPSRYQALGAK----------IPKGVLLYGPPGTGKTLLARAVAGEAGVPFFTISGS 230
Query: 256 D-LELTTVQDNSELRSLL--IDTSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPI 312
D +E+ S +R L +S I+ +++ID G+
Sbjct: 231 DFVEMFVGVGASRVRDLFEQAKQNSPCIIFVDEIDA----VGR----------------- 269
Query: 313 EKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKH 372
++ GG + + TL+ LL +DG +G I++ TN D LDPAL+R GR D+
Sbjct: 270 QRGAGLGGGHDEREQTLNQLLVEMDGFGDRAGV--ILIAATNRPDILDPALLRPGRFDRQ 327
Query: 373 IEMSYCCFEAFKVLAKNYLDIDSHELYAVIESMPAET-NMTPADVAENLMPKCDEDDTET 431
I +S + + + + A ++ + T MT AD+A + +E T
Sbjct: 328 IPVSNPDLAGRRAVLRVHSKGKPMAADADLDGLAKRTVGMTGADLANVI----NEAALLT 383
Query: 432 CLKNLIEALKAAKEEAIKKTEEEARKFSRI 461
+N A EEA+ + R+ RI
Sbjct: 384 ARENGTVITGPALEEAVDRVIGGPRRKGRI 413
>sp|P46465|PRS6A_ORYSJ 26S protease regulatory subunit 6A homolog OS=Oryza sativa subsp.
japonica GN=TBP1 PE=2 SV=2
Length = 429
Score = 66.2 bits (160), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 77/165 (46%), Gaps = 33/165 (20%)
Query: 227 KGYLLYGPPGTGKSTMIAAMA-----NFLNYDVYDLELTTVQDNSELRS---LLIDTSSK 278
KG LLYGPPGTGK+ M A A FL L + D ++L L S
Sbjct: 211 KGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSP 270
Query: 279 SILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDG 338
I+ I++ID G + + + E G ++ + T+ LLN +DG
Sbjct: 271 CIIFIDEIDA----IGTK-----------------RFDSEVSGDREVQRTMLELLNQLDG 309
Query: 339 LWSASGEERI-IVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEA 382
S +ERI ++ TN D LDPAL+R GR+D+ IE + EA
Sbjct: 310 F---SSDERIKVIAATNRADILDPALMRSGRLDRKIEFPHPSEEA 351
>sp|P62193|PRS4_RAT 26S protease regulatory subunit 4 OS=Rattus norvegicus GN=Psmc1
PE=2 SV=1
Length = 440
Score = 65.9 bits (159), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 84/164 (51%), Gaps = 31/164 (18%)
Query: 219 EEIKKDLKKGYLLYGPPGTGKSTMIAAMAN-----FLNYDVYDLELTTVQDNSEL-RSL- 271
EE+ KG +LYGPPGTGK+ + A+AN FL +L + D +L R L
Sbjct: 212 EEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELF 271
Query: 272 -LIDTSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLS 330
+ + + SI+ I++ID G + + + GG ++ + T+
Sbjct: 272 RVAEEHAPSIVFIDEIDA----IGTK-----------------RYDSNSGGEREIQRTML 310
Query: 331 GLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIE 374
LLN +DG + + G+ ++I TN ++ LDPALIR GR+D+ IE
Sbjct: 311 ELLNQLDG-FDSRGDVKVI-MATNRIETLDPALIRPGRIDRKIE 352
>sp|P62192|PRS4_MOUSE 26S protease regulatory subunit 4 OS=Mus musculus GN=Psmc1 PE=1
SV=1
Length = 440
Score = 65.9 bits (159), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 84/164 (51%), Gaps = 31/164 (18%)
Query: 219 EEIKKDLKKGYLLYGPPGTGKSTMIAAMAN-----FLNYDVYDLELTTVQDNSEL-RSL- 271
EE+ KG +LYGPPGTGK+ + A+AN FL +L + D +L R L
Sbjct: 212 EEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELF 271
Query: 272 -LIDTSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLS 330
+ + + SI+ I++ID G + + + GG ++ + T+
Sbjct: 272 RVAEEHAPSIVFIDEIDA----IGTK-----------------RYDSNSGGEREIQRTML 310
Query: 331 GLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIE 374
LLN +DG + + G+ ++I TN ++ LDPALIR GR+D+ IE
Sbjct: 311 ELLNQLDG-FDSRGDVKVI-MATNRIETLDPALIRPGRIDRKIE 352
>sp|P62191|PRS4_HUMAN 26S protease regulatory subunit 4 OS=Homo sapiens GN=PSMC1 PE=1
SV=1
Length = 440
Score = 65.9 bits (159), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 84/164 (51%), Gaps = 31/164 (18%)
Query: 219 EEIKKDLKKGYLLYGPPGTGKSTMIAAMAN-----FLNYDVYDLELTTVQDNSEL-RSL- 271
EE+ KG +LYGPPGTGK+ + A+AN FL +L + D +L R L
Sbjct: 212 EEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELF 271
Query: 272 -LIDTSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLS 330
+ + + SI+ I++ID G + + + GG ++ + T+
Sbjct: 272 RVAEEHAPSIVFIDEIDA----IGTK-----------------RYDSNSGGEREIQRTML 310
Query: 331 GLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIE 374
LLN +DG + + G+ ++I TN ++ LDPALIR GR+D+ IE
Sbjct: 311 ELLNQLDG-FDSRGDVKVI-MATNRIETLDPALIRPGRIDRKIE 352
>sp|O18413|PRS8_DROME 26S protease regulatory subunit 8 OS=Drosophila melanogaster
GN=Pros45 PE=1 SV=2
Length = 405
Score = 65.9 bits (159), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 82/181 (45%), Gaps = 41/181 (22%)
Query: 202 FEHPATFDTLAMETKKKEEIKKDLKKGYLLYGPPGTGKSTMIAAMAN-----FLNYDVYD 256
+HP FD L + K G LLYGPPGTGK+ + A+A+ F+ +
Sbjct: 168 VKHPELFDALGIAQPK----------GVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSE 217
Query: 257 LELTTVQDNSEL-RSLLIDTS--SKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIE 313
L + + S + R L + + SI+ +++ID G
Sbjct: 218 LVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDS----IGS-----------------S 256
Query: 314 KKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHI 373
+ E GG + + T+ LLN +DG + + ++ TN +D LDPAL+R GR+D+ I
Sbjct: 257 RIESGSGGDSEVQRTMLELLNQLDGFEATKNIK--VIMATNRIDILDPALLRPGRIDRKI 314
Query: 374 E 374
E
Sbjct: 315 E 315
>sp|Q9HPF0|CDCH_HALSA Protein CdcH OS=Halobacterium salinarum (strain ATCC 700922 / JCM
11081 / NRC-1) GN=cdcH PE=3 SV=1
Length = 742
Score = 65.5 bits (158), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 84/197 (42%), Gaps = 52/197 (26%)
Query: 193 RSTKWSHVFFEHPATFDTLAMETKKKEEIKKDLKKGYLLYGPPGTGKSTMIAAMANFLNY 252
R + + +HP F L +E + G LL+GPPGTGK+ + A+AN +
Sbjct: 200 RVREMVELPMKHPQIFQKLGIEPPQ----------GVLLHGPPGTGKTLLAKAVANETSA 249
Query: 253 DVYDLELTTV------QDNSELRSLLIDT--SSKSILVIEDIDCSL----DLTGQREKKK 300
+ + + + +LR + D S SI+ I+++D D+TG+ E++
Sbjct: 250 SFFSIAGPEIISKYYGESEQQLREIFEDAKDDSPSIIFIDELDSIAPKREDVTGEVERR- 308
Query: 301 EKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERIIVFTTNYVDKLD 360
++ LL +DGL + I++ TN VD +D
Sbjct: 309 ---------------------------VVAQLLTMMDGLEGRG--QVIVIAATNRVDAVD 339
Query: 361 PALIRRGRMDKHIEMSY 377
PAL R GR D+ IE+
Sbjct: 340 PALRRPGRFDREIEIGV 356
Score = 60.1 bits (144), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 76/165 (46%), Gaps = 25/165 (15%)
Query: 228 GYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQDNSELRSLLIDTSSKSILVIEDID 287
G LLYGPPGTGK+ M A+AN N + + +L S + S K+I
Sbjct: 498 GVLLYGPPGTGKTLMAKAVANETNANFISVR------GPQLLSKWVGESEKAIR------ 545
Query: 288 CSLDLTGQREKKKEKDEDK----EEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSAS 343
Q +K + +E + + + GG+ S+ ++ LL +DGL
Sbjct: 546 -------QTFRKARQVAPTVIFFDELDSLAPGRGQTGGNNVSERVVNQLLTELDGLEEM- 597
Query: 344 GEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAK 388
EE +++ TN D +DPALIR GR D+ +++ E + + K
Sbjct: 598 -EEVMVIAATNRPDIIDPALIRSGRFDRLVQVGQPGIEGREQILK 641
>sp|P54814|PRS8_MANSE 26S protease regulatory subunit 8 OS=Manduca sexta PE=2 SV=1
Length = 402
Score = 65.5 bits (158), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 82/181 (45%), Gaps = 41/181 (22%)
Query: 202 FEHPATFDTLAMETKKKEEIKKDLKKGYLLYGPPGTGKSTMIAAMAN-----FLNYDVYD 256
+HP FD L + K G LLYGPPGTGK+ + A+A+ F+ +
Sbjct: 165 VKHPELFDALGIAQPK----------GVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSE 214
Query: 257 LELTTVQDNSEL-RSLLIDTS--SKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIE 313
L + + S + R L + + SI+ +++ID G
Sbjct: 215 LVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDS----IGS-----------------S 253
Query: 314 KKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHI 373
+ E GG + + T+ LLN +DG + + ++ TN +D LDPAL+R GR+D+ I
Sbjct: 254 RIESGSGGDSEVQRTMLELLNQLDGFEATKNIK--VIMATNRIDILDPALLRPGRIDRKI 311
Query: 374 E 374
E
Sbjct: 312 E 312
>sp|O57940|PAN_PYRHO Proteasome-activating nucleotidase OS=Pyrococcus horikoshii (strain
ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=pan PE=3 SV=1
Length = 399
Score = 65.5 bits (158), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 84/189 (44%), Gaps = 41/189 (21%)
Query: 202 FEHPATFDTLAMETKKKEEIKKDLKKGYLLYGPPGTGKSTMIAAMANFLN---YDVYDLE 258
+HP F EE+ D KG LLYGPPG GK+ M A+A+ +N V E
Sbjct: 160 LKHPELF----------EEVGIDPPKGVLLYGPPGCGKTLMAKALAHEVNATFIRVVGSE 209
Query: 259 LTT--VQDNSELRSLLIDTS---SKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIE 313
L + + + L L + + + +I+ I++ID K DE
Sbjct: 210 LVRKYIGEGARLVHELFELAKEKAPTIIFIDEIDAI--------GAKRMDETT------- 254
Query: 314 KKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHI 373
GG ++ TL LL +DG + G ++I TN D LDPAL+R GR D+ I
Sbjct: 255 ------GGEREVNRTLMQLLAEMDG-FDPRGNVKVIA-ATNRPDILDPALLRPGRFDRLI 306
Query: 374 EMSYCCFEA 382
E+ FE
Sbjct: 307 EVPLPDFEG 315
>sp|Q90732|PRS4_CHICK 26S protease regulatory subunit 4 OS=Gallus gallus GN=PSMC1 PE=2
SV=1
Length = 440
Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 83/164 (50%), Gaps = 31/164 (18%)
Query: 219 EEIKKDLKKGYLLYGPPGTGKSTMIAAMAN-----FLNYDVYDLELTTVQDNSEL-RSL- 271
EE+ KG +LYGPPGTGK+ + A+AN FL +L + D +L R L
Sbjct: 212 EEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELF 271
Query: 272 -LIDTSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLS 330
+ + SI+ I++ID G + + + GG ++ + T+
Sbjct: 272 RVAEEHGPSIVFIDEIDA----IGTK-----------------RYDSNSGGEREIQRTML 310
Query: 331 GLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIE 374
LLN +DG + + G+ ++I TN ++ LDPALIR GR+D+ IE
Sbjct: 311 ELLNQLDG-FDSRGDVKVI-MATNRIETLDPALIRPGRIDRKIE 352
>sp|Q9V287|PAN_PYRAB Proteasome-activating nucleotidase OS=Pyrococcus abyssi (strain GE5
/ Orsay) GN=pan PE=3 SV=2
Length = 396
Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 84/189 (44%), Gaps = 41/189 (21%)
Query: 202 FEHPATFDTLAMETKKKEEIKKDLKKGYLLYGPPGTGKSTMIAAMANFLN---YDVYDLE 258
+HP F EE+ D KG LLYGPPG GK+ M A+A+ +N V E
Sbjct: 157 LKHPELF----------EEVGIDPPKGVLLYGPPGCGKTLMAKALAHEVNATFIRVVGSE 206
Query: 259 LTT--VQDNSELRSLLIDTS---SKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIE 313
L + + + L L + + + +I+ I++ID K DE
Sbjct: 207 LVRKYIGEGARLVHELFELAKEKAPTIIFIDEIDAI--------GAKRMDETT------- 251
Query: 314 KKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHI 373
GG ++ TL LL +DG + G ++I TN D LDPAL+R GR D+ I
Sbjct: 252 ------GGEREVNRTLMQLLAEMDG-FDPRGNVKVIA-ATNRPDILDPALLRPGRFDRLI 303
Query: 374 EMSYCCFEA 382
E+ FE
Sbjct: 304 EVPLPDFEG 312
>sp|B6YXR2|PAN_THEON Proteasome-activating nucleotidase OS=Thermococcus onnurineus
(strain NA1) GN=pan PE=3 SV=1
Length = 398
Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 86/189 (45%), Gaps = 41/189 (21%)
Query: 202 FEHPATFDTLAMETKKKEEIKKDLKKGYLLYGPPGTGKSTMIAAMANFLN---YDVYDLE 258
+HP F+ + +E K G LLYGPPG GK+ M A+A+ +N V E
Sbjct: 159 LKHPELFEKVGIEPPK----------GVLLYGPPGCGKTLMAKALAHEVNATFIRVVGSE 208
Query: 259 LTT--VQDNSELRSLLIDTS---SKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIE 313
L + + + L L + + + +I+ I++ID K DE
Sbjct: 209 LVRKFIGEGARLVHELFELAKEKAPAIIFIDEIDAI--------GAKRMDETT------- 253
Query: 314 KKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHI 373
GG ++ TL LL +DG + SG +II TN D LDPAL+R GR D+ I
Sbjct: 254 ------GGEREVNRTLMQLLAEMDG-FDPSGNVKIIA-ATNRPDILDPALLRPGRFDRLI 305
Query: 374 EMSYCCFEA 382
E+ F++
Sbjct: 306 EVPLPNFKS 314
>sp|B3R057|FTSH1_PHYMT ATP-dependent zinc metalloprotease FtsH 1 OS=Phytoplasma mali
(strain AT) GN=ftsH1 PE=3 SV=1
Length = 600
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 92/200 (46%), Gaps = 38/200 (19%)
Query: 214 ETKKKEEIKKDLKKGYLLYGPPGTGKSTMIAAMANFLNYDVYD------LELTTVQDNSE 267
+ +K E I + KG LL GPPGTGK+ + A+A + Y +E+ S
Sbjct: 196 QPQKYETIGAAIPKGVLLEGPPGTGKTLLAKALAGEASVPFYAVSGSEFVEMYVGVGASR 255
Query: 268 LRSLLIDT--SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKS 325
+R+L + ++ +L I++ID L G+R GG+++
Sbjct: 256 VRTLFKEAKLNAPCVLFIDEIDV---LGGKR------------------GGNSSGGNQEK 294
Query: 326 KVTLSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCF----E 381
TL+ LL +DG A G I++ TN D LD AL+R GR D+ I ++ E
Sbjct: 295 DQTLNQLLTEMDGFTQAKG--IIVIGATNRADMLDAALLRPGRFDRKILVNLPDIKSRAE 352
Query: 382 AFKVLAKN---YLDIDSHEL 398
K+ A+N DID H+L
Sbjct: 353 ILKLHAQNKKLSSDIDFHQL 372
>sp|Q01939|PRS8_YEAST 26S protease regulatory subunit 8 homolog OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPT6 PE=1
SV=4
Length = 405
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 86/181 (47%), Gaps = 41/181 (22%)
Query: 202 FEHPATFDTLAMETKKKEEIKKDLKKGYLLYGPPGTGKSTMIAAMAN-----FLNYDVYD 256
+HP F++L + K G +LYGPPGTGK+ + A+A+ F+ +
Sbjct: 168 VKHPELFESLGIAQPK----------GVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAE 217
Query: 257 LELTTVQDNSEL-RSLLIDTS--SKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIE 313
L + + S + R L + + SI+ +++ID S+ T
Sbjct: 218 LVQKYIGEGSRMVRELFVMAREHAPSIIFMDEID-SIGST-------------------- 256
Query: 314 KKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHI 373
+ E GG + + T+ LLN +DG ++ + I+ TN +D LDPAL+R GR+D+ I
Sbjct: 257 RVEGSGGGDSEVQRTMLELLNQLDGFETSKNIK--IIMATNRLDILDPALLRPGRIDRKI 314
Query: 374 E 374
E
Sbjct: 315 E 315
>sp|O23894|PRS6A_BRACM 26S protease regulatory subunit 6A homolog OS=Brassica campestris
GN=TBP1 PE=2 SV=1
Length = 424
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 77/165 (46%), Gaps = 33/165 (20%)
Query: 227 KGYLLYGPPGTGKSTMIAAMA-----NFLNYDVYDLELTTVQDNSELRS---LLIDTSSK 278
KG LLYGPPGTGK+ M A A FL L + D ++L L +
Sbjct: 206 KGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKAP 265
Query: 279 SILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDG 338
I+ I++ID G + + + E G ++ + T+ LLN +DG
Sbjct: 266 CIIFIDEIDA----IGTK-----------------RFDSEVSGDREVQRTMLELLNQLDG 304
Query: 339 LWSASGEERI-IVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEA 382
S +ERI ++ TN D LDPAL+R GR+D+ IE + EA
Sbjct: 305 F---SSDERIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEA 346
>sp|C5A6P8|PAN_THEGJ Proteasome-activating nucleotidase OS=Thermococcus gammatolerans
(strain DSM 15229 / JCM 11827 / EJ3) GN=pan PE=3 SV=1
Length = 397
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 83/189 (43%), Gaps = 41/189 (21%)
Query: 202 FEHPATFDTLAMETKKKEEIKKDLKKGYLLYGPPGTGKSTMIAAMANFLN---YDVYDLE 258
+HP F+ + +E K G LLYGPPG GK+ M A+AN +N V E
Sbjct: 158 LKHPELFEKVGIEPPK----------GVLLYGPPGCGKTLMAKAVANHVNATFIRVVGSE 207
Query: 259 LTT--VQDNSELRSLLIDTS---SKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIE 313
L + + + L L + + + +I+ I++ID K DE
Sbjct: 208 LVRKFIGEGARLVHELFEMAKEKAPTIIFIDEIDAI--------GAKRMDETT------- 252
Query: 314 KKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHI 373
GG ++ TL LL +DG + G ++I TN D LDPAL+R GR D+ I
Sbjct: 253 ------GGEREVNRTLMQLLAEMDG-FDPRGNVKVIA-ATNRPDILDPALLRPGRFDRLI 304
Query: 374 EMSYCCFEA 382
E+ F
Sbjct: 305 EVPLPDFRG 313
>sp|Q9SEI2|PS6AA_ARATH 26S protease regulatory subunit 6A homolog A OS=Arabidopsis
thaliana GN=RPT5A PE=2 SV=1
Length = 424
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 77/165 (46%), Gaps = 33/165 (20%)
Query: 227 KGYLLYGPPGTGKSTMIAAMA-----NFLNYDVYDLELTTVQDNSELRS---LLIDTSSK 278
KG LLYGPPGTGK+ M A A FL L + D ++L L +
Sbjct: 206 KGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKAP 265
Query: 279 SILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDG 338
I+ I++ID G + + + E G ++ + T+ LLN +DG
Sbjct: 266 CIIFIDEIDA----IGTK-----------------RFDSEVSGDREVQRTMLELLNQLDG 304
Query: 339 LWSASGEERI-IVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEA 382
S +ERI ++ TN D LDPAL+R GR+D+ IE + EA
Sbjct: 305 F---SSDERIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEA 346
>sp|Q07590|SAV_SULAC Protein SAV OS=Sulfolobus acidocaldarius (strain ATCC 33909 / DSM
639 / JCM 8929 / NBRC 15157 / NCIMB 11770) GN=sav PE=3
SV=2
Length = 780
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 83/188 (44%), Gaps = 56/188 (29%)
Query: 202 FEHPATFDTLAMETKKKEEIKKDLKKGYLLYGPPGTGKSTMIAAMAN-----FLNYDVYD 256
HP F L + D KG LLYGPPGTGK+ + A+AN F+ + +
Sbjct: 232 MRHPELFQRLGI----------DPPKGILLYGPPGTGKTLLARALANEIGAYFITVNGPE 281
Query: 257 LELTTVQDNSELRSLLI----DTSSKSILVIEDIDCSL----DLTGQREKKKEKDEDKEE 308
+ ++ SE R I + ++ SI+ I++ID D+TG+ EK+
Sbjct: 282 I-MSKFYGESEQRIREIFKEAEENAPSIIFIDEIDAIAPKREDVTGEVEKR--------- 331
Query: 309 KNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERIIVF-TTNYVDKLDPALIRRG 367
++ LL +DG+ G R+IV TN D +DPAL R G
Sbjct: 332 -------------------VVAQLLTLMDGI---KGRGRVIVIGATNRPDAIDPALRRPG 369
Query: 368 RMDKHIEM 375
R D+ IE+
Sbjct: 370 RFDREIEI 377
Score = 47.0 bits (110), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 80/175 (45%), Gaps = 37/175 (21%)
Query: 227 KGYLLYGPPGTGKSTMIAAMA-----NFLNYDVYDLELTTVQDNSE-LRSLL--IDTSSK 278
KG LL+GPPGTGK+ + A+A NF+ ++ V ++ + +R + ++
Sbjct: 522 KGILLFGPPGTGKTMLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAP 581
Query: 279 SILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDG 338
+++ ++ID PI + G +++ ++ LL +DG
Sbjct: 582 TVIFFDEIDSI--------------------APIRGLSTDSGVTER---IVNQLLAEMDG 618
Query: 339 LWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMS----YCCFEAFKVLAKN 389
+ + + +I+ TN D LDPAL+R GR D+ I + FE KV KN
Sbjct: 619 IVPLN--KVVIIAATNRPDILDPALLRPGRFDRLIYVPPPDKTARFEILKVHTKN 671
>sp|Q8U4H3|PAN_PYRFU Proteasome-activating nucleotidase OS=Pyrococcus furiosus (strain
ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=pan PE=3 SV=1
Length = 396
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 84/189 (44%), Gaps = 41/189 (21%)
Query: 202 FEHPATFDTLAMETKKKEEIKKDLKKGYLLYGPPGTGKSTMIAAMANFLN---YDVYDLE 258
+HP F EE+ D KG LLYGPPG GK+ M A+A+ +N V E
Sbjct: 157 LKHPELF----------EEVGIDPPKGVLLYGPPGCGKTLMAKAIAHEVNATFIRVVGSE 206
Query: 259 LTT--VQDNSELRSLLIDTS---SKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIE 313
L + + + L L + + + +I+ I++ID K DE
Sbjct: 207 LVRKYIGEGARLVHELFELAKEKAPTIIFIDEIDAI--------GAKRLDETT------- 251
Query: 314 KKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHI 373
GG ++ TL LL +DG + G ++I TN D LDPAL+R GR D+ I
Sbjct: 252 ------GGEREVNRTLMQLLAEMDG-FDPRGNVKVIA-ATNRPDILDPALLRPGRFDRLI 303
Query: 374 EMSYCCFEA 382
E+ FE
Sbjct: 304 EVPLPDFEG 312
>sp|Q8SQK0|PRS8_ENCCU 26S protease regulatory subunit 8 homolog OS=Encephalitozoon
cuniculi (strain GB-M1) GN=RPT6 PE=1 SV=1
Length = 453
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 81/181 (44%), Gaps = 41/181 (22%)
Query: 202 FEHPATFDTLAMETKKKEEIKKDLKKGYLLYGPPGTGKSTMIAAMAN-----FLNYDVYD 256
+HP F+ L + K G LLYGPPGTGK+ + A+A+ F+ +
Sbjct: 216 IKHPELFENLGIAQPK----------GVLLYGPPGTGKTLLARAVAHHTQCKFIRVSGSE 265
Query: 257 LELTTVQDNSEL-RSLLIDTS--SKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIE 313
L + + S L R L I + SI+ +++ID G K D E +
Sbjct: 266 LVQKYIGEGSRLVRELFIMAREHAPSIIFMDEIDS----IGSTRGDSNKGSDSEVQR--- 318
Query: 314 KKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHI 373
T+ LLN +DG S + + ++ TN +D LDPAL+R GR+D+ I
Sbjct: 319 --------------TMLELLNQLDGFESHNNIK--VIMATNRIDILDPALLRTGRIDRKI 362
Query: 374 E 374
E
Sbjct: 363 E 363
>sp|Q55BV5|PRS4_DICDI 26S protease regulatory subunit 4 homolog OS=Dictyostelium
discoideum GN=psmC1 PE=1 SV=1
Length = 439
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 83/164 (50%), Gaps = 31/164 (18%)
Query: 219 EEIKKDLKKGYLLYGPPGTGKSTMIAAMAN-----FLNYDVYDLELTTVQDNSEL-RSL- 271
EEI KG +LYG PGTGK+ + A+AN FL +L + D +L R L
Sbjct: 211 EEIGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELF 270
Query: 272 -LIDTSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLS 330
+ D + SI+ I++ID G + + + + GG ++ + T+
Sbjct: 271 RVADECAPSIVFIDEIDA----VGTK-----------------RYDSQSGGEREIQRTML 309
Query: 331 GLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIE 374
LLN +DG + A + ++I TN ++ LDPALIR GR+D+ IE
Sbjct: 310 ELLNQLDG-FDARTDVKVI-MATNRIETLDPALIRPGRIDRKIE 351
>sp|B0K5A3|FTSH1_THEPX ATP-dependent zinc metalloprotease FtsH 1 OS=Thermoanaerobacter sp.
(strain X514) GN=ftsH1 PE=3 SV=1
Length = 611
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 75/256 (29%), Positives = 110/256 (42%), Gaps = 38/256 (14%)
Query: 216 KKKEEIKKDLKKGYLLYGPPGTGKSTMIAAMAN-----FLNYDVYD-LELTTVQDNSELR 269
KK E+ + KG LL GPPGTGK+ + A+A F + D +E+ + +R
Sbjct: 184 KKFLELGARIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGAARVR 243
Query: 270 SLLIDTSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTL 329
L D + K+ I ID +D G+ ++ GG + + TL
Sbjct: 244 DLF-DQAKKNAPCIVFID-EIDAVGR-----------------QRGAGLGGGHDEREQTL 284
Query: 330 SGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCF----EAFKV 385
+ LL +DG + E I++ TN D LDPAL+R GR D+HI + E K+
Sbjct: 285 NQLLVEMDGF--SVNEGIIVIAATNRPDILDPALLRPGRFDRHITVGIPDIKGREEILKI 342
Query: 386 LAKNYLDIDSHELYAVIESMPAETNMTPADVAENLMPKCDEDDTETCLKNLIEALKAAKE 445
++N L + P T AD+ ENLM +E + L + A E
Sbjct: 343 HSRNKPLAPDVSLQVLARRTPG---FTGADL-ENLM---NEAALLAARRGLKQITMAELE 395
Query: 446 EAIKKTEEEARKFSRI 461
EAI + K SRI
Sbjct: 396 EAITRVIAGPEKRSRI 411
>sp|P54776|PRS6A_SOLLC 26S protease regulatory subunit 6A homolog OS=Solanum lycopersicum
GN=TBP1 PE=2 SV=1
Length = 423
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 77/165 (46%), Gaps = 33/165 (20%)
Query: 227 KGYLLYGPPGTGKSTMIAAMA-----NFLNYDVYDLELTTVQDNSELRS---LLIDTSSK 278
KG LLYGPPGTGK+ M A A FL L + D ++L L S
Sbjct: 205 KGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSP 264
Query: 279 SILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDG 338
I+ I++ID G + + + E G ++ + T+ LLN +DG
Sbjct: 265 CIIFIDEIDA----IGTK-----------------RFDSEVSGDREVQRTMLELLNQLDG 303
Query: 339 LWSASGEERI-IVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEA 382
S ++RI ++ TN D LDPAL+R GR+D+ IE + EA
Sbjct: 304 F---SSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEA 345
>sp|Q975U2|PAN_SULTO Proteasome-activating nucleotidase OS=Sulfolobus tokodaii (strain
DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=pan PE=3
SV=2
Length = 392
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 89/199 (44%), Gaps = 38/199 (19%)
Query: 220 EIKKDLKKGYLLYGPPGTGKSTMIAAMAN-----FLNYDVYDLELTTVQDNSELRSLLID 274
EI D KG LLYGPPGTGK+ + A+A F+ + V + + + + +
Sbjct: 162 EIGIDPPKGVLLYGPPGTGKTLLAKAVATESNATFIQVVASEFAQKFVGEGARIVREVFE 221
Query: 275 TSSK---SILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDG--GSKKSKVTL 329
+ + SI+ I++ID I K + G G ++ + TL
Sbjct: 222 LARRKAPSIVFIDEIDA-----------------------IGAKRVDMGTSGEREIQRTL 258
Query: 330 SGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKN 389
LL IDG + I+ TN +D LDPAL+R GR D+ IE+ FE K + +
Sbjct: 259 MQLLAEIDGFKPLDNVK--IIAATNRLDILDPALLRPGRFDRLIEVPLPNFEGRKEIFRI 316
Query: 390 YLD---IDSHELYAVIESM 405
YL D + Y ++ SM
Sbjct: 317 YLQKMKTDGNIRYDILASM 335
>sp|Q8TX03|PAN_METKA Proteasome-activating nucleotidase OS=Methanopyrus kandleri (strain
AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=pan PE=3
SV=1
Length = 436
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 111/249 (44%), Gaps = 44/249 (17%)
Query: 227 KGYLLYGPPGTGKSTMIAAMAN-----FLNYDVYDLELTTVQDNSEL-RSL--LIDTSSK 278
KG LLYGPPGTGK+ + A+AN F+ +L + + + L R L L +
Sbjct: 214 KGVLLYGPPGTGKTLLAKAVANHADATFIRLAAPELVQKFIGEGARLVRELFELAREKAP 273
Query: 279 SILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDG 338
SI+ I++ID G R + G ++ + TL+ LL +DG
Sbjct: 274 SIIFIDEIDA----IGARRMRDAT-----------------SGDREVQRTLTQLLAEMDG 312
Query: 339 LWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSY----CCFEAFKVLAKNY---L 391
++ ++ TN D LDPAL+R GR D+HI++ +E FK+ ++
Sbjct: 313 FDPL--DDIKVIAATNRKDILDPALLRPGRFDRHIKIPLPDEEGRYEIFKIHTRDMNLAE 370
Query: 392 DIDSHELYAVIESMPAETNMTPADVAENLMPKCDEDDTETCLKNLIEALKAAKEEAIKKT 451
D+D +L + E A A E M ED + + ++A+ + + K
Sbjct: 371 DVDLQKLAKITEG--ASGADIKAICTEAGMMAIREDRDIVTMDDFLKAV----DRVMGKK 424
Query: 452 EEEARKFSR 460
EEE+ +F R
Sbjct: 425 EEESGEFKR 433
>sp|Q5JHS5|PAN_PYRKO Proteasome-activating nucleotidase OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=pan PE=3
SV=1
Length = 397
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 84/189 (44%), Gaps = 41/189 (21%)
Query: 202 FEHPATFDTLAMETKKKEEIKKDLKKGYLLYGPPGTGKSTMIAAMANFLN---YDVYDLE 258
+HP F+ + +E K G LLYGPPG GK+ M A+AN +N V E
Sbjct: 158 LKHPELFEQVGIEPPK----------GVLLYGPPGCGKTLMAKAVANHVNATFIRVVGSE 207
Query: 259 LTT--VQDNSELRSLLIDTS---SKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIE 313
L + + + L L + + + +I+ I++ID K DE
Sbjct: 208 LVRKFIGEGARLVHELFELAKEKAPTIIFIDEIDAI--------GAKRMDETT------- 252
Query: 314 KKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHI 373
GG ++ TL LL +DG + G ++I TN D LDPAL+R GR D+ I
Sbjct: 253 ------GGEREVNRTLMQLLAEMDG-FDPRGNVKVIA-ATNRPDILDPALLRPGRFDRLI 304
Query: 374 EMSYCCFEA 382
E+ ++
Sbjct: 305 EVPLPDYQG 313
>sp|Q9SL67|PRS4B_ARATH 26S proteasome regulatory subunit 4 homolog B OS=Arabidopsis
thaliana GN=RPT2B PE=2 SV=1
Length = 443
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 83/164 (50%), Gaps = 31/164 (18%)
Query: 219 EEIKKDLKKGYLLYGPPGTGKSTMIAAMAN-----FLNYDVYDLELTTVQDNSEL-RSL- 271
E+I KG +LYG PGTGK+ + A+AN FL +L + D +L R L
Sbjct: 215 EDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELF 274
Query: 272 -LIDTSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLS 330
+ D S SI+ I++ID G + + + GG ++ + T+
Sbjct: 275 RVADDLSPSIVFIDEIDA----VGTK-----------------RYDANSGGEREIQRTML 313
Query: 331 GLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIE 374
LLN +DG + + G+ ++I TN ++ LDPAL+R GR+D+ IE
Sbjct: 314 ELLNQLDG-FDSRGDVKVI-LATNRIESLDPALLRPGRIDRKIE 355
>sp|Q67JH0|FTSH3_SYMTH ATP-dependent zinc metalloprotease FtsH 3 OS=Symbiobacterium
thermophilum (strain T / IAM 14863) GN=ftsH3 PE=3 SV=1
Length = 626
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 68/233 (29%), Positives = 102/233 (43%), Gaps = 49/233 (21%)
Query: 201 FFEHPATFDTLAMETKKKEEIKKDLKKGYLLYGPPGTGKSTMIAAMAN-----FLNYDVY 255
F +HP K+ E+ + KG LLYGPPGTGK+ + A+A F +
Sbjct: 175 FLKHP----------KRYLELGARIPKGVLLYGPPGTGKTLLAKAVAGEAGVPFFSISGS 224
Query: 256 D-LELTTVQDNSELRSLL--IDTSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPI 312
D +E+ S +R L +S I+ I++ID G+
Sbjct: 225 DFVEMFVGVGASRVRDLFEQAKKNSPCIVFIDEIDA----VGR----------------- 263
Query: 313 EKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKH 372
++ GG + + TL+ LL +DG ++ E II+ TN D LDPAL+R GR D+
Sbjct: 264 QRGAGYGGGHDEREQTLNQLLVEMDGF--SANEGIIIIAATNRPDVLDPALLRPGRFDRQ 321
Query: 373 IEMSYCCFEA----FKVLAKNYLDIDSHELYAVIESMPAETNMTPADVAENLM 421
I + + F+V AK +L + + P T AD+A NLM
Sbjct: 322 IVIDRPDLKGRLAIFQVHAKGKPLEPDVDLEVLAKRTP---GFTGADIA-NLM 370
>sp|Q9SZD4|PRS4A_ARATH 26S proteasome regulatory subunit 4 homolog A OS=Arabidopsis
thaliana GN=RPT2A PE=2 SV=1
Length = 443
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 83/164 (50%), Gaps = 31/164 (18%)
Query: 219 EEIKKDLKKGYLLYGPPGTGKSTMIAAMAN-----FLNYDVYDLELTTVQDNSEL-RSL- 271
E+I KG +LYG PGTGK+ + A+AN FL +L + D +L R L
Sbjct: 215 EDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELF 274
Query: 272 -LIDTSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLS 330
+ D S SI+ I++ID G + + + GG ++ + T+
Sbjct: 275 RVADDLSPSIVFIDEIDA----VGTK-----------------RYDAHSGGEREIQRTML 313
Query: 331 GLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIE 374
LLN +DG + + G+ ++I TN ++ LDPAL+R GR+D+ IE
Sbjct: 314 ELLNQLDG-FDSRGDVKVI-LATNRIESLDPALLRPGRIDRKIE 355
>sp|D1C2C6|FTSH2_SPHTD ATP-dependent zinc metalloprotease FtsH 2 OS=Sphaerobacter
thermophilus (strain DSM 20745 / S 6022) GN=ftsH2 PE=3
SV=1
Length = 652
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 79/301 (26%), Positives = 127/301 (42%), Gaps = 78/301 (25%)
Query: 203 EHPATFDTLAMETKKKEEIK------KD----------LKKGYLLYGPPGTGKSTMIAAM 246
E TFD +A + KEE+ +D + +G LL GPPGTGK+ + A+
Sbjct: 154 ERVITFDDVAGAEEVKEEVADIVDYLRDPERFRRLGARIPRGVLLTGPPGTGKTLLTRAL 213
Query: 247 ANFLNYDVYDL------ELTTVQDNSELRSLL--IDTSSKSILVIEDIDCSLDLTGQREK 298
A + + EL S +R L ++ +I+ I++ID G+ E+
Sbjct: 214 AGEARASFFSVSGSEFVELYVGVGASRVRELFRKAKENAPAIIFIDEIDAIGRRRGRMEQ 273
Query: 299 KKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEER---IIVFTTNY 355
E D+ TL+ +L +DG EER ++V TN
Sbjct: 274 SSEYDQ-----------------------TLNQILVEMDGF-----EERTTVVVVAATNR 305
Query: 356 VDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYL-------DIDSHELYAVIESMPAE 408
VD LDPAL+R GR D+ + + +A + + + + +++ EL A
Sbjct: 306 VDILDPALLRPGRFDRKVVVDLPDRKARRAILEVHARGKPLAENVNLDELAA------RT 359
Query: 409 TNMTPADVAE-----NLMPKCDEDDTETCLKNLIEALKAAKEEAIKKTEEEARKFSRIEN 463
T MT AD+A ++ D +T T ++L+EAL + + AR+FS E
Sbjct: 360 TGMTGADLANVINEAAILAARDRRETITN-QDLLEAL----DRTLAGPARNARRFSERER 414
Query: 464 R 464
R
Sbjct: 415 R 415
>sp|Q2SF13|FTSH_HAHCH ATP-dependent zinc metalloprotease FtsH OS=Hahella chejuensis
(strain KCTC 2396) GN=ftsH PE=3 SV=1
Length = 619
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 111/266 (41%), Gaps = 67/266 (25%)
Query: 207 TFDTLAMETKKKEEIKKDLK----------------KGYLLYGPPGTGKSTMIAAMANFL 250
TFD +A +T K E+++ ++ +G LL GPPGTGK+ + A+A
Sbjct: 174 TFDEVAGQTNAKREVQELVEYLRDPDRFHRVGALAPRGVLLMGPPGTGKTLLARALAGEA 233
Query: 251 NYDVYDL------ELTTVQDNSELRSL--LIDTSSKSILVIEDIDCSLDLTGQREKKKEK 302
+ Y + E+ S +R L + +S SI+ I+++D G+
Sbjct: 234 GVNFYPMSASEFIEVFVGVGASRVRQLFKIAKENSPSIIFIDELDS----VGR------- 282
Query: 303 DEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERIIVFT-TNYVDKLDP 361
+ GG + + TL+ +L +DG +G + +IV TN D LDP
Sbjct: 283 ----------TRGAGYGGGHDEREQTLNQILAEMDGF---AGHDAVIVLAATNRPDVLDP 329
Query: 362 ALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDIDSHELYAVIESMPAETNMTPADVAENLM 421
AL+R GR D+H+ LD+ E I + A DV N +
Sbjct: 330 ALMRPGRFDRHVT----------------LDLPDQEGRVAILKVHARHIPLADDVNLNQV 373
Query: 422 PKCDEDDTETCLKNLIE--ALKAAKE 445
+ LKNLI A++AA+E
Sbjct: 374 AAGTPGFSGADLKNLINEAAIQAARE 399
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.131 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 186,282,927
Number of Sequences: 539616
Number of extensions: 7985620
Number of successful extensions: 60985
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1130
Number of HSP's successfully gapped in prelim test: 521
Number of HSP's that attempted gapping in prelim test: 56352
Number of HSP's gapped (non-prelim): 3978
length of query: 504
length of database: 191,569,459
effective HSP length: 122
effective length of query: 382
effective length of database: 125,736,307
effective search space: 48031269274
effective search space used: 48031269274
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)