Query 037859
Match_columns 504
No_of_seqs 473 out of 3125
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 05:04:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037859.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037859hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0743 AAA+-type ATPase [Post 100.0 1.4E-90 3.1E-95 701.1 36.1 426 6-454 2-445 (457)
2 COG1222 RPT1 ATP-dependent 26S 100.0 7.2E-41 1.6E-45 329.3 9.2 218 171-421 140-366 (406)
3 KOG0730 AAA+-type ATPase [Post 100.0 3.3E-37 7.2E-42 323.2 11.7 206 181-422 425-647 (693)
4 KOG0734 AAA+-type ATPase conta 100.0 2.2E-35 4.8E-40 301.2 14.6 190 206-421 301-515 (752)
5 KOG0733 Nuclear AAA ATPase (VC 100.0 3.6E-35 7.8E-40 303.8 13.2 208 178-421 499-727 (802)
6 KOG0733 Nuclear AAA ATPase (VC 100.0 1.6E-33 3.5E-38 291.6 12.9 186 202-421 209-405 (802)
7 KOG0736 Peroxisome assembly fa 100.0 3.6E-32 7.8E-37 287.8 17.0 205 207-446 670-902 (953)
8 KOG0728 26S proteasome regulat 100.0 3.7E-32 8.1E-37 255.4 15.0 206 198-447 163-376 (404)
9 KOG0731 AAA+-type ATPase conta 100.0 6.6E-32 1.4E-36 291.4 16.2 196 205-422 307-528 (774)
10 KOG0727 26S proteasome regulat 100.0 1.5E-32 3.3E-37 258.2 9.2 222 179-445 152-382 (408)
11 KOG0726 26S proteasome regulat 100.0 1.8E-32 4E-37 262.2 6.4 204 198-446 201-413 (440)
12 KOG0652 26S proteasome regulat 100.0 2.7E-31 5.9E-36 250.8 8.4 222 167-421 156-386 (424)
13 COG0465 HflB ATP-dependent Zn 100.0 3E-30 6.4E-35 274.4 13.9 195 204-421 145-364 (596)
14 CHL00195 ycf46 Ycf46; Provisio 100.0 6.7E-30 1.5E-34 271.0 13.9 220 205-451 224-471 (489)
15 KOG0729 26S proteasome regulat 100.0 2.7E-30 5.9E-35 244.7 9.4 208 197-451 192-410 (435)
16 KOG0735 AAA+-type ATPase [Post 100.0 2.5E-29 5.4E-34 264.1 15.0 170 226-421 701-879 (952)
17 KOG0738 AAA+-type ATPase [Post 100.0 2.2E-29 4.7E-34 249.7 13.6 189 208-421 211-426 (491)
18 COG1223 Predicted ATPase (AAA+ 100.0 2E-29 4.2E-34 238.3 12.5 190 205-421 117-328 (368)
19 PTZ00454 26S protease regulato 100.0 4.7E-29 1E-33 259.3 15.0 190 199-421 162-360 (398)
20 TIGR01241 FtsH_fam ATP-depende 100.0 1.8E-28 3.8E-33 263.9 14.7 217 204-443 50-295 (495)
21 TIGR01243 CDC48 AAA family ATP 100.0 3E-28 6.5E-33 273.5 14.3 190 207-421 451-666 (733)
22 PRK03992 proteasome-activating 100.0 6.1E-28 1.3E-32 251.7 14.7 173 226-421 165-346 (389)
23 CHL00206 ycf2 Ycf2; Provisiona 100.0 3.4E-28 7.3E-33 278.7 12.9 167 226-422 1630-1852(2281)
24 TIGR03689 pup_AAA proteasome A 99.9 1.6E-27 3.4E-32 252.7 15.9 186 206-420 179-403 (512)
25 PLN00020 ribulose bisphosphate 99.9 4E-27 8.6E-32 236.0 17.0 157 226-408 148-327 (413)
26 CHL00176 ftsH cell division pr 99.9 1.9E-27 4E-32 259.8 15.3 218 203-443 177-423 (638)
27 PTZ00361 26 proteosome regulat 99.9 8.9E-28 1.9E-32 251.4 12.1 189 199-420 200-397 (438)
28 KOG0651 26S proteasome regulat 99.9 3E-27 6.4E-32 228.7 12.2 216 197-447 147-377 (388)
29 KOG0739 AAA+-type ATPase [Post 99.9 2.2E-27 4.7E-32 228.2 9.6 182 209-417 133-340 (439)
30 COG0464 SpoVK ATPases of the A 99.9 5.8E-27 1.3E-31 252.5 13.3 170 226-421 276-456 (494)
31 KOG0737 AAA+-type ATPase [Post 99.9 1.6E-26 3.4E-31 229.4 12.6 188 199-421 109-305 (386)
32 PRK10733 hflB ATP-dependent me 99.9 4.4E-26 9.6E-31 251.3 14.2 195 205-422 148-367 (644)
33 TIGR01242 26Sp45 26S proteasom 99.9 3.3E-25 7.1E-30 229.8 13.5 173 226-421 156-337 (364)
34 KOG0741 AAA+-type ATPase [Post 99.9 3.9E-26 8.4E-31 233.5 4.1 191 208-422 238-450 (744)
35 KOG0730 AAA+-type ATPase [Post 99.9 1.2E-24 2.7E-29 228.9 11.8 186 199-422 201-396 (693)
36 KOG0732 AAA+-type ATPase conta 99.9 3.8E-24 8.2E-29 236.9 11.0 170 226-421 299-483 (1080)
37 KOG0740 AAA+-type ATPase [Post 99.9 7.1E-23 1.5E-27 210.2 11.3 185 201-422 172-366 (428)
38 TIGR01243 CDC48 AAA family ATP 99.9 1.9E-22 4.1E-27 226.7 14.4 189 206-420 175-389 (733)
39 PF14363 AAA_assoc: Domain ass 99.8 3E-20 6.5E-25 155.9 11.4 96 28-125 1-97 (98)
40 KOG0742 AAA+-type ATPase [Post 99.8 2.4E-20 5.2E-25 186.3 12.1 206 150-392 298-529 (630)
41 PF00004 AAA: ATPase family as 99.8 2.9E-20 6.3E-25 163.7 10.5 123 229-377 1-132 (132)
42 PF05496 RuvB_N: Holliday junc 99.8 2.7E-18 5.8E-23 162.4 15.7 155 202-393 17-194 (233)
43 KOG0744 AAA+-type ATPase [Post 99.8 8.6E-19 1.9E-23 171.0 11.4 160 208-391 141-340 (423)
44 KOG2004 Mitochondrial ATP-depe 99.8 2.4E-17 5.2E-22 174.8 17.9 146 213-392 415-597 (906)
45 PRK00080 ruvB Holliday junctio 99.7 2.8E-17 6.1E-22 168.2 14.5 154 204-394 20-196 (328)
46 COG0466 Lon ATP-dependent Lon 99.7 2.4E-16 5.3E-21 168.1 19.0 146 213-392 327-509 (782)
47 TIGR00635 ruvB Holliday juncti 99.7 1.5E-16 3.2E-21 161.2 13.3 149 207-392 2-173 (305)
48 TIGR00763 lon ATP-dependent pr 99.7 5.7E-16 1.2E-20 175.0 18.1 148 211-392 322-506 (775)
49 PRK12323 DNA polymerase III su 99.7 4.2E-16 9E-21 167.6 15.5 150 203-394 10-199 (700)
50 PRK07003 DNA polymerase III su 99.7 1.2E-15 2.5E-20 166.1 17.4 148 204-393 11-193 (830)
51 PRK14956 DNA polymerase III su 99.7 4.8E-16 1E-20 163.3 14.0 148 203-392 12-194 (484)
52 PRK14962 DNA polymerase III su 99.7 6.7E-16 1.4E-20 164.2 14.9 147 203-391 8-189 (472)
53 TIGR02881 spore_V_K stage V sp 99.7 7.2E-16 1.6E-20 152.8 13.4 152 208-393 5-193 (261)
54 PRK14960 DNA polymerase III su 99.7 7.9E-16 1.7E-20 165.8 13.7 148 204-393 10-192 (702)
55 COG2255 RuvB Holliday junction 99.6 1.4E-15 3E-20 146.8 12.2 153 202-391 19-194 (332)
56 PRK14961 DNA polymerase III su 99.6 6.1E-15 1.3E-19 153.0 17.2 148 204-393 11-193 (363)
57 TIGR02639 ClpA ATP-dependent C 99.6 6.4E-16 1.4E-20 173.7 10.2 154 204-392 177-359 (731)
58 CHL00181 cbbX CbbX; Provisiona 99.6 1.8E-15 3.9E-20 151.6 11.8 152 209-393 23-211 (287)
59 PRK06645 DNA polymerase III su 99.6 4.2E-15 9.2E-20 158.8 14.9 149 203-393 15-202 (507)
60 PRK14958 DNA polymerase III su 99.6 2.8E-15 6E-20 161.1 13.2 147 204-392 11-192 (509)
61 PRK14964 DNA polymerase III su 99.6 4.8E-15 1.1E-19 157.2 14.1 148 204-393 8-190 (491)
62 COG2256 MGS1 ATPase related to 99.6 3.7E-15 8.1E-20 150.2 12.1 143 204-391 19-176 (436)
63 PRK07764 DNA polymerase III su 99.6 2.8E-14 6.1E-19 160.2 20.2 148 203-392 9-193 (824)
64 PRK14949 DNA polymerase III su 99.6 7.1E-15 1.5E-19 162.7 15.1 147 204-392 11-192 (944)
65 PRK07994 DNA polymerase III su 99.6 6.3E-15 1.4E-19 160.7 14.5 146 204-391 11-191 (647)
66 TIGR02880 cbbX_cfxQ probable R 99.6 4.4E-15 9.5E-20 148.8 12.0 151 210-393 23-210 (284)
67 PRK04195 replication factor C 99.6 1.2E-14 2.6E-19 156.3 15.0 150 203-392 8-174 (482)
68 PRK08691 DNA polymerase III su 99.6 7.4E-15 1.6E-19 159.6 13.1 148 204-393 11-193 (709)
69 TIGR03345 VI_ClpV1 type VI sec 99.6 5.2E-15 1.1E-19 167.8 12.4 152 204-391 182-363 (852)
70 PRK10865 protein disaggregatio 99.6 3.9E-15 8.5E-20 169.2 11.3 153 204-392 173-355 (857)
71 PRK05563 DNA polymerase III su 99.6 1.7E-14 3.8E-19 156.8 15.3 147 204-392 11-192 (559)
72 PHA02544 44 clamp loader, smal 99.6 1.5E-14 3.3E-19 147.2 13.9 147 202-390 14-172 (316)
73 PLN03025 replication factor C 99.6 1.6E-14 3.5E-19 147.3 13.4 148 203-392 7-172 (319)
74 PRK14952 DNA polymerase III su 99.6 2.1E-14 4.5E-19 155.7 15.0 147 204-392 8-191 (584)
75 TIGR02397 dnaX_nterm DNA polym 99.6 4.2E-14 9.1E-19 146.1 16.5 148 204-393 9-191 (355)
76 PRK14951 DNA polymerase III su 99.6 2E-14 4.3E-19 156.5 14.7 147 204-392 11-197 (618)
77 PRK05896 DNA polymerase III su 99.6 1.5E-14 3.3E-19 155.7 13.5 146 204-391 11-191 (605)
78 PRK14963 DNA polymerase III su 99.6 2.7E-14 5.9E-19 153.1 15.4 147 204-392 9-189 (504)
79 PRK14957 DNA polymerase III su 99.6 2.4E-14 5.2E-19 154.0 14.8 146 204-391 11-191 (546)
80 PRK14969 DNA polymerase III su 99.6 1.3E-14 2.9E-19 156.7 12.9 146 204-391 11-191 (527)
81 PRK07133 DNA polymerase III su 99.6 2.3E-14 5.1E-19 157.2 14.8 147 203-391 12-190 (725)
82 PF05673 DUF815: Protein of un 99.6 4.2E-14 9.1E-19 135.7 13.8 161 197-393 15-209 (249)
83 PRK13342 recombination factor 99.6 3.4E-14 7.3E-19 149.9 14.3 145 203-392 6-165 (413)
84 PRK14959 DNA polymerase III su 99.5 4.2E-14 9.2E-19 153.1 14.1 148 203-392 10-192 (624)
85 PRK14970 DNA polymerase III su 99.5 7.7E-14 1.7E-18 145.1 15.6 147 204-392 12-181 (367)
86 PRK14965 DNA polymerase III su 99.5 2.9E-14 6.3E-19 155.8 13.0 146 204-391 11-191 (576)
87 TIGR02640 gas_vesic_GvpN gas v 99.5 8.6E-14 1.9E-18 138.0 14.3 137 219-393 12-200 (262)
88 TIGR03346 chaperone_ClpB ATP-d 99.5 2.8E-14 6.1E-19 162.7 11.4 152 204-391 168-349 (852)
89 PRK14953 DNA polymerase III su 99.5 1.1E-13 2.3E-18 148.1 14.6 149 203-393 10-193 (486)
90 KOG0989 Replication factor C, 99.5 2.8E-14 6E-19 139.2 9.1 149 201-391 28-201 (346)
91 PRK10787 DNA-binding ATP-depen 99.5 8.8E-14 1.9E-18 156.3 14.3 150 208-392 320-507 (784)
92 PRK11034 clpA ATP-dependent Cl 99.5 2.1E-14 4.6E-19 160.1 9.2 150 207-391 184-362 (758)
93 PRK06647 DNA polymerase III su 99.5 1.2E-13 2.6E-18 149.9 14.7 146 204-391 11-191 (563)
94 PRK09111 DNA polymerase III su 99.5 1.2E-13 2.7E-18 150.5 14.7 148 203-392 18-205 (598)
95 PRK08451 DNA polymerase III su 99.5 1.9E-13 4.1E-18 146.4 15.2 147 204-392 9-190 (535)
96 PRK14955 DNA polymerase III su 99.5 7.5E-14 1.6E-18 146.5 12.0 147 203-391 10-199 (397)
97 PRK06305 DNA polymerase III su 99.5 1.8E-13 3.9E-18 145.3 14.7 146 204-391 12-193 (451)
98 PRK07940 DNA polymerase III su 99.5 1.4E-13 3.1E-18 143.3 13.3 141 207-389 3-187 (394)
99 PRK14954 DNA polymerase III su 99.5 2.1E-13 4.6E-18 148.9 14.8 146 204-391 11-199 (620)
100 KOG0736 Peroxisome assembly fa 99.5 1.4E-13 3.1E-18 147.4 12.5 166 228-421 433-607 (953)
101 PRK14948 DNA polymerase III su 99.5 3.4E-13 7.3E-18 148.0 15.4 145 204-390 11-192 (620)
102 KOG0735 AAA+-type ATPase [Post 99.5 2.6E-13 5.5E-18 144.3 13.4 189 209-419 408-616 (952)
103 TIGR02902 spore_lonB ATP-depen 99.5 2.3E-13 5E-18 147.5 12.9 152 203-392 59-277 (531)
104 PRK12402 replication factor C 99.5 5E-13 1.1E-17 136.9 14.4 148 203-392 9-198 (337)
105 TIGR01650 PD_CobS cobaltochela 99.5 4.1E-13 8.8E-18 135.1 12.8 145 210-391 46-233 (327)
106 PRK11034 clpA ATP-dependent Cl 99.5 5.4E-13 1.2E-17 148.9 15.1 146 210-392 459-667 (758)
107 PRK14950 DNA polymerase III su 99.5 5.2E-13 1.1E-17 146.5 14.4 147 204-392 11-193 (585)
108 PRK06893 DNA replication initi 99.5 4.5E-13 9.7E-18 130.3 12.1 152 201-391 8-174 (229)
109 CHL00095 clpC Clp protease ATP 99.5 1.1E-13 2.3E-18 157.5 8.8 148 207-390 177-353 (821)
110 PRK14971 DNA polymerase III su 99.5 7.6E-13 1.6E-17 145.2 15.0 147 203-391 11-193 (614)
111 TIGR03420 DnaA_homol_Hda DnaA 99.4 1E-12 2.3E-17 126.9 11.2 151 201-391 7-172 (226)
112 COG2812 DnaX DNA polymerase II 99.4 1.1E-12 2.4E-17 139.1 11.9 148 204-393 11-193 (515)
113 PRK05342 clpX ATP-dependent pr 99.4 3.1E-12 6.6E-17 134.0 14.9 159 208-389 69-323 (412)
114 PF07728 AAA_5: AAA domain (dy 99.4 4.4E-13 9.5E-18 119.7 6.6 105 228-369 1-139 (139)
115 PRK13341 recombination factor 99.4 1.9E-12 4.2E-17 143.9 13.1 144 204-392 23-182 (725)
116 TIGR02639 ClpA ATP-dependent C 99.4 4.8E-12 1E-16 142.5 16.1 146 209-392 454-663 (731)
117 COG0714 MoxR-like ATPases [Gen 99.4 1.1E-11 2.3E-16 127.2 17.2 145 211-392 26-204 (329)
118 PRK00440 rfc replication facto 99.4 5.7E-12 1.2E-16 128.1 14.7 151 201-393 9-176 (319)
119 TIGR00382 clpX endopeptidase C 99.4 5.3E-12 1.1E-16 131.6 14.3 160 208-390 75-330 (413)
120 PRK13407 bchI magnesium chelat 99.4 5.4E-12 1.2E-16 128.5 14.0 152 204-392 3-217 (334)
121 PRK07471 DNA polymerase III su 99.4 2.3E-11 5E-16 125.7 18.5 148 203-392 13-214 (365)
122 KOG2028 ATPase related to the 99.4 3.1E-12 6.7E-17 127.2 10.9 143 204-390 133-293 (554)
123 cd00009 AAA The AAA+ (ATPases 99.4 6.7E-12 1.4E-16 111.0 12.1 123 217-376 6-150 (151)
124 PRK00149 dnaA chromosomal repl 99.4 2.2E-12 4.8E-17 137.7 10.6 182 201-419 114-322 (450)
125 PRK08903 DnaA regulatory inact 99.4 4.5E-12 9.8E-17 122.9 11.8 146 201-391 10-170 (227)
126 PRK05564 DNA polymerase III su 99.4 3.2E-11 6.8E-16 122.8 18.4 143 207-391 2-165 (313)
127 COG0542 clpA ATP-binding subun 99.3 1.4E-12 2.9E-17 143.3 8.2 178 207-422 168-379 (786)
128 COG0464 SpoVK ATPases of the A 99.3 4.1E-12 9E-17 137.2 11.6 182 201-420 3-193 (494)
129 TIGR00362 DnaA chromosomal rep 99.3 3.2E-12 6.9E-17 134.7 10.3 155 227-419 137-310 (405)
130 PRK08727 hypothetical protein; 99.3 1.3E-11 2.7E-16 120.4 13.3 151 201-391 11-175 (233)
131 TIGR00678 holB DNA polymerase 99.3 1.6E-11 3.5E-16 115.5 13.3 123 226-390 14-167 (188)
132 PRK09112 DNA polymerase III su 99.3 3.3E-11 7.3E-16 123.9 16.5 146 203-390 17-212 (351)
133 PHA02244 ATPase-like protein 99.3 2.3E-11 4.9E-16 123.9 14.9 116 226-380 119-263 (383)
134 TIGR02928 orc1/cdc6 family rep 99.3 1.8E-11 3.8E-16 127.1 14.4 149 209-392 15-213 (365)
135 CHL00081 chlI Mg-protoporyphyr 99.3 2.5E-11 5.3E-16 124.0 14.0 150 206-392 14-233 (350)
136 COG2607 Predicted ATPase (AAA+ 99.3 3.1E-11 6.7E-16 114.3 13.4 160 199-392 50-240 (287)
137 PRK08084 DNA replication initi 99.3 2.2E-11 4.7E-16 118.9 12.7 149 203-390 16-179 (235)
138 PRK00411 cdc6 cell division co 99.3 1.3E-10 2.8E-15 121.9 18.0 148 209-392 30-221 (394)
139 COG0542 clpA ATP-binding subun 99.3 4.1E-11 9E-16 131.8 13.9 148 208-392 490-706 (786)
140 TIGR02903 spore_lon_C ATP-depe 99.3 5.8E-11 1.3E-15 130.8 15.2 152 203-392 148-367 (615)
141 PRK14086 dnaA chromosomal repl 99.3 3.6E-11 7.7E-16 130.0 13.1 181 201-419 280-488 (617)
142 PRK10865 protein disaggregatio 99.3 1.2E-10 2.6E-15 132.9 18.0 148 208-392 567-780 (857)
143 PRK11331 5-methylcytosine-spec 99.3 4.7E-11 1E-15 124.6 12.8 44 208-251 174-219 (459)
144 TIGR02030 BchI-ChlI magnesium 99.2 1.1E-10 2.3E-15 119.3 15.0 149 207-392 2-220 (337)
145 TIGR03346 chaperone_ClpB ATP-d 99.2 1.6E-10 3.4E-15 132.2 16.3 148 208-392 564-777 (852)
146 PRK14088 dnaA chromosomal repl 99.2 3.8E-11 8.2E-16 127.5 10.0 181 201-419 97-305 (440)
147 PRK12422 chromosomal replicati 99.2 3.5E-11 7.6E-16 127.5 9.4 127 227-393 142-286 (445)
148 CHL00095 clpC Clp protease ATP 99.2 1.7E-10 3.7E-15 131.5 15.5 146 209-392 509-733 (821)
149 PRK08058 DNA polymerase III su 99.2 1.3E-10 2.7E-15 119.1 12.5 140 208-389 4-180 (329)
150 PTZ00112 origin recognition co 99.2 4E-10 8.6E-15 124.0 16.6 181 210-442 756-988 (1164)
151 PRK05707 DNA polymerase III su 99.2 2.1E-10 4.5E-15 117.1 13.5 124 226-391 22-178 (328)
152 PRK05642 DNA replication initi 99.2 1.5E-10 3.3E-15 112.8 11.7 125 227-390 46-178 (234)
153 TIGR03345 VI_ClpV1 type VI sec 99.2 9E-11 1.9E-15 133.5 11.5 145 209-392 566-781 (852)
154 TIGR00390 hslU ATP-dependent p 99.2 1.4E-10 3.1E-15 119.7 11.8 35 226-260 47-81 (441)
155 PF07724 AAA_2: AAA domain (Cd 99.2 3.9E-11 8.5E-16 111.2 7.0 106 228-357 5-131 (171)
156 PRK07952 DNA replication prote 99.2 4.9E-11 1.1E-15 116.5 7.6 89 201-289 64-174 (244)
157 PF07726 AAA_3: ATPase family 99.2 3.1E-11 6.8E-16 104.9 5.5 104 229-369 2-129 (131)
158 PRK06620 hypothetical protein; 99.2 2.2E-10 4.8E-15 110.1 11.6 113 227-392 45-161 (214)
159 PRK05201 hslU ATP-dependent pr 99.2 2.1E-10 4.5E-15 118.6 11.6 51 211-261 17-85 (443)
160 PF01078 Mg_chelatase: Magnesi 99.1 8.6E-11 1.9E-15 110.8 7.6 43 208-250 2-46 (206)
161 PRK07399 DNA polymerase III su 99.1 7.5E-10 1.6E-14 112.4 14.1 142 207-391 2-195 (314)
162 PF00308 Bac_DnaA: Bacterial d 99.1 2.4E-10 5.1E-15 110.4 9.8 129 228-393 36-181 (219)
163 COG0470 HolB ATPase involved i 99.1 8.3E-10 1.8E-14 112.3 13.6 120 226-387 24-177 (325)
164 smart00763 AAA_PrkA PrkA AAA d 99.1 9.4E-10 2E-14 112.1 13.7 54 206-259 47-118 (361)
165 PRK14087 dnaA chromosomal repl 99.1 3.8E-10 8.1E-15 120.1 11.3 129 227-393 142-290 (450)
166 KOG1969 DNA replication checkp 99.1 7.3E-10 1.6E-14 118.9 13.2 91 196-288 260-398 (877)
167 PRK13531 regulatory ATPase Rav 99.1 6.2E-10 1.3E-14 117.2 11.3 141 212-390 23-193 (498)
168 PF13177 DNA_pol3_delta2: DNA 99.1 2.1E-09 4.6E-14 98.8 13.5 123 214-378 2-161 (162)
169 TIGR02442 Cob-chelat-sub cobal 99.1 3.7E-10 8E-15 125.2 10.0 149 207-392 2-215 (633)
170 smart00382 AAA ATPases associa 99.1 7.4E-10 1.6E-14 96.8 9.3 64 227-290 3-91 (148)
171 PRK08116 hypothetical protein; 99.0 8.1E-10 1.8E-14 109.8 10.3 116 227-380 115-251 (268)
172 PRK06964 DNA polymerase III su 99.0 1.9E-09 4E-14 110.3 13.0 123 226-390 21-203 (342)
173 PRK06526 transposase; Provisio 99.0 3.1E-10 6.7E-15 111.8 6.5 121 159-289 37-171 (254)
174 PRK08181 transposase; Validate 99.0 4.6E-10 1E-14 111.2 7.8 64 226-289 106-179 (269)
175 smart00350 MCM minichromosome 99.0 9.6E-10 2.1E-14 119.0 10.1 144 211-392 205-401 (509)
176 COG1474 CDC6 Cdc6-related prot 99.0 7.1E-09 1.5E-13 107.2 15.2 143 211-391 19-203 (366)
177 PRK09087 hypothetical protein; 99.0 2E-09 4.4E-14 104.3 10.0 139 206-392 18-167 (226)
178 PRK12377 putative replication 99.0 1.7E-09 3.7E-14 105.9 9.2 63 226-288 101-174 (248)
179 PRK06871 DNA polymerase III su 98.9 1.1E-08 2.3E-13 104.0 14.1 123 226-390 24-178 (325)
180 TIGR00602 rad24 checkpoint pro 98.9 3.9E-09 8.5E-14 115.7 11.4 158 196-393 73-289 (637)
181 TIGR02031 BchD-ChlD magnesium 98.9 1.2E-08 2.6E-13 112.0 15.3 128 227-391 17-174 (589)
182 PF12775 AAA_7: P-loop contain 98.9 3.1E-09 6.7E-14 105.8 8.6 137 226-392 33-194 (272)
183 PRK04132 replication factor C 98.9 1.1E-08 2.4E-13 114.9 13.6 121 229-391 567-702 (846)
184 PRK06090 DNA polymerase III su 98.9 2E-08 4.4E-13 101.7 14.1 122 226-389 25-178 (319)
185 PRK08769 DNA polymerase III su 98.9 1.9E-08 4.2E-13 102.0 13.7 122 226-389 26-183 (319)
186 PRK07993 DNA polymerase III su 98.9 1.5E-08 3.3E-13 103.7 12.7 122 226-389 24-178 (334)
187 PRK08699 DNA polymerase III su 98.8 1.5E-08 3.2E-13 103.5 11.0 122 226-389 21-183 (325)
188 TIGR00368 Mg chelatase-related 98.8 3.2E-08 6.9E-13 106.3 13.6 142 205-383 188-396 (499)
189 PRK08939 primosomal protein Dn 98.8 9.6E-09 2.1E-13 103.9 8.0 63 226-288 156-228 (306)
190 PRK09183 transposase/IS protei 98.8 5.8E-09 1.3E-13 103.2 6.2 64 226-289 102-176 (259)
191 KOG0741 AAA+-type ATPase [Post 98.8 3E-08 6.4E-13 103.3 11.5 134 227-389 539-684 (744)
192 PF06068 TIP49: TIP49 C-termin 98.8 4E-08 8.7E-13 99.5 12.1 55 208-262 23-88 (398)
193 PRK11608 pspF phage shock prot 98.8 5.2E-08 1.1E-12 99.7 12.9 147 208-392 5-195 (326)
194 KOG0991 Replication factor C, 98.8 2.4E-08 5.1E-13 94.5 9.3 140 201-382 19-176 (333)
195 COG1224 TIP49 DNA helicase TIP 98.8 1.8E-07 4E-12 93.5 15.5 54 209-262 39-103 (450)
196 COG1219 ClpX ATP-dependent pro 98.8 2.1E-08 4.5E-13 98.8 8.7 65 226-290 97-175 (408)
197 PF00158 Sigma54_activat: Sigm 98.8 3.6E-08 7.8E-13 91.2 9.7 75 215-289 5-105 (168)
198 TIGR02974 phageshock_pspF psp 98.7 5.4E-08 1.2E-12 99.6 11.4 129 226-392 22-188 (329)
199 PF01695 IstB_IS21: IstB-like 98.7 4.5E-09 9.7E-14 98.1 2.9 63 226-288 47-119 (178)
200 COG1239 ChlI Mg-chelatase subu 98.7 5.4E-08 1.2E-12 99.9 10.8 151 206-393 14-234 (423)
201 TIGR01817 nifA Nif-specific re 98.7 8.2E-08 1.8E-12 104.9 13.0 169 206-419 193-405 (534)
202 PRK09862 putative ATP-dependen 98.7 2.3E-08 5E-13 107.0 8.3 139 207-382 189-392 (506)
203 PRK11388 DNA-binding transcrip 98.7 1.5E-07 3.3E-12 104.9 13.2 83 207-289 323-428 (638)
204 COG0593 DnaA ATPase involved i 98.7 1.9E-07 4.1E-12 96.9 12.7 181 202-420 80-287 (408)
205 PF03215 Rad17: Rad17 cell cyc 98.7 1.7E-07 3.7E-12 101.0 12.4 61 195-257 7-76 (519)
206 COG1484 DnaC DNA replication p 98.6 9.3E-08 2E-12 94.3 9.2 63 226-288 105-178 (254)
207 KOG0745 Putative ATP-dependent 98.6 8.2E-08 1.8E-12 98.0 8.7 132 226-380 226-388 (564)
208 PRK06835 DNA replication prote 98.6 7.1E-08 1.5E-12 98.4 8.0 63 226-288 183-257 (329)
209 COG0606 Predicted ATPase with 98.6 5.5E-08 1.2E-12 101.2 6.7 46 205-250 175-222 (490)
210 PRK05917 DNA polymerase III su 98.6 8.3E-07 1.8E-11 88.6 14.4 111 226-378 19-154 (290)
211 TIGR03015 pepcterm_ATPase puta 98.6 4E-07 8.6E-12 90.3 12.1 23 229-251 46-68 (269)
212 TIGR02329 propionate_PrpR prop 98.6 4.1E-07 8.9E-12 98.5 12.2 150 205-392 208-402 (526)
213 PRK10820 DNA-binding transcrip 98.6 8.5E-07 1.8E-11 96.4 14.5 85 204-289 199-310 (520)
214 PRK06921 hypothetical protein; 98.6 1.3E-07 2.7E-12 94.0 7.1 63 226-288 117-188 (266)
215 PF14532 Sigma54_activ_2: Sigm 98.5 1.5E-07 3.2E-12 84.1 6.8 58 226-289 21-81 (138)
216 PF12774 AAA_6: Hydrolytic ATP 98.5 2.2E-06 4.7E-11 83.3 15.2 64 226-289 32-96 (231)
217 PRK05818 DNA polymerase III su 98.5 3.8E-06 8.1E-11 82.3 16.4 111 226-378 7-147 (261)
218 PF13173 AAA_14: AAA domain 98.5 2.3E-07 4.9E-12 81.7 6.9 63 227-289 3-73 (128)
219 PF00910 RNA_helicase: RNA hel 98.5 1.2E-07 2.5E-12 81.0 4.7 61 229-289 1-61 (107)
220 COG1221 PspF Transcriptional r 98.5 5.1E-07 1.1E-11 93.5 10.0 153 204-392 73-265 (403)
221 PRK15429 formate hydrogenlyase 98.5 9.6E-07 2.1E-11 99.3 13.0 83 206-289 373-482 (686)
222 PRK15424 propionate catabolism 98.5 9.3E-07 2E-11 95.7 12.3 83 206-289 216-334 (538)
223 PTZ00111 DNA replication licen 98.5 5.6E-07 1.2E-11 101.1 10.4 127 228-391 494-657 (915)
224 PRK05022 anaerobic nitric oxid 98.5 1.7E-06 3.6E-11 94.1 13.8 82 207-289 185-293 (509)
225 PRK07276 DNA polymerase III su 98.4 2.5E-06 5.5E-11 85.3 13.1 129 215-388 8-172 (290)
226 PF13401 AAA_22: AAA domain; P 98.4 5.4E-07 1.2E-11 79.0 7.3 63 227-289 5-99 (131)
227 KOG0990 Replication factor C, 98.4 3.1E-07 6.7E-12 90.9 6.2 149 201-391 33-203 (360)
228 PRK07132 DNA polymerase III su 98.4 3E-06 6.5E-11 85.4 13.3 123 225-389 17-160 (299)
229 COG1220 HslU ATP-dependent pro 98.4 2.3E-06 5E-11 85.3 12.0 36 226-261 50-85 (444)
230 KOG1942 DNA helicase, TBP-inte 98.4 5.9E-06 1.3E-10 80.8 14.2 27 226-252 64-90 (456)
231 TIGR00764 lon_rel lon-related 98.4 2.5E-06 5.3E-11 94.2 13.2 48 206-253 15-64 (608)
232 KOG2035 Replication factor C, 98.3 4.2E-06 9E-11 81.4 11.2 152 203-396 7-204 (351)
233 PF01637 Arch_ATPase: Archaeal 98.3 3.1E-06 6.6E-11 81.3 10.3 169 215-417 5-232 (234)
234 PF05729 NACHT: NACHT domain 98.3 3.3E-06 7.2E-11 76.6 9.5 64 227-290 1-94 (166)
235 COG5271 MDN1 AAA ATPase contai 98.3 5.3E-06 1.1E-10 95.6 12.2 134 219-393 1534-1705(4600)
236 KOG1051 Chaperone HSP104 and r 98.3 2.9E-06 6.3E-11 95.3 10.1 111 210-355 563-710 (898)
237 PRK10923 glnG nitrogen regulat 98.2 1E-05 2.2E-10 87.0 13.0 146 209-392 138-327 (469)
238 PRK13406 bchD magnesium chelat 98.2 5.3E-06 1.1E-10 90.8 10.0 120 227-383 26-174 (584)
239 PF03969 AFG1_ATPase: AFG1-lik 98.2 1.7E-06 3.7E-11 89.5 5.7 93 226-356 62-168 (362)
240 PF08740 BCS1_N: BCS1 N termin 98.2 6.5E-05 1.4E-09 70.6 15.6 130 65-211 33-187 (187)
241 TIGR02915 PEP_resp_reg putativ 98.2 1.3E-05 2.8E-10 85.6 11.8 63 226-289 162-245 (445)
242 TIGR01818 ntrC nitrogen regula 98.1 1.9E-05 4E-10 84.7 12.6 129 226-392 157-323 (463)
243 PRK11361 acetoacetate metaboli 98.1 1.5E-05 3.2E-10 85.3 11.8 63 226-289 166-249 (457)
244 PHA02624 large T antigen; Prov 98.1 6.6E-06 1.4E-10 88.7 8.8 121 226-377 431-561 (647)
245 PF05621 TniB: Bacterial TniB 98.1 2.4E-05 5.1E-10 78.0 11.7 65 226-290 61-158 (302)
246 COG3829 RocR Transcriptional r 98.1 8.1E-05 1.8E-09 79.0 16.1 152 202-392 238-435 (560)
247 KOG1051 Chaperone HSP104 and r 98.1 4.2E-05 9E-10 86.2 14.1 181 208-424 185-398 (898)
248 PF00493 MCM: MCM2/3/5 family 98.1 1.6E-06 3.5E-11 89.0 2.3 146 211-393 26-223 (331)
249 PRK15115 response regulator Gl 98.1 2.8E-05 6E-10 83.0 11.8 63 226-289 157-240 (444)
250 PHA00729 NTP-binding motif con 98.1 5.1E-06 1.1E-10 79.9 5.4 27 227-253 18-44 (226)
251 PF00931 NB-ARC: NB-ARC domain 98.0 2.8E-05 6.2E-10 77.6 10.3 132 217-393 4-172 (287)
252 PLN03210 Resistant to P. syrin 98.0 3.8E-05 8.3E-10 91.3 12.9 55 197-251 172-232 (1153)
253 KOG1970 Checkpoint RAD17-RFC c 98.0 3.2E-05 7E-10 81.7 10.3 61 195-257 70-141 (634)
254 KOG1514 Origin recognition com 98.0 0.00013 2.8E-09 79.2 14.1 130 228-394 424-592 (767)
255 PRK14722 flhF flagellar biosyn 97.9 3.3E-05 7.1E-10 80.0 8.9 62 227-288 138-226 (374)
256 PF05707 Zot: Zonular occluden 97.9 3.1E-05 6.7E-10 73.2 8.0 115 229-378 3-146 (193)
257 PF13207 AAA_17: AAA domain; P 97.9 6.7E-06 1.5E-10 71.1 2.8 30 229-258 2-31 (121)
258 KOG1968 Replication factor C, 97.9 5.1E-05 1.1E-09 86.0 10.1 125 228-392 359-503 (871)
259 KOG0478 DNA replication licens 97.9 8.4E-05 1.8E-09 80.2 11.0 77 213-289 433-538 (804)
260 PHA02774 E1; Provisional 97.9 5.8E-05 1.3E-09 81.2 9.7 53 227-286 435-488 (613)
261 PRK07261 topology modulation p 97.8 2.5E-05 5.4E-10 72.4 5.8 30 229-258 3-32 (171)
262 cd01120 RecA-like_NTPases RecA 97.8 5.9E-05 1.3E-09 67.9 8.2 31 229-259 2-35 (165)
263 PRK10365 transcriptional regul 97.8 0.00012 2.6E-09 77.9 11.6 63 226-289 162-245 (441)
264 KOG2227 Pre-initiation complex 97.8 0.00022 4.7E-09 74.3 12.7 150 209-394 150-341 (529)
265 COG2204 AtoC Response regulato 97.8 0.00023 4.9E-09 75.3 12.2 147 208-392 140-330 (464)
266 PRK15455 PrkA family serine pr 97.7 2.1E-05 4.6E-10 84.5 4.1 57 203-259 70-137 (644)
267 PF13604 AAA_30: AAA domain; P 97.7 0.00019 4.1E-09 68.0 10.1 49 213-261 2-56 (196)
268 KOG2680 DNA helicase TIP49, TB 97.7 0.00014 3.1E-09 71.6 8.4 48 347-397 318-377 (454)
269 COG5245 DYN1 Dynein, heavy cha 97.7 0.00019 4E-09 82.9 10.1 144 219-392 1484-1659(3164)
270 PRK00131 aroK shikimate kinase 97.7 3E-05 6.4E-10 71.3 3.2 33 226-258 4-36 (175)
271 COG1241 MCM2 Predicted ATPase 97.7 5.5E-05 1.2E-09 83.3 5.7 78 211-289 288-395 (682)
272 PRK08118 topology modulation p 97.7 6.1E-05 1.3E-09 69.6 5.2 33 228-260 3-35 (167)
273 PRK13947 shikimate kinase; Pro 97.5 6.5E-05 1.4E-09 69.2 3.3 32 228-259 3-34 (171)
274 TIGR02237 recomb_radB DNA repa 97.5 0.00028 6.1E-09 67.2 7.7 33 229-261 15-50 (209)
275 COG3604 FhlA Transcriptional r 97.5 0.00035 7.7E-09 73.4 8.8 84 206-289 220-329 (550)
276 PF13671 AAA_33: AAA domain; P 97.5 4.2E-05 9.2E-10 68.0 1.8 27 229-255 2-28 (143)
277 cd00464 SK Shikimate kinase (S 97.5 7.1E-05 1.5E-09 67.4 3.3 30 229-258 2-31 (154)
278 PRK00625 shikimate kinase; Pro 97.5 7E-05 1.5E-09 69.6 3.1 31 228-258 2-32 (173)
279 PRK03839 putative kinase; Prov 97.5 6.8E-05 1.5E-09 69.9 3.1 30 229-258 3-32 (180)
280 TIGR01618 phage_P_loop phage n 97.5 7.2E-05 1.6E-09 72.0 3.3 23 226-248 12-34 (220)
281 PF13086 AAA_11: AAA domain; P 97.5 8.7E-05 1.9E-09 71.1 3.5 38 213-250 2-41 (236)
282 PRK13949 shikimate kinase; Pro 97.5 7.9E-05 1.7E-09 69.0 3.0 32 227-258 2-33 (169)
283 COG0703 AroK Shikimate kinase 97.4 7.8E-05 1.7E-09 68.5 2.6 33 227-259 3-35 (172)
284 COG1618 Predicted nucleotide k 97.4 0.00063 1.4E-08 61.5 7.9 23 228-250 7-29 (179)
285 KOG2170 ATPase of the AAA+ sup 97.4 0.00038 8.2E-09 68.8 6.8 80 210-289 83-190 (344)
286 PF05272 VirE: Virulence-assoc 97.4 0.00028 6.2E-09 66.9 5.6 106 228-377 54-169 (198)
287 TIGR02688 conserved hypothetic 97.4 0.001 2.2E-08 69.4 10.0 63 226-289 209-272 (449)
288 KOG0480 DNA replication licens 97.4 0.00034 7.4E-09 75.1 6.6 148 208-393 344-544 (764)
289 PRK13765 ATP-dependent proteas 97.4 0.00027 5.8E-09 78.3 6.1 49 204-252 26-76 (637)
290 cd03281 ABC_MSH5_euk MutS5 hom 97.3 0.00093 2E-08 64.2 8.8 21 227-247 30-50 (213)
291 PRK06581 DNA polymerase III su 97.3 0.0036 7.8E-08 60.6 12.5 125 226-392 15-162 (263)
292 TIGR01313 therm_gnt_kin carboh 97.3 0.00016 3.5E-09 66.1 3.3 28 229-256 1-28 (163)
293 cd02021 GntK Gluconate kinase 97.3 0.00016 3.4E-09 65.1 3.1 28 229-256 2-29 (150)
294 PRK06217 hypothetical protein; 97.3 0.00017 3.7E-09 67.5 3.3 30 229-258 4-33 (183)
295 PRK05800 cobU adenosylcobinami 97.3 0.00036 7.9E-09 64.6 5.5 62 229-290 4-89 (170)
296 PF14516 AAA_35: AAA-like doma 97.3 0.002 4.3E-08 66.2 11.4 46 217-262 19-70 (331)
297 PRK13948 shikimate kinase; Pro 97.3 0.0002 4.3E-09 67.1 3.6 33 226-258 10-42 (182)
298 TIGR01359 UMP_CMP_kin_fam UMP- 97.3 0.00018 3.9E-09 67.0 3.2 28 229-256 2-29 (183)
299 cd02020 CMPK Cytidine monophos 97.3 0.00018 3.9E-09 64.1 3.0 30 229-258 2-31 (147)
300 PRK14532 adenylate kinase; Pro 97.3 0.00019 4.1E-09 67.3 3.2 29 229-257 3-31 (188)
301 KOG3347 Predicted nucleotide k 97.3 0.00017 3.8E-09 64.1 2.7 32 226-257 7-38 (176)
302 cd03283 ABC_MutS-like MutS-lik 97.3 0.0016 3.5E-08 61.9 9.5 63 226-288 25-116 (199)
303 PF13191 AAA_16: AAA ATPase do 97.2 0.00023 4.9E-09 65.9 3.4 50 213-262 4-63 (185)
304 PRK13946 shikimate kinase; Pro 97.2 0.0002 4.2E-09 67.2 2.9 34 226-259 10-43 (184)
305 PRK14531 adenylate kinase; Pro 97.2 0.00022 4.7E-09 66.8 3.2 30 227-256 3-32 (183)
306 cd01129 PulE-GspE PulE/GspE Th 97.2 0.0014 3E-08 65.1 9.1 46 206-251 57-105 (264)
307 COG1855 ATPase (PilT family) [ 97.2 0.00025 5.5E-09 73.4 3.8 46 207-253 245-290 (604)
308 PRK05057 aroK shikimate kinase 97.2 0.00024 5.2E-09 65.9 3.3 34 226-259 4-37 (172)
309 PRK08233 hypothetical protein; 97.2 0.0011 2.3E-08 61.5 7.7 30 229-258 6-36 (182)
310 PTZ00202 tuzin; Provisional 97.2 0.0095 2.1E-07 62.5 15.0 56 205-260 258-320 (550)
311 cd01394 radB RadB. The archaea 97.2 0.0012 2.7E-08 63.3 8.1 35 226-260 17-56 (218)
312 cd01428 ADK Adenylate kinase ( 97.2 0.00026 5.6E-09 66.4 3.2 29 229-257 2-30 (194)
313 PRK03731 aroL shikimate kinase 97.2 0.00028 6.2E-09 65.0 3.4 31 228-258 4-34 (171)
314 TIGR00150 HI0065_YjeE ATPase, 97.2 0.0017 3.6E-08 57.6 8.0 25 228-252 24-48 (133)
315 COG1373 Predicted ATPase (AAA+ 97.2 0.0023 5E-08 67.4 10.3 116 228-385 39-161 (398)
316 PF06309 Torsin: Torsin; Inte 97.1 0.00038 8.2E-09 60.7 3.5 41 210-250 26-77 (127)
317 PRK08154 anaerobic benzoate ca 97.1 0.00043 9.2E-09 70.4 4.5 46 213-258 108-165 (309)
318 COG1102 Cmk Cytidylate kinase 97.1 0.00031 6.8E-09 63.4 3.0 28 229-256 3-30 (179)
319 PRK09376 rho transcription ter 97.1 0.0018 3.9E-08 67.1 8.9 23 229-251 172-194 (416)
320 PRK06762 hypothetical protein; 97.1 0.00036 7.8E-09 64.0 3.5 32 227-258 3-34 (166)
321 PRK12723 flagellar biosynthesi 97.1 0.0024 5.2E-08 66.8 9.9 25 226-250 174-198 (388)
322 PF02367 UPF0079: Uncharacteri 97.1 0.0011 2.3E-08 58.0 6.0 70 220-289 7-100 (123)
323 PF13245 AAA_19: Part of AAA d 97.1 0.00057 1.2E-08 54.5 3.9 33 227-259 10-50 (76)
324 COG3283 TyrR Transcriptional r 97.1 0.0028 6.1E-08 64.1 9.5 93 197-289 192-305 (511)
325 TIGR03499 FlhF flagellar biosy 97.1 0.0011 2.5E-08 66.4 7.0 35 227-261 195-234 (282)
326 PRK04296 thymidine kinase; Pro 97.1 0.0037 8.1E-08 58.9 10.1 29 229-257 5-36 (190)
327 PRK04841 transcriptional regul 97.1 0.0088 1.9E-07 69.5 15.2 57 202-259 7-64 (903)
328 PF00437 T2SE: Type II/IV secr 97.1 0.00091 2E-08 66.5 5.9 85 204-288 99-208 (270)
329 PRK14530 adenylate kinase; Pro 97.1 0.00041 8.9E-09 66.7 3.3 30 228-257 5-34 (215)
330 COG1936 Predicted nucleotide k 97.0 0.00033 7.1E-09 64.1 2.3 28 229-257 3-30 (180)
331 PRK02496 adk adenylate kinase; 97.0 0.0004 8.7E-09 64.9 2.9 29 229-257 4-32 (184)
332 TIGR01360 aden_kin_iso1 adenyl 97.0 0.00046 1E-08 64.3 3.2 29 228-256 5-33 (188)
333 KOG2228 Origin recognition com 97.0 0.0019 4.2E-08 64.9 7.7 130 226-392 49-220 (408)
334 cd00267 ABC_ATPase ABC (ATP-bi 97.0 0.0014 3.1E-08 59.5 6.2 25 227-251 26-50 (157)
335 PRK06547 hypothetical protein; 97.0 0.00046 1E-08 64.0 3.0 33 226-258 15-47 (172)
336 cd02019 NK Nucleoside/nucleoti 97.0 0.00077 1.7E-08 52.6 3.7 30 229-258 2-32 (69)
337 PRK14528 adenylate kinase; Pro 97.0 0.00051 1.1E-08 64.6 3.1 30 228-257 3-32 (186)
338 TIGR02858 spore_III_AA stage I 97.0 0.002 4.3E-08 64.2 7.3 25 227-251 112-136 (270)
339 COG1485 Predicted ATPase [Gene 97.0 0.0011 2.5E-08 67.0 5.6 26 226-251 65-90 (367)
340 cd00544 CobU Adenosylcobinamid 97.0 0.002 4.4E-08 59.6 6.8 62 229-290 2-86 (169)
341 PRK06067 flagellar accessory p 96.9 0.002 4.3E-08 62.7 7.0 33 227-259 26-61 (234)
342 cd00227 CPT Chloramphenicol (C 96.9 0.00048 1E-08 63.9 2.3 31 227-257 3-33 (175)
343 PF10443 RNA12: RNA12 protein; 96.9 0.0079 1.7E-07 62.8 11.4 44 348-393 186-231 (431)
344 PTZ00088 adenylate kinase 1; P 96.9 0.00063 1.4E-08 66.1 3.1 29 229-257 9-37 (229)
345 TIGR01613 primase_Cterm phage/ 96.9 0.0019 4.1E-08 65.5 6.7 72 214-288 54-139 (304)
346 cd01393 recA_like RecA is a b 96.9 0.0028 6E-08 61.1 7.6 33 229-261 22-63 (226)
347 PRK14529 adenylate kinase; Pro 96.9 0.00075 1.6E-08 65.2 3.4 27 229-255 3-29 (223)
348 TIGR01351 adk adenylate kinase 96.9 0.00073 1.6E-08 64.7 3.1 28 229-256 2-29 (210)
349 PRK00279 adk adenylate kinase; 96.8 0.00077 1.7E-08 64.8 3.2 29 229-257 3-31 (215)
350 TIGR01069 mutS2 MutS2 family p 96.8 0.012 2.7E-07 66.9 13.3 23 227-249 323-345 (771)
351 PF04665 Pox_A32: Poxvirus A32 96.8 0.014 3.1E-07 56.9 11.9 125 227-393 14-172 (241)
352 PRK04182 cytidylate kinase; Pr 96.8 0.0008 1.7E-08 62.1 3.1 28 229-256 3-30 (180)
353 COG4650 RtcR Sigma54-dependent 96.8 0.0023 4.9E-08 63.1 6.2 64 226-289 208-294 (531)
354 PRK08533 flagellar accessory p 96.8 0.0046 9.9E-08 60.2 8.5 32 227-258 25-59 (230)
355 PRK00409 recombination and DNA 96.8 0.0055 1.2E-07 69.9 10.3 63 226-288 327-418 (782)
356 PLN02199 shikimate kinase 96.8 0.0011 2.3E-08 66.3 4.0 40 220-259 95-135 (303)
357 PLN02200 adenylate kinase fami 96.8 0.00089 1.9E-08 65.3 3.2 29 227-255 44-72 (234)
358 cd03287 ABC_MSH3_euk MutS3 hom 96.8 0.0055 1.2E-07 59.3 8.6 62 227-288 32-121 (222)
359 PF13238 AAA_18: AAA domain; P 96.8 0.00062 1.3E-08 58.9 1.9 22 229-250 1-22 (129)
360 TIGR01448 recD_rel helicase, p 96.8 0.0066 1.4E-07 68.7 10.4 40 211-250 322-362 (720)
361 TIGR02012 tigrfam_recA protein 96.8 0.0042 9.1E-08 63.2 8.0 63 228-290 57-146 (321)
362 PRK04040 adenylate kinase; Pro 96.8 0.0009 1.9E-08 63.0 2.9 29 227-255 3-33 (188)
363 PRK14527 adenylate kinase; Pro 96.8 0.00072 1.6E-08 63.7 2.3 30 227-256 7-36 (191)
364 PRK13808 adenylate kinase; Pro 96.8 0.0027 5.9E-08 64.8 6.5 29 229-257 3-31 (333)
365 PRK01184 hypothetical protein; 96.7 0.001 2.2E-08 62.1 3.1 29 228-257 3-31 (184)
366 COG2804 PulE Type II secretory 96.7 0.0089 1.9E-07 63.5 10.3 48 206-253 235-285 (500)
367 PF13521 AAA_28: AAA domain; P 96.7 0.00091 2E-08 61.2 2.7 26 229-255 2-27 (163)
368 PF01745 IPT: Isopentenyl tran 96.7 0.001 2.2E-08 63.0 3.0 34 228-261 3-36 (233)
369 PF00406 ADK: Adenylate kinase 96.7 0.00081 1.8E-08 60.7 2.3 26 231-256 1-26 (151)
370 cd02027 APSK Adenosine 5'-phos 96.7 0.0012 2.7E-08 59.6 3.5 30 229-258 2-34 (149)
371 PRK12727 flagellar biosynthesi 96.7 0.0069 1.5E-07 65.2 9.6 23 228-250 352-374 (559)
372 PRK13764 ATPase; Provisional 96.7 0.0011 2.4E-08 72.6 3.6 47 204-251 236-282 (602)
373 COG2805 PilT Tfp pilus assembl 96.7 0.0014 3E-08 65.0 3.9 52 198-252 99-151 (353)
374 PF08298 AAA_PrkA: PrkA AAA do 96.7 0.0017 3.7E-08 66.2 4.7 55 208-262 59-125 (358)
375 cd01128 rho_factor Transcripti 96.7 0.0036 7.7E-08 61.6 6.8 25 228-252 18-42 (249)
376 TIGR02173 cyt_kin_arch cytidyl 96.7 0.0012 2.5E-08 60.6 3.1 29 229-257 3-31 (171)
377 cd03284 ABC_MutS1 MutS1 homolo 96.7 0.0051 1.1E-07 59.2 7.7 62 227-288 31-120 (216)
378 smart00487 DEXDc DEAD-like hel 96.7 0.01 2.3E-07 54.4 9.5 24 227-250 25-49 (201)
379 PRK05703 flhF flagellar biosyn 96.7 0.011 2.3E-07 62.8 10.6 34 228-261 223-261 (424)
380 cd00983 recA RecA is a bacter 96.7 0.0046 9.9E-08 63.0 7.4 65 226-290 53-146 (325)
381 PRK10078 ribose 1,5-bisphospho 96.7 0.0012 2.5E-08 62.0 2.9 29 228-256 4-32 (186)
382 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.7 0.0047 1E-07 55.5 6.7 60 227-289 27-100 (144)
383 PRK12608 transcription termina 96.7 0.0041 9E-08 64.2 7.0 35 217-251 119-158 (380)
384 PRK14526 adenylate kinase; Pro 96.7 0.0014 2.9E-08 63.0 3.2 28 229-256 3-30 (211)
385 PF10236 DAP3: Mitochondrial r 96.6 0.029 6.3E-07 57.0 13.1 98 277-392 156-278 (309)
386 PRK06696 uridine kinase; Valid 96.6 0.0031 6.7E-08 61.0 5.7 36 228-263 24-62 (223)
387 PF06431 Polyoma_lg_T_C: Polyo 96.6 0.0049 1.1E-07 62.8 7.2 121 226-377 155-285 (417)
388 COG0563 Adk Adenylate kinase a 96.6 0.0014 3E-08 61.2 3.1 26 228-253 2-27 (178)
389 PHA02530 pseT polynucleotide k 96.6 0.0013 2.9E-08 66.3 3.2 29 227-255 3-32 (300)
390 cd03222 ABC_RNaseL_inhibitor T 96.6 0.0049 1.1E-07 57.5 6.7 63 228-290 27-102 (177)
391 PF08433 KTI12: Chromatin asso 96.6 0.0022 4.8E-08 63.9 4.6 61 229-289 4-82 (270)
392 smart00534 MUTSac ATPase domai 96.6 0.0087 1.9E-07 56.1 8.4 60 229-288 2-89 (185)
393 cd01121 Sms Sms (bacterial rad 96.6 0.0053 1.2E-07 63.9 7.6 61 229-290 85-171 (372)
394 PRK11823 DNA repair protein Ra 96.6 0.0055 1.2E-07 65.5 7.9 62 229-290 83-169 (446)
395 cd03282 ABC_MSH4_euk MutS4 hom 96.6 0.005 1.1E-07 58.8 6.7 22 227-248 30-51 (204)
396 PF07693 KAP_NTPase: KAP famil 96.6 0.012 2.7E-07 59.8 9.9 28 226-253 20-47 (325)
397 TIGR03574 selen_PSTK L-seryl-t 96.6 0.0017 3.6E-08 63.9 3.4 31 229-259 2-35 (249)
398 PRK10646 ADP-binding protein; 96.6 0.0094 2E-07 54.0 7.9 60 229-288 31-112 (153)
399 cd01124 KaiC KaiC is a circadi 96.6 0.0021 4.4E-08 59.8 3.8 31 229-259 2-35 (187)
400 TIGR02525 plasmid_TraJ plasmid 96.6 0.0031 6.8E-08 65.5 5.4 42 207-250 131-173 (372)
401 PRK13889 conjugal transfer rel 96.6 0.0095 2.1E-07 69.1 9.8 79 211-289 345-445 (988)
402 PRK10436 hypothetical protein; 96.5 0.015 3.3E-07 62.2 10.7 82 206-287 195-297 (462)
403 KOG2383 Predicted ATPase [Gene 96.5 0.0054 1.2E-07 63.0 6.7 22 226-247 114-135 (467)
404 KOG0477 DNA replication licens 96.5 0.0016 3.5E-08 69.9 3.1 61 229-289 485-558 (854)
405 TIGR02768 TraA_Ti Ti-type conj 96.5 0.0083 1.8E-07 68.2 8.9 79 211-289 351-451 (744)
406 TIGR02782 TrbB_P P-type conjug 96.5 0.0032 7E-08 63.7 5.0 38 213-250 117-156 (299)
407 PF12780 AAA_8: P-loop contain 96.5 0.0051 1.1E-07 61.2 6.3 62 226-287 30-99 (268)
408 cd03280 ABC_MutS2 MutS2 homolo 96.5 0.0084 1.8E-07 56.9 7.4 21 227-247 29-49 (200)
409 TIGR02538 type_IV_pilB type IV 96.5 0.015 3.2E-07 64.1 10.4 46 206-251 293-341 (564)
410 TIGR00767 rho transcription te 96.5 0.0056 1.2E-07 63.8 6.5 26 226-251 166-193 (415)
411 COG3267 ExeA Type II secretory 96.5 0.04 8.7E-07 53.7 11.8 132 226-393 50-215 (269)
412 PHA00350 putative assembly pro 96.4 0.01 2.2E-07 62.1 8.3 62 229-292 4-96 (399)
413 PRK12339 2-phosphoglycerate ki 96.4 0.0023 5E-08 60.7 3.3 28 227-254 4-31 (197)
414 TIGR00376 DNA helicase, putati 96.4 0.0066 1.4E-07 67.7 7.5 50 211-260 156-210 (637)
415 cd03243 ABC_MutS_homologs The 96.4 0.0098 2.1E-07 56.5 7.6 21 227-247 30-50 (202)
416 PRK05541 adenylylsulfate kinas 96.4 0.0026 5.6E-08 58.9 3.2 25 227-251 8-32 (176)
417 COG5271 MDN1 AAA ATPase contai 96.4 0.019 4.1E-07 67.9 10.4 149 209-392 865-1048(4600)
418 KOG2543 Origin recognition com 96.3 0.047 1E-06 56.0 12.1 35 226-260 30-64 (438)
419 PF00488 MutS_V: MutS domain V 96.3 0.015 3.2E-07 56.8 8.3 62 227-288 44-133 (235)
420 COG3854 SpoIIIAA ncharacterize 96.3 0.0083 1.8E-07 57.5 6.2 25 227-251 138-162 (308)
421 cd02022 DPCK Dephospho-coenzym 96.3 0.003 6.5E-08 58.9 3.3 29 229-258 2-30 (179)
422 TIGR02322 phosphon_PhnN phosph 96.3 0.0024 5.2E-08 59.2 2.6 25 228-252 3-27 (179)
423 cd03216 ABC_Carb_Monos_I This 96.3 0.0099 2.1E-07 54.5 6.5 24 227-250 27-50 (163)
424 cd03227 ABC_Class2 ABC-type Cl 96.3 0.015 3.3E-07 53.2 7.7 63 227-289 22-111 (162)
425 PF01583 APS_kinase: Adenylyls 96.3 0.0038 8.3E-08 56.8 3.6 34 229-262 5-41 (156)
426 cd04159 Arl10_like Arl10-like 96.3 0.0069 1.5E-07 53.7 5.3 21 229-249 2-22 (159)
427 PRK12338 hypothetical protein; 96.3 0.003 6.4E-08 64.1 3.1 29 226-254 4-32 (319)
428 PRK00889 adenylylsulfate kinas 96.3 0.0035 7.6E-08 58.0 3.4 31 228-258 6-39 (175)
429 cd01867 Rab8_Rab10_Rab13_like 96.2 0.013 2.7E-07 53.5 7.0 22 228-249 5-26 (167)
430 KOG0481 DNA replication licens 96.2 0.019 4.1E-07 60.7 8.8 77 213-289 335-440 (729)
431 COG0802 Predicted ATPase or ki 96.2 0.016 3.4E-07 52.0 7.1 56 229-287 28-108 (149)
432 PF00448 SRP54: SRP54-type pro 96.2 0.0028 6.1E-08 60.1 2.6 35 226-260 1-38 (196)
433 PRK11545 gntK gluconate kinase 96.2 0.0035 7.5E-08 57.6 3.1 26 232-257 1-26 (163)
434 TIGR02868 CydC thiol reductant 96.2 0.0039 8.4E-08 68.2 4.0 31 221-251 350-386 (529)
435 cd00561 CobA_CobO_BtuR ATP:cor 96.2 0.032 7E-07 51.0 9.3 31 227-257 2-36 (159)
436 PF03266 NTPase_1: NTPase; In 96.2 0.0031 6.7E-08 58.3 2.7 22 229-250 2-23 (168)
437 TIGR02524 dot_icm_DotB Dot/Icm 96.2 0.0055 1.2E-07 63.5 4.8 44 205-250 114-158 (358)
438 PRK09825 idnK D-gluconate kina 96.2 0.0063 1.4E-07 56.7 4.7 26 228-253 5-30 (176)
439 KOG0482 DNA replication licens 96.2 0.0052 1.1E-07 64.7 4.5 149 211-391 344-539 (721)
440 PLN02674 adenylate kinase 96.2 0.0035 7.5E-08 61.4 3.1 29 227-255 32-60 (244)
441 PRK11176 lipid transporter ATP 96.2 0.01 2.3E-07 65.6 7.3 23 229-251 372-394 (582)
442 cd03115 SRP The signal recogni 96.2 0.0048 1E-07 56.9 3.7 35 229-263 3-40 (173)
443 TIGR02533 type_II_gspE general 96.2 0.0049 1.1E-07 66.6 4.3 47 205-251 218-267 (486)
444 cd04177 RSR1 RSR1 subgroup. R 96.2 0.021 4.5E-07 52.1 8.0 21 229-249 4-24 (168)
445 PF03029 ATP_bind_1: Conserved 96.2 0.0037 7.9E-08 61.2 3.0 31 231-261 1-34 (238)
446 PRK11174 cysteine/glutathione 96.1 0.011 2.3E-07 65.7 7.0 25 226-250 374-400 (588)
447 cd01130 VirB11-like_ATPase Typ 96.1 0.0052 1.1E-07 57.6 4.0 38 214-251 11-50 (186)
448 PRK08099 bifunctional DNA-bind 96.1 0.0048 1E-07 64.9 4.1 29 226-254 219-247 (399)
449 PRK13894 conjugal transfer ATP 96.1 0.021 4.5E-07 58.3 8.6 25 226-250 148-172 (319)
450 cd01131 PilT Pilus retraction 96.1 0.0032 6.9E-08 59.8 2.5 23 229-251 4-26 (198)
451 PF08423 Rad51: Rad51; InterP 96.1 0.017 3.6E-07 57.2 7.7 43 226-268 36-89 (256)
452 PLN02165 adenylate isopentenyl 96.1 0.0035 7.6E-08 63.8 2.9 33 228-260 45-77 (334)
453 cd03286 ABC_MSH6_euk MutS6 hom 96.1 0.017 3.6E-07 55.8 7.5 62 227-288 31-120 (218)
454 PRK13826 Dtr system oriT relax 96.1 0.018 3.9E-07 67.3 8.9 79 211-289 380-480 (1102)
455 TIGR02857 CydD thiol reductant 96.1 0.013 2.8E-07 64.1 7.4 26 226-251 346-373 (529)
456 COG2874 FlaH Predicted ATPases 96.1 0.013 2.9E-07 55.5 6.3 23 226-248 26-50 (235)
457 PRK13833 conjugal transfer pro 96.1 0.0076 1.6E-07 61.5 5.1 25 226-250 144-168 (323)
458 PRK06761 hypothetical protein; 96.1 0.0046 1E-07 61.8 3.4 32 228-259 5-36 (282)
459 cd04160 Arfrp1 Arfrp1 subfamil 96.1 0.011 2.5E-07 53.4 5.8 21 229-249 2-22 (167)
460 PF09848 DUF2075: Uncharacteri 96.1 0.0075 1.6E-07 62.5 5.1 24 227-250 2-25 (352)
461 COG2274 SunT ABC-type bacterio 96.1 0.012 2.7E-07 66.1 7.1 25 226-250 497-523 (709)
462 PRK09361 radB DNA repair and r 96.1 0.0093 2E-07 57.5 5.4 32 229-260 26-60 (225)
463 PLN02459 probable adenylate ki 96.1 0.0044 9.6E-08 61.1 3.2 28 229-256 32-59 (261)
464 PRK05480 uridine/cytidine kina 96.1 0.006 1.3E-07 58.2 4.0 32 228-259 8-40 (209)
465 PRK14730 coaE dephospho-CoA ki 96.0 0.0046 9.9E-08 58.6 3.0 30 229-258 4-33 (195)
466 PRK06851 hypothetical protein; 96.0 0.006 1.3E-07 63.2 4.0 43 219-261 207-252 (367)
467 PF01443 Viral_helicase1: Vira 96.0 0.004 8.6E-08 60.1 2.6 22 229-250 1-22 (234)
468 PF13555 AAA_29: P-loop contai 96.0 0.0043 9.4E-08 47.3 2.2 22 229-250 26-47 (62)
469 COG4088 Predicted nucleotide k 96.0 0.0024 5.3E-08 60.0 1.0 25 229-253 4-28 (261)
470 PHA00012 I assembly protein 96.0 0.017 3.8E-07 58.2 7.1 57 276-364 80-136 (361)
471 KOG3354 Gluconate kinase [Carb 96.0 0.0036 7.9E-08 56.2 2.0 42 228-271 14-55 (191)
472 cd04119 RJL RJL (RabJ-Like) su 96.0 0.0099 2.2E-07 53.5 5.1 21 229-249 3-23 (168)
473 PF06414 Zeta_toxin: Zeta toxi 96.0 0.0044 9.5E-08 58.8 2.7 37 226-262 15-52 (199)
474 PRK11889 flhF flagellar biosyn 96.0 0.013 2.9E-07 60.9 6.4 34 226-259 241-277 (436)
475 cd02028 UMPK_like Uridine mono 96.0 0.0057 1.2E-07 57.1 3.4 33 229-261 2-37 (179)
476 TIGR00235 udk uridine kinase. 96.0 0.0044 9.6E-08 59.1 2.7 23 229-251 9-31 (207)
477 TIGR02238 recomb_DMC1 meiotic 96.0 0.016 3.5E-07 59.0 6.9 33 229-261 99-140 (313)
478 cd01863 Rab18 Rab18 subfamily. 95.9 0.026 5.7E-07 50.7 7.5 21 229-249 3-23 (161)
479 TIGR03263 guanyl_kin guanylate 95.9 0.0041 8.8E-08 57.6 2.2 25 228-252 3-27 (180)
480 PRK05973 replicative DNA helic 95.9 0.0069 1.5E-07 59.1 3.8 32 228-259 66-100 (237)
481 cd02024 NRK1 Nicotinamide ribo 95.9 0.0056 1.2E-07 57.6 3.0 29 229-257 2-31 (187)
482 cd02023 UMPK Uridine monophosp 95.9 0.0073 1.6E-07 57.0 3.9 31 229-259 2-33 (198)
483 cd01123 Rad51_DMC1_radA Rad51_ 95.9 0.013 2.8E-07 56.8 5.6 33 229-261 22-63 (235)
484 KOG1808 AAA ATPase containing 95.9 0.019 4.1E-07 69.4 8.0 86 204-289 411-519 (1856)
485 PRK00091 miaA tRNA delta(2)-is 95.9 0.0059 1.3E-07 61.9 3.3 33 227-259 5-37 (307)
486 TIGR00017 cmk cytidylate kinas 95.9 0.0062 1.3E-07 58.7 3.2 28 229-256 5-32 (217)
487 cd04137 RheB Rheb (Ras Homolog 95.9 0.033 7.1E-07 51.3 8.0 23 227-249 2-24 (180)
488 PRK14021 bifunctional shikimat 95.9 0.0055 1.2E-07 67.2 3.1 32 228-259 8-39 (542)
489 PRK00081 coaE dephospho-CoA ki 95.9 0.0069 1.5E-07 57.3 3.4 31 228-259 4-34 (194)
490 cd03239 ABC_SMC_head The struc 95.8 0.048 1E-06 50.8 9.0 22 229-250 25-46 (178)
491 cd00071 GMPK Guanosine monopho 95.8 0.0063 1.4E-07 54.2 2.9 25 229-253 2-26 (137)
492 cd04138 H_N_K_Ras_like H-Ras/N 95.8 0.048 1E-06 48.7 8.7 21 229-249 4-24 (162)
493 PRK08356 hypothetical protein; 95.8 0.007 1.5E-07 57.2 3.3 25 229-254 8-32 (195)
494 TIGR03878 thermo_KaiC_2 KaiC d 95.8 0.0079 1.7E-07 59.6 3.8 33 228-260 38-73 (259)
495 PF13479 AAA_24: AAA domain 95.8 0.0058 1.2E-07 58.7 2.7 60 228-291 5-82 (213)
496 smart00173 RAS Ras subfamily o 95.8 0.017 3.7E-07 52.1 5.7 21 229-249 3-23 (164)
497 TIGR00958 3a01208 Conjugate Tr 95.8 0.02 4.4E-07 65.0 7.4 25 226-250 505-531 (711)
498 PF06745 KaiC: KaiC; InterPro 95.8 0.0077 1.7E-07 58.1 3.5 31 229-259 22-56 (226)
499 PRK09354 recA recombinase A; P 95.8 0.024 5.1E-07 58.4 7.2 65 226-290 58-151 (349)
500 TIGR00416 sms DNA repair prote 95.8 0.031 6.7E-07 59.9 8.3 31 229-259 97-130 (454)
No 1
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-90 Score=701.12 Aligned_cols=426 Identities=49% Similarity=0.783 Sum_probs=391.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhcccCCcEEEEEeeccCCcCCccHHHHHHHHHHhcccCCCC
Q 037859 6 ELWATLGSVMASVMFASAIFKQYFPYQLQGYVEKYSQKLFRILYPYIEMTFHEFSGDRLKRSEAFSAIQNYLSTTASLHA 85 (504)
Q Consensus 6 ~~~~~~~S~~~~~~~~~~~~~~~~P~~l~~~i~~~~~~l~~~~~~~~ti~i~e~~~~~~~~n~~y~~~~~~ls~~~~~~~ 85 (504)
.+|+.++|++|++||+|+++++++|..++.|+..++++|+.++++|.++.+.|+.| +..|++|.+++.||+++.++.+
T Consensus 2 ~~~~~~~s~~~~~~~~~~~~~~~~p~~~~~y~~~~~~~l~g~~s~~~~~~~~e~~g--~~~n~~~~aie~yl~~k~~~~~ 79 (457)
T KOG0743|consen 2 SVFTAYASLLGSLMFIKSMLQDIIPPSINPYFISALRGLFGVFSSYALIRIGEQDG--VFRNQLYVAIEVYLSSKSSAIA 79 (457)
T ss_pred CccchhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhccCcccEEEEeehhcc--chHHHHHHHHHHhhhccchhhh
Confidence 57999999999999999999999999999999999999999999999999999855 8999999999999999999888
Q ss_pred CceEEEeeCCCCceEEEecCCCceeeeecCeEEEEEEeeecCCCCcccccCCCCCeeEEEEEEecccchhhhhhhHHHHH
Q 037859 86 TRFKADVVKDSQSIVLSMDDRQEVTDEFKGIKVWWVLGKNIPKTQSFSFYPATGEKRYYRLTFHKSHRELITGPYVNHVL 165 (504)
Q Consensus 86 ~~l~~~~~~~~~~~~~~~~~~~~v~d~f~g~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~yl~~~l 165 (504)
.+++.+...+++++++.++++++|.|.|+|++++|......++.+.+. +...+.|+++|+|+++||+.|+.+||+++.
T Consensus 80 ~rl~~~~~~~s~~~~l~~~~~~~i~d~f~gv~~~w~~~~~~~~~~~~~--~~~~~~r~~~L~f~k~~~e~V~~syl~~v~ 157 (457)
T KOG0743|consen 80 KRLTQNLSKNSKSLVLGLDDNEEISDEFEGVPVKWRHFVDYNEKWIFV--EREREKRYFELTFHKKPRELVTLSYLPYVV 157 (457)
T ss_pred hhhhhhhccccccceEEecCCcEEEEEEeceEEEEEEEEEecCccccc--ccCCcceEEEEEecCccHHHhHHhHHHHHH
Confidence 999999999999999999999999999999999999998765544322 445678999999999999999999999999
Q ss_pred hhhhhHHhhhccceecccCCCCCccCccCccceeeecCCCccccccccChhHHHHHHHhh-----------------ccc
Q 037859 166 AGGKAITVKNRQRKLYSNNPSKNWYGWRSTKWSHVFFEHPATFDTLAMETKKKEEIKKDL-----------------KKG 228 (504)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~p~~f~~~~~~~~~k~~i~~~l-----------------~rg 228 (504)
.++++|..+++++++|++.++..|..+.+..|++++|.||++|++++|++++|++|++|+ +||
T Consensus 158 ~~~k~I~~~~r~~kl~t~~~~~~~~~~~~~~W~~v~f~HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRG 237 (457)
T KOG0743|consen 158 SKAKEILEENRELKLYTNSGKTVIYTAKGGEWRSVGFPHPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRG 237 (457)
T ss_pred HHHHHHHHHHHHHHHhhcCCCcccccccCCcceecCCCCCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhcc
Confidence 999999999999999999998888877778999999999999999999999999999999 899
Q ss_pred ccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccCChHHHHHHHHhccCCeEEEEecccccccccccccccccccccccc
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQDNSELRSLLIDTSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEE 308 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~~l~~l~~~~~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~ 308 (504)
|||||||||||||++.|||++|+++||+++++.+..+.+|++++..++++|||+||||||.+++.+++.++....
T Consensus 238 YLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n~dLr~LL~~t~~kSIivIEDIDcs~~l~~~~~~~~~~~----- 312 (457)
T KOG0743|consen 238 YLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLDSDLRHLLLATPNKSILLIEDIDCSFDLRERRKKKKENF----- 312 (457)
T ss_pred ceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCcHHHHHHHHhCCCCcEEEEeecccccccccccccccccc-----
Confidence 999999999999999999999999999999999999999999999999999999999999988777664322110
Q ss_pred cCcccccccccCCCcchhhHHHHHhhhhcCccccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHH
Q 037859 309 KNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAK 388 (504)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~ 388 (504)
....+.+++|||||++||+||+|+++|||||||||+|+|||||+||||||+||+|++|++++++.|++
T Consensus 313 ------------~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~ 380 (457)
T KOG0743|consen 313 ------------EGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLAS 380 (457)
T ss_pred ------------cCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHH
Confidence 11356799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCcCC-cchHHHHhcCccCCCCCHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHhhHHHHHhHHHH
Q 037859 389 NYLDIDS-HELYAVIESMPAETNMTPADVAENLMPKCDEDDTETCLKNLIEALKAAKEEAIKKTEEE 454 (504)
Q Consensus 389 ~~l~~~~-~~~~~~i~~l~~~~~~s~a~i~~~l~~~~~~~~~~~~l~~li~al~~~~~~~~~~~~e~ 454 (504)
+||+... |.++++|+++..++.+|||||++.++... .+++.|++.++++++.++.+......+.
T Consensus 381 nYL~~~~~h~L~~eie~l~~~~~~tPA~V~e~lm~~~--~dad~~lk~Lv~~l~~~~~~~~~~~~~~ 445 (457)
T KOG0743|consen 381 NYLGIEEDHRLFDEIERLIEETEVTPAQVAEELMKNK--NDADVALKGLVEALESKKEKRNKDDKEL 445 (457)
T ss_pred HhcCCCCCcchhHHHHHHhhcCccCHHHHHHHHhhcc--ccHHHHHHHHHHHHHhhhhhhccchhhh
Confidence 9999975 99999999999999999999999999632 3899999999999999988766555444
No 2
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.2e-41 Score=329.31 Aligned_cols=218 Identities=25% Similarity=0.329 Sum_probs=166.5
Q ss_pred HHhhhccceecccCCCCCccCccCccceeeecCCCccccccccChhHHHHHHHhhcccccccCCCCCcHHHHHHHHHHhc
Q 037859 171 ITVKNRQRKLYSNNPSKNWYGWRSTKWSHVFFEHPATFDTLAMETKKKEEIKKDLKKGYLLYGPPGTGKSTMIAAMANFL 250 (504)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~p~~f~~~~~~~~~k~~i~~~l~rg~LL~GPpGtGKTsla~aiA~~l 250 (504)
|.+..+....|...++..-+-..=..-..+|+.||..|+.++++| |+|+|||||||||||.||+|+|++.
T Consensus 140 M~v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~P----------PKGVLLYGPPGTGKTLLAkAVA~~T 209 (406)
T COG1222 140 MEVEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDP----------PKGVLLYGPPGTGKTLLAKAVANQT 209 (406)
T ss_pred eeeccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCC----------CCceEeeCCCCCcHHHHHHHHHhcc
Confidence 333444444555554332111000234578999999999999999 9999999999999999999999999
Q ss_pred CCcEEEEecccc-----CChHH-HHHHHHhc--cCCeEEEEecccccccccccccccccccccccccCcccccccccCCC
Q 037859 251 NYDVYDLELTTV-----QDNSE-LRSLLIDT--SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGS 322 (504)
Q Consensus 251 ~~~i~~l~~~~~-----~~~~~-l~~l~~~~--~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (504)
+..++.+..+.+ +.+.+ +|.+|.-+ ..||||||||||++. ++|-. ++.+++
T Consensus 210 ~AtFIrvvgSElVqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg---~kR~d------------------~~t~gD 268 (406)
T COG1222 210 DATFIRVVGSELVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIG---AKRFD------------------SGTSGD 268 (406)
T ss_pred CceEEEeccHHHHHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhh---ccccc------------------CCCCch
Confidence 999999988764 33444 56666555 479999999999963 33321 234567
Q ss_pred cchhhHHHHHhhhhcCccccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCcCCcchHHHH
Q 037859 323 KKSKVTLSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDIDSHELYAVI 402 (504)
Q Consensus 323 ~~~~~~ls~lL~~lDg~~~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~~~~~~~~~i 402 (504)
.+-++++-+|||+|||+.. .+++-||||||+++.|||||+||||||++|+||+|+.+.|..|++.|...-.......+
T Consensus 269 rEVQRTmleLL~qlDGFD~--~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~ 346 (406)
T COG1222 269 REVQRTMLELLNQLDGFDP--RGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDL 346 (406)
T ss_pred HHHHHHHHHHHHhccCCCC--CCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCH
Confidence 7789999999999999954 67799999999999999999999999999999999999999999998764322222233
Q ss_pred hcCccCC-CCCHHHHHHhhC
Q 037859 403 ESMPAET-NMTPADVAENLM 421 (504)
Q Consensus 403 ~~l~~~~-~~s~a~i~~~l~ 421 (504)
+.++..+ ++|+|||...|.
T Consensus 347 e~la~~~~g~sGAdlkaict 366 (406)
T COG1222 347 ELLARLTEGFSGADLKAICT 366 (406)
T ss_pred HHHHHhcCCCchHHHHHHHH
Confidence 4445444 999999986543
No 3
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-37 Score=323.23 Aligned_cols=206 Identities=25% Similarity=0.381 Sum_probs=170.0
Q ss_pred cccCCCCCccCccCc--------cceeeecCCCccccccccChhHHHHHHHhhcccccccCCCCCcHHHHHHHHHHhcCC
Q 037859 181 YSNNPSKNWYGWRST--------KWSHVFFEHPATFDTLAMETKKKEEIKKDLKKGYLLYGPPGTGKSTMIAAMANFLNY 252 (504)
Q Consensus 181 ~~~~~~~~~~~~~~~--------~w~~~~~~~p~~f~~~~~~~~~k~~i~~~l~rg~LL~GPpGtGKTsla~aiA~~l~~ 252 (504)
....+...|++++|. .-...|..||..|..+++.+ |+|+|||||||||||++|+|+|++.+.
T Consensus 425 ~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~p----------pkGVLlyGPPGC~KT~lAkalAne~~~ 494 (693)
T KOG0730|consen 425 LVEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISP----------PKGVLLYGPPGCGKTLLAKALANEAGM 494 (693)
T ss_pred eccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCC----------CceEEEECCCCcchHHHHHHHhhhhcC
Confidence 344567788888753 11123899999999999999 999999999999999999999999999
Q ss_pred cEEEEecccc------CChHHHHHHHHhcc--CCeEEEEecccccccccccccccccccccccccCcccccccccCCCcc
Q 037859 253 DVYDLELTTV------QDNSELRSLLIDTS--SKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKK 324 (504)
Q Consensus 253 ~i~~l~~~~~------~~~~~l~~l~~~~~--~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (504)
+++.+....+ .++..++.+|..+. .|||||+||||++. ++|. ++++..
T Consensus 495 nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~---~~R~---------------------g~~~~v 550 (693)
T KOG0730|consen 495 NFLSVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALA---GSRG---------------------GSSSGV 550 (693)
T ss_pred CeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHh---hccC---------------------CCccch
Confidence 9999977654 35677999998875 68999999999974 3331 112256
Q ss_pred hhhHHHHHhhhhcCccccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCcCCcchHHHHhc
Q 037859 325 SKVTLSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDIDSHELYAVIES 404 (504)
Q Consensus 325 ~~~~ls~lL~~lDg~~~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~~~~~~~~~i~~ 404 (504)
..+++++||++|||+.. ..+++||++||+|+.||+||+||||||..|++++|+.+.|.+|++.++..-...-..+++.
T Consensus 551 ~~RVlsqLLtEmDG~e~--~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~ 628 (693)
T KOG0730|consen 551 TDRVLSQLLTEMDGLEA--LKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEE 628 (693)
T ss_pred HHHHHHHHHHHcccccc--cCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHH
Confidence 78899999999999954 4569999999999999999999999999999999999999999999987654443455677
Q ss_pred CccCC-CCCHHHHHHhhCC
Q 037859 405 MPAET-NMTPADVAENLMP 422 (504)
Q Consensus 405 l~~~~-~~s~a~i~~~l~~ 422 (504)
+++.+ +||+|||.++|..
T Consensus 629 La~~T~g~SGAel~~lCq~ 647 (693)
T KOG0730|consen 629 LAQATEGYSGAEIVAVCQE 647 (693)
T ss_pred HHHHhccCChHHHHHHHHH
Confidence 77766 9999999988764
No 4
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-35 Score=301.15 Aligned_cols=190 Identities=28% Similarity=0.374 Sum_probs=157.6
Q ss_pred ccccccccChhHHHHH---HHhh-------------cccccccCCCCCcHHHHHHHHHHhcCCcEEEEecccc------C
Q 037859 206 ATFDTLAMETKKKEEI---KKDL-------------KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTV------Q 263 (504)
Q Consensus 206 ~~f~~~~~~~~~k~~i---~~~l-------------~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~------~ 263 (504)
.+|++|-+-++.|+++ ++++ |+|+||.||||||||.||+|+|++.+.|+|....+.+ .
T Consensus 301 v~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~VGv 380 (752)
T KOG0734|consen 301 VTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFVGV 380 (752)
T ss_pred cccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhhcc
Confidence 3589998888888655 4444 9999999999999999999999999999999887765 2
Q ss_pred ChHHHHHHHHhcc--CCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccc
Q 037859 264 DNSELRSLLIDTS--SKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWS 341 (504)
Q Consensus 264 ~~~~l~~l~~~~~--~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~ 341 (504)
+..++|.+|..+. .||||||||||++- ++|. .......+.++++||..|||+..
T Consensus 381 GArRVRdLF~aAk~~APcIIFIDEiDavG---~kR~---------------------~~~~~y~kqTlNQLLvEmDGF~q 436 (752)
T KOG0734|consen 381 GARRVRDLFAAAKARAPCIIFIDEIDAVG---GKRN---------------------PSDQHYAKQTLNQLLVEMDGFKQ 436 (752)
T ss_pred cHHHHHHHHHHHHhcCCeEEEEechhhhc---ccCC---------------------ccHHHHHHHHHHHHHHHhcCcCc
Confidence 6688999998874 79999999999962 3331 11122678899999999999954
Q ss_pred cCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCcCCcchHHHHhcCccCC-CCCHHHHHHhh
Q 037859 342 ASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDIDSHELYAVIESMPAET-NMTPADVAENL 420 (504)
Q Consensus 342 ~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~~~~~~~~~i~~l~~~~-~~s~a~i~~~l 420 (504)
.+++|||++||.||.||+||+||||||++|.+|.||...|.+|++.|+..-.+....+..-+++.+ |||+|||++++
T Consensus 437 --NeGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlV 514 (752)
T KOG0734|consen 437 --NEGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLV 514 (752)
T ss_pred --CCceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHH
Confidence 567999999999999999999999999999999999999999999999865554333445566655 99999999765
Q ss_pred C
Q 037859 421 M 421 (504)
Q Consensus 421 ~ 421 (504)
-
T Consensus 515 N 515 (752)
T KOG0734|consen 515 N 515 (752)
T ss_pred H
Confidence 4
No 5
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-35 Score=303.80 Aligned_cols=208 Identities=24% Similarity=0.346 Sum_probs=170.4
Q ss_pred ceecccCCCCCccCccCc-------cc-eeeecCCCccccccccChhHHHHHHHhhcccccccCCCCCcHHHHHHHHHHh
Q 037859 178 RKLYSNNPSKNWYGWRST-------KW-SHVFFEHPATFDTLAMETKKKEEIKKDLKKGYLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~-------~w-~~~~~~~p~~f~~~~~~~~~k~~i~~~l~rg~LL~GPpGtGKTsla~aiA~~ 249 (504)
+.-|.-.|...|.+++.- .| ...|..||..|+.++++. |.|+|||||||||||.||+|+|++
T Consensus 499 REGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~----------PsGvLL~GPPGCGKTLlAKAVANE 568 (802)
T KOG0733|consen 499 REGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDA----------PSGVLLCGPPGCGKTLLAKAVANE 568 (802)
T ss_pred cccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCC----------CCceEEeCCCCccHHHHHHHHhhh
Confidence 445666678888877542 22 234899999999999988 899999999999999999999999
Q ss_pred cCCcEEEEecccc------CChHHHHHHHHhc--cCCeEEEEecccccccccccccccccccccccccCcccccccccCC
Q 037859 250 LNYDVYDLELTTV------QDNSELRSLLIDT--SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGG 321 (504)
Q Consensus 250 l~~~i~~l~~~~~------~~~~~l~~l~~~~--~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (504)
.+.+++.+....+ ++...+|.+|..+ ..||||||||||++++.++ .++
T Consensus 569 ag~NFisVKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~------------------------~~~ 624 (802)
T KOG0733|consen 569 AGANFISVKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRS------------------------DEG 624 (802)
T ss_pred ccCceEeecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccC------------------------CCC
Confidence 9999999876654 3556789999887 4799999999999864322 223
Q ss_pred CcchhhHHHHHhhhhcCccccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCcC-----Cc
Q 037859 322 SKKSKVTLSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDID-----SH 396 (504)
Q Consensus 322 ~~~~~~~ls~lL~~lDg~~~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~~-----~~ 396 (504)
...+.+++++||.+|||+.. +.++.||++||+|+.+|||++||||||..+++++|+.++|..|++...... ..
T Consensus 625 s~~s~RvvNqLLtElDGl~~--R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~d 702 (802)
T KOG0733|consen 625 SSVSSRVVNQLLTELDGLEE--RRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSD 702 (802)
T ss_pred chhHHHHHHHHHHHhccccc--ccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcc
Confidence 55677899999999999955 456999999999999999999999999999999999999999999887632 23
Q ss_pred chHHHHhcCccCCCCCHHHHHHhhC
Q 037859 397 ELYAVIESMPAETNMTPADVAENLM 421 (504)
Q Consensus 397 ~~~~~i~~l~~~~~~s~a~i~~~l~ 421 (504)
..+++|....+..|||+|||+.++.
T Consensus 703 Vdl~eia~~~~c~gftGADLaaLvr 727 (802)
T KOG0733|consen 703 VDLDEIARNTKCEGFTGADLAALVR 727 (802)
T ss_pred cCHHHHhhcccccCCchhhHHHHHH
Confidence 3456666666667999999997654
No 6
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-33 Score=291.56 Aligned_cols=186 Identities=25% Similarity=0.368 Sum_probs=152.6
Q ss_pred cCCCccccccccChhHHHHHHHhhcccccccCCCCCcHHHHHHHHHHhcCCcEEEEecccc------CChHHHHHHHHhc
Q 037859 202 FEHPATFDTLAMETKKKEEIKKDLKKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTV------QDNSELRSLLIDT 275 (504)
Q Consensus 202 ~~~p~~f~~~~~~~~~k~~i~~~l~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~------~~~~~l~~l~~~~ 275 (504)
..||..|.++++.| +||+|||||||||||+||+|+|++++.|++.++...+ .+...++.+|.++
T Consensus 209 i~~Pe~~~~lGv~P----------prGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSGESEkkiRelF~~A 278 (802)
T KOG0733|consen 209 IKHPEVFSSLGVRP----------PRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGESEKKIRELFDQA 278 (802)
T ss_pred hcCchhHhhcCCCC----------CCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCcccHHHHHHHHHHH
Confidence 56777777777777 9999999999999999999999999999999988765 3668899999998
Q ss_pred c--CCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCcccc--CCCceEEEE
Q 037859 276 S--SKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSA--SGEERIIVF 351 (504)
Q Consensus 276 ~--~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~--~~~~~ivI~ 351 (504)
. .|||+||||||++. ++|+ ..+....++++++||+.||++... .+..++||+
T Consensus 279 ~~~aPcivFiDeIDAI~---pkRe---------------------~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIg 334 (802)
T KOG0733|consen 279 KSNAPCIVFIDEIDAIT---PKRE---------------------EAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIG 334 (802)
T ss_pred hccCCeEEEeecccccc---cchh---------------------hHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEe
Confidence 5 69999999999973 3432 123345678999999999998643 247799999
Q ss_pred ecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCcCCcchHHHHhcCccCC-CCCHHHHHHhhC
Q 037859 352 TTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDIDSHELYAVIESMPAET-NMTPADVAENLM 421 (504)
Q Consensus 352 tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~~~~~~~~~i~~l~~~~-~~s~a~i~~~l~ 421 (504)
|||+|+.|||||.|+||||..|.+..|+..+|..|++..+..-.+...-++.+++..+ ||.+||+..++.
T Consensus 335 ATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~ 405 (802)
T KOG0733|consen 335 ATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCR 405 (802)
T ss_pred cCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHH
Confidence 9999999999999999999999999999999999999887643333322334455545 999999987655
No 7
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=3.6e-32 Score=287.83 Aligned_cols=205 Identities=25% Similarity=0.374 Sum_probs=155.4
Q ss_pred cccccccChhHHHHHHHhh----------------cccccccCCCCCcHHHHHHHHHHhcCCcEEEEecccc------CC
Q 037859 207 TFDTLAMETKKKEEIKKDL----------------KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTV------QD 264 (504)
Q Consensus 207 ~f~~~~~~~~~k~~i~~~l----------------~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~------~~ 264 (504)
.++++++-++.|..|++-+ +.|+|||||||||||.+|+|+|.+++..++.+....+ ++
T Consensus 670 ~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYVGqS 749 (953)
T KOG0736|consen 670 SWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYVGQS 749 (953)
T ss_pred chhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHhcch
Confidence 4667777777777777766 6789999999999999999999999999998876653 47
Q ss_pred hHHHHHHHHhcc--CCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCcccc
Q 037859 265 NSELRSLLIDTS--SKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSA 342 (504)
Q Consensus 265 ~~~l~~l~~~~~--~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~ 342 (504)
+.++|++|..+. .|||||+||+|++.+.+|... ..++.-.+++|+||.+|||+...
T Consensus 750 E~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sG----------------------DSGGVMDRVVSQLLAELDgls~~ 807 (953)
T KOG0736|consen 750 EENVREVFERARSAAPCVIFFDELDSLAPNRGRSG----------------------DSGGVMDRVVSQLLAELDGLSDS 807 (953)
T ss_pred HHHHHHHHHHhhccCCeEEEeccccccCccCCCCC----------------------CccccHHHHHHHHHHHhhcccCC
Confidence 789999999885 799999999999876555431 12334567999999999999865
Q ss_pred CCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCC-HHHHHHHHHHhcC---cCCcchHHHHhcCccCCCCCHHHHHH
Q 037859 343 SGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCC-FEAFKVLAKNYLD---IDSHELYAVIESMPAETNMTPADVAE 418 (504)
Q Consensus 343 ~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~-~e~~~~i~~~~l~---~~~~~~~~~i~~l~~~~~~s~a~i~~ 418 (504)
....++||+|||+||.|||||+||||||+-++++.+. .+.+..+++..-. .+......+|.+.. ..+||+||+-.
T Consensus 808 ~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~c-p~~~TGADlYs 886 (953)
T KOG0736|consen 808 SSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKC-PPNMTGADLYS 886 (953)
T ss_pred CCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhC-CcCCchhHHHH
Confidence 6778999999999999999999999999999999984 4555556554332 22222223333222 24888988875
Q ss_pred hhCCCCCCCCHHHHHHHHHHHHHHhhHH
Q 037859 419 NLMPKCDEDDTETCLKNLIEALKAAKEE 446 (504)
Q Consensus 419 ~l~~~~~~~~~~~~l~~li~al~~~~~~ 446 (504)
+ |-++++.|++++...
T Consensus 887 L------------CSdA~l~AikR~i~~ 902 (953)
T KOG0736|consen 887 L------------CSDAMLAAIKRTIHD 902 (953)
T ss_pred H------------HHHHHHHHHHHHHHH
Confidence 5 445666666655443
No 8
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=3.7e-32 Score=255.36 Aligned_cols=206 Identities=27% Similarity=0.424 Sum_probs=160.4
Q ss_pred eeeecCCCccccccccChhHHHHHHHhhcccccccCCCCCcHHHHHHHHHHhcCCcEEEEecccc-----C-ChHHHHHH
Q 037859 198 SHVFFEHPATFDTLAMETKKKEEIKKDLKKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTV-----Q-DNSELRSL 271 (504)
Q Consensus 198 ~~~~~~~p~~f~~~~~~~~~k~~i~~~l~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~-----~-~~~~l~~l 271 (504)
..+|..||..|+.+++.. |+|+|||||||||||.||+|+|.+..+.++.++.+.+ + +..-++.+
T Consensus 163 IeLPvKHPELF~aLGIaQ----------PKGvlLygppgtGktLlaraVahht~c~firvsgselvqk~igegsrmvrel 232 (404)
T KOG0728|consen 163 IELPVKHPELFEALGIAQ----------PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVREL 232 (404)
T ss_pred HhccccCHHHHHhcCCCC----------CcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHHhhhhHHHHHHH
Confidence 467999999999999998 9999999999999999999999999999999988764 2 33446777
Q ss_pred HHhcc--CCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccCCCceEE
Q 037859 272 LIDTS--SKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERII 349 (504)
Q Consensus 272 ~~~~~--~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~~~~iv 349 (504)
|.-+. .|+|||+||||++ |+.+. .++.+++.+-++++-.|||++||+.. ..++-+
T Consensus 233 fvmarehapsiifmdeidsi----gs~r~-----------------e~~~ggdsevqrtmlellnqldgfea--tknikv 289 (404)
T KOG0728|consen 233 FVMAREHAPSIIFMDEIDSI----GSSRV-----------------ESGSGGDSEVQRTMLELLNQLDGFEA--TKNIKV 289 (404)
T ss_pred HHHHHhcCCceEeeeccccc----ccccc-----------------cCCCCccHHHHHHHHHHHHhcccccc--ccceEE
Confidence 76654 7999999999996 33221 12345667788999999999999965 456889
Q ss_pred EEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCcCCcchHHHHhcCccCCCCCHHHHHHhhCCCCCCCCH
Q 037859 350 VFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDIDSHELYAVIESMPAETNMTPADVAENLMPKCDEDDT 429 (504)
Q Consensus 350 I~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~~~~~~~~~i~~l~~~~~~s~a~i~~~l~~~~~~~~~ 429 (504)
||+||+.+-|||||+||||+|++|+||.|+.++|..|++.+...-.. ..|+.-..|++..-.++..+..
T Consensus 290 imatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl-----------~rgi~l~kiaekm~gasgaevk 358 (404)
T KOG0728|consen 290 IMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNL-----------TRGINLRKIAEKMPGASGAEVK 358 (404)
T ss_pred EEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhch-----------hcccCHHHHHHhCCCCccchhh
Confidence 99999999999999999999999999999999999999877532111 1244444444444444444445
Q ss_pred HHHHHHHHHHHHHhhHHH
Q 037859 430 ETCLKNLIEALKAAKEEA 447 (504)
Q Consensus 430 ~~~l~~li~al~~~~~~~ 447 (504)
..|.++-+-|+++++-.-
T Consensus 359 ~vcteagm~alrerrvhv 376 (404)
T KOG0728|consen 359 GVCTEAGMYALRERRVHV 376 (404)
T ss_pred hhhhhhhHHHHHHhhccc
Confidence 566677777777665443
No 9
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6.6e-32 Score=291.36 Aligned_cols=196 Identities=28% Similarity=0.374 Sum_probs=162.5
Q ss_pred CccccccccChhHHHHHHHhh----------------cccccccCCCCCcHHHHHHHHHHhcCCcEEEEecccc------
Q 037859 205 PATFDTLAMETKKKEEIKKDL----------------KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTV------ 262 (504)
Q Consensus 205 p~~f~~~~~~~~~k~~i~~~l----------------~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~------ 262 (504)
+-+|++|++-++.|++|.+.+ |||+||+||||||||+||+|+|++.|.|++.++.+.+
T Consensus 307 ~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g 386 (774)
T KOG0731|consen 307 GVKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVG 386 (774)
T ss_pred CCccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhcc
Confidence 467999999999999988877 9999999999999999999999999999999988874
Q ss_pred CChHHHHHHHHhcc--CCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCcc
Q 037859 263 QDNSELRSLLIDTS--SKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLW 340 (504)
Q Consensus 263 ~~~~~l~~l~~~~~--~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~ 340 (504)
...++++.+|..+. .||||||||||++. ..+.. ....+++.+...++++||..|||+.
T Consensus 387 ~~asrvr~lf~~ar~~aP~iifideida~~----~~r~G----------------~~~~~~~~e~e~tlnQll~emDgf~ 446 (774)
T KOG0731|consen 387 VGASRVRDLFPLARKNAPSIIFIDEIDAVG----RKRGG----------------KGTGGGQDEREQTLNQLLVEMDGFE 446 (774)
T ss_pred cchHHHHHHHHHhhccCCeEEEeccccccc----ccccc----------------cccCCCChHHHHHHHHHHHHhcCCc
Confidence 25788999998875 69999999999963 22100 0123456667889999999999995
Q ss_pred ccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCcCCcc-hHHHHhcCccCC-CCCHHHHHH
Q 037859 341 SASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDIDSHE-LYAVIESMPAET-NMTPADVAE 418 (504)
Q Consensus 341 ~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~~~~~-~~~~i~~l~~~~-~~s~a~i~~ 418 (504)
+ +.++|++++||+++.||+||+||||||++|.++.|+...|..|++.|+...... ...++..++..+ |+++|||+.
T Consensus 447 ~--~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n 524 (774)
T KOG0731|consen 447 T--SKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLAN 524 (774)
T ss_pred C--CCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHh
Confidence 5 467999999999999999999999999999999999999999999998754332 222333455544 999999998
Q ss_pred hhCC
Q 037859 419 NLMP 422 (504)
Q Consensus 419 ~l~~ 422 (504)
++..
T Consensus 525 ~~ne 528 (774)
T KOG0731|consen 525 LCNE 528 (774)
T ss_pred hhhH
Confidence 7653
No 10
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.5e-32 Score=258.20 Aligned_cols=222 Identities=22% Similarity=0.332 Sum_probs=161.4
Q ss_pred eecccCCCCCccCccCccceeeecCCCccccccccChhHHHHHHHhhcccccccCCCCCcHHHHHHHHHHhcCCcEEEEe
Q 037859 179 KLYSNNPSKNWYGWRSTKWSHVFFEHPATFDTLAMETKKKEEIKKDLKKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLE 258 (504)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~w~~~~~~~p~~f~~~~~~~~~k~~i~~~l~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~ 258 (504)
..|...++...+...-..-.++|+.|...+..++++| |||+|||||||||||+|++|+|++....++.+.
T Consensus 152 vsy~diggld~qkqeireavelplt~~~ly~qigidp----------prgvllygppg~gktml~kava~~t~a~firvv 221 (408)
T KOG0727|consen 152 VSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDP----------PRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVV 221 (408)
T ss_pred ccccccccchhhHHHHHHHHhccchHHHHHHHhCCCC----------CcceEEeCCCCCcHHHHHHHHhhccchheeeec
Confidence 3455554443332211234467888888888888888 999999999999999999999999999999988
Q ss_pred cccc-----C-ChHHHHHHHHhc--cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHH
Q 037859 259 LTTV-----Q-DNSELRSLLIDT--SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLS 330 (504)
Q Consensus 259 ~~~~-----~-~~~~l~~l~~~~--~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls 330 (504)
.+.+ + +..-++.+|.-+ ..|+||||||||++.. +|-. ...+.+.+-++++-
T Consensus 222 gsefvqkylgegprmvrdvfrlakenapsiifideidaiat---krfd------------------aqtgadrevqril~ 280 (408)
T KOG0727|consen 222 GSEFVQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIAT---KRFD------------------AQTGADREVQRILI 280 (408)
T ss_pred cHHHHHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhh---hhcc------------------ccccccHHHHHHHH
Confidence 7764 2 344566666544 5799999999999742 2210 12345566788999
Q ss_pred HHhhhhcCccccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCcCCcchHHHHhcCc-cCC
Q 037859 331 GLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDIDSHELYAVIESMP-AET 409 (504)
Q Consensus 331 ~lL~~lDg~~~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~~~~~~~~~i~~l~-~~~ 409 (504)
.|||.|||+.. ..++-+||+||+.+.|||||+||||+|++|+||+|+..+++-++....+.-......+++.+. ...
T Consensus 281 ellnqmdgfdq--~~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpd 358 (408)
T KOG0727|consen 281 ELLNQMDGFDQ--TTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPD 358 (408)
T ss_pred HHHHhccCcCc--ccceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCcc
Confidence 99999999954 456899999999999999999999999999999999999988887765432211111223332 334
Q ss_pred CCCHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHhhH
Q 037859 410 NMTPADVAENLMPKCDEDDTETCLKNLIEALKAAKE 445 (504)
Q Consensus 410 ~~s~a~i~~~l~~~~~~~~~~~~l~~li~al~~~~~ 445 (504)
.+|+|+|..+ |.++-+.++++.+.
T Consensus 359 kis~adi~ai------------cqeagm~avr~nry 382 (408)
T KOG0727|consen 359 KISGADINAI------------CQEAGMLAVRENRY 382 (408)
T ss_pred ccchhhHHHH------------HHHHhHHHHHhcce
Confidence 7888888755 44555555555443
No 11
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.8e-32 Score=262.24 Aligned_cols=204 Identities=27% Similarity=0.437 Sum_probs=155.9
Q ss_pred eeeecCCCccccccccChhHHHHHHHhhcccccccCCCCCcHHHHHHHHHHhcCCcEEEEecccc-----CChHHH-HHH
Q 037859 198 SHVFFEHPATFDTLAMETKKKEEIKKDLKKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTV-----QDNSEL-RSL 271 (504)
Q Consensus 198 ~~~~~~~p~~f~~~~~~~~~k~~i~~~l~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~-----~~~~~l-~~l 271 (504)
..+|+.||..++.+++.| |+|++|||+||||||.||+|+||.....+..+-.+.+ ++..+| |.+
T Consensus 201 vELPLthPE~YeemGikp----------PKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylGdGpklvRql 270 (440)
T KOG0726|consen 201 VELPLTHPEYYEEMGIKP----------PKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVREL 270 (440)
T ss_pred hcCCCCCHHHHHHcCCCC----------CCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhccchHHHHHH
Confidence 468999999999999999 9999999999999999999999999888877755543 444444 556
Q ss_pred HHhc--cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccCCCceEE
Q 037859 272 LIDT--SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERII 349 (504)
Q Consensus 272 ~~~~--~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~~~~iv 349 (504)
|.-+ ..|||+||||||++ |..+- .+.+++..+-++++-.|||++||+.+ ++.+-|
T Consensus 271 F~vA~e~apSIvFiDEIdAi----GtKRy-----------------ds~SggerEiQrtmLELLNQldGFds--rgDvKv 327 (440)
T KOG0726|consen 271 FRVAEEHAPSIVFIDEIDAI----GTKRY-----------------DSNSGGEREIQRTMLELLNQLDGFDS--RGDVKV 327 (440)
T ss_pred HHHHHhcCCceEEeehhhhh----ccccc-----------------cCCCccHHHHHHHHHHHHHhccCccc--cCCeEE
Confidence 6544 47999999999996 33221 02345667788899999999999965 678999
Q ss_pred EEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCcCCcchHHHHhcCc-cCCCCCHHHHHHhhCCCCCCCC
Q 037859 350 VFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDIDSHELYAVIESMP-AETNMTPADVAENLMPKCDEDD 428 (504)
Q Consensus 350 I~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~~~~~~~~~i~~l~-~~~~~s~a~i~~~l~~~~~~~~ 428 (504)
||+||+.+.|||||+||||+|++|+|+.|+...++.||..+-..-.......++.+. ....+|+|||...
T Consensus 328 imATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAi--------- 398 (440)
T KOG0726|consen 328 IMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAI--------- 398 (440)
T ss_pred EEecccccccCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHH---------
Confidence 999999999999999999999999999999999999988765432111111123333 3448899998765
Q ss_pred HHHHHHHHHHHHHHhhHH
Q 037859 429 TETCLKNLIEALKAAKEE 446 (504)
Q Consensus 429 ~~~~l~~li~al~~~~~~ 446 (504)
|.++-+-|+++.+..
T Consensus 399 ---ctEaGllAlRerRm~ 413 (440)
T KOG0726|consen 399 ---CTEAGLLALRERRMK 413 (440)
T ss_pred ---HHHHhHHHHHHHHhh
Confidence 445555555555443
No 12
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.7e-31 Score=250.82 Aligned_cols=222 Identities=27% Similarity=0.354 Sum_probs=160.5
Q ss_pred hhhhHHhhhccceecccCCCCCccCccCccceeeecCCCccccccccChhHHHHHHHhhcccccccCCCCCcHHHHHHHH
Q 037859 167 GGKAITVKNRQRKLYSNNPSKNWYGWRSTKWSHVFFEHPATFDTLAMETKKKEEIKKDLKKGYLLYGPPGTGKSTMIAAM 246 (504)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~p~~f~~~~~~~~~k~~i~~~l~rg~LL~GPpGtGKTsla~ai 246 (504)
..+.|.+..+...-|...++..-+-..-....-+|+.|+..|+.+++.| |+|+|+|||||||||.+|+|.
T Consensus 156 rVkaMevDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~p----------PKGvLmYGPPGTGKTlmARAc 225 (424)
T KOG0652|consen 156 RVKAMEVDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRP----------PKGVLMYGPPGTGKTLMARAC 225 (424)
T ss_pred hcceeeeccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCC----------CCceEeeCCCCCcHHHHHHHH
Confidence 3444555555566676665432211000122357999999999999999 999999999999999999999
Q ss_pred HHhcCCcEEEEecccc-----CChHHH-HHHHHhc--cCCeEEEEecccccccccccccccccccccccccCcccccccc
Q 037859 247 ANFLNYDVYDLELTTV-----QDNSEL-RSLLIDT--SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKE 318 (504)
Q Consensus 247 A~~l~~~i~~l~~~~~-----~~~~~l-~~l~~~~--~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (504)
|...+..+..+-...+ +++..| +..|.-+ ..|+||||||+|++ |..+-. +.
T Consensus 226 AaqT~aTFLKLAgPQLVQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAI----GtKRfD-----------------Se 284 (424)
T KOG0652|consen 226 AAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAI----GTKRFD-----------------SE 284 (424)
T ss_pred HHhccchHHHhcchHHHhhhhcchHHHHHHHHHHhhccCCeEEEEechhhh----cccccc-----------------cc
Confidence 9998877665543332 344444 5555433 57999999999996 433211 12
Q ss_pred cCCCcchhhHHHHHhhhhcCccccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCcCCcch
Q 037859 319 DGGSKKSKVTLSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDIDSHEL 398 (504)
Q Consensus 319 ~~~~~~~~~~ls~lL~~lDg~~~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~~~~~~ 398 (504)
..++.+-++++-.|||.+||+.+ ...+-||++||+.+-|||||+|.||+|++|+||.|+.+.|.+|++.+...-....
T Consensus 285 k~GDREVQRTMLELLNQLDGFss--~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~ 362 (424)
T KOG0652|consen 285 KAGDREVQRTMLELLNQLDGFSS--DDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSD 362 (424)
T ss_pred ccccHHHHHHHHHHHHhhcCCCC--ccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCC
Confidence 34566778899999999999965 4668899999999999999999999999999999999999999998765432222
Q ss_pred HHHHhcCccCC-CCCHHHHHHhhC
Q 037859 399 YAVIESMPAET-NMTPADVAENLM 421 (504)
Q Consensus 399 ~~~i~~l~~~~-~~s~a~i~~~l~ 421 (504)
...++.++..+ +|.+|+....|.
T Consensus 363 DvNfeELaRsTddFNGAQcKAVcV 386 (424)
T KOG0652|consen 363 DVNFEELARSTDDFNGAQCKAVCV 386 (424)
T ss_pred CCCHHHHhhcccccCchhheeeeh
Confidence 22234455545 888888875544
No 13
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3e-30 Score=274.39 Aligned_cols=195 Identities=29% Similarity=0.396 Sum_probs=160.8
Q ss_pred CCccccccccChhHHHHHHHhh----------------cccccccCCCCCcHHHHHHHHHHhcCCcEEEEecccc-----
Q 037859 204 HPATFDTLAMETKKKEEIKKDL----------------KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTV----- 262 (504)
Q Consensus 204 ~p~~f~~~~~~~~~k~~i~~~l----------------~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~----- 262 (504)
...+|.++++.++.|+++.+-+ |+|+||+||||||||+||+|+|++.+.|++.++.++.
T Consensus 145 ~~v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfV 224 (596)
T COG0465 145 VKVTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFV 224 (596)
T ss_pred cCcChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhc
Confidence 3457999999999998776655 9999999999999999999999999999999998875
Q ss_pred -CChHHHHHHHHhcc--CCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCc
Q 037859 263 -QDNSELRSLLIDTS--SKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGL 339 (504)
Q Consensus 263 -~~~~~l~~l~~~~~--~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~ 339 (504)
.+.+++|.+|.++. .||||||||||++ |+.+.. +-.+++.+...++++||.+|||+
T Consensus 225 GvGAsRVRdLF~qAkk~aP~IIFIDEiDAv----Gr~Rg~-----------------g~GggnderEQTLNQlLvEmDGF 283 (596)
T COG0465 225 GVGASRVRDLFEQAKKNAPCIIFIDEIDAV----GRQRGA-----------------GLGGGNDEREQTLNQLLVEMDGF 283 (596)
T ss_pred CCCcHHHHHHHHHhhccCCCeEEEehhhhc----ccccCC-----------------CCCCCchHHHHHHHHHHhhhccC
Confidence 36789999999986 5999999999995 433210 12345566778999999999999
Q ss_pred cccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCcCCcchHHHHhcCccCC-CCCHHHHHH
Q 037859 340 WSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDIDSHELYAVIESMPAET-NMTPADVAE 418 (504)
Q Consensus 340 ~~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~~~~~~~~~i~~l~~~~-~~s~a~i~~ 418 (504)
.+ +.++|+|++||+++-|||||+||||||++|.++.|+...|++|++-+...........+..++..+ |+++|++.+
T Consensus 284 ~~--~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~n 361 (596)
T COG0465 284 GG--NEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLAN 361 (596)
T ss_pred CC--CCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhh
Confidence 63 466999999999999999999999999999999999999999999777554333222333355545 999999998
Q ss_pred hhC
Q 037859 419 NLM 421 (504)
Q Consensus 419 ~l~ 421 (504)
++.
T Consensus 362 l~N 364 (596)
T COG0465 362 LLN 364 (596)
T ss_pred hHH
Confidence 764
No 14
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.96 E-value=6.7e-30 Score=271.02 Aligned_cols=220 Identities=21% Similarity=0.266 Sum_probs=166.7
Q ss_pred CccccccccChhHHHHHHHhh--------------cccccccCCCCCcHHHHHHHHHHhcCCcEEEEecccc------CC
Q 037859 205 PATFDTLAMETKKKEEIKKDL--------------KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTV------QD 264 (504)
Q Consensus 205 p~~f~~~~~~~~~k~~i~~~l--------------~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~------~~ 264 (504)
..+|++|++-+.+|+.+.... ++|+|||||||||||++|+|+|++++.+++.++++.+ .+
T Consensus 224 ~~~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vGes 303 (489)
T CHL00195 224 NEKISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGES 303 (489)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccChH
Confidence 356999999998888776521 8999999999999999999999999999999998754 24
Q ss_pred hHHHHHHHHhc--cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCcccc
Q 037859 265 NSELRSLLIDT--SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSA 342 (504)
Q Consensus 265 ~~~l~~l~~~~--~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~ 342 (504)
...++++|..+ ..||||||||||.++...+ ..+........++.||..|++.
T Consensus 304 e~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~-----------------------~~~d~~~~~rvl~~lL~~l~~~--- 357 (489)
T CHL00195 304 ESRMRQMIRIAEALSPCILWIDEIDKAFSNSE-----------------------SKGDSGTTNRVLATFITWLSEK--- 357 (489)
T ss_pred HHHHHHHHHHHHhcCCcEEEehhhhhhhcccc-----------------------CCCCchHHHHHHHHHHHHHhcC---
Confidence 56788888754 4799999999999763111 0112234567888999988853
Q ss_pred CCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCcCCcc--hHHHHhcCccCC-CCCHHHHHHh
Q 037859 343 SGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDIDSHE--LYAVIESMPAET-NMTPADVAEN 419 (504)
Q Consensus 343 ~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~~~~~--~~~~i~~l~~~~-~~s~a~i~~~ 419 (504)
..+++||+|||+++.||||++||||||.+|+++.|+.++|..|++.|+...... ....+..++..+ |||+|||...
T Consensus 358 -~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~l 436 (489)
T CHL00195 358 -KSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQS 436 (489)
T ss_pred -CCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHH
Confidence 356899999999999999999999999999999999999999999998653221 122345556555 9999999987
Q ss_pred hCCCC---CCCCHHHHHHHHHHHHHHhhHHHHHhH
Q 037859 420 LMPKC---DEDDTETCLKNLIEALKAAKEEAIKKT 451 (504)
Q Consensus 420 l~~~~---~~~~~~~~l~~li~al~~~~~~~~~~~ 451 (504)
+..+. ..+......++++.+++...+......
T Consensus 437 v~eA~~~A~~~~~~lt~~dl~~a~~~~~Pls~~~~ 471 (489)
T CHL00195 437 IIEAMYIAFYEKREFTTDDILLALKQFIPLAQTEK 471 (489)
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHhcCCCcccCH
Confidence 65411 122234567777888877776544333
No 15
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.7e-30 Score=244.71 Aligned_cols=208 Identities=27% Similarity=0.408 Sum_probs=160.4
Q ss_pred ceeeecCCCccccccccChhHHHHHHHhhcccccccCCCCCcHHHHHHHHHHhcCCcEEEEecccc-----C-ChHHHHH
Q 037859 197 WSHVFFEHPATFDTLAMETKKKEEIKKDLKKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTV-----Q-DNSELRS 270 (504)
Q Consensus 197 w~~~~~~~p~~f~~~~~~~~~k~~i~~~l~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~-----~-~~~~l~~ 270 (504)
-.++|+.||..|-.++++| |+|+|||||||||||.+|+|+|+..+.-++.+-.+.+ + +..-++.
T Consensus 192 vve~pll~perfv~lgidp----------pkgvllygppgtgktl~aravanrtdacfirvigselvqkyvgegarmvre 261 (435)
T KOG0729|consen 192 VVELPLLHPERFVNLGIDP----------PKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRE 261 (435)
T ss_pred HHhccccCHHHHhhcCCCC----------CCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhhhhHHHHHH
Confidence 3467999999999999999 9999999999999999999999999998888765553 2 3345677
Q ss_pred HHHhcc--CCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccCCCceE
Q 037859 271 LLIDTS--SKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERI 348 (504)
Q Consensus 271 l~~~~~--~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~~~~i 348 (504)
+|.-+. ..||||+||||++- |.|-. .+.+++.+-++++-.|++++||+ ..++++-
T Consensus 262 lf~martkkaciiffdeidaig---garfd------------------dg~ggdnevqrtmleli~qldgf--dprgnik 318 (435)
T KOG0729|consen 262 LFEMARTKKACIIFFDEIDAIG---GARFD------------------DGAGGDNEVQRTMLELINQLDGF--DPRGNIK 318 (435)
T ss_pred HHHHhcccceEEEEeecccccc---Ccccc------------------CCCCCcHHHHHHHHHHHHhccCC--CCCCCeE
Confidence 776654 56999999999963 33321 23456677888999999999999 4567799
Q ss_pred EEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCc---CCcchHHHHhcCccCCCCCHHHHHHhhCCCCC
Q 037859 349 IVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDI---DSHELYAVIESMPAETNMTPADVAENLMPKCD 425 (504)
Q Consensus 349 vI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~---~~~~~~~~i~~l~~~~~~s~a~i~~~l~~~~~ 425 (504)
++|+||+|+.|||||+||||+|++++|++|+.+.|..|++.+-.. +....++.+..|. .+-|+|+|..
T Consensus 319 vlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlc--pnstgaeirs------- 389 (435)
T KOG0729|consen 319 VLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLC--PNSTGAEIRS------- 389 (435)
T ss_pred EEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhC--CCCcchHHHH-------
Confidence 999999999999999999999999999999999999998876532 2223344444443 3456666654
Q ss_pred CCCHHHHHHHHHHHHHHhhHHHHHhH
Q 037859 426 EDDTETCLKNLIEALKAAKEEAIKKT 451 (504)
Q Consensus 426 ~~~~~~~l~~li~al~~~~~~~~~~~ 451 (504)
.|.++-+-|++.+++...++.
T Consensus 390 -----vcteagmfairarrk~atekd 410 (435)
T KOG0729|consen 390 -----VCTEAGMFAIRARRKVATEKD 410 (435)
T ss_pred -----HHHHhhHHHHHHHhhhhhHHH
Confidence 456666666666655544433
No 16
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.5e-29 Score=264.11 Aligned_cols=170 Identities=24% Similarity=0.337 Sum_probs=141.3
Q ss_pred cccccccCCCCCcHHHHHHHHHHhcCCcEEEEecccc------CChHHHHHHHHhcc--CCeEEEEeccccccccccccc
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTV------QDNSELRSLLIDTS--SKSILVIEDIDCSLDLTGQRE 297 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~------~~~~~l~~l~~~~~--~~~Il~iDeiD~~~~~~~~~~ 297 (504)
+.|+|||||||||||.||.|+|...++.++.+....+ .++..+|.+|..+. .|||+|+||+|++.+.+|..
T Consensus 701 ~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhD- 779 (952)
T KOG0735|consen 701 RTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHD- 779 (952)
T ss_pred ccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCC-
Confidence 8899999999999999999999999999999876654 36678999998874 79999999999986533322
Q ss_pred ccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecC
Q 037859 298 KKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSY 377 (504)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~ 377 (504)
..+...+++++||.+|||..+. .++.|+++|.+|+.|||||+||||+|+.|+.+.
T Consensus 780 -----------------------sTGVTDRVVNQlLTelDG~Egl--~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~ 834 (952)
T KOG0735|consen 780 -----------------------STGVTDRVVNQLLTELDGAEGL--DGVYILAATSRPDLIDPALLRPGRLDKLVYCPL 834 (952)
T ss_pred -----------------------CCCchHHHHHHHHHhhcccccc--ceEEEEEecCCccccCHhhcCCCccceeeeCCC
Confidence 3345677999999999999764 559999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhcCcCCcchHHHHhcCccCC-CCCHHHHHHhhC
Q 037859 378 CCFEAFKVLAKNYLDIDSHELYAVIESMPAET-NMTPADVAENLM 421 (504)
Q Consensus 378 p~~e~~~~i~~~~l~~~~~~~~~~i~~l~~~~-~~s~a~i~~~l~ 421 (504)
|+..+|.+|++..-.....+...+++.++..+ |||+||++.++-
T Consensus 835 P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~ 879 (952)
T KOG0735|consen 835 PDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLY 879 (952)
T ss_pred CCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHH
Confidence 99999999998765433333334455666655 999999998765
No 17
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.2e-29 Score=249.68 Aligned_cols=189 Identities=26% Similarity=0.349 Sum_probs=147.3
Q ss_pred ccccccChhHHHHHHHhh----------------cccccccCCCCCcHHHHHHHHHHhcCCcEEEEecccc-----CChH
Q 037859 208 FDTLAMETKKKEEIKKDL----------------KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTV-----QDNS 266 (504)
Q Consensus 208 f~~~~~~~~~k~~i~~~l----------------~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~-----~~~~ 266 (504)
++++++-.+.|+-|.+.+ -+|+|++||||||||+||+|+|.+++..++.++.+.+ +..+
T Consensus 211 W~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSKwRGeSE 290 (491)
T KOG0738|consen 211 WDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKWRGESE 290 (491)
T ss_pred hHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhhhccchH
Confidence 455566666666666555 4899999999999999999999999999999988766 3456
Q ss_pred HHHHHHHhcc---CCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccC
Q 037859 267 ELRSLLIDTS---SKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSAS 343 (504)
Q Consensus 267 ~l~~l~~~~~---~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~ 343 (504)
+|.+++.+.. .|++|||||||+++. +| ++++.+..+++.-+.||.+|||+....
T Consensus 291 KlvRlLFemARfyAPStIFiDEIDslcs---~R--------------------G~s~EHEaSRRvKsELLvQmDG~~~t~ 347 (491)
T KOG0738|consen 291 KLVRLLFEMARFYAPSTIFIDEIDSLCS---QR--------------------GGSSEHEASRRVKSELLVQMDGVQGTL 347 (491)
T ss_pred HHHHHHHHHHHHhCCceeehhhHHHHHh---cC--------------------CCccchhHHHHHHHHHHHHhhcccccc
Confidence 6777766654 799999999999863 33 234456778899999999999997543
Q ss_pred CC-c-eEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCcCCcchHHHHhcCccCC-CCCHHHHHHhh
Q 037859 344 GE-E-RIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDIDSHELYAVIESMPAET-NMTPADVAENL 420 (504)
Q Consensus 344 ~~-~-~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~~~~~~~~~i~~l~~~~-~~s~a~i~~~l 420 (504)
.. . ++|+++||.|+.||+||+| ||...|++|+|+.+.|+.|++..|..........++.+++.. |||++||...|
T Consensus 348 e~~k~VmVLAATN~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvC 425 (491)
T KOG0738|consen 348 ENSKVVMVLAATNFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVC 425 (491)
T ss_pred ccceeEEEEeccCCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHH
Confidence 22 2 5677899999999999999 999999999999999999999998653322222234445444 99999998665
Q ss_pred C
Q 037859 421 M 421 (504)
Q Consensus 421 ~ 421 (504)
.
T Consensus 426 r 426 (491)
T KOG0738|consen 426 R 426 (491)
T ss_pred H
Confidence 4
No 18
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.96 E-value=2e-29 Score=238.32 Aligned_cols=190 Identities=25% Similarity=0.330 Sum_probs=152.7
Q ss_pred CccccccccChhHHH---HHHHhh----------cccccccCCCCCcHHHHHHHHHHhcCCcEEEEecccc-----C-Ch
Q 037859 205 PATFDTLAMETKKKE---EIKKDL----------KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTV-----Q-DN 265 (504)
Q Consensus 205 p~~f~~~~~~~~~k~---~i~~~l----------~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~-----~-~~ 265 (504)
..+|++|+++++.|+ -|++.+ |+.+|||||||||||++|+|+|++.+.|++.+..+.+ + +.
T Consensus 117 ~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGdga 196 (368)
T COG1223 117 DITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGA 196 (368)
T ss_pred cccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhhHH
Confidence 346999999998874 344555 9999999999999999999999999999999988875 2 34
Q ss_pred HHHHHHHHhcc--CCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccC
Q 037859 266 SELRSLLIDTS--SKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSAS 343 (504)
Q Consensus 266 ~~l~~l~~~~~--~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~ 343 (504)
..++.++..+. .|||+||||+|++. ..++-+ .-.+.-..+++.||..|||+. .
T Consensus 197 r~Ihely~rA~~~aPcivFiDE~DAia--LdRryQ---------------------elRGDVsEiVNALLTelDgi~--e 251 (368)
T COG1223 197 RRIHELYERARKAAPCIVFIDELDAIA--LDRRYQ---------------------ELRGDVSEIVNALLTELDGIK--E 251 (368)
T ss_pred HHHHHHHHHHHhcCCeEEEehhhhhhh--hhhhHH---------------------HhcccHHHHHHHHHHhccCcc--c
Confidence 56888887764 79999999999973 122110 011223458999999999995 5
Q ss_pred CCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCcCCcchHHHHhcCccCC-CCCHHHHHHhhC
Q 037859 344 GEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDIDSHELYAVIESMPAET-NMTPADVAENLM 421 (504)
Q Consensus 344 ~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~~~~~~~~~i~~l~~~~-~~s~a~i~~~l~ 421 (504)
+++++.|++||+++.||||+.. ||...|+|.+|+.++|..|++.|...-..+....++.++..+ |+|++||.+.++
T Consensus 252 neGVvtIaaTN~p~~LD~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvl 328 (368)
T COG1223 252 NEGVVTIAATNRPELLDPAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVL 328 (368)
T ss_pred CCceEEEeecCChhhcCHHHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHH
Confidence 6789999999999999999999 999999999999999999999998655444444455555555 999999998776
No 19
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.96 E-value=4.7e-29 Score=259.29 Aligned_cols=190 Identities=24% Similarity=0.393 Sum_probs=145.7
Q ss_pred eeecCCCccccccccChhHHHHHHHhhcccccccCCCCCcHHHHHHHHHHhcCCcEEEEecccc-----C-ChHHHHHHH
Q 037859 199 HVFFEHPATFDTLAMETKKKEEIKKDLKKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTV-----Q-DNSELRSLL 272 (504)
Q Consensus 199 ~~~~~~p~~f~~~~~~~~~k~~i~~~l~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~-----~-~~~~l~~l~ 272 (504)
..|+.||..|..+++.+ ++|+|||||||||||++|+++|++++.+++.+..+.+ + +...++.+|
T Consensus 162 ~~pl~~~~~~~~~Gl~~----------pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k~~ge~~~~lr~lf 231 (398)
T PTZ00454 162 ELPLTCPELYEQIGIDP----------PRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKYLGEGPRMVRDVF 231 (398)
T ss_pred HHHhcCHHHHHhcCCCC----------CceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHHhcchhHHHHHHHH
Confidence 35777777777777777 8999999999999999999999999999998876543 1 234567777
Q ss_pred Hhc--cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccCCCceEEE
Q 037859 273 IDT--SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERIIV 350 (504)
Q Consensus 273 ~~~--~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~~~~ivI 350 (504)
..+ ..||||||||||+++. ++.. ...+.+......+..||+.+||+.. ..+++||
T Consensus 232 ~~A~~~~P~ILfIDEID~i~~---~r~~------------------~~~~~d~~~~r~l~~LL~~ld~~~~--~~~v~VI 288 (398)
T PTZ00454 232 RLARENAPSIIFIDEVDSIAT---KRFD------------------AQTGADREVQRILLELLNQMDGFDQ--TTNVKVI 288 (398)
T ss_pred HHHHhcCCeEEEEECHhhhcc---cccc------------------ccCCccHHHHHHHHHHHHHhhccCC--CCCEEEE
Confidence 554 4799999999999752 2210 0111223455688999999999854 3458999
Q ss_pred EecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCcCCcchHHHHhcCccCC-CCCHHHHHHhhC
Q 037859 351 FTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDIDSHELYAVIESMPAET-NMTPADVAENLM 421 (504)
Q Consensus 351 ~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~~~~~~~~~i~~l~~~~-~~s~a~i~~~l~ 421 (504)
+|||+++.||||++||||||.+|+|++|+.++|..|++.++.........++..++..+ |+|++||..++.
T Consensus 289 ~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~ 360 (398)
T PTZ00454 289 MATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQ 360 (398)
T ss_pred EecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999987643322122234444444 999999987654
No 20
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.95 E-value=1.8e-28 Score=263.88 Aligned_cols=217 Identities=27% Similarity=0.377 Sum_probs=164.5
Q ss_pred CCccccccccChhHHHHHHHhh----------------cccccccCCCCCcHHHHHHHHHHhcCCcEEEEecccc-----
Q 037859 204 HPATFDTLAMETKKKEEIKKDL----------------KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTV----- 262 (504)
Q Consensus 204 ~p~~f~~~~~~~~~k~~i~~~l----------------~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~----- 262 (504)
...+|+++++.++.|+++.+.+ ++|+|||||||||||++|+++|++++.+++.++.+.+
T Consensus 50 ~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~ 129 (495)
T TIGR01241 50 PKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFV 129 (495)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHHh
Confidence 3557999999999887766543 7899999999999999999999999999999987654
Q ss_pred -CChHHHHHHHHhc--cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCc
Q 037859 263 -QDNSELRSLLIDT--SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGL 339 (504)
Q Consensus 263 -~~~~~l~~l~~~~--~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~ 339 (504)
.+...++.+|..+ ..||||||||||.++...+.. ..+.......++++||+.|||+
T Consensus 130 g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~---------------------~~~~~~~~~~~~~~lL~~~d~~ 188 (495)
T TIGR01241 130 GVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAG---------------------LGGGNDEREQTLNQLLVEMDGF 188 (495)
T ss_pred cccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccC---------------------cCCccHHHHHHHHHHHhhhccc
Confidence 2446788888776 468999999999975211110 0112334457899999999998
Q ss_pred cccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCcCCcchHHHHhcCccCC-CCCHHHHHH
Q 037859 340 WSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDIDSHELYAVIESMPAET-NMTPADVAE 418 (504)
Q Consensus 340 ~~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~~~~~~~~~i~~l~~~~-~~s~a~i~~ 418 (504)
.+ .++++||+|||+++.|||||+||||||.+|+++.|+.++|.+|++.++..........+..++..+ |+|++||..
T Consensus 189 ~~--~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~ 266 (495)
T TIGR01241 189 GT--NTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLAN 266 (495)
T ss_pred cC--CCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHH
Confidence 54 456899999999999999999999999999999999999999999998654332223344555544 999999998
Q ss_pred hhCCC----CCCCCHHHHHHHHHHHHHHh
Q 037859 419 NLMPK----CDEDDTETCLKNLIEALKAA 443 (504)
Q Consensus 419 ~l~~~----~~~~~~~~~l~~li~al~~~ 443 (504)
++..+ ........+.+++..+++..
T Consensus 267 l~~eA~~~a~~~~~~~i~~~~l~~a~~~~ 295 (495)
T TIGR01241 267 LLNEAALLAARKNKTEITMNDIEEAIDRV 295 (495)
T ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 76531 11122334556666666654
No 21
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.95 E-value=3e-28 Score=273.51 Aligned_cols=190 Identities=24% Similarity=0.326 Sum_probs=150.1
Q ss_pred cccccccChhHHHHHHHhh-----------------cccccccCCCCCcHHHHHHHHHHhcCCcEEEEecccc------C
Q 037859 207 TFDTLAMETKKKEEIKKDL-----------------KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTV------Q 263 (504)
Q Consensus 207 ~f~~~~~~~~~k~~i~~~l-----------------~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~------~ 263 (504)
.|+++++.+..|+.+.+.+ ++|+|||||||||||++|+++|++++.+++.++.+.+ .
T Consensus 451 ~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGe 530 (733)
T TIGR01243 451 RWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGE 530 (733)
T ss_pred chhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCc
Confidence 5677777777777666544 7899999999999999999999999999999987654 2
Q ss_pred ChHHHHHHHHhc--cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccc
Q 037859 264 DNSELRSLLIDT--SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWS 341 (504)
Q Consensus 264 ~~~~l~~l~~~~--~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~ 341 (504)
+...++.+|..+ ..||||||||||.+++..+. ..........+++||..|||+..
T Consensus 531 se~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~-----------------------~~~~~~~~~~~~~lL~~ldg~~~ 587 (733)
T TIGR01243 531 SEKAIREIFRKARQAAPAIIFFDEIDAIAPARGA-----------------------RFDTSVTDRIVNQLLTEMDGIQE 587 (733)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCC-----------------------CCCccHHHHHHHHHHHHhhcccC
Confidence 456788888776 46899999999998642211 11223456789999999999854
Q ss_pred cCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCcCCcchHHHHhcCccCC-CCCHHHHHHhh
Q 037859 342 ASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDIDSHELYAVIESMPAET-NMTPADVAENL 420 (504)
Q Consensus 342 ~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~~~~~~~~~i~~l~~~~-~~s~a~i~~~l 420 (504)
..+++||+|||+++.||||++||||||.+|++++|+.++|..|++.++.........++..++..+ |+|++||..++
T Consensus 588 --~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~ 665 (733)
T TIGR01243 588 --LSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVC 665 (733)
T ss_pred --CCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHH
Confidence 456999999999999999999999999999999999999999999887654332222344555544 99999998765
Q ss_pred C
Q 037859 421 M 421 (504)
Q Consensus 421 ~ 421 (504)
.
T Consensus 666 ~ 666 (733)
T TIGR01243 666 R 666 (733)
T ss_pred H
Confidence 3
No 22
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.95 E-value=6.1e-28 Score=251.70 Aligned_cols=173 Identities=28% Similarity=0.339 Sum_probs=132.8
Q ss_pred cccccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccC------ChHHHHHHHHhc--cCCeEEEEeccccccccccccc
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQ------DNSELRSLLIDT--SSKSILVIEDIDCSLDLTGQRE 297 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~------~~~~l~~l~~~~--~~~~Il~iDeiD~~~~~~~~~~ 297 (504)
++|+|||||||||||++|+++|++++.+++.++++.+. +...++.+|..+ ..||||||||||.++. .+.
T Consensus 165 p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~---~r~ 241 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAA---KRT 241 (389)
T ss_pred CCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhc---ccc
Confidence 88999999999999999999999999999999887652 234566677655 3689999999999753 221
Q ss_pred ccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecC
Q 037859 298 KKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSY 377 (504)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~ 377 (504)
. ...++......++..||+.+||+.. ..+++||+|||+++.||+||+||||||..|+|+.
T Consensus 242 ~------------------~~~~~~~~~~~~l~~lL~~ld~~~~--~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~ 301 (389)
T PRK03992 242 D------------------SGTSGDREVQRTLMQLLAEMDGFDP--RGNVKIIAATNRIDILDPAILRPGRFDRIIEVPL 301 (389)
T ss_pred c------------------CCCCccHHHHHHHHHHHHhccccCC--CCCEEEEEecCChhhCCHHHcCCccCceEEEECC
Confidence 0 0111223345678899999999843 4568999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhcCcCCcchHHHHhcCccC-CCCCHHHHHHhhC
Q 037859 378 CCFEAFKVLAKNYLDIDSHELYAVIESMPAE-TNMTPADVAENLM 421 (504)
Q Consensus 378 p~~e~~~~i~~~~l~~~~~~~~~~i~~l~~~-~~~s~a~i~~~l~ 421 (504)
|+.++|..|++.++..........+..++.. .|++++||..++.
T Consensus 302 P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~ 346 (389)
T PRK03992 302 PDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICT 346 (389)
T ss_pred CCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHH
Confidence 9999999999998864322111123344443 4999999986644
No 23
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.95 E-value=3.4e-28 Score=278.68 Aligned_cols=167 Identities=17% Similarity=0.142 Sum_probs=127.7
Q ss_pred cccccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccCC-----------------------------------------
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQD----------------------------------------- 264 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~----------------------------------------- 264 (504)
|||+||+||||||||.||+|+|++.+.|++.++++.+..
T Consensus 1630 PKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~n~~~ 1709 (2281)
T CHL00206 1630 SRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMMNALT 1709 (2281)
T ss_pred CCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhcchhh
Confidence 899999999999999999999999999999998765421
Q ss_pred --------hHHHHHHHHhc--cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhh
Q 037859 265 --------NSELRSLLIDT--SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLN 334 (504)
Q Consensus 265 --------~~~l~~l~~~~--~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~ 334 (504)
...++.+|..+ .+||||+|||||++.. + .....++++||+
T Consensus 1710 ~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~----~--------------------------ds~~ltL~qLLn 1759 (2281)
T CHL00206 1710 MDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNV----N--------------------------ESNYLSLGLLVN 1759 (2281)
T ss_pred hhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCC----C--------------------------ccceehHHHHHH
Confidence 01256677665 4799999999999731 1 112346899999
Q ss_pred hhcCccc-cCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCc---CCcchHHHHhcCccCC-
Q 037859 335 FIDGLWS-ASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDI---DSHELYAVIESMPAET- 409 (504)
Q Consensus 335 ~lDg~~~-~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~---~~~~~~~~i~~l~~~~- 409 (504)
.|||... ....+++||+|||+|+.|||||+||||||++|+++.|+..+|+.++...+.. ........+..++..+
T Consensus 1760 eLDg~~~~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~ 1839 (2281)
T CHL00206 1760 SLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITM 1839 (2281)
T ss_pred HhccccccCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCC
Confidence 9998742 2345689999999999999999999999999999999999998887754211 1111111234455545
Q ss_pred CCCHHHHHHhhCC
Q 037859 410 NMTPADVAENLMP 422 (504)
Q Consensus 410 ~~s~a~i~~~l~~ 422 (504)
|+|+|||+.++-.
T Consensus 1840 GfSGADLanLvNE 1852 (2281)
T CHL00206 1840 GSNARDLVALTNE 1852 (2281)
T ss_pred CCCHHHHHHHHHH
Confidence 9999999987543
No 24
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.95 E-value=1.6e-27 Score=252.73 Aligned_cols=186 Identities=26% Similarity=0.390 Sum_probs=133.3
Q ss_pred ccccccccChhHHHHHHHhh-----------------cccccccCCCCCcHHHHHHHHHHhcCCc--------EEEEecc
Q 037859 206 ATFDTLAMETKKKEEIKKDL-----------------KKGYLLYGPPGTGKSTMIAAMANFLNYD--------VYDLELT 260 (504)
Q Consensus 206 ~~f~~~~~~~~~k~~i~~~l-----------------~rg~LL~GPpGtGKTsla~aiA~~l~~~--------i~~l~~~ 260 (504)
.+|+++++-+.++++|.+.+ |+|+|||||||||||++|+++|++++.+ .+.+++.
T Consensus 179 v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~ 258 (512)
T TIGR03689 179 VTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIK 258 (512)
T ss_pred CCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEecc
Confidence 45666665555555555543 8999999999999999999999999765 2333322
Q ss_pred --cc------CChHHHHHHHHhcc------CCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchh
Q 037859 261 --TV------QDNSELRSLLIDTS------SKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSK 326 (504)
Q Consensus 261 --~~------~~~~~l~~l~~~~~------~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (504)
.+ .....++.+|..+. .||||||||||+++...+. ........
T Consensus 259 ~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~-----------------------~~s~d~e~ 315 (512)
T TIGR03689 259 GPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGS-----------------------GVSSDVET 315 (512)
T ss_pred chhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCC-----------------------CccchHHH
Confidence 21 12345666665542 5899999999998632111 01112235
Q ss_pred hHHHHHhhhhcCccccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCcCCcchHHHHhcCc
Q 037859 327 VTLSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDIDSHELYAVIESMP 406 (504)
Q Consensus 327 ~~ls~lL~~lDg~~~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~~~~~~~~~i~~l~ 406 (504)
..+++||+.|||+.+. ++++||+|||+++.|||||+||||||.+|+|++|+.++++.|++.|+...- ++...+ .
T Consensus 316 ~il~~LL~~LDgl~~~--~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l-~l~~~l---~ 389 (512)
T TIGR03689 316 TVVPQLLSELDGVESL--DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSL-PLDADL---A 389 (512)
T ss_pred HHHHHHHHHhcccccC--CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccC-CchHHH---H
Confidence 6789999999999653 569999999999999999999999999999999999999999999986431 222222 2
Q ss_pred cCCCCCHHHHHHhh
Q 037859 407 AETNMTPADVAENL 420 (504)
Q Consensus 407 ~~~~~s~a~i~~~l 420 (504)
...|.+.+++..++
T Consensus 390 ~~~g~~~a~~~al~ 403 (512)
T TIGR03689 390 EFDGDREATAAALI 403 (512)
T ss_pred HhcCCCHHHHHHHH
Confidence 23466666665543
No 25
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.95 E-value=4e-27 Score=235.96 Aligned_cols=157 Identities=18% Similarity=0.170 Sum_probs=121.6
Q ss_pred cccccccCCCCCcHHHHHHHHHHhcCCcEEEEecccc------CChHHHHHHHHhcc-------CCeEEEEecccccccc
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTV------QDNSELRSLLIDTS-------SKSILVIEDIDCSLDL 292 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~------~~~~~l~~l~~~~~-------~~~Il~iDeiD~~~~~ 292 (504)
|+|++||||||||||++|+|+|++++.+++.++...+ +++..++.+|..+. +||||||||||++++
T Consensus 148 PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g- 226 (413)
T PLN00020 148 PLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAG- 226 (413)
T ss_pred CeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCC-
Confidence 8999999999999999999999999999999998876 24577899997663 699999999999763
Q ss_pred cccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCc--------c--ccCCCceEEEEecCCCCCCChh
Q 037859 293 TGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGL--------W--SASGEERIIVFTTNYVDKLDPA 362 (504)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~--------~--~~~~~~~ivI~tTN~~e~Ld~A 362 (504)
++. ........+.+..+||+.+|+. | ......++||+|||+++.||||
T Consensus 227 --~r~--------------------~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpA 284 (413)
T PLN00020 227 --RFG--------------------TTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAP 284 (413)
T ss_pred --CCC--------------------CCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHh
Confidence 221 1112223455568999998863 3 1224568899999999999999
Q ss_pred hhcCCCceeEEEecCCCHHHHHHHHHHhcCcCCcchHHHHhcCccC
Q 037859 363 LIRRGRMDKHIEMSYCCFEAFKVLAKNYLDIDSHELYAVIESMPAE 408 (504)
Q Consensus 363 LlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~~~~~~~~~i~~l~~~ 408 (504)
|+||||||..+ ..|+.++|..|++.++...... ..++.+++..
T Consensus 285 LlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~ 327 (413)
T PLN00020 285 LIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVS-REDVVKLVDT 327 (413)
T ss_pred HcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCC-HHHHHHHHHc
Confidence 99999999865 5899999999999988654332 2444445443
No 26
>CHL00176 ftsH cell division protein; Validated
Probab=99.95 E-value=1.9e-27 Score=259.78 Aligned_cols=218 Identities=28% Similarity=0.363 Sum_probs=164.9
Q ss_pred CCCccccccccChhHHHHHHHhh----------------cccccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccC---
Q 037859 203 EHPATFDTLAMETKKKEEIKKDL----------------KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQ--- 263 (504)
Q Consensus 203 ~~p~~f~~~~~~~~~k~~i~~~l----------------~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~--- 263 (504)
....+|+++++.++.|+++.+.+ ++|+|||||||||||++|+++|++++.+++.++++.+.
T Consensus 177 ~~~~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~ 256 (638)
T CHL00176 177 DTGITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMF 256 (638)
T ss_pred CCCCCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHh
Confidence 34567999999998887766554 67999999999999999999999999999999887642
Q ss_pred ---ChHHHHHHHHhcc--CCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcC
Q 037859 264 ---DNSELRSLLIDTS--SKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDG 338 (504)
Q Consensus 264 ---~~~~l~~l~~~~~--~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg 338 (504)
....++.+|..+. .||||||||||++....+.. ..+++.....+++.||..|||
T Consensus 257 ~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~---------------------~~~~~~e~~~~L~~LL~~~dg 315 (638)
T CHL00176 257 VGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAG---------------------IGGGNDEREQTLNQLLTEMDG 315 (638)
T ss_pred hhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCC---------------------CCCCcHHHHHHHHHHHhhhcc
Confidence 3456788887764 68999999999975321110 112334456789999999999
Q ss_pred ccccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCcCCcchHHHHhcCccCC-CCCHHHHH
Q 037859 339 LWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDIDSHELYAVIESMPAET-NMTPADVA 417 (504)
Q Consensus 339 ~~~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~~~~~~~~~i~~l~~~~-~~s~a~i~ 417 (504)
+.. ..+++||+|||+++.|||||+||||||.+|.++.|+.++|..|++.++..........+..++..+ |+|++||.
T Consensus 316 ~~~--~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~ 393 (638)
T CHL00176 316 FKG--NKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLA 393 (638)
T ss_pred ccC--CCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHH
Confidence 854 456899999999999999999999999999999999999999999998764333333455666655 99999999
Q ss_pred HhhCCC----CCCCCHHHHHHHHHHHHHHh
Q 037859 418 ENLMPK----CDEDDTETCLKNLIEALKAA 443 (504)
Q Consensus 418 ~~l~~~----~~~~~~~~~l~~li~al~~~ 443 (504)
.++... ........+.+++..++.+.
T Consensus 394 ~lvneAal~a~r~~~~~It~~dl~~Ai~rv 423 (638)
T CHL00176 394 NLLNEAAILTARRKKATITMKEIDTAIDRV 423 (638)
T ss_pred HHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Confidence 776531 11222233445555555443
No 27
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.95 E-value=8.9e-28 Score=251.38 Aligned_cols=189 Identities=28% Similarity=0.403 Sum_probs=143.5
Q ss_pred eeecCCCccccccccChhHHHHHHHhhcccccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccC------ChHHHHHHH
Q 037859 199 HVFFEHPATFDTLAMETKKKEEIKKDLKKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQ------DNSELRSLL 272 (504)
Q Consensus 199 ~~~~~~p~~f~~~~~~~~~k~~i~~~l~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~------~~~~l~~l~ 272 (504)
..|+.||..|+.+.+.+ ++|+|||||||||||++|+++|++++.+++.+..+.+. +...++.+|
T Consensus 200 ~lpl~~p~~~~~~gi~~----------p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k~~Ge~~~~vr~lF 269 (438)
T PTZ00361 200 ELPLTHPELYDDIGIKP----------PKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGPKLVRELF 269 (438)
T ss_pred HhhhhCHHHHHhcCCCC----------CcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhhhcchHHHHHHHHH
Confidence 45777777777777776 89999999999999999999999999999988776652 223466676
Q ss_pred Hhc--cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccCCCceEEE
Q 037859 273 IDT--SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERIIV 350 (504)
Q Consensus 273 ~~~--~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~~~~ivI 350 (504)
..+ ..||||||||||.++. ++.. ...++......++..||+.+||+.. ..++.||
T Consensus 270 ~~A~~~~P~ILfIDEID~l~~---kR~~------------------~~sgg~~e~qr~ll~LL~~Ldg~~~--~~~V~VI 326 (438)
T PTZ00361 270 RVAEENAPSIVFIDEIDAIGT---KRYD------------------ATSGGEKEIQRTMLELLNQLDGFDS--RGDVKVI 326 (438)
T ss_pred HHHHhCCCcEEeHHHHHHHhc---cCCC------------------CCCcccHHHHHHHHHHHHHHhhhcc--cCCeEEE
Confidence 554 4789999999999752 2210 0122333455678899999999853 4568999
Q ss_pred EecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCcCCcchHHHHhcCcc-CCCCCHHHHHHhh
Q 037859 351 FTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDIDSHELYAVIESMPA-ETNMTPADVAENL 420 (504)
Q Consensus 351 ~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~~~~~~~~~i~~l~~-~~~~s~a~i~~~l 420 (504)
+|||+++.||||++||||||.+|+|+.|+.++|..|++.++..........+..++. ..++|+|||..+|
T Consensus 327 ~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~ 397 (438)
T PTZ00361 327 MATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAIC 397 (438)
T ss_pred EecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999875432211112333343 3499999998653
No 28
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=3e-27 Score=228.69 Aligned_cols=216 Identities=23% Similarity=0.342 Sum_probs=162.8
Q ss_pred ceeeecCCCccccccccChhHHHHHHHhhcccccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccC------ChHHHHH
Q 037859 197 WSHVFFEHPATFDTLAMETKKKEEIKKDLKKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQ------DNSELRS 270 (504)
Q Consensus 197 w~~~~~~~p~~f~~~~~~~~~k~~i~~~l~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~------~~~~l~~ 270 (504)
-..+|+.+|..|-.+.+.+ |+|+|||||||||||.+|+++|..++.+++.+..+.+. ...-+|.
T Consensus 147 ~ielpl~np~lf~rvgIk~----------Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGEsaRlIRe 216 (388)
T KOG0651|consen 147 VIELPLTNPELFLRVGIKP----------PKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGESARLIRD 216 (388)
T ss_pred heEeeccCchhccccCCCC----------CceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcccHHHHHHH
Confidence 4578999999999999999 99999999999999999999999999999998887763 2234567
Q ss_pred HHHhcc--CCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccCCCceE
Q 037859 271 LLIDTS--SKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERI 348 (504)
Q Consensus 271 l~~~~~--~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~~~~i 348 (504)
.|..+. .||||||||||++. |++.. .+...+..-+.||-.|||.|||+... +.+-
T Consensus 217 mf~yA~~~~pciifmdeiDAig---GRr~s------------------e~Ts~dreiqrTLMeLlnqmdgfd~l--~rVk 273 (388)
T KOG0651|consen 217 MFRYAREVIPCIIFMDEIDAIG---GRRFS------------------EGTSSDREIQRTLMELLNQMDGFDTL--HRVK 273 (388)
T ss_pred HHHHHhhhCceEEeehhhhhhc---cEEec------------------cccchhHHHHHHHHHHHHhhccchhc--cccc
Confidence 776665 68999999999963 44421 12234456678999999999999654 4488
Q ss_pred EEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCc-CC--cchHHHHhcCccCCCCCHHHHHHhhCCC--
Q 037859 349 IVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDI-DS--HELYAVIESMPAETNMTPADVAENLMPK-- 423 (504)
Q Consensus 349 vI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~-~~--~~~~~~i~~l~~~~~~s~a~i~~~l~~~-- 423 (504)
+|||||+++.|||||+||||+|+.+++|.|+...|..|++.+-.. +. .-.++.+-++. .++.++|+...+...
T Consensus 274 ~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~--d~f~gad~rn~~tEag~ 351 (388)
T KOG0651|consen 274 TIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLV--DGFNGADLRNVCTEAGM 351 (388)
T ss_pred EEEecCCccccchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHH--hccChHHHhhhcccccc
Confidence 999999999999999999999999999999999998887755422 11 22244444443 478889987766542
Q ss_pred --CCCCCHHHHHHHHHHHHHHhhHHH
Q 037859 424 --CDEDDTETCLKNLIEALKAAKEEA 447 (504)
Q Consensus 424 --~~~~~~~~~l~~li~al~~~~~~~ 447 (504)
...+......++++.++++....+
T Consensus 352 Fa~~~~~~~vl~Ed~~k~vrk~~~~k 377 (388)
T KOG0651|consen 352 FAIPEERDEVLHEDFMKLVRKQADAK 377 (388)
T ss_pred cccchhhHHHhHHHHHHHHHHHHHHH
Confidence 122233445566666666555443
No 29
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.2e-27 Score=228.16 Aligned_cols=182 Identities=26% Similarity=0.358 Sum_probs=149.2
Q ss_pred cccccChhHHHHHHHhh----------------cccccccCCCCCcHHHHHHHHHHhcCCcEEEEecccc-----CChHH
Q 037859 209 DTLAMETKKKEEIKKDL----------------KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTV-----QDNSE 267 (504)
Q Consensus 209 ~~~~~~~~~k~~i~~~l----------------~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~-----~~~~~ 267 (504)
++|++-+..|+.+.+.+ -||+|||||||||||.||+|+|.+.+-.++.++.+++ +..+.
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGESEk 212 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEK 212 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccHHH
Confidence 34566667777777665 4899999999999999999999999999999988765 33344
Q ss_pred -HHHHHHhc--cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccCC
Q 037859 268 -LRSLLIDT--SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASG 344 (504)
Q Consensus 268 -l~~l~~~~--~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~ 344 (504)
++++|.-+ ..|+||||||||.++ |+|. .+.+..++++-..||.+|.|+-. ..
T Consensus 213 LVknLFemARe~kPSIIFiDEiDslc---g~r~---------------------enEseasRRIKTEfLVQMqGVG~-d~ 267 (439)
T KOG0739|consen 213 LVKNLFEMARENKPSIIFIDEIDSLC---GSRS---------------------ENESEASRRIKTEFLVQMQGVGN-DN 267 (439)
T ss_pred HHHHHHHHHHhcCCcEEEeehhhhhc---cCCC---------------------CCchHHHHHHHHHHHHhhhcccc-CC
Confidence 45666554 479999999999875 4442 23345567888999999999853 45
Q ss_pred CceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCcCCcchHH-HHhcCccCC-CCCHHHHH
Q 037859 345 EERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDIDSHELYA-VIESMPAET-NMTPADVA 417 (504)
Q Consensus 345 ~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~~~~~~~~-~i~~l~~~~-~~s~a~i~ 417 (504)
++++|+++||-|+.||.|+.| ||+..|++|+|...+|..+++.+++...|.+.. ++..|+..+ |||++||.
T Consensus 268 ~gvLVLgATNiPw~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDis 340 (439)
T KOG0739|consen 268 DGVLVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDIS 340 (439)
T ss_pred CceEEEecCCCchhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceE
Confidence 679999999999999999999 999999999999999999999999998887654 577777766 99999986
No 30
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=5.8e-27 Score=252.51 Aligned_cols=170 Identities=28% Similarity=0.393 Sum_probs=137.9
Q ss_pred cccccccCCCCCcHHHHHHHHHHhcCCcEEEEecccc------CChHHHHHHHHhcc--CCeEEEEeccccccccccccc
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTV------QDNSELRSLLIDTS--SKSILVIEDIDCSLDLTGQRE 297 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~------~~~~~l~~l~~~~~--~~~Il~iDeiD~~~~~~~~~~ 297 (504)
++|+|||||||||||++|+|+|++++.+++.++.+.+ .+...++.+|..+. .||||||||||+++...+.
T Consensus 276 ~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~-- 353 (494)
T COG0464 276 PKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGP-- 353 (494)
T ss_pred CCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCC--
Confidence 6799999999999999999999999999999988764 25577899998875 7999999999998642221
Q ss_pred ccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecC
Q 037859 298 KKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSY 377 (504)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~ 377 (504)
+........+++||..|||+.. ..++++|+|||+++.||||++||||||..|+++.
T Consensus 354 ----------------------~~~~~~~r~~~~lL~~~d~~e~--~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~ 409 (494)
T COG0464 354 ----------------------SEDGSGRRVVGQLLTELDGIEK--AEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPL 409 (494)
T ss_pred ----------------------CCchHHHHHHHHHHHHhcCCCc--cCceEEEecCCCccccCHhhcccCccceEeecCC
Confidence 1122236799999999999955 4558999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhcCcCCcch--HHHHhcCcc-CCCCCHHHHHHhhC
Q 037859 378 CCFEAFKVLAKNYLDIDSHEL--YAVIESMPA-ETNMTPADVAENLM 421 (504)
Q Consensus 378 p~~e~~~~i~~~~l~~~~~~~--~~~i~~l~~-~~~~s~a~i~~~l~ 421 (504)
|+.++|..|++.++......+ ......+++ ..++|++||...+.
T Consensus 410 pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ 456 (494)
T COG0464 410 PDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVR 456 (494)
T ss_pred CCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHH
Confidence 999999999999997443321 122344444 34899999987654
No 31
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.6e-26 Score=229.41 Aligned_cols=188 Identities=24% Similarity=0.352 Sum_probs=148.1
Q ss_pred eeecCCCccccccccChhHHHHHHHhhcccccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccCC-----hHHHH-HHH
Q 037859 199 HVFFEHPATFDTLAMETKKKEEIKKDLKKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQD-----NSELR-SLL 272 (504)
Q Consensus 199 ~~~~~~p~~f~~~~~~~~~k~~i~~~l~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~-----~~~l~-~l~ 272 (504)
-+|+.+|..|....+-.. ++|+|||||||||||++|+|+|.+.+.+++.+..+.+.+ ...+. .+|
T Consensus 109 ilPlr~pelF~~g~Ll~p---------~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KWfgE~eKlv~AvF 179 (386)
T KOG0737|consen 109 ILPLRRPELFAKGKLLRP---------PKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKWFGEAQKLVKAVF 179 (386)
T ss_pred hhcccchhhhcccccccC---------CccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhhHHHHHHHHHHHH
Confidence 357777777764432221 799999999999999999999999999999999987643 23343 344
Q ss_pred Hhcc--CCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccCCCceEEE
Q 037859 273 IDTS--SKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERIIV 350 (504)
Q Consensus 273 ~~~~--~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~~~~ivI 350 (504)
.-+. +||||||||+|.++ +.|. .+.+......-++|+...||+.+..+..++|+
T Consensus 180 slAsKl~P~iIFIDEvds~L---~~R~---------------------s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVl 235 (386)
T KOG0737|consen 180 SLASKLQPSIIFIDEVDSFL---GQRR---------------------STDHEATAMMKNEFMALWDGLSSKDSERVLVL 235 (386)
T ss_pred hhhhhcCcceeehhhHHHHH---hhcc---------------------cchHHHHHHHHHHHHHHhccccCCCCceEEEE
Confidence 3333 79999999999986 3331 22344556677899999999988766668888
Q ss_pred EecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCcCCcchHHHHhcCccCC-CCCHHHHHHhhC
Q 037859 351 FTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDIDSHELYAVIESMPAET-NMTPADVAENLM 421 (504)
Q Consensus 351 ~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~~~~~~~~~i~~l~~~~-~~s~a~i~~~l~ 421 (504)
+|||+|..||.|++| ||...++++.|+.++|..|++-+|..+..+..-++.+++..+ |||+.||.++|.
T Consensus 236 gATNRP~DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~ 305 (386)
T KOG0737|consen 236 GATNRPFDLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCR 305 (386)
T ss_pred eCCCCCccHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHH
Confidence 999999999999999 999999999999999999999999876554333455566655 999999998876
No 32
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.93 E-value=4.4e-26 Score=251.29 Aligned_cols=195 Identities=27% Similarity=0.360 Sum_probs=151.7
Q ss_pred CccccccccChhHHHHHHHhh----------------cccccccCCCCCcHHHHHHHHHHhcCCcEEEEecccc------
Q 037859 205 PATFDTLAMETKKKEEIKKDL----------------KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTV------ 262 (504)
Q Consensus 205 p~~f~~~~~~~~~k~~i~~~l----------------~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~------ 262 (504)
..+|+++.+....++++.+.+ ++|+||+||||||||++++++|++++.+++.++++.+
T Consensus 148 ~~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g 227 (644)
T PRK10733 148 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVG 227 (644)
T ss_pred hCcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhc
Confidence 456888888777776655433 7899999999999999999999999999999988653
Q ss_pred CChHHHHHHHHhcc--CCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCcc
Q 037859 263 QDNSELRSLLIDTS--SKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLW 340 (504)
Q Consensus 263 ~~~~~l~~l~~~~~--~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~ 340 (504)
.....++.+|..+. .||||||||||.+.. ++.. +..++......++++||..|||+.
T Consensus 228 ~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~---~r~~------------------~~~g~~~~~~~~ln~lL~~mdg~~ 286 (644)
T PRK10733 228 VGASRVRDMFEQAKKAAPCIIFIDEIDAVGR---QRGA------------------GLGGGHDEREQTLNQMLVEMDGFE 286 (644)
T ss_pred ccHHHHHHHHHHHHhcCCcEEEehhHhhhhh---ccCC------------------CCCCCchHHHHHHHHHHHhhhccc
Confidence 24467788887653 789999999999742 1110 011233445678999999999995
Q ss_pred ccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCcCCcchHHHHhcCccCC-CCCHHHHHHh
Q 037859 341 SASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDIDSHELYAVIESMPAET-NMTPADVAEN 419 (504)
Q Consensus 341 ~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~~~~~~~~~i~~l~~~~-~~s~a~i~~~ 419 (504)
+ ..++++|+|||+++.||||++||||||++|++++|+.++|.+|++.|+..........+..++..+ |||+|||..+
T Consensus 287 ~--~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l 364 (644)
T PRK10733 287 G--NEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANL 364 (644)
T ss_pred C--CCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHH
Confidence 5 456999999999999999999999999999999999999999999998654322222233455544 9999999988
Q ss_pred hCC
Q 037859 420 LMP 422 (504)
Q Consensus 420 l~~ 422 (504)
+..
T Consensus 365 ~~e 367 (644)
T PRK10733 365 VNE 367 (644)
T ss_pred HHH
Confidence 654
No 33
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.92 E-value=3.3e-25 Score=229.84 Aligned_cols=173 Identities=28% Similarity=0.352 Sum_probs=128.2
Q ss_pred cccccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccC------ChHHHHHHHHhc--cCCeEEEEeccccccccccccc
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQ------DNSELRSLLIDT--SSKSILVIEDIDCSLDLTGQRE 297 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~------~~~~l~~l~~~~--~~~~Il~iDeiD~~~~~~~~~~ 297 (504)
++|+|||||||||||++|+++|++++.+++.+....+. ....++.+|..+ ..|+||||||+|.++. .+.
T Consensus 156 p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~---~~~ 232 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAA---KRT 232 (364)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhcc---ccc
Confidence 78999999999999999999999999999888655431 123355566544 4689999999999752 111
Q ss_pred ccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecC
Q 037859 298 KKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSY 377 (504)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~ 377 (504)
. ...++.......+..+|+.+|++.. .+++.||+|||+++.+|++++||||||..|+|+.
T Consensus 233 ~------------------~~~~~~~~~~~~l~~ll~~ld~~~~--~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~ 292 (364)
T TIGR01242 233 D------------------SGTSGDREVQRTLMQLLAELDGFDP--RGNVKVIAATNRPDILDPALLRPGRFDRIIEVPL 292 (364)
T ss_pred c------------------CCCCccHHHHHHHHHHHHHhhCCCC--CCCEEEEEecCChhhCChhhcCcccCceEEEeCC
Confidence 0 0111223345678899999998743 3568999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhcCcCCcchHHHHhcCccC-CCCCHHHHHHhhC
Q 037859 378 CCFEAFKVLAKNYLDIDSHELYAVIESMPAE-TNMTPADVAENLM 421 (504)
Q Consensus 378 p~~e~~~~i~~~~l~~~~~~~~~~i~~l~~~-~~~s~a~i~~~l~ 421 (504)
|+.++|..|++.++..........+..++.. .|++++||..++.
T Consensus 293 P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~ 337 (364)
T TIGR01242 293 PDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICT 337 (364)
T ss_pred cCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHH
Confidence 9999999999998754322111123334443 4899999986543
No 34
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=3.9e-26 Score=233.52 Aligned_cols=191 Identities=24% Similarity=0.342 Sum_probs=140.0
Q ss_pred ccccccChhHHHHHHHhhcccccccCCCCCcHHHHHHHHHHhcCCc-EEEEecccc------CChHHHHHHHHhc-----
Q 037859 208 FDTLAMETKKKEEIKKDLKKGYLLYGPPGTGKSTMIAAMANFLNYD-VYDLELTTV------QDNSELRSLLIDT----- 275 (504)
Q Consensus 208 f~~~~~~~~~k~~i~~~l~rg~LL~GPpGtGKTsla~aiA~~l~~~-i~~l~~~~~------~~~~~l~~l~~~~----- 275 (504)
|..=+++|+..+++-----+|+|||||||||||.+|+.|..-|+.. --.++...+ .+++++|++|..+
T Consensus 238 FAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r 317 (744)
T KOG0741|consen 238 FASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESEENVRKLFADAEEEQR 317 (744)
T ss_pred HHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHHHHHHHHhHHHHHH
Confidence 4444555544333222116899999999999999999999998753 222333322 4678899999876
Q ss_pred -----cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccCCCceEEE
Q 037859 276 -----SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERIIV 350 (504)
Q Consensus 276 -----~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~~~~ivI 350 (504)
+.-.||++||||++|..+|+. .++.+....++++||.-|||+... .+++||
T Consensus 318 ~~g~~SgLHIIIFDEiDAICKqRGS~----------------------~g~TGVhD~VVNQLLsKmDGVeqL--NNILVI 373 (744)
T KOG0741|consen 318 RLGANSGLHIIIFDEIDAICKQRGSM----------------------AGSTGVHDTVVNQLLSKMDGVEQL--NNILVI 373 (744)
T ss_pred hhCccCCceEEEehhhHHHHHhcCCC----------------------CCCCCccHHHHHHHHHhcccHHhh--hcEEEE
Confidence 234799999999998544433 334556677999999999999765 559999
Q ss_pred EecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCcC-Cc---chHHHHhcCccCC-CCCHHHHHHhhCC
Q 037859 351 FTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDID-SH---ELYAVIESMPAET-NMTPADVAENLMP 422 (504)
Q Consensus 351 ~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~~-~~---~~~~~i~~l~~~~-~~s~a~i~~~l~~ 422 (504)
+.||+++.||+||+||||+..++++++|+.+.|.+|++.+-..- .+ ....++.+++..+ +||+|+|.+++..
T Consensus 374 GMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVks 450 (744)
T KOG0741|consen 374 GMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKS 450 (744)
T ss_pred eccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHH
Confidence 99999999999999999999999999999999999987665321 11 1112234444444 9999999987653
No 35
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.2e-24 Score=228.93 Aligned_cols=186 Identities=28% Similarity=0.421 Sum_probs=155.5
Q ss_pred eeecCCCccccccccChhHHHHHHHhhcccccccCCCCCcHHHHHHHHHHhcCCcEEEEecccc------CChHHHHHHH
Q 037859 199 HVFFEHPATFDTLAMETKKKEEIKKDLKKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTV------QDNSELRSLL 272 (504)
Q Consensus 199 ~~~~~~p~~f~~~~~~~~~k~~i~~~l~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~------~~~~~l~~l~ 272 (504)
..|+.||..|..+...+ |+|+|+|||||||||.+++|+|++.+..++.++...+ .+.+.||+.|
T Consensus 201 ~~pl~~~~~~~s~g~~~----------prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~~gEte~~LR~~f 270 (693)
T KOG0730|consen 201 ELPLRHPALFKSIGIKP----------PRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKFPGETESNLRKAF 270 (693)
T ss_pred HhhhcchhhhhhcCCCC----------CCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhcccchHHHHHHHH
Confidence 46888888888888888 9999999999999999999999999999999998865 4678899999
Q ss_pred Hhcc--C-CeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccCCCceEE
Q 037859 273 IDTS--S-KSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERII 349 (504)
Q Consensus 273 ~~~~--~-~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~~~~iv 349 (504)
..+. + |+||||||+|.+++ +|.. ......++.++|+..+||.. ....+|+
T Consensus 271 ~~a~k~~~psii~IdEld~l~p---~r~~----------------------~~~~e~Rv~sqlltL~dg~~--~~~~viv 323 (693)
T KOG0730|consen 271 AEALKFQVPSIIFIDELDALCP---KREG----------------------ADDVESRVVSQLLTLLDGLK--PDAKVIV 323 (693)
T ss_pred HHHhccCCCeeEeHHhHhhhCC---cccc----------------------cchHHHHHHHHHHHHHhhCc--CcCcEEE
Confidence 8874 4 99999999999863 3320 11135678999999999994 3567999
Q ss_pred EEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCcCCcchHHHHhcCccCC-CCCHHHHHHhhCC
Q 037859 350 VFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDIDSHELYAVIESMPAET-NMTPADVAENLMP 422 (504)
Q Consensus 350 I~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~~~~~~~~~i~~l~~~~-~~s~a~i~~~l~~ 422 (504)
|+|||+++.||||+.| ||||..+.++.|+..+|..|++.+.....+....++..++..+ ||++||+..++..
T Consensus 324 l~atnrp~sld~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~e 396 (693)
T KOG0730|consen 324 LAATNRPDSLDPALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCRE 396 (693)
T ss_pred EEecCCccccChhhhc-CCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHH
Confidence 9999999999999999 9999999999999999999999998765554334555556544 9999999987754
No 36
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=3.8e-24 Score=236.92 Aligned_cols=170 Identities=25% Similarity=0.318 Sum_probs=132.2
Q ss_pred cccccccCCCCCcHHHHHHHHHHhcCC-----cEEEEec-----ccc-CChHHHHHHHHhcc--CCeEEEEecccccccc
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFLNY-----DVYDLEL-----TTV-QDNSELRSLLIDTS--SKSILVIEDIDCSLDL 292 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l~~-----~i~~l~~-----~~~-~~~~~l~~l~~~~~--~~~Il~iDeiD~~~~~ 292 (504)
|||+|||||||||||++|+|+|..+.. .+|.-+. .++ ..+.+++-+|.++. .|+|||+||||-+.+.
T Consensus 299 PrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapv 378 (1080)
T KOG0732|consen 299 PRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPV 378 (1080)
T ss_pred CcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCchhhccccCcHHHHHHHHHHHHhccCceEEecccccccccc
Confidence 999999999999999999999998732 2222111 123 35577888998874 7999999999987543
Q ss_pred cccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccCCCceEEEEecCCCCCCChhhhcCCCceeE
Q 037859 293 TGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKH 372 (504)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~ 372 (504)
..+. .......+++.||..|||+.+ .+.+++|+|||+++.+||||+||||||+.
T Consensus 379 rSsk------------------------qEqih~SIvSTLLaLmdGlds--RgqVvvigATnRpda~dpaLRRPgrfdre 432 (1080)
T KOG0732|consen 379 RSSK------------------------QEQIHASIVSTLLALMDGLDS--RGQVVVIGATNRPDAIDPALRRPGRFDRE 432 (1080)
T ss_pred ccch------------------------HHHhhhhHHHHHHHhccCCCC--CCceEEEcccCCccccchhhcCCccccee
Confidence 3221 223355689999999999955 67799999999999999999999999999
Q ss_pred EEecCCCHHHHHHHHHHhcCcCCcchHH-HHhcCccCC-CCCHHHHHHhhC
Q 037859 373 IEMSYCCFEAFKVLAKNYLDIDSHELYA-VIESMPAET-NMTPADVAENLM 421 (504)
Q Consensus 373 I~~~~p~~e~~~~i~~~~l~~~~~~~~~-~i~~l~~~~-~~s~a~i~~~l~ 421 (504)
++|++|+.++|..|+..+-.....+... ....+++.+ |+-+|||..+|.
T Consensus 433 f~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCT 483 (1080)
T KOG0732|consen 433 FYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCT 483 (1080)
T ss_pred EeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHH
Confidence 9999999999999999887665554433 345556555 999999876544
No 37
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=7.1e-23 Score=210.17 Aligned_cols=185 Identities=25% Similarity=0.329 Sum_probs=149.0
Q ss_pred ecCCCccccccccChhHHHHHHHhhcccccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccC-----Ch-HHHHHHHHh
Q 037859 201 FFEHPATFDTLAMETKKKEEIKKDLKKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQ-----DN-SELRSLLID 274 (504)
Q Consensus 201 ~~~~p~~f~~~~~~~~~k~~i~~~l~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~-----~~-~~l~~l~~~ 274 (504)
|+..|..|..+.-. .+|+||.||||||||+|++|||.+.+..++.+..+++. .. .-++.+|.-
T Consensus 172 p~lr~d~F~glr~p-----------~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK~~Ge~eK~vralf~v 240 (428)
T KOG0740|consen 172 PLLRPDLFLGLREP-----------VRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSKYVGESEKLVRALFKV 240 (428)
T ss_pred cccchHhhhccccc-----------cchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhhccChHHHHHHHHHHH
Confidence 55555555544332 58999999999999999999999999999999888763 22 345555544
Q ss_pred c--cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccCCCceEEEEe
Q 037859 275 T--SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERIIVFT 352 (504)
Q Consensus 275 ~--~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~~~~ivI~t 352 (504)
+ .+|+|+||||||.+|.. | .+.....+.....++|..+||..+...+.++||+|
T Consensus 241 Ar~~qPsvifidEidslls~---R---------------------s~~e~e~srr~ktefLiq~~~~~s~~~drvlviga 296 (428)
T KOG0740|consen 241 ARSLQPSVIFIDEIDSLLSK---R---------------------SDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGA 296 (428)
T ss_pred HHhcCCeEEEechhHHHHhh---c---------------------CCcccccchhhhhHHHhhhccccCCCCCeEEEEec
Confidence 4 48999999999998742 2 12234446678899999999998877778889999
Q ss_pred cCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCcCCcchH-HHHhcCccCC-CCCHHHHHHhhCC
Q 037859 353 TNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDIDSHELY-AVIESMPAET-NMTPADVAENLMP 422 (504)
Q Consensus 353 TN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~~~~~~~-~~i~~l~~~~-~~s~a~i~~~l~~ 422 (504)
||.|+.+|.|++| ||...+++|.|+.+.|..++++++....+.+. .+++.+++.+ |||+.||.++|..
T Consensus 297 TN~P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~ke 366 (428)
T KOG0740|consen 297 TNRPWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKE 366 (428)
T ss_pred CCCchHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHH
Confidence 9999999999999 99999999999999999999999987766554 4677777766 9999999988764
No 38
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.88 E-value=1.9e-22 Score=226.74 Aligned_cols=189 Identities=29% Similarity=0.382 Sum_probs=146.0
Q ss_pred ccccccccChhHHHHHHHhh-----------------cccccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccC-----
Q 037859 206 ATFDTLAMETKKKEEIKKDL-----------------KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQ----- 263 (504)
Q Consensus 206 ~~f~~~~~~~~~k~~i~~~l-----------------~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~----- 263 (504)
.+|+++++.+..++.|.+.+ ++|+|||||||||||++++++|++++.+++.++...+.
T Consensus 175 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~~g 254 (733)
T TIGR01243 175 VTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKYYG 254 (733)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhccccc
Confidence 46888888888887776654 68999999999999999999999999999999876542
Q ss_pred -ChHHHHHHHHhc--cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCcc
Q 037859 264 -DNSELRSLLIDT--SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLW 340 (504)
Q Consensus 264 -~~~~l~~l~~~~--~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~ 340 (504)
....++.+|..+ ..|+||||||||.++. ++. ..........++.|++.||++.
T Consensus 255 ~~~~~l~~lf~~a~~~~p~il~iDEid~l~~---~r~---------------------~~~~~~~~~~~~~Ll~~ld~l~ 310 (733)
T TIGR01243 255 ESEERLREIFKEAEENAPSIIFIDEIDAIAP---KRE---------------------EVTGEVEKRVVAQLLTLMDGLK 310 (733)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEeehhhhhcc---ccc---------------------CCcchHHHHHHHHHHHHhhccc
Confidence 235678888765 4689999999999753 221 0112233567899999999985
Q ss_pred ccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCcCCcchHHHHhcCccC-CCCCHHHHHHh
Q 037859 341 SASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDIDSHELYAVIESMPAE-TNMTPADVAEN 419 (504)
Q Consensus 341 ~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~~~~~~~~~i~~l~~~-~~~s~a~i~~~ 419 (504)
. ...++||+|||+++.|||++.||||||.+|.++.|+.++|..|++.+...........+..++.. .|++++++..+
T Consensus 311 ~--~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l 388 (733)
T TIGR01243 311 G--RGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAAL 388 (733)
T ss_pred c--CCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHH
Confidence 4 45688999999999999999999999999999999999999999987654322111123344443 49999999865
Q ss_pred h
Q 037859 420 L 420 (504)
Q Consensus 420 l 420 (504)
+
T Consensus 389 ~ 389 (733)
T TIGR01243 389 A 389 (733)
T ss_pred H
Confidence 4
No 39
>PF14363 AAA_assoc: Domain associated at C-terminal with AAA
Probab=99.83 E-value=3e-20 Score=155.88 Aligned_cols=96 Identities=40% Similarity=0.709 Sum_probs=90.4
Q ss_pred hchHHHHHHHHHHHHHhhc-ccCCcEEEEEeeccCCcCCccHHHHHHHHHHhcccCCCCCceEEEeeCCCCceEEEecCC
Q 037859 28 YFPYQLQGYVEKYSQKLFR-ILYPYIEMTFHEFSGDRLKRSEAFSAIQNYLSTTASLHATRFKADVVKDSQSIVLSMDDR 106 (504)
Q Consensus 28 ~~P~~l~~~i~~~~~~l~~-~~~~~~ti~i~e~~~~~~~~n~~y~~~~~~ls~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 106 (504)
|+|++|+.++.+++++++. +++||+||+|+|+. |++.|++|+++++||++++++.+++|+++..+++++++++|+++
T Consensus 1 ~~P~~lr~~~~~~~~~~~~~~~s~~~ti~I~E~~--g~~~N~ly~a~~~YL~s~~s~~a~rL~~~~~~~~~~~~l~l~~~ 78 (98)
T PF14363_consen 1 LLPHELRSYLRSLLRRLFSSRFSPYLTIVIPEFD--GLSRNELYDAAQAYLSSKISPSARRLKASKSKNSKNLVLSLDDG 78 (98)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCCcEEEEEEeCC--CccccHHHHHHHHHHhhccCcccceeeecccCCCCceEEecCCC
Confidence 6899999999999987664 99999999999995 58999999999999999999999999999999999999999999
Q ss_pred CceeeeecCeEEEEEEeee
Q 037859 107 QEVTDEFKGIKVWWVLGKN 125 (504)
Q Consensus 107 ~~v~d~f~g~~~~w~~~~~ 125 (504)
++|+|+|+|+++||..++.
T Consensus 79 e~V~D~F~Gv~v~W~~~~~ 97 (98)
T PF14363_consen 79 EEVVDVFEGVKVWWSSVCT 97 (98)
T ss_pred CEEEEEECCEEEEEEEEcc
Confidence 9999999999999999864
No 40
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=2.4e-20 Score=186.28 Aligned_cols=206 Identities=22% Similarity=0.265 Sum_probs=145.6
Q ss_pred cccchhhhhhhHHHHHhhhhhHHhhhccceecccCCCCCccCccCc------cceeeecCCCccccccccChhHHHHHHH
Q 037859 150 KSHRELITGPYVNHVLAGGKAITVKNRQRKLYSNNPSKNWYGWRST------KWSHVFFEHPATFDTLAMETKKKEEIKK 223 (504)
Q Consensus 150 ~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~w~~~~~~~p~~f~~~~~~~~~k~~i~~ 223 (504)
.+....|...|+..+|-.-..++..++.+ ..|.+--.. .-....-....+|+.|++.|.++++|-+
T Consensus 298 tkeg~~V~w~yi~r~LGqPSLiREsSrg~--------~pw~gsls~~k~~i~~~~~~s~~gk~pl~~ViL~psLe~Rie~ 369 (630)
T KOG0742|consen 298 TKEGTLVTWRYIERRLGQPSLIRESSRGR--------FPWIGSLSALKHPIQGSRSASSRGKDPLEGVILHPSLEKRIED 369 (630)
T ss_pred ccccchhHHHHHHHHcCCchhhhhhcccc--------CCCcccHHHHhchhhhhHhhhhcCCCCcCCeecCHHHHHHHHH
Confidence 34456788999988887766665544421 223210000 0001111223459999999999888876
Q ss_pred hh------------cccccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccC-----ChHHHHHHHHhc---cCCeEEEE
Q 037859 224 DL------------KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQ-----DNSELRSLLIDT---SSKSILVI 283 (504)
Q Consensus 224 ~l------------~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~-----~~~~l~~l~~~~---~~~~Il~i 283 (504)
.. -|.+|||||||||||++|+-||.+.|+++-.+...++. ....+.++|.=+ ...-+|||
T Consensus 370 lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPlG~qaVTkiH~lFDWakkS~rGLllFI 449 (630)
T KOG0742|consen 370 LAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPLGAQAVTKIHKLFDWAKKSRRGLLLFI 449 (630)
T ss_pred HHHHhcccccccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccccchHHHHHHHHHHHHHhhcccceEEEe
Confidence 55 47799999999999999999999999998777666552 335677777543 35678999
Q ss_pred ecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccCCCceEEEEecCCCCCCChhh
Q 037859 284 EDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPAL 363 (504)
Q Consensus 284 DeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~~~~ivI~tTN~~e~Ld~AL 363 (504)
||+|+++.-.. ....+...+..|+.||--- |- .+..++++.+||+|+.||.|+
T Consensus 450 DEADAFLceRn-----------------------ktymSEaqRsaLNAlLfRT-Gd---qSrdivLvlAtNrpgdlDsAV 502 (630)
T KOG0742|consen 450 DEADAFLCERN-----------------------KTYMSEAQRSALNALLFRT-GD---QSRDIVLVLATNRPGDLDSAV 502 (630)
T ss_pred hhhHHHHHHhc-----------------------hhhhcHHHHHHHHHHHHHh-cc---cccceEEEeccCCccchhHHH
Confidence 99999863111 1223344556777777432 22 235689999999999999999
Q ss_pred hcCCCceeEEEecCCCHHHHHHHHHHhcC
Q 037859 364 IRRGRMDKHIEMSYCCFEAFKVLAKNYLD 392 (504)
Q Consensus 364 lRpGR~d~~I~~~~p~~e~~~~i~~~~l~ 392 (504)
-. |||..|+|++|..|+|..|+..||.
T Consensus 503 ~D--Ride~veFpLPGeEERfkll~lYln 529 (630)
T KOG0742|consen 503 ND--RIDEVVEFPLPGEEERFKLLNLYLN 529 (630)
T ss_pred Hh--hhhheeecCCCChHHHHHHHHHHHH
Confidence 99 9999999999999999999998874
No 41
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.82 E-value=2.9e-20 Score=163.69 Aligned_cols=123 Identities=33% Similarity=0.561 Sum_probs=99.3
Q ss_pred ccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccC------ChHHHHHHHHhc--cC-CeEEEEeccccccccccccccc
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQ------DNSELRSLLIDT--SS-KSILVIEDIDCSLDLTGQREKK 299 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~------~~~~l~~l~~~~--~~-~~Il~iDeiD~~~~~~~~~~~~ 299 (504)
+|||||||||||++|+++|++++.+++.+++..+. ....+...|..+ .. |+||+|||+|.++...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~------ 74 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS------ 74 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC------
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccc------
Confidence 58999999999999999999999999999998764 335677777665 34 8999999999986311
Q ss_pred ccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecC
Q 037859 300 KEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSY 377 (504)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~ 377 (504)
...........+..|++.+|..... +.++++|+|||.++.+||+|+| |||+.+|+++.
T Consensus 75 ------------------~~~~~~~~~~~~~~L~~~l~~~~~~-~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 75 ------------------QPSSSSFEQRLLNQLLSLLDNPSSK-NSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp ------------------STSSSHHHHHHHHHHHHHHHTTTTT-SSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred ------------------ccccccccccccceeeecccccccc-cccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 0123344567889999999987543 3468999999999999999998 89999999874
No 42
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.79 E-value=2.7e-18 Score=162.45 Aligned_cols=155 Identities=21% Similarity=0.284 Sum_probs=110.0
Q ss_pred cCCCccccccccChhHHHHHHHhh----cc-----cccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccCChHHHHHHH
Q 037859 202 FEHPATFDTLAMETKKKEEIKKDL----KK-----GYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQDNSELRSLL 272 (504)
Q Consensus 202 ~~~p~~f~~~~~~~~~k~~i~~~l----~r-----g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~~l~~l~ 272 (504)
-.+|.+|++++++++++..+.-.+ .| .+||||||||||||||..||++++.++..++...+....++..++
T Consensus 17 ~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~~dl~~il 96 (233)
T PF05496_consen 17 RLRPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKAGDLAAIL 96 (233)
T ss_dssp HTS-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SCHHHHHHH
T ss_pred hcCCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhhHHHHHHHH
Confidence 447999999999999988755443 23 489999999999999999999999999998887777778899999
Q ss_pred HhccCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCcc-----ccCC---
Q 037859 273 IDTSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLW-----SASG--- 344 (504)
Q Consensus 273 ~~~~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~-----~~~~--- 344 (504)
.....+.||||||||.+ ++...-.|+..|+... ....
T Consensus 97 ~~l~~~~ILFIDEIHRl-----------------------------------nk~~qe~LlpamEd~~idiiiG~g~~ar 141 (233)
T PF05496_consen 97 TNLKEGDILFIDEIHRL-----------------------------------NKAQQEILLPAMEDGKIDIIIGKGPNAR 141 (233)
T ss_dssp HT--TT-EEEECTCCC-------------------------------------HHHHHHHHHHHHCSEEEEEBSSSSS-B
T ss_pred HhcCCCcEEEEechhhc-----------------------------------cHHHHHHHHHHhccCeEEEEeccccccc
Confidence 98889999999999986 2233344555554321 1111
Q ss_pred ------CceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCc
Q 037859 345 ------EERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDI 393 (504)
Q Consensus 345 ------~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~ 393 (504)
....+|+||++...|.++|.. ||.....+.+.+.++...|+++....
T Consensus 142 ~~~~~l~~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~ 194 (233)
T PF05496_consen 142 SIRINLPPFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARI 194 (233)
T ss_dssp EEEEE----EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHC
T ss_pred eeeccCCCceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHH
Confidence 235689999999999999999 99998999999999999999876543
No 43
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=8.6e-19 Score=170.95 Aligned_cols=160 Identities=20% Similarity=0.321 Sum_probs=122.2
Q ss_pred ccccccChhHHHHHHHhh------------------cccccccCCCCCcHHHHHHHHHHhcCC---------cEEEEecc
Q 037859 208 FDTLAMETKKKEEIKKDL------------------KKGYLLYGPPGTGKSTMIAAMANFLNY---------DVYDLELT 260 (504)
Q Consensus 208 f~~~~~~~~~k~~i~~~l------------------~rg~LL~GPpGtGKTsla~aiA~~l~~---------~i~~l~~~ 260 (504)
+++++.+.++|++++... .|-+|||||||||||+|++|+|..|.. .++.+++.
T Consensus 141 WEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh 220 (423)
T KOG0744|consen 141 WESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH 220 (423)
T ss_pred HHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh
Confidence 567788899999999887 677999999999999999999998842 35666666
Q ss_pred cc------CChHHHHHHHHhcc-----C--CeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhh
Q 037859 261 TV------QDNSELRSLLIDTS-----S--KSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKV 327 (504)
Q Consensus 261 ~~------~~~~~l~~l~~~~~-----~--~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (504)
++ +++.-+.++|.+.. . -..++|||++++.. .|... .........-+
T Consensus 221 sLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~---aR~s~-----------------~S~~EpsDaIR 280 (423)
T KOG0744|consen 221 SLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAA---ARTSA-----------------SSRNEPSDAIR 280 (423)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHH---HHHhh-----------------hcCCCCchHHH
Confidence 54 24444555665431 2 24567999999742 22110 11223345667
Q ss_pred HHHHHhhhhcCccccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhc
Q 037859 328 TLSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYL 391 (504)
Q Consensus 328 ~ls~lL~~lDg~~~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l 391 (504)
.++.+|.+||.+.. ..++++++|+|-.+.||-|+.. |-|.+.++++|+.+++..|++..+
T Consensus 281 vVNalLTQlDrlK~--~~NvliL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~Ilksci 340 (423)
T KOG0744|consen 281 VVNALLTQLDRLKR--YPNVLILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCI 340 (423)
T ss_pred HHHHHHHHHHHhcc--CCCEEEEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHH
Confidence 99999999999954 4668899999999999999999 999999999999999999887654
No 44
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=2.4e-17 Score=174.76 Aligned_cols=146 Identities=26% Similarity=0.391 Sum_probs=111.2
Q ss_pred cChhHHHHHHHhh----------cccccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccCChHHHH-------------
Q 037859 213 METKKKEEIKKDL----------KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQDNSELR------------- 269 (504)
Q Consensus 213 ~~~~~k~~i~~~l----------~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~~l~------------- 269 (504)
+-.++|++|++++ .+-++|+||||+||||++++||..||..++.+++..+.+..+++
T Consensus 415 gm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGk 494 (906)
T KOG2004|consen 415 GMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGK 494 (906)
T ss_pred chHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccceeeeccCChH
Confidence 3456899999999 33478999999999999999999999999999999988776663
Q ss_pred --HHHHhc-cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCcccc----
Q 037859 270 --SLLIDT-SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSA---- 342 (504)
Q Consensus 270 --~l~~~~-~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~---- 342 (504)
+.+... ..+.+++|||||.+ |+. ..+ ...+.||..||--...
T Consensus 495 iIq~LK~v~t~NPliLiDEvDKl----G~g------------------------~qG---DPasALLElLDPEQNanFlD 543 (906)
T KOG2004|consen 495 IIQCLKKVKTENPLILIDEVDKL----GSG------------------------HQG---DPASALLELLDPEQNANFLD 543 (906)
T ss_pred HHHHHHhhCCCCceEEeehhhhh----CCC------------------------CCC---ChHHHHHHhcChhhccchhh
Confidence 222222 36789999999996 211 111 1234455444422110
Q ss_pred -------CCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcC
Q 037859 343 -------SGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLD 392 (504)
Q Consensus 343 -------~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~ 392 (504)
.-..++||||.|..+.|+|+|+. || ..|+++-...++...|+++||-
T Consensus 544 HYLdVp~DLSkVLFicTAN~idtIP~pLlD--RM-EvIelsGYv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 544 HYLDVPVDLSKVLFICTANVIDTIPPPLLD--RM-EVIELSGYVAEEKVKIAERYLI 597 (906)
T ss_pred hccccccchhheEEEEeccccccCChhhhh--hh-heeeccCccHHHHHHHHHHhhh
Confidence 01348999999999999999999 99 4799999999999999999983
No 45
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.73 E-value=2.8e-17 Score=168.21 Aligned_cols=154 Identities=21% Similarity=0.273 Sum_probs=119.9
Q ss_pred CCccccccccChhHHHHHHHhh---------cccccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccCChHHHHHHHHh
Q 037859 204 HPATFDTLAMETKKKEEIKKDL---------KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQDNSELRSLLID 274 (504)
Q Consensus 204 ~p~~f~~~~~~~~~k~~i~~~l---------~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~~l~~l~~~ 274 (504)
.|.+|+.+++.++.++.+...+ ++++|||||||||||++|+++|++++.++...+...+.....+..++..
T Consensus 20 rP~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~~~~l~~~l~~ 99 (328)
T PRK00080 20 RPKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEKPGDLAAILTN 99 (328)
T ss_pred CcCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccChHHHHHHHHh
Confidence 5889999999999998876555 3569999999999999999999999999888777666666778888888
Q ss_pred ccCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCc---------ccc---
Q 037859 275 TSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGL---------WSA--- 342 (504)
Q Consensus 275 ~~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~---------~~~--- 342 (504)
...++||||||||.+-. . ....|.+.|+.. .+.
T Consensus 100 l~~~~vl~IDEi~~l~~---~--------------------------------~~e~l~~~~e~~~~~~~l~~~~~~~~~ 144 (328)
T PRK00080 100 LEEGDVLFIDEIHRLSP---V--------------------------------VEEILYPAMEDFRLDIMIGKGPAARSI 144 (328)
T ss_pred cccCCEEEEecHhhcch---H--------------------------------HHHHHHHHHHhcceeeeeccCccccce
Confidence 88899999999998621 0 011122222211 000
Q ss_pred --CCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCcC
Q 037859 343 --SGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDID 394 (504)
Q Consensus 343 --~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~~ 394 (504)
.-...++|++||+...++++|.+ ||+..+.+++++.+++..|+++.....
T Consensus 145 ~~~l~~~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~ 196 (328)
T PRK00080 145 RLDLPPFTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARIL 196 (328)
T ss_pred eecCCCceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHc
Confidence 01236789999999999999999 999999999999999999999876543
No 46
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=2.4e-16 Score=168.14 Aligned_cols=146 Identities=26% Similarity=0.332 Sum_probs=114.4
Q ss_pred cChhHHHHHHHhh--------ccc--ccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccCChHHHH------------H
Q 037859 213 METKKKEEIKKDL--------KKG--YLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQDNSELR------------S 270 (504)
Q Consensus 213 ~~~~~k~~i~~~l--------~rg--~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~~l~------------~ 270 (504)
+-+++|++|++.+ -+| ++|+||||+|||||+++||..+|..++.++++.+.+..++| +
T Consensus 327 GLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIGamPGr 406 (782)
T COG0466 327 GLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPGK 406 (782)
T ss_pred CchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccccccccCChH
Confidence 4456899999999 333 67899999999999999999999999999999998888774 1
Q ss_pred H---HHhc-cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCcccc----
Q 037859 271 L---LIDT-SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSA---- 342 (504)
Q Consensus 271 l---~~~~-~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~---- 342 (504)
+ +..+ ..+.+++|||||.+. + .......|.||..||--...
T Consensus 407 IiQ~mkka~~~NPv~LLDEIDKm~----s---------------------------s~rGDPaSALLEVLDPEQN~~F~D 455 (782)
T COG0466 407 IIQGMKKAGVKNPVFLLDEIDKMG----S---------------------------SFRGDPASALLEVLDPEQNNTFSD 455 (782)
T ss_pred HHHHHHHhCCcCCeEEeechhhcc----C---------------------------CCCCChHHHHHhhcCHhhcCchhh
Confidence 2 2222 357899999999972 1 11122346677766632211
Q ss_pred -------CCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcC
Q 037859 343 -------SGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLD 392 (504)
Q Consensus 343 -------~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~ 392 (504)
.-.+++||+|+|..+.||.+|+. || ..|+++-.+.++...|+++||-
T Consensus 456 hYLev~yDLS~VmFiaTANsl~tIP~PLlD--RM-EiI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 456 HYLEVPYDLSKVMFIATANSLDTIPAPLLD--RM-EVIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred ccccCccchhheEEEeecCccccCChHHhc--ce-eeeeecCCChHHHHHHHHHhcc
Confidence 11458999999999999999999 99 5899999999999999999983
No 47
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.69 E-value=1.5e-16 Score=161.16 Aligned_cols=149 Identities=18% Similarity=0.246 Sum_probs=114.7
Q ss_pred cccccccChhHHHHHHHhh---------cccccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccCChHHHHHHHHhccC
Q 037859 207 TFDTLAMETKKKEEIKKDL---------KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQDNSELRSLLIDTSS 277 (504)
Q Consensus 207 ~f~~~~~~~~~k~~i~~~l---------~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~~l~~l~~~~~~ 277 (504)
+|++++++++.++.+...+ +.+++||||||||||++|+++|++++.++..+..........+...+.....
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 81 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKPGDLAAILTNLEE 81 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcCchhHHHHHHhccc
Confidence 5888999999988877766 3458999999999999999999999998877776655555677777777778
Q ss_pred CeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCcc--------------ccC
Q 037859 278 KSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLW--------------SAS 343 (504)
Q Consensus 278 ~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~--------------~~~ 343 (504)
+.||||||||.+.+ .....|++.++... ...
T Consensus 82 ~~vl~iDEi~~l~~-----------------------------------~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~ 126 (305)
T TIGR00635 82 GDVLFIDEIHRLSP-----------------------------------AVEELLYPAMEDFRLDIVIGKGPSARSVRLD 126 (305)
T ss_pred CCEEEEehHhhhCH-----------------------------------HHHHHhhHHHhhhheeeeeccCccccceeec
Confidence 89999999998621 01112233322111 001
Q ss_pred CCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcC
Q 037859 344 GEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLD 392 (504)
Q Consensus 344 ~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~ 392 (504)
....++|++||++..++++|++ ||...+.++.++.++...+++....
T Consensus 127 ~~~~~li~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~ 173 (305)
T TIGR00635 127 LPPFTLVGATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAG 173 (305)
T ss_pred CCCeEEEEecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHH
Confidence 1337899999999999999999 9998999999999999999987764
No 48
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.68 E-value=5.7e-16 Score=175.01 Aligned_cols=148 Identities=27% Similarity=0.296 Sum_probs=110.4
Q ss_pred cccChhHHHHHHHhh----------cccccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccCCh---------------
Q 037859 211 LAMETKKKEEIKKDL----------KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQDN--------------- 265 (504)
Q Consensus 211 ~~~~~~~k~~i~~~l----------~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~~--------------- 265 (504)
+.+.++.|+.|.+.+ +..+||+||||||||++|++||+.++.+++.++++.+.+.
T Consensus 322 ~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~~~ 401 (775)
T TIGR00763 322 HYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGAMP 401 (775)
T ss_pred cCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCCCC
Confidence 667788899988866 2349999999999999999999999999999987665332
Q ss_pred HHHHHHHHhc-cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCcc----
Q 037859 266 SELRSLLIDT-SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLW---- 340 (504)
Q Consensus 266 ~~l~~l~~~~-~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~---- 340 (504)
..+.+.|..+ ..+.||||||||.+.. +. .....+.||..||...
T Consensus 402 g~i~~~l~~~~~~~~villDEidk~~~--~~-----------------------------~~~~~~aLl~~ld~~~~~~f 450 (775)
T TIGR00763 402 GRIIQGLKKAKTKNPLFLLDEIDKIGS--SF-----------------------------RGDPASALLEVLDPEQNNAF 450 (775)
T ss_pred chHHHHHHHhCcCCCEEEEechhhcCC--cc-----------------------------CCCHHHHHHHhcCHHhcCcc
Confidence 2344455443 3456999999999731 00 0012456666666310
Q ss_pred -c------cCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcC
Q 037859 341 -S------ASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLD 392 (504)
Q Consensus 341 -~------~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~ 392 (504)
. ..-.++++|+|||..+.|||+|++ ||+ .|+|+.++.+++..|+++|+.
T Consensus 451 ~d~~~~~~~d~s~v~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l~ 506 (775)
T TIGR00763 451 SDHYLDVPFDLSKVIFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYLI 506 (775)
T ss_pred ccccCCceeccCCEEEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHHH
Confidence 0 011357899999999999999999 995 789999999999999999873
No 49
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=4.2e-16 Score=167.55 Aligned_cols=150 Identities=17% Similarity=0.274 Sum_probs=120.9
Q ss_pred CCCccccccccChhHHHHHHHhh-----cccccccCCCCCcHHHHHHHHHHhcCC-------------------------
Q 037859 203 EHPATFDTLAMETKKKEEIKKDL-----KKGYLLYGPPGTGKSTMIAAMANFLNY------------------------- 252 (504)
Q Consensus 203 ~~p~~f~~~~~~~~~k~~i~~~l-----~rg~LL~GPpGtGKTsla~aiA~~l~~------------------------- 252 (504)
.+|.+|++|++++..++.|...+ +..|||+||+|||||++|+.+|+.+++
T Consensus 10 YRPqtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~a 89 (700)
T PRK12323 10 WRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDA 89 (700)
T ss_pred hCCCcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHc
Confidence 37999999999999999998888 556999999999999999999999976
Q ss_pred ----cEEEEeccccCChHHHHHHHHhc------cCCeEEEEecccccccccccccccccccccccccCcccccccccCCC
Q 037859 253 ----DVYDLELTTVQDNSELRSLLIDT------SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGS 322 (504)
Q Consensus 253 ----~i~~l~~~~~~~~~~l~~l~~~~------~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (504)
+++.++..+-.+.++++.++... ....|+||||+|.+
T Consensus 90 G~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~L--------------------------------- 136 (700)
T PRK12323 90 GRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHML--------------------------------- 136 (700)
T ss_pred CCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhc---------------------------------
Confidence 45555554434456677766553 24679999999986
Q ss_pred cchhhHHHHHhhhhcCccccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCcC
Q 037859 323 KKSKVTLSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDID 394 (504)
Q Consensus 323 ~~~~~~ls~lL~~lDg~~~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~~ 394 (504)
+....+.||..|+.- .+.++||++||.+.+|.+.+++ |+ .++.|..++.++....++..+..+
T Consensus 137 --s~~AaNALLKTLEEP----P~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~E 199 (700)
T PRK12323 137 --TNHAFNAMLKTLEEP----PEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEE 199 (700)
T ss_pred --CHHHHHHHHHhhccC----CCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHc
Confidence 234678899988753 3567899999999999999999 88 789999999999888888776543
No 50
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.67 E-value=1.2e-15 Score=166.07 Aligned_cols=148 Identities=16% Similarity=0.278 Sum_probs=118.6
Q ss_pred CCccccccccChhHHHHHHHhh-----cccccccCCCCCcHHHHHHHHHHhcCC------------------------cE
Q 037859 204 HPATFDTLAMETKKKEEIKKDL-----KKGYLLYGPPGTGKSTMIAAMANFLNY------------------------DV 254 (504)
Q Consensus 204 ~p~~f~~~~~~~~~k~~i~~~l-----~rg~LL~GPpGtGKTsla~aiA~~l~~------------------------~i 254 (504)
+|.+|+++++++..++.|...+ +..||||||+|||||++++++|+.+++ ++
T Consensus 11 RPqtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~Dv 90 (830)
T PRK07003 11 RPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDY 90 (830)
T ss_pred CCCcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceE
Confidence 6999999999999999998888 456899999999999999999998865 35
Q ss_pred EEEeccccCChHHHHHHHHhc------cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhH
Q 037859 255 YDLELTTVQDNSELRSLLIDT------SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVT 328 (504)
Q Consensus 255 ~~l~~~~~~~~~~l~~l~~~~------~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (504)
+.++..+-.+.++++.++... ....|+||||+|.+ +...
T Consensus 91 iEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~L-----------------------------------T~~A 135 (830)
T PRK07003 91 VEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHML-----------------------------------TNHA 135 (830)
T ss_pred EEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhC-----------------------------------CHHH
Confidence 555554333445677776553 24579999999986 1235
Q ss_pred HHHHhhhhcCccccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCc
Q 037859 329 LSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDI 393 (504)
Q Consensus 329 ls~lL~~lDg~~~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~ 393 (504)
.+.||..|+.. ...++||++||.+++|.+.|++ |+ .++.|..++.++....++..+..
T Consensus 136 ~NALLKtLEEP----P~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~ 193 (830)
T PRK07003 136 FNAMLKTLEEP----PPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGE 193 (830)
T ss_pred HHHHHHHHHhc----CCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHH
Confidence 67888888754 3458899999999999999999 98 78999999999988888877643
No 51
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.67 E-value=4.8e-16 Score=163.30 Aligned_cols=148 Identities=16% Similarity=0.343 Sum_probs=114.6
Q ss_pred CCCccccccccChhHHHHHHHhh-----cccccccCCCCCcHHHHHHHHHHhcCC------------------------c
Q 037859 203 EHPATFDTLAMETKKKEEIKKDL-----KKGYLLYGPPGTGKSTMIAAMANFLNY------------------------D 253 (504)
Q Consensus 203 ~~p~~f~~~~~~~~~k~~i~~~l-----~rg~LL~GPpGtGKTsla~aiA~~l~~------------------------~ 253 (504)
.+|.+|+++++++...+.+...+ +..||||||||||||++|+++|+.+++ +
T Consensus 12 yRP~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~d 91 (484)
T PRK14956 12 YRPQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSD 91 (484)
T ss_pred hCCCCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCcc
Confidence 36999999999999988888877 345899999999999999999999876 2
Q ss_pred EEEEeccccCChHHHHHHHHhc------cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhh
Q 037859 254 VYDLELTTVQDNSELRSLLIDT------SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKV 327 (504)
Q Consensus 254 i~~l~~~~~~~~~~l~~l~~~~------~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (504)
++.++...-.+.+.++.+.... ....|+||||+|.+ +..
T Consensus 92 viEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~L-----------------------------------s~~ 136 (484)
T PRK14956 92 VLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHML-----------------------------------TDQ 136 (484)
T ss_pred ceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhc-----------------------------------CHH
Confidence 4555543323344555554332 24579999999986 233
Q ss_pred HHHHHhhhhcCccccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcC
Q 037859 328 TLSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLD 392 (504)
Q Consensus 328 ~ls~lL~~lDg~~~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~ 392 (504)
.++.||..|+.- ...+++|++||.++.|.+++++ |+ .++.|..++.++....++..+.
T Consensus 137 A~NALLKtLEEP----p~~viFILaTte~~kI~~TI~S--RC-q~~~f~~ls~~~i~~~L~~i~~ 194 (484)
T PRK14956 137 SFNALLKTLEEP----PAHIVFILATTEFHKIPETILS--RC-QDFIFKKVPLSVLQDYSEKLCK 194 (484)
T ss_pred HHHHHHHHhhcC----CCceEEEeecCChhhccHHHHh--hh-heeeecCCCHHHHHHHHHHHHH
Confidence 678888888753 3568899999999999999999 98 5799999988887777776643
No 52
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.67 E-value=6.7e-16 Score=164.22 Aligned_cols=147 Identities=24% Similarity=0.373 Sum_probs=113.9
Q ss_pred CCCccccccccChhHHHHHHHhh-----cccccccCCCCCcHHHHHHHHHHhcCC------------------------c
Q 037859 203 EHPATFDTLAMETKKKEEIKKDL-----KKGYLLYGPPGTGKSTMIAAMANFLNY------------------------D 253 (504)
Q Consensus 203 ~~p~~f~~~~~~~~~k~~i~~~l-----~rg~LL~GPpGtGKTsla~aiA~~l~~------------------------~ 253 (504)
.+|.+|+++++++..++.+...+ +.+||||||||||||++|+++|+.+++ +
T Consensus 8 yRP~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~d 87 (472)
T PRK14962 8 YRPKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMD 87 (472)
T ss_pred HCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCc
Confidence 36999999999999988887777 456899999999999999999999875 4
Q ss_pred EEEEeccccCChHHHHHHHHhc------cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhh
Q 037859 254 VYDLELTTVQDNSELRSLLIDT------SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKV 327 (504)
Q Consensus 254 i~~l~~~~~~~~~~l~~l~~~~------~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (504)
++.++.+.-.+...++++.... ..+.||+|||+|.+- ..
T Consensus 88 v~el~aa~~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt-----------------------------------~~ 132 (472)
T PRK14962 88 VIELDAASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLT-----------------------------------KE 132 (472)
T ss_pred cEEEeCcccCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhH-----------------------------------HH
Confidence 6666665434445666655433 245799999999861 22
Q ss_pred HHHHHhhhhcCccccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhc
Q 037859 328 TLSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYL 391 (504)
Q Consensus 328 ~ls~lL~~lDg~~~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l 391 (504)
.+..||..++.. ++.+++|++||.++.++++|.+ |+ ..+.|..++.++...+++...
T Consensus 133 a~~~LLk~LE~p----~~~vv~Ilattn~~kl~~~L~S--R~-~vv~f~~l~~~el~~~L~~i~ 189 (472)
T PRK14962 133 AFNALLKTLEEP----PSHVVFVLATTNLEKVPPTIIS--RC-QVIEFRNISDELIIKRLQEVA 189 (472)
T ss_pred HHHHHHHHHHhC----CCcEEEEEEeCChHhhhHHHhc--Cc-EEEEECCccHHHHHHHHHHHH
Confidence 457788888753 3457778888888899999999 88 579999999988887777654
No 53
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.66 E-value=7.2e-16 Score=152.81 Aligned_cols=152 Identities=18% Similarity=0.276 Sum_probs=107.0
Q ss_pred ccccccChhHHHHHHHhh-------------------cccccccCCCCCcHHHHHHHHHHhc---C----CcEEEEeccc
Q 037859 208 FDTLAMETKKKEEIKKDL-------------------KKGYLLYGPPGTGKSTMIAAMANFL---N----YDVYDLELTT 261 (504)
Q Consensus 208 f~~~~~~~~~k~~i~~~l-------------------~rg~LL~GPpGtGKTsla~aiA~~l---~----~~i~~l~~~~ 261 (504)
++.+++-+.+|++|.+.+ ..++|||||||||||++|+++|+.+ + .+++.++++.
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~ 84 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERAD 84 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHH
Confidence 456777777887765443 2347999999999999999999875 2 2455665554
Q ss_pred cC------ChHHHHHHHHhccCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhh
Q 037859 262 VQ------DNSELRSLLIDTSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNF 335 (504)
Q Consensus 262 ~~------~~~~l~~l~~~~~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ 335 (504)
+. ....++.+|..+ .++||||||+|.+.. + +........+..|+..
T Consensus 85 l~~~~~g~~~~~~~~~~~~a-~~~VL~IDE~~~L~~--~-------------------------~~~~~~~~~i~~Ll~~ 136 (261)
T TIGR02881 85 LVGEYIGHTAQKTREVIKKA-LGGVLFIDEAYSLAR--G-------------------------GEKDFGKEAIDTLVKG 136 (261)
T ss_pred hhhhhccchHHHHHHHHHhc-cCCEEEEechhhhcc--C-------------------------CccchHHHHHHHHHHH
Confidence 32 234556666554 468999999999731 0 0111234467778888
Q ss_pred hcCccccCCCceEEEEecCCCC-----CCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCc
Q 037859 336 IDGLWSASGEERIIVFTTNYVD-----KLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDI 393 (504)
Q Consensus 336 lDg~~~~~~~~~ivI~tTN~~e-----~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~ 393 (504)
|+.. +...++|++++..+ .++|+|.+ ||+.+|+|+.++.+++..|++.++..
T Consensus 137 ~e~~----~~~~~vila~~~~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~ 193 (261)
T TIGR02881 137 MEDN----RNEFVLILAGYSDEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKE 193 (261)
T ss_pred Hhcc----CCCEEEEecCCcchhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHH
Confidence 8764 23456666654333 37899999 99999999999999999999988753
No 54
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=7.9e-16 Score=165.79 Aligned_cols=148 Identities=20% Similarity=0.341 Sum_probs=118.3
Q ss_pred CCccccccccChhHHHHHHHhh-----cccccccCCCCCcHHHHHHHHHHhcCC------------------------cE
Q 037859 204 HPATFDTLAMETKKKEEIKKDL-----KKGYLLYGPPGTGKSTMIAAMANFLNY------------------------DV 254 (504)
Q Consensus 204 ~p~~f~~~~~~~~~k~~i~~~l-----~rg~LL~GPpGtGKTsla~aiA~~l~~------------------------~i 254 (504)
+|.+|+++++++..++.|...+ +.+|||+||||||||++|+++|+.+++ ++
T Consensus 10 RPktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDv 89 (702)
T PRK14960 10 RPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDL 89 (702)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCce
Confidence 6899999999999999988888 567999999999999999999999875 56
Q ss_pred EEEeccccCChHHHHHHHHhc------cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhH
Q 037859 255 YDLELTTVQDNSELRSLLIDT------SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVT 328 (504)
Q Consensus 255 ~~l~~~~~~~~~~l~~l~~~~------~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (504)
+.++.++-.....++.++... .+..|++|||+|.+ +...
T Consensus 90 iEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~L-----------------------------------S~~A 134 (702)
T PRK14960 90 IEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHML-----------------------------------STHS 134 (702)
T ss_pred EEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhc-----------------------------------CHHH
Confidence 666665444556777776654 24579999999986 1235
Q ss_pred HHHHhhhhcCccccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCc
Q 037859 329 LSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDI 393 (504)
Q Consensus 329 ls~lL~~lDg~~~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~ 393 (504)
.+.||..|+.. .+.+.+|++||.+.++++.+++ |+ .++.|..++.++....++..+..
T Consensus 135 ~NALLKtLEEP----P~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~k 192 (702)
T PRK14960 135 FNALLKTLEEP----PEHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEK 192 (702)
T ss_pred HHHHHHHHhcC----CCCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHH
Confidence 67788888753 3456888888889999999998 88 68999999999888877766643
No 55
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.64 E-value=1.4e-15 Score=146.82 Aligned_cols=153 Identities=20% Similarity=0.267 Sum_probs=124.1
Q ss_pred cCCCccccccccChhHHHHHHHhh---------cccccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccCChHHHHHHH
Q 037859 202 FEHPATFDTLAMETKKKEEIKKDL---------KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQDNSELRSLL 272 (504)
Q Consensus 202 ~~~p~~f~~~~~~~~~k~~i~~~l---------~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~~l~~l~ 272 (504)
..+|..|+++++++++|+.+--.+ .-.+|||||||.||||||..||+++|.++-..+...+....+|..++
T Consensus 19 ~lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~gDlaaiL 98 (332)
T COG2255 19 SLRPKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKPGDLAAIL 98 (332)
T ss_pred ccCcccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccChhhHHHHH
Confidence 346899999999999999887777 23489999999999999999999999999988888888889999999
Q ss_pred HhccCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCcc--------ccC-
Q 037859 273 IDTSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLW--------SAS- 343 (504)
Q Consensus 273 ~~~~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~--------~~~- 343 (504)
......-|+|||||+.+-+ .+---|--.|+.+. ...
T Consensus 99 t~Le~~DVLFIDEIHrl~~-----------------------------------~vEE~LYpaMEDf~lDI~IG~gp~Ar 143 (332)
T COG2255 99 TNLEEGDVLFIDEIHRLSP-----------------------------------AVEEVLYPAMEDFRLDIIIGKGPAAR 143 (332)
T ss_pred hcCCcCCeEEEehhhhcCh-----------------------------------hHHHHhhhhhhheeEEEEEccCCccc
Confidence 9999999999999998621 01111112222110 000
Q ss_pred -----CCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhc
Q 037859 344 -----GEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYL 391 (504)
Q Consensus 344 -----~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l 391 (504)
-....+|++|.+...|...|.. ||.+...+.+.+.++...|+++.-
T Consensus 144 sv~ldLppFTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a 194 (332)
T COG2255 144 SIRLDLPPFTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSA 194 (332)
T ss_pred eEeccCCCeeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHH
Confidence 1335799999999999999999 999999999999999999998764
No 56
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=6.1e-15 Score=152.95 Aligned_cols=148 Identities=20% Similarity=0.330 Sum_probs=112.5
Q ss_pred CCccccccccChhHHHHHHHhh-----cccccccCCCCCcHHHHHHHHHHhcCC------------------------cE
Q 037859 204 HPATFDTLAMETKKKEEIKKDL-----KKGYLLYGPPGTGKSTMIAAMANFLNY------------------------DV 254 (504)
Q Consensus 204 ~p~~f~~~~~~~~~k~~i~~~l-----~rg~LL~GPpGtGKTsla~aiA~~l~~------------------------~i 254 (504)
.|.+|+++++++..++.+...+ +..|||+||||||||++|+++|+.+++ ++
T Consensus 11 rP~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~ 90 (363)
T PRK14961 11 RPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDL 90 (363)
T ss_pred CCCchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 5889999999999999888877 556899999999999999999998863 34
Q ss_pred EEEeccccCChHHHHHHHHhc------cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhH
Q 037859 255 YDLELTTVQDNSELRSLLIDT------SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVT 328 (504)
Q Consensus 255 ~~l~~~~~~~~~~l~~l~~~~------~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (504)
+.++...-.....++.++... ....|++|||+|.+ +...
T Consensus 91 ~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l-----------------------------------~~~a 135 (363)
T PRK14961 91 IEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHML-----------------------------------SRHS 135 (363)
T ss_pred EEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhc-----------------------------------CHHH
Confidence 444443323345566665543 24569999999985 1224
Q ss_pred HHHHhhhhcCccccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCc
Q 037859 329 LSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDI 393 (504)
Q Consensus 329 ls~lL~~lDg~~~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~ 393 (504)
.+.||..++.. +....+|++|+.++.+.+++.. |+ ..++|+.++.++...+++..+..
T Consensus 136 ~naLLk~lEe~----~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~ 193 (363)
T PRK14961 136 FNALLKTLEEP----PQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIK 193 (363)
T ss_pred HHHHHHHHhcC----CCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHH
Confidence 56788887753 3456788888888999999998 87 68999999999998888776543
No 57
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.63 E-value=6.4e-16 Score=173.71 Aligned_cols=154 Identities=23% Similarity=0.336 Sum_probs=116.3
Q ss_pred CCccccccccChhHHHHHHHhh----cccccccCCCCCcHHHHHHHHHHhc----------CCcEEEEeccccCC-----
Q 037859 204 HPATFDTLAMETKKKEEIKKDL----KKGYLLYGPPGTGKSTMIAAMANFL----------NYDVYDLELTTVQD----- 264 (504)
Q Consensus 204 ~p~~f~~~~~~~~~k~~i~~~l----~rg~LL~GPpGtGKTsla~aiA~~l----------~~~i~~l~~~~~~~----- 264 (504)
.|..++.+++.++..++++..+ +.++||+||||||||++++++|..+ +..++.++++.+..
T Consensus 177 r~~~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~ 256 (731)
T TIGR02639 177 KNGKIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYR 256 (731)
T ss_pred hcCCCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhcccc
Confidence 5777999999999888888777 5679999999999999999999987 78899999776532
Q ss_pred ---hHHHHHHHHhcc--CCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCc
Q 037859 265 ---NSELRSLLIDTS--SKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGL 339 (504)
Q Consensus 265 ---~~~l~~l~~~~~--~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~ 339 (504)
...++++|..+. .++||||||||.++.. +. ..++ .....+-|+..+.
T Consensus 257 g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~---g~--------------------~~~~---~~~~~~~L~~~l~-- 308 (731)
T TIGR02639 257 GDFEERLKAVVSEIEKEPNAILFIDEIHTIVGA---GA--------------------TSGG---SMDASNLLKPALS-- 308 (731)
T ss_pred chHHHHHHHHHHHHhccCCeEEEEecHHHHhcc---CC--------------------CCCc---cHHHHHHHHHHHh--
Confidence 257888887653 5899999999998631 10 0001 1111222333332
Q ss_pred cccCCCceEEEEecCCCC-----CCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcC
Q 037859 340 WSASGEERIIVFTTNYVD-----KLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLD 392 (504)
Q Consensus 340 ~~~~~~~~ivI~tTN~~e-----~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~ 392 (504)
.+++.+|++||..+ .+|+||.| ||+ .|+++.|+.+++..|++....
T Consensus 309 ----~g~i~~IgaTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~ 359 (731)
T TIGR02639 309 ----SGKLRCIGSTTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKE 359 (731)
T ss_pred ----CCCeEEEEecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHH
Confidence 35688999998744 47999999 996 799999999999999996553
No 58
>CHL00181 cbbX CbbX; Provisional
Probab=99.62 E-value=1.8e-15 Score=151.56 Aligned_cols=152 Identities=18% Similarity=0.285 Sum_probs=106.7
Q ss_pred cccccChhHHHHHHHhh-----------------ccc--ccccCCCCCcHHHHHHHHHHhcC-------CcEEEEecccc
Q 037859 209 DTLAMETKKKEEIKKDL-----------------KKG--YLLYGPPGTGKSTMIAAMANFLN-------YDVYDLELTTV 262 (504)
Q Consensus 209 ~~~~~~~~~k~~i~~~l-----------------~rg--~LL~GPpGtGKTsla~aiA~~l~-------~~i~~l~~~~~ 262 (504)
+.+++.+.+|++|.+.+ ..| +||+||||||||++|+++|..+. .+++.++...+
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l 102 (287)
T CHL00181 23 EELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDL 102 (287)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHH
Confidence 35677777777665443 134 79999999999999999998752 24676665443
Q ss_pred C------ChHHHHHHHHhccCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhh
Q 037859 263 Q------DNSELRSLLIDTSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFI 336 (504)
Q Consensus 263 ~------~~~~l~~l~~~~~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~l 336 (504)
. +......+|..+ .++||||||+|.+.. .+ +....+...+..|+..|
T Consensus 103 ~~~~~g~~~~~~~~~l~~a-~ggVLfIDE~~~l~~---~~-----------------------~~~~~~~e~~~~L~~~m 155 (287)
T CHL00181 103 VGQYIGHTAPKTKEVLKKA-MGGVLFIDEAYYLYK---PD-----------------------NERDYGSEAIEILLQVM 155 (287)
T ss_pred HHHHhccchHHHHHHHHHc-cCCEEEEEccchhcc---CC-----------------------CccchHHHHHHHHHHHH
Confidence 1 223445556554 568999999998642 00 01123455677888888
Q ss_pred cCccccCCCceEEEEecCCCC-----CCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCc
Q 037859 337 DGLWSASGEERIIVFTTNYVD-----KLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDI 393 (504)
Q Consensus 337 Dg~~~~~~~~~ivI~tTN~~e-----~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~ 393 (504)
+.. ...++||++++... .++|+|.+ ||+.+|+|+.++.+++..|++.++..
T Consensus 156 e~~----~~~~~vI~ag~~~~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~ 211 (287)
T CHL00181 156 ENQ----RDDLVVIFAGYKDRMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEE 211 (287)
T ss_pred hcC----CCCEEEEEeCCcHHHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHH
Confidence 753 24467777775322 34699999 99999999999999999999999854
No 59
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.62 E-value=4.2e-15 Score=158.81 Aligned_cols=149 Identities=21% Similarity=0.371 Sum_probs=117.1
Q ss_pred CCCccccccccChhHHHHHHHhh-----cccccccCCCCCcHHHHHHHHHHhcCC-------------------------
Q 037859 203 EHPATFDTLAMETKKKEEIKKDL-----KKGYLLYGPPGTGKSTMIAAMANFLNY------------------------- 252 (504)
Q Consensus 203 ~~p~~f~~~~~~~~~k~~i~~~l-----~rg~LL~GPpGtGKTsla~aiA~~l~~------------------------- 252 (504)
.+|.+|+++++++...+.+...+ +.+|||+||||||||++|+++|+.+++
T Consensus 15 yRP~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~ 94 (507)
T PRK06645 15 YRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNH 94 (507)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcC
Confidence 47999999999999998887766 467999999999999999999999865
Q ss_pred ---cEEEEeccccCChHHHHHHHHhc------cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCc
Q 037859 253 ---DVYDLELTTVQDNSELRSLLIDT------SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSK 323 (504)
Q Consensus 253 ---~i~~l~~~~~~~~~~l~~l~~~~------~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (504)
+++.++..+-.+..+++.++..+ ....|++|||+|.+
T Consensus 95 ~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~L---------------------------------- 140 (507)
T PRK06645 95 NHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHML---------------------------------- 140 (507)
T ss_pred CCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhc----------------------------------
Confidence 34444444334556777777654 24679999999986
Q ss_pred chhhHHHHHhhhhcCccccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCc
Q 037859 324 KSKVTLSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDI 393 (504)
Q Consensus 324 ~~~~~ls~lL~~lDg~~~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~ 393 (504)
+...++.||..|+.. +...++|++|+.++++++++.+ |+ ..++|..++.++...+++..+..
T Consensus 141 -s~~a~naLLk~LEep----p~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~ 202 (507)
T PRK06645 141 -SKGAFNALLKTLEEP----PPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQ 202 (507)
T ss_pred -CHHHHHHHHHHHhhc----CCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHH
Confidence 123567788888743 3557888888999999999999 88 68999999999988888777643
No 60
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=2.8e-15 Score=161.06 Aligned_cols=147 Identities=17% Similarity=0.302 Sum_probs=116.0
Q ss_pred CCccccccccChhHHHHHHHhh-----cccccccCCCCCcHHHHHHHHHHhcCCc------------------------E
Q 037859 204 HPATFDTLAMETKKKEEIKKDL-----KKGYLLYGPPGTGKSTMIAAMANFLNYD------------------------V 254 (504)
Q Consensus 204 ~p~~f~~~~~~~~~k~~i~~~l-----~rg~LL~GPpGtGKTsla~aiA~~l~~~------------------------i 254 (504)
+|.+|+++++++..++.+...+ +..|||+||||||||++|+++|+.+++. +
T Consensus 11 RP~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~ 90 (509)
T PRK14958 11 RPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDL 90 (509)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceE
Confidence 6999999999999999998888 5669999999999999999999998652 6
Q ss_pred EEEeccccCChHHHHHHHHhc------cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhH
Q 037859 255 YDLELTTVQDNSELRSLLIDT------SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVT 328 (504)
Q Consensus 255 ~~l~~~~~~~~~~l~~l~~~~------~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (504)
+.++..+-...+.++.++... .+..|++|||+|.+ +...
T Consensus 91 ~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~l-----------------------------------s~~a 135 (509)
T PRK14958 91 FEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHML-----------------------------------SGHS 135 (509)
T ss_pred EEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhc-----------------------------------CHHH
Confidence 667765545556677776543 24569999999986 1235
Q ss_pred HHHHhhhhcCccccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcC
Q 037859 329 LSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLD 392 (504)
Q Consensus 329 ls~lL~~lDg~~~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~ 392 (504)
.+.||..|+.. .+.+++|++|+.+.++.+.++. |+ ..++|..++.++....++..+.
T Consensus 136 ~naLLk~LEep----p~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~ 192 (509)
T PRK14958 136 FNALLKTLEEP----PSHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLK 192 (509)
T ss_pred HHHHHHHHhcc----CCCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHH
Confidence 67889888854 3457788888889999999998 87 6789998888877666555543
No 61
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=4.8e-15 Score=157.24 Aligned_cols=148 Identities=17% Similarity=0.299 Sum_probs=119.5
Q ss_pred CCccccccccChhHHHHHHHhh-----cccccccCCCCCcHHHHHHHHHHhcC------------------------CcE
Q 037859 204 HPATFDTLAMETKKKEEIKKDL-----KKGYLLYGPPGTGKSTMIAAMANFLN------------------------YDV 254 (504)
Q Consensus 204 ~p~~f~~~~~~~~~k~~i~~~l-----~rg~LL~GPpGtGKTsla~aiA~~l~------------------------~~i 254 (504)
+|.+|+++++++..++.+...+ +.+|||+||||||||++|+.+|+.++ .++
T Consensus 8 RP~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 8 RPSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 6899999999999998887776 66799999999999999999998763 356
Q ss_pred EEEeccccCChHHHHHHHHhc------cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhH
Q 037859 255 YDLELTTVQDNSELRSLLIDT------SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVT 328 (504)
Q Consensus 255 ~~l~~~~~~~~~~l~~l~~~~------~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (504)
+.++.++-.+.++++.++... ...-|++|||+|.+ +...
T Consensus 88 ~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~L-----------------------------------s~~A 132 (491)
T PRK14964 88 IEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHML-----------------------------------SNSA 132 (491)
T ss_pred EEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhC-----------------------------------CHHH
Confidence 777776655667788777654 24679999999986 1235
Q ss_pred HHHHhhhhcCccccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCc
Q 037859 329 LSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDI 393 (504)
Q Consensus 329 ls~lL~~lDg~~~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~ 393 (504)
++.||..|+.. .+..++|++|+.+++|.+.++. |+ ..++|..++.++....+...+..
T Consensus 133 ~NaLLK~LEeP----p~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~~ 190 (491)
T PRK14964 133 FNALLKTLEEP----APHVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAKK 190 (491)
T ss_pred HHHHHHHHhCC----CCCeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHHH
Confidence 78899998864 3457888899999999999999 88 67999999998888887776543
No 62
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.61 E-value=3.7e-15 Score=150.18 Aligned_cols=143 Identities=26% Similarity=0.390 Sum_probs=108.7
Q ss_pred CCccccccccChhHH--HHHHH-hh----cccccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccCChHHHHHHHHhc-
Q 037859 204 HPATFDTLAMETKKK--EEIKK-DL----KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQDNSELRSLLIDT- 275 (504)
Q Consensus 204 ~p~~f~~~~~~~~~k--~~i~~-~l----~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~~l~~l~~~~- 275 (504)
+|++|+++++++++. ..++. .+ -..++|||||||||||+|+.||+.++.++..++...- +..+++.++.++
T Consensus 19 RP~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~-gvkdlr~i~e~a~ 97 (436)
T COG2256 19 RPKSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTS-GVKDLREIIEEAR 97 (436)
T ss_pred CCCCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccc-cHHHHHHHHHHHH
Confidence 599999999988654 12222 22 3458999999999999999999999999998875433 457888888776
Q ss_pred -----cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccCCCceEEE
Q 037859 276 -----SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERIIV 350 (504)
Q Consensus 276 -----~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~~~~ivI 350 (504)
.++.|||||||+.+ ++.-...||-.++ .+.+++|
T Consensus 98 ~~~~~gr~tiLflDEIHRf-----------------------------------nK~QQD~lLp~vE------~G~iilI 136 (436)
T COG2256 98 KNRLLGRRTILFLDEIHRF-----------------------------------NKAQQDALLPHVE------NGTIILI 136 (436)
T ss_pred HHHhcCCceEEEEehhhhc-----------------------------------Chhhhhhhhhhhc------CCeEEEE
Confidence 35899999999986 1223345666654 2457888
Q ss_pred Eec--CCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhc
Q 037859 351 FTT--NYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYL 391 (504)
Q Consensus 351 ~tT--N~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l 391 (504)
+|| |..-.|.+||+. |. +...+...+.++.++++++-+
T Consensus 137 GATTENPsF~ln~ALlS--R~-~vf~lk~L~~~di~~~l~ra~ 176 (436)
T COG2256 137 GATTENPSFELNPALLS--RA-RVFELKPLSSEDIKKLLKRAL 176 (436)
T ss_pred eccCCCCCeeecHHHhh--hh-heeeeecCCHHHHHHHHHHHH
Confidence 865 666689999999 77 678899999999999988843
No 63
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.60 E-value=2.8e-14 Score=160.22 Aligned_cols=148 Identities=22% Similarity=0.326 Sum_probs=115.5
Q ss_pred CCCccccccccChhHHHHHHHhh-----cccccccCCCCCcHHHHHHHHHHhcCC-------------------------
Q 037859 203 EHPATFDTLAMETKKKEEIKKDL-----KKGYLLYGPPGTGKSTMIAAMANFLNY------------------------- 252 (504)
Q Consensus 203 ~~p~~f~~~~~~~~~k~~i~~~l-----~rg~LL~GPpGtGKTsla~aiA~~l~~------------------------- 252 (504)
.+|.+|++|++++..++.|...+ +..||||||+|||||++|+.+|+.|++
T Consensus 9 yRP~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~ 88 (824)
T PRK07764 9 YRPATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGS 88 (824)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCC
Confidence 46899999999999999988888 456999999999999999999999964
Q ss_pred -cEEEEeccccCChHHHHHHHHhc------cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcch
Q 037859 253 -DVYDLELTTVQDNSELRSLLIDT------SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKS 325 (504)
Q Consensus 253 -~i~~l~~~~~~~~~~l~~l~~~~------~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (504)
+++.++.......++++.+.... ....|+||||+|.+ +
T Consensus 89 ~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~l-----------------------------------t 133 (824)
T PRK07764 89 LDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMV-----------------------------------T 133 (824)
T ss_pred CcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhc-----------------------------------C
Confidence 24444443333345566543322 35679999999996 2
Q ss_pred hhHHHHHhhhhcCccccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcC
Q 037859 326 KVTLSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLD 392 (504)
Q Consensus 326 ~~~ls~lL~~lDg~~~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~ 392 (504)
....+.||+.|+.. ....+||++|+.+++|-++|+. |+ .++.|..++.++...+++..+.
T Consensus 134 ~~a~NaLLK~LEEp----P~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~ 193 (824)
T PRK07764 134 PQGFNALLKIVEEP----PEHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICA 193 (824)
T ss_pred HHHHHHHHHHHhCC----CCCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHH
Confidence 23567899998864 3557888888999999999998 87 6899999999998888887664
No 64
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=7.1e-15 Score=162.74 Aligned_cols=147 Identities=18% Similarity=0.332 Sum_probs=113.4
Q ss_pred CCccccccccChhHHHHHHHhh-----cccccccCCCCCcHHHHHHHHHHhcCCc------------------------E
Q 037859 204 HPATFDTLAMETKKKEEIKKDL-----KKGYLLYGPPGTGKSTMIAAMANFLNYD------------------------V 254 (504)
Q Consensus 204 ~p~~f~~~~~~~~~k~~i~~~l-----~rg~LL~GPpGtGKTsla~aiA~~l~~~------------------------i 254 (504)
+|.+|+.+++++..++.|...+ +..||||||||||||++|+++|+.+++. +
T Consensus 11 RP~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dv 90 (944)
T PRK14949 11 RPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDL 90 (944)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceE
Confidence 5899999999999998888777 5569999999999999999999999763 1
Q ss_pred EEEeccccCChHHHHHHHHhc------cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhH
Q 037859 255 YDLELTTVQDNSELRSLLIDT------SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVT 328 (504)
Q Consensus 255 ~~l~~~~~~~~~~l~~l~~~~------~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (504)
+.++..+......+|.+.... ....|+||||+|.+ +...
T Consensus 91 iEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~L-----------------------------------T~eA 135 (944)
T PRK14949 91 IEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHML-----------------------------------SRSS 135 (944)
T ss_pred EEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhc-----------------------------------CHHH
Confidence 223332212334566555433 24579999999986 2447
Q ss_pred HHHHhhhhcCccccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcC
Q 037859 329 LSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLD 392 (504)
Q Consensus 329 ls~lL~~lDg~~~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~ 392 (504)
++.||..|+.. .+.+++|++|+.+.+|.++|+. |+ .++.|..++.++....+++.+.
T Consensus 136 qNALLKtLEEP----P~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~ 192 (944)
T PRK14949 136 FNALLKTLEEP----PEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILT 192 (944)
T ss_pred HHHHHHHHhcc----CCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHH
Confidence 78999999853 3457788888889999999999 88 7899999999988888777654
No 65
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.60 E-value=6.3e-15 Score=160.70 Aligned_cols=146 Identities=20% Similarity=0.330 Sum_probs=116.3
Q ss_pred CCccccccccChhHHHHHHHhh-----cccccccCCCCCcHHHHHHHHHHhcCC------------------------cE
Q 037859 204 HPATFDTLAMETKKKEEIKKDL-----KKGYLLYGPPGTGKSTMIAAMANFLNY------------------------DV 254 (504)
Q Consensus 204 ~p~~f~~~~~~~~~k~~i~~~l-----~rg~LL~GPpGtGKTsla~aiA~~l~~------------------------~i 254 (504)
+|.+|+++++++..++.+...+ +..|||+||||||||++|+++|+.+++ ++
T Consensus 11 RP~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ 90 (647)
T PRK07994 11 RPQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDL 90 (647)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCc
Confidence 6899999999999999888888 445899999999999999999999876 34
Q ss_pred EEEeccccCChHHHHHHHHhc------cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhH
Q 037859 255 YDLELTTVQDNSELRSLLIDT------SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVT 328 (504)
Q Consensus 255 ~~l~~~~~~~~~~l~~l~~~~------~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (504)
+.++..+-...+.++.+.... ...-|+||||+|.+ +...
T Consensus 91 ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~L-----------------------------------s~~a 135 (647)
T PRK07994 91 IEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHML-----------------------------------SRHS 135 (647)
T ss_pred eeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhC-----------------------------------CHHH
Confidence 455544323345666665543 24579999999986 2346
Q ss_pred HHHHhhhhcCccccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhc
Q 037859 329 LSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYL 391 (504)
Q Consensus 329 ls~lL~~lDg~~~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l 391 (504)
.+.||..|+.- .+.++||++|+.+++|.+.++. |+ .++.|..++.++....+++.+
T Consensus 136 ~NALLKtLEEP----p~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il 191 (647)
T PRK07994 136 FNALLKTLEEP----PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHIL 191 (647)
T ss_pred HHHHHHHHHcC----CCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHH
Confidence 78899988753 3557788888889999999999 87 799999999999888887765
No 66
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.60 E-value=4.4e-15 Score=148.77 Aligned_cols=151 Identities=17% Similarity=0.237 Sum_probs=107.3
Q ss_pred ccccChhHHHHHHHhh-------------------cccccccCCCCCcHHHHHHHHHHhcC-------CcEEEEeccccC
Q 037859 210 TLAMETKKKEEIKKDL-------------------KKGYLLYGPPGTGKSTMIAAMANFLN-------YDVYDLELTTVQ 263 (504)
Q Consensus 210 ~~~~~~~~k~~i~~~l-------------------~rg~LL~GPpGtGKTsla~aiA~~l~-------~~i~~l~~~~~~ 263 (504)
.+++-+++|++|.+.. ..++||+||||||||++|+++|..+. -+++.+++..+.
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~ 102 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLV 102 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHh
Confidence 4666677777665532 23689999999999999999998763 257777654431
Q ss_pred ------ChHHHHHHHHhccCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhc
Q 037859 264 ------DNSELRSLLIDTSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFID 337 (504)
Q Consensus 264 ------~~~~l~~l~~~~~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lD 337 (504)
+...++.+|..+ .++||||||+|.+.. .+ ............|+..|+
T Consensus 103 ~~~~g~~~~~~~~~~~~a-~~gvL~iDEi~~L~~---~~-----------------------~~~~~~~~~~~~Ll~~le 155 (284)
T TIGR02880 103 GQYIGHTAPKTKEILKRA-MGGVLFIDEAYYLYR---PD-----------------------NERDYGQEAIEILLQVME 155 (284)
T ss_pred HhhcccchHHHHHHHHHc-cCcEEEEechhhhcc---CC-----------------------CccchHHHHHHHHHHHHh
Confidence 234455666654 569999999998631 10 011234456778888887
Q ss_pred CccccCCCceEEEEecCCC--C---CCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCc
Q 037859 338 GLWSASGEERIIVFTTNYV--D---KLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDI 393 (504)
Q Consensus 338 g~~~~~~~~~ivI~tTN~~--e---~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~ 393 (504)
.. ..++++|++++.. + .++|+|.+ ||+.+|+|+.++.+++..|+++++..
T Consensus 156 ~~----~~~~~vI~a~~~~~~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~ 210 (284)
T TIGR02880 156 NQ----RDDLVVILAGYKDRMDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKE 210 (284)
T ss_pred cC----CCCEEEEEeCCcHHHHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHH
Confidence 43 3456777776532 3 25899999 99999999999999999999999854
No 67
>PRK04195 replication factor C large subunit; Provisional
Probab=99.59 E-value=1.2e-14 Score=156.28 Aligned_cols=150 Identities=21% Similarity=0.346 Sum_probs=115.8
Q ss_pred CCCccccccccChhHHHHHHHhh--------cccccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccCChHHHHHHHHh
Q 037859 203 EHPATFDTLAMETKKKEEIKKDL--------KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQDNSELRSLLID 274 (504)
Q Consensus 203 ~~p~~f~~~~~~~~~k~~i~~~l--------~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~~l~~l~~~ 274 (504)
..|.+|+.++++++.++.+...+ ++++|||||||||||++|+++|++++++++.++.+.......++.+...
T Consensus 8 yrP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~~~i~~~i~~ 87 (482)
T PRK04195 8 YRPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTADVIERVAGE 87 (482)
T ss_pred cCCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccHHHHHHHHHH
Confidence 46899999999999999888876 4679999999999999999999999999999998877665666665543
Q ss_pred c--------cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccCCCc
Q 037859 275 T--------SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEE 346 (504)
Q Consensus 275 ~--------~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~~~ 346 (504)
. ..+.||+|||+|.+.. . .....+..|++.++.. .
T Consensus 88 ~~~~~sl~~~~~kvIiIDEaD~L~~---~----------------------------~d~~~~~aL~~~l~~~------~ 130 (482)
T PRK04195 88 AATSGSLFGARRKLILLDEVDGIHG---N----------------------------EDRGGARAILELIKKA------K 130 (482)
T ss_pred hhccCcccCCCCeEEEEecCccccc---c----------------------------cchhHHHHHHHHHHcC------C
Confidence 3 1578999999998631 0 0112345666666521 2
Q ss_pred eEEEEecCCCCCCCh-hhhcCCCceeEEEecCCCHHHHHHHHHHhcC
Q 037859 347 RIIVFTTNYVDKLDP-ALIRRGRMDKHIEMSYCCFEAFKVLAKNYLD 392 (504)
Q Consensus 347 ~ivI~tTN~~e~Ld~-ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~ 392 (504)
..+|++||.+..+++ .|.+ |+ ..|.|+.|+.+++..+++..+.
T Consensus 131 ~~iIli~n~~~~~~~k~Lrs--r~-~~I~f~~~~~~~i~~~L~~i~~ 174 (482)
T PRK04195 131 QPIILTANDPYDPSLRELRN--AC-LMIEFKRLSTRSIVPVLKRICR 174 (482)
T ss_pred CCEEEeccCccccchhhHhc--cc-eEEEecCCCHHHHHHHHHHHHH
Confidence 357778898888887 5555 55 6899999999999888887764
No 68
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.59 E-value=7.4e-15 Score=159.64 Aligned_cols=148 Identities=19% Similarity=0.330 Sum_probs=116.4
Q ss_pred CCccccccccChhHHHHHHHhh-----cccccccCCCCCcHHHHHHHHHHhcCCc------------------------E
Q 037859 204 HPATFDTLAMETKKKEEIKKDL-----KKGYLLYGPPGTGKSTMIAAMANFLNYD------------------------V 254 (504)
Q Consensus 204 ~p~~f~~~~~~~~~k~~i~~~l-----~rg~LL~GPpGtGKTsla~aiA~~l~~~------------------------i 254 (504)
+|.+|+++++++..++.|...+ +.+|||+||||||||++|+++|+.+++. +
T Consensus 11 RP~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~Dv 90 (709)
T PRK08691 11 RPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDL 90 (709)
T ss_pred CCCCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccce
Confidence 6899999999999999888887 5679999999999999999999987642 3
Q ss_pred EEEeccccCChHHHHHHHHhc------cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhH
Q 037859 255 YDLELTTVQDNSELRSLLIDT------SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVT 328 (504)
Q Consensus 255 ~~l~~~~~~~~~~l~~l~~~~------~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (504)
+.++..+-.+...++.++... ....|+||||+|.+ +...
T Consensus 91 lEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~L-----------------------------------s~~A 135 (709)
T PRK08691 91 LEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHML-----------------------------------SKSA 135 (709)
T ss_pred EEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECcccc-----------------------------------CHHH
Confidence 444444334455677776543 34679999999975 1235
Q ss_pred HHHHhhhhcCccccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCc
Q 037859 329 LSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDI 393 (504)
Q Consensus 329 ls~lL~~lDg~~~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~ 393 (504)
++.||..|+.. .+.+++|++||.+.++.+.++. |+ ..+.|..++.++....++..+..
T Consensus 136 ~NALLKtLEEP----p~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~k 193 (709)
T PRK08691 136 FNAMLKTLEEP----PEHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDS 193 (709)
T ss_pred HHHHHHHHHhC----CCCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHH
Confidence 67888888753 3457888899999999999987 88 68899999999988888777654
No 69
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.59 E-value=5.2e-15 Score=167.76 Aligned_cols=152 Identities=20% Similarity=0.277 Sum_probs=112.7
Q ss_pred CCccccccccChhHHHHHHHhh----cccccccCCCCCcHHHHHHHHHHhc----------CCcEEEEeccccCC-----
Q 037859 204 HPATFDTLAMETKKKEEIKKDL----KKGYLLYGPPGTGKSTMIAAMANFL----------NYDVYDLELTTVQD----- 264 (504)
Q Consensus 204 ~p~~f~~~~~~~~~k~~i~~~l----~rg~LL~GPpGtGKTsla~aiA~~l----------~~~i~~l~~~~~~~----- 264 (504)
.|..++.+++.++...+++..+ +.+.+|+||||||||++|+++|..+ +.+++.++++.+..
T Consensus 182 r~~~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ 261 (852)
T TIGR03345 182 REGKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVK 261 (852)
T ss_pred cCCCCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccc
Confidence 5778999999999888888876 5679999999999999999999876 35688888876531
Q ss_pred ---hHHHHHHHHhc---cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcC
Q 037859 265 ---NSELRSLLIDT---SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDG 338 (504)
Q Consensus 265 ---~~~l~~l~~~~---~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg 338 (504)
..+++.++.+. ..++||||||||.++...+. .+.. ...+-|+..+
T Consensus 262 ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~------------------------~~~~---d~~n~Lkp~l-- 312 (852)
T TIGR03345 262 GEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQ------------------------AGQG---DAANLLKPAL-- 312 (852)
T ss_pred hHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCc------------------------cccc---cHHHHhhHHh--
Confidence 14677788765 35899999999998531110 0111 1112233332
Q ss_pred ccccCCCceEEEEecCCCCC-----CChhhhcCCCceeEEEecCCCHHHHHHHHHHhc
Q 037859 339 LWSASGEERIIVFTTNYVDK-----LDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYL 391 (504)
Q Consensus 339 ~~~~~~~~~ivI~tTN~~e~-----Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l 391 (504)
..+.+.+|+||+..+. +||||.| ||. .|.++.|+.++...|++.+.
T Consensus 313 ----~~G~l~~IgaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~ 363 (852)
T TIGR03345 313 ----ARGELRTIAATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLA 363 (852)
T ss_pred ----hCCCeEEEEecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHH
Confidence 2466889999987543 8999999 995 89999999999999976554
No 70
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.59 E-value=3.9e-15 Score=169.22 Aligned_cols=153 Identities=19% Similarity=0.286 Sum_probs=115.7
Q ss_pred CCccccccccChhHHHHHHHhh----cccccccCCCCCcHHHHHHHHHHhc----------CCcEEEEeccccCC-----
Q 037859 204 HPATFDTLAMETKKKEEIKKDL----KKGYLLYGPPGTGKSTMIAAMANFL----------NYDVYDLELTTVQD----- 264 (504)
Q Consensus 204 ~p~~f~~~~~~~~~k~~i~~~l----~rg~LL~GPpGtGKTsla~aiA~~l----------~~~i~~l~~~~~~~----- 264 (504)
.|..++.+++.+...+++++-| +..++|+||||||||++|+++|..+ +++++.++++.+..
T Consensus 173 r~~~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~ 252 (857)
T PRK10865 173 EQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYR 252 (857)
T ss_pred hcCCCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccchh
Confidence 4677999999999888888877 5579999999999999999999987 78999998887531
Q ss_pred ---hHHHHHHHHhc---cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcC
Q 037859 265 ---NSELRSLLIDT---SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDG 338 (504)
Q Consensus 265 ---~~~l~~l~~~~---~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg 338 (504)
...++.+|... ..++||||||||.++. .+. ..+. ...+.+|...
T Consensus 253 g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~---~~~---------------------~~~~----~d~~~~lkp~-- 302 (857)
T PRK10865 253 GEFEERLKGVLNDLAKQEGNVILFIDELHTMVG---AGK---------------------ADGA----MDAGNMLKPA-- 302 (857)
T ss_pred hhhHHHHHHHHHHHHHcCCCeEEEEecHHHhcc---CCC---------------------Cccc----hhHHHHhcch--
Confidence 23577777653 4689999999999852 110 0011 1123333221
Q ss_pred ccccCCCceEEEEecCCCCC-----CChhhhcCCCceeEEEecCCCHHHHHHHHHHhcC
Q 037859 339 LWSASGEERIIVFTTNYVDK-----LDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLD 392 (504)
Q Consensus 339 ~~~~~~~~~ivI~tTN~~e~-----Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~ 392 (504)
...+++.+|+||+..+. +|+||.| ||+ .|.++.|+.+++..|++.+..
T Consensus 303 ---l~~g~l~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~ 355 (857)
T PRK10865 303 ---LARGELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKE 355 (857)
T ss_pred ---hhcCCCeEEEcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhh
Confidence 12467899999998874 8999999 997 689999999999999887653
No 71
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.58 E-value=1.7e-14 Score=156.83 Aligned_cols=147 Identities=20% Similarity=0.368 Sum_probs=116.4
Q ss_pred CCccccccccChhHHHHHHHhh-----cccccccCCCCCcHHHHHHHHHHhcC------------------------CcE
Q 037859 204 HPATFDTLAMETKKKEEIKKDL-----KKGYLLYGPPGTGKSTMIAAMANFLN------------------------YDV 254 (504)
Q Consensus 204 ~p~~f~~~~~~~~~k~~i~~~l-----~rg~LL~GPpGtGKTsla~aiA~~l~------------------------~~i 254 (504)
+|.+|+.+++++..++.+...+ ++.||||||+|||||++|+.+|+.++ .++
T Consensus 11 rP~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~dv 90 (559)
T PRK05563 11 RPQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMDV 90 (559)
T ss_pred CCCcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCCe
Confidence 6899999999999999888887 55699999999999999999999875 345
Q ss_pred EEEeccccCChHHHHHHHHhc------cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhH
Q 037859 255 YDLELTTVQDNSELRSLLIDT------SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVT 328 (504)
Q Consensus 255 ~~l~~~~~~~~~~l~~l~~~~------~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (504)
+.++..+-.+.+.++.+.... ...-|++|||+|.+- ...
T Consensus 91 ~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt-----------------------------------~~a 135 (559)
T PRK05563 91 IEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLS-----------------------------------TGA 135 (559)
T ss_pred EEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC-----------------------------------HHH
Confidence 666665444556677766553 246799999999861 235
Q ss_pred HHHHhhhhcCccccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcC
Q 037859 329 LSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLD 392 (504)
Q Consensus 329 ls~lL~~lDg~~~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~ 392 (504)
.+.||..++.. +..+++|++|+.+++|++++++ |+ ..+.|..++.++....++..+.
T Consensus 136 ~naLLKtLEep----p~~~ifIlatt~~~ki~~tI~S--Rc-~~~~f~~~~~~ei~~~L~~i~~ 192 (559)
T PRK05563 136 FNALLKTLEEP----PAHVIFILATTEPHKIPATILS--RC-QRFDFKRISVEDIVERLKYILD 192 (559)
T ss_pred HHHHHHHhcCC----CCCeEEEEEeCChhhCcHHHHh--Hh-eEEecCCCCHHHHHHHHHHHHH
Confidence 77888888754 3457888888889999999998 88 5789999999888887776553
No 72
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.58 E-value=1.5e-14 Score=147.17 Aligned_cols=147 Identities=20% Similarity=0.213 Sum_probs=110.4
Q ss_pred cCCCccccccccChhHHHHHHHhh-----cccccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccCChHHHHHHH----
Q 037859 202 FEHPATFDTLAMETKKKEEIKKDL-----KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQDNSELRSLL---- 272 (504)
Q Consensus 202 ~~~p~~f~~~~~~~~~k~~i~~~l-----~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~~l~~l~---- 272 (504)
-..|.+|+.++++++.++.+...+ +..+|||||||+|||++++++|++++.+++.+++.. .....++..+
T Consensus 14 kyrP~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~-~~~~~i~~~l~~~~ 92 (316)
T PHA02544 14 KYRPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD-CRIDFVRNRLTRFA 92 (316)
T ss_pred ccCCCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc-ccHHHHHHHHHHHH
Confidence 346899999999999999998887 445777999999999999999999999999998887 3233333322
Q ss_pred Hhc---cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccCCCceEE
Q 037859 273 IDT---SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERII 349 (504)
Q Consensus 273 ~~~---~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~~~~iv 349 (504)
... ..+.||+|||+|.+- . . .....|...++.. .....+
T Consensus 93 ~~~~~~~~~~vliiDe~d~l~----~---------------------------~---~~~~~L~~~le~~----~~~~~~ 134 (316)
T PHA02544 93 STVSLTGGGKVIIIDEFDRLG----L---------------------------A---DAQRHLRSFMEAY----SKNCSF 134 (316)
T ss_pred HhhcccCCCeEEEEECccccc----C---------------------------H---HHHHHHHHHHHhc----CCCceE
Confidence 111 357899999999851 0 0 1122334445543 234678
Q ss_pred EEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHh
Q 037859 350 VFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNY 390 (504)
Q Consensus 350 I~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~ 390 (504)
|+|||.+..++++|.+ |+ ..+.++.|+.+++..+++.+
T Consensus 135 Ilt~n~~~~l~~~l~s--R~-~~i~~~~p~~~~~~~il~~~ 172 (316)
T PHA02544 135 IITANNKNGIIEPLRS--RC-RVIDFGVPTKEEQIEMMKQM 172 (316)
T ss_pred EEEcCChhhchHHHHh--hc-eEEEeCCCCHHHHHHHHHHH
Confidence 8999999999999999 88 47899999999988776654
No 73
>PLN03025 replication factor C subunit; Provisional
Probab=99.58 E-value=1.6e-14 Score=147.31 Aligned_cols=148 Identities=17% Similarity=0.203 Sum_probs=108.0
Q ss_pred CCCccccccccChhHHHHHHHhh----cccccccCCCCCcHHHHHHHHHHhcCC-----cEEEEeccccCChHHHHHHHH
Q 037859 203 EHPATFDTLAMETKKKEEIKKDL----KKGYLLYGPPGTGKSTMIAAMANFLNY-----DVYDLELTTVQDNSELRSLLI 273 (504)
Q Consensus 203 ~~p~~f~~~~~~~~~k~~i~~~l----~rg~LL~GPpGtGKTsla~aiA~~l~~-----~i~~l~~~~~~~~~~l~~l~~ 273 (504)
.+|.+|++++++++..+.+...+ ...+|||||||||||++|+++|+++.. .+..++.+...+...++..+.
T Consensus 7 yrP~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~~~~vr~~i~ 86 (319)
T PLN03025 7 YRPTKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGIDVVRNKIK 86 (319)
T ss_pred cCCCCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccccHHHHHHHHH
Confidence 47999999999999888877666 234899999999999999999999732 345555554434344554432
Q ss_pred h---c------cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccCC
Q 037859 274 D---T------SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASG 344 (504)
Q Consensus 274 ~---~------~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~ 344 (504)
. . ....|++|||+|.+. ....+.|+..|+.. +
T Consensus 87 ~~~~~~~~~~~~~~kviiiDE~d~lt-----------------------------------~~aq~aL~~~lE~~----~ 127 (319)
T PLN03025 87 MFAQKKVTLPPGRHKIVILDEADSMT-----------------------------------SGAQQALRRTMEIY----S 127 (319)
T ss_pred HHHhccccCCCCCeEEEEEechhhcC-----------------------------------HHHHHHHHHHHhcc----c
Confidence 2 1 246799999999862 11345566666543 2
Q ss_pred CceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcC
Q 037859 345 EERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLD 392 (504)
Q Consensus 345 ~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~ 392 (504)
....+|++||....+.++|.. |+ ..+.|+.|+.++....++....
T Consensus 128 ~~t~~il~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~ 172 (319)
T PLN03025 128 NTTRFALACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVE 172 (319)
T ss_pred CCceEEEEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHH
Confidence 234678899999999999999 77 5799999999988887776653
No 74
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=2.1e-14 Score=155.74 Aligned_cols=147 Identities=23% Similarity=0.381 Sum_probs=114.6
Q ss_pred CCccccccccChhHHHHHHHhh-----cccccccCCCCCcHHHHHHHHHHhcCC--------------------------
Q 037859 204 HPATFDTLAMETKKKEEIKKDL-----KKGYLLYGPPGTGKSTMIAAMANFLNY-------------------------- 252 (504)
Q Consensus 204 ~p~~f~~~~~~~~~k~~i~~~l-----~rg~LL~GPpGtGKTsla~aiA~~l~~-------------------------- 252 (504)
+|.+|+++++++..++.|...+ +..||||||+|||||++|+++|+.+++
T Consensus 8 RP~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~ 87 (584)
T PRK14952 8 RPATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSI 87 (584)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCc
Confidence 6899999999999999988888 445999999999999999999998763
Q ss_pred cEEEEeccccCChHHHHHHHHhc------cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchh
Q 037859 253 DVYDLELTTVQDNSELRSLLIDT------SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSK 326 (504)
Q Consensus 253 ~i~~l~~~~~~~~~~l~~l~~~~------~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (504)
+++.++.++..+-+.++.+.... ...-|++|||+|.+ +.
T Consensus 88 dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~L-----------------------------------t~ 132 (584)
T PRK14952 88 DVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMV-----------------------------------TT 132 (584)
T ss_pred eEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcC-----------------------------------CH
Confidence 34455554433445565554332 35679999999986 12
Q ss_pred hHHHHHhhhhcCccccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcC
Q 037859 327 VTLSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLD 392 (504)
Q Consensus 327 ~~ls~lL~~lDg~~~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~ 392 (504)
...+.||..|+.. .+.+++|++|+.+++|.++|+. |+ .+++|..++.++....+..++.
T Consensus 133 ~A~NALLK~LEEp----p~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~ 191 (584)
T PRK14952 133 AGFNALLKIVEEP----PEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICE 191 (584)
T ss_pred HHHHHHHHHHhcC----CCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHH
Confidence 3677889888854 3568888888989999999999 86 6899999999888877777654
No 75
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.57 E-value=4.2e-14 Score=146.09 Aligned_cols=148 Identities=21% Similarity=0.399 Sum_probs=113.1
Q ss_pred CCccccccccChhHHHHHHHhh-----cccccccCCCCCcHHHHHHHHHHhcCC------------------------cE
Q 037859 204 HPATFDTLAMETKKKEEIKKDL-----KKGYLLYGPPGTGKSTMIAAMANFLNY------------------------DV 254 (504)
Q Consensus 204 ~p~~f~~~~~~~~~k~~i~~~l-----~rg~LL~GPpGtGKTsla~aiA~~l~~------------------------~i 254 (504)
.|.+|+.+++++..++.+...+ +..||||||||+|||++|+++|..+.. ++
T Consensus 9 rp~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~ 88 (355)
T TIGR02397 9 RPQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV 88 (355)
T ss_pred CCCcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE
Confidence 5889999999999999998877 456999999999999999999988742 24
Q ss_pred EEEeccccCChHHHHHHHHhcc------CCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhH
Q 037859 255 YDLELTTVQDNSELRSLLIDTS------SKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVT 328 (504)
Q Consensus 255 ~~l~~~~~~~~~~l~~l~~~~~------~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (504)
+.++.........++.++..+. .+.|++|||+|.+- ...
T Consensus 89 ~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~-----------------------------------~~~ 133 (355)
T TIGR02397 89 IEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLS-----------------------------------KSA 133 (355)
T ss_pred EEeeccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcC-----------------------------------HHH
Confidence 4444432233445666665542 45699999999851 124
Q ss_pred HHHHhhhhcCccccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCc
Q 037859 329 LSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDI 393 (504)
Q Consensus 329 ls~lL~~lDg~~~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~ 393 (504)
.+.||..++.. ....++|++||.++.+.+++.+ |+ ..++|+.|+.++...+++.++..
T Consensus 134 ~~~Ll~~le~~----~~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l~~~~~~ 191 (355)
T TIGR02397 134 FNALLKTLEEP----PEHVVFILATTEPHKIPATILS--RC-QRFDFKRIPLEDIVERLKKILDK 191 (355)
T ss_pred HHHHHHHHhCC----ccceeEEEEeCCHHHHHHHHHh--he-eEEEcCCCCHHHHHHHHHHHHHH
Confidence 67788888753 3457788888999999999998 88 57999999999999888876643
No 76
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=2e-14 Score=156.51 Aligned_cols=147 Identities=18% Similarity=0.301 Sum_probs=114.9
Q ss_pred CCccccccccChhHHHHHHHhh-----cccccccCCCCCcHHHHHHHHHHhcCC--------------------------
Q 037859 204 HPATFDTLAMETKKKEEIKKDL-----KKGYLLYGPPGTGKSTMIAAMANFLNY-------------------------- 252 (504)
Q Consensus 204 ~p~~f~~~~~~~~~k~~i~~~l-----~rg~LL~GPpGtGKTsla~aiA~~l~~-------------------------- 252 (504)
+|.+|+++++++..++.|...+ +..||||||+|||||++|+++|+.+++
T Consensus 11 RP~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g 90 (618)
T PRK14951 11 RPRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSG 90 (618)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcC
Confidence 6899999999999999888887 556899999999999999999999875
Q ss_pred ---cEEEEeccccCChHHHHHHHHhcc------CCeEEEEecccccccccccccccccccccccccCcccccccccCCCc
Q 037859 253 ---DVYDLELTTVQDNSELRSLLIDTS------SKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSK 323 (504)
Q Consensus 253 ---~i~~l~~~~~~~~~~l~~l~~~~~------~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (504)
+++.++..+-.+.+.++.++.... ..-|++|||+|.+
T Consensus 91 ~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~L---------------------------------- 136 (618)
T PRK14951 91 RFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHML---------------------------------- 136 (618)
T ss_pred CCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhC----------------------------------
Confidence 244454443334456777776532 3469999999986
Q ss_pred chhhHHHHHhhhhcCccccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcC
Q 037859 324 KSKVTLSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLD 392 (504)
Q Consensus 324 ~~~~~ls~lL~~lDg~~~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~ 392 (504)
+....+.||..|+.. .+..++|++|+.+.++.+.++. |+ .+++|..++.++....++..+.
T Consensus 137 -s~~a~NaLLKtLEEP----P~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~ 197 (618)
T PRK14951 137 -TNTAFNAMLKTLEEP----PEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLA 197 (618)
T ss_pred -CHHHHHHHHHhcccC----CCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHH
Confidence 223577888888753 3457788888889999999998 88 7899999999888877776653
No 77
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.57 E-value=1.5e-14 Score=155.74 Aligned_cols=146 Identities=17% Similarity=0.332 Sum_probs=113.2
Q ss_pred CCccccccccChhHHHHHHHhh-----cccccccCCCCCcHHHHHHHHHHhcCC------------------------cE
Q 037859 204 HPATFDTLAMETKKKEEIKKDL-----KKGYLLYGPPGTGKSTMIAAMANFLNY------------------------DV 254 (504)
Q Consensus 204 ~p~~f~~~~~~~~~k~~i~~~l-----~rg~LL~GPpGtGKTsla~aiA~~l~~------------------------~i 254 (504)
+|.+|+++++++..++.+...+ +++|||+||||||||++|+++|+.+.+ ++
T Consensus 11 RP~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~Di 90 (605)
T PRK05896 11 RPHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDI 90 (605)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCce
Confidence 6899999999999999888877 566999999999999999999998853 44
Q ss_pred EEEeccccCChHHHHHHHHhc------cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhH
Q 037859 255 YDLELTTVQDNSELRSLLIDT------SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVT 328 (504)
Q Consensus 255 ~~l~~~~~~~~~~l~~l~~~~------~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (504)
+.++..+..+...++.+.... ....|++|||+|.+- ...
T Consensus 91 ieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt-----------------------------------~~A 135 (605)
T PRK05896 91 VELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLS-----------------------------------TSA 135 (605)
T ss_pred EEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCC-----------------------------------HHH
Confidence 555544333445566665433 245699999999851 124
Q ss_pred HHHHhhhhcCccccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhc
Q 037859 329 LSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYL 391 (504)
Q Consensus 329 ls~lL~~lDg~~~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l 391 (504)
.+.||..|+.. ++..++|++|+.+..|.+++++ |+ ..++|..++.++....++..+
T Consensus 136 ~NaLLKtLEEP----p~~tvfIL~Tt~~~KLl~TI~S--Rc-q~ieF~~Ls~~eL~~~L~~il 191 (605)
T PRK05896 136 WNALLKTLEEP----PKHVVFIFATTEFQKIPLTIIS--RC-QRYNFKKLNNSELQELLKSIA 191 (605)
T ss_pred HHHHHHHHHhC----CCcEEEEEECCChHhhhHHHHh--hh-hhcccCCCCHHHHHHHHHHHH
Confidence 56788888753 3457888888889999999999 87 479999999988887777654
No 78
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=2.7e-14 Score=153.14 Aligned_cols=147 Identities=23% Similarity=0.406 Sum_probs=113.1
Q ss_pred CCccccccccChhHHHHHHHhh-----cccccccCCCCCcHHHHHHHHHHhcCC-----------------------cEE
Q 037859 204 HPATFDTLAMETKKKEEIKKDL-----KKGYLLYGPPGTGKSTMIAAMANFLNY-----------------------DVY 255 (504)
Q Consensus 204 ~p~~f~~~~~~~~~k~~i~~~l-----~rg~LL~GPpGtGKTsla~aiA~~l~~-----------------------~i~ 255 (504)
.|.+|+++++++..++.+...+ +..||||||||||||++|+++|+.+.+ +++
T Consensus 9 RP~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~ 88 (504)
T PRK14963 9 RPITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVL 88 (504)
T ss_pred CCCCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceE
Confidence 6899999999999999888887 445799999999999999999998853 255
Q ss_pred EEeccccCChHHHHHHHHhc------cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHH
Q 037859 256 DLELTTVQDNSELRSLLIDT------SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTL 329 (504)
Q Consensus 256 ~l~~~~~~~~~~l~~l~~~~------~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 329 (504)
.++.....+...++.+.... ..+.||||||+|.+ +...+
T Consensus 89 el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~l-----------------------------------s~~a~ 133 (504)
T PRK14963 89 EIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMM-----------------------------------SKSAF 133 (504)
T ss_pred EecccccCCHHHHHHHHHHHhhccccCCCeEEEEECcccc-----------------------------------CHHHH
Confidence 55554333444555553322 35679999999974 12357
Q ss_pred HHHhhhhcCccccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcC
Q 037859 330 SGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLD 392 (504)
Q Consensus 330 s~lL~~lDg~~~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~ 392 (504)
+.||..|+.. ....++|++||.++.+.+++.+ |+ .++.|..++.++....++..+.
T Consensus 134 naLLk~LEep----~~~t~~Il~t~~~~kl~~~I~S--Rc-~~~~f~~ls~~el~~~L~~i~~ 189 (504)
T PRK14963 134 NALLKTLEEP----PEHVIFILATTEPEKMPPTILS--RT-QHFRFRRLTEEEIAGKLRRLLE 189 (504)
T ss_pred HHHHHHHHhC----CCCEEEEEEcCChhhCChHHhc--ce-EEEEecCCCHHHHHHHHHHHHH
Confidence 7888888753 3457888889999999999999 87 5899999999998888776653
No 79
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=2.4e-14 Score=153.97 Aligned_cols=146 Identities=20% Similarity=0.320 Sum_probs=111.8
Q ss_pred CCccccccccChhHHHHHHHhh-----cccccccCCCCCcHHHHHHHHHHhcCC------------------------cE
Q 037859 204 HPATFDTLAMETKKKEEIKKDL-----KKGYLLYGPPGTGKSTMIAAMANFLNY------------------------DV 254 (504)
Q Consensus 204 ~p~~f~~~~~~~~~k~~i~~~l-----~rg~LL~GPpGtGKTsla~aiA~~l~~------------------------~i 254 (504)
+|.+|+++++++..++.+...+ +..|||+||||||||++|+++|+.+++ ++
T Consensus 11 RP~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl 90 (546)
T PRK14957 11 RPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL 90 (546)
T ss_pred CcCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence 6899999999999998888887 345999999999999999999998864 45
Q ss_pred EEEeccccCChHHHHHHHHhc------cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhH
Q 037859 255 YDLELTTVQDNSELRSLLIDT------SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVT 328 (504)
Q Consensus 255 ~~l~~~~~~~~~~l~~l~~~~------~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (504)
+.++...-.+..+++.++... ...-|++|||+|.+ +...
T Consensus 91 ieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~l-----------------------------------s~~a 135 (546)
T PRK14957 91 IEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHML-----------------------------------SKQS 135 (546)
T ss_pred EEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhc-----------------------------------cHHH
Confidence 555543333344555555432 25679999999985 2236
Q ss_pred HHHHhhhhcCccccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhc
Q 037859 329 LSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYL 391 (504)
Q Consensus 329 ls~lL~~lDg~~~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l 391 (504)
.+.||..|+.. ++.+++|++|+.+..+.++++. |+ ..++|..++.++....++..+
T Consensus 136 ~naLLK~LEep----p~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il 191 (546)
T PRK14957 136 FNALLKTLEEP----PEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIIL 191 (546)
T ss_pred HHHHHHHHhcC----CCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHH
Confidence 67888888853 3456778777778889989888 88 789999999988877776644
No 80
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=1.3e-14 Score=156.68 Aligned_cols=146 Identities=18% Similarity=0.321 Sum_probs=114.5
Q ss_pred CCccccccccChhHHHHHHHhh-----cccccccCCCCCcHHHHHHHHHHhcCC------------------------cE
Q 037859 204 HPATFDTLAMETKKKEEIKKDL-----KKGYLLYGPPGTGKSTMIAAMANFLNY------------------------DV 254 (504)
Q Consensus 204 ~p~~f~~~~~~~~~k~~i~~~l-----~rg~LL~GPpGtGKTsla~aiA~~l~~------------------------~i 254 (504)
+|.+|+++++++..++.+...+ +..|||+||||||||++|+++|+.+++ ++
T Consensus 11 rP~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~ 90 (527)
T PRK14969 11 RPKSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDL 90 (527)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 5899999999999999888877 567999999999999999999999865 34
Q ss_pred EEEeccccCChHHHHHHHHhc------cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhH
Q 037859 255 YDLELTTVQDNSELRSLLIDT------SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVT 328 (504)
Q Consensus 255 ~~l~~~~~~~~~~l~~l~~~~------~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (504)
+.++...-...+.++.++... ....|++|||+|.+ +...
T Consensus 91 ~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~l-----------------------------------s~~a 135 (527)
T PRK14969 91 IEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHML-----------------------------------SKSA 135 (527)
T ss_pred eEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccC-----------------------------------CHHH
Confidence 455544333445677766544 24579999999986 1235
Q ss_pred HHHHhhhhcCccccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhc
Q 037859 329 LSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYL 391 (504)
Q Consensus 329 ls~lL~~lDg~~~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l 391 (504)
.+.||..|+.. .+..++|++|+.++++.+.++. |+ ..++|..++.++....+...+
T Consensus 136 ~naLLK~LEep----p~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il 191 (527)
T PRK14969 136 FNAMLKTLEEP----PEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHIL 191 (527)
T ss_pred HHHHHHHHhCC----CCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHH
Confidence 67889988764 3457888888888899988888 87 789999999998887776665
No 81
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.57 E-value=2.3e-14 Score=157.16 Aligned_cols=147 Identities=22% Similarity=0.382 Sum_probs=113.1
Q ss_pred CCCccccccccChhHHHHHHHhh-----cccccccCCCCCcHHHHHHHHHHhcCCc---------------------EEE
Q 037859 203 EHPATFDTLAMETKKKEEIKKDL-----KKGYLLYGPPGTGKSTMIAAMANFLNYD---------------------VYD 256 (504)
Q Consensus 203 ~~p~~f~~~~~~~~~k~~i~~~l-----~rg~LL~GPpGtGKTsla~aiA~~l~~~---------------------i~~ 256 (504)
.+|.+|+++++++..++.+...+ +.+||||||||||||++|+++|..+.+. ++.
T Consensus 12 yRP~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvie 91 (725)
T PRK07133 12 YRPKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIE 91 (725)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEE
Confidence 36899999999999998888887 5669999999999999999999988652 233
Q ss_pred EeccccCChHHHHHHHHhc------cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHH
Q 037859 257 LELTTVQDNSELRSLLIDT------SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLS 330 (504)
Q Consensus 257 l~~~~~~~~~~l~~l~~~~------~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls 330 (504)
++..+-.+...++.+.... ....|++|||+|.+- ...++
T Consensus 92 idaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT-----------------------------------~~A~N 136 (725)
T PRK07133 92 MDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLS-----------------------------------KSAFN 136 (725)
T ss_pred EeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCC-----------------------------------HHHHH
Confidence 3332212344566665543 256799999999861 23577
Q ss_pred HHhhhhcCccccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhc
Q 037859 331 GLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYL 391 (504)
Q Consensus 331 ~lL~~lDg~~~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l 391 (504)
.||..|+.. ++.+++|++|+.++.|.+++++ |+ .++.|..++.++....+...+
T Consensus 137 ALLKtLEEP----P~~tifILaTte~~KLl~TI~S--Rc-q~ieF~~L~~eeI~~~L~~il 190 (725)
T PRK07133 137 ALLKTLEEP----PKHVIFILATTEVHKIPLTILS--RV-QRFNFRRISEDEIVSRLEFIL 190 (725)
T ss_pred HHHHHhhcC----CCceEEEEEcCChhhhhHHHHh--hc-eeEEccCCCHHHHHHHHHHHH
Confidence 889888854 3457888888899999999999 88 589999999998887777654
No 82
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.56 E-value=4.2e-14 Score=135.74 Aligned_cols=161 Identities=22% Similarity=0.321 Sum_probs=129.7
Q ss_pred ceeeecCCCccccccccChhHHHHHHHhh--------cccccccCCCCCcHHHHHHHHHHhc---CCcEEEEeccccCCh
Q 037859 197 WSHVFFEHPATFDTLAMETKKKEEIKKDL--------KKGYLLYGPPGTGKSTMIAAMANFL---NYDVYDLELTTVQDN 265 (504)
Q Consensus 197 w~~~~~~~p~~f~~~~~~~~~k~~i~~~l--------~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~~~~ 265 (504)
...++-.+|..++.+.+-+.+|+.|++-. ...+||||+.||||||+++|+.+++ |+.++.+.-..+.+-
T Consensus 15 l~~i~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~~l 94 (249)
T PF05673_consen 15 LEPIKHPDPIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLGDL 94 (249)
T ss_pred EEecCCCCCCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhccH
Confidence 33344445567999999999999998776 5679999999999999999999876 677888888888888
Q ss_pred HHHHHHHHhccCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccCCC
Q 037859 266 SELRSLLIDTSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGE 345 (504)
Q Consensus 266 ~~l~~l~~~~~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~~ 345 (504)
..|...+...+.+-|||+||+- |+ ........|-..|||--...++
T Consensus 95 ~~l~~~l~~~~~kFIlf~DDLs--Fe--------------------------------~~d~~yk~LKs~LeGgle~~P~ 140 (249)
T PF05673_consen 95 PELLDLLRDRPYKFILFCDDLS--FE--------------------------------EGDTEYKALKSVLEGGLEARPD 140 (249)
T ss_pred HHHHHHHhcCCCCEEEEecCCC--CC--------------------------------CCcHHHHHHHHHhcCccccCCC
Confidence 8888888888899999999864 21 1122457778888987777788
Q ss_pred ceEEEEecCCCCCCCh-----------------------hhhcCCCceeEEEecCCCHHHHHHHHHHhcCc
Q 037859 346 ERIIVFTTNYVDKLDP-----------------------ALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDI 393 (504)
Q Consensus 346 ~~ivI~tTN~~e~Ld~-----------------------ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~ 393 (504)
+++|.+|+|+...+++ +|-. ||..+|.|..|+.++..+|.++|+..
T Consensus 141 NvliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsD--RFGL~l~F~~~~q~~YL~IV~~~~~~ 209 (249)
T PF05673_consen 141 NVLIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSD--RFGLWLSFYPPDQEEYLAIVRHYAER 209 (249)
T ss_pred cEEEEEecchhhccchhhhhccCCCccccCcchHHHHHHhHHH--hCCcEEEecCCCHHHHHHHHHHHHHH
Confidence 8999999997654433 3445 99999999999999999999999853
No 83
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.56 E-value=3.4e-14 Score=149.92 Aligned_cols=145 Identities=24% Similarity=0.365 Sum_probs=109.2
Q ss_pred CCCccccccccChhHHHH---HHHhh----cccccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccCChHHHHHHHHhc
Q 037859 203 EHPATFDTLAMETKKKEE---IKKDL----KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQDNSELRSLLIDT 275 (504)
Q Consensus 203 ~~p~~f~~~~~~~~~k~~---i~~~l----~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~~l~~l~~~~ 275 (504)
-+|++|++++++++.... +...+ ...+||+||||||||++|+++|+.++.+++.++.... +...++.++...
T Consensus 6 ~RP~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~-~~~~ir~ii~~~ 84 (413)
T PRK13342 6 MRPKTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS-GVKDLREVIEEA 84 (413)
T ss_pred hCCCCHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc-cHHHHHHHHHHH
Confidence 468999999999877433 55555 4568999999999999999999999999998887643 344566665544
Q ss_pred ------cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccCCCceEE
Q 037859 276 ------SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERII 349 (504)
Q Consensus 276 ------~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~~~~iv 349 (504)
..+.||||||||.+. ......||..++. +.+++
T Consensus 85 ~~~~~~g~~~vL~IDEi~~l~-----------------------------------~~~q~~LL~~le~------~~iil 123 (413)
T PRK13342 85 RQRRSAGRRTILFIDEIHRFN-----------------------------------KAQQDALLPHVED------GTITL 123 (413)
T ss_pred HHhhhcCCceEEEEechhhhC-----------------------------------HHHHHHHHHHhhc------CcEEE
Confidence 267899999999862 1233456666653 23566
Q ss_pred EEec--CCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcC
Q 037859 350 VFTT--NYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLD 392 (504)
Q Consensus 350 I~tT--N~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~ 392 (504)
|++| |....++++|++ |+ ..+.|+.++.++...+++..+.
T Consensus 124 I~att~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~ 165 (413)
T PRK13342 124 IGATTENPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALE 165 (413)
T ss_pred EEeCCCChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHH
Confidence 6654 445689999999 88 6899999999999999888753
No 84
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=4.2e-14 Score=153.07 Aligned_cols=148 Identities=18% Similarity=0.295 Sum_probs=112.4
Q ss_pred CCCccccccccChhHHHHHHHhh-----cccccccCCCCCcHHHHHHHHHHhcCCc------------------------
Q 037859 203 EHPATFDTLAMETKKKEEIKKDL-----KKGYLLYGPPGTGKSTMIAAMANFLNYD------------------------ 253 (504)
Q Consensus 203 ~~p~~f~~~~~~~~~k~~i~~~l-----~rg~LL~GPpGtGKTsla~aiA~~l~~~------------------------ 253 (504)
.+|.+|+++++++..++.|...+ +..|||+||||||||++|+++|+.+++.
T Consensus 10 yRP~sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpD 89 (624)
T PRK14959 10 YRPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVD 89 (624)
T ss_pred hCCCCHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCc
Confidence 36899999999999988888877 4569999999999999999999999753
Q ss_pred EEEEeccccCChHHHHHHHHh---c---cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhh
Q 037859 254 VYDLELTTVQDNSELRSLLID---T---SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKV 327 (504)
Q Consensus 254 i~~l~~~~~~~~~~l~~l~~~---~---~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (504)
++.++...-..-+.++.+... . ....||||||+|.+ ...
T Consensus 90 v~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~L-----------------------------------t~~ 134 (624)
T PRK14959 90 VVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHML-----------------------------------TRE 134 (624)
T ss_pred eEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhC-----------------------------------CHH
Confidence 555554322233444443322 2 25679999999986 123
Q ss_pred HHHHHhhhhcCccccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcC
Q 037859 328 TLSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLD 392 (504)
Q Consensus 328 ~ls~lL~~lDg~~~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~ 392 (504)
..+.||..|+.. ....++|++||.+.++.+.|++ |+ .+|+|..++.++...+++..+.
T Consensus 135 a~naLLk~LEEP----~~~~ifILaTt~~~kll~TI~S--Rc-q~i~F~pLs~~eL~~~L~~il~ 192 (624)
T PRK14959 135 AFNALLKTLEEP----PARVTFVLATTEPHKFPVTIVS--RC-QHFTFTRLSEAGLEAHLTKVLG 192 (624)
T ss_pred HHHHHHHHhhcc----CCCEEEEEecCChhhhhHHHHh--hh-hccccCCCCHHHHHHHHHHHHH
Confidence 467888888753 2457889999999999999998 88 5889999999988887776543
No 85
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=7.7e-14 Score=145.06 Aligned_cols=147 Identities=17% Similarity=0.352 Sum_probs=110.8
Q ss_pred CCccccccccChhHHHHHHHhh-----cccccccCCCCCcHHHHHHHHHHhcCC------------cEEEEeccccCChH
Q 037859 204 HPATFDTLAMETKKKEEIKKDL-----KKGYLLYGPPGTGKSTMIAAMANFLNY------------DVYDLELTTVQDNS 266 (504)
Q Consensus 204 ~p~~f~~~~~~~~~k~~i~~~l-----~rg~LL~GPpGtGKTsla~aiA~~l~~------------~i~~l~~~~~~~~~ 266 (504)
+|.+|+++++++..++.+...+ +.+||||||||+|||++++++|+.++. .++.++.....+..
T Consensus 12 rP~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 91 (367)
T PRK14970 12 RPQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVD 91 (367)
T ss_pred CCCcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHH
Confidence 6889999999999999888887 557999999999999999999998753 23334333323346
Q ss_pred HHHHHHHhc------cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCcc
Q 037859 267 ELRSLLIDT------SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLW 340 (504)
Q Consensus 267 ~l~~l~~~~------~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~ 340 (504)
.++.++..+ ..+.||+|||+|.+. ...++.|+..++..
T Consensus 92 ~i~~l~~~~~~~p~~~~~kiviIDE~~~l~-----------------------------------~~~~~~ll~~le~~- 135 (367)
T PRK14970 92 DIRNLIDQVRIPPQTGKYKIYIIDEVHMLS-----------------------------------SAAFNAFLKTLEEP- 135 (367)
T ss_pred HHHHHHHHHhhccccCCcEEEEEeChhhcC-----------------------------------HHHHHHHHHHHhCC-
Confidence 677776643 245799999999751 12467788877653
Q ss_pred ccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcC
Q 037859 341 SASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLD 392 (504)
Q Consensus 341 ~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~ 392 (504)
+...++|++||.+..+.+++.+ |+ ..++++.|+.++...++.....
T Consensus 136 ---~~~~~~Il~~~~~~kl~~~l~s--r~-~~v~~~~~~~~~l~~~l~~~~~ 181 (367)
T PRK14970 136 ---PAHAIFILATTEKHKIIPTILS--RC-QIFDFKRITIKDIKEHLAGIAV 181 (367)
T ss_pred ---CCceEEEEEeCCcccCCHHHHh--cc-eeEecCCccHHHHHHHHHHHHH
Confidence 2346778888888999999998 76 4689999999888877776543
No 86
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=2.9e-14 Score=155.77 Aligned_cols=146 Identities=17% Similarity=0.324 Sum_probs=113.6
Q ss_pred CCccccccccChhHHHHHHHhh-----cccccccCCCCCcHHHHHHHHHHhcCCc------------------------E
Q 037859 204 HPATFDTLAMETKKKEEIKKDL-----KKGYLLYGPPGTGKSTMIAAMANFLNYD------------------------V 254 (504)
Q Consensus 204 ~p~~f~~~~~~~~~k~~i~~~l-----~rg~LL~GPpGtGKTsla~aiA~~l~~~------------------------i 254 (504)
+|.+|+++++++..++.+...+ +..||||||||||||++|+++|+.+++. +
T Consensus 11 RP~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~ 90 (576)
T PRK14965 11 RPQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDV 90 (576)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCe
Confidence 5899999999999999998887 5679999999999999999999998642 4
Q ss_pred EEEeccccCChHHHHHHHHhc------cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhH
Q 037859 255 YDLELTTVQDNSELRSLLIDT------SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVT 328 (504)
Q Consensus 255 ~~l~~~~~~~~~~l~~l~~~~------~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (504)
+.++..+-...++++.+.... ...-|++|||+|.+ +...
T Consensus 91 ~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~L-----------------------------------t~~a 135 (576)
T PRK14965 91 FEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHML-----------------------------------STNA 135 (576)
T ss_pred eeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhC-----------------------------------CHHH
Confidence 445544333445666665443 24569999999986 1235
Q ss_pred HHHHhhhhcCccccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhc
Q 037859 329 LSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYL 391 (504)
Q Consensus 329 ls~lL~~lDg~~~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l 391 (504)
.+.||..|+.. .+.+++|++||.+++|.+.++. |+ .+++|..++.++....+...+
T Consensus 136 ~naLLk~LEep----p~~~~fIl~t~~~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~L~~i~ 191 (576)
T PRK14965 136 FNALLKTLEEP----PPHVKFIFATTEPHKVPITILS--RC-QRFDFRRIPLQKIVDRLRYIA 191 (576)
T ss_pred HHHHHHHHHcC----CCCeEEEEEeCChhhhhHHHHH--hh-hhhhcCCCCHHHHHHHHHHHH
Confidence 67899988853 3457888999999999999998 87 589999998888777666554
No 87
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.54 E-value=8.6e-14 Score=137.97 Aligned_cols=137 Identities=23% Similarity=0.236 Sum_probs=97.0
Q ss_pred HHHHHhh--cccccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccCChHHHH---------------------------
Q 037859 219 EEIKKDL--KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQDNSELR--------------------------- 269 (504)
Q Consensus 219 ~~i~~~l--~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~~l~--------------------------- 269 (504)
++++..+ .+.+||+||||||||++|+++|..+|.+++.+++..-....++.
T Consensus 12 ~~~l~~l~~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (262)
T TIGR02640 12 SRALRYLKSGYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVR 91 (262)
T ss_pred HHHHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccc
Confidence 3444444 56799999999999999999999999999999887533222221
Q ss_pred ------HHHHhccCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCcc-cc
Q 037859 270 ------SLLIDTSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLW-SA 342 (504)
Q Consensus 270 ------~l~~~~~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~-~~ 342 (504)
.++.....+.+|+|||||.+ +..+.+.|+..|+.-. ..
T Consensus 92 ~~~~~g~l~~A~~~g~~lllDEi~r~-----------------------------------~~~~q~~Ll~~Le~~~~~i 136 (262)
T TIGR02640 92 QNWVDNRLTLAVREGFTLVYDEFTRS-----------------------------------KPETNNVLLSVFEEGVLEL 136 (262)
T ss_pred eeecCchHHHHHHcCCEEEEcchhhC-----------------------------------CHHHHHHHHHHhcCCeEEc
Confidence 11122235679999999984 1235566666665311 00
Q ss_pred -----------CCCceEEEEecCCCC-----CCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCc
Q 037859 343 -----------SGEERIIVFTTNYVD-----KLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDI 393 (504)
Q Consensus 343 -----------~~~~~ivI~tTN~~e-----~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~ 393 (504)
...+..||+|+|... .+++||++ || ..+.+++|+.++..+|++...+.
T Consensus 137 ~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~~~ 200 (262)
T TIGR02640 137 PGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQDALLD--RL-ITIFMDYPDIDTETAILRAKTDV 200 (262)
T ss_pred cCCCCCCceEecCCCCEEEEeeCCccccceecccHHHHh--hc-EEEECCCCCHHHHHHHHHHhhCC
Confidence 112456899999763 56999999 99 78999999999999999887643
No 88
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.53 E-value=2.8e-14 Score=162.73 Aligned_cols=152 Identities=17% Similarity=0.269 Sum_probs=112.5
Q ss_pred CCccccccccChhHHHHHHHhh----cccccccCCCCCcHHHHHHHHHHhc----------CCcEEEEeccccCC-----
Q 037859 204 HPATFDTLAMETKKKEEIKKDL----KKGYLLYGPPGTGKSTMIAAMANFL----------NYDVYDLELTTVQD----- 264 (504)
Q Consensus 204 ~p~~f~~~~~~~~~k~~i~~~l----~rg~LL~GPpGtGKTsla~aiA~~l----------~~~i~~l~~~~~~~----- 264 (504)
.|..++.+++.++..++++..+ ++..+|+||||||||++++++|..+ +++++.++++.+..
T Consensus 168 ~~~~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~ 247 (852)
T TIGR03346 168 REGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYR 247 (852)
T ss_pred hCCCCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhh
Confidence 5667899999998888888877 5668999999999999999999986 67899988776521
Q ss_pred ---hHHHHHHHHhc---cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcC
Q 037859 265 ---NSELRSLLIDT---SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDG 338 (504)
Q Consensus 265 ---~~~l~~l~~~~---~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg 338 (504)
...++.+|... ..++||||||||.++. .+. .... .....+|..+
T Consensus 248 g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~---~g~------------------------~~~~-~d~~~~Lk~~-- 297 (852)
T TIGR03346 248 GEFEERLKAVLNEVTKSEGQIILFIDELHTLVG---AGK------------------------AEGA-MDAGNMLKPA-- 297 (852)
T ss_pred hhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhc---CCC------------------------Ccch-hHHHHHhchh--
Confidence 13567777654 3589999999999752 110 0001 1122333322
Q ss_pred ccccCCCceEEEEecCCCC-----CCChhhhcCCCceeEEEecCCCHHHHHHHHHHhc
Q 037859 339 LWSASGEERIIVFTTNYVD-----KLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYL 391 (504)
Q Consensus 339 ~~~~~~~~~ivI~tTN~~e-----~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l 391 (504)
...+.+.+|++||..+ .+|+||.| ||. .|.++.|+.+++..|++.+.
T Consensus 298 ---l~~g~i~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 298 ---LARGELHCIGATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred ---hhcCceEEEEeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHH
Confidence 1245688999998765 37999999 996 68999999999999998764
No 89
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=1.1e-13 Score=148.06 Aligned_cols=149 Identities=21% Similarity=0.339 Sum_probs=111.5
Q ss_pred CCCccccccccChhHHHHHHHhh-----cccccccCCCCCcHHHHHHHHHHhcCC------------------------c
Q 037859 203 EHPATFDTLAMETKKKEEIKKDL-----KKGYLLYGPPGTGKSTMIAAMANFLNY------------------------D 253 (504)
Q Consensus 203 ~~p~~f~~~~~~~~~k~~i~~~l-----~rg~LL~GPpGtGKTsla~aiA~~l~~------------------------~ 253 (504)
.+|..|+.+++++...+.+...+ +..||||||||||||++|+.+|..+++ +
T Consensus 10 yRP~~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d 89 (486)
T PRK14953 10 YRPKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPD 89 (486)
T ss_pred hCCCcHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCc
Confidence 36889999999999999888888 455999999999999999999998863 2
Q ss_pred EEEEeccccCChHHHHHHHHhc------cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhh
Q 037859 254 VYDLELTTVQDNSELRSLLIDT------SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKV 327 (504)
Q Consensus 254 i~~l~~~~~~~~~~l~~l~~~~------~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (504)
++.++.++-.+...++.+.... ..+.|++|||+|.+- ..
T Consensus 90 ~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt-----------------------------------~~ 134 (486)
T PRK14953 90 LIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLT-----------------------------------KE 134 (486)
T ss_pred EEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcC-----------------------------------HH
Confidence 4444443323334455544332 256799999999851 22
Q ss_pred HHHHHhhhhcCccccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCc
Q 037859 328 TLSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDI 393 (504)
Q Consensus 328 ~ls~lL~~lDg~~~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~ 393 (504)
..+.||..++.. ....++|++|+.++.+++++.+ |+ ..+.|..++.++....++..+..
T Consensus 135 a~naLLk~LEep----p~~~v~Il~tt~~~kl~~tI~S--Rc-~~i~f~~ls~~el~~~L~~i~k~ 193 (486)
T PRK14953 135 AFNALLKTLEEP----PPRTIFILCTTEYDKIPPTILS--RC-QRFIFSKPTKEQIKEYLKRICNE 193 (486)
T ss_pred HHHHHHHHHhcC----CCCeEEEEEECCHHHHHHHHHH--hc-eEEEcCCCCHHHHHHHHHHHHHH
Confidence 456788887753 3446777778888899999998 87 47999999999998888876543
No 90
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.52 E-value=2.8e-14 Score=139.21 Aligned_cols=149 Identities=23% Similarity=0.367 Sum_probs=105.9
Q ss_pred ecCCCccccccccChhHHHHHHHhhcc----cccccCCCCCcHHHHHHHHHHhcCCc------EEEEeccccCC------
Q 037859 201 FFEHPATFDTLAMETKKKEEIKKDLKK----GYLLYGPPGTGKSTMIAAMANFLNYD------VYDLELTTVQD------ 264 (504)
Q Consensus 201 ~~~~p~~f~~~~~~~~~k~~i~~~l~r----g~LL~GPpGtGKTsla~aiA~~l~~~------i~~l~~~~~~~------ 264 (504)
--.+|.+|+++.+++.+.+.+...+.+ .|||||||||||||.|.|+|.+++.+ +..++.+.-.+
T Consensus 28 eKYrPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~ 107 (346)
T KOG0989|consen 28 EKYRPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVRE 107 (346)
T ss_pred HHhCCCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhh
Confidence 345799999999999999988888833 38999999999999999999999762 33333333211
Q ss_pred ----hHHHHHHHH-hc----cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhh
Q 037859 265 ----NSELRSLLI-DT----SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNF 335 (504)
Q Consensus 265 ----~~~l~~l~~-~~----~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ 335 (504)
-+.+..... .. +..-|++|||.|.+ .....+.|.+.
T Consensus 108 Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsm-----------------------------------tsdaq~aLrr~ 152 (346)
T KOG0989|consen 108 KIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSM-----------------------------------TSDAQAALRRT 152 (346)
T ss_pred hhcCHHHHhhccccccCCCCCcceEEEEechhhh-----------------------------------hHHHHHHHHHH
Confidence 112221111 01 12269999999986 23467888888
Q ss_pred hcCccccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhc
Q 037859 336 IDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYL 391 (504)
Q Consensus 336 lDg~~~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l 391 (504)
||.. .....+|+.||+.++|++.+.. |+ .++.|+....+.....++...
T Consensus 153 mE~~----s~~trFiLIcnylsrii~pi~S--RC-~KfrFk~L~d~~iv~rL~~Ia 201 (346)
T KOG0989|consen 153 MEDF----SRTTRFILICNYLSRIIRPLVS--RC-QKFRFKKLKDEDIVDRLEKIA 201 (346)
T ss_pred Hhcc----ccceEEEEEcCChhhCChHHHh--hH-HHhcCCCcchHHHHHHHHHHH
Confidence 8874 2447899999999999999999 98 578887766655444444443
No 91
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.52 E-value=8.8e-14 Score=156.25 Aligned_cols=150 Identities=23% Similarity=0.269 Sum_probs=111.8
Q ss_pred ccc-cccChhHHHHHHHhh----------cccccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccCChHHH--------
Q 037859 208 FDT-LAMETKKKEEIKKDL----------KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQDNSEL-------- 268 (504)
Q Consensus 208 f~~-~~~~~~~k~~i~~~l----------~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~~l-------- 268 (504)
++. +.+.+..|++|++.+ ...++|+||||||||++++++|+.++.+++.++++.+.+...+
T Consensus 320 l~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~ 399 (784)
T PRK10787 320 LDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYI 399 (784)
T ss_pred hhhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchhccC
Confidence 444 667888999999877 2238899999999999999999999999999998876554433
Q ss_pred -------HHHHHhcc-CCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCcc
Q 037859 269 -------RSLLIDTS-SKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLW 340 (504)
Q Consensus 269 -------~~l~~~~~-~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~ 340 (504)
.+.+.... .+.||+|||||.+.. . ......+.||..+|.-.
T Consensus 400 g~~~G~~~~~l~~~~~~~~villDEidk~~~----~---------------------------~~g~~~~aLlevld~~~ 448 (784)
T PRK10787 400 GSMPGKLIQKMAKVGVKNPLFLLDEIDKMSS----D---------------------------MRGDPASALLEVLDPEQ 448 (784)
T ss_pred CCCCcHHHHHHHhcCCCCCEEEEEChhhccc----c---------------------------cCCCHHHHHHHHhcccc
Confidence 22233332 456899999998621 0 01124567777776310
Q ss_pred -----c------cCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcC
Q 037859 341 -----S------ASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLD 392 (504)
Q Consensus 341 -----~------~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~ 392 (504)
. ..-+++++|+|+|... |+|||+. ||+ .|.+..++.++..+|+++|+.
T Consensus 449 ~~~~~d~~~~~~~dls~v~~i~TaN~~~-i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 449 NVAFSDHYLEVDYDLSDVMFVATSNSMN-IPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred EEEEecccccccccCCceEEEEcCCCCC-CCHHHhc--cee-eeecCCCCHHHHHHHHHHhhh
Confidence 0 0125589999999884 9999999 995 789999999999999999983
No 92
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.52 E-value=2.1e-14 Score=160.11 Aligned_cols=150 Identities=23% Similarity=0.342 Sum_probs=107.2
Q ss_pred cccccccChhHHHHHHHhh----cccccccCCCCCcHHHHHHHHHHhc----------CCcEEEEeccccC--------C
Q 037859 207 TFDTLAMETKKKEEIKKDL----KKGYLLYGPPGTGKSTMIAAMANFL----------NYDVYDLELTTVQ--------D 264 (504)
Q Consensus 207 ~f~~~~~~~~~k~~i~~~l----~rg~LL~GPpGtGKTsla~aiA~~l----------~~~i~~l~~~~~~--------~ 264 (504)
.++.+++.+...++++..+ +..+||+||||||||++|+++|..+ +..+|.+++..+. .
T Consensus 184 ~~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~ 263 (758)
T PRK11034 184 GIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDF 263 (758)
T ss_pred CCCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhhH
Confidence 3667788888888888776 5579999999999999999999864 5677777665442 1
Q ss_pred hHHHHHHHHhc--cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCcccc
Q 037859 265 NSELRSLLIDT--SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSA 342 (504)
Q Consensus 265 ~~~l~~l~~~~--~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~ 342 (504)
...++.++... ..++||||||||.++...+. ......+..+|..+ .
T Consensus 264 e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~---------------------------~~g~~d~~nlLkp~-----L 311 (758)
T PRK11034 264 EKRFKALLKQLEQDTNSILFIDEIHTIIGAGAA---------------------------SGGQVDAANLIKPL-----L 311 (758)
T ss_pred HHHHHHHHHHHHhcCCCEEEeccHHHHhccCCC---------------------------CCcHHHHHHHHHHH-----H
Confidence 23456666543 46789999999998631110 01111223333321 1
Q ss_pred CCCceEEEEecCCCC-----CCChhhhcCCCceeEEEecCCCHHHHHHHHHHhc
Q 037859 343 SGEERIIVFTTNYVD-----KLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYL 391 (504)
Q Consensus 343 ~~~~~ivI~tTN~~e-----~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l 391 (504)
..+++.+|++||..+ .+||||.| ||+ .|.++.|+.+++..|++.+.
T Consensus 312 ~~g~i~vIgATt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 312 SSGKIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLK 362 (758)
T ss_pred hCCCeEEEecCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHH
Confidence 245688999999876 47999999 996 79999999999999998654
No 93
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.52 E-value=1.2e-13 Score=149.88 Aligned_cols=146 Identities=23% Similarity=0.391 Sum_probs=112.5
Q ss_pred CCccccccccChhHHHHHHHhh-----cccccccCCCCCcHHHHHHHHHHhcCC------------------------cE
Q 037859 204 HPATFDTLAMETKKKEEIKKDL-----KKGYLLYGPPGTGKSTMIAAMANFLNY------------------------DV 254 (504)
Q Consensus 204 ~p~~f~~~~~~~~~k~~i~~~l-----~rg~LL~GPpGtGKTsla~aiA~~l~~------------------------~i 254 (504)
+|.+|+++++++..++.+...+ +..||||||||+|||++|+++|+.+++ ++
T Consensus 11 RP~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv 90 (563)
T PRK06647 11 RPRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDV 90 (563)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCe
Confidence 6899999999999999998888 556999999999999999999999864 23
Q ss_pred EEEeccccCChHHHHHHHHhc------cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhH
Q 037859 255 YDLELTTVQDNSELRSLLIDT------SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVT 328 (504)
Q Consensus 255 ~~l~~~~~~~~~~l~~l~~~~------~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (504)
+.++...-..-..++.+.... ...-|++|||+|.+ +...
T Consensus 91 ~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~L-----------------------------------s~~a 135 (563)
T PRK06647 91 IEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHML-----------------------------------SNSA 135 (563)
T ss_pred EEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhc-----------------------------------CHHH
Confidence 444332222335566655332 35679999999986 1235
Q ss_pred HHHHhhhhcCccccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhc
Q 037859 329 LSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYL 391 (504)
Q Consensus 329 ls~lL~~lDg~~~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l 391 (504)
++.||..++.. +...++|++|+.+.+|.++|.. |+ ..++|..++.++...+++..+
T Consensus 136 ~naLLK~LEep----p~~~vfI~~tte~~kL~~tI~S--Rc-~~~~f~~l~~~el~~~L~~i~ 191 (563)
T PRK06647 136 FNALLKTIEEP----PPYIVFIFATTEVHKLPATIKS--RC-QHFNFRLLSLEKIYNMLKKVC 191 (563)
T ss_pred HHHHHHhhccC----CCCEEEEEecCChHHhHHHHHH--hc-eEEEecCCCHHHHHHHHHHHH
Confidence 77888888753 3557888888888999999999 88 478999999988887777655
No 94
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.52 E-value=1.2e-13 Score=150.53 Aligned_cols=148 Identities=17% Similarity=0.341 Sum_probs=114.7
Q ss_pred CCCccccccccChhHHHHHHHhh-----cccccccCCCCCcHHHHHHHHHHhcCCc------------------------
Q 037859 203 EHPATFDTLAMETKKKEEIKKDL-----KKGYLLYGPPGTGKSTMIAAMANFLNYD------------------------ 253 (504)
Q Consensus 203 ~~p~~f~~~~~~~~~k~~i~~~l-----~rg~LL~GPpGtGKTsla~aiA~~l~~~------------------------ 253 (504)
..|.+|+++++++..++.+...+ +.+||||||+|+|||++|+++|+.+++.
T Consensus 18 yRP~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~ 97 (598)
T PRK09111 18 YRPQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIME 97 (598)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhc
Confidence 46899999999999999998887 5679999999999999999999998653
Q ss_pred -----EEEEeccccCChHHHHHHHHhc------cCCeEEEEecccccccccccccccccccccccccCcccccccccCCC
Q 037859 254 -----VYDLELTTVQDNSELRSLLIDT------SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGS 322 (504)
Q Consensus 254 -----i~~l~~~~~~~~~~l~~l~~~~------~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (504)
++.++..+..+..+++.++... ...-|+||||+|.+
T Consensus 98 g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~L--------------------------------- 144 (598)
T PRK09111 98 GRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHML--------------------------------- 144 (598)
T ss_pred CCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhC---------------------------------
Confidence 2233323323445677766544 24679999999986
Q ss_pred cchhhHHHHHhhhhcCccccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcC
Q 037859 323 KKSKVTLSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLD 392 (504)
Q Consensus 323 ~~~~~~ls~lL~~lDg~~~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~ 392 (504)
+....+.||..|+.. .+..++|++|+.++++.+.++. |+ ..+.|..++.++....++..+.
T Consensus 145 --s~~a~naLLKtLEeP----p~~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~ 205 (598)
T PRK09111 145 --STAAFNALLKTLEEP----PPHVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAA 205 (598)
T ss_pred --CHHHHHHHHHHHHhC----CCCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHH
Confidence 123577888888754 3457888888888899999988 87 6899999999988888777654
No 95
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.51 E-value=1.9e-13 Score=146.40 Aligned_cols=147 Identities=20% Similarity=0.326 Sum_probs=113.7
Q ss_pred CCccccccccChhHHHHHHHhh-----cccccccCCCCCcHHHHHHHHHHhcCC------------------------cE
Q 037859 204 HPATFDTLAMETKKKEEIKKDL-----KKGYLLYGPPGTGKSTMIAAMANFLNY------------------------DV 254 (504)
Q Consensus 204 ~p~~f~~~~~~~~~k~~i~~~l-----~rg~LL~GPpGtGKTsla~aiA~~l~~------------------------~i 254 (504)
+|.+|+++++++..++.+...+ +..||||||||+|||++|+++|+.+.+ ++
T Consensus 9 RP~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv 88 (535)
T PRK08451 9 RPKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDI 88 (535)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeE
Confidence 6899999999999999998888 556899999999999999999998732 34
Q ss_pred EEEeccccCChHHHHHHHHhc------cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhH
Q 037859 255 YDLELTTVQDNSELRSLLIDT------SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVT 328 (504)
Q Consensus 255 ~~l~~~~~~~~~~l~~l~~~~------~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (504)
+.++...-.+-..++.+.... ...-|++|||+|.+ +...
T Consensus 89 ~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~L-----------------------------------t~~A 133 (535)
T PRK08451 89 IEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHML-----------------------------------TKEA 133 (535)
T ss_pred EEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccC-----------------------------------CHHH
Confidence 555443322346677776542 24569999999986 2346
Q ss_pred HHHHhhhhcCccccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcC
Q 037859 329 LSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLD 392 (504)
Q Consensus 329 ls~lL~~lDg~~~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~ 392 (504)
.+.||..|+.. +...++|++|+.+.+|.+++.. |. .+++|..++.++....++..+.
T Consensus 134 ~NALLK~LEEp----p~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~ 190 (535)
T PRK08451 134 FNALLKTLEEP----PSYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILE 190 (535)
T ss_pred HHHHHHHHhhc----CCceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHH
Confidence 77889888754 3446778888888999999999 86 6899999999888777776554
No 96
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=7.5e-14 Score=146.45 Aligned_cols=147 Identities=16% Similarity=0.321 Sum_probs=109.7
Q ss_pred CCCccccccccChhHHHHHHHhh-----cccccccCCCCCcHHHHHHHHHHhcCCc------------------------
Q 037859 203 EHPATFDTLAMETKKKEEIKKDL-----KKGYLLYGPPGTGKSTMIAAMANFLNYD------------------------ 253 (504)
Q Consensus 203 ~~p~~f~~~~~~~~~k~~i~~~l-----~rg~LL~GPpGtGKTsla~aiA~~l~~~------------------------ 253 (504)
.+|.+|+++++++..++.+...+ +..||||||||||||++|+++|+.+.+.
T Consensus 10 ~RP~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~ 89 (397)
T PRK14955 10 YRPKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRD 89 (397)
T ss_pred cCCCcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHH
Confidence 36889999999999999888877 5569999999999999999999998652
Q ss_pred --------EEEEeccccCChHHHHHHHHhc------cCCeEEEEecccccccccccccccccccccccccCccccccccc
Q 037859 254 --------VYDLELTTVQDNSELRSLLIDT------SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKED 319 (504)
Q Consensus 254 --------i~~l~~~~~~~~~~l~~l~~~~------~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (504)
++.++.......+.++.+.... ....|+||||+|.+-
T Consensus 90 ~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~----------------------------- 140 (397)
T PRK14955 90 FDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLS----------------------------- 140 (397)
T ss_pred HhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCC-----------------------------
Confidence 2333332222345666655444 246799999999861
Q ss_pred CCCcchhhHHHHHhhhhcCccccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhc
Q 037859 320 GGSKKSKVTLSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYL 391 (504)
Q Consensus 320 ~~~~~~~~~ls~lL~~lDg~~~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l 391 (504)
....+.||..++.. .+..++|++|+.+..+-++|.+ |+ ..++|..++.++....++..+
T Consensus 141 ------~~~~~~LLk~LEep----~~~t~~Il~t~~~~kl~~tl~s--R~-~~v~f~~l~~~ei~~~l~~~~ 199 (397)
T PRK14955 141 ------IAAFNAFLKTLEEP----PPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLEEIQQQLQGIC 199 (397)
T ss_pred ------HHHHHHHHHHHhcC----CCCeEEEEEeCChHHhHHHHHH--HH-HHhhcCCCCHHHHHHHHHHHH
Confidence 12456778877643 3446777777878899999998 77 479999999888887777655
No 97
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.51 E-value=1.8e-13 Score=145.35 Aligned_cols=146 Identities=20% Similarity=0.291 Sum_probs=109.5
Q ss_pred CCccccccccChhHHHHHHHhh-----cccccccCCCCCcHHHHHHHHHHhcCC-------------------------c
Q 037859 204 HPATFDTLAMETKKKEEIKKDL-----KKGYLLYGPPGTGKSTMIAAMANFLNY-------------------------D 253 (504)
Q Consensus 204 ~p~~f~~~~~~~~~k~~i~~~l-----~rg~LL~GPpGtGKTsla~aiA~~l~~-------------------------~ 253 (504)
.|.+|+++++++..++.+...+ +..||||||||||||++|+++|+.+.+ +
T Consensus 12 RP~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d 91 (451)
T PRK06305 12 RPQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD 91 (451)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc
Confidence 6889999999999998888887 556999999999999999999998754 2
Q ss_pred EEEEeccccCChHHHHHHHHhc------cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhh
Q 037859 254 VYDLELTTVQDNSELRSLLIDT------SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKV 327 (504)
Q Consensus 254 i~~l~~~~~~~~~~l~~l~~~~------~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (504)
++.++.....+.+.++.+.... ..+.|++|||+|.+- ..
T Consensus 92 ~~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt-----------------------------------~~ 136 (451)
T PRK06305 92 VLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLT-----------------------------------KE 136 (451)
T ss_pred eEEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhC-----------------------------------HH
Confidence 3344332222234454433222 467899999999861 12
Q ss_pred HHHHHhhhhcCccccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhc
Q 037859 328 TLSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYL 391 (504)
Q Consensus 328 ~ls~lL~~lDg~~~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l 391 (504)
..+.||..|+.. .+..++|++||.+.+|.++|.+ |+ ..++|..++.++....+...+
T Consensus 137 ~~n~LLk~lEep----~~~~~~Il~t~~~~kl~~tI~s--Rc-~~v~f~~l~~~el~~~L~~~~ 193 (451)
T PRK06305 137 AFNSLLKTLEEP----PQHVKFFLATTEIHKIPGTILS--RC-QKMHLKRIPEETIIDKLALIA 193 (451)
T ss_pred HHHHHHHHhhcC----CCCceEEEEeCChHhcchHHHH--hc-eEEeCCCCCHHHHHHHHHHHH
Confidence 457788888753 3457788888989999999999 88 579999999988877776654
No 98
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.50 E-value=1.4e-13 Score=143.27 Aligned_cols=141 Identities=21% Similarity=0.306 Sum_probs=104.7
Q ss_pred cccccccChhHHHHHHHhh--------------cccccccCCCCCcHHHHHHHHHHhcCCc-------------------
Q 037859 207 TFDTLAMETKKKEEIKKDL--------------KKGYLLYGPPGTGKSTMIAAMANFLNYD------------------- 253 (504)
Q Consensus 207 ~f~~~~~~~~~k~~i~~~l--------------~rg~LL~GPpGtGKTsla~aiA~~l~~~------------------- 253 (504)
.|+++++++..++.+...+ +.+|||+||||+|||++|+++|+.+.++
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~ 82 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAG 82 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcC
Confidence 4788899998888777666 3459999999999999999999987543
Q ss_pred ----EEEEecccc-CChHHHHHHHHhcc------CCeEEEEecccccccccccccccccccccccccCcccccccccCCC
Q 037859 254 ----VYDLELTTV-QDNSELRSLLIDTS------SKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGS 322 (504)
Q Consensus 254 ----i~~l~~~~~-~~~~~l~~l~~~~~------~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (504)
++.+..... ....+++.++.... .+.|+||||+|.+-
T Consensus 83 ~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~-------------------------------- 130 (394)
T PRK07940 83 THPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLT-------------------------------- 130 (394)
T ss_pred CCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcC--------------------------------
Confidence 333333221 23456777765542 45699999999861
Q ss_pred cchhhHHHHHhhhhcCccccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHH
Q 037859 323 KKSKVTLSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKN 389 (504)
Q Consensus 323 ~~~~~~ls~lL~~lDg~~~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~ 389 (504)
....+.||..|+.. +.+.++|++|+.++.|+|++++ |+ ..|.|+.|+.++...++..
T Consensus 131 ---~~aanaLLk~LEep----~~~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~ 187 (394)
T PRK07940 131 ---ERAANALLKAVEEP----PPRTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVR 187 (394)
T ss_pred ---HHHHHHHHHHhhcC----CCCCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHH
Confidence 22457788888753 3446677777779999999999 88 6899999999998877764
No 99
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=2.1e-13 Score=148.92 Aligned_cols=146 Identities=15% Similarity=0.336 Sum_probs=110.7
Q ss_pred CCccccccccChhHHHHHHHhh-----cccccccCCCCCcHHHHHHHHHHhcCCc-------------------------
Q 037859 204 HPATFDTLAMETKKKEEIKKDL-----KKGYLLYGPPGTGKSTMIAAMANFLNYD------------------------- 253 (504)
Q Consensus 204 ~p~~f~~~~~~~~~k~~i~~~l-----~rg~LL~GPpGtGKTsla~aiA~~l~~~------------------------- 253 (504)
+|.+|+++++++..++.+...+ +.+|||+||||||||++|+++|+.+++.
T Consensus 11 RP~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~ 90 (620)
T PRK14954 11 RPSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDF 90 (620)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHH
Confidence 6889999999999999888877 5569999999999999999999999762
Q ss_pred -------EEEEeccccCChHHHHHHHHhc------cCCeEEEEecccccccccccccccccccccccccCcccccccccC
Q 037859 254 -------VYDLELTTVQDNSELRSLLIDT------SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDG 320 (504)
Q Consensus 254 -------i~~l~~~~~~~~~~l~~l~~~~------~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (504)
+..++.......++++.+.... ..+-|++|||+|.+-
T Consensus 91 ~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt------------------------------ 140 (620)
T PRK14954 91 DAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLS------------------------------ 140 (620)
T ss_pred hccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcC------------------------------
Confidence 2223322222345677665544 356799999999861
Q ss_pred CCcchhhHHHHHhhhhcCccccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhc
Q 037859 321 GSKKSKVTLSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYL 391 (504)
Q Consensus 321 ~~~~~~~~ls~lL~~lDg~~~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l 391 (504)
....+.||..|+.. .+..++|++|+.+.+|.++|.+ |. ..++|..++.++....+...+
T Consensus 141 -----~~a~naLLK~LEeP----p~~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~ 199 (620)
T PRK14954 141 -----TAAFNAFLKTLEEP----PPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMIC 199 (620)
T ss_pred -----HHHHHHHHHHHhCC----CCCeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHH
Confidence 12467788888754 3446777777888999999998 77 689999999988877766544
No 100
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=1.4e-13 Score=147.40 Aligned_cols=166 Identities=19% Similarity=0.275 Sum_probs=122.1
Q ss_pred cccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccC------ChHHHHHHHHhcc--CCeEEEEeccccccccccccccc
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQ------DNSELRSLLIDTS--SKSILVIEDIDCSLDLTGQREKK 299 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~------~~~~l~~l~~~~~--~~~Il~iDeiD~~~~~~~~~~~~ 299 (504)
.+||+|+||||||++++++|.++|.+++.++|.++. +...+...|..+. +|+|||+-++|.+. ..+
T Consensus 433 ~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~---id~--- 506 (953)
T KOG0736|consen 433 SVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLG---IDQ--- 506 (953)
T ss_pred EEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceee---ecC---
Confidence 389999999999999999999999999999998873 4456778887764 79999999999863 111
Q ss_pred ccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCC
Q 037859 300 KEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCC 379 (504)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~ 379 (504)
+.+....-...+..++. +|-.. ......|+|+||+..+.|++.+.+ -|-..|.++.|+
T Consensus 507 ------------------dgged~rl~~~i~~~ls-~e~~~-~~~~~~ivv~t~~s~~~lp~~i~~--~f~~ei~~~~ls 564 (953)
T KOG0736|consen 507 ------------------DGGEDARLLKVIRHLLS-NEDFK-FSCPPVIVVATTSSIEDLPADIQS--LFLHEIEVPALS 564 (953)
T ss_pred ------------------CCchhHHHHHHHHHHHh-ccccc-CCCCceEEEEeccccccCCHHHHH--hhhhhccCCCCC
Confidence 00011111222333333 33332 234668999999999999999999 777899999999
Q ss_pred HHHHHHHHHHhcCcCCcchHHHHhcCccCC-CCCHHHHHHhhC
Q 037859 380 FEAFKVLAKNYLDIDSHELYAVIESMPAET-NMTPADVAENLM 421 (504)
Q Consensus 380 ~e~~~~i~~~~l~~~~~~~~~~i~~l~~~~-~~s~a~i~~~l~ 421 (504)
.++|.+|++.|+.............++..+ +||.+++..+..
T Consensus 565 e~qRl~iLq~y~~~~~~n~~v~~k~~a~~t~gfs~~~L~~l~~ 607 (953)
T KOG0736|consen 565 EEQRLEILQWYLNHLPLNQDVNLKQLARKTSGFSFGDLEALVA 607 (953)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCHHHHHHHhc
Confidence 999999999998654333223334555555 999999986655
No 101
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=3.4e-13 Score=147.96 Aligned_cols=145 Identities=23% Similarity=0.376 Sum_probs=111.5
Q ss_pred CCccccccccChhHHHHHHHhh-----cccccccCCCCCcHHHHHHHHHHhcCC--------------------------
Q 037859 204 HPATFDTLAMETKKKEEIKKDL-----KKGYLLYGPPGTGKSTMIAAMANFLNY-------------------------- 252 (504)
Q Consensus 204 ~p~~f~~~~~~~~~k~~i~~~l-----~rg~LL~GPpGtGKTsla~aiA~~l~~-------------------------- 252 (504)
.|..|+.+++++..++.+...+ ..+||||||||||||++|+++|+.+++
T Consensus 11 RP~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~ 90 (620)
T PRK14948 11 RPQRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNAL 90 (620)
T ss_pred CCCcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCc
Confidence 5889999999999999888877 456899999999999999999999865
Q ss_pred cEEEEeccccCChHHHHHHHHhc------cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchh
Q 037859 253 DVYDLELTTVQDNSELRSLLIDT------SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSK 326 (504)
Q Consensus 253 ~i~~l~~~~~~~~~~l~~l~~~~------~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (504)
+++.++.......+.++.++..+ ...-|++|||+|.+ +.
T Consensus 91 D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~L-----------------------------------t~ 135 (620)
T PRK14948 91 DVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHML-----------------------------------ST 135 (620)
T ss_pred cEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECcccc-----------------------------------CH
Confidence 34444443323445677776554 24579999999986 12
Q ss_pred hHHHHHhhhhcCccccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHh
Q 037859 327 VTLSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNY 390 (504)
Q Consensus 327 ~~ls~lL~~lDg~~~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~ 390 (504)
...+.||..|+.- .+..++|++|+.++.+-++|+. |+ ..++|..++.++....+...
T Consensus 136 ~a~naLLK~LEeP----p~~tvfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~~ei~~~L~~i 192 (620)
T PRK14948 136 AAFNALLKTLEEP----PPRVVFVLATTDPQRVLPTIIS--RC-QRFDFRRIPLEAMVQHLSEI 192 (620)
T ss_pred HHHHHHHHHHhcC----CcCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHH
Confidence 3567889998853 3457888888889999999998 88 67899988887766655543
No 102
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=2.6e-13 Score=144.30 Aligned_cols=189 Identities=16% Similarity=0.263 Sum_probs=129.8
Q ss_pred cccccChhHHHHHHHhh------cccccccCCCCCcHHHHHHHHHHhcCC----cEEEEeccccCC--hHHHH----HHH
Q 037859 209 DTLAMETKKKEEIKKDL------KKGYLLYGPPGTGKSTMIAAMANFLNY----DVYDLELTTVQD--NSELR----SLL 272 (504)
Q Consensus 209 ~~~~~~~~~k~~i~~~l------~rg~LL~GPpGtGKTsla~aiA~~l~~----~i~~l~~~~~~~--~~~l~----~l~ 272 (504)
.+++..+..|+...++. +..+||+||+|||||.|++++++++.. ++..++|+.+.. -+.++ ..|
T Consensus 408 ~d~i~~~s~kke~~n~~~spv~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vf 487 (952)
T KOG0735|consen 408 HDFIQVPSYKKENANQELSPVFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVF 487 (952)
T ss_pred CceeecchhhhhhhhhhcccccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHH
Confidence 45556666666665544 455999999999999999999999854 355678877643 23333 444
Q ss_pred Hhc--cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccCCCceEEE
Q 037859 273 IDT--SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERIIV 350 (504)
Q Consensus 273 ~~~--~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~~~~ivI 350 (504)
.++ -.|+||++||+|+++...+. ..+........+..+||.+-......+..+.+|
T Consensus 488 se~~~~~PSiIvLDdld~l~~~s~~----------------------e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~I 545 (952)
T KOG0735|consen 488 SEALWYAPSIIVLDDLDCLASASSN----------------------ENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVI 545 (952)
T ss_pred HHHHhhCCcEEEEcchhhhhccCcc----------------------cCCcchHHHHHHHHHHHHHHHHHHccCcEEEEE
Confidence 443 37999999999998641110 011122233345566654432222334446789
Q ss_pred EecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCcCC-cchHHHHhcCccCC-CCCHHHHHHh
Q 037859 351 FTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDIDS-HELYAVIESMPAET-NMTPADVAEN 419 (504)
Q Consensus 351 ~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~~~-~~~~~~i~~l~~~~-~~s~a~i~~~ 419 (504)
+|.+....|+|-|..|++|+.++.++.|..++|..|+...+.... ....++++-++.++ ||.+-|+.-+
T Consensus 546 at~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~if 616 (952)
T KOG0735|consen 546 ATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIF 616 (952)
T ss_pred EechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHH
Confidence 999999999999999999999999999999999999999886432 22344445455555 8988887643
No 103
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.48 E-value=2.3e-13 Score=147.46 Aligned_cols=152 Identities=24% Similarity=0.381 Sum_probs=106.1
Q ss_pred CCCccccccccChhHHHHHHHhh----cccccccCCCCCcHHHHHHHHHHhc----------CCcEEEEeccccC-ChHH
Q 037859 203 EHPATFDTLAMETKKKEEIKKDL----KKGYLLYGPPGTGKSTMIAAMANFL----------NYDVYDLELTTVQ-DNSE 267 (504)
Q Consensus 203 ~~p~~f~~~~~~~~~k~~i~~~l----~rg~LL~GPpGtGKTsla~aiA~~l----------~~~i~~l~~~~~~-~~~~ 267 (504)
.+|.+|++++++....+.+...+ +..+|||||||||||++|+++.++. +.+++.++++... +...
T Consensus 59 ~rp~~f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~ 138 (531)
T TIGR02902 59 TRPKSFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERG 138 (531)
T ss_pred hCcCCHHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCccc
Confidence 46889999999998888887666 5679999999999999999998642 3578888886421 1111
Q ss_pred HH-HHH--------------------------HhccCCeEEEEecccccccccccccccccccccccccCcccccccccC
Q 037859 268 LR-SLL--------------------------IDTSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDG 320 (504)
Q Consensus 268 l~-~l~--------------------------~~~~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (504)
+. .++ .......+|||||||.+-
T Consensus 139 ~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~------------------------------ 188 (531)
T TIGR02902 139 IADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELH------------------------------ 188 (531)
T ss_pred cchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCC------------------------------
Confidence 10 011 011245799999999862
Q ss_pred CCcchhhHHHHHhhhhcCc--------cc-----------------cCCCceEEEEecCCCCCCChhhhcCCCceeEEEe
Q 037859 321 GSKKSKVTLSGLLNFIDGL--------WS-----------------ASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEM 375 (504)
Q Consensus 321 ~~~~~~~~ls~lL~~lDg~--------~~-----------------~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~ 375 (504)
....+.||..|+.- .+ ...+-++|++|||.++.|+|||++ |+ ..|.|
T Consensus 189 -----~~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~-~~I~f 260 (531)
T TIGR02902 189 -----PVQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RC-VEIFF 260 (531)
T ss_pred -----HHHHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hh-heeeC
Confidence 22344444444210 00 011225667788899999999999 98 57899
Q ss_pred cCCCHHHHHHHHHHhcC
Q 037859 376 SYCCFEAFKVLAKNYLD 392 (504)
Q Consensus 376 ~~p~~e~~~~i~~~~l~ 392 (504)
+.++.+++..|+++.+.
T Consensus 261 ~pL~~eei~~Il~~~a~ 277 (531)
T TIGR02902 261 RPLLDEEIKEIAKNAAE 277 (531)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999998764
No 104
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.47 E-value=5e-13 Score=136.93 Aligned_cols=148 Identities=14% Similarity=0.240 Sum_probs=103.1
Q ss_pred CCCccccccccChhHHHHHHHhh--cc--cccccCCCCCcHHHHHHHHHHhcCC-----cEEEEeccccCC---------
Q 037859 203 EHPATFDTLAMETKKKEEIKKDL--KK--GYLLYGPPGTGKSTMIAAMANFLNY-----DVYDLELTTVQD--------- 264 (504)
Q Consensus 203 ~~p~~f~~~~~~~~~k~~i~~~l--~r--g~LL~GPpGtGKTsla~aiA~~l~~-----~i~~l~~~~~~~--------- 264 (504)
..|.+|+++++++..++.+...+ ++ ++|||||||||||++|+++|+++.. ++..+++.....
T Consensus 9 y~P~~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 88 (337)
T PRK12402 9 YRPALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGKKYLVED 88 (337)
T ss_pred hCCCcHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcchhhhhcC
Confidence 36899999999999999988877 33 6899999999999999999998842 356666654210
Q ss_pred -----------------hHHHHHHHHhc-------cCCeEEEEecccccccccccccccccccccccccCcccccccccC
Q 037859 265 -----------------NSELRSLLIDT-------SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDG 320 (504)
Q Consensus 265 -----------------~~~l~~l~~~~-------~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (504)
...++.++... ..+.+|+|||+|.+-
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~------------------------------ 138 (337)
T PRK12402 89 PRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALR------------------------------ 138 (337)
T ss_pred cchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCC------------------------------
Confidence 11122222111 245699999999751
Q ss_pred CCcchhhHHHHHhhhhcCccccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcC
Q 037859 321 GSKKSKVTLSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLD 392 (504)
Q Consensus 321 ~~~~~~~~ls~lL~~lDg~~~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~ 392 (504)
......|+..++... ....+|++|+.+..+.++|.. |+ ..+.+..|+.+++..+++..+.
T Consensus 139 -----~~~~~~L~~~le~~~----~~~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~ 198 (337)
T PRK12402 139 -----EDAQQALRRIMEQYS----RTCRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAE 198 (337)
T ss_pred -----HHHHHHHHHHHHhcc----CCCeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHH
Confidence 012334555555432 224566677777788888888 76 5799999999999888887654
No 105
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.47 E-value=4.1e-13 Score=135.09 Aligned_cols=145 Identities=15% Similarity=0.190 Sum_probs=103.7
Q ss_pred ccccChhHHHHHHHhh--cccccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccCChHHHHHH----------------
Q 037859 210 TLAMETKKKEEIKKDL--KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQDNSELRSL---------------- 271 (504)
Q Consensus 210 ~~~~~~~~k~~i~~~l--~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~~l~~l---------------- 271 (504)
.+.++++....|+..+ ++.+||.||||||||++++.+|..++++++.++++......++...
T Consensus 46 ~y~f~~~~~~~vl~~l~~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~ 125 (327)
T TIGR01650 46 AYLFDKATTKAICAGFAYDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRD 125 (327)
T ss_pred CccCCHHHHHHHHHHHhcCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEec
Confidence 5677777777777777 7889999999999999999999999999999988765332222110
Q ss_pred --H-HhccCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcC--cc------
Q 037859 272 --L-IDTSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDG--LW------ 340 (504)
Q Consensus 272 --~-~~~~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg--~~------ 340 (504)
+ .....++++++||||.+ ...+++.|+..||. ..
T Consensus 126 GpL~~A~~~g~illlDEin~a-----------------------------------~p~~~~~L~~lLE~~~~l~i~~~~ 170 (327)
T TIGR01650 126 GILPWALQHNVALCFDEYDAG-----------------------------------RPDVMFVIQRVLEAGGKLTLLDQN 170 (327)
T ss_pred CcchhHHhCCeEEEechhhcc-----------------------------------CHHHHHHHHHHhccCCeEEECCCc
Confidence 1 11136788999999984 11234443333331 10
Q ss_pred --ccCCCceEEEEecCCCC------------CCChhhhcCCCceeEEEecCCCHHHHHHHHHHhc
Q 037859 341 --SASGEERIIVFTTNYVD------------KLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYL 391 (504)
Q Consensus 341 --~~~~~~~ivI~tTN~~e------------~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l 391 (504)
-.......+|+|+|..+ .|++|++. ||-+.+.++||+.+.-..|+....
T Consensus 171 ~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD--RF~i~~~~~Yp~~e~E~~Il~~~~ 233 (327)
T TIGR01650 171 RVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMD--RWSIVTTLNYLEHDNEAAIVLAKA 233 (327)
T ss_pred eEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHh--heeeEeeCCCCCHHHHHHHHHhhc
Confidence 01223467899999865 36899999 998788999999999888887654
No 106
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.46 E-value=5.4e-13 Score=148.94 Aligned_cols=146 Identities=18% Similarity=0.364 Sum_probs=109.1
Q ss_pred ccccChhHHHHHHHhh------------ccc-ccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccCChHHHHHHHH---
Q 037859 210 TLAMETKKKEEIKKDL------------KKG-YLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQDNSELRSLLI--- 273 (504)
Q Consensus 210 ~~~~~~~~k~~i~~~l------------~rg-~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~~l~~l~~--- 273 (504)
.|+++++.++.|...+ |.| +||+||||||||.+|+++|..++.+++.++++.......+.+++.
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~ 538 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPP 538 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCC
Confidence 4678888888877776 233 899999999999999999999999999999887643222332221
Q ss_pred ------------h---ccCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcC
Q 037859 274 ------------D---TSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDG 338 (504)
Q Consensus 274 ------------~---~~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg 338 (504)
+ ....+||||||||.+ +....+.||..||.
T Consensus 539 gyvg~~~~g~L~~~v~~~p~sVlllDEieka-----------------------------------~~~v~~~LLq~ld~ 583 (758)
T PRK11034 539 GYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA-----------------------------------HPDVFNLLLQVMDN 583 (758)
T ss_pred CcccccccchHHHHHHhCCCcEEEeccHhhh-----------------------------------hHHHHHHHHHHHhc
Confidence 1 134699999999985 23467788888873
Q ss_pred c-c-ccCC-----CceEEEEecCCC-------------------------CCCChhhhcCCCceeEEEecCCCHHHHHHH
Q 037859 339 L-W-SASG-----EERIIVFTTNYV-------------------------DKLDPALIRRGRMDKHIEMSYCCFEAFKVL 386 (504)
Q Consensus 339 ~-~-~~~~-----~~~ivI~tTN~~-------------------------e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i 386 (504)
- - ...+ .+.|+|+|||.- ..+.|.|+. |+|.+|.|...+.++...|
T Consensus 584 G~ltd~~g~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I 661 (758)
T PRK11034 584 GTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQV 661 (758)
T ss_pred CeeecCCCceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHH
Confidence 2 1 1111 356899999922 236688888 9999999999999999999
Q ss_pred HHHhcC
Q 037859 387 AKNYLD 392 (504)
Q Consensus 387 ~~~~l~ 392 (504)
+..++.
T Consensus 662 ~~~~l~ 667 (758)
T PRK11034 662 VDKFIV 667 (758)
T ss_pred HHHHHH
Confidence 988874
No 107
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=5.2e-13 Score=146.52 Aligned_cols=147 Identities=16% Similarity=0.341 Sum_probs=110.0
Q ss_pred CCccccccccChhHHHHHHHhh-----cccccccCCCCCcHHHHHHHHHHhcCC-------------------------c
Q 037859 204 HPATFDTLAMETKKKEEIKKDL-----KKGYLLYGPPGTGKSTMIAAMANFLNY-------------------------D 253 (504)
Q Consensus 204 ~p~~f~~~~~~~~~k~~i~~~l-----~rg~LL~GPpGtGKTsla~aiA~~l~~-------------------------~ 253 (504)
.|.+|+++++++..++.+...+ +..||||||||||||++|+++|+.+++ +
T Consensus 11 RP~~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d 90 (585)
T PRK14950 11 RSQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVD 90 (585)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCe
Confidence 6899999999999999988877 344899999999999999999998753 2
Q ss_pred EEEEeccccCChHHHHHHHHhc------cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhh
Q 037859 254 VYDLELTTVQDNSELRSLLIDT------SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKV 327 (504)
Q Consensus 254 i~~l~~~~~~~~~~l~~l~~~~------~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (504)
++.++.......+.++.+.... ....|+||||+|.+- ..
T Consensus 91 ~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~-----------------------------------~~ 135 (585)
T PRK14950 91 VIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLS-----------------------------------TA 135 (585)
T ss_pred EEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCC-----------------------------------HH
Confidence 3344443333345565554332 346799999999861 23
Q ss_pred HHHHHhhhhcCccccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcC
Q 037859 328 TLSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLD 392 (504)
Q Consensus 328 ~ls~lL~~lDg~~~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~ 392 (504)
.++.||..|+.. ....+||++|+..+.+.+.|.. |+ ..+.|..++.++...++.....
T Consensus 136 a~naLLk~LEep----p~~tv~Il~t~~~~kll~tI~S--R~-~~i~f~~l~~~el~~~L~~~a~ 193 (585)
T PRK14950 136 AFNALLKTLEEP----PPHAIFILATTEVHKVPATILS--RC-QRFDFHRHSVADMAAHLRKIAA 193 (585)
T ss_pred HHHHHHHHHhcC----CCCeEEEEEeCChhhhhHHHHh--cc-ceeeCCCCCHHHHHHHHHHHHH
Confidence 567788888764 2446788888888889899988 77 5789999998888877776643
No 108
>PRK06893 DNA replication initiation factor; Validated
Probab=99.46 E-value=4.5e-13 Score=130.25 Aligned_cols=152 Identities=14% Similarity=0.227 Sum_probs=96.7
Q ss_pred ecCCCccccccccChhHHHHHHHhh--------cccccccCCCCCcHHHHHHHHHHhc---CCcEEEEeccccCChHHHH
Q 037859 201 FFEHPATFDTLAMETKKKEEIKKDL--------KKGYLLYGPPGTGKSTMIAAMANFL---NYDVYDLELTTVQDNSELR 269 (504)
Q Consensus 201 ~~~~p~~f~~~~~~~~~k~~i~~~l--------~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~~~~~~l~ 269 (504)
+...+.+|++++..+.. .....+ ...++||||||||||+|+.|+|+++ +....++++.... ....
T Consensus 8 ~~~~~~~fd~f~~~~~~--~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~--~~~~ 83 (229)
T PRK06893 8 HQIDDETLDNFYADNNL--LLLDSLRKNFIDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ--YFSP 83 (229)
T ss_pred CCCCcccccccccCChH--HHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh--hhhH
Confidence 44556789998866532 122211 2236899999999999999999986 4566666664321 1122
Q ss_pred HHHHhccCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccCCCceEE
Q 037859 270 SLLIDTSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERII 349 (504)
Q Consensus 270 ~l~~~~~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~~~~iv 349 (504)
+.+....+..+|+|||||.+. +. ......+-.++|.+ .. .+..++
T Consensus 84 ~~~~~~~~~dlLilDDi~~~~---~~---------------------------~~~~~~l~~l~n~~---~~--~~~~il 128 (229)
T PRK06893 84 AVLENLEQQDLVCLDDLQAVI---GN---------------------------EEWELAIFDLFNRI---KE--QGKTLL 128 (229)
T ss_pred HHHhhcccCCEEEEeChhhhc---CC---------------------------hHHHHHHHHHHHHH---HH--cCCcEE
Confidence 444455567899999999852 11 11122344444433 21 233455
Q ss_pred EEecC-CCCCC---ChhhhcCCCceeEEEecCCCHHHHHHHHHHhc
Q 037859 350 VFTTN-YVDKL---DPALIRRGRMDKHIEMSYCCFEAFKVLAKNYL 391 (504)
Q Consensus 350 I~tTN-~~e~L---d~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l 391 (504)
|+|+| .|..+ .|.|.++.+.+..+.++.|+.+.+..|+++..
T Consensus 129 lits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a 174 (229)
T PRK06893 129 LISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNA 174 (229)
T ss_pred EEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHH
Confidence 55555 45554 48999955556789999999999999998765
No 109
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.46 E-value=1.1e-13 Score=157.55 Aligned_cols=148 Identities=20% Similarity=0.288 Sum_probs=109.2
Q ss_pred cccccccChhHHHHHHHhh----cccccccCCCCCcHHHHHHHHHHhc----------CCcEEEEeccccC--------C
Q 037859 207 TFDTLAMETKKKEEIKKDL----KKGYLLYGPPGTGKSTMIAAMANFL----------NYDVYDLELTTVQ--------D 264 (504)
Q Consensus 207 ~f~~~~~~~~~k~~i~~~l----~rg~LL~GPpGtGKTsla~aiA~~l----------~~~i~~l~~~~~~--------~ 264 (504)
.++.+++.++..+++++.+ +++++|+||||||||++|+++|..+ +.+++.++++.+. .
T Consensus 177 ~~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~ 256 (821)
T CHL00095 177 NLDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGEF 256 (821)
T ss_pred CCCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccHH
Confidence 4677888898888888887 6789999999999999999999986 4789999987542 1
Q ss_pred hHHHHHHHHhc--cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCcccc
Q 037859 265 NSELRSLLIDT--SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSA 342 (504)
Q Consensus 265 ~~~l~~l~~~~--~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~ 342 (504)
...++.++.++ ..++||||||||.++...+ ..+. ...+.+|... .
T Consensus 257 e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~------------------------~~g~----~~~a~lLkp~-----l 303 (821)
T CHL00095 257 EERLKRIFDEIQENNNIILVIDEVHTLIGAGA------------------------AEGA----IDAANILKPA-----L 303 (821)
T ss_pred HHHHHHHHHHHHhcCCeEEEEecHHHHhcCCC------------------------CCCc----ccHHHHhHHH-----H
Confidence 24677888765 3589999999999863110 0011 1233333321 1
Q ss_pred CCCceEEEEecCCCC-----CCChhhhcCCCceeEEEecCCCHHHHHHHHHHh
Q 037859 343 SGEERIIVFTTNYVD-----KLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNY 390 (504)
Q Consensus 343 ~~~~~ivI~tTN~~e-----~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~ 390 (504)
..+++.+|++||..+ ..||+|.| ||. .|.++.|+.++...|++..
T Consensus 304 ~rg~l~~IgaTt~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 304 ARGELQCIGATTLDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGL 353 (821)
T ss_pred hCCCcEEEEeCCHHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHH
Confidence 245688899888764 36999999 995 6899999999988887754
No 110
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=7.6e-13 Score=145.21 Aligned_cols=147 Identities=18% Similarity=0.367 Sum_probs=115.2
Q ss_pred CCCccccccccChhHHHHHHHhh-----cccccccCCCCCcHHHHHHHHHHhcC-------------------------C
Q 037859 203 EHPATFDTLAMETKKKEEIKKDL-----KKGYLLYGPPGTGKSTMIAAMANFLN-------------------------Y 252 (504)
Q Consensus 203 ~~p~~f~~~~~~~~~k~~i~~~l-----~rg~LL~GPpGtGKTsla~aiA~~l~-------------------------~ 252 (504)
.+|.+|+++++++..++.+...+ +..||||||+|+|||++|+++|+.++ .
T Consensus 11 yRP~~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~ 90 (614)
T PRK14971 11 YRPSTFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSY 90 (614)
T ss_pred HCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCC
Confidence 46899999999999999999888 55699999999999999999999875 3
Q ss_pred cEEEEeccccCChHHHHHHHHhcc------CCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchh
Q 037859 253 DVYDLELTTVQDNSELRSLLIDTS------SKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSK 326 (504)
Q Consensus 253 ~i~~l~~~~~~~~~~l~~l~~~~~------~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (504)
+++.++..+......++.++..+. ..-|++|||+|.+ +.
T Consensus 91 n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~L-----------------------------------s~ 135 (614)
T PRK14971 91 NIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHML-----------------------------------SQ 135 (614)
T ss_pred ceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccC-----------------------------------CH
Confidence 455566554444567777775442 4569999999986 12
Q ss_pred hHHHHHhhhhcCccccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhc
Q 037859 327 VTLSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYL 391 (504)
Q Consensus 327 ~~ls~lL~~lDg~~~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l 391 (504)
...+.||..|+.. .+..++|++|+.+.+|-++|+. |+ ..++|..++.++....++..+
T Consensus 136 ~a~naLLK~LEep----p~~tifIL~tt~~~kIl~tI~S--Rc-~iv~f~~ls~~ei~~~L~~ia 193 (614)
T PRK14971 136 AAFNAFLKTLEEP----PSYAIFILATTEKHKILPTILS--RC-QIFDFNRIQVADIVNHLQYVA 193 (614)
T ss_pred HHHHHHHHHHhCC----CCCeEEEEEeCCchhchHHHHh--hh-heeecCCCCHHHHHHHHHHHH
Confidence 3567888888854 3446788888888999999999 87 579999999988887776654
No 111
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.41 E-value=1e-12 Score=126.92 Aligned_cols=151 Identities=13% Similarity=0.175 Sum_probs=95.3
Q ss_pred ecCCCcccccccc--ChhHHHHHHHhh----cccccccCCCCCcHHHHHHHHHHhc---CCcEEEEeccccCChHHHHHH
Q 037859 201 FFEHPATFDTLAM--ETKKKEEIKKDL----KKGYLLYGPPGTGKSTMIAAMANFL---NYDVYDLELTTVQDNSELRSL 271 (504)
Q Consensus 201 ~~~~p~~f~~~~~--~~~~k~~i~~~l----~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~~~~~~l~~l 271 (504)
+...+.+|+++.. +....+.+...+ ++.++|+||||||||++|+++++++ +.+++++++..+.. .....
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~ 84 (226)
T TIGR03420 7 GLPDDPTFDNFYAGGNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQ--ADPEV 84 (226)
T ss_pred CCCCchhhcCcCcCCcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHH--hHHHH
Confidence 3344556778763 222344444433 5679999999999999999999876 46788888877642 22334
Q ss_pred HHhccCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccCCCceEEEE
Q 037859 272 LIDTSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERIIVF 351 (504)
Q Consensus 272 ~~~~~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~~~~ivI~ 351 (504)
+.......+|+|||+|.+-. ... ....|...++.... .+. .+|+
T Consensus 85 ~~~~~~~~lLvIDdi~~l~~------------------------------~~~---~~~~L~~~l~~~~~--~~~-~iIi 128 (226)
T TIGR03420 85 LEGLEQADLVCLDDVEAIAG------------------------------QPE---WQEALFHLYNRVRE--AGG-RLLI 128 (226)
T ss_pred HhhcccCCEEEEeChhhhcC------------------------------ChH---HHHHHHHHHHHHHH--cCC-eEEE
Confidence 44444567999999998520 000 12233333333221 122 4455
Q ss_pred ecC-CCCCC---ChhhhcCCCc--eeEEEecCCCHHHHHHHHHHhc
Q 037859 352 TTN-YVDKL---DPALIRRGRM--DKHIEMSYCCFEAFKVLAKNYL 391 (504)
Q Consensus 352 tTN-~~e~L---d~ALlRpGR~--d~~I~~~~p~~e~~~~i~~~~l 391 (504)
|+| .+..+ ++.|.+ |+ ..+|.++.|+.+++..+++.+.
T Consensus 129 ts~~~~~~~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~ 172 (226)
T TIGR03420 129 AGRAAPAQLPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRA 172 (226)
T ss_pred ECCCChHHCCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHH
Confidence 555 33333 278887 66 4789999999999999887764
No 112
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.41 E-value=1.1e-12 Score=139.09 Aligned_cols=148 Identities=20% Similarity=0.371 Sum_probs=120.8
Q ss_pred CCccccccccChhHHHHHHHhh-----cccccccCCCCCcHHHHHHHHHHhcCCc------------------------E
Q 037859 204 HPATFDTLAMETKKKEEIKKDL-----KKGYLLYGPPGTGKSTMIAAMANFLNYD------------------------V 254 (504)
Q Consensus 204 ~p~~f~~~~~~~~~k~~i~~~l-----~rg~LL~GPpGtGKTsla~aiA~~l~~~------------------------i 254 (504)
+|..|+++++++...+.|...+ ..+|||.||-||||||+|+.+|..+++. +
T Consensus 11 RP~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~Dv 90 (515)
T COG2812 11 RPKTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLIDV 90 (515)
T ss_pred CcccHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCCcccc
Confidence 5889999999999999888888 7789999999999999999999988653 2
Q ss_pred EEEeccccCChHHHHHHHHhcc------CCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhH
Q 037859 255 YDLELTTVQDNSELRSLLIDTS------SKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVT 328 (504)
Q Consensus 255 ~~l~~~~~~~~~~l~~l~~~~~------~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (504)
+.+|..+-.+-+++|.+..+.. +.-|.+|||+|.+ ++..
T Consensus 91 iEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHML-----------------------------------S~~a 135 (515)
T COG2812 91 IEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHML-----------------------------------SKQA 135 (515)
T ss_pred hhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhh-----------------------------------hHHH
Confidence 3333333345567788777652 4569999999986 3557
Q ss_pred HHHHhhhhcCccccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCc
Q 037859 329 LSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDI 393 (504)
Q Consensus 329 ls~lL~~lDg~~~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~ 393 (504)
.+.||..++.- ...+++|++|..+.++++.++. |+ .+..|..-+.++....++.++..
T Consensus 136 fNALLKTLEEP----P~hV~FIlATTe~~Kip~TIlS--Rc-q~f~fkri~~~~I~~~L~~i~~~ 193 (515)
T COG2812 136 FNALLKTLEEP----PSHVKFILATTEPQKIPNTILS--RC-QRFDFKRLDLEEIAKHLAAILDK 193 (515)
T ss_pred HHHHhcccccC----ccCeEEEEecCCcCcCchhhhh--cc-ccccccCCCHHHHHHHHHHHHHh
Confidence 89999998753 5669999999999999999999 88 67889999999888888887764
No 113
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.41 E-value=3.1e-12 Score=134.00 Aligned_cols=159 Identities=23% Similarity=0.272 Sum_probs=104.6
Q ss_pred cc-ccccChhHHHHHHHhh--------------------cccccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccCC--
Q 037859 208 FD-TLAMETKKKEEIKKDL--------------------KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQD-- 264 (504)
Q Consensus 208 f~-~~~~~~~~k~~i~~~l--------------------~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~-- 264 (504)
++ .+++++..|+.+...+ ..++||+||||||||++|+++|..++.+++.++++.+..
T Consensus 69 L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~g 148 (412)
T PRK05342 69 LDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAG 148 (412)
T ss_pred HhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCC
Confidence 44 3678888888664433 256999999999999999999999999999999876532
Q ss_pred ------hHHHHHHHHh------ccCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHH
Q 037859 265 ------NSELRSLLID------TSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGL 332 (504)
Q Consensus 265 ------~~~l~~l~~~------~~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~l 332 (504)
...+..++.. ...++||||||||.+....+.. +...+.....+.+.|
T Consensus 149 yvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~---------------------~~~~d~s~~~vQ~~L 207 (412)
T PRK05342 149 YVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENP---------------------SITRDVSGEGVQQAL 207 (412)
T ss_pred cccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCC---------------------CcCCCcccHHHHHHH
Confidence 1223344332 2368999999999974210000 001112223477889
Q ss_pred hhhhcCcccc---------CCCceEEEEecCCCC----------------------------------------------
Q 037859 333 LNFIDGLWSA---------SGEERIIVFTTNYVD---------------------------------------------- 357 (504)
Q Consensus 333 L~~lDg~~~~---------~~~~~ivI~tTN~~e---------------------------------------------- 357 (504)
|..|||-... ...+.++|+|+|-..
T Consensus 208 L~~Leg~~~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~ 287 (412)
T PRK05342 208 LKILEGTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEP 287 (412)
T ss_pred HHHHhcCeEEeCCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCH
Confidence 9999874210 112346777777511
Q ss_pred ------CCChhhhcCCCceeEEEecCCCHHHHHHHHHH
Q 037859 358 ------KLDPALIRRGRMDKHIEMSYCCFEAFKVLAKN 389 (504)
Q Consensus 358 ------~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~ 389 (504)
.+.|+|+- |+|..+.|...+.+.+..|+..
T Consensus 288 ~dL~~~gf~PEflg--Rld~iv~f~~L~~~~L~~Il~~ 323 (412)
T PRK05342 288 EDLIKFGLIPEFIG--RLPVVATLEELDEEALVRILTE 323 (412)
T ss_pred HHHHHHhhhHHHhC--CCCeeeecCCCCHHHHHHHHHH
Confidence 02344444 8998889988888888888864
No 114
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.39 E-value=4.4e-13 Score=119.74 Aligned_cols=105 Identities=29% Similarity=0.423 Sum_probs=74.8
Q ss_pred cccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccCChHHHHHHHHh---------------ccCCeEEEEecccccccc
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQDNSELRSLLID---------------TSSKSILVIEDIDCSLDL 292 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~~l~~l~~~---------------~~~~~Il~iDeiD~~~~~ 292 (504)
++||+||||||||++|+.+|..++.+++.+.++...+..+|...+.- ...++|++||||+.+
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~~~~il~lDEin~a--- 77 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMRKGGILVLDEINRA--- 77 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHHEEEEEEESSCGG----
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccccceeEEEECCcccC---
Confidence 47999999999999999999999999999999987766665432221 125789999999974
Q ss_pred cccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccc----------cCC-----CceEEEEecCCCC
Q 037859 293 TGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWS----------ASG-----EERIIVFTTNYVD 357 (504)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~----------~~~-----~~~ivI~tTN~~e 357 (504)
...++..|+..+|+-.- ... .+..+|+|+|..+
T Consensus 78 --------------------------------~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~ 125 (139)
T PF07728_consen 78 --------------------------------PPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRD 125 (139)
T ss_dssp ---------------------------------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST
T ss_pred --------------------------------CHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCC
Confidence 12345555555543210 011 1378999999998
Q ss_pred ----CCChhhhcCCCc
Q 037859 358 ----KLDPALIRRGRM 369 (504)
Q Consensus 358 ----~Ld~ALlRpGR~ 369 (504)
.+++||+| ||
T Consensus 126 ~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 126 KGRKELSPALLD--RF 139 (139)
T ss_dssp --TTTTCHHHHT--T-
T ss_pred CCcCcCCHHHHh--hC
Confidence 89999999 87
No 115
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.39 E-value=1.9e-12 Score=143.89 Aligned_cols=144 Identities=22% Similarity=0.336 Sum_probs=102.8
Q ss_pred CCccccccccChhHHH---HHHHhh----cccccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccCChHHHHHHHHh--
Q 037859 204 HPATFDTLAMETKKKE---EIKKDL----KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQDNSELRSLLID-- 274 (504)
Q Consensus 204 ~p~~f~~~~~~~~~k~---~i~~~l----~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~~l~~l~~~-- 274 (504)
+|.+|+++++++.... .+...+ ...+|||||||||||++|+++|+.++.+++.+++.... ..+++..+..
T Consensus 23 RP~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~~-i~dir~~i~~a~ 101 (725)
T PRK13341 23 RPRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLAG-VKDLRAEVDRAK 101 (725)
T ss_pred CCCcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhhh-hHHHHHHHHHHH
Confidence 4899999999887653 233333 33589999999999999999999999888888765322 2233333322
Q ss_pred -----ccCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccCCCceEE
Q 037859 275 -----TSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERII 349 (504)
Q Consensus 275 -----~~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~~~~iv 349 (504)
...+.||||||||.+- ......|+..++. +.+++
T Consensus 102 ~~l~~~~~~~IL~IDEIh~Ln-----------------------------------~~qQdaLL~~lE~------g~IiL 140 (725)
T PRK13341 102 ERLERHGKRTILFIDEVHRFN-----------------------------------KAQQDALLPWVEN------GTITL 140 (725)
T ss_pred HHhhhcCCceEEEEeChhhCC-----------------------------------HHHHHHHHHHhcC------ceEEE
Confidence 2356799999999861 1123456665542 33667
Q ss_pred EEec--CCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcC
Q 037859 350 VFTT--NYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLD 392 (504)
Q Consensus 350 I~tT--N~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~ 392 (504)
|++| |....++++|++ |+ ..+.|+.++.+++..++++++.
T Consensus 141 I~aTTenp~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~ 182 (725)
T PRK13341 141 IGATTENPYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQ 182 (725)
T ss_pred EEecCCChHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHH
Confidence 7655 444578999999 65 4689999999999999988774
No 116
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.39 E-value=4.8e-12 Score=142.53 Aligned_cols=146 Identities=16% Similarity=0.311 Sum_probs=108.0
Q ss_pred cccccChhHHHHHHHhh------------ccc-ccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccCChH---------
Q 037859 209 DTLAMETKKKEEIKKDL------------KKG-YLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQDNS--------- 266 (504)
Q Consensus 209 ~~~~~~~~~k~~i~~~l------------~rg-~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~--------- 266 (504)
+.+.++++.++.|...+ |.| +||+||||||||.+|+++|..++.+++.++++......
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~ 533 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAP 533 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCC
Confidence 35677887777777766 333 78999999999999999999999999999987653211
Q ss_pred ----------HHHHHHHhccCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhh
Q 037859 267 ----------ELRSLLIDTSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFI 336 (504)
Q Consensus 267 ----------~l~~l~~~~~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~l 336 (504)
.+...+. ....+||+|||||.+ .....+.||..|
T Consensus 534 ~gyvg~~~~~~l~~~~~-~~p~~VvllDEieka-----------------------------------~~~~~~~Ll~~l 577 (731)
T TIGR02639 534 PGYVGFEQGGLLTEAVR-KHPHCVLLLDEIEKA-----------------------------------HPDIYNILLQVM 577 (731)
T ss_pred CCCcccchhhHHHHHHH-hCCCeEEEEechhhc-----------------------------------CHHHHHHHHHhh
Confidence 1222222 235699999999985 223667788888
Q ss_pred cCcccc--C-----CCceEEEEecCCC-------------------------CCCChhhhcCCCceeEEEecCCCHHHHH
Q 037859 337 DGLWSA--S-----GEERIIVFTTNYV-------------------------DKLDPALIRRGRMDKHIEMSYCCFEAFK 384 (504)
Q Consensus 337 Dg~~~~--~-----~~~~ivI~tTN~~-------------------------e~Ld~ALlRpGR~d~~I~~~~p~~e~~~ 384 (504)
|.-.-. . -.+.+||+|||.. ..+.|.|+. |||.+|.|...+.++..
T Consensus 578 d~g~~~d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~ 655 (731)
T TIGR02639 578 DYATLTDNNGRKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLE 655 (731)
T ss_pred ccCeeecCCCcccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHH
Confidence 753211 1 1246899999863 125778887 99999999999999999
Q ss_pred HHHHHhcC
Q 037859 385 VLAKNYLD 392 (504)
Q Consensus 385 ~i~~~~l~ 392 (504)
.|++..+.
T Consensus 656 ~Iv~~~L~ 663 (731)
T TIGR02639 656 KIVQKFVD 663 (731)
T ss_pred HHHHHHHH
Confidence 99998874
No 117
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.39 E-value=1.1e-11 Score=127.17 Aligned_cols=145 Identities=23% Similarity=0.225 Sum_probs=100.1
Q ss_pred cccChhHHHHHHHhh--cccccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccCChHHHH------HHH--Hh----cc
Q 037859 211 LAMETKKKEEIKKDL--KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQDNSELR------SLL--ID----TS 276 (504)
Q Consensus 211 ~~~~~~~k~~i~~~l--~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~~l~------~l~--~~----~~ 276 (504)
+.++++....++..+ .+.+||-||||||||++|+++|..++.+++.+.|..-....++. ... .. .+
T Consensus 26 ~~g~~~~~~~~l~a~~~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~ 105 (329)
T COG0714 26 VVGDEEVIELALLALLAGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVP 105 (329)
T ss_pred eeccHHHHHHHHHHHHcCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEec
Confidence 344666666665555 77799999999999999999999999999999998654333331 111 00 11
Q ss_pred ----CC--eEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCc-------c-cc
Q 037859 277 ----SK--SILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGL-------W-SA 342 (504)
Q Consensus 277 ----~~--~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~-------~-~~ 342 (504)
.. +|+++|||+.. ...+.+.||..|+.. . -.
T Consensus 106 gpl~~~~~~ill~DEInra-----------------------------------~p~~q~aLl~~l~e~~vtv~~~~~~~ 150 (329)
T COG0714 106 GPLFAAVRVILLLDEINRA-----------------------------------PPEVQNALLEALEERQVTVPGLTTIR 150 (329)
T ss_pred CCcccccceEEEEeccccC-----------------------------------CHHHHHHHHHHHhCcEEEECCcCCcC
Confidence 11 39999999974 234677777777641 1 11
Q ss_pred CCCceEEEEecC-----CCCCCChhhhcCCCceeEEEecCC-CHHHHHHHHHHhcC
Q 037859 343 SGEERIIVFTTN-----YVDKLDPALIRRGRMDKHIEMSYC-CFEAFKVLAKNYLD 392 (504)
Q Consensus 343 ~~~~~ivI~tTN-----~~e~Ld~ALlRpGR~d~~I~~~~p-~~e~~~~i~~~~l~ 392 (504)
-....++|+|+| ....|++|+++ ||-..+.++|| ..++...+......
T Consensus 151 ~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~~v~yp~~~~e~~~i~~~~~~ 204 (329)
T COG0714 151 LPPPFIVIATQNPGEYEGTYPLPEALLD--RFLLRIYVDYPDSEEEERIILARVGG 204 (329)
T ss_pred CCCCCEEEEccCccccCCCcCCCHHHHh--hEEEEEecCCCCchHHHHHHHHhCcc
Confidence 224467888889 44568999999 99999999999 55555555555443
No 118
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.38 E-value=5.7e-12 Score=128.07 Aligned_cols=151 Identities=20% Similarity=0.224 Sum_probs=106.3
Q ss_pred ecCCCccccccccChhHHHHHHHhhc----ccccccCCCCCcHHHHHHHHHHhcCC-----cEEEEeccccCChHHHHHH
Q 037859 201 FFEHPATFDTLAMETKKKEEIKKDLK----KGYLLYGPPGTGKSTMIAAMANFLNY-----DVYDLELTTVQDNSELRSL 271 (504)
Q Consensus 201 ~~~~p~~f~~~~~~~~~k~~i~~~l~----rg~LL~GPpGtGKTsla~aiA~~l~~-----~i~~l~~~~~~~~~~l~~l 271 (504)
.-..|.+|+++++.++.++.+...+. ..+|||||||||||++++++++.+.. .++.++.+.......++..
T Consensus 9 ~kyrP~~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~ 88 (319)
T PRK00440 9 EKYRPRTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDERGIDVIRNK 88 (319)
T ss_pred hhhCCCcHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccccchHHHHHH
Confidence 45578999999999999999988883 24899999999999999999998732 3444443332222222222
Q ss_pred H----Hhc----cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccC
Q 037859 272 L----IDT----SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSAS 343 (504)
Q Consensus 272 ~----~~~----~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~ 343 (504)
+ ... ..+.+|+|||+|.+. ......|+..++...
T Consensus 89 i~~~~~~~~~~~~~~~vviiDe~~~l~-----------------------------------~~~~~~L~~~le~~~--- 130 (319)
T PRK00440 89 IKEFARTAPVGGAPFKIIFLDEADNLT-----------------------------------SDAQQALRRTMEMYS--- 130 (319)
T ss_pred HHHHHhcCCCCCCCceEEEEeCcccCC-----------------------------------HHHHHHHHHHHhcCC---
Confidence 2 111 235699999999862 112345666665432
Q ss_pred CCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCc
Q 037859 344 GEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDI 393 (504)
Q Consensus 344 ~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~ 393 (504)
....+|+++|.+..+.+++.+ |+. .++|+.++.++...+++.++..
T Consensus 131 -~~~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~ 176 (319)
T PRK00440 131 -QNTRFILSCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAEN 176 (319)
T ss_pred -CCCeEEEEeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHH
Confidence 235677888888888889988 774 6999999999988888877653
No 119
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.38 E-value=5.3e-12 Score=131.64 Aligned_cols=160 Identities=24% Similarity=0.293 Sum_probs=103.8
Q ss_pred ccc-cccChhHHHHHHHhh----------------------cccccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccCC
Q 037859 208 FDT-LAMETKKKEEIKKDL----------------------KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQD 264 (504)
Q Consensus 208 f~~-~~~~~~~k~~i~~~l----------------------~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~ 264 (504)
++. ++++++.|+.+...+ +..+||+||||||||++|+++|..++.++..++++.+..
T Consensus 75 L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~ 154 (413)
T TIGR00382 75 LDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTE 154 (413)
T ss_pred hcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccc
Confidence 444 467777777665433 235999999999999999999999999999888765421
Q ss_pred --------hHHHHHHHHh------ccCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHH
Q 037859 265 --------NSELRSLLID------TSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLS 330 (504)
Q Consensus 265 --------~~~l~~l~~~------~~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls 330 (504)
...+..++.. ...++||||||||.+.. +++. .+...+.....+.+
T Consensus 155 ~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~---~~~~------------------~s~~~dvsg~~vq~ 213 (413)
T TIGR00382 155 AGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISR---KSEN------------------PSITRDVSGEGVQQ 213 (413)
T ss_pred cccccccHHHHHHHHHHhCcccHHhcccceEEecccchhch---hhcc------------------ccccccccchhHHH
Confidence 1223344332 23678999999998642 1100 00011112234778
Q ss_pred HHhhhhcCcccc---C------CCceEEEEecCCC---------------------------C-----------------
Q 037859 331 GLLNFIDGLWSA---S------GEERIIVFTTNYV---------------------------D----------------- 357 (504)
Q Consensus 331 ~lL~~lDg~~~~---~------~~~~ivI~tTN~~---------------------------e----------------- 357 (504)
.||..|||.... . ..+.++|+|+|-. +
T Consensus 214 ~LL~iLeG~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~ 293 (413)
T TIGR00382 214 ALLKIIEGTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEP 293 (413)
T ss_pred HHHHHhhccceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHH
Confidence 899999876321 1 1345789998861 0
Q ss_pred ------CCChhhhcCCCceeEEEecCCCHHHHHHHHHHh
Q 037859 358 ------KLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNY 390 (504)
Q Consensus 358 ------~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~ 390 (504)
.+.|+|+- |+|..+.|...+.+++..|+..-
T Consensus 294 ~dl~~~g~~PEflg--Rld~Iv~f~pL~~~~L~~Il~~~ 330 (413)
T TIGR00382 294 EDLVKFGLIPEFIG--RLPVIATLEKLDEEALIAILTKP 330 (413)
T ss_pred HHHHHHhhHHHHhC--CCCeEeecCCCCHHHHHHHHHHH
Confidence 02355555 88888888888888888887654
No 120
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.37 E-value=5.4e-12 Score=128.53 Aligned_cols=152 Identities=22% Similarity=0.284 Sum_probs=103.1
Q ss_pred CCccccccccChhHHHHHHHhh--c--ccccccCCCCCcHHHHHHHHHHhc-------CCcEEEE------ecc-----c
Q 037859 204 HPATFDTLAMETKKKEEIKKDL--K--KGYLLYGPPGTGKSTMIAAMANFL-------NYDVYDL------ELT-----T 261 (504)
Q Consensus 204 ~p~~f~~~~~~~~~k~~i~~~l--~--rg~LL~GPpGtGKTsla~aiA~~l-------~~~i~~l------~~~-----~ 261 (504)
.|.+|+.+++++..++.++-.+ + .++||+||||||||++|+++|+.+ +.++-.. ++. .
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 82 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAHVSSTT 82 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCcccccccCCc
Confidence 4677999999999998777544 3 469999999999999999999988 3221110 000 0
Q ss_pred -------------------cCChHHHHHHHHh-----------ccCCeEEEEecccccccccccccccccccccccccCc
Q 037859 262 -------------------VQDNSELRSLLID-----------TSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNP 311 (504)
Q Consensus 262 -------------------~~~~~~l~~l~~~-----------~~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~ 311 (504)
+.+.-.+...+.. .....+||||||+.+
T Consensus 83 ~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl---------------------- 140 (334)
T PRK13407 83 MIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLL---------------------- 140 (334)
T ss_pred ccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhC----------------------
Confidence 0111112222111 124569999999985
Q ss_pred ccccccccCCCcchhhHHHHHhhhhcC---------ccccCCCceEEEEecCCCC-CCChhhhcCCCceeEEEecCCCH-
Q 037859 312 IEKKEKEDGGSKKSKVTLSGLLNFIDG---------LWSASGEERIIVFTTNYVD-KLDPALIRRGRMDKHIEMSYCCF- 380 (504)
Q Consensus 312 ~~~~~~~~~~~~~~~~~ls~lL~~lDg---------~~~~~~~~~ivI~tTN~~e-~Ld~ALlRpGR~d~~I~~~~p~~- 380 (504)
+..+++.|++.|+. .........++|+|+|..+ .++++|+. ||.+.|.+++|..
T Consensus 141 -------------~~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~ 205 (334)
T PRK13407 141 -------------EDHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDV 205 (334)
T ss_pred -------------CHHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcH
Confidence 23466777777742 2111234467888888755 69999999 9999999999977
Q ss_pred HHHHHHHHHhcC
Q 037859 381 EAFKVLAKNYLD 392 (504)
Q Consensus 381 e~~~~i~~~~l~ 392 (504)
+++.+|+++...
T Consensus 206 ~e~~~il~~~~~ 217 (334)
T PRK13407 206 ETRVEVIRRRDA 217 (334)
T ss_pred HHHHHHHHHhhc
Confidence 888899887543
No 121
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.37 E-value=2.3e-11 Score=125.75 Aligned_cols=148 Identities=18% Similarity=0.242 Sum_probs=112.3
Q ss_pred CCCccccccccChhHHHHHHHhh-----cccccccCCCCCcHHHHHHHHHHhcCC-------------------------
Q 037859 203 EHPATFDTLAMETKKKEEIKKDL-----KKGYLLYGPPGTGKSTMIAAMANFLNY------------------------- 252 (504)
Q Consensus 203 ~~p~~f~~~~~~~~~k~~i~~~l-----~rg~LL~GPpGtGKTsla~aiA~~l~~------------------------- 252 (504)
.||+.|+.+++++..++.+...+ +.+|||+||+|+||+++|.++|+.+-+
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c 92 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVA 92 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHH
Confidence 59999999999999999999888 567999999999999999999998732
Q ss_pred ---------cEEEEecc--cc-------CChHHHHHHHHhc------cCCeEEEEecccccccccccccccccccccccc
Q 037859 253 ---------DVYDLELT--TV-------QDNSELRSLLIDT------SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEE 308 (504)
Q Consensus 253 ---------~i~~l~~~--~~-------~~~~~l~~l~~~~------~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~ 308 (504)
+++.+... .. -.-++++.+.... ..+-|++|||+|.+
T Consensus 93 ~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m------------------- 153 (365)
T PRK07471 93 RRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEM------------------- 153 (365)
T ss_pred HHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhc-------------------
Confidence 12222211 10 0124455554332 35679999999985
Q ss_pred cCcccccccccCCCcchhhHHHHHhhhhcCccccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHH
Q 037859 309 KNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAK 388 (504)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~ 388 (504)
+....+.||..++.. ....++|++|+.++.+.|.+++ |+ .+|.|+.++.++...++.
T Consensus 154 ----------------~~~aanaLLK~LEep----p~~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l~~~~i~~~L~ 210 (365)
T PRK07471 154 ----------------NANAANALLKVLEEP----PARSLFLLVSHAPARLLPTIRS--RC-RKLRLRPLAPEDVIDALA 210 (365)
T ss_pred ----------------CHHHHHHHHHHHhcC----CCCeEEEEEECCchhchHHhhc--cc-eEEECCCCCHHHHHHHHH
Confidence 234677888888753 3457888899999999999888 88 689999999999998888
Q ss_pred HhcC
Q 037859 389 NYLD 392 (504)
Q Consensus 389 ~~l~ 392 (504)
....
T Consensus 211 ~~~~ 214 (365)
T PRK07471 211 AAGP 214 (365)
T ss_pred Hhcc
Confidence 7653
No 122
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.36 E-value=3.1e-12 Score=127.16 Aligned_cols=143 Identities=21% Similarity=0.319 Sum_probs=98.4
Q ss_pred CCccccccccChhHH------HHHHHhh-cccccccCCCCCcHHHHHHHHHHhcCCc-EEEEeccccC-ChHHHHHHHHh
Q 037859 204 HPATFDTLAMETKKK------EEIKKDL-KKGYLLYGPPGTGKSTMIAAMANFLNYD-VYDLELTTVQ-DNSELRSLLID 274 (504)
Q Consensus 204 ~p~~f~~~~~~~~~k------~~i~~~l-~rg~LL~GPpGtGKTsla~aiA~~l~~~-i~~l~~~~~~-~~~~l~~l~~~ 274 (504)
+|+++++++++.+.. ..+++.= -..++|+||||||||+||+.||+....+ +..+.++... ...++|.+|.+
T Consensus 133 RPktL~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~t~dvR~ife~ 212 (554)
T KOG2028|consen 133 RPKTLDDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAKTNDVRDIFEQ 212 (554)
T ss_pred CcchHHHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccchHHHHHHHHH
Confidence 577788877776432 2222211 3458999999999999999999987655 3345555544 34678888877
Q ss_pred c-------cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccCCCce
Q 037859 275 T-------SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEER 347 (504)
Q Consensus 275 ~-------~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~~~~ 347 (504)
+ .++.|||||||+.+ ++.....||-.++ .+.+
T Consensus 213 aq~~~~l~krkTilFiDEiHRF-----------------------------------NksQQD~fLP~VE------~G~I 251 (554)
T KOG2028|consen 213 AQNEKSLTKRKTILFIDEIHRF-----------------------------------NKSQQDTFLPHVE------NGDI 251 (554)
T ss_pred HHHHHhhhcceeEEEeHHhhhh-----------------------------------hhhhhhcccceec------cCce
Confidence 5 47899999999985 1112233444432 2457
Q ss_pred EEEEec--CCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHh
Q 037859 348 IIVFTT--NYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNY 390 (504)
Q Consensus 348 ivI~tT--N~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~ 390 (504)
++|++| |..-.|..||+. |+ ..+.+.....+....|+.+-
T Consensus 252 ~lIGATTENPSFqln~aLlS--RC-~VfvLekL~~n~v~~iL~ra 293 (554)
T KOG2028|consen 252 TLIGATTENPSFQLNAALLS--RC-RVFVLEKLPVNAVVTILMRA 293 (554)
T ss_pred EEEecccCCCccchhHHHHh--cc-ceeEeccCCHHHHHHHHHHH
Confidence 888865 566689999999 66 45667777788888887763
No 123
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.36 E-value=6.7e-12 Score=110.99 Aligned_cols=123 Identities=30% Similarity=0.414 Sum_probs=83.6
Q ss_pred HHHHHHHhh----cccccccCCCCCcHHHHHHHHHHhc---CCcEEEEeccccCChHHHH-----------HHHHhccCC
Q 037859 217 KKEEIKKDL----KKGYLLYGPPGTGKSTMIAAMANFL---NYDVYDLELTTVQDNSELR-----------SLLIDTSSK 278 (504)
Q Consensus 217 ~k~~i~~~l----~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~~~~~~l~-----------~l~~~~~~~ 278 (504)
..+.+...+ .+.++++||||||||++++.+++.+ +.+++.+++.......... ........+
T Consensus 6 ~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (151)
T cd00009 6 AIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKP 85 (151)
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCC
Confidence 344444444 4679999999999999999999998 8899999887764332222 112223468
Q ss_pred eEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCcccc--CCCceEEEEecCCC
Q 037859 279 SILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSA--SGEERIIVFTTNYV 356 (504)
Q Consensus 279 ~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~--~~~~~ivI~tTN~~ 356 (504)
.+|+|||++.+. ......++..+...... ...+..+|++||..
T Consensus 86 ~~lilDe~~~~~-----------------------------------~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~ 130 (151)
T cd00009 86 GVLFIDEIDSLS-----------------------------------RGAQNALLRVLETLNDLRIDRENVRVIGATNRP 130 (151)
T ss_pred eEEEEeChhhhh-----------------------------------HHHHHHHHHHHHhcCceeccCCCeEEEEecCcc
Confidence 999999999741 11223444444333211 12457888899887
Q ss_pred C--CCChhhhcCCCceeEEEec
Q 037859 357 D--KLDPALIRRGRMDKHIEMS 376 (504)
Q Consensus 357 e--~Ld~ALlRpGR~d~~I~~~ 376 (504)
. .+++.+.. |++.+|.++
T Consensus 131 ~~~~~~~~~~~--r~~~~i~~~ 150 (151)
T cd00009 131 LLGDLDRALYD--RLDIRIVIP 150 (151)
T ss_pred ccCCcChhHHh--hhccEeecC
Confidence 7 78889888 999888876
No 124
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.36 E-value=2.2e-12 Score=137.68 Aligned_cols=182 Identities=16% Similarity=0.267 Sum_probs=107.0
Q ss_pred ecCCCccccccccChhHH---HHHHHhh------cccccccCCCCCcHHHHHHHHHHhc-----CCcEEEEeccccCCh-
Q 037859 201 FFEHPATFDTLAMETKKK---EEIKKDL------KKGYLLYGPPGTGKSTMIAAMANFL-----NYDVYDLELTTVQDN- 265 (504)
Q Consensus 201 ~~~~p~~f~~~~~~~~~k---~~i~~~l------~rg~LL~GPpGtGKTsla~aiA~~l-----~~~i~~l~~~~~~~~- 265 (504)
++....+|++++..+.-+ ....... .++++||||||||||+|++|+|+++ +..++++++..+...
T Consensus 114 ~l~~~~tfd~fv~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~ 193 (450)
T PRK00149 114 PLNPKYTFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDF 193 (450)
T ss_pred CCCCCCcccccccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHH
Confidence 455556788865433222 1111111 2458999999999999999999987 556888877654210
Q ss_pred -H-----HHHHHHHhccCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCc
Q 037859 266 -S-----ELRSLLIDTSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGL 339 (504)
Q Consensus 266 -~-----~l~~l~~~~~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~ 339 (504)
. ....+........+|+|||||.+. +++ .+...|+..++.+
T Consensus 194 ~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~---~~~------------------------------~~~~~l~~~~n~l 240 (450)
T PRK00149 194 VNALRNNTMEEFKEKYRSVDVLLIDDIQFLA---GKE------------------------------RTQEEFFHTFNAL 240 (450)
T ss_pred HHHHHcCcHHHHHHHHhcCCEEEEehhhhhc---CCH------------------------------HHHHHHHHHHHHH
Confidence 0 111222233467799999999852 111 1223444444444
Q ss_pred cccCCCceEEEEecCCCCC---CChhhhcCCCce--eEEEecCCCHHHHHHHHHHhcCcCCcchHH-HHhcCccCCCCCH
Q 037859 340 WSASGEERIIVFTTNYVDK---LDPALIRRGRMD--KHIEMSYCCFEAFKVLAKNYLDIDSHELYA-VIESMPAETNMTP 413 (504)
Q Consensus 340 ~~~~~~~~ivI~tTN~~e~---Ld~ALlRpGR~d--~~I~~~~p~~e~~~~i~~~~l~~~~~~~~~-~i~~l~~~~~~s~ 413 (504)
... +..+||.++..+.. ++++|.. ||. ..+++..|+.+++..|++.........+.+ .++.++....=+.
T Consensus 241 ~~~--~~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~ 316 (450)
T PRK00149 241 HEA--GKQIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITSNV 316 (450)
T ss_pred HHC--CCcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCCCH
Confidence 321 22344444444443 7799998 885 689999999999999999887543222222 2344444444445
Q ss_pred HHHHHh
Q 037859 414 ADVAEN 419 (504)
Q Consensus 414 a~i~~~ 419 (504)
+++.+.
T Consensus 317 R~l~~~ 322 (450)
T PRK00149 317 RELEGA 322 (450)
T ss_pred HHHHHH
Confidence 554443
No 125
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.36 E-value=4.5e-12 Score=122.89 Aligned_cols=146 Identities=13% Similarity=0.140 Sum_probs=92.2
Q ss_pred ecCCCccccccccC--hhHHHHHHHhh-----cccccccCCCCCcHHHHHHHHHHhc---CCcEEEEeccccCChHHHHH
Q 037859 201 FFEHPATFDTLAME--TKKKEEIKKDL-----KKGYLLYGPPGTGKSTMIAAMANFL---NYDVYDLELTTVQDNSELRS 270 (504)
Q Consensus 201 ~~~~p~~f~~~~~~--~~~k~~i~~~l-----~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~~~~~~l~~ 270 (504)
|...|.+|+++... ......+.... .++++|+||||||||+|++++++++ +.+++.+++.....
T Consensus 10 ~~~~~~~~d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~------ 83 (227)
T PRK08903 10 GPPPPPTFDNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLL------ 83 (227)
T ss_pred CCCChhhhcccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHH------
Confidence 45556678887633 23333332222 4579999999999999999999875 66788887765421
Q ss_pred HHHhccCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccCCCceEEE
Q 037859 271 LLIDTSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERIIV 350 (504)
Q Consensus 271 l~~~~~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~~~~ivI 350 (504)
.+.......+|+|||+|.+- .. ....|+..++.... .+..++|
T Consensus 84 ~~~~~~~~~~liiDdi~~l~--------------------------------~~---~~~~L~~~~~~~~~--~~~~~vl 126 (227)
T PRK08903 84 AFDFDPEAELYAVDDVERLD--------------------------------DA---QQIALFNLFNRVRA--HGQGALL 126 (227)
T ss_pred HHhhcccCCEEEEeChhhcC--------------------------------ch---HHHHHHHHHHHHHH--cCCcEEE
Confidence 12233456799999999851 01 12233444433321 2234566
Q ss_pred EecCCCC---CCChhhhcCCCc--eeEEEecCCCHHHHHHHHHHhc
Q 037859 351 FTTNYVD---KLDPALIRRGRM--DKHIEMSYCCFEAFKVLAKNYL 391 (504)
Q Consensus 351 ~tTN~~e---~Ld~ALlRpGR~--d~~I~~~~p~~e~~~~i~~~~l 391 (504)
+|++.+. .+.+.|.. |+ ...|+++.|+.+....++..+.
T Consensus 127 ~~~~~~~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~ 170 (227)
T PRK08903 127 VAGPAAPLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAA 170 (227)
T ss_pred EeCCCCHHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHH
Confidence 6665432 35678887 66 4799999999988777776543
No 126
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.36 E-value=3.2e-11 Score=122.79 Aligned_cols=143 Identities=14% Similarity=0.246 Sum_probs=108.6
Q ss_pred cccccccChhHHHHHHHhh-----cccccccCCCCCcHHHHHHHHHHhcCC--------cEEEEec-ccc-CChHHHHHH
Q 037859 207 TFDTLAMETKKKEEIKKDL-----KKGYLLYGPPGTGKSTMIAAMANFLNY--------DVYDLEL-TTV-QDNSELRSL 271 (504)
Q Consensus 207 ~f~~~~~~~~~k~~i~~~l-----~rg~LL~GPpGtGKTsla~aiA~~l~~--------~i~~l~~-~~~-~~~~~l~~l 271 (504)
+|+++++++..++.+...+ +..||||||+|+|||++|+++|..+.+ +++.+.. ... ...+.++.+
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir~~ 81 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIRNI 81 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHHHH
Confidence 5888999999999988887 667999999999999999999997733 3334433 111 133567766
Q ss_pred HHhc------cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccCCC
Q 037859 272 LIDT------SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGE 345 (504)
Q Consensus 272 ~~~~------~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~~ 345 (504)
.... ...-|++|||+|.+ +....+.||..|+.. ++
T Consensus 82 ~~~~~~~p~~~~~kv~iI~~ad~m-----------------------------------~~~a~naLLK~LEep----p~ 122 (313)
T PRK05564 82 IEEVNKKPYEGDKKVIIIYNSEKM-----------------------------------TEQAQNAFLKTIEEP----PK 122 (313)
T ss_pred HHHHhcCcccCCceEEEEechhhc-----------------------------------CHHHHHHHHHHhcCC----CC
Confidence 6533 25679999999985 223567889988853 35
Q ss_pred ceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhc
Q 037859 346 ERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYL 391 (504)
Q Consensus 346 ~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l 391 (504)
+.++|++|+.++.|.|++.. |+ .+++|..|+.++....+...+
T Consensus 123 ~t~~il~~~~~~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~l~~~~ 165 (313)
T PRK05564 123 GVFIILLCENLEQILDTIKS--RC-QIYKLNRLSKEEIEKFISYKY 165 (313)
T ss_pred CeEEEEEeCChHhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHHh
Confidence 57888888889999999999 87 589999999998887776554
No 127
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=1.4e-12 Score=143.33 Aligned_cols=178 Identities=20% Similarity=0.359 Sum_probs=121.1
Q ss_pred cccccccChhHHHHHHHhh----cccccccCCCCCcHHHHHHHHHHhc----------CCcEEEEeccccCCh-------
Q 037859 207 TFDTLAMETKKKEEIKKDL----KKGYLLYGPPGTGKSTMIAAMANFL----------NYDVYDLELTTVQDN------- 265 (504)
Q Consensus 207 ~f~~~~~~~~~k~~i~~~l----~rg~LL~GPpGtGKTsla~aiA~~l----------~~~i~~l~~~~~~~~------- 265 (504)
.++-|++.++..+++++.| ++.-+|.|+||+|||.++..+|... +..++.+|++.+..+
T Consensus 168 klDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGeF 247 (786)
T COG0542 168 KLDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGEF 247 (786)
T ss_pred CCCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccccccCcH
Confidence 4778899999999999998 6779999999999999999999865 678999999887433
Q ss_pred -HHHHHHHHhcc--CCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCcccc
Q 037859 266 -SELRSLLIDTS--SKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSA 342 (504)
Q Consensus 266 -~~l~~l~~~~~--~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~ 342 (504)
++|+.++.+.. .+.||||||||.+.. ... ..+ . ..-.+.+|... .
T Consensus 248 EeRlk~vl~ev~~~~~vILFIDEiHtiVG---AG~---------------------~~G--~-a~DAaNiLKPa-----L 295 (786)
T COG0542 248 EERLKAVLKEVEKSKNVILFIDEIHTIVG---AGA---------------------TEG--G-AMDAANLLKPA-----L 295 (786)
T ss_pred HHHHHHHHHHHhcCCCeEEEEechhhhcC---CCc---------------------ccc--c-ccchhhhhHHH-----H
Confidence 45666665542 489999999999753 210 001 1 22344455432 2
Q ss_pred CCCceEEEEecC------CCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCc--CCcc--hHHHHhcCccCCCCC
Q 037859 343 SGEERIIVFTTN------YVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDI--DSHE--LYAVIESMPAETNMT 412 (504)
Q Consensus 343 ~~~~~ivI~tTN------~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~--~~~~--~~~~i~~l~~~~~~s 412 (504)
..++.-+|++|. +.++ |+||-| || ..|.+..|+.++-..|++..-.. .+|. ..+ +.+.....+|
T Consensus 296 ARGeL~~IGATT~~EYRk~iEK-D~AL~R--RF-Q~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D--~Al~aAv~LS 369 (786)
T COG0542 296 ARGELRCIGATTLDEYRKYIEK-DAALER--RF-QKVLVDEPSVEDTIAILRGLKERYEAHHGVRITD--EALVAAVTLS 369 (786)
T ss_pred hcCCeEEEEeccHHHHHHHhhh-chHHHh--cC-ceeeCCCCCHHHHHHHHHHHHHHHHHccCceecH--HHHHHHHHHH
Confidence 234556666553 5555 999999 99 68999999999888888754321 1122 122 2222234566
Q ss_pred HHHHHHhhCC
Q 037859 413 PADVAENLMP 422 (504)
Q Consensus 413 ~a~i~~~l~~ 422 (504)
..+|.+..+|
T Consensus 370 ~RYI~dR~LP 379 (786)
T COG0542 370 DRYIPDRFLP 379 (786)
T ss_pred HhhcccCCCC
Confidence 6677666665
No 128
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=4.1e-12 Score=137.25 Aligned_cols=182 Identities=27% Similarity=0.369 Sum_probs=132.2
Q ss_pred ecCCCccccccccChhHHHHHHHhhcccccccCCCCCcHHHHHHHHHHhcCCcEEEEecccc------CChHHHHHHHHh
Q 037859 201 FFEHPATFDTLAMETKKKEEIKKDLKKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTV------QDNSELRSLLID 274 (504)
Q Consensus 201 ~~~~p~~f~~~~~~~~~k~~i~~~l~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~------~~~~~l~~l~~~ 274 (504)
|..+|..|..+...+ ++|++++||||||||++++++|+. +.....++.... ....+++.+|..
T Consensus 3 ~~~~~~~~~~~~~~~----------~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (494)
T COG0464 3 PLKEPELFKKLGIEP----------PKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEE 71 (494)
T ss_pred CccCHHHHHHhCCCC----------CCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHH
Confidence 567777788888887 899999999999999999999999 444443433332 123556667766
Q ss_pred cc--CCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccCCCceEEEEe
Q 037859 275 TS--SKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERIIVFT 352 (504)
Q Consensus 275 ~~--~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~~~~ivI~t 352 (504)
+. .|+|+++||+|.+.+.... .........+++++..+|++. .+. ++++..
T Consensus 72 a~~~~~~ii~~d~~~~~~~~~~~------------------------~~~~~~~~v~~~l~~~~d~~~--~~~-v~~~~~ 124 (494)
T COG0464 72 AEKLAPSIIFIDEIDALAPKRSS------------------------DQGEVERRVVAQLLALMDGLK--RGQ-VIVIGA 124 (494)
T ss_pred HHHhCCCeEeechhhhcccCccc------------------------cccchhhHHHHHHHHhccccc--CCc-eEEEee
Confidence 53 5799999999997532221 123445678999999999996 445 888889
Q ss_pred cCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCcCCcchHHHHhcCcc-CCCCCHHHHHHhh
Q 037859 353 TNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDIDSHELYAVIESMPA-ETNMTPADVAENL 420 (504)
Q Consensus 353 TN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~~~~~~~~~i~~l~~-~~~~s~a~i~~~l 420 (504)
||.+..+|+++.+||||+..+.+..|+...+..+..................++. ..+++.+++..++
T Consensus 125 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~ 193 (494)
T COG0464 125 TNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEILQIHTRLMFLGPPGTGKTLAARTVGKSGADLGALA 193 (494)
T ss_pred cCCccccChhHhCccccceeeecCCCCHHHHHHHHHHHHhcCCCcccccHHHHHHhcCCccHHHHHHHH
Confidence 9999999999999999999999999999988887776543211111111222333 3478888887665
No 129
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.34 E-value=3.2e-12 Score=134.69 Aligned_cols=155 Identities=18% Similarity=0.277 Sum_probs=94.9
Q ss_pred ccccccCCCCCcHHHHHHHHHHhc-----CCcEEEEeccccCCh-------HHHHHHHHhccCCeEEEEecccccccccc
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANFL-----NYDVYDLELTTVQDN-------SELRSLLIDTSSKSILVIEDIDCSLDLTG 294 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~l-----~~~i~~l~~~~~~~~-------~~l~~l~~~~~~~~Il~iDeiD~~~~~~~ 294 (504)
.+++||||||||||+|++|+|+++ +..++++++..+... ..+...........+|+|||||.+. +
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~---~ 213 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQFLA---G 213 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHHhCCEEEEehhhhhc---C
Confidence 458999999999999999999987 567888876543110 0111111222346799999999852 1
Q ss_pred cccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccCCCceEEEEecC-CCC---CCChhhhcCCCce
Q 037859 295 QREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERIIVFTTN-YVD---KLDPALIRRGRMD 370 (504)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~~~~ivI~tTN-~~e---~Ld~ALlRpGR~d 370 (504)
.. .+...|+..++.+... + ..+|+|+| .+. .+++.|.. ||.
T Consensus 214 ~~------------------------------~~~~~l~~~~n~~~~~--~-~~iiits~~~p~~l~~l~~~l~S--Rl~ 258 (405)
T TIGR00362 214 KE------------------------------RTQEEFFHTFNALHEN--G-KQIVLTSDRPPKELPGLEERLRS--RFE 258 (405)
T ss_pred CH------------------------------HHHHHHHHHHHHHHHC--C-CCEEEecCCCHHHHhhhhhhhhh--hcc
Confidence 10 1223344444443221 2 23445554 444 46788998 885
Q ss_pred --eEEEecCCCHHHHHHHHHHhcCcCCcchHH-HHhcCccCCCCCHHHHHHh
Q 037859 371 --KHIEMSYCCFEAFKVLAKNYLDIDSHELYA-VIESMPAETNMTPADVAEN 419 (504)
Q Consensus 371 --~~I~~~~p~~e~~~~i~~~~l~~~~~~~~~-~i~~l~~~~~~s~a~i~~~ 419 (504)
..+.++.|+.++|..|++..+......+.+ .++.++....-+.+++.+.
T Consensus 259 ~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~r~l~~~ 310 (405)
T TIGR00362 259 WGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRSNVRELEGA 310 (405)
T ss_pred CCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHH
Confidence 579999999999999999887543333222 2344444444455555443
No 130
>PRK08727 hypothetical protein; Validated
Probab=99.33 E-value=1.3e-11 Score=120.40 Aligned_cols=151 Identities=20% Similarity=0.243 Sum_probs=98.1
Q ss_pred ecCCCccccccccChhHHHHHHHhh-----cccccccCCCCCcHHHHHHHHHHhc---CCcEEEEeccccCChHHHHHHH
Q 037859 201 FFEHPATFDTLAMETKKKEEIKKDL-----KKGYLLYGPPGTGKSTMIAAMANFL---NYDVYDLELTTVQDNSELRSLL 272 (504)
Q Consensus 201 ~~~~p~~f~~~~~~~~~k~~i~~~l-----~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~~~~~~l~~l~ 272 (504)
++....+|++++..+.-.-..+..+ ...++||||+|||||+|+.|+++++ +..+.++++.... ..+...+
T Consensus 11 ~~~~~~~f~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~--~~~~~~~ 88 (233)
T PRK08727 11 RYPSDQRFDSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAA--GRLRDAL 88 (233)
T ss_pred CCCCcCChhhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhh--hhHHHHH
Confidence 3444457888876664322222222 3458999999999999999997765 5666677655432 3345556
Q ss_pred HhccCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccCCCceEEEEe
Q 037859 273 IDTSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERIIVFT 352 (504)
Q Consensus 273 ~~~~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~~~~ivI~t 352 (504)
....+..+|+|||||.+. +. ......+-.++|.+-. . +.-+|+|
T Consensus 89 ~~l~~~dlLiIDDi~~l~---~~---------------------------~~~~~~lf~l~n~~~~-----~-~~~vI~t 132 (233)
T PRK08727 89 EALEGRSLVALDGLESIA---GQ---------------------------REDEVALFDFHNRARA-----A-GITLLYT 132 (233)
T ss_pred HHHhcCCEEEEeCccccc---CC---------------------------hHHHHHHHHHHHHHHH-----c-CCeEEEE
Confidence 666677899999999852 11 1122234445554321 1 2335555
Q ss_pred cC-CCCCC---ChhhhcCCCc--eeEEEecCCCHHHHHHHHHHhc
Q 037859 353 TN-YVDKL---DPALIRRGRM--DKHIEMSYCCFEAFKVLAKNYL 391 (504)
Q Consensus 353 TN-~~e~L---d~ALlRpGR~--d~~I~~~~p~~e~~~~i~~~~l 391 (504)
+| .+..+ +|+|.+ || ..++.++.|+.+++..+++...
T Consensus 133 s~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a 175 (233)
T PRK08727 133 ARQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERA 175 (233)
T ss_pred CCCChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHH
Confidence 55 56544 799999 85 5789999999999999998754
No 131
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.33 E-value=1.6e-11 Score=115.52 Aligned_cols=123 Identities=23% Similarity=0.291 Sum_probs=90.3
Q ss_pred cccccccCCCCCcHHHHHHHHHHhcCC------------------------cEEEEecccc-CChHHHHHHHHhc-----
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFLNY------------------------DVYDLELTTV-QDNSELRSLLIDT----- 275 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l~~------------------------~i~~l~~~~~-~~~~~l~~l~~~~----- 275 (504)
+..||||||||+|||++++++|+.+.. ++..+..... ...+.++.+....
T Consensus 14 ~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~~~~~ 93 (188)
T TIGR00678 14 AHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVRELVEFLSRTPQ 93 (188)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHHHHHHHHccCcc
Confidence 667999999999999999999998743 2333333221 1235565555443
Q ss_pred -cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccCCCceEEEEecC
Q 037859 276 -SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERIIVFTTN 354 (504)
Q Consensus 276 -~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~~~~ivI~tTN 354 (504)
..+.|++|||+|.+- ....+.||..|+.. +...++|++||
T Consensus 94 ~~~~kviiide~~~l~-----------------------------------~~~~~~Ll~~le~~----~~~~~~il~~~ 134 (188)
T TIGR00678 94 ESGRRVVIIEDAERMN-----------------------------------EAAANALLKTLEEP----PPNTLFILITP 134 (188)
T ss_pred cCCeEEEEEechhhhC-----------------------------------HHHHHHHHHHhcCC----CCCeEEEEEEC
Confidence 246799999999861 22456788888753 24467888888
Q ss_pred CCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHh
Q 037859 355 YVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNY 390 (504)
Q Consensus 355 ~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~ 390 (504)
.+..|.+++.+ |+ ..+++..|+.++...+++..
T Consensus 135 ~~~~l~~~i~s--r~-~~~~~~~~~~~~~~~~l~~~ 167 (188)
T TIGR00678 135 SPEKLLPTIRS--RC-QVLPFPPLSEEALLQWLIRQ 167 (188)
T ss_pred ChHhChHHHHh--hc-EEeeCCCCCHHHHHHHHHHc
Confidence 88999999999 77 58999999999988877665
No 132
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.33 E-value=3.3e-11 Score=123.93 Aligned_cols=146 Identities=16% Similarity=0.233 Sum_probs=108.2
Q ss_pred CCCccccccccChhHHHHHHHhh-----cccccccCCCCCcHHHHHHHHHHhcCCc------------------------
Q 037859 203 EHPATFDTLAMETKKKEEIKKDL-----KKGYLLYGPPGTGKSTMIAAMANFLNYD------------------------ 253 (504)
Q Consensus 203 ~~p~~f~~~~~~~~~k~~i~~~l-----~rg~LL~GPpGtGKTsla~aiA~~l~~~------------------------ 253 (504)
.||+.|+.++++.+.++.+...+ +.++||+||+|+|||++|+++|+.+.+.
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i~ 96 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQIA 96 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHHH
Confidence 59999999999999999999988 4469999999999999999999988541
Q ss_pred ------EEEEecc--c-------cCChHHHHHHH---Hhc---cCCeEEEEecccccccccccccccccccccccccCcc
Q 037859 254 ------VYDLELT--T-------VQDNSELRSLL---IDT---SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPI 312 (504)
Q Consensus 254 ------i~~l~~~--~-------~~~~~~l~~l~---~~~---~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (504)
++.+... . .-..+.++.+. ... ...-|++|||+|.+
T Consensus 97 ~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l----------------------- 153 (351)
T PRK09112 97 QGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDM----------------------- 153 (351)
T ss_pred cCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhc-----------------------
Confidence 1112110 0 00123444433 222 24579999999986
Q ss_pred cccccccCCCcchhhHHHHHhhhhcCccccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHh
Q 037859 313 EKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNY 390 (504)
Q Consensus 313 ~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~ 390 (504)
+....+.||..++.. ....++|+.|+.++.+.|.++. |+ .++.|+.++.++...++...
T Consensus 154 ------------~~~aanaLLk~LEEp----p~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~ 212 (351)
T PRK09112 154 ------------NRNAANAILKTLEEP----PARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHL 212 (351)
T ss_pred ------------CHHHHHHHHHHHhcC----CCCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHh
Confidence 233567788888763 2346777778889999999988 88 69999999999999888874
No 133
>PHA02244 ATPase-like protein
Probab=99.33 E-value=2.3e-11 Score=123.85 Aligned_cols=116 Identities=22% Similarity=0.310 Sum_probs=79.8
Q ss_pred cccccccCCCCCcHHHHHHHHHHhcCCcEEEEeccc----c----CChHHHH--HHHHhccCCeEEEEeccccccccccc
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTT----V----QDNSELR--SLLIDTSSKSILVIEDIDCSLDLTGQ 295 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~----~----~~~~~l~--~l~~~~~~~~Il~iDeiD~~~~~~~~ 295 (504)
+..+||+||||||||++|++||..++.+++.++... + .....+. .++.......+++|||||.+-
T Consensus 119 ~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~~~GgvLiLDEId~a~----- 193 (383)
T PHA02244 119 NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAFKKGGLFFIDEIDASI----- 193 (383)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHhhcCCEEEEeCcCcCC-----
Confidence 677999999999999999999999999999886321 0 0000111 233334577899999999751
Q ss_pred ccccccccccccccCcccccccccCCCcchhhHHHHHhhhhc--------CccccCCCceEEEEecCCC-----------
Q 037859 296 REKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFID--------GLWSASGEERIIVFTTNYV----------- 356 (504)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lD--------g~~~~~~~~~ivI~tTN~~----------- 356 (504)
..++..|+..+| +.. ....+..+|+|+|..
T Consensus 194 ------------------------------p~vq~~L~~lLd~r~l~l~g~~i-~~h~~FRlIATsN~~~~G~~~~y~G~ 242 (383)
T PHA02244 194 ------------------------------PEALIIINSAIANKFFDFADERV-TAHEDFRVISAGNTLGKGADHIYVAR 242 (383)
T ss_pred ------------------------------HHHHHHHHHHhccCeEEecCcEE-ecCCCEEEEEeeCCCccCcccccCCC
Confidence 112333333332 221 123456899999973
Q ss_pred CCCChhhhcCCCceeEEEecCCCH
Q 037859 357 DKLDPALIRRGRMDKHIEMSYCCF 380 (504)
Q Consensus 357 e~Ld~ALlRpGR~d~~I~~~~p~~ 380 (504)
..|++|++. || .+|+|+||+.
T Consensus 243 k~L~~AllD--RF-v~I~~dyp~~ 263 (383)
T PHA02244 243 NKIDGATLD--RF-APIEFDYDEK 263 (383)
T ss_pred cccCHHHHh--hc-EEeeCCCCcH
Confidence 578999999 99 6899999984
No 134
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.32 E-value=1.8e-11 Score=127.09 Aligned_cols=149 Identities=18% Similarity=0.242 Sum_probs=102.0
Q ss_pred cccccChhHHHHHHHhh--------cccccccCCCCCcHHHHHHHHHHhcC---------CcEEEEeccccCChHH----
Q 037859 209 DTLAMETKKKEEIKKDL--------KKGYLLYGPPGTGKSTMIAAMANFLN---------YDVYDLELTTVQDNSE---- 267 (504)
Q Consensus 209 ~~~~~~~~~k~~i~~~l--------~rg~LL~GPpGtGKTsla~aiA~~l~---------~~i~~l~~~~~~~~~~---- 267 (504)
+.+.+.++..+.|...+ +..+++|||||||||++++++++.+. ..++.+++....+...
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~ 94 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVE 94 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHH
Confidence 45677788787777776 35699999999999999999998763 4677788765432111
Q ss_pred ----------------------HHHHHH---hccCCeEEEEecccccccccccccccccccccccccCcccccccccCCC
Q 037859 268 ----------------------LRSLLI---DTSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGS 322 (504)
Q Consensus 268 ----------------------l~~l~~---~~~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (504)
+..++. ....+.||+|||+|.+.. .
T Consensus 95 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~---~--------------------------- 144 (365)
T TIGR02928 95 LANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVG---D--------------------------- 144 (365)
T ss_pred HHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhcc---C---------------------------
Confidence 111111 224568999999999741 0
Q ss_pred cchhhHHHHHhhhhcCccccCCCceEEEEecCCCC---CCChhhhcCCCce-eEEEecCCCHHHHHHHHHHhcC
Q 037859 323 KKSKVTLSGLLNFIDGLWSASGEERIIVFTTNYVD---KLDPALIRRGRMD-KHIEMSYCCFEAFKVLAKNYLD 392 (504)
Q Consensus 323 ~~~~~~ls~lL~~lDg~~~~~~~~~ivI~tTN~~e---~Ld~ALlRpGR~d-~~I~~~~p~~e~~~~i~~~~l~ 392 (504)
....+..|+...+-. ...+..+.+|+++|.++ .+++.+.+ ||. ..|+|+.++.+++..|++..+.
T Consensus 145 --~~~~L~~l~~~~~~~-~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~ 213 (365)
T TIGR02928 145 --DDDLLYQLSRARSNG-DLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAE 213 (365)
T ss_pred --CcHHHHhHhcccccc-CCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHH
Confidence 112445555442111 11224578889998875 58889888 774 6799999999999999988764
No 135
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.31 E-value=2.5e-11 Score=124.05 Aligned_cols=150 Identities=19% Similarity=0.289 Sum_probs=102.6
Q ss_pred ccccccccChhHHHHHHHhh----cccccccCCCCCcHHHHHHHHHHhcCC-------cEE-------------------
Q 037859 206 ATFDTLAMETKKKEEIKKDL----KKGYLLYGPPGTGKSTMIAAMANFLNY-------DVY------------------- 255 (504)
Q Consensus 206 ~~f~~~~~~~~~k~~i~~~l----~rg~LL~GPpGtGKTsla~aiA~~l~~-------~i~------------------- 255 (504)
-+|+.++++++.|..++..+ ..|+||.||+|||||+++++++..+.. ++.
T Consensus 14 ~pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~p~~~~~~~~~~~~~ 93 (350)
T CHL00081 14 FPFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSDPELMSDEVREAIQN 93 (350)
T ss_pred CCHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCChhhhchhhhhhhcc
Confidence 46999999999999998887 467999999999999999999887631 111
Q ss_pred ---------EEecccc---CChH------HHHHHHHh-----------ccCCeEEEEecccccccccccccccccccccc
Q 037859 256 ---------DLELTTV---QDNS------ELRSLLID-----------TSSKSILVIEDIDCSLDLTGQREKKKEKDEDK 306 (504)
Q Consensus 256 ---------~l~~~~~---~~~~------~l~~l~~~-----------~~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~ 306 (504)
.+.+..+ .+.+ ++.+.|.. .....+||+|||+.+
T Consensus 94 ~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL----------------- 156 (350)
T CHL00081 94 GETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLL----------------- 156 (350)
T ss_pred cccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhC-----------------
Confidence 0000000 0111 12222221 234689999999985
Q ss_pred cccCcccccccccCCCcchhhHHHHHhhhhc---------CccccCCCceEEEEecCCCC-CCChhhhcCCCceeEEEec
Q 037859 307 EEKNPIEKKEKEDGGSKKSKVTLSGLLNFID---------GLWSASGEERIIVFTTNYVD-KLDPALIRRGRMDKHIEMS 376 (504)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lD---------g~~~~~~~~~ivI~tTN~~e-~Ld~ALlRpGR~d~~I~~~ 376 (504)
+..+.+.||+.|+ |.........++|+|.|..+ .++++|+. ||.++|.++
T Consensus 157 ------------------~~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~ 216 (350)
T CHL00081 157 ------------------DDHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIR 216 (350)
T ss_pred ------------------CHHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecC
Confidence 2335666777764 22211223456777778665 69999999 999999999
Q ss_pred CCC-HHHHHHHHHHhcC
Q 037859 377 YCC-FEAFKVLAKNYLD 392 (504)
Q Consensus 377 ~p~-~e~~~~i~~~~l~ 392 (504)
+|+ .+.+.+|+++...
T Consensus 217 ~~~~~~~e~~il~~~~~ 233 (350)
T CHL00081 217 TVKDPELRVKIVEQRTS 233 (350)
T ss_pred CCCChHHHHHHHHhhhc
Confidence 997 5899999987643
No 136
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.30 E-value=3.1e-11 Score=114.32 Aligned_cols=160 Identities=19% Similarity=0.281 Sum_probs=126.7
Q ss_pred eeecCCCccccccccChhHHHHHHHhh--------cccccccCCCCCcHHHHHHHHHHhc---CCcEEEEeccccCChHH
Q 037859 199 HVFFEHPATFDTLAMETKKKEEIKKDL--------KKGYLLYGPPGTGKSTMIAAMANFL---NYDVYDLELTTVQDNSE 267 (504)
Q Consensus 199 ~~~~~~p~~f~~~~~~~~~k~~i~~~l--------~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~~~~~~ 267 (504)
.+|-.+|..+..+++-+.+|+.+++.- ...+||+|.-|||||||++|+-+++ +..++.++-..+.+-..
T Consensus 50 pv~~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~~Lp~ 129 (287)
T COG2607 50 PVPDPDPIDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLATLPD 129 (287)
T ss_pred CCCCCCCcCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHhhHHH
Confidence 355556677889999999999888765 5679999999999999999998877 56788888777777788
Q ss_pred HHHHHHhccCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccCCCce
Q 037859 268 LRSLLIDTSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEER 347 (504)
Q Consensus 268 l~~l~~~~~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~~~~ 347 (504)
|..++...+.+-|||+||+-- + ........|-..|||--...+.++
T Consensus 130 l~~~Lr~~~~kFIlFcDDLSF--e--------------------------------~gd~~yK~LKs~LeG~ve~rP~NV 175 (287)
T COG2607 130 LVELLRARPEKFILFCDDLSF--E--------------------------------EGDDAYKALKSALEGGVEGRPANV 175 (287)
T ss_pred HHHHHhcCCceEEEEecCCCC--C--------------------------------CCchHHHHHHHHhcCCcccCCCeE
Confidence 888999999999999999732 0 011245566777888777777889
Q ss_pred EEEEecCCCCCCChhhh--------------------cCCCceeEEEecCCCHHHHHHHHHHhcC
Q 037859 348 IIVFTTNYVDKLDPALI--------------------RRGRMDKHIEMSYCCFEAFKVLAKNYLD 392 (504)
Q Consensus 348 ivI~tTN~~e~Ld~ALl--------------------RpGR~d~~I~~~~p~~e~~~~i~~~~l~ 392 (504)
+|.+|+|+...|+.-.. =..||...+.|..|+.++.-.|+.+|..
T Consensus 176 l~YATSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~ 240 (287)
T COG2607 176 LFYATSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAK 240 (287)
T ss_pred EEEEecCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHH
Confidence 99999998776653221 1139999999999999999999988864
No 137
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.30 E-value=2.2e-11 Score=118.88 Aligned_cols=149 Identities=19% Similarity=0.201 Sum_probs=89.8
Q ss_pred CCCccccccccC--hhHHHHHHHhh----cccccccCCCCCcHHHHHHHHHHhc---CCcEEEEeccccCC-hHHHHHHH
Q 037859 203 EHPATFDTLAME--TKKKEEIKKDL----KKGYLLYGPPGTGKSTMIAAMANFL---NYDVYDLELTTVQD-NSELRSLL 272 (504)
Q Consensus 203 ~~p~~f~~~~~~--~~~k~~i~~~l----~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~~~-~~~l~~l~ 272 (504)
..+.+|++++-. ......+.... .+.++||||||||||+|+.++|+++ +..+.++++..... ..++.+.+
T Consensus 16 ~~~~~fd~f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~~~~~~~~~~ 95 (235)
T PRK08084 16 PDDETFASFYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAWFVPEVLEGM 95 (235)
T ss_pred CCcCCccccccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhhhhHHHHHHh
Confidence 344568887633 22222222221 3568999999999999999999876 44566666654321 12232222
Q ss_pred HhccCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccCCCceEEEEe
Q 037859 273 IDTSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERIIVFT 352 (504)
Q Consensus 273 ~~~~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~~~~ivI~t 352 (504)
.+-.+|+|||||.+- + .......+-.++|.+ .. .+...+++.+
T Consensus 96 ---~~~dlliiDdi~~~~---~---------------------------~~~~~~~lf~l~n~~---~e-~g~~~li~ts 138 (235)
T PRK08084 96 ---EQLSLVCIDNIECIA---G---------------------------DELWEMAIFDLYNRI---LE-SGRTRLLITG 138 (235)
T ss_pred ---hhCCEEEEeChhhhc---C---------------------------CHHHHHHHHHHHHHH---HH-cCCCeEEEeC
Confidence 234689999999852 1 111222343444432 11 1112344444
Q ss_pred cCCCCC---CChhhhcCCCce--eEEEecCCCHHHHHHHHHHh
Q 037859 353 TNYVDK---LDPALIRRGRMD--KHIEMSYCCFEAFKVLAKNY 390 (504)
Q Consensus 353 TN~~e~---Ld~ALlRpGR~d--~~I~~~~p~~e~~~~i~~~~ 390 (504)
++.+.. +.|.|.. |+. ..+.+..|+.+++.++++..
T Consensus 139 ~~~p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~ 179 (235)
T PRK08084 139 DRPPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLR 179 (235)
T ss_pred CCChHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHH
Confidence 555554 5799999 885 78999999999999998764
No 138
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.28 E-value=1.3e-10 Score=121.89 Aligned_cols=148 Identities=20% Similarity=0.266 Sum_probs=100.5
Q ss_pred cccccChhHHHHHHHhh--------cccccccCCCCCcHHHHHHHHHHhc-----CCcEEEEeccccCCh----------
Q 037859 209 DTLAMETKKKEEIKKDL--------KKGYLLYGPPGTGKSTMIAAMANFL-----NYDVYDLELTTVQDN---------- 265 (504)
Q Consensus 209 ~~~~~~~~~k~~i~~~l--------~rg~LL~GPpGtGKTsla~aiA~~l-----~~~i~~l~~~~~~~~---------- 265 (504)
+.+...++..++|...+ +..+++|||||||||++++.+++.+ +..++.+++....+.
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~ 109 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQ 109 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHH
Confidence 45666666666666665 3558999999999999999999887 567888887643221
Q ss_pred -------------HHHHH----HHHhccCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhH
Q 037859 266 -------------SELRS----LLIDTSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVT 328 (504)
Q Consensus 266 -------------~~l~~----l~~~~~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (504)
.++.. .+.....+.||+|||+|.+.. . .....
T Consensus 110 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~---~----------------------------~~~~~ 158 (394)
T PRK00411 110 LFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFE---K----------------------------EGNDV 158 (394)
T ss_pred hcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhc---c----------------------------CCchH
Confidence 11111 112223468999999998631 0 01235
Q ss_pred HHHHhhhhcCccccCCCceEEEEecCCC---CCCChhhhcCCCc-eeEEEecCCCHHHHHHHHHHhcC
Q 037859 329 LSGLLNFIDGLWSASGEERIIVFTTNYV---DKLDPALIRRGRM-DKHIEMSYCCFEAFKVLAKNYLD 392 (504)
Q Consensus 329 ls~lL~~lDg~~~~~~~~~ivI~tTN~~---e~Ld~ALlRpGR~-d~~I~~~~p~~e~~~~i~~~~l~ 392 (504)
+..|+..++... +..+.+|+++|.. +.+++.+.+ |+ ...|.|+.++.++...|++..+.
T Consensus 159 l~~l~~~~~~~~---~~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~ 221 (394)
T PRK00411 159 LYSLLRAHEEYP---GARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVE 221 (394)
T ss_pred HHHHHHhhhccC---CCeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHH
Confidence 666776665432 2257788888865 357888877 55 35789999999999999987763
No 139
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=4.1e-11 Score=131.78 Aligned_cols=148 Identities=19% Similarity=0.355 Sum_probs=115.4
Q ss_pred ccccccChhHHHHHHHhh------------ccc-ccccCCCCCcHHHHHHHHHHhcC---CcEEEEeccccCChHHHHHH
Q 037859 208 FDTLAMETKKKEEIKKDL------------KKG-YLLYGPPGTGKSTMIAAMANFLN---YDVYDLELTTVQDNSELRSL 271 (504)
Q Consensus 208 f~~~~~~~~~k~~i~~~l------------~rg-~LL~GPpGtGKTsla~aiA~~l~---~~i~~l~~~~~~~~~~l~~l 271 (504)
-+.|+++++..+.|.+.+ |-| +||.||+|+|||-||+++|..+. -.++.+|++.......+.++
T Consensus 490 ~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrL 569 (786)
T COG0542 490 KKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRL 569 (786)
T ss_pred hcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHH
Confidence 346778887777777777 444 78899999999999999999996 78999999988766667766
Q ss_pred HHhc------------------cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHh
Q 037859 272 LIDT------------------SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLL 333 (504)
Q Consensus 272 ~~~~------------------~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL 333 (504)
+..- ...|||++|||+.. +..+++-||
T Consensus 570 IGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKA-----------------------------------HpdV~nilL 614 (786)
T COG0542 570 IGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKA-----------------------------------HPDVFNLLL 614 (786)
T ss_pred hCCCCCCceeccccchhHhhhcCCCeEEEechhhhc-----------------------------------CHHHHHHHH
Confidence 6442 23589999999974 456899999
Q ss_pred hhhcCccccCC-------CceEEEEecCCC----------------------------CCCChhhhcCCCceeEEEecCC
Q 037859 334 NFIDGLWSASG-------EERIIVFTTNYV----------------------------DKLDPALIRRGRMDKHIEMSYC 378 (504)
Q Consensus 334 ~~lDg~~~~~~-------~~~ivI~tTN~~----------------------------e~Ld~ALlRpGR~d~~I~~~~p 378 (504)
+.||.-.-..+ .+.|||||||-- ..+.|+++. |+|.+|.|...
T Consensus 615 QVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~~L 692 (786)
T COG0542 615 QVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLN--RIDEIIPFNPL 692 (786)
T ss_pred HHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHh--hcccEEeccCC
Confidence 99984322222 235899999821 124578888 99999999999
Q ss_pred CHHHHHHHHHHhcC
Q 037859 379 CFEAFKVLAKNYLD 392 (504)
Q Consensus 379 ~~e~~~~i~~~~l~ 392 (504)
+.+...+|+...+.
T Consensus 693 ~~~~l~~Iv~~~L~ 706 (786)
T COG0542 693 SKEVLERIVDLQLN 706 (786)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999998874
No 140
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.26 E-value=5.8e-11 Score=130.81 Aligned_cols=152 Identities=19% Similarity=0.314 Sum_probs=102.2
Q ss_pred CCCccccccccChhHHHHHHHhh----cccccccCCCCCcHHHHHHHHHHhc----------CCcEEEEeccccC-ChHH
Q 037859 203 EHPATFDTLAMETKKKEEIKKDL----KKGYLLYGPPGTGKSTMIAAMANFL----------NYDVYDLELTTVQ-DNSE 267 (504)
Q Consensus 203 ~~p~~f~~~~~~~~~k~~i~~~l----~rg~LL~GPpGtGKTsla~aiA~~l----------~~~i~~l~~~~~~-~~~~ 267 (504)
..|.+|+.++++....+.++..+ +..++|+||||||||++|+++++.. +.+++.+++..+. +...
T Consensus 148 ~rp~~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~ 227 (615)
T TIGR02903 148 LRPRAFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPRE 227 (615)
T ss_pred cCcCcHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHH
Confidence 35889999999998888887777 5569999999999999999998765 3467888876542 1111
Q ss_pred HH----------------HHHHh------------ccCCeEEEEecccccccccccccccccccccccccCccccccccc
Q 037859 268 LR----------------SLLID------------TSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKED 319 (504)
Q Consensus 268 l~----------------~l~~~------------~~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (504)
+. +.+.. .....+|||||++.+-
T Consensus 228 i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld----------------------------- 278 (615)
T TIGR02903 228 VTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELD----------------------------- 278 (615)
T ss_pred HhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCC-----------------------------
Confidence 10 11111 1245799999998751
Q ss_pred CCCcchhhHHHHHhhhhcC--------cc----------------ccCCCceEEEE-ecCCCCCCChhhhcCCCceeEEE
Q 037859 320 GGSKKSKVTLSGLLNFIDG--------LW----------------SASGEERIIVF-TTNYVDKLDPALIRRGRMDKHIE 374 (504)
Q Consensus 320 ~~~~~~~~~ls~lL~~lDg--------~~----------------~~~~~~~ivI~-tTN~~e~Ld~ALlRpGR~d~~I~ 374 (504)
......|+..|+. .+ ......+++|+ ||+.++.++++|.+ ||. .+.
T Consensus 279 ------~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~ 349 (615)
T TIGR02903 279 ------PLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVF 349 (615)
T ss_pred ------HHHHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEE
Confidence 1112223332211 00 01122345555 56778889999998 996 678
Q ss_pred ecCCCHHHHHHHHHHhcC
Q 037859 375 MSYCCFEAFKVLAKNYLD 392 (504)
Q Consensus 375 ~~~p~~e~~~~i~~~~l~ 392 (504)
|+..+.+++..|++.++.
T Consensus 350 ~~pls~edi~~Il~~~a~ 367 (615)
T TIGR02903 350 FEPLTPEDIALIVLNAAE 367 (615)
T ss_pred eCCCCHHHHHHHHHHHHH
Confidence 999999999999998764
No 141
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.26 E-value=3.6e-11 Score=130.00 Aligned_cols=181 Identities=14% Similarity=0.205 Sum_probs=107.9
Q ss_pred ecCCCccccccccChhHH------HHHHHhh---cccccccCCCCCcHHHHHHHHHHhc-----CCcEEEEeccccCCh-
Q 037859 201 FFEHPATFDTLAMETKKK------EEIKKDL---KKGYLLYGPPGTGKSTMIAAMANFL-----NYDVYDLELTTVQDN- 265 (504)
Q Consensus 201 ~~~~p~~f~~~~~~~~~k------~~i~~~l---~rg~LL~GPpGtGKTsla~aiA~~l-----~~~i~~l~~~~~~~~- 265 (504)
.+....+|++++..+.-. ..+.+.. .+.++|||++|||||+|+.|||+++ ++.++++++..+...
T Consensus 280 ~L~~~~TFDnFvvG~sN~~A~aaa~avae~~~~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el 359 (617)
T PRK14086 280 RLNPKYTFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEF 359 (617)
T ss_pred CCCCCCCHhhhcCCCccHHHHHHHHHHHhCccccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHH
Confidence 344556799987655332 2222222 2348999999999999999999986 567788877554210
Q ss_pred ------HHHHHHHHhccCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCc
Q 037859 266 ------SELRSLLIDTSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGL 339 (504)
Q Consensus 266 ------~~l~~l~~~~~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~ 339 (504)
..+..+........+|+||||+.+. ++ .. +...|++.++.+
T Consensus 360 ~~al~~~~~~~f~~~y~~~DLLlIDDIq~l~---gk---------------------------e~---tqeeLF~l~N~l 406 (617)
T PRK14086 360 INSIRDGKGDSFRRRYREMDILLVDDIQFLE---DK---------------------------ES---TQEEFFHTFNTL 406 (617)
T ss_pred HHHHHhccHHHHHHHhhcCCEEEEehhcccc---CC---------------------------HH---HHHHHHHHHHHH
Confidence 0111111222456899999999862 11 11 122333333333
Q ss_pred cccCCCceEEEEecCCC----CCCChhhhcCCCc--eeEEEecCCCHHHHHHHHHHhcCcCCcchHHH-HhcCccCCCCC
Q 037859 340 WSASGEERIIVFTTNYV----DKLDPALIRRGRM--DKHIEMSYCCFEAFKVLAKNYLDIDSHELYAV-IESMPAETNMT 412 (504)
Q Consensus 340 ~~~~~~~~ivI~tTN~~----e~Ld~ALlRpGR~--d~~I~~~~p~~e~~~~i~~~~l~~~~~~~~~~-i~~l~~~~~~s 412 (504)
... + .-||+|+|.+ ..+++.|.+ || ...+.+..|+.+.|..|++.........+.++ ++-|+....=+
T Consensus 407 ~e~--g-k~IIITSd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~rn 481 (617)
T PRK14086 407 HNA--N-KQIVLSSDRPPKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISRN 481 (617)
T ss_pred Hhc--C-CCEEEecCCChHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccCC
Confidence 221 2 3355677754 357899999 77 67779999999999999998765443333332 23333333334
Q ss_pred HHHHHHh
Q 037859 413 PADVAEN 419 (504)
Q Consensus 413 ~a~i~~~ 419 (504)
.++|.+.
T Consensus 482 vR~Lega 488 (617)
T PRK14086 482 IRELEGA 488 (617)
T ss_pred HHHHHHH
Confidence 4454443
No 142
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.26 E-value=1.2e-10 Score=132.86 Aligned_cols=148 Identities=17% Similarity=0.372 Sum_probs=106.2
Q ss_pred ccccccChhHHHHHHHhh------------ccc-ccccCCCCCcHHHHHHHHHHhc---CCcEEEEeccccCChHHHHHH
Q 037859 208 FDTLAMETKKKEEIKKDL------------KKG-YLLYGPPGTGKSTMIAAMANFL---NYDVYDLELTTVQDNSELRSL 271 (504)
Q Consensus 208 f~~~~~~~~~k~~i~~~l------------~rg-~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~~~~~~l~~l 271 (504)
++.++++....+.|...+ |.| +||+||||||||++|++||..+ +.+++.++++.........++
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~L 646 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRL 646 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHH
Confidence 567888888777777776 113 7899999999999999999987 456888888766433333333
Q ss_pred H---------------Hh---ccCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHh
Q 037859 272 L---------------ID---TSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLL 333 (504)
Q Consensus 272 ~---------------~~---~~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL 333 (504)
+ .+ ....+||+|||||.+ +....+.|+
T Consensus 647 iG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka-----------------------------------~~~v~~~Ll 691 (857)
T PRK10865 647 VGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKA-----------------------------------HPDVFNILL 691 (857)
T ss_pred hCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhC-----------------------------------CHHHHHHHH
Confidence 2 11 123489999999974 233667777
Q ss_pred hhhcCcc--ccC-----CCceEEEEecCCC-------------------------CCCChhhhcCCCceeEEEecCCCHH
Q 037859 334 NFIDGLW--SAS-----GEERIIVFTTNYV-------------------------DKLDPALIRRGRMDKHIEMSYCCFE 381 (504)
Q Consensus 334 ~~lDg~~--~~~-----~~~~ivI~tTN~~-------------------------e~Ld~ALlRpGR~d~~I~~~~p~~e 381 (504)
+.+|.-. ... -.+.+||+|||.. ..+.|+|+. |+|.++.|.+++.+
T Consensus 692 ~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld~iivF~PL~~e 769 (857)
T PRK10865 692 QVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RIDEVVVFHPLGEQ 769 (857)
T ss_pred HHHhhCceecCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCCeeEecCCCCHH
Confidence 7775311 100 1235799999972 235689998 99999999999999
Q ss_pred HHHHHHHHhcC
Q 037859 382 AFKVLAKNYLD 392 (504)
Q Consensus 382 ~~~~i~~~~l~ 392 (504)
....|++.++.
T Consensus 770 dl~~Iv~~~L~ 780 (857)
T PRK10865 770 HIASIAQIQLQ 780 (857)
T ss_pred HHHHHHHHHHH
Confidence 99999998874
No 143
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.25 E-value=4.7e-11 Score=124.62 Aligned_cols=44 Identities=36% Similarity=0.582 Sum_probs=38.5
Q ss_pred ccccccChhHHHHHHHhh--cccccccCCCCCcHHHHHHHHHHhcC
Q 037859 208 FDTLAMETKKKEEIKKDL--KKGYLLYGPPGTGKSTMIAAMANFLN 251 (504)
Q Consensus 208 f~~~~~~~~~k~~i~~~l--~rg~LL~GPpGtGKTsla~aiA~~l~ 251 (504)
++++.+++...+.++..+ ++.++|+||||||||++|+++|..++
T Consensus 174 l~d~~i~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~~la~~l~ 219 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTIKKNIILQGPPGVGKTFVARRLAYLLT 219 (459)
T ss_pred hhcccCCHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHhc
Confidence 667778888888888877 77899999999999999999999885
No 144
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.25 E-value=1.1e-10 Score=119.29 Aligned_cols=149 Identities=21% Similarity=0.301 Sum_probs=101.0
Q ss_pred cccccccChhHHHHHHHhh----cccccccCCCCCcHHHHHHHHHHhc-------CCcEE-------------E------
Q 037859 207 TFDTLAMETKKKEEIKKDL----KKGYLLYGPPGTGKSTMIAAMANFL-------NYDVY-------------D------ 256 (504)
Q Consensus 207 ~f~~~~~~~~~k~~i~~~l----~rg~LL~GPpGtGKTsla~aiA~~l-------~~~i~-------------~------ 256 (504)
+|..++++++.|..++-.+ ..++||.||||||||++++++++.+ ++++- .
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 81 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMCEEVRIRVDSQ 81 (337)
T ss_pred CccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccChHHhhhhhcc
Confidence 5888999999998876655 3559999999999999999999877 22111 0
Q ss_pred ------------Eecc------ccCChHHHHHHHH-----------hccCCeEEEEeccccccccccccccccccccccc
Q 037859 257 ------------LELT------TVQDNSELRSLLI-----------DTSSKSILVIEDIDCSLDLTGQREKKKEKDEDKE 307 (504)
Q Consensus 257 ------------l~~~------~~~~~~~l~~l~~-----------~~~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~ 307 (504)
.++. .+.+.-.+...+. ....+.+||||||+.+
T Consensus 82 ~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L------------------ 143 (337)
T TIGR02030 82 EPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLL------------------ 143 (337)
T ss_pred cccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhC------------------
Confidence 1111 0111222333221 1234689999999985
Q ss_pred ccCcccccccccCCCcchhhHHHHHhhhhc---------CccccCCCceEEEEecCCCC-CCChhhhcCCCceeEEEecC
Q 037859 308 EKNPIEKKEKEDGGSKKSKVTLSGLLNFID---------GLWSASGEERIIVFTTNYVD-KLDPALIRRGRMDKHIEMSY 377 (504)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~ls~lL~~lD---------g~~~~~~~~~ivI~tTN~~e-~Ld~ALlRpGR~d~~I~~~~ 377 (504)
+..+.+.||+.|+ |.........++|+|+|..+ .++++|+. ||.+++.+++
T Consensus 144 -----------------~~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~ 204 (337)
T TIGR02030 144 -----------------EDHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRT 204 (337)
T ss_pred -----------------CHHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCC
Confidence 2235666777664 22222223457777888665 69999999 9999999999
Q ss_pred CCH-HHHHHHHHHhcC
Q 037859 378 CCF-EAFKVLAKNYLD 392 (504)
Q Consensus 378 p~~-e~~~~i~~~~l~ 392 (504)
|.. +++.+|+++...
T Consensus 205 p~~~eer~eIL~~~~~ 220 (337)
T TIGR02030 205 VRDVELRVEIVERRTE 220 (337)
T ss_pred CCCHHHHHHHHHhhhh
Confidence 976 888888887543
No 145
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.22 E-value=1.6e-10 Score=132.19 Aligned_cols=148 Identities=17% Similarity=0.364 Sum_probs=106.4
Q ss_pred ccccccChhHHHHHHHhhc------------cc-ccccCCCCCcHHHHHHHHHHhc---CCcEEEEeccccCChHHHHHH
Q 037859 208 FDTLAMETKKKEEIKKDLK------------KG-YLLYGPPGTGKSTMIAAMANFL---NYDVYDLELTTVQDNSELRSL 271 (504)
Q Consensus 208 f~~~~~~~~~k~~i~~~l~------------rg-~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~~~~~~l~~l 271 (504)
-+.+++++...+.|...+. .+ +||+||||||||.+|++||..+ +.+++.++++.......+.++
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l 643 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARL 643 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHh
Confidence 3567888888888887771 23 8899999999999999999987 467888888765433222222
Q ss_pred H---------------H---hccCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHh
Q 037859 272 L---------------I---DTSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLL 333 (504)
Q Consensus 272 ~---------------~---~~~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL 333 (504)
+ . .....+||||||||.+ +....+.||
T Consensus 644 ~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka-----------------------------------~~~v~~~Ll 688 (852)
T TIGR03346 644 IGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKA-----------------------------------HPDVFNVLL 688 (852)
T ss_pred cCCCCCccCcccccHHHHHHHcCCCcEEEEeccccC-----------------------------------CHHHHHHHH
Confidence 1 1 1234589999999975 234667788
Q ss_pred hhhcCcc--ccC-----CCceEEEEecCCCC-------------------------CCChhhhcCCCceeEEEecCCCHH
Q 037859 334 NFIDGLW--SAS-----GEERIIVFTTNYVD-------------------------KLDPALIRRGRMDKHIEMSYCCFE 381 (504)
Q Consensus 334 ~~lDg~~--~~~-----~~~~ivI~tTN~~e-------------------------~Ld~ALlRpGR~d~~I~~~~p~~e 381 (504)
+.+|.-. +.. -.+.|||+|||... .+.|.|+. |+|..|.|.+++.+
T Consensus 689 ~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~PL~~e 766 (852)
T TIGR03346 689 QVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHPLGRE 766 (852)
T ss_pred HHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCCcCHH
Confidence 8775321 111 13468999999721 24577887 99999999999999
Q ss_pred HHHHHHHHhcC
Q 037859 382 AFKVLAKNYLD 392 (504)
Q Consensus 382 ~~~~i~~~~l~ 392 (504)
....|+...+.
T Consensus 767 ~l~~I~~l~L~ 777 (852)
T TIGR03346 767 QIARIVEIQLG 777 (852)
T ss_pred HHHHHHHHHHH
Confidence 99999988873
No 146
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.21 E-value=3.8e-11 Score=127.47 Aligned_cols=181 Identities=15% Similarity=0.238 Sum_probs=103.3
Q ss_pred ecCCCccccccccChhHHH---HHHHhh-----cccccccCCCCCcHHHHHHHHHHhc-----CCcEEEEeccccCCh--
Q 037859 201 FFEHPATFDTLAMETKKKE---EIKKDL-----KKGYLLYGPPGTGKSTMIAAMANFL-----NYDVYDLELTTVQDN-- 265 (504)
Q Consensus 201 ~~~~p~~f~~~~~~~~~k~---~i~~~l-----~rg~LL~GPpGtGKTsla~aiA~~l-----~~~i~~l~~~~~~~~-- 265 (504)
++....+|++++..+.-.. ...... ..+++||||||||||+|++|+|+++ +..++++++..+...
T Consensus 97 ~l~~~~tFdnFv~g~~n~~a~~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~ 176 (440)
T PRK14088 97 PLNPDYTFENFVVGPGNSFAYHAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLV 176 (440)
T ss_pred CCCCCCcccccccCCchHHHHHHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHH
Confidence 4445567888774443221 111111 2458999999999999999999986 456777776543110
Q ss_pred -----HHHHHHHHhc-cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCc
Q 037859 266 -----SELRSLLIDT-SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGL 339 (504)
Q Consensus 266 -----~~l~~l~~~~-~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~ 339 (504)
..+....... ..+.+|+|||+|.+.+ .. .+...|+..++.+
T Consensus 177 ~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~~---~~------------------------------~~q~elf~~~n~l 223 (440)
T PRK14088 177 DSMKEGKLNEFREKYRKKVDVLLIDDVQFLIG---KT------------------------------GVQTELFHTFNEL 223 (440)
T ss_pred HHHhcccHHHHHHHHHhcCCEEEEechhhhcC---cH------------------------------HHHHHHHHHHHHH
Confidence 0111111111 2578999999998631 10 0112333334333
Q ss_pred cccCCCceEEEEecC-CCCC---CChhhhcCCCc--eeEEEecCCCHHHHHHHHHHhcCcCCcchHHH-HhcCccCCCCC
Q 037859 340 WSASGEERIIVFTTN-YVDK---LDPALIRRGRM--DKHIEMSYCCFEAFKVLAKNYLDIDSHELYAV-IESMPAETNMT 412 (504)
Q Consensus 340 ~~~~~~~~ivI~tTN-~~e~---Ld~ALlRpGR~--d~~I~~~~p~~e~~~~i~~~~l~~~~~~~~~~-i~~l~~~~~~s 412 (504)
... + ..+|+||| .|.. +++.|.. || ...+.+..|+.+.|..|++.........+.++ +..++....-+
T Consensus 224 ~~~--~-k~iIitsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~~ 298 (440)
T PRK14088 224 HDS--G-KQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDDN 298 (440)
T ss_pred HHc--C-CeEEEECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccccC
Confidence 221 2 34555554 4443 5678888 66 46889999999999999998875433323222 33334333444
Q ss_pred HHHHHHh
Q 037859 413 PADVAEN 419 (504)
Q Consensus 413 ~a~i~~~ 419 (504)
.++|.+.
T Consensus 299 ~R~L~g~ 305 (440)
T PRK14088 299 LRRLRGA 305 (440)
T ss_pred HHHHHHH
Confidence 4444444
No 147
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.21 E-value=3.5e-11 Score=127.55 Aligned_cols=127 Identities=20% Similarity=0.322 Sum_probs=84.9
Q ss_pred ccccccCCCCCcHHHHHHHHHHhc---CCcEEEEeccccCChHHHHH--------HHHh-ccCCeEEEEecccccccccc
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANFL---NYDVYDLELTTVQDNSELRS--------LLID-TSSKSILVIEDIDCSLDLTG 294 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~~~~~~l~~--------l~~~-~~~~~Il~iDeiD~~~~~~~ 294 (504)
++++||||||+|||+|++|+|+++ +..+++++...+.. .+.. .|.. .....+|+||||+.+. +
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~--~~~~~l~~~~~~~f~~~~~~~dvLiIDDiq~l~---~ 216 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTE--HLVSAIRSGEMQRFRQFYRNVDALFIEDIEVFS---G 216 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHH--HHHHHHhcchHHHHHHHcccCCEEEEcchhhhc---C
Confidence 468999999999999999999976 57788877654311 1111 1221 2456799999999852 1
Q ss_pred cccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccCCCceEEEEecCCC----CCCChhhhcCCCce
Q 037859 295 QREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERIIVFTTNYV----DKLDPALIRRGRMD 370 (504)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~~~~ivI~tTN~~----e~Ld~ALlRpGR~d 370 (504)
+ ......+-.++|.+ .. .+..+|+|+|.+ ..++++|.+ ||.
T Consensus 217 k---------------------------~~~qeelf~l~N~l---~~---~~k~IIlts~~~p~~l~~l~~rL~S--R~~ 261 (445)
T PRK12422 217 K---------------------------GATQEEFFHTFNSL---HT---EGKLIVISSTCAPQDLKAMEERLIS--RFE 261 (445)
T ss_pred C---------------------------hhhHHHHHHHHHHH---HH---CCCcEEEecCCCHHHHhhhHHHHHh--hhc
Confidence 1 11122333344432 11 123566666653 357899999 885
Q ss_pred --eEEEecCCCHHHHHHHHHHhcCc
Q 037859 371 --KHIEMSYCCFEAFKVLAKNYLDI 393 (504)
Q Consensus 371 --~~I~~~~p~~e~~~~i~~~~l~~ 393 (504)
..+.+..|+.+.+..|++.....
T Consensus 262 ~Gl~~~l~~pd~e~r~~iL~~k~~~ 286 (445)
T PRK12422 262 WGIAIPLHPLTKEGLRSFLERKAEA 286 (445)
T ss_pred CCeEEecCCCCHHHHHHHHHHHHHH
Confidence 88999999999999999887644
No 148
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.20 E-value=1.7e-10 Score=131.52 Aligned_cols=146 Identities=17% Similarity=0.328 Sum_probs=104.4
Q ss_pred cccccChhHHHHHHHhh------------ccc-ccccCCCCCcHHHHHHHHHHhc---CCcEEEEeccccCChHH-----
Q 037859 209 DTLAMETKKKEEIKKDL------------KKG-YLLYGPPGTGKSTMIAAMANFL---NYDVYDLELTTVQDNSE----- 267 (504)
Q Consensus 209 ~~~~~~~~~k~~i~~~l------------~rg-~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~~~~~~----- 267 (504)
+.|++++...+.|...+ |.| +||+||||||||++|+++|..+ +.+++.++++.......
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~ 588 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLI 588 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhc
Confidence 56778888888887776 233 7899999999999999999987 35788888776532222
Q ss_pred --------------HHHHHHhccCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHh
Q 037859 268 --------------LRSLLIDTSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLL 333 (504)
Q Consensus 268 --------------l~~l~~~~~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL 333 (504)
|...+. ....+||+|||||.+ +....+.||
T Consensus 589 g~~~gyvg~~~~~~l~~~~~-~~p~~VvllDeieka-----------------------------------~~~v~~~Ll 632 (821)
T CHL00095 589 GSPPGYVGYNEGGQLTEAVR-KKPYTVVLFDEIEKA-----------------------------------HPDIFNLLL 632 (821)
T ss_pred CCCCcccCcCccchHHHHHH-hCCCeEEEECChhhC-----------------------------------CHHHHHHHH
Confidence 222221 134589999999985 234677788
Q ss_pred hhhcCcc--cc-----CCCceEEEEecCCCCC-------------------------------------CChhhhcCCCc
Q 037859 334 NFIDGLW--SA-----SGEERIIVFTTNYVDK-------------------------------------LDPALIRRGRM 369 (504)
Q Consensus 334 ~~lDg~~--~~-----~~~~~ivI~tTN~~e~-------------------------------------Ld~ALlRpGR~ 369 (504)
..+|.-. .. .-.+.+||+|||.... +.|.|+. |+
T Consensus 633 q~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~pefln--Ri 710 (821)
T CHL00095 633 QILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLN--RL 710 (821)
T ss_pred HHhccCceecCCCcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhc--cC
Confidence 8887421 11 1135789999984311 2366777 99
Q ss_pred eeEEEecCCCHHHHHHHHHHhcC
Q 037859 370 DKHIEMSYCCFEAFKVLAKNYLD 392 (504)
Q Consensus 370 d~~I~~~~p~~e~~~~i~~~~l~ 392 (504)
|..|.|...+.++...|+...+.
T Consensus 711 d~ii~F~pL~~~~l~~Iv~~~l~ 733 (821)
T CHL00095 711 DEIIVFRQLTKNDVWEIAEIMLK 733 (821)
T ss_pred CeEEEeCCCCHHHHHHHHHHHHH
Confidence 99999999999999999988874
No 149
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.20 E-value=1.3e-10 Score=119.10 Aligned_cols=140 Identities=19% Similarity=0.270 Sum_probs=103.3
Q ss_pred cccccc-ChhHHHHHHHhh-----cccccccCCCCCcHHHHHHHHHHhcCC------------------------cEEEE
Q 037859 208 FDTLAM-ETKKKEEIKKDL-----KKGYLLYGPPGTGKSTMIAAMANFLNY------------------------DVYDL 257 (504)
Q Consensus 208 f~~~~~-~~~~k~~i~~~l-----~rg~LL~GPpGtGKTsla~aiA~~l~~------------------------~i~~l 257 (504)
|+++.+ ++..++.+...+ +..||||||+|+||+++|+++|+.+.+ ++..+
T Consensus 4 ~~~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i 83 (329)
T PRK08058 4 WEQLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLV 83 (329)
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEe
Confidence 456666 777777777776 667999999999999999999998742 23333
Q ss_pred ecccc-CChHHHHHHHHhc------cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHH
Q 037859 258 ELTTV-QDNSELRSLLIDT------SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLS 330 (504)
Q Consensus 258 ~~~~~-~~~~~l~~l~~~~------~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls 330 (504)
....- ...++++.+.... ..+-|++|||+|.+ +....+
T Consensus 84 ~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~-----------------------------------~~~a~N 128 (329)
T PRK08058 84 APDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKM-----------------------------------TASAAN 128 (329)
T ss_pred ccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhh-----------------------------------CHHHHH
Confidence 32211 1234566655433 24579999999985 233667
Q ss_pred HHhhhhcCccccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHH
Q 037859 331 GLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKN 389 (504)
Q Consensus 331 ~lL~~lDg~~~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~ 389 (504)
.||..|+.. ++..++|++|+.++.|.|+++. |+ .+++|..|+.++....++.
T Consensus 129 aLLK~LEEP----p~~~~~Il~t~~~~~ll~TIrS--Rc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 129 SLLKFLEEP----SGGTTAILLTENKHQILPTILS--RC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred HHHHHhcCC----CCCceEEEEeCChHhCcHHHHh--hc-eeeeCCCCCHHHHHHHHHH
Confidence 899999854 3557888899999999999999 88 6899999999988777764
No 150
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.19 E-value=4e-10 Score=123.99 Aligned_cols=181 Identities=18% Similarity=0.266 Sum_probs=110.7
Q ss_pred ccccChhHHHHHHHhh--------cccc-cccCCCCCcHHHHHHHHHHhc----------CCcEEEEeccccCCh-----
Q 037859 210 TLAMETKKKEEIKKDL--------KKGY-LLYGPPGTGKSTMIAAMANFL----------NYDVYDLELTTVQDN----- 265 (504)
Q Consensus 210 ~~~~~~~~k~~i~~~l--------~rg~-LL~GPpGtGKTsla~aiA~~l----------~~~i~~l~~~~~~~~----- 265 (504)
.+...++..++|...| +.++ ++|||||||||++++.+..++ .+.++.++|..+.+.
T Consensus 756 ~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYq 835 (1164)
T PTZ00112 756 YLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQ 835 (1164)
T ss_pred cCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHH
Confidence 3444455555555555 3334 599999999999999998776 256788888654322
Q ss_pred ------------------HHHHHHHHhc----cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCc
Q 037859 266 ------------------SELRSLLIDT----SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSK 323 (504)
Q Consensus 266 ------------------~~l~~l~~~~----~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (504)
..+..+|... ....||+|||||.+.. .
T Consensus 836 vI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~k---K---------------------------- 884 (1164)
T PTZ00112 836 VLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLIT---K---------------------------- 884 (1164)
T ss_pred HHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCc---c----------------------------
Confidence 1233444332 1246999999999741 0
Q ss_pred chhhHHHHHhhhhcCccccCCCceEEEEecCC---CCCCChhhhcCCCcee-EEEecCCCHHHHHHHHHHhcCcCCcchH
Q 037859 324 KSKVTLSGLLNFIDGLWSASGEERIIVFTTNY---VDKLDPALIRRGRMDK-HIEMSYCCFEAFKVLAKNYLDIDSHELY 399 (504)
Q Consensus 324 ~~~~~ls~lL~~lDg~~~~~~~~~ivI~tTN~---~e~Ld~ALlRpGR~d~-~I~~~~p~~e~~~~i~~~~l~~~~~~~~ 399 (504)
....|-.|++... ..+..++||+++|. ++.|+|.+.. ||.. .|.|++++.+++..|++..+....
T Consensus 885 -~QDVLYnLFR~~~----~s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~---- 953 (1164)
T PTZ00112 885 -TQKVLFTLFDWPT----KINSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCK---- 953 (1164)
T ss_pred -HHHHHHHHHHHhh----ccCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCC----
Confidence 1234444444322 12345788899985 5678888888 6643 488999999999999987764321
Q ss_pred HHHhcCccCCCCCHHHHHHhhCC--CCCCCCHHHHHHHHHHHHHH
Q 037859 400 AVIESMPAETNMTPADVAENLMP--KCDEDDTETCLKNLIEALKA 442 (504)
Q Consensus 400 ~~i~~l~~~~~~s~a~i~~~l~~--~~~~~~~~~~l~~li~al~~ 442 (504)
.-+++.-| +++.. +...+|+..|++-+..|++.
T Consensus 954 ---------gVLdDdAI-ELIArkVAq~SGDARKALDILRrAgEi 988 (1164)
T PTZ00112 954 ---------EIIDHTAI-QLCARKVANVSGDIRKALQICRKAFEN 988 (1164)
T ss_pred ---------CCCCHHHH-HHHHHhhhhcCCHHHHHHHHHHHHHhh
Confidence 11233222 23222 12346677777766666553
No 151
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.19 E-value=2.1e-10 Score=117.09 Aligned_cols=124 Identities=19% Similarity=0.303 Sum_probs=94.8
Q ss_pred cccccccCCCCCcHHHHHHHHHHhcCC------------------------cEEEEeccc---cCChHHHHHHHHhc---
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFLNY------------------------DVYDLELTT---VQDNSELRSLLIDT--- 275 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l~~------------------------~i~~l~~~~---~~~~~~l~~l~~~~--- 275 (504)
+.+|||+||+|+|||++|.++|+.+.+ +++.+.... .-.-+++|.+....
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~~~ 101 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVVQT 101 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHhhc
Confidence 678999999999999999999998854 455554321 12345666665443
Q ss_pred ---cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccCCCceEEEEe
Q 037859 276 ---SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERIIVFT 352 (504)
Q Consensus 276 ---~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~~~~ivI~t 352 (504)
...-|++||++|.+ +....+.||..|+.- +++.++|++
T Consensus 102 ~~~~~~kv~iI~~a~~m-----------------------------------~~~aaNaLLK~LEEP----p~~~~fiL~ 142 (328)
T PRK05707 102 AQLGGRKVVLIEPAEAM-----------------------------------NRNAANALLKSLEEP----SGDTVLLLI 142 (328)
T ss_pred cccCCCeEEEECChhhC-----------------------------------CHHHHHHHHHHHhCC----CCCeEEEEE
Confidence 24568899999986 234678899998863 356889999
Q ss_pred cCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhc
Q 037859 353 TNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYL 391 (504)
Q Consensus 353 TN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l 391 (504)
|+.++.|.|.++. |+ ..+.|+.|+.++....+....
T Consensus 143 t~~~~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~L~~~~ 178 (328)
T PRK05707 143 SHQPSRLLPTIKS--RC-QQQACPLPSNEESLQWLQQAL 178 (328)
T ss_pred ECChhhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHhc
Confidence 9999999999999 98 579999999988877776543
No 152
>PRK05642 DNA replication initiation factor; Validated
Probab=99.18 E-value=1.5e-10 Score=112.82 Aligned_cols=125 Identities=18% Similarity=0.201 Sum_probs=79.9
Q ss_pred ccccccCCCCCcHHHHHHHHHHhc---CCcEEEEeccccCChHHHHHHHHhccCCeEEEEeccccccccccccccccccc
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANFL---NYDVYDLELTTVQDNSELRSLLIDTSSKSILVIEDIDCSLDLTGQREKKKEKD 303 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~~~~~~l~~l~~~~~~~~Il~iDeiD~~~~~~~~~~~~~~~~ 303 (504)
+.++||||+|||||+|++|+++++ +..+++++...+... ...++....+--+|+|||++.+. +.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~--~~~~~~~~~~~d~LiiDDi~~~~---~~-------- 112 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR--GPELLDNLEQYELVCLDDLDVIA---GK-------- 112 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh--hHHHHHhhhhCCEEEEechhhhc---CC--------
Confidence 568899999999999999999765 567788877655321 11222222334589999999742 11
Q ss_pred ccccccCcccccccccCCCcchhhHHHHHhhhhcCccccCCCceEEEEecCCCC---CCChhhhcCCCc--eeEEEecCC
Q 037859 304 EDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERIIVFTTNYVD---KLDPALIRRGRM--DKHIEMSYC 378 (504)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~~~~ivI~tTN~~e---~Ld~ALlRpGR~--d~~I~~~~p 378 (504)
.... ..|.+.++.... .+..++|.++..+. .+.|.|.. |+ ...+.+..|
T Consensus 113 -------------------~~~~---~~Lf~l~n~~~~--~g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~ 166 (234)
T PRK05642 113 -------------------ADWE---EALFHLFNRLRD--SGRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGL 166 (234)
T ss_pred -------------------hHHH---HHHHHHHHHHHh--cCCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCC
Confidence 1112 233444433321 22345444444443 24699999 87 477888999
Q ss_pred CHHHHHHHHHHh
Q 037859 379 CFEAFKVLAKNY 390 (504)
Q Consensus 379 ~~e~~~~i~~~~ 390 (504)
+.+++..+++..
T Consensus 167 ~~e~~~~il~~k 178 (234)
T PRK05642 167 SDEDKLRALQLR 178 (234)
T ss_pred CHHHHHHHHHHH
Confidence 999999998854
No 153
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.18 E-value=9e-11 Score=133.52 Aligned_cols=145 Identities=20% Similarity=0.351 Sum_probs=103.7
Q ss_pred cccccChhHHHHHHHhh------------ccc-ccccCCCCCcHHHHHHHHHHhc---CCcEEEEeccccCChHH-----
Q 037859 209 DTLAMETKKKEEIKKDL------------KKG-YLLYGPPGTGKSTMIAAMANFL---NYDVYDLELTTVQDNSE----- 267 (504)
Q Consensus 209 ~~~~~~~~~k~~i~~~l------------~rg-~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~~~~~~----- 267 (504)
+.|+++++..+.|.+.+ |.| +||+||||||||.+|+++|..+ ...++.++++.......
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~ 645 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLK 645 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhcccc
Confidence 46778888877777776 445 7999999999999999999988 45678888776532222
Q ss_pred --------------HHHHHHhccCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHh
Q 037859 268 --------------LRSLLIDTSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLL 333 (504)
Q Consensus 268 --------------l~~l~~~~~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL 333 (504)
|...+. ..+.+||+|||||.+ +....+.|+
T Consensus 646 g~~~gyvg~~~~g~L~~~v~-~~p~svvllDEieka-----------------------------------~~~v~~~Ll 689 (852)
T TIGR03345 646 GSPPGYVGYGEGGVLTEAVR-RKPYSVVLLDEVEKA-----------------------------------HPDVLELFY 689 (852)
T ss_pred CCCCCcccccccchHHHHHH-hCCCcEEEEechhhc-----------------------------------CHHHHHHHH
Confidence 222222 246799999999974 223566677
Q ss_pred hhhcCcc--ccCC-----CceEEEEecCCC-----------------------------CCCChhhhcCCCceeEEEecC
Q 037859 334 NFIDGLW--SASG-----EERIIVFTTNYV-----------------------------DKLDPALIRRGRMDKHIEMSY 377 (504)
Q Consensus 334 ~~lDg~~--~~~~-----~~~ivI~tTN~~-----------------------------e~Ld~ALlRpGR~d~~I~~~~ 377 (504)
..+|.-. ...| .+.+||+|||.. ..+.|+|+. |++ .|.|..
T Consensus 690 q~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~p 766 (852)
T TIGR03345 690 QVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIPYLP 766 (852)
T ss_pred HHhhcceeecCCCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeCC
Confidence 7776322 1111 347899999841 125688888 998 789999
Q ss_pred CCHHHHHHHHHHhcC
Q 037859 378 CCFEAFKVLAKNYLD 392 (504)
Q Consensus 378 p~~e~~~~i~~~~l~ 392 (504)
.+.++...|+...+.
T Consensus 767 Ls~e~l~~Iv~~~L~ 781 (852)
T TIGR03345 767 LDDDVLAAIVRLKLD 781 (852)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999988874
No 154
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.18 E-value=1.4e-10 Score=119.71 Aligned_cols=35 Identities=31% Similarity=0.527 Sum_probs=33.1
Q ss_pred cccccccCCCCCcHHHHHHHHHHhcCCcEEEEecc
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELT 260 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~ 260 (504)
|+++||+||||||||++|+++|..++.+++.++.+
T Consensus 47 p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat 81 (441)
T TIGR00390 47 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEAT 81 (441)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecc
Confidence 58999999999999999999999999999999865
No 155
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.18 E-value=3.9e-11 Score=111.19 Aligned_cols=106 Identities=21% Similarity=0.399 Sum_probs=74.0
Q ss_pred cccccCCCCCcHHHHHHHHHHhcCC----cEEEEeccccCC----hHHHHHHHHhcc------CCeEEEEeccccccccc
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFLNY----DVYDLELTTVQD----NSELRSLLIDTS------SKSILVIEDIDCSLDLT 293 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l~~----~i~~l~~~~~~~----~~~l~~l~~~~~------~~~Il~iDeiD~~~~~~ 293 (504)
.+||.||+|||||.+|+++|..+.. +++.+|++.... ...+.+++...+ ...||||||||.+...
T Consensus 5 ~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa~~~- 83 (171)
T PF07724_consen 5 NFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKAHPS- 83 (171)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGCSHT-
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccchHHhhhhhhhhcccceeeccchhhhhhHHHhhcccc-
Confidence 4789999999999999999999996 999999999877 444555554442 3469999999996421
Q ss_pred ccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCcccc--C-----CCceEEEEecCCCC
Q 037859 294 GQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSA--S-----GEERIIVFTTNYVD 357 (504)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~--~-----~~~~ivI~tTN~~e 357 (504)
...+.+.....+.+.||..||+-.-. . -.+.++|||+|--.
T Consensus 84 -----------------------~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 84 -----------------------NSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp -----------------------TTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred -----------------------ccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 01112223345678888888754211 1 13478999999654
No 156
>PRK07952 DNA replication protein DnaC; Validated
Probab=99.17 E-value=4.9e-11 Score=116.50 Aligned_cols=89 Identities=24% Similarity=0.397 Sum_probs=63.0
Q ss_pred ecCCCccccccccChhHHHHHHHhh----------cccccccCCCCCcHHHHHHHHHHhc---CCcEEEEeccccCC---
Q 037859 201 FFEHPATFDTLAMETKKKEEIKKDL----------KKGYLLYGPPGTGKSTMIAAMANFL---NYDVYDLELTTVQD--- 264 (504)
Q Consensus 201 ~~~~p~~f~~~~~~~~~k~~i~~~l----------~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~~~--- 264 (504)
+..++.+|+++....+..+.++..+ ..|++|+||||||||+|+.|||+++ +..++.++...+..
T Consensus 64 ~~~~~~tFdnf~~~~~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~ 143 (244)
T PRK07952 64 PLHQNCSFENYRVECEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMK 143 (244)
T ss_pred ccccCCccccccCCCchHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHH
Confidence 4556778999886654333333333 2589999999999999999999998 67787777655421
Q ss_pred ------hHHHHHHHHhccCCeEEEEeccccc
Q 037859 265 ------NSELRSLLIDTSSKSILVIEDIDCS 289 (504)
Q Consensus 265 ------~~~l~~l~~~~~~~~Il~iDeiD~~ 289 (504)
+....+++.......+|+|||+++.
T Consensus 144 ~~~~~~~~~~~~~l~~l~~~dlLvIDDig~~ 174 (244)
T PRK07952 144 DTFSNSETSEEQLLNDLSNVDLLVIDEIGVQ 174 (244)
T ss_pred HHHhhccccHHHHHHHhccCCEEEEeCCCCC
Confidence 1123345555567889999999883
No 157
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.17 E-value=3.1e-11 Score=104.86 Aligned_cols=104 Identities=26% Similarity=0.334 Sum_probs=62.5
Q ss_pred ccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccCChHHHHHH--HHhc-------c---CCeEEEEecccccccccccc
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQDNSELRSL--LIDT-------S---SKSILVIEDIDCSLDLTGQR 296 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~~l~~l--~~~~-------~---~~~Il~iDeiD~~~~~~~~~ 296 (504)
+||.|+||+|||++|+++|..++..+.++.++.-...+++... +... . -..|+++|||+..
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DEiNra------- 74 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFTNILLADEINRA------- 74 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEETGGGS-------
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhhhceeeecccccC-------
Confidence 7999999999999999999999999999988643333333211 1100 1 2369999999874
Q ss_pred cccccccccccccCcccccccccCCCcchhhHHHHHhhhhc-------CccccCCCceEEEEecCCCC-----CCChhhh
Q 037859 297 EKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFID-------GLWSASGEERIIVFTTNYVD-----KLDPALI 364 (504)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lD-------g~~~~~~~~~ivI~tTN~~e-----~Ld~ALl 364 (504)
...+.|.||..|. |..-......+||+|-|..+ .|++|++
T Consensus 75 ----------------------------ppktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~ 126 (131)
T PF07726_consen 75 ----------------------------PPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQL 126 (131)
T ss_dssp -----------------------------HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHH
T ss_pred ----------------------------CHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHh
Confidence 3457888998774 32223345578888999887 6899999
Q ss_pred cCCCc
Q 037859 365 RRGRM 369 (504)
Q Consensus 365 RpGR~ 369 (504)
. ||
T Consensus 127 D--RF 129 (131)
T PF07726_consen 127 D--RF 129 (131)
T ss_dssp T--TS
T ss_pred c--cc
Confidence 9 88
No 158
>PRK06620 hypothetical protein; Validated
Probab=99.16 E-value=2.2e-10 Score=110.08 Aligned_cols=113 Identities=21% Similarity=0.283 Sum_probs=75.0
Q ss_pred ccccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccCChHHHHHHHHhccCCeEEEEecccccccccccccccccccccc
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQDNSELRSLLIDTSSKSILVIEDIDCSLDLTGQREKKKEKDEDK 306 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~~l~~l~~~~~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~ 306 (504)
+.++||||||||||+|++++++..+.. .+..... .. ..+ ....+++|||||.+
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~--~~~~~~~--~~---~~~---~~~d~lliDdi~~~----------------- 97 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAY--IIKDIFF--NE---EIL---EKYNAFIIEDIENW----------------- 97 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCE--Ecchhhh--ch---hHH---hcCCEEEEeccccc-----------------
Confidence 448999999999999999999988753 2221111 11 111 24478999999953
Q ss_pred cccCcccccccccCCCcchhhHHHHHhhhhcCccccCCCceEEEEecCCCCC--CChhhhcCCCce--eEEEecCCCHHH
Q 037859 307 EEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERIIVFTTNYVDK--LDPALIRRGRMD--KHIEMSYCCFEA 382 (504)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~~~~ivI~tTN~~e~--Ld~ALlRpGR~d--~~I~~~~p~~e~ 382 (504)
....+-.++|.+.. .+..++|.++..|.. + |+|+. |+. ..+.+..|+.+.
T Consensus 98 ------------------~~~~lf~l~N~~~e-----~g~~ilits~~~p~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~ 151 (214)
T PRK06620 98 ------------------QEPALLHIFNIINE-----KQKYLLLTSSDKSRNFTL-PDLSS--RIKSVLSILLNSPDDEL 151 (214)
T ss_pred ------------------hHHHHHHHHHHHHh-----cCCEEEEEcCCCccccch-HHHHH--HHhCCceEeeCCCCHHH
Confidence 01244455555431 233566665554443 6 88998 884 378999999999
Q ss_pred HHHHHHHhcC
Q 037859 383 FKVLAKNYLD 392 (504)
Q Consensus 383 ~~~i~~~~l~ 392 (504)
+..++++...
T Consensus 152 ~~~~l~k~~~ 161 (214)
T PRK06620 152 IKILIFKHFS 161 (214)
T ss_pred HHHHHHHHHH
Confidence 9999887653
No 159
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.15 E-value=2.1e-10 Score=118.57 Aligned_cols=51 Identities=25% Similarity=0.417 Sum_probs=41.9
Q ss_pred cccChhHHHHHHHhh------------------cccccccCCCCCcHHHHHHHHHHhcCCcEEEEeccc
Q 037859 211 LAMETKKKEEIKKDL------------------KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTT 261 (504)
Q Consensus 211 ~~~~~~~k~~i~~~l------------------~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~ 261 (504)
++++++.|+.+...+ ++++||+||||||||++|+++|..++.+++.++++.
T Consensus 17 IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~ 85 (443)
T PRK05201 17 IIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATK 85 (443)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchh
Confidence 556666666655444 468999999999999999999999999999998763
No 160
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.14 E-value=8.6e-11 Score=110.77 Aligned_cols=43 Identities=28% Similarity=0.552 Sum_probs=36.5
Q ss_pred ccccccChhHHHHHHHhh--cccccccCCCCCcHHHHHHHHHHhc
Q 037859 208 FDTLAMETKKKEEIKKDL--KKGYLLYGPPGTGKSTMIAAMANFL 250 (504)
Q Consensus 208 f~~~~~~~~~k~~i~~~l--~rg~LL~GPpGtGKTsla~aiA~~l 250 (504)
|++|.+++..|..+.-.. ..++||+||||||||++|++++..|
T Consensus 2 f~dI~GQe~aKrAL~iAAaG~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAAGGHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHHCC--EEEES-CCCTHHHHHHHHHHCS
T ss_pred hhhhcCcHHHHHHHHHHHcCCCCeEEECCCCCCHHHHHHHHHHhC
Confidence 788999999999888776 7889999999999999999999876
No 161
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.12 E-value=7.5e-10 Score=112.40 Aligned_cols=142 Identities=18% Similarity=0.247 Sum_probs=106.3
Q ss_pred cccccccChhHHHHHHHhh-----cccccccCCCCCcHHHHHHHHHHhcCCc------------------EEEEecccc-
Q 037859 207 TFDTLAMETKKKEEIKKDL-----KKGYLLYGPPGTGKSTMIAAMANFLNYD------------------VYDLELTTV- 262 (504)
Q Consensus 207 ~f~~~~~~~~~k~~i~~~l-----~rg~LL~GPpGtGKTsla~aiA~~l~~~------------------i~~l~~~~~- 262 (504)
.|+++++++..++.+...+ +.+|||+||+|+||+++|.++|+.+.+. ++.+.....
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~ 81 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQH 81 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccc
Confidence 4789999999999999888 6779999999999999999999987321 232222100
Q ss_pred ----------------------CChHHHHHHHHhc------cCCeEEEEecccccccccccccccccccccccccCcccc
Q 037859 263 ----------------------QDNSELRSLLIDT------SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEK 314 (504)
Q Consensus 263 ----------------------~~~~~l~~l~~~~------~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (504)
-.-+.++.+.... ...-|++||++|.+
T Consensus 82 ~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m------------------------- 136 (314)
T PRK07399 82 QGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETM------------------------- 136 (314)
T ss_pred cccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhc-------------------------
Confidence 0112445543332 25689999999985
Q ss_pred cccccCCCcchhhHHHHHhhhhcCccccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhc
Q 037859 315 KEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYL 391 (504)
Q Consensus 315 ~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l 391 (504)
+....+.||..|+.. + ..++|++|+.++.|-|+++. |+ ..|.|+.++.++...++....
T Consensus 137 ----------~~~aaNaLLK~LEEP----p-~~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~ 195 (314)
T PRK07399 137 ----------NEAAANALLKTLEEP----G-NGTLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLG 195 (314)
T ss_pred ----------CHHHHHHHHHHHhCC----C-CCeEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHHhh
Confidence 233567899988764 2 34788888899999999999 88 689999999999988888764
No 162
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.12 E-value=2.4e-10 Score=110.35 Aligned_cols=129 Identities=22% Similarity=0.292 Sum_probs=80.3
Q ss_pred cccccCCCCCcHHHHHHHHHHhc-----CCcEEEEeccccCCh-------HHHHHHHHhccCCeEEEEeccccccccccc
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFL-----NYDVYDLELTTVQDN-------SELRSLLIDTSSKSILVIEDIDCSLDLTGQ 295 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l-----~~~i~~l~~~~~~~~-------~~l~~l~~~~~~~~Il~iDeiD~~~~~~~~ 295 (504)
.++||||+|+|||.|..|+++++ +..+.+++...+... ..+..+......--+|+|||+|.+. +
T Consensus 36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~~~DlL~iDDi~~l~---~- 111 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLRSADLLIIDDIQFLA---G- 111 (219)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHCTSSEEEEETGGGGT---T-
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhhcCCEEEEecchhhc---C-
Confidence 47899999999999999999875 566888876553210 1122333444577899999999862 1
Q ss_pred ccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccCCCceEEEEecCCCC---CCChhhhcCCCce--
Q 037859 296 REKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERIIVFTTNYVD---KLDPALIRRGRMD-- 370 (504)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~~~~ivI~tTN~~e---~Ld~ALlRpGR~d-- 370 (504)
...+...|...++.+.. .+..+||.+...|. .++|.|.. ||.
T Consensus 112 -----------------------------~~~~q~~lf~l~n~~~~--~~k~li~ts~~~P~~l~~~~~~L~S--Rl~~G 158 (219)
T PF00308_consen 112 -----------------------------KQRTQEELFHLFNRLIE--SGKQLILTSDRPPSELSGLLPDLRS--RLSWG 158 (219)
T ss_dssp -----------------------------HHHHHHHHHHHHHHHHH--TTSEEEEEESS-TTTTTTS-HHHHH--HHHCS
T ss_pred -----------------------------chHHHHHHHHHHHHHHh--hCCeEEEEeCCCCccccccChhhhh--hHhhc
Confidence 11233444444444422 23345444445554 35788888 774
Q ss_pred eEEEecCCCHHHHHHHHHHhcCc
Q 037859 371 KHIEMSYCCFEAFKVLAKNYLDI 393 (504)
Q Consensus 371 ~~I~~~~p~~e~~~~i~~~~l~~ 393 (504)
..+.+..|+.+.+..|++.....
T Consensus 159 l~~~l~~pd~~~r~~il~~~a~~ 181 (219)
T PF00308_consen 159 LVVELQPPDDEDRRRILQKKAKE 181 (219)
T ss_dssp EEEEE----HHHHHHHHHHHHHH
T ss_pred chhhcCCCCHHHHHHHHHHHHHH
Confidence 58899999999999999988643
No 163
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.10 E-value=8.3e-10 Score=112.31 Aligned_cols=120 Identities=22% Similarity=0.290 Sum_probs=89.3
Q ss_pred cccccccCCCCCcHHHHHHHHHHhcC------------------------CcEEEEeccccCC----hHHHHHHHHhc--
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFLN------------------------YDVYDLELTTVQD----NSELRSLLIDT-- 275 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l~------------------------~~i~~l~~~~~~~----~~~l~~l~~~~-- 275 (504)
+..+||+||||||||++|.++|+.+. .+++.++.+.... .+.++.+....
T Consensus 24 ~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~i~~~~vr~~~~~~~~ 103 (325)
T COG0470 24 PHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKIDIIVEQVRELAEFLSE 103 (325)
T ss_pred CceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCcchHHHHHHHHHHhcc
Confidence 44699999999999999999999986 4788888777654 23444444333
Q ss_pred ----cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccCCCceEEEE
Q 037859 276 ----SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERIIVF 351 (504)
Q Consensus 276 ----~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~~~~ivI~ 351 (504)
...-|++|||+|.+- ....+.++..+..- .....+|+
T Consensus 104 ~~~~~~~kviiidead~mt-----------------------------------~~A~nallk~lEep----~~~~~~il 144 (325)
T COG0470 104 SPLEGGYKVVIIDEADKLT-----------------------------------EDAANALLKTLEEP----PKNTRFIL 144 (325)
T ss_pred CCCCCCceEEEeCcHHHHh-----------------------------------HHHHHHHHHHhccC----CCCeEEEE
Confidence 245799999999862 23567777777643 45578999
Q ss_pred ecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHH
Q 037859 352 TTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLA 387 (504)
Q Consensus 352 tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~ 387 (504)
+||.+..+-|.+.. |+ ..+.|..|+...+....
T Consensus 145 ~~n~~~~il~tI~S--Rc-~~i~f~~~~~~~~i~~~ 177 (325)
T COG0470 145 ITNDPSKILPTIRS--RC-QRIRFKPPSRLEAIAWL 177 (325)
T ss_pred EcCChhhccchhhh--cc-eeeecCCchHHHHHHHh
Confidence 99999999999998 88 68899886655544333
No 164
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.10 E-value=9.4e-10 Score=112.09 Aligned_cols=54 Identities=24% Similarity=0.339 Sum_probs=47.5
Q ss_pred cccc-ccccChhHHHHHHHhh----------cccccccCCCCCcHHHHHHHHHHhcCC-------cEEEEec
Q 037859 206 ATFD-TLAMETKKKEEIKKDL----------KKGYLLYGPPGTGKSTMIAAMANFLNY-------DVYDLEL 259 (504)
Q Consensus 206 ~~f~-~~~~~~~~k~~i~~~l----------~rg~LL~GPpGtGKTsla~aiA~~l~~-------~i~~l~~ 259 (504)
..|+ ++.+.++.++++++++ ++.++|+||||||||++|++||+.++. ++|.+..
T Consensus 47 ~~F~~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 47 RFFDHDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred cccchhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 3466 7888999999999988 466899999999999999999999976 8999877
No 165
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.10 E-value=3.8e-10 Score=120.08 Aligned_cols=129 Identities=16% Similarity=0.307 Sum_probs=86.3
Q ss_pred ccccccCCCCCcHHHHHHHHHHhc-----CCcEEEEeccccCCh---------HHHHHHHHhccCCeEEEEecccccccc
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANFL-----NYDVYDLELTTVQDN---------SELRSLLIDTSSKSILVIEDIDCSLDL 292 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~l-----~~~i~~l~~~~~~~~---------~~l~~l~~~~~~~~Il~iDeiD~~~~~ 292 (504)
++++||||+|||||+|++|+++++ +..+++++...+... ..+...........+|+||||+.+.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~dvLiIDDiq~l~-- 219 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEICQNDVLIIDDVQFLS-- 219 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHhccCCEEEEecccccc--
Confidence 568999999999999999999965 467777776553210 1222222333566799999999752
Q ss_pred cccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccCCCceEEEEecCCC-C---CCChhhhcCCC
Q 037859 293 TGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERIIVFTTNYV-D---KLDPALIRRGR 368 (504)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~~~~ivI~tTN~~-e---~Ld~ALlRpGR 368 (504)
++ ......+-.++|.+.. . + ..+|+|+|.+ + .+++.|.. |
T Consensus 220 -~k---------------------------~~~~e~lf~l~N~~~~---~--~-k~iIltsd~~P~~l~~l~~rL~S--R 263 (450)
T PRK14087 220 -YK---------------------------EKTNEIFFTIFNNFIE---N--D-KQLFFSSDKSPELLNGFDNRLIT--R 263 (450)
T ss_pred -CC---------------------------HHHHHHHHHHHHHHHH---c--C-CcEEEECCCCHHHHhhccHHHHH--H
Confidence 11 1123344455554422 1 2 2467776643 2 46889999 8
Q ss_pred c--eeEEEecCCCHHHHHHHHHHhcCc
Q 037859 369 M--DKHIEMSYCCFEAFKVLAKNYLDI 393 (504)
Q Consensus 369 ~--d~~I~~~~p~~e~~~~i~~~~l~~ 393 (504)
| ...+.+..|+.+++..|+++.+..
T Consensus 264 ~~~Gl~~~L~~pd~e~r~~iL~~~~~~ 290 (450)
T PRK14087 264 FNMGLSIAIQKLDNKTATAIIKKEIKN 290 (450)
T ss_pred HhCCceeccCCcCHHHHHHHHHHHHHh
Confidence 8 478889999999999999988754
No 166
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.10 E-value=7.3e-10 Score=118.94 Aligned_cols=91 Identities=29% Similarity=0.440 Sum_probs=76.9
Q ss_pred cceeeecCCCccccccccChhHHHHHHHhh--------------------------------------cccccccCCCCC
Q 037859 196 KWSHVFFEHPATFDTLAMETKKKEEIKKDL--------------------------------------KKGYLLYGPPGT 237 (504)
Q Consensus 196 ~w~~~~~~~p~~f~~~~~~~~~k~~i~~~l--------------------------------------~rg~LL~GPpGt 237 (504)
.|. .--.|+.|.++..++..-..++.+| ++-+||+||||-
T Consensus 260 LWV--dky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGl 337 (877)
T KOG1969|consen 260 LWV--DKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGL 337 (877)
T ss_pred eee--cccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCC
Confidence 564 4457888999999998888888877 455899999999
Q ss_pred cHHHHHHHHHHhcCCcEEEEeccccCChHHHHHHHHhc----------cCCeEEEEecccc
Q 037859 238 GKSTMIAAMANFLNYDVYDLELTTVQDNSELRSLLIDT----------SSKSILVIEDIDC 288 (504)
Q Consensus 238 GKTsla~aiA~~l~~~i~~l~~~~~~~~~~l~~l~~~~----------~~~~Il~iDeiD~ 288 (504)
||||||+.||++.||.++.++.++-.+...++..+..+ .+|.+|+|||||-
T Consensus 338 GKTTLAHViAkqaGYsVvEINASDeRt~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDG 398 (877)
T KOG1969|consen 338 GKTTLAHVIAKQAGYSVVEINASDERTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDG 398 (877)
T ss_pred ChhHHHHHHHHhcCceEEEecccccccHHHHHHHHHHHHhhccccccCCCcceEEEecccC
Confidence 99999999999999999999999987777776655443 4789999999996
No 167
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.08 E-value=6.2e-10 Score=117.22 Aligned_cols=141 Identities=16% Similarity=0.139 Sum_probs=87.9
Q ss_pred ccChhHHHHHHHhh--cccccccCCCCCcHHHHHHHHHHhcCC--cEEEEeccccCChHHH------HH-----HHHh--
Q 037859 212 AMETKKKEEIKKDL--KKGYLLYGPPGTGKSTMIAAMANFLNY--DVYDLELTTVQDNSEL------RS-----LLID-- 274 (504)
Q Consensus 212 ~~~~~~k~~i~~~l--~rg~LL~GPpGtGKTsla~aiA~~l~~--~i~~l~~~~~~~~~~l------~~-----l~~~-- 274 (504)
.+.++..+.++..+ ...+||+||||||||++|+++|..++. ++..+.+... +..++ .. .|..
T Consensus 23 ~gre~vI~lll~aalag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~ft-tp~DLfG~l~i~~~~~~g~f~r~~ 101 (498)
T PRK13531 23 YERSHAIRLCLLAALSGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFS-TPEEVFGPLSIQALKDEGRYQRLT 101 (498)
T ss_pred cCcHHHHHHHHHHHccCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeec-CcHHhcCcHHHhhhhhcCchhhhc
Confidence 44455555444444 666999999999999999999997753 2333322210 11111 11 1111
Q ss_pred ---ccCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhc-Ccccc-----CCC
Q 037859 275 ---TSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFID-GLWSA-----SGE 345 (504)
Q Consensus 275 ---~~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lD-g~~~~-----~~~ 345 (504)
.+...|+|+|||..+ +..+.+.||..|. +.... .-.
T Consensus 102 ~G~L~~A~lLfLDEI~ra-----------------------------------sp~~QsaLLeam~Er~~t~g~~~~~lp 146 (498)
T PRK13531 102 SGYLPEAEIVFLDEIWKA-----------------------------------GPAILNTLLTAINERRFRNGAHEEKIP 146 (498)
T ss_pred CCccccccEEeecccccC-----------------------------------CHHHHHHHHHHHHhCeEecCCeEEeCC
Confidence 112348999999764 3457888888883 22111 112
Q ss_pred ceEEEEecCCCC---CCChhhhcCCCceeEEEecCCC-HHHHHHHHHHh
Q 037859 346 ERIIVFTTNYVD---KLDPALIRRGRMDKHIEMSYCC-FEAFKVLAKNY 390 (504)
Q Consensus 346 ~~ivI~tTN~~e---~Ld~ALlRpGR~d~~I~~~~p~-~e~~~~i~~~~ 390 (504)
.+++++|||... ...+|+.. ||-++|.+++|+ .+..+.|+...
T Consensus 147 ~rfiv~ATN~LPE~g~~leAL~D--RFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 147 MRLLVTASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred CcEEEEECCCCcccCCchHHhHh--hEEEEEECCCCCchHHHHHHHHcc
Confidence 367888888432 23359999 999999999997 56767777653
No 168
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.07 E-value=2.1e-09 Score=98.79 Aligned_cols=123 Identities=21% Similarity=0.285 Sum_probs=86.9
Q ss_pred ChhHHHHHHHhh-----cccccccCCCCCcHHHHHHHHHHhcC-----------------------CcEEEEecccc---
Q 037859 214 ETKKKEEIKKDL-----KKGYLLYGPPGTGKSTMIAAMANFLN-----------------------YDVYDLELTTV--- 262 (504)
Q Consensus 214 ~~~~k~~i~~~l-----~rg~LL~GPpGtGKTsla~aiA~~l~-----------------------~~i~~l~~~~~--- 262 (504)
++...+.+...+ +..|||+||+|+||+++|.++|+.+- .+++.++....
T Consensus 2 q~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~ 81 (162)
T PF13177_consen 2 QEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKKS 81 (162)
T ss_dssp -HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSSS
T ss_pred cHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccch
Confidence 344455555554 67799999999999999999998762 24555654433
Q ss_pred CChHHHHHHHHhcc------CCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhh
Q 037859 263 QDNSELRSLLIDTS------SKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFI 336 (504)
Q Consensus 263 ~~~~~l~~l~~~~~------~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~l 336 (504)
-..+.++.+..... ..-|++|||+|.+ +....+.||..|
T Consensus 82 i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l-----------------------------------~~~a~NaLLK~L 126 (162)
T PF13177_consen 82 IKIDQIREIIEFLSLSPSEGKYKVIIIDEADKL-----------------------------------TEEAQNALLKTL 126 (162)
T ss_dssp BSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS------------------------------------HHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhcCCceEEEeehHhhh-----------------------------------hHHHHHHHHHHh
Confidence 24466776665542 4679999999986 345788999999
Q ss_pred cCccccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCC
Q 037859 337 DGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYC 378 (504)
Q Consensus 337 Dg~~~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p 378 (504)
+.. +...++|++|+.++.|-|.++. |+ ..|.|+..
T Consensus 127 Eep----p~~~~fiL~t~~~~~il~TI~S--Rc-~~i~~~~l 161 (162)
T PF13177_consen 127 EEP----PENTYFILITNNPSKILPTIRS--RC-QVIRFRPL 161 (162)
T ss_dssp HST----TTTEEEEEEES-GGGS-HHHHT--TS-EEEEE---
T ss_pred cCC----CCCEEEEEEECChHHChHHHHh--hc-eEEecCCC
Confidence 864 4568999999999999999999 88 67877653
No 169
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.07 E-value=3.7e-10 Score=125.17 Aligned_cols=149 Identities=19% Similarity=0.252 Sum_probs=102.5
Q ss_pred cccccccChhHHHHHHHhh--c--ccccccCCCCCcHHHHHHHHHHhc--------------------------------
Q 037859 207 TFDTLAMETKKKEEIKKDL--K--KGYLLYGPPGTGKSTMIAAMANFL-------------------------------- 250 (504)
Q Consensus 207 ~f~~~~~~~~~k~~i~~~l--~--rg~LL~GPpGtGKTsla~aiA~~l-------------------------------- 250 (504)
+|..+++++..|..++-.+ + .||||+||||||||++|++|+..+
T Consensus 2 pf~~ivGq~~~~~al~~~av~~~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~~ 81 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDPRIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRPS 81 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCCCCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhccccc
Confidence 4778999998887776655 2 479999999999999999999988
Q ss_pred ---CCcEEEEecccc----CChHHHHHHHH-----------hccCCeEEEEecccccccccccccccccccccccccCcc
Q 037859 251 ---NYDVYDLELTTV----QDNSELRSLLI-----------DTSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPI 312 (504)
Q Consensus 251 ---~~~i~~l~~~~~----~~~~~l~~l~~-----------~~~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (504)
..+++.+.++.. .+..++.+.+. ......|||||||+.+
T Consensus 82 ~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l----------------------- 138 (633)
T TIGR02442 82 EQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLL----------------------- 138 (633)
T ss_pred ccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhC-----------------------
Confidence 235555444321 11222333221 1125579999999986
Q ss_pred cccccccCCCcchhhHHHHHhhhhc-Cc--------cccCCCceEEEEecCCCC-CCChhhhcCCCceeEEEecCCC-HH
Q 037859 313 EKKEKEDGGSKKSKVTLSGLLNFID-GL--------WSASGEERIIVFTTNYVD-KLDPALIRRGRMDKHIEMSYCC-FE 381 (504)
Q Consensus 313 ~~~~~~~~~~~~~~~~ls~lL~~lD-g~--------~~~~~~~~ivI~tTN~~e-~Ld~ALlRpGR~d~~I~~~~p~-~e 381 (504)
+..+++.||+.|+ |. ........++|+|+|..+ .|.++|+. ||+++|.++++. .+
T Consensus 139 ------------~~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~ 204 (633)
T TIGR02442 139 ------------DDHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPE 204 (633)
T ss_pred ------------CHHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchH
Confidence 2346677787775 21 111123467888999654 68999999 999999999885 57
Q ss_pred HHHHHHHHhcC
Q 037859 382 AFKVLAKNYLD 392 (504)
Q Consensus 382 ~~~~i~~~~l~ 392 (504)
++.++++..+.
T Consensus 205 ~~~~il~~~~~ 215 (633)
T TIGR02442 205 ERVEIIRRRLA 215 (633)
T ss_pred HHHHHHHHHHh
Confidence 77778776443
No 170
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.05 E-value=7.4e-10 Score=96.77 Aligned_cols=64 Identities=28% Similarity=0.450 Sum_probs=47.0
Q ss_pred ccccccCCCCCcHHHHHHHHHHhcCCc---EEEEeccccCC--------------------hHHHHHHHHhcc--CCeEE
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANFLNYD---VYDLELTTVQD--------------------NSELRSLLIDTS--SKSIL 281 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~l~~~---i~~l~~~~~~~--------------------~~~l~~l~~~~~--~~~Il 281 (504)
+.++|+||||||||++++++|..+... ++.+++..... .......+..+. .+.||
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi 82 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVL 82 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 568999999999999999999999875 77777765321 122333333332 35999
Q ss_pred EEecccccc
Q 037859 282 VIEDIDCSL 290 (504)
Q Consensus 282 ~iDeiD~~~ 290 (504)
+|||++.+.
T Consensus 83 iiDei~~~~ 91 (148)
T smart00382 83 ILDEITSLL 91 (148)
T ss_pred EEECCcccC
Confidence 999999863
No 171
>PRK08116 hypothetical protein; Validated
Probab=99.05 E-value=8.1e-10 Score=109.80 Aligned_cols=116 Identities=20% Similarity=0.330 Sum_probs=74.7
Q ss_pred ccccccCCCCCcHHHHHHHHHHhc---CCcEEEEeccccCC----------hHHHHHHHHhccCCeEEEEeccccccccc
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANFL---NYDVYDLELTTVQD----------NSELRSLLIDTSSKSILVIEDIDCSLDLT 293 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~~~----------~~~l~~l~~~~~~~~Il~iDeiD~~~~~~ 293 (504)
+|++||||||||||+|+.|||+++ +.+++.++...+.. ......++.......+|+|||+...
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~~dlLviDDlg~e---- 190 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLVNADLLILDDLGAE---- 190 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhcCCCEEEEecccCC----
Confidence 569999999999999999999986 67888887654311 0112233444456679999999641
Q ss_pred ccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccCCCceEEEEecCCCC-----CCChhhhcCCC
Q 037859 294 GQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERIIVFTTNYVD-----KLDPALIRRGR 368 (504)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~~~~ivI~tTN~~e-----~Ld~ALlRpGR 368 (504)
..+......|.+.||.... .+..+|+|||... .+++++.. |
T Consensus 191 -----------------------------~~t~~~~~~l~~iin~r~~---~~~~~IiTsN~~~~eL~~~~~~ri~s--R 236 (268)
T PRK08116 191 -----------------------------RDTEWAREKVYNIIDSRYR---KGLPTIVTTNLSLEELKNQYGKRIYD--R 236 (268)
T ss_pred -----------------------------CCCHHHHHHHHHHHHHHHH---CCCCEEEECCCCHHHHHHHHhHHHHH--H
Confidence 0012234555666665432 2356888998652 25778887 7
Q ss_pred c---eeEEEecCCCH
Q 037859 369 M---DKHIEMSYCCF 380 (504)
Q Consensus 369 ~---d~~I~~~~p~~ 380 (504)
+ ...|.|.-++.
T Consensus 237 l~e~~~~v~~~g~d~ 251 (268)
T PRK08116 237 ILEMCTPVENEGKSY 251 (268)
T ss_pred HHHcCEEEEeeCcCh
Confidence 4 34566666654
No 172
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.04 E-value=1.9e-09 Score=110.31 Aligned_cols=123 Identities=17% Similarity=0.213 Sum_probs=92.1
Q ss_pred cccccccCCCCCcHHHHHHHHHHhcCCc-------------------------EEEEeccc-------------------
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFLNYD-------------------------VYDLELTT------------------- 261 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l~~~-------------------------i~~l~~~~------------------- 261 (504)
+.+|||+||+|+||+++|+++|..+.+. ++.+....
T Consensus 21 ~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~~~ 100 (342)
T PRK06964 21 PHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADADE 100 (342)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchhhc
Confidence 7899999999999999999999887442 22221110
Q ss_pred ----------cCChHHHHHHHHhcc------CCeEEEEecccccccccccccccccccccccccCcccccccccCCCcch
Q 037859 262 ----------VQDNSELRSLLIDTS------SKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKS 325 (504)
Q Consensus 262 ----------~~~~~~l~~l~~~~~------~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (504)
.-.-++++.+..... ..-|++||++|.+ +
T Consensus 101 ~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m-----------------------------------~ 145 (342)
T PRK06964 101 GGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEAL-----------------------------------N 145 (342)
T ss_pred ccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhc-----------------------------------C
Confidence 012245555554432 3458889988875 3
Q ss_pred hhHHHHHhhhhcCccccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHh
Q 037859 326 KVTLSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNY 390 (504)
Q Consensus 326 ~~~ls~lL~~lDg~~~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~ 390 (504)
....+.||..|+.- +++.++|++|++++.|.|.+++ |+ ..|.|+.|+.++....+...
T Consensus 146 ~~AaNaLLKtLEEP----p~~t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 146 VAAANALLKTLEEP----PPGTVFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred HHHHHHHHHHhcCC----CcCcEEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 44678999999853 4668999999999999999999 98 78999999999988877654
No 173
>PRK06526 transposase; Provisional
Probab=99.03 E-value=3.1e-10 Score=111.80 Aligned_cols=121 Identities=12% Similarity=0.173 Sum_probs=69.1
Q ss_pred hhHHHHHhhhhhHHhhhccceecccCCCCCccCccCccceeeecCCCccccccccChhHHHHHH--Hhh--cccccccCC
Q 037859 159 PYVNHVLAGGKAITVKNRQRKLYSNNPSKNWYGWRSTKWSHVFFEHPATFDTLAMETKKKEEIK--KDL--KKGYLLYGP 234 (504)
Q Consensus 159 ~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~p~~f~~~~~~~~~k~~i~--~~l--~rg~LL~GP 234 (504)
.||..+++.....+..++..+....+..+.-..+.+..|...|- ++......+. +++ +.+++|+||
T Consensus 37 e~l~~ll~~E~~~R~~~~~~~~lk~a~~p~~~~le~fd~~~~~~----------~~~~~~~~l~~~~fi~~~~nlll~Gp 106 (254)
T PRK06526 37 EFLAACLQREVAARESHGGEGRIRAARFPARKSLEEFDFDHQRS----------LKRDTIAHLGTLDFVTGKENVVFLGP 106 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChhhccCccCCC----------cchHHHHHHhcCchhhcCceEEEEeC
Confidence 46777887777766666655555444333222222222322111 1111111110 111 678999999
Q ss_pred CCCcHHHHHHHHHHhc---CCcEEEEeccccC-------ChHHHHHHHHhccCCeEEEEeccccc
Q 037859 235 PGTGKSTMIAAMANFL---NYDVYDLELTTVQ-------DNSELRSLLIDTSSKSILVIEDIDCS 289 (504)
Q Consensus 235 pGtGKTsla~aiA~~l---~~~i~~l~~~~~~-------~~~~l~~l~~~~~~~~Il~iDeiD~~ 289 (504)
||||||+|+.+|+.++ |+.++......+. ....+...+.......+|+|||++..
T Consensus 107 ~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l~~~dlLIIDD~g~~ 171 (254)
T PRK06526 107 PGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKLGRYPLLIVDEVGYI 171 (254)
T ss_pred CCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHhccCCEEEEcccccC
Confidence 9999999999998875 6666655544321 11123344444566789999999874
No 174
>PRK08181 transposase; Validated
Probab=99.03 E-value=4.6e-10 Score=111.24 Aligned_cols=64 Identities=28% Similarity=0.470 Sum_probs=47.8
Q ss_pred cccccccCCCCCcHHHHHHHHHHhc---CCcEEEEeccccCC-------hHHHHHHHHhccCCeEEEEeccccc
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFL---NYDVYDLELTTVQD-------NSELRSLLIDTSSKSILVIEDIDCS 289 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~~~-------~~~l~~l~~~~~~~~Il~iDeiD~~ 289 (504)
+.+++|+||||||||+|+.|+|+++ |+.+++++...+.. ...+.+.+....+..+|+|||++..
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~~~dLLIIDDlg~~ 179 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLDKFDLLILDDLAYV 179 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHhcCCEEEEeccccc
Confidence 6779999999999999999999765 67777776654311 1223445555567889999999874
No 175
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.01 E-value=9.6e-10 Score=118.99 Aligned_cols=144 Identities=17% Similarity=0.207 Sum_probs=93.8
Q ss_pred cccChhHHHHHHHhh-c------------c---cccccCCCCCcHHHHHHHHHHhcCCcEEEE----eccccCChHHHHH
Q 037859 211 LAMETKKKEEIKKDL-K------------K---GYLLYGPPGTGKSTMIAAMANFLNYDVYDL----ELTTVQDNSELRS 270 (504)
Q Consensus 211 ~~~~~~~k~~i~~~l-~------------r---g~LL~GPpGtGKTsla~aiA~~l~~~i~~l----~~~~~~~~~~l~~ 270 (504)
+.+.+..|..++-.+ . | .+||+|+||||||++++++++......|.. ++..+.. ..++.
T Consensus 205 i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~-~~~~~ 283 (509)
T smart00350 205 IYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTA-AVTRD 283 (509)
T ss_pred ccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccc-cceEc
Confidence 345566677666665 1 1 499999999999999999999876554432 1111111 11111
Q ss_pred ----------HHHhccCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcC--
Q 037859 271 ----------LLIDTSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDG-- 338 (504)
Q Consensus 271 ----------l~~~~~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg-- 338 (504)
-........+++|||+|.+ .....+.|+..|+.
T Consensus 284 ~~~g~~~~~~G~l~~A~~Gil~iDEi~~l-----------------------------------~~~~q~~L~e~me~~~ 328 (509)
T smart00350 284 PETREFTLEGGALVLADNGVCCIDEFDKM-----------------------------------DDSDRTAIHEAMEQQT 328 (509)
T ss_pred cCcceEEecCccEEecCCCEEEEechhhC-----------------------------------CHHHHHHHHHHHhcCE
Confidence 0111235789999999985 12345556666532
Q ss_pred -------ccccCCCceEEEEecCCCC-------------CCChhhhcCCCceeEEEe-cCCCHHHHHHHHHHhcC
Q 037859 339 -------LWSASGEERIIVFTTNYVD-------------KLDPALIRRGRMDKHIEM-SYCCFEAFKVLAKNYLD 392 (504)
Q Consensus 339 -------~~~~~~~~~ivI~tTN~~e-------------~Ld~ALlRpGR~d~~I~~-~~p~~e~~~~i~~~~l~ 392 (504)
....-.....||+|+|..+ .|+|+|++ |||+.+.+ ++|+.+....|+++.+.
T Consensus 329 i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~~ 401 (509)
T smart00350 329 ISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILS--RFDLLFVVLDEVDEERDRELAKHVVD 401 (509)
T ss_pred EEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhC--ceeeEEEecCCCChHHHHHHHHHHHH
Confidence 2111123457899999764 58999999 99986655 88999999999988653
No 176
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=7.1e-09 Score=107.25 Aligned_cols=143 Identities=18% Similarity=0.280 Sum_probs=100.9
Q ss_pred cccChhHHHHHHHhh--------cccccccCCCCCcHHHHHHHHHHhcCCc-----EEEEeccccCChHHH-HHH-----
Q 037859 211 LAMETKKKEEIKKDL--------KKGYLLYGPPGTGKSTMIAAMANFLNYD-----VYDLELTTVQDNSEL-RSL----- 271 (504)
Q Consensus 211 ~~~~~~~k~~i~~~l--------~rg~LL~GPpGtGKTsla~aiA~~l~~~-----i~~l~~~~~~~~~~l-~~l----- 271 (504)
+...+++.+++...+ |..+++|||||||||.+++-++.++.-. ++++||....+...+ .++
T Consensus 19 l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~ 98 (366)
T COG1474 19 LPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLG 98 (366)
T ss_pred ccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcC
Confidence 555667777777666 6669999999999999999999988443 888998776443222 112
Q ss_pred -------------------HHhccCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHH
Q 037859 272 -------------------LIDTSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGL 332 (504)
Q Consensus 272 -------------------~~~~~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~l 332 (504)
+.......||++||+|.++. . ...++-.|
T Consensus 99 ~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~---~-----------------------------~~~~LY~L 146 (366)
T COG1474 99 KVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVD---K-----------------------------DGEVLYSL 146 (366)
T ss_pred CCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhcc---c-----------------------------cchHHHHH
Confidence 22223567999999999852 0 00355556
Q ss_pred hhhhcCccccCCCceEEEEecCCC---CCCChhhhcCCCc-eeEEEecCCCHHHHHHHHHHhc
Q 037859 333 LNFIDGLWSASGEERIIVFTTNYV---DKLDPALIRRGRM-DKHIEMSYCCFEAFKVLAKNYL 391 (504)
Q Consensus 333 L~~lDg~~~~~~~~~ivI~tTN~~---e~Ld~ALlRpGR~-d~~I~~~~p~~e~~~~i~~~~l 391 (504)
+..-+.. ...+++|+.+|.. +.+||.+.+ |+ ..+|.|++.+.+|...|++.-.
T Consensus 147 ~r~~~~~----~~~v~vi~i~n~~~~~~~ld~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~ 203 (366)
T COG1474 147 LRAPGEN----KVKVSIIAVSNDDKFLDYLDPRVKS--SLGPSEIVFPPYTAEELYDILRERV 203 (366)
T ss_pred Hhhcccc----ceeEEEEEEeccHHHHHHhhhhhhh--ccCcceeeeCCCCHHHHHHHHHHHH
Confidence 5544332 3446788888865 578898887 44 3568999999999999988765
No 177
>PRK09087 hypothetical protein; Validated
Probab=98.98 E-value=2e-09 Score=104.32 Aligned_cols=139 Identities=14% Similarity=0.155 Sum_probs=82.9
Q ss_pred ccccccccCh-hH-HHHHHHhh----cccccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccCChHHHHHHHHhccCCe
Q 037859 206 ATFDTLAMET-KK-KEEIKKDL----KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQDNSELRSLLIDTSSKS 279 (504)
Q Consensus 206 ~~f~~~~~~~-~~-k~~i~~~l----~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~~l~~l~~~~~~~~ 279 (504)
.+|++++..+ .. --.++..+ .+.++||||+|+|||+|+++++...+..++ +...+.. .-+ . .....
T Consensus 18 ~~~~~Fi~~~~N~~a~~~l~~~~~~~~~~l~l~G~~GsGKThLl~~~~~~~~~~~i--~~~~~~~-~~~----~-~~~~~ 89 (226)
T PRK09087 18 YGRDDLLVTESNRAAVSLVDHWPNWPSPVVVLAGPVGSGKTHLASIWREKSDALLI--HPNEIGS-DAA----N-AAAEG 89 (226)
T ss_pred CChhceeecCchHHHHHHHHhcccCCCCeEEEECCCCCCHHHHHHHHHHhcCCEEe--cHHHcch-HHH----H-hhhcC
Confidence 5688887533 21 11122222 223899999999999999999988765533 3322211 111 1 11225
Q ss_pred EEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccCCCceEEEEecCCCC--
Q 037859 280 ILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERIIVFTTNYVD-- 357 (504)
Q Consensus 280 Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~~~~ivI~tTN~~e-- 357 (504)
+|+|||+|.+- . ....+-.++|.+. . .+..+||.++..+.
T Consensus 90 ~l~iDDi~~~~---~------------------------------~~~~lf~l~n~~~---~--~g~~ilits~~~p~~~ 131 (226)
T PRK09087 90 PVLIEDIDAGG---F------------------------------DETGLFHLINSVR---Q--AGTSLLMTSRLWPSSW 131 (226)
T ss_pred eEEEECCCCCC---C------------------------------CHHHHHHHHHHHH---h--CCCeEEEECCCChHHh
Confidence 88899999741 0 1122344444432 1 12234444443333
Q ss_pred -CCChhhhcCCCce--eEEEecCCCHHHHHHHHHHhcC
Q 037859 358 -KLDPALIRRGRMD--KHIEMSYCCFEAFKVLAKNYLD 392 (504)
Q Consensus 358 -~Ld~ALlRpGR~d--~~I~~~~p~~e~~~~i~~~~l~ 392 (504)
...|+|+. |+. ..+++..|+.+.+..++++.+.
T Consensus 132 ~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~ 167 (226)
T PRK09087 132 NVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFA 167 (226)
T ss_pred ccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHH
Confidence 23688998 875 7899999999999999998874
No 178
>PRK12377 putative replication protein; Provisional
Probab=98.98 E-value=1.7e-09 Score=105.93 Aligned_cols=63 Identities=25% Similarity=0.426 Sum_probs=47.0
Q ss_pred cccccccCCCCCcHHHHHHHHHHhc---CCcEEEEeccccCC--------hHHHHHHHHhccCCeEEEEecccc
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFL---NYDVYDLELTTVQD--------NSELRSLLIDTSSKSILVIEDIDC 288 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~~~--------~~~l~~l~~~~~~~~Il~iDeiD~ 288 (504)
..+++|+||||||||+|+.|||+++ +..+..+....+.. ......++.......+|+|||+..
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l~~~dLLiIDDlg~ 174 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQELCKVDLLVLDEIGI 174 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCC
Confidence 3679999999999999999999988 56677776654321 112334555567888999999976
No 179
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.95 E-value=1.1e-08 Score=104.01 Aligned_cols=123 Identities=14% Similarity=0.159 Sum_probs=93.3
Q ss_pred cccccccCCCCCcHHHHHHHHHHhcCC------------------------cEEEEecc--ccCChHHHHHHHHhc----
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFLNY------------------------DVYDLELT--TVQDNSELRSLLIDT---- 275 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l~~------------------------~i~~l~~~--~~~~~~~l~~l~~~~---- 275 (504)
+.+|||+||+|+||+++|+++|..+.+ +++.+... ..-.-+.+|.+....
T Consensus 24 ~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~~~~ 103 (325)
T PRK06871 24 HHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVSQHA 103 (325)
T ss_pred ceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHhhcc
Confidence 678999999999999999999988733 24444321 112345666654443
Q ss_pred --cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccCCCceEEEEec
Q 037859 276 --SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERIIVFTT 353 (504)
Q Consensus 276 --~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~~~~ivI~tT 353 (504)
...-|++||++|.+ +....+.||..|+.- ++..++|++|
T Consensus 104 ~~g~~KV~iI~~a~~m-----------------------------------~~~AaNaLLKtLEEP----p~~~~fiL~t 144 (325)
T PRK06871 104 QQGGNKVVYIQGAERL-----------------------------------TEAAANALLKTLEEP----RPNTYFLLQA 144 (325)
T ss_pred ccCCceEEEEechhhh-----------------------------------CHHHHHHHHHHhcCC----CCCeEEEEEE
Confidence 24569999999986 344678899998853 4668999999
Q ss_pred CCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHh
Q 037859 354 NYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNY 390 (504)
Q Consensus 354 N~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~ 390 (504)
+.++.|.|.++. |+ .++.|+.|+.++....+...
T Consensus 145 ~~~~~llpTI~S--RC-~~~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 145 DLSAALLPTIYS--RC-QTWLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred CChHhCchHHHh--hc-eEEeCCCCCHHHHHHHHHHH
Confidence 999999999999 88 68999999998887766654
No 180
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.94 E-value=3.9e-09 Score=115.65 Aligned_cols=158 Identities=23% Similarity=0.333 Sum_probs=98.6
Q ss_pred cceeeecCCCccccccccChhHHHHHHHhh---------cccccccCCCCCcHHHHHHHHHHhcCCcEEE-Ee---cc--
Q 037859 196 KWSHVFFEHPATFDTLAMETKKKEEIKKDL---------KKGYLLYGPPGTGKSTMIAAMANFLNYDVYD-LE---LT-- 260 (504)
Q Consensus 196 ~w~~~~~~~p~~f~~~~~~~~~k~~i~~~l---------~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~-l~---~~-- 260 (504)
.|. --..|..++.++++++..+.+...+ .+.++|+||||||||++++++|+.++..+.. .+ +.
T Consensus 73 pW~--eKyrP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~ 150 (637)
T TIGR00602 73 PWV--EKYKPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQ 150 (637)
T ss_pred chH--HHhCCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhccc
Confidence 464 4557999999999999888877766 2338899999999999999999999865432 11 00
Q ss_pred ---------------cc-CChHHHHHHHHhc------------cCCeEEEEecccccccccccccccccccccccccCcc
Q 037859 261 ---------------TV-QDNSELRSLLIDT------------SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPI 312 (504)
Q Consensus 261 ---------------~~-~~~~~l~~l~~~~------------~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (504)
.. .....+..++..+ ..+.||||||||.++. +
T Consensus 151 ~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~----r---------------- 210 (637)
T TIGR00602 151 KNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFY----R---------------- 210 (637)
T ss_pred ccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhch----h----------------
Confidence 00 1123334433322 3567999999998642 0
Q ss_pred cccccccCCCcchhhHHHHHhh-hhcCccccCCCceEEEEecC-CCC--------------CCChhhhcCCCceeEEEec
Q 037859 313 EKKEKEDGGSKKSKVTLSGLLN-FIDGLWSASGEERIIVFTTN-YVD--------------KLDPALIRRGRMDKHIEMS 376 (504)
Q Consensus 313 ~~~~~~~~~~~~~~~~ls~lL~-~lDg~~~~~~~~~ivI~tTN-~~e--------------~Ld~ALlRpGR~d~~I~~~ 376 (504)
....+..+|. .... . +...+|+++| .+. .|.++|+...|+ .+|.|.
T Consensus 211 ------------~~~~lq~lLr~~~~e---~--~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~Fn 272 (637)
T TIGR00602 211 ------------DTRALHEILRWKYVS---I--GRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFN 272 (637)
T ss_pred ------------hHHHHHHHHHHHhhc---C--CCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeC
Confidence 1113444444 2111 1 1223333332 111 144788853477 589999
Q ss_pred CCCHHHHHHHHHHhcCc
Q 037859 377 YCCFEAFKVLAKNYLDI 393 (504)
Q Consensus 377 ~p~~e~~~~i~~~~l~~ 393 (504)
..+....+..++..+..
T Consensus 273 Pia~t~l~K~L~rIl~~ 289 (637)
T TIGR00602 273 PIAPTIMKKFLNRIVTI 289 (637)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999988888777643
No 181
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.94 E-value=1.2e-08 Score=112.02 Aligned_cols=128 Identities=16% Similarity=0.222 Sum_probs=89.5
Q ss_pred ccccccCCCCCcHHHHHHHHHHhcCC--cEEEEecccc----CChHHHHHHHH-----------hccCCeEEEEeccccc
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANFLNY--DVYDLELTTV----QDNSELRSLLI-----------DTSSKSILVIEDIDCS 289 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~l~~--~i~~l~~~~~----~~~~~l~~l~~-----------~~~~~~Il~iDeiD~~ 289 (504)
.|+||.|+||||||+++++++..+.. ++..+.+... -+.-.+...+. ......+||||||+.+
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~rl 96 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANLL 96 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhhC
Confidence 47999999999999999999998865 4666664211 11111221111 1134579999999986
Q ss_pred ccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcC---------ccccCCCceEEEEecCCCC---
Q 037859 290 LDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDG---------LWSASGEERIIVFTTNYVD--- 357 (504)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg---------~~~~~~~~~ivI~tTN~~e--- 357 (504)
+..+.+.|+..|+. ..........+|+|+|..+
T Consensus 97 -----------------------------------~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g 141 (589)
T TIGR02031 97 -----------------------------------DDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGG 141 (589)
T ss_pred -----------------------------------CHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccC
Confidence 23467778887752 1111123467889999876
Q ss_pred CCChhhhcCCCceeEEEecCC-CHHHHHHHHHHhc
Q 037859 358 KLDPALIRRGRMDKHIEMSYC-CFEAFKVLAKNYL 391 (504)
Q Consensus 358 ~Ld~ALlRpGR~d~~I~~~~p-~~e~~~~i~~~~l 391 (504)
.|+++|+. ||+++|.+.++ ..++|.+|+++++
T Consensus 142 ~L~~~Lld--Rf~l~v~~~~~~~~~er~eil~~~~ 174 (589)
T TIGR02031 142 GLPDHLLD--RLALHVSLEDVASQDLRVEIVRRER 174 (589)
T ss_pred CCCHHHHH--hccCeeecCCCCCHHHHHHHHHHHH
Confidence 79999999 99999999875 6677889988876
No 182
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.91 E-value=3.1e-09 Score=105.80 Aligned_cols=137 Identities=21% Similarity=0.431 Sum_probs=83.2
Q ss_pred cccccccCCCCCcHHHHHHHHHHhcCCc---EEEEeccccCChHHHHHHHHhc-------------cCCeEEEEeccccc
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFLNYD---VYDLELTTVQDNSELRSLLIDT-------------SSKSILVIEDIDCS 289 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l~~~---i~~l~~~~~~~~~~l~~l~~~~-------------~~~~Il~iDeiD~~ 289 (504)
++.+||+||+|||||++++..-..+.-. +..++++...+...+++.+... .+++|+||||++.-
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiDDlN~p 112 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTTSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFIDDLNMP 112 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHHHHHHHHCCCTTECECTTEEEEEESSSEEEEEEETTT-S
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCCHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEecccCCC
Confidence 7889999999999999999877666433 3456666665556666655432 25689999999872
Q ss_pred ccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccCC------CceEEEEecCCCC---CCC
Q 037859 290 LDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASG------EERIIVFTTNYVD---KLD 360 (504)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~------~~~ivI~tTN~~e---~Ld 360 (504)
- . +..+....-..+.++++. .|.++... .++.+|+|+|... .|+
T Consensus 113 ~-----~---------------------d~ygtq~~iElLRQ~i~~-~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is 165 (272)
T PF12775_consen 113 Q-----P---------------------DKYGTQPPIELLRQLIDY-GGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPIS 165 (272)
T ss_dssp -----------------------------TTS--HHHHHHHHHHHC-SEEECTTTTEEEEECSEEEEEEESSTTT--SHH
T ss_pred C-----C---------------------CCCCCcCHHHHHHHHHHh-cCcccCCCcEEEEEeeeEEEEecCCCCCCCCCC
Confidence 1 0 011111122233333321 23333211 3467888888543 488
Q ss_pred hhhhcCCCceeEEEecCCCHHHHHHHHHHhcC
Q 037859 361 PALIRRGRMDKHIEMSYCCFEAFKVLAKNYLD 392 (504)
Q Consensus 361 ~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~ 392 (504)
+.|+| .| ..+.+++|+.+....|+..++.
T Consensus 166 ~R~~r--~f-~i~~~~~p~~~sl~~If~~il~ 194 (272)
T PF12775_consen 166 PRFLR--HF-NILNIPYPSDESLNTIFSSILQ 194 (272)
T ss_dssp HHHHT--TE-EEEE----TCCHHHHHHHHHHH
T ss_pred hHHhh--he-EEEEecCCChHHHHHHHHHHHh
Confidence 99999 88 6899999999988888877653
No 183
>PRK04132 replication factor C small subunit; Provisional
Probab=98.91 E-value=1.1e-08 Score=114.89 Aligned_cols=121 Identities=14% Similarity=0.159 Sum_probs=96.2
Q ss_pred ccccC--CCCCcHHHHHHHHHHhc-----CCcEEEEeccccCChHHHHHHHHhc----c----CCeEEEEeccccccccc
Q 037859 229 YLLYG--PPGTGKSTMIAAMANFL-----NYDVYDLELTTVQDNSELRSLLIDT----S----SKSILVIEDIDCSLDLT 293 (504)
Q Consensus 229 ~LL~G--PpGtGKTsla~aiA~~l-----~~~i~~l~~~~~~~~~~l~~l~~~~----~----~~~Il~iDeiD~~~~~~ 293 (504)
.+..| |++.||||+|.|+|+++ +.+++.+|.++..+.+.++.++... + +.-|++|||+|.+
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~L---- 642 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADAL---- 642 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHHHHHHHHHhcCCcCCCCCEEEEEECcccC----
Confidence 46679 99999999999999998 5689999999866667777766542 1 2369999999996
Q ss_pred ccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccCCCceEEEEecCCCCCCChhhhcCCCceeEE
Q 037859 294 GQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHI 373 (504)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I 373 (504)
+....+.||..|+.. ++...+|++||+++.+.++|++ |+ ..+
T Consensus 643 -------------------------------t~~AQnALLk~lEep----~~~~~FILi~N~~~kIi~tIrS--RC-~~i 684 (846)
T PRK04132 643 -------------------------------TQDAQQALRRTMEMF----SSNVRFILSCNYSSKIIEPIQS--RC-AIF 684 (846)
T ss_pred -------------------------------CHHHHHHHHHHhhCC----CCCeEEEEEeCChhhCchHHhh--hc-eEE
Confidence 123567788888753 3457899999999999999999 88 689
Q ss_pred EecCCCHHHHHHHHHHhc
Q 037859 374 EMSYCCFEAFKVLAKNYL 391 (504)
Q Consensus 374 ~~~~p~~e~~~~i~~~~l 391 (504)
.|..|+.++....++...
T Consensus 685 ~F~~ls~~~i~~~L~~I~ 702 (846)
T PRK04132 685 RFRPLRDEDIAKRLRYIA 702 (846)
T ss_pred eCCCCCHHHHHHHHHHHH
Confidence 999999888777666554
No 184
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.90 E-value=2e-08 Score=101.73 Aligned_cols=122 Identities=15% Similarity=0.178 Sum_probs=92.7
Q ss_pred cccccccCCCCCcHHHHHHHHHHhcCC-----------------------cEEEEeccc---cCChHHHHHHHHhc----
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFLNY-----------------------DVYDLELTT---VQDNSELRSLLIDT---- 275 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l~~-----------------------~i~~l~~~~---~~~~~~l~~l~~~~---- 275 (504)
+.+|||+||.|+||+++|.++|..+.+ +++.+.... .-..+.+|.+....
T Consensus 25 ~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~vdqiR~l~~~~~~~~ 104 (319)
T PRK06090 25 PGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSITVEQIRQCNRLAQESS 104 (319)
T ss_pred ceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCCHHHHHHHHHHHhhCc
Confidence 678999999999999999999987732 355554321 12335566554332
Q ss_pred --cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccCCCceEEEEec
Q 037859 276 --SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERIIVFTT 353 (504)
Q Consensus 276 --~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~~~~ivI~tT 353 (504)
...-|++||++|.+ +....+.||..++.- +++.++|++|
T Consensus 105 ~~~~~kV~iI~~ae~m-----------------------------------~~~AaNaLLKtLEEP----p~~t~fiL~t 145 (319)
T PRK06090 105 QLNGYRLFVIEPADAM-----------------------------------NESASNALLKTLEEP----APNCLFLLVT 145 (319)
T ss_pred ccCCceEEEecchhhh-----------------------------------CHHHHHHHHHHhcCC----CCCeEEEEEE
Confidence 23579999999986 344678899999853 4568999999
Q ss_pred CCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHH
Q 037859 354 NYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKN 389 (504)
Q Consensus 354 N~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~ 389 (504)
+.++.|-|.+++ |+ ..+.|+.|+.++....+..
T Consensus 146 ~~~~~lLpTI~S--RC-q~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 146 HNQKRLLPTIVS--RC-QQWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred CChhhChHHHHh--cc-eeEeCCCCCHHHHHHHHHH
Confidence 999999999999 98 6899999999888776654
No 185
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.90 E-value=1.9e-08 Score=102.01 Aligned_cols=122 Identities=15% Similarity=0.222 Sum_probs=89.7
Q ss_pred cccccccCCCCCcHHHHHHHHHHhcCC---------------------cEEEEe--cccc-------CChHHHHHHHHhc
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFLNY---------------------DVYDLE--LTTV-------QDNSELRSLLIDT 275 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l~~---------------------~i~~l~--~~~~-------~~~~~l~~l~~~~ 275 (504)
+.+|||+||+|+||+++|.++|..+.+ +++.+. ...- -.-+.+|.+....
T Consensus 26 ~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~~~ 105 (319)
T PRK08769 26 GHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQKL 105 (319)
T ss_pred ceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHHHH
Confidence 668999999999999999999987632 233342 1100 1234555554433
Q ss_pred c------CCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccCCCceEE
Q 037859 276 S------SKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERII 349 (504)
Q Consensus 276 ~------~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~~~~iv 349 (504)
. ..-|++||++|.+ +....+.||..|+.- ++..+|
T Consensus 106 ~~~p~~g~~kV~iI~~ae~m-----------------------------------~~~AaNaLLKtLEEP----p~~~~f 146 (319)
T PRK08769 106 ALTPQYGIAQVVIVDPADAI-----------------------------------NRAACNALLKTLEEP----SPGRYL 146 (319)
T ss_pred hhCcccCCcEEEEeccHhhh-----------------------------------CHHHHHHHHHHhhCC----CCCCeE
Confidence 2 3469999999986 334678899988853 355789
Q ss_pred EEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHH
Q 037859 350 VFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKN 389 (504)
Q Consensus 350 I~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~ 389 (504)
|++|+.++.|.|.++. |+ ..|.|+.|+.++....+..
T Consensus 147 iL~~~~~~~lLpTIrS--RC-q~i~~~~~~~~~~~~~L~~ 183 (319)
T PRK08769 147 WLISAQPARLPATIRS--RC-QRLEFKLPPAHEALAWLLA 183 (319)
T ss_pred EEEECChhhCchHHHh--hh-eEeeCCCcCHHHHHHHHHH
Confidence 9999999999999999 98 6899999999887766654
No 186
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.89 E-value=1.5e-08 Score=103.69 Aligned_cols=122 Identities=15% Similarity=0.169 Sum_probs=92.9
Q ss_pred cccccccCCCCCcHHHHHHHHHHhcCC------------------------cEEEEeccc---cCChHHHHHHHHhc---
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFLNY------------------------DVYDLELTT---VQDNSELRSLLIDT--- 275 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l~~------------------------~i~~l~~~~---~~~~~~l~~l~~~~--- 275 (504)
+.+|||+||+|+||+++|.++|..+-+ +++.+.... .-.-+++|.+....
T Consensus 24 ~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~ 103 (334)
T PRK07993 24 HHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLYEH 103 (334)
T ss_pred ceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHHhhc
Confidence 678999999999999999999998732 344443221 12345666655443
Q ss_pred ---cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccCCCceEEEEe
Q 037859 276 ---SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERIIVFT 352 (504)
Q Consensus 276 ---~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~~~~ivI~t 352 (504)
...-|++||++|.+ +....+.||..|+.- ++..++|++
T Consensus 104 ~~~g~~kV~iI~~ae~m-----------------------------------~~~AaNaLLKtLEEP----p~~t~fiL~ 144 (334)
T PRK07993 104 ARLGGAKVVWLPDAALL-----------------------------------TDAAANALLKTLEEP----PENTWFFLA 144 (334)
T ss_pred cccCCceEEEEcchHhh-----------------------------------CHHHHHHHHHHhcCC----CCCeEEEEE
Confidence 24579999999986 334678899999853 466899999
Q ss_pred cCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHH
Q 037859 353 TNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKN 389 (504)
Q Consensus 353 TN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~ 389 (504)
|++++.|.|.+++ |+ ..+.|+.|+.++....+..
T Consensus 145 t~~~~~lLpTIrS--RC-q~~~~~~~~~~~~~~~L~~ 178 (334)
T PRK07993 145 CREPARLLATLRS--RC-RLHYLAPPPEQYALTWLSR 178 (334)
T ss_pred ECChhhChHHHHh--cc-ccccCCCCCHHHHHHHHHH
Confidence 9999999999999 88 4789999999888776654
No 187
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.85 E-value=1.5e-08 Score=103.46 Aligned_cols=122 Identities=15% Similarity=0.264 Sum_probs=89.2
Q ss_pred cccccccCCCCCcHHHHHHHHHHhcCC-------------------------cEEEEeccc----------cCChHHHHH
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFLNY-------------------------DVYDLELTT----------VQDNSELRS 270 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l~~-------------------------~i~~l~~~~----------~~~~~~l~~ 270 (504)
+.+|||+||+|+|||++|+++|+.+.+ +++.++... .-.-+.+|.
T Consensus 21 ~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~iR~ 100 (325)
T PRK08699 21 PNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAVRE 100 (325)
T ss_pred ceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHHHH
Confidence 678999999999999999999998732 355555421 013455666
Q ss_pred HHHhc------cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccCC
Q 037859 271 LLIDT------SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASG 344 (504)
Q Consensus 271 l~~~~------~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~ 344 (504)
+.... ...-|++||++|.+ +....+.||..|+...
T Consensus 101 l~~~~~~~p~~~~~kV~iiEp~~~L-----------------------------------d~~a~naLLk~LEep~---- 141 (325)
T PRK08699 101 IIDNVYLTSVRGGLRVILIHPAESM-----------------------------------NLQAANSLLKVLEEPP---- 141 (325)
T ss_pred HHHHHhhCcccCCceEEEEechhhC-----------------------------------CHHHHHHHHHHHHhCc----
Confidence 65443 24568999999986 2235567777776542
Q ss_pred CceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHH
Q 037859 345 EERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKN 389 (504)
Q Consensus 345 ~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~ 389 (504)
.+..+|++|++++.+.|.+.+ |+ .++.|+.|+.++....+..
T Consensus 142 ~~~~~Ilvth~~~~ll~ti~S--Rc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 142 PQVVFLLVSHAADKVLPTIKS--RC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred CCCEEEEEeCChHhChHHHHH--Hh-hhhcCCCCCHHHHHHHHHh
Confidence 336788899999999999999 88 6899999999887766654
No 188
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.84 E-value=3.2e-08 Score=106.30 Aligned_cols=142 Identities=17% Similarity=0.218 Sum_probs=90.0
Q ss_pred CccccccccChhHHHHHHHhhc--ccccccCCCCCcHHHHHHHHHHhcCCc--EEEEecccc------------------
Q 037859 205 PATFDTLAMETKKKEEIKKDLK--KGYLLYGPPGTGKSTMIAAMANFLNYD--VYDLELTTV------------------ 262 (504)
Q Consensus 205 p~~f~~~~~~~~~k~~i~~~l~--rg~LL~GPpGtGKTsla~aiA~~l~~~--i~~l~~~~~------------------ 262 (504)
+..|+.+.++...++.+.-.+. ..++|+||||||||++++++++.+.-. -..++...+
T Consensus 188 ~~d~~dv~Gq~~~~~al~~aa~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g~~~~~~~~~~~Pf 267 (499)
T TIGR00368 188 DLDLKDIKGQQHAKRALEIAAAGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVGKLIDRKQIKQRPF 267 (499)
T ss_pred CCCHHHhcCcHHHHhhhhhhccCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchhhhccccccccCCc
Confidence 3478999999888877776663 449999999999999999999754110 001111111
Q ss_pred -------------CChHHHHHHHHhccCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHH
Q 037859 263 -------------QDNSELRSLLIDTSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTL 329 (504)
Q Consensus 263 -------------~~~~~l~~l~~~~~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 329 (504)
++....+.-......+.+|||||++.+ +...+
T Consensus 268 ~~p~~s~s~~~~~ggg~~~~pG~i~lA~~GvLfLDEi~e~-----------------------------------~~~~~ 312 (499)
T TIGR00368 268 RSPHHSASKPALVGGGPIPLPGEISLAHNGVLFLDELPEF-----------------------------------KRSVL 312 (499)
T ss_pred cccccccchhhhhCCccccchhhhhccCCCeEecCChhhC-----------------------------------CHHHH
Confidence 000001111122346789999999975 12345
Q ss_pred HHHhhhhcCcc---------ccCCCceEEEEecCCC------C-----------------CCChhhhcCCCceeEEEecC
Q 037859 330 SGLLNFIDGLW---------SASGEERIIVFTTNYV------D-----------------KLDPALIRRGRMDKHIEMSY 377 (504)
Q Consensus 330 s~lL~~lDg~~---------~~~~~~~ivI~tTN~~------e-----------------~Ld~ALlRpGR~d~~I~~~~ 377 (504)
..|+..|+.-. ........+|+|||.- + +|..+|+. |||.++.++.
T Consensus 313 ~~L~~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~ 390 (499)
T TIGR00368 313 DALREPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPL 390 (499)
T ss_pred HHHHHHHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcC
Confidence 55665553211 0112346788999852 1 58999999 9999999998
Q ss_pred CCHHHH
Q 037859 378 CCFEAF 383 (504)
Q Consensus 378 p~~e~~ 383 (504)
++.++.
T Consensus 391 ~~~~~l 396 (499)
T TIGR00368 391 LPPEKL 396 (499)
T ss_pred CCHHHH
Confidence 876543
No 189
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.81 E-value=9.6e-09 Score=103.91 Aligned_cols=63 Identities=29% Similarity=0.444 Sum_probs=48.2
Q ss_pred cccccccCCCCCcHHHHHHHHHHhc---CCcEEEEeccccC-------ChHHHHHHHHhccCCeEEEEecccc
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFL---NYDVYDLELTTVQ-------DNSELRSLLIDTSSKSILVIEDIDC 288 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~~-------~~~~l~~l~~~~~~~~Il~iDeiD~ 288 (504)
.+|++||||||||||.|+.|||+++ |+.+..+.+..+. ....+...+.......+|+||||..
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~~~dlLiIDDiG~ 228 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVKEAPVLMLDDIGA 228 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhcCCCEEEEecCCC
Confidence 3589999999999999999999998 6777777665431 1122445555567889999999976
No 190
>PRK09183 transposase/IS protein; Provisional
Probab=98.80 E-value=5.8e-09 Score=103.22 Aligned_cols=64 Identities=19% Similarity=0.301 Sum_probs=45.1
Q ss_pred cccccccCCCCCcHHHHHHHHHHhc---CCcEEEEeccccCC-------hHHHHHHHHh-ccCCeEEEEeccccc
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFL---NYDVYDLELTTVQD-------NSELRSLLID-TSSKSILVIEDIDCS 289 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~~~-------~~~l~~l~~~-~~~~~Il~iDeiD~~ 289 (504)
..+++|+||||||||+|+.+++..+ |+.+.+++...+.. ...+...+.. ...+.+++|||++..
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~~~~~dlLiiDdlg~~ 176 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYL 176 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHHhcCCCEEEEcccccC
Confidence 4568999999999999999997664 67777776554320 0123344443 456789999999863
No 191
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=3e-08 Score=103.28 Aligned_cols=134 Identities=21% Similarity=0.334 Sum_probs=92.7
Q ss_pred ccccccCCCCCcHHHHHHHHHHhcCCcEEEEecc-cc---CC---hHHHHHHHHhcc--CCeEEEEeccccccccccccc
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELT-TV---QD---NSELRSLLIDTS--SKSILVIEDIDCSLDLTGQRE 297 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~-~~---~~---~~~l~~l~~~~~--~~~Il~iDeiD~~~~~~~~~~ 297 (504)
..+||+||||+|||+||.-+|...++|++.+-.. .+ .. ...+.+.|..+- .-+||++|||+.+++...
T Consensus 539 vSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~vp--- 615 (744)
T KOG0741|consen 539 VSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDYVP--- 615 (744)
T ss_pred eEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhcccc---
Confidence 4489999999999999999999999999876332 22 11 134678888773 469999999999886432
Q ss_pred ccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccCCCceEEE-EecCCCCCCCh-hhhcCCCceeEEEe
Q 037859 298 KKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERIIV-FTTNYVDKLDP-ALIRRGRMDKHIEM 375 (504)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~~~~ivI-~tTN~~e~Ld~-ALlRpGR~d~~I~~ 375 (504)
-+...+..++..|+..+.... ..+.+++| +||...+-|.. .++. .|+-.|++
T Consensus 616 ----------------------IGPRfSN~vlQaL~VllK~~p--pkg~kLli~~TTS~~~vL~~m~i~~--~F~~~i~V 669 (744)
T KOG0741|consen 616 ----------------------IGPRFSNLVLQALLVLLKKQP--PKGRKLLIFGTTSRREVLQEMGILD--CFSSTIHV 669 (744)
T ss_pred ----------------------cCchhhHHHHHHHHHHhccCC--CCCceEEEEecccHHHHHHHcCHHH--hhhheeec
Confidence 234456778888888887653 23345555 56655544432 4455 78888999
Q ss_pred cCCCH-HHHHHHHHH
Q 037859 376 SYCCF-EAFKVLAKN 389 (504)
Q Consensus 376 ~~p~~-e~~~~i~~~ 389 (504)
|..+. ++...++..
T Consensus 670 pnl~~~~~~~~vl~~ 684 (744)
T KOG0741|consen 670 PNLTTGEQLLEVLEE 684 (744)
T ss_pred CccCchHHHHHHHHH
Confidence 88755 566555554
No 192
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.80 E-value=4e-08 Score=99.54 Aligned_cols=55 Identities=27% Similarity=0.413 Sum_probs=40.3
Q ss_pred ccccccChhHHHHHHH---hh------cccccccCCCCCcHHHHHHHHHHhcC--CcEEEEecccc
Q 037859 208 FDTLAMETKKKEEIKK---DL------KKGYLLYGPPGTGKSTMIAAMANFLN--YDVYDLELTTV 262 (504)
Q Consensus 208 f~~~~~~~~~k~~i~~---~l------~rg~LL~GPpGtGKTsla~aiA~~l~--~~i~~l~~~~~ 262 (504)
.+.++++.+.+++.-- .+ .|++||.||||||||.||-+||.+|| .|++.++.+.+
T Consensus 23 ~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEi 88 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEI 88 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG
T ss_pred cccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEccccee
Confidence 4578888888765332 22 78999999999999999999999997 67777777665
No 193
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.79 E-value=5.2e-08 Score=99.74 Aligned_cols=147 Identities=18% Similarity=0.227 Sum_probs=96.6
Q ss_pred ccccccChhHHHHHHHhh------cccccccCCCCCcHHHHHHHHHHhc---CCcEEEEeccccCChHHHHH-HHH----
Q 037859 208 FDTLAMETKKKEEIKKDL------KKGYLLYGPPGTGKSTMIAAMANFL---NYDVYDLELTTVQDNSELRS-LLI---- 273 (504)
Q Consensus 208 f~~~~~~~~~k~~i~~~l------~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~~~~~~l~~-l~~---- 273 (504)
|+.+++.....+.+++.+ ...+||+|++||||+++|++|-... +.+++.++|..+.. ..+.. +|.
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~-~~~~~~lfg~~~~ 83 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNE-NLLDSELFGHEAG 83 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCH-HHHHHHHcccccc
Confidence 556677776667777666 5669999999999999999997654 46899999998753 33332 221
Q ss_pred -------------hccCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCcc
Q 037859 274 -------------DTSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLW 340 (504)
Q Consensus 274 -------------~~~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~ 340 (504)
.......|||||||.+ +......|++.++.-.
T Consensus 84 ~~~g~~~~~~g~l~~a~gGtL~l~~i~~L-----------------------------------~~~~Q~~L~~~l~~~~ 128 (326)
T PRK11608 84 AFTGAQKRHPGRFERADGGTLFLDELATA-----------------------------------PMLVQEKLLRVIEYGE 128 (326)
T ss_pred ccCCcccccCCchhccCCCeEEeCChhhC-----------------------------------CHHHHHHHHHHHhcCc
Confidence 2234678999999986 1234555666664311
Q ss_pred -ccCC------CceEEEEecCCC-------CCCChhhhcCCCc-eeEEEecCCC--HHHHHHHHHHhcC
Q 037859 341 -SASG------EERIIVFTTNYV-------DKLDPALIRRGRM-DKHIEMSYCC--FEAFKVLAKNYLD 392 (504)
Q Consensus 341 -~~~~------~~~ivI~tTN~~-------e~Ld~ALlRpGR~-d~~I~~~~p~--~e~~~~i~~~~l~ 392 (504)
...+ ..+.||+||+.. ..+.+.|.. || ...|.+|... .++...|+..|+.
T Consensus 129 ~~~~g~~~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~~~~i~lPpLReR~eDI~~L~~~fl~ 195 (326)
T PRK11608 129 LERVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLD--RLAFDVVQLPPLRERQSDIMLMAEHFAI 195 (326)
T ss_pred EEeCCCCceeeccEEEEEeCchhHHHHHHcCCchHHHHH--hcCCCEEECCChhhhhhhHHHHHHHHHH
Confidence 1101 235677777653 356688888 88 4566776653 3566677777763
No 194
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.79 E-value=2.4e-08 Score=94.47 Aligned_cols=140 Identities=18% Similarity=0.270 Sum_probs=91.7
Q ss_pred ecCCCccccccccChhHHHHHHHhhcc----cccccCCCCCcHHHHHHHHHHhc-C--C--cEEEEeccccCChHHHH--
Q 037859 201 FFEHPATFDTLAMETKKKEEIKKDLKK----GYLLYGPPGTGKSTMIAAMANFL-N--Y--DVYDLELTTVQDNSELR-- 269 (504)
Q Consensus 201 ~~~~p~~f~~~~~~~~~k~~i~~~l~r----g~LL~GPpGtGKTsla~aiA~~l-~--~--~i~~l~~~~~~~~~~l~-- 269 (504)
.-.+|..+.++++.++..+++--..+. .+++.||||||||+-+.++|++| | + .+..++.++-.+-+-+|
T Consensus 19 eKYrP~~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvVRn~ 98 (333)
T KOG0991|consen 19 EKYRPSVLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVRNK 98 (333)
T ss_pred HhhCchHHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHHHHHH
Confidence 345688899999999887776655533 38999999999999999999987 3 2 25566666544444444
Q ss_pred -HHHHhc------cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCcccc
Q 037859 270 -SLLIDT------SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSA 342 (504)
Q Consensus 270 -~l~~~~------~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~ 342 (504)
+.|.+. .+.-||++||+|++-. .. ...|-..|+=..+
T Consensus 99 IK~FAQ~kv~lp~grhKIiILDEADSMT~--------------------------------gA---QQAlRRtMEiyS~- 142 (333)
T KOG0991|consen 99 IKMFAQKKVTLPPGRHKIIILDEADSMTA--------------------------------GA---QQALRRTMEIYSN- 142 (333)
T ss_pred HHHHHHhhccCCCCceeEEEeeccchhhh--------------------------------HH---HHHHHHHHHHHcc-
Confidence 334433 1346999999998621 11 1222333332222
Q ss_pred CCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHH
Q 037859 343 SGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEA 382 (504)
Q Consensus 343 ~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~ 382 (504)
..-+.+++|..+++=+.+.. |+ -.+.++..+.++
T Consensus 143 ---ttRFalaCN~s~KIiEPIQS--RC-AiLRysklsd~q 176 (333)
T KOG0991|consen 143 ---TTRFALACNQSEKIIEPIQS--RC-AILRYSKLSDQQ 176 (333)
T ss_pred ---cchhhhhhcchhhhhhhHHh--hh-HhhhhcccCHHH
Confidence 23478899999998888888 76 345666655544
No 195
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.77 E-value=1.8e-07 Score=93.51 Aligned_cols=54 Identities=30% Similarity=0.505 Sum_probs=39.8
Q ss_pred cccccChhHHHH---HHHhh------cccccccCCCCCcHHHHHHHHHHhcC--CcEEEEecccc
Q 037859 209 DTLAMETKKKEE---IKKDL------KKGYLLYGPPGTGKSTMIAAMANFLN--YDVYDLELTTV 262 (504)
Q Consensus 209 ~~~~~~~~~k~~---i~~~l------~rg~LL~GPpGtGKTsla~aiA~~l~--~~i~~l~~~~~ 262 (504)
+.++++.+.+++ |++.+ .||+|+.||||||||.||-+||.+|| .|+..++.+.+
T Consensus 39 dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEi 103 (450)
T COG1224 39 DGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEI 103 (450)
T ss_pred CcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeecccee
Confidence 456677666653 22333 78999999999999999999999997 45566655554
No 196
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=2.1e-08 Score=98.78 Aligned_cols=65 Identities=32% Similarity=0.466 Sum_probs=53.9
Q ss_pred cccccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccC-------Ch-HHHHHHHHhc------cCCeEEEEecccccc
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQ-------DN-SELRSLLIDT------SSKSILVIEDIDCSL 290 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~-------~~-~~l~~l~~~~------~~~~Il~iDeiD~~~ 290 (504)
+..+||.||.|||||.||+.+|+.++.|+-.-|++.+. +- .-|.+++..+ .++.||+|||||.+.
T Consensus 97 KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIa 175 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIA 175 (408)
T ss_pred eccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhh
Confidence 57899999999999999999999999999998888763 11 2355666654 478999999999973
No 197
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.77 E-value=3.6e-08 Score=91.15 Aligned_cols=75 Identities=16% Similarity=0.228 Sum_probs=53.0
Q ss_pred hhHHHHHHHhh------cccccccCCCCCcHHHHHHHHHHhc---CCcEEEEeccccCChHHHHHHHHhc----------
Q 037859 215 TKKKEEIKKDL------KKGYLLYGPPGTGKSTMIAAMANFL---NYDVYDLELTTVQDNSELRSLLIDT---------- 275 (504)
Q Consensus 215 ~~~k~~i~~~l------~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~~~~~~l~~l~~~~---------- 275 (504)
....+++++.+ +..+||+|++||||+.+|++|-+.. +.|++.++|+.+..+.--..+|...
T Consensus 5 s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~~~~~ 84 (168)
T PF00158_consen 5 SPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGHEKGAFTGARSD 84 (168)
T ss_dssp SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEBCSSSSTTTSSE
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhccccccccccccc
Confidence 33444444444 6779999999999999999998865 4689999999885433233455321
Q ss_pred -------cCCeEEEEeccccc
Q 037859 276 -------SSKSILVIEDIDCS 289 (504)
Q Consensus 276 -------~~~~Il~iDeiD~~ 289 (504)
.....|||||||.+
T Consensus 85 ~~G~l~~A~~GtL~Ld~I~~L 105 (168)
T PF00158_consen 85 KKGLLEQANGGTLFLDEIEDL 105 (168)
T ss_dssp BEHHHHHTTTSEEEEETGGGS
T ss_pred cCCceeeccceEEeecchhhh
Confidence 35679999999986
No 198
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.75 E-value=5.4e-08 Score=99.64 Aligned_cols=129 Identities=19% Similarity=0.247 Sum_probs=84.1
Q ss_pred cccccccCCCCCcHHHHHHHHHHhc---CCcEEEEeccccCChHHHHH-HHH-----------------hccCCeEEEEe
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFL---NYDVYDLELTTVQDNSELRS-LLI-----------------DTSSKSILVIE 284 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~~~~~~l~~-l~~-----------------~~~~~~Il~iD 284 (504)
...+||+|++||||+++|++|-... +.+++.++|..+.. ..+.. +|. +......||||
T Consensus 22 ~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~-~~l~~~lfG~~~g~~~ga~~~~~G~~~~a~gGtL~Ld 100 (329)
T TIGR02974 22 DRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSE-NLLDSELFGHEAGAFTGAQKRHQGRFERADGGTLFLD 100 (329)
T ss_pred CCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCCh-HHHHHHHhccccccccCcccccCCchhhCCCCEEEeC
Confidence 5669999999999999999997654 46899999998753 22322 221 22356899999
Q ss_pred cccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCcc-c------cCCCceEEEEecCCC-
Q 037859 285 DIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLW-S------ASGEERIIVFTTNYV- 356 (504)
Q Consensus 285 eiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~-~------~~~~~~ivI~tTN~~- 356 (504)
|||.+ +......|+..|+.-. . ....++.+|+|||..
T Consensus 101 ei~~L-----------------------------------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l 145 (329)
T TIGR02974 101 ELATA-----------------------------------SLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADL 145 (329)
T ss_pred ChHhC-----------------------------------CHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhH
Confidence 99986 1234555666664211 0 111235678888743
Q ss_pred ------CCCChhhhcCCCce-eEEEecCCC--HHHHHHHHHHhcC
Q 037859 357 ------DKLDPALIRRGRMD-KHIEMSYCC--FEAFKVLAKNYLD 392 (504)
Q Consensus 357 ------e~Ld~ALlRpGR~d-~~I~~~~p~--~e~~~~i~~~~l~ 392 (504)
..+.+.|.. |+. ..|.+|... .++...|++.|+.
T Consensus 146 ~~~~~~g~fr~dL~~--rl~~~~i~lPpLReR~eDI~~L~~~fl~ 188 (329)
T TIGR02974 146 PALAAEGRFRADLLD--RLAFDVITLPPLRERQEDIMLLAEHFAI 188 (329)
T ss_pred HHHhhcCchHHHHHH--HhcchhcCCCchhhhhhhHHHHHHHHHH
Confidence 345677887 773 456666553 4566677777763
No 199
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.74 E-value=4.5e-09 Score=98.15 Aligned_cols=63 Identities=29% Similarity=0.574 Sum_probs=45.0
Q ss_pred cccccccCCCCCcHHHHHHHHHHhc---CCcEEEEecccc-------CChHHHHHHHHhccCCeEEEEecccc
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFL---NYDVYDLELTTV-------QDNSELRSLLIDTSSKSILVIEDIDC 288 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~-------~~~~~l~~l~~~~~~~~Il~iDeiD~ 288 (504)
+.|++|+||||||||.||.|+|+++ |+.+++++...+ .......+.+.......+|+|||+-.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~~dlLilDDlG~ 119 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLKRVDLLILDDLGY 119 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHTSSCEEEETCTS
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccccccEecccccce
Confidence 6889999999999999999999876 788888877654 11222344555556778999999954
No 200
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.74 E-value=5.4e-08 Score=99.86 Aligned_cols=151 Identities=19% Similarity=0.269 Sum_probs=101.6
Q ss_pred ccccccccChhHHHHHHHhh----cccccccCCCCCcHHHHHHHHHHhcCCcEE--------------------------
Q 037859 206 ATFDTLAMETKKKEEIKKDL----KKGYLLYGPPGTGKSTMIAAMANFLNYDVY-------------------------- 255 (504)
Q Consensus 206 ~~f~~~~~~~~~k~~i~~~l----~rg~LL~GPpGtGKTsla~aiA~~l~~~i~-------------------------- 255 (504)
-+|..+++++..|..++-.. -.|+|+-|+.|||||++++|||..|.--..
T Consensus 14 ~pf~aivGqd~lk~aL~l~av~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~~~c~~c~~k~~e 93 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNAVDPQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPEEMCDECRAKGDE 93 (423)
T ss_pred cchhhhcCchHHHHHHhhhhcccccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChhhhhHHHHhhccc
Confidence 34677788888887776555 467999999999999999999998731110
Q ss_pred ------------EEeccccCChH------HHHHHHHh-----------ccCCeEEEEecccccccccccccccccccccc
Q 037859 256 ------------DLELTTVQDNS------ELRSLLID-----------TSSKSILVIEDIDCSLDLTGQREKKKEKDEDK 306 (504)
Q Consensus 256 ------------~l~~~~~~~~~------~l~~l~~~-----------~~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~ 306 (504)
.+++....+.. ++.+.+.. ..++.|++|||+..+-
T Consensus 94 ~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~---------------- 157 (423)
T COG1239 94 LEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLD---------------- 157 (423)
T ss_pred cccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEecccccc----------------
Confidence 11111111111 12233321 1367899999998752
Q ss_pred cccCcccccccccCCCcchhhHHHHHhhhh---------cCccccCCCceEEEEecCCCC-CCChhhhcCCCceeEEEec
Q 037859 307 EEKNPIEKKEKEDGGSKKSKVTLSGLLNFI---------DGLWSASGEERIIVFTTNYVD-KLDPALIRRGRMDKHIEMS 376 (504)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~ls~lL~~l---------Dg~~~~~~~~~ivI~tTN~~e-~Ld~ALlRpGR~d~~I~~~ 376 (504)
...+..||+.+ +|+.-...-..++|+|+|..+ .|-|-|+. ||..+|.+.
T Consensus 158 -------------------d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~ 216 (423)
T COG1239 158 -------------------DHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTH 216 (423)
T ss_pred -------------------HHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeecc
Confidence 23556666654 444333445578999999775 68899999 999999999
Q ss_pred CC-CHHHHHHHHHHhcCc
Q 037859 377 YC-CFEAFKVLAKNYLDI 393 (504)
Q Consensus 377 ~p-~~e~~~~i~~~~l~~ 393 (504)
+| +.+++..|.++-+..
T Consensus 217 ~~~~~~~rv~Ii~r~~~f 234 (423)
T COG1239 217 YPLDLEERVEIIRRRLAF 234 (423)
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 88 567788887765543
No 201
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.74 E-value=8.2e-08 Score=104.89 Aligned_cols=169 Identities=18% Similarity=0.185 Sum_probs=107.5
Q ss_pred ccccccccChhHHHHHHHhh------cccccccCCCCCcHHHHHHHHHHhc---CCcEEEEeccccCChHHHHH-HHH--
Q 037859 206 ATFDTLAMETKKKEEIKKDL------KKGYLLYGPPGTGKSTMIAAMANFL---NYDVYDLELTTVQDNSELRS-LLI-- 273 (504)
Q Consensus 206 ~~f~~~~~~~~~k~~i~~~l------~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~~~~~~l~~-l~~-- 273 (504)
..|+.+++.....+++++.+ ...+||+|++||||+++|++|.... +.+++.++|..+.. ..+.. +|.
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~-~~~~~~lfg~~ 271 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSE-TLLESELFGHE 271 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCH-HHHHHHHcCCC
Confidence 46788888888888888777 4569999999999999999998875 56899999998843 23332 222
Q ss_pred ---------------hccCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcC
Q 037859 274 ---------------DTSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDG 338 (504)
Q Consensus 274 ---------------~~~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg 338 (504)
.......|||||||.+ +......|+..++.
T Consensus 272 ~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L-----------------------------------~~~~Q~~Ll~~l~~ 316 (534)
T TIGR01817 272 KGAFTGAIAQRKGRFELADGGTLFLDEIGEI-----------------------------------SPAFQAKLLRVLQE 316 (534)
T ss_pred CCccCCCCcCCCCcccccCCCeEEEechhhC-----------------------------------CHHHHHHHHHHHhc
Confidence 1234679999999986 12345566666643
Q ss_pred cc-ccCC------CceEEEEecCCC-------CCCChhhhcCCCce-eEEEecCCC--HHHHHHHHHHhcCcCCcchHHH
Q 037859 339 LW-SASG------EERIIVFTTNYV-------DKLDPALIRRGRMD-KHIEMSYCC--FEAFKVLAKNYLDIDSHELYAV 401 (504)
Q Consensus 339 ~~-~~~~------~~~ivI~tTN~~-------e~Ld~ALlRpGR~d-~~I~~~~p~--~e~~~~i~~~~l~~~~~~~~~~ 401 (504)
-. ...+ ..+.+|+|||.. ..+.+.|.. |+. ..|.+|... .++...|++.|+... ...
T Consensus 317 ~~~~~~~~~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLreR~eDi~~L~~~~l~~~----~~~ 390 (534)
T TIGR01817 317 GEFERVGGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYY--RINVVPIFLPPLRERREDIPLLAEAFLEKF----NRE 390 (534)
T ss_pred CcEEECCCCceEeecEEEEEeCCCCHHHHHHcCCCCHHHHH--HhcCCeeeCCCcccccccHHHHHHHHHHHH----HHH
Confidence 21 1111 135677777643 234455555 553 456676654 466777888887421 111
Q ss_pred HhcCccCCCCCHHHHHHh
Q 037859 402 IESMPAETNMTPADVAEN 419 (504)
Q Consensus 402 i~~l~~~~~~s~a~i~~~ 419 (504)
.-...+++++-+..+
T Consensus 391 ---~~~~~~~s~~a~~~L 405 (534)
T TIGR01817 391 ---NGRPLTITPSAIRVL 405 (534)
T ss_pred ---cCCCCCCCHHHHHHH
Confidence 111256888766543
No 202
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.73 E-value=2.3e-08 Score=107.01 Aligned_cols=139 Identities=20% Similarity=0.292 Sum_probs=88.2
Q ss_pred cccccccChhHHHHHHHhh--cccccccCCCCCcHHHHHHHHHHhcCCcE--EEEeccccC-------------------
Q 037859 207 TFDTLAMETKKKEEIKKDL--KKGYLLYGPPGTGKSTMIAAMANFLNYDV--YDLELTTVQ------------------- 263 (504)
Q Consensus 207 ~f~~~~~~~~~k~~i~~~l--~rg~LL~GPpGtGKTsla~aiA~~l~~~i--~~l~~~~~~------------------- 263 (504)
.|..+.++...++.+.-.+ ...++|+||||||||++++.+++.+.-.- ..++.+.+.
T Consensus 189 d~~~v~Gq~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~~rPfr~ 268 (506)
T PRK09862 189 DLSDVIGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRS 268 (506)
T ss_pred CeEEEECcHHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcCCCCccC
Confidence 5666667666666654444 44499999999999999999998663110 011111110
Q ss_pred --ChHHHHHHH----------HhccCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHH
Q 037859 264 --DNSELRSLL----------IDTSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSG 331 (504)
Q Consensus 264 --~~~~l~~l~----------~~~~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ 331 (504)
.......++ .......++||||++.+ ...++..
T Consensus 269 ph~~~s~~~l~GGg~~~~pG~l~~A~gGvLfLDEi~e~-----------------------------------~~~~~~~ 313 (506)
T PRK09862 269 PHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEF-----------------------------------ERRTLDA 313 (506)
T ss_pred CCccchHHHHhCCCceehhhHhhhccCCEEecCCchhC-----------------------------------CHHHHHH
Confidence 000111222 23346789999999874 2346677
Q ss_pred Hhhhhc-Ccc--cc------CCCceEEEEecCCCC---------------------CCChhhhcCCCceeEEEecCCCHH
Q 037859 332 LLNFID-GLW--SA------SGEERIIVFTTNYVD---------------------KLDPALIRRGRMDKHIEMSYCCFE 381 (504)
Q Consensus 332 lL~~lD-g~~--~~------~~~~~ivI~tTN~~e---------------------~Ld~ALlRpGR~d~~I~~~~p~~e 381 (504)
|++.|+ |.. +. ......+|+|+|... +|..+++. |||+++.+++++.+
T Consensus 314 L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~ 391 (506)
T PRK09862 314 LREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPG 391 (506)
T ss_pred HHHHHHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHH
Confidence 777663 221 01 123468899999753 57889999 99999999999876
Q ss_pred H
Q 037859 382 A 382 (504)
Q Consensus 382 ~ 382 (504)
.
T Consensus 392 ~ 392 (506)
T PRK09862 392 I 392 (506)
T ss_pred H
Confidence 3
No 203
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.68 E-value=1.5e-07 Score=104.93 Aligned_cols=83 Identities=18% Similarity=0.200 Sum_probs=62.0
Q ss_pred cccccccChhHHHHHHHhh------cccccccCCCCCcHHHHHHHHHHhc---CCcEEEEeccccCChHHHHHHHHh---
Q 037859 207 TFDTLAMETKKKEEIKKDL------KKGYLLYGPPGTGKSTMIAAMANFL---NYDVYDLELTTVQDNSELRSLLID--- 274 (504)
Q Consensus 207 ~f~~~~~~~~~k~~i~~~l------~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~~~~~~l~~l~~~--- 274 (504)
+|+.+++.....+++++.+ ...+||+|++||||+++|++|.+.. +.+++.+||..+....-...+|..
T Consensus 323 ~~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~~~~~elfg~~~~ 402 (638)
T PRK11388 323 TFDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEALAEEFLGSDRT 402 (638)
T ss_pred cccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChHHHHHHhcCCCCc
Confidence 5777777776666666666 4569999999999999999998765 468999999988642222334431
Q ss_pred -----------ccCCeEEEEeccccc
Q 037859 275 -----------TSSKSILVIEDIDCS 289 (504)
Q Consensus 275 -----------~~~~~Il~iDeiD~~ 289 (504)
......|||||||.+
T Consensus 403 ~~~~~~~g~~~~a~~GtL~ldei~~l 428 (638)
T PRK11388 403 DSENGRLSKFELAHGGTLFLEKVEYL 428 (638)
T ss_pred CccCCCCCceeECCCCEEEEcChhhC
Confidence 235678999999986
No 204
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.68 E-value=1.9e-07 Score=96.87 Aligned_cols=181 Identities=18% Similarity=0.243 Sum_probs=99.1
Q ss_pred cCCCccccccccChhHHH--HHHHhh-------cccccccCCCCCcHHHHHHHHHHhcC-----CcEEEEeccccCCh--
Q 037859 202 FEHPATFDTLAMETKKKE--EIKKDL-------KKGYLLYGPPGTGKSTMIAAMANFLN-----YDVYDLELTTVQDN-- 265 (504)
Q Consensus 202 ~~~p~~f~~~~~~~~~k~--~i~~~l-------~rg~LL~GPpGtGKTsla~aiA~~l~-----~~i~~l~~~~~~~~-- 265 (504)
+...-+|++++..+.-.. .+...+ -..++||||+|.|||.|++|++++.. ..++++........
T Consensus 80 l~~~ytFdnFv~g~~N~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v 159 (408)
T COG0593 80 LNPKYTFDNFVVGPSNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFV 159 (408)
T ss_pred CCCCCchhheeeCCchHHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHH
Confidence 334456888776654322 111222 23478999999999999999998873 23444433222100
Q ss_pred HHHH----HHHHhccCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccc
Q 037859 266 SELR----SLLIDTSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWS 341 (504)
Q Consensus 266 ~~l~----~l~~~~~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~ 341 (504)
..++ .-|.+.-+--+++||||+.+. |+. ..+..+-.+.|.+ ..
T Consensus 160 ~a~~~~~~~~Fk~~y~~dlllIDDiq~l~---gk~---------------------------~~qeefFh~FN~l---~~ 206 (408)
T COG0593 160 KALRDNEMEKFKEKYSLDLLLIDDIQFLA---GKE---------------------------RTQEEFFHTFNAL---LE 206 (408)
T ss_pred HHHHhhhHHHHHHhhccCeeeechHhHhc---CCh---------------------------hHHHHHHHHHHHH---Hh
Confidence 0000 111111234589999999862 211 1122333333333 21
Q ss_pred cCCCceEEEEecC-CCC---CCChhhhcCCCce--eEEEecCCCHHHHHHHHHHhcCcCCcchHHH-HhcCccCCCCCHH
Q 037859 342 ASGEERIIVFTTN-YVD---KLDPALIRRGRMD--KHIEMSYCCFEAFKVLAKNYLDIDSHELYAV-IESMPAETNMTPA 414 (504)
Q Consensus 342 ~~~~~~ivI~tTN-~~e---~Ld~ALlRpGR~d--~~I~~~~p~~e~~~~i~~~~l~~~~~~~~~~-i~~l~~~~~~s~a 414 (504)
.++ .||+|+. .|. .+.|.|.+ ||. ..+.+..|+.+.+..|++...........++ +.-++....-+.+
T Consensus 207 --~~k-qIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~~nvR 281 (408)
T COG0593 207 --NGK-QIVLTSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLDRNVR 281 (408)
T ss_pred --cCC-EEEEEcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccHH
Confidence 122 4555554 443 35699999 875 6778899999999999998654443333333 2333333344445
Q ss_pred HHHHhh
Q 037859 415 DVAENL 420 (504)
Q Consensus 415 ~i~~~l 420 (504)
++.+.+
T Consensus 282 eLegaL 287 (408)
T COG0593 282 ELEGAL 287 (408)
T ss_pred HHHHHH
Confidence 554443
No 205
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.66 E-value=1.7e-07 Score=100.97 Aligned_cols=61 Identities=38% Similarity=0.577 Sum_probs=49.6
Q ss_pred ccceeeecCCCccccccccChhHHHHHHHhh---------cccccccCCCCCcHHHHHHHHHHhcCCcEEEE
Q 037859 195 TKWSHVFFEHPATFDTLAMETKKKEEIKKDL---------KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDL 257 (504)
Q Consensus 195 ~~w~~~~~~~p~~f~~~~~~~~~k~~i~~~l---------~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l 257 (504)
..|. .-..|.+.++|+..+...++|...+ ++-+||+||||||||++++++|++++..+..-
T Consensus 7 ~~W~--~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew 76 (519)
T PF03215_consen 7 EPWV--EKYAPKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEW 76 (519)
T ss_pred Cccc--hhcCCCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEe
Confidence 3464 3456899999999998888887777 23467899999999999999999999877653
No 206
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.65 E-value=9.3e-08 Score=94.31 Aligned_cols=63 Identities=29% Similarity=0.502 Sum_probs=45.8
Q ss_pred cccccccCCCCCcHHHHHHHHHHhc---CCcEEEEeccccCC-------hHHHH-HHHHhccCCeEEEEecccc
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFL---NYDVYDLELTTVQD-------NSELR-SLLIDTSSKSILVIEDIDC 288 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~~~-------~~~l~-~l~~~~~~~~Il~iDeiD~ 288 (504)
+.+++||||||||||.||.|||+++ |..++.+....+-. ..... ++......--+|+|||+=.
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l~~~dlLIiDDlG~ 178 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRELKKVDLLIIDDIGY 178 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHhhcCCEEEEecccC
Confidence 6789999999999999999999988 67777777766421 01111 2222245678999999955
No 207
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=8.2e-08 Score=98.01 Aligned_cols=132 Identities=22% Similarity=0.326 Sum_probs=89.1
Q ss_pred cccccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccCC--------hHHHHHHHHhc------cCCeEEEEeccccccc
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQD--------NSELRSLLIDT------SSKSILVIEDIDCSLD 291 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~--------~~~l~~l~~~~------~~~~Il~iDeiD~~~~ 291 (504)
+..+||.||.|+|||.||+.+|.-++.||...||+.+.. ++-+.+++..+ .++.|+||||+|.+..
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~ 305 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITK 305 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcc
Confidence 678999999999999999999999999999999998731 13466777665 3789999999999741
Q ss_pred ccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccc---------cCCCceEEEEecC-------C
Q 037859 292 LTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWS---------ASGEERIIVFTTN-------Y 355 (504)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~---------~~~~~~ivI~tTN-------~ 355 (504)
....-. ..-+....-+..+||..++|-.- ..+++.+.|=||| -
T Consensus 306 ~~~~i~---------------------~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGA 364 (564)
T KOG0745|consen 306 KAESIH---------------------TSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGA 364 (564)
T ss_pred cCcccc---------------------ccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEeccc
Confidence 110000 00112233466778888876421 1223445555555 3
Q ss_pred CCCCChhhhcCCCce-eEEEecCCCH
Q 037859 356 VDKLDPALIRRGRMD-KHIEMSYCCF 380 (504)
Q Consensus 356 ~e~Ld~ALlRpGR~d-~~I~~~~p~~ 380 (504)
--.||.-+.| |+| ..+-|+.|+.
T Consensus 365 F~~Ldk~I~r--R~~d~slGFg~~s~ 388 (564)
T KOG0745|consen 365 FVGLDKIISR--RLDDKSLGFGAPSS 388 (564)
T ss_pred ccchHHHHHH--hhcchhcccCCCCC
Confidence 3567888888 774 5667777743
No 208
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.63 E-value=7.1e-08 Score=98.42 Aligned_cols=63 Identities=24% Similarity=0.364 Sum_probs=45.5
Q ss_pred cccccccCCCCCcHHHHHHHHHHhc---CCcEEEEeccccCC---------hHHHHHHHHhccCCeEEEEecccc
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFL---NYDVYDLELTTVQD---------NSELRSLLIDTSSKSILVIEDIDC 288 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~~~---------~~~l~~l~~~~~~~~Il~iDeiD~ 288 (504)
..+++||||||||||+|+.|||+++ +..+++++...+.. .......+......-+|+|||+..
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~~~DLLIIDDlG~ 257 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLINCDLLIIDDLGT 257 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhccCCEEEEeccCC
Confidence 5789999999999999999999987 67777776655311 111122234445667999999976
No 209
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=5.5e-08 Score=101.15 Aligned_cols=46 Identities=26% Similarity=0.530 Sum_probs=40.3
Q ss_pred CccccccccChhHHHHHHHhh--cccccccCCCCCcHHHHHHHHHHhc
Q 037859 205 PATFDTLAMETKKKEEIKKDL--KKGYLLYGPPGTGKSTMIAAMANFL 250 (504)
Q Consensus 205 p~~f~~~~~~~~~k~~i~~~l--~rg~LL~GPpGtGKTsla~aiA~~l 250 (504)
...|.+|.+++..|+.+.-.. .+++||+||||||||++|+-+..-|
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAAGgHnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAAGGHNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHhcCCcEEEecCCCCchHHhhhhhcccC
Confidence 457999999999998887766 7889999999999999999987655
No 210
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.60 E-value=8.3e-07 Score=88.56 Aligned_cols=111 Identities=16% Similarity=0.239 Sum_probs=81.5
Q ss_pred cccccccCCCCCcHHHHHHHHHHhcCC----------------cEEEEeccc---cCChHHHHHHHHhc------cCCeE
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFLNY----------------DVYDLELTT---VQDNSELRSLLIDT------SSKSI 280 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l~~----------------~i~~l~~~~---~~~~~~l~~l~~~~------~~~~I 280 (504)
+.+|||+||+|+||+.+|.++|..+-+ +++.+.... .-.-+.++.+.... ...-|
T Consensus 19 ~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~kv 98 (290)
T PRK05917 19 PSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESPYKI 98 (290)
T ss_pred CeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCCceE
Confidence 678999999999999999999988743 244442211 11334555554443 24569
Q ss_pred EEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccCCCceEEEEecCCCCCCC
Q 037859 281 LVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERIIVFTTNYVDKLD 360 (504)
Q Consensus 281 l~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~~~~ivI~tTN~~e~Ld 360 (504)
++||++|.+ +....+.||..|+.- ++..++|+.|+.++.|.
T Consensus 99 ~ii~~ad~m-----------------------------------t~~AaNaLLK~LEEP----p~~~~fiL~~~~~~~ll 139 (290)
T PRK05917 99 YIIHEADRM-----------------------------------TLDAISAFLKVLEDP----PQHGVIILTSAKPQRLP 139 (290)
T ss_pred EEEechhhc-----------------------------------CHHHHHHHHHHhhcC----CCCeEEEEEeCChhhCc
Confidence 999999986 234678899998853 46689999999999999
Q ss_pred hhhhcCCCceeEEEecCC
Q 037859 361 PALIRRGRMDKHIEMSYC 378 (504)
Q Consensus 361 ~ALlRpGR~d~~I~~~~p 378 (504)
|.++. |+ ..+.|+.+
T Consensus 140 ~TI~S--Rc-q~~~~~~~ 154 (290)
T PRK05917 140 PTIRS--RS-LSIHIPME 154 (290)
T ss_pred HHHHh--cc-eEEEccch
Confidence 99999 88 57888754
No 211
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.60 E-value=4e-07 Score=90.30 Aligned_cols=23 Identities=35% Similarity=0.592 Sum_probs=21.7
Q ss_pred ccccCCCCCcHHHHHHHHHHhcC
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLN 251 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~ 251 (504)
++|+||||+|||++++.+++.+.
T Consensus 46 ~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 46 ILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred EEEEcCCCCCHHHHHHHHHHhcC
Confidence 78999999999999999999886
No 212
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.57 E-value=4.1e-07 Score=98.49 Aligned_cols=150 Identities=17% Similarity=0.234 Sum_probs=96.9
Q ss_pred CccccccccChhHHHHHHHhh------cccccccCCCCCcHHHHHHHHHHhc---CCcEEEEeccccCChHHHHH-HHH-
Q 037859 205 PATFDTLAMETKKKEEIKKDL------KKGYLLYGPPGTGKSTMIAAMANFL---NYDVYDLELTTVQDNSELRS-LLI- 273 (504)
Q Consensus 205 p~~f~~~~~~~~~k~~i~~~l------~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~~~~~~l~~-l~~- 273 (504)
..+|+.+++.....+.+.+.+ ...+|++|++||||+++|++|-+.. +.|++.+||..+.. ..+.. +|.
T Consensus 208 ~~~f~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e-~lleseLFG~ 286 (526)
T TIGR02329 208 RYRLDDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAE-SLLEAELFGY 286 (526)
T ss_pred ccchhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCCh-hHHHHHhcCC
Confidence 356888888887777777776 5679999999999999999997654 57899999998853 22322 222
Q ss_pred -----------------hccCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhh
Q 037859 274 -----------------DTSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFI 336 (504)
Q Consensus 274 -----------------~~~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~l 336 (504)
+......|||||||.+ +......||..|
T Consensus 287 ~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~L-----------------------------------p~~~Q~~Ll~~L 331 (526)
T TIGR02329 287 EEGAFTGARRGGRTGLIEAAHRGTLFLDEIGEM-----------------------------------PLPLQTRLLRVL 331 (526)
T ss_pred cccccccccccccccchhhcCCceEEecChHhC-----------------------------------CHHHHHHHHHHH
Confidence 1234678999999986 223455666666
Q ss_pred cCccc-c------CCCceEEEEecCCC-------CCCChhhhcCCCce-eEEEecCCC--HHHHHHHHHHhcC
Q 037859 337 DGLWS-A------SGEERIIVFTTNYV-------DKLDPALIRRGRMD-KHIEMSYCC--FEAFKVLAKNYLD 392 (504)
Q Consensus 337 Dg~~~-~------~~~~~ivI~tTN~~-------e~Ld~ALlRpGR~d-~~I~~~~p~--~e~~~~i~~~~l~ 392 (504)
+.-.- . ...++-+|+|||.. ..+.+.|.. |+. ..|++|+.. .++...|+..|+.
T Consensus 332 ~~~~~~r~g~~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~--rL~~~~I~lPPLReR~eDI~~L~~~fl~ 402 (526)
T TIGR02329 332 EEREVVRVGGTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFY--RLSILRIALPPLRERPGDILPLAAEYLV 402 (526)
T ss_pred hcCcEEecCCCceeeecceEEeccCCCHHHHhhhcchhHHHHH--hcCCcEEeCCCchhchhHHHHHHHHHHH
Confidence 42110 0 01123577777643 123445554 553 456666643 3566777788774
No 213
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.56 E-value=8.5e-07 Score=96.43 Aligned_cols=85 Identities=15% Similarity=0.249 Sum_probs=61.9
Q ss_pred CCccccccccChhHHHHHHHhh------cccccccCCCCCcHHHHHHHHHHhc---CCcEEEEeccccCChHHHH-HHHH
Q 037859 204 HPATFDTLAMETKKKEEIKKDL------KKGYLLYGPPGTGKSTMIAAMANFL---NYDVYDLELTTVQDNSELR-SLLI 273 (504)
Q Consensus 204 ~p~~f~~~~~~~~~k~~i~~~l------~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~~~~~~l~-~l~~ 273 (504)
...+|+.+++.....+++++.+ ...+||+|++||||+++|+++-... +.+++.++|..+.. ..+. .+|.
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~-~~~e~elFG 277 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPD-DVVESELFG 277 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCH-HHHHHHhcC
Confidence 3446888888877667677666 5669999999999999999985543 46899999998753 2222 2332
Q ss_pred -----------------hccCCeEEEEeccccc
Q 037859 274 -----------------DTSSKSILVIEDIDCS 289 (504)
Q Consensus 274 -----------------~~~~~~Il~iDeiD~~ 289 (504)
+......|||||||.+
T Consensus 278 ~~~~~~~~~~~~~~g~~e~a~~GtL~LdeI~~L 310 (520)
T PRK10820 278 HAPGAYPNALEGKKGFFEQANGGSVLLDEIGEM 310 (520)
T ss_pred CCCCCcCCcccCCCChhhhcCCCEEEEeChhhC
Confidence 1234678999999986
No 214
>PRK06921 hypothetical protein; Provisional
Probab=98.55 E-value=1.3e-07 Score=94.03 Aligned_cols=63 Identities=27% Similarity=0.356 Sum_probs=44.0
Q ss_pred cccccccCCCCCcHHHHHHHHHHhc----CCcEEEEeccccCCh-----HHHHHHHHhccCCeEEEEecccc
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFL----NYDVYDLELTTVQDN-----SELRSLLIDTSSKSILVIEDIDC 288 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l----~~~i~~l~~~~~~~~-----~~l~~l~~~~~~~~Il~iDeiD~ 288 (504)
..+++|+||||||||+|+.|||+++ +..++++....+-.. ..+...+.......+|+|||++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~~~~~~~~~~~~~~dlLiIDDl~~ 188 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDFDLLEAKLNRMKKVEVLFIDDLFK 188 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecccc
Confidence 3579999999999999999999986 566677765432110 11222333445678999999954
No 215
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.55 E-value=1.5e-07 Score=84.06 Aligned_cols=58 Identities=24% Similarity=0.382 Sum_probs=43.1
Q ss_pred cccccccCCCCCcHHHHHHHHHHhcCC---cEEEEeccccCChHHHHHHHHhccCCeEEEEeccccc
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFLNY---DVYDLELTTVQDNSELRSLLIDTSSKSILVIEDIDCS 289 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l~~---~i~~l~~~~~~~~~~l~~l~~~~~~~~Il~iDeiD~~ 289 (504)
...+||+|+|||||+++|++|....+. +++.+++.... .+++.. ..+..|+|+|||.+
T Consensus 21 ~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----~~~l~~-a~~gtL~l~~i~~L 81 (138)
T PF14532_consen 21 SSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----AELLEQ-AKGGTLYLKNIDRL 81 (138)
T ss_dssp SS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----HHHHHH-CTTSEEEEECGCCS
T ss_pred CCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----HHHHHH-cCCCEEEECChHHC
Confidence 567999999999999999999887754 44555555543 334444 38889999999996
No 216
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.54 E-value=2.2e-06 Score=83.32 Aligned_cols=64 Identities=27% Similarity=0.326 Sum_probs=54.9
Q ss_pred cccccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccCChHHHHHHHHhcc-CCeEEEEeccccc
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQDNSELRSLLIDTS-SKSILVIEDIDCS 289 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~~l~~l~~~~~-~~~Il~iDeiD~~ 289 (504)
..|-.++||+|||||.+++++|+.+|..++.++|+...+...+.++|..+. ..+-+++||+|.+
T Consensus 32 ~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~~~l~ril~G~~~~GaW~cfdefnrl 96 (231)
T PF12774_consen 32 NLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDYQSLSRILKGLAQSGAWLCFDEFNRL 96 (231)
T ss_dssp TTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-HHHHHHHHHHHHHHT-EEEEETCCCS
T ss_pred CCCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccHHHHHHHHHHHhhcCchhhhhhhhhh
Confidence 467789999999999999999999999999999999888899999997765 6899999999986
No 217
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.53 E-value=3.8e-06 Score=82.28 Aligned_cols=111 Identities=17% Similarity=0.165 Sum_probs=79.2
Q ss_pred cccccccCCCCCcHHHHHHHHHHhcCC----------------------cEEEEeccc-cCChHHHHHHHHh---cc---
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFLNY----------------------DVYDLELTT-VQDNSELRSLLID---TS--- 276 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l~~----------------------~i~~l~~~~-~~~~~~l~~l~~~---~~--- 276 (504)
+.++||+||+|+||..+|.++|..+-+ +++.+.-.. .-..++++.+... .+
T Consensus 7 ~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~e~ 86 (261)
T PRK05818 7 THPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSVES 86 (261)
T ss_pred CcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCchhc
Confidence 678999999999999999999987622 233321111 1123444444332 22
Q ss_pred -CCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccCCCceEEEEecCC
Q 037859 277 -SKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERIIVFTTNY 355 (504)
Q Consensus 277 -~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~~~~ivI~tTN~ 355 (504)
..-|++|+++|.+ +....+.||..++.- +...++|++|+.
T Consensus 87 ~~~KV~II~~ae~m-----------------------------------~~~AaNaLLK~LEEP----p~~t~fiLit~~ 127 (261)
T PRK05818 87 NGKKIYIIYGIEKL-----------------------------------NKQSANSLLKLIEEP----PKNTYGIFTTRN 127 (261)
T ss_pred CCCEEEEeccHhhh-----------------------------------CHHHHHHHHHhhcCC----CCCeEEEEEECC
Confidence 3579999999986 344678899998853 466899999999
Q ss_pred CCCCChhhhcCCCceeEEEecCC
Q 037859 356 VDKLDPALIRRGRMDKHIEMSYC 378 (504)
Q Consensus 356 ~e~Ld~ALlRpGR~d~~I~~~~p 378 (504)
++.|.|.+++ |+ ..+.++.+
T Consensus 128 ~~~lLpTI~S--RC-q~~~~~~~ 147 (261)
T PRK05818 128 ENNILNTILS--RC-VQYVVLSK 147 (261)
T ss_pred hHhCchHhhh--he-eeeecCCh
Confidence 9999999999 88 45777665
No 218
>PF13173 AAA_14: AAA domain
Probab=98.51 E-value=2.3e-07 Score=81.75 Aligned_cols=63 Identities=24% Similarity=0.440 Sum_probs=47.5
Q ss_pred ccccccCCCCCcHHHHHHHHHHhcC--CcEEEEeccccCChH----HHHHHHHhc--cCCeEEEEeccccc
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANFLN--YDVYDLELTTVQDNS----ELRSLLIDT--SSKSILVIEDIDCS 289 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~l~--~~i~~l~~~~~~~~~----~l~~l~~~~--~~~~Il~iDeiD~~ 289 (504)
+-++|+||.|||||++++.++..+. .++.++++....... ++.+.+.+. ..+.+||||||+.+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPDLLEYFLELIKPGKKYIFIDEIQYL 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhhhHHHHHHhhccCCcEEEEehhhhh
Confidence 4578999999999999999998876 788888887653211 133444443 36799999999874
No 219
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.50 E-value=1.2e-07 Score=81.00 Aligned_cols=61 Identities=23% Similarity=0.369 Sum_probs=38.0
Q ss_pred ccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccCChHHHHHHHHhccCCeEEEEeccccc
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQDNSELRSLLIDTSSKSILVIEDIDCS 289 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~~l~~l~~~~~~~~Il~iDeiD~~ 289 (504)
+.||||||+|||++++.||..+...+-.-....+-....-.+.+..-....|+++||+...
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~~~~~~~w~gY~~q~vvi~DD~~~~ 61 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTRNPGDKFWDGYQGQPVVIIDDFGQD 61 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeCCCccchhhccCCCcEEEEeecCcc
Confidence 5789999999999999998877432211100111001112234455567789999999763
No 220
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.50 E-value=5.1e-07 Score=93.47 Aligned_cols=153 Identities=16% Similarity=0.187 Sum_probs=99.2
Q ss_pred CCccccccccChhHHHHHHHhh------cccccccCCCCCcHHHHHHHHHHh----cCCcEEEEeccccCChHHHHHHHH
Q 037859 204 HPATFDTLAMETKKKEEIKKDL------KKGYLLYGPPGTGKSTMIAAMANF----LNYDVYDLELTTVQDNSELRSLLI 273 (504)
Q Consensus 204 ~p~~f~~~~~~~~~k~~i~~~l------~rg~LL~GPpGtGKTsla~aiA~~----l~~~i~~l~~~~~~~~~~l~~l~~ 273 (504)
....++.+++.....+++++.+ ...+|++|++||||+.+|++|... .+-|++.+||..+..+.....+|.
T Consensus 73 ~~~~~~~LIG~~~~~~~~~eqik~~ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~~eLFG 152 (403)
T COG1221 73 KSEALDDLIGESPSLQELREQIKAYAPSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQEAELFG 152 (403)
T ss_pred cchhhhhhhccCHHHHHHHHHHHhhCCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHHHHHHhc
Confidence 3445788888887777777766 455999999999999999999643 366899999999977666655664
Q ss_pred hc-----------------cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhh
Q 037859 274 DT-----------------SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFI 336 (504)
Q Consensus 274 ~~-----------------~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~l 336 (504)
-. ....+||+|||..+- ....-.||..|
T Consensus 153 ~~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP-----------------------------------~~~Q~kLl~~l 197 (403)
T COG1221 153 HEKGAFTGAQGGKAGLFEQANGGTLFLDEIHRLP-----------------------------------PEGQEKLLRVL 197 (403)
T ss_pred cccceeecccCCcCchheecCCCEEehhhhhhCC-----------------------------------HhHHHHHHHHH
Confidence 22 245799999998851 22344566666
Q ss_pred cCcc-------ccCCCceEEEEecCC--CCCCCh--hhhcCCCceeEEEecCC--CHHHHHHHHHHhcC
Q 037859 337 DGLW-------SASGEERIIVFTTNY--VDKLDP--ALIRRGRMDKHIEMSYC--CFEAFKVLAKNYLD 392 (504)
Q Consensus 337 Dg~~-------~~~~~~~ivI~tTN~--~e~Ld~--ALlRpGR~d~~I~~~~p--~~e~~~~i~~~~l~ 392 (504)
|.-. ......+-+|++||- .+.+-. .|.|. |+...|++|.. ..+++..++..|+.
T Consensus 198 e~g~~~rvG~~~~~~~dVRli~AT~~~l~~~~~~g~dl~~r-l~~~~I~LPpLrER~~Di~~L~e~Fl~ 265 (403)
T COG1221 198 EEGEYRRVGGSQPRPVDVRLICATTEDLEEAVLAGADLTRR-LNILTITLPPLRERKEDILLLAEHFLK 265 (403)
T ss_pred HcCceEecCCCCCcCCCceeeeccccCHHHHHHhhcchhhh-hcCceecCCChhhchhhHHHHHHHHHH
Confidence 6311 112345677887762 122222 34431 55566666654 34555566777764
No 221
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.49 E-value=9.6e-07 Score=99.35 Aligned_cols=83 Identities=20% Similarity=0.348 Sum_probs=62.2
Q ss_pred ccccccccChhHHHHHHHhh------cccccccCCCCCcHHHHHHHHHHhc---CCcEEEEeccccCChHHHHH-HH---
Q 037859 206 ATFDTLAMETKKKEEIKKDL------KKGYLLYGPPGTGKSTMIAAMANFL---NYDVYDLELTTVQDNSELRS-LL--- 272 (504)
Q Consensus 206 ~~f~~~~~~~~~k~~i~~~l------~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~~~~~~l~~-l~--- 272 (504)
..|+.+++.....+.+++.+ ...+|++|+||||||++|++|.... +.+++.++|..+... .+.. +|
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~-~~~~~lfg~~ 451 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG-LLESDLFGHE 451 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChh-HhhhhhcCcc
Confidence 45788888888888877766 5569999999999999999998754 578999999887421 1111 11
Q ss_pred --------------HhccCCeEEEEeccccc
Q 037859 273 --------------IDTSSKSILVIEDIDCS 289 (504)
Q Consensus 273 --------------~~~~~~~Il~iDeiD~~ 289 (504)
.+...+..|||||||.+
T Consensus 452 ~~~~~g~~~~~~g~le~a~~GtL~Ldei~~L 482 (686)
T PRK15429 452 RGAFTGASAQRIGRFELADKSSLFLDEVGDM 482 (686)
T ss_pred cccccccccchhhHHHhcCCCeEEEechhhC
Confidence 12345689999999986
No 222
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.49 E-value=9.3e-07 Score=95.75 Aligned_cols=83 Identities=17% Similarity=0.264 Sum_probs=62.8
Q ss_pred ccccccccChhHHHHHHHhh------cccccccCCCCCcHHHHHHHHHHh-----------cCCcEEEEeccccCChHHH
Q 037859 206 ATFDTLAMETKKKEEIKKDL------KKGYLLYGPPGTGKSTMIAAMANF-----------LNYDVYDLELTTVQDNSEL 268 (504)
Q Consensus 206 ~~f~~~~~~~~~k~~i~~~l------~rg~LL~GPpGtGKTsla~aiA~~-----------l~~~i~~l~~~~~~~~~~l 268 (504)
..|+.+++.....+.+.+.+ ...+||+|++||||+.+|++|-+. -+.|++.+||..+.. ..+
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e-~ll 294 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAE-SLL 294 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCCh-hhH
Confidence 35888888887777777766 556999999999999999999776 467899999998853 223
Q ss_pred HH-HHH------------------hccCCeEEEEeccccc
Q 037859 269 RS-LLI------------------DTSSKSILVIEDIDCS 289 (504)
Q Consensus 269 ~~-l~~------------------~~~~~~Il~iDeiD~~ 289 (504)
.. +|. +......||||||+.+
T Consensus 295 eseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~L 334 (538)
T PRK15424 295 EAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEM 334 (538)
T ss_pred HHHhcCCccccccCccccccCCchhccCCCEEEEcChHhC
Confidence 22 222 1234578999999986
No 223
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.47 E-value=5.6e-07 Score=101.07 Aligned_cols=127 Identities=17% Similarity=0.232 Sum_probs=77.8
Q ss_pred cccccCCCCCcHHHHHHHHHHhcCCc-------EEEEeccccCC-h----H--HHHHHHHhccCCeEEEEeccccccccc
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFLNYD-------VYDLELTTVQD-N----S--ELRSLLIDTSSKSILVIEDIDCSLDLT 293 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l~~~-------i~~l~~~~~~~-~----~--~l~~l~~~~~~~~Il~iDeiD~~~~~~ 293 (504)
.+||.|+||||||.+++++++..... ...+.+..... . . .+..-....+...+++|||+|.+
T Consensus 494 hVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~~~d~~tG~~~le~GaLvlAdgGtL~IDEidkm---- 569 (915)
T PTZ00111 494 NVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIKFNESDNGRAMIQPGAVVLANGGVCCIDELDKC---- 569 (915)
T ss_pred eEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhhhcccccCcccccCCcEEEcCCCeEEecchhhC----
Confidence 48999999999999999999865433 23333332210 0 0 00000011235689999999985
Q ss_pred ccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcC---------ccccCCCceEEEEecCCCC-------
Q 037859 294 GQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDG---------LWSASGEERIIVFTTNYVD------- 357 (504)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg---------~~~~~~~~~ivI~tTN~~e------- 357 (504)
+....+.|+..|+. +...-....-||+|+|+.+
T Consensus 570 -------------------------------s~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~ 618 (915)
T PTZ00111 570 -------------------------------HNESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNK 618 (915)
T ss_pred -------------------------------CHHHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCccc
Confidence 12244556665532 2111123467899999752
Q ss_pred ------CCChhhhcCCCceeEE-EecCCCHHHHHHHHHHhc
Q 037859 358 ------KLDPALIRRGRMDKHI-EMSYCCFEAFKVLAKNYL 391 (504)
Q Consensus 358 ------~Ld~ALlRpGR~d~~I-~~~~p~~e~~~~i~~~~l 391 (504)
.|+++|+. |||... -++.|+.+.=+.|+.+.+
T Consensus 619 s~~eni~Lp~~LLS--RFDLIf~l~D~~d~~~D~~lA~hI~ 657 (915)
T PTZ00111 619 AVIENINISPSLFT--RFDLIYLVLDHIDQDTDQLISLSIA 657 (915)
T ss_pred CcccccCCChHHhh--hhcEEEEecCCCChHHHHHHHHHHH
Confidence 37899999 999775 457888776666665544
No 224
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.47 E-value=1.7e-06 Score=94.05 Aligned_cols=82 Identities=15% Similarity=0.235 Sum_probs=61.7
Q ss_pred cccccccChhHHHHHHHhh------cccccccCCCCCcHHHHHHHHHHhc---CCcEEEEeccccCChHHHH-HHHH---
Q 037859 207 TFDTLAMETKKKEEIKKDL------KKGYLLYGPPGTGKSTMIAAMANFL---NYDVYDLELTTVQDNSELR-SLLI--- 273 (504)
Q Consensus 207 ~f~~~~~~~~~k~~i~~~l------~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~~~~~~l~-~l~~--- 273 (504)
.+..+++.....+.+.+.+ ...+||+|++||||+.+|++|.... +.+++.++|..+... .+. .+|.
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~-~~e~~lfG~~~ 263 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPES-LAESELFGHVK 263 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChH-HHHHHhcCccc
Confidence 3566777777777777777 6679999999999999999998764 568999999988532 222 2222
Q ss_pred --------------hccCCeEEEEeccccc
Q 037859 274 --------------DTSSKSILVIEDIDCS 289 (504)
Q Consensus 274 --------------~~~~~~Il~iDeiD~~ 289 (504)
+......|||||||.+
T Consensus 264 g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L 293 (509)
T PRK05022 264 GAFTGAISNRSGKFELADGGTLFLDEIGEL 293 (509)
T ss_pred cccCCCcccCCcchhhcCCCEEEecChhhC
Confidence 1234578999999986
No 225
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.44 E-value=2.5e-06 Score=85.34 Aligned_cols=129 Identities=21% Similarity=0.219 Sum_probs=88.8
Q ss_pred hhHHHHHHHhh-----cccccccCCCCCcHHHHHHHHHHhcCC------------------------cEEEEecccc-CC
Q 037859 215 TKKKEEIKKDL-----KKGYLLYGPPGTGKSTMIAAMANFLNY------------------------DVYDLELTTV-QD 264 (504)
Q Consensus 215 ~~~k~~i~~~l-----~rg~LL~GPpGtGKTsla~aiA~~l~~------------------------~i~~l~~~~~-~~ 264 (504)
+..++.+...+ +.+|||+|| +||+++|.++|..+.+ +++.+..... -.
T Consensus 8 ~~~~~~L~~~~~~~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~ 85 (290)
T PRK07276 8 PKVFQRFQTILEQDRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIK 85 (290)
T ss_pred HHHHHHHHHHHHcCCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCC
Confidence 44444555444 667999996 6899999999986632 2333322211 13
Q ss_pred hHHHHHHHHhc------cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcC
Q 037859 265 NSELRSLLIDT------SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDG 338 (504)
Q Consensus 265 ~~~l~~l~~~~------~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg 338 (504)
-+.+|.+.... +..-|++||++|.+ +....+.||..++.
T Consensus 86 idqIR~l~~~~~~~p~~~~~kV~II~~ad~m-----------------------------------~~~AaNaLLKtLEE 130 (290)
T PRK07276 86 TDTIRELVKNFSQSGYEGKQQVFIIKDADKM-----------------------------------HVNAANSLLKVIEE 130 (290)
T ss_pred HHHHHHHHHHHhhCcccCCcEEEEeehhhhc-----------------------------------CHHHHHHHHHHhcC
Confidence 35666655443 24579999999986 23467889999985
Q ss_pred ccccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHH
Q 037859 339 LWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAK 388 (504)
Q Consensus 339 ~~~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~ 388 (504)
- +...++|++|+.++.|-|.+++ |+ .+|.|+. +.+....++.
T Consensus 131 P----p~~t~~iL~t~~~~~lLpTI~S--Rc-q~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 131 P----QSEIYIFLLTNDENKVLPTIKS--RT-QIFHFPK-NEAYLIQLLE 172 (290)
T ss_pred C----CCCeEEEEEECChhhCchHHHH--cc-eeeeCCC-cHHHHHHHHH
Confidence 3 4558899999999999999999 88 6899966 5555555554
No 226
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.43 E-value=5.4e-07 Score=78.99 Aligned_cols=63 Identities=30% Similarity=0.498 Sum_probs=42.9
Q ss_pred ccccccCCCCCcHHHHHHHHHHhc--------CCcEEEEeccccCChHHHHHH---------------------HHhc--
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANFL--------NYDVYDLELTTVQDNSELRSL---------------------LIDT-- 275 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~l--------~~~i~~l~~~~~~~~~~l~~l---------------------~~~~-- 275 (504)
+.++++||||+|||++++.++..+ +.+++.+++....+...+... +...
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~ 84 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALD 84 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHH
Confidence 457899999999999999999987 678888877665433332222 1111
Q ss_pred -cCCeEEEEeccccc
Q 037859 276 -SSKSILVIEDIDCS 289 (504)
Q Consensus 276 -~~~~Il~iDeiD~~ 289 (504)
....+|+|||+|.+
T Consensus 85 ~~~~~~lviDe~~~l 99 (131)
T PF13401_consen 85 RRRVVLLVIDEADHL 99 (131)
T ss_dssp HCTEEEEEEETTHHH
T ss_pred hcCCeEEEEeChHhc
Confidence 12359999999985
No 227
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.43 E-value=3.1e-07 Score=90.87 Aligned_cols=149 Identities=16% Similarity=0.184 Sum_probs=93.4
Q ss_pred ecCCCccccccccChhHHHHHHHhh----cccccccCCCCCcHHHHHHHHHHhcCCc------EEEEeccccC---ChHH
Q 037859 201 FFEHPATFDTLAMETKKKEEIKKDL----KKGYLLYGPPGTGKSTMIAAMANFLNYD------VYDLELTTVQ---DNSE 267 (504)
Q Consensus 201 ~~~~p~~f~~~~~~~~~k~~i~~~l----~rg~LL~GPpGtGKTsla~aiA~~l~~~------i~~l~~~~~~---~~~~ 267 (504)
+-..|..+..++...+....+.... -...|+|||||||||+.+.|.|..+-.+ +..++.++-. -...
T Consensus 33 ekyrP~~l~dv~~~~ei~st~~~~~~~~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~rgid~vr~ 112 (360)
T KOG0990|consen 33 EKYRPPFLGIVIKQEPIWSTENRYSGMPGLPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDDRGIDPVRQ 112 (360)
T ss_pred cCCCCchhhhHhcCCchhhHHHHhccCCCCCcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCccCCcchHH
Confidence 4556777777777776655555544 2268999999999999999999988552 1223333221 1112
Q ss_pred HHHHHHhcc---------CCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcC
Q 037859 268 LRSLLIDTS---------SKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDG 338 (504)
Q Consensus 268 l~~l~~~~~---------~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg 338 (504)
-.+.|..+. ..-.+++||+|++- +...++|-..+..
T Consensus 113 qi~~fast~~~~~fst~~~fKlvILDEADaMT-----------------------------------~~AQnALRRviek 157 (360)
T KOG0990|consen 113 QIHLFASTQQPTTYSTHAAFKLVILDEADAMT-----------------------------------RDAQNALRRVIEK 157 (360)
T ss_pred HHHHHHhhccceeccccCceeEEEecchhHhh-----------------------------------HHHHHHHHHHHHH
Confidence 233444443 45689999999851 2233444445544
Q ss_pred ccccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhc
Q 037859 339 LWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYL 391 (504)
Q Consensus 339 ~~~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l 391 (504)
+ ..+.-|..-+|++..+.||+.. |+. ...|...+..+......+..
T Consensus 158 ~----t~n~rF~ii~n~~~ki~pa~qs--Rct-rfrf~pl~~~~~~~r~shi~ 203 (360)
T KOG0990|consen 158 Y----TANTRFATISNPPQKIHPAQQS--RCT-RFRFAPLTMAQQTERQSHIR 203 (360)
T ss_pred h----ccceEEEEeccChhhcCchhhc--ccc-cCCCCCCChhhhhhHHHHHH
Confidence 3 2334555778999999999998 773 56666655555554444444
No 228
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.43 E-value=3e-06 Score=85.42 Aligned_cols=123 Identities=20% Similarity=0.248 Sum_probs=90.1
Q ss_pred hcccccccCCCCCcHHHHHHHHHHhcCC-------------cEEEEeccc-cCChHHHHHHHHhc-------cCCeEEEE
Q 037859 225 LKKGYLLYGPPGTGKSTMIAAMANFLNY-------------DVYDLELTT-VQDNSELRSLLIDT-------SSKSILVI 283 (504)
Q Consensus 225 l~rg~LL~GPpGtGKTsla~aiA~~l~~-------------~i~~l~~~~-~~~~~~l~~l~~~~-------~~~~Il~i 283 (504)
+...|||||+.|+||+.+++++|+.+.+ ++..++... .-..++++.+.... +.+-|++|
T Consensus 17 l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir~l~~~~~~~~~~~~~~KvvII 96 (299)
T PRK07132 17 ISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFLSAINKLYFSSFVQSQKKILII 96 (299)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHHHHHHHhccCCcccCCceEEEE
Confidence 3677999999999999999999998722 233343111 12335666665544 25679999
Q ss_pred ecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccCCCceEEEEecCCCCCCChhh
Q 037859 284 EDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPAL 363 (504)
Q Consensus 284 DeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~~~~ivI~tTN~~e~Ld~AL 363 (504)
|++|.+ +....+.||..|+.. ++..++|++|+.++.|-|++
T Consensus 97 ~~~e~m-----------------------------------~~~a~NaLLK~LEEP----p~~t~~il~~~~~~kll~TI 137 (299)
T PRK07132 97 KNIEKT-----------------------------------SNSLLNALLKTIEEP----PKDTYFLLTTKNINKVLPTI 137 (299)
T ss_pred eccccc-----------------------------------CHHHHHHHHHHhhCC----CCCeEEEEEeCChHhChHHH
Confidence 999875 233567899998864 45578888888889999999
Q ss_pred hcCCCceeEEEecCCCHHHHHHHHHH
Q 037859 364 IRRGRMDKHIEMSYCCFEAFKVLAKN 389 (504)
Q Consensus 364 lRpGR~d~~I~~~~p~~e~~~~i~~~ 389 (504)
.. |+ ..++|..++.++....+..
T Consensus 138 ~S--Rc-~~~~f~~l~~~~l~~~l~~ 160 (299)
T PRK07132 138 VS--RC-QVFNVKEPDQQKILAKLLS 160 (299)
T ss_pred Hh--Ce-EEEECCCCCHHHHHHHHHH
Confidence 98 87 6799999998888765554
No 229
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=2.3e-06 Score=85.25 Aligned_cols=36 Identities=28% Similarity=0.482 Sum_probs=33.0
Q ss_pred cccccccCCCCCcHHHHHHHHHHhcCCcEEEEeccc
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTT 261 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~ 261 (504)
|+++|..||.|+|||-+|+-+|+..+.|++.+..+.
T Consensus 50 PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEATK 85 (444)
T COG1220 50 PKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEATK 85 (444)
T ss_pred ccceEEECCCCCcHHHHHHHHHHHhCCCeEEEEeee
Confidence 999999999999999999999999999988876654
No 230
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.41 E-value=5.9e-06 Score=80.81 Aligned_cols=27 Identities=41% Similarity=0.673 Sum_probs=25.5
Q ss_pred cccccccCCCCCcHHHHHHHHHHhcCC
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFLNY 252 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l~~ 252 (504)
.|++||-||||||||.||-||+.+||-
T Consensus 64 GravLlaGppgtGKTAlAlaisqELG~ 90 (456)
T KOG1942|consen 64 GRAVLLAGPPGTGKTALALAISQELGP 90 (456)
T ss_pred CcEEEEecCCCCchhHHHHHHHHHhCC
Confidence 789999999999999999999999964
No 231
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.41 E-value=2.5e-06 Score=94.21 Aligned_cols=48 Identities=38% Similarity=0.505 Sum_probs=41.1
Q ss_pred ccccccccChhHHHHHHHhh--cccccccCCCCCcHHHHHHHHHHhcCCc
Q 037859 206 ATFDTLAMETKKKEEIKKDL--KKGYLLYGPPGTGKSTMIAAMANFLNYD 253 (504)
Q Consensus 206 ~~f~~~~~~~~~k~~i~~~l--~rg~LL~GPpGtGKTsla~aiA~~l~~~ 253 (504)
..++.++++++.++.+...+ +++++|+||||||||++++++|+.++.+
T Consensus 15 ~~~~~viG~~~a~~~l~~a~~~~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 15 RLIDQVIGQEEAVEIIKKAAKQKRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred hhHhhccCHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 45788888888887777666 6789999999999999999999999754
No 232
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.34 E-value=4.2e-06 Score=81.40 Aligned_cols=152 Identities=18% Similarity=0.245 Sum_probs=105.1
Q ss_pred CCCccccccccChhHHHHHHHhhc----ccccccCCCCCcHHHHHHHHHHhc-CCcEE----------------------
Q 037859 203 EHPATFDTLAMETKKKEEIKKDLK----KGYLLYGPPGTGKSTMIAAMANFL-NYDVY---------------------- 255 (504)
Q Consensus 203 ~~p~~f~~~~~~~~~k~~i~~~l~----rg~LL~GPpGtGKTsla~aiA~~l-~~~i~---------------------- 255 (504)
-.|+.|+.+....+....+....- -.+|+|||+|+||-+.+.++-+++ |..+.
T Consensus 7 yrpksl~~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistv 86 (351)
T KOG2035|consen 7 YRPKSLDELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTV 86 (351)
T ss_pred cCcchhhhcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEe
Confidence 467888888888877777766552 358999999999999999998877 21111
Q ss_pred ------EEeccccCChH--HHHHHHHhcc-----------CCeEEEEecccccccccccccccccccccccccCcccccc
Q 037859 256 ------DLELTTVQDNS--ELRSLLIDTS-----------SKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKE 316 (504)
Q Consensus 256 ------~l~~~~~~~~~--~l~~l~~~~~-----------~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (504)
.++.++.+..+ -++.++.+.+ .=-+++|-|+|.+
T Consensus 87 sS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~L--------------------------- 139 (351)
T KOG2035|consen 87 SSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADEL--------------------------- 139 (351)
T ss_pred cccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhh---------------------------
Confidence 11122222111 1344443321 1248999999986
Q ss_pred cccCCCcchhhHHHHHhhhhcCccccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCcCCc
Q 037859 317 KEDGGSKKSKVTLSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDIDSH 396 (504)
Q Consensus 317 ~~~~~~~~~~~~ls~lL~~lDg~~~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~~~~ 396 (504)
.+....+|-.-|+.+.+.| -+|+.+|...++=+++.. |+ ..|.++.|+.++...++...+..+..
T Consensus 140 --------T~dAQ~aLRRTMEkYs~~~----RlIl~cns~SriIepIrS--RC-l~iRvpaps~eeI~~vl~~v~~kE~l 204 (351)
T KOG2035|consen 140 --------TRDAQHALRRTMEKYSSNC----RLILVCNSTSRIIEPIRS--RC-LFIRVPAPSDEEITSVLSKVLKKEGL 204 (351)
T ss_pred --------hHHHHHHHHHHHHHHhcCc----eEEEEecCcccchhHHhh--he-eEEeCCCCCHHHHHHHHHHHHHHhcc
Confidence 2234556666677665444 478889999999999999 87 78999999999999998888765543
No 233
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.33 E-value=3.1e-06 Score=81.26 Aligned_cols=169 Identities=24% Similarity=0.304 Sum_probs=82.7
Q ss_pred hhHHHHHHHhh----cccccccCCCCCcHHHHHHHHHHhcCCc---EEEEeccccCC-----------------------
Q 037859 215 TKKKEEIKKDL----KKGYLLYGPPGTGKSTMIAAMANFLNYD---VYDLELTTVQD----------------------- 264 (504)
Q Consensus 215 ~~~k~~i~~~l----~rg~LL~GPpGtGKTsla~aiA~~l~~~---i~~l~~~~~~~----------------------- 264 (504)
+...+.|.+.+ .+.++||||.|+|||+|++.+.+.+.-. .++++......
T Consensus 5 ~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 84 (234)
T PF01637_consen 5 EKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGI 84 (234)
T ss_dssp HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHH
T ss_pred HHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 33445555555 3568999999999999999999988321 11111111000
Q ss_pred ------------------hHHHHHHH---HhccCCeEEEEecccccccccccccccccccccccccCcccccccccCCCc
Q 037859 265 ------------------NSELRSLL---IDTSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSK 323 (504)
Q Consensus 265 ------------------~~~l~~l~---~~~~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (504)
...+..++ .....+.||+|||+|.+. . +. .
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~-~-~~---------------------------~ 135 (234)
T PF01637_consen 85 SIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLA-I-AS---------------------------E 135 (234)
T ss_dssp HCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGG-B-CT---------------------------T
T ss_pred hcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHh-h-cc---------------------------c
Confidence 01122222 222345999999999974 0 00 1
Q ss_pred chhhHHHHHhhhhcCccccCCCceEEEEecCC-----CCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCcCCcc-
Q 037859 324 KSKVTLSGLLNFIDGLWSASGEERIIVFTTNY-----VDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDIDSHE- 397 (504)
Q Consensus 324 ~~~~~ls~lL~~lDg~~~~~~~~~ivI~tTN~-----~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~~~~~- 397 (504)
.....+..|.+.++.... ...-.+|+++++. ...-.+.+.. |+.. +.+++.+.++...+++..+... ..
T Consensus 136 ~~~~~~~~l~~~~~~~~~-~~~~~~v~~~S~~~~~~~~~~~~~~~~~--~~~~-~~l~~l~~~e~~~~~~~~~~~~-~~~ 210 (234)
T PF01637_consen 136 EDKDFLKSLRSLLDSLLS-QQNVSIVITGSSDSLMEEFLDDKSPLFG--RFSH-IELKPLSKEEAREFLKELFKEL-IKL 210 (234)
T ss_dssp TTHHHHHHHHHHHHH-----TTEEEEEEESSHHHHHHTT-TTSTTTT-----E-EEE----HHHHHHHHHHHHHCC----
T ss_pred chHHHHHHHHHHHhhccc-cCCceEEEECCchHHHHHhhcccCcccc--ccce-EEEeeCCHHHHHHHHHHHHHHh-hcc
Confidence 123456667777766322 2222344444431 0112334444 8866 9999999999999988865332 21
Q ss_pred --hHHHHhcCccCCCCCHHHHH
Q 037859 398 --LYAVIESMPAETNMTPADVA 417 (504)
Q Consensus 398 --~~~~i~~l~~~~~~s~a~i~ 417 (504)
....++.+...+|=.|..|.
T Consensus 211 ~~~~~~~~~i~~~~gG~P~~l~ 232 (234)
T PF01637_consen 211 PFSDEDIEEIYSLTGGNPRYLQ 232 (234)
T ss_dssp ---HHHHHHHHHHHTT-HHHHH
T ss_pred cCCHHHHHHHHHHhCCCHHHHh
Confidence 12233433333444455554
No 234
>PF05729 NACHT: NACHT domain
Probab=98.30 E-value=3.3e-06 Score=76.64 Aligned_cols=64 Identities=25% Similarity=0.491 Sum_probs=40.6
Q ss_pred ccccccCCCCCcHHHHHHHHHHhcCC--------c-EEEEeccccCChH---HHHHHH------------------Hhcc
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANFLNY--------D-VYDLELTTVQDNS---ELRSLL------------------IDTS 276 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~l~~--------~-i~~l~~~~~~~~~---~l~~l~------------------~~~~ 276 (504)
|-++++|+||+|||++++.++..+.. . ++.+.+....... .+...+ ....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKN 80 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcC
Confidence 34789999999999999999977621 1 2344444332111 222222 2234
Q ss_pred CCeEEEEecccccc
Q 037859 277 SKSILVIEDIDCSL 290 (504)
Q Consensus 277 ~~~Il~iDeiD~~~ 290 (504)
.+.+|+||.+|.+.
T Consensus 81 ~~~llilDglDE~~ 94 (166)
T PF05729_consen 81 KRVLLILDGLDELE 94 (166)
T ss_pred CceEEEEechHhcc
Confidence 67899999999863
No 235
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.29 E-value=5.3e-06 Score=95.61 Aligned_cols=134 Identities=19% Similarity=0.277 Sum_probs=98.0
Q ss_pred HHHHHhh--cccccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccCChHHHHHHHHh--------------------cc
Q 037859 219 EEIKKDL--KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQDNSELRSLLID--------------------TS 276 (504)
Q Consensus 219 ~~i~~~l--~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~~l~~l~~~--------------------~~ 276 (504)
.+++..+ .+++||.|.||+|||+|+.|+|+..|..++.++++... +|..+|.. ..
T Consensus 1534 ~rVlRAmqv~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQT---dL~DLfGsd~Pve~~Gef~w~dapfL~amr 1610 (4600)
T COG5271 1534 RRVLRAMQVGKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQT---DLCDLFGSDLPVEEGGEFRWMDAPFLHAMR 1610 (4600)
T ss_pred HHHHHHHhcCCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccc---hHHHHhCCCCCcccCceeEecccHHHHHhh
Confidence 3455555 89999999999999999999999999999999998763 35555533 23
Q ss_pred CCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCcc----------ccCCCc
Q 037859 277 SKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLW----------SASGEE 346 (504)
Q Consensus 277 ~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~----------~~~~~~ 346 (504)
...-+++||+.-. ++.++-+|-..+|.-. -.+.++
T Consensus 1611 ~G~WVlLDEiNLa-----------------------------------SQSVlEGLNacLDhR~eayIPEld~~f~~Hpn 1655 (4600)
T COG5271 1611 DGGWVLLDEINLA-----------------------------------SQSVLEGLNACLDHRREAYIPELDKTFDVHPN 1655 (4600)
T ss_pred cCCEEEeehhhhh-----------------------------------HHHHHHHHHHHHhhccccccccccceeeccCC
Confidence 5567889999753 3345666655555321 123344
Q ss_pred eEEEEecCCC------CCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCc
Q 037859 347 RIIVFTTNYV------DKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDI 393 (504)
Q Consensus 347 ~ivI~tTN~~------e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~ 393 (504)
..|++|-|+- ..||..++. || ..|+|+..+.+....|++..++.
T Consensus 1656 frVFAaqNPq~qggGRKgLPkSF~n--RF-svV~~d~lt~dDi~~Ia~~~yp~ 1705 (4600)
T COG5271 1656 FRVFAAQNPQDQGGGRKGLPKSFLN--RF-SVVKMDGLTTDDITHIANKMYPQ 1705 (4600)
T ss_pred eeeeeecCchhcCCCcccCCHHHhh--hh-heEEecccccchHHHHHHhhCCc
Confidence 5566666643 359999999 99 58999999999988888877653
No 236
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=2.9e-06 Score=95.28 Aligned_cols=111 Identities=22% Similarity=0.369 Sum_probs=73.8
Q ss_pred ccccChhHHHHHHHhh-------cc--c---ccccCCCCCcHHHHHHHHHHhc---CCcEEEEeccccC-------C---
Q 037859 210 TLAMETKKKEEIKKDL-------KK--G---YLLYGPPGTGKSTMIAAMANFL---NYDVYDLELTTVQ-------D--- 264 (504)
Q Consensus 210 ~~~~~~~~k~~i~~~l-------~r--g---~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~~-------~--- 264 (504)
.|+++.+.-..|-+.+ .+ + +||.||.|+|||-||+|+|.++ .-.++.+|++... +
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskligsp~g 642 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLIGSPPG 642 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhccCCCcc
Confidence 4566666666666666 11 2 7899999999999999999988 3458888888621 1
Q ss_pred ---hHHHHHHHHhc--cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCc
Q 037859 265 ---NSELRSLLIDT--SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGL 339 (504)
Q Consensus 265 ---~~~l~~l~~~~--~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~ 339 (504)
.+..-.+.... ...+||||||||.. ....++.|+..+|..
T Consensus 643 yvG~e~gg~LteavrrrP~sVVLfdeIEkA-----------------------------------h~~v~n~llq~lD~G 687 (898)
T KOG1051|consen 643 YVGKEEGGQLTEAVKRRPYSVVLFEEIEKA-----------------------------------HPDVLNILLQLLDRG 687 (898)
T ss_pred cccchhHHHHHHHHhcCCceEEEEechhhc-----------------------------------CHHHHHHHHHHHhcC
Confidence 12222333333 35699999999974 234667777777643
Q ss_pred cccCC-------CceEEEEecCC
Q 037859 340 WSASG-------EERIIVFTTNY 355 (504)
Q Consensus 340 ~~~~~-------~~~ivI~tTN~ 355 (504)
.-..+ .+.|||||+|.
T Consensus 688 rltDs~Gr~Vd~kN~I~IMTsn~ 710 (898)
T KOG1051|consen 688 RLTDSHGREVDFKNAIFIMTSNV 710 (898)
T ss_pred ccccCCCcEeeccceEEEEeccc
Confidence 21111 34799999884
No 237
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.24 E-value=1e-05 Score=87.00 Aligned_cols=146 Identities=16% Similarity=0.197 Sum_probs=90.3
Q ss_pred cccccChhHHHHHHHhh------cccccccCCCCCcHHHHHHHHHHhc---CCcEEEEeccccCChHHHHH-HHHh----
Q 037859 209 DTLAMETKKKEEIKKDL------KKGYLLYGPPGTGKSTMIAAMANFL---NYDVYDLELTTVQDNSELRS-LLID---- 274 (504)
Q Consensus 209 ~~~~~~~~~k~~i~~~l------~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~~~~~~l~~-l~~~---- 274 (504)
..+++.....+.+...+ ...+|+.|++|||||++|+++.... +.+++.++|..+.. ..+.. +|..
T Consensus 138 ~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~-~~~~~~lfg~~~g~ 216 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPK-DLIESELFGHEKGA 216 (469)
T ss_pred ccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCH-HHHHHHhcCCCCCC
Confidence 34455444444444443 4569999999999999999998876 46899999998843 33333 3221
Q ss_pred -------------ccCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccc
Q 037859 275 -------------TSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWS 341 (504)
Q Consensus 275 -------------~~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~ 341 (504)
...+..|||||||.+- ......|+..++.-.-
T Consensus 217 ~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~-----------------------------------~~~q~~L~~~l~~~~~ 261 (469)
T PRK10923 217 FTGANTIRQGRFEQADGGTLFLDEIGDMP-----------------------------------LDVQTRLLRVLADGQF 261 (469)
T ss_pred CCCCCcCCCCCeeECCCCEEEEeccccCC-----------------------------------HHHHHHHHHHHhcCcE
Confidence 2245689999999862 2244456666543210
Q ss_pred -c------CCCceEEEEecCCC-------CCCChhhhcCCCc-eeEEEecCC--CHHHHHHHHHHhcC
Q 037859 342 -A------SGEERIIVFTTNYV-------DKLDPALIRRGRM-DKHIEMSYC--CFEAFKVLAKNYLD 392 (504)
Q Consensus 342 -~------~~~~~ivI~tTN~~-------e~Ld~ALlRpGR~-d~~I~~~~p--~~e~~~~i~~~~l~ 392 (504)
. ....+-+|+||+.. ..+.+.|.. |+ ..+|.+|.. ..++...|+..|+.
T Consensus 262 ~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~~~~i~~PpLreR~~Di~~l~~~~l~ 327 (469)
T PRK10923 262 YRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH--RLNVIRVHLPPLRERREDIPRLARHFLQ 327 (469)
T ss_pred EeCCCCCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHH--HhcceeecCCCcccchhhHHHHHHHHHH
Confidence 0 01124577777642 346677777 77 456666654 34566677777763
No 238
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.21 E-value=5.3e-06 Score=90.81 Aligned_cols=120 Identities=18% Similarity=0.169 Sum_probs=84.1
Q ss_pred ccccccCCCCCcHHHHHHHHHHhcCC--cEEEEeccc----cCChHHHHHHHHh-----------ccCCeEEEEeccccc
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANFLNY--DVYDLELTT----VQDNSELRSLLID-----------TSSKSILVIEDIDCS 289 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~l~~--~i~~l~~~~----~~~~~~l~~l~~~-----------~~~~~Il~iDeiD~~ 289 (504)
.|+|+-|++|||||+++++++..+.. ++..+-.+. +.+.-+|...+.. ...+.||||||+..+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~GvL~lDe~n~~ 105 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADGGVLVLAMAERL 105 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccCCEEEecCcccC
Confidence 68999999999999999999999854 666554332 1222333333321 235689999999875
Q ss_pred ccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhc---------CccccCCCceEEEEecCCC---C
Q 037859 290 LDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFID---------GLWSASGEERIIVFTTNYV---D 357 (504)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lD---------g~~~~~~~~~ivI~tTN~~---e 357 (504)
...+++.|+..|+ |..-......++|+|-|.. +
T Consensus 106 -----------------------------------~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~ 150 (584)
T PRK13406 106 -----------------------------------EPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDE 150 (584)
T ss_pred -----------------------------------CHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhccc
Confidence 3458888998885 2222223345677765533 5
Q ss_pred CCChhhhcCCCceeEEEecCCCHHHH
Q 037859 358 KLDPALIRRGRMDKHIEMSYCCFEAF 383 (504)
Q Consensus 358 ~Ld~ALlRpGR~d~~I~~~~p~~e~~ 383 (504)
.|+++|+. ||+++|.+++++..+.
T Consensus 151 ~L~~~lLD--Rf~l~v~v~~~~~~~~ 174 (584)
T PRK13406 151 RAPAALAD--RLAFHLDLDGLALRDA 174 (584)
T ss_pred CCCHHhHh--heEEEEEcCCCChHHh
Confidence 69999999 9999999999987654
No 239
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.20 E-value=1.7e-06 Score=89.48 Aligned_cols=93 Identities=17% Similarity=0.383 Sum_probs=58.0
Q ss_pred cccccccCCCCCcHHHHHHHHHHhcCC------cEEEE--ec----cccC-ChHHHHHHHHhccCC-eEEEEeccccccc
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFLNY------DVYDL--EL----TTVQ-DNSELRSLLIDTSSK-SILVIEDIDCSLD 291 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l~~------~i~~l--~~----~~~~-~~~~l~~l~~~~~~~-~Il~iDeiD~~~~ 291 (504)
++|++||||+|+|||+|.-...+.+.. ++... +. .... ...-+..+.....+. .+|+|||+..-
T Consensus 62 ~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~~~~~lLcfDEF~V~-- 139 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELAKESRLLCFDEFQVT-- 139 (362)
T ss_pred CceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHHhcCCEEEEeeeecc--
Confidence 799999999999999999999887643 11110 00 0001 112233333333444 49999999862
Q ss_pred ccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccCCCceEEEEecCCC
Q 037859 292 LTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERIIVFTTNYV 356 (504)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~~~~ivI~tTN~~ 356 (504)
+......+..|+..+ + ..++++|+|+|++
T Consensus 140 ------------------------------DiaDAmil~rLf~~l---~---~~gvvlVaTSN~~ 168 (362)
T PF03969_consen 140 ------------------------------DIADAMILKRLFEAL---F---KRGVVLVATSNRP 168 (362)
T ss_pred ------------------------------chhHHHHHHHHHHHH---H---HCCCEEEecCCCC
Confidence 122456777777765 1 2458999999964
No 240
>PF08740 BCS1_N: BCS1 N terminal; InterPro: IPR014851 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. This domain is found at the N terminus of the mitochondrial BSC1 subfamily, belonging to the AAA ATPase family. At2g21640 and BCS1 are both highly stress responsive genes which encode mitochondrial proteins. The promoter of BCS1 was not responsive to H2O2 or rotenone, but highly responsive to salicylic acid (SA). The SA dependent pathway represented by BCS1 is one of at least three distinctive pathways to regulate mitochondrial stress response at a transcriptional level []. The BCS1 product is a mitochondrial protein required for the assembly of respiratory complex III []. BCS1, a component of the inner membrane of mitochondria, belongs to the group of proteins with internal, noncleavable import signals. It has a transmembrane domain (amino acid residues 51 to 68), a presequence type helix (residues 69 to 83), and an import auxiliary region (residues 84 to 126) [].
Probab=98.18 E-value=6.5e-05 Score=70.58 Aligned_cols=130 Identities=16% Similarity=0.265 Sum_probs=77.7
Q ss_pred CccHHHHHHHHHHhcc-cCCCCCceEEEeeCCCCc----------------------eEEEecCCCceeeeecCeEEEEE
Q 037859 65 KRSEAFSAIQNYLSTT-ASLHATRFKADVVKDSQS----------------------IVLSMDDRQEVTDEFKGIKVWWV 121 (504)
Q Consensus 65 ~~n~~y~~~~~~ls~~-~~~~~~~l~~~~~~~~~~----------------------~~~~~~~~~~v~d~f~g~~~~w~ 121 (504)
..|++|++++.||+++ ....++++.+.+...+.. +.+.-..+ .-.--|+|..++..
T Consensus 33 ~~D~~Y~~lm~Wls~q~~~~~~r~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~G-~h~F~y~G~~~~~~ 111 (187)
T PF08740_consen 33 SDDEAYDWLMRWLSSQPFSKRSRHLSATTRSNSSWDDDESDDEDSWDTNTSDDKKKPIRFTPSPG-THWFWYKGRWFWFS 111 (187)
T ss_pred CCCHHHHHHHHHHhhCCcccccceeEEEeecccccccccccccchhccccccCCcCCeEEEeCCC-CEEEEECCEEEEEE
Confidence 3799999999999984 566789999888543210 11111111 11112344333222
Q ss_pred EeeecCCCCcccccCCCCCeeEEEEEEecccchhhhhhhHHHHHhhhhhHHhhhccce--ecccCCCCCccCccCcccee
Q 037859 122 LGKNIPKTQSFSFYPATGEKRYYRLTFHKSHRELITGPYVNHVLAGGKAITVKNRQRK--LYSNNPSKNWYGWRSTKWSH 199 (504)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~w~~ 199 (504)
... +....+...+ .+.+.++|++..+.++. |+.+|++|++...++.+.+ ||.+.+.. ..|..
T Consensus 112 R~~---~~~~~~~~~~-~~~e~l~l~~lg~s~~~-----l~~ll~ear~~~~~~~~~~t~Iy~~~~~~-------~~W~~ 175 (187)
T PF08740_consen 112 RQR---ESNSYNSWTG-APDETLTLSCLGRSPKP-----LKDLLEEAREYYLKKQKGKTTIYRADGSE-------YRWRR 175 (187)
T ss_pred EEe---ccccccccCC-CCceEEEEEEecCCHHH-----HHHHHHHHHHHHHHhcCCcEEEEeCCCCC-------CCCcC
Confidence 222 1111111111 23578888888887764 5899999999998776554 78776432 14877
Q ss_pred eecCCCcccccc
Q 037859 200 VFFEHPATFDTL 211 (504)
Q Consensus 200 ~~~~~p~~f~~~ 211 (504)
+.-..++++++|
T Consensus 176 ~~~r~~RplsTV 187 (187)
T PF08740_consen 176 VASRPKRPLSTV 187 (187)
T ss_pred CCCcCCCCCCCC
Confidence 777778888875
No 241
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.16 E-value=1.3e-05 Score=85.56 Aligned_cols=63 Identities=19% Similarity=0.261 Sum_probs=47.3
Q ss_pred cccccccCCCCCcHHHHHHHHHHhc---CCcEEEEeccccCChHHHHHH-HHh-----------------ccCCeEEEEe
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFL---NYDVYDLELTTVQDNSELRSL-LID-----------------TSSKSILVIE 284 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~~~~~~l~~l-~~~-----------------~~~~~Il~iD 284 (504)
...++++|++||||+.+|+++.... +.+++.++|..+.. ..+... |.. ...+..||||
T Consensus 162 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~-~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ 240 (445)
T TIGR02915 162 DITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPE-NLLESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLD 240 (445)
T ss_pred CCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCCh-HHHHHHhcCCCCCCcCCCccCCCCceeECCCCEEEEe
Confidence 4568999999999999999997765 46899999998743 333332 221 1346789999
Q ss_pred ccccc
Q 037859 285 DIDCS 289 (504)
Q Consensus 285 eiD~~ 289 (504)
|||.+
T Consensus 241 ~i~~l 245 (445)
T TIGR02915 241 EIGDL 245 (445)
T ss_pred chhhC
Confidence 99986
No 242
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.15 E-value=1.9e-05 Score=84.75 Aligned_cols=129 Identities=20% Similarity=0.211 Sum_probs=82.2
Q ss_pred cccccccCCCCCcHHHHHHHHHHhc---CCcEEEEeccccCChHHHHHHH-H-----------------hccCCeEEEEe
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFL---NYDVYDLELTTVQDNSELRSLL-I-----------------DTSSKSILVIE 284 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~~~~~~l~~l~-~-----------------~~~~~~Il~iD 284 (504)
...+++.|.+||||+++|+++.... +.+++.++|..+.. ..+...+ . ....+..||||
T Consensus 157 ~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~-~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ 235 (463)
T TIGR01818 157 DITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPK-DLIESELFGHEKGAFTGANTRRQGRFEQADGGTLFLD 235 (463)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCH-HHHHHHhcCCCCCCCCCcccCCCCcEEECCCCeEEEE
Confidence 5568999999999999999998764 46899999998743 3333332 2 12346789999
Q ss_pred cccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCcc-cc------CCCceEEEEecCCC-
Q 037859 285 DIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLW-SA------SGEERIIVFTTNYV- 356 (504)
Q Consensus 285 eiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~-~~------~~~~~ivI~tTN~~- 356 (504)
|||.+- ......|+..++.-. .. ...++-+|+|||..
T Consensus 236 ei~~l~-----------------------------------~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l 280 (463)
T TIGR01818 236 EIGDMP-----------------------------------LDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNL 280 (463)
T ss_pred chhhCC-----------------------------------HHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCH
Confidence 999861 223455665554211 00 01134577777643
Q ss_pred ------CCCChhhhcCCCce-eEEEecCCC--HHHHHHHHHHhcC
Q 037859 357 ------DKLDPALIRRGRMD-KHIEMSYCC--FEAFKVLAKNYLD 392 (504)
Q Consensus 357 ------e~Ld~ALlRpGR~d-~~I~~~~p~--~e~~~~i~~~~l~ 392 (504)
..+.+.|.. |+. .+|++|... .++...++..|+.
T Consensus 281 ~~~~~~~~f~~~L~~--rl~~~~i~lPpLr~R~~Di~~l~~~~l~ 323 (463)
T TIGR01818 281 EALVRQGKFREDLFH--RLNVIRIHLPPLRERREDIPRLARHFLA 323 (463)
T ss_pred HHHHHcCCcHHHHHH--HhCcceecCCCcccchhhHHHHHHHHHH
Confidence 234456665 554 467777654 5777788888773
No 243
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.15 E-value=1.5e-05 Score=85.32 Aligned_cols=63 Identities=21% Similarity=0.294 Sum_probs=47.1
Q ss_pred cccccccCCCCCcHHHHHHHHHHhc---CCcEEEEeccccCChHHHHH-HHHh-----------------ccCCeEEEEe
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFL---NYDVYDLELTTVQDNSELRS-LLID-----------------TSSKSILVIE 284 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~~~~~~l~~-l~~~-----------------~~~~~Il~iD 284 (504)
...+|++|++||||+++|+++.... +.+++.++|..+.. ..+.. +|.. .....+||||
T Consensus 166 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~-~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ld 244 (457)
T PRK11361 166 QASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPE-SLLESELFGHEKGAFTGAQTLRQGLFERANEGTLLLD 244 (457)
T ss_pred CcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCH-HHHHHHhcCCCCCCCCCCCCCCCCceEECCCCEEEEe
Confidence 4569999999999999999997654 56899999998853 22332 2221 1245799999
Q ss_pred ccccc
Q 037859 285 DIDCS 289 (504)
Q Consensus 285 eiD~~ 289 (504)
|||.+
T Consensus 245 ~i~~l 249 (457)
T PRK11361 245 EIGEM 249 (457)
T ss_pred chhhC
Confidence 99986
No 244
>PHA02624 large T antigen; Provisional
Probab=98.14 E-value=6.6e-06 Score=88.68 Aligned_cols=121 Identities=20% Similarity=0.261 Sum_probs=76.5
Q ss_pred cccccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccCChHHHHHHHHhccCCeEEEEeccccccccccccccccccccc
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQDNSELRSLLIDTSSKSILVIEDIDCSLDLTGQREKKKEKDED 305 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~~l~~l~~~~~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~ 305 (504)
++.+|||||||||||+++.+|++.++-.+..++... +.+.--+.-+...-+.+|||+-.-+- ...
T Consensus 431 k~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt----~ks~FwL~pl~D~~~~l~dD~t~~~~---~~~-------- 495 (647)
T PHA02624 431 RRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPP----DKLNFELGCAIDQFMVVFEDVKGQPA---DNK-------- 495 (647)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCc----chhHHHhhhhhhceEEEeeecccccc---ccc--------
Confidence 457999999999999999999999965555555332 23333444455678999999964220 000
Q ss_pred ccccCcccccccccCCCcchhhHHHHHhhhhcCccccC-----CCce-----EEEEecCCCCCCChhhhcCCCceeEEEe
Q 037859 306 KEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSAS-----GEER-----IIVFTTNYVDKLDPALIRRGRMDKHIEM 375 (504)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~-----~~~~-----ivI~tTN~~e~Ld~ALlRpGR~d~~I~~ 375 (504)
.-..+..-..+..|-|.|||-...+ ...+ -+|.|||. ..||..|.- ||-.++.|
T Consensus 496 -------------~Lp~G~~~dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~--Rf~~~~~F 559 (647)
T PHA02624 496 -------------DLPSGQGMNNLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKA--RFAKVLDF 559 (647)
T ss_pred -------------cCCcccccchhhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHH--HHHHhccc
Confidence 0000111223567888899861110 0111 36789986 467888888 99888887
Q ss_pred cC
Q 037859 376 SY 377 (504)
Q Consensus 376 ~~ 377 (504)
..
T Consensus 560 ~~ 561 (647)
T PHA02624 560 KP 561 (647)
T ss_pred cc
Confidence 54
No 245
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.12 E-value=2.4e-05 Score=78.04 Aligned_cols=65 Identities=18% Similarity=0.313 Sum_probs=44.4
Q ss_pred cccccccCCCCCcHHHHHHHHHHhc---------CCcEEEEeccccCChHHHHH-HHH----------------------
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFL---------NYDVYDLELTTVQDNSELRS-LLI---------------------- 273 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l---------~~~i~~l~~~~~~~~~~l~~-l~~---------------------- 273 (504)
..++||+|++|.|||++++..+... ..|++.+....--+...+-. ++.
T Consensus 61 mp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~l 140 (302)
T PF05621_consen 61 MPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRL 140 (302)
T ss_pred CCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHH
Confidence 3579999999999999999998644 24677777654433332211 111
Q ss_pred -hccCCeEEEEecccccc
Q 037859 274 -DTSSKSILVIEDIDCSL 290 (504)
Q Consensus 274 -~~~~~~Il~iDeiD~~~ 290 (504)
..-+.-+|+|||++.++
T Consensus 141 lr~~~vrmLIIDE~H~lL 158 (302)
T PF05621_consen 141 LRRLGVRMLIIDEFHNLL 158 (302)
T ss_pred HHHcCCcEEEeechHHHh
Confidence 11255699999999975
No 246
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.12 E-value=8.1e-05 Score=78.97 Aligned_cols=152 Identities=20% Similarity=0.225 Sum_probs=96.9
Q ss_pred cCCCccccccccChhHHHHHHHhh------cccccccCCCCCcHHHHHHHHHHhc---CCcEEEEeccccCChHHHH-HH
Q 037859 202 FEHPATFDTLAMETKKKEEIKKDL------KKGYLLYGPPGTGKSTMIAAMANFL---NYDVYDLELTTVQDNSELR-SL 271 (504)
Q Consensus 202 ~~~p~~f~~~~~~~~~k~~i~~~l------~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~~~~~~l~-~l 271 (504)
+.+.-+|+++++......++++.+ .-.+|+.|.+||||..+|++|=+.. +-|++.+||..+-.. -|. .+
T Consensus 238 ~~a~y~f~~Iig~S~~m~~~~~~akr~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~-LlESEL 316 (560)
T COG3829 238 LKAKYTFDDIIGESPAMLRVLELAKRIAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPET-LLESEL 316 (560)
T ss_pred cccccchhhhccCCHHHHHHHHHHHhhcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCHH-HHHHHH
Confidence 455667899998888777777766 4559999999999999999997655 679999999988321 111 12
Q ss_pred HH-------h-----------ccCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHh
Q 037859 272 LI-------D-----------TSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLL 333 (504)
Q Consensus 272 ~~-------~-----------~~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL 333 (504)
|. . .++..-||+|||-.+ +......||
T Consensus 317 FGye~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgem-----------------------------------pl~LQaKLL 361 (560)
T COG3829 317 FGYEKGAFTGASKGGKPGLFELANGGTLFLDEIGEM-----------------------------------PLPLQAKLL 361 (560)
T ss_pred hCcCCccccccccCCCCcceeeccCCeEEehhhccC-----------------------------------CHHHHHHHH
Confidence 21 1 134567999999764 234566777
Q ss_pred hhhcC-------ccccCCCceEEEEecCCC-------CCCChhhhcCCCceeEEEecCC----CHHHHHHHHHHhcC
Q 037859 334 NFIDG-------LWSASGEERIIVFTTNYV-------DKLDPALIRRGRMDKHIEMSYC----CFEAFKVLAKNYLD 392 (504)
Q Consensus 334 ~~lDg-------~~~~~~~~~ivI~tTN~~-------e~Ld~ALlRpGR~d~~I~~~~p----~~e~~~~i~~~~l~ 392 (504)
..|.. -.....-.+-||+|||.. ..+-..|.- |+. .+.+..| ..+....|+..|+.
T Consensus 362 RVLQEkei~rvG~t~~~~vDVRIIAATN~nL~~~i~~G~FReDLYY--RLN-V~~i~iPPLReR~eDI~~L~~~Fl~ 435 (560)
T COG3829 362 RVLQEKEIERVGGTKPIPVDVRIIAATNRNLEKMIAEGTFREDLYY--RLN-VIPITIPPLRERKEDIPLLAEYFLD 435 (560)
T ss_pred HHHhhceEEecCCCCceeeEEEEEeccCcCHHHHHhcCcchhhhee--eec-eeeecCCCcccCcchHHHHHHHHHH
Confidence 76642 111223446799999963 223333433 442 3344444 34555556666653
No 247
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=4.2e-05 Score=86.21 Aligned_cols=181 Identities=18% Similarity=0.284 Sum_probs=111.4
Q ss_pred ccccccC-hhHHHHHHHhh----cccccccCCCCCcHHHHHHHHHHhc----------CCcEEEEeccccCC--------
Q 037859 208 FDTLAME-TKKKEEIKKDL----KKGYLLYGPPGTGKSTMIAAMANFL----------NYDVYDLELTTVQD-------- 264 (504)
Q Consensus 208 f~~~~~~-~~~k~~i~~~l----~rg~LL~GPpGtGKTsla~aiA~~l----------~~~i~~l~~~~~~~-------- 264 (504)
++.+++. ++..+++++-+ ++.-+|.|.||+|||.++.-+|... +..++.+++..+..
T Consensus 185 ldPvigr~deeirRvi~iL~Rrtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~ 264 (898)
T KOG1051|consen 185 LDPVIGRHDEEIRRVIEILSRKTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEF 264 (898)
T ss_pred CCCccCCchHHHHHHHHHHhccCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHH
Confidence 5566665 66677777777 6789999999999999999999865 45677777765422
Q ss_pred hHHHHHHHHh---ccCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccc
Q 037859 265 NSELRSLLID---TSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWS 341 (504)
Q Consensus 265 ~~~l~~l~~~---~~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~ 341 (504)
..++..+..+ .....||||||++.+.. .. .........++|..+-+
T Consensus 265 E~rlk~l~k~v~~~~~gvILfigelh~lvg---~g-------------------------~~~~~~d~~nlLkp~L~--- 313 (898)
T KOG1051|consen 265 EERLKELLKEVESGGGGVILFLGELHWLVG---SG-------------------------SNYGAIDAANLLKPLLA--- 313 (898)
T ss_pred HHHHHHHHHHHhcCCCcEEEEecceeeeec---CC-------------------------CcchHHHHHHhhHHHHh---
Confidence 2345555543 44678999999999752 11 11123344455554422
Q ss_pred cCCCceEEEEecCCCCC-----CChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCc--CCcchHHHHhcCccCCCCCHH
Q 037859 342 ASGEERIIVFTTNYVDK-----LDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDI--DSHELYAVIESMPAETNMTPA 414 (504)
Q Consensus 342 ~~~~~~ivI~tTN~~e~-----Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~--~~~~~~~~i~~l~~~~~~s~a 414 (504)
.++.-+|+||...+. -||||-| ||+ -+.++.|+.+....|+...... .+|........+.....++..
T Consensus 314 --rg~l~~IGatT~e~Y~k~iekdPalEr--rw~-l~~v~~pS~~~~~~iL~~l~~~~e~~hg~~~s~~a~~~a~~~s~~ 388 (898)
T KOG1051|consen 314 --RGGLWCIGATTLETYRKCIEKDPALER--RWQ-LVLVPIPSVENLSLILPGLSERYEVHHGVRISDESLFSAAQLSAR 388 (898)
T ss_pred --cCCeEEEecccHHHHHHHHhhCcchhh--Ccc-eeEeccCcccchhhhhhhhhhhhccccCCcccccccccccchhhh
Confidence 233678886653221 3899999 997 5778999877655555443322 112222222333333456666
Q ss_pred HHHHhhCCCC
Q 037859 415 DVAENLMPKC 424 (504)
Q Consensus 415 ~i~~~l~~~~ 424 (504)
++...+++.|
T Consensus 389 ~~t~r~lpd~ 398 (898)
T KOG1051|consen 389 YITLSFLPDC 398 (898)
T ss_pred hcccCcCchh
Confidence 6666666544
No 248
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.07 E-value=1.6e-06 Score=88.96 Aligned_cols=146 Identities=22% Similarity=0.218 Sum_probs=79.7
Q ss_pred cccChhHHHHHHHhh--------c-----c---cccccCCCCCcHHHHHHHHHHhcCCcEEEEeccc----c-----CC-
Q 037859 211 LAMETKKKEEIKKDL--------K-----K---GYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTT----V-----QD- 264 (504)
Q Consensus 211 ~~~~~~~k~~i~~~l--------~-----r---g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~----~-----~~- 264 (504)
+.+.+..|..|+-.+ + | .+||.|.||||||.|.+.++......+|.---+. + .+
T Consensus 26 i~g~~~iK~aill~L~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v~~~g~~~s~~gLta~~~~d~ 105 (331)
T PF00493_consen 26 IYGHEDIKKAILLQLFGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSVYTSGKGSSAAGLTASVSRDP 105 (331)
T ss_dssp TTT-HHHHHHHCCCCTT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEEEEECCGSTCCCCCEEECCCG
T ss_pred CcCcHHHHHHHHHHHHhccccccccccccccccceeeccchhhhHHHHHHHHHhhCCceEEECCCCcccCCccceecccc
Confidence 345566676666555 1 2 3899999999999999998776655555331110 1 11
Q ss_pred ---hHHHHHHHHhccCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCc--
Q 037859 265 ---NSELRSLLIDTSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGL-- 339 (504)
Q Consensus 265 ---~~~l~~l~~~~~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~-- 339 (504)
+-.+..-..-...+.|++|||+|.+- ......|+..|+.-
T Consensus 106 ~~~~~~leaGalvlad~GiccIDe~dk~~-----------------------------------~~~~~~l~eaMEqq~i 150 (331)
T PF00493_consen 106 VTGEWVLEAGALVLADGGICCIDEFDKMK-----------------------------------EDDRDALHEAMEQQTI 150 (331)
T ss_dssp GTSSECEEE-HHHHCTTSEEEECTTTT-------------------------------------CHHHHHHHHHHHCSCE
T ss_pred ccceeEEeCCchhcccCceeeeccccccc-----------------------------------chHHHHHHHHHHcCee
Confidence 00011000112478999999999851 11344555555421
Q ss_pred -------cccCCCceEEEEecCCCC-------------CCChhhhcCCCceeEEEe-cCCCHHHHHHHHHHhcCc
Q 037859 340 -------WSASGEERIIVFTTNYVD-------------KLDPALIRRGRMDKHIEM-SYCCFEAFKVLAKNYLDI 393 (504)
Q Consensus 340 -------~~~~~~~~ivI~tTN~~e-------------~Ld~ALlRpGR~d~~I~~-~~p~~e~~~~i~~~~l~~ 393 (504)
...-.-..-|++|+|... .++++|+. |||..+.+ +.++.+.=..|+++.+..
T Consensus 151 si~kagi~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLS--RFDLif~l~D~~d~~~D~~la~~il~~ 223 (331)
T PF00493_consen 151 SIAKAGIVTTLNARCSVLAAANPKFGRYDPNKSLSENINLPPPLLS--RFDLIFLLRDKPDEEEDERLAEHILDS 223 (331)
T ss_dssp EECTSSSEEEEE---EEEEEE--TT--S-TTS-CGCCT-S-CCCHC--C-SEEECC--TTT-HHHHHHHHHHHTT
T ss_pred ccchhhhcccccchhhhHHHHhhhhhhcchhhhhHHhcccchhhHh--hcCEEEEeccccccccccccceEEEec
Confidence 110111235888888765 47899999 99988765 667777666777766643
No 249
>PRK15115 response regulator GlrR; Provisional
Probab=98.06 E-value=2.8e-05 Score=83.01 Aligned_cols=63 Identities=21% Similarity=0.298 Sum_probs=47.1
Q ss_pred cccccccCCCCCcHHHHHHHHHHhc---CCcEEEEeccccCChHHHHH-HHH-----------------hccCCeEEEEe
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFL---NYDVYDLELTTVQDNSELRS-LLI-----------------DTSSKSILVIE 284 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~~~~~~l~~-l~~-----------------~~~~~~Il~iD 284 (504)
...++++|++||||+++|+++.... +.+++.++|..+.. ..+.. +|. +......||||
T Consensus 157 ~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~-~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ 235 (444)
T PRK15115 157 DVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPE-QLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLD 235 (444)
T ss_pred CCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCH-HHHHHHhcCCCcCCCCCCccCCCCcEEECCCCEEEEE
Confidence 4568999999999999999998764 57899999998743 23332 222 12345789999
Q ss_pred ccccc
Q 037859 285 DIDCS 289 (504)
Q Consensus 285 eiD~~ 289 (504)
|||.+
T Consensus 236 ~i~~l 240 (444)
T PRK15115 236 EIGDM 240 (444)
T ss_pred ccccC
Confidence 99986
No 250
>PHA00729 NTP-binding motif containing protein
Probab=98.06 E-value=5.1e-06 Score=79.86 Aligned_cols=27 Identities=22% Similarity=0.426 Sum_probs=23.6
Q ss_pred ccccccCCCCCcHHHHHHHHHHhcCCc
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANFLNYD 253 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~l~~~ 253 (504)
..++++||||||||++|.+||..++..
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~~~ 44 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVFWK 44 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 358999999999999999999987643
No 251
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.02 E-value=2.8e-05 Score=77.62 Aligned_cols=132 Identities=23% Similarity=0.198 Sum_probs=70.0
Q ss_pred HHHHHHHhh------cccccccCCCCCcHHHHHHHHHHh--c--CCc-EEEEeccccCChH-------------------
Q 037859 217 KKEEIKKDL------KKGYLLYGPPGTGKSTMIAAMANF--L--NYD-VYDLELTTVQDNS------------------- 266 (504)
Q Consensus 217 ~k~~i~~~l------~rg~LL~GPpGtGKTsla~aiA~~--l--~~~-i~~l~~~~~~~~~------------------- 266 (504)
.+++|.+.| .+-+.++|++|+|||+||..+++. . .++ ++.+++....+..
T Consensus 4 ~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 83 (287)
T PF00931_consen 4 EIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISD 83 (287)
T ss_dssp HHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSC
T ss_pred HHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccccccccccccccccccccccc
Confidence 345555555 334789999999999999999977 3 222 3344444321111
Q ss_pred -----HHHHHHHhc--cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCc
Q 037859 267 -----ELRSLLIDT--SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGL 339 (504)
Q Consensus 267 -----~l~~l~~~~--~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~ 339 (504)
.+...+.+. ..+++|+|||++... .+..+...+-.
T Consensus 84 ~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~-------------------------------------~~~~l~~~~~~- 125 (287)
T PF00931_consen 84 PKDIEELQDQLRELLKDKRCLLVLDDVWDEE-------------------------------------DLEELREPLPS- 125 (287)
T ss_dssp CSSHHHHHHHHHHHHCCTSEEEEEEEE-SHH-------------------------------------HH-------HC-
T ss_pred ccccccccccchhhhccccceeeeeeecccc-------------------------------------ccccccccccc-
Confidence 111222111 358999999998631 22222222111
Q ss_pred cccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCc
Q 037859 340 WSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDI 393 (504)
Q Consensus 340 ~~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~ 393 (504)
...+.-||.||..... -..+- .-+..++++..+.++-..++..+...
T Consensus 126 ---~~~~~kilvTTR~~~v-~~~~~---~~~~~~~l~~L~~~ea~~L~~~~~~~ 172 (287)
T PF00931_consen 126 ---FSSGSKILVTTRDRSV-AGSLG---GTDKVIELEPLSEEEALELFKKRAGR 172 (287)
T ss_dssp ---HHSS-EEEEEESCGGG-GTTHH---SCEEEEECSS--HHHHHHHHHHHHTS
T ss_pred ---cccccccccccccccc-ccccc---cccccccccccccccccccccccccc
Confidence 1112345667754322 11111 11578999999999999999988654
No 252
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.01 E-value=3.8e-05 Score=91.34 Aligned_cols=55 Identities=16% Similarity=0.250 Sum_probs=41.9
Q ss_pred ceeeecCCCccccccccChhHHHHHHHhh------cccccccCCCCCcHHHHHHHHHHhcC
Q 037859 197 WSHVFFEHPATFDTLAMETKKKEEIKKDL------KKGYLLYGPPGTGKSTMIAAMANFLN 251 (504)
Q Consensus 197 w~~~~~~~p~~f~~~~~~~~~k~~i~~~l------~rg~LL~GPpGtGKTsla~aiA~~l~ 251 (504)
|..+....+..++.+++-+...+++...+ .+-+-++||+|+||||||+++++.+.
T Consensus 172 ~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~ 232 (1153)
T PLN03210 172 LGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLS 232 (1153)
T ss_pred HHhhccccCcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHh
Confidence 33344455667888888887777777666 34578999999999999999988764
No 253
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.00 E-value=3.2e-05 Score=81.65 Aligned_cols=61 Identities=34% Similarity=0.535 Sum_probs=49.3
Q ss_pred ccceeeecCCCccccccccChhHHHHHHHhh-----------cccccccCCCCCcHHHHHHHHHHhcCCcEEEE
Q 037859 195 TKWSHVFFEHPATFDTLAMETKKKEEIKKDL-----------KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDL 257 (504)
Q Consensus 195 ~~w~~~~~~~p~~f~~~~~~~~~k~~i~~~l-----------~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l 257 (504)
..|. .-..|++.+.|+.......+|..++ .|-+||+||+|||||+.++.||.++|+.+..-
T Consensus 70 elW~--eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew 141 (634)
T KOG1970|consen 70 ELWV--EKYKPRTLEELAVHKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEW 141 (634)
T ss_pred chhH--HhcCcccHHHHhhhHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhhCceeeee
Confidence 3463 3346899999999988777777776 34478899999999999999999999887653
No 254
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.95 E-value=0.00013 Score=79.15 Aligned_cols=130 Identities=18% Similarity=0.271 Sum_probs=80.5
Q ss_pred cccccCCCCCcHHHHHHHHHHhcC----------CcEEEEeccccCChHH----------------------HHHHHH--
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFLN----------YDVYDLELTTVQDNSE----------------------LRSLLI-- 273 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l~----------~~i~~l~~~~~~~~~~----------------------l~~l~~-- 273 (504)
.+.+.|-||||||.++..+-..|. ++++.+|...+....+ |...|.
T Consensus 424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~ 503 (767)
T KOG1514|consen 424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVP 503 (767)
T ss_pred eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccC
Confidence 467889999999999999988663 4455555544432221 233333
Q ss_pred -hccCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccCCCceEEEEe
Q 037859 274 -DTSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERIIVFT 352 (504)
Q Consensus 274 -~~~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~~~~ivI~t 352 (504)
....++||+|||.|.++. + ++.++ -|++|-.. ..+...+||+.
T Consensus 504 k~~~~~~VvLiDElD~Lvt---r-----------------------------~QdVl---Yn~fdWpt-~~~sKLvvi~I 547 (767)
T KOG1514|consen 504 KPKRSTTVVLIDELDILVT---R-----------------------------SQDVL---YNIFDWPT-LKNSKLVVIAI 547 (767)
T ss_pred CCCCCCEEEEeccHHHHhc---c-----------------------------cHHHH---HHHhcCCc-CCCCceEEEEe
Confidence 113579999999999752 1 12244 44444322 33455677777
Q ss_pred cCCCCCCChhhhcC---CCce-eEEEecCCCHHHHHHHHHHhcCcC
Q 037859 353 TNYVDKLDPALIRR---GRMD-KHIEMSYCCFEAFKVLAKNYLDID 394 (504)
Q Consensus 353 TN~~e~Ld~ALlRp---GR~d-~~I~~~~p~~e~~~~i~~~~l~~~ 394 (504)
.|+.+. ++.++-+ -|++ ..|.|...+.++.++|+..-|..-
T Consensus 548 aNTmdl-PEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~ 592 (767)
T KOG1514|consen 548 ANTMDL-PERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGL 592 (767)
T ss_pred cccccC-HHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcch
Confidence 777654 4444321 1443 457788889999999998777543
No 255
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.93 E-value=3.3e-05 Score=79.99 Aligned_cols=62 Identities=27% Similarity=0.401 Sum_probs=41.0
Q ss_pred ccccccCCCCCcHHHHHHHHHHhc----C-CcEEEEecccc----------------------CChHHHHHHHHhccCCe
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANFL----N-YDVYDLELTTV----------------------QDNSELRSLLIDTSSKS 279 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~l----~-~~i~~l~~~~~----------------------~~~~~l~~l~~~~~~~~ 279 (504)
.-++|+||+|+|||+++..||..+ | ..+..+..... .+..++...+.......
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~D 217 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNKH 217 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCCC
Confidence 348899999999999999999764 3 24444443332 12234455555556778
Q ss_pred EEEEecccc
Q 037859 280 ILVIEDIDC 288 (504)
Q Consensus 280 Il~iDeiD~ 288 (504)
+|+||.+-.
T Consensus 218 lVLIDTaG~ 226 (374)
T PRK14722 218 MVLIDTIGM 226 (374)
T ss_pred EEEEcCCCC
Confidence 888887743
No 256
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.93 E-value=3.1e-05 Score=73.25 Aligned_cols=115 Identities=17% Similarity=0.189 Sum_probs=59.8
Q ss_pred ccccCCCCCcHHHHHHHH-HHh---cCCcEEEEeccccC-----C--hH------------------HHHHHHHhccCCe
Q 037859 229 YLLYGPPGTGKSTMIAAM-ANF---LNYDVYDLELTTVQ-----D--NS------------------ELRSLLIDTSSKS 279 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~ai-A~~---l~~~i~~l~~~~~~-----~--~~------------------~l~~l~~~~~~~~ 279 (504)
+|++|.||+|||..|-.. +.. -|.+++. +...+. . .. .-...+...+..+
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence 578999999999987655 322 2666665 544221 0 00 0112222334789
Q ss_pred EEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccCCCceEEEEecCCCCCC
Q 037859 280 ILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERIIVFTTNYVDKL 359 (504)
Q Consensus 280 Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~~~~ivI~tTN~~e~L 359 (504)
||+|||+...++..... .......+ .+|.. ....+.-||++|-++..|
T Consensus 82 liviDEa~~~~~~r~~~-------------------------~~~~~~~~-~~l~~------hRh~g~diiliTQ~~~~i 129 (193)
T PF05707_consen 82 LIVIDEAQNFFPSRSWK-------------------------GKKVPEII-EFLAQ------HRHYGWDIILITQSPSQI 129 (193)
T ss_dssp EEEETTGGGTSB---T--------------------------T----HHH-HGGGG------CCCTT-EEEEEES-GGGB
T ss_pred EEEEECChhhcCCCccc-------------------------cccchHHH-HHHHH------hCcCCcEEEEEeCCHHHH
Confidence 99999999976421110 01112223 33332 223446789999999999
Q ss_pred ChhhhcCCCceeEEEecCC
Q 037859 360 DPALIRRGRMDKHIEMSYC 378 (504)
Q Consensus 360 d~ALlRpGR~d~~I~~~~p 378 (504)
|+.+++ .++.++.+..+
T Consensus 130 d~~ir~--lve~~~~~~k~ 146 (193)
T PF05707_consen 130 DKFIRD--LVEYHYHCRKL 146 (193)
T ss_dssp -HHHHC--CEEEEEEEEE-
T ss_pred hHHHHH--HHheEEEEEee
Confidence 999987 99999987654
No 257
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.90 E-value=6.7e-06 Score=71.12 Aligned_cols=30 Identities=37% Similarity=0.771 Sum_probs=27.0
Q ss_pred ccccCCCCCcHHHHHHHHHHhcCCcEEEEe
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLNYDVYDLE 258 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~~~i~~l~ 258 (504)
|++.||||+||||+|+.+|..+|++++.++
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d 31 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMD 31 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEec
Confidence 678999999999999999999998877664
No 258
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=97.88 E-value=5.1e-05 Score=85.99 Aligned_cols=125 Identities=23% Similarity=0.295 Sum_probs=86.0
Q ss_pred cccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccCChHHHHHHHHhc--------------------cCCeEEEEeccc
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQDNSELRSLLIDT--------------------SSKSILVIEDID 287 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~~l~~l~~~~--------------------~~~~Il~iDeiD 287 (504)
.+|++||||.|||+.+.++|..+|+.++..|.+...+...+...+..+ ....||++||+|
T Consensus 359 ~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD 438 (871)
T KOG1968|consen 359 ALLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVD 438 (871)
T ss_pred HHHhcCCCCCCchhhHhhhhhhcccceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccc
Confidence 368999999999999999999999999999998876665555544432 113499999999
Q ss_pred ccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccCCCceEEEEecCCCCCCChhhhcCC
Q 037859 288 CSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRG 367 (504)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~~~~ivI~tTN~~e~Ld~ALlRpG 367 (504)
.++. +.| ..-.-++++.+. ..+-+|+|+|.........+.
T Consensus 439 ~~~~--~dR---------------------------g~v~~l~~l~~k---------s~~Piv~~cndr~~p~sr~~~-- 478 (871)
T KOG1968|consen 439 GMFG--EDR---------------------------GGVSKLSSLCKK---------SSRPLVCTCNDRNLPKSRALS-- 478 (871)
T ss_pred cccc--hhh---------------------------hhHHHHHHHHHh---------ccCCeEEEecCCCCccccchh--
Confidence 8642 111 111223344331 225689999987766553333
Q ss_pred CceeEEEecCCCHHHHHHHHHHhcC
Q 037859 368 RMDKHIEMSYCCFEAFKVLAKNYLD 392 (504)
Q Consensus 368 R~d~~I~~~~p~~e~~~~i~~~~l~ 392 (504)
|-+.-|+|+.|+.+.+..-+..++.
T Consensus 479 ~~~~~l~f~kP~~~~i~~ri~si~~ 503 (871)
T KOG1968|consen 479 RACSDLRFSKPSSELIRSRIMSICK 503 (871)
T ss_pred hhcceeeecCCcHHHHHhhhhhhhc
Confidence 3336689999999887776666654
No 259
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=97.88 E-value=8.4e-05 Score=80.23 Aligned_cols=77 Identities=27% Similarity=0.399 Sum_probs=50.4
Q ss_pred cChhHHHHHHHhh---------c-------ccccccCCCCCcHHHHHHHHHHhcCCcEEEEeccc--------cCChHHH
Q 037859 213 METKKKEEIKKDL---------K-------KGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTT--------VQDNSEL 268 (504)
Q Consensus 213 ~~~~~k~~i~~~l---------~-------rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~--------~~~~~~l 268 (504)
..++.|+.++-.| + -.+||+|.||||||-+.+.+++-+-..+|.---.+ +.-+.+-
T Consensus 433 e~edvKkglLLqLfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVtrd~dt 512 (804)
T KOG0478|consen 433 ELEDVKKGLLLQLFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVTKDPDT 512 (804)
T ss_pred cccchhhhHHHHHhcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEEecCcc
Confidence 4456677766666 2 23899999999999999999998866666421100 1111222
Q ss_pred HHHHHhc-----cCCeEEEEeccccc
Q 037859 269 RSLLIDT-----SSKSILVIEDIDCS 289 (504)
Q Consensus 269 ~~l~~~~-----~~~~Il~iDeiD~~ 289 (504)
++++.+. +...|-.|||+|.+
T Consensus 513 kqlVLesGALVLSD~GiCCIDEFDKM 538 (804)
T KOG0478|consen 513 RQLVLESGALVLSDNGICCIDEFDKM 538 (804)
T ss_pred ceeeeecCcEEEcCCceEEchhhhhh
Confidence 3333332 46789999999996
No 260
>PHA02774 E1; Provisional
Probab=97.87 E-value=5.8e-05 Score=81.23 Aligned_cols=53 Identities=26% Similarity=0.457 Sum_probs=38.3
Q ss_pred ccccccCCCCCcHHHHHHHHHHhcCCcEE-EEeccccCChHHHHHHHHhccCCeEEEEecc
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANFLNYDVY-DLELTTVQDNSELRSLLIDTSSKSILVIEDI 286 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~l~~~i~-~l~~~~~~~~~~l~~l~~~~~~~~Il~iDei 286 (504)
+.++||||||||||+++.+|++.++-.++ .++..+ .- .+......-|++|||+
T Consensus 435 nciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~~s---~F----wLqpl~d~ki~vlDD~ 488 (613)
T PHA02774 435 NCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSKS---HF----WLQPLADAKIALLDDA 488 (613)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEECcc---cc----ccchhccCCEEEEecC
Confidence 56899999999999999999999975543 355321 11 1333345569999998
No 261
>PRK07261 topology modulation protein; Provisional
Probab=97.85 E-value=2.5e-05 Score=72.42 Aligned_cols=30 Identities=30% Similarity=0.504 Sum_probs=26.8
Q ss_pred ccccCCCCCcHHHHHHHHHHhcCCcEEEEe
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLNYDVYDLE 258 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~~~i~~l~ 258 (504)
+++.|+||+||||+++.|+..++.+.+.+|
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~~~~~i~~D 32 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHYNCPVLHLD 32 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeEecC
Confidence 688999999999999999999988877654
No 262
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.84 E-value=5.9e-05 Score=67.89 Aligned_cols=31 Identities=29% Similarity=0.566 Sum_probs=25.0
Q ss_pred ccccCCCCCcHHHHHHHHHHhc---CCcEEEEec
Q 037859 229 YLLYGPPGTGKSTMIAAMANFL---NYDVYDLEL 259 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~ 259 (504)
++++||||+|||+++..++..+ +.++..++.
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~ 35 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDI 35 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEEC
Confidence 5789999999999999998877 455555544
No 263
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=97.83 E-value=0.00012 Score=77.86 Aligned_cols=63 Identities=22% Similarity=0.265 Sum_probs=47.6
Q ss_pred cccccccCCCCCcHHHHHHHHHHhc---CCcEEEEeccccCChHHHHHHH-Hh-----------------ccCCeEEEEe
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFL---NYDVYDLELTTVQDNSELRSLL-ID-----------------TSSKSILVIE 284 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~~~~~~l~~l~-~~-----------------~~~~~Il~iD 284 (504)
...++++|.+||||+++++++-... +.+++.++|..+.. ..+...+ .. ...+++||||
T Consensus 162 ~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~-~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ld 240 (441)
T PRK10365 162 EATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNE-SLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 (441)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCH-HHHHHHhcCCCCCCcCCCCcCCCCceeECCCCEEEEe
Confidence 4569999999999999999997654 57899999998753 3343332 21 1246789999
Q ss_pred ccccc
Q 037859 285 DIDCS 289 (504)
Q Consensus 285 eiD~~ 289 (504)
|||.+
T Consensus 241 ei~~l 245 (441)
T PRK10365 241 EIGDI 245 (441)
T ss_pred ccccC
Confidence 99986
No 264
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.83 E-value=0.00022 Score=74.32 Aligned_cols=150 Identities=16% Similarity=0.183 Sum_probs=96.6
Q ss_pred cccccChhHHHHHHHhh--------cccccccCCCCCcHHHHHHHHHHhc-----CCcEEEEeccccCChHHH-------
Q 037859 209 DTLAMETKKKEEIKKDL--------KKGYLLYGPPGTGKSTMIAAMANFL-----NYDVYDLELTTVQDNSEL------- 268 (504)
Q Consensus 209 ~~~~~~~~~k~~i~~~l--------~rg~LL~GPpGtGKTsla~aiA~~l-----~~~i~~l~~~~~~~~~~l------- 268 (504)
.++.+.+..+..+-+++ ...+.+.|-||||||.+..-+-..+ ....++++|.++.....+
T Consensus 150 ~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~ 229 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSS 229 (529)
T ss_pred CCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHHH
Confidence 45566666666666666 5568899999999999888665444 235688899876433221
Q ss_pred --------------HHHHHh----ccCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHH
Q 037859 269 --------------RSLLID----TSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLS 330 (504)
Q Consensus 269 --------------~~l~~~----~~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls 330 (504)
...|.. ...+-++++||+|.++ .++ +
T Consensus 230 ~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~----tr~----------------------------~---- 273 (529)
T KOG2227|consen 230 LLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLI----TRS----------------------------Q---- 273 (529)
T ss_pred HHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHh----hcc----------------------------c----
Confidence 122221 1246799999999974 111 1
Q ss_pred HHhhhhcCccccCCCceEEEEecCCCCCCChhhhc----CCCceeEEEecCCCHHHHHHHHHHhcCcC
Q 037859 331 GLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIR----RGRMDKHIEMSYCCFEAFKVLAKNYLDID 394 (504)
Q Consensus 331 ~lL~~lDg~~~~~~~~~ivI~tTN~~e~Ld~ALlR----pGR~d~~I~~~~p~~e~~~~i~~~~l~~~ 394 (504)
+.|-.++.+....+..+|+|+..|..+.=|..|.| -+--...+.|++.+.++..+|++.-+...
T Consensus 274 ~vLy~lFewp~lp~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~ 341 (529)
T KOG2227|consen 274 TVLYTLFEWPKLPNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEE 341 (529)
T ss_pred ceeeeehhcccCCcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcc
Confidence 11222333333344568899999988876666553 22234568899999999999998877543
No 265
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=97.77 E-value=0.00023 Score=75.32 Aligned_cols=147 Identities=16% Similarity=0.201 Sum_probs=91.5
Q ss_pred ccccccChhHHHHHHHhh------cccccccCCCCCcHHHHHHHHHHhc---CCcEEEEeccccCChHHHHHHHHh----
Q 037859 208 FDTLAMETKKKEEIKKDL------KKGYLLYGPPGTGKSTMIAAMANFL---NYDVYDLELTTVQDNSELRSLLID---- 274 (504)
Q Consensus 208 f~~~~~~~~~k~~i~~~l------~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~~~~~~l~~l~~~---- 274 (504)
+..+++.....+++...+ .-.+|++|++||||-.+|++|-..- +.|++.+||..+-.+--=..+|..
T Consensus 140 ~~~liG~S~am~~l~~~i~kvA~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ESELFGhekGA 219 (464)
T COG2204 140 GGELVGESPAMQQLRRLIAKVAPSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLESELFGHEKGA 219 (464)
T ss_pred cCCceecCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHHHHHhhcccccC
Confidence 344566666666666665 5669999999999999999997665 459999999998533211224432
Q ss_pred -------------ccCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCc-c
Q 037859 275 -------------TSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGL-W 340 (504)
Q Consensus 275 -------------~~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~-~ 340 (504)
......||||||..+ +......||..|..- .
T Consensus 220 FTGA~~~r~G~fE~A~GGTLfLDEI~~m-----------------------------------pl~~Q~kLLRvLqe~~~ 264 (464)
T COG2204 220 FTGAITRRIGRFEQANGGTLFLDEIGEM-----------------------------------PLELQVKLLRVLQEREF 264 (464)
T ss_pred cCCcccccCcceeEcCCceEEeeccccC-----------------------------------CHHHHHHHHHHHHcCee
Confidence 135679999999775 223555666665411 1
Q ss_pred c------cCCCceEEEEecCCC-------CCCChhhhcCCCceeEEEecCCC----HHHHHHHHHHhcC
Q 037859 341 S------ASGEERIIVFTTNYV-------DKLDPALIRRGRMDKHIEMSYCC----FEAFKVLAKNYLD 392 (504)
Q Consensus 341 ~------~~~~~~ivI~tTN~~-------e~Ld~ALlRpGR~d~~I~~~~p~----~e~~~~i~~~~l~ 392 (504)
. .-.-++-||+|||.. ..+-+.|.- |+ -.+.+..|. .+..--|+++|+.
T Consensus 265 ~rvG~~~~i~vdvRiIaaT~~dL~~~v~~G~FReDLyy--RL-nV~~i~iPpLRER~EDIp~L~~hfl~ 330 (464)
T COG2204 265 ERVGGNKPIKVDVRIIAATNRDLEEEVAAGRFREDLYY--RL-NVVPLRLPPLRERKEDIPLLAEHFLK 330 (464)
T ss_pred EecCCCcccceeeEEEeecCcCHHHHHHcCCcHHHHHh--hh-ccceecCCcccccchhHHHHHHHHHH
Confidence 0 111235689999853 233344555 55 245555553 4555567777763
No 266
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.75 E-value=2.1e-05 Score=84.50 Aligned_cols=57 Identities=23% Similarity=0.379 Sum_probs=47.0
Q ss_pred CCCccccccccChhHHHHHHHhh----------cccccccCCCCCcHHHHHHHHHHhc-CCcEEEEec
Q 037859 203 EHPATFDTLAMETKKKEEIKKDL----------KKGYLLYGPPGTGKSTMIAAMANFL-NYDVYDLEL 259 (504)
Q Consensus 203 ~~p~~f~~~~~~~~~k~~i~~~l----------~rg~LL~GPpGtGKTsla~aiA~~l-~~~i~~l~~ 259 (504)
.+...|+++.+.++.+++|++.+ ++-++|.||||+|||+|+++||+.+ .+++|.+..
T Consensus 70 ~ry~fF~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 70 KRYPAFEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred ccccchhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 34445888889999999999988 4447899999999999999999987 467887754
No 267
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.74 E-value=0.00019 Score=68.05 Aligned_cols=49 Identities=33% Similarity=0.535 Sum_probs=33.7
Q ss_pred cChhHHHHHHHhh---cccccccCCCCCcHHHHHHHHHHhc---CCcEEEEeccc
Q 037859 213 METKKKEEIKKDL---KKGYLLYGPPGTGKSTMIAAMANFL---NYDVYDLELTT 261 (504)
Q Consensus 213 ~~~~~k~~i~~~l---~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~ 261 (504)
+.+++++.+...+ .+-.++.||||||||+++++++..+ +..++.+..+.
T Consensus 2 L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~ 56 (196)
T PF13604_consen 2 LNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTN 56 (196)
T ss_dssp S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSH
T ss_pred CCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcH
Confidence 4566777776665 2347788999999999999987655 56677665543
No 268
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=97.69 E-value=0.00014 Score=71.61 Aligned_cols=48 Identities=23% Similarity=0.194 Sum_probs=36.4
Q ss_pred eEEEEecCC------------CCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCcCCcc
Q 037859 347 RIIVFTTNY------------VDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDIDSHE 397 (504)
Q Consensus 347 ~ivI~tTN~------------~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~~~~~ 397 (504)
-++|++||+ |..+|-.|+. |+ ..|...+.+.++.+.|++.-...++..
T Consensus 318 PiiimaTNrgit~iRGTn~~SphGiP~D~lD--R~-lII~t~py~~~d~~~IL~iRc~EEdv~ 377 (454)
T KOG2680|consen 318 PIIIMATNRGITRIRGTNYRSPHGIPIDLLD--RM-LIISTQPYTEEDIKKILRIRCQEEDVE 377 (454)
T ss_pred cEEEEEcCCceEEeecCCCCCCCCCcHHHhh--hh-heeecccCcHHHHHHHHHhhhhhhccc
Confidence 378888874 5678999999 98 678877778888888888776554433
No 269
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=97.67 E-value=0.00019 Score=82.92 Aligned_cols=144 Identities=18% Similarity=0.221 Sum_probs=91.8
Q ss_pred HHHHHhh---cccccccCCCCCcHHHH-HHHHHHhcCCcEEEEeccccCChHHHHHHHHhc-------------c----C
Q 037859 219 EEIKKDL---KKGYLLYGPPGTGKSTM-IAAMANFLNYDVYDLELTTVQDNSELRSLLIDT-------------S----S 277 (504)
Q Consensus 219 ~~i~~~l---~rg~LL~GPpGtGKTsl-a~aiA~~l~~~i~~l~~~~~~~~~~l~~l~~~~-------------~----~ 277 (504)
+.+..+. .|||+++||||+|||++ .-++-+++-+++..++.+.-+..+.....+... | .
T Consensus 1484 ~~f~n~~lnt~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~T~s~ls~Ler~t~yy~~tg~~~l~PK~~vK 1563 (3164)
T COG5245 1484 DSFSNEALNTLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTMTPSKLSVLERETEYYPNTGVVRLYPKPVVK 1563 (3164)
T ss_pred HHHHHHHHhccceEEEECCCCCccchhcchhhhhhhheeeeEEeeccccCCHHHHHHHHhhceeeccCCeEEEccCcchh
Confidence 3444444 89999999999999994 668888899999999988776555444444332 1 2
Q ss_pred CeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccC------CCceEEEE
Q 037859 278 KSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSAS------GEERIIVF 351 (504)
Q Consensus 278 ~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~------~~~~ivI~ 351 (504)
.-|+|.|||.. + ... .-.....-..+..|+ .-.|+|+.. -.++++.+
T Consensus 1564 ~lVLFcDeInL--p---~~~---------------------~y~~~~vI~FlR~l~-e~QGfw~s~~~~wvTI~~i~l~G 1616 (3164)
T COG5245 1564 DLVLFCDEINL--P---YGF---------------------EYYPPTVIVFLRPLV-ERQGFWSSIAVSWVTICGIILYG 1616 (3164)
T ss_pred heEEEeeccCC--c---ccc---------------------ccCCCceEEeeHHHH-HhcccccchhhhHhhhcceEEEc
Confidence 35899999983 1 100 000010111111222 224566432 13478889
Q ss_pred ecCCCCC-----CChhhhcCCCceeEEEecCCCHHHHHHHHHHhcC
Q 037859 352 TTNYVDK-----LDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLD 392 (504)
Q Consensus 352 tTN~~e~-----Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~ 392 (504)
++|.+.. .+..++| |- ..|.+.||......+|.+.++.
T Consensus 1617 acnp~td~gRv~~~eRf~r--~~-v~vf~~ype~~SL~~Iyea~l~ 1659 (3164)
T COG5245 1617 ACNPGTDEGRVKYYERFIR--KP-VFVFCCYPELASLRNIYEAVLM 1659 (3164)
T ss_pred cCCCCCCcccCccHHHHhc--Cc-eEEEecCcchhhHHHHHHHHHH
Confidence 9998754 2356666 43 6788999999988888887763
No 270
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.66 E-value=3e-05 Score=71.33 Aligned_cols=33 Identities=36% Similarity=0.472 Sum_probs=29.6
Q ss_pred cccccccCCCCCcHHHHHHHHHHhcCCcEEEEe
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLE 258 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~ 258 (504)
+..++|+||||||||++++++|..++.++++.+
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d 36 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTD 36 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 457899999999999999999999999888654
No 271
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=97.66 E-value=5.5e-05 Score=83.35 Aligned_cols=78 Identities=23% Similarity=0.387 Sum_probs=50.5
Q ss_pred cccChhHHHHHHHhh--------c-----cc---ccccCCCCCcHHHHHHHHHHhcCCcEEEEec-cc---c-----CCh
Q 037859 211 LAMETKKKEEIKKDL--------K-----KG---YLLYGPPGTGKSTMIAAMANFLNYDVYDLEL-TT---V-----QDN 265 (504)
Q Consensus 211 ~~~~~~~k~~i~~~l--------~-----rg---~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~-~~---~-----~~~ 265 (504)
+-+.+.+|+.|+-.+ + || +||.|-||||||.|.+.+++.+-..+|.--- ++ + .+.
T Consensus 288 IyG~e~VKkAilLqLfgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~~GLTAav~rd~ 367 (682)
T COG1241 288 IYGHEDVKKAILLQLFGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAAGLTAAVVRDK 367 (682)
T ss_pred ccCcHHHHHHHHHHhcCCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEccccccccCceeEEEEcc
Confidence 446666777777666 2 33 8999999999999999999988777664211 11 1 110
Q ss_pred HHHHHHHHhc-----cCCeEEEEeccccc
Q 037859 266 SELRSLLIDT-----SSKSILVIEDIDCS 289 (504)
Q Consensus 266 ~~l~~l~~~~-----~~~~Il~iDeiD~~ 289 (504)
. .-....++ ..+.|..|||+|.+
T Consensus 368 ~-tge~~LeaGALVlAD~Gv~cIDEfdKm 395 (682)
T COG1241 368 V-TGEWVLEAGALVLADGGVCCIDEFDKM 395 (682)
T ss_pred C-CCeEEEeCCEEEEecCCEEEEEeccCC
Confidence 0 00111111 47899999999975
No 272
>PRK08118 topology modulation protein; Reviewed
Probab=97.66 E-value=6.1e-05 Score=69.60 Aligned_cols=33 Identities=33% Similarity=0.472 Sum_probs=29.9
Q ss_pred cccccCCCCCcHHHHHHHHHHhcCCcEEEEecc
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFLNYDVYDLELT 260 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~ 260 (504)
.++++||||+||||+|+.|++.++.+++.++.-
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l 35 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDAL 35 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchh
Confidence 478999999999999999999999999888743
No 273
>PRK13947 shikimate kinase; Provisional
Probab=97.52 E-value=6.5e-05 Score=69.19 Aligned_cols=32 Identities=31% Similarity=0.418 Sum_probs=29.3
Q ss_pred cccccCCCCCcHHHHHHHHHHhcCCcEEEEec
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFLNYDVYDLEL 259 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~ 259 (504)
.++|.|+||||||++++.+|..+++++++.+.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~ 34 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDK 34 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECch
Confidence 47899999999999999999999999988764
No 274
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.51 E-value=0.00028 Score=67.24 Aligned_cols=33 Identities=27% Similarity=0.493 Sum_probs=27.3
Q ss_pred ccccCCCCCcHHHHHHHHHHhc---CCcEEEEeccc
Q 037859 229 YLLYGPPGTGKSTMIAAMANFL---NYDVYDLELTT 261 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~ 261 (504)
++++||||||||+++..+|... +..+++++...
T Consensus 15 ~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 15 TQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 7899999999999999887543 66788887764
No 275
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=97.51 E-value=0.00035 Score=73.37 Aligned_cols=84 Identities=17% Similarity=0.294 Sum_probs=62.2
Q ss_pred ccccccccChhHHHHHHHhh------cccccccCCCCCcHHHHHHHHHHhc---CCcEEEEeccccCCh---HHH----H
Q 037859 206 ATFDTLAMETKKKEEIKKDL------KKGYLLYGPPGTGKSTMIAAMANFL---NYDVYDLELTTVQDN---SEL----R 269 (504)
Q Consensus 206 ~~f~~~~~~~~~k~~i~~~l------~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~~~~---~~l----~ 269 (504)
..+..+++......++++.+ .-.+||.|.+||||..+|+||=... +.|++.+||..+-.+ ++| +
T Consensus 220 ~~~~~iIG~S~am~~ll~~i~~VA~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesLlESELFGHeK 299 (550)
T COG3604 220 LEVGGIIGRSPAMRQLLKEIEVVAKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESLLESELFGHEK 299 (550)
T ss_pred cccccceecCHHHHHHHHHHHHHhcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchHHHHHHHhcccc
Confidence 34677888888888888877 5569999999999999999997655 678999999988422 222 1
Q ss_pred HHHHhc----------cCCeEEEEeccccc
Q 037859 270 SLLIDT----------SSKSILVIEDIDCS 289 (504)
Q Consensus 270 ~l~~~~----------~~~~Il~iDeiD~~ 289 (504)
..|..+ ....-||+|||-.+
T Consensus 300 GAFTGA~~~r~GrFElAdGGTLFLDEIGel 329 (550)
T COG3604 300 GAFTGAINTRRGRFELADGGTLFLDEIGEL 329 (550)
T ss_pred cccccchhccCcceeecCCCeEechhhccC
Confidence 122221 35678999999654
No 276
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.50 E-value=4.2e-05 Score=68.01 Aligned_cols=27 Identities=44% Similarity=0.689 Sum_probs=23.5
Q ss_pred ccccCCCCCcHHHHHHHHHHhcCCcEE
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLNYDVY 255 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~~~i~ 255 (504)
++++||||+|||++|+.++..++..++
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~~~i 28 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGAVVI 28 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEE
Confidence 578999999999999999999984443
No 277
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.50 E-value=7.1e-05 Score=67.43 Aligned_cols=30 Identities=33% Similarity=0.449 Sum_probs=27.7
Q ss_pred ccccCCCCCcHHHHHHHHHHhcCCcEEEEe
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLNYDVYDLE 258 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~~~i~~l~ 258 (504)
++|+||||+|||++++.+|..+++++++.+
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 689999999999999999999999988764
No 278
>PRK00625 shikimate kinase; Provisional
Probab=97.49 E-value=7e-05 Score=69.57 Aligned_cols=31 Identities=32% Similarity=0.592 Sum_probs=28.8
Q ss_pred cccccCCCCCcHHHHHHHHHHhcCCcEEEEe
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFLNYDVYDLE 258 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~ 258 (504)
.++|.|+||+|||++++.+|..++++++++|
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 3789999999999999999999999999876
No 279
>PRK03839 putative kinase; Provisional
Probab=97.49 E-value=6.8e-05 Score=69.86 Aligned_cols=30 Identities=37% Similarity=0.623 Sum_probs=27.3
Q ss_pred ccccCCCCCcHHHHHHHHHHhcCCcEEEEe
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLNYDVYDLE 258 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~~~i~~l~ 258 (504)
++|.|+||+||||+++.+|+.+++++++++
T Consensus 3 I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 3 IAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 788999999999999999999999887653
No 280
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.49 E-value=7.2e-05 Score=72.01 Aligned_cols=23 Identities=43% Similarity=0.853 Sum_probs=20.4
Q ss_pred cccccccCCCCCcHHHHHHHHHH
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMAN 248 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~ 248 (504)
+.-+|+||+||+|||++|+.+++
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~ 34 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPG 34 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCC
Confidence 44599999999999999999975
No 281
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.46 E-value=8.7e-05 Score=71.10 Aligned_cols=38 Identities=39% Similarity=0.743 Sum_probs=27.8
Q ss_pred cChhHHHHHHHhhc-cc-ccccCCCCCcHHHHHHHHHHhc
Q 037859 213 METKKKEEIKKDLK-KG-YLLYGPPGTGKSTMIAAMANFL 250 (504)
Q Consensus 213 ~~~~~k~~i~~~l~-rg-~LL~GPpGtGKTsla~aiA~~l 250 (504)
+++.+++.|...+. .+ .++.||||||||+++.+++..+
T Consensus 2 ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 2 LNESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp --HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHh
Confidence 46778888887774 44 7889999999998877776665
No 282
>PRK13949 shikimate kinase; Provisional
Probab=97.45 E-value=7.9e-05 Score=68.98 Aligned_cols=32 Identities=34% Similarity=0.444 Sum_probs=29.2
Q ss_pred ccccccCCCCCcHHHHHHHHHHhcCCcEEEEe
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANFLNYDVYDLE 258 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~ 258 (504)
+.++|+||||+|||++++.+|+.+++++++++
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 35889999999999999999999999988876
No 283
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.43 E-value=7.8e-05 Score=68.54 Aligned_cols=33 Identities=36% Similarity=0.405 Sum_probs=30.2
Q ss_pred ccccccCCCCCcHHHHHHHHHHhcCCcEEEEec
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANFLNYDVYDLEL 259 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~ 259 (504)
+.+.|.|++|+||||+.+++|+.|++++++.|-
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~ 35 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQ 35 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccchH
Confidence 458899999999999999999999999998764
No 284
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.41 E-value=0.00063 Score=61.53 Aligned_cols=23 Identities=35% Similarity=0.661 Sum_probs=20.9
Q ss_pred cccccCCCCCcHHHHHHHHHHhc
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFL 250 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l 250 (504)
-+.+.||||+|||+++.-+|..|
T Consensus 7 ki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 7 KIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred EEEEeCCCCccHHHHHHHHHHHH
Confidence 47889999999999999999876
No 285
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.38 E-value=0.00038 Score=68.82 Aligned_cols=80 Identities=21% Similarity=0.288 Sum_probs=50.3
Q ss_pred ccccChhHHHHHHHhh---------ccc--ccccCCCCCcHHHHHHHHHHhcCCcEEE----------EeccccCC----
Q 037859 210 TLAMETKKKEEIKKDL---------KKG--YLLYGPPGTGKSTMIAAMANFLNYDVYD----------LELTTVQD---- 264 (504)
Q Consensus 210 ~~~~~~~~k~~i~~~l---------~rg--~LL~GPpGtGKTsla~aiA~~l~~~i~~----------l~~~~~~~---- 264 (504)
.+.++.-.++.|+..+ ++. +-|||+|||||+..++.||+.+-..... .++..-..
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~~ie~Y 162 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHASKIEDY 162 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChHHHHHH
Confidence 4567777777777777 344 3479999999999999999987322111 11111111
Q ss_pred hHHHHHHHHhc---cCCeEEEEeccccc
Q 037859 265 NSELRSLLIDT---SSKSILVIEDIDCS 289 (504)
Q Consensus 265 ~~~l~~l~~~~---~~~~Il~iDeiD~~ 289 (504)
..+|++-+... -.++|+++||+|.+
T Consensus 163 k~eL~~~v~~~v~~C~rslFIFDE~DKm 190 (344)
T KOG2170|consen 163 KEELKNRVRGTVQACQRSLFIFDEVDKL 190 (344)
T ss_pred HHHHHHHHHHHHHhcCCceEEechhhhc
Confidence 12333333222 37899999999986
No 286
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.36 E-value=0.00028 Score=66.94 Aligned_cols=106 Identities=25% Similarity=0.278 Sum_probs=61.5
Q ss_pred cccccCCCCCcHHHHHHHHHHhcCCcEEEEec-cccCChHHHHHHHHhccCCeEEEEecccccccccccccccccccccc
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFLNYDVYDLEL-TTVQDNSELRSLLIDTSSKSILVIEDIDCSLDLTGQREKKKEKDEDK 306 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~-~~~~~~~~l~~l~~~~~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~ 306 (504)
-++|.|+.|+|||++++.|+.. |.-+. ....+.+.+. .....-|+.|||++.+- +.
T Consensus 54 ~lvl~G~QG~GKStf~~~L~~~-----~~~d~~~~~~~kd~~~----~l~~~~iveldEl~~~~----k~---------- 110 (198)
T PF05272_consen 54 VLVLVGKQGIGKSTFFRKLGPE-----YFSDSINDFDDKDFLE----QLQGKWIVELDELDGLS----KK---------- 110 (198)
T ss_pred eeeEecCCcccHHHHHHHHhHH-----hccCccccCCCcHHHH----HHHHhHheeHHHHhhcc----hh----------
Confidence 3678999999999999999766 22222 2222222222 23456789999999841 10
Q ss_pred cccCcccccccccCCCcchhhHHHHHhhh-hcCccc-------cCCCceEEEEecCCCCCC-ChhhhcCCCceeEEEecC
Q 037859 307 EEKNPIEKKEKEDGGSKKSKVTLSGLLNF-IDGLWS-------ASGEERIIVFTTNYVDKL-DPALIRRGRMDKHIEMSY 377 (504)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~ls~lL~~-lDg~~~-------~~~~~~ivI~tTN~~e~L-d~ALlRpGR~d~~I~~~~ 377 (504)
....+..++.. .|-+.. ......++|+|||..+-| |+.=-| || ..|+++.
T Consensus 111 ------------------~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnR--Rf-~~v~v~~ 169 (198)
T PF05272_consen 111 ------------------DVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNR--RF-WPVEVSK 169 (198)
T ss_pred ------------------hHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCe--EE-EEEEEcC
Confidence 11123333321 111110 111224789999998855 666678 88 6777765
No 287
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.35 E-value=0.001 Score=69.43 Aligned_cols=63 Identities=13% Similarity=0.188 Sum_probs=38.4
Q ss_pred cccccccCCCCCcHHHHHHHHHHhc-CCcEEEEeccccCChHHHHHHHHhccCCeEEEEeccccc
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFL-NYDVYDLELTTVQDNSELRSLLIDTSSKSILVIEDIDCS 289 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l-~~~i~~l~~~~~~~~~~l~~l~~~~~~~~Il~iDeiD~~ 289 (504)
..++++.||||||||+++.+++.+. -..........+-.+- -.+.+......-+|+|||+-.+
T Consensus 209 ~~Nli~lGp~GTGKThla~~l~~~~a~~sG~f~T~a~Lf~~L-~~~~lg~v~~~DlLI~DEvgyl 272 (449)
T TIGR02688 209 NYNLIELGPKGTGKSYIYNNLSPYVILISGGTITVAKLFYNI-STRQIGLVGRWDVVAFDEVATL 272 (449)
T ss_pred CCcEEEECCCCCCHHHHHHHHhHHHHHHcCCcCcHHHHHHHH-HHHHHhhhccCCEEEEEcCCCC
Confidence 5679999999999999999988762 1010111111111000 0133344457789999999763
No 288
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=97.35 E-value=0.00034 Score=75.12 Aligned_cols=148 Identities=22% Similarity=0.333 Sum_probs=91.0
Q ss_pred ccccccChhHHHHHHHhh-------------ccc---ccccCCCCCcHHHHHHHHHHhcCCcEEEEecc----cc-----
Q 037859 208 FDTLAMETKKKEEIKKDL-------------KKG---YLLYGPPGTGKSTMIAAMANFLNYDVYDLELT----TV----- 262 (504)
Q Consensus 208 f~~~~~~~~~k~~i~~~l-------------~rg---~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~----~~----- 262 (504)
|-.+-+.+.+|.-|+-.+ -|| +++.|.||||||-+.++.++.+-..+|..--. .+
T Consensus 344 ~PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYtsGkaSSaAGLTaaVv 423 (764)
T KOG0480|consen 344 FPSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTSGKASSAAGLTAAVV 423 (764)
T ss_pred CccccchHHHHhhHHHHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEecCcccccccceEEEE
Confidence 445667777777776665 234 89999999999999999999998888854111 11
Q ss_pred CChHHHHHHHHhc-----cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhc
Q 037859 263 QDNSELRSLLIDT-----SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFID 337 (504)
Q Consensus 263 ~~~~~l~~l~~~~-----~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lD 337 (504)
.+. +--....++ ..+.|-.|||+|.+- .+ ..-.++.+|+
T Consensus 424 kD~-esgdf~iEAGALmLADnGICCIDEFDKMd----~~-------------------------------dqvAihEAME 467 (764)
T KOG0480|consen 424 KDE-ESGDFTIEAGALMLADNGICCIDEFDKMD----VK-------------------------------DQVAIHEAME 467 (764)
T ss_pred ecC-CCCceeeecCcEEEccCceEEechhcccC----hH-------------------------------hHHHHHHHHH
Confidence 111 001111112 467899999999861 10 1112333332
Q ss_pred ---------CccccCCCceEEEEecCCCC-------------CCChhhhcCCCceeEE-EecCCCHHHHHHHHHHhcCc
Q 037859 338 ---------GLWSASGEERIIVFTTNYVD-------------KLDPALIRRGRMDKHI-EMSYCCFEAFKVLAKNYLDI 393 (504)
Q Consensus 338 ---------g~~~~~~~~~ivI~tTN~~e-------------~Ld~ALlRpGR~d~~I-~~~~p~~e~~~~i~~~~l~~ 393 (504)
|+...-+..--||+|+|+.. +++++|+. |||... -++.|+...=..|.++.+..
T Consensus 468 QQtISIaKAGv~aTLnARtSIlAAANPv~GhYdR~ktl~eNi~msApimS--RFDL~FiLlD~~nE~~D~~ia~hIld~ 544 (764)
T KOG0480|consen 468 QQTISIAKAGVVATLNARTSILAAANPVGGHYDRKKTLRENINMSAPIMS--RFDLFFILLDDCNEVVDYAIARHILDL 544 (764)
T ss_pred hheehheecceEEeecchhhhhhhcCCcCCccccccchhhhcCCCchhhh--hhcEEEEEecCCchHHHHHHHHHHHHH
Confidence 21110011123677777542 47899999 999654 56889888777777777643
No 289
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=97.35 E-value=0.00027 Score=78.25 Aligned_cols=49 Identities=33% Similarity=0.463 Sum_probs=43.1
Q ss_pred CCccccccccChhHHHHHHHhh--cccccccCCCCCcHHHHHHHHHHhcCC
Q 037859 204 HPATFDTLAMETKKKEEIKKDL--KKGYLLYGPPGTGKSTMIAAMANFLNY 252 (504)
Q Consensus 204 ~p~~f~~~~~~~~~k~~i~~~l--~rg~LL~GPpGtGKTsla~aiA~~l~~ 252 (504)
.|..|+.+.++++.++.+...+ ++.++|+||||||||++++++|..+..
T Consensus 26 ~~~~~~~vigq~~a~~~L~~~~~~~~~~l~~G~~G~GKttla~~l~~~l~~ 76 (637)
T PRK13765 26 PERLIDQVIGQEHAVEVIKKAAKQRRHVMMIGSPGTGKSMLAKAMAELLPK 76 (637)
T ss_pred CcccHHHcCChHHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHcCh
Confidence 3788999999999888877766 678999999999999999999998864
No 290
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.32 E-value=0.00093 Score=64.22 Aligned_cols=21 Identities=29% Similarity=0.498 Sum_probs=19.8
Q ss_pred ccccccCCCCCcHHHHHHHHH
Q 037859 227 KGYLLYGPPGTGKSTMIAAMA 247 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA 247 (504)
|.++|.||.|+|||++.+.++
T Consensus 30 ~~~~itGpNg~GKStlLk~i~ 50 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVA 50 (213)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 679999999999999999998
No 291
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=97.31 E-value=0.0036 Score=60.61 Aligned_cols=125 Identities=12% Similarity=0.081 Sum_probs=91.8
Q ss_pred cccccccCCCC-CcHHHHHHHHHHhcC---------CcEEEEeccc-------cCChHHHHHHHHhc------cCCeEEE
Q 037859 226 KKGYLLYGPPG-TGKSTMIAAMANFLN---------YDVYDLELTT-------VQDNSELRSLLIDT------SSKSILV 282 (504)
Q Consensus 226 ~rg~LL~GPpG-tGKTsla~aiA~~l~---------~~i~~l~~~~-------~~~~~~l~~l~~~~------~~~~Il~ 282 (504)
...|||.|..+ +||.-++.-++..+. -+++.+.... .-+-+++|.+.... +..-|++
T Consensus 15 shAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KViI 94 (263)
T PRK06581 15 YNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYKVAI 94 (263)
T ss_pred hheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcEEEE
Confidence 56799999998 999999888877662 2455554321 12345566554433 2567999
Q ss_pred EecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccCCCceEEEEecCCCCCCChh
Q 037859 283 IEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPA 362 (504)
Q Consensus 283 iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~~~~ivI~tTN~~e~Ld~A 362 (504)
|+++|.+ +....+.||..++.- +...++|++|..++.|.|.
T Consensus 95 I~~ae~m-----------------------------------t~~AANALLKtLEEP----P~~t~fILit~~~~~LLpT 135 (263)
T PRK06581 95 IYSAELM-----------------------------------NLNAANSCLKILEDA----PKNSYIFLITSRAASIIST 135 (263)
T ss_pred EechHHh-----------------------------------CHHHHHHHHHhhcCC----CCCeEEEEEeCChhhCchh
Confidence 9999986 234678899998853 4567888888899999999
Q ss_pred hhcCCCceeEEEecCCCHHHHHHHHHHhcC
Q 037859 363 LIRRGRMDKHIEMSYCCFEAFKVLAKNYLD 392 (504)
Q Consensus 363 LlRpGR~d~~I~~~~p~~e~~~~i~~~~l~ 392 (504)
++. |+ .++.|..|....-.++...++.
T Consensus 136 IrS--RC-q~i~~~~p~~~~~~e~~~~~~~ 162 (263)
T PRK06581 136 IRS--RC-FKINVRSSILHAYNELYSQFIQ 162 (263)
T ss_pred Hhh--ce-EEEeCCCCCHHHHHHHHHHhcc
Confidence 999 88 6899999988777777666553
No 292
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.31 E-value=0.00016 Score=66.05 Aligned_cols=28 Identities=36% Similarity=0.615 Sum_probs=24.3
Q ss_pred ccccCCCCCcHHHHHHHHHHhcCCcEEE
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLNYDVYD 256 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~~~i~~ 256 (504)
++|.||||||||++++.+++.++..+++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~ 28 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIE 28 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEe
Confidence 5789999999999999999999865543
No 293
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.31 E-value=0.00016 Score=65.12 Aligned_cols=28 Identities=36% Similarity=0.455 Sum_probs=24.5
Q ss_pred ccccCCCCCcHHHHHHHHHHhcCCcEEE
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLNYDVYD 256 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~~~i~~ 256 (504)
++|+||||+|||++++.++..++..+++
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~ 29 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFID 29 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEe
Confidence 5789999999999999999998776553
No 294
>PRK06217 hypothetical protein; Validated
Probab=97.30 E-value=0.00017 Score=67.51 Aligned_cols=30 Identities=30% Similarity=0.438 Sum_probs=27.5
Q ss_pred ccccCCCCCcHHHHHHHHHHhcCCcEEEEe
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLNYDVYDLE 258 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~~~i~~l~ 258 (504)
++|.|+||+||||++++||..++++++++|
T Consensus 4 I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 4 IHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 789999999999999999999999887664
No 295
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.30 E-value=0.00036 Score=64.62 Aligned_cols=62 Identities=18% Similarity=0.250 Sum_probs=44.7
Q ss_pred ccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccCChH-----------------------HHHHHHHh-ccCCeEEEEe
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQDNS-----------------------ELRSLLID-TSSKSILVIE 284 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~-----------------------~l~~l~~~-~~~~~Il~iD 284 (504)
+|+.||||+|||++|..+|..++.+++++......+.+ +|..++.. ..++.+++||
T Consensus 4 ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~~~~VlID 83 (170)
T PRK05800 4 ILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAPGRCVLVD 83 (170)
T ss_pred EEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCCCCEEEeh
Confidence 68999999999999999999998888877765543332 23333433 3445688888
Q ss_pred cccccc
Q 037859 285 DIDCSL 290 (504)
Q Consensus 285 eiD~~~ 290 (504)
-+-.++
T Consensus 84 ~Lt~~~ 89 (170)
T PRK05800 84 CLTTWV 89 (170)
T ss_pred hHHHHH
Confidence 877653
No 296
>PF14516 AAA_35: AAA-like domain
Probab=97.29 E-value=0.002 Score=66.21 Aligned_cols=46 Identities=17% Similarity=0.399 Sum_probs=34.0
Q ss_pred HHHHHHHhhcc-c--ccccCCCCCcHHHHHHHHHHhc---CCcEEEEecccc
Q 037859 217 KKEEIKKDLKK-G--YLLYGPPGTGKSTMIAAMANFL---NYDVYDLELTTV 262 (504)
Q Consensus 217 ~k~~i~~~l~r-g--~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~ 262 (504)
.-+.+.+.+.+ | +.++||..+||||+...+...+ |+..+.+++..+
T Consensus 19 ~e~~~~~~i~~~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~ 70 (331)
T PF14516_consen 19 AEQECYQEIVQPGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQL 70 (331)
T ss_pred HHHHHHHHHhcCCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecC
Confidence 44455555522 5 5678999999999999887665 777888888765
No 297
>PRK13948 shikimate kinase; Provisional
Probab=97.28 E-value=0.0002 Score=67.09 Aligned_cols=33 Identities=27% Similarity=0.196 Sum_probs=30.8
Q ss_pred cccccccCCCCCcHHHHHHHHHHhcCCcEEEEe
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLE 258 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~ 258 (504)
++.++|.|++|||||++++.+|..+++++++.|
T Consensus 10 ~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 10 VTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 577999999999999999999999999999876
No 298
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.28 E-value=0.00018 Score=67.03 Aligned_cols=28 Identities=25% Similarity=0.506 Sum_probs=24.7
Q ss_pred ccccCCCCCcHHHHHHHHHHhcCCcEEE
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLNYDVYD 256 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~~~i~~ 256 (504)
++++||||+|||++++.||..+++..+.
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~is 29 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTHLS 29 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEE
Confidence 5789999999999999999999875544
No 299
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.27 E-value=0.00018 Score=64.09 Aligned_cols=30 Identities=33% Similarity=0.471 Sum_probs=27.7
Q ss_pred ccccCCCCCcHHHHHHHHHHhcCCcEEEEe
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLNYDVYDLE 258 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~~~i~~l~ 258 (504)
+.+.|+||||||++++.+|..++++++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 568999999999999999999999988776
No 300
>PRK14532 adenylate kinase; Provisional
Probab=97.26 E-value=0.00019 Score=67.31 Aligned_cols=29 Identities=24% Similarity=0.431 Sum_probs=25.9
Q ss_pred ccccCCCCCcHHHHHHHHHHhcCCcEEEE
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLNYDVYDL 257 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~~~i~~l 257 (504)
++|.||||+|||++++.+|..+|+..++.
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~g~~~is~ 31 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEERGMVQLST 31 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEeC
Confidence 78999999999999999999999776653
No 301
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.26 E-value=0.00017 Score=64.11 Aligned_cols=32 Identities=31% Similarity=0.556 Sum_probs=28.3
Q ss_pred cccccccCCCCCcHHHHHHHHHHhcCCcEEEE
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDL 257 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l 257 (504)
+-.+|+.|-||||||+++..+|..++++.+.+
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~~~~i~i 38 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTGLEYIEI 38 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhCCceEeh
Confidence 34699999999999999999999999887654
No 302
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.26 E-value=0.0016 Score=61.90 Aligned_cols=63 Identities=17% Similarity=0.293 Sum_probs=41.4
Q ss_pred cccccccCCCCCcHHHHHHHHHHh-----cCCcEE-----------EEeccc---cC--------ChHHHHHHHHhcc--
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANF-----LNYDVY-----------DLELTT---VQ--------DNSELRSLLIDTS-- 276 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~-----l~~~i~-----------~l~~~~---~~--------~~~~l~~l~~~~~-- 276 (504)
.+-++|.||.|+|||++.+.|+.. .|.++- ...++. +. ...++..++....
T Consensus 25 g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~~~~~~iL~~~~~~ 104 (199)
T cd03283 25 KNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAELRRLKEIVEKAKKG 104 (199)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHHHHHHHHHHHhccCC
Confidence 456899999999999999999853 344321 001110 00 1134566777777
Q ss_pred CCeEEEEecccc
Q 037859 277 SKSILVIEDIDC 288 (504)
Q Consensus 277 ~~~Il~iDeiD~ 288 (504)
.|.++++||.=.
T Consensus 105 ~p~llllDEp~~ 116 (199)
T cd03283 105 EPVLFLLDEIFK 116 (199)
T ss_pred CCeEEEEecccC
Confidence 899999999744
No 303
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.23 E-value=0.00023 Score=65.94 Aligned_cols=50 Identities=22% Similarity=0.376 Sum_probs=32.2
Q ss_pred cChhHHHHHHHhh-------cccccccCCCCCcHHHHHHHHHHhcCCc---EEEEecccc
Q 037859 213 METKKKEEIKKDL-------KKGYLLYGPPGTGKSTMIAAMANFLNYD---VYDLELTTV 262 (504)
Q Consensus 213 ~~~~~k~~i~~~l-------~rg~LL~GPpGtGKTsla~aiA~~l~~~---i~~l~~~~~ 262 (504)
+.++..+++...+ ++.++++||||+|||++++++...+..+ ++.+++...
T Consensus 4 gR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 4 GREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp T-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 4444555555555 6779999999999999999998777444 666666655
No 304
>PRK13946 shikimate kinase; Provisional
Probab=97.23 E-value=0.0002 Score=67.19 Aligned_cols=34 Identities=32% Similarity=0.431 Sum_probs=30.9
Q ss_pred cccccccCCCCCcHHHHHHHHHHhcCCcEEEEec
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLEL 259 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~ 259 (504)
++.++|.|+||||||++++.+|..+|+++++.|.
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~ 43 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADT 43 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCH
Confidence 4678999999999999999999999999988763
No 305
>PRK14531 adenylate kinase; Provisional
Probab=97.23 E-value=0.00022 Score=66.78 Aligned_cols=30 Identities=30% Similarity=0.507 Sum_probs=26.7
Q ss_pred ccccccCCCCCcHHHHHHHHHHhcCCcEEE
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANFLNYDVYD 256 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~l~~~i~~ 256 (504)
+-++++||||+|||++++.+|..+|++.+.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is 32 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLS 32 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEe
Confidence 458999999999999999999999887654
No 306
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.23 E-value=0.0014 Score=65.12 Aligned_cols=46 Identities=30% Similarity=0.507 Sum_probs=37.4
Q ss_pred ccccccccChhHHHHHHHhh--ccc-ccccCCCCCcHHHHHHHHHHhcC
Q 037859 206 ATFDTLAMETKKKEEIKKDL--KKG-YLLYGPPGTGKSTMIAAMANFLN 251 (504)
Q Consensus 206 ~~f~~~~~~~~~k~~i~~~l--~rg-~LL~GPpGtGKTsla~aiA~~l~ 251 (504)
..++++++.++..+.+...+ ++| +++.||+|+|||++++++..++.
T Consensus 57 ~~l~~lg~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~all~~i~ 105 (264)
T cd01129 57 LDLEKLGLKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSALSELN 105 (264)
T ss_pred CCHHHcCCCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHhhhC
Confidence 45788888888877776665 556 78899999999999999987764
No 307
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=97.22 E-value=0.00025 Score=73.39 Aligned_cols=46 Identities=33% Similarity=0.618 Sum_probs=41.3
Q ss_pred cccccccChhHHHHHHHhhcccccccCCCCCcHHHHHHHHHHhcCCc
Q 037859 207 TFDTLAMETKKKEEIKKDLKKGYLLYGPPGTGKSTMIAAMANFLNYD 253 (504)
Q Consensus 207 ~f~~~~~~~~~k~~i~~~l~rg~LL~GPpGtGKTsla~aiA~~l~~~ 253 (504)
.++++.+++.+++++.+. .+|+|+-||||.|||++|+|+|..+...
T Consensus 245 ~ledY~L~dkl~eRL~er-aeGILIAG~PGaGKsTFaqAlAefy~~~ 290 (604)
T COG1855 245 SLEDYGLSDKLKERLEER-AEGILIAGAPGAGKSTFAQALAEFYASQ 290 (604)
T ss_pred chhhcCCCHHHHHHHHhh-hcceEEecCCCCChhHHHHHHHHHHHhc
Confidence 588999999999999887 5899999999999999999999988543
No 308
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.22 E-value=0.00024 Score=65.92 Aligned_cols=34 Identities=41% Similarity=0.651 Sum_probs=30.2
Q ss_pred cccccccCCCCCcHHHHHHHHHHhcCCcEEEEec
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLEL 259 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~ 259 (504)
++.++|.||+|+|||++++.+|+.+++++++.+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 3468999999999999999999999999887764
No 309
>PRK08233 hypothetical protein; Provisional
Probab=97.21 E-value=0.0011 Score=61.49 Aligned_cols=30 Identities=17% Similarity=0.283 Sum_probs=23.8
Q ss_pred ccccCCCCCcHHHHHHHHHHhcC-CcEEEEe
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLN-YDVYDLE 258 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~-~~i~~l~ 258 (504)
+.+.|+||+||||+++.||..++ ..++..+
T Consensus 6 I~I~G~~GsGKtTla~~L~~~l~~~~~~~~d 36 (182)
T PRK08233 6 ITIAAVSGGGKTTLTERLTHKLKNSKALYFD 36 (182)
T ss_pred EEEECCCCCCHHHHHHHHHhhCCCCceEEEC
Confidence 56789999999999999999885 3444443
No 310
>PTZ00202 tuzin; Provisional
Probab=97.20 E-value=0.0095 Score=62.54 Aligned_cols=56 Identities=14% Similarity=0.203 Sum_probs=43.9
Q ss_pred CccccccccChhHHHHHHHhh-------cccccccCCCCCcHHHHHHHHHHhcCCcEEEEecc
Q 037859 205 PATFDTLAMETKKKEEIKKDL-------KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELT 260 (504)
Q Consensus 205 p~~f~~~~~~~~~k~~i~~~l-------~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~ 260 (504)
|.....+.+.+....++...+ ++-+.|.||+|||||++++.++..++...|.+|..
T Consensus 258 Pa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNpr 320 (550)
T PTZ00202 258 PAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVR 320 (550)
T ss_pred CCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCC
Confidence 444556677776666665554 45578999999999999999999999888888877
No 311
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.19 E-value=0.0012 Score=63.30 Aligned_cols=35 Identities=31% Similarity=0.563 Sum_probs=27.6
Q ss_pred ccc--ccccCCCCCcHHHHHHHHHHhc---CCcEEEEecc
Q 037859 226 KKG--YLLYGPPGTGKSTMIAAMANFL---NYDVYDLELT 260 (504)
Q Consensus 226 ~rg--~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~ 260 (504)
++| ++++||||||||+++..+|... +.++.+++..
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 445 8899999999999999998665 5667667553
No 312
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.18 E-value=0.00026 Score=66.40 Aligned_cols=29 Identities=34% Similarity=0.534 Sum_probs=25.8
Q ss_pred ccccCCCCCcHHHHHHHHHHhcCCcEEEE
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLNYDVYDL 257 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~~~i~~l 257 (504)
++++||||+|||++++.||..+++..+.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~ 30 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIST 30 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 68999999999999999999998776654
No 313
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.18 E-value=0.00028 Score=64.99 Aligned_cols=31 Identities=35% Similarity=0.523 Sum_probs=28.5
Q ss_pred cccccCCCCCcHHHHHHHHHHhcCCcEEEEe
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFLNYDVYDLE 258 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~ 258 (504)
.++|.|+||||||++++.+|..+|+++++.+
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 4788999999999999999999999998765
No 314
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.17 E-value=0.0017 Score=57.58 Aligned_cols=25 Identities=32% Similarity=0.442 Sum_probs=22.6
Q ss_pred cccccCCCCCcHHHHHHHHHHhcCC
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFLNY 252 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l~~ 252 (504)
-++|.|+.|+|||++++++++.++.
T Consensus 24 ~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 24 VVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 3779999999999999999999864
No 315
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.15 E-value=0.0023 Score=67.35 Aligned_cols=116 Identities=21% Similarity=0.182 Sum_probs=69.2
Q ss_pred cccccCCCCCcHHHHHHHHHHhcCCc-EEEEeccccCChHHH---HHHHHhcc--CCeEEEEeccccccccccccccccc
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFLNYD-VYDLELTTVQDNSEL---RSLLIDTS--SKSILVIEDIDCSLDLTGQREKKKE 301 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l~~~-i~~l~~~~~~~~~~l---~~l~~~~~--~~~Il~iDeiD~~~~~~~~~~~~~~ 301 (504)
-++++||-+||||++++-+...+.-. +|...+.......++ .+.+.... .++.||||||+++=
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l~d~~~~~~~~~~~~~~yifLDEIq~v~----------- 107 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIELLDLLRAYIELKEREKSYIFLDEIQNVP----------- 107 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhHHHHHHHHHHhhccCCceEEEecccCch-----------
Confidence 68899999999999998888877554 343333333333333 33333333 45899999999841
Q ss_pred ccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccCCCceEEEEecCCCCCC-ChhhhcCCCceeEEEecCCCH
Q 037859 302 KDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERIIVFTTNYVDKL-DPALIRRGRMDKHIEMSYCCF 380 (504)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~~~~ivI~tTN~~e~L-d~ALlRpGR~d~~I~~~~p~~ 380 (504)
.-...+..| .|.. .. .++|.++|..-.+ ..+-.=|||. ..+.+.+.++
T Consensus 108 ----------------------~W~~~lk~l---~d~~----~~-~v~itgsss~ll~~~~~~~L~GR~-~~~~l~PlSF 156 (398)
T COG1373 108 ----------------------DWERALKYL---YDRG----NL-DVLITGSSSSLLSKEISESLAGRG-KDLELYPLSF 156 (398)
T ss_pred ----------------------hHHHHHHHH---Hccc----cc-eEEEECCchhhhccchhhhcCCCc-eeEEECCCCH
Confidence 011222322 2321 11 3556555544322 3344456796 6888988899
Q ss_pred HHHHH
Q 037859 381 EAFKV 385 (504)
Q Consensus 381 e~~~~ 385 (504)
.++-.
T Consensus 157 ~Efl~ 161 (398)
T COG1373 157 REFLK 161 (398)
T ss_pred HHHHh
Confidence 88854
No 316
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.14 E-value=0.00038 Score=60.69 Aligned_cols=41 Identities=24% Similarity=0.256 Sum_probs=31.4
Q ss_pred ccccChhHHHHHHHhh---------ccc--ccccCCCCCcHHHHHHHHHHhc
Q 037859 210 TLAMETKKKEEIKKDL---------KKG--YLLYGPPGTGKSTMIAAMANFL 250 (504)
Q Consensus 210 ~~~~~~~~k~~i~~~l---------~rg--~LL~GPpGtGKTsla~aiA~~l 250 (504)
.+.+++-.++.|++.+ ++. +.|+||||||||.+++-||+.+
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 4566666666666666 333 4489999999999999999985
No 317
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=97.14 E-value=0.00043 Score=70.45 Aligned_cols=46 Identities=24% Similarity=0.348 Sum_probs=37.0
Q ss_pred cChhHHHHHHHhh------------cccccccCCCCCcHHHHHHHHHHhcCCcEEEEe
Q 037859 213 METKKKEEIKKDL------------KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLE 258 (504)
Q Consensus 213 ~~~~~k~~i~~~l------------~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~ 258 (504)
++++.++.+.+.+ +..+.|.|+||||||++++.+|..+|+++++++
T Consensus 108 l~~~~~~~~~~~l~~~~~~~~~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 108 ASPAQLARVRDALSGMLGAGRRAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred CCHHHHHHHHHHHHHHHhhhhhccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 5566555555554 455899999999999999999999999999654
No 318
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.13 E-value=0.00031 Score=63.45 Aligned_cols=28 Identities=29% Similarity=0.536 Sum_probs=25.4
Q ss_pred ccccCCCCCcHHHHHHHHHHhcCCcEEE
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLNYDVYD 256 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~~~i~~ 256 (504)
+-+.|||||||||+++-||.++|++++.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 3468999999999999999999999885
No 319
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.13 E-value=0.0018 Score=67.15 Aligned_cols=23 Identities=30% Similarity=0.616 Sum_probs=21.1
Q ss_pred ccccCCCCCcHHHHHHHHHHhcC
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLN 251 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~ 251 (504)
.|++||||||||+|++.|++...
T Consensus 172 ~lIvgppGvGKTTLaK~Ian~I~ 194 (416)
T PRK09376 172 GLIVAPPKAGKTVLLQNIANSIT 194 (416)
T ss_pred EEEeCCCCCChhHHHHHHHHHHH
Confidence 78899999999999999998764
No 320
>PRK06762 hypothetical protein; Provisional
Probab=97.13 E-value=0.00036 Score=63.98 Aligned_cols=32 Identities=19% Similarity=0.303 Sum_probs=26.9
Q ss_pred ccccccCCCCCcHHHHHHHHHHhcCCcEEEEe
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANFLNYDVYDLE 258 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~ 258 (504)
+-++|+|+||+|||++|+.++..++..++.++
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~ 34 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLGRGTLLVS 34 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEec
Confidence 45789999999999999999999865565554
No 321
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.12 E-value=0.0024 Score=66.77 Aligned_cols=25 Identities=44% Similarity=0.792 Sum_probs=21.9
Q ss_pred cccccccCCCCCcHHHHHHHHHHhc
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFL 250 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l 250 (504)
++-++|+||+|+||||++.-+|..+
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~ 198 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIY 198 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3458899999999999999999865
No 322
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=97.11 E-value=0.0011 Score=58.00 Aligned_cols=70 Identities=31% Similarity=0.405 Sum_probs=46.7
Q ss_pred HHHHhhccc--ccccCCCCCcHHHHHHHHHHhcCC--------------------cEEEEeccccCChHHHHHH--HHhc
Q 037859 220 EIKKDLKKG--YLLYGPPGTGKSTMIAAMANFLNY--------------------DVYDLELTTVQDNSELRSL--LIDT 275 (504)
Q Consensus 220 ~i~~~l~rg--~LL~GPpGtGKTsla~aiA~~l~~--------------------~i~~l~~~~~~~~~~l~~l--~~~~ 275 (504)
.+...++.| ++|+|+=|+|||++++++|..+|. ++|-+|+--+.+..++..+ +...
T Consensus 7 ~l~~~l~~g~vi~L~GdLGaGKTtf~r~l~~~lg~~~~V~SPTF~l~~~Y~~~~~~l~H~DLYRl~~~~e~~~~g~~e~~ 86 (123)
T PF02367_consen 7 KLAQILKPGDVILLSGDLGAGKTTFVRGLARALGIDEEVTSPTFSLVNEYEGGNIPLYHFDLYRLEDPEELEDLGLEEYL 86 (123)
T ss_dssp HHHHHHSS-EEEEEEESTTSSHHHHHHHHHHHTT--S----TTTTSEEEEEETTEEEEEEE-TT-SSTHHHHHCTTTTCS
T ss_pred HHHHhCCCCCEEEEECCCCCCHHHHHHHHHHHcCCCCCcCCCCeEEEEEecCCCceEEEeeccccCCHHHHHHCCchhhh
Confidence 344444444 889999999999999999998853 4555666666666655443 2334
Q ss_pred cCCeEEEEeccccc
Q 037859 276 SSKSILVIEDIDCS 289 (504)
Q Consensus 276 ~~~~Il~iDeiD~~ 289 (504)
...+|.+||=.+.+
T Consensus 87 ~~~~i~~IEW~e~~ 100 (123)
T PF02367_consen 87 FEDGICVIEWPERL 100 (123)
T ss_dssp SSSEEEEEESGGGG
T ss_pred CCCCEEEEECcccc
Confidence 56889998766554
No 323
>PF13245 AAA_19: Part of AAA domain
Probab=97.10 E-value=0.00057 Score=54.49 Aligned_cols=33 Identities=39% Similarity=0.618 Sum_probs=21.3
Q ss_pred cccc-ccCCCCCcHH-HHHHHHHHhc------CCcEEEEec
Q 037859 227 KGYL-LYGPPGTGKS-TMIAAMANFL------NYDVYDLEL 259 (504)
Q Consensus 227 rg~L-L~GPpGtGKT-sla~aiA~~l------~~~i~~l~~ 259 (504)
.+++ +.|||||||| ++++.++..+ +..+..+..
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~ 50 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAP 50 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECC
Confidence 4555 5999999999 5555555555 444555543
No 324
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=97.09 E-value=0.0028 Score=64.14 Aligned_cols=93 Identities=14% Similarity=0.224 Sum_probs=69.8
Q ss_pred ceeeecCCCccccccccChhHHHHHHHhh------cccccccCCCCCcHHHHHHHHHHhc---CCcEEEEeccccCChHH
Q 037859 197 WSHVFFEHPATFDTLAMETKKKEEIKKDL------KKGYLLYGPPGTGKSTMIAAMANFL---NYDVYDLELTTVQDNSE 267 (504)
Q Consensus 197 w~~~~~~~p~~f~~~~~~~~~k~~i~~~l------~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~~~~~~ 267 (504)
-..+++.+-..|+.++......+.++... --.+|+.|..||||-.+|+|.-... +.|+..++|.++-++..
T Consensus 192 ~~~~~~~~~~~F~~~v~~S~~mk~~v~qA~k~AmlDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~~a 271 (511)
T COG3283 192 LQNVAAQDVSGFEQIVAVSPKMKHVVEQAQKLAMLDAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPEDAA 271 (511)
T ss_pred HhhcccccccchHHHhhccHHHHHHHHHHHHhhccCCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCchhHh
Confidence 44567778888999999888887777765 4568999999999999999874433 67899999999865444
Q ss_pred HHHHHHhc------------cCCeEEEEeccccc
Q 037859 268 LRSLLIDT------------SSKSILVIEDIDCS 289 (504)
Q Consensus 268 l~~l~~~~------------~~~~Il~iDeiD~~ 289 (504)
-..+|..+ ....-+|+|||-.+
T Consensus 272 EsElFG~apg~~gk~GffE~AngGTVlLDeIgEm 305 (511)
T COG3283 272 ESELFGHAPGDEGKKGFFEQANGGTVLLDEIGEM 305 (511)
T ss_pred HHHHhcCCCCCCCccchhhhccCCeEEeehhhhc
Confidence 44445433 35567889998654
No 325
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.09 E-value=0.0011 Score=66.43 Aligned_cols=35 Identities=31% Similarity=0.374 Sum_probs=27.4
Q ss_pred ccccccCCCCCcHHHHHHHHHHhc----C-CcEEEEeccc
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANFL----N-YDVYDLELTT 261 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~l----~-~~i~~l~~~~ 261 (504)
+-++|.||+|+|||+++..+|.++ + ..+..+++..
T Consensus 195 ~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 347899999999999999999876 3 5666665544
No 326
>PRK04296 thymidine kinase; Provisional
Probab=97.09 E-value=0.0037 Score=58.91 Aligned_cols=29 Identities=28% Similarity=0.342 Sum_probs=23.1
Q ss_pred ccccCCCCCcHHHHHHHHHHhc---CCcEEEE
Q 037859 229 YLLYGPPGTGKSTMIAAMANFL---NYDVYDL 257 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l---~~~i~~l 257 (504)
.|++||||+|||+++..++..+ +..++.+
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~ 36 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEERGMKVLVF 36 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 6789999999999998887665 5555555
No 327
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.08 E-value=0.0088 Score=69.53 Aligned_cols=57 Identities=19% Similarity=0.249 Sum_probs=36.9
Q ss_pred cCCCccccccccChhHHHHHHHhh-cccccccCCCCCcHHHHHHHHHHhcCCcEEEEec
Q 037859 202 FEHPATFDTLAMETKKKEEIKKDL-KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLEL 259 (504)
Q Consensus 202 ~~~p~~f~~~~~~~~~k~~i~~~l-~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~ 259 (504)
+..|..=..++-.+.+.+.+-... .+-++++||+|.|||+++...+...+ ++.-+.+
T Consensus 7 ~~~p~~~~~~~~R~rl~~~l~~~~~~~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l 64 (903)
T PRK04841 7 LSRPVRLHNTVVRERLLAKLSGANNYRLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSL 64 (903)
T ss_pred cCCCCCccccCcchHHHHHHhcccCCCeEEEECCCCCCHHHHHHHHHHhCC-CeEEEec
Confidence 334444445555565555443322 34588999999999999999887766 5544444
No 328
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.06 E-value=0.00091 Score=66.51 Aligned_cols=85 Identities=24% Similarity=0.416 Sum_probs=52.3
Q ss_pred CCccccccccChhHHHHHHHhh------cccccccCCCCCcHHHHHHHHHHhcC---CcEEEEecc-cc-----------
Q 037859 204 HPATFDTLAMETKKKEEIKKDL------KKGYLLYGPPGTGKSTMIAAMANFLN---YDVYDLELT-TV----------- 262 (504)
Q Consensus 204 ~p~~f~~~~~~~~~k~~i~~~l------~rg~LL~GPpGtGKTsla~aiA~~l~---~~i~~l~~~-~~----------- 262 (504)
.+.+++.+...+...+.+.+.+ +..+|+.||+|+|||++.+++..++. ..++.++-. .+
T Consensus 99 ~~~sle~l~~~~~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~~~~~~~~~ 178 (270)
T PF00437_consen 99 KPFSLEDLGESGSIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLPGPNQIQIQ 178 (270)
T ss_dssp S--CHCCCCHTHHCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--SCSSEEEEE
T ss_pred ccccHhhccCchhhHHHHHHHHhhccccceEEEEECCCccccchHHHHHhhhccccccceEEeccccceeecccceEEEE
Confidence 4446888877665555555554 45689999999999999999998873 334443211 00
Q ss_pred --CChHHHHHHHHhc--cCCeEEEEecccc
Q 037859 263 --QDNSELRSLLIDT--SSKSILVIEDIDC 288 (504)
Q Consensus 263 --~~~~~l~~l~~~~--~~~~Il~iDeiD~ 288 (504)
.....+..++..+ ..|.+|+|.||-.
T Consensus 179 ~~~~~~~~~~~l~~~LR~~pD~iiigEiR~ 208 (270)
T PF00437_consen 179 TRRDEISYEDLLKSALRQDPDVIIIGEIRD 208 (270)
T ss_dssp EETTTBSHHHHHHHHTTS--SEEEESCE-S
T ss_pred eecCcccHHHHHHHHhcCCCCcccccccCC
Confidence 1223345555443 4688999999854
No 329
>PRK14530 adenylate kinase; Provisional
Probab=97.06 E-value=0.00041 Score=66.65 Aligned_cols=30 Identities=30% Similarity=0.451 Sum_probs=26.5
Q ss_pred cccccCCCCCcHHHHHHHHHHhcCCcEEEE
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFLNYDVYDL 257 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l 257 (504)
.++|.||||+||||+++.||..++++.+..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 488999999999999999999999876643
No 330
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.05 E-value=0.00033 Score=64.09 Aligned_cols=28 Identities=36% Similarity=0.631 Sum_probs=25.4
Q ss_pred ccccCCCCCcHHHHHHHHHHhcCCcEEEE
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLNYDVYDL 257 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~~~i~~l 257 (504)
+++.|.|||||||+++.++ .+|++.+.+
T Consensus 3 I~ITGTPGvGKTT~~~~L~-~lg~~~i~l 30 (180)
T COG1936 3 IAITGTPGVGKTTVCKLLR-ELGYKVIEL 30 (180)
T ss_pred EEEeCCCCCchHHHHHHHH-HhCCceeeH
Confidence 5789999999999999999 999987765
No 331
>PRK02496 adk adenylate kinase; Provisional
Probab=97.03 E-value=0.0004 Score=64.88 Aligned_cols=29 Identities=31% Similarity=0.589 Sum_probs=26.0
Q ss_pred ccccCCCCCcHHHHHHHHHHhcCCcEEEE
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLNYDVYDL 257 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~~~i~~l 257 (504)
+++.||||+|||++++.||..++++.+..
T Consensus 4 i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 78899999999999999999999876654
No 332
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.03 E-value=0.00046 Score=64.31 Aligned_cols=29 Identities=21% Similarity=0.387 Sum_probs=25.0
Q ss_pred cccccCCCCCcHHHHHHHHHHhcCCcEEE
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFLNYDVYD 256 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l~~~i~~ 256 (504)
-+++.||||+||||+++.+|..+|+..+.
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~~~~ 33 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFTHLS 33 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 46789999999999999999998876543
No 333
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.02 E-value=0.0019 Score=64.87 Aligned_cols=130 Identities=22% Similarity=0.250 Sum_probs=81.8
Q ss_pred cccccccCCCCCcHHHHHHHH---HHhcCCcEEEEeccccC-C--------------------------hHHHHHHHHhc
Q 037859 226 KKGYLLYGPPGTGKSTMIAAM---ANFLNYDVYDLELTTVQ-D--------------------------NSELRSLLIDT 275 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~ai---A~~l~~~i~~l~~~~~~-~--------------------------~~~l~~l~~~~ 275 (504)
...+++.||-|+|||.++... +.+.|-+++.+.++..- . .+.+.+++...
T Consensus 49 snsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L 128 (408)
T KOG2228|consen 49 SNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALKGITRQLALELNRIVKSFGSFTENLSKLLEAL 128 (408)
T ss_pred CCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHHHHHHHHHHHHHhhhheeecccchhHHHHHHHH
Confidence 567999999999999987643 33677788877666531 1 11222222221
Q ss_pred -------cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccCCCceE
Q 037859 276 -------SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERI 348 (504)
Q Consensus 276 -------~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~~~~i 348 (504)
+.+.|.++||||.+++ ..+.+ -|-|.+|-..+ .+.++.
T Consensus 129 ~~~~~~t~~~ViFIldEfDlf~~--------------------------------h~rQt--llYnlfDisqs-~r~Pic 173 (408)
T KOG2228|consen 129 KKGDETTSGKVIFILDEFDLFAP--------------------------------HSRQT--LLYNLFDISQS-ARAPIC 173 (408)
T ss_pred hcCCCCCCceEEEEeehhhcccc--------------------------------chhhH--HHHHHHHHHhh-cCCCeE
Confidence 1345677889998642 11112 24456665443 345677
Q ss_pred EEEecCCC---CCCChhhhcCCCceeE-EEecCC-CHHHHHHHHHHhcC
Q 037859 349 IVFTTNYV---DKLDPALIRRGRMDKH-IEMSYC-CFEAFKVLAKNYLD 392 (504)
Q Consensus 349 vI~tTN~~---e~Ld~ALlRpGR~d~~-I~~~~p-~~e~~~~i~~~~l~ 392 (504)
||+.|.+. |.|...... ||... |.|..+ ..++...+++..+.
T Consensus 174 iig~Ttrld~lE~LEKRVKS--RFshr~I~m~~~~~l~~yv~l~r~ll~ 220 (408)
T KOG2228|consen 174 IIGVTTRLDILELLEKRVKS--RFSHRVIFMLPSLPLGDYVDLYRKLLS 220 (408)
T ss_pred EEEeeccccHHHHHHHHHHh--hcccceeeccCCCChHHHHHHHHHHhc
Confidence 78766554 455677788 99765 666554 68899999998873
No 334
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.01 E-value=0.0014 Score=59.49 Aligned_cols=25 Identities=44% Similarity=0.703 Sum_probs=22.2
Q ss_pred ccccccCCCCCcHHHHHHHHHHhcC
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANFLN 251 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~l~ 251 (504)
.-+.|.||+|+|||+|+++|++.+.
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~ 50 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLK 50 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3488999999999999999999774
No 335
>PRK06547 hypothetical protein; Provisional
Probab=97.00 E-value=0.00046 Score=64.03 Aligned_cols=33 Identities=27% Similarity=0.464 Sum_probs=28.1
Q ss_pred cccccccCCCCCcHHHHHHHHHHhcCCcEEEEe
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLE 258 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~ 258 (504)
+.-+++.||+|||||++++.+|..++.+++.++
T Consensus 15 ~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 15 MITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 455788999999999999999999988776554
No 336
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.99 E-value=0.00077 Score=52.57 Aligned_cols=30 Identities=33% Similarity=0.442 Sum_probs=23.7
Q ss_pred ccccCCCCCcHHHHHHHHHHhc-CCcEEEEe
Q 037859 229 YLLYGPPGTGKSTMIAAMANFL-NYDVYDLE 258 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l-~~~i~~l~ 258 (504)
+.+.|+||+|||+++++++..+ +.++..++
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l~~~~~~~i~ 32 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQLGGRSVVVLD 32 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCEEEEe
Confidence 4678999999999999999996 34444443
No 337
>PRK14528 adenylate kinase; Provisional
Probab=96.98 E-value=0.00051 Score=64.57 Aligned_cols=30 Identities=27% Similarity=0.495 Sum_probs=26.5
Q ss_pred cccccCCCCCcHHHHHHHHHHhcCCcEEEE
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFLNYDVYDL 257 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l 257 (504)
-+++.||||+|||++++.+|..++++.+..
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 478999999999999999999999876653
No 338
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.97 E-value=0.002 Score=64.16 Aligned_cols=25 Identities=32% Similarity=0.620 Sum_probs=22.8
Q ss_pred ccccccCCCCCcHHHHHHHHHHhcC
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANFLN 251 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~l~ 251 (504)
+++++.||||+|||++.+++++.+.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC
Confidence 4689999999999999999999874
No 339
>COG1485 Predicted ATPase [General function prediction only]
Probab=96.96 E-value=0.0011 Score=67.00 Aligned_cols=26 Identities=27% Similarity=0.519 Sum_probs=23.0
Q ss_pred cccccccCCCCCcHHHHHHHHHHhcC
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFLN 251 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l~ 251 (504)
++|+.||||-|+|||.|.-..-..+-
T Consensus 65 ~~GlYl~GgVGrGKT~LMD~Fy~~lp 90 (367)
T COG1485 65 VRGLYLWGGVGRGKTMLMDLFYESLP 90 (367)
T ss_pred CceEEEECCCCccHHHHHHHHHhhCC
Confidence 69999999999999999988877653
No 340
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.95 E-value=0.002 Score=59.59 Aligned_cols=62 Identities=21% Similarity=0.248 Sum_probs=43.8
Q ss_pred ccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccCCh-----------------------HHHHHHHHhccCCeEEEEec
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQDN-----------------------SELRSLLIDTSSKSILVIED 285 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~~-----------------------~~l~~l~~~~~~~~Il~iDe 285 (504)
+|+.||||+|||++|..+|...+.+.+++......+. .+|.+.+.+.+.+.+|+||-
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~~~~VLIDc 81 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKELDPGDVVLIDC 81 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCCCCEEEEEc
Confidence 5789999999999999999887778877765543221 23344443334566899988
Q ss_pred ccccc
Q 037859 286 IDCSL 290 (504)
Q Consensus 286 iD~~~ 290 (504)
+..++
T Consensus 82 lt~~~ 86 (169)
T cd00544 82 LTLWV 86 (169)
T ss_pred HhHHH
Confidence 87754
No 341
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.94 E-value=0.002 Score=62.69 Aligned_cols=33 Identities=27% Similarity=0.284 Sum_probs=25.2
Q ss_pred ccccccCCCCCcHHHHHHHHHHhc---CCcEEEEec
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANFL---NYDVYDLEL 259 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~ 259 (504)
..++++||||||||+++..++... +.+++++++
T Consensus 26 ~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~ 61 (234)
T PRK06067 26 SLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITT 61 (234)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEc
Confidence 348899999999999999996542 556665554
No 342
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.92 E-value=0.00048 Score=63.92 Aligned_cols=31 Identities=23% Similarity=0.324 Sum_probs=26.2
Q ss_pred ccccccCCCCCcHHHHHHHHHHhcCCcEEEE
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANFLNYDVYDL 257 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l 257 (504)
+-++|.||||+||||++++++..++.+++.+
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~ 33 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHF 33 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCcccc
Confidence 4578999999999999999999987765543
No 343
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.92 E-value=0.0079 Score=62.82 Aligned_cols=44 Identities=32% Similarity=0.333 Sum_probs=31.3
Q ss_pred EEEEecC--CCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCc
Q 037859 348 IIVFTTN--YVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDI 393 (504)
Q Consensus 348 ivI~tTN--~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~ 393 (504)
+|+.|+| ....|..||-. |.-..|.++-++.+.-+..+...|..
T Consensus 186 VIFlT~dv~~~k~LskaLPn--~vf~tI~L~Das~~~Ak~yV~~~L~~ 231 (431)
T PF10443_consen 186 VIFLTDDVSYSKPLSKALPN--RVFKTISLSDASPESAKQYVLSQLDE 231 (431)
T ss_pred EEEECCCCchhhhHHHhCCC--CceeEEeecCCCHHHHHHHHHHHhcc
Confidence 4444444 22346667755 77789999999999988888888864
No 344
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.91 E-value=0.00063 Score=66.11 Aligned_cols=29 Identities=28% Similarity=0.566 Sum_probs=26.4
Q ss_pred ccccCCCCCcHHHHHHHHHHhcCCcEEEE
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLNYDVYDL 257 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~~~i~~l 257 (504)
++|.||||+|||++++.+|..++++.+.+
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~g~~~is~ 37 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKENLKHINM 37 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 88999999999999999999999877654
No 345
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=96.90 E-value=0.0019 Score=65.52 Aligned_cols=72 Identities=24% Similarity=0.380 Sum_probs=44.8
Q ss_pred ChhHHHHHHHhh----------cccccccCCCCCcHHHHHHHHHHhcCCcEEE----EeccccCChHHHHHHHHhccCCe
Q 037859 214 ETKKKEEIKKDL----------KKGYLLYGPPGTGKSTMIAAMANFLNYDVYD----LELTTVQDNSELRSLLIDTSSKS 279 (504)
Q Consensus 214 ~~~~k~~i~~~l----------~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~----l~~~~~~~~~~l~~l~~~~~~~~ 279 (504)
+++.++.+.+.+ .+-++|+|+.|+|||+++..|...+|-.-.. +.+...... +..+.....+.
T Consensus 54 d~~~~~~l~~~lg~~L~~~~~~~~~~~l~G~g~nGKStl~~~l~~l~G~~~~~~~~~~~~~~~~~~---~f~~a~l~gk~ 130 (304)
T TIGR01613 54 DNELIEYLQRVIGYSLTGNYTEQKLFFLYGNGGNGKSTFQNLLSNLLGDYATTAVASLKMNEFQEH---RFGLARLEGKR 130 (304)
T ss_pred CHHHHHHHHHHHhHHhcCCCCceEEEEEECCCCCcHHHHHHHHHHHhChhhccCCcchhhhhccCC---CchhhhhcCCE
Confidence 444555555554 4558899999999999999999888754311 112222110 11122345678
Q ss_pred EEEEecccc
Q 037859 280 ILVIEDIDC 288 (504)
Q Consensus 280 Il~iDeiD~ 288 (504)
+++.+|++.
T Consensus 131 l~~~~E~~~ 139 (304)
T TIGR01613 131 AVIGDEVQK 139 (304)
T ss_pred EEEecCCCC
Confidence 899999875
No 346
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.90 E-value=0.0028 Score=61.07 Aligned_cols=33 Identities=18% Similarity=0.229 Sum_probs=25.6
Q ss_pred ccccCCCCCcHHHHHHHHHHhc---C------CcEEEEeccc
Q 037859 229 YLLYGPPGTGKSTMIAAMANFL---N------YDVYDLELTT 261 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l---~------~~i~~l~~~~ 261 (504)
+.++||||+|||+++..+|... + ..+++++...
T Consensus 22 ~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 22 TEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred EEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 7899999999999999987653 2 4566666544
No 347
>PRK14529 adenylate kinase; Provisional
Probab=96.88 E-value=0.00075 Score=65.22 Aligned_cols=27 Identities=30% Similarity=0.481 Sum_probs=24.8
Q ss_pred ccccCCCCCcHHHHHHHHHHhcCCcEE
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLNYDVY 255 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~~~i~ 255 (504)
++|.||||+|||++++.||..++++.+
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~~i 29 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLAHI 29 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCc
Confidence 688999999999999999999998755
No 348
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.86 E-value=0.00073 Score=64.65 Aligned_cols=28 Identities=32% Similarity=0.543 Sum_probs=25.3
Q ss_pred ccccCCCCCcHHHHHHHHHHhcCCcEEE
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLNYDVYD 256 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~~~i~~ 256 (504)
+++.||||+|||++++.||..+|+..+.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is 29 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIS 29 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeee
Confidence 6889999999999999999999877665
No 349
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.85 E-value=0.00077 Score=64.76 Aligned_cols=29 Identities=31% Similarity=0.484 Sum_probs=25.9
Q ss_pred ccccCCCCCcHHHHHHHHHHhcCCcEEEE
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLNYDVYDL 257 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~~~i~~l 257 (504)
++++||||+|||++++.||..+++..+.+
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~~~~is~ 31 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYGIPHIST 31 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 78999999999999999999999776653
No 350
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=96.84 E-value=0.012 Score=66.89 Aligned_cols=23 Identities=17% Similarity=0.381 Sum_probs=20.8
Q ss_pred ccccccCCCCCcHHHHHHHHHHh
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~ 249 (504)
+.++|.||.|+|||++.+.++..
T Consensus 323 ~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 323 RVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred eEEEEECCCCCCchHHHHHHHHH
Confidence 56899999999999999999865
No 351
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.84 E-value=0.014 Score=56.87 Aligned_cols=125 Identities=18% Similarity=0.296 Sum_probs=76.0
Q ss_pred ccccccCCCCCcHHHHHHHHHHhcCC---cEEEEeccc---------------cCChHHHH-----------HHHHhc--
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANFLNY---DVYDLELTT---------------VQDNSELR-----------SLLIDT-- 275 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~l~~---~i~~l~~~~---------------~~~~~~l~-----------~l~~~~-- 275 (504)
-.+++.||+|||||+++..+-..+.. +++.+.-.. +...+++. +.....
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k~~~ 93 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKKSPQ 93 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 35788999999999999999876643 222221100 01111111 111111
Q ss_pred ---cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccCCCceEEEEe
Q 037859 276 ---SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERIIVFT 352 (504)
Q Consensus 276 ---~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~~~~ivI~t 352 (504)
..+++|+|||+-.- ......+..+++. | ..-++-+|+.
T Consensus 94 ~k~~~~~LiIlDD~~~~---------------------------------~~k~~~l~~~~~~--g----RH~~is~i~l 134 (241)
T PF04665_consen 94 KKNNPRFLIILDDLGDK---------------------------------KLKSKILRQFFNN--G----RHYNISIIFL 134 (241)
T ss_pred cCCCCCeEEEEeCCCCc---------------------------------hhhhHHHHHHHhc--c----cccceEEEEE
Confidence 23789999996320 0112245666652 2 2234678888
Q ss_pred cCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCc
Q 037859 353 TNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDI 393 (504)
Q Consensus 353 TN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~ 393 (504)
+...-.|||.++. -++..+-+. -+...++.|++.+...
T Consensus 135 ~Q~~~~lp~~iR~--n~~y~i~~~-~s~~dl~~i~~~~~~~ 172 (241)
T PF04665_consen 135 SQSYFHLPPNIRS--NIDYFIIFN-NSKRDLENIYRNMNIK 172 (241)
T ss_pred eeecccCCHHHhh--cceEEEEec-CcHHHHHHHHHhcccc
Confidence 8888899999876 788777775 5777888888887543
No 352
>PRK04182 cytidylate kinase; Provisional
Probab=96.84 E-value=0.0008 Score=62.15 Aligned_cols=28 Identities=32% Similarity=0.557 Sum_probs=25.9
Q ss_pred ccccCCCCCcHHHHHHHHHHhcCCcEEE
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLNYDVYD 256 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~~~i~~ 256 (504)
+++.|+||||||++++.+|..+++++++
T Consensus 3 I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 3 ITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 6789999999999999999999998776
No 353
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=96.84 E-value=0.0023 Score=63.12 Aligned_cols=64 Identities=19% Similarity=0.364 Sum_probs=52.0
Q ss_pred cccccccCCCCCcHHHHHHHHH------HhcCCcEEEEeccccCChHHHHHHHHhc-----------------cCCeEEE
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMA------NFLNYDVYDLELTTVQDNSELRSLLIDT-----------------SSKSILV 282 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA------~~l~~~i~~l~~~~~~~~~~l~~l~~~~-----------------~~~~Il~ 282 (504)
+..+||.||.|.|||.||+-|- +.+.-+++.++|..+.++..+..+|... ....++|
T Consensus 208 r~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadggmlf 287 (531)
T COG4650 208 RAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGGMLF 287 (531)
T ss_pred cCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCCceEe
Confidence 5679999999999999999884 3457789999999998877777777543 2457999
Q ss_pred Eeccccc
Q 037859 283 IEDIDCS 289 (504)
Q Consensus 283 iDeiD~~ 289 (504)
+|||-.+
T Consensus 288 ldeigel 294 (531)
T COG4650 288 LDEIGEL 294 (531)
T ss_pred hHhhhhc
Confidence 9999764
No 354
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.84 E-value=0.0046 Score=60.18 Aligned_cols=32 Identities=28% Similarity=0.304 Sum_probs=22.5
Q ss_pred ccccccCCCCCcHHHHHHHHHHhc---CCcEEEEe
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANFL---NYDVYDLE 258 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~ 258 (504)
.-+++.||||||||+++..++..+ +....++.
T Consensus 25 ~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~ 59 (230)
T PRK08533 25 SLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVS 59 (230)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 348899999999999976554433 44555554
No 355
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=96.82 E-value=0.0055 Score=69.87 Aligned_cols=63 Identities=14% Similarity=0.345 Sum_probs=39.1
Q ss_pred cccccccCCCCCcHHHHHHHHHHh-----cCC----------cEEEEeccccCCh--------------HHHHHHHHhcc
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANF-----LNY----------DVYDLELTTVQDN--------------SELRSLLIDTS 276 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~-----l~~----------~i~~l~~~~~~~~--------------~~l~~l~~~~~ 276 (504)
.+.+++.||.+.|||++.+.++-. .|+ ++++--+..+++. ..+..++..+.
T Consensus 327 ~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~~i~~~ig~~~si~~~lStfS~~m~~~~~Il~~~~ 406 (782)
T PRK00409 327 KTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFKEIFADIGDEQSIEQSLSTFSGHMTNIVRILEKAD 406 (782)
T ss_pred ceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccceEEEecCCccchhhchhHHHHHHHHHHHHHHhCC
Confidence 456899999999999999988642 232 2221111111111 12344455556
Q ss_pred CCeEEEEecccc
Q 037859 277 SKSILVIEDIDC 288 (504)
Q Consensus 277 ~~~Il~iDeiD~ 288 (504)
.+++++|||+-.
T Consensus 407 ~~sLvLlDE~~~ 418 (782)
T PRK00409 407 KNSLVLFDELGA 418 (782)
T ss_pred cCcEEEecCCCC
Confidence 899999999865
No 356
>PLN02199 shikimate kinase
Probab=96.82 E-value=0.0011 Score=66.30 Aligned_cols=40 Identities=33% Similarity=0.523 Sum_probs=33.7
Q ss_pred HHHHhh-cccccccCCCCCcHHHHHHHHHHhcCCcEEEEec
Q 037859 220 EIKKDL-KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLEL 259 (504)
Q Consensus 220 ~i~~~l-~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~ 259 (504)
+|..++ .+.++|.|++|+|||++++.+|..+|+++++.|.
T Consensus 95 ~i~~~l~~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~ 135 (303)
T PLN02199 95 EVKPYLNGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDT 135 (303)
T ss_pred HHHHHcCCCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHH
Confidence 444444 5679999999999999999999999999998763
No 357
>PLN02200 adenylate kinase family protein
Probab=96.80 E-value=0.00089 Score=65.33 Aligned_cols=29 Identities=21% Similarity=0.372 Sum_probs=25.2
Q ss_pred ccccccCCCCCcHHHHHHHHHHhcCCcEE
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANFLNYDVY 255 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~l~~~i~ 255 (504)
.-+++.||||+|||++++.+|..+|+..+
T Consensus 44 ~ii~I~G~PGSGKsT~a~~La~~~g~~hi 72 (234)
T PLN02200 44 FITFVLGGPGSGKGTQCEKIVETFGFKHL 72 (234)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 45788999999999999999999987643
No 358
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.79 E-value=0.0055 Score=59.28 Aligned_cols=62 Identities=21% Similarity=0.360 Sum_probs=40.8
Q ss_pred ccccccCCCCCcHHHHHHHHHH-hc----CCc---------EE---EEecc---ccC--------ChHHHHHHHHhccCC
Q 037859 227 KGYLLYGPPGTGKSTMIAAMAN-FL----NYD---------VY---DLELT---TVQ--------DNSELRSLLIDTSSK 278 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~-~l----~~~---------i~---~l~~~---~~~--------~~~~l~~l~~~~~~~ 278 (504)
+-++|.||.|+|||++.+.++. .+ |.. ++ ..... ++. .-.++..++..+..+
T Consensus 32 ~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~il~~~~~~ 111 (222)
T cd03287 32 YCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSVLTRMGASDSIQHGMSTFMVELSETSHILSNCTSR 111 (222)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceEEEEecCccccccccchHHHHHHHHHHHHHhCCCC
Confidence 4588999999999999999987 21 221 11 01111 111 113456777778899
Q ss_pred eEEEEecccc
Q 037859 279 SILVIEDIDC 288 (504)
Q Consensus 279 ~Il~iDeiD~ 288 (504)
++++|||+-.
T Consensus 112 sLvllDE~~~ 121 (222)
T cd03287 112 SLVILDELGR 121 (222)
T ss_pred eEEEEccCCC
Confidence 9999999865
No 359
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.79 E-value=0.00062 Score=58.94 Aligned_cols=22 Identities=36% Similarity=0.569 Sum_probs=20.7
Q ss_pred ccccCCCCCcHHHHHHHHHHhc
Q 037859 229 YLLYGPPGTGKSTMIAAMANFL 250 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l 250 (504)
++|.|+||+||||+++.|+..+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999987
No 360
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.78 E-value=0.0066 Score=68.74 Aligned_cols=40 Identities=28% Similarity=0.522 Sum_probs=32.0
Q ss_pred cccChhHHHHHHHhhc-ccccccCCCCCcHHHHHHHHHHhc
Q 037859 211 LAMETKKKEEIKKDLK-KGYLLYGPPGTGKSTMIAAMANFL 250 (504)
Q Consensus 211 ~~~~~~~k~~i~~~l~-rg~LL~GPpGtGKTsla~aiA~~l 250 (504)
..+.+++++.+..... +-.++.|+||||||++++++...+
T Consensus 322 ~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l~~i~~~~ 362 (720)
T TIGR01448 322 KGLSEEQKQALDTAIQHKVVILTGGPGTGKTTITRAIIELA 362 (720)
T ss_pred CCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4578888888877763 447789999999999999986655
No 361
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.77 E-value=0.0042 Score=63.21 Aligned_cols=63 Identities=13% Similarity=0.238 Sum_probs=38.8
Q ss_pred cccccCCCCCcHHHHHHHHHHhc---CCcEEEEecccc---------------------CChHHHHHHH---HhccCCeE
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFL---NYDVYDLELTTV---------------------QDNSELRSLL---IDTSSKSI 280 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~---------------------~~~~~l~~l~---~~~~~~~I 280 (504)
-+++|||||||||+|+..++... +..+.+++.... ...++....+ .......+
T Consensus 57 iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~~~~~~l 136 (321)
T TIGR02012 57 IIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVRSGAVDI 136 (321)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhccCCcE
Confidence 37899999999999988765433 455555544321 1111122222 22246789
Q ss_pred EEEecccccc
Q 037859 281 LVIEDIDCSL 290 (504)
Q Consensus 281 l~iDeiD~~~ 290 (504)
|+||-+-++.
T Consensus 137 IVIDSv~al~ 146 (321)
T TIGR02012 137 IVVDSVAALV 146 (321)
T ss_pred EEEcchhhhc
Confidence 9999998864
No 362
>PRK04040 adenylate kinase; Provisional
Probab=96.77 E-value=0.0009 Score=63.05 Aligned_cols=29 Identities=31% Similarity=0.566 Sum_probs=24.7
Q ss_pred ccccccCCCCCcHHHHHHHHHHhc--CCcEE
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANFL--NYDVY 255 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~l--~~~i~ 255 (504)
+-++++|+||||||++++.++..+ +++++
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~ 33 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLKEDYKIV 33 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhccCCeEE
Confidence 457899999999999999999999 55553
No 363
>PRK14527 adenylate kinase; Provisional
Probab=96.77 E-value=0.00072 Score=63.67 Aligned_cols=30 Identities=33% Similarity=0.541 Sum_probs=25.7
Q ss_pred ccccccCCCCCcHHHHHHHHHHhcCCcEEE
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANFLNYDVYD 256 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~l~~~i~~ 256 (504)
.-++++||||+|||++++.+|..++...+.
T Consensus 7 ~~i~i~G~pGsGKsT~a~~La~~~~~~~is 36 (191)
T PRK14527 7 KVVIFLGPPGAGKGTQAERLAQELGLKKLS 36 (191)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCCCC
Confidence 348899999999999999999999876443
No 364
>PRK13808 adenylate kinase; Provisional
Probab=96.77 E-value=0.0027 Score=64.79 Aligned_cols=29 Identities=28% Similarity=0.477 Sum_probs=25.4
Q ss_pred ccccCCCCCcHHHHHHHHHHhcCCcEEEE
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLNYDVYDL 257 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~~~i~~l 257 (504)
++|+||||+|||++++.||..+|+..+.+
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~ygl~~is~ 31 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYGIVQLST 31 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceecc
Confidence 78999999999999999999998765543
No 365
>PRK01184 hypothetical protein; Provisional
Probab=96.75 E-value=0.001 Score=62.15 Aligned_cols=29 Identities=24% Similarity=0.298 Sum_probs=24.4
Q ss_pred cccccCCCCCcHHHHHHHHHHhcCCcEEEE
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFLNYDVYDL 257 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l 257 (504)
-++|+||||+||||+++ ++.++|++++..
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 36789999999999987 888999887654
No 366
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.75 E-value=0.0089 Score=63.51 Aligned_cols=48 Identities=29% Similarity=0.433 Sum_probs=41.5
Q ss_pred ccccccccChhHHHHHHHhh--ccc-ccccCCCCCcHHHHHHHHHHhcCCc
Q 037859 206 ATFDTLAMETKKKEEIKKDL--KKG-YLLYGPPGTGKSTMIAAMANFLNYD 253 (504)
Q Consensus 206 ~~f~~~~~~~~~k~~i~~~l--~rg-~LL~GPpGtGKTsla~aiA~~l~~~ 253 (504)
-.|+.+++.+...+.+...+ |.| +|+.||.|+|||++..++.++++.+
T Consensus 235 l~l~~Lg~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~~L~~ln~~ 285 (500)
T COG2804 235 LDLEKLGMSPFQLARLLRLLNRPQGLILVTGPTGSGKTTTLYAALSELNTP 285 (500)
T ss_pred CCHHHhCCCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHHHHhcCC
Confidence 35899999999999998888 888 4668999999999999999988654
No 367
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.75 E-value=0.00091 Score=61.19 Aligned_cols=26 Identities=42% Similarity=0.667 Sum_probs=20.5
Q ss_pred ccccCCCCCcHHHHHHHHHHhcCCcEE
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLNYDVY 255 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~~~i~ 255 (504)
|.|+|+||||||||+++||.. |++++
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v 27 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVV 27 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence 578999999999999999998 77655
No 368
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.74 E-value=0.001 Score=63.01 Aligned_cols=34 Identities=35% Similarity=0.540 Sum_probs=26.7
Q ss_pred cccccCCCCCcHHHHHHHHHHhcCCcEEEEeccc
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTT 261 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~ 261 (504)
-|+++||+|||||.++-++|+.+|.+++.+|--.
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq 36 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQ 36 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGG
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEeccee
Confidence 3789999999999999999999999999887543
No 369
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.74 E-value=0.00081 Score=60.72 Aligned_cols=26 Identities=31% Similarity=0.522 Sum_probs=22.7
Q ss_pred ccCCCCCcHHHHHHHHHHhcCCcEEE
Q 037859 231 LYGPPGTGKSTMIAAMANFLNYDVYD 256 (504)
Q Consensus 231 L~GPpGtGKTsla~aiA~~l~~~i~~ 256 (504)
+.||||+|||++++.||..+|+..+.
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is 26 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHIS 26 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEE
T ss_pred CcCCCCCChHHHHHHHHHhcCcceec
Confidence 57999999999999999999876544
No 370
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.74 E-value=0.0012 Score=59.63 Aligned_cols=30 Identities=40% Similarity=0.543 Sum_probs=25.2
Q ss_pred ccccCCCCCcHHHHHHHHHHhc---CCcEEEEe
Q 037859 229 YLLYGPPGTGKSTMIAAMANFL---NYDVYDLE 258 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~ 258 (504)
++++|+||+|||++++.++..+ +.+.+.++
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~ 34 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLD 34 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 5789999999999999999998 65555553
No 371
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.73 E-value=0.0069 Score=65.22 Aligned_cols=23 Identities=43% Similarity=0.625 Sum_probs=20.2
Q ss_pred cccccCCCCCcHHHHHHHHHHhc
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFL 250 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l 250 (504)
-+.|+||+|+|||+++..||..+
T Consensus 352 vIaLVGPtGvGKTTtaakLAa~l 374 (559)
T PRK12727 352 VIALVGPTGAGKTTTIAKLAQRF 374 (559)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47789999999999999998754
No 372
>PRK13764 ATPase; Provisional
Probab=96.72 E-value=0.0011 Score=72.62 Aligned_cols=47 Identities=32% Similarity=0.579 Sum_probs=37.9
Q ss_pred CCccccccccChhHHHHHHHhhcccccccCCCCCcHHHHHHHHHHhcC
Q 037859 204 HPATFDTLAMETKKKEEIKKDLKKGYLLYGPPGTGKSTMIAAMANFLN 251 (504)
Q Consensus 204 ~p~~f~~~~~~~~~k~~i~~~l~rg~LL~GPpGtGKTsla~aiA~~l~ 251 (504)
.+.+++.+.+++..++.+... ++++|++||||+||||+++|++.++.
T Consensus 236 ~~~~Le~l~l~~~l~~~l~~~-~~~ILIsG~TGSGKTTll~AL~~~i~ 282 (602)
T PRK13764 236 VKLSLEDYNLSEKLKERLEER-AEGILIAGAPGAGKSTFAQALAEFYA 282 (602)
T ss_pred CCCCHHHhCCCHHHHHHHHhc-CCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345688888887666655433 67899999999999999999998875
No 373
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.72 E-value=0.0014 Score=65.00 Aligned_cols=52 Identities=31% Similarity=0.523 Sum_probs=40.4
Q ss_pred eeeecCCCccccccccChhHHHHHHHhhccc-ccccCCCCCcHHHHHHHHHHhcCC
Q 037859 198 SHVFFEHPATFDTLAMETKKKEEIKKDLKKG-YLLYGPPGTGKSTMIAAMANFLNY 252 (504)
Q Consensus 198 ~~~~~~~p~~f~~~~~~~~~k~~i~~~l~rg-~LL~GPpGtGKTsla~aiA~~l~~ 252 (504)
..+| ....+|+.+.+++-.++ +...++| +|+.||.|+|||+...||-+++|.
T Consensus 99 R~Ip-~~i~~~e~LglP~i~~~--~~~~~~GLILVTGpTGSGKSTTlAamId~iN~ 151 (353)
T COG2805 99 RLIP-SKIPTLEELGLPPIVRE--LAESPRGLILVTGPTGSGKSTTLAAMIDYINK 151 (353)
T ss_pred eccC-ccCCCHHHcCCCHHHHH--HHhCCCceEEEeCCCCCcHHHHHHHHHHHHhc
Confidence 3445 44557999999987666 3344889 566799999999999999999864
No 374
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.72 E-value=0.0017 Score=66.21 Aligned_cols=55 Identities=27% Similarity=0.438 Sum_probs=43.6
Q ss_pred cc-ccccChhHHHHHHHhh----------cccccccCCCCCcHHHHHHHHHHhc-CCcEEEEecccc
Q 037859 208 FD-TLAMETKKKEEIKKDL----------KKGYLLYGPPGTGKSTMIAAMANFL-NYDVYDLELTTV 262 (504)
Q Consensus 208 f~-~~~~~~~~k~~i~~~l----------~rg~LL~GPpGtGKTsla~aiA~~l-~~~i~~l~~~~~ 262 (504)
|+ .+-+-++..++|++++ ++-++|.||+|+|||++++.+-+.+ .+++|.+..+-+
T Consensus 59 f~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l~~~Pm 125 (358)
T PF08298_consen 59 FEDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTLKGCPM 125 (358)
T ss_pred ccccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEecCCcc
Confidence 44 5667778889999988 5668899999999999999998877 457777754443
No 375
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=96.72 E-value=0.0036 Score=61.62 Aligned_cols=25 Identities=32% Similarity=0.584 Sum_probs=22.6
Q ss_pred cccccCCCCCcHHHHHHHHHHhcCC
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFLNY 252 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l~~ 252 (504)
-+++.||+|||||+|++.+++.+..
T Consensus 18 r~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 18 RGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred EEEEECCCCCCHHHHHHHHHhcccc
Confidence 3899999999999999999998764
No 376
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.70 E-value=0.0012 Score=60.56 Aligned_cols=29 Identities=31% Similarity=0.584 Sum_probs=26.1
Q ss_pred ccccCCCCCcHHHHHHHHHHhcCCcEEEE
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLNYDVYDL 257 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~~~i~~l 257 (504)
+.++|+||+|||++++.+|..++++++..
T Consensus 3 I~i~G~~GSGKstia~~la~~lg~~~~~~ 31 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKLISA 31 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCceecH
Confidence 57899999999999999999999987653
No 377
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=96.70 E-value=0.0051 Score=59.23 Aligned_cols=62 Identities=24% Similarity=0.348 Sum_probs=38.8
Q ss_pred ccccccCCCCCcHHHHHHHHHH-----hcCCcE---------EEEeccccCCh--------------HHHHHHHHhccCC
Q 037859 227 KGYLLYGPPGTGKSTMIAAMAN-----FLNYDV---------YDLELTTVQDN--------------SELRSLLIDTSSK 278 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~-----~l~~~i---------~~l~~~~~~~~--------------~~l~~l~~~~~~~ 278 (504)
+-++|.||.|+|||++.+.+|. ..+..+ +.--...+... .++..++....++
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~vp~~~~~i~~~~~i~~~~~~~~~ls~g~s~f~~e~~~l~~~l~~~~~~ 110 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVALIALLAQIGSFVPASKAEIGVVDRIFTRIGASDDLAGGRSTFMVEMVETANILNNATER 110 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHhccCCeeccccceecceeeEeccCCchhhhccCcchHHHHHHHHHHHHHhCCCC
Confidence 4578999999999999999864 223221 11001111100 1355566666789
Q ss_pred eEEEEecccc
Q 037859 279 SILVIEDIDC 288 (504)
Q Consensus 279 ~Il~iDeiD~ 288 (504)
++++|||.-.
T Consensus 111 ~llllDEp~~ 120 (216)
T cd03284 111 SLVLLDEIGR 120 (216)
T ss_pred eEEEEecCCC
Confidence 9999999843
No 378
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=96.69 E-value=0.01 Score=54.42 Aligned_cols=24 Identities=25% Similarity=0.480 Sum_probs=18.8
Q ss_pred ccccccCCCCCcHHH-HHHHHHHhc
Q 037859 227 KGYLLYGPPGTGKST-MIAAMANFL 250 (504)
Q Consensus 227 rg~LL~GPpGtGKTs-la~aiA~~l 250 (504)
+.+++.||+|||||. ++..+...+
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~ 49 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEAL 49 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHh
Confidence 689999999999999 555555444
No 379
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.69 E-value=0.011 Score=62.83 Aligned_cols=34 Identities=35% Similarity=0.428 Sum_probs=26.3
Q ss_pred cccccCCCCCcHHHHHHHHHHhc-----CCcEEEEeccc
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFL-----NYDVYDLELTT 261 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l-----~~~i~~l~~~~ 261 (504)
-++|.||+|+|||+++..+|..+ +..+..+++..
T Consensus 223 ~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~ 261 (424)
T PRK05703 223 VVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDT 261 (424)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc
Confidence 47899999999999999988754 35566666544
No 380
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.68 E-value=0.0046 Score=63.01 Aligned_cols=65 Identities=15% Similarity=0.311 Sum_probs=41.3
Q ss_pred ccc--ccccCCCCCcHHHHHHHHHHhc---CCcEEEEecccc---------------------CChHHHHHHH---Hhcc
Q 037859 226 KKG--YLLYGPPGTGKSTMIAAMANFL---NYDVYDLELTTV---------------------QDNSELRSLL---IDTS 276 (504)
Q Consensus 226 ~rg--~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~---------------------~~~~~l~~l~---~~~~ 276 (504)
|+| +++|||||||||+|+-.++... +....+++...- .+.+++..++ ....
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~s~ 132 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVRSG 132 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHhcc
Confidence 455 7899999999999999876433 556666655321 1112222222 2224
Q ss_pred CCeEEEEecccccc
Q 037859 277 SKSILVIEDIDCSL 290 (504)
Q Consensus 277 ~~~Il~iDeiD~~~ 290 (504)
...+|+||-+-+++
T Consensus 133 ~~~lIVIDSvaal~ 146 (325)
T cd00983 133 AVDLIVVDSVAALV 146 (325)
T ss_pred CCCEEEEcchHhhc
Confidence 67899999998865
No 381
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.67 E-value=0.0012 Score=61.96 Aligned_cols=29 Identities=28% Similarity=0.442 Sum_probs=24.9
Q ss_pred cccccCCCCCcHHHHHHHHHHhcCCcEEE
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFLNYDVYD 256 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l~~~i~~ 256 (504)
-+.|.||+|+||||+++.||..++.+++.
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~~~~~~~ 32 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQREQTQLLV 32 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCeEEE
Confidence 47789999999999999999988766544
No 382
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.66 E-value=0.0047 Score=55.46 Aligned_cols=60 Identities=22% Similarity=0.281 Sum_probs=39.2
Q ss_pred ccccccCCCCCcHHHHHHHHHHhcCC-----------cEEEEeccccCChHHHHHHHHh---ccCCeEEEEeccccc
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANFLNY-----------DVYDLELTTVQDNSELRSLLID---TSSKSILVIEDIDCS 289 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~l~~-----------~i~~l~~~~~~~~~~l~~l~~~---~~~~~Il~iDeiD~~ 289 (504)
.-+.+.||+|+|||+|++++++.+.. .+.++. . -+..+.+++... ..+|.|+++||-..-
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~--~-lS~G~~~rv~laral~~~p~illlDEP~~~ 100 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFE--Q-LSGGEKMRLALAKLLLENPNLLLLDEPTNH 100 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEc--c-CCHHHHHHHHHHHHHhcCCCEEEEeCCccC
Confidence 44789999999999999999997632 111111 1 223334443322 258999999998764
No 383
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.66 E-value=0.0041 Score=64.24 Aligned_cols=35 Identities=23% Similarity=0.402 Sum_probs=27.6
Q ss_pred HHHHHHHhh---ccc--ccccCCCCCcHHHHHHHHHHhcC
Q 037859 217 KKEEIKKDL---KKG--YLLYGPPGTGKSTMIAAMANFLN 251 (504)
Q Consensus 217 ~k~~i~~~l---~rg--~LL~GPpGtGKTsla~aiA~~l~ 251 (504)
.-.++++.+ .+| .|+.||||||||+|++.+|+.+.
T Consensus 119 ~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~ 158 (380)
T PRK12608 119 LSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVA 158 (380)
T ss_pred hhHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 344566666 344 69999999999999999998773
No 384
>PRK14526 adenylate kinase; Provisional
Probab=96.65 E-value=0.0014 Score=62.98 Aligned_cols=28 Identities=39% Similarity=0.730 Sum_probs=24.6
Q ss_pred ccccCCCCCcHHHHHHHHHHhcCCcEEE
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLNYDVYD 256 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~~~i~~ 256 (504)
++|.||||+|||++++.+|..+++..+.
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~~~~is 30 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELNYYHIS 30 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceee
Confidence 6889999999999999999998876543
No 385
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.65 E-value=0.029 Score=57.04 Aligned_cols=98 Identities=14% Similarity=0.139 Sum_probs=53.0
Q ss_pred CCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccCCCceEE-EEecC-
Q 037859 277 SKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERII-VFTTN- 354 (504)
Q Consensus 277 ~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~~~~iv-I~tTN- 354 (504)
.|.++-||++.+++....-+.. ....-....-.....|++.+.|-.+-..+.+++ +.+|.
T Consensus 156 ~PVL~avD~~n~l~~~S~Y~~~------------------~~~~I~~~~L~l~~~f~~~~s~~~~~~nG~~v~~l~~t~~ 217 (309)
T PF10236_consen 156 PPVLVAVDGFNALFGPSAYRDP------------------DFKPIHPHDLTLVRLFLDLLSGKRDFKNGAVVTALAATSV 217 (309)
T ss_pred CceEEEehhhHHhhCCccccCC------------------CCccccHHHhhHHHHHHHHhcCccccCCCeEEEEEecccc
Confidence 4678889999998753222110 000011122234556666655544433443432 44442
Q ss_pred --CCC--CCChhhhcCCC------ce-------------eEEEecCCCHHHHHHHHHHhcC
Q 037859 355 --YVD--KLDPALIRRGR------MD-------------KHIEMSYCCFEAFKVLAKNYLD 392 (504)
Q Consensus 355 --~~e--~Ld~ALlRpGR------~d-------------~~I~~~~p~~e~~~~i~~~~l~ 392 (504)
.+. .++.+|....- |. ..|+++..+.++.+.+++.|..
T Consensus 218 ~~~~~~~~l~~~L~~~~~~~~~dPy~~~d~~~~~~l~~~~~i~v~~~s~~E~~~ll~yy~~ 278 (309)
T PF10236_consen 218 SNAPKSPTLPVALGGKEGFPHLDPYVKRDPRVAESLKGVKPIEVPRLSKEEARSLLEYYAD 278 (309)
T ss_pred ccccCCccchhhhccccCCCCCCCcccccHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHH
Confidence 222 56667665211 10 1678888899999999888864
No 386
>PRK06696 uridine kinase; Validated
Probab=96.65 E-value=0.0031 Score=60.97 Aligned_cols=36 Identities=17% Similarity=0.238 Sum_probs=29.6
Q ss_pred cccccCCCCCcHHHHHHHHHHhc---CCcEEEEeccccC
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFL---NYDVYDLELTTVQ 263 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~~ 263 (504)
-+.+.|+||+||||+|+.||..+ |.+++.+.+.++-
T Consensus 24 iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 24 RVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 36689999999999999999998 6677776666554
No 387
>PF06431 Polyoma_lg_T_C: Polyomavirus large T antigen C-terminus; InterPro: IPR010932 The group of polyomaviruses is formed by the homonymous murine virus (Py) as well as other representative members such as the simian virus 40 (SV40) and the human BK and JC viruses []. Their large T antigen (T-ag) protein binds to and activates DNA replication from the origin of DNA replication (ori). Insofar as is known, the T-ag binds to the origin first as a monomer to its pentanucleotide recognition element. The monomers are then thought to assemble into hexamers and double hexamers, which constitute the form that is active in initiation of DNA replication. When bound to the ori, T-ag double hexamers encircle DNA []. T-ag is a multidomain protein that contains an N-terminal J domain, which mediates protein interactions (see PDOC00553 from PROSITEDOC, IPR001623 from INTERPRO), a central origin-binding domain (OBD), and a C-terminal superfamily 3 helicase domain (see PDOC51206 from PROSITEDOC, IPR010932 from INTERPRO) []. This entry represents the helicase domain of LTag, which assembles into a hexameric structure containing a positively charged central channel that can bind both single- and double-stranded DNA []. ATP binding and hydrolysis trigger large conformational changes which are thought to be coupled to the melting of origin DNA and the unwinding of duplex DNA []. These conformational changes cause the angles and orientations between regions of a monomer to alter, creating what was described as an "iris"-like motion in the hexamer. In addition to this, six beta hairpins on the channel surface move longitudinally along the central channel, possibly serving as a motor for pulling DNA into the LTag double hexamer for unwinding.; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 2H1L_H 1SVO_A 1SVM_E 1SVL_B 1N25_A 4E2I_K.
Probab=96.64 E-value=0.0049 Score=62.76 Aligned_cols=121 Identities=21% Similarity=0.285 Sum_probs=69.0
Q ss_pred cccccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccCChHHHHHHHHhccCCeEEEEeccccccccccccccccccccc
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQDNSELRSLLIDTSSKSILVIEDIDCSLDLTGQREKKKEKDED 305 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~~l~~l~~~~~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~ 305 (504)
+|.+||-||-.|||||+|.|+-+.+|-....+++.. ++|.--+.-+-..-.+++||+-- +...
T Consensus 155 kRy~lFkGPvNsGKTTlAAAlLdL~gG~~LNvN~p~----dkl~FELG~AiDQfmVvFEDVKG------q~~~------- 217 (417)
T PF06431_consen 155 KRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPP----DKLNFELGCAIDQFMVVFEDVKG------QPSD------- 217 (417)
T ss_dssp B-EEEEE-STTSSHHHHHHHHHHHH-EEEE-TSS-T----TTHHHHHCCCTT-SEEEEEEE--------SSTT-------
T ss_pred ceeEEEecCcCCchHHHHHHHHHhcCCceeecCCCh----hhcchhhheeeceEEEEEEecCC------CcCC-------
Confidence 788999999999999999999999886666555543 44555555666788999999843 1100
Q ss_pred ccccCcccccccccCCCcchhhHHHHHhhhhcCcccc-----CCCce-----EEEEecCCCCCCChhhhcCCCceeEEEe
Q 037859 306 KEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSA-----SGEER-----IIVFTTNYVDKLDPALIRRGRMDKHIEM 375 (504)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~-----~~~~~-----ivI~tTN~~e~Ld~ALlRpGR~d~~I~~ 375 (504)
...-..+.+-..+..|-..|||.... ....+ --|.|+|.. .||..+.- ||-..+.|
T Consensus 218 -----------~~~Lp~G~G~~NLDNLRD~LDG~V~VNLErKH~NK~sQiFPPgIvTmNeY-~iP~Tv~v--Rf~~~~~F 283 (417)
T PF06431_consen 218 -----------NKDLPPGQGMNNLDNLRDYLDGAVKVNLERKHQNKRSQIFPPGIVTMNEY-KIPQTVKV--RFCKVLDF 283 (417)
T ss_dssp -----------TTT----SHHHHHHTTHHHHH-SS-EEEECSSSEEEEE----EEEEESS--B--HHHHT--TEEEEEE-
T ss_pred -----------CCCCCCCCCcccchhhhhhccCceeechhhhhcccccccCCCceEeeccc-cCCcceee--eeEeeEec
Confidence 00001122344567777888875311 11111 257888864 57888888 99888887
Q ss_pred cC
Q 037859 376 SY 377 (504)
Q Consensus 376 ~~ 377 (504)
..
T Consensus 284 ~~ 285 (417)
T PF06431_consen 284 RP 285 (417)
T ss_dssp --
T ss_pred cc
Confidence 53
No 388
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.64 E-value=0.0014 Score=61.24 Aligned_cols=26 Identities=42% Similarity=0.721 Sum_probs=22.5
Q ss_pred cccccCCCCCcHHHHHHHHHHhcCCc
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFLNYD 253 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l~~~ 253 (504)
-+++.||||+||||+|+.||+.++.+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~ 27 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLP 27 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 36889999999999999999995543
No 389
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.62 E-value=0.0013 Score=66.26 Aligned_cols=29 Identities=34% Similarity=0.255 Sum_probs=24.2
Q ss_pred ccccccCCCCCcHHHHHHHHHHhc-CCcEE
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANFL-NYDVY 255 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~l-~~~i~ 255 (504)
+-++|.|||||||||+|+.++..+ +...+
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~~~~~l 32 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNPKAVNV 32 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCCCCEEE
Confidence 347889999999999999999998 54433
No 390
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.62 E-value=0.0049 Score=57.45 Aligned_cols=63 Identities=21% Similarity=0.271 Sum_probs=37.7
Q ss_pred cccccCCCCCcHHHHHHHHHHhcCCc--EEEEe---cccc-----CChHHHHHHHHh---ccCCeEEEEecccccc
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFLNYD--VYDLE---LTTV-----QDNSELRSLLID---TSSKSILVIEDIDCSL 290 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l~~~--i~~l~---~~~~-----~~~~~l~~l~~~---~~~~~Il~iDeiD~~~ 290 (504)
-+.|.||.|+|||||++.|++.+... -+.++ ...+ -+..+-+++-.. ...|.++++||--.-+
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPts~L 102 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSAYL 102 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccC
Confidence 47799999999999999999876321 11111 1100 122222222221 2478999999986643
No 391
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.62 E-value=0.0022 Score=63.87 Aligned_cols=61 Identities=23% Similarity=0.405 Sum_probs=33.3
Q ss_pred ccccCCCCCcHHHHHHHHHHhc---CCcEEEEecccc----------CChHHHHHHHHhc-----cCCeEEEEeccccc
Q 037859 229 YLLYGPPGTGKSTMIAAMANFL---NYDVYDLELTTV----------QDNSELRSLLIDT-----SSKSILVIEDIDCS 289 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~----------~~~~~l~~l~~~~-----~~~~Il~iDeiD~~ 289 (504)
++|+|.||+|||++|+.|+.++ +..+..++-..+ .....+|..+... ....||++|+..-+
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls~~~iVI~Dd~nYi 82 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALSKDTIVILDDNNYI 82 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHTT-SEEEE-S---S
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhccCeEEEEeCCchH
Confidence 6789999999999999999875 556665553222 1123344333322 45689999988753
No 392
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.62 E-value=0.0087 Score=56.07 Aligned_cols=60 Identities=17% Similarity=0.355 Sum_probs=37.9
Q ss_pred ccccCCCCCcHHHHHHHHHH-----hcCCcE---------E-----EEeccc-cC--------ChHHHHHHHHhccCCeE
Q 037859 229 YLLYGPPGTGKSTMIAAMAN-----FLNYDV---------Y-----DLELTT-VQ--------DNSELRSLLIDTSSKSI 280 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~-----~l~~~i---------~-----~l~~~~-~~--------~~~~l~~l~~~~~~~~I 280 (504)
++|+||.|.|||++.+.++- ..|..+ + .+.... +. .-.++..++..+..|.+
T Consensus 2 ~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~~l 81 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNATENSL 81 (185)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhCCCCeE
Confidence 67999999999999999982 223221 1 111111 00 11234555555678999
Q ss_pred EEEecccc
Q 037859 281 LVIEDIDC 288 (504)
Q Consensus 281 l~iDeiD~ 288 (504)
+++||.-.
T Consensus 82 lllDEp~~ 89 (185)
T smart00534 82 VLLDELGR 89 (185)
T ss_pred EEEecCCC
Confidence 99999966
No 393
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.62 E-value=0.0053 Score=63.95 Aligned_cols=61 Identities=21% Similarity=0.339 Sum_probs=40.1
Q ss_pred ccccCCCCCcHHHHHHHHHHhc---CCcEEEEeccccC-----------------------ChHHHHHHHHhccCCeEEE
Q 037859 229 YLLYGPPGTGKSTMIAAMANFL---NYDVYDLELTTVQ-----------------------DNSELRSLLIDTSSKSILV 282 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~~-----------------------~~~~l~~l~~~~~~~~Il~ 282 (504)
+||+||||+|||+|+..+|..+ +.++++++...-. .-..+.+.+ ....+.+|+
T Consensus 85 vLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i-~~~~~~lVV 163 (372)
T cd01121 85 ILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASI-EELKPDLVI 163 (372)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHH-HhcCCcEEE
Confidence 7899999999999999998765 3466666543210 001122222 123688999
Q ss_pred Eecccccc
Q 037859 283 IEDIDCSL 290 (504)
Q Consensus 283 iDeiD~~~ 290 (504)
||+|..++
T Consensus 164 IDSIq~l~ 171 (372)
T cd01121 164 IDSIQTVY 171 (372)
T ss_pred EcchHHhh
Confidence 99998864
No 394
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.61 E-value=0.0055 Score=65.49 Aligned_cols=62 Identities=26% Similarity=0.382 Sum_probs=40.7
Q ss_pred ccccCCCCCcHHHHHHHHHHhc---CCcEEEEeccccC--------------------ChHHHHHHHHh--ccCCeEEEE
Q 037859 229 YLLYGPPGTGKSTMIAAMANFL---NYDVYDLELTTVQ--------------------DNSELRSLLID--TSSKSILVI 283 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~~--------------------~~~~l~~l~~~--~~~~~Il~i 283 (504)
+||+||||+|||+|+..+|... +.++++++...-. ....+..++.. ...+.+|+|
T Consensus 83 ~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~~~~lVVI 162 (446)
T PRK11823 83 VLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEEKPDLVVI 162 (446)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhhCCCEEEE
Confidence 7899999999999999998765 5677766653210 00111222221 136789999
Q ss_pred ecccccc
Q 037859 284 EDIDCSL 290 (504)
Q Consensus 284 DeiD~~~ 290 (504)
|.|..+.
T Consensus 163 DSIq~l~ 169 (446)
T PRK11823 163 DSIQTMY 169 (446)
T ss_pred echhhhc
Confidence 9998764
No 395
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.59 E-value=0.005 Score=58.76 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=19.5
Q ss_pred ccccccCCCCCcHHHHHHHHHH
Q 037859 227 KGYLLYGPPGTGKSTMIAAMAN 248 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~ 248 (504)
+-++|.||.|+|||++.+.++.
T Consensus 30 ~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 30 RFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999873
No 396
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.58 E-value=0.012 Score=59.79 Aligned_cols=28 Identities=32% Similarity=0.380 Sum_probs=23.3
Q ss_pred cccccccCCCCCcHHHHHHHHHHhcCCc
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFLNYD 253 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l~~~ 253 (504)
+..+-|+||=|+|||++++.+-.++...
T Consensus 20 ~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 20 PFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 4567899999999999999998777443
No 397
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.58 E-value=0.0017 Score=63.88 Aligned_cols=31 Identities=45% Similarity=0.559 Sum_probs=25.5
Q ss_pred ccccCCCCCcHHHHHHHHHHhc---CCcEEEEec
Q 037859 229 YLLYGPPGTGKSTMIAAMANFL---NYDVYDLEL 259 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~ 259 (504)
++|+|+||+|||++|+++|.++ +.+++.++.
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~ 35 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGT 35 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEcc
Confidence 5789999999999999999987 456665543
No 398
>PRK10646 ADP-binding protein; Provisional
Probab=96.57 E-value=0.0094 Score=54.03 Aligned_cols=60 Identities=28% Similarity=0.409 Sum_probs=41.1
Q ss_pred ccccCCCCCcHHHHHHHHHHhcCC--------------------cEEEEeccccCChHHHHHH-HHh-ccCCeEEEEecc
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLNY--------------------DVYDLELTTVQDNSELRSL-LID-TSSKSILVIEDI 286 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~~--------------------~i~~l~~~~~~~~~~l~~l-~~~-~~~~~Il~iDei 286 (504)
++|.|+=|+|||++++++|+.+|. ++|-+|+--+.+..++..+ |.+ .....|++||=.
T Consensus 31 i~L~GdLGaGKTtf~rgl~~~Lg~~~~V~SPTFtlv~~Y~~~~~~l~H~DlYRL~~~~el~~lG~~e~~~~~~i~~IEW~ 110 (153)
T PRK10646 31 IYLYGDLGAGKTTFSRGFLQALGHQGNVKSPTYTLVEPYTLDNLMVYHFDLYRLADPEELEFMGIRDYFANDAICLVEWP 110 (153)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCCCCCCCCEeeEEEeeCCCCCEEEEeeccCCCHHHHHHcchHHhhcCCCEEEEECC
Confidence 789999999999999999998864 3455565555555554433 222 234678888754
Q ss_pred cc
Q 037859 287 DC 288 (504)
Q Consensus 287 D~ 288 (504)
|.
T Consensus 111 e~ 112 (153)
T PRK10646 111 QQ 112 (153)
T ss_pred cc
Confidence 44
No 399
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.56 E-value=0.0021 Score=59.84 Aligned_cols=31 Identities=32% Similarity=0.303 Sum_probs=23.4
Q ss_pred ccccCCCCCcHHHHHHHHHHhc---CCcEEEEec
Q 037859 229 YLLYGPPGTGKSTMIAAMANFL---NYDVYDLEL 259 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~ 259 (504)
+|++||||||||+++..++.+. |.++.++++
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~ 35 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTL 35 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 6899999999999998876543 555555543
No 400
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.56 E-value=0.0031 Score=65.55 Aligned_cols=42 Identities=24% Similarity=0.399 Sum_probs=34.3
Q ss_pred cccccccChhHHHHHHHhhccc-ccccCCCCCcHHHHHHHHHHhc
Q 037859 207 TFDTLAMETKKKEEIKKDLKKG-YLLYGPPGTGKSTMIAAMANFL 250 (504)
Q Consensus 207 ~f~~~~~~~~~k~~i~~~l~rg-~LL~GPpGtGKTsla~aiA~~l 250 (504)
+++.+.+++...+.++. ++| +|++||+|+||||++++++.++
T Consensus 131 ~l~~lgl~~~~~~~l~~--~~GlilI~G~TGSGKTT~l~al~~~i 173 (372)
T TIGR02525 131 DLKQMGIEPDLFNSLLP--AAGLGLICGETGSGKSTLAASIYQHC 173 (372)
T ss_pred CHHHcCCCHHHHHHHHh--cCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 68888888877666553 455 6789999999999999999877
No 401
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=96.55 E-value=0.0095 Score=69.09 Aligned_cols=79 Identities=22% Similarity=0.343 Sum_probs=50.7
Q ss_pred cccChhHHHHHHHhhc-c-cccccCCCCCcHHHHHHHHHHh---cCCcEEEEecccc---------C-ChHHHHHHHHh-
Q 037859 211 LAMETKKKEEIKKDLK-K-GYLLYGPPGTGKSTMIAAMANF---LNYDVYDLELTTV---------Q-DNSELRSLLID- 274 (504)
Q Consensus 211 ~~~~~~~k~~i~~~l~-r-g~LL~GPpGtGKTsla~aiA~~---l~~~i~~l~~~~~---------~-~~~~l~~l~~~- 274 (504)
+.+.+++++.+...+. + -++|.|+||||||++.+++... .|+.++.+-.+.. + ....+.+++..
T Consensus 345 ~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~ApTGkAA~~L~e~tGi~a~TI~sll~~~ 424 (988)
T PRK13889 345 LVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGIAAENLEGGSGIASRTIASLEHGW 424 (988)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEecCcHHHHHHHhhccCcchhhHHHHHhhh
Confidence 3478888888776662 3 3678999999999998877554 4777776644432 0 11223333321
Q ss_pred ------ccCCeEEEEeccccc
Q 037859 275 ------TSSKSILVIEDIDCS 289 (504)
Q Consensus 275 ------~~~~~Il~iDeiD~~ 289 (504)
.....||||||+=.+
T Consensus 425 ~~~~~~l~~~~vlIVDEASMv 445 (988)
T PRK13889 425 GQGRDLLTSRDVLVIDEAGMV 445 (988)
T ss_pred cccccccccCcEEEEECcccC
Confidence 124579999998653
No 402
>PRK10436 hypothetical protein; Provisional
Probab=96.55 E-value=0.015 Score=62.20 Aligned_cols=82 Identities=21% Similarity=0.456 Sum_probs=54.2
Q ss_pred ccccccccChhHHHHHHHhh--ccc-ccccCCCCCcHHHHHHHHHHhcC---CcEEEEe------cccc-----C--ChH
Q 037859 206 ATFDTLAMETKKKEEIKKDL--KKG-YLLYGPPGTGKSTMIAAMANFLN---YDVYDLE------LTTV-----Q--DNS 266 (504)
Q Consensus 206 ~~f~~~~~~~~~k~~i~~~l--~rg-~LL~GPpGtGKTsla~aiA~~l~---~~i~~l~------~~~~-----~--~~~ 266 (504)
.+|+.+++.+...+.+...+ ++| +|+.||+|+||||+..++..+++ .+++.++ +..+ . ...
T Consensus 195 ~~L~~LG~~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPvE~~l~gi~Q~~v~~~~g~ 274 (462)
T PRK10436 195 LDLETLGMTPAQLAQFRQALQQPQGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEIPLAGINQTQIHPKAGL 274 (462)
T ss_pred CCHHHcCcCHHHHHHHHHHHHhcCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCccccCCCcceEeeCCccCc
Confidence 47899999998877777766 677 67889999999999988877764 3344432 1111 1 111
Q ss_pred HHHHHHHhc--cCCeEEEEeccc
Q 037859 267 ELRSLLIDT--SSKSILVIEDID 287 (504)
Q Consensus 267 ~l~~l~~~~--~~~~Il~iDeiD 287 (504)
.+...+... ..|-||+|.||-
T Consensus 275 ~f~~~lr~~LR~dPDvI~vGEIR 297 (462)
T PRK10436 275 TFQRVLRALLRQDPDVIMVGEIR 297 (462)
T ss_pred CHHHHHHHHhcCCCCEEEECCCC
Confidence 233333322 478999999884
No 403
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=96.53 E-value=0.0054 Score=63.02 Aligned_cols=22 Identities=36% Similarity=0.700 Sum_probs=19.8
Q ss_pred cccccccCCCCCcHHHHHHHHH
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMA 247 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA 247 (504)
|||++|||.-|||||+|---.-
T Consensus 114 PkGlYlYG~VGcGKTmLMDlFy 135 (467)
T KOG2383|consen 114 PKGLYLYGSVGCGKTMLMDLFY 135 (467)
T ss_pred CceEEEecccCcchhHHHHHHh
Confidence 7999999999999999977654
No 404
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=96.53 E-value=0.0016 Score=69.89 Aligned_cols=61 Identities=23% Similarity=0.347 Sum_probs=39.4
Q ss_pred ccccCCCCCcHHHHHHHHHHhcCCcEEEEecc--ccC------ChHHHHHHHHh-----ccCCeEEEEeccccc
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLNYDVYDLELT--TVQ------DNSELRSLLID-----TSSKSILVIEDIDCS 289 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~--~~~------~~~~l~~l~~~-----~~~~~Il~iDeiD~~ 289 (504)
+||+|.||||||-+.+.+++-...-++.--.+ +++ .+.--+..-.+ ...+.|-+|||+|.+
T Consensus 485 vLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGASavGLTa~v~KdPvtrEWTLEaGALVLADkGvClIDEFDKM 558 (854)
T KOG0477|consen 485 VLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGASAVGLTAYVRKDPVTREWTLEAGALVLADKGVCLIDEFDKM 558 (854)
T ss_pred EEEecCCCccHHHHHHHHHhcCcceeEeccCCccccceeEEEeeCCccceeeeccCeEEEccCceEEeehhhhh
Confidence 89999999999999999998776666543111 110 00000111111 246889999999996
No 405
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.52 E-value=0.0083 Score=68.18 Aligned_cols=79 Identities=27% Similarity=0.350 Sum_probs=50.4
Q ss_pred cccChhHHHHHHHhhc--ccccccCCCCCcHHHHHHHHHHhc---CCcEEEEeccccC----------ChHHHHHHHHh-
Q 037859 211 LAMETKKKEEIKKDLK--KGYLLYGPPGTGKSTMIAAMANFL---NYDVYDLELTTVQ----------DNSELRSLLID- 274 (504)
Q Consensus 211 ~~~~~~~k~~i~~~l~--rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~~----------~~~~l~~l~~~- 274 (504)
..+.+++++.+...+. +-++|.|+||||||++++++...+ |+.+..+-.+... ....+.+++..
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~~~~g~~a~Ti~~~~~~~ 430 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQAESGIESRTLASLEYAW 430 (744)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHhccCCceeeHHHHHhhh
Confidence 4577888887766653 446889999999999999986544 6666665443320 00112222211
Q ss_pred ------ccCCeEEEEeccccc
Q 037859 275 ------TSSKSILVIEDIDCS 289 (504)
Q Consensus 275 ------~~~~~Il~iDeiD~~ 289 (504)
.....+|+|||+-.+
T Consensus 431 ~~~~~~~~~~~llIvDEasMv 451 (744)
T TIGR02768 431 ANGRDLLSDKDVLVIDEAGMV 451 (744)
T ss_pred ccCcccCCCCcEEEEECcccC
Confidence 124689999998653
No 406
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.51 E-value=0.0032 Score=63.69 Aligned_cols=38 Identities=24% Similarity=0.520 Sum_probs=28.6
Q ss_pred cChhHHHHHHHhh--cccccccCCCCCcHHHHHHHHHHhc
Q 037859 213 METKKKEEIKKDL--KKGYLLYGPPGTGKSTMIAAMANFL 250 (504)
Q Consensus 213 ~~~~~k~~i~~~l--~rg~LL~GPpGtGKTsla~aiA~~l 250 (504)
+.++..+.+...+ ++++|+.||+|+|||++++++++++
T Consensus 117 ~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i 156 (299)
T TIGR02782 117 MTAAQRDVLREAVLARKNILVVGGTGSGKTTLANALLAEI 156 (299)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3444444444444 6779999999999999999999876
No 407
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.50 E-value=0.0051 Score=61.17 Aligned_cols=62 Identities=23% Similarity=0.460 Sum_probs=46.3
Q ss_pred ccc-ccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccCCh----HHHHHHHHhc---cCCeEEEEeccc
Q 037859 226 KKG-YLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQDN----SELRSLLIDT---SSKSILVIEDID 287 (504)
Q Consensus 226 ~rg-~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~~----~~l~~l~~~~---~~~~Il~iDeiD 287 (504)
++| .||.|.+|+||+++++-.|.-.++.++.+..+.--+- ++|+.++..+ ..+++++|+|-+
T Consensus 30 ~~Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~~y~~~~f~~dLk~~~~~ag~~~~~~vfll~d~q 99 (268)
T PF12780_consen 30 PRGHALLVGVGGSGRQSLARLAAFICGYEVFQIEITKGYSIKDFKEDLKKALQKAGIKGKPTVFLLTDSQ 99 (268)
T ss_dssp TTEEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTSTTTHHHHHHHHHHHHHHHHHCS-S-EEEEEECCC
T ss_pred CCCCeEEecCCCccHHHHHHHHHHHhccceEEEEeeCCcCHHHHHHHHHHHHHHHhccCCCeEEEecCcc
Confidence 556 8899999999999999888888999999887653222 4566666655 368899998865
No 408
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.48 E-value=0.0084 Score=56.89 Aligned_cols=21 Identities=19% Similarity=0.506 Sum_probs=19.5
Q ss_pred ccccccCCCCCcHHHHHHHHH
Q 037859 227 KGYLLYGPPGTGKSTMIAAMA 247 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA 247 (504)
+-++|.||.|+|||++.+.++
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 459999999999999999988
No 409
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=96.47 E-value=0.015 Score=64.09 Aligned_cols=46 Identities=30% Similarity=0.536 Sum_probs=38.8
Q ss_pred ccccccccChhHHHHHHHhh--ccc-ccccCCCCCcHHHHHHHHHHhcC
Q 037859 206 ATFDTLAMETKKKEEIKKDL--KKG-YLLYGPPGTGKSTMIAAMANFLN 251 (504)
Q Consensus 206 ~~f~~~~~~~~~k~~i~~~l--~rg-~LL~GPpGtGKTsla~aiA~~l~ 251 (504)
.+++.+++.++..+.+...+ ++| +|++||+|+|||++..++.++++
T Consensus 293 ~~l~~lg~~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl~a~l~~~~ 341 (564)
T TIGR02538 293 LDIDKLGFEPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSLYTALNILN 341 (564)
T ss_pred CCHHHcCCCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHhhC
Confidence 46899999998888887766 667 57899999999999998888775
No 410
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.47 E-value=0.0056 Score=63.80 Aligned_cols=26 Identities=31% Similarity=0.622 Sum_probs=22.8
Q ss_pred ccc--ccccCCCCCcHHHHHHHHHHhcC
Q 037859 226 KKG--YLLYGPPGTGKSTMIAAMANFLN 251 (504)
Q Consensus 226 ~rg--~LL~GPpGtGKTsla~aiA~~l~ 251 (504)
++| +++.||||||||++++.+++.+.
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhhc
Confidence 445 89999999999999999999764
No 411
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=96.45 E-value=0.04 Score=53.71 Aligned_cols=132 Identities=20% Similarity=0.226 Sum_probs=71.3
Q ss_pred ccc-ccccCCCCCcHHHHHHHHHHhcCCc-E--EEEeccccCCh--------------------------HHHHHHHHhc
Q 037859 226 KKG-YLLYGPPGTGKSTMIAAMANFLNYD-V--YDLELTTVQDN--------------------------SELRSLLIDT 275 (504)
Q Consensus 226 ~rg-~LL~GPpGtGKTsla~aiA~~l~~~-i--~~l~~~~~~~~--------------------------~~l~~l~~~~ 275 (504)
.+| +.++|+-|+|||.+++|+...++-+ + +.++-..+... ..|..++.+-
T Consensus 50 ~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g 129 (269)
T COG3267 50 GQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKG 129 (269)
T ss_pred CCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhC
Confidence 455 4589999999999999888777543 2 22222222111 1122333333
Q ss_pred cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccCCCceEEEEecCC
Q 037859 276 SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERIIVFTTNY 355 (504)
Q Consensus 276 ~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~~~~ivI~tTN~ 355 (504)
..|.++++||++.+-. ..-..+--|.|.-++.. ....+++|+=..-
T Consensus 130 ~r~v~l~vdEah~L~~--------------------------------~~le~Lrll~nl~~~~~--~~l~ivL~Gqp~L 175 (269)
T COG3267 130 KRPVVLMVDEAHDLND--------------------------------SALEALRLLTNLEEDSS--KLLSIVLIGQPKL 175 (269)
T ss_pred CCCeEEeehhHhhhCh--------------------------------hHHHHHHHHHhhccccc--CceeeeecCCccc
Confidence 5678999999987521 01112222333222221 1122344442211
Q ss_pred CC--CCC--hhhhcCCCceeEEEecCCCHHHHHHHHHHhcCc
Q 037859 356 VD--KLD--PALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDI 393 (504)
Q Consensus 356 ~e--~Ld--~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~ 393 (504)
-. +++ ..+.+ |++..|++++.+.++-...++..|+.
T Consensus 176 ~~~lr~~~l~e~~~--R~~ir~~l~P~~~~~t~~yl~~~Le~ 215 (269)
T COG3267 176 RPRLRLPVLRELEQ--RIDIRIELPPLTEAETGLYLRHRLEG 215 (269)
T ss_pred chhhchHHHHhhhh--eEEEEEecCCcChHHHHHHHHHHHhc
Confidence 00 111 23445 89888999999998777777777653
No 412
>PHA00350 putative assembly protein
Probab=96.45 E-value=0.01 Score=62.06 Aligned_cols=62 Identities=16% Similarity=0.164 Sum_probs=38.2
Q ss_pred ccccCCCCCcHHHHHHH--H--HHhcCCcEEEEeccccCChHHHHH---------------------------HHHhccC
Q 037859 229 YLLYGPPGTGKSTMIAA--M--ANFLNYDVYDLELTTVQDNSELRS---------------------------LLIDTSS 277 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~a--i--A~~l~~~i~~l~~~~~~~~~~l~~---------------------------l~~~~~~ 277 (504)
+|++|+||+|||+-+-. | |-.-|+.++. ++..+.- +.+.. .+.-.+.
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~palk~GR~V~T-NI~Gl~l-e~i~~~~~~~p~~~~li~i~~~~~~~~~~~~~~~~w~p~ 81 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPALKDGRKVIT-NIPGLNL-DVFEKVFGEFPSTARLIRIVDRNLEGFESMNRPFSWRPR 81 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHHHCCCEEEE-CCCCCCH-HHHHhhcccCcccceeEEeccccccchhhhccccccCCC
Confidence 67899999999997765 3 3334666553 4443221 11111 1111346
Q ss_pred CeEEEEecccccccc
Q 037859 278 KSILVIEDIDCSLDL 292 (504)
Q Consensus 278 ~~Il~iDeiD~~~~~ 292 (504)
.++|||||+..+++.
T Consensus 82 gaLIViDEaq~~~p~ 96 (399)
T PHA00350 82 GALYVIDEAQMIFPK 96 (399)
T ss_pred CCEEEEECchhhcCC
Confidence 789999999998753
No 413
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.45 E-value=0.0023 Score=60.75 Aligned_cols=28 Identities=25% Similarity=0.405 Sum_probs=24.6
Q ss_pred ccccccCCCCCcHHHHHHHHHHhcCCcE
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANFLNYDV 254 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~l~~~i 254 (504)
+-+++.|+||+|||++++.+|..++...
T Consensus 4 ~~i~i~G~~G~GKst~a~~l~~~~~~~~ 31 (197)
T PRK12339 4 TIHFIGGIPGVGKTSISGYIARHRAIDI 31 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 4478899999999999999999988654
No 414
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=96.45 E-value=0.0066 Score=67.72 Aligned_cols=50 Identities=26% Similarity=0.437 Sum_probs=37.9
Q ss_pred cccChhHHHHHHHhhc--ccccccCCCCCcHHHHHHHHHHhc---CCcEEEEecc
Q 037859 211 LAMETKKKEEIKKDLK--KGYLLYGPPGTGKSTMIAAMANFL---NYDVYDLELT 260 (504)
Q Consensus 211 ~~~~~~~k~~i~~~l~--rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~ 260 (504)
-.+++.+++.+...+. ..+|++||||||||+++.++...+ |..+..+..+
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g~~VLv~a~s 210 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKRGLRVLVTAPS 210 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCc
Confidence 3578888888887773 457899999999999988887664 6666665433
No 415
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.43 E-value=0.0098 Score=56.49 Aligned_cols=21 Identities=33% Similarity=0.517 Sum_probs=19.4
Q ss_pred ccccccCCCCCcHHHHHHHHH
Q 037859 227 KGYLLYGPPGTGKSTMIAAMA 247 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA 247 (504)
+-++|.||.|+|||++.+.|+
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~ 50 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIG 50 (202)
T ss_pred eEEEEECCCCCccHHHHHHHH
Confidence 358999999999999999998
No 416
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.38 E-value=0.0026 Score=58.94 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=22.2
Q ss_pred ccccccCCCCCcHHHHHHHHHHhcC
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANFLN 251 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~l~ 251 (504)
.-++|.|+||+|||++++++++.+.
T Consensus 8 ~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 8 YVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3477899999999999999999885
No 417
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.37 E-value=0.019 Score=67.91 Aligned_cols=149 Identities=14% Similarity=0.158 Sum_probs=91.8
Q ss_pred cccccChhHHHHHHHhh------cccccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccCChHHHH-------------
Q 037859 209 DTLAMETKKKEEIKKDL------KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQDNSELR------------- 269 (504)
Q Consensus 209 ~~~~~~~~~k~~i~~~l------~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~~l~------------- 269 (504)
+.+++.|-+.+.++.-+ .-.+|+-||..+|||+++..+|...|..++.++-..-.+-.+..
T Consensus 865 ~hyIiTPfVqkn~ln~~Ra~s~~~fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsF 944 (4600)
T COG5271 865 EHYIITPFVQKNYLNTMRAASLSNFPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSF 944 (4600)
T ss_pred ceeEecHHHHHHHHHHHHHHhhcCCcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceee
Confidence 45677776666555555 34489999999999999999999999999999765432222111
Q ss_pred --HHHH-hccCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccc-----
Q 037859 270 --SLLI-DTSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWS----- 341 (504)
Q Consensus 270 --~l~~-~~~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~----- 341 (504)
..+. ...+.--|++||+.-.. ..--..++.||.-=..+.-
T Consensus 945 kEGvLVeAlR~GyWIVLDELNLAp--------------------------------TDVLEaLNRLLDDNRelfIPETqe 992 (4600)
T COG5271 945 KEGVLVEALRRGYWIVLDELNLAP--------------------------------TDVLEALNRLLDDNRELFIPETQE 992 (4600)
T ss_pred ehhHHHHHHhcCcEEEeeccccCc--------------------------------HHHHHHHHHhhccccceecCCcce
Confidence 1222 22455678999997631 1112233444321001100
Q ss_pred --cCCCceEEEEecCCCC------CCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcC
Q 037859 342 --ASGEERIIVFTTNYVD------KLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLD 392 (504)
Q Consensus 342 --~~~~~~ivI~tTN~~e------~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~ 392 (504)
...++..+++|-|+|. .|..|++. || ..++|+.-..++...|+..-..
T Consensus 993 vV~PHp~F~lFATQNppg~YgGRK~LSrAFRN--RF-lE~hFddipedEle~ILh~rc~ 1048 (4600)
T COG5271 993 VVVPHPNFRLFATQNPPGGYGGRKGLSRAFRN--RF-LEMHFDDIPEDELEEILHGRCE 1048 (4600)
T ss_pred eeccCCCeeEEeecCCCccccchHHHHHHHHh--hh-HhhhcccCcHHHHHHHHhccCc
Confidence 1123345566667664 47789988 99 6788877777777777765543
No 418
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=96.34 E-value=0.047 Score=56.00 Aligned_cols=35 Identities=26% Similarity=0.345 Sum_probs=30.1
Q ss_pred cccccccCCCCCcHHHHHHHHHHhcCCcEEEEecc
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELT 260 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~ 260 (504)
|..+.|||-.|||||.+++.+-+.++.+-..+++-
T Consensus 30 PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ 64 (438)
T KOG2543|consen 30 PSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCV 64 (438)
T ss_pred ceeEEEeccCCCchhHHHHHHHhhcCCcceeeehH
Confidence 66679999999999999999999998887766553
No 419
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=96.33 E-value=0.015 Score=56.82 Aligned_cols=62 Identities=19% Similarity=0.424 Sum_probs=39.0
Q ss_pred ccccccCCCCCcHHHHHHHHHHh-----cCCc---------EE---EEecc---ccC--------ChHHHHHHHHhccCC
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANF-----LNYD---------VY---DLELT---TVQ--------DNSELRSLLIDTSSK 278 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~-----l~~~---------i~---~l~~~---~~~--------~~~~l~~l~~~~~~~ 278 (504)
+.+++.||...|||++.+.+|-. +|.. ++ ..... ++. .-.++..++..+.++
T Consensus 44 ~~~iiTGpN~sGKSt~lk~i~~~~ilaq~G~~VPA~~~~i~~~d~I~t~~~~~d~~~~~~S~F~~E~~~~~~il~~~~~~ 123 (235)
T PF00488_consen 44 RIIIITGPNMSGKSTFLKQIGLIVILAQIGCFVPAESAEIPIFDRIFTRIGDDDSIESGLSTFMAEMKRLSSILRNATEK 123 (235)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHHHHHTTT--BSSSEEEEE--SEEEEEES---SSTTSSSHHHHHHHHHHHHHHH--TT
T ss_pred eEEEEeCCCccchhhHHHHHHHHhhhhhcCceeeecccccccccEEEeecccccccccccccHHHhHHHHHhhhhhcccc
Confidence 57899999999999999998743 2321 11 11111 111 113567777778899
Q ss_pred eEEEEecccc
Q 037859 279 SILVIEDIDC 288 (504)
Q Consensus 279 ~Il~iDeiD~ 288 (504)
++|+|||+=.
T Consensus 124 sLvliDE~g~ 133 (235)
T PF00488_consen 124 SLVLIDELGR 133 (235)
T ss_dssp EEEEEESTTT
T ss_pred eeeecccccC
Confidence 9999999854
No 420
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.32 E-value=0.0083 Score=57.50 Aligned_cols=25 Identities=36% Similarity=0.719 Sum_probs=21.4
Q ss_pred ccccccCCCCCcHHHHHHHHHHhcC
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANFLN 251 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~l~ 251 (504)
-..|+.||||||||++.+-+|+.+.
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s 162 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLS 162 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhh
Confidence 3467999999999999999998763
No 421
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=96.32 E-value=0.003 Score=58.86 Aligned_cols=29 Identities=34% Similarity=0.419 Sum_probs=25.5
Q ss_pred ccccCCCCCcHHHHHHHHHHhcCCcEEEEe
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLNYDVYDLE 258 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~~~i~~l~ 258 (504)
+.|+|+||+|||++++.++. +|+++++.|
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~i~~D 30 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE-LGIPVIDAD 30 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCCEEecC
Confidence 57899999999999999999 888877664
No 422
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.30 E-value=0.0024 Score=59.23 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=22.1
Q ss_pred cccccCCCCCcHHHHHHHHHHhcCC
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFLNY 252 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l~~ 252 (504)
-+++.||||+|||+++++|+..++.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCc
Confidence 3678999999999999999998754
No 423
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.28 E-value=0.0099 Score=54.49 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=21.5
Q ss_pred ccccccCCCCCcHHHHHHHHHHhc
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANFL 250 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~l 250 (504)
.-+.|.||.|+|||+|.+.|++..
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 347899999999999999999876
No 424
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.28 E-value=0.015 Score=53.15 Aligned_cols=63 Identities=27% Similarity=0.434 Sum_probs=38.9
Q ss_pred ccccccCCCCCcHHHHHHHHHHhc---------------CCcEEEEe----cc--ccC-Ch---HHHHHHHHhcc--CCe
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANFL---------------NYDVYDLE----LT--TVQ-DN---SELRSLLIDTS--SKS 279 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~l---------------~~~i~~l~----~~--~~~-~~---~~l~~l~~~~~--~~~ 279 (504)
+-.++.||.|+|||++.++++-.+ +..+...+ .. .+. .. -.+.+.+...+ .|.
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~lS~G~~~~~~la~~L~~~~~~~~~ 101 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSAELIFTRLQLSGGEKELSALALILALASLKPRP 101 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeEEEEehheeeccccHHHHHHHHHHHHhcCCCCCC
Confidence 467899999999999999985332 33222222 11 111 11 22444454443 789
Q ss_pred EEEEeccccc
Q 037859 280 ILVIEDIDCS 289 (504)
Q Consensus 280 Il~iDeiD~~ 289 (504)
+++|||+..-
T Consensus 102 llllDEp~~g 111 (162)
T cd03227 102 LYILDEIDRG 111 (162)
T ss_pred EEEEeCCCCC
Confidence 9999999873
No 425
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.28 E-value=0.0038 Score=56.81 Aligned_cols=34 Identities=32% Similarity=0.462 Sum_probs=27.6
Q ss_pred ccccCCCCCcHHHHHHHHHHhc---CCcEEEEecccc
Q 037859 229 YLLYGPPGTGKSTMIAAMANFL---NYDVYDLELTTV 262 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~ 262 (504)
+.|.|.||+|||++|+++...| +.+++.++...+
T Consensus 5 IwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~l 41 (156)
T PF01583_consen 5 IWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNL 41 (156)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcch
Confidence 6789999999999999999877 777888865443
No 426
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=96.27 E-value=0.0069 Score=53.71 Aligned_cols=21 Identities=29% Similarity=0.422 Sum_probs=19.1
Q ss_pred ccccCCCCCcHHHHHHHHHHh
Q 037859 229 YLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~ 249 (504)
+.|.||+|+|||+|++++.+.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 578999999999999999875
No 427
>PRK12338 hypothetical protein; Provisional
Probab=96.26 E-value=0.003 Score=64.09 Aligned_cols=29 Identities=31% Similarity=0.339 Sum_probs=25.4
Q ss_pred cccccccCCCCCcHHHHHHHHHHhcCCcE
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFLNYDV 254 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l~~~i 254 (504)
|.-+++.|+||||||++|+++|..++...
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~l~~~~ 32 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELARTLNIKH 32 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHCCCeE
Confidence 34578899999999999999999998754
No 428
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.25 E-value=0.0035 Score=57.97 Aligned_cols=31 Identities=35% Similarity=0.487 Sum_probs=24.7
Q ss_pred cccccCCCCCcHHHHHHHHHHhc---CCcEEEEe
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFL---NYDVYDLE 258 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~ 258 (504)
-+.|.|+||+|||++++++|..+ +.++..++
T Consensus 6 ~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id 39 (175)
T PRK00889 6 TVWFTGLSGAGKTTIARALAEKLREAGYPVEVLD 39 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEc
Confidence 37789999999999999999987 33455454
No 429
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=96.24 E-value=0.013 Score=53.45 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=19.5
Q ss_pred cccccCCCCCcHHHHHHHHHHh
Q 037859 228 GYLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~ 249 (504)
-+++.|+||+|||+|+.++.+.
T Consensus 5 ki~vvG~~~~GKSsl~~~~~~~ 26 (167)
T cd01867 5 KLLLIGDSGVGKSCLLLRFSED 26 (167)
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 3789999999999999999864
No 430
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=96.24 E-value=0.019 Score=60.68 Aligned_cols=77 Identities=22% Similarity=0.336 Sum_probs=46.0
Q ss_pred cChhHHHHHHHhh-------------ccc---ccccCCCCCcHHHHHHHHHHhcCCcEEEEecc----cc----CChHHH
Q 037859 213 METKKKEEIKKDL-------------KKG---YLLYGPPGTGKSTMIAAMANFLNYDVYDLELT----TV----QDNSEL 268 (504)
Q Consensus 213 ~~~~~k~~i~~~l-------------~rg---~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~----~~----~~~~~l 268 (504)
+..+.|+.|...| .|| +||-|.|||.||-|.+-+-.-.-.-+|.---. .+ .-++.-
T Consensus 335 G~~DiKkAiaClLFgGsrK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvsPIaVYTSGKGSSAAGLTASV~RD~~t 414 (729)
T KOG0481|consen 335 GHEDIKKAIACLLFGGSRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVSPIAVYTSGKGSSAAGLTASVIRDPST 414 (729)
T ss_pred CchhHHHHHHHHhhcCccccCCCcceeccceeEEEecCCchhHHHHHHHHHhcCceEEEecCCCcccccceeeEEecCCc
Confidence 5556666666555 455 89999999999999998866554444432100 00 000111
Q ss_pred HHHHHh-----ccCCeEEEEeccccc
Q 037859 269 RSLLID-----TSSKSILVIEDIDCS 289 (504)
Q Consensus 269 ~~l~~~-----~~~~~Il~iDeiD~~ 289 (504)
|..+.+ .....|+.|||+|.+
T Consensus 415 ReFylEGGAMVLADgGVvCIDEFDKM 440 (729)
T KOG0481|consen 415 REFYLEGGAMVLADGGVVCIDEFDKM 440 (729)
T ss_pred ceEEEecceEEEecCCEEEeehhhcc
Confidence 111111 146789999999985
No 431
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=96.22 E-value=0.016 Score=52.04 Aligned_cols=56 Identities=30% Similarity=0.453 Sum_probs=38.8
Q ss_pred ccccCCCCCcHHHHHHHHHHhcC--------------------CcEEEEeccccCChHHH-----HHHHHhccCCeEEEE
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLN--------------------YDVYDLELTTVQDNSEL-----RSLLIDTSSKSILVI 283 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~--------------------~~i~~l~~~~~~~~~~l-----~~l~~~~~~~~Il~i 283 (504)
++|.|+=|.|||++++++|..++ .++|-+|+--+.+.+++ ...|. ..+|.+|
T Consensus 28 v~L~GdLGAGKTtf~rgi~~~Lg~~~~V~SPTFtlv~~Y~~~~~~lyH~DlYRl~d~ee~~~lg~~e~~~---~~gv~lI 104 (149)
T COG0802 28 VLLSGDLGAGKTTLVRGIAKGLGVDGNVKSPTFTLVEEYEEGRLPLYHFDLYRLSDPEELDELGLDEYFD---GDGICLI 104 (149)
T ss_pred EEEEcCCcCChHHHHHHHHHHcCCCCcccCCCeeeehhhcCCCCcEEEEeeeccCChHHhHhcCHHHHhC---CCcEEEE
Confidence 78999999999999999999885 34666666666544432 23332 3677777
Q ss_pred eccc
Q 037859 284 EDID 287 (504)
Q Consensus 284 DeiD 287 (504)
|=-+
T Consensus 105 EW~e 108 (149)
T COG0802 105 EWPE 108 (149)
T ss_pred ECcc
Confidence 6333
No 432
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.22 E-value=0.0028 Score=60.07 Aligned_cols=35 Identities=37% Similarity=0.419 Sum_probs=25.6
Q ss_pred cccccccCCCCCcHHHHHHHHHHhc---CCcEEEEecc
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFL---NYDVYDLELT 260 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~ 260 (504)
|+-++|.||+|+||||.+.-+|.++ +..+..+.+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D 38 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISAD 38 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEES
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCC
Confidence 4568899999999999999998776 4444444443
No 433
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=96.21 E-value=0.0035 Score=57.59 Aligned_cols=26 Identities=31% Similarity=0.428 Sum_probs=22.2
Q ss_pred cCCCCCcHHHHHHHHHHhcCCcEEEE
Q 037859 232 YGPPGTGKSTMIAAMANFLNYDVYDL 257 (504)
Q Consensus 232 ~GPpGtGKTsla~aiA~~l~~~i~~l 257 (504)
.||||||||++++++|..++..+++-
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~~ 26 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLDG 26 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEeC
Confidence 49999999999999999998655543
No 434
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=96.21 E-value=0.0039 Score=68.18 Aligned_cols=31 Identities=29% Similarity=0.669 Sum_probs=25.4
Q ss_pred HHHhh----ccc--ccccCCCCCcHHHHHHHHHHhcC
Q 037859 221 IKKDL----KKG--YLLYGPPGTGKSTMIAAMANFLN 251 (504)
Q Consensus 221 i~~~l----~rg--~LL~GPpGtGKTsla~aiA~~l~ 251 (504)
+++++ ++| +.+.||+|+|||||++.+++...
T Consensus 350 vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~ 386 (529)
T TIGR02868 350 VLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLD 386 (529)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 45555 455 89999999999999999998763
No 435
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.21 E-value=0.032 Score=50.97 Aligned_cols=31 Identities=32% Similarity=0.386 Sum_probs=23.1
Q ss_pred cc-ccccCCCCCcHHHHHHHHHHhc---CCcEEEE
Q 037859 227 KG-YLLYGPPGTGKSTMIAAMANFL---NYDVYDL 257 (504)
Q Consensus 227 rg-~LL~GPpGtGKTsla~aiA~~l---~~~i~~l 257 (504)
+| +.+|+++|+|||++|-++|-.. |..+..+
T Consensus 2 ~G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~v 36 (159)
T cd00561 2 KGLIQVYTGNGKGKTTAALGLALRALGHGYRVGVV 36 (159)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 35 4578999999999999987543 6665553
No 436
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.20 E-value=0.0031 Score=58.29 Aligned_cols=22 Identities=36% Similarity=0.773 Sum_probs=19.7
Q ss_pred ccccCCCCCcHHHHHHHHHHhc
Q 037859 229 YLLYGPPGTGKSTMIAAMANFL 250 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l 250 (504)
++|.|+||+||||+++.++.++
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 6899999999999999999887
No 437
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=96.20 E-value=0.0055 Score=63.52 Aligned_cols=44 Identities=30% Similarity=0.542 Sum_probs=33.4
Q ss_pred CccccccccChhHHHHHHHhhccc-ccccCCCCCcHHHHHHHHHHhc
Q 037859 205 PATFDTLAMETKKKEEIKKDLKKG-YLLYGPPGTGKSTMIAAMANFL 250 (504)
Q Consensus 205 p~~f~~~~~~~~~k~~i~~~l~rg-~LL~GPpGtGKTsla~aiA~~l 250 (504)
+.+|+.+.+++...+.+.. ++| ++++||+|+||||+++++++++
T Consensus 114 ~~~l~~l~~~~~~~~~~~~--~~glilI~GpTGSGKTTtL~aLl~~i 158 (358)
T TIGR02524 114 PPKLSKLDLPAAIIDAIAP--QEGIVFITGATGSGKSTLLAAIIREL 158 (358)
T ss_pred CCCHHHcCCCHHHHHHHhc--cCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 4568888887654443321 455 7889999999999999999886
No 438
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=96.20 E-value=0.0063 Score=56.65 Aligned_cols=26 Identities=31% Similarity=0.581 Sum_probs=23.4
Q ss_pred cccccCCCCCcHHHHHHHHHHhcCCc
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFLNYD 253 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l~~~ 253 (504)
-+.+.||+|+|||++++++++.++..
T Consensus 5 ~i~l~G~sGsGKSTl~~~la~~l~~~ 30 (176)
T PRK09825 5 SYILMGVSGSGKSLIGSKIAALFSAK 30 (176)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCE
Confidence 37889999999999999999998864
No 439
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=96.19 E-value=0.0052 Score=64.70 Aligned_cols=149 Identities=18% Similarity=0.191 Sum_probs=85.1
Q ss_pred cccChhHHHHHHHhh-------------ccc---ccccCCCCCcHHHHHHHHHHhcCCcEEEEeccc--cC-ChHHHHHH
Q 037859 211 LAMETKKKEEIKKDL-------------KKG---YLLYGPPGTGKSTMIAAMANFLNYDVYDLELTT--VQ-DNSELRSL 271 (504)
Q Consensus 211 ~~~~~~~k~~i~~~l-------------~rg---~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~--~~-~~~~l~~l 271 (504)
+-+.+++|+.++-.+ -|| ++|.|.||+.||-|.+.+.+-.-...|.---.+ ++ +..-++.-
T Consensus 344 IyGheDVKKaLLLlLVGgvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGSSGVGLTAAVmkDp 423 (721)
T KOG0482|consen 344 IYGHEDVKKALLLLLVGGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGSSGVGLTAAVMKDP 423 (721)
T ss_pred hccchHHHHHHHHHhhCCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCCCccccchhhhcCC
Confidence 346677888887766 233 899999999999999999987766666432111 11 11111110
Q ss_pred HHh----------ccCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHH----HHHhhhhc
Q 037859 272 LID----------TSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTL----SGLLNFID 337 (504)
Q Consensus 272 ~~~----------~~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----s~lL~~lD 337 (504)
... .....|-.|||+|.+.+. .|. . -.....+.++ .+++..+.
T Consensus 424 vTgEM~LEGGALVLAD~GICCIDEfDKM~e~--DRt-A--------------------IHEVMEQQTISIaKAGI~TtLN 480 (721)
T KOG0482|consen 424 VTGEMVLEGGALVLADGGICCIDEFDKMDES--DRT-A--------------------IHEVMEQQTISIAKAGINTTLN 480 (721)
T ss_pred CCCeeEeccceEEEccCceEeehhhhhhhhh--hhH-H--------------------HHHHHHhhhhhhhhhccccchh
Confidence 000 135778899999996320 000 0 0000001111 12222211
Q ss_pred CccccCCCceEEEEecCCCC-------------CCChhhhcCCCceeEEEe-cCCCHHHHHHHHHHhc
Q 037859 338 GLWSASGEERIIVFTTNYVD-------------KLDPALIRRGRMDKHIEM-SYCCFEAFKVLAKNYL 391 (504)
Q Consensus 338 g~~~~~~~~~ivI~tTN~~e-------------~Ld~ALlRpGR~d~~I~~-~~p~~e~~~~i~~~~l 391 (504)
...-|+++.|... .||+||+. |||...-+ +.|+.+.=..|+++..
T Consensus 481 -------AR~sILaAANPayGRYnprrs~e~NI~LPaALLS--RFDll~Li~D~pdrd~D~~LA~HiT 539 (721)
T KOG0482|consen 481 -------ARTSILAAANPAYGRYNPRRSPEQNINLPAALLS--RFDLLWLIQDRPDRDNDLRLAQHIT 539 (721)
T ss_pred -------hhHHhhhhcCccccccCcccChhHhcCCcHHHHH--hhhhhhhhccCCcccchHHHHHHhH
Confidence 1123566666431 48999999 99976544 6798888788887754
No 440
>PLN02674 adenylate kinase
Probab=96.19 E-value=0.0035 Score=61.40 Aligned_cols=29 Identities=31% Similarity=0.472 Sum_probs=25.4
Q ss_pred ccccccCCCCCcHHHHHHHHHHhcCCcEE
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANFLNYDVY 255 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~l~~~i~ 255 (504)
..++|.||||+|||++++.||..+++..+
T Consensus 32 ~~i~l~G~PGsGKgT~a~~La~~~~~~hi 60 (244)
T PLN02674 32 KRLILIGPPGSGKGTQSPIIKDEYCLCHL 60 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcCCcEE
Confidence 35889999999999999999999986544
No 441
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=96.19 E-value=0.01 Score=65.58 Aligned_cols=23 Identities=35% Similarity=0.615 Sum_probs=21.5
Q ss_pred ccccCCCCCcHHHHHHHHHHhcC
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLN 251 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~ 251 (504)
+.+.||.|+|||||++.|++.+.
T Consensus 372 ~aIvG~sGsGKSTLl~ll~gl~~ 394 (582)
T PRK11176 372 VALVGRSGSGKSTIANLLTRFYD 394 (582)
T ss_pred EEEECCCCCCHHHHHHHHHhccC
Confidence 99999999999999999999763
No 442
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.16 E-value=0.0048 Score=56.92 Aligned_cols=35 Identities=34% Similarity=0.423 Sum_probs=28.3
Q ss_pred ccccCCCCCcHHHHHHHHHHhc---CCcEEEEeccccC
Q 037859 229 YLLYGPPGTGKSTMIAAMANFL---NYDVYDLELTTVQ 263 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~~ 263 (504)
+++.||||+|||+++..+|..+ +..+..+++....
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~ 40 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYR 40 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Confidence 5789999999999999998875 6677777766543
No 443
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=96.16 E-value=0.0049 Score=66.56 Aligned_cols=47 Identities=30% Similarity=0.480 Sum_probs=39.3
Q ss_pred CccccccccChhHHHHHHHhh--ccc-ccccCCCCCcHHHHHHHHHHhcC
Q 037859 205 PATFDTLAMETKKKEEIKKDL--KKG-YLLYGPPGTGKSTMIAAMANFLN 251 (504)
Q Consensus 205 p~~f~~~~~~~~~k~~i~~~l--~rg-~LL~GPpGtGKTsla~aiA~~l~ 251 (504)
+.+++.+++.++..+.+...+ ++| +|++||+|+|||++..++.++++
T Consensus 218 ~~~l~~Lg~~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL~a~L~~l~ 267 (486)
T TIGR02533 218 RLDLETLGMSPELLSRFERLIRRPHGIILVTGPTGSGKTTTLYAALSRLN 267 (486)
T ss_pred CCCHHHcCCCHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHhccC
Confidence 457899999998888877766 677 57899999999999999888774
No 444
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=96.16 E-value=0.021 Score=52.09 Aligned_cols=21 Identities=24% Similarity=0.458 Sum_probs=18.9
Q ss_pred ccccCCCCCcHHHHHHHHHHh
Q 037859 229 YLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~ 249 (504)
++|.|+||+|||+++.++++.
T Consensus 4 i~liG~~~~GKTsli~~~~~~ 24 (168)
T cd04177 4 IVVLGAGGVGKSALTVQFVQN 24 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999998754
No 445
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=96.15 E-value=0.0037 Score=61.17 Aligned_cols=31 Identities=35% Similarity=0.731 Sum_probs=22.7
Q ss_pred ccCCCCCcHHHHHHHHHHhc---CCcEEEEeccc
Q 037859 231 LYGPPGTGKSTMIAAMANFL---NYDVYDLELTT 261 (504)
Q Consensus 231 L~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~ 261 (504)
+.||||+||||+++++...+ +++++.+|+.-
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDP 34 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDP 34 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--T
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcch
Confidence 36999999999999999877 56777777653
No 446
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.15 E-value=0.011 Score=65.66 Aligned_cols=25 Identities=40% Similarity=0.825 Sum_probs=22.4
Q ss_pred ccc--ccccCCCCCcHHHHHHHHHHhc
Q 037859 226 KKG--YLLYGPPGTGKSTMIAAMANFL 250 (504)
Q Consensus 226 ~rg--~LL~GPpGtGKTsla~aiA~~l 250 (504)
++| +.+.||+|+|||||++.+++.+
T Consensus 374 ~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 374 PAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 455 8999999999999999999876
No 447
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.15 E-value=0.0052 Score=57.62 Aligned_cols=38 Identities=24% Similarity=0.446 Sum_probs=28.0
Q ss_pred ChhHHHHHHHhh--cccccccCCCCCcHHHHHHHHHHhcC
Q 037859 214 ETKKKEEIKKDL--KKGYLLYGPPGTGKSTMIAAMANFLN 251 (504)
Q Consensus 214 ~~~~k~~i~~~l--~rg~LL~GPpGtGKTsla~aiA~~l~ 251 (504)
+++..+.+...+ +..+++.||+|+|||++++++++.+.
T Consensus 11 ~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 11 SPLQAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CHHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 344444444444 44589999999999999999998764
No 448
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.15 E-value=0.0048 Score=64.90 Aligned_cols=29 Identities=28% Similarity=0.454 Sum_probs=26.0
Q ss_pred cccccccCCCCCcHHHHHHHHHHhcCCcE
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFLNYDV 254 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l~~~i 254 (504)
.+-+.+.|++|||||||+++||..+|...
T Consensus 219 ~~~IvI~G~~gsGKTTL~~~La~~~g~~~ 247 (399)
T PRK08099 219 VRTVAILGGESSGKSTLVNKLANIFNTTS 247 (399)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHhCCCe
Confidence 56689999999999999999999988764
No 449
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.15 E-value=0.021 Score=58.31 Aligned_cols=25 Identities=32% Similarity=0.634 Sum_probs=22.6
Q ss_pred cccccccCCCCCcHHHHHHHHHHhc
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFL 250 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l 250 (504)
++.+++.||+|+|||+++++++.++
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~ 172 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEM 172 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhh
Confidence 6679999999999999999999863
No 450
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.14 E-value=0.0032 Score=59.76 Aligned_cols=23 Identities=52% Similarity=0.928 Sum_probs=20.9
Q ss_pred ccccCCCCCcHHHHHHHHHHhcC
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLN 251 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~ 251 (504)
+++.||+|+|||++++++++++.
T Consensus 4 ilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhh
Confidence 67899999999999999998874
No 451
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.14 E-value=0.017 Score=57.23 Aligned_cols=43 Identities=19% Similarity=0.293 Sum_probs=28.7
Q ss_pred ccccc--ccCCCCCcHHHHHHHHHHhc---------CCcEEEEeccccCChHHH
Q 037859 226 KKGYL--LYGPPGTGKSTMIAAMANFL---------NYDVYDLELTTVQDNSEL 268 (504)
Q Consensus 226 ~rg~L--L~GPpGtGKTsla~aiA~~l---------~~~i~~l~~~~~~~~~~l 268 (504)
+.|.+ ++||||||||.|+-.+|-.. +..++++|...--...++
T Consensus 36 ~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl 89 (256)
T PF08423_consen 36 PTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERL 89 (256)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHH
T ss_pred CCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHH
Confidence 34433 89999999999998887433 345788877653333333
No 452
>PLN02165 adenylate isopentenyltransferase
Probab=96.14 E-value=0.0035 Score=63.83 Aligned_cols=33 Identities=18% Similarity=0.351 Sum_probs=28.2
Q ss_pred cccccCCCCCcHHHHHHHHHHhcCCcEEEEecc
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFLNYDVYDLELT 260 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~ 260 (504)
-++|.||+|+|||+|+..||..++..++..|.-
T Consensus 45 iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~ 77 (334)
T PLN02165 45 VVVIMGATGSGKSRLSVDLATRFPSEIINSDKM 77 (334)
T ss_pred EEEEECCCCCcHHHHHHHHHHHcCCceecCChh
Confidence 478899999999999999999999877765433
No 453
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.14 E-value=0.017 Score=55.76 Aligned_cols=62 Identities=19% Similarity=0.381 Sum_probs=40.5
Q ss_pred ccccccCCCCCcHHHHHHHHHHh-----cCC---------cEEE---Eecc---ccC--------ChHHHHHHHHhccCC
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANF-----LNY---------DVYD---LELT---TVQ--------DNSELRSLLIDTSSK 278 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~-----l~~---------~i~~---l~~~---~~~--------~~~~l~~l~~~~~~~ 278 (504)
+-++|+||.|.|||++.+.++.. .|. ++++ .... ++. .-.++..++..+..+
T Consensus 31 ~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~vpa~~~~i~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~il~~~~~~ 110 (218)
T cd03286 31 RILVLTGPNMGGKSTLLRTVCLAVIMAQMGMDVPAKSMRLSLVDRIFTRIGARDDIMKGESTFMVELSETANILRHATPD 110 (218)
T ss_pred cEEEEECCCCCchHHHHHHHHHHHHHHHcCCccCccccEeccccEEEEecCcccccccCcchHHHHHHHHHHHHHhCCCC
Confidence 45889999999999999988653 232 1111 1111 011 113456777778899
Q ss_pred eEEEEecccc
Q 037859 279 SILVIEDIDC 288 (504)
Q Consensus 279 ~Il~iDeiD~ 288 (504)
++++|||+-.
T Consensus 111 sLvLlDE~~~ 120 (218)
T cd03286 111 SLVILDELGR 120 (218)
T ss_pred eEEEEecccC
Confidence 9999999854
No 454
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=96.12 E-value=0.018 Score=67.28 Aligned_cols=79 Identities=20% Similarity=0.291 Sum_probs=51.0
Q ss_pred cccChhHHHHHHHhh--cccccccCCCCCcHHHHHHHHHHh---cCCcEEEEeccccC----------ChHHHHHHHHh-
Q 037859 211 LAMETKKKEEIKKDL--KKGYLLYGPPGTGKSTMIAAMANF---LNYDVYDLELTTVQ----------DNSELRSLLID- 274 (504)
Q Consensus 211 ~~~~~~~k~~i~~~l--~rg~LL~GPpGtGKTsla~aiA~~---l~~~i~~l~~~~~~----------~~~~l~~l~~~- 274 (504)
..+.+++++.+.... .+-.++.|++|||||++.+++... .|+.++-+-.+..- ....+..++..
T Consensus 380 ~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~~~~~~~e~~G~~V~g~ApTgkAA~~L~e~~Gi~a~TIas~ll~~ 459 (1102)
T PRK13826 380 ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMKAAREAWEAAGYRVVGGALAGKAAEGLEKEAGIQSRTLSSWELRW 459 (1102)
T ss_pred CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcHHHHHHHHHhhCCCeeeHHHHHhhh
Confidence 457888888776543 344788999999999999998764 47777766443320 11123332211
Q ss_pred ------ccCCeEEEEeccccc
Q 037859 275 ------TSSKSILVIEDIDCS 289 (504)
Q Consensus 275 ------~~~~~Il~iDeiD~~ 289 (504)
...+.||||||+-.+
T Consensus 460 ~~~~~~l~~~~vlVIDEAsMv 480 (1102)
T PRK13826 460 NQGRDQLDNKTVFVLDEAGMV 480 (1102)
T ss_pred ccCccCCCCCcEEEEECcccC
Confidence 124679999998654
No 455
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=96.11 E-value=0.013 Score=64.10 Aligned_cols=26 Identities=38% Similarity=0.761 Sum_probs=22.7
Q ss_pred ccc--ccccCCCCCcHHHHHHHHHHhcC
Q 037859 226 KKG--YLLYGPPGTGKSTMIAAMANFLN 251 (504)
Q Consensus 226 ~rg--~LL~GPpGtGKTsla~aiA~~l~ 251 (504)
++| +.+.||+|+|||||++.+++...
T Consensus 346 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~ 373 (529)
T TIGR02857 346 PPGERVALVGPSGAGKSTLLNLLLGFVD 373 (529)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 455 88999999999999999998763
No 456
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.11 E-value=0.013 Score=55.52 Aligned_cols=23 Identities=39% Similarity=0.531 Sum_probs=19.7
Q ss_pred ccc--ccccCCCCCcHHHHHHHHHH
Q 037859 226 KKG--YLLYGPPGTGKSTMIAAMAN 248 (504)
Q Consensus 226 ~rg--~LL~GPpGtGKTsla~aiA~ 248 (504)
|-| +|+.|+-|||||.|.+.+|.
T Consensus 26 P~GsL~lIEGd~~tGKSvLsqr~~Y 50 (235)
T COG2874 26 PVGSLILIEGDNGTGKSVLSQRFAY 50 (235)
T ss_pred ccCeEEEEECCCCccHHHHHHHHHH
Confidence 445 67889999999999999985
No 457
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.09 E-value=0.0076 Score=61.50 Aligned_cols=25 Identities=24% Similarity=0.448 Sum_probs=23.1
Q ss_pred cccccccCCCCCcHHHHHHHHHHhc
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFL 250 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l 250 (504)
++++|+.||+|+|||++++|++.++
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i 168 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 6779999999999999999999876
No 458
>PRK06761 hypothetical protein; Provisional
Probab=96.09 E-value=0.0046 Score=61.78 Aligned_cols=32 Identities=31% Similarity=0.473 Sum_probs=26.9
Q ss_pred cccccCCCCCcHHHHHHHHHHhcCCcEEEEec
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFLNYDVYDLEL 259 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~ 259 (504)
-+++.||||+||||+++.++..+....+.++.
T Consensus 5 lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~ 36 (282)
T PRK06761 5 LIIIEGLPGFGKSTTAKMLNDILSQNGIEVEL 36 (282)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCcCceEEEE
Confidence 47889999999999999999999766555543
No 459
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=96.08 E-value=0.011 Score=53.43 Aligned_cols=21 Identities=24% Similarity=0.528 Sum_probs=18.8
Q ss_pred ccccCCCCCcHHHHHHHHHHh
Q 037859 229 YLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~ 249 (504)
++|.|++|+|||+|+.++...
T Consensus 2 i~~vG~~~~GKstLi~~l~~~ 22 (167)
T cd04160 2 VLILGLDNAGKTTFLEQLKTL 22 (167)
T ss_pred EEEEecCCCCHHHHHHHHhhh
Confidence 678999999999999999754
No 460
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.07 E-value=0.0075 Score=62.47 Aligned_cols=24 Identities=33% Similarity=0.483 Sum_probs=21.6
Q ss_pred ccccccCCCCCcHHHHHHHHHHhc
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANFL 250 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~l 250 (504)
+-+++.|.||||||.|+-.+|..+
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHh
Confidence 346889999999999999999988
No 461
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.07 E-value=0.012 Score=66.09 Aligned_cols=25 Identities=28% Similarity=0.554 Sum_probs=22.8
Q ss_pred ccc--ccccCCCCCcHHHHHHHHHHhc
Q 037859 226 KKG--YLLYGPPGTGKSTMIAAMANFL 250 (504)
Q Consensus 226 ~rg--~LL~GPpGtGKTsla~aiA~~l 250 (504)
+.| +-+.|++|||||||+|-+.+..
T Consensus 497 ~~Ge~vaIvG~SGsGKSTL~KLL~gly 523 (709)
T COG2274 497 PPGEKVAIVGRSGSGKSTLLKLLLGLY 523 (709)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 667 9999999999999999999865
No 462
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.07 E-value=0.0093 Score=57.52 Aligned_cols=32 Identities=28% Similarity=0.516 Sum_probs=27.3
Q ss_pred ccccCCCCCcHHHHHHHHHHhc---CCcEEEEecc
Q 037859 229 YLLYGPPGTGKSTMIAAMANFL---NYDVYDLELT 260 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~ 260 (504)
++++||||+|||+++..+|... +.+++++++.
T Consensus 26 ~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 26 TQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 7899999999999999998644 6778877776
No 463
>PLN02459 probable adenylate kinase
Probab=96.07 E-value=0.0044 Score=61.09 Aligned_cols=28 Identities=25% Similarity=0.526 Sum_probs=24.7
Q ss_pred ccccCCCCCcHHHHHHHHHHhcCCcEEE
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLNYDVYD 256 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~~~i~~ 256 (504)
++|.||||+|||++++.+|..+++..+.
T Consensus 32 ii~~G~PGsGK~T~a~~la~~~~~~~is 59 (261)
T PLN02459 32 WVFLGCPGVGKGTYASRLSKLLGVPHIA 59 (261)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 7788999999999999999999876554
No 464
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.07 E-value=0.006 Score=58.20 Aligned_cols=32 Identities=19% Similarity=0.200 Sum_probs=25.0
Q ss_pred cccccCCCCCcHHHHHHHHHHhcC-CcEEEEec
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFLN-YDVYDLEL 259 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l~-~~i~~l~~ 259 (504)
-+.+.||+|||||||+++|+..++ ..+..++.
T Consensus 8 iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~ 40 (209)
T PRK05480 8 IIGIAGGSGSGKTTVASTIYEELGDESIAVIPQ 40 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceEEEeC
Confidence 467899999999999999999883 33444444
No 465
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=96.04 E-value=0.0046 Score=58.60 Aligned_cols=30 Identities=27% Similarity=0.224 Sum_probs=26.7
Q ss_pred ccccCCCCCcHHHHHHHHHHhcCCcEEEEe
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLNYDVYDLE 258 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~~~i~~l~ 258 (504)
+.++|++|+|||++++.++..+|+++++.|
T Consensus 4 i~itG~~gsGKst~~~~l~~~~g~~~i~~D 33 (195)
T PRK14730 4 IGLTGGIASGKSTVGNYLAQQKGIPILDAD 33 (195)
T ss_pred EEEECCCCCCHHHHHHHHHHhhCCeEeeCc
Confidence 678999999999999999998898887654
No 466
>PRK06851 hypothetical protein; Provisional
Probab=96.03 E-value=0.006 Score=63.19 Aligned_cols=43 Identities=35% Similarity=0.539 Sum_probs=33.2
Q ss_pred HHHHHhhcccccccCCCCCcHHHHHHHHHHhc---CCcEEEEeccc
Q 037859 219 EEIKKDLKKGYLLYGPPGTGKSTMIAAMANFL---NYDVYDLELTT 261 (504)
Q Consensus 219 ~~i~~~l~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~ 261 (504)
+.+++.+.|-|+|.||||||||++++.++.++ |+++...-|+.
T Consensus 207 ~~l~~~~~~~~~i~G~pG~GKstl~~~i~~~a~~~G~~v~~~hC~~ 252 (367)
T PRK06851 207 PSLTEGVKNRYFLKGRPGTGKSTMLKKIAKAAEERGFDVEVYHCGF 252 (367)
T ss_pred HhHhcccceEEEEeCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 34445557889999999999999999998877 66666655543
No 467
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=96.03 E-value=0.004 Score=60.11 Aligned_cols=22 Identities=36% Similarity=0.567 Sum_probs=19.7
Q ss_pred ccccCCCCCcHHHHHHHHHHhc
Q 037859 229 YLLYGPPGTGKSTMIAAMANFL 250 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l 250 (504)
++++|+||+|||++++.++...
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999884
No 468
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.02 E-value=0.0043 Score=47.26 Aligned_cols=22 Identities=45% Similarity=0.810 Sum_probs=19.8
Q ss_pred ccccCCCCCcHHHHHHHHHHhc
Q 037859 229 YLLYGPPGTGKSTMIAAMANFL 250 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l 250 (504)
.+|+||.|+|||++..|+.-.+
T Consensus 26 tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 26 TLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999997654
No 469
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.02 E-value=0.0024 Score=60.03 Aligned_cols=25 Identities=36% Similarity=0.600 Sum_probs=22.2
Q ss_pred ccccCCCCCcHHHHHHHHHHhcCCc
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLNYD 253 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~~~ 253 (504)
++|.|+||+|||++++-+|..|.-.
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~~~ 28 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELRQE 28 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHh
Confidence 6789999999999999999998443
No 470
>PHA00012 I assembly protein
Probab=96.01 E-value=0.017 Score=58.25 Aligned_cols=57 Identities=12% Similarity=0.154 Sum_probs=35.8
Q ss_pred cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccCCCceEEEEecCC
Q 037859 276 SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERIIVFTTNY 355 (504)
Q Consensus 276 ~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~~~~ivI~tTN~ 355 (504)
+..+|++|||+...++.++. +... ...+.+.+... ...+.-+|++|.+
T Consensus 80 p~gsLlVlDEaq~~fp~R~~-------------------------~sk~-p~~vie~l~~h------Rh~G~DvilITQ~ 127 (361)
T PHA00012 80 SKNGLLVLDECGTWFNSRSW-------------------------NDKE-RQPVIDWFLHA------RKLGWDIIFIIQD 127 (361)
T ss_pred CCCcEEEEECcccccCCCCc-------------------------CcCC-cHHHHHHHHHh------ccCCceEEEEcCC
Confidence 57799999999998743221 1111 12233333332 2234678899999
Q ss_pred CCCCChhhh
Q 037859 356 VDKLDPALI 364 (504)
Q Consensus 356 ~e~Ld~ALl 364 (504)
+..+|+.+.
T Consensus 128 ps~VDs~IR 136 (361)
T PHA00012 128 ISIMDKQAR 136 (361)
T ss_pred HHHHhHHHH
Confidence 999998775
No 471
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=96.01 E-value=0.0036 Score=56.17 Aligned_cols=42 Identities=21% Similarity=0.350 Sum_probs=31.9
Q ss_pred cccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccCChHHHHHH
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQDNSELRSL 271 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~~l~~l 271 (504)
.+++.|++|||||+++++++.+|++++++-| .+...++..+.
T Consensus 14 ~i~vmGvsGsGKSTigk~L~~~l~~~F~dgD--d~Hp~~NveKM 55 (191)
T KOG3354|consen 14 VIVVMGVSGSGKSTIGKALSEELGLKFIDGD--DLHPPANVEKM 55 (191)
T ss_pred eEEEEecCCCChhhHHHHHHHHhCCcccccc--cCCCHHHHHHH
Confidence 4677899999999999999999999887543 44444444443
No 472
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=96.01 E-value=0.0099 Score=53.54 Aligned_cols=21 Identities=29% Similarity=0.400 Sum_probs=19.0
Q ss_pred ccccCCCCCcHHHHHHHHHHh
Q 037859 229 YLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~ 249 (504)
+++.|+||+|||+|+.++++.
T Consensus 3 i~~vG~~~vGKTsli~~l~~~ 23 (168)
T cd04119 3 VISMGNSGVGKSCIIKRYCEG 23 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 678999999999999999864
No 473
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.00 E-value=0.0044 Score=58.76 Aligned_cols=37 Identities=19% Similarity=0.327 Sum_probs=27.7
Q ss_pred cccccccCCCCCcHHHHHHHHHHhc-CCcEEEEecccc
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFL-NYDVYDLELTTV 262 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l-~~~i~~l~~~~~ 262 (504)
|.-+++.||||+|||+++..+...+ +-+++.++...+
T Consensus 15 P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~ 52 (199)
T PF06414_consen 15 PTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEF 52 (199)
T ss_dssp -EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGG
T ss_pred CEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHH
Confidence 6778999999999999999999888 666677765554
No 474
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.00 E-value=0.013 Score=60.93 Aligned_cols=34 Identities=32% Similarity=0.359 Sum_probs=26.6
Q ss_pred cccccccCCCCCcHHHHHHHHHHhc---CCcEEEEec
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFL---NYDVYDLEL 259 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~ 259 (504)
++-++|.||+|+||||++..||..+ +..+..+++
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~a 277 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITT 277 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEec
Confidence 3568899999999999999999876 344554544
No 475
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.00 E-value=0.0057 Score=57.10 Aligned_cols=33 Identities=27% Similarity=0.421 Sum_probs=25.2
Q ss_pred ccccCCCCCcHHHHHHHHHHhcC---CcEEEEeccc
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLN---YDVYDLELTT 261 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~---~~i~~l~~~~ 261 (504)
+.+.|+||+|||++++.|+..++ .++..+++.+
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Dd 37 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDD 37 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhh
Confidence 46889999999999999999874 4444444443
No 476
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.99 E-value=0.0044 Score=59.09 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=20.9
Q ss_pred ccccCCCCCcHHHHHHHHHHhcC
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLN 251 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~ 251 (504)
+.+.||+|+|||||+++|++.++
T Consensus 9 i~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 9 IGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 55799999999999999999876
No 477
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.99 E-value=0.016 Score=58.99 Aligned_cols=33 Identities=15% Similarity=0.116 Sum_probs=24.3
Q ss_pred ccccCCCCCcHHHHHHHHHHh---------cCCcEEEEeccc
Q 037859 229 YLLYGPPGTGKSTMIAAMANF---------LNYDVYDLELTT 261 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~---------l~~~i~~l~~~~ 261 (504)
++++||||||||.|+..+|-. .+..+++++...
T Consensus 99 teI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~ 140 (313)
T TIGR02238 99 TEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEG 140 (313)
T ss_pred EEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCC
Confidence 789999999999999877632 234566666544
No 478
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=95.94 E-value=0.026 Score=50.68 Aligned_cols=21 Identities=33% Similarity=0.583 Sum_probs=18.8
Q ss_pred ccccCCCCCcHHHHHHHHHHh
Q 037859 229 YLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~ 249 (504)
+++.|+||+|||+|+.++.+.
T Consensus 3 i~v~G~~~~GKSsli~~l~~~ 23 (161)
T cd01863 3 ILLIGDSGVGKSSLLLRFTDD 23 (161)
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 678999999999999999864
No 479
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.94 E-value=0.0041 Score=57.65 Aligned_cols=25 Identities=32% Similarity=0.448 Sum_probs=22.0
Q ss_pred cccccCCCCCcHHHHHHHHHHhcCC
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFLNY 252 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l~~ 252 (504)
-++|.||+|+|||++++.|++.+..
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~~~ 27 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEEDPN 27 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccCcc
Confidence 4789999999999999999997644
No 480
>PRK05973 replicative DNA helicase; Provisional
Probab=95.94 E-value=0.0069 Score=59.06 Aligned_cols=32 Identities=25% Similarity=0.133 Sum_probs=24.4
Q ss_pred cccccCCCCCcHHHHHHHHHHhc---CCcEEEEec
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFL---NYDVYDLEL 259 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~ 259 (504)
-+|+.|+||+|||+++-.+|.+. |.+++++++
T Consensus 66 l~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSl 100 (237)
T PRK05973 66 LVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTL 100 (237)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEE
Confidence 38899999999999988776543 666655544
No 481
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=95.93 E-value=0.0056 Score=57.59 Aligned_cols=29 Identities=24% Similarity=0.299 Sum_probs=23.1
Q ss_pred ccccCCCCCcHHHHHHHHHHhc-CCcEEEE
Q 037859 229 YLLYGPPGTGKSTMIAAMANFL-NYDVYDL 257 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l-~~~i~~l 257 (504)
+.+.|+||||||++|+.++..+ +..++.+
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~~~~~~i~~ 31 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRILPNCCVIHQ 31 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeEEcc
Confidence 4578999999999999999998 4444433
No 482
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.93 E-value=0.0073 Score=57.01 Aligned_cols=31 Identities=23% Similarity=0.274 Sum_probs=23.5
Q ss_pred ccccCCCCCcHHHHHHHHHHhcC-CcEEEEec
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLN-YDVYDLEL 259 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~-~~i~~l~~ 259 (504)
+.|.||+|+|||+++++|++.++ ..+..+..
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~ 33 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQ 33 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCCeEEEEe
Confidence 45789999999999999999873 23444433
No 483
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.91 E-value=0.013 Score=56.78 Aligned_cols=33 Identities=15% Similarity=0.252 Sum_probs=25.5
Q ss_pred ccccCCCCCcHHHHHHHHHHhc---------CCcEEEEeccc
Q 037859 229 YLLYGPPGTGKSTMIAAMANFL---------NYDVYDLELTT 261 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l---------~~~i~~l~~~~ 261 (504)
+.|+||||||||+++..+|... +..+++++...
T Consensus 22 ~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 22 TEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred EEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 7899999999999999997543 24666666544
No 484
>KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=95.91 E-value=0.019 Score=69.42 Aligned_cols=86 Identities=16% Similarity=0.261 Sum_probs=60.5
Q ss_pred CCccccc-cccChhHHHHHHHhh------cccccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccCChHHHHH------
Q 037859 204 HPATFDT-LAMETKKKEEIKKDL------KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQDNSELRS------ 270 (504)
Q Consensus 204 ~p~~f~~-~~~~~~~k~~i~~~l------~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~~l~~------ 270 (504)
+|..+++ +++.+.+++.+.+.. +..+||-||.|+|||++++-+|..+|.++..++...-.+-.++..
T Consensus 411 ~~~~~~~~~i~T~~vq~~la~~~~a~~~~~~pillqG~tssGKtsii~~la~~~g~~~vrinnhehtd~qeyig~y~~~~ 490 (1856)
T KOG1808|consen 411 ELTSEATHYIITPRVQKNLADLARAISSGKFPILLQGPTSSGKTSIIKELARATGKNIVRINNHEHTDLQEYIGTYVADD 490 (1856)
T ss_pred ccccccceeeccHHHHHHHHHHHHHHhcCCCCeEEecCcCcCchhHHHHHHHHhccCceehhccccchHHHHHHhhhcCC
Confidence 3444555 666676665544443 347999999999999999999999999999987766544333322
Q ss_pred ----------HHHhccCCeEEEEeccccc
Q 037859 271 ----------LLIDTSSKSILVIEDIDCS 289 (504)
Q Consensus 271 ----------l~~~~~~~~Il~iDeiD~~ 289 (504)
+...+...+.+++|++...
T Consensus 491 ~g~l~freg~LV~Alr~G~~~vlD~lnla 519 (1856)
T KOG1808|consen 491 NGDLVFREGVLVQALRNGDWIVLDELNLA 519 (1856)
T ss_pred CCCeeeehhHHHHHHHhCCEEEecccccc
Confidence 2222346789999999864
No 485
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=95.90 E-value=0.0059 Score=61.91 Aligned_cols=33 Identities=24% Similarity=0.442 Sum_probs=27.9
Q ss_pred ccccccCCCCCcHHHHHHHHHHhcCCcEEEEec
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANFLNYDVYDLEL 259 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~ 259 (504)
+-+++.||+|||||++|..+|..++..++..|.
T Consensus 5 ~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds 37 (307)
T PRK00091 5 KVIVIVGPTASGKTALAIELAKRLNGEIISADS 37 (307)
T ss_pred eEEEEECCCCcCHHHHHHHHHHhCCCcEEeccc
Confidence 457889999999999999999999877665544
No 486
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=95.88 E-value=0.0062 Score=58.71 Aligned_cols=28 Identities=43% Similarity=0.647 Sum_probs=25.1
Q ss_pred ccccCCCCCcHHHHHHHHHHhcCCcEEE
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLNYDVYD 256 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~~~i~~ 256 (504)
+.+.||+|||||++++.+|..+++++++
T Consensus 5 i~i~G~~GsGKst~~~~la~~~~~~~~~ 32 (217)
T TIGR00017 5 IAIDGPSGAGKSTVAKAVAEKLGYAYLD 32 (217)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceee
Confidence 5678999999999999999999987664
No 487
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=95.88 E-value=0.033 Score=51.28 Aligned_cols=23 Identities=17% Similarity=0.306 Sum_probs=20.0
Q ss_pred ccccccCCCCCcHHHHHHHHHHh
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~ 249 (504)
+-++|.|+||+|||+|+..+...
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~ 24 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEG 24 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45789999999999999999753
No 488
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=95.87 E-value=0.0055 Score=67.18 Aligned_cols=32 Identities=19% Similarity=0.336 Sum_probs=29.8
Q ss_pred cccccCCCCCcHHHHHHHHHHhcCCcEEEEec
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFLNYDVYDLEL 259 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~ 259 (504)
-++|.|+||||||++.+.+|..++++++++|.
T Consensus 8 ~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~ 39 (542)
T PRK14021 8 QAVIIGMMGAGKTRVGKEVAQMMRLPFADADV 39 (542)
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCCCEEEchH
Confidence 47899999999999999999999999999875
No 489
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=95.87 E-value=0.0069 Score=57.26 Aligned_cols=31 Identities=35% Similarity=0.334 Sum_probs=26.7
Q ss_pred cccccCCCCCcHHHHHHHHHHhcCCcEEEEec
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFLNYDVYDLEL 259 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~ 259 (504)
-+.|+|++|||||++++.++. +|+++++.|.
T Consensus 4 ~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D~ 34 (194)
T PRK00081 4 IIGLTGGIGSGKSTVANLFAE-LGAPVIDADA 34 (194)
T ss_pred EEEEECCCCCCHHHHHHHHHH-cCCEEEEecH
Confidence 478999999999999999998 8888776653
No 490
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=95.85 E-value=0.048 Score=50.83 Aligned_cols=22 Identities=36% Similarity=0.677 Sum_probs=18.9
Q ss_pred ccccCCCCCcHHHHHHHHHHhc
Q 037859 229 YLLYGPPGTGKSTMIAAMANFL 250 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l 250 (504)
-.++||.|+|||++..||.-.+
T Consensus 25 ~~i~G~NGsGKSnil~Ai~~~~ 46 (178)
T cd03239 25 NAIVGPNGSGKSNIVDAICFVL 46 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999996554
No 491
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.84 E-value=0.0063 Score=54.19 Aligned_cols=25 Identities=32% Similarity=0.606 Sum_probs=21.7
Q ss_pred ccccCCCCCcHHHHHHHHHHhcCCc
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLNYD 253 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~~~ 253 (504)
+.|.||+|+|||++++.|+..+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~ 26 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPN 26 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCcc
Confidence 5688999999999999999987544
No 492
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=95.83 E-value=0.048 Score=48.69 Aligned_cols=21 Identities=24% Similarity=0.442 Sum_probs=18.8
Q ss_pred ccccCCCCCcHHHHHHHHHHh
Q 037859 229 YLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~ 249 (504)
+++.|+||+|||+|+.++.+.
T Consensus 4 i~iiG~~~vGKTsl~~~~~~~ 24 (162)
T cd04138 4 LVVVGAGGVGKSALTIQLIQN 24 (162)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 678999999999999999863
No 493
>PRK08356 hypothetical protein; Provisional
Probab=95.83 E-value=0.007 Score=57.18 Aligned_cols=25 Identities=16% Similarity=0.166 Sum_probs=21.3
Q ss_pred ccccCCCCCcHHHHHHHHHHhcCCcE
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLNYDV 254 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~~~i 254 (504)
++|+||||+|||++|+.|+. .+++.
T Consensus 8 i~~~G~~gsGK~t~a~~l~~-~g~~~ 32 (195)
T PRK08356 8 VGVVGKIAAGKTTVAKFFEE-KGFCR 32 (195)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCcE
Confidence 67899999999999999964 67663
No 494
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.83 E-value=0.0079 Score=59.59 Aligned_cols=33 Identities=24% Similarity=0.180 Sum_probs=26.1
Q ss_pred cccccCCCCCcHHHHHHHHHHh---cCCcEEEEecc
Q 037859 228 GYLLYGPPGTGKSTMIAAMANF---LNYDVYDLELT 260 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~---l~~~i~~l~~~ 260 (504)
-+|++||||||||+++..+|.. .|.++.++++.
T Consensus 38 ~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 38 VINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 3889999999999999987653 26677777665
No 495
>PF13479 AAA_24: AAA domain
Probab=95.83 E-value=0.0058 Score=58.69 Aligned_cols=60 Identities=28% Similarity=0.471 Sum_probs=37.4
Q ss_pred cccccCCCCCcHHHHHHHHHHhcCCcE-EEEecc-------------ccCChHHHHHHHHhc----cCCeEEEEeccccc
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFLNYDV-YDLELT-------------TVQDNSELRSLLIDT----SSKSILVIEDIDCS 289 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l~~~i-~~l~~~-------------~~~~~~~l~~l~~~~----~~~~Il~iDeiD~~ 289 (504)
-+|+|||||+|||+++..+ +.++ ++++-+ .+.+-.++...+... ..--.|+||-++.+
T Consensus 5 ~~lIyG~~G~GKTt~a~~~----~k~l~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsis~~ 80 (213)
T PF13479_consen 5 KILIYGPPGSGKTTLAASL----PKPLFIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSISWL 80 (213)
T ss_pred EEEEECCCCCCHHHHHHhC----CCeEEEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECHHHH
Confidence 4799999999999999988 2222 122222 112334556655332 34469999999876
Q ss_pred cc
Q 037859 290 LD 291 (504)
Q Consensus 290 ~~ 291 (504)
..
T Consensus 81 ~~ 82 (213)
T PF13479_consen 81 ED 82 (213)
T ss_pred HH
Confidence 43
No 496
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=95.82 E-value=0.017 Score=52.14 Aligned_cols=21 Identities=24% Similarity=0.423 Sum_probs=18.6
Q ss_pred ccccCCCCCcHHHHHHHHHHh
Q 037859 229 YLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~ 249 (504)
+++.|+||+|||+|+.++.+.
T Consensus 3 i~v~G~~~~GKTsli~~~~~~ 23 (164)
T smart00173 3 LVVLGSGGVGKSALTIQFVQG 23 (164)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 578899999999999999763
No 497
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=95.80 E-value=0.02 Score=64.98 Aligned_cols=25 Identities=44% Similarity=0.731 Sum_probs=22.5
Q ss_pred ccc--ccccCCCCCcHHHHHHHHHHhc
Q 037859 226 KKG--YLLYGPPGTGKSTMIAAMANFL 250 (504)
Q Consensus 226 ~rg--~LL~GPpGtGKTsla~aiA~~l 250 (504)
++| +.+.||+|+||||+++.|++.+
T Consensus 505 ~~Ge~vaIvG~SGsGKSTLl~lL~gl~ 531 (711)
T TIGR00958 505 HPGEVVALVGPSGSGKSTVAALLQNLY 531 (711)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 445 8999999999999999999876
No 498
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.80 E-value=0.0077 Score=58.12 Aligned_cols=31 Identities=29% Similarity=0.457 Sum_probs=22.4
Q ss_pred ccccCCCCCcHHHHHHHHHHhc----CCcEEEEec
Q 037859 229 YLLYGPPGTGKSTMIAAMANFL----NYDVYDLEL 259 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l----~~~i~~l~~ 259 (504)
+|+.||||||||+++..++... |.+++++.+
T Consensus 22 ~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ 56 (226)
T PF06745_consen 22 VLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSF 56 (226)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEES
T ss_pred EEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEe
Confidence 8999999999999998765322 666666654
No 499
>PRK09354 recA recombinase A; Provisional
Probab=95.79 E-value=0.024 Score=58.36 Aligned_cols=65 Identities=14% Similarity=0.316 Sum_probs=39.6
Q ss_pred ccc--ccccCCCCCcHHHHHHHHHHh---cCCcEEEEecccc---------------------CChHHHHHH---HHhcc
Q 037859 226 KKG--YLLYGPPGTGKSTMIAAMANF---LNYDVYDLELTTV---------------------QDNSELRSL---LIDTS 276 (504)
Q Consensus 226 ~rg--~LL~GPpGtGKTsla~aiA~~---l~~~i~~l~~~~~---------------------~~~~~l~~l---~~~~~ 276 (504)
|+| +++|||||||||+|+-.++.. .+....+++...- .+.++...+ +....
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~s~ 137 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVRSG 137 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhcC
Confidence 455 789999999999999876533 3545555544331 111111111 22234
Q ss_pred CCeEEEEecccccc
Q 037859 277 SKSILVIEDIDCSL 290 (504)
Q Consensus 277 ~~~Il~iDeiD~~~ 290 (504)
...+|+||=+-++.
T Consensus 138 ~~~lIVIDSvaaL~ 151 (349)
T PRK09354 138 AVDLIVVDSVAALV 151 (349)
T ss_pred CCCEEEEeChhhhc
Confidence 67899999888764
No 500
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=95.77 E-value=0.031 Score=59.90 Aligned_cols=31 Identities=35% Similarity=0.464 Sum_probs=24.7
Q ss_pred ccccCCCCCcHHHHHHHHHHhc---CCcEEEEec
Q 037859 229 YLLYGPPGTGKSTMIAAMANFL---NYDVYDLEL 259 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~ 259 (504)
+|++|+||+|||+|+..+|..+ +.++++++.
T Consensus 97 ilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~ 130 (454)
T TIGR00416 97 ILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSG 130 (454)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEC
Confidence 7899999999999999987755 345666654
Done!