Query 037859
Match_columns 504
No_of_seqs 473 out of 3125
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 08:05:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037859.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037859hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_J 26S protease regulatory 100.0 7.3E-38 2.5E-42 322.7 14.1 189 200-421 166-363 (405)
2 4b4t_I 26S protease regulatory 100.0 2.6E-37 8.7E-42 319.4 13.3 193 206-421 179-397 (437)
3 4b4t_L 26S protease subunit RP 100.0 1.1E-36 3.8E-41 318.4 13.5 192 207-421 179-396 (437)
4 4b4t_M 26S protease regulatory 100.0 4E-36 1.4E-40 313.9 15.2 195 204-421 176-396 (434)
5 4b4t_K 26S protease regulatory 100.0 1.6E-35 5.5E-40 309.1 15.8 192 206-420 169-387 (428)
6 4b4t_H 26S protease regulatory 100.0 3.6E-35 1.2E-39 306.1 18.3 194 205-421 205-424 (467)
7 3cf2_A TER ATPase, transitiona 100.0 2.2E-32 7.6E-37 304.4 11.5 188 201-421 496-692 (806)
8 3cf2_A TER ATPase, transitiona 100.0 2.1E-30 7.2E-35 288.5 16.4 190 206-421 201-416 (806)
9 2x8a_A Nuclear valosin-contain 99.9 4.3E-26 1.5E-30 226.1 18.3 189 207-421 8-227 (274)
10 3cf0_A Transitional endoplasmi 99.9 2.7E-26 9.3E-31 230.5 15.0 192 205-421 11-230 (301)
11 1xwi_A SKD1 protein; VPS4B, AA 99.9 3.1E-25 1E-29 225.0 20.5 190 205-421 8-224 (322)
12 2ce7_A Cell division protein F 99.9 9.2E-26 3.1E-30 239.1 16.3 194 205-421 12-230 (476)
13 1lv7_A FTSH; alpha/beta domain 99.9 6.8E-25 2.3E-29 214.7 18.1 196 203-421 6-226 (257)
14 2qz4_A Paraplegin; AAA+, SPG7, 99.9 3.5E-25 1.2E-29 216.5 14.6 194 206-421 3-223 (262)
15 3eie_A Vacuolar protein sortin 99.9 6.5E-25 2.2E-29 222.4 16.8 191 203-420 12-228 (322)
16 3h4m_A Proteasome-activating n 99.9 3.7E-25 1.3E-29 219.5 14.0 197 202-421 10-232 (285)
17 2qp9_X Vacuolar protein sortin 99.9 2.5E-24 8.5E-29 221.2 16.2 189 205-420 47-261 (355)
18 2dhr_A FTSH; AAA+ protein, hex 99.9 8.1E-24 2.8E-28 225.4 17.2 195 204-421 26-245 (499)
19 2zan_A Vacuolar protein sortin 99.9 1.1E-23 3.6E-28 222.8 17.7 190 204-420 129-345 (444)
20 2r62_A Cell division protease 99.9 1.5E-24 5.1E-29 213.4 7.3 195 205-420 7-226 (268)
21 3hu3_A Transitional endoplasmi 99.9 1.2E-23 3.9E-28 224.4 14.6 192 204-421 199-416 (489)
22 1ixz_A ATP-dependent metallopr 99.9 5.1E-23 1.7E-27 201.0 15.0 195 204-421 11-230 (254)
23 3vfd_A Spastin; ATPase, microt 99.9 7.7E-23 2.6E-27 212.5 17.2 195 201-421 107-327 (389)
24 3t15_A Ribulose bisphosphate c 99.9 1.1E-23 3.9E-28 210.6 9.6 143 226-392 36-199 (293)
25 3d8b_A Fidgetin-like protein 1 99.9 1.3E-22 4.3E-27 208.6 16.7 191 205-421 80-296 (357)
26 1ypw_A Transitional endoplasmi 99.9 1.1E-24 3.9E-29 245.5 0.5 193 206-421 474-692 (806)
27 3b9p_A CG5977-PA, isoform A; A 99.9 2.6E-22 8.7E-27 200.3 15.5 192 204-421 16-234 (297)
28 1iy2_A ATP-dependent metallopr 99.9 5.2E-22 1.8E-26 196.7 15.7 195 204-421 35-254 (278)
29 1ypw_A Transitional endoplasmi 99.8 1.1E-19 3.9E-24 204.8 14.5 190 205-420 200-415 (806)
30 3pfi_A Holliday junction ATP-d 99.8 1.5E-18 5.1E-23 176.2 17.8 155 202-393 22-199 (338)
31 2c9o_A RUVB-like 1; hexameric 99.8 4E-21 1.4E-25 203.7 -2.2 202 206-421 34-261 (456)
32 1hqc_A RUVB; extended AAA-ATPa 99.7 1.1E-17 3.7E-22 168.4 15.1 180 203-419 6-210 (324)
33 1g41_A Heat shock protein HSLU 99.7 2.1E-18 7.2E-23 180.4 3.5 145 210-387 16-188 (444)
34 3u61_B DNA polymerase accessor 99.7 5.2E-17 1.8E-21 163.9 12.9 148 202-391 19-178 (324)
35 2chg_A Replication factor C sm 99.7 2E-16 6.9E-21 148.7 14.8 148 203-392 11-175 (226)
36 3syl_A Protein CBBX; photosynt 99.7 6.4E-17 2.2E-21 161.8 11.3 151 210-393 32-219 (309)
37 1ofh_A ATP-dependent HSL prote 99.7 2E-16 7E-21 157.7 13.7 157 210-391 16-215 (310)
38 1jbk_A CLPB protein; beta barr 99.7 8.5E-17 2.9E-21 147.8 7.6 148 204-387 17-194 (195)
39 2r44_A Uncharacterized protein 99.7 2.7E-16 9.3E-21 159.2 11.9 152 205-393 23-200 (331)
40 1njg_A DNA polymerase III subu 99.7 1.1E-15 3.6E-20 145.4 15.3 148 203-392 17-199 (250)
41 3hws_A ATP-dependent CLP prote 99.6 1.9E-16 6.5E-21 162.7 9.7 158 211-391 17-269 (363)
42 3m6a_A ATP-dependent protease 99.6 1.2E-15 4.2E-20 164.8 16.4 150 208-391 80-266 (543)
43 3uk6_A RUVB-like 2; hexameric 99.6 6.2E-16 2.1E-20 158.4 13.0 148 204-393 38-274 (368)
44 2chq_A Replication factor C sm 99.6 1.2E-15 4.2E-20 152.4 13.1 148 203-392 11-175 (319)
45 3pvs_A Replication-associated 99.6 1.1E-15 3.8E-20 161.1 13.3 145 203-392 20-179 (447)
46 1d2n_A N-ethylmaleimide-sensit 99.6 1E-15 3.6E-20 150.6 11.1 136 226-389 64-210 (272)
47 4fcw_A Chaperone protein CLPB; 99.6 2E-15 6.7E-20 150.9 12.7 169 210-419 18-253 (311)
48 1sxj_D Activator 1 41 kDa subu 99.6 3.2E-15 1.1E-19 151.8 12.5 148 203-392 31-206 (353)
49 1iqp_A RFCS; clamp loader, ext 99.6 4.7E-15 1.6E-19 148.7 12.0 148 203-392 19-183 (327)
50 1jr3_A DNA polymerase III subu 99.6 1.2E-14 4E-19 148.8 14.7 148 203-392 10-192 (373)
51 2p65_A Hypothetical protein PF 99.6 1.9E-15 6.5E-20 138.5 7.3 141 204-379 17-187 (187)
52 1sxj_B Activator 1 37 kDa subu 99.6 9.7E-15 3.3E-19 146.2 12.8 149 202-392 14-180 (323)
53 1sxj_A Activator 1 95 kDa subu 99.6 1.8E-14 6.1E-19 154.9 14.0 155 195-391 27-222 (516)
54 1g8p_A Magnesium-chelatase 38 99.5 8.3E-15 2.8E-19 148.7 9.8 151 202-391 17-232 (350)
55 1in4_A RUVB, holliday junction 99.5 7.2E-14 2.5E-18 141.9 16.6 154 201-391 17-193 (334)
56 1um8_A ATP-dependent CLP prote 99.5 5.6E-14 1.9E-18 144.8 16.0 141 227-390 73-285 (376)
57 1l8q_A Chromosomal replication 99.5 1.1E-14 3.7E-19 147.0 10.4 151 202-392 4-180 (324)
58 2v1u_A Cell division control p 99.5 3.4E-14 1.2E-18 145.5 14.1 152 207-392 17-215 (387)
59 3bos_A Putative DNA replicatio 99.5 7.9E-15 2.7E-19 140.1 8.2 153 201-392 20-188 (242)
60 1qvr_A CLPB protein; coiled co 99.5 1.7E-14 5.9E-19 164.0 10.3 153 204-392 165-346 (854)
61 3pxg_A Negative regulator of g 99.5 1.1E-13 3.8E-18 146.9 15.9 143 203-393 174-340 (468)
62 1r6b_X CLPA protein; AAA+, N-t 99.5 7E-14 2.4E-18 157.0 14.3 146 209-392 458-667 (758)
63 1r6b_X CLPA protein; AAA+, N-t 99.5 7.3E-14 2.5E-18 156.9 13.7 153 204-391 181-362 (758)
64 3pxi_A Negative regulator of g 99.5 8.7E-14 3E-18 156.3 14.3 170 208-419 490-699 (758)
65 1sxj_E Activator 1 40 kDa subu 99.5 9.9E-14 3.4E-18 141.2 13.4 176 203-420 8-237 (354)
66 3te6_A Regulatory protein SIR3 99.5 1.2E-13 4E-18 138.9 12.5 127 226-392 45-212 (318)
67 1a5t_A Delta prime, HOLB; zinc 99.5 5E-13 1.7E-17 135.7 17.0 150 226-421 24-206 (334)
68 2bjv_A PSP operon transcriptio 99.5 1.3E-13 4.5E-18 134.9 12.2 148 206-391 3-194 (265)
69 1sxj_C Activator 1 40 kDa subu 99.5 2E-13 6.7E-18 138.8 13.9 147 203-391 19-182 (340)
70 2qby_B CDC6 homolog 3, cell di 99.5 9.2E-14 3.1E-18 142.7 11.5 143 209-392 20-211 (384)
71 2z4s_A Chromosomal replication 99.5 7.4E-14 2.5E-18 147.1 10.6 153 201-392 97-277 (440)
72 3pxi_A Negative regulator of g 99.5 1.5E-13 5E-18 154.4 11.8 143 203-393 174-340 (758)
73 2qby_A CDC6 homolog 1, cell di 99.5 3.7E-13 1.3E-17 137.6 13.4 150 207-392 18-211 (386)
74 1fnn_A CDC6P, cell division co 99.5 5.8E-13 2E-17 136.7 14.7 148 208-392 16-207 (389)
75 4akg_A Glutathione S-transfera 99.4 7.9E-13 2.7E-17 162.8 17.7 156 207-392 1242-1432(2695)
76 3nbx_X ATPase RAVA; AAA+ ATPas 99.4 8.5E-13 2.9E-17 140.6 14.5 143 211-392 24-197 (500)
77 3n70_A Transport activator; si 99.4 3E-13 1E-17 120.5 7.3 77 211-289 3-88 (145)
78 2gno_A DNA polymerase III, gam 99.4 2.6E-12 8.9E-17 128.8 12.3 131 217-391 5-152 (305)
79 3f9v_A Minichromosome maintena 99.4 1.1E-13 3.7E-18 151.0 1.8 145 210-393 296-492 (595)
80 1qvr_A CLPB protein; coiled co 99.4 1.7E-12 5.7E-17 147.6 11.6 147 208-392 557-771 (854)
81 3co5_A Putative two-component 99.3 5.7E-13 2E-17 118.4 4.5 75 212-289 7-87 (143)
82 1ojl_A Transcriptional regulat 99.3 4.8E-12 1.6E-16 126.8 11.7 144 211-391 4-190 (304)
83 3ec2_A DNA replication protein 99.1 2.4E-11 8.1E-16 111.7 5.2 82 205-288 6-111 (180)
84 1w5s_A Origin recognition comp 99.1 3.1E-10 1.1E-14 117.3 12.2 151 209-391 22-228 (412)
85 3vkg_A Dynein heavy chain, cyt 99.0 1.4E-09 4.7E-14 135.2 16.0 155 207-391 1279-1469(3245)
86 3k1j_A LON protease, ATP-depen 99.0 4.4E-10 1.5E-14 122.9 9.0 50 203-252 35-86 (604)
87 1svm_A Large T antigen; AAA+ f 99.0 2.4E-10 8.2E-15 117.5 5.8 116 226-377 169-284 (377)
88 1tue_A Replication protein E1; 99.0 3.8E-10 1.3E-14 105.6 5.8 109 227-378 59-179 (212)
89 2w58_A DNAI, primosome compone 99.0 3.1E-10 1.1E-14 106.0 5.2 85 205-289 21-127 (202)
90 4akg_A Glutathione S-transfera 98.8 1.5E-08 5.3E-13 125.2 14.9 124 226-387 645-789 (2695)
91 2r2a_A Uncharacterized protein 98.8 6.9E-09 2.4E-13 97.3 9.0 119 228-381 7-156 (199)
92 2qgz_A Helicase loader, putati 98.8 1.8E-09 6.1E-14 108.3 3.8 84 205-288 120-225 (308)
93 2kjq_A DNAA-related protein; s 98.8 5.7E-09 1.9E-13 93.3 5.5 57 226-289 36-95 (149)
94 2fna_A Conserved hypothetical 98.7 1.3E-07 4.4E-12 95.1 12.8 52 209-261 13-65 (357)
95 2vhj_A Ntpase P4, P4; non- hyd 98.6 9E-09 3.1E-13 102.8 3.1 110 227-363 124-242 (331)
96 1u0j_A DNA replication protein 98.6 6E-08 2E-12 94.5 8.6 56 226-288 104-159 (267)
97 3f8t_A Predicted ATPase involv 98.6 2.4E-08 8.2E-13 104.2 4.8 130 211-382 215-385 (506)
98 2qen_A Walker-type ATPase; unk 98.6 9.2E-07 3.2E-11 88.6 15.3 50 209-260 12-63 (350)
99 3cmw_A Protein RECA, recombina 98.5 7.8E-08 2.7E-12 114.4 6.9 110 226-356 1080-1218(1706)
100 1ny5_A Transcriptional regulat 98.5 6.5E-07 2.2E-11 92.4 12.8 145 211-392 139-326 (387)
101 3vkg_A Dynein heavy chain, cyt 98.5 4.7E-07 1.6E-11 112.9 12.8 129 226-392 604-754 (3245)
102 3dzd_A Transcriptional regulat 98.4 9.5E-07 3.2E-11 90.6 12.3 151 226-420 152-339 (368)
103 1jr3_D DNA polymerase III, del 98.2 5.2E-06 1.8E-10 83.8 11.4 128 220-392 12-156 (343)
104 3cmu_A Protein RECA, recombina 98.2 2.2E-06 7.4E-11 103.3 7.9 109 226-355 1427-1562(2050)
105 1ye8_A Protein THEP1, hypothet 98.0 1.4E-05 4.7E-10 73.3 9.3 26 229-254 3-28 (178)
106 1z6t_A APAF-1, apoptotic prote 97.7 0.00023 8E-09 76.9 13.7 41 208-248 123-169 (591)
107 3trf_A Shikimate kinase, SK; a 97.6 2.4E-05 8.3E-10 71.2 2.6 33 226-258 5-37 (185)
108 1qhx_A CPT, protein (chloramph 97.5 4.6E-05 1.6E-09 68.8 3.9 33 227-259 4-36 (178)
109 2cvh_A DNA repair and recombin 97.5 0.0003 1E-08 65.4 9.6 33 229-261 23-55 (220)
110 2orw_A Thymidine kinase; TMTK, 97.5 5.5E-05 1.9E-09 69.6 3.3 30 228-257 5-37 (184)
111 3vaa_A Shikimate kinase, SK; s 97.4 4.4E-05 1.5E-09 70.7 2.7 32 227-258 26-57 (199)
112 3e1s_A Exodeoxyribonuclease V, 97.4 0.0003 1E-08 76.1 9.2 50 210-259 187-240 (574)
113 3kb2_A SPBC2 prophage-derived 97.4 7.3E-05 2.5E-09 66.8 3.1 31 228-258 3-33 (173)
114 1via_A Shikimate kinase; struc 97.4 6.1E-05 2.1E-09 68.1 2.5 30 228-257 6-35 (175)
115 3sfz_A APAF-1, apoptotic pepti 97.4 0.0012 4E-08 77.1 14.0 57 205-261 120-189 (1249)
116 3iij_A Coilin-interacting nucl 97.3 7.2E-05 2.5E-09 67.9 2.7 32 226-257 11-42 (180)
117 2iyv_A Shikimate kinase, SK; t 97.3 7.9E-05 2.7E-09 67.8 2.8 31 228-258 4-34 (184)
118 1zuh_A Shikimate kinase; alpha 97.3 7.8E-05 2.7E-09 66.8 2.6 32 227-258 8-39 (168)
119 1kag_A SKI, shikimate kinase I 97.3 0.00012 4.1E-09 65.7 3.7 30 227-256 5-34 (173)
120 3upu_A ATP-dependent DNA helic 97.3 0.00042 1.5E-08 72.8 8.3 57 201-259 16-82 (459)
121 2ze6_A Isopentenyl transferase 97.2 0.00013 4.3E-09 70.6 3.2 32 228-259 3-34 (253)
122 1e6c_A Shikimate kinase; phosp 97.2 0.00011 3.7E-09 65.9 2.5 30 228-257 4-33 (173)
123 1y63_A LMAJ004144AAA protein; 97.2 9.5E-05 3.3E-09 67.6 2.2 31 227-257 11-42 (184)
124 2rhm_A Putative kinase; P-loop 97.2 9E-05 3.1E-09 67.6 2.0 30 227-256 6-35 (193)
125 3lw7_A Adenylate kinase relate 97.2 0.00013 4.5E-09 65.0 2.6 29 228-257 3-31 (179)
126 2cdn_A Adenylate kinase; phosp 97.2 0.00014 4.7E-09 67.3 2.6 31 227-257 21-51 (201)
127 1tev_A UMP-CMP kinase; ploop, 97.2 0.00013 4.6E-09 66.4 2.4 31 227-257 4-34 (196)
128 2pt5_A Shikimate kinase, SK; a 97.1 0.00016 5.6E-09 64.5 2.6 29 229-257 3-31 (168)
129 1gvn_B Zeta; postsegregational 97.1 0.00028 9.7E-09 69.5 4.5 34 226-259 33-66 (287)
130 3t61_A Gluconokinase; PSI-biol 97.1 0.00019 6.7E-09 66.3 3.1 31 227-257 19-49 (202)
131 3cm0_A Adenylate kinase; ATP-b 97.1 0.00014 4.7E-09 66.1 1.9 30 228-257 6-35 (186)
132 2c95_A Adenylate kinase 1; tra 97.1 0.00016 5.5E-09 66.1 2.2 31 227-257 10-40 (196)
133 1ly1_A Polynucleotide kinase; 97.1 0.00012 4E-09 66.0 1.3 28 227-254 3-31 (181)
134 3cmu_A Protein RECA, recombina 97.1 0.0012 4E-08 80.0 10.1 67 224-290 1077-1172(2050)
135 3hr8_A Protein RECA; alpha and 97.1 0.0014 4.7E-08 66.6 9.2 65 226-290 59-152 (356)
136 1kht_A Adenylate kinase; phosp 97.1 0.00015 5.1E-09 65.9 1.8 24 228-251 5-28 (192)
137 3dl0_A Adenylate kinase; phosp 97.1 0.00021 7.1E-09 66.8 2.8 29 229-257 3-31 (216)
138 2bwj_A Adenylate kinase 5; pho 97.1 0.00017 6E-09 66.0 2.2 32 226-257 12-43 (199)
139 1qf9_A UMP/CMP kinase, protein 97.0 0.00018 6.2E-09 65.4 2.0 31 227-257 7-37 (194)
140 1aky_A Adenylate kinase; ATP:A 97.0 0.00022 7.5E-09 66.9 2.5 30 228-257 6-35 (220)
141 3fb4_A Adenylate kinase; psych 97.0 0.00023 8E-09 66.4 2.6 29 229-257 3-31 (216)
142 1knq_A Gluconate kinase; ALFA/ 97.0 0.00026 9E-09 63.7 2.8 29 228-256 10-38 (175)
143 1zd8_A GTP:AMP phosphotransfer 97.0 0.00023 7.7E-09 67.3 2.3 31 227-257 8-38 (227)
144 1ukz_A Uridylate kinase; trans 97.0 0.00027 9.1E-09 65.3 2.7 31 227-257 16-46 (203)
145 2p5t_B PEZT; postsegregational 97.0 0.00035 1.2E-08 67.3 3.6 36 226-261 32-67 (253)
146 2vli_A Antibiotic resistance p 97.0 0.00024 8.2E-09 64.3 2.2 29 227-255 6-34 (183)
147 1g5t_A COB(I)alamin adenosyltr 97.0 0.0018 6E-08 60.0 7.9 110 227-377 28-179 (196)
148 3be4_A Adenylate kinase; malar 97.0 0.00025 8.4E-09 66.6 2.2 29 229-257 8-36 (217)
149 2a5y_B CED-4; apoptosis; HET: 97.0 0.017 5.7E-07 61.9 16.7 36 213-248 132-174 (549)
150 1ak2_A Adenylate kinase isoenz 96.9 0.00029 1E-08 66.8 2.6 31 227-257 17-47 (233)
151 1vt4_I APAF-1 related killer D 96.9 0.0061 2.1E-07 69.5 13.4 50 212-261 131-191 (1221)
152 1zp6_A Hypothetical protein AT 96.9 0.00035 1.2E-08 63.7 2.8 31 228-258 11-41 (191)
153 2pbr_A DTMP kinase, thymidylat 96.9 0.00053 1.8E-08 62.4 3.7 31 229-259 3-36 (195)
154 3crm_A TRNA delta(2)-isopenten 96.9 0.00042 1.4E-08 69.3 3.1 34 226-259 5-38 (323)
155 4eun_A Thermoresistant glucoki 96.9 0.00049 1.7E-08 63.6 3.3 30 227-256 30-59 (200)
156 1zak_A Adenylate kinase; ATP:A 96.9 0.00024 8.2E-09 66.8 1.2 30 227-256 6-35 (222)
157 1e4v_A Adenylate kinase; trans 96.9 0.00034 1.2E-08 65.4 2.2 29 229-257 3-31 (214)
158 2r8r_A Sensor protein; KDPD, P 96.9 0.0074 2.5E-07 57.1 11.4 33 228-260 8-43 (228)
159 2pez_A Bifunctional 3'-phospho 96.8 0.00067 2.3E-08 61.3 3.7 30 229-258 8-40 (179)
160 2zr9_A Protein RECA, recombina 96.8 0.0018 6.2E-08 65.6 7.3 65 226-290 59-152 (349)
161 4b3f_X DNA-binding protein smu 96.8 0.001 3.6E-08 72.9 5.9 54 207-260 184-242 (646)
162 2z43_A DNA repair and recombin 96.8 0.0015 5.3E-08 65.2 6.5 34 228-261 109-151 (324)
163 2if2_A Dephospho-COA kinase; a 96.8 0.00044 1.5E-08 63.9 2.3 29 229-258 4-32 (204)
164 3umf_A Adenylate kinase; rossm 96.8 0.00056 1.9E-08 64.6 3.0 30 226-255 29-58 (217)
165 2xb4_A Adenylate kinase; ATP-b 96.8 0.00062 2.1E-08 64.2 3.3 29 229-257 3-31 (223)
166 1xp8_A RECA protein, recombina 96.8 0.0038 1.3E-07 63.5 9.4 63 228-290 76-165 (366)
167 3tlx_A Adenylate kinase 2; str 96.8 0.00047 1.6E-08 66.1 2.4 31 227-257 30-60 (243)
168 2plr_A DTMP kinase, probable t 96.8 0.0011 3.6E-08 61.2 4.7 30 228-257 6-37 (213)
169 2jaq_A Deoxyguanosine kinase; 96.7 0.00063 2.2E-08 62.4 3.0 27 229-255 3-29 (205)
170 2fz4_A DNA repair protein RAD2 96.7 0.0025 8.6E-08 60.7 7.4 48 211-258 92-140 (237)
171 2v54_A DTMP kinase, thymidylat 96.7 0.00069 2.4E-08 62.3 3.2 33 228-260 6-39 (204)
172 1cke_A CK, MSSA, protein (cyti 96.7 0.00069 2.4E-08 63.5 3.3 29 228-256 7-35 (227)
173 2z0h_A DTMP kinase, thymidylat 96.7 0.00087 3E-08 61.2 3.6 31 229-259 3-36 (197)
174 3sr0_A Adenylate kinase; phosp 96.7 0.00077 2.6E-08 63.1 3.2 27 229-255 3-29 (206)
175 3nwj_A ATSK2; P loop, shikimat 96.7 0.00065 2.2E-08 65.5 2.7 32 227-258 49-80 (250)
176 3uie_A Adenylyl-sulfate kinase 96.7 0.00097 3.3E-08 61.6 3.7 32 227-258 26-60 (200)
177 1jjv_A Dephospho-COA kinase; P 96.7 0.00062 2.1E-08 63.0 2.4 30 228-258 4-33 (206)
178 1nks_A Adenylate kinase; therm 96.7 0.00046 1.6E-08 62.6 1.4 23 229-251 4-26 (194)
179 2iut_A DNA translocase FTSK; n 96.6 0.016 5.5E-07 62.1 13.4 43 344-388 376-420 (574)
180 3ake_A Cytidylate kinase; CMP 96.6 0.00071 2.4E-08 62.3 2.5 31 228-258 4-34 (208)
181 2b8t_A Thymidine kinase; deoxy 96.6 0.0031 1.1E-07 59.7 7.0 61 229-289 15-101 (223)
182 3a4m_A L-seryl-tRNA(SEC) kinas 96.6 0.001 3.6E-08 64.2 3.8 31 228-258 6-39 (260)
183 3lda_A DNA repair protein RAD5 96.6 0.0036 1.2E-07 64.5 8.0 33 229-261 181-222 (400)
184 1v5w_A DMC1, meiotic recombina 96.6 0.0038 1.3E-07 62.9 7.8 33 229-261 125-166 (343)
185 2grj_A Dephospho-COA kinase; T 96.6 0.0008 2.7E-08 62.2 2.5 31 228-258 14-44 (192)
186 3r20_A Cytidylate kinase; stru 96.6 0.001 3.5E-08 63.4 3.3 31 227-257 10-40 (233)
187 1u94_A RECA protein, recombina 96.6 0.0035 1.2E-07 63.6 7.4 64 227-290 64-154 (356)
188 2bbw_A Adenylate kinase 4, AK4 96.5 0.0011 3.9E-08 63.2 2.9 29 227-255 28-56 (246)
189 3io5_A Recombination and repai 96.5 0.007 2.4E-07 60.2 8.4 65 226-290 27-124 (333)
190 1g41_A Heat shock protein HSLU 96.4 0.0041 1.4E-07 64.8 7.0 99 264-388 236-346 (444)
191 2wwf_A Thymidilate kinase, put 96.4 0.00051 1.8E-08 63.6 0.0 27 227-253 11-37 (212)
192 1uf9_A TT1252 protein; P-loop, 96.4 0.0011 3.6E-08 60.9 2.2 31 227-258 9-39 (203)
193 2h92_A Cytidylate kinase; ross 96.4 0.0015 5E-08 61.0 3.0 31 228-258 5-35 (219)
194 3a8t_A Adenylate isopentenyltr 96.3 0.0012 4.2E-08 66.2 2.2 34 228-261 42-75 (339)
195 1kao_A RAP2A; GTP-binding prot 96.3 0.011 3.8E-07 51.4 8.3 22 228-249 5-26 (167)
196 2bdt_A BH3686; alpha-beta prot 96.3 0.0019 6.5E-08 58.8 3.4 25 228-252 4-28 (189)
197 1vht_A Dephospho-COA kinase; s 96.3 0.0015 5.1E-08 61.0 2.6 30 228-258 6-35 (218)
198 1n0w_A DNA repair protein RAD5 96.3 0.0042 1.4E-07 58.5 5.8 33 229-261 27-68 (243)
199 4e22_A Cytidylate kinase; P-lo 96.3 0.002 6.9E-08 61.9 3.5 29 228-256 29-57 (252)
200 2ga8_A Hypothetical 39.9 kDa p 96.3 0.001 3.5E-08 67.2 1.3 29 228-256 26-54 (359)
201 2qmh_A HPR kinase/phosphorylas 96.3 0.0015 5.1E-08 60.6 2.2 30 226-256 34-63 (205)
202 2yvu_A Probable adenylyl-sulfa 96.2 0.0026 8.7E-08 57.8 3.7 31 228-258 15-48 (186)
203 2qor_A Guanylate kinase; phosp 96.2 0.0018 6.2E-08 59.9 2.8 26 226-251 12-37 (204)
204 2c9o_A RUVB-like 1; hexameric 96.2 0.009 3.1E-07 62.5 8.2 71 278-391 296-379 (456)
205 1nn5_A Similar to deoxythymidy 96.2 0.00082 2.8E-08 62.2 0.1 25 227-251 10-34 (215)
206 1uj2_A Uridine-cytidine kinase 96.2 0.002 6.8E-08 61.8 2.8 26 228-253 24-49 (252)
207 1ltq_A Polynucleotide kinase; 96.2 0.0013 4.5E-08 64.5 1.5 29 227-255 3-32 (301)
208 3foz_A TRNA delta(2)-isopenten 96.2 0.0023 7.7E-08 63.5 3.0 34 226-259 10-43 (316)
209 4a74_A DNA repair and recombin 96.1 0.0056 1.9E-07 57.0 5.6 25 226-250 23-49 (231)
210 1q3t_A Cytidylate kinase; nucl 96.1 0.0026 8.8E-08 60.3 3.2 30 228-257 18-47 (236)
211 2qt1_A Nicotinamide riboside k 96.1 0.0016 5.4E-08 60.3 1.7 29 229-257 24-53 (207)
212 1z0j_A RAB-22, RAS-related pro 96.1 0.0061 2.1E-07 53.4 5.4 23 228-250 8-30 (170)
213 2ius_A DNA translocase FTSK; n 96.1 0.03 1E-06 59.4 11.4 41 346-388 332-374 (512)
214 3d3q_A TRNA delta(2)-isopenten 96.0 0.0026 9E-08 63.9 2.8 33 227-259 8-40 (340)
215 3fdi_A Uncharacterized protein 96.0 0.0028 9.5E-08 58.9 2.6 29 228-256 8-36 (201)
216 1kgd_A CASK, peripheral plasma 96.0 0.0028 9.6E-08 57.5 2.6 25 227-251 6-30 (180)
217 2f6r_A COA synthase, bifunctio 95.9 0.0024 8.1E-08 62.6 2.0 30 227-257 76-105 (281)
218 1m7g_A Adenylylsulfate kinase; 95.9 0.0032 1.1E-07 58.5 2.8 31 228-258 27-61 (211)
219 2j41_A Guanylate kinase; GMP, 95.9 0.0027 9.1E-08 58.3 2.2 23 228-250 8-30 (207)
220 3zvl_A Bifunctional polynucleo 95.9 0.0019 6.6E-08 66.9 1.3 31 226-256 258-288 (416)
221 2ce2_X GTPase HRAS; signaling 95.9 0.016 5.5E-07 50.2 7.2 22 228-249 5-26 (166)
222 1u8z_A RAS-related protein RAL 95.8 0.021 7.1E-07 49.6 7.7 22 228-249 6-27 (168)
223 3exa_A TRNA delta(2)-isopenten 95.8 0.0035 1.2E-07 62.2 2.8 32 228-259 5-36 (322)
224 3tr0_A Guanylate kinase, GMP k 95.8 0.0034 1.2E-07 57.6 2.5 24 228-251 9-32 (205)
225 1ek0_A Protein (GTP-binding pr 95.8 0.0086 2.9E-07 52.3 5.1 22 228-249 5-26 (170)
226 1ex7_A Guanylate kinase; subst 95.8 0.0052 1.8E-07 56.4 3.7 26 227-252 2-27 (186)
227 3cmw_A Protein RECA, recombina 95.8 0.011 3.6E-07 71.0 7.2 65 226-290 34-125 (1706)
228 2w0m_A SSO2452; RECA, SSPF, un 95.8 0.0053 1.8E-07 57.1 3.8 31 228-258 25-58 (235)
229 3tau_A Guanylate kinase, GMP k 95.8 0.0033 1.1E-07 58.4 2.3 24 228-251 10-33 (208)
230 1w4r_A Thymidine kinase; type 95.8 0.0091 3.1E-07 55.1 5.2 32 227-258 21-55 (195)
231 1rz3_A Hypothetical protein rb 95.8 0.0078 2.7E-07 55.5 4.8 32 229-260 25-59 (201)
232 2px0_A Flagellar biosynthesis 95.8 0.013 4.4E-07 57.8 6.6 34 227-260 106-143 (296)
233 3a00_A Guanylate kinase, GMP k 95.7 0.0041 1.4E-07 56.6 2.7 25 227-251 2-26 (186)
234 2a9k_A RAS-related protein RAL 95.7 0.026 9E-07 50.1 8.0 23 227-249 19-41 (187)
235 3kw6_A 26S protease regulatory 95.7 0.0013 4.4E-08 51.4 -0.7 46 376-421 1-47 (78)
236 2oil_A CATX-8, RAS-related pro 95.7 0.011 3.8E-07 53.4 5.4 23 227-249 26-48 (193)
237 4dsu_A GTPase KRAS, isoform 2B 95.7 0.017 5.9E-07 51.5 6.7 22 228-249 6-27 (189)
238 2gk6_A Regulator of nonsense t 95.7 0.0057 2E-07 66.7 4.0 48 212-259 180-232 (624)
239 2bov_A RAla, RAS-related prote 95.7 0.03 1E-06 50.8 8.3 22 228-249 16-37 (206)
240 3bc1_A RAS-related protein RAB 95.7 0.019 6.5E-07 51.3 6.8 23 227-249 12-34 (195)
241 2efe_B Small GTP-binding prote 95.7 0.014 4.8E-07 51.8 5.9 22 228-249 14-35 (181)
242 3q72_A GTP-binding protein RAD 95.7 0.011 3.7E-07 51.7 5.0 20 229-248 5-24 (166)
243 1r8s_A ADP-ribosylation factor 95.7 0.018 6.1E-07 50.1 6.4 21 229-249 3-23 (164)
244 1z0f_A RAB14, member RAS oncog 95.6 0.016 5.3E-07 51.2 6.0 23 227-249 16-38 (179)
245 3tkl_A RAS-related protein RAB 95.6 0.014 4.7E-07 52.6 5.7 23 227-249 17-39 (196)
246 1z6g_A Guanylate kinase; struc 95.6 0.0048 1.6E-07 57.9 2.7 23 228-250 25-47 (218)
247 1r2q_A RAS-related protein RAB 95.6 0.013 4.6E-07 51.1 5.3 21 228-248 8-28 (170)
248 2eyu_A Twitching motility prot 95.6 0.0067 2.3E-07 58.7 3.6 22 229-250 28-49 (261)
249 3jvv_A Twitching mobility prot 95.6 0.0087 3E-07 60.7 4.6 45 204-250 102-147 (356)
250 1nrj_B SR-beta, signal recogni 95.6 0.0099 3.4E-07 54.9 4.7 24 227-250 13-36 (218)
251 3con_A GTPase NRAS; structural 95.5 0.02 6.7E-07 51.5 6.3 22 228-249 23-44 (190)
252 3asz_A Uridine kinase; cytidin 95.5 0.0039 1.3E-07 57.7 1.6 23 229-251 9-31 (211)
253 3t1o_A Gliding protein MGLA; G 95.5 0.038 1.3E-06 49.5 8.3 23 228-250 16-38 (198)
254 3gmt_A Adenylate kinase; ssgci 95.5 0.0066 2.3E-07 57.6 3.1 29 229-257 11-39 (230)
255 2erx_A GTP-binding protein DI- 95.5 0.015 5.1E-07 50.9 5.3 21 228-248 5-25 (172)
256 2v3c_C SRP54, signal recogniti 95.4 0.011 3.6E-07 61.6 4.8 34 227-260 100-136 (432)
257 2nzj_A GTP-binding protein REM 95.4 0.02 6.7E-07 50.4 5.9 22 228-249 6-27 (175)
258 3c8u_A Fructokinase; YP_612366 95.4 0.005 1.7E-07 57.1 2.0 23 229-251 25-47 (208)
259 1c1y_A RAS-related protein RAP 95.4 0.013 4.5E-07 51.0 4.7 22 228-249 5-26 (167)
260 1c9k_A COBU, adenosylcobinamid 95.4 0.0069 2.3E-07 55.3 2.8 33 229-262 2-34 (180)
261 1lvg_A Guanylate kinase, GMP k 95.4 0.006 2.1E-07 56.3 2.5 25 227-251 5-29 (198)
262 1x3s_A RAS-related protein RAB 95.4 0.026 8.8E-07 50.7 6.7 23 227-249 16-38 (195)
263 1p9r_A General secretion pathw 95.4 0.011 3.9E-07 61.1 4.8 47 205-251 143-192 (418)
264 1x6v_B Bifunctional 3'-phospho 95.4 0.0074 2.5E-07 65.6 3.4 31 228-258 54-87 (630)
265 2dr3_A UPF0273 protein PH0284; 95.4 0.0089 3E-07 56.3 3.6 32 229-260 26-60 (247)
266 3ney_A 55 kDa erythrocyte memb 95.4 0.0065 2.2E-07 56.3 2.6 26 226-251 19-44 (197)
267 1gtv_A TMK, thymidylate kinase 95.4 0.0027 9.3E-08 58.7 -0.1 24 229-252 3-26 (214)
268 1pzn_A RAD51, DNA repair and r 95.3 0.016 5.5E-07 58.5 5.5 25 226-250 129-155 (349)
269 3b85_A Phosphate starvation-in 95.3 0.0064 2.2E-07 56.8 2.3 30 220-249 14-45 (208)
270 2v9p_A Replication protein E1; 95.3 0.0087 3E-07 59.3 3.3 25 226-250 124-150 (305)
271 2wjy_A Regulator of nonsense t 95.3 0.0095 3.3E-07 66.8 4.0 39 212-250 356-395 (800)
272 2dyk_A GTP-binding protein; GT 95.3 0.026 8.8E-07 48.9 6.0 22 228-249 3-24 (161)
273 4eaq_A DTMP kinase, thymidylat 95.3 0.0077 2.6E-07 57.0 2.7 29 229-257 29-59 (229)
274 3hdt_A Putative kinase; struct 95.2 0.0068 2.3E-07 57.3 2.3 29 228-256 16-44 (223)
275 1znw_A Guanylate kinase, GMP k 95.2 0.0077 2.6E-07 55.8 2.5 23 229-251 23-45 (207)
276 3dz8_A RAS-related protein RAB 95.2 0.017 5.9E-07 52.1 4.8 23 228-250 25-47 (191)
277 2ehv_A Hypothetical protein PH 95.2 0.0071 2.4E-07 57.1 2.2 19 229-247 33-51 (251)
278 1htw_A HI0065; nucleotide-bind 95.1 0.0084 2.9E-07 53.4 2.5 25 226-250 31-57 (158)
279 2i1q_A DNA repair and recombin 95.1 0.018 6.1E-07 57.2 5.0 21 229-249 101-121 (322)
280 1zbd_A Rabphilin-3A; G protein 95.1 0.028 9.6E-07 51.1 6.0 22 228-249 10-31 (203)
281 4gp7_A Metallophosphoesterase; 95.1 0.0082 2.8E-07 53.9 2.3 18 229-246 12-29 (171)
282 1wms_A RAB-9, RAB9, RAS-relate 95.1 0.017 5.7E-07 51.1 4.2 22 228-249 9-30 (177)
283 2hxs_A RAB-26, RAS-related pro 95.0 0.022 7.6E-07 50.3 5.0 21 228-248 8-28 (178)
284 2i3b_A HCR-ntpase, human cance 95.0 0.009 3.1E-07 54.9 2.3 23 228-250 3-25 (189)
285 2f7s_A C25KG, RAS-related prot 95.0 0.042 1.4E-06 50.5 6.9 22 228-249 27-48 (217)
286 2bme_A RAB4A, RAS-related prot 95.0 0.018 6.1E-07 51.4 4.2 22 228-249 12-33 (186)
287 3kkq_A RAS-related protein M-R 94.9 0.028 9.5E-07 50.0 5.4 22 228-249 20-41 (183)
288 2xzl_A ATP-dependent helicase 94.9 0.013 4.6E-07 65.6 4.0 49 212-260 360-413 (802)
289 2fg5_A RAB-22B, RAS-related pr 94.9 0.021 7.1E-07 51.7 4.6 23 227-249 24-46 (192)
290 2p5s_A RAS and EF-hand domain 94.9 0.029 9.8E-07 51.0 5.5 23 227-249 29-51 (199)
291 3eph_A TRNA isopentenyltransfe 94.9 0.0092 3.1E-07 61.3 2.3 31 228-258 4-34 (409)
292 2hup_A RAS-related protein RAB 94.9 0.039 1.3E-06 50.4 6.4 23 227-249 30-52 (201)
293 3q85_A GTP-binding protein REM 94.9 0.014 4.9E-07 51.1 3.2 20 229-248 5-24 (169)
294 2zts_A Putative uncharacterize 94.9 0.016 5.6E-07 54.5 3.8 32 229-260 33-68 (251)
295 3tqf_A HPR(Ser) kinase; transf 94.8 0.0089 3E-07 54.1 1.7 27 226-253 16-42 (181)
296 2h57_A ADP-ribosylation factor 94.8 0.011 3.9E-07 53.2 2.4 23 228-250 23-45 (190)
297 1zd9_A ADP-ribosylation factor 94.8 0.021 7E-07 51.5 4.2 23 227-249 23-45 (188)
298 1s96_A Guanylate kinase, GMP k 94.8 0.012 4E-07 55.4 2.5 24 228-251 18-41 (219)
299 1fzq_A ADP-ribosylation factor 94.8 0.023 8E-07 50.9 4.4 22 228-249 18-39 (181)
300 1nlf_A Regulatory protein REPA 94.7 0.0097 3.3E-07 57.8 1.9 23 228-250 32-54 (279)
301 3oes_A GTPase rhebl1; small GT 94.7 0.026 8.9E-07 51.4 4.7 23 227-249 25-47 (201)
302 1sky_E F1-ATPase, F1-ATP synth 94.7 0.034 1.2E-06 58.2 6.0 22 229-250 154-175 (473)
303 1w36_D RECD, exodeoxyribonucle 94.7 0.017 5.7E-07 62.8 3.8 37 214-250 151-188 (608)
304 3v9p_A DTMP kinase, thymidylat 94.7 0.024 8.1E-07 53.7 4.4 32 227-258 24-64 (227)
305 1z06_A RAS-related protein RAB 94.7 0.043 1.5E-06 49.3 6.0 22 227-248 21-42 (189)
306 2fh5_B SR-beta, signal recogni 94.7 0.031 1.1E-06 51.3 5.1 23 227-249 8-30 (214)
307 2gf0_A GTP-binding protein DI- 94.6 0.031 1E-06 50.4 4.9 21 228-248 10-30 (199)
308 2y8e_A RAB-protein 6, GH09086P 94.6 0.019 6.5E-07 50.6 3.5 22 228-249 16-37 (179)
309 2axn_A 6-phosphofructo-2-kinas 94.6 0.017 5.8E-07 61.6 3.6 33 226-258 35-70 (520)
310 2fn4_A P23, RAS-related protei 94.6 0.019 6.4E-07 50.8 3.4 23 227-249 10-32 (181)
311 2atv_A RERG, RAS-like estrogen 94.6 0.035 1.2E-06 50.3 5.3 23 227-249 29-51 (196)
312 2xau_A PRE-mRNA-splicing facto 94.6 0.073 2.5E-06 59.5 8.9 33 217-249 98-132 (773)
313 2g6b_A RAS-related protein RAB 94.6 0.045 1.6E-06 48.3 5.9 22 228-249 12-33 (180)
314 4f4c_A Multidrug resistance pr 94.6 0.035 1.2E-06 65.7 6.5 23 228-250 1107-1129(1321)
315 1upt_A ARL1, ADP-ribosylation 94.6 0.016 5.6E-07 50.7 2.8 21 228-248 9-29 (171)
316 1cr0_A DNA primase/helicase; R 94.6 0.011 3.8E-07 57.8 1.9 31 229-259 38-72 (296)
317 2jeo_A Uridine-cytidine kinase 94.5 0.014 4.6E-07 55.6 2.4 28 226-253 23-52 (245)
318 3clv_A RAB5 protein, putative; 94.5 0.028 9.5E-07 50.5 4.4 22 228-249 9-30 (208)
319 4edh_A DTMP kinase, thymidylat 94.5 0.033 1.1E-06 52.0 5.0 30 229-258 9-41 (213)
320 2ewv_A Twitching motility prot 94.5 0.012 4E-07 60.1 1.9 43 205-250 116-160 (372)
321 3kta_A Chromosome segregation 94.5 0.015 5.1E-07 52.3 2.4 23 229-251 29-51 (182)
322 2krk_A 26S protease regulatory 94.4 0.014 4.7E-07 46.5 1.8 47 375-421 8-55 (86)
323 2il1_A RAB12; G-protein, GDP, 94.4 0.028 9.5E-07 50.9 4.1 22 227-248 27-48 (192)
324 2ew1_A RAS-related protein RAB 94.4 0.027 9.2E-07 51.7 4.0 23 227-249 27-49 (201)
325 3lnc_A Guanylate kinase, GMP k 94.4 0.0098 3.3E-07 56.0 1.0 23 228-250 29-52 (231)
326 1m8p_A Sulfate adenylyltransfe 94.4 0.017 5.7E-07 62.3 2.9 30 229-258 399-432 (573)
327 1xjc_A MOBB protein homolog; s 94.4 0.027 9.3E-07 50.8 3.9 32 228-259 6-40 (169)
328 3kl4_A SRP54, signal recogniti 94.4 0.022 7.7E-07 59.1 3.8 35 226-260 97-134 (433)
329 1a7j_A Phosphoribulokinase; tr 94.4 0.011 3.7E-07 58.1 1.3 35 229-263 8-45 (290)
330 4dkx_A RAS-related protein RAB 94.4 0.042 1.4E-06 51.4 5.3 20 229-248 16-35 (216)
331 2gf9_A RAS-related protein RAB 94.3 0.023 7.9E-07 51.1 3.3 23 227-249 23-45 (189)
332 2bcg_Y Protein YP2, GTP-bindin 94.3 0.023 7.7E-07 51.9 3.2 22 228-249 10-31 (206)
333 3thx_B DNA mismatch repair pro 94.3 0.057 2E-06 61.2 7.1 22 227-248 674-695 (918)
334 1vma_A Cell division protein F 94.3 0.024 8.3E-07 56.1 3.6 34 227-260 105-141 (306)
335 2a5j_A RAS-related protein RAB 94.2 0.029 1E-06 50.5 3.8 23 227-249 22-44 (191)
336 1zj6_A ADP-ribosylation factor 94.2 0.03 1E-06 50.2 3.8 22 227-248 17-38 (187)
337 1wb9_A DNA mismatch repair pro 94.2 0.1 3.4E-06 58.5 8.7 23 227-249 608-630 (800)
338 2oap_1 GSPE-2, type II secreti 94.2 0.023 8E-07 60.3 3.4 39 213-251 245-285 (511)
339 1p5z_B DCK, deoxycytidine kina 94.1 0.01 3.5E-07 57.1 0.6 27 228-254 26-53 (263)
340 2fu5_C RAS-related protein RAB 94.1 0.021 7E-07 50.9 2.5 21 228-248 10-30 (183)
341 3dm5_A SRP54, signal recogniti 94.1 0.027 9.1E-07 58.6 3.6 35 226-260 100-137 (443)
342 3k53_A Ferrous iron transport 94.1 0.038 1.3E-06 53.3 4.5 22 228-249 5-26 (271)
343 3bh0_A DNAB-like replicative h 94.1 0.053 1.8E-06 53.8 5.6 35 226-260 66-105 (315)
344 3lxx_A GTPase IMAP family memb 94.1 0.068 2.3E-06 50.3 6.1 23 227-249 30-52 (239)
345 4i1u_A Dephospho-COA kinase; s 94.1 0.022 7.6E-07 53.2 2.6 30 229-259 12-41 (210)
346 1rj9_A FTSY, signal recognitio 94.0 0.019 6.6E-07 56.8 2.3 24 227-250 103-126 (304)
347 2f9l_A RAB11B, member RAS onco 94.0 0.021 7.1E-07 52.1 2.3 22 228-249 7-28 (199)
348 1m2o_B GTP-binding protein SAR 94.0 0.019 6.6E-07 52.0 2.0 21 228-248 25-45 (190)
349 3t34_A Dynamin-related protein 94.0 0.19 6.5E-06 50.5 9.6 22 228-249 36-57 (360)
350 2ocp_A DGK, deoxyguanosine kin 94.0 0.024 8.1E-07 53.7 2.7 24 228-251 4-27 (241)
351 1lw7_A Transcriptional regulat 93.9 0.023 7.9E-07 57.5 2.7 27 227-253 171-197 (365)
352 3pqc_A Probable GTP-binding pr 93.9 0.15 5.2E-06 45.3 8.0 23 227-249 24-46 (195)
353 1oix_A RAS-related protein RAB 93.9 0.02 6.8E-07 52.0 2.0 23 228-250 31-53 (191)
354 3b9q_A Chloroplast SRP recepto 93.9 0.021 7.3E-07 56.4 2.3 24 227-250 101-124 (302)
355 2b6h_A ADP-ribosylation factor 93.9 0.027 9.3E-07 51.0 2.9 21 228-248 31-51 (192)
356 1sq5_A Pantothenate kinase; P- 93.9 0.019 6.5E-07 56.8 1.9 34 229-262 83-121 (308)
357 1g8f_A Sulfate adenylyltransfe 93.9 0.03 1E-06 59.4 3.5 24 229-252 398-421 (511)
358 1np6_A Molybdopterin-guanine d 93.9 0.023 7.9E-07 51.4 2.3 33 227-259 7-42 (174)
359 3aez_A Pantothenate kinase; tr 93.9 0.022 7.5E-07 56.6 2.3 23 229-251 93-115 (312)
360 2onk_A Molybdate/tungstate ABC 93.8 0.02 7E-07 54.6 2.0 24 229-252 27-50 (240)
361 2r6a_A DNAB helicase, replicat 93.8 0.04 1.4E-06 57.6 4.4 36 224-259 199-240 (454)
362 3b1v_A Ferrous iron uptake tra 93.8 0.075 2.6E-06 51.5 6.0 22 228-249 5-26 (272)
363 1bif_A 6-phosphofructo-2-kinas 93.8 0.013 4.3E-07 61.7 0.4 26 226-251 39-64 (469)
364 3e70_C DPA, signal recognition 93.7 0.023 8E-07 56.8 2.3 23 228-250 131-153 (328)
365 2pcj_A ABC transporter, lipopr 93.7 0.017 5.6E-07 54.5 1.1 24 229-252 33-56 (224)
366 1z2a_A RAS-related protein RAB 93.7 0.026 8.9E-07 49.2 2.3 22 228-249 7-28 (168)
367 3tif_A Uncharacterized ABC tra 93.7 0.019 6.3E-07 54.6 1.4 25 228-252 33-57 (235)
368 3tqc_A Pantothenate kinase; bi 93.7 0.025 8.7E-07 56.3 2.4 24 228-251 94-117 (321)
369 2cbz_A Multidrug resistance-as 93.7 0.019 6.4E-07 54.7 1.4 23 228-250 33-55 (237)
370 1odf_A YGR205W, hypothetical 3 93.7 0.025 8.5E-07 55.6 2.3 23 229-251 34-56 (290)
371 3cbq_A GTP-binding protein REM 93.6 0.037 1.3E-06 50.4 3.2 21 228-248 25-45 (195)
372 2pt7_A CAG-ALFA; ATPase, prote 93.6 0.027 9.1E-07 56.4 2.4 26 226-251 171-196 (330)
373 2h17_A ADP-ribosylation factor 93.6 0.023 7.8E-07 50.8 1.7 22 228-249 23-44 (181)
374 2yhs_A FTSY, cell division pro 93.6 0.035 1.2E-06 58.4 3.4 22 229-250 296-317 (503)
375 2wji_A Ferrous iron transport 93.6 0.024 8.1E-07 50.0 1.8 22 228-249 5-26 (165)
376 4f4c_A Multidrug resistance pr 93.6 0.2 6.8E-06 59.3 10.1 26 226-251 442-469 (1321)
377 1zu4_A FTSY; GTPase, signal re 93.6 0.041 1.4E-06 54.8 3.7 36 226-261 105-143 (320)
378 2ged_A SR-beta, signal recogni 93.5 0.029 1E-06 50.4 2.4 24 227-250 49-72 (193)
379 3llu_A RAS-related GTP-binding 93.5 0.052 1.8E-06 49.2 4.0 23 227-249 21-43 (196)
380 3iby_A Ferrous iron transport 93.5 0.065 2.2E-06 51.4 4.9 22 228-249 3-24 (256)
381 3p32_A Probable GTPase RV1496/ 93.5 0.044 1.5E-06 55.3 3.9 32 228-259 81-115 (355)
382 2zej_A Dardarin, leucine-rich 93.5 0.022 7.4E-07 51.2 1.3 21 229-249 5-25 (184)
383 1sgw_A Putative ABC transporte 93.5 0.022 7.6E-07 53.3 1.5 25 228-252 37-61 (214)
384 2qm8_A GTPase/ATPase; G protei 93.4 0.043 1.5E-06 55.0 3.6 25 226-250 53-79 (337)
385 1b0u_A Histidine permease; ABC 93.4 0.023 7.7E-07 55.0 1.5 24 229-252 35-58 (262)
386 2obl_A ESCN; ATPase, hydrolase 93.4 0.059 2E-06 54.3 4.6 32 226-257 69-102 (347)
387 1f6b_A SAR1; gtpases, N-termin 93.4 0.017 5.8E-07 52.8 0.5 21 228-248 27-47 (198)
388 3tmk_A Thymidylate kinase; pho 93.4 0.04 1.4E-06 51.7 3.1 30 229-258 8-37 (216)
389 2j1l_A RHO-related GTP-binding 93.4 0.033 1.1E-06 51.4 2.5 21 228-248 36-56 (214)
390 3cr8_A Sulfate adenylyltranfer 93.4 0.023 7.8E-07 60.9 1.5 26 226-251 367-394 (552)
391 1z08_A RAS-related protein RAB 93.3 0.033 1.1E-06 48.6 2.4 22 228-249 8-29 (170)
392 1g6h_A High-affinity branched- 93.3 0.023 8E-07 54.6 1.4 24 229-252 36-59 (257)
393 3fvq_A Fe(3+) IONS import ATP- 93.3 0.024 8.3E-07 57.4 1.6 23 229-251 33-55 (359)
394 4hlc_A DTMP kinase, thymidylat 93.3 0.079 2.7E-06 49.1 5.0 45 229-273 5-52 (205)
395 2pze_A Cystic fibrosis transme 93.3 0.025 8.5E-07 53.5 1.5 24 228-251 36-59 (229)
396 2gza_A Type IV secretion syste 93.3 0.034 1.2E-06 56.3 2.6 25 227-251 176-200 (361)
397 3sop_A Neuronal-specific septi 93.2 0.028 9.5E-07 54.6 1.8 23 229-251 5-27 (270)
398 1ky3_A GTP-binding protein YPT 93.2 0.035 1.2E-06 49.0 2.4 22 228-249 10-31 (182)
399 3gfo_A Cobalt import ATP-bindi 93.2 0.025 8.5E-07 55.2 1.5 23 229-251 37-59 (275)
400 1qhl_A Protein (cell division 93.2 0.022 7.6E-07 53.9 1.1 23 229-251 30-52 (227)
401 3thx_A DNA mismatch repair pro 93.2 0.13 4.5E-06 58.4 7.5 21 227-247 663-683 (934)
402 1g16_A RAS-related protein SEC 93.2 0.031 1.1E-06 48.8 1.9 22 228-249 5-26 (170)
403 1mv5_A LMRA, multidrug resista 93.2 0.026 8.8E-07 53.9 1.5 24 228-251 30-53 (243)
404 2og2_A Putative signal recogni 93.2 0.033 1.1E-06 56.4 2.3 23 228-250 159-181 (359)
405 2olj_A Amino acid ABC transpor 93.1 0.026 9E-07 54.6 1.5 25 228-252 52-76 (263)
406 3rlf_A Maltose/maltodextrin im 93.1 0.03 1E-06 57.1 2.0 23 229-251 32-54 (381)
407 2ff7_A Alpha-hemolysin translo 93.1 0.026 9E-07 54.0 1.4 24 229-252 38-61 (247)
408 1z47_A CYSA, putative ABC-tran 93.1 0.03 1E-06 56.6 1.9 23 229-251 44-66 (355)
409 2j37_W Signal recognition part 93.1 0.048 1.6E-06 57.7 3.5 34 226-259 101-137 (504)
410 3l0o_A Transcription terminati 93.1 0.12 4.2E-06 52.6 6.3 32 219-250 163-199 (427)
411 2d2e_A SUFC protein; ABC-ATPas 93.1 0.032 1.1E-06 53.4 2.0 21 229-249 32-52 (250)
412 2wjg_A FEOB, ferrous iron tran 93.1 0.033 1.1E-06 49.7 2.0 22 228-249 9-30 (188)
413 2it1_A 362AA long hypothetical 93.1 0.031 1.1E-06 56.7 2.0 23 229-251 32-54 (362)
414 1ji0_A ABC transporter; ATP bi 93.1 0.027 9.2E-07 53.6 1.4 24 229-252 35-58 (240)
415 2zu0_C Probable ATP-dependent 93.0 0.033 1.1E-06 53.9 2.0 23 228-250 48-70 (267)
416 2yyz_A Sugar ABC transporter, 93.0 0.032 1.1E-06 56.5 1.9 23 229-251 32-54 (359)
417 2dpy_A FLII, flagellum-specifi 93.0 0.071 2.4E-06 55.4 4.6 31 226-256 155-187 (438)
418 2qi9_C Vitamin B12 import ATP- 93.0 0.044 1.5E-06 52.5 2.8 25 229-253 29-53 (249)
419 2ixe_A Antigen peptide transpo 93.0 0.028 9.6E-07 54.6 1.4 25 228-252 47-71 (271)
420 1v43_A Sugar-binding transport 93.0 0.033 1.1E-06 56.7 2.0 23 229-251 40-62 (372)
421 2f1r_A Molybdopterin-guanine d 93.0 0.021 7.1E-07 51.6 0.4 24 228-251 4-27 (171)
422 2ghi_A Transport protein; mult 92.9 0.029 9.8E-07 54.2 1.4 24 228-251 48-71 (260)
423 2ihy_A ABC transporter, ATP-bi 92.9 0.029 1E-06 54.7 1.5 24 229-252 50-73 (279)
424 4g1u_C Hemin import ATP-bindin 92.9 0.029 1E-06 54.3 1.3 23 229-251 40-62 (266)
425 1g29_1 MALK, maltose transport 92.9 0.035 1.2E-06 56.6 1.9 22 229-250 32-53 (372)
426 2zj8_A DNA helicase, putative 92.8 0.55 1.9E-05 51.7 11.8 18 226-243 39-56 (720)
427 1yrb_A ATP(GTP)binding protein 92.8 0.065 2.2E-06 50.9 3.7 33 228-260 16-50 (262)
428 1vpl_A ABC transporter, ATP-bi 92.8 0.032 1.1E-06 53.8 1.5 25 228-252 43-67 (256)
429 3d31_A Sulfate/molybdate ABC t 92.8 0.029 1E-06 56.5 1.2 23 229-251 29-51 (348)
430 2lkc_A Translation initiation 92.8 0.041 1.4E-06 48.5 2.1 22 227-248 9-30 (178)
431 2nq2_C Hypothetical ABC transp 92.7 0.032 1.1E-06 53.6 1.4 23 229-251 34-56 (253)
432 1f2t_A RAD50 ABC-ATPase; DNA d 92.7 0.044 1.5E-06 48.0 2.2 22 229-250 26-47 (149)
433 2q6t_A DNAB replication FORK h 92.7 0.058 2E-06 56.1 3.4 35 225-259 197-237 (444)
434 3lv8_A DTMP kinase, thymidylat 92.7 0.038 1.3E-06 52.5 1.9 23 228-250 29-51 (236)
435 2xxa_A Signal recognition part 92.7 0.065 2.2E-06 55.7 3.7 37 226-262 100-140 (433)
436 3ice_A Transcription terminati 92.6 0.19 6.6E-06 51.2 6.9 25 226-250 172-198 (422)
437 2yz2_A Putative ABC transporte 92.6 0.034 1.2E-06 53.8 1.4 25 228-252 35-59 (266)
438 4gzl_A RAS-related C3 botulinu 92.5 0.038 1.3E-06 50.6 1.6 23 227-249 31-53 (204)
439 2gj8_A MNME, tRNA modification 92.5 0.039 1.3E-06 49.1 1.6 21 229-249 7-27 (172)
440 1m7b_A RND3/RHOE small GTP-bin 92.5 0.043 1.5E-06 49.1 1.9 22 228-249 9-30 (184)
441 3def_A T7I23.11 protein; chlor 92.5 0.11 3.9E-06 49.7 5.0 22 228-249 38-59 (262)
442 2pjz_A Hypothetical protein ST 92.5 0.037 1.3E-06 53.6 1.5 22 229-250 33-54 (263)
443 4djt_A GTP-binding nuclear pro 92.5 0.02 6.9E-07 52.8 -0.4 22 227-248 12-33 (218)
444 1j8m_F SRP54, signal recogniti 92.4 0.058 2E-06 53.1 2.8 36 227-262 99-137 (297)
445 3tw8_B RAS-related protein RAB 92.4 0.048 1.6E-06 48.0 2.0 21 228-248 11-31 (181)
446 4a1f_A DNAB helicase, replicat 92.4 0.073 2.5E-06 53.4 3.5 32 229-260 49-83 (338)
447 3aji_B S6C, proteasome (prosom 92.3 0.032 1.1E-06 43.7 0.7 43 379-421 2-45 (83)
448 3ld9_A DTMP kinase, thymidylat 92.3 0.052 1.8E-06 51.1 2.2 24 229-252 24-47 (223)
449 1oxx_K GLCV, glucose, ABC tran 92.3 0.029 1E-06 56.7 0.5 23 229-251 34-56 (353)
450 1svi_A GTP-binding protein YSX 92.3 0.041 1.4E-06 49.5 1.4 23 227-249 24-46 (195)
451 2wsm_A Hydrogenase expression/ 92.3 0.048 1.6E-06 50.3 1.9 25 227-251 31-55 (221)
452 1mh1_A RAC1; GTP-binding, GTPa 92.3 0.056 1.9E-06 47.9 2.3 22 228-249 7-28 (186)
453 3i8s_A Ferrous iron transport 92.3 0.16 5.6E-06 49.0 5.8 22 228-249 5-26 (274)
454 3gj0_A GTP-binding nuclear pro 92.2 0.039 1.3E-06 51.0 1.3 22 228-249 17-39 (221)
455 4tmk_A Protein (thymidylate ki 92.2 0.049 1.7E-06 50.9 1.9 22 229-250 6-27 (213)
456 2cxx_A Probable GTP-binding pr 92.2 0.04 1.4E-06 49.1 1.3 21 229-249 4-24 (190)
457 3gd7_A Fusion complex of cysti 92.2 0.042 1.4E-06 56.3 1.5 23 229-251 50-72 (390)
458 3c5c_A RAS-like protein 12; GD 92.1 0.06 2E-06 48.4 2.4 22 228-249 23-44 (187)
459 3bwd_D RAC-like GTP-binding pr 92.1 0.06 2E-06 47.6 2.3 22 228-249 10-31 (182)
460 1pui_A ENGB, probable GTP-bind 92.0 0.021 7.2E-07 52.2 -0.9 22 228-249 28-49 (210)
461 3hjn_A DTMP kinase, thymidylat 92.0 0.16 5.4E-06 46.7 5.1 32 229-260 3-37 (197)
462 2iwr_A Centaurin gamma 1; ANK 92.0 0.047 1.6E-06 48.3 1.5 22 228-249 9-30 (178)
463 1ls1_A Signal recognition part 92.0 0.095 3.2E-06 51.4 3.8 35 226-260 98-135 (295)
464 3ihw_A Centg3; RAS, centaurin, 92.0 0.064 2.2E-06 48.2 2.4 22 228-249 22-43 (184)
465 2gks_A Bifunctional SAT/APS ki 92.0 0.081 2.8E-06 56.6 3.5 30 229-258 375-407 (546)
466 1vg8_A RAS-related protein RAB 91.9 0.064 2.2E-06 48.6 2.4 22 228-249 10-31 (207)
467 2gxq_A Heat resistant RNA depe 91.9 0.15 5.1E-06 46.3 4.9 24 226-249 38-62 (207)
468 1t6n_A Probable ATP-dependent 91.9 0.21 7.3E-06 45.9 5.9 22 226-247 51-72 (220)
469 1ko7_A HPR kinase/phosphatase; 91.9 0.066 2.3E-06 53.1 2.5 28 226-254 144-171 (314)
470 2rcn_A Probable GTPase ENGC; Y 91.9 0.052 1.8E-06 54.9 1.7 24 228-251 217-240 (358)
471 3r7w_A Gtpase1, GTP-binding pr 91.8 0.09 3.1E-06 51.8 3.4 22 228-249 5-26 (307)
472 3b6e_A Interferon-induced heli 91.8 0.12 4.3E-06 47.0 4.2 37 213-249 34-71 (216)
473 3cph_A RAS-related protein SEC 91.8 0.067 2.3E-06 48.7 2.3 22 228-249 22-43 (213)
474 3reg_A RHO-like small GTPase; 91.8 0.068 2.3E-06 48.1 2.3 22 228-249 25-46 (194)
475 1knx_A Probable HPR(Ser) kinas 91.8 0.049 1.7E-06 54.0 1.4 29 226-255 147-175 (312)
476 2npi_A Protein CLP1; CLP1-PCF1 91.7 0.059 2E-06 56.5 2.0 25 226-250 136-162 (460)
477 2bbs_A Cystic fibrosis transme 91.7 0.045 1.5E-06 53.7 1.0 22 229-250 67-88 (290)
478 2qe7_A ATP synthase subunit al 91.7 0.31 1.1E-05 51.1 7.4 37 220-256 151-193 (502)
479 1ksh_A ARF-like protein 2; sma 91.6 0.054 1.9E-06 48.3 1.5 23 227-249 19-41 (186)
480 3th5_A RAS-related C3 botulinu 90.9 0.033 1.1E-06 50.8 0.0 22 227-248 31-52 (204)
481 3t5g_A GTP-binding protein RHE 91.6 0.064 2.2E-06 47.5 1.9 21 228-248 8-28 (181)
482 1u0l_A Probable GTPase ENGC; p 91.6 0.089 3E-06 51.7 3.1 35 218-252 160-195 (301)
483 1qde_A EIF4A, translation init 91.6 0.21 7.1E-06 46.1 5.5 23 226-248 51-74 (224)
484 3bgw_A DNAB-like replicative h 91.5 0.087 3E-06 54.9 3.1 37 224-260 193-234 (444)
485 2www_A Methylmalonic aciduria 91.4 0.073 2.5E-06 53.6 2.3 22 229-250 77-98 (349)
486 2hf9_A Probable hydrogenase ni 91.4 0.067 2.3E-06 49.5 1.9 23 228-250 40-62 (226)
487 1gwn_A RHO-related GTP-binding 91.4 0.068 2.3E-06 49.1 1.9 23 227-249 29-51 (205)
488 2ffh_A Protein (FFH); SRP54, s 91.4 0.11 3.7E-06 53.8 3.6 35 226-260 98-135 (425)
489 4dhe_A Probable GTP-binding pr 91.4 0.15 5.2E-06 46.8 4.3 23 227-249 30-52 (223)
490 1xx6_A Thymidine kinase; NESG, 91.3 0.14 4.7E-06 47.0 3.8 31 228-258 10-43 (191)
491 2yv5_A YJEQ protein; hydrolase 91.2 0.11 3.9E-06 51.0 3.4 33 218-251 156-189 (302)
492 2vp4_A Deoxynucleoside kinase; 91.2 0.076 2.6E-06 49.8 2.1 28 229-257 23-50 (230)
493 1tf7_A KAIC; homohexamer, hexa 91.2 0.069 2.4E-06 56.8 1.9 26 225-250 278-305 (525)
494 3tui_C Methionine import ATP-b 91.2 0.073 2.5E-06 54.0 2.0 23 229-251 57-79 (366)
495 2p67_A LAO/AO transport system 91.0 0.12 4E-06 51.8 3.4 30 229-258 59-91 (341)
496 2cjw_A GTP-binding protein GEM 91.0 0.09 3.1E-06 47.6 2.3 22 228-249 8-29 (192)
497 3nh6_A ATP-binding cassette SU 91.0 0.052 1.8E-06 53.7 0.7 25 228-252 82-106 (306)
498 1moz_A ARL1, ADP-ribosylation 90.9 0.053 1.8E-06 48.1 0.6 22 227-248 19-40 (183)
499 2q3h_A RAS homolog gene family 90.9 0.079 2.7E-06 47.9 1.8 22 228-249 22-43 (201)
500 2atx_A Small GTP binding prote 90.9 0.085 2.9E-06 47.4 2.0 22 228-249 20-41 (194)
No 1
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.3e-38 Score=322.66 Aligned_cols=189 Identities=27% Similarity=0.415 Sum_probs=148.2
Q ss_pred eecCCCccccccccChhHHHHHHHhhcccccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccC------ChHHHHHHHH
Q 037859 200 VFFEHPATFDTLAMETKKKEEIKKDLKKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQ------DNSELRSLLI 273 (504)
Q Consensus 200 ~~~~~p~~f~~~~~~~~~k~~i~~~l~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~------~~~~l~~l~~ 273 (504)
.|+.||..|..+++.+ |+|+|||||||||||++|+|+|++++.+++.++++.+. +...++.+|.
T Consensus 166 ~Pl~~pe~f~~~gi~~----------prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vGese~~vr~lF~ 235 (405)
T 4b4t_J 166 LPVKHPELFESLGIAQ----------PKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFV 235 (405)
T ss_dssp HHHHCHHHHHHHTCCC----------CCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTTHHHHHHHHHHH
T ss_pred HHHhCHHHHHhCCCCC----------CCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccchHHHHHHHHHH
Confidence 3555555555555555 89999999999999999999999999999999998763 3466888887
Q ss_pred hc--cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccCCCceEEEE
Q 037859 274 DT--SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERIIVF 351 (504)
Q Consensus 274 ~~--~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~~~~ivI~ 351 (504)
.+ ..||||||||||+++. +|.. +..+++.....++++||+.|||+.+ ..+++||+
T Consensus 236 ~Ar~~aP~IIFiDEiDai~~---~R~~------------------~~~~~~~~~~~~l~~lL~~lDg~~~--~~~V~vIa 292 (405)
T 4b4t_J 236 MAREHAPSIIFMDEIDSIGS---TRVE------------------GSGGGDSEVQRTMLELLNQLDGFET--SKNIKIIM 292 (405)
T ss_dssp HHHHTCSEEEEEESSSCCTT---SCSC------------------SSSGGGGHHHHHHHHHHHHHHTTTC--CCCEEEEE
T ss_pred HHHHhCCceEeeecchhhcc---CCCC------------------CCCCCcHHHHHHHHHHHHhhhccCC--CCCeEEEe
Confidence 76 4799999999999753 2210 1112234456789999999999965 45699999
Q ss_pred ecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCcCCcchHHHHhcCccCC-CCCHHHHHHhhC
Q 037859 352 TTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDIDSHELYAVIESMPAET-NMTPADVAENLM 421 (504)
Q Consensus 352 tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~~~~~~~~~i~~l~~~~-~~s~a~i~~~l~ 421 (504)
|||+++.|||||+||||||++|+|++|+.++|..|++.|+.........++..++..+ |||+|||..+|.
T Consensus 293 ATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~ 363 (405)
T 4b4t_J 293 ATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCT 363 (405)
T ss_dssp EESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHH
T ss_pred ccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999998654322111244455544 999999987654
No 2
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-37 Score=319.44 Aligned_cols=193 Identities=25% Similarity=0.365 Sum_probs=153.7
Q ss_pred ccccccccChhHHHHHHHhh-----------------cccccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccC-----
Q 037859 206 ATFDTLAMETKKKEEIKKDL-----------------KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQ----- 263 (504)
Q Consensus 206 ~~f~~~~~~~~~k~~i~~~l-----------------~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~----- 263 (504)
.+|+++++-+++|++|.+.+ |+|||||||||||||++|+|+|++++.+++.++.+.+.
T Consensus 179 v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vG 258 (437)
T 4b4t_I 179 ESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLG 258 (437)
T ss_dssp CCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSS
T ss_pred CcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCc
Confidence 46777887777777777665 89999999999999999999999999999999988763
Q ss_pred -ChHHHHHHHHhc--cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCcc
Q 037859 264 -DNSELRSLLIDT--SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLW 340 (504)
Q Consensus 264 -~~~~l~~l~~~~--~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~ 340 (504)
+...++.+|..+ ..||||||||||+++. .|.. +..+++.....++++||+.|||+.
T Consensus 259 esek~ir~lF~~Ar~~aP~IIfiDEiDai~~---~R~~------------------~~~~~~~~~~~~l~~LL~~lDg~~ 317 (437)
T 4b4t_I 259 DGPRLCRQIFKVAGENAPSIVFIDEIDAIGT---KRYD------------------SNSGGEREIQRTMLELLNQLDGFD 317 (437)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEEEEESSSSC---CCSC------------------SSCSSCCHHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHHhcCCcEEEEehhhhhcc---cCCC------------------CCCCccHHHHHHHHHHHHHhhCcC
Confidence 335678888766 4799999999999753 2210 112234456778999999999985
Q ss_pred ccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCcCCcchHHHHhcCccCC-CCCHHHHHHh
Q 037859 341 SASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDIDSHELYAVIESMPAET-NMTPADVAEN 419 (504)
Q Consensus 341 ~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~~~~~~~~~i~~l~~~~-~~s~a~i~~~ 419 (504)
+ .++++||+|||+++.|||||+||||||++|+|++|+.++|+.|++.|+.........+++.++..+ |||+|||..+
T Consensus 318 ~--~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l 395 (437)
T 4b4t_I 318 D--RGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAM 395 (437)
T ss_dssp C--SSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHH
T ss_pred C--CCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHH
Confidence 4 466999999999999999999999999999999999999999999998654322111234445544 9999999876
Q ss_pred hC
Q 037859 420 LM 421 (504)
Q Consensus 420 l~ 421 (504)
+.
T Consensus 396 ~~ 397 (437)
T 4b4t_I 396 CT 397 (437)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 3
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-36 Score=318.37 Aligned_cols=192 Identities=24% Similarity=0.328 Sum_probs=149.0
Q ss_pred cccccccChhHHHHHHHhh-----------------cccccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccC------
Q 037859 207 TFDTLAMETKKKEEIKKDL-----------------KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQ------ 263 (504)
Q Consensus 207 ~f~~~~~~~~~k~~i~~~l-----------------~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~------ 263 (504)
+|+++++-+++|+.|.+.+ |+|+|||||||||||++|+|+|++++.+++.++++.+.
T Consensus 179 ~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~Ge 258 (437)
T 4b4t_L 179 TFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGE 258 (437)
T ss_dssp CSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSSSH
T ss_pred ChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccchH
Confidence 4555555555555555444 89999999999999999999999999999999998763
Q ss_pred ChHHHHHHHHhc--cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccc
Q 037859 264 DNSELRSLLIDT--SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWS 341 (504)
Q Consensus 264 ~~~~l~~l~~~~--~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~ 341 (504)
+...++.+|..+ ..||||||||||+++. +|.. .+...+.....++++||+.|||+.+
T Consensus 259 se~~ir~~F~~A~~~~P~IifiDEiDai~~---~R~~------------------~~~~~~~~~~~~l~~lL~~lDg~~~ 317 (437)
T 4b4t_L 259 SARIIREMFAYAKEHEPCIIFMDEVDAIGG---RRFS------------------EGTSADREIQRTLMELLTQMDGFDN 317 (437)
T ss_dssp HHHHHHHHHHHHHHSCSEEEEEECCCSSSC---CCSS------------------SCCSSTTHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHHHhcCCceeeeeccccccc---cccc------------------CCCCcchHHHHHHHHHHHHhhcccC
Confidence 235677888766 4799999999999753 2210 1122334456789999999999965
Q ss_pred cCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCcCCcchHHHHhcCccCC-CCCHHHHHHhh
Q 037859 342 ASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDIDSHELYAVIESMPAET-NMTPADVAENL 420 (504)
Q Consensus 342 ~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~~~~~~~~~i~~l~~~~-~~s~a~i~~~l 420 (504)
.++++||+|||+++.|||||+||||||.+|+|++|+.++|..|++.|+.........++..++..+ |||+|||..++
T Consensus 318 --~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~ 395 (437)
T 4b4t_L 318 --LGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCA 395 (437)
T ss_dssp --TTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHH
T ss_pred --CCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHH
Confidence 456999999999999999999999999999999999999999999998643221111234445544 99999998765
Q ss_pred C
Q 037859 421 M 421 (504)
Q Consensus 421 ~ 421 (504)
.
T Consensus 396 ~ 396 (437)
T 4b4t_L 396 T 396 (437)
T ss_dssp H
T ss_pred H
Confidence 4
No 4
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4e-36 Score=313.93 Aligned_cols=195 Identities=26% Similarity=0.364 Sum_probs=153.5
Q ss_pred CCccccccccChhHHHHHHHhh-----------------cccccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccC---
Q 037859 204 HPATFDTLAMETKKKEEIKKDL-----------------KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQ--- 263 (504)
Q Consensus 204 ~p~~f~~~~~~~~~k~~i~~~l-----------------~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~--- 263 (504)
.+.+|+++++.+++|++|.+.+ |+|||||||||||||++|+|+|++++.+++.++++.+.
T Consensus 176 p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~ 255 (434)
T 4b4t_M 176 PTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMY 255 (434)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSC
T ss_pred CCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcc
Confidence 3456888888888888777765 89999999999999999999999999999999998763
Q ss_pred ---ChHHHHHHHHhc--cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcC
Q 037859 264 ---DNSELRSLLIDT--SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDG 338 (504)
Q Consensus 264 ---~~~~l~~l~~~~--~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg 338 (504)
+...++.+|..+ ..||||||||||+++. +|.. +..++......++++||+.|||
T Consensus 256 vGese~~ir~lF~~A~~~aP~IifiDEiDal~~---~R~~------------------~~~~~~~~~~~~~~~lL~~ldg 314 (434)
T 4b4t_M 256 IGEGAKLVRDAFALAKEKAPTIIFIDELDAIGT---KRFD------------------SEKSGDREVQRTMLELLNQLDG 314 (434)
T ss_dssp SSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHC---CCSS------------------GGGGTTHHHHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHhcCCeEEeecchhhhhh---ccCC------------------CCCCCchHHHHHHHHHHHHhhc
Confidence 335678888765 4799999999999863 2210 1122334456789999999999
Q ss_pred ccccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCcCCcchHHHHhcCccCC-CCCHHHHH
Q 037859 339 LWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDIDSHELYAVIESMPAET-NMTPADVA 417 (504)
Q Consensus 339 ~~~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~~~~~~~~~i~~l~~~~-~~s~a~i~ 417 (504)
+.+ .++++||+|||+++.|||||+||||||.+|+|++|+.++|..|++.|+..........+..++..+ |||+|||.
T Consensus 315 ~~~--~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~ 392 (434)
T 4b4t_M 315 FSS--DDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLK 392 (434)
T ss_dssp SCS--SCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHH
T ss_pred cCC--CCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHH
Confidence 965 456999999999999999999999999999999999999999999987543221111233445444 99999998
Q ss_pred HhhC
Q 037859 418 ENLM 421 (504)
Q Consensus 418 ~~l~ 421 (504)
.+|.
T Consensus 393 ~l~~ 396 (434)
T 4b4t_M 393 AVTV 396 (434)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 5
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-35 Score=309.12 Aligned_cols=192 Identities=26% Similarity=0.394 Sum_probs=152.7
Q ss_pred ccccccccChhHHHHHHHhh-----------------cccccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccC-----
Q 037859 206 ATFDTLAMETKKKEEIKKDL-----------------KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQ----- 263 (504)
Q Consensus 206 ~~f~~~~~~~~~k~~i~~~l-----------------~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~----- 263 (504)
.+|+++++-+++|+.|.+.+ |||+|||||||||||++|+|+|++++.+++.++++.+.
T Consensus 169 v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~G 248 (428)
T 4b4t_K 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLG 248 (428)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCS
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccc
Confidence 45777777777777777665 89999999999999999999999999999999998763
Q ss_pred -ChHHHHHHHHhc--cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCcc
Q 037859 264 -DNSELRSLLIDT--SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLW 340 (504)
Q Consensus 264 -~~~~l~~l~~~~--~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~ 340 (504)
+...++.+|..+ ..||||||||||+++. .|.. ...+++.....++++||+.|||+.
T Consensus 249 e~e~~ir~lF~~A~~~aP~IifiDEiD~i~~---~R~~------------------~~~~~~~~~~r~l~~lL~~ldg~~ 307 (428)
T 4b4t_K 249 EGPRMVRDVFRLARENAPSIIFIDEVDSIAT---KRFD------------------AQTGSDREVQRILIELLTQMDGFD 307 (428)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEEECTHHHHC---SCSS------------------SCSCCCCHHHHHHHHHHHHHHHSC
T ss_pred hhHHHHHHHHHHHHHcCCCeeechhhhhhhc---cccC------------------CCCCCChHHHHHHHHHHHHhhCCC
Confidence 346688888776 4799999999999863 2210 112234456779999999999996
Q ss_pred ccCCCceEEEEecCCCCCCChhhhcCCCceeEEEec-CCCHHHHHHHHHHhcCcCCcchHHHHhcCccCC-CCCHHHHHH
Q 037859 341 SASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMS-YCCFEAFKVLAKNYLDIDSHELYAVIESMPAET-NMTPADVAE 418 (504)
Q Consensus 341 ~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~-~p~~e~~~~i~~~~l~~~~~~~~~~i~~l~~~~-~~s~a~i~~ 418 (504)
+. .+++||+|||+++.|||||+||||||++|+|+ +|+.++|..|++.++.........+++.++..+ |||+|||..
T Consensus 308 ~~--~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~ 385 (428)
T 4b4t_K 308 QS--TNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAA 385 (428)
T ss_dssp SS--CSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHH
T ss_pred CC--CCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHH
Confidence 54 55999999999999999999999999999996 899999999999998543221111234455544 999999986
Q ss_pred hh
Q 037859 419 NL 420 (504)
Q Consensus 419 ~l 420 (504)
+|
T Consensus 386 l~ 387 (428)
T 4b4t_K 386 IM 387 (428)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 6
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-35 Score=306.14 Aligned_cols=194 Identities=26% Similarity=0.330 Sum_probs=154.8
Q ss_pred CccccccccChhHHHHHHHhh-----------------cccccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccC----
Q 037859 205 PATFDTLAMETKKKEEIKKDL-----------------KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQ---- 263 (504)
Q Consensus 205 p~~f~~~~~~~~~k~~i~~~l-----------------~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~---- 263 (504)
..+|+++++-+++|++|.+.+ |||+|||||||||||++|+|+|++++.+++.++++.+.
T Consensus 205 ~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~v 284 (467)
T 4b4t_H 205 DVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYV 284 (467)
T ss_dssp SCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSS
T ss_pred CCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccC
Confidence 356888888888888887765 89999999999999999999999999999999998763
Q ss_pred --ChHHHHHHHHhc--cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCc
Q 037859 264 --DNSELRSLLIDT--SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGL 339 (504)
Q Consensus 264 --~~~~l~~l~~~~--~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~ 339 (504)
+...++.+|..+ ..||||||||||+++. +|.. .+.+.......+++.||+.|||+
T Consensus 285 Gesek~ir~lF~~Ar~~aP~IIfiDEiDai~~---~R~~------------------~~~~~~~~~~~~l~~lL~~lDg~ 343 (467)
T 4b4t_H 285 GEGARMVRELFEMARTKKACIIFFDEIDAVGG---ARFD------------------DGAGGDNEVQRTMLELITQLDGF 343 (467)
T ss_dssp SHHHHHHHHHHHHHHHTCSEEEEEECCTTTSB---CCSS------------------SSCGGGGHHHHHHHHHHHHHHSS
T ss_pred CHHHHHHHHHHHHHHhcCCceEeecccccccc---cccC------------------cCCCccHHHHHHHHHHHHHhhcc
Confidence 345678888776 4799999999999753 2210 01122344567899999999998
Q ss_pred cccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCcCCcchHHHHhcCccCC-CCCHHHHHH
Q 037859 340 WSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDIDSHELYAVIESMPAET-NMTPADVAE 418 (504)
Q Consensus 340 ~~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~~~~~~~~~i~~l~~~~-~~s~a~i~~ 418 (504)
.+ .++++||+|||+++.|||||+||||||++|+|++|+.++|..|++.|+..........++.++..+ |||+|||..
T Consensus 344 ~~--~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~ 421 (467)
T 4b4t_H 344 DP--RGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRS 421 (467)
T ss_dssp CC--TTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHH
T ss_pred CC--CCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHH
Confidence 54 466999999999999999999999999999999999999999999998654322111233444444 999999987
Q ss_pred hhC
Q 037859 419 NLM 421 (504)
Q Consensus 419 ~l~ 421 (504)
+|.
T Consensus 422 l~~ 424 (467)
T 4b4t_H 422 VCT 424 (467)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
No 7
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.97 E-value=2.2e-32 Score=304.36 Aligned_cols=188 Identities=24% Similarity=0.375 Sum_probs=128.5
Q ss_pred ecCCCccccccccChhHHHHHHHhhcccccccCCCCCcHHHHHHHHHHhcCCcEEEEecccc------CChHHHHHHHHh
Q 037859 201 FFEHPATFDTLAMETKKKEEIKKDLKKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTV------QDNSELRSLLID 274 (504)
Q Consensus 201 ~~~~p~~f~~~~~~~~~k~~i~~~l~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~------~~~~~l~~l~~~ 274 (504)
|+.||..|..+...+ ++|+|||||||||||++|+|+|++++.+++.++.+.+ .+...++.+|..
T Consensus 496 p~~~p~~f~~~g~~~----------~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~ 565 (806)
T 3cf2_A 496 PVEHPDKFLKFGMTP----------SKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDK 565 (806)
T ss_dssp TTTCSGGGSSSCCCC----------CSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHH
T ss_pred hhhCHHHHHhcCCCC----------CceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHHH
Confidence 444555555444444 8999999999999999999999999999999987764 366789999988
Q ss_pred cc--CCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccCCCceEEEEe
Q 037859 275 TS--SKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERIIVFT 352 (504)
Q Consensus 275 ~~--~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~~~~ivI~t 352 (504)
+. .||||||||||+++..++.. ...++....+++++||++|||+.+ ..+++||+|
T Consensus 566 Ar~~~P~IifiDEiDsl~~~R~~~---------------------~~~~~~~~~rv~~~lL~~mdg~~~--~~~V~vi~a 622 (806)
T 3cf2_A 566 ARQAAPCVLFFDELDSIAKARGGN---------------------IGDGGGAADRVINQILTEMDGMST--KKNVFIIGA 622 (806)
T ss_dssp HHTTCSEEEECSCGGGCC-----------------------------------CHHHHHHHHHHHSSCS--SSSEEEECC
T ss_pred HHHcCCceeechhhhHHhhccCCC---------------------CCCCchHHHHHHHHHHHHHhCCCC--CCCEEEEEe
Confidence 74 69999999999986322211 112234456789999999999965 456999999
Q ss_pred cCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCcCCcchHHHHhcCccCC-CCCHHHHHHhhC
Q 037859 353 TNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDIDSHELYAVIESMPAET-NMTPADVAENLM 421 (504)
Q Consensus 353 TN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~~~~~~~~~i~~l~~~~-~~s~a~i~~~l~ 421 (504)
||+++.|||||+||||||.+|+|++|+.++|..|++.++.........++..+++.+ |||+|||..+|.
T Consensus 623 TN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~ 692 (806)
T 3cf2_A 623 TNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQ 692 (806)
T ss_dssp -CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----------------CHHHHHH
T ss_pred CCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999998765433333466677765 999999987654
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.97 E-value=2.1e-30 Score=288.50 Aligned_cols=190 Identities=26% Similarity=0.349 Sum_probs=153.0
Q ss_pred ccccccccChhHHHHHHHhh-----------------cccccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccC-----
Q 037859 206 ATFDTLAMETKKKEEIKKDL-----------------KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQ----- 263 (504)
Q Consensus 206 ~~f~~~~~~~~~k~~i~~~l-----------------~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~----- 263 (504)
.+|+++++-++.|++|.+.+ |+|+|||||||||||+||+++|++++.+++.+++..+.
T Consensus 201 v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~g 280 (806)
T 3cf2_A 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAG 280 (806)
T ss_dssp CCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCTT
T ss_pred CChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccch
Confidence 45777777777777766654 89999999999999999999999999999999987652
Q ss_pred -ChHHHHHHHHhcc--CCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCcc
Q 037859 264 -DNSELRSLLIDTS--SKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLW 340 (504)
Q Consensus 264 -~~~~l~~l~~~~~--~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~ 340 (504)
+...++.+|..+. .||||||||||+++. +|. ...+.....++++||..|||+.
T Consensus 281 ese~~lr~lF~~A~~~~PsIIfIDEiDal~~---~r~---------------------~~~~~~~~riv~~LL~~mdg~~ 336 (806)
T 3cf2_A 281 ESESNLRKAFEEAEKNAPAIIFIDELDAIAP---KRE---------------------KTHGEVERRIVSQLLTLMDGLK 336 (806)
T ss_dssp HHHHHHHHHHHHHTTSCSEEEEEESGGGTCC---TTT---------------------TCCCTTHHHHHHHHHTHHHHCC
T ss_pred HHHHHHHHHHHHHHHcCCeEEEEehhccccc---ccC---------------------CCCChHHHHHHHHHHHHHhccc
Confidence 3467889998774 699999999999863 221 1223445678999999999996
Q ss_pred ccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCcCCcchHHHHhcCccCC-CCCHHHHHHh
Q 037859 341 SASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDIDSHELYAVIESMPAET-NMTPADVAEN 419 (504)
Q Consensus 341 ~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~~~~~~~~~i~~l~~~~-~~s~a~i~~~ 419 (504)
+. ..++||+|||+++.|||||+||||||.+|+|+.|+.++|.+|++.++..........+..++..+ ||+++||..+
T Consensus 337 ~~--~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~L 414 (806)
T 3cf2_A 337 QR--AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAAL 414 (806)
T ss_dssp GG--GCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHH
T ss_pred cc--CCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHH
Confidence 53 45999999999999999999999999999999999999999999998654332222344555544 9999999865
Q ss_pred hC
Q 037859 420 LM 421 (504)
Q Consensus 420 l~ 421 (504)
+.
T Consensus 415 v~ 416 (806)
T 3cf2_A 415 CS 416 (806)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 9
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.94 E-value=4.3e-26 Score=226.07 Aligned_cols=189 Identities=22% Similarity=0.300 Sum_probs=138.6
Q ss_pred cccccccChhHHHHHHHhh-----------------cccccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccCC-----
Q 037859 207 TFDTLAMETKKKEEIKKDL-----------------KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQD----- 264 (504)
Q Consensus 207 ~f~~~~~~~~~k~~i~~~l-----------------~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~----- 264 (504)
+|+++++.++.|+.|.+.+ ++|+||+||||||||+|++++|+.++.+++.++...+..
T Consensus 8 ~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~~~~ 87 (274)
T 2x8a_A 8 TWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGE 87 (274)
T ss_dssp ----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSSTTHH
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhhhhH
Confidence 4666676666776665543 789999999999999999999999999999998876632
Q ss_pred -hHHHHHHHHhc--cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccc
Q 037859 265 -NSELRSLLIDT--SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWS 341 (504)
Q Consensus 265 -~~~l~~l~~~~--~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~ 341 (504)
...++.+|..+ ..|+|+|+||||.++.. +.. .........++.++..|||...
T Consensus 88 ~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~---r~~---------------------~~~~~~~~~~~~~l~~Lsgg~~ 143 (274)
T 2x8a_A 88 SERAVRQVFQRAKNSAPCVIFFDEVDALCPR---RSD---------------------RETGASVRVVNQLLTEMDGLEA 143 (274)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------------------------------CTTHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHHHHhcCCCeEeeehhhhhhcc---cCC---------------------CcchHHHHHHHHHHHhhhcccc
Confidence 23567777764 47899999999986521 110 0001123467899999999843
Q ss_pred cCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCcCC------cchHHHHhcCccCCCCCHHH
Q 037859 342 ASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDIDS------HELYAVIESMPAETNMTPAD 415 (504)
Q Consensus 342 ~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~~~------~~~~~~i~~l~~~~~~s~a~ 415 (504)
+..++++++||+++.||||++||||||.+|++++|+.++|..|++.++.... ......+.......|||+||
T Consensus 144 --~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgad 221 (274)
T 2x8a_A 144 --RQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGAD 221 (274)
T ss_dssp --TTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHH
T ss_pred --cCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHH
Confidence 4558899999999999999999999999999999999999999999985321 12233333333334999999
Q ss_pred HHHhhC
Q 037859 416 VAENLM 421 (504)
Q Consensus 416 i~~~l~ 421 (504)
|..++.
T Consensus 222 l~~l~~ 227 (274)
T 2x8a_A 222 LSALVR 227 (274)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 987644
No 10
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.94 E-value=2.7e-26 Score=230.45 Aligned_cols=192 Identities=22% Similarity=0.360 Sum_probs=146.1
Q ss_pred CccccccccChhHHHHHHHhh-----------------cccccccCCCCCcHHHHHHHHHHhcCCcEEEEecccc-----
Q 037859 205 PATFDTLAMETKKKEEIKKDL-----------------KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTV----- 262 (504)
Q Consensus 205 p~~f~~~~~~~~~k~~i~~~l-----------------~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~----- 262 (504)
+.+|+++++.+..|+.+.+.+ ++|+|||||||||||++|+++|++++.+++.+++..+
T Consensus 11 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~~ 90 (301)
T 3cf0_A 11 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWF 90 (301)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhhc
Confidence 446788888888887777654 5789999999999999999999999999999987764
Q ss_pred -CChHHHHHHHHhc--cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCc
Q 037859 263 -QDNSELRSLLIDT--SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGL 339 (504)
Q Consensus 263 -~~~~~l~~l~~~~--~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~ 339 (504)
.....++.+|..+ ..|+||||||||.+....+.. ...........++.||..|||+
T Consensus 91 g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~---------------------~~~~~~~~~~~~~~lL~~l~~~ 149 (301)
T 3cf0_A 91 GESEANVREIFDKARQAAPCVLFFDELDSIAKARGGN---------------------IGDGGGAADRVINQILTEMDGM 149 (301)
T ss_dssp TTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTT---------------------TCCSSCSCCHHHHHHHHHHHSS
T ss_pred CchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCC---------------------cCCcchHHHHHHHHHHHHhhcc
Confidence 2345577777765 368999999999975321110 0011223345788999999998
Q ss_pred cccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCcCCc---chHHHHhcCccCCCCCHHHH
Q 037859 340 WSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDIDSH---ELYAVIESMPAETNMTPADV 416 (504)
Q Consensus 340 ~~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~~~~---~~~~~i~~l~~~~~~s~a~i 416 (504)
.. ..+++||+|||+++.||++++|||||+..|+++.|+.++|..|++.++..... .....+... ..+++++||
T Consensus 150 ~~--~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~--~~g~sg~dl 225 (301)
T 3cf0_A 150 ST--KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKM--TNGFSGADL 225 (301)
T ss_dssp CT--TSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHT--CSSCCHHHH
T ss_pred cC--CCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHH--cCCCCHHHH
Confidence 53 45689999999999999999999999999999999999999999999864322 122223221 348999998
Q ss_pred HHhhC
Q 037859 417 AENLM 421 (504)
Q Consensus 417 ~~~l~ 421 (504)
..++.
T Consensus 226 ~~l~~ 230 (301)
T 3cf0_A 226 TEICQ 230 (301)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 86543
No 11
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.93 E-value=3.1e-25 Score=224.97 Aligned_cols=190 Identities=23% Similarity=0.299 Sum_probs=149.4
Q ss_pred CccccccccChhHHHHHHHhh----------------cccccccCCCCCcHHHHHHHHHHhc-CCcEEEEeccccC----
Q 037859 205 PATFDTLAMETKKKEEIKKDL----------------KKGYLLYGPPGTGKSTMIAAMANFL-NYDVYDLELTTVQ---- 263 (504)
Q Consensus 205 p~~f~~~~~~~~~k~~i~~~l----------------~rg~LL~GPpGtGKTsla~aiA~~l-~~~i~~l~~~~~~---- 263 (504)
+.+|+++++.++.|+.|.+.+ ++|+|||||||||||++|+++|+++ +.+++.++++.+.
T Consensus 8 ~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~~~ 87 (322)
T 1xwi_A 8 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWL 87 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCSSC
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhhhh
Confidence 345778888888887777654 4789999999999999999999999 8899999987652
Q ss_pred --ChHHHHHHHHhc--cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCc
Q 037859 264 --DNSELRSLLIDT--SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGL 339 (504)
Q Consensus 264 --~~~~l~~l~~~~--~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~ 339 (504)
....++.+|..+ ..|+||||||||.++. .+. ..........+++||..+||+
T Consensus 88 g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~---~~~---------------------~~~~~~~~~~~~~ll~~ld~~ 143 (322)
T 1xwi_A 88 GESEKLVKNLFQLARENKPSIIFIDEIDSLCG---SRS---------------------ENESEAARRIKTEFLVQMQGV 143 (322)
T ss_dssp CSCHHHHHHHHHHHHHTSSEEEEEETTTGGGC---CSS---------------------SCCTTHHHHHHHHHHHHHHCS
T ss_pred hHHHHHHHHHHHHHHhcCCcEEEeecHHHhcc---ccc---------------------cccchHHHHHHHHHHHHHhcc
Confidence 345677777655 4789999999999752 211 112233556889999999998
Q ss_pred cccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCcCCcc-hHHHHhcCccCC-CCCHHHHH
Q 037859 340 WSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDIDSHE-LYAVIESMPAET-NMTPADVA 417 (504)
Q Consensus 340 ~~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~~~~~-~~~~i~~l~~~~-~~s~a~i~ 417 (504)
.. ...+++||+|||+++.||++|+| ||+..|+++.|+.++|..|++.++...... ....+..++..+ |+|++||.
T Consensus 144 ~~-~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~ 220 (322)
T 1xwi_A 144 GV-DNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADIS 220 (322)
T ss_dssp SS-CCTTEEEEEEESCTTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHH
T ss_pred cc-cCCCEEEEEecCCcccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHH
Confidence 53 24568999999999999999999 999999999999999999999998654433 233456666655 99999998
Q ss_pred HhhC
Q 037859 418 ENLM 421 (504)
Q Consensus 418 ~~l~ 421 (504)
.++.
T Consensus 221 ~l~~ 224 (322)
T 1xwi_A 221 IIVR 224 (322)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 12
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.93 E-value=9.2e-26 Score=239.07 Aligned_cols=194 Identities=28% Similarity=0.362 Sum_probs=148.7
Q ss_pred CccccccccChhHHHHHHHhh----------------cccccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccC-----
Q 037859 205 PATFDTLAMETKKKEEIKKDL----------------KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQ----- 263 (504)
Q Consensus 205 p~~f~~~~~~~~~k~~i~~~l----------------~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~----- 263 (504)
..+|+++++.++.|+++.+.+ ++|+||+||||||||++|+++|++++.+++.++++.+.
T Consensus 12 ~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~~g 91 (476)
T 2ce7_A 12 RVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVG 91 (476)
T ss_dssp CCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCCTT
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHHhc
Confidence 346899999998887776543 68999999999999999999999999999999988753
Q ss_pred -ChHHHHHHHHhc--cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCcc
Q 037859 264 -DNSELRSLLIDT--SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLW 340 (504)
Q Consensus 264 -~~~~l~~l~~~~--~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~ 340 (504)
+...++.+|..+ ..||||||||||.+.. .+.. +..++......+++.||+.|||+.
T Consensus 92 ~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~---~r~~------------------~~~g~~~~~~~~l~~LL~~ld~~~ 150 (476)
T 2ce7_A 92 VGAARVRDLFAQAKAHAPCIVFIDEIDAVGR---HRGA------------------GLGGGHDEREQTLNQLLVEMDGFD 150 (476)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEEETGGGTCC---C---------------------------CHHHHHHHHHHHHHHHSC
T ss_pred ccHHHHHHHHHHHHhcCCCEEEEechhhhhh---hccc------------------ccCcCcHHHHHHHHHHHHHHhccC
Confidence 235677788766 3799999999999742 1110 011233445678999999999885
Q ss_pred ccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCcCCcchHHHHhcCccC-CCCCHHHHHHh
Q 037859 341 SASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDIDSHELYAVIESMPAE-TNMTPADVAEN 419 (504)
Q Consensus 341 ~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~~~~~~~~~i~~l~~~-~~~s~a~i~~~ 419 (504)
. ..+++||+|||+++.|||+++||||||..|.++.|+.++|..|++.++..........+..++.. .|++++||..+
T Consensus 151 ~--~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~l 228 (476)
T 2ce7_A 151 S--KEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENL 228 (476)
T ss_dssp G--GGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHH
T ss_pred C--CCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHH
Confidence 4 35699999999999999999999999999999999999999999998864322111112334444 49999999877
Q ss_pred hC
Q 037859 420 LM 421 (504)
Q Consensus 420 l~ 421 (504)
+.
T Consensus 229 v~ 230 (476)
T 2ce7_A 229 VN 230 (476)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 13
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.93 E-value=6.8e-25 Score=214.72 Aligned_cols=196 Identities=26% Similarity=0.351 Sum_probs=147.7
Q ss_pred CCCccccccccChhHHHHHHHhh----------------cccccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccC---
Q 037859 203 EHPATFDTLAMETKKKEEIKKDL----------------KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQ--- 263 (504)
Q Consensus 203 ~~p~~f~~~~~~~~~k~~i~~~l----------------~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~--- 263 (504)
..+.+|+++++.+..|+.+.+.+ ++|+|||||||||||++++++|+.++.+++.+++..+.
T Consensus 6 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~~ 85 (257)
T 1lv7_A 6 QIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMF 85 (257)
T ss_dssp SSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSC
T ss_pred CCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHHh
Confidence 44667999999999888776543 67899999999999999999999999999999887652
Q ss_pred ---ChHHHHHHHHhcc--CCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcC
Q 037859 264 ---DNSELRSLLIDTS--SKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDG 338 (504)
Q Consensus 264 ---~~~~l~~l~~~~~--~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg 338 (504)
....++.+|..+. .++|+||||||.+....+.. ..++.......++.+|..+|+
T Consensus 86 ~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~---------------------~~~~~~~~~~~~~~ll~~l~~ 144 (257)
T 1lv7_A 86 VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAG---------------------LGGGHDEREQTLNQMLVEMDG 144 (257)
T ss_dssp CCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTT---------------------SCCTTCHHHHHHHHHHHHHHT
T ss_pred hhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCC---------------------cCCCchHHHHHHHHHHHHhhC
Confidence 3456777777653 57999999999974211100 011223345678999999999
Q ss_pred ccccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCcCCcchHHHHhcCccC-CCCCHHHHH
Q 037859 339 LWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDIDSHELYAVIESMPAE-TNMTPADVA 417 (504)
Q Consensus 339 ~~~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~~~~~~~~~i~~l~~~-~~~s~a~i~ 417 (504)
+.. ...+++|+|||+++.+|++++|||||+..++++.|+.++|..|++.++..........+..++.. .|++++||.
T Consensus 145 ~~~--~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~ 222 (257)
T 1lv7_A 145 FEG--NEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLA 222 (257)
T ss_dssp CCS--SSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHH
T ss_pred ccc--CCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHH
Confidence 853 45689999999999999999999999999999999999999999998754321110111222333 488999998
Q ss_pred HhhC
Q 037859 418 ENLM 421 (504)
Q Consensus 418 ~~l~ 421 (504)
..+.
T Consensus 223 ~l~~ 226 (257)
T 1lv7_A 223 NLVN 226 (257)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 14
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.92 E-value=3.5e-25 Score=216.53 Aligned_cols=194 Identities=24% Similarity=0.337 Sum_probs=140.0
Q ss_pred ccccccccChhHHHHHHHhh----------------cccccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccC------
Q 037859 206 ATFDTLAMETKKKEEIKKDL----------------KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQ------ 263 (504)
Q Consensus 206 ~~f~~~~~~~~~k~~i~~~l----------------~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~------ 263 (504)
.+|+++++.+..|+.+.+.+ ++++|||||||||||++|+++|++++.+++.+++..+.
T Consensus 3 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~ 82 (262)
T 2qz4_A 3 VSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGL 82 (262)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTTH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccCh
Confidence 46888888888888776543 57899999999999999999999999999999988753
Q ss_pred ChHHHHHHHHhcc--CCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccc
Q 037859 264 DNSELRSLLIDTS--SKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWS 341 (504)
Q Consensus 264 ~~~~l~~l~~~~~--~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~ 341 (504)
....++.+|..+. .++||||||||.+.. .+... ............+..+|+.+++...
T Consensus 83 ~~~~~~~~~~~a~~~~~~vl~iDeid~l~~---~~~~~-----------------~~~~~~~~~~~~l~~ll~~~~~~~~ 142 (262)
T 2qz4_A 83 GAARVRSLFKEARARAPCIVYIDEIDAVGK---KRSTT-----------------MSGFSNTEEEQTLNQLLVEMDGMGT 142 (262)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEECC---------------------------------------CHHHHHHHHHHHTCCT
T ss_pred hHHHHHHHHHHHHhcCCeEEEEeCcchhhc---ccccc-----------------ccCccchhHHHHHHHHHHHhhCcCC
Confidence 2245666776553 589999999999752 11100 0001122344578899999998743
Q ss_pred cCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCcCCcchHH--HHhcCccC-CCCCHHHHHH
Q 037859 342 ASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDIDSHELYA--VIESMPAE-TNMTPADVAE 418 (504)
Q Consensus 342 ~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~~~~~~~~--~i~~l~~~-~~~s~a~i~~ 418 (504)
...+++|+|||+++.||++++|||||+..++++.|+.++|..|++.++......... ....++.. .|+++++|..
T Consensus 143 --~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~ 220 (262)
T 2qz4_A 143 --TDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIAN 220 (262)
T ss_dssp --TCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHH
T ss_pred --CCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHH
Confidence 456899999999999999999999999999999999999999999988543322211 12344444 4899999987
Q ss_pred hhC
Q 037859 419 NLM 421 (504)
Q Consensus 419 ~l~ 421 (504)
++.
T Consensus 221 l~~ 223 (262)
T 2qz4_A 221 ICN 223 (262)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 15
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.92 E-value=6.5e-25 Score=222.41 Aligned_cols=191 Identities=23% Similarity=0.321 Sum_probs=150.6
Q ss_pred CCCccccccccChhHHHHHHHhh----------------cccccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccC---
Q 037859 203 EHPATFDTLAMETKKKEEIKKDL----------------KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQ--- 263 (504)
Q Consensus 203 ~~p~~f~~~~~~~~~k~~i~~~l----------------~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~--- 263 (504)
..+.+|+++++.+..|+.|.+.+ ++|+|||||||||||++|+++|++++.+++.++++.+.
T Consensus 12 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~ 91 (322)
T 3eie_A 12 KPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKW 91 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTTT
T ss_pred CCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhcc
Confidence 34567899999999999998877 57899999999999999999999999999999987642
Q ss_pred ---ChHHHHHHHHhc--cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcC
Q 037859 264 ---DNSELRSLLIDT--SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDG 338 (504)
Q Consensus 264 ---~~~~l~~l~~~~--~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg 338 (504)
....++.+|..+ ..|+||||||||.+.. .+. .+.........+.||..+|+
T Consensus 92 ~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~---~~~---------------------~~~~~~~~~~~~~ll~~l~~ 147 (322)
T 3eie_A 92 MGESEKLVKQLFAMARENKPSIIFIDQVDALTG---TRG---------------------EGESEASRRIKTELLVQMNG 147 (322)
T ss_dssp GGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSC---C---------------------------CCTHHHHHHHHHHHGG
T ss_pred cchHHHHHHHHHHHHHhcCCeEEEechhhhhhc---cCC---------------------CCcchHHHHHHHHHHHHhcc
Confidence 234466676654 4689999999999753 111 11223356678999999999
Q ss_pred ccccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCcCCcc-hHHHHhcCccCC-CCCHHHH
Q 037859 339 LWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDIDSHE-LYAVIESMPAET-NMTPADV 416 (504)
Q Consensus 339 ~~~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~~~~~-~~~~i~~l~~~~-~~s~a~i 416 (504)
+.. ....++||+|||+++.||++|+| ||+..|+++.|+.++|..|++.++...... ....+..++..+ |+++++|
T Consensus 148 ~~~-~~~~v~vi~atn~~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di 224 (322)
T 3eie_A 148 VGN-DSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDI 224 (322)
T ss_dssp GGT-SCCCEEEEEEESCGGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHH
T ss_pred ccc-cCCceEEEEecCChhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHH
Confidence 853 24568999999999999999999 999999999999999999999998765433 233456666655 8999999
Q ss_pred HHhh
Q 037859 417 AENL 420 (504)
Q Consensus 417 ~~~l 420 (504)
..++
T Consensus 225 ~~l~ 228 (322)
T 3eie_A 225 AVVV 228 (322)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8664
No 16
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.92 E-value=3.7e-25 Score=219.51 Aligned_cols=197 Identities=25% Similarity=0.310 Sum_probs=148.5
Q ss_pred cCCCccccccccChhHHHHHHHhh-----------------cccccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccCC
Q 037859 202 FEHPATFDTLAMETKKKEEIKKDL-----------------KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQD 264 (504)
Q Consensus 202 ~~~p~~f~~~~~~~~~k~~i~~~l-----------------~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~ 264 (504)
..++.+|+++++.+..++.|.+.+ ++++|||||||||||++|+++|+.++.+++.+++..+..
T Consensus 10 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~ 89 (285)
T 3h4m_A 10 ERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVK 89 (285)
T ss_dssp SSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHH
Confidence 344567899999999998887766 578999999999999999999999999999999877531
Q ss_pred ------hHHHHHHHHhc--cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhh
Q 037859 265 ------NSELRSLLIDT--SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFI 336 (504)
Q Consensus 265 ------~~~l~~l~~~~--~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~l 336 (504)
...+..+|..+ ..|+||||||||.++. ++.. ...++.......+..+++.+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~---~~~~------------------~~~~~~~~~~~~l~~ll~~~ 148 (285)
T 3h4m_A 90 KFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAA---KRTD------------------ALTGGDREVQRTLMQLLAEM 148 (285)
T ss_dssp CSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHB---CCSS------------------SCCGGGGHHHHHHHHHHHHH
T ss_pred hccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcc---cCcc------------------ccCCccHHHHHHHHHHHHHh
Confidence 23455666544 4689999999999753 1110 00112233456788899999
Q ss_pred cCccccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCcCCcchHHHHhcCccC-CCCCHHH
Q 037859 337 DGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDIDSHELYAVIESMPAE-TNMTPAD 415 (504)
Q Consensus 337 Dg~~~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~~~~~~~~~i~~l~~~-~~~s~a~ 415 (504)
+++.. ..+++||+|||.++.+|++++|||||+..+.++.|+.+++..|++.++..........+..++.. .|+++++
T Consensus 149 ~~~~~--~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~ 226 (285)
T 3h4m_A 149 DGFDA--RGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAE 226 (285)
T ss_dssp HTTCS--SSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHH
T ss_pred hCCCC--CCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHH
Confidence 88743 45689999999999999999999999999999999999999999998764332211112333333 4889999
Q ss_pred HHHhhC
Q 037859 416 VAENLM 421 (504)
Q Consensus 416 i~~~l~ 421 (504)
|..++.
T Consensus 227 i~~l~~ 232 (285)
T 3h4m_A 227 LKAICT 232 (285)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 886543
No 17
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.91 E-value=2.5e-24 Score=221.17 Aligned_cols=189 Identities=23% Similarity=0.330 Sum_probs=145.7
Q ss_pred CccccccccChhHHHHHHHhh----------------cccccccCCCCCcHHHHHHHHHHhcCCcEEEEecccc------
Q 037859 205 PATFDTLAMETKKKEEIKKDL----------------KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTV------ 262 (504)
Q Consensus 205 p~~f~~~~~~~~~k~~i~~~l----------------~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~------ 262 (504)
+.+|+++++.+..|+.|.+.+ ++|+|||||||||||++|+++|++++.+++.+++..+
T Consensus 47 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~~~g 126 (355)
T 2qp9_X 47 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMG 126 (355)
T ss_dssp CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSCC--
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhhhcc
Confidence 456778888888888777665 4689999999999999999999999999999988764
Q ss_pred CChHHHHHHHHhc--cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCcc
Q 037859 263 QDNSELRSLLIDT--SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLW 340 (504)
Q Consensus 263 ~~~~~l~~l~~~~--~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~ 340 (504)
.....++.+|..+ ..++||||||||.+.. .+. .+........++.||..||++.
T Consensus 127 ~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~---~r~---------------------~~~~~~~~~~~~~ll~~l~~~~ 182 (355)
T 2qp9_X 127 ESEKLVKQLFAMARENKPSIIFIDQVDALTG---TRG---------------------EGESEASRRIKTELLVQMNGVG 182 (355)
T ss_dssp -CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------------------------------CTHHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHHHcCCeEEEEechHhhcc---cCC---------------------CCcchHHHHHHHHHHHHhhccc
Confidence 1345567777655 3789999999999742 211 1122345667889999999875
Q ss_pred ccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCcCCcc-hHHHHhcCccCC-CCCHHHHHH
Q 037859 341 SASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDIDSHE-LYAVIESMPAET-NMTPADVAE 418 (504)
Q Consensus 341 ~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~~~~~-~~~~i~~l~~~~-~~s~a~i~~ 418 (504)
.. ...++||+|||+++.||++++| ||+..|+++.|+.++|..|++.++...... ....+..++..+ |+++++|..
T Consensus 183 ~~-~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~ 259 (355)
T 2qp9_X 183 ND-SQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAV 259 (355)
T ss_dssp ----CCEEEEEEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHH
T ss_pred cc-CCCeEEEeecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHH
Confidence 32 3568999999999999999999 999999999999999999999998755432 233455566544 899999986
Q ss_pred hh
Q 037859 419 NL 420 (504)
Q Consensus 419 ~l 420 (504)
++
T Consensus 260 l~ 261 (355)
T 2qp9_X 260 VV 261 (355)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 18
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.91 E-value=8.1e-24 Score=225.42 Aligned_cols=195 Identities=26% Similarity=0.348 Sum_probs=148.1
Q ss_pred CCccccccccChhHHHHHHHhh----------------cccccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccCC---
Q 037859 204 HPATFDTLAMETKKKEEIKKDL----------------KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQD--- 264 (504)
Q Consensus 204 ~p~~f~~~~~~~~~k~~i~~~l----------------~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~--- 264 (504)
.+.+|+++++.++.|+.+.+.+ ++|+||+||||||||+|+++||++++.+++.+++..+..
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~~ 105 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFV 105 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSCT
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhhh
Confidence 4567899999988887766543 678999999999999999999999999999999877532
Q ss_pred ---hHHHHHHHHhcc--CCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCc
Q 037859 265 ---NSELRSLLIDTS--SKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGL 339 (504)
Q Consensus 265 ---~~~l~~l~~~~~--~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~ 339 (504)
...++.+|..+. .|+|+||||||.+....+.. ..++......+++.||..|||.
T Consensus 106 g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~---------------------~~~~~~e~~~~l~~LL~~Ldg~ 164 (499)
T 2dhr_A 106 GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSG---------------------VGGGNDEREQTLNQLLVEMDGF 164 (499)
T ss_dssp THHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSS---------------------TTTSSHHHHHHHHHHHHHGGGC
T ss_pred hhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccC---------------------cCCCcHHHHHHHHHHHHHhccc
Confidence 245677787764 58999999999864211100 0112233456889999999998
Q ss_pred cccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCcCCcchHHHHhcCccCC-CCCHHHHHH
Q 037859 340 WSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDIDSHELYAVIESMPAET-NMTPADVAE 418 (504)
Q Consensus 340 ~~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~~~~~~~~~i~~l~~~~-~~s~a~i~~ 418 (504)
.. +..+++|++||+++.|||+|+||||||.+|.++.|+.++|..|++.++..........+..++..+ |++++||..
T Consensus 165 ~~--~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~ 242 (499)
T 2dhr_A 165 EK--DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLEN 242 (499)
T ss_dssp CS--SCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHH
T ss_pred cc--CccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHH
Confidence 53 455899999999999999999999999999999999999999999887532211111122334434 999999987
Q ss_pred hhC
Q 037859 419 NLM 421 (504)
Q Consensus 419 ~l~ 421 (504)
++.
T Consensus 243 lv~ 245 (499)
T 2dhr_A 243 LLN 245 (499)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
No 19
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.91 E-value=1.1e-23 Score=222.77 Aligned_cols=190 Identities=23% Similarity=0.302 Sum_probs=147.1
Q ss_pred CCccccccccChhHHHHHHHhh----------------cccccccCCCCCcHHHHHHHHHHhc-CCcEEEEeccccC---
Q 037859 204 HPATFDTLAMETKKKEEIKKDL----------------KKGYLLYGPPGTGKSTMIAAMANFL-NYDVYDLELTTVQ--- 263 (504)
Q Consensus 204 ~p~~f~~~~~~~~~k~~i~~~l----------------~rg~LL~GPpGtGKTsla~aiA~~l-~~~i~~l~~~~~~--- 263 (504)
.+.+|+++++.+..|+.|.+.+ ++|+|||||||||||++|+++|+++ +.+++.++++.+.
T Consensus 129 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~~ 208 (444)
T 2zan_A 129 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKW 208 (444)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC------
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhhh
Confidence 3456888888888888887654 4789999999999999999999999 8899999887652
Q ss_pred ---ChHHHHHHHHhc--cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcC
Q 037859 264 ---DNSELRSLLIDT--SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDG 338 (504)
Q Consensus 264 ---~~~~l~~l~~~~--~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg 338 (504)
....++.+|..+ ..|+||||||||.++. .+. ..........++.||..|||
T Consensus 209 ~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~---~~~---------------------~~~~~~~~~~~~~lL~~l~~ 264 (444)
T 2zan_A 209 LGESEKLVKNLFQLARENKPSIIFIDEIDSLCG---SRS---------------------ENESEAARRIKTEFLVQMQG 264 (444)
T ss_dssp ---CCCTHHHHHHHHHHSCSEEEEESCTTTTCC---CSS---------------------CCCCGGGHHHHHHHHTTTTC
T ss_pred cchHHHHHHHHHHHHHHcCCeEEEEechHhhcc---CCC---------------------CccccHHHHHHHHHHHHHhC
Confidence 223466666554 4789999999999752 211 11223456788999999999
Q ss_pred ccccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCcCCcc-hHHHHhcCccCC-CCCHHHH
Q 037859 339 LWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDIDSHE-LYAVIESMPAET-NMTPADV 416 (504)
Q Consensus 339 ~~~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~~~~~-~~~~i~~l~~~~-~~s~a~i 416 (504)
+.. ...+++||+|||+++.|||+|+| ||+..|+++.|+.++|..|++.++...... ....+..++..+ |+|++||
T Consensus 265 ~~~-~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl 341 (444)
T 2zan_A 265 VGV-DNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADI 341 (444)
T ss_dssp SSC-CCSSCEEEEEESCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHH
T ss_pred ccc-CCCCEEEEecCCCccccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHH
Confidence 753 24568999999999999999999 999999999999999999999998654432 223455566544 9999999
Q ss_pred HHhh
Q 037859 417 AENL 420 (504)
Q Consensus 417 ~~~l 420 (504)
..++
T Consensus 342 ~~l~ 345 (444)
T 2zan_A 342 SIIV 345 (444)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8654
No 20
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.90 E-value=1.5e-24 Score=213.35 Aligned_cols=195 Identities=27% Similarity=0.364 Sum_probs=140.2
Q ss_pred CccccccccChhHHHHHHHhh----------------cccccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccC-----
Q 037859 205 PATFDTLAMETKKKEEIKKDL----------------KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQ----- 263 (504)
Q Consensus 205 p~~f~~~~~~~~~k~~i~~~l----------------~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~----- 263 (504)
+..|+++++.+..++.+.+.+ ++|+|||||||||||++|+++|++++.+++.+++..+.
T Consensus 7 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~ 86 (268)
T 2r62_A 7 NVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVG 86 (268)
T ss_dssp CCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSCSS
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhhcc
Confidence 446888888888887776654 57899999999999999999999999999998877642
Q ss_pred -ChHHHHHHHHhc--cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCcc
Q 037859 264 -DNSELRSLLIDT--SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLW 340 (504)
Q Consensus 264 -~~~~l~~l~~~~--~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~ 340 (504)
....++.+|..+ ..++||||||+|.+.. .+... +...........++.||+.+|+..
T Consensus 87 ~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~---~~~~~-----------------~~~~~~~~~~~~~~~ll~~l~~~~ 146 (268)
T 2r62_A 87 LGASRVRDLFETAKKQAPSIIFIDEIDAIGK---SRAAG-----------------GVVSGNDEREQTLNQLLAEMDGFG 146 (268)
T ss_dssp SCSSSSSTTHHHHHHSCSCEEEESCGGGTTC------------------------------CCCSCSSTTTTTTTTTCSS
T ss_pred hHHHHHHHHHHHHHhcCCeEEEEeChhhhcc---ccccc-----------------ccCCCchhHHHHHHHHHHHhhCcc
Confidence 122334444443 3689999999999742 11000 000111223346788999999874
Q ss_pred ccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCcCCcchHHHHhcCccCC-CCCHHHHHHh
Q 037859 341 SASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDIDSHELYAVIESMPAET-NMTPADVAEN 419 (504)
Q Consensus 341 ~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~~~~~~~~~i~~l~~~~-~~s~a~i~~~ 419 (504)
+ ....++||+|||.++.||++++|||||+..|+++.|+.++|..+++.++..........+..++..+ |+++++|..+
T Consensus 147 ~-~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l 225 (268)
T 2r62_A 147 S-ENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANI 225 (268)
T ss_dssp C-SCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHH
T ss_pred c-CCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHH
Confidence 3 2345899999999999999999999999999999999999999999988643221111234444444 7889888765
Q ss_pred h
Q 037859 420 L 420 (504)
Q Consensus 420 l 420 (504)
+
T Consensus 226 ~ 226 (268)
T 2r62_A 226 I 226 (268)
T ss_dssp H
T ss_pred H
Confidence 4
No 21
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.90 E-value=1.2e-23 Score=224.43 Aligned_cols=192 Identities=25% Similarity=0.342 Sum_probs=150.1
Q ss_pred CCccccccccChhHHHHHHHhh-----------------cccccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccC---
Q 037859 204 HPATFDTLAMETKKKEEIKKDL-----------------KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQ--- 263 (504)
Q Consensus 204 ~p~~f~~~~~~~~~k~~i~~~l-----------------~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~--- 263 (504)
.+..|+.+++....++.|.+.+ ++|+|||||||||||++|+++|++++.+++.+++..+.
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence 3457899999999998887766 47899999999999999999999999999999987652
Q ss_pred ---ChHHHHHHHHhc--cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcC
Q 037859 264 ---DNSELRSLLIDT--SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDG 338 (504)
Q Consensus 264 ---~~~~l~~l~~~~--~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg 338 (504)
....++.+|..+ ..|+||||||||.+.. .+. ..........++.||..||+
T Consensus 279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~---~~~---------------------~~~~~~~~~~~~~LL~~ld~ 334 (489)
T 3hu3_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAP---KRE---------------------KTHGEVERRIVSQLLTLMDG 334 (489)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCB---CTT---------------------SCCCHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHhcCCcEEEecchhhhcc---ccc---------------------cccchHHHHHHHHHHHHhhc
Confidence 224567777665 3689999999999752 111 11233456788999999998
Q ss_pred ccccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCcCCcchHHHHhcCccC-CCCCHHHHH
Q 037859 339 LWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDIDSHELYAVIESMPAE-TNMTPADVA 417 (504)
Q Consensus 339 ~~~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~~~~~~~~~i~~l~~~-~~~s~a~i~ 417 (504)
... ...++||+|||+++.||+++.|||||+..|+++.|+.++|..|++.++..........+..++.. .++++++|.
T Consensus 335 ~~~--~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~ 412 (489)
T 3hu3_A 335 LKQ--RAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLA 412 (489)
T ss_dssp SCT--TSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHH
T ss_pred ccc--CCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHH
Confidence 743 45689999999999999999999999999999999999999999998864322211122333433 499999998
Q ss_pred HhhC
Q 037859 418 ENLM 421 (504)
Q Consensus 418 ~~l~ 421 (504)
.++.
T Consensus 413 ~L~~ 416 (489)
T 3hu3_A 413 ALCS 416 (489)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6643
No 22
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.89 E-value=5.1e-23 Score=201.01 Aligned_cols=195 Identities=26% Similarity=0.343 Sum_probs=140.7
Q ss_pred CCccccccccChhHHHHHHHhh----------------cccccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccC----
Q 037859 204 HPATFDTLAMETKKKEEIKKDL----------------KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQ---- 263 (504)
Q Consensus 204 ~p~~f~~~~~~~~~k~~i~~~l----------------~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~---- 263 (504)
.+.+|+++++.++.++++.+.. ++|++|+||||||||+|++++|+.++.+++.++...+.
T Consensus 11 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~~~ 90 (254)
T 1ixz_A 11 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFV 90 (254)
T ss_dssp CSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSCT
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHHHh
Confidence 3457899999888877665433 67899999999999999999999999999888765431
Q ss_pred --ChHHHHHHHHhcc--CCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCc
Q 037859 264 --DNSELRSLLIDTS--SKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGL 339 (504)
Q Consensus 264 --~~~~l~~l~~~~~--~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~ 339 (504)
....+..+|.... .+++++|||||.+....+.. ...........++.+++.++|.
T Consensus 91 ~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~---------------------~~~~~~~~~~~~~~ll~~l~g~ 149 (254)
T 1ixz_A 91 GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSG---------------------VGGGNDEREQTLNQLLVEMDGF 149 (254)
T ss_dssp THHHHHHHHHHHHHTTSSSEEEEEETHHHHHC------------------------------CHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCcc---------------------ccccchHHHHHHHHHHHHHhCC
Confidence 1234667777653 58999999999864211100 0011223456788999999987
Q ss_pred cccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCcCCcchHHHHhcCccCC-CCCHHHHHH
Q 037859 340 WSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDIDSHELYAVIESMPAET-NMTPADVAE 418 (504)
Q Consensus 340 ~~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~~~~~~~~~i~~l~~~~-~~s~a~i~~ 418 (504)
.. +..++++++||+++.|||+++||||||.+|+++.|+.++|..|++.+...........+..++..+ |++++||..
T Consensus 150 ~~--~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~ 227 (254)
T 1ixz_A 150 EK--DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLEN 227 (254)
T ss_dssp CT--TCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHH
T ss_pred CC--CCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHH
Confidence 43 345788899999999999999999999999999999999999999886432211111122333333 888888876
Q ss_pred hhC
Q 037859 419 NLM 421 (504)
Q Consensus 419 ~l~ 421 (504)
.+.
T Consensus 228 ~~~ 230 (254)
T 1ixz_A 228 LLN 230 (254)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 23
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.89 E-value=7.7e-23 Score=212.49 Aligned_cols=195 Identities=25% Similarity=0.344 Sum_probs=149.4
Q ss_pred ecCCCccccccccChhHHHHHHHhh----------------cccccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccC-
Q 037859 201 FFEHPATFDTLAMETKKKEEIKKDL----------------KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQ- 263 (504)
Q Consensus 201 ~~~~p~~f~~~~~~~~~k~~i~~~l----------------~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~- 263 (504)
...+|..|+++++.+..++.|.+.+ ++++|||||||||||++|+++|++++.+++.+++..+.
T Consensus 107 ~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~ 186 (389)
T 3vfd_A 107 DNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTS 186 (389)
T ss_dssp CCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC--
T ss_pred ccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhc
Confidence 3446778999999999999998877 47899999999999999999999999999999998763
Q ss_pred -----ChHHHHHHHHhc--cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhh
Q 037859 264 -----DNSELRSLLIDT--SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFI 336 (504)
Q Consensus 264 -----~~~~l~~l~~~~--~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~l 336 (504)
....++.+|..+ ..++||||||||.++. .+. .+........+..||..+
T Consensus 187 ~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~---~~~---------------------~~~~~~~~~~~~~ll~~l 242 (389)
T 3vfd_A 187 KYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLC---ERR---------------------EGEHDASRRLKTEFLIEF 242 (389)
T ss_dssp -----CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------------------------------CTHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEEEECchhhcc---cCC---------------------CccchHHHHHHHHHHHHh
Confidence 234456666554 4689999999999752 111 112233566788999999
Q ss_pred cCccccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCcCCcch-HHHHhcCccCC-CCCHH
Q 037859 337 DGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDIDSHEL-YAVIESMPAET-NMTPA 414 (504)
Q Consensus 337 Dg~~~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~~~~~~-~~~i~~l~~~~-~~s~a 414 (504)
+|........++||+|||+++.||++++| ||+.+|+++.|+.+++..|++.++......+ ...+..++... |++++
T Consensus 243 ~~~~~~~~~~v~vI~atn~~~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~ 320 (389)
T 3vfd_A 243 DGVQSAGDDRVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGS 320 (389)
T ss_dssp HHHC-----CEEEEEEESCGGGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHH
T ss_pred hcccccCCCCEEEEEecCCchhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHH
Confidence 98865545678999999999999999999 9999999999999999999999886543332 23445555544 89999
Q ss_pred HHHHhhC
Q 037859 415 DVAENLM 421 (504)
Q Consensus 415 ~i~~~l~ 421 (504)
+|..++.
T Consensus 321 ~l~~L~~ 327 (389)
T 3vfd_A 321 DLTALAK 327 (389)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9977643
No 24
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.89 E-value=1.1e-23 Score=210.63 Aligned_cols=143 Identities=17% Similarity=0.158 Sum_probs=106.0
Q ss_pred cccccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccC------ChHHHHHHHHhc------cCCeEEEEeccccccccc
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQ------DNSELRSLLIDT------SSKSILVIEDIDCSLDLT 293 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~------~~~~l~~l~~~~------~~~~Il~iDeiD~~~~~~ 293 (504)
|+|+|||||||||||++|+++|++++.+++.++++.+. ....++.+|..+ ..||||||||||.++.
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~~-- 113 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAG-- 113 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC------
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhhcC--
Confidence 78999999999999999999999999999999987652 224566777655 2789999999999753
Q ss_pred ccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccc---------cCCCceEEEEecCCCCCCChhhh
Q 037859 294 GQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWS---------ASGEERIIVFTTNYVDKLDPALI 364 (504)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~---------~~~~~~ivI~tTN~~e~Ld~ALl 364 (504)
++. +...+........+.||+.||+... ....+++||+|||+++.||+||+
T Consensus 114 -~~~-------------------~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~ 173 (293)
T 3t15_A 114 -RMG-------------------GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLI 173 (293)
T ss_dssp ------------------------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHH
T ss_pred -CCC-------------------CCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHh
Confidence 110 0011222345677899999986531 12346899999999999999999
Q ss_pred cCCCceeEEEecCCCHHHHHHHHHHhcC
Q 037859 365 RRGRMDKHIEMSYCCFEAFKVLAKNYLD 392 (504)
Q Consensus 365 RpGR~d~~I~~~~p~~e~~~~i~~~~l~ 392 (504)
||||||.+|+ .|+.++|..|++.++.
T Consensus 174 R~~R~d~~i~--~P~~~~r~~Il~~~~~ 199 (293)
T 3t15_A 174 RDGRMEKFYW--APTREDRIGVCTGIFR 199 (293)
T ss_dssp HHHHEEEEEE--CCCHHHHHHHHHHHHG
T ss_pred CCCCCceeEe--CcCHHHHHHHHHHhcc
Confidence 9999999887 5799999999998875
No 25
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.89 E-value=1.3e-22 Score=208.61 Aligned_cols=191 Identities=25% Similarity=0.367 Sum_probs=144.7
Q ss_pred CccccccccChhHHHHHHHhh----------------cccccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccCC----
Q 037859 205 PATFDTLAMETKKKEEIKKDL----------------KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQD---- 264 (504)
Q Consensus 205 p~~f~~~~~~~~~k~~i~~~l----------------~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~---- 264 (504)
|.+|+++++.+..++.|.+.+ ++++|||||||||||++|+++|++++.+++.++++.+..
T Consensus 80 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~~g 159 (357)
T 3d8b_A 80 PVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVG 159 (357)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSSTT
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhccccc
Confidence 556788888888888877665 578999999999999999999999999999999987632
Q ss_pred --hHHHHHHHHhc--cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCcc
Q 037859 265 --NSELRSLLIDT--SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLW 340 (504)
Q Consensus 265 --~~~l~~l~~~~--~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~ 340 (504)
...++.+|..+ ..++||||||||.++. .+. .+........++.||..++|..
T Consensus 160 ~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~---~~~---------------------~~~~~~~~~~~~~lL~~l~~~~ 215 (357)
T 3d8b_A 160 EGEKMVRALFAVARCQQPAVIFIDEIDSLLS---QRG---------------------DGEHESSRRIKTEFLVQLDGAT 215 (357)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEEETHHHHTB---C---------------------------CHHHHHHHHHHHHHHC--
T ss_pred hHHHHHHHHHHHHHhcCCeEEEEeCchhhhc---cCC---------------------CCcchHHHHHHHHHHHHHhccc
Confidence 23455666544 4689999999999752 110 1123345667889999999876
Q ss_pred ccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCcCCcch-HHHHhcCccCC-CCCHHHHHH
Q 037859 341 SASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDIDSHEL-YAVIESMPAET-NMTPADVAE 418 (504)
Q Consensus 341 ~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~~~~~~-~~~i~~l~~~~-~~s~a~i~~ 418 (504)
......++||+|||.++.||++++| ||+..++++.|+.+++..+++.++....... ...+..++..+ |+++++|..
T Consensus 216 ~~~~~~v~vI~atn~~~~l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~ 293 (357)
T 3d8b_A 216 TSSEDRILVVGATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQ 293 (357)
T ss_dssp --CCCCEEEEEEESCGGGBCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHH
T ss_pred ccCCCCEEEEEecCChhhCCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHH
Confidence 5445678999999999999999999 9999999999999999999998875433222 23445555544 899999987
Q ss_pred hhC
Q 037859 419 NLM 421 (504)
Q Consensus 419 ~l~ 421 (504)
++.
T Consensus 294 l~~ 296 (357)
T 3d8b_A 294 LCR 296 (357)
T ss_dssp HHH
T ss_pred HHH
Confidence 644
No 26
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.88 E-value=1.1e-24 Score=245.50 Aligned_cols=193 Identities=22% Similarity=0.348 Sum_probs=145.3
Q ss_pred ccccccccChhHHHHHHHhh-----------------cccccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccC-----
Q 037859 206 ATFDTLAMETKKKEEIKKDL-----------------KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQ----- 263 (504)
Q Consensus 206 ~~f~~~~~~~~~k~~i~~~l-----------------~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~----- 263 (504)
..|+.+++.++.|+.+.+.+ ++++|||||||||||++|+++|++++.+++.++++.+.
T Consensus 474 v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g 553 (806)
T 1ypw_A 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFG 553 (806)
T ss_dssp CSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTT
T ss_pred ccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhhhcC
Confidence 45777777788888777665 56799999999999999999999999999999887752
Q ss_pred -ChHHHHHHHHhc--cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCcc
Q 037859 264 -DNSELRSLLIDT--SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLW 340 (504)
Q Consensus 264 -~~~~l~~l~~~~--~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~ 340 (504)
....++.+|..+ ..||||||||||.++...+.. ..........+++.||+.|||+.
T Consensus 554 ~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~---------------------~~~~~~~~~~v~~~LL~~ld~~~ 612 (806)
T 1ypw_A 554 ESEANVREIFDKARQAAPCVLFFDELDSIAKARGGN---------------------IGDGGGAADRVINQILTEMDGMS 612 (806)
T ss_dssp TSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTC---------------------CSHHHHHHHHHHHHHHTTCC---
T ss_pred ccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCC---------------------CCCcchhHHHHHHHHHHHHhccc
Confidence 345678888765 368999999999975321110 00012235678999999999985
Q ss_pred ccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCcCCcchHHHHhcCccCC-CCCHHHHHHh
Q 037859 341 SASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDIDSHELYAVIESMPAET-NMTPADVAEN 419 (504)
Q Consensus 341 ~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~~~~~~~~~i~~l~~~~-~~s~a~i~~~ 419 (504)
. ...++||+|||+++.||||++|||||+.+|++++|+.+++..|++.++..........+..++..+ ++|+++|..+
T Consensus 613 ~--~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~l 690 (806)
T 1ypw_A 613 T--KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEI 690 (806)
T ss_dssp -----CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHHHH
T ss_pred c--cCCeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCCcccCHHHHHHhccccCHHHHHHH
Confidence 4 456899999999999999999999999999999999999999999998653222122345566544 8999999876
Q ss_pred hC
Q 037859 420 LM 421 (504)
Q Consensus 420 l~ 421 (504)
+.
T Consensus 691 ~~ 692 (806)
T 1ypw_A 691 CQ 692 (806)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 27
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.88 E-value=2.6e-22 Score=200.31 Aligned_cols=192 Identities=21% Similarity=0.332 Sum_probs=142.6
Q ss_pred CCccccccccChhHHHHHHHhh----------------cccccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccC----
Q 037859 204 HPATFDTLAMETKKKEEIKKDL----------------KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQ---- 263 (504)
Q Consensus 204 ~p~~f~~~~~~~~~k~~i~~~l----------------~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~---- 263 (504)
.+.+|+++++.+..++.+.+.+ ++++||+||||||||++|+++|++++.+++.++++.+.
T Consensus 16 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~ 95 (297)
T 3b9p_A 16 AKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYV 95 (297)
T ss_dssp SCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSSSC
T ss_pred CCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhccc
Confidence 3567888999999988887765 47899999999999999999999999999999988753
Q ss_pred -C-hHHHHHHHHhc--cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCc
Q 037859 264 -D-NSELRSLLIDT--SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGL 339 (504)
Q Consensus 264 -~-~~~l~~l~~~~--~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~ 339 (504)
. ...++.+|..+ ..|+||||||+|.++..... ..........+.||..+|+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~------------------------~~~~~~~~~~~~ll~~l~~~ 151 (297)
T 3b9p_A 96 GDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSS------------------------SEHEASRRLKTEFLVEFDGL 151 (297)
T ss_dssp SCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----------------------------CCSHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHcCCcEEEeccHHHhcccccc------------------------CcchHHHHHHHHHHHHHhcc
Confidence 1 23455555443 47899999999997531110 01122345678899999987
Q ss_pred ccc-CCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCcCCcch-HHHHhcCccC-CCCCHHHH
Q 037859 340 WSA-SGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDIDSHEL-YAVIESMPAE-TNMTPADV 416 (504)
Q Consensus 340 ~~~-~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~~~~~~-~~~i~~l~~~-~~~s~a~i 416 (504)
... .+..++||+|||+++.||++++| ||+..++++.|+.+++..|++.++....... ...+..++.. .|+++++|
T Consensus 152 ~~~~~~~~v~vi~~tn~~~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l 229 (297)
T 3b9p_A 152 PGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDL 229 (297)
T ss_dssp C------CEEEEEEESCGGGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHH
T ss_pred cccCCCCcEEEEeecCChhhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHH
Confidence 532 22458899999999999999999 9999999999999999999998875433222 2234444443 48999998
Q ss_pred HHhhC
Q 037859 417 AENLM 421 (504)
Q Consensus 417 ~~~l~ 421 (504)
..++.
T Consensus 230 ~~l~~ 234 (297)
T 3b9p_A 230 TALAK 234 (297)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76543
No 28
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.87 E-value=5.2e-22 Score=196.69 Aligned_cols=195 Identities=26% Similarity=0.338 Sum_probs=140.2
Q ss_pred CCccccccccChhHHHHHHHhh----------------cccccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccC----
Q 037859 204 HPATFDTLAMETKKKEEIKKDL----------------KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQ---- 263 (504)
Q Consensus 204 ~p~~f~~~~~~~~~k~~i~~~l----------------~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~---- 263 (504)
.+.+|+++++.++.++++.+.. ++|++|+||||||||+|+++||+.++.+++.++...+.
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~~~ 114 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFV 114 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSTT
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHHHh
Confidence 4567899999988877665433 67899999999999999999999999999988865431
Q ss_pred --ChHHHHHHHHhc--cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCc
Q 037859 264 --DNSELRSLLIDT--SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGL 339 (504)
Q Consensus 264 --~~~~l~~l~~~~--~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~ 339 (504)
....+..+|... ..++++++||||.+....+.. ...........+..+++.++|.
T Consensus 115 ~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~---------------------~~~~~~~~~~~~~~ll~~lsgg 173 (278)
T 1iy2_A 115 GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSG---------------------VGGGNDEREQTLNQLLVEMDGF 173 (278)
T ss_dssp THHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC-----------------------------CHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccc---------------------cCCcchHHHHHHHHHHHHHhCC
Confidence 123456677665 358999999999864211100 0011223355778899999987
Q ss_pred cccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCcCCcchHHHHhcCccC-CCCCHHHHHH
Q 037859 340 WSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDIDSHELYAVIESMPAE-TNMTPADVAE 418 (504)
Q Consensus 340 ~~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~~~~~~~~~i~~l~~~-~~~s~a~i~~ 418 (504)
.. +..++++++||+++.|||+++|||||+.+|+++.|+.++|..|++.++..........+..++.. .|++++||..
T Consensus 174 ~~--~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~ 251 (278)
T 1iy2_A 174 EK--DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLEN 251 (278)
T ss_dssp CT--TCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHH
T ss_pred CC--CCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHH
Confidence 43 34478889999999999999999999999999999999999999988753221111112223333 3888888875
Q ss_pred hhC
Q 037859 419 NLM 421 (504)
Q Consensus 419 ~l~ 421 (504)
++.
T Consensus 252 l~~ 254 (278)
T 1iy2_A 252 LLN 254 (278)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 29
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.81 E-value=1.1e-19 Score=204.77 Aligned_cols=190 Identities=24% Similarity=0.322 Sum_probs=145.1
Q ss_pred CccccccccChhHHHHHHHhh-----------------cccccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccC----
Q 037859 205 PATFDTLAMETKKKEEIKKDL-----------------KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQ---- 263 (504)
Q Consensus 205 p~~f~~~~~~~~~k~~i~~~l-----------------~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~---- 263 (504)
+.+|+++++.+..++.|.+.+ ++++|||||||||||++|++||+.++.+++.+++..+.
T Consensus 200 ~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~~ 279 (806)
T 1ypw_A 200 EVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLA 279 (806)
T ss_dssp SCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSST
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhhh
Confidence 456899999888888877765 56799999999999999999999999999999887642
Q ss_pred --ChHHHHHHHHhc--cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCc
Q 037859 264 --DNSELRSLLIDT--SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGL 339 (504)
Q Consensus 264 --~~~~l~~l~~~~--~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~ 339 (504)
....++.+|... ..|+|+||||||.++...+ ..........+..|+..++|.
T Consensus 280 g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~------------------------~~~~~~~~~~~~~Ll~ll~g~ 335 (806)
T 1ypw_A 280 GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKRE------------------------KTHGEVERRIVSQLLTLMDGL 335 (806)
T ss_dssp THHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTS------------------------CCCSHHHHHHHHHHHHHHHSS
T ss_pred hhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccc------------------------cccchHHHHHHHHHHHHhhhh
Confidence 224566777665 3689999999999753211 112233456788999999998
Q ss_pred cccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCcCCcchHHHHhcCccC-CCCCHHHHHH
Q 037859 340 WSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDIDSHELYAVIESMPAE-TNMTPADVAE 418 (504)
Q Consensus 340 ~~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~~~~~~~~~i~~l~~~-~~~s~a~i~~ 418 (504)
.. ...+++|+|||+++.||+++.|+|||+..+.++.|+.++|..|++.+...........+..++.. .+++++++..
T Consensus 336 ~~--~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~ 413 (806)
T 1ypw_A 336 KQ--RAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAA 413 (806)
T ss_dssp CT--TSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHH
T ss_pred cc--cccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHH
Confidence 54 45689999999999999999999999999999999999999999988754321111112223333 4888988875
Q ss_pred hh
Q 037859 419 NL 420 (504)
Q Consensus 419 ~l 420 (504)
++
T Consensus 414 l~ 415 (806)
T 1ypw_A 414 LC 415 (806)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 30
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.79 E-value=1.5e-18 Score=176.17 Aligned_cols=155 Identities=15% Similarity=0.193 Sum_probs=128.9
Q ss_pred cCCCccccccccChhHHHHHHHhh---------cccccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccCChHHHHHHH
Q 037859 202 FEHPATFDTLAMETKKKEEIKKDL---------KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQDNSELRSLL 272 (504)
Q Consensus 202 ~~~p~~f~~~~~~~~~k~~i~~~l---------~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~~l~~l~ 272 (504)
-..|.+|+++++.+..++.+...+ ..++||+||||||||++|+++|+.++.+++.+++..+.....+...+
T Consensus 22 ~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (338)
T 3pfi_A 22 SLRPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEKSGDLAAIL 101 (338)
T ss_dssp -CCCCSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCCSHHHHHHHH
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhccchhHHHHHH
Confidence 346789999999999999888877 24799999999999999999999999999999999888888888999
Q ss_pred HhccCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccc-----------
Q 037859 273 IDTSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWS----------- 341 (504)
Q Consensus 273 ~~~~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~----------- 341 (504)
.....+++|||||||.+. ......|+..++...-
T Consensus 102 ~~~~~~~vl~lDEi~~l~-----------------------------------~~~~~~Ll~~l~~~~~~~~~~~~~~~~ 146 (338)
T 3pfi_A 102 TNLSEGDILFIDEIHRLS-----------------------------------PAIEEVLYPAMEDYRLDIIIGSGPAAQ 146 (338)
T ss_dssp HTCCTTCEEEEETGGGCC-----------------------------------HHHHHHHHHHHHTSCC---------CC
T ss_pred HhccCCCEEEEechhhcC-----------------------------------HHHHHHHHHHHHhccchhhcccCcccc
Confidence 888899999999999862 2244555665553210
Q ss_pred ---cCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCc
Q 037859 342 ---ASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDI 393 (504)
Q Consensus 342 ---~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~ 393 (504)
.....+++|+|||+...++++|++ ||+.++.|+.|+.+++..+++.++..
T Consensus 147 ~~~~~~~~~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~ 199 (338)
T 3pfi_A 147 TIKIDLPKFTLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALK 199 (338)
T ss_dssp CCCCCCCCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred ceecCCCCeEEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHh
Confidence 001137899999999999999999 99999999999999999999988753
No 31
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.79 E-value=4e-21 Score=203.71 Aligned_cols=202 Identities=12% Similarity=0.052 Sum_probs=118.0
Q ss_pred ccccccccChhHHHHHHHhh---------cccccccCCCCCcHHHHHHHHHHhcC--CcEEEEeccccC-----ChHHHH
Q 037859 206 ATFDTLAMETKKKEEIKKDL---------KKGYLLYGPPGTGKSTMIAAMANFLN--YDVYDLELTTVQ-----DNSELR 269 (504)
Q Consensus 206 ~~f~~~~~~~~~k~~i~~~l---------~rg~LL~GPpGtGKTsla~aiA~~l~--~~i~~l~~~~~~-----~~~~l~ 269 (504)
..|+.+++.++.|+.+...+ ++|+|||||||||||++|+++|++++ .+++.++++.+. ....++
T Consensus 34 ~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (456)
T 2c9o_A 34 QAASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVLM 113 (456)
T ss_dssp SEETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCSSSCHHHHHH
T ss_pred hchhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHHhhhhhHHHH
Confidence 45899999999988655444 57899999999999999999999999 899999988753 234578
Q ss_pred HHHHhc-----cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccCC
Q 037859 270 SLLIDT-----SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASG 344 (504)
Q Consensus 270 ~l~~~~-----~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~ 344 (504)
..|..+ ..||||||||||+++...+....... ........- .-............+.++..++......+
T Consensus 114 ~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~----~~~~~~~~~-~l~~~~~~~~~~~~~~ll~~l~~~~~~~~ 188 (456)
T 2c9o_A 114 ENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGY----GKTISHVII-GLKTAKGTKQLKLDPSIFESLQKERVEAG 188 (456)
T ss_dssp HHHHHTEEEEEEEEEEEEEEEEEEEEEC------------------CEEE-EEEETTEEEEEEECHHHHHHHHHTTCCTT
T ss_pred HHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCc----chHHHHHHH-HHhccccchhHhhhHHHHHHHhhccCCCC
Confidence 888776 47899999999998632211100000 000000000 00000000111223345555542111233
Q ss_pred CceEEEEecCCCCCCChhhhcCCCcee--EEEecCCC--HHHHHHHHHHhcCcCCcchHHHHhcCccCC-CCCHHHHHHh
Q 037859 345 EERIIVFTTNYVDKLDPALIRRGRMDK--HIEMSYCC--FEAFKVLAKNYLDIDSHELYAVIESMPAET-NMTPADVAEN 419 (504)
Q Consensus 345 ~~~ivI~tTN~~e~Ld~ALlRpGR~d~--~I~~~~p~--~e~~~~i~~~~l~~~~~~~~~~i~~l~~~~-~~s~a~i~~~ 419 (504)
..++|++|||+++.+|+|+.||||||. .+.++.|+ .++|+.|++.+.. .+++.++..+ | ++||..+
T Consensus 189 ~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~-------~dl~~~a~~t~g--gadl~~l 259 (456)
T 2c9o_A 189 DVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL-------HDLDVANARPQG--GQDILSM 259 (456)
T ss_dssp EEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEH-------HHHHHTC--------------
T ss_pred CEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHH-------HHHHHHHHhCCC--hhHHHHH
Confidence 445556899999999999999999998 56667774 4666666554431 2345555544 5 8888876
Q ss_pred hC
Q 037859 420 LM 421 (504)
Q Consensus 420 l~ 421 (504)
+.
T Consensus 260 ~~ 261 (456)
T 2c9o_A 260 MG 261 (456)
T ss_dssp --
T ss_pred Hh
Confidence 63
No 32
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.74 E-value=1.1e-17 Score=168.38 Aligned_cols=180 Identities=16% Similarity=0.191 Sum_probs=134.6
Q ss_pred CCCccccccccChhHHHHHHHhh---------cccccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccCChHHHHHHHH
Q 037859 203 EHPATFDTLAMETKKKEEIKKDL---------KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQDNSELRSLLI 273 (504)
Q Consensus 203 ~~p~~f~~~~~~~~~k~~i~~~l---------~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~~l~~l~~ 273 (504)
.+|.+|+++++.+..++.+...+ ++++||+||||||||++|+++|+.++.+++.+++..+....++...+.
T Consensus 6 ~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~ 85 (324)
T 1hqc_A 6 LRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAILA 85 (324)
T ss_dssp CCCCSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCSHHHHHHHHT
T ss_pred cCcccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCChHHHHHHHH
Confidence 35778999999998888877766 267999999999999999999999999999999998887788888887
Q ss_pred h-ccCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCcc-----cc-----
Q 037859 274 D-TSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLW-----SA----- 342 (504)
Q Consensus 274 ~-~~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~-----~~----- 342 (504)
. ...+++|||||||.+. ......|+..++... +.
T Consensus 86 ~~~~~~~~l~lDEi~~l~-----------------------------------~~~~~~L~~~l~~~~~~~v~~~~~~~~ 130 (324)
T 1hqc_A 86 NSLEEGDILFIDEIHRLS-----------------------------------RQAEEHLYPAMEDFVMDIVIGQGPAAR 130 (324)
T ss_dssp TTCCTTCEEEETTTTSCC-----------------------------------HHHHHHHHHHHHHSEEEECCSSSSSCC
T ss_pred HhccCCCEEEEECCcccc-----------------------------------cchHHHHHHHHHhhhhHHhcccccccc
Confidence 7 6788999999999862 112344444444221 00
Q ss_pred ----CCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCcCCcchH-HHHhcCccCCCCCHHHHH
Q 037859 343 ----SGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDIDSHELY-AVIESMPAETNMTPADVA 417 (504)
Q Consensus 343 ----~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~~~~~~~-~~i~~l~~~~~~s~a~i~ 417 (504)
....+++|+|||..+.++++|.+ ||+.++.++.|+.+++..+++.++........ +.++.++...+-.+.++.
T Consensus 131 ~~~~~~~~~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~ 208 (324)
T 1hqc_A 131 TIRLELPRFTLIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAK 208 (324)
T ss_dssp CEEEECCCCEEEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSCHHHHH
T ss_pred ccccCCCCEEEEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHH
Confidence 01246899999999999999999 99889999999999999999988743322221 223333333344566655
Q ss_pred Hh
Q 037859 418 EN 419 (504)
Q Consensus 418 ~~ 419 (504)
+.
T Consensus 209 ~~ 210 (324)
T 1hqc_A 209 RL 210 (324)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 33
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.71 E-value=2.1e-18 Score=180.43 Aligned_cols=145 Identities=18% Similarity=0.190 Sum_probs=58.9
Q ss_pred ccccChhHHHHHHHhh------------------cccccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccC--------
Q 037859 210 TLAMETKKKEEIKKDL------------------KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQ-------- 263 (504)
Q Consensus 210 ~~~~~~~~k~~i~~~l------------------~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~-------- 263 (504)
.++++++.|+.+...+ ++++||+||||||||++|+++|+.++.+++.++++.+.
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d 95 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 95 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCC
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeecc
Confidence 4677777777775544 47899999999999999999999999999999986542
Q ss_pred ChHHHHHHHHhccCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccC
Q 037859 264 DNSELRSLLIDTSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSAS 343 (504)
Q Consensus 264 ~~~~l~~l~~~~~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~ 343 (504)
....++.+|..+.. ++++||+|.+.+ .........+++.||+.|||+.+..
T Consensus 96 ~e~~lr~lf~~a~~--~~~~De~d~~~~---------------------------~~~~~~e~rvl~~LL~~~dg~~~~~ 146 (444)
T 1g41_A 96 VDSIIRDLTDSAMK--LVRQQEIAKNRA---------------------------RAEDVAEERILDALLPPAKNQWGEV 146 (444)
T ss_dssp THHHHHHHHHHHHH--HHHHHHHHSCC-----------------------------------------------------
T ss_pred HHHHHHHHHHHHHh--cchhhhhhhhhc---------------------------cchhhHHHHHHHHHHHHhhcccccc
Confidence 23456666655422 345788877421 1112234678999999999996532
Q ss_pred CCceEEEEe-cCCCCCCChhhhcCCCceeEEEecCCCHH-HHHHHH
Q 037859 344 GEERIIVFT-TNYVDKLDPALIRRGRMDKHIEMSYCCFE-AFKVLA 387 (504)
Q Consensus 344 ~~~~ivI~t-TN~~e~Ld~ALlRpGR~d~~I~~~~p~~e-~~~~i~ 387 (504)
.+ +++ ||+++.|||||+||||||++|+++.|+.. .+..|+
T Consensus 147 ---~v-~a~~TN~~~~ld~aL~rggr~D~~i~i~lP~~~~~~~ei~ 188 (444)
T 1g41_A 147 ---EN-HDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSMGVEIM 188 (444)
T ss_dssp ----------------------------------------------
T ss_pred ---cc-ccccccCHHHHHHHHHcCCCcceEEEEcCCCCccchhhhh
Confidence 23 454 99999999999999999999999999887 455543
No 34
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.70 E-value=5.2e-17 Score=163.89 Aligned_cols=148 Identities=23% Similarity=0.227 Sum_probs=116.9
Q ss_pred cCCCccccccccChhHHHHHHHhh-----cccccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccCChHHHHHHHHhc-
Q 037859 202 FEHPATFDTLAMETKKKEEIKKDL-----KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQDNSELRSLLIDT- 275 (504)
Q Consensus 202 ~~~p~~f~~~~~~~~~k~~i~~~l-----~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~~l~~l~~~~- 275 (504)
-..|.+|++++++++.++.+...+ +..||++||||||||++++++|+.++.+++.++++... ...++..+...
T Consensus 19 k~rP~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~-~~~i~~~~~~~~ 97 (324)
T 3u61_B 19 KYRPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK-IDFVRGPLTNFA 97 (324)
T ss_dssp HSCCCSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC-HHHHHTHHHHHH
T ss_pred hhCCCCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC-HHHHHHHHHHHH
Confidence 346889999999999999888887 45689999999999999999999999999999987754 45555544331
Q ss_pred ---c---CCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccCCCceEE
Q 037859 276 ---S---SKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERII 349 (504)
Q Consensus 276 ---~---~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~~~~iv 349 (504)
+ .+.||||||+|.+. .......|+..++... ..+.+
T Consensus 98 ~~~~~~~~~~vliiDEi~~l~----------------------------------~~~~~~~L~~~le~~~----~~~~i 139 (324)
T 3u61_B 98 SAASFDGRQKVIVIDEFDRSG----------------------------------LAESQRHLRSFMEAYS----SNCSI 139 (324)
T ss_dssp HBCCCSSCEEEEEEESCCCGG----------------------------------GHHHHHHHHHHHHHHG----GGCEE
T ss_pred hhcccCCCCeEEEEECCcccC----------------------------------cHHHHHHHHHHHHhCC----CCcEE
Confidence 2 67999999999862 0124456666666432 34688
Q ss_pred EEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhc
Q 037859 350 VFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYL 391 (504)
Q Consensus 350 I~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l 391 (504)
|+|||.+..++++|.+ |+. .+.|+.|+.+++..|++.++
T Consensus 140 I~~~n~~~~l~~~l~s--R~~-~i~~~~~~~~e~~~il~~~~ 178 (324)
T 3u61_B 140 IITANNIDGIIKPLQS--RCR-VITFGQPTDEDKIEMMKQMI 178 (324)
T ss_dssp EEEESSGGGSCTTHHH--HSE-EEECCCCCHHHHHHHHHHHH
T ss_pred EEEeCCccccCHHHHh--hCc-EEEeCCCCHHHHHHHHHHHH
Confidence 9999999999999999 994 79999999998777665543
No 35
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.69 E-value=2e-16 Score=148.74 Aligned_cols=148 Identities=18% Similarity=0.246 Sum_probs=114.8
Q ss_pred CCCccccccccChhHHHHHHHhh----cccccccCCCCCcHHHHHHHHHHhc-----CCcEEEEeccccCChHHHHHHHH
Q 037859 203 EHPATFDTLAMETKKKEEIKKDL----KKGYLLYGPPGTGKSTMIAAMANFL-----NYDVYDLELTTVQDNSELRSLLI 273 (504)
Q Consensus 203 ~~p~~f~~~~~~~~~k~~i~~~l----~rg~LL~GPpGtGKTsla~aiA~~l-----~~~i~~l~~~~~~~~~~l~~l~~ 273 (504)
..|..|+.+++.+..++.+...+ ..++||+||||||||++++++++.+ ...++.+++........+...+.
T Consensus 11 ~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (226)
T 2chg_A 11 YRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIK 90 (226)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHH
T ss_pred cCCCCHHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHH
Confidence 46788999999999999988888 2349999999999999999999876 45678888776655555544433
Q ss_pred h--------ccCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccCCC
Q 037859 274 D--------TSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGE 345 (504)
Q Consensus 274 ~--------~~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~~ 345 (504)
. ...+.||+|||+|.+. ......|+..++.. ..
T Consensus 91 ~~~~~~~~~~~~~~vliiDe~~~l~-----------------------------------~~~~~~l~~~l~~~----~~ 131 (226)
T 2chg_A 91 EFARTAPIGGAPFKIIFLDEADALT-----------------------------------ADAQAALRRTMEMY----SK 131 (226)
T ss_dssp HHHTSCCSTTCSCEEEEEETGGGSC-----------------------------------HHHHHHHHHHHHHT----TT
T ss_pred HHhcccCCCccCceEEEEeChhhcC-----------------------------------HHHHHHHHHHHHhc----CC
Confidence 2 1468999999999862 11344555555542 24
Q ss_pred ceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcC
Q 037859 346 ERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLD 392 (504)
Q Consensus 346 ~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~ 392 (504)
..++|+|||.++.+++++.+ |+. .+.++.++.++...++..++.
T Consensus 132 ~~~~i~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~ 175 (226)
T 2chg_A 132 SCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICE 175 (226)
T ss_dssp TEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHH
T ss_pred CCeEEEEeCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHH
Confidence 57889999999999999999 997 899999999999999887763
No 36
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.69 E-value=6.4e-17 Score=161.77 Aligned_cols=151 Identities=18% Similarity=0.251 Sum_probs=114.5
Q ss_pred ccccChhHHHHHHHhh-------------------cccccccCCCCCcHHHHHHHHHHhcC-------CcEEEEeccccC
Q 037859 210 TLAMETKKKEEIKKDL-------------------KKGYLLYGPPGTGKSTMIAAMANFLN-------YDVYDLELTTVQ 263 (504)
Q Consensus 210 ~~~~~~~~k~~i~~~l-------------------~rg~LL~GPpGtGKTsla~aiA~~l~-------~~i~~l~~~~~~ 263 (504)
.+++.+..|+.|.+.+ +.++|||||||||||++|+++|+.++ .+++.+++..+.
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~ 111 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV 111 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh
Confidence 5778888888777554 22599999999999999999999883 388888887653
Q ss_pred C------hHHHHHHHHhccCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhc
Q 037859 264 D------NSELRSLLIDTSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFID 337 (504)
Q Consensus 264 ~------~~~l~~l~~~~~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lD 337 (504)
. ...+..+|... .++||||||+|.++. .+ .+.......++.|++.++
T Consensus 112 ~~~~g~~~~~~~~~~~~~-~~~vl~iDEid~l~~---~~-----------------------~~~~~~~~~~~~Ll~~l~ 164 (309)
T 3syl_A 112 GQYIGHTAPKTKEVLKRA-MGGVLFIDEAYYLYR---PD-----------------------NERDYGQEAIEILLQVME 164 (309)
T ss_dssp CSSTTCHHHHHHHHHHHH-TTSEEEEETGGGSCC---CC--------------------------CCTHHHHHHHHHHHH
T ss_pred hhcccccHHHHHHHHHhc-CCCEEEEEChhhhcc---CC-----------------------CcccccHHHHHHHHHHHh
Confidence 2 24456666554 678999999999752 11 011224557788888888
Q ss_pred CccccCCCceEEEEecCCCC-----CCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCc
Q 037859 338 GLWSASGEERIIVFTTNYVD-----KLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDI 393 (504)
Q Consensus 338 g~~~~~~~~~ivI~tTN~~e-----~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~ 393 (504)
.. ...+++|+|||..+ .++|+|.+ ||+.+|+|+.|+.+++..|++.++..
T Consensus 165 ~~----~~~~~~i~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~ 219 (309)
T 3syl_A 165 NN----RDDLVVILAGYADRMENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDD 219 (309)
T ss_dssp HC----TTTCEEEEEECHHHHHHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHH
T ss_pred cC----CCCEEEEEeCChHHHHHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHH
Confidence 53 34578899998654 35899999 99999999999999999999998854
No 37
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.68 E-value=2e-16 Score=157.66 Aligned_cols=157 Identities=19% Similarity=0.286 Sum_probs=113.6
Q ss_pred ccccChhHHHHHHHhh------------------cccccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccCC-------
Q 037859 210 TLAMETKKKEEIKKDL------------------KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQD------- 264 (504)
Q Consensus 210 ~~~~~~~~k~~i~~~l------------------~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~------- 264 (504)
.+++.+..++.+...+ ++++||+||||||||++|+++|+.++.+++.++++.+..
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~ 95 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 95 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGS
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCcc
Confidence 3667777777666544 457999999999999999999999999999999876532
Q ss_pred -hHHHHHHHHhc-------cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhh
Q 037859 265 -NSELRSLLIDT-------SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFI 336 (504)
Q Consensus 265 -~~~l~~l~~~~-------~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~l 336 (504)
...++.++... ..++||||||||.+..... ..+.........+.||..+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~-----------------------~~~~~~~~~~~~~~Ll~~l 152 (310)
T 1ofh_A 96 VDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGE-----------------------YSGADVSREGVQRDLLPLV 152 (310)
T ss_dssp TTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSS-----------------------CCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCcccc-----------------------ccccchhHHHHHHHHHHHh
Confidence 23466666543 2479999999999742100 0011122233467788888
Q ss_pred cCcccc------CCCceEEEEe----cCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhc
Q 037859 337 DGLWSA------SGEERIIVFT----TNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYL 391 (504)
Q Consensus 337 Dg~~~~------~~~~~ivI~t----TN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l 391 (504)
++.... ....+++|+| ++.+..++|+|++ ||+.+|+|+.|+.+++..|++..+
T Consensus 153 e~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~~ 215 (310)
T 1ofh_A 153 EGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPH 215 (310)
T ss_dssp HCCEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSST
T ss_pred cCCeEecccccccCCcEEEEEcCCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhhH
Confidence 864210 1235778888 5677889999999 999999999999999999998543
No 38
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.66 E-value=8.5e-17 Score=147.77 Aligned_cols=148 Identities=20% Similarity=0.269 Sum_probs=104.8
Q ss_pred CCccccccccChhHHHHHHHhh----cccccccCCCCCcHHHHHHHHHHhc----------CCcEEEEeccccC----C-
Q 037859 204 HPATFDTLAMETKKKEEIKKDL----KKGYLLYGPPGTGKSTMIAAMANFL----------NYDVYDLELTTVQ----D- 264 (504)
Q Consensus 204 ~p~~f~~~~~~~~~k~~i~~~l----~rg~LL~GPpGtGKTsla~aiA~~l----------~~~i~~l~~~~~~----~- 264 (504)
.|..|+.+++.++..+.+.+.+ ++++||+||||||||++++++|+.+ +.+++.+++.... .
T Consensus 17 ~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (195)
T 1jbk_A 17 EQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYR 96 (195)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSH
T ss_pred hhccccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCcc
Confidence 3667888999998889988887 4669999999999999999999986 7888888876542 1
Q ss_pred ---hHHHHHHHH---hccCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcC
Q 037859 265 ---NSELRSLLI---DTSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDG 338 (504)
Q Consensus 265 ---~~~l~~l~~---~~~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg 338 (504)
...+..++. ....++||+|||+|.+....+. .........+..++ +
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~------------------------~~~~~~~~~l~~~~---~- 148 (195)
T 1jbk_A 97 GEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKA------------------------DGAMDAGNMLKPAL---A- 148 (195)
T ss_dssp HHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------------------------------CCCCHHHHHHHH---H-
T ss_pred ccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcc------------------------cchHHHHHHHHHhh---c-
Confidence 123444444 3356889999999997421100 00111112222222 2
Q ss_pred ccccCCCceEEEEecCCCC-----CCChhhhcCCCceeEEEecCCCHHHHHHHH
Q 037859 339 LWSASGEERIIVFTTNYVD-----KLDPALIRRGRMDKHIEMSYCCFEAFKVLA 387 (504)
Q Consensus 339 ~~~~~~~~~ivI~tTN~~e-----~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~ 387 (504)
...+.+|+|||.++ .+|++|.+ ||+ .|+++.|+.+++.+|+
T Consensus 149 -----~~~~~~i~~~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 149 -----RGELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp -----TTSCCEEEEECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred -----cCCeEEEEeCCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 13467888888776 78999999 997 7999999999988764
No 39
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.66 E-value=2.7e-16 Score=159.15 Aligned_cols=152 Identities=16% Similarity=0.186 Sum_probs=110.4
Q ss_pred CccccccccChhHHHHHHHhh--cccccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccCChHHHHHHHH---------
Q 037859 205 PATFDTLAMETKKKEEIKKDL--KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQDNSELRSLLI--------- 273 (504)
Q Consensus 205 p~~f~~~~~~~~~k~~i~~~l--~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~~l~~l~~--------- 273 (504)
|..++.+.++++.++.+...+ ++++|||||||||||++|+++|+.++.+++.+++.......++.....
T Consensus 23 ~~~~~~i~g~~~~~~~l~~~l~~~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g~~~~~~~~~~~~ 102 (331)
T 2r44_A 23 DEVGKVVVGQKYMINRLLIGICTGGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIGTMIYNQHKGNFE 102 (331)
T ss_dssp HHHTTTCCSCHHHHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHEEEEEETTTTEEE
T ss_pred HHhccceeCcHHHHHHHHHHHHcCCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCCceeecCCCCceE
Confidence 344667788888888887777 678999999999999999999999999999998754333333221100
Q ss_pred hccC---CeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcC-------ccccC
Q 037859 274 DTSS---KSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDG-------LWSAS 343 (504)
Q Consensus 274 ~~~~---~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg-------~~~~~ 343 (504)
-... .+|+||||||.+- ....+.|+..|+. .....
T Consensus 103 ~~~g~l~~~vl~iDEi~~~~-----------------------------------~~~~~~Ll~~l~~~~~~~~g~~~~~ 147 (331)
T 2r44_A 103 VKKGPVFSNFILADEVNRSP-----------------------------------AKVQSALLECMQEKQVTIGDTTYPL 147 (331)
T ss_dssp EEECTTCSSEEEEETGGGSC-----------------------------------HHHHHHHHHHHHHSEEEETTEEEEC
T ss_pred eccCcccccEEEEEccccCC-----------------------------------HHHHHHHHHHHhcCceeeCCEEEEC
Confidence 0112 3799999999851 2244555555542 11112
Q ss_pred CCceEEEEecCCCC-----CCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCc
Q 037859 344 GEERIIVFTTNYVD-----KLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDI 393 (504)
Q Consensus 344 ~~~~ivI~tTN~~e-----~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~ 393 (504)
....++|+|+|..+ .++++|++ ||+.++.+++|+.+++..|++.++..
T Consensus 148 ~~~~~viat~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 148 DNPFLVLATQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp CSSCEEEEEECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCT
T ss_pred CCCEEEEEecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhcccc
Confidence 34467888888654 38999999 99999999999999999999988754
No 40
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.66 E-value=1.1e-15 Score=145.42 Aligned_cols=148 Identities=18% Similarity=0.309 Sum_probs=113.8
Q ss_pred CCCccccccccChhHHHHHHHhh-----cccccccCCCCCcHHHHHHHHHHhcCC------------------------c
Q 037859 203 EHPATFDTLAMETKKKEEIKKDL-----KKGYLLYGPPGTGKSTMIAAMANFLNY------------------------D 253 (504)
Q Consensus 203 ~~p~~f~~~~~~~~~k~~i~~~l-----~rg~LL~GPpGtGKTsla~aiA~~l~~------------------------~ 253 (504)
..|..|+.+++.+..++.+...+ ++.++|+||||||||++++++++.++. +
T Consensus 17 ~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (250)
T 1njg_A 17 WRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVD 96 (250)
T ss_dssp TCCCSGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSS
T ss_pred cCCccHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcc
Confidence 45778999999999998888887 236899999999999999999988743 3
Q ss_pred EEEEeccccCChHHHHHHHHhcc------CCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhh
Q 037859 254 VYDLELTTVQDNSELRSLLIDTS------SKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKV 327 (504)
Q Consensus 254 i~~l~~~~~~~~~~l~~l~~~~~------~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (504)
++.++.........++.++.... .+.+|+|||+|.+. ..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~-----------------------------------~~ 141 (250)
T 1njg_A 97 LIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS-----------------------------------RH 141 (250)
T ss_dssp EEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSC-----------------------------------HH
T ss_pred eEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECccccc-----------------------------------HH
Confidence 34444433233455666666542 57899999999851 12
Q ss_pred HHHHHhhhhcCccccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcC
Q 037859 328 TLSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLD 392 (504)
Q Consensus 328 ~ls~lL~~lDg~~~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~ 392 (504)
.+..|+..++.. ....++|++||.++.+++++.+ |+ ..|+++.++.++...+++.++.
T Consensus 142 ~~~~l~~~l~~~----~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~ 199 (250)
T 1njg_A 142 SFNALLKTLEEP----PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILN 199 (250)
T ss_dssp HHHHHHHHHHSC----CTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC----CCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHH
Confidence 456677777643 3457899999999999999999 86 6899999999999999988774
No 41
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.65 E-value=1.9e-16 Score=162.65 Aligned_cols=158 Identities=20% Similarity=0.295 Sum_probs=110.0
Q ss_pred cccChhHHHHHHHhh-------------------cccccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccCC-------
Q 037859 211 LAMETKKKEEIKKDL-------------------KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQD------- 264 (504)
Q Consensus 211 ~~~~~~~k~~i~~~l-------------------~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~------- 264 (504)
+++++..++.+...+ ++++||+||||||||++|+++|+.++.+++.++++.+..
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~ 96 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGED 96 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhccccccccc
Confidence 567777777776655 367999999999999999999999999999999987642
Q ss_pred -hHHHHHHHHhc------cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhc
Q 037859 265 -NSELRSLLIDT------SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFID 337 (504)
Q Consensus 265 -~~~l~~l~~~~------~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lD 337 (504)
...+..++... ..++||||||||.+.. .+.. ...+........++.||..||
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~---~~~~------------------~~~~~~~~~~~~~~~Ll~~le 155 (363)
T 3hws_A 97 VENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISR---KSDN------------------PSITRDVSGEGVQQALLKLIE 155 (363)
T ss_dssp HTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCC---CSSC------------------C---CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcc---cccc------------------cccccccchHHHHHHHHHHhc
Confidence 23345555544 3578999999998742 1100 001112223347899999999
Q ss_pred Ccccc-----------------CCCceEEEEecCCC----------CC--------------------------------
Q 037859 338 GLWSA-----------------SGEERIIVFTTNYV----------DK-------------------------------- 358 (504)
Q Consensus 338 g~~~~-----------------~~~~~ivI~tTN~~----------e~-------------------------------- 358 (504)
|.... ...++++|+|+|.. ..
T Consensus 156 g~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~ 235 (363)
T 3hws_A 156 GTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLI 235 (363)
T ss_dssp CC----------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHH
T ss_pred CceeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHH
Confidence 64210 11224455555432 11
Q ss_pred ---CChhhhcCCCceeEEEecCCCHHHHHHHHHHhc
Q 037859 359 ---LDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYL 391 (504)
Q Consensus 359 ---Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l 391 (504)
++|+|+. |||..+.|..|+.+.+..|+...+
T Consensus 236 ~~~~~~~l~~--R~~~~~~~~pl~~~~~~~I~~~~~ 269 (363)
T 3hws_A 236 KFGLIPEFIG--RLPVVATLNELSEEALIQILKEPK 269 (363)
T ss_dssp HHTCCHHHHT--TCCEEEECCCCCHHHHHHHHHSST
T ss_pred HcCCCHHHhc--ccCeeeecCCCCHHHHHHHHHHHH
Confidence 7899998 999999999999999999998743
No 42
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.65 E-value=1.2e-15 Score=164.85 Aligned_cols=150 Identities=21% Similarity=0.226 Sum_probs=109.1
Q ss_pred ccccccChhHHHHHHHhh----------cccccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccCChH-----------
Q 037859 208 FDTLAMETKKKEEIKKDL----------KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQDNS----------- 266 (504)
Q Consensus 208 f~~~~~~~~~k~~i~~~l----------~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~----------- 266 (504)
.+.+.+..+.++.+.+.+ +..+||+||||||||+++++||+.++.++..+++..+....
T Consensus 80 ~~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig 159 (543)
T 3m6a_A 80 DEEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVG 159 (543)
T ss_dssp HHHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC----------------
T ss_pred HHHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhc
Confidence 445778888888776654 34599999999999999999999999999999887753322
Q ss_pred ----HHHHHHHhcc-CCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccc
Q 037859 267 ----ELRSLLIDTS-SKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWS 341 (504)
Q Consensus 267 ----~l~~l~~~~~-~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~ 341 (504)
.+...|..+. .+.|+||||||.+.. .+ .....+.||..||....
T Consensus 160 ~~~~~~~~~~~~a~~~~~vl~lDEid~l~~---~~----------------------------~~~~~~~LL~~ld~~~~ 208 (543)
T 3m6a_A 160 AMPGRIIQGMKKAGKLNPVFLLDEIDKMSS---DF----------------------------RGDPSSAMLEVLDPEQN 208 (543)
T ss_dssp ----CHHHHHHTTCSSSEEEEEEESSSCC----------------------------------------CCGGGTCTTTT
T ss_pred cCchHHHHHHHHhhccCCEEEEhhhhhhhh---hh----------------------------ccCHHHHHHHHHhhhhc
Confidence 1233444442 456999999999731 10 11245678888875431
Q ss_pred c-----------CCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhc
Q 037859 342 A-----------SGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYL 391 (504)
Q Consensus 342 ~-----------~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l 391 (504)
. .-..++||+|||.++.|||+|++ ||+ .|.|+.|+.+++..|++.|+
T Consensus 209 ~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 209 SSFSDHYIEETFDLSKVLFIATANNLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp TBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTH
T ss_pred ceeecccCCeeecccceEEEeccCccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHH
Confidence 1 01457999999999999999999 996 69999999999999999987
No 43
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.65 E-value=6.2e-16 Score=158.40 Aligned_cols=148 Identities=16% Similarity=0.163 Sum_probs=104.1
Q ss_pred CCcc-ccccccChhHHHHH---HHhh------cccccccCCCCCcHHHHHHHHHHhcCC--cEEEEeccccC--------
Q 037859 204 HPAT-FDTLAMETKKKEEI---KKDL------KKGYLLYGPPGTGKSTMIAAMANFLNY--DVYDLELTTVQ-------- 263 (504)
Q Consensus 204 ~p~~-f~~~~~~~~~k~~i---~~~l------~rg~LL~GPpGtGKTsla~aiA~~l~~--~i~~l~~~~~~-------- 263 (504)
+|.. |+.+++.+..++.+ ...+ ++++|||||||||||++|+++|+.++. +++.+++..+.
T Consensus 38 ~p~~~~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 117 (368)
T 3uk6_A 38 EPRQASQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTE 117 (368)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSSSCHHH
T ss_pred CcCcchhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhcccchhH
Confidence 4555 99999999887764 3333 357999999999999999999999975 66666643310
Q ss_pred ------------------------------------------C-----hHHHHHHHHhcc-----------CCeEEEEec
Q 037859 264 ------------------------------------------D-----NSELRSLLIDTS-----------SKSILVIED 285 (504)
Q Consensus 264 ------------------------------------------~-----~~~l~~l~~~~~-----------~~~Il~iDe 285 (504)
. ...++..+.... .|+||||||
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDE 197 (368)
T 3uk6_A 118 ALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDE 197 (368)
T ss_dssp HHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEES
T ss_pred HHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhh
Confidence 1 233444443321 268999999
Q ss_pred ccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccCCCceEEEEec-----------C
Q 037859 286 IDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERIIVFTT-----------N 354 (504)
Q Consensus 286 iD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~~~~ivI~tT-----------N 354 (504)
||.+. ...++.|+..++.. ...+++++|. |
T Consensus 198 i~~l~-----------------------------------~~~~~~L~~~le~~----~~~~~ii~t~~~~~~i~~t~~~ 238 (368)
T 3uk6_A 198 VHMLD-----------------------------------IESFSFLNRALESD----MAPVLIMATNRGITRIRGTSYQ 238 (368)
T ss_dssp GGGSB-----------------------------------HHHHHHHHHHTTCT----TCCEEEEEESCSEEECBTSSCE
T ss_pred ccccC-----------------------------------hHHHHHHHHHhhCc----CCCeeeeecccceeeeeccCCC
Confidence 99862 23556677766543 1224433333 3
Q ss_pred CCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCc
Q 037859 355 YVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDI 393 (504)
Q Consensus 355 ~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~ 393 (504)
.+..++++|++ ||.. |.|+.|+.+++..+++.++..
T Consensus 239 ~~~~l~~~l~s--R~~~-i~~~~~~~~e~~~il~~~~~~ 274 (368)
T 3uk6_A 239 SPHGIPIDLLD--RLLI-VSTTPYSEKDTKQILRIRCEE 274 (368)
T ss_dssp EETTCCHHHHT--TEEE-EEECCCCHHHHHHHHHHHHHH
T ss_pred CcccCCHHHHh--hccE-EEecCCCHHHHHHHHHHHHHH
Confidence 57889999999 9965 899999999999999987653
No 44
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.63 E-value=1.2e-15 Score=152.44 Aligned_cols=148 Identities=18% Similarity=0.244 Sum_probs=114.1
Q ss_pred CCCccccccccChhHHHHHHHhh----cccccccCCCCCcHHHHHHHHHHhc-----CCcEEEEeccccCChHHHHH---
Q 037859 203 EHPATFDTLAMETKKKEEIKKDL----KKGYLLYGPPGTGKSTMIAAMANFL-----NYDVYDLELTTVQDNSELRS--- 270 (504)
Q Consensus 203 ~~p~~f~~~~~~~~~k~~i~~~l----~rg~LL~GPpGtGKTsla~aiA~~l-----~~~i~~l~~~~~~~~~~l~~--- 270 (504)
..|.+|+++++.+..++.+...+ ...||||||||||||++|+++|+.+ +.+++.++++...+...++.
T Consensus 11 ~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (319)
T 2chq_A 11 YRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIK 90 (319)
T ss_dssp TSCSSGGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTTSSHHHH
T ss_pred cCCCCHHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChHHHHHHHH
Confidence 46888999999999999999888 2249999999999999999999987 34577888776433222222
Q ss_pred HHH-hc----cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccCCC
Q 037859 271 LLI-DT----SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGE 345 (504)
Q Consensus 271 l~~-~~----~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~~ 345 (504)
.+. .. ..+.||+|||+|.+. ......|+..++.. ..
T Consensus 91 ~~~~~~~~~~~~~~vliiDe~~~l~-----------------------------------~~~~~~L~~~le~~----~~ 131 (319)
T 2chq_A 91 EFARTAPIGGAPFKIIFLDEADALT-----------------------------------ADAQAALRRTMEMY----SK 131 (319)
T ss_dssp HHHHSCCSSSCCCEEEEEETGGGSC-----------------------------------HHHHHTTGGGTSSS----SS
T ss_pred HHHhcCCCCCCCceEEEEeCCCcCC-----------------------------------HHHHHHHHHHHHhc----CC
Confidence 222 11 357999999999862 12456677777653 34
Q ss_pred ceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcC
Q 037859 346 ERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLD 392 (504)
Q Consensus 346 ~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~ 392 (504)
..++|++||.++.+++++.+ |+. .+.|+.|+.+++..++..++.
T Consensus 132 ~~~~i~~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~ 175 (319)
T 2chq_A 132 SCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICE 175 (319)
T ss_dssp SEEEEEEESCGGGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHH
T ss_pred CCeEEEEeCChhhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHH
Confidence 57889999999999999999 885 899999999999999887764
No 45
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.63 E-value=1.1e-15 Score=161.14 Aligned_cols=145 Identities=20% Similarity=0.320 Sum_probs=110.9
Q ss_pred CCCccccccccChhHH---HHHHHhh----cccccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccCChHHHHHHHHhc
Q 037859 203 EHPATFDTLAMETKKK---EEIKKDL----KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQDNSELRSLLIDT 275 (504)
Q Consensus 203 ~~p~~f~~~~~~~~~k---~~i~~~l----~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~~l~~l~~~~ 275 (504)
..|.+|+.+++++..+ +.+...+ ..++|||||||||||++|++||+.++.+++.+++... +...++.++..+
T Consensus 20 ~rP~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~-~~~~ir~~~~~a 98 (447)
T 3pvs_A 20 MRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTS-GVKEIREAIERA 98 (447)
T ss_dssp TCCCSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTC-CHHHHHHHHHHH
T ss_pred hCCCCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccC-CHHHHHHHHHHH
Confidence 4688999999999877 5555555 3469999999999999999999999999999987654 345566666553
Q ss_pred ------cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccCCCceEE
Q 037859 276 ------SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERII 349 (504)
Q Consensus 276 ------~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~~~~iv 349 (504)
..++||||||||.+- ......||..++. +.+++
T Consensus 99 ~~~~~~~~~~iLfIDEI~~l~-----------------------------------~~~q~~LL~~le~------~~v~l 137 (447)
T 3pvs_A 99 RQNRNAGRRTILFVDEVHRFN-----------------------------------KSQQDAFLPHIED------GTITF 137 (447)
T ss_dssp HHHHHTTCCEEEEEETTTCC-----------------------------------------CCHHHHHT------TSCEE
T ss_pred HHhhhcCCCcEEEEeChhhhC-----------------------------------HHHHHHHHHHHhc------CceEE
Confidence 368999999999862 1133457777764 23566
Q ss_pred EEec--CCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcC
Q 037859 350 VFTT--NYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLD 392 (504)
Q Consensus 350 I~tT--N~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~ 392 (504)
|++| |....++++|++ |+. .+.|+.|+.+++..++++++.
T Consensus 138 I~att~n~~~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~ 179 (447)
T 3pvs_A 138 IGATTENPSFELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAME 179 (447)
T ss_dssp EEEESSCGGGSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHH
T ss_pred EecCCCCcccccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHH
Confidence 6655 555689999999 885 788999999999999998864
No 46
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.62 E-value=1e-15 Score=150.62 Aligned_cols=136 Identities=23% Similarity=0.294 Sum_probs=97.7
Q ss_pred cccccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccC---C----hHHHHHHHHhc--cCCeEEEEecccccccccccc
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQ---D----NSELRSLLIDT--SSKSILVIEDIDCSLDLTGQR 296 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~---~----~~~l~~l~~~~--~~~~Il~iDeiD~~~~~~~~~ 296 (504)
++++|||||||||||++|+++|+.++.+++.+++.... . ...++.+|..+ ..++||||||||.++. .+
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~---~~ 140 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLD---YV 140 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTT---CB
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhc---cC
Confidence 67899999999999999999999999999999876421 1 13466667654 4689999999999753 11
Q ss_pred cccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccCCCceEEEEecCCCCCCCh-hhhcCCCceeEEEe
Q 037859 297 EKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERIIVFTTNYVDKLDP-ALIRRGRMDKHIEM 375 (504)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~~~~ivI~tTN~~e~Ld~-ALlRpGR~d~~I~~ 375 (504)
. .+.......+..|+..+++... .+..++||+|||.++.+|+ ++.+ ||+..|++
T Consensus 141 ~----------------------~~~~~~~~~l~~L~~~~~~~~~-~~~~~~ii~ttn~~~~l~~~~l~~--rf~~~i~~ 195 (272)
T 1d2n_A 141 P----------------------IGPRFSNLVLQALLVLLKKAPP-QGRKLLIIGTTSRKDVLQEMEMLN--AFSTTIHV 195 (272)
T ss_dssp T----------------------TTTBCCHHHHHHHHHHTTCCCS-TTCEEEEEEEESCHHHHHHTTCTT--TSSEEEEC
T ss_pred C----------------------CChhHHHHHHHHHHHHhcCccC-CCCCEEEEEecCChhhcchhhhhc--ccceEEcC
Confidence 0 1112234456667777776532 3455789999999999988 5555 99999999
Q ss_pred cCCCH-HHHHHHHHH
Q 037859 376 SYCCF-EAFKVLAKN 389 (504)
Q Consensus 376 ~~p~~-e~~~~i~~~ 389 (504)
+.++. ++...++..
T Consensus 196 p~l~~r~~i~~i~~~ 210 (272)
T 1d2n_A 196 PNIATGEQLLEALEL 210 (272)
T ss_dssp CCEEEHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHh
Confidence 87654 555555443
No 47
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.62 E-value=2e-15 Score=150.94 Aligned_cols=169 Identities=15% Similarity=0.287 Sum_probs=116.8
Q ss_pred ccccChhHHHHHHHhhc-------------ccccccCCCCCcHHHHHHHHHHhc---CCcEEEEeccccCChHHHHHHHH
Q 037859 210 TLAMETKKKEEIKKDLK-------------KGYLLYGPPGTGKSTMIAAMANFL---NYDVYDLELTTVQDNSELRSLLI 273 (504)
Q Consensus 210 ~~~~~~~~k~~i~~~l~-------------rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~~~~~~l~~l~~ 273 (504)
.+++....++.+...+. ..+||+||||||||++|+++|+.+ +.+++.++++..........++.
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 97 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIG 97 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHHHHHC
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHHHhcC
Confidence 45566777777766661 258999999999999999999998 55699999987654333333321
Q ss_pred ---------------h---ccCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhh
Q 037859 274 ---------------D---TSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNF 335 (504)
Q Consensus 274 ---------------~---~~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ 335 (504)
. ....+||||||||.+- ....+.|+..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~-----------------------------------~~~~~~Ll~~ 142 (311)
T 4fcw_A 98 APPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAH-----------------------------------PDVFNILLQM 142 (311)
T ss_dssp CCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSC-----------------------------------HHHHHHHHHH
T ss_pred CCCccccccccchHHHHHHhCCCeEEEEeChhhcC-----------------------------------HHHHHHHHHH
Confidence 1 1245899999999851 2356677777
Q ss_pred hcCccccCC-------CceEEEEecCC--------------------------CCCCChhhhcCCCceeEEEecCCCHHH
Q 037859 336 IDGLWSASG-------EERIIVFTTNY--------------------------VDKLDPALIRRGRMDKHIEMSYCCFEA 382 (504)
Q Consensus 336 lDg~~~~~~-------~~~ivI~tTN~--------------------------~e~Ld~ALlRpGR~d~~I~~~~p~~e~ 382 (504)
|+....... .+.++|+|||. ...++|+|++ ||+..+.+.+|+.++
T Consensus 143 le~~~~~~~~~~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~ 220 (311)
T 4fcw_A 143 LDDGRLTDSHGRTVDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQ 220 (311)
T ss_dssp HHHSEEECTTSCEEECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHH
T ss_pred HhcCEEEcCCCCEEECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHH
Confidence 764321111 25789999998 5578999998 999999999999999
Q ss_pred HHHHHHHhcCcCCcchHHHHhcCccCCCCCHHHHHHh
Q 037859 383 FKVLAKNYLDIDSHELYAVIESMPAETNMTPADVAEN 419 (504)
Q Consensus 383 ~~~i~~~~l~~~~~~~~~~i~~l~~~~~~s~a~i~~~ 419 (504)
+..|++.++.. ....+...-....++++.+..+
T Consensus 221 ~~~i~~~~l~~----~~~~~~~~~~~~~~~~~~~~~l 253 (311)
T 4fcw_A 221 IRQIVEIQMSY----LRARLAEKRISLELTEAAKDFL 253 (311)
T ss_dssp HHHHHHHHTHH----HHHHHHTTTCEEEECHHHHHHH
T ss_pred HHHHHHHHHHH----HHHHHHhCCcEEEeCHHHHHHH
Confidence 99999998742 1122221111235777666543
No 48
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.60 E-value=3.2e-15 Score=151.84 Aligned_cols=148 Identities=20% Similarity=0.277 Sum_probs=112.8
Q ss_pred CCCccccccccChhHHHHHHHhhc----ccccccCCCCCcHHHHHHHHHHhcC------CcEEEEeccccCChHHHHHHH
Q 037859 203 EHPATFDTLAMETKKKEEIKKDLK----KGYLLYGPPGTGKSTMIAAMANFLN------YDVYDLELTTVQDNSELRSLL 272 (504)
Q Consensus 203 ~~p~~f~~~~~~~~~k~~i~~~l~----rg~LL~GPpGtGKTsla~aiA~~l~------~~i~~l~~~~~~~~~~l~~l~ 272 (504)
..|.+|+.+++.++.++.+...+. .++|||||||||||++++++|+.++ ..+..++++.......++..+
T Consensus 31 ~~p~~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (353)
T 1sxj_D 31 YRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKV 110 (353)
T ss_dssp TCCSSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTTHH
T ss_pred cCCCCHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHHHHHH
Confidence 478899999999999999998883 3499999999999999999999864 457788877654444443322
Q ss_pred ---Hh---------------ccCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhh
Q 037859 273 ---ID---------------TSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLN 334 (504)
Q Consensus 273 ---~~---------------~~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~ 334 (504)
.. .+.+.||+|||+|.+. ....+.|+.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~-----------------------------------~~~~~~Ll~ 155 (353)
T 1sxj_D 111 KNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMT-----------------------------------ADAQSALRR 155 (353)
T ss_dssp HHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSC-----------------------------------HHHHHHHHH
T ss_pred HHHhhhcccccchhhcccCCCCCceEEEEECCCccC-----------------------------------HHHHHHHHH
Confidence 11 1345799999999862 123456777
Q ss_pred hhcCccccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcC
Q 037859 335 FIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLD 392 (504)
Q Consensus 335 ~lDg~~~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~ 392 (504)
.++.. .....+|++||+++.+++++.+ |+. .+.|+.|+.++...+++..+.
T Consensus 156 ~le~~----~~~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~ 206 (353)
T 1sxj_D 156 TMETY----SGVTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISE 206 (353)
T ss_dssp HHHHT----TTTEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHH
T ss_pred HHHhc----CCCceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHH
Confidence 76643 2345677889999999999999 885 899999999999888887653
No 49
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.58 E-value=4.7e-15 Score=148.70 Aligned_cols=148 Identities=18% Similarity=0.239 Sum_probs=111.4
Q ss_pred CCCccccccccChhHHHHHHHhhc----ccccccCCCCCcHHHHHHHHHHhcC-----CcEEEEeccccCChHHHHHHHH
Q 037859 203 EHPATFDTLAMETKKKEEIKKDLK----KGYLLYGPPGTGKSTMIAAMANFLN-----YDVYDLELTTVQDNSELRSLLI 273 (504)
Q Consensus 203 ~~p~~f~~~~~~~~~k~~i~~~l~----rg~LL~GPpGtGKTsla~aiA~~l~-----~~i~~l~~~~~~~~~~l~~l~~ 273 (504)
..|.+|+.+++.++.++.+...+. .++|||||||||||++|+++|+.+. .+++.++++...+...++..+.
T Consensus 19 ~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (327)
T 1iqp_A 19 YRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVIREKVK 98 (327)
T ss_dssp TCCCSTTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTTHHHHH
T ss_pred cCCCCHHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHHHHHHHH
Confidence 568889999999999999888872 2499999999999999999999863 3467777654322222222221
Q ss_pred ----hc----cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccCCC
Q 037859 274 ----DT----SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGE 345 (504)
Q Consensus 274 ----~~----~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~~ 345 (504)
.. ..+.||+|||+|.+. ....+.|+..++.. ..
T Consensus 99 ~~~~~~~~~~~~~~vliiDe~~~l~-----------------------------------~~~~~~L~~~le~~----~~ 139 (327)
T 1iqp_A 99 EFARTKPIGGASFKIIFLDEADALT-----------------------------------QDAQQALRRTMEMF----SS 139 (327)
T ss_dssp HHHHSCCGGGCSCEEEEEETGGGSC-----------------------------------HHHHHHHHHHHHHT----TT
T ss_pred HHHhhCCcCCCCCeEEEEeCCCcCC-----------------------------------HHHHHHHHHHHHhc----CC
Confidence 11 357899999999852 12455667666643 34
Q ss_pred ceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcC
Q 037859 346 ERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLD 392 (504)
Q Consensus 346 ~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~ 392 (504)
..++|++||.++.+++++.+ |+. .+.|+.++.++...+++.++.
T Consensus 140 ~~~~i~~~~~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~ 183 (327)
T 1iqp_A 140 NVRFILSCNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAE 183 (327)
T ss_dssp TEEEEEEESCGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHH
T ss_pred CCeEEEEeCCccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHH
Confidence 57888899999999999999 885 799999999999998887764
No 50
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.58 E-value=1.2e-14 Score=148.81 Aligned_cols=148 Identities=18% Similarity=0.309 Sum_probs=113.2
Q ss_pred CCCccccccccChhHHHHHHHhh-----cccccccCCCCCcHHHHHHHHHHhcCC------------------------c
Q 037859 203 EHPATFDTLAMETKKKEEIKKDL-----KKGYLLYGPPGTGKSTMIAAMANFLNY------------------------D 253 (504)
Q Consensus 203 ~~p~~f~~~~~~~~~k~~i~~~l-----~rg~LL~GPpGtGKTsla~aiA~~l~~------------------------~ 253 (504)
..|..|+++++.+..++.+...+ +..|||+||||||||++++++|+.++. +
T Consensus 10 ~rp~~~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (373)
T 1jr3_A 10 WRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVD 89 (373)
T ss_dssp TCCCSTTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSS
T ss_pred hCCCchhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCc
Confidence 46788999999999988888877 345899999999999999999998864 3
Q ss_pred EEEEeccccCChHHHHHHHHhc------cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhh
Q 037859 254 VYDLELTTVQDNSELRSLLIDT------SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKV 327 (504)
Q Consensus 254 i~~l~~~~~~~~~~l~~l~~~~------~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (504)
++.++.........++.++... ..+.||+|||+|.+- ..
T Consensus 90 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~-----------------------------------~~ 134 (373)
T 1jr3_A 90 LIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS-----------------------------------RH 134 (373)
T ss_dssp CEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSC-----------------------------------HH
T ss_pred eEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhc-----------------------------------HH
Confidence 4555543322223455555543 246899999999851 22
Q ss_pred HHHHHhhhhcCccccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcC
Q 037859 328 TLSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLD 392 (504)
Q Consensus 328 ~ls~lL~~lDg~~~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~ 392 (504)
..+.|+..++.. ...+++|++||.++.+++++.+ |+ ..+.|+.|+.++...+++.++.
T Consensus 135 ~~~~Ll~~le~~----~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~ 192 (373)
T 1jr3_A 135 SFNALLKTLEEP----PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILN 192 (373)
T ss_dssp HHHHHHHHHHSC----CSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC----CCceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHH
Confidence 456677777643 3458899999999999999998 87 6899999999999999987763
No 51
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.57 E-value=1.9e-15 Score=138.48 Aligned_cols=141 Identities=18% Similarity=0.264 Sum_probs=98.5
Q ss_pred CCccccccccChhHHHHHHHhh----cccccccCCCCCcHHHHHHHHHHhc----------CCcEEEEeccccC----C-
Q 037859 204 HPATFDTLAMETKKKEEIKKDL----KKGYLLYGPPGTGKSTMIAAMANFL----------NYDVYDLELTTVQ----D- 264 (504)
Q Consensus 204 ~p~~f~~~~~~~~~k~~i~~~l----~rg~LL~GPpGtGKTsla~aiA~~l----------~~~i~~l~~~~~~----~- 264 (504)
.|..|+.+++.+...+.+.+.+ ++++||+||||||||++++++|+.+ +.+++.+++..+. .
T Consensus 17 ~~~~~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (187)
T 2p65_A 17 RAGKLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYR 96 (187)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHHHHCCSH
T ss_pred hccccchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhhcCCCch
Confidence 3667889999998888888877 5679999999999999999999987 7788888776542 1
Q ss_pred ---hHHHHHHHHh---ccCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcC
Q 037859 265 ---NSELRSLLID---TSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDG 338 (504)
Q Consensus 265 ---~~~l~~l~~~---~~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg 338 (504)
...+..++.. ...+.||+|||+|.+.. .+. ...........|+..++.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~---~~~-----------------------~~~~~~~~~~~l~~~~~~ 150 (187)
T 2p65_A 97 GDFEERLKSILKEVQDAEGQVVMFIDEIHTVVG---AGA-----------------------VAEGALDAGNILKPMLAR 150 (187)
T ss_dssp HHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSS---SSS-----------------------SCTTSCCTHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcc---ccc-----------------------ccccchHHHHHHHHHHhc
Confidence 1124444433 34678999999999742 110 000011122333333332
Q ss_pred ccccCCCceEEEEecCCCC-----CCChhhhcCCCceeEEEecCCC
Q 037859 339 LWSASGEERIIVFTTNYVD-----KLDPALIRRGRMDKHIEMSYCC 379 (504)
Q Consensus 339 ~~~~~~~~~ivI~tTN~~e-----~Ld~ALlRpGR~d~~I~~~~p~ 379 (504)
..+++|++||.++ .+|++|.+ ||+ .|+++.|+
T Consensus 151 ------~~~~ii~~~~~~~~~~~~~~~~~l~~--R~~-~i~i~~p~ 187 (187)
T 2p65_A 151 ------GELRCIGATTVSEYRQFIEKDKALER--RFQ-QILVEQPS 187 (187)
T ss_dssp ------TCSCEEEEECHHHHHHHTTTCHHHHH--HEE-EEECCSCC
T ss_pred ------CCeeEEEecCHHHHHHHHhccHHHHH--hcC-cccCCCCC
Confidence 3477899998775 68999999 998 59999885
No 52
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.57 E-value=9.7e-15 Score=146.17 Aligned_cols=149 Identities=15% Similarity=0.188 Sum_probs=114.6
Q ss_pred cCCCccccccccChhHHHHHHHhhc----ccccccCCCCCcHHHHHHHHHHhc-----CCcEEEEeccccCChHHHHHHH
Q 037859 202 FEHPATFDTLAMETKKKEEIKKDLK----KGYLLYGPPGTGKSTMIAAMANFL-----NYDVYDLELTTVQDNSELRSLL 272 (504)
Q Consensus 202 ~~~p~~f~~~~~~~~~k~~i~~~l~----rg~LL~GPpGtGKTsla~aiA~~l-----~~~i~~l~~~~~~~~~~l~~l~ 272 (504)
-..|..|+.+++.+..++.+...+. ..+|||||||||||++++++|+.+ +.+++.+++....+...++.++
T Consensus 14 ~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~ 93 (323)
T 1sxj_B 14 KYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVVRNQI 93 (323)
T ss_dssp HTCCSSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHHHTHH
T ss_pred hcCCCCHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHHHHHH
Confidence 3568889999999999998888872 239999999999999999999986 3457778776654455565554
Q ss_pred Hhc---------cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccC
Q 037859 273 IDT---------SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSAS 343 (504)
Q Consensus 273 ~~~---------~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~ 343 (504)
... ..+.||+|||+|.+. ......|+..++..
T Consensus 94 ~~~~~~~~~~~~~~~~viiiDe~~~l~-----------------------------------~~~~~~L~~~le~~---- 134 (323)
T 1sxj_B 94 KHFAQKKLHLPPGKHKIVILDEADSMT-----------------------------------AGAQQALRRTMELY---- 134 (323)
T ss_dssp HHHHHBCCCCCTTCCEEEEEESGGGSC-----------------------------------HHHHHTTHHHHHHT----
T ss_pred HHHHhccccCCCCCceEEEEECcccCC-----------------------------------HHHHHHHHHHHhcc----
Confidence 421 247899999999862 12345566666542
Q ss_pred CCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcC
Q 037859 344 GEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLD 392 (504)
Q Consensus 344 ~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~ 392 (504)
....++|++||.++.+++++.+ |+. .+.|+.|+.++...+++.++.
T Consensus 135 ~~~~~~il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~ 180 (323)
T 1sxj_B 135 SNSTRFAFACNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIK 180 (323)
T ss_dssp TTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHH
T ss_pred CCCceEEEEeCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHH
Confidence 2457888899999999999999 874 899999999999999887653
No 53
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.56 E-value=1.8e-14 Score=154.88 Aligned_cols=155 Identities=17% Similarity=0.280 Sum_probs=108.7
Q ss_pred ccceeeecCCCccccccccChhHHHHHHHhhc---------------------ccccccCCCCCcHHHHHHHHHHhcCCc
Q 037859 195 TKWSHVFFEHPATFDTLAMETKKKEEIKKDLK---------------------KGYLLYGPPGTGKSTMIAAMANFLNYD 253 (504)
Q Consensus 195 ~~w~~~~~~~p~~f~~~~~~~~~k~~i~~~l~---------------------rg~LL~GPpGtGKTsla~aiA~~l~~~ 253 (504)
..|.. -..|.+|+++++.+..++.+...+. +++||+||||||||++|+++|++++++
T Consensus 27 ~lW~e--kyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~ 104 (516)
T 1sxj_A 27 KLWTV--KYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYD 104 (516)
T ss_dssp CCHHH--HTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCE
T ss_pred CCccc--ccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 35652 3568899999999999998888771 579999999999999999999999999
Q ss_pred EEEEeccccCChHHHHHHHH-------------h-------ccCCeEEEEecccccccccccccccccccccccccCccc
Q 037859 254 VYDLELTTVQDNSELRSLLI-------------D-------TSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIE 313 (504)
Q Consensus 254 i~~l~~~~~~~~~~l~~l~~-------------~-------~~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (504)
++.++++.......+...+. . ...++||||||+|.+.. .
T Consensus 105 ~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~---~------------------ 163 (516)
T 1sxj_A 105 ILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSG---G------------------ 163 (516)
T ss_dssp EEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCT---T------------------
T ss_pred EEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccch---h------------------
Confidence 99999988765544433322 1 14679999999998631 0
Q ss_pred ccccccCCCcchhhHHHHHhhhhcCccccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhc
Q 037859 314 KKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYL 391 (504)
Q Consensus 314 ~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l 391 (504)
....+..|++.++.. ...+|+|+++.....++ ++.| | ...|.|+.|+.+++..++...+
T Consensus 164 -----------~~~~l~~L~~~l~~~----~~~iIli~~~~~~~~l~-~l~~--r-~~~i~f~~~~~~~~~~~L~~i~ 222 (516)
T 1sxj_A 164 -----------DRGGVGQLAQFCRKT----STPLILICNERNLPKMR-PFDR--V-CLDIQFRRPDANSIKSRLMTIA 222 (516)
T ss_dssp -----------STTHHHHHHHHHHHC----SSCEEEEESCTTSSTTG-GGTT--T-SEEEECCCCCHHHHHHHHHHHH
T ss_pred -----------hHHHHHHHHHHHHhc----CCCEEEEEcCCCCccch-hhHh--c-eEEEEeCCCCHHHHHHHHHHHH
Confidence 011345555555432 22233333333333443 4544 4 4689999999999998887765
No 54
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.55 E-value=8.3e-15 Score=148.73 Aligned_cols=151 Identities=20% Similarity=0.200 Sum_probs=101.3
Q ss_pred cCCCccccccccChhHHHHHHHhh----cccccccCCCCCcHHHHHHHHHHhcCCc------------------------
Q 037859 202 FEHPATFDTLAMETKKKEEIKKDL----KKGYLLYGPPGTGKSTMIAAMANFLNYD------------------------ 253 (504)
Q Consensus 202 ~~~p~~f~~~~~~~~~k~~i~~~l----~rg~LL~GPpGtGKTsla~aiA~~l~~~------------------------ 253 (504)
...|.+|+++++.+..++.+...+ ..++|||||||||||++|+++|+.++..
T Consensus 17 ~~~~~~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (350)
T 1g8p_A 17 TRPVFPFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLS 96 (350)
T ss_dssp -CCCCCGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCSC
T ss_pred CCCCCCchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCccccccccccccccccccccchhhhhc
Confidence 335677999999988777655443 5679999999999999999999998631
Q ss_pred ---------EEEEeccccCChHHH------HHHHHhc-----------cCCeEEEEeccccccccccccccccccccccc
Q 037859 254 ---------VYDLELTTVQDNSEL------RSLLIDT-----------SSKSILVIEDIDCSLDLTGQREKKKEKDEDKE 307 (504)
Q Consensus 254 ---------i~~l~~~~~~~~~~l------~~l~~~~-----------~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~ 307 (504)
++.+..+ .....+ .+.+... ..++||||||||.+-
T Consensus 97 ~~~~~~~~~~~~~~~~--~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~----------------- 157 (350)
T 1g8p_A 97 TNVIRKPTPVVDLPLG--VSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLE----------------- 157 (350)
T ss_dssp CCEEEECCCEEEECTT--CCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSC-----------------
T ss_pred cccccCCCcccccCCC--cchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCC-----------------
Confidence 1111111 111122 2222211 247899999999852
Q ss_pred ccCcccccccccCCCcchhhHHHHHhhhhcCc----cc-----cCCCceEEEEecCCCC-CCChhhhcCCCceeEEEecC
Q 037859 308 EKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGL----WS-----ASGEERIIVFTTNYVD-KLDPALIRRGRMDKHIEMSY 377 (504)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~----~~-----~~~~~~ivI~tTN~~e-~Ld~ALlRpGR~d~~I~~~~ 377 (504)
......|+..++.- .. .....+++|+|||..+ .++++|++ ||+.++++++
T Consensus 158 ------------------~~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~ 217 (350)
T 1g8p_A 158 ------------------DHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLS 217 (350)
T ss_dssp ------------------HHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEECCC
T ss_pred ------------------HHHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceEEEcCC
Confidence 12345566555421 10 0112578899999755 89999999 9999999999
Q ss_pred C-CHHHHHHHHHHhc
Q 037859 378 C-CFEAFKVLAKNYL 391 (504)
Q Consensus 378 p-~~e~~~~i~~~~l 391 (504)
| +.+.+..|++..+
T Consensus 218 ~~~~~~~~~il~~~~ 232 (350)
T 1g8p_A 218 PRDVETRVEVIRRRD 232 (350)
T ss_dssp CCSHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHH
Confidence 9 6777878887754
No 55
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.55 E-value=7.2e-14 Score=141.90 Aligned_cols=154 Identities=19% Similarity=0.268 Sum_probs=114.2
Q ss_pred ecCCCccccccccChhHHHHHHHhhc---------ccccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccCChHHHHHH
Q 037859 201 FFEHPATFDTLAMETKKKEEIKKDLK---------KGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQDNSELRSL 271 (504)
Q Consensus 201 ~~~~p~~f~~~~~~~~~k~~i~~~l~---------rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~~l~~l 271 (504)
..-.|..|+.+.+.+..++.+-..+. ..++|+||||||||+|++++|+.++.++...+........++..+
T Consensus 17 ~~lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~ 96 (334)
T 1in4_A 17 QFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAI 96 (334)
T ss_dssp CTTSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHH
T ss_pred HHcCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHH
Confidence 44578889999988877777666552 559999999999999999999999998877766555556677777
Q ss_pred HHhccCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCcc-------cc--
Q 037859 272 LIDTSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLW-------SA-- 342 (504)
Q Consensus 272 ~~~~~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~-------~~-- 342 (504)
+.....+.|++|||+|.+.. . ....|+..+.... ..
T Consensus 97 ~~~~~~~~v~~iDE~~~l~~---~--------------------------------~~e~L~~~~~~~~~~i~~~~~~~~ 141 (334)
T 1in4_A 97 LTSLERGDVLFIDEIHRLNK---A--------------------------------VEELLYSAIEDFQIDIMIGKGPSA 141 (334)
T ss_dssp HHHCCTTCEEEEETGGGCCH---H--------------------------------HHHHHHHHHHTSCCCC--------
T ss_pred HHHccCCCEEEEcchhhcCH---H--------------------------------HHHHHHHHHHhcccceeeccCccc
Confidence 76666788999999998631 0 1111122121100 00
Q ss_pred -----CCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhc
Q 037859 343 -----SGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYL 391 (504)
Q Consensus 343 -----~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l 391 (504)
.-..+.++.+||++..|++++++ ||...+.+++++.+++..+++...
T Consensus 142 ~~i~~~l~~~~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~ 193 (334)
T 1in4_A 142 KSIRIDIQPFTLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAA 193 (334)
T ss_dssp -------CCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHH
T ss_pred ccccccCCCeEEEEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHH
Confidence 00235677899999999999999 999899999999999999998765
No 56
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.54 E-value=5.6e-14 Score=144.82 Aligned_cols=141 Identities=21% Similarity=0.310 Sum_probs=93.5
Q ss_pred ccccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccCC--------hHHHHHHHHhc------cCCeEEEEecccccccc
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQD--------NSELRSLLIDT------SSKSILVIEDIDCSLDL 292 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~--------~~~l~~l~~~~------~~~~Il~iDeiD~~~~~ 292 (504)
.++||+||||||||++|+++|+.++.+++.+++..+.. ...+..++... ..++||||||||.+..
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~- 151 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISR- 151 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC---
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhh-
Confidence 46999999999999999999999999999999887631 12344555433 2689999999999742
Q ss_pred cccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccc-----------------cCCCceEEEEecCC
Q 037859 293 TGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWS-----------------ASGEERIIVFTTNY 355 (504)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~-----------------~~~~~~ivI~tTN~ 355 (504)
.+.. .....+.......+.||..||+..- ....++++|+|||.
T Consensus 152 --~~~~------------------~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~ 211 (376)
T 1um8_A 152 --LSEN------------------RSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAF 211 (376)
T ss_dssp --------------------------------CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECC
T ss_pred --hcCC------------------CceecccchHHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCH
Confidence 1100 0001111223367888888886410 00133577888772
Q ss_pred C-----------------------------------------CCCChhhhcCCCceeEEEecCCCHHHHHHHHHHh
Q 037859 356 V-----------------------------------------DKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNY 390 (504)
Q Consensus 356 ~-----------------------------------------e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~ 390 (504)
. ..+.|+|+. ||+..|.|+.++.++...|+...
T Consensus 212 ~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~~--R~~~~i~~~~l~~~~l~~i~~~~ 285 (376)
T 1um8_A 212 DGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELIG--RLPVLSTLDSISLEAMVDILQKP 285 (376)
T ss_dssp TTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHHT--TCCEEEECCCCCHHHHHHHHHSS
T ss_pred HHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHHhc--CCCceeeccCCCHHHHHHHHhhh
Confidence 1 135677777 88888899999998888888743
No 57
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.54 E-value=1.1e-14 Score=146.96 Aligned_cols=151 Identities=19% Similarity=0.253 Sum_probs=100.0
Q ss_pred cCCCccccccc-cChh--HHHHHHHhh------cccccccCCCCCcHHHHHHHHHHhc---CCcEEEEeccccCChHHHH
Q 037859 202 FEHPATFDTLA-METK--KKEEIKKDL------KKGYLLYGPPGTGKSTMIAAMANFL---NYDVYDLELTTVQDNSELR 269 (504)
Q Consensus 202 ~~~p~~f~~~~-~~~~--~k~~i~~~l------~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~~~~~~l~ 269 (504)
+....+|++++ ++.. ....+...+ .++++||||||||||++++++|+.+ +.+++.+++..+. ..+.
T Consensus 4 l~~~~~f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~--~~~~ 81 (324)
T 1l8q_A 4 LNPKYTLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFA--QAMV 81 (324)
T ss_dssp CCTTCCSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH--HHHH
T ss_pred CCCCCCcccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHH--HHHH
Confidence 44456788876 3222 222222222 2579999999999999999999998 8999999887642 1111
Q ss_pred ---------HHHHhccCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCcc
Q 037859 270 ---------SLLIDTSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLW 340 (504)
Q Consensus 270 ---------~l~~~~~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~ 340 (504)
........+.||||||||.+.. . ......++..++...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~vL~iDEi~~l~~---~------------------------------~~~~~~l~~~l~~~~ 128 (324)
T 1l8q_A 82 EHLKKGTINEFRNMYKSVDLLLLDDVQFLSG---K------------------------------ERTQIEFFHIFNTLY 128 (324)
T ss_dssp HHHHHTCHHHHHHHHHTCSEEEEECGGGGTT---C------------------------------HHHHHHHHHHHHHHH
T ss_pred HHHHcCcHHHHHHHhcCCCEEEEcCcccccC---C------------------------------hHHHHHHHHHHHHHH
Confidence 1111224589999999998621 0 012233444444332
Q ss_pred ccCCCceEEEEecCCCC---CCChhhhcCCCce--eEEEecCCCHHHHHHHHHHhcC
Q 037859 341 SASGEERIIVFTTNYVD---KLDPALIRRGRMD--KHIEMSYCCFEAFKVLAKNYLD 392 (504)
Q Consensus 341 ~~~~~~~ivI~tTN~~e---~Ld~ALlRpGR~d--~~I~~~~p~~e~~~~i~~~~l~ 392 (504)
. .+.++|+.++|.+. .++++|.+ ||+ ..++++. +.+++..+++.++.
T Consensus 129 ~--~~~~iii~~~~~~~~l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~ 180 (324)
T 1l8q_A 129 L--LEKQIILASDRHPQKLDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLK 180 (324)
T ss_dssp H--TTCEEEEEESSCGGGCTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHH
T ss_pred H--CCCeEEEEecCChHHHHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHH
Confidence 1 23356666666665 68999999 886 7899999 99999999998864
No 58
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.54 E-value=3.4e-14 Score=145.50 Aligned_cols=152 Identities=16% Similarity=0.173 Sum_probs=110.1
Q ss_pred cccccccChhHHHHHHHhh--------cccccccCCCCCcHHHHHHHHHHhc---------CCcEEEEeccccCCh----
Q 037859 207 TFDTLAMETKKKEEIKKDL--------KKGYLLYGPPGTGKSTMIAAMANFL---------NYDVYDLELTTVQDN---- 265 (504)
Q Consensus 207 ~f~~~~~~~~~k~~i~~~l--------~rg~LL~GPpGtGKTsla~aiA~~l---------~~~i~~l~~~~~~~~---- 265 (504)
.++.+++.+...+.+...+ +++++|+||||||||++++++++.+ +.+++.+++....+.
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 96 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVA 96 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHH
Confidence 3477888888888888776 4569999999999999999999988 788888987754321
Q ss_pred ------------------HHH-HHHHH---hccCCeEEEEecccccccccccccccccccccccccCcccccccccCCCc
Q 037859 266 ------------------SEL-RSLLI---DTSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSK 323 (504)
Q Consensus 266 ------------------~~l-~~l~~---~~~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (504)
..+ ..++. ....++||+|||+|.+... .
T Consensus 97 ~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~------------------------------~ 146 (387)
T 2v1u_A 97 SAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKR------------------------------P 146 (387)
T ss_dssp HHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHS------------------------------T
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhccc------------------------------C
Confidence 222 22222 2235789999999986310 0
Q ss_pred chhhHHHHHhhhhcCccccCCCceEEEEecCCC---CCCChhhhcCCCcee-EEEecCCCHHHHHHHHHHhcC
Q 037859 324 KSKVTLSGLLNFIDGLWSASGEERIIVFTTNYV---DKLDPALIRRGRMDK-HIEMSYCCFEAFKVLAKNYLD 392 (504)
Q Consensus 324 ~~~~~ls~lL~~lDg~~~~~~~~~ivI~tTN~~---e~Ld~ALlRpGR~d~-~I~~~~p~~e~~~~i~~~~l~ 392 (504)
.....+..+++.++.... +..+++|++||.+ +.+++++.+ ||.. .|.|+.++.++...+++.++.
T Consensus 147 ~~~~~l~~l~~~~~~~~~--~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~ 215 (387)
T 2v1u_A 147 GGQDLLYRITRINQELGD--RVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAE 215 (387)
T ss_dssp THHHHHHHHHHGGGCC-------CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHH
T ss_pred CCChHHHhHhhchhhcCC--CceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHH
Confidence 123456666766654310 3457899999987 789999999 8875 899999999999999988764
No 59
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.54 E-value=7.9e-15 Score=140.14 Aligned_cols=153 Identities=13% Similarity=0.172 Sum_probs=100.9
Q ss_pred ecCCCccccccccCh---hHHHHHHHhh----cccccccCCCCCcHHHHHHHHHHhcC---CcEEEEeccccCChHHHHH
Q 037859 201 FFEHPATFDTLAMET---KKKEEIKKDL----KKGYLLYGPPGTGKSTMIAAMANFLN---YDVYDLELTTVQDNSELRS 270 (504)
Q Consensus 201 ~~~~p~~f~~~~~~~---~~k~~i~~~l----~rg~LL~GPpGtGKTsla~aiA~~l~---~~i~~l~~~~~~~~~~l~~ 270 (504)
++.++.+|+++++.+ ...+.+...+ ++++||+||||||||++++++|+.+. .+++.+++..+.. .+..
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~--~~~~ 97 (242)
T 3bos_A 20 HLPDDETFTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHAS--ISTA 97 (242)
T ss_dssp CCCTTCSTTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGG--SCGG
T ss_pred CCCCCCChhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHH--HHHH
Confidence 445557888888632 3344444433 56799999999999999999998874 7788888876532 1222
Q ss_pred HHHhccCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccCCCceEEE
Q 037859 271 LLIDTSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERIIV 350 (504)
Q Consensus 271 l~~~~~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~~~~ivI 350 (504)
.+.....+.+|+|||+|.+.. .......|+..++..... +...+|
T Consensus 98 ~~~~~~~~~vliiDe~~~~~~---------------------------------~~~~~~~l~~~l~~~~~~--~~~~ii 142 (242)
T 3bos_A 98 LLEGLEQFDLICIDDVDAVAG---------------------------------HPLWEEAIFDLYNRVAEQ--KRGSLI 142 (242)
T ss_dssp GGTTGGGSSEEEEETGGGGTT---------------------------------CHHHHHHHHHHHHHHHHH--CSCEEE
T ss_pred HHHhccCCCEEEEeccccccC---------------------------------CHHHHHHHHHHHHHHHHc--CCCeEE
Confidence 333345689999999998621 001123344444433211 123255
Q ss_pred EecC-CCC---CCChhhhcCCCce--eEEEecCCCHHHHHHHHHHhcC
Q 037859 351 FTTN-YVD---KLDPALIRRGRMD--KHIEMSYCCFEAFKVLAKNYLD 392 (504)
Q Consensus 351 ~tTN-~~e---~Ld~ALlRpGR~d--~~I~~~~p~~e~~~~i~~~~l~ 392 (504)
+||| .++ .+++++.+ |+. ..++++.|+.+++..++..++.
T Consensus 143 ~~~~~~~~~~~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~ 188 (242)
T 3bos_A 143 VSASASPMEAGFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAA 188 (242)
T ss_dssp EEESSCTTTTTCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHH
T ss_pred EEcCCCHHHHHHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHH
Confidence 5554 443 46799999 886 8999999999999999988764
No 60
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.52 E-value=1.7e-14 Score=163.99 Aligned_cols=153 Identities=17% Similarity=0.280 Sum_probs=105.2
Q ss_pred CCccccccccChhHHHHHHHhh----cccccccCCCCCcHHHHHHHHHHhc----------CCcEEEEeccccCCh----
Q 037859 204 HPATFDTLAMETKKKEEIKKDL----KKGYLLYGPPGTGKSTMIAAMANFL----------NYDVYDLELTTVQDN---- 265 (504)
Q Consensus 204 ~p~~f~~~~~~~~~k~~i~~~l----~rg~LL~GPpGtGKTsla~aiA~~l----------~~~i~~l~~~~~~~~---- 265 (504)
.|..|+.+++.++..+.++..+ ++++||+||||||||++++++|+.+ +.+++.++++.+...
T Consensus 165 r~~~ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~ 244 (854)
T 1qvr_A 165 AEGKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYR 244 (854)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC----------
T ss_pred hcCCCcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCccc
Confidence 4778999999999999998887 5679999999999999999999987 889999998876321
Q ss_pred ----HHHHHHHHhc---cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcC
Q 037859 266 ----SELRSLLIDT---SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDG 338 (504)
Q Consensus 266 ----~~l~~l~~~~---~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg 338 (504)
..+..++... ..++||||||+|.+.+ ... ..+ .....+.|+..++
T Consensus 245 g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~---~~~---------------------~~g---~~~~~~~L~~~l~- 296 (854)
T 1qvr_A 245 GEFEERLKAVIQEVVQSQGEVILFIDELHTVVG---AGK---------------------AEG---AVDAGNMLKPALA- 296 (854)
T ss_dssp -CHHHHHHHHHHHHHTTCSSEEEEECCC----------------------------------------------HHHHH-
T ss_pred hHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhc---cCC---------------------ccc---hHHHHHHHHHHHh-
Confidence 3466666554 3679999999999752 110 000 1112222333332
Q ss_pred ccccCCCceEEEEecCCCC----CCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcC
Q 037859 339 LWSASGEERIIVFTTNYVD----KLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLD 392 (504)
Q Consensus 339 ~~~~~~~~~ivI~tTN~~e----~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~ 392 (504)
.+++.+|++||.++ .+|++|.| ||+. |.|+.|+.+++..|++.++.
T Consensus 297 -----~~~i~~I~at~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~ 346 (854)
T 1qvr_A 297 -----RGELRLIGATTLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKE 346 (854)
T ss_dssp -----TTCCCEEEEECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHH
T ss_pred -----CCCeEEEEecCchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhh
Confidence 23467888888775 37999999 9985 99999999999999986653
No 61
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.52 E-value=1.1e-13 Score=146.92 Aligned_cols=143 Identities=20% Similarity=0.247 Sum_probs=106.2
Q ss_pred CCCccccccccChhHHHHHHHhh----cccccccCCCCCcHHHHHHHHHHhc----------CCcEEEEeccccC---Ch
Q 037859 203 EHPATFDTLAMETKKKEEIKKDL----KKGYLLYGPPGTGKSTMIAAMANFL----------NYDVYDLELTTVQ---DN 265 (504)
Q Consensus 203 ~~p~~f~~~~~~~~~k~~i~~~l----~rg~LL~GPpGtGKTsla~aiA~~l----------~~~i~~l~~~~~~---~~ 265 (504)
..|..|+.+++.+...+.++..+ +.++||+||||||||++|+++|..+ +.+++.++++... ..
T Consensus 174 ~r~~~ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~e 253 (468)
T 3pxg_A 174 AKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFE 253 (468)
T ss_dssp TTSSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------C
T ss_pred HhcCCCCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCccccchHH
Confidence 45778999999999999999888 5579999999999999999999997 7889988886211 12
Q ss_pred HHHHHHHHhc--cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccC
Q 037859 266 SELRSLLIDT--SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSAS 343 (504)
Q Consensus 266 ~~l~~l~~~~--~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~ 343 (504)
..++.+|... ..++||||| . . ....+.|+..|+
T Consensus 254 ~~~~~~~~~~~~~~~~iLfiD---~------~------------------------------~~a~~~L~~~L~------ 288 (468)
T 3pxg_A 254 DRLKKVMDEIRQAGNIILFID---A------A------------------------------IDASNILKPSLA------ 288 (468)
T ss_dssp TTHHHHHHHHHTCCCCEEEEC---C--------------------------------------------CCCTT------
T ss_pred HHHHHHHHHHHhcCCeEEEEe---C------c------------------------------hhHHHHHHHhhc------
Confidence 3466666554 368999999 1 0 012234455543
Q ss_pred CCceEEEEecCCCC-----CCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCc
Q 037859 344 GEERIIVFTTNYVD-----KLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDI 393 (504)
Q Consensus 344 ~~~~ivI~tTN~~e-----~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~ 393 (504)
.+.+.+|+|||..+ .+|++|.| ||. .|.|+.|+.+++..|++.++..
T Consensus 289 ~g~v~vI~at~~~e~~~~~~~~~al~~--Rf~-~i~v~~p~~e~~~~iL~~~~~~ 340 (468)
T 3pxg_A 289 RGELQCIGATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDR 340 (468)
T ss_dssp SSSCEEEEECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTT
T ss_pred CCCEEEEecCCHHHHHHHhhcCHHHHH--hCc-cceeCCCCHHHHHHHHHHHHHH
Confidence 24588999999988 68999999 997 5999999999999999988754
No 62
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.51 E-value=7e-14 Score=157.02 Aligned_cols=146 Identities=18% Similarity=0.331 Sum_probs=111.1
Q ss_pred cccccChhHHHHHHHhhc------------c-cccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccCCh----------
Q 037859 209 DTLAMETKKKEEIKKDLK------------K-GYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQDN---------- 265 (504)
Q Consensus 209 ~~~~~~~~~k~~i~~~l~------------r-g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~~---------- 265 (504)
+.+++++..++.+...+. . .+||+||||||||++|+++|+.++.+++.++++.....
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~g~~ 537 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAP 537 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCCCC
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhcCCC
Confidence 457788888877777661 1 48999999999999999999999999999998875321
Q ss_pred ---------HHHHHHHHhccCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhh
Q 037859 266 ---------SELRSLLIDTSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFI 336 (504)
Q Consensus 266 ---------~~l~~l~~~~~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~l 336 (504)
..+...+.. ..++||||||||.+ ....++.||..|
T Consensus 538 ~g~~g~~~~~~l~~~~~~-~~~~vl~lDEi~~~-----------------------------------~~~~~~~Ll~~l 581 (758)
T 1r6b_X 538 PGYVGFDQGGLLTDAVIK-HPHAVLLLDEIEKA-----------------------------------HPDVFNILLQVM 581 (758)
T ss_dssp SCSHHHHHTTHHHHHHHH-CSSEEEEEETGGGS-----------------------------------CHHHHHHHHHHH
T ss_pred CCCcCccccchHHHHHHh-CCCcEEEEeCcccc-----------------------------------CHHHHHHHHHHh
Confidence 123333332 45799999999985 233677888888
Q ss_pred cCcccc--CC-----CceEEEEecCCCC-------------------------CCChhhhcCCCceeEEEecCCCHHHHH
Q 037859 337 DGLWSA--SG-----EERIIVFTTNYVD-------------------------KLDPALIRRGRMDKHIEMSYCCFEAFK 384 (504)
Q Consensus 337 Dg~~~~--~~-----~~~ivI~tTN~~e-------------------------~Ld~ALlRpGR~d~~I~~~~p~~e~~~ 384 (504)
|.-.-. .+ .+.+||+|||... .++|+|+. |||.+|.|+.++.+++.
T Consensus 582 e~~~~~~~~g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~ 659 (758)
T 1r6b_X 582 DNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIH 659 (758)
T ss_dssp HHSEEEETTTEEEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHH
T ss_pred cCcEEEcCCCCEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeCCCCHHHHH
Confidence 732110 01 3478999999753 68899999 99999999999999999
Q ss_pred HHHHHhcC
Q 037859 385 VLAKNYLD 392 (504)
Q Consensus 385 ~i~~~~l~ 392 (504)
.|++.++.
T Consensus 660 ~i~~~~l~ 667 (758)
T 1r6b_X 660 QVVDKFIV 667 (758)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998874
No 63
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.50 E-value=7.3e-14 Score=156.87 Aligned_cols=153 Identities=21% Similarity=0.311 Sum_probs=111.3
Q ss_pred CCccccccccChhHHHHHHHhh----cccccccCCCCCcHHHHHHHHHHhc----------CCcEEEEeccccCC-----
Q 037859 204 HPATFDTLAMETKKKEEIKKDL----KKGYLLYGPPGTGKSTMIAAMANFL----------NYDVYDLELTTVQD----- 264 (504)
Q Consensus 204 ~p~~f~~~~~~~~~k~~i~~~l----~rg~LL~GPpGtGKTsla~aiA~~l----------~~~i~~l~~~~~~~----- 264 (504)
.|..|+.+++.+...+.+++.+ ++++||+||||||||++|+++|+.+ +..++.+++..+..
T Consensus 181 ~~~~~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~ 260 (758)
T 1r6b_X 181 RVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYR 260 (758)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCS
T ss_pred hcCCCCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhcccccc
Confidence 4667999999999999998887 5679999999999999999999987 67788887765431
Q ss_pred ---hHHHHHHHHhcc--CCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCc
Q 037859 265 ---NSELRSLLIDTS--SKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGL 339 (504)
Q Consensus 265 ---~~~l~~l~~~~~--~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~ 339 (504)
...++.++.... .++||||||+|.+++ .+. .........+.|...++
T Consensus 261 g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~---~~~-----------------------~~~~~~~~~~~L~~~l~-- 312 (758)
T 1r6b_X 261 GDFEKRFKALLKQLEQDTNSILFIDEIHTIIG---AGA-----------------------ASGGQVDAANLIKPLLS-- 312 (758)
T ss_dssp SCHHHHHHHHHHHHSSSSCEEEEETTTTTTTT---SCC-----------------------SSSCHHHHHHHHSSCSS--
T ss_pred chHHHHHHHHHHHHHhcCCeEEEEechHHHhh---cCC-----------------------CCcchHHHHHHHHHHHh--
Confidence 245677776654 479999999999752 110 00111222222333332
Q ss_pred cccCCCceEEEEecCCCC-----CCChhhhcCCCceeEEEecCCCHHHHHHHHHHhc
Q 037859 340 WSASGEERIIVFTTNYVD-----KLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYL 391 (504)
Q Consensus 340 ~~~~~~~~ivI~tTN~~e-----~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l 391 (504)
.+++.+|++||.++ .+|++|.| ||+ .|.|+.|+.+++..|++.+.
T Consensus 313 ----~~~~~~I~at~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 313 ----SGKIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp ----SCCCEEEEEECHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHH
T ss_pred ----CCCeEEEEEeCchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHH
Confidence 24578888888643 57899999 997 79999999999999988654
No 64
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.50 E-value=8.7e-14 Score=156.25 Aligned_cols=170 Identities=15% Similarity=0.257 Sum_probs=118.9
Q ss_pred ccccccChhHHHHHHHhhc------------c-cccccCCCCCcHHHHHHHHHHhc---CCcEEEEeccccCCh-----H
Q 037859 208 FDTLAMETKKKEEIKKDLK------------K-GYLLYGPPGTGKSTMIAAMANFL---NYDVYDLELTTVQDN-----S 266 (504)
Q Consensus 208 f~~~~~~~~~k~~i~~~l~------------r-g~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~~~~-----~ 266 (504)
.+.+++++..++.+...+. . ++||+||||||||++|+++|..+ +.+++.++++.+... .
T Consensus 490 ~~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~~~ 569 (758)
T 3pxi_A 490 HSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTSGG 569 (758)
T ss_dssp HTTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC--
T ss_pred hCcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccccc
Confidence 3567788888888877771 1 49999999999999999999998 688999999876421 2
Q ss_pred HHHHHHHhccCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCcccc----
Q 037859 267 ELRSLLIDTSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSA---- 342 (504)
Q Consensus 267 ~l~~l~~~~~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~---- 342 (504)
.+...+. ....+||||||||.+ +...++.||..||.-.-.
T Consensus 570 ~l~~~~~-~~~~~vl~lDEi~~~-----------------------------------~~~~~~~Ll~~le~g~~~~~~g 613 (758)
T 3pxi_A 570 QLTEKVR-RKPYSVVLLDAIEKA-----------------------------------HPDVFNILLQVLEDGRLTDSKG 613 (758)
T ss_dssp -CHHHHH-HCSSSEEEEECGGGS-----------------------------------CHHHHHHHHHHHHHSBCC----
T ss_pred hhhHHHH-hCCCeEEEEeCcccc-----------------------------------CHHHHHHHHHHhccCeEEcCCC
Confidence 3333332 245789999999985 234677788888752111
Q ss_pred ---CCCceEEEEecCCCCC------------CChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCcCCcchHHHHhcCcc
Q 037859 343 ---SGEERIIVFTTNYVDK------------LDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDIDSHELYAVIESMPA 407 (504)
Q Consensus 343 ---~~~~~ivI~tTN~~e~------------Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~~~~~~~~~i~~l~~ 407 (504)
...+.+||+|||.+.. ++|+|+. |||.+|.|++|+.+++..|++.++.. ....+...-.
T Consensus 614 ~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l~~----~~~~~~~~~~ 687 (758)
T 3pxi_A 614 RTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMSDQ----LTKRLKEQDL 687 (758)
T ss_dssp -CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHHHHHH----HHHHHHTTTC
T ss_pred CEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHHHHH----HHHHHHhCCC
Confidence 1234689999997554 7899998 99999999999999999999988732 2222222112
Q ss_pred CCCCCHHHHHHh
Q 037859 408 ETNMTPADVAEN 419 (504)
Q Consensus 408 ~~~~s~a~i~~~ 419 (504)
...++++-+.-+
T Consensus 688 ~~~~~~~a~~~l 699 (758)
T 3pxi_A 688 SIELTDAAKAKV 699 (758)
T ss_dssp EEEECHHHHHHH
T ss_pred eEEECHHHHHHH
Confidence 236777665543
No 65
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.50 E-value=9.9e-14 Score=141.20 Aligned_cols=176 Identities=14% Similarity=0.177 Sum_probs=116.6
Q ss_pred CCCccccccccChhHHHHHHHhh-cc----cccccCCCCCcHHHHHHHHHHhcCC-------------------------
Q 037859 203 EHPATFDTLAMETKKKEEIKKDL-KK----GYLLYGPPGTGKSTMIAAMANFLNY------------------------- 252 (504)
Q Consensus 203 ~~p~~f~~~~~~~~~k~~i~~~l-~r----g~LL~GPpGtGKTsla~aiA~~l~~------------------------- 252 (504)
.+|.+|+++++++..++.+...+ .. .+||+||||||||++++++|+.+..
T Consensus 8 yrP~~~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~ 87 (354)
T 1sxj_E 8 YRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNV 87 (354)
T ss_dssp TCCCSGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CC
T ss_pred cCCCCHHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeee
Confidence 36899999999999999988877 22 2999999999999999999996411
Q ss_pred ----cEEEEeccccC--ChHHHHHHHHh----------------ccCCeEEEEecccccccccccccccccccccccccC
Q 037859 253 ----DVYDLELTTVQ--DNSELRSLLID----------------TSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKN 310 (504)
Q Consensus 253 ----~i~~l~~~~~~--~~~~l~~l~~~----------------~~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~ 310 (504)
+++.++..... ....++..+.. ...+.|++|||+|.+ +
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L-~------------------- 147 (354)
T 1sxj_E 88 VSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSL-T------------------- 147 (354)
T ss_dssp EECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSS-C-------------------
T ss_pred ecccceEEecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCcccc-C-------------------
Confidence 12333332221 11124444332 225679999999984 1
Q ss_pred cccccccccCCCcchhhHHHHHhhhhcCccccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHh
Q 037859 311 PIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNY 390 (504)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~ 390 (504)
....+.|+..|+.. ..+..+|++||.++.+.+++.+ |+ ..+.|+.|+.+++..+++..
T Consensus 148 ---------------~~~~~~L~~~le~~----~~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~ 205 (354)
T 1sxj_E 148 ---------------KDAQAALRRTMEKY----SKNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDV 205 (354)
T ss_dssp ---------------HHHHHHHHHHHHHS----TTTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHH
T ss_pred ---------------HHHHHHHHHHHHhh----cCCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHH
Confidence 12345566666543 2347889999999999999999 88 78999999999999999877
Q ss_pred cCcCCcch--HHHHhcCccCCCCCHHHHHHhh
Q 037859 391 LDIDSHEL--YAVIESMPAETNMTPADVAENL 420 (504)
Q Consensus 391 l~~~~~~~--~~~i~~l~~~~~~s~a~i~~~l 420 (504)
+....... .+.++.++...+=+++++...+
T Consensus 206 ~~~~~~~~~~~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 206 VTNERIQLETKDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp HHHHTCEECCSHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHcCCCCCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 64322111 1223333333344555554443
No 66
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.49 E-value=1.2e-13 Score=138.92 Aligned_cols=127 Identities=11% Similarity=0.159 Sum_probs=94.2
Q ss_pred cccccccCCCCCcHHHHHHHHHHhc----------CCcEEEEeccccCC----------------------hHHHHHHHH
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFL----------NYDVYDLELTTVQD----------------------NSELRSLLI 273 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l----------~~~i~~l~~~~~~~----------------------~~~l~~l~~ 273 (504)
+.++|||||||||||++++++++++ ++.++.++|..+.+ ...|.++|.
T Consensus 45 ~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~ 124 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFYIT 124 (318)
T ss_dssp CCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHH
Confidence 6779999999999999999999998 35677888765432 234566666
Q ss_pred hc----cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccCCCceEE
Q 037859 274 DT----SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERII 349 (504)
Q Consensus 274 ~~----~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~~~~iv 349 (504)
.. ..++||+|||||.+. .+..+..|++... .....++|
T Consensus 125 ~~~~~~~~~~ii~lDE~d~l~----------------------------------~q~~L~~l~~~~~----~~~s~~~v 166 (318)
T 3te6_A 125 NVPKAKKRKTLILIQNPENLL----------------------------------SEKILQYFEKWIS----SKNSKLSI 166 (318)
T ss_dssp HSCGGGSCEEEEEEECCSSSC----------------------------------CTHHHHHHHHHHH----CSSCCEEE
T ss_pred HhhhccCCceEEEEecHHHhh----------------------------------cchHHHHHHhccc----ccCCcEEE
Confidence 53 357899999999973 1235555665432 12345789
Q ss_pred EEecCCCCC----CChhhhcCCCce-eEEEecCCCHHHHHHHHHHhcC
Q 037859 350 VFTTNYVDK----LDPALIRRGRMD-KHIEMSYCCFEAFKVLAKNYLD 392 (504)
Q Consensus 350 I~tTN~~e~----Ld~ALlRpGR~d-~~I~~~~p~~e~~~~i~~~~l~ 392 (504)
|+++|..+. |++++.+ ||+ ..|.|+.++.++...|+++.+.
T Consensus 167 I~i~n~~d~~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 167 ICVGGHNVTIREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp EEECCSSCCCHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHH
T ss_pred EEEecCcccchhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHH
Confidence 999998875 4556677 886 5899999999999999988764
No 67
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.48 E-value=5e-13 Score=135.68 Aligned_cols=150 Identities=13% Similarity=0.147 Sum_probs=107.3
Q ss_pred cccccccCCCCCcHHHHHHHHHHhcCC------------------------cEEEEecc---ccCChHHHHHHHHhc---
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFLNY------------------------DVYDLELT---TVQDNSELRSLLIDT--- 275 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l~~------------------------~i~~l~~~---~~~~~~~l~~l~~~~--- 275 (504)
+.+||||||||||||++|+++|+.+.. +++.++.. .-...+.++.++...
T Consensus 24 ~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~~~i~~ir~l~~~~~~~ 103 (334)
T 1a5t_A 24 HHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLNEH 103 (334)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCSSBCHHHHHHHHHHTTSC
T ss_pred ceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccccCCCCCHHHHHHHHHHHhhc
Confidence 566999999999999999999998753 35566553 222445677766554
Q ss_pred ---cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccCCCceEEEEe
Q 037859 276 ---SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERIIVFT 352 (504)
Q Consensus 276 ---~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~~~~ivI~t 352 (504)
..+.|++|||+|.+- ....+.||..++.- +...++|++
T Consensus 104 ~~~~~~kvviIdead~l~-----------------------------------~~a~naLLk~lEep----~~~~~~Il~ 144 (334)
T 1a5t_A 104 ARLGGAKVVWVTDAALLT-----------------------------------DAAANALLKTLEEP----PAETWFFLA 144 (334)
T ss_dssp CTTSSCEEEEESCGGGBC-----------------------------------HHHHHHHHHHHTSC----CTTEEEEEE
T ss_pred cccCCcEEEEECchhhcC-----------------------------------HHHHHHHHHHhcCC----CCCeEEEEE
Confidence 246899999999861 22467788888753 345788999
Q ss_pred cCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCcCCcchHHHHhcCccCCCCCHHHHHHhhC
Q 037859 353 TNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDIDSHELYAVIESMPAETNMTPADVAENLM 421 (504)
Q Consensus 353 TN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~~~~~~~~~i~~l~~~~~~s~a~i~~~l~ 421 (504)
||.++.++|++++ |+ ..+.|+.|+.++...+++.....+ .+.+..++...+=++..+...+.
T Consensus 145 t~~~~~l~~ti~S--Rc-~~~~~~~~~~~~~~~~L~~~~~~~----~~~~~~l~~~s~G~~r~a~~~l~ 206 (334)
T 1a5t_A 145 TREPERLLATLRS--RC-RLHYLAPPPEQYAVTWLSREVTMS----QDALLAALRLSAGSPGAALALFQ 206 (334)
T ss_dssp ESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHCCCC----HHHHHHHHHHTTTCHHHHHHTTS
T ss_pred eCChHhCcHHHhh--cc-eeeeCCCCCHHHHHHHHHHhcCCC----HHHHHHHHHHcCCCHHHHHHHhc
Confidence 9999999999999 88 579999999999999888776322 12223333334556666655443
No 68
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.48 E-value=1.3e-13 Score=134.92 Aligned_cols=148 Identities=16% Similarity=0.188 Sum_probs=95.7
Q ss_pred ccccccccChhHHHHHHHhh------cccccccCCCCCcHHHHHHHHHHhcC---CcEEEEeccccCChHHHHH-HHH--
Q 037859 206 ATFDTLAMETKKKEEIKKDL------KKGYLLYGPPGTGKSTMIAAMANFLN---YDVYDLELTTVQDNSELRS-LLI-- 273 (504)
Q Consensus 206 ~~f~~~~~~~~~k~~i~~~l------~rg~LL~GPpGtGKTsla~aiA~~l~---~~i~~l~~~~~~~~~~l~~-l~~-- 273 (504)
.+|+.+++.....+.+++.+ +.++||+||||||||++|+++++.+. .+++.++++.+.. ..+.. +|.
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~g~~ 81 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNE-NLLDSELFGHE 81 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCH-HHHHHHHHCCC
T ss_pred cccccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCCh-hHHHHHhcCCc
Confidence 36888888888877777655 67799999999999999999999885 6899999988742 22222 221
Q ss_pred ---------------hccCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcC
Q 037859 274 ---------------DTSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDG 338 (504)
Q Consensus 274 ---------------~~~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg 338 (504)
....+++|||||||.+- ......|+..++.
T Consensus 82 ~~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l~-----------------------------------~~~q~~Ll~~l~~ 126 (265)
T 2bjv_A 82 AGAFTGAQKRHPGRFERADGGTLFLDELATAP-----------------------------------MMVQEKLLRVIEY 126 (265)
T ss_dssp ---------CCCCHHHHTTTSEEEEESGGGSC-----------------------------------HHHHHHHHHHHHH
T ss_pred ccccccccccccchhhhcCCcEEEEechHhcC-----------------------------------HHHHHHHHHHHHh
Confidence 11346899999999862 1234455555542
Q ss_pred cc-------ccCCCceEEEEecCCC-------CCCChhhhcCCCce-eEEEecCCCH--HHHHHHHHHhc
Q 037859 339 LW-------SASGEERIIVFTTNYV-------DKLDPALIRRGRMD-KHIEMSYCCF--EAFKVLAKNYL 391 (504)
Q Consensus 339 ~~-------~~~~~~~ivI~tTN~~-------e~Ld~ALlRpGR~d-~~I~~~~p~~--e~~~~i~~~~l 391 (504)
-. ......+.+|+|||.. ..++++|.+ ||+ ..|.++..+. ++...+++.++
T Consensus 127 ~~~~~~g~~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~~~i~lp~L~~R~~di~~l~~~~l 194 (265)
T 2bjv_A 127 GELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLD--ALAFDVVQLPPLRERESDIMLMAEYFA 194 (265)
T ss_dssp CEECCCCC--CEECCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCSEEEECCCGGGCHHHHHHHHHHHH
T ss_pred CCeecCCCcccccCCeEEEEecCcCHHHHHHcCCccHHHHH--hhcCcEEeCCChhhhhHHHHHHHHHHH
Confidence 11 0011346789999974 357899999 996 4566665543 56667777765
No 69
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.48 E-value=2e-13 Score=138.77 Aligned_cols=147 Identities=24% Similarity=0.380 Sum_probs=110.0
Q ss_pred CCCccccccccChhHHHHHHHhhccc----ccccCCCCCcHHHHHHHHHHhcCC-----cEEEEeccccCChHHHHHHHH
Q 037859 203 EHPATFDTLAMETKKKEEIKKDLKKG----YLLYGPPGTGKSTMIAAMANFLNY-----DVYDLELTTVQDNSELRSLLI 273 (504)
Q Consensus 203 ~~p~~f~~~~~~~~~k~~i~~~l~rg----~LL~GPpGtGKTsla~aiA~~l~~-----~i~~l~~~~~~~~~~l~~l~~ 273 (504)
..|..|+.+.+++..++.+...+..| ||||||||||||++++++|+.+.. .+..++.+...+...++..+.
T Consensus 19 ~rp~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ir~~i~ 98 (340)
T 1sxj_C 19 YRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIK 98 (340)
T ss_dssp TCCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHTHHH
T ss_pred hCCCcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHHHHHHHHH
Confidence 46889999999998888888877322 899999999999999999998743 366666665444445554432
Q ss_pred h---c-----cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccCCC
Q 037859 274 D---T-----SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGE 345 (504)
Q Consensus 274 ~---~-----~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~~ 345 (504)
. . ..+.|++|||+|.+- ....+.|+..++.. ..
T Consensus 99 ~~~~~~~~~~~~~~viiiDe~~~l~-----------------------------------~~~~~~L~~~le~~----~~ 139 (340)
T 1sxj_C 99 DFASTRQIFSKGFKLIILDEADAMT-----------------------------------NAAQNALRRVIERY----TK 139 (340)
T ss_dssp HHHHBCCSSSCSCEEEEETTGGGSC-----------------------------------HHHHHHHHHHHHHT----TT
T ss_pred HHHhhcccCCCCceEEEEeCCCCCC-----------------------------------HHHHHHHHHHHhcC----CC
Confidence 2 1 247899999999851 12345566666643 23
Q ss_pred ceEEEEecCCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhc
Q 037859 346 ERIIVFTTNYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYL 391 (504)
Q Consensus 346 ~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l 391 (504)
...+|++||.+..+.|++.+ |+. .+.|..++.++...++...+
T Consensus 140 ~~~~il~~n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~ 182 (340)
T 1sxj_C 140 NTRFCVLANYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVL 182 (340)
T ss_dssp TEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHH
T ss_pred CeEEEEEecCccccchhHHh--hce-eEeccCCCHHHHHHHHHHHH
Confidence 46788889999999999999 885 78999999888888777665
No 70
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.48 E-value=9.2e-14 Score=142.71 Aligned_cols=143 Identities=15% Similarity=0.250 Sum_probs=105.3
Q ss_pred cccccChhHHHHHHHhh--------cccccccCCCCCcHHHHHHHHHHhc-----------CCcEEEEeccccC-Ch---
Q 037859 209 DTLAMETKKKEEIKKDL--------KKGYLLYGPPGTGKSTMIAAMANFL-----------NYDVYDLELTTVQ-DN--- 265 (504)
Q Consensus 209 ~~~~~~~~~k~~i~~~l--------~rg~LL~GPpGtGKTsla~aiA~~l-----------~~~i~~l~~~~~~-~~--- 265 (504)
+.+++.+...+.+...+ +++++|+||||||||++++++++.+ +.+++.+++.... +.
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 67888888888777665 4569999999999999999999987 8899999876543 21
Q ss_pred --------------------HH-HHHHHHhcc-CCeEEEEecccccccccccccccccccccccccCcccccccccCCCc
Q 037859 266 --------------------SE-LRSLLIDTS-SKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSK 323 (504)
Q Consensus 266 --------------------~~-l~~l~~~~~-~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (504)
.. +..++.... .+.||+|||+|.+.. .
T Consensus 100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~---~---------------------------- 148 (384)
T 2qby_B 100 LSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVK---R---------------------------- 148 (384)
T ss_dssp HHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHH---S----------------------------
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhcc---C----------------------------
Confidence 11 222222222 234999999998631 0
Q ss_pred chhhH-HHHHhhhhcCccccCCCceEEEEecCCC---CCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcC
Q 037859 324 KSKVT-LSGLLNFIDGLWSASGEERIIVFTTNYV---DKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLD 392 (504)
Q Consensus 324 ~~~~~-ls~lL~~lDg~~~~~~~~~ivI~tTN~~---e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~ 392 (504)
..... +..|+... ..+.+|+|||.. +.+++++.+ ||...|.|+.++.++...+++.++.
T Consensus 149 ~~~~~~l~~l~~~~--------~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~ 211 (384)
T 2qby_B 149 RGGDIVLYQLLRSD--------ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAE 211 (384)
T ss_dssp TTSHHHHHHHHTSS--------SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHH
T ss_pred CCCceeHHHHhcCC--------cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHH
Confidence 00123 55555543 347899999987 789999999 9877999999999999999998763
No 71
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.48 E-value=7.4e-14 Score=147.14 Aligned_cols=153 Identities=16% Similarity=0.246 Sum_probs=99.5
Q ss_pred ecCCCccccccc-cChhH--HHHHHHhh-----cccccccCCCCCcHHHHHHHHHHhc-----CCcEEEEeccccCChHH
Q 037859 201 FFEHPATFDTLA-METKK--KEEIKKDL-----KKGYLLYGPPGTGKSTMIAAMANFL-----NYDVYDLELTTVQDNSE 267 (504)
Q Consensus 201 ~~~~p~~f~~~~-~~~~~--k~~i~~~l-----~rg~LL~GPpGtGKTsla~aiA~~l-----~~~i~~l~~~~~~~~~~ 267 (504)
++....+|++++ ++... ...+.... ..+++||||||||||+|++++|+++ +.+++.+++..+. .+
T Consensus 97 ~l~~~~tfd~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~--~~ 174 (440)
T 2z4s_A 97 PLNPDYTFENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFL--ND 174 (440)
T ss_dssp CCCTTCSGGGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHH--HH
T ss_pred CCCCCCChhhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHH--HH
Confidence 344445788877 43322 22222222 2469999999999999999999988 8889988876642 12
Q ss_pred HHHH---------HHhcc-CCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhc
Q 037859 268 LRSL---------LIDTS-SKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFID 337 (504)
Q Consensus 268 l~~l---------~~~~~-~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lD 337 (504)
+... ..... .+.||||||+|.+.. . ......|+..++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~---~------------------------------~~~q~~l~~~l~ 221 (440)
T 2z4s_A 175 LVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIG---K------------------------------TGVQTELFHTFN 221 (440)
T ss_dssp HHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSS---C------------------------------HHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHhcCCCCEEEEeCcccccC---C------------------------------hHHHHHHHHHHH
Confidence 2211 12224 689999999998631 0 012333444444
Q ss_pred CccccCCCceEEEEecCCCCC---CChhhhcCCCce--eEEEecCCCHHHHHHHHHHhcC
Q 037859 338 GLWSASGEERIIVFTTNYVDK---LDPALIRRGRMD--KHIEMSYCCFEAFKVLAKNYLD 392 (504)
Q Consensus 338 g~~~~~~~~~ivI~tTN~~e~---Ld~ALlRpGR~d--~~I~~~~p~~e~~~~i~~~~l~ 392 (504)
.+.. .+..+||.|.+.+.. ++++|++ ||+ ..+.++.|+.+++..+++.++.
T Consensus 222 ~l~~--~~~~iIitt~~~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~ 277 (440)
T 2z4s_A 222 ELHD--SGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLE 277 (440)
T ss_dssp HHHT--TTCEEEEEESSCGGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHH
T ss_pred HHHH--CCCeEEEEECCCHHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHH
Confidence 3321 223455544444443 8999999 886 7899999999999999988763
No 72
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.46 E-value=1.5e-13 Score=154.42 Aligned_cols=143 Identities=20% Similarity=0.255 Sum_probs=106.9
Q ss_pred CCCccccccccChhHHHHHHHhh----cccccccCCCCCcHHHHHHHHHHhc----------CCcEEEEecccc-C--Ch
Q 037859 203 EHPATFDTLAMETKKKEEIKKDL----KKGYLLYGPPGTGKSTMIAAMANFL----------NYDVYDLELTTV-Q--DN 265 (504)
Q Consensus 203 ~~p~~f~~~~~~~~~k~~i~~~l----~rg~LL~GPpGtGKTsla~aiA~~l----------~~~i~~l~~~~~-~--~~ 265 (504)
..|..|+.+++.+..++.++..+ +.++|||||||||||++|+++|+.+ +.+++.+++..- . ..
T Consensus 174 ~~~~~ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~g~~~~G~~e 253 (758)
T 3pxi_A 174 AKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFE 253 (758)
T ss_dssp TTSSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------C
T ss_pred HhhCCCCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecccccccchHH
Confidence 45678999999999999999888 5679999999999999999999997 888888887221 1 12
Q ss_pred HHHHHHHHhc--cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccC
Q 037859 266 SELRSLLIDT--SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSAS 343 (504)
Q Consensus 266 ~~l~~l~~~~--~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~ 343 (504)
..++.+|... ..++||||| . . ....+.|+..++
T Consensus 254 ~~l~~~~~~~~~~~~~iLfiD---~------~------------------------------~~~~~~L~~~l~------ 288 (758)
T 3pxi_A 254 DRLKKVMDEIRQAGNIILFID---A------A------------------------------IDASNILKPSLA------ 288 (758)
T ss_dssp TTHHHHHHHHHTCCCCEEEEC---C--------------------------------------------CCCTT------
T ss_pred HHHHHHHHHHHhcCCEEEEEc---C------c------------------------------hhHHHHHHHHHh------
Confidence 3566777654 368999999 1 0 012334455544
Q ss_pred CCceEEEEecCCCC-----CCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcCc
Q 037859 344 GEERIIVFTTNYVD-----KLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLDI 393 (504)
Q Consensus 344 ~~~~ivI~tTN~~e-----~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~~ 393 (504)
.+.+.+|+|||..+ .+||||.| ||. .|.|+.|+.+++..|++.+...
T Consensus 289 ~~~v~~I~at~~~~~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~ 340 (758)
T 3pxi_A 289 RGELQCIGATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDR 340 (758)
T ss_dssp SSSCEEEEECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTT
T ss_pred cCCEEEEeCCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHH
Confidence 34588999999988 69999999 995 6999999999999999977653
No 73
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.45 E-value=3.7e-13 Score=137.61 Aligned_cols=150 Identities=19% Similarity=0.253 Sum_probs=108.8
Q ss_pred cccccccChhHHHHHHHhh--------cccccccCCCCCcHHHHHHHHHHhc------CCcEEEEeccccCC--------
Q 037859 207 TFDTLAMETKKKEEIKKDL--------KKGYLLYGPPGTGKSTMIAAMANFL------NYDVYDLELTTVQD-------- 264 (504)
Q Consensus 207 ~f~~~~~~~~~k~~i~~~l--------~rg~LL~GPpGtGKTsla~aiA~~l------~~~i~~l~~~~~~~-------- 264 (504)
.++.+++.+...+.+...+ ++.++|+||||||||++++++++.+ +.+++.+++....+
T Consensus 18 ~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i 97 (386)
T 2qby_A 18 IPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADL 97 (386)
T ss_dssp CCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHH
Confidence 3467888888888887776 3469999999999999999999988 88888888653211
Q ss_pred --------------hHHH----HHHHHhccCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchh
Q 037859 265 --------------NSEL----RSLLIDTSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSK 326 (504)
Q Consensus 265 --------------~~~l----~~l~~~~~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (504)
...+ ...+.....++||+|||+|.+.+.. ..
T Consensus 98 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~-------------------------------~~ 146 (386)
T 2qby_A 98 LESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKY-------------------------------ND 146 (386)
T ss_dssp TTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSS-------------------------------CS
T ss_pred HHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccC-------------------------------cC
Confidence 2222 2222333458999999999874200 12
Q ss_pred hHHHHHhhhhcCccccCCCceEEEEecCCC---CCCChhhhcCCCce-eEEEecCCCHHHHHHHHHHhcC
Q 037859 327 VTLSGLLNFIDGLWSASGEERIIVFTTNYV---DKLDPALIRRGRMD-KHIEMSYCCFEAFKVLAKNYLD 392 (504)
Q Consensus 327 ~~ls~lL~~lDg~~~~~~~~~ivI~tTN~~---e~Ld~ALlRpGR~d-~~I~~~~p~~e~~~~i~~~~l~ 392 (504)
..+..|+..++.. .+..+.+|++||.+ +.+++++.+ ||. ..|.++.++.++...++..++.
T Consensus 147 ~~l~~l~~~~~~~---~~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~ 211 (386)
T 2qby_A 147 DILYKLSRINSEV---NKSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQ 211 (386)
T ss_dssp THHHHHHHHHHSC---CC--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHH
T ss_pred HHHHHHhhchhhc---CCCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHH
Confidence 3567777777654 23457889999877 578899998 775 4899999999999999987653
No 74
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.45 E-value=5.8e-13 Score=136.68 Aligned_cols=148 Identities=16% Similarity=0.124 Sum_probs=108.4
Q ss_pred ccccccChhHHHHHHHhh--------cc--cccccCCCCCcHHHHHHHHHHhc----CCcEEEEeccccCChHH------
Q 037859 208 FDTLAMETKKKEEIKKDL--------KK--GYLLYGPPGTGKSTMIAAMANFL----NYDVYDLELTTVQDNSE------ 267 (504)
Q Consensus 208 f~~~~~~~~~k~~i~~~l--------~r--g~LL~GPpGtGKTsla~aiA~~l----~~~i~~l~~~~~~~~~~------ 267 (504)
++.+++.+...+.+...+ +. .++|+||||||||++++++++.+ +..++.+++....+...
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~ 95 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIA 95 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHH
Confidence 367888888888887777 23 69999999999999999999998 67788888765432211
Q ss_pred --------------------HHHHHHhccCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhh
Q 037859 268 --------------------LRSLLIDTSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKV 327 (504)
Q Consensus 268 --------------------l~~l~~~~~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (504)
+...+.....+.||+|||+|.+ ...
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l-----------------------------------~~~ 140 (389)
T 1fnn_A 96 RSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL-----------------------------------APD 140 (389)
T ss_dssp HHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS-----------------------------------CHH
T ss_pred HHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc-----------------------------------chH
Confidence 1122222346889999999985 123
Q ss_pred HHHHHhhhhcCccccCCCceEEEEecCCC---CCCChhhhcCCCcee-EEEecCCCHHHHHHHHHHhcC
Q 037859 328 TLSGLLNFIDGLWSASGEERIIVFTTNYV---DKLDPALIRRGRMDK-HIEMSYCCFEAFKVLAKNYLD 392 (504)
Q Consensus 328 ~ls~lL~~lDg~~~~~~~~~ivI~tTN~~---e~Ld~ALlRpGR~d~-~I~~~~p~~e~~~~i~~~~l~ 392 (504)
.+..|+..++.........+.+|++||.+ +.+++.+.+ ||.. .|.|+.++.++...++...+.
T Consensus 141 ~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~ 207 (389)
T 1fnn_A 141 ILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAK 207 (389)
T ss_dssp HHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHH
Confidence 56666666654421111357888999988 778999998 8865 899999999999999887764
No 75
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.44 E-value=7.9e-13 Score=162.83 Aligned_cols=156 Identities=22% Similarity=0.347 Sum_probs=108.6
Q ss_pred cccccccChhHHH---HHHHhh---cccccccCCCCCcHHHHH-HHHHHhcCCcEEEEeccccCChHHHHHHHHhc----
Q 037859 207 TFDTLAMETKKKE---EIKKDL---KKGYLLYGPPGTGKSTMI-AAMANFLNYDVYDLELTTVQDNSELRSLLIDT---- 275 (504)
Q Consensus 207 ~f~~~~~~~~~k~---~i~~~l---~rg~LL~GPpGtGKTsla-~aiA~~l~~~i~~l~~~~~~~~~~l~~l~~~~---- 275 (504)
.|.++..+...-. .+++.+ ++++||+||||||||++| +++++..++.++.++++...+...+.+.+...
T Consensus 1242 ~~~~iiVpT~DT~R~~~ll~~~l~~~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~~~~~~~i~~~~~~~ 1321 (2695)
T 4akg_A 1242 MRPDIVIPTIDTIKHEKIFYDLLNSKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHILSALHRHTNYV 1321 (2695)
T ss_dssp SCSSCCCCCHHHHHHHHHHHHHHHHTCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCHHHHHHHHHHHBCCE
T ss_pred CccceeEeccchHHHHHHHHHHHHCCCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCHHHHHHHHHHHhhhc
Confidence 4556555543222 233333 789999999999999999 55666668889999999988888887776542
Q ss_pred -------------cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCcccc
Q 037859 276 -------------SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSA 342 (504)
Q Consensus 276 -------------~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~ 342 (504)
..++||||||||..- . +..+.......+.+++. ..|++..
T Consensus 1322 ~~~~g~~~~P~~~gk~~VlFiDEinmp~-----~---------------------d~yg~q~~lelLRq~le-~gg~yd~ 1374 (2695)
T 4akg_A 1322 TTSKGLTLLPKSDIKNLVLFCDEINLPK-----L---------------------DKYGSQNVVLFLRQLME-KQGFWKT 1374 (2695)
T ss_dssp EETTTEEEEEBSSSSCEEEEEETTTCSC-----C---------------------CSSSCCHHHHHHHHHHH-TSSEECT
T ss_pred cccCCccccCCCCCceEEEEeccccccc-----c---------------------cccCchhHHHHHHHHHh-cCCEEEc
Confidence 135799999999721 0 01122223334445442 2344432
Q ss_pred CC------CceEEEEecCCCC-----CCChhhhcCCCceeEEEecCCCHHHHHHHHHHhcC
Q 037859 343 SG------EERIIVFTTNYVD-----KLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYLD 392 (504)
Q Consensus 343 ~~------~~~ivI~tTN~~e-----~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l~ 392 (504)
.. .++.+|+|||++. .|||+|+| || ..|.+++|+.++++.|++.++.
T Consensus 1375 ~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR--rf-~vi~i~~P~~~~l~~I~~~il~ 1432 (2695)
T 4akg_A 1375 PENKWVTIERIHIVGACNPPTDPGRIPMSERFTR--HA-AILYLGYPSGKSLSQIYEIYYK 1432 (2695)
T ss_dssp TTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT--TE-EEEECCCCTTTHHHHHHHHHHH
T ss_pred CCCcEEEecCEEEEEecCCCccCCCccCChhhhh--ee-eEEEeCCCCHHHHHHHHHHHHH
Confidence 11 2478999999995 79999999 99 7899999999999999987763
No 76
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.43 E-value=8.5e-13 Score=140.63 Aligned_cols=143 Identities=17% Similarity=0.138 Sum_probs=95.4
Q ss_pred cccChhHHHHHHHhh--cccccccCCCCCcHHHHHHHHHHhcCC--cEEEEeccccCChHHH-----------HHHHHhc
Q 037859 211 LAMETKKKEEIKKDL--KKGYLLYGPPGTGKSTMIAAMANFLNY--DVYDLELTTVQDNSEL-----------RSLLIDT 275 (504)
Q Consensus 211 ~~~~~~~k~~i~~~l--~rg~LL~GPpGtGKTsla~aiA~~l~~--~i~~l~~~~~~~~~~l-----------~~l~~~~ 275 (504)
+++.++.++.+...+ +.++||+||||||||++|+++|+.++. ++..+.+.. .+.+++ ...|...
T Consensus 24 ivGq~~~i~~l~~al~~~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~-~t~~dL~G~~~~~~~~~~g~~~~~ 102 (500)
T 3nbx_X 24 LYERSHAIRLCLLAALSGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRF-STPEEVFGPLSIQALKDEGRYERL 102 (500)
T ss_dssp CSSCHHHHHHHHHHHHHTCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTT-CCHHHHHCCBC----------CBC
T ss_pred hHHHHHHHHHHHHHHhcCCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhc-CCHHHhcCcccHHHHhhchhHHhh
Confidence 556777777777666 677999999999999999999999854 444444432 111211 1222211
Q ss_pred -----cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhc-------CccccC
Q 037859 276 -----SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFID-------GLWSAS 343 (504)
Q Consensus 276 -----~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lD-------g~~~~~ 343 (504)
+.++|||||||+.+ +..+.+.||..|+ |....
T Consensus 103 ~~g~l~~~~IL~IDEI~r~-----------------------------------~~~~q~~LL~~lee~~v~i~G~~~~- 146 (500)
T 3nbx_X 103 TSGYLPEAEIVFLDEIWKA-----------------------------------GPAILNTLLTAINERQFRNGAHVEK- 146 (500)
T ss_dssp CTTSGGGCSEEEEESGGGC-----------------------------------CHHHHHHHHHHHHSSEEECSSSEEE-
T ss_pred hccCCCcceeeeHHhHhhh-----------------------------------cHHHHHHHHHHHHHHhccCCCCcCC-
Confidence 14579999999874 1235667777774 22111
Q ss_pred CCceEEEEecCCCC---CCChhhhcCCCceeEEEecCCCH-HHHHHHHHHhcC
Q 037859 344 GEERIIVFTTNYVD---KLDPALIRRGRMDKHIEMSYCCF-EAFKVLAKNYLD 392 (504)
Q Consensus 344 ~~~~ivI~tTN~~e---~Ld~ALlRpGR~d~~I~~~~p~~-e~~~~i~~~~l~ 392 (504)
-..+++|+|||... .+.+|+++ ||..+|.+++|+. +++..|++....
T Consensus 147 ~~~~~iI~ATN~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~~ 197 (500)
T 3nbx_X 147 IPMRLLVAASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQD 197 (500)
T ss_dssp CCCCEEEEEESSCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCCC
T ss_pred cchhhhhhccccCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhcccc
Confidence 12346788888632 24469999 9999999999987 778888887653
No 77
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.40 E-value=3e-13 Score=120.49 Aligned_cols=77 Identities=19% Similarity=0.267 Sum_probs=58.6
Q ss_pred cccChhHHHHHHHhh------cccccccCCCCCcHHHHHHHHHHhc---CCcEEEEeccccCChHHHHHHHHhccCCeEE
Q 037859 211 LAMETKKKEEIKKDL------KKGYLLYGPPGTGKSTMIAAMANFL---NYDVYDLELTTVQDNSELRSLLIDTSSKSIL 281 (504)
Q Consensus 211 ~~~~~~~k~~i~~~l------~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~~~~~~l~~l~~~~~~~~Il 281 (504)
+++.....+++.+.+ ...+||+||||||||++|+++++.. +.+++ +++..+.....+...+..+ .+++|
T Consensus 3 iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~a-~~g~l 80 (145)
T 3n70_A 3 LIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNAPQLNDFIALA-QGGTL 80 (145)
T ss_dssp -CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTSSCHHHHHHHH-TTSCE
T ss_pred ceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcchhhhcHHHHc-CCcEE
Confidence 344555555555554 5679999999999999999999987 77888 9999876555555555544 56899
Q ss_pred EEeccccc
Q 037859 282 VIEDIDCS 289 (504)
Q Consensus 282 ~iDeiD~~ 289 (504)
||||||.+
T Consensus 81 ~ldei~~l 88 (145)
T 3n70_A 81 VLSHPEHL 88 (145)
T ss_dssp EEECGGGS
T ss_pred EEcChHHC
Confidence 99999986
No 78
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.36 E-value=2.6e-12 Score=128.75 Aligned_cols=131 Identities=15% Similarity=0.214 Sum_probs=99.1
Q ss_pred HHHHHHHhh----cccccccCCCCCcHHHHHHHHHHhc------CCcEEEEeccc-cCChHHHHHHHHhcc------CCe
Q 037859 217 KKEEIKKDL----KKGYLLYGPPGTGKSTMIAAMANFL------NYDVYDLELTT-VQDNSELRSLLIDTS------SKS 279 (504)
Q Consensus 217 ~k~~i~~~l----~rg~LL~GPpGtGKTsla~aiA~~l------~~~i~~l~~~~-~~~~~~l~~l~~~~~------~~~ 279 (504)
..+.+...+ ...||||||||||||++|+++|+.+ ..+++.++... -.+.+.++.++..+. ...
T Consensus 5 ~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~~~~p~~~~~k 84 (305)
T 2gno_A 5 QLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSPELYTRK 84 (305)
T ss_dssp HHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSCCSSSSSE
T ss_pred HHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHHhhccccCCce
Confidence 344444444 2359999999999999999999863 45788887654 234456777665542 357
Q ss_pred EEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccCCCceEEEEecCCCCCC
Q 037859 280 ILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERIIVFTTNYVDKL 359 (504)
Q Consensus 280 Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~~~~ivI~tTN~~e~L 359 (504)
|++|||+|.+ +....+.||..|+.. ++..++|++||.+++|
T Consensus 85 vviIdead~l-----------------------------------t~~a~naLLk~LEep----~~~t~fIl~t~~~~kl 125 (305)
T 2gno_A 85 YVIVHDCERM-----------------------------------TQQAANAFLKALEEP----PEYAVIVLNTRRWHYL 125 (305)
T ss_dssp EEEETTGGGB-----------------------------------CHHHHHHTHHHHHSC----CTTEEEEEEESCGGGS
T ss_pred EEEeccHHHh-----------------------------------CHHHHHHHHHHHhCC----CCCeEEEEEECChHhC
Confidence 9999999986 123467788888753 3557888888999999
Q ss_pred ChhhhcCCCceeEEEecCCCHHHHHHHHHHhc
Q 037859 360 DPALIRRGRMDKHIEMSYCCFEAFKVLAKNYL 391 (504)
Q Consensus 360 d~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l 391 (504)
.|+++. | .+.|+.|+.++...+++..+
T Consensus 126 ~~tI~S--R---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 126 LPTIKS--R---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp CHHHHT--T---SEEEECCCCHHHHHHHHHHH
T ss_pred hHHHHc--e---eEeCCCCCHHHHHHHHHHHh
Confidence 999999 8 78999999999888887765
No 79
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.36 E-value=1.1e-13 Score=150.98 Aligned_cols=145 Identities=20% Similarity=0.189 Sum_probs=98.1
Q ss_pred ccccChhHHHHHHHhhcc---------------cccccCCCCCcHHHHHHHHHHhcCCcEEEEec----cccCChHHHHH
Q 037859 210 TLAMETKKKEEIKKDLKK---------------GYLLYGPPGTGKSTMIAAMANFLNYDVYDLEL----TTVQDNSELRS 270 (504)
Q Consensus 210 ~~~~~~~~k~~i~~~l~r---------------g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~----~~~~~~~~l~~ 270 (504)
.+.+.+..|+.++..+.. ++||+||||||||++|+++|+.++...+.... ..+.. ..+..
T Consensus 296 ~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~-~~~~~ 374 (595)
T 3f9v_A 296 SIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTA-AVVRE 374 (595)
T ss_dssp TTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEE-ECSSG
T ss_pred hhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccc-eeeec
Confidence 456777788877766622 59999999999999999999999877665321 11100 00000
Q ss_pred HHH----------hccCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCc-
Q 037859 271 LLI----------DTSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGL- 339 (504)
Q Consensus 271 l~~----------~~~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~- 339 (504)
.+. ....++|+||||||.+- ....+.|+..|+.-
T Consensus 375 ~~~g~~~~~~G~l~~A~~gil~IDEid~l~-----------------------------------~~~q~~Ll~~le~~~ 419 (595)
T 3f9v_A 375 KGTGEYYLEAGALVLADGGIAVIDEIDKMR-----------------------------------DEDRVAIHEAMEQQT 419 (595)
T ss_dssp GGTSSCSEEECHHHHHSSSEECCTTTTCCC-----------------------------------SHHHHHHHHHHHSSS
T ss_pred cccccccccCCeeEecCCCcEEeehhhhCC-----------------------------------HhHhhhhHHHHhCCE
Confidence 010 11256899999999851 12455666666522
Q ss_pred --------cccCCCceEEEEecCCCC-------------CCChhhhcCCCcee-EEEecCCCHHHHHHHHHHhcCc
Q 037859 340 --------WSASGEERIIVFTTNYVD-------------KLDPALIRRGRMDK-HIEMSYCCFEAFKVLAKNYLDI 393 (504)
Q Consensus 340 --------~~~~~~~~ivI~tTN~~e-------------~Ld~ALlRpGR~d~-~I~~~~p~~e~~~~i~~~~l~~ 393 (504)
.........||+|||+.+ .|++||++ |||. .+..++|+.+ ...|+++.+..
T Consensus 420 i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~~ 492 (595)
T 3f9v_A 420 VSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILS--RFDLIFILKDQPGEQ-DRELANYILDV 492 (595)
T ss_dssp EEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGG--GCSCCEEECCTTHHH-HHHHHHHHHTT
T ss_pred EEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHh--hCeEEEEeCCCCCHH-HHHHHHHHHHH
Confidence 111223467999999987 89999999 9985 5566788888 88888887754
No 80
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.35 E-value=1.7e-12 Score=147.62 Aligned_cols=147 Identities=16% Similarity=0.324 Sum_probs=110.2
Q ss_pred ccccccChhHHHHHHHhh---c----------ccccccCCCCCcHHHHHHHHHHhc---CCcEEEEeccccCChH-----
Q 037859 208 FDTLAMETKKKEEIKKDL---K----------KGYLLYGPPGTGKSTMIAAMANFL---NYDVYDLELTTVQDNS----- 266 (504)
Q Consensus 208 f~~~~~~~~~k~~i~~~l---~----------rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~~~~~----- 266 (504)
++.++++...++.+...+ + ..+||+||||||||++|+++|+.+ +.+++.++++.+....
T Consensus 557 ~~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l 636 (854)
T 1qvr_A 557 HKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRL 636 (854)
T ss_dssp HHHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC
T ss_pred hcccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHH
Confidence 456788888888777766 1 258999999999999999999998 7889999998764321
Q ss_pred --------------HHHHHHHhccCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHH
Q 037859 267 --------------ELRSLLIDTSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGL 332 (504)
Q Consensus 267 --------------~l~~l~~~~~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~l 332 (504)
.+...+.. ...+||||||||.+ +..+++.|
T Consensus 637 ~g~~~~~~G~~~~g~l~~~~~~-~~~~vl~lDEi~~l-----------------------------------~~~~~~~L 680 (854)
T 1qvr_A 637 IGAPPGYVGYEEGGQLTEAVRR-RPYSVILFDEIEKA-----------------------------------HPDVFNIL 680 (854)
T ss_dssp --------------CHHHHHHH-CSSEEEEESSGGGS-----------------------------------CHHHHHHH
T ss_pred cCCCCCCcCccccchHHHHHHh-CCCeEEEEeccccc-----------------------------------CHHHHHHH
Confidence 12222221 34689999999975 23467888
Q ss_pred hhhhcCcccc--C-----CCceEEEEecCC--------------------------CCCCChhhhcCCCceeEEEecCCC
Q 037859 333 LNFIDGLWSA--S-----GEERIIVFTTNY--------------------------VDKLDPALIRRGRMDKHIEMSYCC 379 (504)
Q Consensus 333 L~~lDg~~~~--~-----~~~~ivI~tTN~--------------------------~e~Ld~ALlRpGR~d~~I~~~~p~ 379 (504)
|..||.-.-. . -.+.+||+|||. ...+.|+|+. |||..+.|.+|+
T Consensus 681 l~~l~~~~~~~~~g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~~i~~~pl~ 758 (854)
T 1qvr_A 681 LQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLT 758 (854)
T ss_dssp HHHHTTTEECCSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCBCCCCC
T ss_pred HHHhccCceECCCCCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHH--hcCeEEeCCCCC
Confidence 8888743211 0 124689999997 2357889998 999999999999
Q ss_pred HHHHHHHHHHhcC
Q 037859 380 FEAFKVLAKNYLD 392 (504)
Q Consensus 380 ~e~~~~i~~~~l~ 392 (504)
.+++..|++.++.
T Consensus 759 ~edi~~i~~~~l~ 771 (854)
T 1qvr_A 759 KEQIRQIVEIQLS 771 (854)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998874
No 81
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.33 E-value=5.7e-13 Score=118.39 Aligned_cols=75 Identities=13% Similarity=0.083 Sum_probs=55.3
Q ss_pred ccChhHHHHHHHhh------cccccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccCChHHHHHHHHhccCCeEEEEec
Q 037859 212 AMETKKKEEIKKDL------KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQDNSELRSLLIDTSSKSILVIED 285 (504)
Q Consensus 212 ~~~~~~k~~i~~~l------~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~~l~~l~~~~~~~~Il~iDe 285 (504)
++.....+++.+.+ +.++||+||||||||++|+++++..+ +++.+++..+... ....++.. ..+++|||||
T Consensus 7 iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~-~~~~~~~~-a~~~~l~lDe 83 (143)
T 3co5_A 7 LGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLID-MPMELLQK-AEGGVLYVGD 83 (143)
T ss_dssp -CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHH-CHHHHHHH-TTTSEEEEEE
T ss_pred eeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChH-hhhhHHHh-CCCCeEEEeC
Confidence 44455555555554 67799999999999999999999888 8888888765321 13444443 4578999999
Q ss_pred cccc
Q 037859 286 IDCS 289 (504)
Q Consensus 286 iD~~ 289 (504)
||.+
T Consensus 84 i~~l 87 (143)
T 3co5_A 84 IAQY 87 (143)
T ss_dssp CTTC
T ss_pred hHHC
Confidence 9986
No 82
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.33 E-value=4.8e-12 Score=126.82 Aligned_cols=144 Identities=17% Similarity=0.206 Sum_probs=93.6
Q ss_pred cccChhHHHHHHHhh------cccccccCCCCCcHHHHHHHHHHhc---CCcEEEEeccccCChHHHHHHHHh-------
Q 037859 211 LAMETKKKEEIKKDL------KKGYLLYGPPGTGKSTMIAAMANFL---NYDVYDLELTTVQDNSELRSLLID------- 274 (504)
Q Consensus 211 ~~~~~~~k~~i~~~l------~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~~~~~~l~~l~~~------- 274 (504)
+++.....+.+.+.+ +.++||+||||||||++|+++++.. +.+++.++|+.+...---..+|..
T Consensus 4 iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~lfg~~~g~~tg 83 (304)
T 1ojl_A 4 MIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESELFGHEKGAFTG 83 (304)
T ss_dssp CCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHHHTCCCSSCCC-
T ss_pred cEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHHHhcCccccccCc
Confidence 445555555555554 5679999999999999999999965 578999999877432111122211
Q ss_pred ----------ccCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCcc----
Q 037859 275 ----------TSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLW---- 340 (504)
Q Consensus 275 ----------~~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~---- 340 (504)
...+++|||||||.+- ......||..++...
T Consensus 84 ~~~~~~g~~~~a~~g~L~LDEi~~l~-----------------------------------~~~q~~Ll~~l~~~~~~~~ 128 (304)
T 1ojl_A 84 ADKRREGRFVEADGGTLFLDEIGDIS-----------------------------------PLMQVRLLRAIQEREVQRV 128 (304)
T ss_dssp --CCCCCHHHHHTTSEEEEESCTTCC-----------------------------------HHHHHHHHHHHHSSBCCBT
T ss_pred hhhhhcCHHHhcCCCEEEEeccccCC-----------------------------------HHHHHHHHHHHhcCEeeec
Confidence 1245799999999862 123455666665321
Q ss_pred ---ccCCCceEEEEecCCC-------CCCChhhhcCCCce-eEEEecCCC--HHHHHHHHHHhc
Q 037859 341 ---SASGEERIIVFTTNYV-------DKLDPALIRRGRMD-KHIEMSYCC--FEAFKVLAKNYL 391 (504)
Q Consensus 341 ---~~~~~~~ivI~tTN~~-------e~Ld~ALlRpGR~d-~~I~~~~p~--~e~~~~i~~~~l 391 (504)
......+.||+|||.. ..++++|.. ||. ..|.+|... .++...|++.|+
T Consensus 129 g~~~~~~~~~riI~atn~~l~~~v~~g~fr~~L~~--Rl~~~~i~lPpL~eR~edi~~l~~~~l 190 (304)
T 1ojl_A 129 GSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLYY--RLNVVAIEMPSLRQRREDIPLLADHFL 190 (304)
T ss_dssp TBCCCCBCCCEEEEEESSCHHHHHHHTSSCHHHHH--HHSSEEEECCCSGGGGGGHHHHHHHHH
T ss_pred CCcccccCCeEEEEecCccHHHHHHhCCcHHHHHh--hcCeeEEeccCHHHhHhhHHHHHHHHH
Confidence 0012346789999975 346778888 874 445565554 456666777776
No 83
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.14 E-value=2.4e-11 Score=111.70 Aligned_cols=82 Identities=21% Similarity=0.356 Sum_probs=54.4
Q ss_pred CccccccccChhHHHHHHHhh-----------cccccccCCCCCcHHHHHHHHHHhc----CCcEEEEeccccCChHHHH
Q 037859 205 PATFDTLAMETKKKEEIKKDL-----------KKGYLLYGPPGTGKSTMIAAMANFL----NYDVYDLELTTVQDNSELR 269 (504)
Q Consensus 205 p~~f~~~~~~~~~k~~i~~~l-----------~rg~LL~GPpGtGKTsla~aiA~~l----~~~i~~l~~~~~~~~~~l~ 269 (504)
+.+|+++.......+.+++.+ +++++|+||||||||+|++++|+.+ |..++.+++..+. ..+.
T Consensus 6 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~--~~~~ 83 (180)
T 3ec2_A 6 NANLDTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLI--FRLK 83 (180)
T ss_dssp TCCSSSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHH--HHHH
T ss_pred hCccccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHH--HHHH
Confidence 457888876433233222222 4679999999999999999999887 6666666654431 1111
Q ss_pred ---------HHHHhccCCeEEEEecccc
Q 037859 270 ---------SLLIDTSSKSILVIEDIDC 288 (504)
Q Consensus 270 ---------~l~~~~~~~~Il~iDeiD~ 288 (504)
..+.....+.+|+|||++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~llilDE~~~ 111 (180)
T 3ec2_A 84 HLMDEGKDTKFLKTVLNSPVLVLDDLGS 111 (180)
T ss_dssp HHHHHTCCSHHHHHHHTCSEEEEETCSS
T ss_pred HHhcCchHHHHHHHhcCCCEEEEeCCCC
Confidence 2233334789999999986
No 84
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.11 E-value=3.1e-10 Score=117.29 Aligned_cols=151 Identities=10% Similarity=0.125 Sum_probs=97.9
Q ss_pred cccccChhHHHHHHHhh-----------cccccc--cCCCCCcHHHHHHHHHHhc---------CCcEEEEeccccCCh-
Q 037859 209 DTLAMETKKKEEIKKDL-----------KKGYLL--YGPPGTGKSTMIAAMANFL---------NYDVYDLELTTVQDN- 265 (504)
Q Consensus 209 ~~~~~~~~~k~~i~~~l-----------~rg~LL--~GPpGtGKTsla~aiA~~l---------~~~i~~l~~~~~~~~- 265 (504)
+.+++.+...+.+...+ ++.+++ +||||||||++++++++.+ +..++.+++....+.
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLY 101 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHH
Confidence 56777777666666554 234889 9999999999999999876 456777776432111
Q ss_pred ---------------------HH----HHHHHHhccCCeEEEEecccccccccccccccccccccccccCcccccccccC
Q 037859 266 ---------------------SE----LRSLLIDTSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDG 320 (504)
Q Consensus 266 ---------------------~~----l~~l~~~~~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (504)
.. +...+.....+.||+|||+|.+...
T Consensus 102 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~---------------------------- 153 (412)
T 1w5s_A 102 TILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSS---------------------------- 153 (412)
T ss_dssp HHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSC----------------------------
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhc----------------------------
Confidence 11 2222222346889999999986310
Q ss_pred CCcchhhHHHHHhhhhcCccccCC--CceEEEEecCCCC---CCC---hhhhcCCCceeEEEecCCCHHHHHHHHHHhc
Q 037859 321 GSKKSKVTLSGLLNFIDGLWSASG--EERIIVFTTNYVD---KLD---PALIRRGRMDKHIEMSYCCFEAFKVLAKNYL 391 (504)
Q Consensus 321 ~~~~~~~~ls~lL~~lDg~~~~~~--~~~ivI~tTN~~e---~Ld---~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l 391 (504)
.......+..++..++... ..+ ..+.+|+|||.++ .++ +.+.+ |+...+.++.++.++...++...+
T Consensus 154 -~~~~~~~l~~l~~~~~~~~-~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~ 228 (412)
T 1w5s_A 154 -PRIAAEDLYTLLRVHEEIP-SRDGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRA 228 (412)
T ss_dssp -TTSCHHHHHHHHTHHHHSC-CTTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHH
T ss_pred -cCcchHHHHHHHHHHHhcc-cCCCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHH
Confidence 0011234555555554331 012 4577888888665 345 67777 665569999999999999987654
No 85
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=99.04 E-value=1.4e-09 Score=135.17 Aligned_cols=155 Identities=14% Similarity=0.281 Sum_probs=102.3
Q ss_pred cccccccChhHH---HHHHHhh---cccccccCCCCCcHHHHHHHH-HHhcCCcEEEEeccccCChHHHHHHHHhc----
Q 037859 207 TFDTLAMETKKK---EEIKKDL---KKGYLLYGPPGTGKSTMIAAM-ANFLNYDVYDLELTTVQDNSELRSLLIDT---- 275 (504)
Q Consensus 207 ~f~~~~~~~~~k---~~i~~~l---~rg~LL~GPpGtGKTsla~ai-A~~l~~~i~~l~~~~~~~~~~l~~l~~~~---- 275 (504)
+|.++..+...- ..+++.+ ++.+||+||||||||++++.. ++..+.+++.++++...+...+...+...
T Consensus 1279 ~~~~ilVPT~DTvR~~~ll~~ll~~~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tta~~l~~~~e~~~e~~ 1358 (3245)
T 3vkg_A 1279 ASPDVVIPTVDTTRHVDVLHAWLSEHRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTPELLLKTFDHHCEYK 1358 (3245)
T ss_dssp TCTTCCCCCHHHHHHHHHHHHHHHTTCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCCHHHHHHHHHHHEEEE
T ss_pred CcccceecchHHHHHHHHHHHHHHCCCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCCHHHHHHHHhhcceEE
Confidence 455555554222 2333333 788999999999999887654 44447788899999998888888777530
Q ss_pred --------------cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccc
Q 037859 276 --------------SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWS 341 (504)
Q Consensus 276 --------------~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~ 341 (504)
.++.|+||||++.-- . +..|....-..+.+++.. .|++.
T Consensus 1359 ~~~~~G~~~~p~~~Gk~~VlFiDDiNmp~-----~---------------------D~yGtQ~~ielLrqlld~-~g~yd 1411 (3245)
T 3vkg_A 1359 RTPSGETVLRPTQLGKWLVVFCDEINLPS-----T---------------------DKYGTQRVITFIRQMVEK-GGFWR 1411 (3245)
T ss_dssp ECTTSCEEEEESSTTCEEEEEETTTTCCC-----C---------------------CTTSCCHHHHHHHHHHHH-SEEEE
T ss_pred eccCCCcccCCCcCCceEEEEecccCCCC-----c---------------------cccccccHHHHHHHHHHc-CCeEE
Confidence 124799999999621 0 011222222233333321 12222
Q ss_pred cC------CCceEEEEecCCCC-----CCChhhhcCCCceeEEEecCCCHHHHHHHHHHhc
Q 037859 342 AS------GEERIIVFTTNYVD-----KLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYL 391 (504)
Q Consensus 342 ~~------~~~~ivI~tTN~~e-----~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l 391 (504)
.. -.++.+|+|+|++. .|+|+|+| || ..+.+++|+.+....|+..++
T Consensus 1412 ~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r--~F-~vi~i~~ps~esL~~If~til 1469 (3245)
T 3vkg_A 1412 TSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLR--HA-PILLVDFPSTSSLTQIYGTFN 1469 (3245)
T ss_dssp TTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHT--TC-CEEECCCCCHHHHHHHHHHHH
T ss_pred CCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHh--hc-eEEEeCCCCHHHHHHHHHHHH
Confidence 11 13467899999873 59999999 99 569999999999999987654
No 86
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.01 E-value=4.4e-10 Score=122.90 Aligned_cols=50 Identities=36% Similarity=0.413 Sum_probs=43.5
Q ss_pred CCCccccccccChhHHHHHHHhh--cccccccCCCCCcHHHHHHHHHHhcCC
Q 037859 203 EHPATFDTLAMETKKKEEIKKDL--KKGYLLYGPPGTGKSTMIAAMANFLNY 252 (504)
Q Consensus 203 ~~p~~f~~~~~~~~~k~~i~~~l--~rg~LL~GPpGtGKTsla~aiA~~l~~ 252 (504)
..|..|+.+.++...++.+...+ ...++|+||||||||+++++||+.+..
T Consensus 35 ~rp~~l~~i~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 35 VPEKLIDQVIGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp CCSSHHHHCCSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred ccccccceEECchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 45788999999998888887777 566999999999999999999998853
No 87
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=99.00 E-value=2.4e-10 Score=117.53 Aligned_cols=116 Identities=20% Similarity=0.252 Sum_probs=82.0
Q ss_pred cccccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccCChHHHHHHHHhccCCeEEEEeccccccccccccccccccccc
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQDNSELRSLLIDTSSKSILVIEDIDCSLDLTGQREKKKEKDED 305 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~~l~~l~~~~~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~ 305 (504)
++.++|+|||||||||+++++|+.++..++.++... ......+....++.++++||++.+... .++.
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~----~~~~~~lg~~~q~~~~l~dd~~~~~~~--~r~l------- 235 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPL----DRLNFELGVAIDQFLVVFEDVKGTGGE--SRDL------- 235 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCT----TTHHHHHGGGTTCSCEEETTCCCSTTT--TTTC-------
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccc----hhHHHHHHHhcchhHHHHHHHHHHHHH--Hhhc-------
Confidence 456899999999999999999999887766533221 122223455567888999999986421 1100
Q ss_pred ccccCcccccccccCCCcchhhHHHHHhhhhcCccccCCCceEEEEecCCCCCCChhhhcCCCceeEEEecC
Q 037859 306 KEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPALIRRGRMDKHIEMSY 377 (504)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~ 377 (504)
.........+.+.+.+||. +.++++|||++.+ ++++||||++..+...+
T Consensus 236 ---------------~~~~~~~~~~~l~~~ldG~-------v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 236 ---------------PSGQGINNLDNLRDYLDGS-------VKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp ---------------CCCSHHHHHHTTHHHHHCS-------SCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred ---------------cccCcchHHHHHHHHhcCC-------CeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 0001112567788888874 4578899999999 89999999998887755
No 88
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.98 E-value=3.8e-10 Score=105.56 Aligned_cols=109 Identities=20% Similarity=0.207 Sum_probs=66.6
Q ss_pred ccccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccCChHHHHHHHHhccCCeEEEEecccccccccccccccccccccc
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQDNSELRSLLIDTSSKSILVIEDIDCSLDLTGQREKKKEKDEDK 306 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~~l~~l~~~~~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~ 306 (504)
+++|||||||||||++|.++|+.++-.++.+.-+ ... -.+.......|++|||+|..+
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l~g~i~~fans--~s~----f~l~~l~~~kIiiLDEad~~~---------------- 116 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNS--TSH----FWLEPLTDTKVAMLDDATTTC---------------- 116 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCS--SSC----GGGGGGTTCSSEEEEEECHHH----------------
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEec--cch----hhhcccCCCCEEEEECCCchh----------------
Confidence 5799999999999999999999987655432111 010 011223345699999998621
Q ss_pred cccCcccccccccCCCcchhhHHHHHhhhhcCcc----ccCC-----CceEEEEecCC---CCCCChhhhcCCCceeEEE
Q 037859 307 EEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLW----SASG-----EERIIVFTTNY---VDKLDPALIRRGRMDKHIE 374 (504)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~----~~~~-----~~~ivI~tTN~---~e~Ld~ALlRpGR~d~~I~ 374 (504)
.......+-+.+||.. .... ....+|.|||. .+..-+.|.. |+ ..+.
T Consensus 117 ------------------~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~S--Ri-~~f~ 175 (212)
T 1tue_A 117 ------------------WTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLES--RI-TVFE 175 (212)
T ss_dssp ------------------HHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHT--SC-EEEE
T ss_pred ------------------HHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccccchhhhhh--hE-EEEE
Confidence 1112234556777741 1111 12368899997 3334467888 88 5777
Q ss_pred ecCC
Q 037859 375 MSYC 378 (504)
Q Consensus 375 ~~~p 378 (504)
|+.|
T Consensus 176 F~~~ 179 (212)
T 1tue_A 176 FPNA 179 (212)
T ss_dssp CCSC
T ss_pred cCCC
Confidence 7743
No 89
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.97 E-value=3.1e-10 Score=105.95 Aligned_cols=85 Identities=20% Similarity=0.293 Sum_probs=54.7
Q ss_pred CccccccccChhHHH----HHHHhh--c------ccccccCCCCCcHHHHHHHHHHhc---CCcEEEEeccccCC-----
Q 037859 205 PATFDTLAMETKKKE----EIKKDL--K------KGYLLYGPPGTGKSTMIAAMANFL---NYDVYDLELTTVQD----- 264 (504)
Q Consensus 205 p~~f~~~~~~~~~k~----~i~~~l--~------rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~~~----- 264 (504)
+.+|+++.......+ .+...+ . ++++|+||||||||++++++++++ +.+++.+++..+..
T Consensus 21 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (202)
T 2w58_A 21 RASLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHS 100 (202)
T ss_dssp CCCTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHC
T ss_pred cCCHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHHHH
Confidence 457888876553222 222332 1 789999999999999999999988 67777777654310
Q ss_pred --hHHHHHHHHhccCCeEEEEeccccc
Q 037859 265 --NSELRSLLIDTSSKSILVIEDIDCS 289 (504)
Q Consensus 265 --~~~l~~l~~~~~~~~Il~iDeiD~~ 289 (504)
...+..++.......+|+|||++..
T Consensus 101 ~~~~~~~~~~~~~~~~~~lilDei~~~ 127 (202)
T 2w58_A 101 LQDQTMNEKLDYIKKVPVLMLDDLGAE 127 (202)
T ss_dssp ---CCCHHHHHHHHHSSEEEEEEECCC
T ss_pred hccchHHHHHHHhcCCCEEEEcCCCCC
Confidence 0001122222234569999999863
No 90
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.84 E-value=1.5e-08 Score=125.20 Aligned_cols=124 Identities=19% Similarity=0.183 Sum_probs=95.0
Q ss_pred cccccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccCChHHHHHHHHhcc-CCeEEEEecccccccccccccccccccc
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQDNSELRSLLIDTS-SKSILVIEDIDCSLDLTGQREKKKEKDE 304 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~~l~~l~~~~~-~~~Il~iDeiD~~~~~~~~~~~~~~~~~ 304 (504)
..|.+++||||||||++++++|+.+|.+++.++|+...+...+.++|..+. ..+.+++|||+.+-
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~~~lg~~~~g~~~~Gaw~~~DE~nr~~-------------- 710 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDYQVLSRLLVGITQIGAWGCFDEFNRLD-------------- 710 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCHHHHHHHHHHHHHHTCEEEEETTTSSC--------------
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCChhHhhHHHHHHHhcCCEeeehhhhhcC--------------
Confidence 788999999999999999999999999999999999888888988887764 57999999999851
Q ss_pred cccccCcccccccccCCCcchhhHHHHH---h----hhh---------cCccccCCCceEEEEecC----CCCCCChhhh
Q 037859 305 DKEEKNPIEKKEKEDGGSKKSKVTLSGL---L----NFI---------DGLWSASGEERIIVFTTN----YVDKLDPALI 364 (504)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~ls~l---L----~~l---------Dg~~~~~~~~~ivI~tTN----~~e~Ld~ALl 364 (504)
..+++.+ + +.+ +|-.-.......+++|.| ....|+++|.
T Consensus 711 ---------------------~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk 769 (2695)
T 4akg_A 711 ---------------------EKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLK 769 (2695)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHH
T ss_pred ---------------------hHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHH
Confidence 1122222 1 211 111111123345788888 3456999999
Q ss_pred cCCCceeEEEecCCCHHHHHHHH
Q 037859 365 RRGRMDKHIEMSYCCFEAFKVLA 387 (504)
Q Consensus 365 RpGR~d~~I~~~~p~~e~~~~i~ 387 (504)
+ || +.|.|.+|+.+...+|.
T Consensus 770 ~--~F-r~v~m~~Pd~~~i~ei~ 789 (2695)
T 4akg_A 770 K--SF-REFSMKSPQSGTIAEMI 789 (2695)
T ss_dssp T--TE-EEEECCCCCHHHHHHHH
T ss_pred h--he-EEEEeeCCCHHHHHHHH
Confidence 9 99 89999999998877775
No 91
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.84 E-value=6.9e-09 Score=97.32 Aligned_cols=119 Identities=15% Similarity=0.163 Sum_probs=75.7
Q ss_pred cccccCCCCCcHHHHHHHHHHh--------cC-CcEEEEeccccCC---------------------hHHHHHHHH-hcc
Q 037859 228 GYLLYGPPGTGKSTMIAAMANF--------LN-YDVYDLELTTVQD---------------------NSELRSLLI-DTS 276 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~--------l~-~~i~~l~~~~~~~---------------------~~~l~~l~~-~~~ 276 (504)
-+|++|+||||||++|.+++.. .| .++|..++..+.. ...+...+. ...
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPEN 86 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGGG
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhcccc
Confidence 4789999999999999886433 34 7777666554321 022232221 123
Q ss_pred CCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccCCCceEEEEecCCC
Q 037859 277 SKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERIIVFTTNYV 356 (504)
Q Consensus 277 ~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~~~~ivI~tTN~~ 356 (504)
.++||+|||++.+++.... . .+.. .+|..+.. ....+.-||++|+++
T Consensus 87 ~~~vliIDEAq~l~~~~~~-------------------------~-~e~~----rll~~l~~---~r~~~~~iil~tq~~ 133 (199)
T 2r2a_A 87 IGSIVIVDEAQDVWPARSA-------------------------G-SKIP----ENVQWLNT---HRHQGIDIFVLTQGP 133 (199)
T ss_dssp TTCEEEETTGGGTSBCCCT-------------------------T-CCCC----HHHHGGGG---TTTTTCEEEEEESCG
T ss_pred CceEEEEEChhhhccCccc-------------------------c-chhH----HHHHHHHh---cCcCCeEEEEECCCH
Confidence 5899999999997531100 0 0011 23333332 223446788889889
Q ss_pred CCCChhhhcCCCceeEEEecCCCHH
Q 037859 357 DKLDPALIRRGRMDKHIEMSYCCFE 381 (504)
Q Consensus 357 e~Ld~ALlRpGR~d~~I~~~~p~~e 381 (504)
+.||.+|.+ |++.++++..|...
T Consensus 134 ~~l~~~lr~--ri~~~~~l~~~~~~ 156 (199)
T 2r2a_A 134 KLLDQNLRT--LVRKHYHIASNKMG 156 (199)
T ss_dssp GGBCHHHHT--TEEEEEEEEECSSC
T ss_pred HHHhHHHHH--HhheEEEEcCcccC
Confidence 999999988 99999999876443
No 92
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.80 E-value=1.8e-09 Score=108.25 Aligned_cols=84 Identities=24% Similarity=0.396 Sum_probs=52.6
Q ss_pred CccccccccChhHHH----HHHHhh-------cccccccCCCCCcHHHHHHHHHHhcC----CcEEEEeccccC------
Q 037859 205 PATFDTLAMETKKKE----EIKKDL-------KKGYLLYGPPGTGKSTMIAAMANFLN----YDVYDLELTTVQ------ 263 (504)
Q Consensus 205 p~~f~~~~~~~~~k~----~i~~~l-------~rg~LL~GPpGtGKTsla~aiA~~l~----~~i~~l~~~~~~------ 263 (504)
+.+|+++......+. .+.+.+ +++++||||||||||+|+.++|+++. .++..+.+..+.
T Consensus 120 ~~tfd~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~ 199 (308)
T 2qgz_A 120 HIHLSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNA 199 (308)
T ss_dssp SCCGGGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCC
T ss_pred hCCHhhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHH
Confidence 467888887552222 222222 36799999999999999999998664 777777654320
Q ss_pred -ChHHHHHHHHhccCCeEEEEecccc
Q 037859 264 -DNSELRSLLIDTSSKSILVIEDIDC 288 (504)
Q Consensus 264 -~~~~l~~l~~~~~~~~Il~iDeiD~ 288 (504)
....+...+.......+|+||||+.
T Consensus 200 ~~~~~~~~~~~~~~~~~lLiiDdig~ 225 (308)
T 2qgz_A 200 ISNGSVKEEIDAVKNVPVLILDDIGA 225 (308)
T ss_dssp CC----CCTTHHHHTSSEEEEETCCC
T ss_pred hccchHHHHHHHhcCCCEEEEcCCCC
Confidence 0111111122223567999999976
No 93
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.76 E-value=5.7e-09 Score=93.28 Aligned_cols=57 Identities=12% Similarity=0.191 Sum_probs=45.4
Q ss_pred cccccccCCCCCcHHHHHHHHHHhc---CCcEEEEeccccCChHHHHHHHHhccCCeEEEEeccccc
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFL---NYDVYDLELTTVQDNSELRSLLIDTSSKSILVIEDIDCS 289 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~~~~~~l~~l~~~~~~~~Il~iDeiD~~ 289 (504)
...++|+||+|+|||+|++++++.+ |..++.++...+... .-..++.||+|||++.+
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~-------~~~~~~~lLilDE~~~~ 95 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT-------DAAFEAEYLAVDQVEKL 95 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC-------GGGGGCSEEEEESTTCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH-------HHHhCCCEEEEeCcccc
Confidence 4568999999999999999999988 777888877766433 11346789999999874
No 94
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.67 E-value=1.3e-07 Score=95.13 Aligned_cols=52 Identities=31% Similarity=0.305 Sum_probs=42.7
Q ss_pred cccccChhHHHHHHHhhc-ccccccCCCCCcHHHHHHHHHHhcCCcEEEEeccc
Q 037859 209 DTLAMETKKKEEIKKDLK-KGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTT 261 (504)
Q Consensus 209 ~~~~~~~~~k~~i~~~l~-rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~ 261 (504)
+.+.+.+...+.+.+ +. +.++++||+|+|||+|++.+++.++.+.+.+++..
T Consensus 13 ~~~~gR~~el~~L~~-l~~~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~ 65 (357)
T 2fna_A 13 KDFFDREKEIEKLKG-LRAPITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRK 65 (357)
T ss_dssp GGSCCCHHHHHHHHH-TCSSEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred HHhcChHHHHHHHHH-hcCCcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchh
Confidence 456777777888888 73 46889999999999999999999887777777654
No 95
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.64 E-value=9e-09 Score=102.85 Aligned_cols=110 Identities=14% Similarity=0.171 Sum_probs=63.2
Q ss_pred ccccccCCCCCcHHHHHHHHHHhcCCcEEEEec------cccC-ChHHH-HHHHHhcc-CCeEEEEeccccccccccccc
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANFLNYDVYDLEL------TTVQ-DNSEL-RSLLIDTS-SKSILVIEDIDCSLDLTGQRE 297 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~------~~~~-~~~~l-~~l~~~~~-~~~Il~iDeiD~~~~~~~~~~ 297 (504)
+.+||+||||||||+|+.++|...+.++.++++ .... +...+ ..+..... .+ +||||+|+.+......
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~-LLVIDsI~aL~~~~~~-- 200 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR-VIVIDSLKNVIGAAGG-- 200 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS-EEEEECCTTTC-------
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC-EEEEeccccccccccc--
Confidence 447999999999999999999876655444444 1111 22222 22222222 23 9999999986321100
Q ss_pred ccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccCCCceEEEEecCCCCCCChhh
Q 037859 298 KKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERIIVFTTNYVDKLDPAL 363 (504)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~~~~ivI~tTN~~e~Ld~AL 363 (504)
.+........+.++|..|+++... .++.+|++|| +...|+++
T Consensus 201 ---------------------~s~~G~v~~~lrqlL~~L~~~~k~--~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 201 ---------------------NTTSGGISRGAFDLLSDIGAMAAS--RGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp ---------------------------CCHHHHHHHHHHHHHHHH--HTCEEEEECC-CSSCSSSH
T ss_pred ---------------------ccccchHHHHHHHHHHHHHHHHhh--CCCEEEEEeC-CcccchhH
Confidence 000111234567777777766332 3467888888 55667664
No 96
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.63 E-value=6e-08 Score=94.55 Aligned_cols=56 Identities=21% Similarity=0.290 Sum_probs=38.4
Q ss_pred cccccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccCChHHHHHHHHhccCCeEEEEecccc
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQDNSELRSLLIDTSSKSILVIEDIDC 288 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~~l~~l~~~~~~~~Il~iDeiD~ 288 (504)
+++++||||||||||+++.|||+.+..-. .++.+.- ...|.....+.|++.||...
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~~l~G-~vn~~~~------~f~l~~~~~k~i~l~Ee~~~ 159 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTVPFYG-CVNWTNE------NFPFNDCVDKMVIWWEEGKM 159 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSSCEE-ECCTTCS------SCTTGGGSSCSEEEECSCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhhcccc-eeecccc------ccccccccccEEEEeccccc
Confidence 34799999999999999999999875522 2232211 11244456677888888765
No 97
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.59 E-value=2.4e-08 Score=104.21 Aligned_cols=130 Identities=15% Similarity=0.131 Sum_probs=83.1
Q ss_pred cccChhHHHHHHHhhcc---------cccccCCCCCcHHHHHHHH-HHhcCCcEEEEeccccCChHHHHHH------H--
Q 037859 211 LAMETKKKEEIKKDLKK---------GYLLYGPPGTGKSTMIAAM-ANFLNYDVYDLELTTVQDNSELRSL------L-- 272 (504)
Q Consensus 211 ~~~~~~~k~~i~~~l~r---------g~LL~GPpGtGKTsla~ai-A~~l~~~i~~l~~~~~~~~~~l~~l------~-- 272 (504)
+.+++..|+.++-.+-. .+||.|+||| ||++++++ ++.+...+|..... .+...|... +
T Consensus 215 I~G~e~vK~aLll~L~GG~~k~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~--ss~~gLt~s~r~~tG~~~ 291 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCVGKNSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRR--TELTDLTAVLKEDRGWAL 291 (506)
T ss_dssp STTCHHHHHHHHHHHTTCCSSGGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGG--CCHHHHSEEEEESSSEEE
T ss_pred cCCCHHHHHHHHHHHcCCccccCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCC--CCccCceEEEEcCCCccc
Confidence 56778888888877722 4999999999 99999999 77766655542211 111111100 0
Q ss_pred ----HhccCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhc-------Cccc
Q 037859 273 ----IDTSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFID-------GLWS 341 (504)
Q Consensus 273 ----~~~~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lD-------g~~~ 341 (504)
.......|+|||||+.+ ...+.+.|+..|+ |.
T Consensus 292 ~~G~l~LAdgGvl~lDEIn~~-----------------------------------~~~~qsaLlEaMEe~~VtI~G~-- 334 (506)
T 3f8t_A 292 RAGAAVLADGGILAVDHLEGA-----------------------------------PEPHRWALMEAMDKGTVTVDGI-- 334 (506)
T ss_dssp EECHHHHTTTSEEEEECCTTC-----------------------------------CHHHHHHHHHHHHHSEEEETTE--
T ss_pred CCCeeEEcCCCeeehHhhhhC-----------------------------------CHHHHHHHHHHHhCCcEEECCE--
Confidence 11235789999999985 2346667777665 22
Q ss_pred cCCCceEEEEecCCCC-----------CCChhhhcCCCceeEEE-ecCCCHHH
Q 037859 342 ASGEERIIVFTTNYVD-----------KLDPALIRRGRMDKHIE-MSYCCFEA 382 (504)
Q Consensus 342 ~~~~~~ivI~tTN~~e-----------~Ld~ALlRpGR~d~~I~-~~~p~~e~ 382 (504)
.-.....||+|+|..+ .|+++++. |||+.+. +++|+.+.
T Consensus 335 ~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~pd~e~ 385 (506)
T 3f8t_A 335 ALNARCAVLAAINPGEQWPSDPPIARIDLDQDFLS--HFDLIAFLGVDPRPGE 385 (506)
T ss_dssp EEECCCEEEEEECCCC--CCSCGGGGCCSCHHHHT--TCSEEEETTC------
T ss_pred EcCCCeEEEEEeCcccccCCCCCccccCCChHHhh--heeeEEEecCCCChhH
Confidence 1123467999999876 78999999 9997654 57776554
No 98
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.56 E-value=9.2e-07 Score=88.62 Aligned_cols=50 Identities=18% Similarity=0.197 Sum_probs=39.6
Q ss_pred cccccChhHHHHHHHhh--cccccccCCCCCcHHHHHHHHHHhcCCcEEEEecc
Q 037859 209 DTLAMETKKKEEIKKDL--KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELT 260 (504)
Q Consensus 209 ~~~~~~~~~k~~i~~~l--~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~ 260 (504)
+.+.+.+...+.+.+.+ .+.++++||+|+|||+|++.+++..+ .+.+++.
T Consensus 12 ~~~~gR~~el~~L~~~l~~~~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~ 63 (350)
T 2qen_A 12 EDIFDREEESRKLEESLENYPLTLLLGIRRVGKSSLLRAFLNERP--GILIDCR 63 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHH
T ss_pred HhcCChHHHHHHHHHHHhcCCeEEEECCCcCCHHHHHHHHHHHcC--cEEEEee
Confidence 45677777777777766 35689999999999999999999876 5566553
No 99
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.51 E-value=7.8e-08 Score=114.39 Aligned_cols=110 Identities=13% Similarity=0.170 Sum_probs=70.0
Q ss_pred ccc--ccccCCCCCcHHHHHHHHHHhc---CCcEEEEeccccC----------------------ChHHHHHHHHh--cc
Q 037859 226 KKG--YLLYGPPGTGKSTMIAAMANFL---NYDVYDLELTTVQ----------------------DNSELRSLLID--TS 276 (504)
Q Consensus 226 ~rg--~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~~----------------------~~~~l~~l~~~--~~ 276 (504)
|+| +|+|||||||||+||+++|.+. +-+..+++..... +...|+-++.. ..
T Consensus 1080 p~g~~~l~~G~~g~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~ 1159 (1706)
T 3cmw_A 1080 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSG 1159 (1706)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEEcCCCCChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhc
Confidence 577 9999999999999999998765 4455555544311 12345444432 34
Q ss_pred CCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccCCCceEEEEecCCC
Q 037859 277 SKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERIIVFTTNYV 356 (504)
Q Consensus 277 ~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~~~~ivI~tTN~~ 356 (504)
.+|+|++|++|++++..+.+.. .+........+.++++|..||++.... .++|| +||+.
T Consensus 1160 ~~~~i~~d~~~al~~~~~~~g~------------------~~~~~~~~~~r~~~q~l~~~~~~~~~~--~v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1160 AVDVIVVDSVAALTPKAEIEGE------------------IGDSHMGLAARMMSQAMRKLAGNLKQS--NTLLI-FINQI 1218 (1706)
T ss_dssp CCSEEEESCGGGCCCHHHHHSC------------------TTCCCTTHHHHHHHHHHHHHHHHHHHT--TCEEE-EEECE
T ss_pred CCeEEEeCchHhcCcccccccc------------------cccccccHHHHHHHHHHHHHHhhhccC--CeEEE-Eeccc
Confidence 7999999999998643221100 000011334557999999999975433 24444 77765
No 100
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.50 E-value=6.5e-07 Score=92.40 Aligned_cols=145 Identities=20% Similarity=0.207 Sum_probs=90.4
Q ss_pred cccChhHHHHHHHhh------cccccccCCCCCcHHHHHHHHHHhcC---CcEEEEeccccCChHHHHHHHHh-------
Q 037859 211 LAMETKKKEEIKKDL------KKGYLLYGPPGTGKSTMIAAMANFLN---YDVYDLELTTVQDNSELRSLLID------- 274 (504)
Q Consensus 211 ~~~~~~~k~~i~~~l------~rg~LL~GPpGtGKTsla~aiA~~l~---~~i~~l~~~~~~~~~~l~~l~~~------- 274 (504)
+++.....+++.+.+ ...+|++|++||||+++|+++..... .+++.++|+.+...---..+|..
T Consensus 139 ~ig~s~~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~~~g~~tg 218 (387)
T 1ny5_A 139 YVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTG 218 (387)
T ss_dssp CCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBCTTSSTT
T ss_pred hhhccHHhhHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCCCCCCCCC
Confidence 344444445555444 45689999999999999999988764 68999999987533222333321
Q ss_pred ----------ccCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCcc----
Q 037859 275 ----------TSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLW---- 340 (504)
Q Consensus 275 ----------~~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~---- 340 (504)
.....+||||||+.+ +......||..|+.-.
T Consensus 219 a~~~~~g~~~~a~~gtlfldei~~l-----------------------------------~~~~q~~Ll~~l~~~~~~~~ 263 (387)
T 1ny5_A 219 AVSSKEGFFELADGGTLFLDEIGEL-----------------------------------SLEAQAKLLRVIESGKFYRL 263 (387)
T ss_dssp CCSCBCCHHHHTTTSEEEEESGGGC-----------------------------------CHHHHHHHHHHHHHSEECCB
T ss_pred cccccCCceeeCCCcEEEEcChhhC-----------------------------------CHHHHHHHHHHHhcCcEEeC
Confidence 134579999999986 1234555666554210
Q ss_pred ---ccCCCceEEEEecCCC-------CCCChhhhcCCCce-eEEEecCC--CHHHHHHHHHHhcC
Q 037859 341 ---SASGEERIIVFTTNYV-------DKLDPALIRRGRMD-KHIEMSYC--CFEAFKVLAKNYLD 392 (504)
Q Consensus 341 ---~~~~~~~ivI~tTN~~-------e~Ld~ALlRpGR~d-~~I~~~~p--~~e~~~~i~~~~l~ 392 (504)
......+.+|+|||.. ..+.+.|.- |+. ..|++|.. ..++...|+..|+.
T Consensus 264 g~~~~~~~~~rii~at~~~l~~~~~~g~fr~dl~~--rl~~~~i~lPpLreR~~Di~~l~~~~l~ 326 (387)
T 1ny5_A 264 GGRKEIEVNVRILAATNRNIKELVKEGKFREDLYY--RLGVIEIEIPPLRERKEDIIPLANHFLK 326 (387)
T ss_dssp TCCSBEECCCEEEEEESSCHHHHHHTTSSCHHHHH--HHTTEEEECCCGGGCHHHHHHHHHHHHH
T ss_pred CCCceeeccEEEEEeCCCCHHHHHHcCCccHHHHH--hhcCCeecCCcchhccccHHHHHHHHHH
Confidence 0011235688999863 344555555 553 44555554 24777778877763
No 101
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.48 E-value=4.7e-07 Score=112.91 Aligned_cols=129 Identities=17% Similarity=0.118 Sum_probs=95.3
Q ss_pred cccccccCCCCCcHHHHHHHHHHhcCCcEEEEeccccCChHHHHHHHHhcc-CCeEEEEecccccccccccccccccccc
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTVQDNSELRSLLIDTS-SKSILVIEDIDCSLDLTGQREKKKEKDE 304 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~~l~~l~~~~~-~~~Il~iDeiD~~~~~~~~~~~~~~~~~ 304 (504)
..|..+.||+|||||.+++++|+.+|.+++.++|+.-.+...+.++|..+. ..+..++|||+.+-
T Consensus 604 ~~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~~~~g~i~~G~~~~GaW~cfDEfNrl~-------------- 669 (3245)
T 3vkg_A 604 RMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDLQAMSRIFVGLCQCGAWGCFDEFNRLE-------------- 669 (3245)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHHHTCEEEEETTTSSC--------------
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHhhHhhcCcEEEehhhhcCC--------------
Confidence 567789999999999999999999999999999998888888888887764 58899999999851
Q ss_pred cccccCcccccccccCCCcchhhHHHHHhhhh----------------c-CccccCCCceEEEEecCC----CCCCChhh
Q 037859 305 DKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFI----------------D-GLWSASGEERIIVFTTNY----VDKLDPAL 363 (504)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~l----------------D-g~~~~~~~~~ivI~tTN~----~e~Ld~AL 363 (504)
..++|.+...| + |-.-.-....-+|+|.|. ...||++|
T Consensus 670 ---------------------~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nL 728 (3245)
T 3vkg_A 670 ---------------------ERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNL 728 (3245)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHH
T ss_pred ---------------------HHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHH
Confidence 11222222111 1 211011233567888883 45799999
Q ss_pred hcCCCceeEEEecCCCHHHHHHHHHHhcC
Q 037859 364 IRRGRMDKHIEMSYCCFEAFKVLAKNYLD 392 (504)
Q Consensus 364 lRpGR~d~~I~~~~p~~e~~~~i~~~~l~ 392 (504)
.. || +.|.|..|+.+...+|.-.-.+
T Consensus 729 k~--lF-r~v~m~~Pd~~~i~ei~L~s~G 754 (3245)
T 3vkg_A 729 KK--LF-RSMAMIKPDREMIAQVMLYSQG 754 (3245)
T ss_dssp HT--TE-EEEECCSCCHHHHHHHHHHTTT
T ss_pred Hh--hc-EEEEEeCCCHHHHHHHHHHHcc
Confidence 99 99 7899999999888777544333
No 102
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.45 E-value=9.5e-07 Score=90.56 Aligned_cols=151 Identities=15% Similarity=0.162 Sum_probs=93.2
Q ss_pred cccccccCCCCCcHHHHHHHHHHhcCCc--EEEEeccccCChHHHHHHHHh-----------------ccCCeEEEEecc
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFLNYD--VYDLELTTVQDNSELRSLLID-----------------TSSKSILVIEDI 286 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l~~~--i~~l~~~~~~~~~~l~~l~~~-----------------~~~~~Il~iDei 286 (504)
...+|++|++||||+.+|+++....+.. ++.++|..+....--..+|.. ......||||||
T Consensus 152 ~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg~~~g~~tga~~~~~g~~~~a~~gtlfldei 231 (368)
T 3dzd_A 152 KAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGHEKGAFTGALTRKKGKLELADQGTLFLDEV 231 (368)
T ss_dssp CSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHHHEECSCSSSSCCCCEECHHHHTTTSEEEEETG
T ss_pred chhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHhcCccccccCCcccccCChHhhcCCCeEEecCh
Confidence 4569999999999999999998877544 999999988644333344422 134578999999
Q ss_pred cccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCcc-ccCC------CceEEEEecCCC---
Q 037859 287 DCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLW-SASG------EERIIVFTTNYV--- 356 (504)
Q Consensus 287 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~-~~~~------~~~ivI~tTN~~--- 356 (504)
+.+ +......||..|+.-. ...+ -.+-+|+|||..
T Consensus 232 ~~l-----------------------------------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~ 276 (368)
T 3dzd_A 232 GEL-----------------------------------DQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLEE 276 (368)
T ss_dssp GGS-----------------------------------CHHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCHHH
T ss_pred hhC-----------------------------------CHHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCHHH
Confidence 986 2235556666664211 0111 134588888843
Q ss_pred ----CCCChhhhcCCCce-eEEEecCCCH--HHHHHHHHHhcCcCCcchHHHHhcCcc-CCCCCHHHHHHhh
Q 037859 357 ----DKLDPALIRRGRMD-KHIEMSYCCF--EAFKVLAKNYLDIDSHELYAVIESMPA-ETNMTPADVAENL 420 (504)
Q Consensus 357 ----e~Ld~ALlRpGR~d-~~I~~~~p~~--e~~~~i~~~~l~~~~~~~~~~i~~l~~-~~~~s~a~i~~~l 420 (504)
..+.+.|.. |+. ..|++|.... ++...|+.+|+... . ...-. ..++|++-+..+.
T Consensus 277 ~v~~g~fr~dL~~--rl~~~~i~lPpLreR~~Di~~l~~~~l~~~----~---~~~~~~~~~~~~~a~~~L~ 339 (368)
T 3dzd_A 277 EIKKGNFREDLYY--RLSVFQIYLPPLRERGKDVILLAEYFLKKF----A---KEYKKNCFELSEETKEYLM 339 (368)
T ss_dssp HHHTTSSCHHHHH--HHTSEEEECCCGGGSTTHHHHHHHHHHHHH----H---HHTTCCCCCBCHHHHHHHH
T ss_pred HHHcCCccHHHHH--HhCCeEEeCCChhhchhhHHHHHHHHHHHH----H---HHcCCCCCCcCHHHHHHHH
Confidence 234445555 443 3567776544 67778888876321 1 11111 2468887765443
No 103
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.23 E-value=5.2e-06 Score=83.84 Aligned_cols=128 Identities=13% Similarity=0.136 Sum_probs=83.1
Q ss_pred HHHHhhcccccccCCCCCcHHHHHHHHHHhc---CC-cEEEEeccccCChHHHHHHHHhc------cCCeEEEEecccc-
Q 037859 220 EIKKDLKKGYLLYGPPGTGKSTMIAAMANFL---NY-DVYDLELTTVQDNSELRSLLIDT------SSKSILVIEDIDC- 288 (504)
Q Consensus 220 ~i~~~l~rg~LL~GPpGtGKTsla~aiA~~l---~~-~i~~l~~~~~~~~~~l~~l~~~~------~~~~Il~iDeiD~- 288 (504)
.|...++..||||||+|+||++.++++++.+ +. +...+.... +.+++.++..+ ..+-|++|||+|.
T Consensus 12 ~l~~~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~plf~~~kvvii~~~~~k 88 (343)
T 1jr3_D 12 QLNEGLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDP---NTDWNAIFSLCQAMSLFASRQTLLLLLPENG 88 (343)
T ss_dssp HHHHCCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCT---TCCHHHHHHHHHHHHHCCSCEEEEEECCSSC
T ss_pred HHhcCCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecC---CCCHHHHHHHhcCcCCccCCeEEEEECCCCC
Confidence 3333446789999999999999999998865 33 222222222 23344444332 3678999999987
Q ss_pred cccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccCCCceEEEEecCCC------CCCChh
Q 037859 289 SLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERIIVFTTNYV------DKLDPA 362 (504)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~~~~ivI~tTN~~------e~Ld~A 362 (504)
+- ....+.|+..++.. .+..++|++|+.+ .++.++
T Consensus 89 l~-----------------------------------~~~~~aLl~~le~p----~~~~~~il~~~~~~~~~~~~k~~~~ 129 (343)
T 1jr3_D 89 PN-----------------------------------AAINEQLLTLTGLL----HDDLLLIVRGNKLSKAQENAAWFTA 129 (343)
T ss_dssp CC-----------------------------------TTHHHHHHHHHTTC----BTTEEEEEEESCCCTTTTTSHHHHH
T ss_pred CC-----------------------------------hHHHHHHHHHHhcC----CCCeEEEEEcCCCChhhHhhHHHHH
Confidence 41 12456677777653 2345666655543 346678
Q ss_pred hhcCCCceeEEEecCCCHHHHHHHHHHhcC
Q 037859 363 LIRRGRMDKHIEMSYCCFEAFKVLAKNYLD 392 (504)
Q Consensus 363 LlRpGR~d~~I~~~~p~~e~~~~i~~~~l~ 392 (504)
+.. |. ..+.+..++.++....++..+.
T Consensus 130 i~s--r~-~~~~~~~l~~~~l~~~l~~~~~ 156 (343)
T 1jr3_D 130 LAN--RS-VQVTCQTPEQAQLPRWVAARAK 156 (343)
T ss_dssp HTT--TC-EEEEECCCCTTHHHHHHHHHHH
T ss_pred HHh--Cc-eEEEeeCCCHHHHHHHHHHHHH
Confidence 888 66 5799999988888877776653
No 104
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.16 E-value=2.2e-06 Score=103.32 Aligned_cols=109 Identities=11% Similarity=0.135 Sum_probs=66.9
Q ss_pred cccccccCCCCCcHHHHHHHHHHhc---CCcEEEEeccccC---------------------ChHHHHHHHHh---ccCC
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFL---NYDVYDLELTTVQ---------------------DNSELRSLLID---TSSK 278 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~~---------------------~~~~l~~l~~~---~~~~ 278 (504)
+++++||||||||||+||.++|.+. |..+.+++..... ..+++.+.+.. ...+
T Consensus 1427 g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~~~~ 1506 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAV 1506 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHhcCCC
Confidence 5679999999999999999997764 5566666655321 12233333332 3689
Q ss_pred eEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccCCCceEEEEecCC
Q 037859 279 SILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERIIVFTTNY 355 (504)
Q Consensus 279 ~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~~~~ivI~tTN~ 355 (504)
++||||+++.+++....+.. .++.......+.++++|..|++..... .++|.+||.
T Consensus 1507 ~lVVIDsi~al~p~~~~~g~------------------~~~~~~~~~~R~lsqlL~~L~~~~~~~---~v~VI~tNq 1562 (2050)
T 3cmu_A 1507 DVIVVDSVAALTPKAEIEGE------------------IGDSHMGLAARMMSQAMRKLAGNLKQS---NTLLIFINQ 1562 (2050)
T ss_dssp SEEEESCGGGCCCHHHHHSC------------------TTCCCTTHHHHHHHHHHHHHHHHHHTT---TCEEEEEEC
T ss_pred CEEEEcChhHhccccccccc------------------ccccccchHHHHHHHHHHHHHHHHHhC---CcEEEEEcc
Confidence 99999999987532111100 000011113457889999998875433 255556664
No 105
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.05 E-value=1.4e-05 Score=73.29 Aligned_cols=26 Identities=27% Similarity=0.572 Sum_probs=22.6
Q ss_pred ccccCCCCCcHHHHHHHHHHhcCCcE
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLNYDV 254 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~~~i 254 (504)
+.|.||+|+|||||++.|++.++..+
T Consensus 3 i~l~G~nGsGKTTLl~~l~g~l~i~~ 28 (178)
T 1ye8_A 3 IIITGEPGVGKTTLVKKIVERLGKRA 28 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcC
Confidence 67899999999999999999876443
No 106
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.73 E-value=0.00023 Score=76.86 Aligned_cols=41 Identities=22% Similarity=0.216 Sum_probs=33.0
Q ss_pred ccccccChhHHHHHHHhh------cccccccCCCCCcHHHHHHHHHH
Q 037859 208 FDTLAMETKKKEEIKKDL------KKGYLLYGPPGTGKSTMIAAMAN 248 (504)
Q Consensus 208 f~~~~~~~~~k~~i~~~l------~rg~LL~GPpGtGKTsla~aiA~ 248 (504)
-..+++.+...+.|.+.+ .+-++++||+|+|||+||..+++
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred CCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHh
Confidence 345678888888888777 34478999999999999999865
No 107
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.57 E-value=2.4e-05 Score=71.23 Aligned_cols=33 Identities=24% Similarity=0.382 Sum_probs=29.3
Q ss_pred cccccccCCCCCcHHHHHHHHHHhcCCcEEEEe
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLE 258 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~ 258 (504)
++.++|.||||||||++++.+|..+++++++.+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d 37 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSD 37 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 356889999999999999999999999988653
No 108
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.54 E-value=4.6e-05 Score=68.85 Aligned_cols=33 Identities=18% Similarity=0.305 Sum_probs=29.1
Q ss_pred ccccccCCCCCcHHHHHHHHHHhcCCcEEEEec
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANFLNYDVYDLEL 259 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~ 259 (504)
+-++|.||||+||||+++++|..++.+++.++.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~ 36 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGV 36 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEecc
Confidence 457899999999999999999999988887654
No 109
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.53 E-value=0.0003 Score=65.41 Aligned_cols=33 Identities=21% Similarity=0.300 Sum_probs=27.6
Q ss_pred ccccCCCCCcHHHHHHHHHHhcCCcEEEEeccc
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLNYDVYDLELTT 261 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~ 261 (504)
++|+||||+|||+++..+|...+.+++.++...
T Consensus 23 ~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 23 TQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 789999999999999999985566777776544
No 110
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.45 E-value=5.5e-05 Score=69.61 Aligned_cols=30 Identities=20% Similarity=0.260 Sum_probs=22.2
Q ss_pred cccccCCCCCcHHHHHHHHHHhc---CCcEEEE
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFL---NYDVYDL 257 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l---~~~i~~l 257 (504)
-++++||||+|||+++..++..+ +.+++.+
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 36789999999999987666543 5555443
No 111
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.45 E-value=4.4e-05 Score=70.72 Aligned_cols=32 Identities=38% Similarity=0.427 Sum_probs=28.5
Q ss_pred ccccccCCCCCcHHHHHHHHHHhcCCcEEEEe
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANFLNYDVYDLE 258 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~ 258 (504)
+.++|.|||||||||+++++|..+++++++.+
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d 57 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence 45889999999999999999999999887653
No 112
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.43 E-value=0.0003 Score=76.12 Aligned_cols=50 Identities=24% Similarity=0.254 Sum_probs=38.0
Q ss_pred ccccChhHHHHHHHhhcc-cccccCCCCCcHHHHHHHHHHhc---CCcEEEEec
Q 037859 210 TLAMETKKKEEIKKDLKK-GYLLYGPPGTGKSTMIAAMANFL---NYDVYDLEL 259 (504)
Q Consensus 210 ~~~~~~~~k~~i~~~l~r-g~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~ 259 (504)
...+.+.+++.+...+.. -+++.||||||||+++.+++..+ +.++..+..
T Consensus 187 ~~~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~Ap 240 (574)
T 3e1s_A 187 RKGLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAP 240 (574)
T ss_dssp TTTCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred cCCCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecC
Confidence 445778888888777644 47789999999999999998755 666665533
No 113
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.38 E-value=7.3e-05 Score=66.83 Aligned_cols=31 Identities=29% Similarity=0.291 Sum_probs=27.6
Q ss_pred cccccCCCCCcHHHHHHHHHHhcCCcEEEEe
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFLNYDVYDLE 258 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~ 258 (504)
-++|.||||+||||+++.+|..+++++++.+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 3678999999999999999999998887655
No 114
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.37 E-value=6.1e-05 Score=68.10 Aligned_cols=30 Identities=33% Similarity=0.413 Sum_probs=27.1
Q ss_pred cccccCCCCCcHHHHHHHHHHhcCCcEEEE
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFLNYDVYDL 257 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l 257 (504)
.++|.||||+|||+++++||..+++++++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~ 35 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLDS 35 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 478999999999999999999999887764
No 115
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.37 E-value=0.0012 Score=77.13 Aligned_cols=57 Identities=21% Similarity=0.216 Sum_probs=41.6
Q ss_pred CccccccccChhHHHHHHHhh------cccccccCCCCCcHHHHHHHHHHh-------cCCcEEEEeccc
Q 037859 205 PATFDTLAMETKKKEEIKKDL------KKGYLLYGPPGTGKSTMIAAMANF-------LNYDVYDLELTT 261 (504)
Q Consensus 205 p~~f~~~~~~~~~k~~i~~~l------~rg~LL~GPpGtGKTsla~aiA~~-------l~~~i~~l~~~~ 261 (504)
|.....+++.++..++|.+.+ .+-+.|+|++|+|||+||+.+++. +...++.++++.
T Consensus 120 p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~ 189 (1249)
T 3sfz_A 120 PQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGK 189 (1249)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCS
T ss_pred CCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECC
Confidence 444556788888888888877 334779999999999999998875 222355665544
No 116
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.35 E-value=7.2e-05 Score=67.88 Aligned_cols=32 Identities=28% Similarity=0.413 Sum_probs=28.2
Q ss_pred cccccccCCCCCcHHHHHHHHHHhcCCcEEEE
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDL 257 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l 257 (504)
++.++|+||||+|||++++++|..+++.++..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 35689999999999999999999999887754
No 117
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.33 E-value=7.9e-05 Score=67.77 Aligned_cols=31 Identities=35% Similarity=0.514 Sum_probs=27.9
Q ss_pred cccccCCCCCcHHHHHHHHHHhcCCcEEEEe
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFLNYDVYDLE 258 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~ 258 (504)
-++|.|+||+|||++++.+|..+|+++++.+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~D 34 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLDTD 34 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEeCc
Confidence 4789999999999999999999999987653
No 118
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.33 E-value=7.8e-05 Score=66.84 Aligned_cols=32 Identities=28% Similarity=0.459 Sum_probs=28.5
Q ss_pred ccccccCCCCCcHHHHHHHHHHhcCCcEEEEe
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANFLNYDVYDLE 258 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~ 258 (504)
..++|.|+||||||++++.+|..+|+++++.+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~D 39 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDTD 39 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 35789999999999999999999999988753
No 119
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.31 E-value=0.00012 Score=65.67 Aligned_cols=30 Identities=43% Similarity=0.713 Sum_probs=26.5
Q ss_pred ccccccCCCCCcHHHHHHHHHHhcCCcEEE
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANFLNYDVYD 256 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~l~~~i~~ 256 (504)
.-+.|.|||||||||+++.+|..++.++++
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~id 34 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 458899999999999999999999986654
No 120
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.30 E-value=0.00042 Score=72.78 Aligned_cols=57 Identities=23% Similarity=0.259 Sum_probs=36.8
Q ss_pred ecCCCccccccccChhHHHHHHHhh------cccccccCCCCCcHHHHHHHHHHhc---CC-cEEEEec
Q 037859 201 FFEHPATFDTLAMETKKKEEIKKDL------KKGYLLYGPPGTGKSTMIAAMANFL---NY-DVYDLEL 259 (504)
Q Consensus 201 ~~~~p~~f~~~~~~~~~k~~i~~~l------~rg~LL~GPpGtGKTsla~aiA~~l---~~-~i~~l~~ 259 (504)
|-..|.+|+.+ .+++++.+...+ ...+++.||||||||+++.+++..+ +. .++.+..
T Consensus 16 ~~~~p~~~~~L--n~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~ 82 (459)
T 3upu_A 16 PRGSHMTFDDL--TEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAP 82 (459)
T ss_dssp -----CCSSCC--CHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred cccCCCccccC--CHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecC
Confidence 44456777765 666666555433 2368899999999999999999877 33 4555433
No 121
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.24 E-value=0.00013 Score=70.62 Aligned_cols=32 Identities=31% Similarity=0.483 Sum_probs=28.4
Q ss_pred cccccCCCCCcHHHHHHHHHHhcCCcEEEEec
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFLNYDVYDLEL 259 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~ 259 (504)
-+++.||||||||+++++||..++..++..|.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 36789999999999999999999998887654
No 122
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.24 E-value=0.00011 Score=65.95 Aligned_cols=30 Identities=27% Similarity=0.442 Sum_probs=27.2
Q ss_pred cccccCCCCCcHHHHHHHHHHhcCCcEEEE
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFLNYDVYDL 257 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l 257 (504)
-++|.|+||+|||++++.+|..+++++++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYEFVDT 33 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEcc
Confidence 578999999999999999999999887764
No 123
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.24 E-value=9.5e-05 Score=67.59 Aligned_cols=31 Identities=29% Similarity=0.507 Sum_probs=27.1
Q ss_pred ccccccCCCCCcHHHHHHHHHHh-cCCcEEEE
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANF-LNYDVYDL 257 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~-l~~~i~~l 257 (504)
..++|+|+||||||++++.+|.. +|++++++
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~ 42 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAELDGFQHLEV 42 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSTTEEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCEEeeH
Confidence 34889999999999999999999 78777764
No 124
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.24 E-value=9e-05 Score=67.65 Aligned_cols=30 Identities=30% Similarity=0.409 Sum_probs=26.8
Q ss_pred ccccccCCCCCcHHHHHHHHHHhcCCcEEE
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANFLNYDVYD 256 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~l~~~i~~ 256 (504)
.-++|.||||+||||+++.+|..++++++.
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 457899999999999999999999988765
No 125
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.19 E-value=0.00013 Score=64.97 Aligned_cols=29 Identities=28% Similarity=0.354 Sum_probs=25.6
Q ss_pred cccccCCCCCcHHHHHHHHHHhcCCcEEEE
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFLNYDVYDL 257 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l 257 (504)
-++|.||||+||||+++.+ ..+|++++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 4678999999999999999 8899887764
No 126
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.18 E-value=0.00014 Score=67.28 Aligned_cols=31 Identities=35% Similarity=0.505 Sum_probs=27.6
Q ss_pred ccccccCCCCCcHHHHHHHHHHhcCCcEEEE
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANFLNYDVYDL 257 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l 257 (504)
.-++|.||||+||||+++.+|..++++++..
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 3478999999999999999999999887765
No 127
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.16 E-value=0.00013 Score=66.39 Aligned_cols=31 Identities=26% Similarity=0.380 Sum_probs=27.0
Q ss_pred ccccccCCCCCcHHHHHHHHHHhcCCcEEEE
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANFLNYDVYDL 257 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l 257 (504)
.-++|.|+||+||||+++.+|..+++++++.
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 34 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYGYTHLSA 34 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 4578999999999999999999999876653
No 128
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.14 E-value=0.00016 Score=64.49 Aligned_cols=29 Identities=34% Similarity=0.417 Sum_probs=26.5
Q ss_pred ccccCCCCCcHHHHHHHHHHhcCCcEEEE
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLNYDVYDL 257 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~~~i~~l 257 (504)
++|.|+||+|||++++.+|..+++++++.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 31 (168)
T 2pt5_A 3 IYLIGFMCSGKSTVGSLLSRSLNIPFYDV 31 (168)
T ss_dssp EEEESCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 67899999999999999999999888764
No 129
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.13 E-value=0.00028 Score=69.48 Aligned_cols=34 Identities=26% Similarity=0.442 Sum_probs=27.1
Q ss_pred cccccccCCCCCcHHHHHHHHHHhcCCcEEEEec
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLEL 259 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~ 259 (504)
+.-++|.||||+||||++++++..++...+.++.
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~ 66 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDN 66 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEec
Confidence 3458899999999999999999988544555554
No 130
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.12 E-value=0.00019 Score=66.30 Aligned_cols=31 Identities=26% Similarity=0.383 Sum_probs=27.2
Q ss_pred ccccccCCCCCcHHHHHHHHHHhcCCcEEEE
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANFLNYDVYDL 257 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l 257 (504)
+-++|.||||+||||+++.|+..++..+++.
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~ 49 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEACGYPFIEG 49 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHHTCCEEEG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCEEEeC
Confidence 4688999999999999999999998776654
No 131
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.12 E-value=0.00014 Score=66.14 Aligned_cols=30 Identities=30% Similarity=0.602 Sum_probs=26.2
Q ss_pred cccccCCCCCcHHHHHHHHHHhcCCcEEEE
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFLNYDVYDL 257 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l 257 (504)
-++|.||||+||||+++.+|..+++++++.
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l~~~~i~~ 35 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQELGFKKLST 35 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEECH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEecH
Confidence 478999999999999999999999776644
No 132
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.10 E-value=0.00016 Score=66.13 Aligned_cols=31 Identities=23% Similarity=0.373 Sum_probs=27.4
Q ss_pred ccccccCCCCCcHHHHHHHHHHhcCCcEEEE
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANFLNYDVYDL 257 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l 257 (504)
.-++|.||||+||||+++.+|..+++++++.
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 3478999999999999999999999887765
No 133
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.10 E-value=0.00012 Score=65.95 Aligned_cols=28 Identities=32% Similarity=0.322 Sum_probs=23.2
Q ss_pred ccccccCCCCCcHHHHHHHHHH-hcCCcE
Q 037859 227 KGYLLYGPPGTGKSTMIAAMAN-FLNYDV 254 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~-~l~~~i 254 (504)
+-++|.||||+||||+++.++. .+++.+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~~ 31 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYN 31 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEE
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcEE
Confidence 4578999999999999999998 555443
No 134
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.10 E-value=0.0012 Score=80.00 Aligned_cols=67 Identities=18% Similarity=0.302 Sum_probs=48.1
Q ss_pred hhccc--ccccCCCCCcHHHHHHHHHHh---cCCcEEEEeccccCCh------------------------HHHHHHHHh
Q 037859 224 DLKKG--YLLYGPPGTGKSTMIAAMANF---LNYDVYDLELTTVQDN------------------------SELRSLLID 274 (504)
Q Consensus 224 ~l~rg--~LL~GPpGtGKTsla~aiA~~---l~~~i~~l~~~~~~~~------------------------~~l~~l~~~ 274 (504)
.+++| +||+||||||||+|+.+++.+ .|.+.+++++...... ..+...+..
T Consensus 1077 gi~~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~i~~~l~~ 1156 (2050)
T 3cmu_A 1077 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1156 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHHHHHHHHH
Confidence 45444 999999999999999998754 3777888877653211 122334444
Q ss_pred ccCCeEEEEecccccc
Q 037859 275 TSSKSILVIEDIDCSL 290 (504)
Q Consensus 275 ~~~~~Il~iDeiD~~~ 290 (504)
...+.+|+||++..+.
T Consensus 1157 ~~~~dlvVIDsl~~L~ 1172 (2050)
T 3cmu_A 1157 SGAVDVIVVDSVAALT 1172 (2050)
T ss_dssp HTCCSEEEESCGGGCC
T ss_pred hCCCCEEEECCccccc
Confidence 5679999999999874
No 135
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.09 E-value=0.0014 Score=66.56 Aligned_cols=65 Identities=9% Similarity=0.180 Sum_probs=43.4
Q ss_pred ccc--ccccCCCCCcHHHHHHHHHHhc---CCcEEEEeccccC---------------------ChHHHHHHHH---hcc
Q 037859 226 KKG--YLLYGPPGTGKSTMIAAMANFL---NYDVYDLELTTVQ---------------------DNSELRSLLI---DTS 276 (504)
Q Consensus 226 ~rg--~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~~---------------------~~~~l~~l~~---~~~ 276 (504)
++| ++|+||||+|||+|+..+|..+ +..+.+++..... +..++...+. ...
T Consensus 59 ~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~~ 138 (356)
T 3hr8_A 59 PRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVRSG 138 (356)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTS
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhhhc
Confidence 445 7899999999999999998764 5566666654321 1122222222 124
Q ss_pred CCeEEEEecccccc
Q 037859 277 SKSILVIEDIDCSL 290 (504)
Q Consensus 277 ~~~Il~iDeiD~~~ 290 (504)
.+.+++||.+..++
T Consensus 139 ~~dlvVIDSi~~l~ 152 (356)
T 3hr8_A 139 VVDLIVVDSVAALV 152 (356)
T ss_dssp CCSEEEEECTTTCC
T ss_pred CCCeEEehHhhhhc
Confidence 67899999998865
No 136
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.08 E-value=0.00015 Score=65.94 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=22.3
Q ss_pred cccccCCCCCcHHHHHHHHHHhcC
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFLN 251 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l~ 251 (504)
-++|.||||+||||+++.+|..++
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999887
No 137
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.07 E-value=0.00021 Score=66.77 Aligned_cols=29 Identities=24% Similarity=0.312 Sum_probs=26.3
Q ss_pred ccccCCCCCcHHHHHHHHHHhcCCcEEEE
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLNYDVYDL 257 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~~~i~~l 257 (504)
++|.||||+||||+++.+|..++.+++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 67899999999999999999999887765
No 138
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.07 E-value=0.00017 Score=66.04 Aligned_cols=32 Identities=22% Similarity=0.349 Sum_probs=27.7
Q ss_pred cccccccCCCCCcHHHHHHHHHHhcCCcEEEE
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDL 257 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l 257 (504)
+.-++|.||||+||||+++.+|..+++++++.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 34588999999999999999999999777654
No 139
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.04 E-value=0.00018 Score=65.38 Aligned_cols=31 Identities=23% Similarity=0.355 Sum_probs=27.4
Q ss_pred ccccccCCCCCcHHHHHHHHHHhcCCcEEEE
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANFLNYDVYDL 257 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l 257 (504)
+-++|.|+|||||||+++.+|..++.++++.
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 4578999999999999999999999877765
No 140
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.03 E-value=0.00022 Score=66.93 Aligned_cols=30 Identities=27% Similarity=0.459 Sum_probs=26.6
Q ss_pred cccccCCCCCcHHHHHHHHHHhcCCcEEEE
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFLNYDVYDL 257 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l 257 (504)
-++|.||||+||||+++.+|..++++++..
T Consensus 6 ~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 6 RMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 478899999999999999999999877654
No 141
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.02 E-value=0.00023 Score=66.38 Aligned_cols=29 Identities=24% Similarity=0.346 Sum_probs=26.2
Q ss_pred ccccCCCCCcHHHHHHHHHHhcCCcEEEE
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLNYDVYDL 257 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~~~i~~l 257 (504)
++|.||||+||||+++.+|..++.+++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 67899999999999999999999887765
No 142
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.01 E-value=0.00026 Score=63.67 Aligned_cols=29 Identities=34% Similarity=0.539 Sum_probs=25.3
Q ss_pred cccccCCCCCcHHHHHHHHHHhcCCcEEE
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFLNYDVYD 256 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l~~~i~~ 256 (504)
-++|.||||+||||+++.++..+|..+++
T Consensus 10 ~i~l~G~~GsGKSTl~~~l~~~~g~~~i~ 38 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVASEVAHQLHAAFLD 38 (175)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHhhCcEEEe
Confidence 47899999999999999999998876554
No 143
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.00 E-value=0.00023 Score=67.26 Aligned_cols=31 Identities=19% Similarity=0.410 Sum_probs=27.2
Q ss_pred ccccccCCCCCcHHHHHHHHHHhcCCcEEEE
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANFLNYDVYDL 257 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l 257 (504)
.-++|.||||+||||+++.||..+++.+++.
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 3478999999999999999999999877654
No 144
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.99 E-value=0.00027 Score=65.28 Aligned_cols=31 Identities=19% Similarity=0.319 Sum_probs=27.2
Q ss_pred ccccccCCCCCcHHHHHHHHHHhcCCcEEEE
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANFLNYDVYDL 257 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l 257 (504)
+-++|.|||||||||+++.+|..+++++++.
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~ 46 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDYSFVHLSA 46 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeH
Confidence 4578999999999999999999999877664
No 145
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.99 E-value=0.00035 Score=67.27 Aligned_cols=36 Identities=19% Similarity=0.231 Sum_probs=28.7
Q ss_pred cccccccCCCCCcHHHHHHHHHHhcCCcEEEEeccc
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTT 261 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~ 261 (504)
+.-++|.||||+||||+++.++..++...+.++...
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~ 67 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDS 67 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHH
Confidence 345889999999999999999999986555555443
No 146
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.98 E-value=0.00024 Score=64.26 Aligned_cols=29 Identities=21% Similarity=0.227 Sum_probs=22.3
Q ss_pred ccccccCCCCCcHHHHHHHHHHhcCCcEE
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANFLNYDVY 255 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~l~~~i~ 255 (504)
.-++|.|+||+||||+++.+|..++.+++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 34789999999999999999999999876
No 147
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.97 E-value=0.0018 Score=60.00 Aligned_cols=110 Identities=12% Similarity=0.202 Sum_probs=68.3
Q ss_pred cc-ccccCCCCCcHHHHHHHHHHhc---CCcEEEEecccc--CC-hHH-----------------------------HHH
Q 037859 227 KG-YLLYGPPGTGKSTMIAAMANFL---NYDVYDLELTTV--QD-NSE-----------------------------LRS 270 (504)
Q Consensus 227 rg-~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~--~~-~~~-----------------------------l~~ 270 (504)
+| +++|+++|.|||++|-++|-.. |+.++.+.+..- .. ... ...
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~ 107 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMA 107 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHH
Confidence 45 6789999999999999997654 788887754331 10 011 111
Q ss_pred HHHh----c--cCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccCC
Q 037859 271 LLID----T--SSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASG 344 (504)
Q Consensus 271 l~~~----~--~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~ 344 (504)
.+.. . ...-+|++||+-..+.. .-.....++..+. ...
T Consensus 108 ~l~~a~~~l~~~~yDlvILDEi~~al~~--------------------------------g~l~~~ev~~~l~----~Rp 151 (196)
T 1g5t_A 108 VWQHGKRMLADPLLDMVVLDELTYMVAY--------------------------------DYLPLEEVISALN----ARP 151 (196)
T ss_dssp HHHHHHHHTTCTTCSEEEEETHHHHHHT--------------------------------TSSCHHHHHHHHH----TSC
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccccC--------------------------------CCCCHHHHHHHHH----hCc
Confidence 1111 1 34679999999654210 0112233444444 234
Q ss_pred CceEEEEecCCCCCCChhhhcCCCceeEEEecC
Q 037859 345 EERIIVFTTNYVDKLDPALIRRGRMDKHIEMSY 377 (504)
Q Consensus 345 ~~~ivI~tTN~~e~Ld~ALlRpGR~d~~I~~~~ 377 (504)
+..-+|+|+|.+ +++|+. .-|.+=+|..
T Consensus 152 ~~~~vIlTGr~a---p~~l~e--~AD~VTem~~ 179 (196)
T 1g5t_A 152 GHQTVIITGRGC---HRDILD--LADTVSELRP 179 (196)
T ss_dssp TTCEEEEECSSC---CHHHHH--HCSEEEECCC
T ss_pred CCCEEEEECCCC---cHHHHH--hCcceeeecc
Confidence 556789999875 789998 8888877754
No 148
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.96 E-value=0.00025 Score=66.61 Aligned_cols=29 Identities=24% Similarity=0.384 Sum_probs=26.4
Q ss_pred ccccCCCCCcHHHHHHHHHHhcCCcEEEE
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLNYDVYDL 257 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~~~i~~l 257 (504)
++|.||||+||||+++.||..++++++..
T Consensus 8 I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 8 LILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 78899999999999999999999887764
No 149
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=96.95 E-value=0.017 Score=61.93 Aligned_cols=36 Identities=22% Similarity=0.321 Sum_probs=30.2
Q ss_pred cChhHHHHHHHhh-------cccccccCCCCCcHHHHHHHHHH
Q 037859 213 METKKKEEIKKDL-------KKGYLLYGPPGTGKSTMIAAMAN 248 (504)
Q Consensus 213 ~~~~~k~~i~~~l-------~rg~LL~GPpGtGKTsla~aiA~ 248 (504)
+.+..+++|.+.+ .+-+.++|++|+|||+||+.+++
T Consensus 132 GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 132 IREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 6777788888777 24477999999999999999997
No 150
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.94 E-value=0.00029 Score=66.84 Aligned_cols=31 Identities=29% Similarity=0.387 Sum_probs=27.3
Q ss_pred ccccccCCCCCcHHHHHHHHHHhcCCcEEEE
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANFLNYDVYDL 257 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l 257 (504)
.-++|.|+|||||||+++.||..++++++..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 3588999999999999999999999876654
No 151
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=96.93 E-value=0.0061 Score=69.55 Aligned_cols=50 Identities=18% Similarity=0.327 Sum_probs=35.9
Q ss_pred ccChhHHHHHHHhh-----cccccccCCCCCcHHHHHHHHHHh------cCCcEEEEeccc
Q 037859 212 AMETKKKEEIKKDL-----KKGYLLYGPPGTGKSTMIAAMANF------LNYDVYDLELTT 261 (504)
Q Consensus 212 ~~~~~~k~~i~~~l-----~rg~LL~GPpGtGKTsla~aiA~~------l~~~i~~l~~~~ 261 (504)
++.+...++|.+.+ .+-+.++||+|.|||+||+.+++. +...++-++++.
T Consensus 131 VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~ 191 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN 191 (1221)
T ss_dssp CCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCC
T ss_pred CCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCC
Confidence 56666777777766 245789999999999999999853 344455555543
No 152
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.92 E-value=0.00035 Score=63.70 Aligned_cols=31 Identities=39% Similarity=0.524 Sum_probs=25.7
Q ss_pred cccccCCCCCcHHHHHHHHHHhcCCcEEEEe
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFLNYDVYDLE 258 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~ 258 (504)
-+.|.||||+||||+++.||+.++...+.++
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~ 41 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANLPGVPKVHFH 41 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTCSSSCEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCCeEEEc
Confidence 3789999999999999999998766655554
No 153
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.89 E-value=0.00053 Score=62.39 Aligned_cols=31 Identities=26% Similarity=0.317 Sum_probs=27.6
Q ss_pred ccccCCCCCcHHHHHHHHHHhc---CCcEEEEec
Q 037859 229 YLLYGPPGTGKSTMIAAMANFL---NYDVYDLEL 259 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~ 259 (504)
+.|.|+||+||||+++.++..+ |++++..+-
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~ 36 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYRE 36 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 5789999999999999999988 888887753
No 154
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.87 E-value=0.00042 Score=69.32 Aligned_cols=34 Identities=24% Similarity=0.483 Sum_probs=30.0
Q ss_pred cccccccCCCCCcHHHHHHHHHHhcCCcEEEEec
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLEL 259 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~ 259 (504)
++.++|.||+|||||+++.++|..++..++.+|.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds 38 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDS 38 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccc
Confidence 3468899999999999999999999988888754
No 155
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.86 E-value=0.00049 Score=63.60 Aligned_cols=30 Identities=20% Similarity=0.410 Sum_probs=25.2
Q ss_pred ccccccCCCCCcHHHHHHHHHHhcCCcEEE
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANFLNYDVYD 256 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~l~~~i~~ 256 (504)
.-+.|.||||+||||+++.||+.+|..+++
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~ 59 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADETGLEFAE 59 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHCCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeEEc
Confidence 347889999999999999999998765443
No 156
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.86 E-value=0.00024 Score=66.77 Aligned_cols=30 Identities=17% Similarity=0.255 Sum_probs=26.0
Q ss_pred ccccccCCCCCcHHHHHHHHHHhcCCcEEE
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANFLNYDVYD 256 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~l~~~i~~ 256 (504)
.-++|.||||+||||+++.||..++...++
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 35 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQLAHIS 35 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 457899999999999999999999976544
No 157
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.86 E-value=0.00034 Score=65.36 Aligned_cols=29 Identities=21% Similarity=0.251 Sum_probs=26.1
Q ss_pred ccccCCCCCcHHHHHHHHHHhcCCcEEEE
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLNYDVYDL 257 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~~~i~~l 257 (504)
++|.||||+||||+++.+|..++++++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 67899999999999999999999877664
No 158
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.86 E-value=0.0074 Score=57.08 Aligned_cols=33 Identities=21% Similarity=0.213 Sum_probs=26.8
Q ss_pred cccccCCCCCcHHHHHHHHHHhc---CCcEEEEecc
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFL---NYDVYDLELT 260 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~ 260 (504)
.+++.|+||||||+++-++|..+ |+++..+++.
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D 43 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVE 43 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeC
Confidence 37889999999999999998775 7777666553
No 159
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.81 E-value=0.00067 Score=61.32 Aligned_cols=30 Identities=33% Similarity=0.598 Sum_probs=27.2
Q ss_pred ccccCCCCCcHHHHHHHHHHhc---CCcEEEEe
Q 037859 229 YLLYGPPGTGKSTMIAAMANFL---NYDVYDLE 258 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~ 258 (504)
+.|.|++|+||||+++.++..+ |++++.++
T Consensus 8 i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d 40 (179)
T 2pez_A 8 VWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD 40 (179)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhCCCcEEEEC
Confidence 6789999999999999999998 88888775
No 160
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.81 E-value=0.0018 Score=65.56 Aligned_cols=65 Identities=15% Similarity=0.236 Sum_probs=43.4
Q ss_pred ccc--ccccCCCCCcHHHHHHHHHHhc---CCcEEEEeccccC---------------------ChHHHHHHHH---hcc
Q 037859 226 KKG--YLLYGPPGTGKSTMIAAMANFL---NYDVYDLELTTVQ---------------------DNSELRSLLI---DTS 276 (504)
Q Consensus 226 ~rg--~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~~---------------------~~~~l~~l~~---~~~ 276 (504)
++| ++++||||+|||+|+..+|... +..+.+++..... +..++..++. ...
T Consensus 59 ~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~ 138 (349)
T 2zr9_A 59 PRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSG 138 (349)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcC
Confidence 445 8999999999999999988654 5566666654311 1122222222 224
Q ss_pred CCeEEEEecccccc
Q 037859 277 SKSILVIEDIDCSL 290 (504)
Q Consensus 277 ~~~Il~iDeiD~~~ 290 (504)
.+.+|+||++..++
T Consensus 139 ~~~lIVIDsl~~l~ 152 (349)
T 2zr9_A 139 ALDIIVIDSVAALV 152 (349)
T ss_dssp CCSEEEEECGGGCC
T ss_pred CCCEEEEcChHhhc
Confidence 58999999999875
No 161
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.81 E-value=0.001 Score=72.89 Aligned_cols=54 Identities=30% Similarity=0.424 Sum_probs=38.9
Q ss_pred cccccccChhHHHHHHHhh-ccc-ccccCCCCCcHHHHHHHHHHhc---CCcEEEEecc
Q 037859 207 TFDTLAMETKKKEEIKKDL-KKG-YLLYGPPGTGKSTMIAAMANFL---NYDVYDLELT 260 (504)
Q Consensus 207 ~f~~~~~~~~~k~~i~~~l-~rg-~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~ 260 (504)
.|-+-.+++.++++|...+ .++ .|+.||||||||+++..+..++ +..+..+..+
T Consensus 184 ~~~~~~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~T 242 (646)
T 4b3f_X 184 TFFNTCLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPS 242 (646)
T ss_dssp CCSSTTCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred cccCCCCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCc
Confidence 3334468999999999888 344 6789999999998777665544 5566655444
No 162
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.79 E-value=0.0015 Score=65.24 Aligned_cols=34 Identities=12% Similarity=0.181 Sum_probs=27.5
Q ss_pred cccccCCCCCcHHHHHHHHHHhc---------CCcEEEEeccc
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFL---------NYDVYDLELTT 261 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l---------~~~i~~l~~~~ 261 (504)
-++++||||+|||+++..+|... +..+++++...
T Consensus 109 i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 109 MTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred EEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 37899999999999999998764 45677776654
No 163
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.78 E-value=0.00044 Score=63.88 Aligned_cols=29 Identities=34% Similarity=0.363 Sum_probs=25.8
Q ss_pred ccccCCCCCcHHHHHHHHHHhcCCcEEEEe
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLNYDVYDLE 258 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~~~i~~l~ 258 (504)
+.|.||+||||||+++.+|+ +|+++++.+
T Consensus 4 i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d 32 (204)
T 2if2_A 4 IGLTGNIGCGKSTVAQMFRE-LGAYVLDAD 32 (204)
T ss_dssp EEEEECTTSSHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEECCCCcCHHHHHHHHHH-CCCEEEEcc
Confidence 67899999999999999999 888877654
No 164
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.77 E-value=0.00056 Score=64.55 Aligned_cols=30 Identities=23% Similarity=0.471 Sum_probs=26.2
Q ss_pred cccccccCCCCCcHHHHHHHHHHhcCCcEE
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFLNYDVY 255 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l~~~i~ 255 (504)
++-++|.||||+||+|.|+.||..++++.+
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~~~g~~hI 58 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQKFHFNHL 58 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHHCCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHCCceE
Confidence 456888999999999999999999987644
No 165
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.77 E-value=0.00062 Score=64.20 Aligned_cols=29 Identities=24% Similarity=0.425 Sum_probs=25.6
Q ss_pred ccccCCCCCcHHHHHHHHHHhcCCcEEEE
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLNYDVYDL 257 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~~~i~~l 257 (504)
++|.||||+||||+++.+|..++++++..
T Consensus 3 I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 67899999999999999999999766554
No 166
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.77 E-value=0.0038 Score=63.53 Aligned_cols=63 Identities=13% Similarity=0.203 Sum_probs=43.2
Q ss_pred cccccCCCCCcHHHHHHHHHHhc---CCcEEEEeccccC---------------------ChHHHHHHHHh---ccCCeE
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFL---NYDVYDLELTTVQ---------------------DNSELRSLLID---TSSKSI 280 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~~---------------------~~~~l~~l~~~---~~~~~I 280 (504)
-++|+||||+|||+|+..+|... +.++.++++..-. +...+...+.. .....+
T Consensus 76 li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~~~~~l 155 (366)
T 1xp8_A 76 ITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRSGAIDV 155 (366)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCSE
T ss_pred EEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHhcCCCCE
Confidence 38899999999999999888654 5677777654311 11233333322 245789
Q ss_pred EEEecccccc
Q 037859 281 LVIEDIDCSL 290 (504)
Q Consensus 281 l~iDeiD~~~ 290 (504)
||||.+..+.
T Consensus 156 VVIDsl~~l~ 165 (366)
T 1xp8_A 156 VVVDSVAALT 165 (366)
T ss_dssp EEEECTTTCC
T ss_pred EEEeChHHhc
Confidence 9999999874
No 167
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.77 E-value=0.00047 Score=66.05 Aligned_cols=31 Identities=26% Similarity=0.431 Sum_probs=27.1
Q ss_pred ccccccCCCCCcHHHHHHHHHHhcCCcEEEE
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANFLNYDVYDL 257 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l 257 (504)
.-++|.||||+||||+++.++..++...+..
T Consensus 30 ~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 3488999999999999999999998877754
No 168
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.75 E-value=0.0011 Score=61.23 Aligned_cols=30 Identities=23% Similarity=0.377 Sum_probs=25.1
Q ss_pred cccccCCCCCcHHHHHHHHHHhcCCc--EEEE
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFLNYD--VYDL 257 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l~~~--i~~l 257 (504)
-++|.||||+||||+++.+|..++.. ++..
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~ 37 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKDWIELKRDVYLT 37 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTTSCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEe
Confidence 47889999999999999999998763 5443
No 169
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.75 E-value=0.00063 Score=62.39 Aligned_cols=27 Identities=33% Similarity=0.739 Sum_probs=24.5
Q ss_pred ccccCCCCCcHHHHHHHHHHhcCCcEE
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLNYDVY 255 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~~~i~ 255 (504)
+.|.|+||+||||+++.+|..++..++
T Consensus 3 I~i~G~~GsGKsT~~~~L~~~l~~~~~ 29 (205)
T 2jaq_A 3 IAIFGTVGAGKSTISAEISKKLGYEIF 29 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred EEEECCCccCHHHHHHHHHHhcCCcEE
Confidence 678999999999999999999998655
No 170
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.74 E-value=0.0025 Score=60.67 Aligned_cols=48 Identities=19% Similarity=0.245 Sum_probs=36.0
Q ss_pred cccChhHHHHHHHhh-cccccccCCCCCcHHHHHHHHHHhcCCcEEEEe
Q 037859 211 LAMETKKKEEIKKDL-KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLE 258 (504)
Q Consensus 211 ~~~~~~~k~~i~~~l-~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~ 258 (504)
+.+.+.+++.+...+ .+.++++||+|+|||.++.+++..++..++.+.
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~ 140 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINELSTPTLIVV 140 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHSCSCEEEEE
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEe
Confidence 455666666665555 334899999999999999999988877666553
No 171
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.73 E-value=0.00069 Score=62.29 Aligned_cols=33 Identities=15% Similarity=0.173 Sum_probs=28.1
Q ss_pred cccccCCCCCcHHHHHHHHHHhc-CCcEEEEecc
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFL-NYDVYDLELT 260 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l-~~~i~~l~~~ 260 (504)
-+.|.||||+||||+++.+|..+ |++++.++..
T Consensus 6 ~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~~ 39 (204)
T 2v54_A 6 LIVFEGLDKSGKTTQCMNIMESIPANTIKYLNFP 39 (204)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTSCGGGEEEEESS
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHCCCceEEEecC
Confidence 36789999999999999999999 5888776543
No 172
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.73 E-value=0.00069 Score=63.47 Aligned_cols=29 Identities=38% Similarity=0.620 Sum_probs=25.8
Q ss_pred cccccCCCCCcHHHHHHHHHHhcCCcEEE
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFLNYDVYD 256 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l~~~i~~ 256 (504)
-+.|.|||||||||+++.+|+.+++++++
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 47789999999999999999999987665
No 173
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.70 E-value=0.00087 Score=61.16 Aligned_cols=31 Identities=32% Similarity=0.354 Sum_probs=26.3
Q ss_pred ccccCCCCCcHHHHHHHHHHhc---CCcEEEEec
Q 037859 229 YLLYGPPGTGKSTMIAAMANFL---NYDVYDLEL 259 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~ 259 (504)
+.|.|||||||||+++.++..+ |++++...-
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 36 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC
Confidence 5689999999999999999999 998876544
No 174
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.69 E-value=0.00077 Score=63.08 Aligned_cols=27 Identities=30% Similarity=0.527 Sum_probs=24.2
Q ss_pred ccccCCCCCcHHHHHHHHHHhcCCcEE
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLNYDVY 255 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~~~i~ 255 (504)
++|.||||+||+|.|+.||..+|++.+
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g~~~i 29 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKGFVHI 29 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEE
Confidence 578899999999999999999987654
No 175
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.68 E-value=0.00065 Score=65.55 Aligned_cols=32 Identities=34% Similarity=0.552 Sum_probs=28.4
Q ss_pred ccccccCCCCCcHHHHHHHHHHhcCCcEEEEe
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANFLNYDVYDLE 258 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~ 258 (504)
.-+.|.||||+||||+++.+|..+++++++.+
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d 80 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLGYTFFDCD 80 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcEEeCc
Confidence 35889999999999999999999999888753
No 176
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.67 E-value=0.00097 Score=61.58 Aligned_cols=32 Identities=31% Similarity=0.401 Sum_probs=25.2
Q ss_pred ccccccCCCCCcHHHHHHHHHHhc---CCcEEEEe
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANFL---NYDVYDLE 258 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~ 258 (504)
.-+.|.||+|+||||++++||+.+ |...+.++
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d 60 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILD 60 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEec
Confidence 347789999999999999999988 44434444
No 177
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.66 E-value=0.00062 Score=62.97 Aligned_cols=30 Identities=27% Similarity=0.340 Sum_probs=25.6
Q ss_pred cccccCCCCCcHHHHHHHHHHhcCCcEEEEe
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFLNYDVYDLE 258 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~ 258 (504)
-+.|.|||||||||+++.+|+ +|+++++.+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~id~d 33 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLVDAD 33 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcccchH
Confidence 367899999999999999998 888877643
No 178
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.66 E-value=0.00046 Score=62.63 Aligned_cols=23 Identities=39% Similarity=0.683 Sum_probs=21.4
Q ss_pred ccccCCCCCcHHHHHHHHHHhcC
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLN 251 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~ 251 (504)
++|.||||+||||+++.++..++
T Consensus 4 I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 4 GIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999875
No 179
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.65 E-value=0.016 Score=62.07 Aligned_cols=43 Identities=5% Similarity=0.045 Sum_probs=35.6
Q ss_pred CCceEEEEecCCCC--CCChhhhcCCCceeEEEecCCCHHHHHHHHH
Q 037859 344 GEERIIVFTTNYVD--KLDPALIRRGRMDKHIEMSYCCFEAFKVLAK 388 (504)
Q Consensus 344 ~~~~ivI~tTN~~e--~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~ 388 (504)
.-++.+|++|.++. .|+..+.. -|...|.+...+..+.+.++.
T Consensus 376 a~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~s~~Dsr~ILd 420 (574)
T 2iut_A 376 AAGIHLILATQRPSVDVITGLIKA--NIPTRIAFQVSSKIDSRTILD 420 (574)
T ss_dssp TTTEEEEEEESCCCTTTSCHHHHH--TCCEEEEECCSCHHHHHHHHS
T ss_pred hCCeEEEEEecCcccccccHHHHh--hhccEEEEEcCCHHHHHHhcC
Confidence 35588999999987 78888887 788899999999888877763
No 180
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.63 E-value=0.00071 Score=62.33 Aligned_cols=31 Identities=23% Similarity=0.252 Sum_probs=27.6
Q ss_pred cccccCCCCCcHHHHHHHHHHhcCCcEEEEe
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFLNYDVYDLE 258 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~ 258 (504)
-+.|.||||+|||++++.+|..+++++++.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d 34 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSG 34 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccc
Confidence 4678999999999999999999998888754
No 181
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.63 E-value=0.0031 Score=59.71 Aligned_cols=61 Identities=11% Similarity=0.252 Sum_probs=39.5
Q ss_pred ccccCCCCCcHHHHHHHHHHhc---CCcEEEEeccc-------c-------------CChHHHHHHHHhc---cCCeEEE
Q 037859 229 YLLYGPPGTGKSTMIAAMANFL---NYDVYDLELTT-------V-------------QDNSELRSLLIDT---SSKSILV 282 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~-------~-------------~~~~~l~~l~~~~---~~~~Il~ 282 (504)
++++||||+|||+++..+|..+ +..++.+.... + ....++...+.+. ..+.+|+
T Consensus 15 ~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~~~~dvVi 94 (223)
T 2b8t_A 15 EFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFNDETKVIG 94 (223)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCTTCCEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHHHhhCCCCCEEE
Confidence 6778999999999998887665 55666552211 1 1112344444332 2478999
Q ss_pred Eeccccc
Q 037859 283 IEDIDCS 289 (504)
Q Consensus 283 iDeiD~~ 289 (504)
|||+..+
T Consensus 95 IDEaQ~l 101 (223)
T 2b8t_A 95 IDEVQFF 101 (223)
T ss_dssp ECSGGGS
T ss_pred EecCccC
Confidence 9999864
No 182
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.63 E-value=0.001 Score=64.23 Aligned_cols=31 Identities=42% Similarity=0.503 Sum_probs=26.4
Q ss_pred cccccCCCCCcHHHHHHHHHHh---cCCcEEEEe
Q 037859 228 GYLLYGPPGTGKSTMIAAMANF---LNYDVYDLE 258 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~---l~~~i~~l~ 258 (504)
-++|.|+||+||||+++.++.. .|++++.++
T Consensus 6 lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~ 39 (260)
T 3a4m_A 6 LIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLG 39 (260)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEEC
Confidence 4789999999999999999998 688777444
No 183
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.63 E-value=0.0036 Score=64.53 Aligned_cols=33 Identities=21% Similarity=0.190 Sum_probs=24.0
Q ss_pred ccccCCCCCcHHHHHHHHHHhc---------CCcEEEEeccc
Q 037859 229 YLLYGPPGTGKSTMIAAMANFL---------NYDVYDLELTT 261 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l---------~~~i~~l~~~~ 261 (504)
++|+||||||||+|+..+|-.. +...++++...
T Consensus 181 ~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 181 TELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred EEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 7899999999999999776332 23466665543
No 184
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.59 E-value=0.0038 Score=62.91 Aligned_cols=33 Identities=12% Similarity=0.125 Sum_probs=26.8
Q ss_pred ccccCCCCCcHHHHHHHHHHhc---------CCcEEEEeccc
Q 037859 229 YLLYGPPGTGKSTMIAAMANFL---------NYDVYDLELTT 261 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l---------~~~i~~l~~~~ 261 (504)
++|+||||+|||+|+..+|... +..+++++...
T Consensus 125 ~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 125 TEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp EEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred EEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 7899999999999999998862 45677776654
No 185
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.58 E-value=0.0008 Score=62.20 Aligned_cols=31 Identities=29% Similarity=0.310 Sum_probs=27.3
Q ss_pred cccccCCCCCcHHHHHHHHHHhcCCcEEEEe
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFLNYDVYDLE 258 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~ 258 (504)
-+.|.|++||||||+++.+|..+|+++++.|
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~vid~D 44 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAHVVNVD 44 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEEECc
Confidence 3678999999999999999999998887754
No 186
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.58 E-value=0.001 Score=63.43 Aligned_cols=31 Identities=32% Similarity=0.383 Sum_probs=27.1
Q ss_pred ccccccCCCCCcHHHHHHHHHHhcCCcEEEE
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANFLNYDVYDL 257 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l 257 (504)
.-+.|.||||+|||++++.||..+++++++.
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg~~~~d~ 40 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALGARYLDT 40 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcccC
Confidence 3578899999999999999999999877654
No 187
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.58 E-value=0.0035 Score=63.59 Aligned_cols=64 Identities=11% Similarity=0.209 Sum_probs=44.1
Q ss_pred ccccccCCCCCcHHHHHHHHHHhc---CCcEEEEeccccC---------------------ChHHHHHHHH---hccCCe
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANFL---NYDVYDLELTTVQ---------------------DNSELRSLLI---DTSSKS 279 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~~---------------------~~~~l~~l~~---~~~~~~ 279 (504)
+-++++||||+|||+||..+|..+ +.++.++++.... +...+..++. ....+.
T Consensus 64 ~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~~~~~ 143 (356)
T 1u94_A 64 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVD 143 (356)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHhccCCC
Confidence 348899999999999999988754 5677777763211 1223333332 224678
Q ss_pred EEEEecccccc
Q 037859 280 ILVIEDIDCSL 290 (504)
Q Consensus 280 Il~iDeiD~~~ 290 (504)
+|+||.+..+.
T Consensus 144 lVVIDsl~~l~ 154 (356)
T 1u94_A 144 VIVVDSVAALT 154 (356)
T ss_dssp EEEEECGGGCC
T ss_pred EEEEcCHHHhc
Confidence 99999999864
No 188
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.49 E-value=0.0011 Score=63.23 Aligned_cols=29 Identities=28% Similarity=0.523 Sum_probs=25.2
Q ss_pred ccccccCCCCCcHHHHHHHHHHhcCCcEE
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANFLNYDVY 255 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~l~~~i~ 255 (504)
.-+.|.||||+||||+++.||..+|...+
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 45889999999999999999999887544
No 189
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.45 E-value=0.007 Score=60.18 Aligned_cols=65 Identities=17% Similarity=0.189 Sum_probs=41.0
Q ss_pred ccc-ccccCCCCCcHHHHHHHHHHhc-----CCcEEEEecccc---------------------CChHHH-HHHHH----
Q 037859 226 KKG-YLLYGPPGTGKSTMIAAMANFL-----NYDVYDLELTTV---------------------QDNSEL-RSLLI---- 273 (504)
Q Consensus 226 ~rg-~LL~GPpGtGKTsla~aiA~~l-----~~~i~~l~~~~~---------------------~~~~~l-~~l~~---- 273 (504)
++| ++++||||+|||+|+-.++... +..+.+++...- .+.+++ ..+..
T Consensus 27 ~~GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~~ 106 (333)
T 3io5_A 27 QSGLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDA 106 (333)
T ss_dssp CSEEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHHHT
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHHH
Confidence 445 5789999999999977665433 455666665431 111222 22221
Q ss_pred -hccCCeEEEEecccccc
Q 037859 274 -DTSSKSILVIEDIDCSL 290 (504)
Q Consensus 274 -~~~~~~Il~iDeiD~~~ 290 (504)
....+.+|+||-|..++
T Consensus 107 i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 107 IERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp CCTTCCEEEEEECSTTCB
T ss_pred hhccCceEEEEecccccc
Confidence 22468999999999875
No 190
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.44 E-value=0.0041 Score=64.80 Aligned_cols=99 Identities=19% Similarity=0.277 Sum_probs=65.3
Q ss_pred ChHHHHHHHHh-ccCCeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCcccc
Q 037859 264 DNSELRSLLID-TSSKSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSA 342 (504)
Q Consensus 264 ~~~~l~~l~~~-~~~~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~ 342 (504)
+...+.+.-.. +....|+++||||.+....+ ..+++.....+...||..|||-...
T Consensus 236 ~~~~~~~~ai~~ae~~~il~~DEidki~~~~~-----------------------~~~~D~s~egvq~aLL~~le~~~~~ 292 (444)
T 1g41_A 236 NPEELKQKAIDAVEQNGIVFIDEIDKICKKGE-----------------------YSGADVSREGVQRDLLPLVEGSTVS 292 (444)
T ss_dssp CHHHHHHHHHHHHHHHCEEEEETGGGGSCCSS-----------------------CSSSHHHHHHHHHHHHHHHHCCEEE
T ss_pred CHHHHHHHHHHHhccCCeeeHHHHHHHhhccC-----------------------CCCCCchHHHHHHHHHHHhcccccc
Confidence 44444443333 34678999999999742100 0111222233567899999984321
Q ss_pred ------CCCceEEEEec-----CCCCCCChhhhcCCCceeEEEecCCCHHHHHHHHH
Q 037859 343 ------SGEERIIVFTT-----NYVDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAK 388 (504)
Q Consensus 343 ------~~~~~ivI~tT-----N~~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~ 388 (504)
....+++|+|. |..+ +-|.|+. ||+.+|.++..+.+++..|+.
T Consensus 293 ~~~~~~d~~~ilfI~~gaf~~~~~~d-lipel~~--R~~i~i~l~~lt~~e~~~Il~ 346 (444)
T 1g41_A 293 TKHGMVKTDHILFIASGAFQVARPSD-LIPELQG--RLPIRVELTALSAADFERILT 346 (444)
T ss_dssp ETTEEEECTTCEEEEEECCSSCCGGG-SCHHHHT--TCCEEEECCCCCHHHHHHHHH
T ss_pred cccceecCCcEEEEeccccccCChhh-cchHHhc--ccceeeeCCCCCHHHHHHHHH
Confidence 23557888887 5545 4588998 999999999999999999983
No 191
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.42 E-value=0.00051 Score=63.59 Aligned_cols=27 Identities=26% Similarity=0.336 Sum_probs=23.1
Q ss_pred ccccccCCCCCcHHHHHHHHHHhcCCc
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANFLNYD 253 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~l~~~ 253 (504)
.-+.|.|+|||||||+++.+|..++..
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 347889999999999999999987544
No 192
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.41 E-value=0.0011 Score=60.89 Aligned_cols=31 Identities=35% Similarity=0.494 Sum_probs=26.8
Q ss_pred ccccccCCCCCcHHHHHHHHHHhcCCcEEEEe
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANFLNYDVYDLE 258 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~ 258 (504)
.-+.|.|++|||||++++.+|.. |+++++.+
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~-g~~~id~d 39 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW-GYPVLDLD 39 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT-TCCEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHC-CCEEEccc
Confidence 34789999999999999999998 88877654
No 193
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.38 E-value=0.0015 Score=60.97 Aligned_cols=31 Identities=32% Similarity=0.354 Sum_probs=27.5
Q ss_pred cccccCCCCCcHHHHHHHHHHhcCCcEEEEe
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFLNYDVYDLE 258 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~ 258 (504)
-+.|.|+||||||++++.+|..+|+++++.+
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d 35 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVASELSMIYVDTG 35 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceecCC
Confidence 4779999999999999999999998877653
No 194
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.33 E-value=0.0012 Score=66.24 Aligned_cols=34 Identities=26% Similarity=0.397 Sum_probs=29.8
Q ss_pred cccccCCCCCcHHHHHHHHHHhcCCcEEEEeccc
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFLNYDVYDLELTT 261 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~ 261 (504)
-++|.||+|+|||+|+..||..++..++..|.-.
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~q 75 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQ 75 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTSCEEEEECCSST
T ss_pred eEEEECCCCCCHHHHHHHHHHHCCCcEEcccccc
Confidence 4789999999999999999999998888776553
No 195
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.33 E-value=0.011 Score=51.36 Aligned_cols=22 Identities=23% Similarity=0.382 Sum_probs=19.6
Q ss_pred cccccCCCCCcHHHHHHHHHHh
Q 037859 228 GYLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~ 249 (504)
-+++.|+||+|||+|+.++.+.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
No 196
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.32 E-value=0.0019 Score=58.75 Aligned_cols=25 Identities=40% Similarity=0.628 Sum_probs=21.7
Q ss_pred cccccCCCCCcHHHHHHHHHHhcCC
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFLNY 252 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l~~ 252 (504)
-+.|.||||+||||+++.|+..++.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g 28 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDN 28 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC
Confidence 3678999999999999999986654
No 197
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.32 E-value=0.0015 Score=61.00 Aligned_cols=30 Identities=40% Similarity=0.492 Sum_probs=25.8
Q ss_pred cccccCCCCCcHHHHHHHHHHhcCCcEEEEe
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFLNYDVYDLE 258 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~ 258 (504)
-+.|.|++|+||||+++.+|. +|+++++.+
T Consensus 6 ~I~i~G~~GSGKST~~~~L~~-lg~~~id~D 35 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFAD-LGINVIDAD 35 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-cCCEEEEcc
Confidence 467899999999999999998 888777653
No 198
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.31 E-value=0.0042 Score=58.46 Aligned_cols=33 Identities=18% Similarity=0.222 Sum_probs=26.2
Q ss_pred ccccCCCCCcHHHHHHHHHHh--c-------CCcEEEEeccc
Q 037859 229 YLLYGPPGTGKSTMIAAMANF--L-------NYDVYDLELTT 261 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~--l-------~~~i~~l~~~~ 261 (504)
++|+||||+|||+|+..+|.. + +...++++...
T Consensus 27 ~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 27 TEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred EEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 789999999999999999984 3 44566665543
No 199
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.29 E-value=0.002 Score=61.93 Aligned_cols=29 Identities=38% Similarity=0.613 Sum_probs=25.9
Q ss_pred cccccCCCCCcHHHHHHHHHHhcCCcEEE
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFLNYDVYD 256 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l~~~i~~ 256 (504)
-+.|.||+|+||||+++.||..+|+..++
T Consensus 29 ~I~I~G~~GsGKSTl~k~La~~Lg~~~~d 57 (252)
T 4e22_A 29 VITVDGPSGAGKGTLCKALAESLNWRLLD 57 (252)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence 37789999999999999999999987664
No 200
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.27 E-value=0.001 Score=67.25 Aligned_cols=29 Identities=31% Similarity=0.548 Sum_probs=25.7
Q ss_pred cccccCCCCCcHHHHHHHHHHhcCCcEEE
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFLNYDVYD 256 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l~~~i~~ 256 (504)
.++|.||||+|||+++++||+.++++++.
T Consensus 26 ~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 26 CVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 37899999999999999999999887743
No 201
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.25 E-value=0.0015 Score=60.62 Aligned_cols=30 Identities=23% Similarity=0.303 Sum_probs=26.0
Q ss_pred cccccccCCCCCcHHHHHHHHHHhcCCcEEE
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFLNYDVYD 256 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~ 256 (504)
.++++|.||+|+|||+||.++|...+ .++.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIs 63 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIA 63 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEe
Confidence 57899999999999999999999876 5544
No 202
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.24 E-value=0.0026 Score=57.79 Aligned_cols=31 Identities=39% Similarity=0.630 Sum_probs=24.7
Q ss_pred cccccCCCCCcHHHHHHHHHHhcC---CcEEEEe
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFLN---YDVYDLE 258 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l~---~~i~~l~ 258 (504)
-++|.|+||+||||+++.+|..++ .++..++
T Consensus 15 ~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~ 48 (186)
T 2yvu_A 15 VVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLD 48 (186)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEee
Confidence 478899999999999999999874 4444443
No 203
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.24 E-value=0.0018 Score=59.89 Aligned_cols=26 Identities=27% Similarity=0.478 Sum_probs=23.0
Q ss_pred cccccccCCCCCcHHHHHHHHHHhcC
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFLN 251 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l~ 251 (504)
++-++|.||||+||||+++.|+..++
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 34578999999999999999999884
No 204
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.21 E-value=0.009 Score=62.52 Aligned_cols=71 Identities=14% Similarity=0.182 Sum_probs=54.7
Q ss_pred CeEEEEecccccccccccccccccccccccccCcccccccccCCCcchhhHHHHHhhhhcCccccCCCceEEEEecCC--
Q 037859 278 KSILVIEDIDCSLDLTGQREKKKEKDEDKEEKNPIEKKEKEDGGSKKSKVTLSGLLNFIDGLWSASGEERIIVFTTNY-- 355 (504)
Q Consensus 278 ~~Il~iDeiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~lDg~~~~~~~~~ivI~tTN~-- 355 (504)
|.|++|||+|.+ +....+.||..|+.- ... ++|++||.
T Consensus 296 ~~VliIDEa~~l-----------------------------------~~~a~~aLlk~lEe~----~~~-~~il~tn~~~ 335 (456)
T 2c9o_A 296 PGVLFVDEVHML-----------------------------------DIECFTYLHRALESS----IAP-IVIFASNRGN 335 (456)
T ss_dssp ECEEEEESGGGC-----------------------------------BHHHHHHHHHHTTST----TCC-EEEEEECCSE
T ss_pred ceEEEEechhhc-----------------------------------CHHHHHHHHHHhhcc----CCC-EEEEecCCcc
Confidence 479999999986 234678888888753 233 55655543
Q ss_pred -----------CCCCChhhhcCCCceeEEEecCCCHHHHHHHHHHhc
Q 037859 356 -----------VDKLDPALIRRGRMDKHIEMSYCCFEAFKVLAKNYL 391 (504)
Q Consensus 356 -----------~e~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~~~l 391 (504)
++.|+|.++. ||.. +.|++++.++...+++...
T Consensus 336 ~~i~~~~~~~~~~~l~~~i~s--R~~~-~~~~~~~~~e~~~iL~~~~ 379 (456)
T 2c9o_A 336 CVIRGTEDITSPHGIPLDLLD--RVMI-IRTMLYTPQEMKQIIKIRA 379 (456)
T ss_dssp EECBTTSSCEEETTCCHHHHT--TEEE-EECCCCCHHHHHHHHHHHH
T ss_pred ccccccccccccccCChhHHh--hcce-eeCCCCCHHHHHHHHHHHH
Confidence 7789999999 9965 7999999999999998765
No 205
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.18 E-value=0.00082 Score=62.24 Aligned_cols=25 Identities=28% Similarity=0.211 Sum_probs=22.0
Q ss_pred ccccccCCCCCcHHHHHHHHHHhcC
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANFLN 251 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~l~ 251 (504)
.-++|.|+||+||||+++.+|..++
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3478899999999999999999764
No 206
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.18 E-value=0.002 Score=61.79 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=23.9
Q ss_pred cccccCCCCCcHHHHHHHHHHhcCCc
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFLNYD 253 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l~~~ 253 (504)
-+.|.||||+|||++++.||..++.+
T Consensus 24 iI~I~G~~GSGKST~a~~L~~~lg~~ 49 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQLLGQN 49 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhh
Confidence 47789999999999999999999876
No 207
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.18 E-value=0.0013 Score=64.54 Aligned_cols=29 Identities=31% Similarity=0.292 Sum_probs=23.8
Q ss_pred ccccccCCCCCcHHHHHHHHHHhc-CCcEE
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANFL-NYDVY 255 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~l-~~~i~ 255 (504)
+-++|.||||+||||+++.++..+ ++.++
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i 32 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEe
Confidence 457899999999999999999864 55444
No 208
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.15 E-value=0.0023 Score=63.52 Aligned_cols=34 Identities=21% Similarity=0.494 Sum_probs=28.8
Q ss_pred cccccccCCCCCcHHHHHHHHHHhcCCcEEEEec
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFLNYDVYDLEL 259 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~ 259 (504)
++-+++.||+|+|||+|+..+|..++..++..|.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 43 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPVELISVDS 43 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCT
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCCcEEeccc
Confidence 3457889999999999999999999877776654
No 209
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.14 E-value=0.0056 Score=57.04 Aligned_cols=25 Identities=20% Similarity=0.433 Sum_probs=21.7
Q ss_pred ccc--ccccCCCCCcHHHHHHHHHHhc
Q 037859 226 KKG--YLLYGPPGTGKSTMIAAMANFL 250 (504)
Q Consensus 226 ~rg--~LL~GPpGtGKTsla~aiA~~l 250 (504)
++| +.|.||+|+|||+|++.+|..+
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 445 7899999999999999999854
No 210
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.13 E-value=0.0026 Score=60.34 Aligned_cols=30 Identities=27% Similarity=0.430 Sum_probs=26.5
Q ss_pred cccccCCCCCcHHHHHHHHHHhcCCcEEEE
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFLNYDVYDL 257 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l 257 (504)
-+.|.|++|+|||++++.+|..+|+++++.
T Consensus 18 ~i~i~G~~gsGKst~~~~l~~~lg~~~~d~ 47 (236)
T 1q3t_A 18 QIAIDGPASSGKSTVAKIIAKDFGFTYLDT 47 (236)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCceecC
Confidence 367899999999999999999999887764
No 211
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.12 E-value=0.0016 Score=60.27 Aligned_cols=29 Identities=24% Similarity=0.351 Sum_probs=24.0
Q ss_pred ccccCCCCCcHHHHHHHHHHhc-CCcEEEE
Q 037859 229 YLLYGPPGTGKSTMIAAMANFL-NYDVYDL 257 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l-~~~i~~l 257 (504)
+.+.||||+||||+++.+++.+ +..++..
T Consensus 24 i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~ 53 (207)
T 2qt1_A 24 IGISGVTNSGKTTLAKNLQKHLPNCSVISQ 53 (207)
T ss_dssp EEEEESTTSSHHHHHHHHHTTSTTEEEEEG
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCcEEEeC
Confidence 6789999999999999999987 5554443
No 212
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.10 E-value=0.0061 Score=53.40 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=20.3
Q ss_pred cccccCCCCCcHHHHHHHHHHhc
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFL 250 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l 250 (504)
-+++.|++|+|||+|+.++.+.-
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998753
No 213
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.08 E-value=0.03 Score=59.40 Aligned_cols=41 Identities=7% Similarity=0.056 Sum_probs=34.0
Q ss_pred ceEEEEecCCCC--CCChhhhcCCCceeEEEecCCCHHHHHHHHH
Q 037859 346 ERIIVFTTNYVD--KLDPALIRRGRMDKHIEMSYCCFEAFKVLAK 388 (504)
Q Consensus 346 ~~ivI~tTN~~e--~Ld~ALlRpGR~d~~I~~~~p~~e~~~~i~~ 388 (504)
++.+|++|.++. .++..+.. -+...|.|...+..+.+.++.
T Consensus 332 GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lrv~s~~dsr~ilg 374 (512)
T 2ius_A 332 GIHLVLATQRPSVDVITGLIKA--NIPTRIAFTVSSKIDSRTILD 374 (512)
T ss_dssp TEEEEEEESCCCTTTSCHHHHH--HCCEEEEECCSSHHHHHHHHS
T ss_pred CcEEEEEecCCccccccHHHHh--hcCCeEEEEcCCHHHHHHhcC
Confidence 478889998886 68888877 788889999999988888764
No 214
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.01 E-value=0.0026 Score=63.93 Aligned_cols=33 Identities=18% Similarity=0.283 Sum_probs=27.7
Q ss_pred ccccccCCCCCcHHHHHHHHHHhcCCcEEEEec
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANFLNYDVYDLEL 259 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~ 259 (504)
+-+++.||+|+|||+++..||..++..++..|.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds 40 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDS 40 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceecccc
Confidence 357899999999999999999999876665543
No 215
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=95.98 E-value=0.0028 Score=58.88 Aligned_cols=29 Identities=17% Similarity=0.205 Sum_probs=26.8
Q ss_pred cccccCCCCCcHHHHHHHHHHhcCCcEEE
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFLNYDVYD 256 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l~~~i~~ 256 (504)
-+.+.||+|||||++++.+|..+|+++++
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 46789999999999999999999999885
No 216
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.97 E-value=0.0028 Score=57.46 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=21.9
Q ss_pred ccccccCCCCCcHHHHHHHHHHhcC
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANFLN 251 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~l~ 251 (504)
+-+.|.||+|+|||||++.|++.+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3478999999999999999998764
No 217
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.93 E-value=0.0024 Score=62.56 Aligned_cols=30 Identities=27% Similarity=0.246 Sum_probs=25.4
Q ss_pred ccccccCCCCCcHHHHHHHHHHhcCCcEEEE
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANFLNYDVYDL 257 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l 257 (504)
.-+.|.|+||+||||+++.++ .+|+++++.
T Consensus 76 ~iI~I~G~~GSGKSTva~~La-~lg~~~id~ 105 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK-NLGAYIIDS 105 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH-HHTCEEEEH
T ss_pred EEEEEECCCCCCHHHHHHHHH-HCCCcEEeh
Confidence 347899999999999999999 678876654
No 218
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.93 E-value=0.0032 Score=58.54 Aligned_cols=31 Identities=29% Similarity=0.428 Sum_probs=25.3
Q ss_pred cccccCCCCCcHHHHHHHHHHhcC----CcEEEEe
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFLN----YDVYDLE 258 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l~----~~i~~l~ 258 (504)
-++|.|+||+||||+++.++..++ .+.+.++
T Consensus 27 ~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~ 61 (211)
T 1m7g_A 27 TIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 61 (211)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccccCCcEEEEC
Confidence 377899999999999999999774 4566554
No 219
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.92 E-value=0.0027 Score=58.35 Aligned_cols=23 Identities=30% Similarity=0.366 Sum_probs=21.0
Q ss_pred cccccCCCCCcHHHHHHHHHHhc
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFL 250 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l 250 (504)
-+.|.||+|+||||+++.|++.+
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 36789999999999999999987
No 220
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.91 E-value=0.0019 Score=66.90 Aligned_cols=31 Identities=29% Similarity=0.312 Sum_probs=26.0
Q ss_pred cccccccCCCCCcHHHHHHHHHHhcCCcEEE
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFLNYDVYD 256 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~ 256 (504)
+.-++|.||||+||||+++.++..+++.++.
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~~~~~i~ 288 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSAGYVHVN 288 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGGTCEECC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhcCcEEEc
Confidence 4457889999999999999999998765543
No 221
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.90 E-value=0.016 Score=50.16 Aligned_cols=22 Identities=23% Similarity=0.406 Sum_probs=19.7
Q ss_pred cccccCCCCCcHHHHHHHHHHh
Q 037859 228 GYLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~ 249 (504)
-+++.|++|+|||+|+.++++.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999864
No 222
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.85 E-value=0.021 Score=49.60 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=19.8
Q ss_pred cccccCCCCCcHHHHHHHHHHh
Q 037859 228 GYLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~ 249 (504)
-+++.|++|+|||+|+.++.+.
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999864
No 223
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.84 E-value=0.0035 Score=62.25 Aligned_cols=32 Identities=25% Similarity=0.282 Sum_probs=26.8
Q ss_pred cccccCCCCCcHHHHHHHHHHhcCCcEEEEec
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFLNYDVYDLEL 259 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~ 259 (504)
-+++.||+|+|||+|+..+|..++..++..|.
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 36 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRLNGEVISGDS 36 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTTTEEEEECCG
T ss_pred EEEEECCCcCCHHHHHHHHHHhCccceeecCc
Confidence 46789999999999999999999876665543
No 224
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.84 E-value=0.0034 Score=57.60 Aligned_cols=24 Identities=25% Similarity=0.635 Sum_probs=21.3
Q ss_pred cccccCCCCCcHHHHHHHHHHhcC
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFLN 251 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l~ 251 (504)
-+.|.||+|+||||+++.|++.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhhCC
Confidence 367899999999999999999864
No 225
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.83 E-value=0.0086 Score=52.34 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=19.6
Q ss_pred cccccCCCCCcHHHHHHHHHHh
Q 037859 228 GYLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~ 249 (504)
-+++.|++|+|||+|+.++.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999864
No 226
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.83 E-value=0.0052 Score=56.43 Aligned_cols=26 Identities=31% Similarity=0.497 Sum_probs=22.7
Q ss_pred ccccccCCCCCcHHHHHHHHHHhcCC
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANFLNY 252 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~l~~ 252 (504)
|.++|.||+|+|||||++.|.....-
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~ 27 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCC
Confidence 66899999999999999999887643
No 227
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.82 E-value=0.011 Score=70.97 Aligned_cols=65 Identities=12% Similarity=0.216 Sum_probs=46.8
Q ss_pred cccccccCCCCCcHHHHHHHHHHh---cCCcEEEEeccccCC---------------------hHHHHHHHHh---ccCC
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANF---LNYDVYDLELTTVQD---------------------NSELRSLLID---TSSK 278 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~---l~~~i~~l~~~~~~~---------------------~~~l~~l~~~---~~~~ 278 (504)
++.++|+||||||||+||.++|.. .+..+++++...... ...+.+++.. ...+
T Consensus 34 G~i~lI~G~pGsGKT~LAlqla~~~~~~G~~vlYI~te~~~~~l~~~~lg~dl~~i~i~~p~t~e~l~~ll~~L~~~~~~ 113 (1706)
T 3cmw_A 34 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAV 113 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhCCCceEEEEecCccHHHHHHhhccCccceeeeccCcHHHHHHHHHHHHhccCC
Confidence 345899999999999999998765 367788887765321 2333343333 2568
Q ss_pred eEEEEecccccc
Q 037859 279 SILVIEDIDCSL 290 (504)
Q Consensus 279 ~Il~iDeiD~~~ 290 (504)
.+|+||++..++
T Consensus 114 ~LVVIDSLt~L~ 125 (1706)
T 3cmw_A 114 DVIVVDSVAALT 125 (1706)
T ss_dssp SEEEESCSTTCC
T ss_pred CEEEEcchhhhc
Confidence 999999999875
No 228
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.81 E-value=0.0053 Score=57.11 Aligned_cols=31 Identities=23% Similarity=0.155 Sum_probs=24.3
Q ss_pred cccccCCCCCcHHHHHHHHHHhc---CCcEEEEe
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFL---NYDVYDLE 258 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~ 258 (504)
-++|+||||+|||+|++.+|..+ +..++.++
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 37899999999999999999654 44555544
No 229
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.81 E-value=0.0033 Score=58.44 Aligned_cols=24 Identities=33% Similarity=0.397 Sum_probs=21.7
Q ss_pred cccccCCCCCcHHHHHHHHHHhcC
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFLN 251 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l~ 251 (504)
-+.|.||+|+||||+++.|+..+.
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSTT
T ss_pred EEEEECcCCCCHHHHHHHHHhhCC
Confidence 377899999999999999999875
No 230
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.79 E-value=0.0091 Score=55.10 Aligned_cols=32 Identities=22% Similarity=0.426 Sum_probs=25.6
Q ss_pred ccccccCCCCCcHH-HHHHHHHHhc--CCcEEEEe
Q 037859 227 KGYLLYGPPGTGKS-TMIAAMANFL--NYDVYDLE 258 (504)
Q Consensus 227 rg~LL~GPpGtGKT-sla~aiA~~l--~~~i~~l~ 258 (504)
+-+++|||.|+||| .|.+++.++. +..++.+.
T Consensus 21 ~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~k 55 (195)
T 1w4r_A 21 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK 55 (195)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEc
Confidence 34788999999999 8999987755 66777665
No 231
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.78 E-value=0.0078 Score=55.50 Aligned_cols=32 Identities=19% Similarity=0.292 Sum_probs=25.9
Q ss_pred ccccCCCCCcHHHHHHHHHHhc---CCcEEEEecc
Q 037859 229 YLLYGPPGTGKSTMIAAMANFL---NYDVYDLELT 260 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~ 260 (504)
+.|.||+|+||||+++.++..+ +.+++.++..
T Consensus 25 i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d 59 (201)
T 1rz3_A 25 LGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD 59 (201)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccC
Confidence 6789999999999999999876 5666665443
No 232
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.76 E-value=0.013 Score=57.79 Aligned_cols=34 Identities=26% Similarity=0.422 Sum_probs=26.8
Q ss_pred ccccccCCCCCcHHHHHHHHHHhc----CCcEEEEecc
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANFL----NYDVYDLELT 260 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~l----~~~i~~l~~~ 260 (504)
+-++|.||+|+||||++..+|..+ |..+..+++.
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D 143 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTD 143 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 457899999999999999999765 5566666543
No 233
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.75 E-value=0.0041 Score=56.63 Aligned_cols=25 Identities=32% Similarity=0.554 Sum_probs=21.9
Q ss_pred ccccccCCCCCcHHHHHHHHHHhcC
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANFLN 251 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~l~ 251 (504)
+-+.|.||+|+||||+++.|++.+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4577899999999999999998764
No 234
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.74 E-value=0.026 Score=50.08 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=20.4
Q ss_pred ccccccCCCCCcHHHHHHHHHHh
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~ 249 (504)
.-+++.|++|+|||+|+.++.+.
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 35899999999999999999863
No 235
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=95.72 E-value=0.0013 Score=51.39 Aligned_cols=46 Identities=11% Similarity=-0.188 Sum_probs=32.9
Q ss_pred cCCCHHHHHHHHHHhcCcCCcchHHHHhcCccCC-CCCHHHHHHhhC
Q 037859 376 SYCCFEAFKVLAKNYLDIDSHELYAVIESMPAET-NMTPADVAENLM 421 (504)
Q Consensus 376 ~~p~~e~~~~i~~~~l~~~~~~~~~~i~~l~~~~-~~s~a~i~~~l~ 421 (504)
|.|+.++|..|++.|+.........++..++..+ |||+|||..++.
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~ 47 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCT 47 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHH
Confidence 6899999999999998754332122344455544 999999987654
No 236
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.71 E-value=0.011 Score=53.37 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=20.3
Q ss_pred ccccccCCCCCcHHHHHHHHHHh
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~ 249 (504)
--++|.|++|+|||+|+.++.+.
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 35899999999999999999873
No 237
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.71 E-value=0.017 Score=51.49 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=19.7
Q ss_pred cccccCCCCCcHHHHHHHHHHh
Q 037859 228 GYLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~ 249 (504)
-+++.|++|+|||+|+.++.+.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999999864
No 238
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=95.69 E-value=0.0057 Score=66.73 Aligned_cols=48 Identities=29% Similarity=0.380 Sum_probs=35.0
Q ss_pred ccChhHHHHHHHhhcc-cccccCCCCCcHHHHHHHHHHhc----CCcEEEEec
Q 037859 212 AMETKKKEEIKKDLKK-GYLLYGPPGTGKSTMIAAMANFL----NYDVYDLEL 259 (504)
Q Consensus 212 ~~~~~~k~~i~~~l~r-g~LL~GPpGtGKTsla~aiA~~l----~~~i~~l~~ 259 (504)
.+++.+++.+...+.+ -+++.||||||||+++..++..+ +..+..+..
T Consensus 180 ~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~ 232 (624)
T 2gk6_A 180 DLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAP 232 (624)
T ss_dssp CCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEES
T ss_pred CCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 4678888888776644 46889999999999988877654 344554433
No 239
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.67 E-value=0.03 Score=50.79 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=19.8
Q ss_pred cccccCCCCCcHHHHHHHHHHh
Q 037859 228 GYLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~ 249 (504)
-+++.|++|+|||+|+.++.+.
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 240
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.67 E-value=0.019 Score=51.32 Aligned_cols=23 Identities=22% Similarity=0.433 Sum_probs=20.3
Q ss_pred ccccccCCCCCcHHHHHHHHHHh
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~ 249 (504)
--++|.|++|+|||+|+.++.+.
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999863
No 241
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.67 E-value=0.014 Score=51.80 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=19.8
Q ss_pred cccccCCCCCcHHHHHHHHHHh
Q 037859 228 GYLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~ 249 (504)
-+++.|++|+|||+|+.++.+.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
No 242
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.66 E-value=0.011 Score=51.70 Aligned_cols=20 Identities=40% Similarity=0.728 Sum_probs=18.2
Q ss_pred ccccCCCCCcHHHHHHHHHH
Q 037859 229 YLLYGPPGTGKSTMIAAMAN 248 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~ 248 (504)
+++.|+||+|||+|+.++.+
T Consensus 5 i~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEESTTSSHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHcC
Confidence 68999999999999999864
No 243
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.65 E-value=0.018 Score=50.15 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=18.8
Q ss_pred ccccCCCCCcHHHHHHHHHHh
Q 037859 229 YLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~ 249 (504)
+++.|++|+|||+|+.++.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 678999999999999999753
No 244
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.63 E-value=0.016 Score=51.21 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=20.4
Q ss_pred ccccccCCCCCcHHHHHHHHHHh
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~ 249 (504)
.-+++.|++|+|||+|+.++.+.
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999864
No 245
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.62 E-value=0.014 Score=52.65 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=20.4
Q ss_pred ccccccCCCCCcHHHHHHHHHHh
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~ 249 (504)
--+++.|++|+|||+|+.++.+.
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35899999999999999999864
No 246
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.61 E-value=0.0048 Score=57.87 Aligned_cols=23 Identities=35% Similarity=0.665 Sum_probs=21.1
Q ss_pred cccccCCCCCcHHHHHHHHHHhc
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFL 250 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l 250 (504)
-+.|.||+|+|||||++.|++.+
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 37799999999999999999977
No 247
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.58 E-value=0.013 Score=51.09 Aligned_cols=21 Identities=24% Similarity=0.506 Sum_probs=19.3
Q ss_pred cccccCCCCCcHHHHHHHHHH
Q 037859 228 GYLLYGPPGTGKSTMIAAMAN 248 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~ 248 (504)
-+++.|++|+|||+|+.++.+
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999999986
No 248
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.58 E-value=0.0067 Score=58.72 Aligned_cols=22 Identities=50% Similarity=0.918 Sum_probs=20.5
Q ss_pred ccccCCCCCcHHHHHHHHHHhc
Q 037859 229 YLLYGPPGTGKSTMIAAMANFL 250 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l 250 (504)
++|.||+|+||||+++++++.+
T Consensus 28 v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 28 ILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp EEEECSTTCSHHHHHHHHHHHH
T ss_pred EEEECCCCccHHHHHHHHHHhC
Confidence 7899999999999999999876
No 249
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.58 E-value=0.0087 Score=60.68 Aligned_cols=45 Identities=38% Similarity=0.638 Sum_probs=32.9
Q ss_pred CCccccccccChhHHHHHHHhhccc-ccccCCCCCcHHHHHHHHHHhc
Q 037859 204 HPATFDTLAMETKKKEEIKKDLKKG-YLLYGPPGTGKSTMIAAMANFL 250 (504)
Q Consensus 204 ~p~~f~~~~~~~~~k~~i~~~l~rg-~LL~GPpGtGKTsla~aiA~~l 250 (504)
.+.+++++.+.+..+. +.. .++| +++.||+|+||||+.+++++.+
T Consensus 102 ~~~~l~~lg~~~~l~~-l~~-~~~g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 102 KVLTMEELGMGEVFKR-VSD-VPRGLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp SCCCTTTTTCCHHHHH-HHH-CSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCCHHHcCChHHHHH-HHh-CCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 4557888888663332 211 1555 7789999999999999999876
No 250
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.57 E-value=0.0099 Score=54.89 Aligned_cols=24 Identities=17% Similarity=0.466 Sum_probs=21.1
Q ss_pred ccccccCCCCCcHHHHHHHHHHhc
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANFL 250 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~l 250 (504)
.-++|.|+||+|||+|+.++++..
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999999998754
No 251
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.52 E-value=0.02 Score=51.46 Aligned_cols=22 Identities=23% Similarity=0.406 Sum_probs=20.1
Q ss_pred cccccCCCCCcHHHHHHHHHHh
Q 037859 228 GYLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~ 249 (504)
-+++.|++|+|||+|+.++++.
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 252
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.51 E-value=0.0039 Score=57.66 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=21.5
Q ss_pred ccccCCCCCcHHHHHHHHHHhcC
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLN 251 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~ 251 (504)
+.|.||+|+||||+++.|++.++
T Consensus 9 i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 9 IGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHG
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 66899999999999999999887
No 253
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.49 E-value=0.038 Score=49.46 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=20.3
Q ss_pred cccccCCCCCcHHHHHHHHHHhc
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFL 250 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l 250 (504)
-++|.|+||+|||+|++.+.+..
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 48999999999999999988654
No 254
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.48 E-value=0.0066 Score=57.62 Aligned_cols=29 Identities=24% Similarity=0.398 Sum_probs=25.0
Q ss_pred ccccCCCCCcHHHHHHHHHHhcCCcEEEE
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLNYDVYDL 257 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~~~i~~l 257 (504)
+=|.||||+|||++++.||..++++.+..
T Consensus 11 ~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 11 LILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred eeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 44789999999999999999999876643
No 255
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.47 E-value=0.015 Score=50.85 Aligned_cols=21 Identities=24% Similarity=0.566 Sum_probs=19.2
Q ss_pred cccccCCCCCcHHHHHHHHHH
Q 037859 228 GYLLYGPPGTGKSTMIAAMAN 248 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~ 248 (504)
-+++.|++|+|||+|+.++.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 378999999999999999986
No 256
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.45 E-value=0.011 Score=61.65 Aligned_cols=34 Identities=26% Similarity=0.373 Sum_probs=27.3
Q ss_pred ccccccCCCCCcHHHHHHHHHHhc---CCcEEEEecc
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANFL---NYDVYDLELT 260 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~ 260 (504)
+-+++.||||+|||+++..+|..+ |..+..+++.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 468899999999999999999876 4566665543
No 257
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.44 E-value=0.02 Score=50.42 Aligned_cols=22 Identities=32% Similarity=0.600 Sum_probs=19.4
Q ss_pred cccccCCCCCcHHHHHHHHHHh
Q 037859 228 GYLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~ 249 (504)
-+++.|+||+|||+|+.++.+.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 4789999999999999999753
No 258
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.42 E-value=0.005 Score=57.12 Aligned_cols=23 Identities=43% Similarity=0.658 Sum_probs=21.0
Q ss_pred ccccCCCCCcHHHHHHHHHHhcC
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLN 251 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~ 251 (504)
+.|.||+|+|||||++.|++.+.
T Consensus 25 v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 25 VALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp EEEECCTTSCTHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 66899999999999999999875
No 259
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.42 E-value=0.013 Score=51.02 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=19.6
Q ss_pred cccccCCCCCcHHHHHHHHHHh
Q 037859 228 GYLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~ 249 (504)
-+++.|+||+|||+|+.++.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999863
No 260
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.41 E-value=0.0069 Score=55.30 Aligned_cols=33 Identities=21% Similarity=0.236 Sum_probs=28.9
Q ss_pred ccccCCCCCcHHHHHHHHHHhcCCcEEEEecccc
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLNYDVYDLELTTV 262 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~ 262 (504)
+|++|++|+|||++|..+|.. +.+++++.....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~~ 34 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQI 34 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCCC
Confidence 588999999999999999988 888888877654
No 261
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.40 E-value=0.006 Score=56.25 Aligned_cols=25 Identities=32% Similarity=0.551 Sum_probs=22.0
Q ss_pred ccccccCCCCCcHHHHHHHHHHhcC
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANFLN 251 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~l~ 251 (504)
+-+.|.||+|+|||||++.|++.+.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4588999999999999999998753
No 262
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.40 E-value=0.026 Score=50.68 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=20.4
Q ss_pred ccccccCCCCCcHHHHHHHHHHh
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~ 249 (504)
--+++.|+||+|||+|+.++.+.
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999864
No 263
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.39 E-value=0.011 Score=61.09 Aligned_cols=47 Identities=30% Similarity=0.504 Sum_probs=35.3
Q ss_pred CccccccccChhHHHHHHHhh--ccc-ccccCCCCCcHHHHHHHHHHhcC
Q 037859 205 PATFDTLAMETKKKEEIKKDL--KKG-YLLYGPPGTGKSTMIAAMANFLN 251 (504)
Q Consensus 205 p~~f~~~~~~~~~k~~i~~~l--~rg-~LL~GPpGtGKTsla~aiA~~l~ 251 (504)
+..++++.+.+..+..+.+.+ +.| +++.||+|+||||+.+++++.+.
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~l~~~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHHHHTSSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred CCCHHHcCCCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 446788888876554443333 444 68999999999999999999885
No 264
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.38 E-value=0.0074 Score=65.57 Aligned_cols=31 Identities=32% Similarity=0.567 Sum_probs=28.5
Q ss_pred cccccCCCCCcHHHHHHHHHHhc---CCcEEEEe
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFL---NYDVYDLE 258 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~ 258 (504)
-++|.|+||+||||+++++|..+ |++++.++
T Consensus 54 lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lD 87 (630)
T 1x6v_B 54 TVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD 87 (630)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEES
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence 47899999999999999999999 99998885
No 265
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.37 E-value=0.0089 Score=56.25 Aligned_cols=32 Identities=28% Similarity=0.231 Sum_probs=24.6
Q ss_pred ccccCCCCCcHHHHHHHHHHhc---CCcEEEEecc
Q 037859 229 YLLYGPPGTGKSTMIAAMANFL---NYDVYDLELT 260 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~ 260 (504)
++|+||||+|||+++..+|... +.++++++..
T Consensus 26 ~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 26 VLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 7899999999999988887543 5566666543
No 266
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.37 E-value=0.0065 Score=56.30 Aligned_cols=26 Identities=27% Similarity=0.431 Sum_probs=22.7
Q ss_pred cccccccCCCCCcHHHHHHHHHHhcC
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFLN 251 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l~ 251 (504)
++-+.|.||+|+|||+|+++|++...
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 45578999999999999999998764
No 267
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.35 E-value=0.0027 Score=58.68 Aligned_cols=24 Identities=21% Similarity=0.407 Sum_probs=21.5
Q ss_pred ccccCCCCCcHHHHHHHHHHhcCC
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLNY 252 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~~ 252 (504)
+.|.||+|+||||+++.|+..++.
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHh
Confidence 578999999999999999998853
No 268
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.32 E-value=0.016 Score=58.47 Aligned_cols=25 Identities=20% Similarity=0.433 Sum_probs=22.4
Q ss_pred ccc--ccccCCCCCcHHHHHHHHHHhc
Q 037859 226 KKG--YLLYGPPGTGKSTMIAAMANFL 250 (504)
Q Consensus 226 ~rg--~LL~GPpGtGKTsla~aiA~~l 250 (504)
++| +.|+||||+|||+|+..+|...
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 555 7899999999999999999876
No 269
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.31 E-value=0.0064 Score=56.80 Aligned_cols=30 Identities=23% Similarity=0.339 Sum_probs=25.1
Q ss_pred HHHHhhccc--ccccCCCCCcHHHHHHHHHHh
Q 037859 220 EIKKDLKKG--YLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 220 ~i~~~l~rg--~LL~GPpGtGKTsla~aiA~~ 249 (504)
.++++++.| +.|.||.|+|||||+++|++.
T Consensus 14 ~~l~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 14 HYVDAIDTNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HHHHHHHHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred HHHHhccCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 456667556 778999999999999999985
No 270
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.28 E-value=0.0087 Score=59.31 Aligned_cols=25 Identities=40% Similarity=0.725 Sum_probs=22.6
Q ss_pred ccc--ccccCCCCCcHHHHHHHHHHhc
Q 037859 226 KKG--YLLYGPPGTGKSTMIAAMANFL 250 (504)
Q Consensus 226 ~rg--~LL~GPpGtGKTsla~aiA~~l 250 (504)
++| +.|+||+|+|||||++.|++.+
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 555 7899999999999999999987
No 271
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=95.27 E-value=0.0095 Score=66.80 Aligned_cols=39 Identities=31% Similarity=0.526 Sum_probs=31.4
Q ss_pred ccChhHHHHHHHhhccc-ccccCCCCCcHHHHHHHHHHhc
Q 037859 212 AMETKKKEEIKKDLKKG-YLLYGPPGTGKSTMIAAMANFL 250 (504)
Q Consensus 212 ~~~~~~k~~i~~~l~rg-~LL~GPpGtGKTsla~aiA~~l 250 (504)
.+++.+++.+...+.++ +++.||||||||+++..++..+
T Consensus 356 ~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 356 DLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp CCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 46888888888777544 6889999999999988877654
No 272
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.25 E-value=0.026 Score=48.87 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=19.7
Q ss_pred cccccCCCCCcHHHHHHHHHHh
Q 037859 228 GYLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~ 249 (504)
-+++.|++|+|||+|+.++++.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999864
No 273
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.25 E-value=0.0077 Score=57.04 Aligned_cols=29 Identities=38% Similarity=0.556 Sum_probs=24.3
Q ss_pred ccccCCCCCcHHHHHHHHHHhcC--CcEEEE
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLN--YDVYDL 257 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~--~~i~~l 257 (504)
+.|.||||+||||+++.++..++ .+++..
T Consensus 29 i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~ 59 (229)
T 4eaq_A 29 ITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 59 (229)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred EEEEcCCCCCHHHHHHHHHHHHhcCCCceee
Confidence 67889999999999999999986 455443
No 274
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=95.24 E-value=0.0068 Score=57.30 Aligned_cols=29 Identities=21% Similarity=0.197 Sum_probs=26.6
Q ss_pred cccccCCCCCcHHHHHHHHHHhcCCcEEE
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFLNYDVYD 256 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l~~~i~~ 256 (504)
-+.+.|++|||||++++.+|..+|+++|+
T Consensus 16 iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 16 IITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 46789999999999999999999999875
No 275
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.19 E-value=0.0077 Score=55.77 Aligned_cols=23 Identities=30% Similarity=0.563 Sum_probs=21.2
Q ss_pred ccccCCCCCcHHHHHHHHHHhcC
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLN 251 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~ 251 (504)
+.|.||+|+|||||+++|++.+.
T Consensus 23 ~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 23 VVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp EEEECSTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHhhCC
Confidence 77899999999999999999874
No 276
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.19 E-value=0.017 Score=52.11 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=20.5
Q ss_pred cccccCCCCCcHHHHHHHHHHhc
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFL 250 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l 250 (504)
-++|.|++|+|||+|+.++.+.-
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 48999999999999999998753
No 277
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.16 E-value=0.0071 Score=57.08 Aligned_cols=19 Identities=47% Similarity=0.646 Sum_probs=18.2
Q ss_pred ccccCCCCCcHHHHHHHHH
Q 037859 229 YLLYGPPGTGKSTMIAAMA 247 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA 247 (504)
+.|.||+|+|||+|++.++
T Consensus 33 ~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 33 VLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHH
Confidence 8899999999999999998
No 278
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.13 E-value=0.0084 Score=53.44 Aligned_cols=25 Identities=32% Similarity=0.461 Sum_probs=22.4
Q ss_pred ccc--ccccCCCCCcHHHHHHHHHHhc
Q 037859 226 KKG--YLLYGPPGTGKSTMIAAMANFL 250 (504)
Q Consensus 226 ~rg--~LL~GPpGtGKTsla~aiA~~l 250 (504)
+.| +.|.||.|+|||||+++|++.+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 445 7799999999999999999987
No 279
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.11 E-value=0.018 Score=57.19 Aligned_cols=21 Identities=19% Similarity=0.213 Sum_probs=19.5
Q ss_pred ccccCCCCCcHHHHHHHHHHh
Q 037859 229 YLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~ 249 (504)
++++||||+|||+++..+|..
T Consensus 101 ~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 101 TEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999865
No 280
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.10 E-value=0.028 Score=51.08 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=19.8
Q ss_pred cccccCCCCCcHHHHHHHHHHh
Q 037859 228 GYLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~ 249 (504)
-+++.|++|+|||+|+.++.+.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999764
No 281
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.09 E-value=0.0082 Score=53.89 Aligned_cols=18 Identities=39% Similarity=0.606 Sum_probs=16.3
Q ss_pred ccccCCCCCcHHHHHHHH
Q 037859 229 YLLYGPPGTGKSTMIAAM 246 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~ai 246 (504)
+.|.||+|+|||||++++
T Consensus 12 ~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 12 VVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp EEEECCTTSCHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 779999999999999953
No 282
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.05 E-value=0.017 Score=51.08 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=19.7
Q ss_pred cccccCCCCCcHHHHHHHHHHh
Q 037859 228 GYLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~ 249 (504)
-+++.|+||+|||+|+.++.+.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999853
No 283
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.04 E-value=0.022 Score=50.29 Aligned_cols=21 Identities=19% Similarity=0.460 Sum_probs=19.0
Q ss_pred cccccCCCCCcHHHHHHHHHH
Q 037859 228 GYLLYGPPGTGKSTMIAAMAN 248 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~ 248 (504)
-+++.|+||+|||+|+.++.+
T Consensus 8 ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHG
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 478999999999999999975
No 284
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.00 E-value=0.009 Score=54.89 Aligned_cols=23 Identities=43% Similarity=0.794 Sum_probs=20.8
Q ss_pred cccccCCCCCcHHHHHHHHHHhc
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFL 250 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l 250 (504)
-+.|.||+|+||||+++.||+.+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 36789999999999999999876
No 285
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=94.99 E-value=0.042 Score=50.52 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=19.8
Q ss_pred cccccCCCCCcHHHHHHHHHHh
Q 037859 228 GYLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~ 249 (504)
-++|.|++|+|||+|+.++.+.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999853
No 286
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=94.98 E-value=0.018 Score=51.41 Aligned_cols=22 Identities=32% Similarity=0.587 Sum_probs=19.8
Q ss_pred cccccCCCCCcHHHHHHHHHHh
Q 037859 228 GYLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~ 249 (504)
-+++.|++|+|||+|+.++.+.
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5889999999999999999864
No 287
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.94 E-value=0.028 Score=50.04 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=19.9
Q ss_pred cccccCCCCCcHHHHHHHHHHh
Q 037859 228 GYLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~ 249 (504)
-+++.|++|+|||+|+.++.+.
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999864
No 288
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=94.94 E-value=0.013 Score=65.63 Aligned_cols=49 Identities=22% Similarity=0.421 Sum_probs=36.1
Q ss_pred ccChhHHHHHHHhhccc-ccccCCCCCcHHHHHHHHHHhc----CCcEEEEecc
Q 037859 212 AMETKKKEEIKKDLKKG-YLLYGPPGTGKSTMIAAMANFL----NYDVYDLELT 260 (504)
Q Consensus 212 ~~~~~~k~~i~~~l~rg-~LL~GPpGtGKTsla~aiA~~l----~~~i~~l~~~ 260 (504)
.+++.+++.+...+.++ +|+.||||||||+++..++..+ +..+..+..+
T Consensus 360 ~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~t 413 (802)
T 2xzl_A 360 QLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPS 413 (802)
T ss_dssp CCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred cCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCc
Confidence 47888888888777555 6889999999999887776543 4555555443
No 289
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.93 E-value=0.021 Score=51.66 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=20.3
Q ss_pred ccccccCCCCCcHHHHHHHHHHh
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~ 249 (504)
--+++.|++|+|||+|+.++.+.
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 35899999999999999999864
No 290
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=94.93 E-value=0.029 Score=51.03 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=20.3
Q ss_pred ccccccCCCCCcHHHHHHHHHHh
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~ 249 (504)
.-+++.|++|+|||+|+.++.+.
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 45899999999999999999753
No 291
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.92 E-value=0.0092 Score=61.26 Aligned_cols=31 Identities=26% Similarity=0.393 Sum_probs=26.4
Q ss_pred cccccCCCCCcHHHHHHHHHHhcCCcEEEEe
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFLNYDVYDLE 258 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~ 258 (504)
-+++.||+|+|||+|+..+|..++..++..|
T Consensus 4 ~i~i~GptgsGKttla~~La~~~~~~iis~D 34 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQKFNGEVINSD 34 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHTEEEEECC
T ss_pred EEEEECcchhhHHHHHHHHHHHCCCeEeecC
Confidence 4678999999999999999999987666543
No 292
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=94.92 E-value=0.039 Score=50.40 Aligned_cols=23 Identities=17% Similarity=0.264 Sum_probs=20.0
Q ss_pred ccccccCCCCCcHHHHHHHHHHh
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~ 249 (504)
--++|.|++|+|||+|+..+.+.
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhhC
Confidence 35899999999999999999753
No 293
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.88 E-value=0.014 Score=51.08 Aligned_cols=20 Identities=35% Similarity=0.630 Sum_probs=18.2
Q ss_pred ccccCCCCCcHHHHHHHHHH
Q 037859 229 YLLYGPPGTGKSTMIAAMAN 248 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~ 248 (504)
+++.|+||+|||+|+.++.+
T Consensus 5 i~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 68899999999999999964
No 294
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.86 E-value=0.016 Score=54.46 Aligned_cols=32 Identities=31% Similarity=0.270 Sum_probs=24.6
Q ss_pred ccccCCCCCcHHHHHHHHHHh----cCCcEEEEecc
Q 037859 229 YLLYGPPGTGKSTMIAAMANF----LNYDVYDLELT 260 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~----l~~~i~~l~~~ 260 (504)
++++|+||+|||+++..+|.. .+.+++++++.
T Consensus 33 ~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E 68 (251)
T 2zts_A 33 VLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc
Confidence 889999999999999876543 36677666543
No 295
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.84 E-value=0.0089 Score=54.14 Aligned_cols=27 Identities=30% Similarity=0.404 Sum_probs=23.4
Q ss_pred cccccccCCCCCcHHHHHHHHHHhcCCc
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFLNYD 253 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l~~~ 253 (504)
.+|+||.||+|+|||++|.++... |..
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r-G~~ 42 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR-GHQ 42 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT-TCE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc-CCe
Confidence 579999999999999999999874 443
No 296
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=94.81 E-value=0.011 Score=53.24 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=20.2
Q ss_pred cccccCCCCCcHHHHHHHHHHhc
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFL 250 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l 250 (504)
-+++.|++|+|||+|+.++.+.-
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999997643
No 297
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=94.81 E-value=0.021 Score=51.50 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=20.2
Q ss_pred ccccccCCCCCcHHHHHHHHHHh
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~ 249 (504)
--+++.|++|+|||+|+.++.+.
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHcC
Confidence 34899999999999999999863
No 298
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.79 E-value=0.012 Score=55.44 Aligned_cols=24 Identities=33% Similarity=0.584 Sum_probs=21.7
Q ss_pred cccccCCCCCcHHHHHHHHHHhcC
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFLN 251 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l~ 251 (504)
-+.|.||+|+|||||+++|++.+.
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhccCC
Confidence 477899999999999999999875
No 299
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.76 E-value=0.023 Score=50.92 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=19.8
Q ss_pred cccccCCCCCcHHHHHHHHHHh
Q 037859 228 GYLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~ 249 (504)
-+++.|+||+|||+|+.++.+.
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999999864
No 300
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.73 E-value=0.0097 Score=57.81 Aligned_cols=23 Identities=30% Similarity=0.365 Sum_probs=20.3
Q ss_pred cccccCCCCCcHHHHHHHHHHhc
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFL 250 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l 250 (504)
-++|+||||+|||+|+..+|..+
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 38899999999999999998654
No 301
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=94.72 E-value=0.026 Score=51.39 Aligned_cols=23 Identities=13% Similarity=0.247 Sum_probs=20.5
Q ss_pred ccccccCCCCCcHHHHHHHHHHh
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~ 249 (504)
.-++|.|++|+|||+|+.++.+.
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCcCHHHHHHHHHhC
Confidence 35899999999999999999874
No 302
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.72 E-value=0.034 Score=58.19 Aligned_cols=22 Identities=27% Similarity=0.557 Sum_probs=19.9
Q ss_pred ccccCCCCCcHHHHHHHHHHhc
Q 037859 229 YLLYGPPGTGKSTMIAAMANFL 250 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l 250 (504)
.+|+||||+|||+|+..++...
T Consensus 154 ~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 154 IGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp EEEECCSSSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCccHHHHHHHhhh
Confidence 8899999999999999987654
No 303
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=94.71 E-value=0.017 Score=62.84 Aligned_cols=37 Identities=30% Similarity=0.385 Sum_probs=28.4
Q ss_pred ChhHHHHHHHhh-cccccccCCCCCcHHHHHHHHHHhc
Q 037859 214 ETKKKEEIKKDL-KKGYLLYGPPGTGKSTMIAAMANFL 250 (504)
Q Consensus 214 ~~~~k~~i~~~l-~rg~LL~GPpGtGKTsla~aiA~~l 250 (504)
.+.+++.+...+ .+-+++.||||||||+++.++...+
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHH
Confidence 466777776666 4457889999999999988876554
No 304
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.70 E-value=0.024 Score=53.69 Aligned_cols=32 Identities=25% Similarity=0.326 Sum_probs=22.8
Q ss_pred cc--ccccCCCCCcHHHHHHHHHHhc-------CCcEEEEe
Q 037859 227 KG--YLLYGPPGTGKSTMIAAMANFL-------NYDVYDLE 258 (504)
Q Consensus 227 rg--~LL~GPpGtGKTsla~aiA~~l-------~~~i~~l~ 258 (504)
+| +.|.||+|+||||+++.++..+ +++++...
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~r 64 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTR 64 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeec
Confidence 55 5678999999999999999887 66665443
No 305
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.69 E-value=0.043 Score=49.26 Aligned_cols=22 Identities=14% Similarity=0.267 Sum_probs=19.9
Q ss_pred ccccccCCCCCcHHHHHHHHHH
Q 037859 227 KGYLLYGPPGTGKSTMIAAMAN 248 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~ 248 (504)
.-+++.|++|+|||+|+.++.+
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 3589999999999999999975
No 306
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=94.65 E-value=0.031 Score=51.30 Aligned_cols=23 Identities=17% Similarity=0.291 Sum_probs=20.2
Q ss_pred ccccccCCCCCcHHHHHHHHHHh
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~ 249 (504)
.-+++.|++|+|||+|+.++.+.
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 34889999999999999999864
No 307
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.65 E-value=0.031 Score=50.42 Aligned_cols=21 Identities=24% Similarity=0.613 Sum_probs=19.4
Q ss_pred cccccCCCCCcHHHHHHHHHH
Q 037859 228 GYLLYGPPGTGKSTMIAAMAN 248 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~ 248 (504)
-+++.|++|+|||+|+.++.+
T Consensus 10 ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHc
Confidence 478999999999999999986
No 308
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.65 E-value=0.019 Score=50.60 Aligned_cols=22 Identities=18% Similarity=0.359 Sum_probs=19.7
Q ss_pred cccccCCCCCcHHHHHHHHHHh
Q 037859 228 GYLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~ 249 (504)
-+++.|++|+|||+|+.++.+.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4889999999999999999853
No 309
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.65 E-value=0.017 Score=61.59 Aligned_cols=33 Identities=15% Similarity=0.302 Sum_probs=26.0
Q ss_pred cccccccCCCCCcHHHHHHHHHHhc---CCcEEEEe
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFL---NYDVYDLE 258 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~ 258 (504)
+.-++|.|+||+|||++++.+|.++ +.+...++
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s 70 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFN 70 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEec
Confidence 3458899999999999999999988 44444443
No 310
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.64 E-value=0.019 Score=50.78 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=20.5
Q ss_pred ccccccCCCCCcHHHHHHHHHHh
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~ 249 (504)
.-+++.|++|+|||+|+.++.+.
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999875
No 311
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.64 E-value=0.035 Score=50.27 Aligned_cols=23 Identities=22% Similarity=0.466 Sum_probs=20.4
Q ss_pred ccccccCCCCCcHHHHHHHHHHh
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~ 249 (504)
--+++.|++|+|||+|+.++.+.
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999864
No 312
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=94.62 E-value=0.073 Score=59.46 Aligned_cols=33 Identities=27% Similarity=0.471 Sum_probs=23.7
Q ss_pred HHHHHHHhhc--ccccccCCCCCcHHHHHHHHHHh
Q 037859 217 KKEEIKKDLK--KGYLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 217 ~k~~i~~~l~--rg~LL~GPpGtGKTsla~aiA~~ 249 (504)
+++.|...+. ..+++.||+|+|||+++..++..
T Consensus 98 q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 98 QRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp GHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4455555553 34899999999999977766543
No 313
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.60 E-value=0.045 Score=48.30 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=19.8
Q ss_pred cccccCCCCCcHHHHHHHHHHh
Q 037859 228 GYLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~ 249 (504)
-+++.|++|+|||+|+.++.+.
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5889999999999999999764
No 314
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=94.58 E-value=0.035 Score=65.69 Aligned_cols=23 Identities=43% Similarity=0.751 Sum_probs=20.9
Q ss_pred cccccCCCCCcHHHHHHHHHHhc
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFL 250 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l 250 (504)
-+-++||+|+|||||++++.+..
T Consensus 1107 ~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1107 TLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp EEEEECSTTSSTTSHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCc
Confidence 38899999999999999998866
No 315
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.57 E-value=0.016 Score=50.70 Aligned_cols=21 Identities=29% Similarity=0.518 Sum_probs=19.3
Q ss_pred cccccCCCCCcHHHHHHHHHH
Q 037859 228 GYLLYGPPGTGKSTMIAAMAN 248 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~ 248 (504)
-+++.|++|+|||+|+.++.+
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 488999999999999999975
No 316
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.57 E-value=0.011 Score=57.81 Aligned_cols=31 Identities=26% Similarity=0.171 Sum_probs=24.7
Q ss_pred ccccCCCCCcHHHHHHHHHHhc----CCcEEEEec
Q 037859 229 YLLYGPPGTGKSTMIAAMANFL----NYDVYDLEL 259 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l----~~~i~~l~~ 259 (504)
++|.||||+|||+|++.+|..+ |.++..++.
T Consensus 38 ~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~ 72 (296)
T 1cr0_A 38 IMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML 72 (296)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 7899999999999999998865 445655543
No 317
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.55 E-value=0.014 Score=55.64 Aligned_cols=28 Identities=21% Similarity=0.309 Sum_probs=23.7
Q ss_pred ccc--ccccCCCCCcHHHHHHHHHHhcCCc
Q 037859 226 KKG--YLLYGPPGTGKSTMIAAMANFLNYD 253 (504)
Q Consensus 226 ~rg--~LL~GPpGtGKTsla~aiA~~l~~~ 253 (504)
++| +-|.||+|+||||+++.|++.+|..
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 445 5689999999999999999988754
No 318
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=94.54 E-value=0.028 Score=50.51 Aligned_cols=22 Identities=23% Similarity=0.406 Sum_probs=20.0
Q ss_pred cccccCCCCCcHHHHHHHHHHh
Q 037859 228 GYLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~ 249 (504)
-+++.|++|+|||+|+.++.+.
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999999875
No 319
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.54 E-value=0.033 Score=52.05 Aligned_cols=30 Identities=37% Similarity=0.371 Sum_probs=24.4
Q ss_pred ccccCCCCCcHHHHHHHHHHhc---CCcEEEEe
Q 037859 229 YLLYGPPGTGKSTMIAAMANFL---NYDVYDLE 258 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~ 258 (504)
+.|.||+|+||||+++.++..+ +++++...
T Consensus 9 i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~ 41 (213)
T 4edh_A 9 VTLEGPEGAGKSTNRDYLAERLRERGIEVQLTR 41 (213)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCccccc
Confidence 5678999999999999999887 45665443
No 320
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.51 E-value=0.012 Score=60.08 Aligned_cols=43 Identities=40% Similarity=0.637 Sum_probs=29.3
Q ss_pred CccccccccChhHHHHHHHhh-ccc-ccccCCCCCcHHHHHHHHHHhc
Q 037859 205 PATFDTLAMETKKKEEIKKDL-KKG-YLLYGPPGTGKSTMIAAMANFL 250 (504)
Q Consensus 205 p~~f~~~~~~~~~k~~i~~~l-~rg-~LL~GPpGtGKTsla~aiA~~l 250 (504)
+.+++++.+++..++ +. + +.+ +++.||+|+||||++++|++.+
T Consensus 116 ~~~l~~lg~~~~l~~-l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 116 IPEFKKLGLPDKVLE-LC--HRKMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp CCCHHHHCCCSSHHH-HT--TSSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCHhHcCCCHHHHH-Hh--hcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 345666665543222 21 2 233 7899999999999999999876
No 321
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.48 E-value=0.015 Score=52.28 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=20.9
Q ss_pred ccccCCCCCcHHHHHHHHHHhcC
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLN 251 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~ 251 (504)
.+|+||.|+|||++++||+..++
T Consensus 29 ~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 29 TAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEECTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHc
Confidence 57899999999999999998775
No 322
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=94.44 E-value=0.014 Score=46.49 Aligned_cols=47 Identities=13% Similarity=-0.174 Sum_probs=33.1
Q ss_pred ecCCCHHHHHHHHHHhcCcCCcchHHHHhcCccCC-CCCHHHHHHhhC
Q 037859 375 MSYCCFEAFKVLAKNYLDIDSHELYAVIESMPAET-NMTPADVAENLM 421 (504)
Q Consensus 375 ~~~p~~e~~~~i~~~~l~~~~~~~~~~i~~l~~~~-~~s~a~i~~~l~ 421 (504)
-++|+.++|.+|++.++.........++..+++.+ |||+|||..++.
T Consensus 8 ~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~ 55 (86)
T 2krk_A 8 HSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCT 55 (86)
T ss_dssp CCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHH
Confidence 46899999999999999754322112234455545 999999987644
No 323
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=94.43 E-value=0.028 Score=50.87 Aligned_cols=22 Identities=18% Similarity=0.536 Sum_probs=19.4
Q ss_pred ccccccCCCCCcHHHHHHHHHH
Q 037859 227 KGYLLYGPPGTGKSTMIAAMAN 248 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~ 248 (504)
--+++.|++|+|||+|+.++.+
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3489999999999999999964
No 324
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.41 E-value=0.027 Score=51.75 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=20.3
Q ss_pred ccccccCCCCCcHHHHHHHHHHh
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~ 249 (504)
.-++|.|++|+|||+|+.++.+.
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 35899999999999999999864
No 325
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.40 E-value=0.0098 Score=55.96 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=14.5
Q ss_pred cccccCCCCCcHHHHHHHHH-Hhc
Q 037859 228 GYLLYGPPGTGKSTMIAAMA-NFL 250 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA-~~l 250 (504)
-+.|.||+|+||||+++.|+ +.+
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp EEEEECSCC----CHHHHHHC---
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 36789999999999999999 775
No 326
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.40 E-value=0.017 Score=62.33 Aligned_cols=30 Identities=30% Similarity=0.270 Sum_probs=26.8
Q ss_pred ccccCCCCCcHHHHHHHHHHhcC----CcEEEEe
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLN----YDVYDLE 258 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~----~~i~~l~ 258 (504)
++|.|+||+||||++++++..++ .+++.++
T Consensus 399 I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD 432 (573)
T 1m8p_A 399 IFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLL 432 (573)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred EEeecCCCCCHHHHHHHHHHHhcccCCceEEEEC
Confidence 67899999999999999999986 6777776
No 327
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.40 E-value=0.027 Score=50.76 Aligned_cols=32 Identities=16% Similarity=0.227 Sum_probs=25.8
Q ss_pred cccccCCCCCcHHHHHHHHHHhc---CCcEEEEec
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFL---NYDVYDLEL 259 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~ 259 (504)
-+.+.|++|+|||+++..++..+ ++.+..+..
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~ 40 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKH 40 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEe
Confidence 46789999999999999999876 566665554
No 328
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.40 E-value=0.022 Score=59.10 Aligned_cols=35 Identities=29% Similarity=0.356 Sum_probs=27.4
Q ss_pred cccccccCCCCCcHHHHHHHHHHhc---CCcEEEEecc
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFL---NYDVYDLELT 260 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~ 260 (504)
++-+++.||+|+||||++..+|..+ +..+..+++.
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D 134 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAAD 134 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecC
Confidence 3457889999999999999999776 5666655543
No 329
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.36 E-value=0.011 Score=58.12 Aligned_cols=35 Identities=17% Similarity=0.292 Sum_probs=24.3
Q ss_pred ccccCCCCCcHHHHHHHHHHhcC---CcEEEEeccccC
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLN---YDVYDLELTTVQ 263 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~---~~i~~l~~~~~~ 263 (504)
+.+.||+|+||||+++.++..++ ..+..+++..+.
T Consensus 8 IgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 8 ISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp EEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 66899999999999999999776 445556655543
No 330
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=94.35 E-value=0.042 Score=51.38 Aligned_cols=20 Identities=20% Similarity=0.488 Sum_probs=18.4
Q ss_pred ccccCCCCCcHHHHHHHHHH
Q 037859 229 YLLYGPPGTGKSTMIAAMAN 248 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~ 248 (504)
++|.|.+|+|||+|+..+..
T Consensus 16 ivlvGd~~VGKTsLi~r~~~ 35 (216)
T 4dkx_A 16 LVFLGEQSVGKTSLITRFMY 35 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECcCCcCHHHHHHHHHh
Confidence 78999999999999999875
No 331
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=94.35 E-value=0.023 Score=51.09 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=20.4
Q ss_pred ccccccCCCCCcHHHHHHHHHHh
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~ 249 (504)
.-+++.|++|+|||+|+.++.+.
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999864
No 332
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=94.31 E-value=0.023 Score=51.92 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=19.8
Q ss_pred cccccCCCCCcHHHHHHHHHHh
Q 037859 228 GYLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~ 249 (504)
-++|.|++|+|||+|+.++.+.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999863
No 333
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=94.29 E-value=0.057 Score=61.23 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=19.3
Q ss_pred ccccccCCCCCcHHHHHHHHHH
Q 037859 227 KGYLLYGPPGTGKSTMIAAMAN 248 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~ 248 (504)
+-++|.||.|+||||+.+.+|.
T Consensus 674 ~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 674 RVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp CEEEEESCCCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCchHHHHHHHHH
Confidence 3488999999999999999874
No 334
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.28 E-value=0.024 Score=56.10 Aligned_cols=34 Identities=24% Similarity=0.246 Sum_probs=26.8
Q ss_pred ccccccCCCCCcHHHHHHHHHHhc---CCcEEEEecc
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANFL---NYDVYDLELT 260 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~ 260 (504)
+-+++.||+|+||||++..+|..+ +..+..+++.
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D 141 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAAD 141 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred eEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccc
Confidence 457899999999999999999876 4556555543
No 335
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=94.23 E-value=0.029 Score=50.55 Aligned_cols=23 Identities=26% Similarity=0.547 Sum_probs=20.2
Q ss_pred ccccccCCCCCcHHHHHHHHHHh
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~ 249 (504)
--+++.|++|+|||+|+.++.+.
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 35899999999999999999864
No 336
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.20 E-value=0.03 Score=50.21 Aligned_cols=22 Identities=18% Similarity=0.376 Sum_probs=19.7
Q ss_pred ccccccCCCCCcHHHHHHHHHH
Q 037859 227 KGYLLYGPPGTGKSTMIAAMAN 248 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~ 248 (504)
--+++.|++|+|||+|+.++.+
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3489999999999999999984
No 337
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=94.19 E-value=0.1 Score=58.47 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=20.3
Q ss_pred ccccccCCCCCcHHHHHHHHHHh
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~ 249 (504)
+-++|.||.|+|||++.+.+|..
T Consensus 608 ~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 608 RMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 44889999999999999999864
No 338
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.17 E-value=0.023 Score=60.34 Aligned_cols=39 Identities=18% Similarity=0.267 Sum_probs=29.0
Q ss_pred cChhHHHHHHHhh--cccccccCCCCCcHHHHHHHHHHhcC
Q 037859 213 METKKKEEIKKDL--KKGYLLYGPPGTGKSTMIAAMANFLN 251 (504)
Q Consensus 213 ~~~~~k~~i~~~l--~rg~LL~GPpGtGKTsla~aiA~~l~ 251 (504)
+.+...+.+.-.+ +.++++.||+|+||||+++++++.+.
T Consensus 245 ~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 245 VPSGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4454444444444 44589999999999999999999884
No 339
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.15 E-value=0.01 Score=57.06 Aligned_cols=27 Identities=22% Similarity=0.427 Sum_probs=22.9
Q ss_pred cccccCCCCCcHHHHHHHHHHhc-CCcE
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFL-NYDV 254 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l-~~~i 254 (504)
-+.|.|++|+||||+++.||..+ +..+
T Consensus 26 ~I~ieG~~GsGKST~~~~L~~~l~~~~~ 53 (263)
T 1p5z_B 26 KISIEGNIAAGKSTFVNILKQLCEDWEV 53 (263)
T ss_dssp EEEEECSTTSSHHHHHTTTGGGCTTEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 36789999999999999999998 4333
No 340
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=94.14 E-value=0.021 Score=50.92 Aligned_cols=21 Identities=29% Similarity=0.556 Sum_probs=9.1
Q ss_pred cccccCCCCCcHHHHHHHHHH
Q 037859 228 GYLLYGPPGTGKSTMIAAMAN 248 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~ 248 (504)
-+++.|+||+|||+|+.++.+
T Consensus 10 ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 588999999999999999875
No 341
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.12 E-value=0.027 Score=58.64 Aligned_cols=35 Identities=29% Similarity=0.433 Sum_probs=27.9
Q ss_pred cccccccCCCCCcHHHHHHHHHHhc---CCcEEEEecc
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFL---NYDVYDLELT 260 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~ 260 (504)
++-+++.||||+||||++..+|.++ |..+..+++.
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D 137 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSD 137 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 4568899999999999999999876 5666665544
No 342
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=94.09 E-value=0.038 Score=53.30 Aligned_cols=22 Identities=32% Similarity=0.582 Sum_probs=19.9
Q ss_pred cccccCCCCCcHHHHHHHHHHh
Q 037859 228 GYLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~ 249 (504)
-+.|.|+||+|||||+.++.+.
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999864
No 343
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.07 E-value=0.053 Score=53.75 Aligned_cols=35 Identities=23% Similarity=0.241 Sum_probs=27.3
Q ss_pred ccc--ccccCCCCCcHHHHHHHHHHhc---CCcEEEEecc
Q 037859 226 KKG--YLLYGPPGTGKSTMIAAMANFL---NYDVYDLELT 260 (504)
Q Consensus 226 ~rg--~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~ 260 (504)
++| +++.|+||+|||+++..+|... +.++..+++.
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE 105 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 105 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 445 8899999999999999998654 4566666554
No 344
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=94.05 E-value=0.068 Score=50.26 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=20.4
Q ss_pred ccccccCCCCCcHHHHHHHHHHh
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~ 249 (504)
.-++|.|++|+|||||+.++.+.
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHcCC
Confidence 45899999999999999999864
No 345
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=94.05 E-value=0.022 Score=53.22 Aligned_cols=30 Identities=30% Similarity=0.352 Sum_probs=27.1
Q ss_pred ccccCCCCCcHHHHHHHHHHhcCCcEEEEec
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLNYDVYDLEL 259 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~ 259 (504)
+-|+|.+|||||++++.++. +|+++++.|.
T Consensus 12 iglTGgigsGKStv~~~l~~-~g~~vidaD~ 41 (210)
T 4i1u_A 12 IGLTGGIGSGKTTVADLFAA-RGASLVDTDL 41 (210)
T ss_dssp EEEECCTTSCHHHHHHHHHH-TTCEEEEHHH
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCcEEECcH
Confidence 56899999999999999998 9999998765
No 346
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.04 E-value=0.019 Score=56.79 Aligned_cols=24 Identities=33% Similarity=0.576 Sum_probs=21.4
Q ss_pred ccccccCCCCCcHHHHHHHHHHhc
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANFL 250 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~l 250 (504)
.-+.|.||+|+||||+++.||+.+
T Consensus 103 ~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHH
Confidence 347789999999999999999876
No 347
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.02 E-value=0.021 Score=52.07 Aligned_cols=22 Identities=27% Similarity=0.513 Sum_probs=20.0
Q ss_pred cccccCCCCCcHHHHHHHHHHh
Q 037859 228 GYLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~ 249 (504)
-+.|.||+|+|||+|++.+++.
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4688999999999999999985
No 348
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=93.97 E-value=0.019 Score=51.98 Aligned_cols=21 Identities=29% Similarity=0.534 Sum_probs=19.6
Q ss_pred cccccCCCCCcHHHHHHHHHH
Q 037859 228 GYLLYGPPGTGKSTMIAAMAN 248 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~ 248 (504)
-+++.|+||+|||+|+.++.+
T Consensus 25 ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 25 KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 488999999999999999987
No 349
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=93.97 E-value=0.19 Score=50.50 Aligned_cols=22 Identities=18% Similarity=0.376 Sum_probs=19.9
Q ss_pred cccccCCCCCcHHHHHHHHHHh
Q 037859 228 GYLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~ 249 (504)
-+.+.|++|+|||||+.++.+.
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4788999999999999999983
No 350
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.95 E-value=0.024 Score=53.66 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=21.8
Q ss_pred cccccCCCCCcHHHHHHHHHHhcC
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFLN 251 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l~ 251 (504)
-+.+.|++|+||||+++.++..++
T Consensus 4 ~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHCT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 367899999999999999999984
No 351
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=93.93 E-value=0.023 Score=57.51 Aligned_cols=27 Identities=26% Similarity=0.434 Sum_probs=23.5
Q ss_pred ccccccCCCCCcHHHHHHHHHHhcCCc
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANFLNYD 253 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~l~~~ 253 (504)
.-+.|.||+|+|||||++.|++.+...
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 347899999999999999999987653
No 352
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=93.91 E-value=0.15 Score=45.35 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=20.3
Q ss_pred ccccccCCCCCcHHHHHHHHHHh
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~ 249 (504)
.-+++.|++|+|||+|+.++.+.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35889999999999999999764
No 353
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=93.91 E-value=0.02 Score=51.97 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=20.5
Q ss_pred cccccCCCCCcHHHHHHHHHHhc
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFL 250 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l 250 (504)
-+.|.||+|+|||||++.+++..
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999999854
No 354
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.90 E-value=0.021 Score=56.40 Aligned_cols=24 Identities=29% Similarity=0.445 Sum_probs=21.6
Q ss_pred ccccccCCCCCcHHHHHHHHHHhc
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANFL 250 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~l 250 (504)
.-+.|.||.|+||||+++.||+.+
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 347899999999999999999976
No 355
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=93.90 E-value=0.027 Score=51.05 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=19.1
Q ss_pred cccccCCCCCcHHHHHHHHHH
Q 037859 228 GYLLYGPPGTGKSTMIAAMAN 248 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~ 248 (504)
-+++.|+||+|||+|+.++.+
T Consensus 31 ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 31 RILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp EEEEEESTTSSHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999964
No 356
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.89 E-value=0.019 Score=56.78 Aligned_cols=34 Identities=21% Similarity=0.201 Sum_probs=25.9
Q ss_pred ccccCCCCCcHHHHHHHHHHhcC-----CcEEEEecccc
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLN-----YDVYDLELTTV 262 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~-----~~i~~l~~~~~ 262 (504)
+.|.||+|+|||||++.|++.++ -.+..+++...
T Consensus 83 igI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~ 121 (308)
T 1sq5_A 83 ISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF 121 (308)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCc
Confidence 66899999999999999999876 12555554443
No 357
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.89 E-value=0.03 Score=59.42 Aligned_cols=24 Identities=8% Similarity=0.030 Sum_probs=22.4
Q ss_pred ccccCCCCCcHHHHHHHHHHhcCC
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLNY 252 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~~ 252 (504)
+.|.|++||||||++++||..|+.
T Consensus 398 I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 398 IVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEECTTCCSCHHHHHHHHHHHHTT
T ss_pred EEecccCCCCHHHHHHHHHHHHHH
Confidence 678999999999999999999985
No 358
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.87 E-value=0.023 Score=51.43 Aligned_cols=33 Identities=18% Similarity=0.120 Sum_probs=25.0
Q ss_pred ccccccCCCCCcHHHHHHHHHHhc---CCcEEEEec
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANFL---NYDVYDLEL 259 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~ 259 (504)
.-+.|.||+|+|||+++..++..+ ++.+-.+..
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~ 42 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKH 42 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEee
Confidence 347789999999999999998865 444544443
No 359
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.85 E-value=0.022 Score=56.58 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=20.8
Q ss_pred ccccCCCCCcHHHHHHHHHHhcC
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLN 251 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~ 251 (504)
+.|.||+|+|||||++.|++.+.
T Consensus 93 vgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 93 IGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCchHHHHHHHHHhhcc
Confidence 66899999999999999999774
No 360
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.84 E-value=0.02 Score=54.57 Aligned_cols=24 Identities=33% Similarity=0.664 Sum_probs=21.2
Q ss_pred ccccCCCCCcHHHHHHHHHHhcCC
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLNY 252 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~~ 252 (504)
+.|.||.|+|||||.+.|++.+..
T Consensus 27 ~~liG~nGsGKSTLl~~l~Gl~~p 50 (240)
T 2onk_A 27 CVLLGPTGAGKSVFLELIAGIVKP 50 (240)
T ss_dssp EEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC
Confidence 568999999999999999997643
No 361
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.83 E-value=0.04 Score=57.56 Aligned_cols=36 Identities=19% Similarity=0.357 Sum_probs=27.7
Q ss_pred hhccc--ccccCCCCCcHHHHHHHHHHhc----CCcEEEEec
Q 037859 224 DLKKG--YLLYGPPGTGKSTMIAAMANFL----NYDVYDLEL 259 (504)
Q Consensus 224 ~l~rg--~LL~GPpGtGKTsla~aiA~~l----~~~i~~l~~ 259 (504)
-+++| +++.||||+|||+|+..+|..+ |.++..+++
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 34555 7899999999999999988754 557776654
No 362
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=93.79 E-value=0.075 Score=51.54 Aligned_cols=22 Identities=23% Similarity=0.520 Sum_probs=19.6
Q ss_pred cccccCCCCCcHHHHHHHHHHh
Q 037859 228 GYLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~ 249 (504)
-+.|.|+||+|||||..++.+.
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 3688999999999999999873
No 363
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=93.79 E-value=0.013 Score=61.67 Aligned_cols=26 Identities=23% Similarity=0.462 Sum_probs=22.9
Q ss_pred cccccccCCCCCcHHHHHHHHHHhcC
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFLN 251 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l~ 251 (504)
+.-++|.|.||+|||++++.+|..++
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34588999999999999999999874
No 364
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=93.74 E-value=0.023 Score=56.80 Aligned_cols=23 Identities=43% Similarity=0.660 Sum_probs=21.1
Q ss_pred cccccCCCCCcHHHHHHHHHHhc
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFL 250 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l 250 (504)
-+.|.||+|+||||+++.||+.+
T Consensus 131 vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 131 VIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999876
No 365
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.73 E-value=0.017 Score=54.53 Aligned_cols=24 Identities=25% Similarity=0.366 Sum_probs=21.5
Q ss_pred ccccCCCCCcHHHHHHHHHHhcCC
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLNY 252 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~~ 252 (504)
+.|.||.|+|||||+++|++.+..
T Consensus 33 ~~iiG~nGsGKSTLl~~l~Gl~~p 56 (224)
T 2pcj_A 33 VSIIGASGSGKSTLLYILGLLDAP 56 (224)
T ss_dssp EEEEECTTSCHHHHHHHHTTSSCC
T ss_pred EEEECCCCCCHHHHHHHHhcCCCC
Confidence 779999999999999999987653
No 366
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.72 E-value=0.026 Score=49.15 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=19.8
Q ss_pred cccccCCCCCcHHHHHHHHHHh
Q 037859 228 GYLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~ 249 (504)
-+++.|++|+|||+|+.++.+.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
No 367
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.71 E-value=0.019 Score=54.62 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=22.0
Q ss_pred cccccCCCCCcHHHHHHHHHHhcCC
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFLNY 252 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l~~ 252 (504)
-+.|.||.|+|||||++.|++.+..
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~~p 57 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLDKP 57 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCC
Confidence 3779999999999999999987754
No 368
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.68 E-value=0.025 Score=56.35 Aligned_cols=24 Identities=25% Similarity=0.242 Sum_probs=21.4
Q ss_pred cccccCCCCCcHHHHHHHHHHhcC
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFLN 251 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l~ 251 (504)
-+.|.||+||||||+++.|+..++
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 366889999999999999999875
No 369
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.67 E-value=0.019 Score=54.66 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=21.0
Q ss_pred cccccCCCCCcHHHHHHHHHHhc
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFL 250 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l 250 (504)
-+.|.||.|+|||||++.|++.+
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999999876
No 370
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.67 E-value=0.025 Score=55.57 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=21.1
Q ss_pred ccccCCCCCcHHHHHHHHHHhcC
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLN 251 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~ 251 (504)
+.+.||+|+||||+++.|+..++
T Consensus 34 i~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 34 IFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhh
Confidence 66899999999999999999875
No 371
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=93.60 E-value=0.037 Score=50.36 Aligned_cols=21 Identities=33% Similarity=0.583 Sum_probs=18.9
Q ss_pred cccccCCCCCcHHHHHHHHHH
Q 037859 228 GYLLYGPPGTGKSTMIAAMAN 248 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~ 248 (504)
-++|.|+||+|||+|+..+++
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 488999999999999999963
No 372
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.60 E-value=0.027 Score=56.40 Aligned_cols=26 Identities=31% Similarity=0.623 Sum_probs=22.8
Q ss_pred cccccccCCCCCcHHHHHHHHHHhcC
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFLN 251 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l~ 251 (504)
+..+++.||+|+|||||+++|++.+.
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 44588999999999999999999874
No 373
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=93.59 E-value=0.023 Score=50.78 Aligned_cols=22 Identities=18% Similarity=0.320 Sum_probs=19.8
Q ss_pred cccccCCCCCcHHHHHHHHHHh
Q 037859 228 GYLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~ 249 (504)
-+++.|++|+|||+|+.++.+.
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999853
No 374
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.57 E-value=0.035 Score=58.44 Aligned_cols=22 Identities=36% Similarity=0.572 Sum_probs=20.6
Q ss_pred ccccCCCCCcHHHHHHHHHHhc
Q 037859 229 YLLYGPPGTGKSTMIAAMANFL 250 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l 250 (504)
++|.||+|+||||+++.||+.+
T Consensus 296 I~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 296 ILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCcccHHHHHHHHHHHh
Confidence 7789999999999999999876
No 375
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.57 E-value=0.024 Score=49.98 Aligned_cols=22 Identities=36% Similarity=0.520 Sum_probs=19.6
Q ss_pred cccccCCCCCcHHHHHHHHHHh
Q 037859 228 GYLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~ 249 (504)
-+.|.|+||+|||+|+.++++.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999999864
No 376
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=93.56 E-value=0.2 Score=59.29 Aligned_cols=26 Identities=35% Similarity=0.657 Sum_probs=22.8
Q ss_pred ccc--ccccCCCCCcHHHHHHHHHHhcC
Q 037859 226 KKG--YLLYGPPGTGKSTMIAAMANFLN 251 (504)
Q Consensus 226 ~rg--~LL~GPpGtGKTsla~aiA~~l~ 251 (504)
++| +.+.||.|+|||||++.|.+.+.
T Consensus 442 ~~G~~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 442 NAGQTVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp CTTCEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred cCCcEEEEEecCCCcHHHHHHHhccccc
Confidence 445 78999999999999999998874
No 377
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=93.55 E-value=0.041 Score=54.77 Aligned_cols=36 Identities=39% Similarity=0.549 Sum_probs=28.3
Q ss_pred cccccccCCCCCcHHHHHHHHHHhc---CCcEEEEeccc
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFL---NYDVYDLELTT 261 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~ 261 (504)
++-+++.||+|+||||++..+|..+ +..+..+++..
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~ 143 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADT 143 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 3458899999999999999999876 56666665543
No 378
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.51 E-value=0.029 Score=50.40 Aligned_cols=24 Identities=17% Similarity=0.466 Sum_probs=20.9
Q ss_pred ccccccCCCCCcHHHHHHHHHHhc
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANFL 250 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~l 250 (504)
.-+++.|++|+|||+|+.++++.-
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999999998753
No 379
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=93.50 E-value=0.052 Score=49.20 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=20.1
Q ss_pred ccccccCCCCCcHHHHHHHHHHh
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~ 249 (504)
--++|.|++|+|||+|++.+.+.
T Consensus 21 ~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 21 PRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp CEEEEEESTTSSHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 34899999999999999988764
No 380
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=93.50 E-value=0.065 Score=51.43 Aligned_cols=22 Identities=41% Similarity=0.629 Sum_probs=19.7
Q ss_pred cccccCCCCCcHHHHHHHHHHh
Q 037859 228 GYLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~ 249 (504)
-+.|.|+||+|||||+.++.+.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4788999999999999999864
No 381
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.49 E-value=0.044 Score=55.25 Aligned_cols=32 Identities=38% Similarity=0.424 Sum_probs=25.5
Q ss_pred cccccCCCCCcHHHHHHHHHHhc---CCcEEEEec
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFL---NYDVYDLEL 259 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~ 259 (504)
-+.|.|+||+||||++.+++..+ |..+..++.
T Consensus 81 ~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~ 115 (355)
T 3p32_A 81 RVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAV 115 (355)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEec
Confidence 37889999999999999999876 556555544
No 382
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.46 E-value=0.022 Score=51.23 Aligned_cols=21 Identities=24% Similarity=0.605 Sum_probs=19.1
Q ss_pred ccccCCCCCcHHHHHHHHHHh
Q 037859 229 YLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~ 249 (504)
++|.|+||+|||+|+..+++.
T Consensus 5 v~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 5 LMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEESCTTSSHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 689999999999999999873
No 383
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.46 E-value=0.022 Score=53.34 Aligned_cols=25 Identities=28% Similarity=0.563 Sum_probs=21.9
Q ss_pred cccccCCCCCcHHHHHHHHHHhcCC
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFLNY 252 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l~~ 252 (504)
-+.|.||.|+|||||.++|++.+..
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~~p 61 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYLKP 61 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 3779999999999999999997643
No 384
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=93.43 E-value=0.043 Score=55.03 Aligned_cols=25 Identities=40% Similarity=0.623 Sum_probs=21.5
Q ss_pred ccc--ccccCCCCCcHHHHHHHHHHhc
Q 037859 226 KKG--YLLYGPPGTGKSTMIAAMANFL 250 (504)
Q Consensus 226 ~rg--~LL~GPpGtGKTsla~aiA~~l 250 (504)
++| +.|.||||+|||||++++++.+
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 445 6789999999999999999865
No 385
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.40 E-value=0.023 Score=54.97 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=21.7
Q ss_pred ccccCCCCCcHHHHHHHHHHhcCC
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLNY 252 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~~ 252 (504)
+.|.||.|+|||||+++|++.+..
T Consensus 35 ~~liG~nGsGKSTLlk~l~Gl~~p 58 (262)
T 1b0u_A 35 ISIIGSSGSGKSTFLRCINFLEKP 58 (262)
T ss_dssp EEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEECCCCCCHHHHHHHHhcCCCC
Confidence 779999999999999999998754
No 386
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=93.38 E-value=0.059 Score=54.28 Aligned_cols=32 Identities=28% Similarity=0.410 Sum_probs=26.6
Q ss_pred ccc--ccccCCCCCcHHHHHHHHHHhcCCcEEEE
Q 037859 226 KKG--YLLYGPPGTGKSTMIAAMANFLNYDVYDL 257 (504)
Q Consensus 226 ~rg--~LL~GPpGtGKTsla~aiA~~l~~~i~~l 257 (504)
.+| +.|.||+|+|||+|++.|++....+...+
T Consensus 69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i 102 (347)
T 2obl_A 69 GIGQRIGIFAGSGVGKSTLLGMICNGASADIIVL 102 (347)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEE
Confidence 566 78999999999999999999987664433
No 387
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=93.38 E-value=0.017 Score=52.79 Aligned_cols=21 Identities=19% Similarity=0.474 Sum_probs=19.1
Q ss_pred cccccCCCCCcHHHHHHHHHH
Q 037859 228 GYLLYGPPGTGKSTMIAAMAN 248 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~ 248 (504)
-+++.|+||+|||+|+.++.+
T Consensus 27 ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 27 KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEETTSSHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 488999999999999999975
No 388
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=93.38 E-value=0.04 Score=51.66 Aligned_cols=30 Identities=27% Similarity=0.225 Sum_probs=24.9
Q ss_pred ccccCCCCCcHHHHHHHHHHhcCCcEEEEe
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLNYDVYDLE 258 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~~~i~~l~ 258 (504)
+.|.||+|+||||+++.++..++.++..+.
T Consensus 8 i~~eG~~g~GKst~~~~l~~~l~~~~~~~~ 37 (216)
T 3tmk_A 8 ILIEGLDRTGKTTQCNILYKKLQPNCKLLK 37 (216)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHCSSEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhcccceEEE
Confidence 567899999999999999999987544333
No 389
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=93.37 E-value=0.033 Score=51.39 Aligned_cols=21 Identities=29% Similarity=0.586 Sum_probs=19.3
Q ss_pred cccccCCCCCcHHHHHHHHHH
Q 037859 228 GYLLYGPPGTGKSTMIAAMAN 248 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~ 248 (504)
-+++.|++|+|||+|+.++.+
T Consensus 36 ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 588999999999999999975
No 390
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=93.35 E-value=0.023 Score=60.94 Aligned_cols=26 Identities=38% Similarity=0.584 Sum_probs=22.9
Q ss_pred ccc--ccccCCCCCcHHHHHHHHHHhcC
Q 037859 226 KKG--YLLYGPPGTGKSTMIAAMANFLN 251 (504)
Q Consensus 226 ~rg--~LL~GPpGtGKTsla~aiA~~l~ 251 (504)
.+| +.|.||+|+||||++++||+.++
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhhc
Confidence 355 77899999999999999999885
No 391
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.33 E-value=0.033 Score=48.60 Aligned_cols=22 Identities=18% Similarity=0.321 Sum_probs=19.8
Q ss_pred cccccCCCCCcHHHHHHHHHHh
Q 037859 228 GYLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~ 249 (504)
-+++.|++|+|||+|+.++.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
No 392
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.31 E-value=0.023 Score=54.65 Aligned_cols=24 Identities=46% Similarity=0.830 Sum_probs=21.6
Q ss_pred ccccCCCCCcHHHHHHHHHHhcCC
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLNY 252 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~~ 252 (504)
+.|.||.|+|||||.++|++.+..
T Consensus 36 ~~liG~nGsGKSTLlk~l~Gl~~p 59 (257)
T 1g6h_A 36 TLIIGPNGSGKSTLINVITGFLKA 59 (257)
T ss_dssp EEEECSTTSSHHHHHHHHTTSSCC
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC
Confidence 779999999999999999997753
No 393
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=93.31 E-value=0.024 Score=57.37 Aligned_cols=23 Identities=30% Similarity=0.686 Sum_probs=20.9
Q ss_pred ccccCCCCCcHHHHHHHHHHhcC
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLN 251 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~ 251 (504)
+.|.||.|||||||.++||+...
T Consensus 33 ~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 33 LFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp EEEEESTTSSHHHHHHHHHTSSC
T ss_pred EEEECCCCchHHHHHHHHhcCCC
Confidence 67899999999999999999763
No 394
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=93.30 E-value=0.079 Score=49.13 Aligned_cols=45 Identities=29% Similarity=0.473 Sum_probs=29.7
Q ss_pred ccccCCCCCcHHHHHHHHHHhc--CCcEEEEeccccC-ChHHHHHHHH
Q 037859 229 YLLYGPPGTGKSTMIAAMANFL--NYDVYDLELTTVQ-DNSELRSLLI 273 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l--~~~i~~l~~~~~~-~~~~l~~l~~ 273 (504)
+.|-|+.|+||||.++.++..| +.+++...-..-. ....+++++.
T Consensus 5 I~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~~eP~~t~~g~~ir~~l~ 52 (205)
T 4hlc_A 5 ITFEGPEGSGKTTVINEVYHRLVKDYDVIMTREPGGVPTGEEIRKIVL 52 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTTTSCEEEEESSTTCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHHHCCCCEEEeeCCCCChHHHHHHHHHh
Confidence 4578999999999999999988 4555544332211 1244555544
No 395
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.26 E-value=0.025 Score=53.50 Aligned_cols=24 Identities=21% Similarity=0.397 Sum_probs=21.5
Q ss_pred cccccCCCCCcHHHHHHHHHHhcC
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFLN 251 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l~ 251 (504)
-+.|.||.|+|||||.+.|++.+.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 377999999999999999999764
No 396
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=93.26 E-value=0.034 Score=56.34 Aligned_cols=25 Identities=24% Similarity=0.485 Sum_probs=22.2
Q ss_pred ccccccCCCCCcHHHHHHHHHHhcC
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANFLN 251 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~l~ 251 (504)
.-++|.||+|+|||||+++|++.+.
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3478999999999999999999874
No 397
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=93.25 E-value=0.028 Score=54.61 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=20.7
Q ss_pred ccccCCCCCcHHHHHHHHHHhcC
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLN 251 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~ 251 (504)
+.|.||+|+|||||+++|++...
T Consensus 5 v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 5 IMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 67899999999999999999764
No 398
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.24 E-value=0.035 Score=49.01 Aligned_cols=22 Identities=23% Similarity=0.489 Sum_probs=19.8
Q ss_pred cccccCCCCCcHHHHHHHHHHh
Q 037859 228 GYLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~ 249 (504)
-+++.|++|+|||+|+.++.+.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4889999999999999999764
No 399
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.24 E-value=0.025 Score=55.16 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=21.1
Q ss_pred ccccCCCCCcHHHHHHHHHHhcC
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLN 251 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~ 251 (504)
+.|.||.|+|||||+++|++.+.
T Consensus 37 ~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 37 TAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp EEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEECCCCCCHHHHHHHHHcCCC
Confidence 78999999999999999998764
No 400
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=93.23 E-value=0.022 Score=53.89 Aligned_cols=23 Identities=43% Similarity=0.472 Sum_probs=20.8
Q ss_pred ccccCCCCCcHHHHHHHHHHhcC
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLN 251 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~ 251 (504)
+.|.||.|+|||+|.++|+..+.
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~~ 52 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTALI 52 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcccc
Confidence 56899999999999999999874
No 401
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=93.22 E-value=0.13 Score=58.42 Aligned_cols=21 Identities=33% Similarity=0.335 Sum_probs=18.7
Q ss_pred ccccccCCCCCcHHHHHHHHH
Q 037859 227 KGYLLYGPPGTGKSTMIAAMA 247 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA 247 (504)
+-++|.||.|+||||+.+.+|
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 348899999999999999985
No 402
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=93.21 E-value=0.031 Score=48.76 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=19.6
Q ss_pred cccccCCCCCcHHHHHHHHHHh
Q 037859 228 GYLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~ 249 (504)
-+++.|+||+|||+|+.++.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4789999999999999999864
No 403
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.18 E-value=0.026 Score=53.86 Aligned_cols=24 Identities=33% Similarity=0.587 Sum_probs=21.4
Q ss_pred cccccCCCCCcHHHHHHHHHHhcC
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFLN 251 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l~ 251 (504)
-+.|.||.|+|||||++.|++.+.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 378999999999999999998763
No 404
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.18 E-value=0.033 Score=56.44 Aligned_cols=23 Identities=30% Similarity=0.470 Sum_probs=21.2
Q ss_pred cccccCCCCCcHHHHHHHHHHhc
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFL 250 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l 250 (504)
-+.|.||.|+||||+++.||+.+
T Consensus 159 vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHHHHhhc
Confidence 47899999999999999999976
No 405
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.14 E-value=0.026 Score=54.59 Aligned_cols=25 Identities=28% Similarity=0.614 Sum_probs=22.0
Q ss_pred cccccCCCCCcHHHHHHHHHHhcCC
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFLNY 252 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l~~ 252 (504)
-+.|.||.|+|||||++.|++.+..
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~~p 76 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLEDF 76 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC
Confidence 3779999999999999999998753
No 406
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=93.13 E-value=0.03 Score=57.09 Aligned_cols=23 Identities=35% Similarity=0.668 Sum_probs=20.9
Q ss_pred ccccCCCCCcHHHHHHHHHHhcC
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLN 251 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~ 251 (504)
+.|.||.|||||||.+.||+...
T Consensus 32 ~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 32 VVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp EEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEcCCCchHHHHHHHHHcCCC
Confidence 67899999999999999999763
No 407
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.12 E-value=0.026 Score=54.01 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=21.7
Q ss_pred ccccCCCCCcHHHHHHHHHHhcCC
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLNY 252 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~~ 252 (504)
+.|.||.|+|||||++.|++.+..
T Consensus 38 ~~i~G~nGsGKSTLl~~l~Gl~~p 61 (247)
T 2ff7_A 38 IGIVGRSGSGKSTLTKLIQRFYIP 61 (247)
T ss_dssp EEEECSTTSSHHHHHHHHTTSSCC
T ss_pred EEEECCCCCCHHHHHHHHhcCCCC
Confidence 779999999999999999998743
No 408
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.12 E-value=0.03 Score=56.59 Aligned_cols=23 Identities=35% Similarity=0.628 Sum_probs=20.9
Q ss_pred ccccCCCCCcHHHHHHHHHHhcC
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLN 251 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~ 251 (504)
+.|.||.|||||||.+.||+.+.
T Consensus 44 ~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 44 VGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp EEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEECCCCCcHHHHHHHHhCCCC
Confidence 67899999999999999998763
No 409
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.11 E-value=0.048 Score=57.75 Aligned_cols=34 Identities=18% Similarity=0.344 Sum_probs=27.3
Q ss_pred cccccccCCCCCcHHHHHHHHHHhc---CCcEEEEec
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFL---NYDVYDLEL 259 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~ 259 (504)
++-+++.|+||+||||++..+|..+ |..+..+++
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 3458899999999999999999776 666666665
No 410
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=93.10 E-value=0.12 Score=52.62 Aligned_cols=32 Identities=28% Similarity=0.510 Sum_probs=25.4
Q ss_pred HHHHHhh---ccc--ccccCCCCCcHHHHHHHHHHhc
Q 037859 219 EEIKKDL---KKG--YLLYGPPGTGKSTMIAAMANFL 250 (504)
Q Consensus 219 ~~i~~~l---~rg--~LL~GPpGtGKTsla~aiA~~l 250 (504)
-++++.+ .|| .++.||||||||+|+..||+..
T Consensus 163 iraID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i 199 (427)
T 3l0o_A 163 TRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGI 199 (427)
T ss_dssp HHHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHH
T ss_pred chhhhhcccccCCceEEEecCCCCChhHHHHHHHHHH
Confidence 3555555 455 8999999999999999998854
No 411
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.09 E-value=0.032 Score=53.45 Aligned_cols=21 Identities=43% Similarity=0.534 Sum_probs=19.9
Q ss_pred ccccCCCCCcHHHHHHHHHHh
Q 037859 229 YLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~ 249 (504)
+.|.||.|+|||||++.|++.
T Consensus 32 ~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 32 HALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEECSTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 779999999999999999996
No 412
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=93.09 E-value=0.033 Score=49.75 Aligned_cols=22 Identities=36% Similarity=0.520 Sum_probs=20.0
Q ss_pred cccccCCCCCcHHHHHHHHHHh
Q 037859 228 GYLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~ 249 (504)
-++|.|++|+|||+|+.++++.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999873
No 413
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=93.08 E-value=0.031 Score=56.65 Aligned_cols=23 Identities=39% Similarity=0.738 Sum_probs=20.8
Q ss_pred ccccCCCCCcHHHHHHHHHHhcC
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLN 251 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~ 251 (504)
+.|.||.|||||||.+.||+.+.
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 32 MALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp EEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEECCCCchHHHHHHHHhcCCC
Confidence 67899999999999999998763
No 414
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.07 E-value=0.027 Score=53.63 Aligned_cols=24 Identities=33% Similarity=0.567 Sum_probs=21.7
Q ss_pred ccccCCCCCcHHHHHHHHHHhcCC
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLNY 252 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~~ 252 (504)
+.|.||.|+|||||.+.|++.+..
T Consensus 35 ~~l~G~nGsGKSTLl~~l~Gl~~p 58 (240)
T 1ji0_A 35 VTLIGANGAGKTTTLSAIAGLVRA 58 (240)
T ss_dssp EEEECSTTSSHHHHHHHHTTSSCC
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC
Confidence 779999999999999999998754
No 415
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.05 E-value=0.033 Score=53.94 Aligned_cols=23 Identities=39% Similarity=0.514 Sum_probs=20.8
Q ss_pred cccccCCCCCcHHHHHHHHHHhc
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFL 250 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l 250 (504)
-+.|.||.|+|||||++.|++.+
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl~ 70 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGRE 70 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCT
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37799999999999999999974
No 416
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=93.02 E-value=0.032 Score=56.52 Aligned_cols=23 Identities=35% Similarity=0.637 Sum_probs=20.9
Q ss_pred ccccCCCCCcHHHHHHHHHHhcC
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLN 251 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~ 251 (504)
+.|.||.|||||||.+.||+...
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl~~ 54 (359)
T 2yyz_A 32 VALLGPSGCGKTTTLLMLAGIYK 54 (359)
T ss_dssp EEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEEcCCCchHHHHHHHHHCCCC
Confidence 67899999999999999998763
No 417
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=93.01 E-value=0.071 Score=55.44 Aligned_cols=31 Identities=32% Similarity=0.532 Sum_probs=25.9
Q ss_pred ccc--ccccCCCCCcHHHHHHHHHHhcCCcEEE
Q 037859 226 KKG--YLLYGPPGTGKSTMIAAMANFLNYDVYD 256 (504)
Q Consensus 226 ~rg--~LL~GPpGtGKTsla~aiA~~l~~~i~~ 256 (504)
++| +.|.||+|||||+|++.||+....+...
T Consensus 155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~ 187 (438)
T 2dpy_A 155 GRGQRMGLFAGSGVGKSVLLGMMARYTRADVIV 187 (438)
T ss_dssp BTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccCCCeEE
Confidence 566 7799999999999999999998665433
No 418
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.00 E-value=0.044 Score=52.54 Aligned_cols=25 Identities=44% Similarity=0.643 Sum_probs=22.3
Q ss_pred ccccCCCCCcHHHHHHHHHHhcCCc
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLNYD 253 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~~~ 253 (504)
+.|.||.|+|||||.+.|++.+...
T Consensus 29 ~~liG~NGsGKSTLlk~l~Gl~~p~ 53 (249)
T 2qi9_C 29 LHLVGPNGAGKSTLLARMAGMTSGK 53 (249)
T ss_dssp EEEECCTTSSHHHHHHHHTTSSCCE
T ss_pred EEEECCCCCcHHHHHHHHhCCCCCC
Confidence 7799999999999999999987544
No 419
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=92.97 E-value=0.028 Score=54.59 Aligned_cols=25 Identities=40% Similarity=0.539 Sum_probs=22.1
Q ss_pred cccccCCCCCcHHHHHHHHHHhcCC
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFLNY 252 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l~~ 252 (504)
-+.|.||.|+|||||++.|++.+..
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~~p 71 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLYQP 71 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 3789999999999999999998753
No 420
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=92.97 E-value=0.033 Score=56.68 Aligned_cols=23 Identities=35% Similarity=0.676 Sum_probs=20.9
Q ss_pred ccccCCCCCcHHHHHHHHHHhcC
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLN 251 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~ 251 (504)
+.|.||.|||||||.+.||+.+.
T Consensus 40 ~~llGpnGsGKSTLLr~iaGl~~ 62 (372)
T 1v43_A 40 LVLLGPSGCGKTTTLRMIAGLEE 62 (372)
T ss_dssp EEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEECCCCChHHHHHHHHHcCCC
Confidence 67899999999999999998764
No 421
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.97 E-value=0.021 Score=51.56 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=21.4
Q ss_pred cccccCCCCCcHHHHHHHHHHhcC
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFLN 251 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l~ 251 (504)
-+.+.||+|+|||||++.|++.+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 467899999999999999999874
No 422
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=92.95 E-value=0.029 Score=54.17 Aligned_cols=24 Identities=33% Similarity=0.535 Sum_probs=21.7
Q ss_pred cccccCCCCCcHHHHHHHHHHhcC
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFLN 251 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l~ 251 (504)
-+.|.||.|+|||||++.|++.+.
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhccCC
Confidence 378999999999999999999764
No 423
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=92.93 E-value=0.029 Score=54.74 Aligned_cols=24 Identities=29% Similarity=0.681 Sum_probs=21.7
Q ss_pred ccccCCCCCcHHHHHHHHHHhcCC
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLNY 252 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~~ 252 (504)
+.|.||.|+|||||++.|++.+..
T Consensus 50 ~~liG~NGsGKSTLlk~l~Gl~~p 73 (279)
T 2ihy_A 50 WILYGLNGAGKTTLLNILNAYEPA 73 (279)
T ss_dssp EEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEECCCCCcHHHHHHHHhCCCCC
Confidence 779999999999999999998753
No 424
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=92.86 E-value=0.029 Score=54.34 Aligned_cols=23 Identities=35% Similarity=0.759 Sum_probs=21.1
Q ss_pred ccccCCCCCcHHHHHHHHHHhcC
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLN 251 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~ 251 (504)
+.|.||.|+|||||+++|++.+.
T Consensus 40 ~~liG~nGsGKSTLl~~l~Gl~~ 62 (266)
T 4g1u_C 40 VAIIGPNGAGKSTLLRLLTGYLS 62 (266)
T ss_dssp EEEECCTTSCHHHHHHHHTSSSC
T ss_pred EEEECCCCCcHHHHHHHHhcCCC
Confidence 77999999999999999999774
No 425
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=92.86 E-value=0.035 Score=56.56 Aligned_cols=22 Identities=36% Similarity=0.705 Sum_probs=20.5
Q ss_pred ccccCCCCCcHHHHHHHHHHhc
Q 037859 229 YLLYGPPGTGKSTMIAAMANFL 250 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l 250 (504)
+.|.||.|||||||.+.||+.+
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 32 MILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCcHHHHHHHHHHcCC
Confidence 7789999999999999999876
No 426
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=92.84 E-value=0.55 Score=51.73 Aligned_cols=18 Identities=28% Similarity=0.410 Sum_probs=16.0
Q ss_pred cccccccCCCCCcHHHHH
Q 037859 226 KKGYLLYGPPGTGKSTMI 243 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla 243 (504)
.+.+++.||+|+|||..+
T Consensus 39 ~~~~lv~apTGsGKT~~~ 56 (720)
T 2zj8_A 39 GKNALISIPTASGKTLIA 56 (720)
T ss_dssp TCEEEEECCGGGCHHHHH
T ss_pred CCcEEEEcCCccHHHHHH
Confidence 566999999999999877
No 427
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=92.79 E-value=0.065 Score=50.91 Aligned_cols=33 Identities=30% Similarity=0.580 Sum_probs=26.0
Q ss_pred cccccCCCCCcHHHHHHHHHHhc--CCcEEEEecc
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFL--NYDVYDLELT 260 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l--~~~i~~l~~~ 260 (504)
-+++.|++|+||||++..+|..+ +..+..+++.
T Consensus 16 i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D 50 (262)
T 1yrb_A 16 IVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLD 50 (262)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 46788999999999999999776 5566655543
No 428
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.78 E-value=0.032 Score=53.76 Aligned_cols=25 Identities=28% Similarity=0.550 Sum_probs=21.9
Q ss_pred cccccCCCCCcHHHHHHHHHHhcCC
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFLNY 252 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l~~ 252 (504)
-+.|.||.|+|||||.+.|++.+..
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~~p 67 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLIKP 67 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 3779999999999999999987643
No 429
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=92.77 E-value=0.029 Score=56.54 Aligned_cols=23 Identities=30% Similarity=0.762 Sum_probs=21.0
Q ss_pred ccccCCCCCcHHHHHHHHHHhcC
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLN 251 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~ 251 (504)
+.|.||.|||||||.+.||+...
T Consensus 29 ~~llGpnGsGKSTLLr~iaGl~~ 51 (348)
T 3d31_A 29 FVILGPTGAGKTLFLELIAGFHV 51 (348)
T ss_dssp EEEECCCTHHHHHHHHHHHTSSC
T ss_pred EEEECCCCccHHHHHHHHHcCCC
Confidence 67899999999999999998764
No 430
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=92.76 E-value=0.041 Score=48.46 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=19.7
Q ss_pred ccccccCCCCCcHHHHHHHHHH
Q 037859 227 KGYLLYGPPGTGKSTMIAAMAN 248 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~ 248 (504)
.-+++.|++|+|||+|+.++.+
T Consensus 9 ~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 9 PVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CEEEEESCTTTTHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 3488999999999999999976
No 431
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=92.72 E-value=0.032 Score=53.59 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=21.0
Q ss_pred ccccCCCCCcHHHHHHHHHHhcC
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLN 251 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~ 251 (504)
+.|.||.|+|||||.+.|++.+.
T Consensus 34 ~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 34 LAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp EEEECCSSSSHHHHHHHHTTSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 77999999999999999998764
No 432
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=92.70 E-value=0.044 Score=48.05 Aligned_cols=22 Identities=36% Similarity=0.567 Sum_probs=19.6
Q ss_pred ccccCCCCCcHHHHHHHHHHhc
Q 037859 229 YLLYGPPGTGKSTMIAAMANFL 250 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l 250 (504)
.+++||.|+|||+++.||.-.+
T Consensus 26 ~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999998655
No 433
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=92.70 E-value=0.058 Score=56.13 Aligned_cols=35 Identities=23% Similarity=0.293 Sum_probs=27.0
Q ss_pred hccc--ccccCCCCCcHHHHHHHHHHhc----CCcEEEEec
Q 037859 225 LKKG--YLLYGPPGTGKSTMIAAMANFL----NYDVYDLEL 259 (504)
Q Consensus 225 l~rg--~LL~GPpGtGKTsla~aiA~~l----~~~i~~l~~ 259 (504)
+++| +++.|+||+|||+++..+|... +.++..+++
T Consensus 197 l~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 197 LGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 3455 7899999999999999887643 556776655
No 434
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=92.69 E-value=0.038 Score=52.54 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=20.7
Q ss_pred cccccCCCCCcHHHHHHHHHHhc
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFL 250 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l 250 (504)
-+.|.||+|+||||+++.++..+
T Consensus 29 ~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 29 FIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp EEEEEESTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 36788999999999999999877
No 435
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=92.66 E-value=0.065 Score=55.67 Aligned_cols=37 Identities=24% Similarity=0.367 Sum_probs=29.9
Q ss_pred cccccccCCCCCcHHHHHHHHHHhc----CCcEEEEecccc
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFL----NYDVYDLELTTV 262 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l----~~~i~~l~~~~~ 262 (504)
++.+++.|++|+||||++..+|..+ |..+..+++...
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~ 140 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVY 140 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 4668889999999999999999765 677777776643
No 436
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=92.61 E-value=0.19 Score=51.24 Aligned_cols=25 Identities=28% Similarity=0.620 Sum_probs=21.9
Q ss_pred ccc--ccccCCCCCcHHHHHHHHHHhc
Q 037859 226 KKG--YLLYGPPGTGKSTMIAAMANFL 250 (504)
Q Consensus 226 ~rg--~LL~GPpGtGKTsla~aiA~~l 250 (504)
.+| +++.||||||||+|++.||+..
T Consensus 172 ~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 172 GRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp BTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred cCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 455 8999999999999999998865
No 437
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=92.59 E-value=0.034 Score=53.79 Aligned_cols=25 Identities=32% Similarity=0.555 Sum_probs=21.8
Q ss_pred cccccCCCCCcHHHHHHHHHHhcCC
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFLNY 252 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l~~ 252 (504)
-+.|.||.|+|||||++.|++.+..
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~~p 59 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLIEP 59 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCC
Confidence 3779999999999999999987643
No 438
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=92.55 E-value=0.038 Score=50.57 Aligned_cols=23 Identities=13% Similarity=0.264 Sum_probs=20.1
Q ss_pred ccccccCCCCCcHHHHHHHHHHh
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~ 249 (504)
--+++.|++|+|||+|+.++.+.
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 35899999999999999999853
No 439
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=92.54 E-value=0.039 Score=49.09 Aligned_cols=21 Identities=33% Similarity=0.623 Sum_probs=19.4
Q ss_pred ccccCCCCCcHHHHHHHHHHh
Q 037859 229 YLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~ 249 (504)
+.|.|+||+|||||+.++++.
T Consensus 7 i~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 7 VVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999999874
No 440
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=92.53 E-value=0.043 Score=49.06 Aligned_cols=22 Identities=18% Similarity=0.344 Sum_probs=19.8
Q ss_pred cccccCCCCCcHHHHHHHHHHh
Q 037859 228 GYLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~ 249 (504)
-+++.|+||+|||+|+.++.+.
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999874
No 441
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=92.52 E-value=0.11 Score=49.68 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=19.9
Q ss_pred cccccCCCCCcHHHHHHHHHHh
Q 037859 228 GYLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~ 249 (504)
-+++.|++|+|||||+.++.+.
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999864
No 442
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=92.48 E-value=0.037 Score=53.56 Aligned_cols=22 Identities=36% Similarity=0.865 Sum_probs=20.6
Q ss_pred ccccCCCCCcHHHHHHHHHHhc
Q 037859 229 YLLYGPPGTGKSTMIAAMANFL 250 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l 250 (504)
+.|.||.|+|||||.+.|++.+
T Consensus 33 ~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 33 VIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7789999999999999999876
No 443
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=92.46 E-value=0.02 Score=52.77 Aligned_cols=22 Identities=32% Similarity=0.427 Sum_probs=19.4
Q ss_pred ccccccCCCCCcHHHHHHHHHH
Q 037859 227 KGYLLYGPPGTGKSTMIAAMAN 248 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~ 248 (504)
--++|.|++|+|||+|+.++.+
T Consensus 12 ~ki~vvG~~~~GKSsli~~l~~ 33 (218)
T 4djt_A 12 YKICLIGDGGVGKTTYINRVLD 33 (218)
T ss_dssp EEEEEECCTTSSHHHHHCBCTT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3588999999999999999874
No 444
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=92.42 E-value=0.058 Score=53.09 Aligned_cols=36 Identities=28% Similarity=0.341 Sum_probs=28.2
Q ss_pred ccccccCCCCCcHHHHHHHHHHhc---CCcEEEEecccc
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANFL---NYDVYDLELTTV 262 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~ 262 (504)
+-+++.||+|+|||+++..+|..+ +..+..+++...
T Consensus 99 ~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~ 137 (297)
T 1j8m_F 99 YVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVY 137 (297)
T ss_dssp EEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 346788999999999999999876 666776666543
No 445
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=92.39 E-value=0.048 Score=48.02 Aligned_cols=21 Identities=33% Similarity=0.657 Sum_probs=19.0
Q ss_pred cccccCCCCCcHHHHHHHHHH
Q 037859 228 GYLLYGPPGTGKSTMIAAMAN 248 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~ 248 (504)
-+++.|+||+|||+|+.++.+
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999965
No 446
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=92.37 E-value=0.073 Score=53.38 Aligned_cols=32 Identities=19% Similarity=0.282 Sum_probs=26.2
Q ss_pred ccccCCCCCcHHHHHHHHHHhc---CCcEEEEecc
Q 037859 229 YLLYGPPGTGKSTMIAAMANFL---NYDVYDLELT 260 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~ 260 (504)
++|.|+||+|||+|+..+|... +.++.++++.
T Consensus 49 iiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlE 83 (338)
T 4a1f_A 49 VIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLE 83 (338)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 8899999999999999998764 6777666553
No 447
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=92.30 E-value=0.032 Score=43.74 Aligned_cols=43 Identities=9% Similarity=-0.027 Sum_probs=30.3
Q ss_pred CHHHHHHHHHHhcCcCCcchHHHHhcCccCC-CCCHHHHHHhhC
Q 037859 379 CFEAFKVLAKNYLDIDSHELYAVIESMPAET-NMTPADVAENLM 421 (504)
Q Consensus 379 ~~e~~~~i~~~~l~~~~~~~~~~i~~l~~~~-~~s~a~i~~~l~ 421 (504)
+.++|..|++.++..........+..+++.+ |||+|||..++.
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~ 45 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQ 45 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHH
Confidence 6789999999999754432222344555555 999999998764
No 448
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=92.30 E-value=0.052 Score=51.14 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=21.1
Q ss_pred ccccCCCCCcHHHHHHHHHHhcCC
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLNY 252 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~~ 252 (504)
+.|.|++|+|||++++.++..++.
T Consensus 24 i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 24 ITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHhh
Confidence 567899999999999999987654
No 449
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=92.29 E-value=0.029 Score=56.69 Aligned_cols=23 Identities=30% Similarity=0.622 Sum_probs=20.8
Q ss_pred ccccCCCCCcHHHHHHHHHHhcC
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLN 251 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~ 251 (504)
+.|.||.|||||||.+.||+...
T Consensus 34 ~~llGpnGsGKSTLLr~iaGl~~ 56 (353)
T 1oxx_K 34 FGILGPSGAGKTTFMRIIAGLDV 56 (353)
T ss_dssp EEEECSCHHHHHHHHHHHHTSSC
T ss_pred EEEECCCCCcHHHHHHHHhCCCC
Confidence 67899999999999999998763
No 450
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=92.27 E-value=0.041 Score=49.47 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=20.3
Q ss_pred ccccccCCCCCcHHHHHHHHHHh
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~ 249 (504)
.-+++.|++|+|||+|+.++.+.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45899999999999999999764
No 451
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.27 E-value=0.048 Score=50.33 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=21.9
Q ss_pred ccccccCCCCCcHHHHHHHHHHhcC
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANFLN 251 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~l~ 251 (504)
+-+++.|+||+|||||+.+++..+.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3578999999999999999998763
No 452
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=92.27 E-value=0.056 Score=47.91 Aligned_cols=22 Identities=14% Similarity=0.308 Sum_probs=19.5
Q ss_pred cccccCCCCCcHHHHHHHHHHh
Q 037859 228 GYLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~ 249 (504)
-+++.|+||+|||+|+.++.+.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999853
No 453
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=92.26 E-value=0.16 Score=49.04 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=19.7
Q ss_pred cccccCCCCCcHHHHHHHHHHh
Q 037859 228 GYLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~ 249 (504)
.+.|.|+||+|||||+.++.+.
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999864
No 454
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=92.25 E-value=0.039 Score=51.04 Aligned_cols=22 Identities=32% Similarity=0.522 Sum_probs=18.7
Q ss_pred cccccCCCCCcHHHHHHH-HHHh
Q 037859 228 GYLLYGPPGTGKSTMIAA-MANF 249 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~a-iA~~ 249 (504)
-+++.|++|+|||+|+.+ +.+.
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 489999999999999999 4443
No 455
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=92.22 E-value=0.049 Score=50.92 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=20.2
Q ss_pred ccccCCCCCcHHHHHHHHHHhc
Q 037859 229 YLLYGPPGTGKSTMIAAMANFL 250 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l 250 (504)
+.|.|++|+||||.++.++..+
T Consensus 6 i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 6 IVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp EEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5678999999999999999887
No 456
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=92.20 E-value=0.04 Score=49.14 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=19.0
Q ss_pred ccccCCCCCcHHHHHHHHHHh
Q 037859 229 YLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~ 249 (504)
+++.|++|+|||+|+.++.+.
T Consensus 4 i~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 688999999999999999864
No 457
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=92.17 E-value=0.042 Score=56.27 Aligned_cols=23 Identities=43% Similarity=0.674 Sum_probs=20.9
Q ss_pred ccccCCCCCcHHHHHHHHHHhcC
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLN 251 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~ 251 (504)
+.|.||.|||||||.+.||+.+.
T Consensus 50 ~~llGpsGsGKSTLLr~iaGl~~ 72 (390)
T 3gd7_A 50 VGLLGRTGSGKSTLLSAFLRLLN 72 (390)
T ss_dssp EEEEESTTSSHHHHHHHHHTCSE
T ss_pred EEEECCCCChHHHHHHHHhCCCC
Confidence 77999999999999999998653
No 458
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=92.14 E-value=0.06 Score=48.44 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=19.7
Q ss_pred cccccCCCCCcHHHHHHHHHHh
Q 037859 228 GYLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~ 249 (504)
-+++.|++|+|||+|+..+.+.
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 4899999999999999999864
No 459
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=92.10 E-value=0.06 Score=47.59 Aligned_cols=22 Identities=14% Similarity=0.267 Sum_probs=19.7
Q ss_pred cccccCCCCCcHHHHHHHHHHh
Q 037859 228 GYLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~ 249 (504)
-+++.|++|+|||+|+.++.+.
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999999864
No 460
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=92.04 E-value=0.021 Score=52.25 Aligned_cols=22 Identities=23% Similarity=0.370 Sum_probs=19.4
Q ss_pred cccccCCCCCcHHHHHHHHHHh
Q 037859 228 GYLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~ 249 (504)
-+.|.||+|+|||||++++++.
T Consensus 28 ~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 28 EVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999998764
No 461
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=92.02 E-value=0.16 Score=46.71 Aligned_cols=32 Identities=31% Similarity=0.344 Sum_probs=25.4
Q ss_pred ccccCCCCCcHHHHHHHHHHhc---CCcEEEEecc
Q 037859 229 YLLYGPPGTGKSTMIAAMANFL---NYDVYDLELT 260 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~ 260 (504)
+.|.|+.|+||||.++.++..| |.+++...-.
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~treP 37 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREP 37 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 3477999999999999999887 6676655443
No 462
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=92.01 E-value=0.047 Score=48.28 Aligned_cols=22 Identities=23% Similarity=0.270 Sum_probs=19.8
Q ss_pred cccccCCCCCcHHHHHHHHHHh
Q 037859 228 GYLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~ 249 (504)
-+++.|+||+|||+|+..+.+.
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999874
No 463
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=91.99 E-value=0.095 Score=51.45 Aligned_cols=35 Identities=23% Similarity=0.336 Sum_probs=27.3
Q ss_pred cccccccCCCCCcHHHHHHHHHHhc---CCcEEEEecc
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFL---NYDVYDLELT 260 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~ 260 (504)
++-+.+.||+|+|||+++..+|..+ +..+..+++.
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d 135 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAAD 135 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 4567788999999999999999876 5566655543
No 464
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=91.97 E-value=0.064 Score=48.19 Aligned_cols=22 Identities=18% Similarity=0.175 Sum_probs=19.5
Q ss_pred cccccCCCCCcHHHHHHHHHHh
Q 037859 228 GYLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~ 249 (504)
-++|.|++|+|||+|+..+.+.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999888764
No 465
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=91.96 E-value=0.081 Score=56.61 Aligned_cols=30 Identities=37% Similarity=0.458 Sum_probs=24.7
Q ss_pred ccccCCCCCcHHHHHHHHHHhcC---CcEEEEe
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLN---YDVYDLE 258 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~---~~i~~l~ 258 (504)
++|.|+||+|||++++.++..++ .+++.++
T Consensus 375 I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld 407 (546)
T 2gks_A 375 VWLTGLPCAGKSTIAEILATMLQARGRKVTLLD 407 (546)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred EEccCCCCCCHHHHHHHHHHHhhhcCCeEEEEC
Confidence 67899999999999999998774 4555554
No 466
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=91.94 E-value=0.064 Score=48.63 Aligned_cols=22 Identities=23% Similarity=0.520 Sum_probs=20.0
Q ss_pred cccccCCCCCcHHHHHHHHHHh
Q 037859 228 GYLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~ 249 (504)
-+++.|++|+|||+|+.++.+.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4889999999999999999874
No 467
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=91.93 E-value=0.15 Score=46.30 Aligned_cols=24 Identities=25% Similarity=0.275 Sum_probs=18.0
Q ss_pred cccccccCCCCCcHHHHH-HHHHHh
Q 037859 226 KKGYLLYGPPGTGKSTMI-AAMANF 249 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla-~aiA~~ 249 (504)
.+.+++.+|+|+|||..+ ..+...
T Consensus 38 ~~~~li~~~TGsGKT~~~~~~~~~~ 62 (207)
T 2gxq_A 38 GKDLIGQARTGTGKTLAFALPIAER 62 (207)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEECCCCChHHHHHHHHHHHH
Confidence 567999999999999863 334444
No 468
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=91.91 E-value=0.21 Score=45.93 Aligned_cols=22 Identities=18% Similarity=0.258 Sum_probs=17.6
Q ss_pred cccccccCCCCCcHHHHHHHHH
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMA 247 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA 247 (504)
.+.+++.+|+|+|||..+-..+
T Consensus 51 ~~~~li~~~TGsGKT~~~~~~~ 72 (220)
T 1t6n_A 51 GMDVLCQAKSGMGKTAVFVLAT 72 (220)
T ss_dssp TCCEEEECCTTSCHHHHHHHHH
T ss_pred CCCEEEECCCCCchhhhhhHHH
Confidence 5679999999999998655444
No 469
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=91.88 E-value=0.066 Score=53.07 Aligned_cols=28 Identities=25% Similarity=0.341 Sum_probs=23.8
Q ss_pred cccccccCCCCCcHHHHHHHHHHhcCCcE
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFLNYDV 254 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l~~~i 254 (504)
.+|+||.|++|+|||+++.++... |..+
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~-g~~l 171 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR-GHRL 171 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT-TCEE
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc-CCce
Confidence 578999999999999999999875 5443
No 470
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=91.85 E-value=0.052 Score=54.91 Aligned_cols=24 Identities=29% Similarity=0.515 Sum_probs=21.3
Q ss_pred cccccCCCCCcHHHHHHHHHHhcC
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFLN 251 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l~ 251 (504)
-+.|.||+|+|||||+++|++...
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 478999999999999999998654
No 471
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=91.83 E-value=0.09 Score=51.80 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=19.3
Q ss_pred cccccCCCCCcHHHHHHHHHHh
Q 037859 228 GYLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~ 249 (504)
-++|.|+||+|||+|+.++.+.
T Consensus 5 KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 5 KLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEECCTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998654
No 472
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=91.80 E-value=0.12 Score=47.00 Aligned_cols=37 Identities=22% Similarity=0.327 Sum_probs=26.3
Q ss_pred cChhHHHHHHHhh-cccccccCCCCCcHHHHHHHHHHh
Q 037859 213 METKKKEEIKKDL-KKGYLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 213 ~~~~~k~~i~~~l-~rg~LL~GPpGtGKTsla~aiA~~ 249 (504)
+.+.+++.+-..+ .+.+++.+|+|+|||.++...+..
T Consensus 34 l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~ 71 (216)
T 3b6e_A 34 LRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKD 71 (216)
T ss_dssp CCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHH
Confidence 3444444444333 467999999999999988877654
No 473
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.78 E-value=0.067 Score=48.74 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=19.8
Q ss_pred cccccCCCCCcHHHHHHHHHHh
Q 037859 228 GYLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~ 249 (504)
-+++.|+||+|||+|+.++.+.
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999853
No 474
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=91.78 E-value=0.068 Score=48.12 Aligned_cols=22 Identities=18% Similarity=0.326 Sum_probs=20.1
Q ss_pred cccccCCCCCcHHHHHHHHHHh
Q 037859 228 GYLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~ 249 (504)
-+++.|+||+|||+|+.++.+.
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999999874
No 475
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=91.78 E-value=0.049 Score=53.96 Aligned_cols=29 Identities=34% Similarity=0.345 Sum_probs=23.7
Q ss_pred cccccccCCCCCcHHHHHHHHHHhcCCcEE
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFLNYDVY 255 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l~~~i~ 255 (504)
.+|+||.||+|+|||++|.++.. -|..++
T Consensus 147 g~gvli~G~sG~GKStlal~l~~-~G~~lv 175 (312)
T 1knx_A 147 GVGVLLTGRSGIGKSECALDLIN-KNHLFV 175 (312)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHT-TTCEEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH-cCCEEE
Confidence 68999999999999999998865 354443
No 476
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=91.69 E-value=0.059 Score=56.46 Aligned_cols=25 Identities=20% Similarity=0.477 Sum_probs=22.3
Q ss_pred ccc--ccccCCCCCcHHHHHHHHHHhc
Q 037859 226 KKG--YLLYGPPGTGKSTMIAAMANFL 250 (504)
Q Consensus 226 ~rg--~LL~GPpGtGKTsla~aiA~~l 250 (504)
+.| +.|.||.|+|||||++.|++.+
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 445 8899999999999999999986
No 477
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=91.67 E-value=0.045 Score=53.70 Aligned_cols=22 Identities=23% Similarity=0.486 Sum_probs=20.6
Q ss_pred ccccCCCCCcHHHHHHHHHHhc
Q 037859 229 YLLYGPPGTGKSTMIAAMANFL 250 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l 250 (504)
+.|.||.|+|||||++.|++.+
T Consensus 67 ~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 67 LAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 7899999999999999999876
No 478
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=91.66 E-value=0.31 Score=51.12 Aligned_cols=37 Identities=30% Similarity=0.402 Sum_probs=28.6
Q ss_pred HHHHhh---ccc--ccccCCCCCcHHHH-HHHHHHhcCCcEEE
Q 037859 220 EIKKDL---KKG--YLLYGPPGTGKSTM-IAAMANFLNYDVYD 256 (504)
Q Consensus 220 ~i~~~l---~rg--~LL~GPpGtGKTsl-a~aiA~~l~~~i~~ 256 (504)
++++.+ .|| .++.|++|||||+| ...|++..+.+++.
T Consensus 151 raID~l~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~~~dv~~ 193 (502)
T 2qe7_A 151 KAIDSMIPIGRGQRELIIGDRQTGKTTIAIDTIINQKGQDVIC 193 (502)
T ss_dssp HHHHHSSCCBTTCBCEEEECSSSCHHHHHHHHHHGGGSCSEEE
T ss_pred eecccccccccCCEEEEECCCCCCchHHHHHHHHHhhcCCcEE
Confidence 344544 455 89999999999999 57999998877543
No 479
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=91.64 E-value=0.054 Score=48.29 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=20.1
Q ss_pred ccccccCCCCCcHHHHHHHHHHh
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~ 249 (504)
.-+++.|+||+|||+|+.++.+.
T Consensus 19 ~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 19 LRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999753
No 480
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=90.93 E-value=0.033 Score=50.76 Aligned_cols=22 Identities=14% Similarity=0.323 Sum_probs=19.1
Q ss_pred ccccccCCCCCcHHHHHHHHHH
Q 037859 227 KGYLLYGPPGTGKSTMIAAMAN 248 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~ 248 (504)
--+++.|+||+|||+|+.++.+
T Consensus 31 ~ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 31 IKCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 3589999999999999988864
No 481
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=91.63 E-value=0.064 Score=47.49 Aligned_cols=21 Identities=19% Similarity=0.320 Sum_probs=19.2
Q ss_pred cccccCCCCCcHHHHHHHHHH
Q 037859 228 GYLLYGPPGTGKSTMIAAMAN 248 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~ 248 (504)
-++|.|+||+|||+|+.++.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 488999999999999999985
No 482
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=91.62 E-value=0.089 Score=51.72 Aligned_cols=35 Identities=34% Similarity=0.400 Sum_probs=26.1
Q ss_pred HHHHHHhh-cccccccCCCCCcHHHHHHHHHHhcCC
Q 037859 218 KEEIKKDL-KKGYLLYGPPGTGKSTMIAAMANFLNY 252 (504)
Q Consensus 218 k~~i~~~l-~rg~LL~GPpGtGKTsla~aiA~~l~~ 252 (504)
.+++...+ ..-+.|.||+|+|||||+++|++....
T Consensus 160 v~~lf~~l~geiv~l~G~sG~GKSTll~~l~g~~~~ 195 (301)
T 1u0l_A 160 IEELKEYLKGKISTMAGLSGVGKSSLLNAINPGLKL 195 (301)
T ss_dssp HHHHHHHHSSSEEEEECSTTSSHHHHHHHHSTTCCC
T ss_pred HHHHHHHhcCCeEEEECCCCCcHHHHHHHhcccccc
Confidence 34444444 334678999999999999999987643
No 483
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=91.57 E-value=0.21 Score=46.07 Aligned_cols=23 Identities=26% Similarity=0.257 Sum_probs=17.5
Q ss_pred cccccccCCCCCcHHHH-HHHHHH
Q 037859 226 KKGYLLYGPPGTGKSTM-IAAMAN 248 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsl-a~aiA~ 248 (504)
.+.+++.+|+|+|||.. +-.+..
T Consensus 51 ~~~~lv~~pTGsGKT~~~~~~~l~ 74 (224)
T 1qde_A 51 GHDVLAQAQSGTGKTGTFSIAALQ 74 (224)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEECCCCCcHHHHHHHHHHH
Confidence 56799999999999976 333443
No 484
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=91.52 E-value=0.087 Score=54.88 Aligned_cols=37 Identities=22% Similarity=0.229 Sum_probs=28.3
Q ss_pred hhccc--ccccCCCCCcHHHHHHHHHHhc---CCcEEEEecc
Q 037859 224 DLKKG--YLLYGPPGTGKSTMIAAMANFL---NYDVYDLELT 260 (504)
Q Consensus 224 ~l~rg--~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~ 260 (504)
-+++| +++.|+||+|||+++..+|... |.++..+++.
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE 234 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 234 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC
Confidence 34555 8899999999999999887654 6677776553
No 485
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=91.42 E-value=0.073 Score=53.58 Aligned_cols=22 Identities=50% Similarity=0.788 Sum_probs=20.0
Q ss_pred ccccCCCCCcHHHHHHHHHHhc
Q 037859 229 YLLYGPPGTGKSTMIAAMANFL 250 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l 250 (504)
+.|.||||+|||||..++++.+
T Consensus 77 v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 77 VGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999864
No 486
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=91.42 E-value=0.067 Score=49.54 Aligned_cols=23 Identities=26% Similarity=0.541 Sum_probs=20.5
Q ss_pred cccccCCCCCcHHHHHHHHHHhc
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFL 250 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l 250 (504)
-+++.|++|+|||+|+..++..+
T Consensus 40 ~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 40 AFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 47788999999999999999875
No 487
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=91.42 E-value=0.068 Score=49.08 Aligned_cols=23 Identities=17% Similarity=0.289 Sum_probs=20.6
Q ss_pred ccccccCCCCCcHHHHHHHHHHh
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~ 249 (504)
--+++.|++|+|||+|+.++++.
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999874
No 488
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=91.40 E-value=0.11 Score=53.77 Aligned_cols=35 Identities=23% Similarity=0.336 Sum_probs=28.0
Q ss_pred cccccccCCCCCcHHHHHHHHHHhc---CCcEEEEecc
Q 037859 226 KKGYLLYGPPGTGKSTMIAAMANFL---NYDVYDLELT 260 (504)
Q Consensus 226 ~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~ 260 (504)
++.+++.||+|+||||++..+|..+ +..+..+++.
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D 135 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAAD 135 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeecc
Confidence 4567888999999999999999876 5566666654
No 489
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=91.36 E-value=0.15 Score=46.81 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=20.3
Q ss_pred ccccccCCCCCcHHHHHHHHHHh
Q 037859 227 KGYLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~~ 249 (504)
.-+++.|++|+|||+|+.++.+.
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTC
T ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Confidence 35889999999999999999765
No 490
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=91.26 E-value=0.14 Score=46.98 Aligned_cols=31 Identities=16% Similarity=0.140 Sum_probs=24.0
Q ss_pred cccccCCCCCcHHHHHHHHHHhc---CCcEEEEe
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFL---NYDVYDLE 258 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~ 258 (504)
-++++||+|+|||+.+..+|..+ +..++.+.
T Consensus 10 i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k 43 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFK 43 (191)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 36789999999999888887765 66665553
No 491
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=91.23 E-value=0.11 Score=51.01 Aligned_cols=33 Identities=27% Similarity=0.395 Sum_probs=24.8
Q ss_pred HHHHHHhh-cccccccCCCCCcHHHHHHHHHHhcC
Q 037859 218 KEEIKKDL-KKGYLLYGPPGTGKSTMIAAMANFLN 251 (504)
Q Consensus 218 k~~i~~~l-~rg~LL~GPpGtGKTsla~aiA~~l~ 251 (504)
.+++.+.+ ..-+.|.||+|+|||||+++|+ .+.
T Consensus 156 i~~L~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 156 IDELVDYLEGFICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp HHHHHHHTTTCEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred HHHHHhhccCcEEEEECCCCCCHHHHHHHHH-Hhh
Confidence 34455554 3346789999999999999999 654
No 492
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=91.21 E-value=0.076 Score=49.84 Aligned_cols=28 Identities=29% Similarity=0.521 Sum_probs=22.6
Q ss_pred ccccCCCCCcHHHHHHHHHHhcCCcEEEE
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLNYDVYDL 257 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~~~i~~l 257 (504)
+.|.||.|+||||+++.|++. +..+...
T Consensus 23 i~i~G~~GsGKSTl~~~L~~~-~g~v~~~ 50 (230)
T 2vp4_A 23 VLIEGNIGSGKTTYLNHFEKY-KNDICLL 50 (230)
T ss_dssp EEEECSTTSCHHHHHHTTGGG-TTTEEEE
T ss_pred EEEECCCCCCHHHHHHHHHhc-cCCeEEE
Confidence 668899999999999999987 4444443
No 493
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=91.18 E-value=0.069 Score=56.82 Aligned_cols=26 Identities=27% Similarity=0.424 Sum_probs=22.2
Q ss_pred hccc--ccccCCCCCcHHHHHHHHHHhc
Q 037859 225 LKKG--YLLYGPPGTGKSTMIAAMANFL 250 (504)
Q Consensus 225 l~rg--~LL~GPpGtGKTsla~aiA~~l 250 (504)
+++| ++|.||||+|||+|++.+|...
T Consensus 278 i~~G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 278 FFKDSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3555 7899999999999999998765
No 494
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=91.17 E-value=0.073 Score=53.95 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=20.9
Q ss_pred ccccCCCCCcHHHHHHHHHHhcC
Q 037859 229 YLLYGPPGTGKSTMIAAMANFLN 251 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l~ 251 (504)
+-|.||.|+|||||+++|++.+.
T Consensus 57 ~~IiGpnGaGKSTLlr~i~GL~~ 79 (366)
T 3tui_C 57 YGVIGASGAGKSTLIRCVNLLER 79 (366)
T ss_dssp EEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEcCCCchHHHHHHHHhcCCC
Confidence 77999999999999999998764
No 495
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=91.05 E-value=0.12 Score=51.80 Aligned_cols=30 Identities=33% Similarity=0.514 Sum_probs=23.6
Q ss_pred ccccCCCCCcHHHHHHHHHHhc---CCcEEEEe
Q 037859 229 YLLYGPPGTGKSTMIAAMANFL---NYDVYDLE 258 (504)
Q Consensus 229 ~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~ 258 (504)
+.+.||||+||||++.+++..+ +..+..++
T Consensus 59 i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~ 91 (341)
T 2p67_A 59 LGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIA 91 (341)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 6789999999999999999765 44444443
No 496
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=91.02 E-value=0.09 Score=47.60 Aligned_cols=22 Identities=36% Similarity=0.537 Sum_probs=19.5
Q ss_pred cccccCCCCCcHHHHHHHHHHh
Q 037859 228 GYLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~ 249 (504)
-++|.|+||+|||+|+..+++.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999999863
No 497
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=91.00 E-value=0.052 Score=53.74 Aligned_cols=25 Identities=36% Similarity=0.663 Sum_probs=22.0
Q ss_pred cccccCCCCCcHHHHHHHHHHhcCC
Q 037859 228 GYLLYGPPGTGKSTMIAAMANFLNY 252 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~l~~ 252 (504)
-+.|.||.|+|||||++.|++.+..
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl~~p 106 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRFYDI 106 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTSSCC
T ss_pred EEEEECCCCchHHHHHHHHHcCCCC
Confidence 3789999999999999999997743
No 498
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.91 E-value=0.053 Score=48.05 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=19.2
Q ss_pred ccccccCCCCCcHHHHHHHHHH
Q 037859 227 KGYLLYGPPGTGKSTMIAAMAN 248 (504)
Q Consensus 227 rg~LL~GPpGtGKTsla~aiA~ 248 (504)
.-+++.|++|+|||+|+.++.+
T Consensus 19 ~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 19 LRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3589999999999999998863
No 499
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=90.90 E-value=0.079 Score=47.92 Aligned_cols=22 Identities=18% Similarity=0.389 Sum_probs=19.2
Q ss_pred cccccCCCCCcHHHHHHHHHHh
Q 037859 228 GYLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~ 249 (504)
-+++.|++|+|||+|+.++.+.
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999753
No 500
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=90.89 E-value=0.085 Score=47.39 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=20.1
Q ss_pred cccccCCCCCcHHHHHHHHHHh
Q 037859 228 GYLLYGPPGTGKSTMIAAMANF 249 (504)
Q Consensus 228 g~LL~GPpGtGKTsla~aiA~~ 249 (504)
-+++.|++|+|||+|+.++.+.
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999865
Done!