Query 037860
Match_columns 97
No_of_seqs 107 out of 1375
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 05:05:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037860.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037860hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0156 Cytochrome P450 CYP2 s 100.0 7.9E-33 1.7E-37 194.6 9.3 93 1-94 371-463 (489)
2 KOG0158 Cytochrome P450 CYP3/C 100.0 1.5E-31 3.2E-36 187.6 9.3 92 1-93 378-470 (499)
3 PF00067 p450: Cytochrome P450 100.0 6.1E-31 1.3E-35 179.6 10.4 95 1-95 347-441 (463)
4 PLN02500 cytochrome P450 90B1 100.0 4.2E-31 9.1E-36 185.6 9.8 95 1-95 368-468 (490)
5 PLN02183 ferulate 5-hydroxylas 100.0 1.3E-30 2.8E-35 184.2 10.1 95 1-95 388-483 (516)
6 PLN02971 tryptophan N-hydroxyl 100.0 1.5E-30 3.2E-35 185.0 10.4 95 1-95 412-508 (543)
7 PLN02394 trans-cinnamate 4-mon 100.0 2.5E-30 5.3E-35 182.0 10.1 94 2-95 379-474 (503)
8 PTZ00404 cytochrome P450; Prov 100.0 3.3E-30 7.2E-35 180.6 10.4 89 2-95 369-458 (482)
9 PLN02966 cytochrome P450 83A1 100.0 2.2E-30 4.7E-35 182.5 9.5 95 1-95 376-471 (502)
10 PLN02774 brassinosteroid-6-oxi 100.0 3.1E-30 6.7E-35 180.3 10.0 92 1-95 351-442 (463)
11 PLN02169 fatty acid (omega-1)- 100.0 3.9E-30 8.4E-35 181.4 9.8 93 3-95 382-476 (500)
12 PLN03234 cytochrome P450 83B1; 100.0 6.2E-30 1.4E-34 179.8 9.9 93 2-94 374-469 (499)
13 PLN00168 Cytochrome P450; Prov 100.0 6.4E-30 1.4E-34 180.8 9.9 95 1-95 392-491 (519)
14 KOG0157 Cytochrome P450 CYP4/C 100.0 6.9E-30 1.5E-34 180.2 8.8 94 1-94 376-471 (497)
15 PLN03141 3-epi-6-deoxocathaste 100.0 1.1E-29 2.3E-34 177.0 9.4 91 1-95 339-429 (452)
16 PLN00110 flavonoid 3',5'-hydro 100.0 1.8E-29 4E-34 178.1 10.4 94 2-95 375-471 (504)
17 PLN03195 fatty acid omega-hydr 100.0 1.2E-29 2.6E-34 179.1 8.9 93 2-94 397-491 (516)
18 PLN02290 cytokinin trans-hydro 100.0 2.4E-29 5.1E-34 177.5 9.6 91 1-94 399-490 (516)
19 PLN02687 flavonoid 3'-monooxyg 100.0 4E-29 8.6E-34 176.7 10.2 94 1-94 382-479 (517)
20 PLN03018 homomethionine N-hydr 100.0 6.8E-29 1.5E-33 176.4 10.7 94 1-94 399-497 (534)
21 PLN02655 ent-kaurene oxidase 100.0 4.5E-29 9.7E-34 174.5 9.6 93 1-94 346-438 (466)
22 PLN02738 carotene beta-ring hy 100.0 7.6E-29 1.6E-33 178.9 10.5 94 2-95 475-570 (633)
23 PLN02196 abscisic acid 8'-hydr 100.0 4.9E-29 1.1E-33 174.3 8.6 89 1-94 351-439 (463)
24 PLN02302 ent-kaurenoic acid ox 100.0 1E-28 2.2E-33 173.0 10.1 90 1-94 375-464 (490)
25 PLN02987 Cytochrome P450, fami 100.0 2.9E-28 6.2E-33 171.1 10.8 94 1-95 354-447 (472)
26 PLN02426 cytochrome P450, fami 100.0 1.5E-28 3.3E-33 173.6 8.8 92 2-93 379-472 (502)
27 PLN03112 cytochrome P450 famil 100.0 3.5E-28 7.5E-33 171.6 10.2 94 1-94 381-478 (514)
28 PLN02936 epsilon-ring hydroxyl 100.0 7.9E-28 1.7E-32 169.2 9.8 94 2-95 363-458 (489)
29 KOG0159 Cytochrome P450 CYP11/ 99.9 6.2E-28 1.3E-32 168.4 8.1 94 2-96 402-495 (519)
30 COG2124 CypX Cytochrome P450 [ 99.9 6E-26 1.3E-30 157.2 8.1 84 1-94 304-387 (411)
31 KOG0684 Cytochrome P450 [Secon 99.9 1.5E-25 3.3E-30 154.3 8.2 93 2-94 359-459 (486)
32 PLN02648 allene oxide synthase 99.9 1E-24 2.2E-29 153.6 9.5 92 2-96 359-464 (480)
33 PF12508 DUF3714: Protein of u 81.7 1.6 3.5E-05 28.2 2.5 19 1-19 76-94 (200)
34 PF08492 SRP72: SRP72 RNA-bind 75.3 1.2 2.6E-05 23.1 0.4 7 38-44 44-50 (59)
35 PF11138 DUF2911: Protein of u 73.9 4.2 9E-05 25.0 2.6 38 2-40 54-98 (145)
36 COG2101 SPT15 TATA-box binding 64.2 2.4 5.3E-05 26.8 0.2 37 33-69 33-69 (185)
37 KOG3302 TATA-box binding prote 62.2 2.4 5.2E-05 27.3 -0.1 54 33-87 48-104 (200)
38 PF14550 Peptidase_U35_2: Puta 61.5 6.2 0.00013 23.5 1.5 19 2-20 75-93 (122)
39 TIGR03779 Bac_Flav_CT_M Bacter 59.2 10 0.00022 27.3 2.5 19 1-19 279-297 (410)
40 PRK14759 potassium-transportin 56.7 4.7 0.0001 17.8 0.4 6 37-42 24-29 (29)
41 PF09201 SRX: SRX; InterPro: 55.9 14 0.00031 22.6 2.4 24 64-87 18-41 (148)
42 cd00652 TBP_TLF TATA box bindi 55.7 11 0.00024 23.6 2.1 55 35-90 29-86 (174)
43 PF12444 Sox_N: Sox developmen 55.3 9 0.0002 21.3 1.4 20 74-93 60-79 (84)
44 cd04518 TBP_archaea archaeal T 54.6 3.3 7.2E-05 26.1 -0.4 55 35-90 29-86 (174)
45 PLN00062 TATA-box-binding prot 54.3 9.5 0.0002 24.2 1.6 54 35-89 29-85 (179)
46 PF09604 Potass_KdpF: F subuni 51.8 6.3 0.00014 16.7 0.4 6 37-42 20-25 (25)
47 PRK00394 transcription factor; 50.2 8.7 0.00019 24.3 1.0 34 35-68 28-61 (179)
48 PF11227 DUF3025: Protein of u 46.5 14 0.0003 24.2 1.5 20 22-41 192-211 (212)
49 PF00352 TBP: Transcription fa 46.0 8.1 0.00018 21.2 0.3 36 34-69 30-65 (86)
50 PF01629 DUF22: Domain of unkn 38.0 33 0.00072 20.1 2.0 38 5-42 58-95 (112)
51 TIGR02115 potass_kdpF K+-trans 37.4 7.5 0.00016 16.7 -0.5 7 37-43 19-25 (26)
52 PF02663 FmdE: FmdE, Molybdenu 36.9 31 0.00068 20.3 1.9 21 63-83 4-24 (131)
53 cd04516 TBP_eukaryotes eukaryo 36.2 8.5 0.00018 24.3 -0.7 55 35-90 29-86 (174)
54 KOG3506 40S ribosomal protein 34.9 18 0.00039 18.4 0.5 10 58-67 13-22 (56)
55 PF02311 AraC_binding: AraC-li 27.6 80 0.0017 17.5 2.6 22 5-26 37-60 (136)
56 PF07886 BA14K: BA14K-like pro 27.5 71 0.0015 14.2 1.8 14 54-67 18-31 (31)
57 cd04517 TLF TBP-like factors ( 25.3 55 0.0012 20.6 1.7 53 35-89 30-85 (174)
No 1
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=7.9e-33 Score=194.57 Aligned_cols=93 Identities=38% Similarity=0.561 Sum_probs=87.0
Q ss_pred CCceEEcCEEEcCCCEEEeehhhhccCCCCCCCCCCCCCCCcCCCCCCCCCCccceeeccCCCCcCCcHHHHHHHHHHHH
Q 037860 1 LEDREIANFIALKCAKVLVNVWATVRYESIMDNACYFTPGRLLGSDIDFKGKNFELIPFGAGWQIYPGLPLAIKMLDLML 80 (97)
Q Consensus 1 ~~d~~l~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~P~R~~~~~~~~~~~~~~~~~fg~G~~~C~G~~~a~~~~~~~~ 80 (97)
++|++++||.|||||.|+++.|++||||++|++|++|+||||++++ +.++....++|||.|+|.|||..+|.+++.+++
T Consensus 371 ~~d~~i~Gy~IPkgT~v~vn~~ai~rDp~vw~dP~eF~PERFl~~~-d~~~~~~~~iPFG~GRR~CpG~~La~~~l~l~l 449 (489)
T KOG0156|consen 371 TEDTKIGGYDIPKGTTVLVNLWAIHRDPKVWEDPEEFKPERFLDSN-DGKGLDFKLIPFGSGRRICPGEGLARAELFLFL 449 (489)
T ss_pred cCCeeEcCEEcCCCCEEEEeehhhhcCCccCCCccccChhhhcCCc-cccCCceEecCCCCCcCCCCcHHHHHHHHHHHH
Confidence 4799999999999999999999999999999999999999999875 444566799999999999999999999999999
Q ss_pred HHHHHhCeeecCCC
Q 037860 81 GSFINSLIGSLKTR 94 (97)
Q Consensus 81 ~~ll~~f~~~~~~~ 94 (97)
++|+++|+|+++.+
T Consensus 450 a~llq~F~w~~~~~ 463 (489)
T KOG0156|consen 450 ANLLQRFDWKLPGG 463 (489)
T ss_pred HHHHheeeeecCCC
Confidence 99999999999866
No 2
>KOG0158 consensus Cytochrome P450 CYP3/CYP5/CYP6/CYP9 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.97 E-value=1.5e-31 Score=187.65 Aligned_cols=92 Identities=20% Similarity=0.268 Sum_probs=85.2
Q ss_pred CCceEEc-CEEEcCCCEEEeehhhhccCCCCCCCCCCCCCCCcCCCCCCCCCCccceeeccCCCCcCCcHHHHHHHHHHH
Q 037860 1 LEDREIA-NFIALKCAKVLVNVWATVRYESIMDNACYFTPGRLLGSDIDFKGKNFELIPFGAGWQIYPGLPLAIKMLDLM 79 (97)
Q Consensus 1 ~~d~~l~-g~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~P~R~~~~~~~~~~~~~~~~~fg~G~~~C~G~~~a~~~~~~~ 79 (97)
++|++++ ++.|+||+.|.++.+++||||++|++|++|+||||.+.+.. ...+..|+|||.|+|.|+|++||++|+|+.
T Consensus 378 ~k~~~i~~~~~i~kG~~V~Ip~~alH~Dp~~~p~Pe~F~PERF~~~~~~-~~~~~~ylPFG~GPR~CIGmRfa~mq~K~~ 456 (499)
T KOG0158|consen 378 TKDYEIPGGFVIPKGTPVMIPTYALHHDPEYWPEPEKFKPERFEEENNK-SRHPGAYLPFGVGPRNCIGMRFALMEAKLA 456 (499)
T ss_pred cCceecCCCeEeCCCCEEEeecccccCCcccCCCcccCCCccCCCCccc-ccCCccccCCCCCccccHHHHHHHHHHHHH
Confidence 4789999 99999999999999999999999999999999999976644 235678999999999999999999999999
Q ss_pred HHHHHHhCeeecCC
Q 037860 80 LGSFINSLIGSLKT 93 (97)
Q Consensus 80 ~~~ll~~f~~~~~~ 93 (97)
+++||++|+++..+
T Consensus 457 L~~lL~~f~~~~~~ 470 (499)
T KOG0158|consen 457 LAHLLRNFSFEVCP 470 (499)
T ss_pred HHHHHhhCEEecCC
Confidence 99999999999877
No 3
>PF00067 p450: Cytochrome P450 p450 superfamily signature b-class p450 signature mitochondrial p450 signature E-class p450 group I signature E-class p450 group II signature E-class p450 group IV signature; InterPro: IPR001128 Cytochrome P450 enzymes are a superfamily of haem-containing mono-oxygenases that are found in all kingdoms of life, and which show extraordinary diversity in their reaction chemistry. In mammals, these proteins are found primarily in microsomes of hepatocytes and other cell types, where they oxidise steroids, fatty acids and xenobiotics, and are important for the detoxification and clearance of various compounds, as well as for hormone synthesis and breakdown, cholesterol synthesis and vitamin D metabolism. In plants, these proteins are important for the biosynthesis of several compounds such as hormones, defensive compounds and fatty acids. In bacteria, they are important for several metabolic processes, such as the biosynthesis of antibiotic erythromycin in Saccharopolyspora erythraea (Streptomyces erythraeus). Cytochrome P450 enzymes use haem to oxidise their substrates, using protons derived from NADH or NADPH to split the oxygen so a single atom can be added to a substrate. They also require electrons, which they receive from a variety of redox partners. In certain cases, cytochrome P450 can be fused to its redox partner to produce a bi-functional protein, such as with P450BM-3 from Bacillus megaterium [], which has haem and flavin domains. Organisms produce many different cytochrome P450 enzymes (at least 58 in humans), which together with alternative splicing can provide a wide array of enzymes with different substrate and tissue specificities. Individual cytochrome P450 proteins follow the nomenclature: CYP, followed by a number (family), then a letter (subfamily), and another number (protein); e.g. CYP3A4 is the fourth protein in family 3, subfamily A. In general, family members should share >40% identity, while subfamily members should share >55% identity. Cytochrome P450 proteins can also be grouped by two different schemes. One scheme was based on a taxonomic split: class I (prokaryotic/mitochondrial) and class II (eukaryotic microsomes). The other scheme was based on the number of components in the system: class B (3-components) and class E (2-components). These classes merge to a certain degree. Most prokaryotes and mitochondria (and fungal CYP55) have 3-component systems (class I/class B) - a FAD-containing flavoprotein (NAD(P)H-dependent reductase), an iron-sulphur protein and P450. Most eukaryotic microsomes have 2-component systems (class II/class E) - NADPH:P450 reductase (FAD and FMN-containing flavoprotein) and P450. There are exceptions to this scheme, such as 1-component systems that resemble class E enzymes [, , ]. The class E enzymes can be further subdivided into five sequence clusters, groups I-V, each of which may contain more than one cytochrome P450 family (eg, CYP1 and CYP2 are both found in group I). The divergence of the cytochrome P450 superfamily into B- and E-classes, and further divergence into stable clusters within the E-class, appears to be very ancient, occurring before the appearance of eukaryotes. More information about these proteins can be found at Protein of the Month: Cytochrome P450 [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0020037 heme binding, 0055114 oxidation-reduction process; PDB: 2RFC_B 2RFB_A 3EJB_H 3EJE_H 3EJD_H 1N6B_A 1NR6_A 1DT6_A 3EL3_A 3DBG_B ....
Probab=99.97 E-value=6.1e-31 Score=179.60 Aligned_cols=95 Identities=24% Similarity=0.385 Sum_probs=83.2
Q ss_pred CCceEEcCEEEcCCCEEEeehhhhccCCCCCCCCCCCCCCCcCCCCCCCCCCccceeeccCCCCcCCcHHHHHHHHHHHH
Q 037860 1 LEDREIANFIALKCAKVLVNVWATVRYESIMDNACYFTPGRLLGSDIDFKGKNFELIPFGAGWQIYPGLPLAIKMLDLML 80 (97)
Q Consensus 1 ~~d~~l~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~P~R~~~~~~~~~~~~~~~~~fg~G~~~C~G~~~a~~~~~~~~ 80 (97)
.+|++++|+.||||+.|+++.+++|+|+++|++|++|+|+||++...........++|||.|+|.|+|+++|..++++++
T Consensus 347 ~~d~~l~g~~ip~gt~v~~~~~~~~~d~~~~~dp~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l 426 (463)
T PF00067_consen 347 TEDVTLGGYFIPKGTIVIVSIYALHRDPEYFPDPDEFDPERFLDERGISNRPSFAFLPFGAGPRMCPGRNLAMMEMKVFL 426 (463)
T ss_dssp SSSEEETTEEEETTSEEEEEHHHHTTSTTTSSSTTS--TTGGBTTTSTBCSSSTTSSTTESSTTS-TTHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchHHHHHHHHHHHHH
Confidence 36999999999999999999999999999999999999999998764223356789999999999999999999999999
Q ss_pred HHHHHhCeeecCCCc
Q 037860 81 GSFINSLIGSLKTRT 95 (97)
Q Consensus 81 ~~ll~~f~~~~~~~~ 95 (97)
+.|+++|++++.++.
T Consensus 427 a~ll~~f~~~~~~~~ 441 (463)
T PF00067_consen 427 AKLLRRFDFELVPGS 441 (463)
T ss_dssp HHHHHHEEEEESTTS
T ss_pred HHHHHhCEEEECCCC
Confidence 999999999996543
No 4
>PLN02500 cytochrome P450 90B1
Probab=99.97 E-value=4.2e-31 Score=185.57 Aligned_cols=95 Identities=20% Similarity=0.211 Sum_probs=84.0
Q ss_pred CCceEEcCEEEcCCCEEEeehhhhccCCCCCCCCCCCCCCCcCCCCCCCC------CCccceeeccCCCCcCCcHHHHHH
Q 037860 1 LEDREIANFIALKCAKVLVNVWATVRYESIMDNACYFTPGRLLGSDIDFK------GKNFELIPFGAGWQIYPGLPLAIK 74 (97)
Q Consensus 1 ~~d~~l~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~P~R~~~~~~~~~------~~~~~~~~fg~G~~~C~G~~~a~~ 74 (97)
++|++++||.||||+.|+++.|++||||++|++|++|+||||+++..... ...+.++|||.|+|.|+|+++|..
T Consensus 368 ~~d~~~~G~~IPkGt~V~~~~~~~hrdp~~~~dP~~F~PeRfl~~~~~~~~~~~~~~~~~~~lpFG~G~R~CiG~~~A~~ 447 (490)
T PLN02500 368 LKDVRYKGYDIPSGWKVLPVIAAVHLDSSLYDQPQLFNPWRWQQNNNRGGSSGSSSATTNNFMPFGGGPRLCAGSELAKL 447 (490)
T ss_pred CCCceeCCEEECCCCEEEechhhcccCcccCCCccccChhhccCCCcccccccccCCCCCCCcCCCCCCCCCCcHHHHHH
Confidence 47999999999999999999999999999999999999999986432111 134579999999999999999999
Q ss_pred HHHHHHHHHHHhCeeecCCCc
Q 037860 75 MLDLMLGSFINSLIGSLKTRT 95 (97)
Q Consensus 75 ~~~~~~~~ll~~f~~~~~~~~ 95 (97)
|++++++.|+++|++++.++.
T Consensus 448 el~~~la~ll~~f~~~~~~~~ 468 (490)
T PLN02500 448 EMAVFIHHLVLNFNWELAEAD 468 (490)
T ss_pred HHHHHHHHHHhccEEEEcCCC
Confidence 999999999999999987553
No 5
>PLN02183 ferulate 5-hydroxylase
Probab=99.97 E-value=1.3e-30 Score=184.22 Aligned_cols=95 Identities=33% Similarity=0.634 Sum_probs=84.6
Q ss_pred CCceEEcCEEEcCCCEEEeehhhhccCCCCCCCCCCCCCCCcCCCCCC-CCCCccceeeccCCCCcCCcHHHHHHHHHHH
Q 037860 1 LEDREIANFIALKCAKVLVNVWATVRYESIMDNACYFTPGRLLGSDID-FKGKNFELIPFGAGWQIYPGLPLAIKMLDLM 79 (97)
Q Consensus 1 ~~d~~l~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~P~R~~~~~~~-~~~~~~~~~~fg~G~~~C~G~~~a~~~~~~~ 79 (97)
.+|++++||.|||||.|.++.|++|||+++|++|++|+||||++++.. .....+.++|||.|+|.|+|+++|.+|++++
T Consensus 388 ~~d~~l~g~~IPkGt~V~~~~~~~hrd~~~~~dP~~F~PeRfl~~~~~~~~~~~~~~lpFG~G~R~CiG~~lA~~e~~l~ 467 (516)
T PLN02183 388 AEDAEVAGYFIPKRSRVMINAWAIGRDKNSWEDPDTFKPSRFLKPGVPDFKGSHFEFIPFGSGRRSCPGMQLGLYALDLA 467 (516)
T ss_pred cCceeECCEEECCCCEEEEehhhhcCCccccCCccccCchhhCCCCCccccCCcceecCCCCCCCCCCChHHHHHHHHHH
Confidence 368999999999999999999999999999999999999999964321 1223457999999999999999999999999
Q ss_pred HHHHHHhCeeecCCCc
Q 037860 80 LGSFINSLIGSLKTRT 95 (97)
Q Consensus 80 ~~~ll~~f~~~~~~~~ 95 (97)
++.|+++|++++.++.
T Consensus 468 la~ll~~f~~~~~~~~ 483 (516)
T PLN02183 468 VAHLLHCFTWELPDGM 483 (516)
T ss_pred HHHHHheeEEEcCCCC
Confidence 9999999999987653
No 6
>PLN02971 tryptophan N-hydroxylase
Probab=99.97 E-value=1.5e-30 Score=185.00 Aligned_cols=95 Identities=19% Similarity=0.316 Sum_probs=84.4
Q ss_pred CCceEEcCEEEcCCCEEEeehhhhccCCCCCCCCCCCCCCCcCCCCCC--CCCCccceeeccCCCCcCCcHHHHHHHHHH
Q 037860 1 LEDREIANFIALKCAKVLVNVWATVRYESIMDNACYFTPGRLLGSDID--FKGKNFELIPFGAGWQIYPGLPLAIKMLDL 78 (97)
Q Consensus 1 ~~d~~l~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~P~R~~~~~~~--~~~~~~~~~~fg~G~~~C~G~~~a~~~~~~ 78 (97)
++|++++||.||||+.|+++.|++|||+++|++|++|+||||+++... .....+.++|||.|+|.|+|+++|..|+++
T Consensus 412 ~~d~~~~G~~IpkGt~v~~~~~~~~~d~~~~~dP~~F~PeRfl~~~~~~~~~~~~~~~~pFG~G~R~C~G~~lA~~e~~~ 491 (543)
T PLN02971 412 LSDTTVAGYHIPKGSQVLLSRYGLGRNPKVWSDPLSFKPERHLNECSEVTLTENDLRFISFSTGKRGCAAPALGTAITTM 491 (543)
T ss_pred CCCeeECCEEECCCCEEEECcHHhcCChhhCCCccccCcccCCCCCccccccCCCCccCCCCCCCCCCCCHHHHHHHHHH
Confidence 379999999999999999999999999999999999999999964322 112345799999999999999999999999
Q ss_pred HHHHHHHhCeeecCCCc
Q 037860 79 MLGSFINSLIGSLKTRT 95 (97)
Q Consensus 79 ~~~~ll~~f~~~~~~~~ 95 (97)
+++.|+++|+++++++.
T Consensus 492 ~la~ll~~f~~~~~~~~ 508 (543)
T PLN02971 492 MLARLLQGFKWKLAGSE 508 (543)
T ss_pred HHHHHHHhCEEEeCCCC
Confidence 99999999999987643
No 7
>PLN02394 trans-cinnamate 4-monooxygenase
Probab=99.97 E-value=2.5e-30 Score=182.00 Aligned_cols=94 Identities=27% Similarity=0.521 Sum_probs=83.7
Q ss_pred CceEEcCEEEcCCCEEEeehhhhccCCCCCCCCCCCCCCCcCCCCCC--CCCCccceeeccCCCCcCCcHHHHHHHHHHH
Q 037860 2 EDREIANFIALKCAKVLVNVWATVRYESIMDNACYFTPGRLLGSDID--FKGKNFELIPFGAGWQIYPGLPLAIKMLDLM 79 (97)
Q Consensus 2 ~d~~l~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~P~R~~~~~~~--~~~~~~~~~~fg~G~~~C~G~~~a~~~~~~~ 79 (97)
+|++++||.|||||.|.++.|++|||+++|++|++|+||||++++.. .+.....++|||.|+|.|+|+++|.+|++++
T Consensus 379 ~d~~i~g~~IP~Gt~V~~~~~~~~rd~~~~~~P~~F~PeRwl~~~~~~~~~~~~~~~~pFg~G~R~CiG~~~A~~e~~~~ 458 (503)
T PLN02394 379 EDAKLGGYDIPAESKILVNAWWLANNPELWKNPEEFRPERFLEEEAKVEANGNDFRFLPFGVGRRSCPGIILALPILGIV 458 (503)
T ss_pred CCcccCCEEeCCCCEEEEchHHHhCCcccCCCccccCccccCCCCCcccccCCCCceeCCCCCCCCCCCHHHHHHHHHHH
Confidence 58899999999999999999999999999999999999999864321 1223457999999999999999999999999
Q ss_pred HHHHHHhCeeecCCCc
Q 037860 80 LGSFINSLIGSLKTRT 95 (97)
Q Consensus 80 ~~~ll~~f~~~~~~~~ 95 (97)
++.|+++|++++.++.
T Consensus 459 la~ll~~f~~~~~~~~ 474 (503)
T PLN02394 459 LGRLVQNFELLPPPGQ 474 (503)
T ss_pred HHHHHHHceeEeCCCC
Confidence 9999999999987664
No 8
>PTZ00404 cytochrome P450; Provisional
Probab=99.97 E-value=3.3e-30 Score=180.59 Aligned_cols=89 Identities=26% Similarity=0.319 Sum_probs=82.4
Q ss_pred CceEE-cCEEEcCCCEEEeehhhhccCCCCCCCCCCCCCCCcCCCCCCCCCCccceeeccCCCCcCCcHHHHHHHHHHHH
Q 037860 2 EDREI-ANFIALKCAKVLVNVWATVRYESIMDNACYFTPGRLLGSDIDFKGKNFELIPFGAGWQIYPGLPLAIKMLDLML 80 (97)
Q Consensus 2 ~d~~l-~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~P~R~~~~~~~~~~~~~~~~~fg~G~~~C~G~~~a~~~~~~~~ 80 (97)
+|+++ +|+.||||+.|+++.+++||||++|++|++|+||||++.. ....++|||.|+|.|+|+++|.+|+++++
T Consensus 369 ~d~~l~~g~~Ip~Gt~V~~~~~a~hrdp~~~~dP~~F~PeRwl~~~-----~~~~~~pFg~G~R~C~G~~~A~~e~~~~l 443 (482)
T PTZ00404 369 NDIIIGGGHFIPKDAQILINYYSLGRNEKYFENPEQFDPSRFLNPD-----SNDAFMPFSIGPRNCVGQQFAQDELYLAF 443 (482)
T ss_pred CCEEecCCeEECCCCEEEeeHHHhhCCccccCCccccCccccCCCC-----CCCceeccCCCCCCCccHHHHHHHHHHHH
Confidence 68999 9999999999999999999999999999999999998642 34579999999999999999999999999
Q ss_pred HHHHHhCeeecCCCc
Q 037860 81 GSFINSLIGSLKTRT 95 (97)
Q Consensus 81 ~~ll~~f~~~~~~~~ 95 (97)
+.|+++|++++++++
T Consensus 444 a~ll~~f~~~~~~~~ 458 (482)
T PTZ00404 444 SNIILNFKLKSIDGK 458 (482)
T ss_pred HHHHHhcEEecCCCC
Confidence 999999999987654
No 9
>PLN02966 cytochrome P450 83A1
Probab=99.97 E-value=2.2e-30 Score=182.48 Aligned_cols=95 Identities=33% Similarity=0.580 Sum_probs=84.9
Q ss_pred CCceEEcCEEEcCCCEEEeehhhhccCCCCC-CCCCCCCCCCcCCCCCCCCCCccceeeccCCCCcCCcHHHHHHHHHHH
Q 037860 1 LEDREIANFIALKCAKVLVNVWATVRYESIM-DNACYFTPGRLLGSDIDFKGKNFELIPFGAGWQIYPGLPLAIKMLDLM 79 (97)
Q Consensus 1 ~~d~~l~g~~ip~g~~v~~~~~~~~~d~~~~-~~p~~f~P~R~~~~~~~~~~~~~~~~~fg~G~~~C~G~~~a~~~~~~~ 79 (97)
.+|++++|+.|||||.|.++.|++||||++| ++|++|+||||++...........++|||.|+|.|+|+++|.+|++++
T Consensus 376 ~~d~~l~g~~IP~Gt~V~~~~~~~~rdp~~~g~dP~~F~PeRwl~~~~~~~~~~~~~~pFg~G~R~C~G~~~A~~el~~~ 455 (502)
T PLN02966 376 IQDTKIAGYDIPAGTTVNVNAWAVSRDEKEWGPNPDEFRPERFLEKEVDFKGTDYEFIPFGSGRRMCPGMRLGAAMLEVP 455 (502)
T ss_pred CCCeeEccEEECCCCEEEEecccccCCcccccCChhhCChhhhcCCCCCcCCCcCCccCCCCCCCCCCCHHHHHHHHHHH
Confidence 3689999999999999999999999999999 999999999999654322224567999999999999999999999999
Q ss_pred HHHHHHhCeeecCCCc
Q 037860 80 LGSFINSLIGSLKTRT 95 (97)
Q Consensus 80 ~~~ll~~f~~~~~~~~ 95 (97)
++.|+++|++++.++.
T Consensus 456 la~ll~~f~i~~~~~~ 471 (502)
T PLN02966 456 YANLLLNFNFKLPNGM 471 (502)
T ss_pred HHHHHHhceeeCCCCC
Confidence 9999999999987654
No 10
>PLN02774 brassinosteroid-6-oxidase
Probab=99.97 E-value=3.1e-30 Score=180.27 Aligned_cols=92 Identities=18% Similarity=0.257 Sum_probs=83.2
Q ss_pred CCceEEcCEEEcCCCEEEeehhhhccCCCCCCCCCCCCCCCcCCCCCCCCCCccceeeccCCCCcCCcHHHHHHHHHHHH
Q 037860 1 LEDREIANFIALKCAKVLVNVWATVRYESIMDNACYFTPGRLLGSDIDFKGKNFELIPFGAGWQIYPGLPLAIKMLDLML 80 (97)
Q Consensus 1 ~~d~~l~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~P~R~~~~~~~~~~~~~~~~~fg~G~~~C~G~~~a~~~~~~~~ 80 (97)
++|++++|+.||||+.|+++.+++||||++|++|++|+||||++.+.. ....++|||+|+|.|+|+++|.+|+++++
T Consensus 351 ~~d~~l~g~~IpkGt~v~~~~~~~~rdp~~~~dP~~F~PeRfl~~~~~---~~~~~lpFG~G~r~C~G~~~A~~e~~~~l 427 (463)
T PLN02774 351 TQDMELNGYVIPKGWRIYVYTREINYDPFLYPDPMTFNPWRWLDKSLE---SHNYFFLFGGGTRLCPGKELGIVEISTFL 427 (463)
T ss_pred CCCeeECCEEECCCCEEEEehHHhcCCcccCCChhccCchhcCCCCcC---CCccccCcCCCCCcCCcHHHHHHHHHHHH
Confidence 469999999999999999999999999999999999999999964421 12358999999999999999999999999
Q ss_pred HHHHHhCeeecCCCc
Q 037860 81 GSFINSLIGSLKTRT 95 (97)
Q Consensus 81 ~~ll~~f~~~~~~~~ 95 (97)
+.|+++|++++.++.
T Consensus 428 a~Ll~~f~~~~~~~~ 442 (463)
T PLN02774 428 HYFVTRYRWEEVGGD 442 (463)
T ss_pred HHHHHhceEEECCCC
Confidence 999999999987664
No 11
>PLN02169 fatty acid (omega-1)-hydroxylase/midchain alkane hydroxylase
Probab=99.97 E-value=3.9e-30 Score=181.45 Aligned_cols=93 Identities=16% Similarity=0.245 Sum_probs=81.4
Q ss_pred ceEEcCEEEcCCCEEEeehhhhccCCCCC-CCCCCCCCCCcCCCCCCCC-CCccceeeccCCCCcCCcHHHHHHHHHHHH
Q 037860 3 DREIANFIALKCAKVLVNVWATVRYESIM-DNACYFTPGRLLGSDIDFK-GKNFELIPFGAGWQIYPGLPLAIKMLDLML 80 (97)
Q Consensus 3 d~~l~g~~ip~g~~v~~~~~~~~~d~~~~-~~p~~f~P~R~~~~~~~~~-~~~~~~~~fg~G~~~C~G~~~a~~~~~~~~ 80 (97)
|+.++|+.||||+.|.++.|++||||++| ++|++|+||||++++.... ...+.++|||+|+|.|+|+++|.+|+++++
T Consensus 382 ~~~~~G~~IpkGt~v~i~~~~ihrd~~~w~~dP~~F~PeRfl~~~~~~~~~~~~~~lPFG~GpR~CiG~~~A~~e~k~~l 461 (500)
T PLN02169 382 DVLPSGHKVDAESKIVICIYALGRMRSVWGEDALDFKPERWISDNGGLRHEPSYKFMAFNSGPRTCLGKHLALLQMKIVA 461 (500)
T ss_pred CCccCCEEECCCCEEEEcHHHhhCCccccCCChhhcCccccCCCCCCccCCCCccccCCCCCCCCCcCHHHHHHHHHHHH
Confidence 34459999999999999999999999999 8999999999996543221 235689999999999999999999999999
Q ss_pred HHHHHhCeeecCCCc
Q 037860 81 GSFINSLIGSLKTRT 95 (97)
Q Consensus 81 ~~ll~~f~~~~~~~~ 95 (97)
+.|+++|+++++++.
T Consensus 462 a~ll~~f~~~~~~~~ 476 (500)
T PLN02169 462 LEIIKNYDFKVIEGH 476 (500)
T ss_pred HHHHHHCEEEEcCCC
Confidence 999999999887543
No 12
>PLN03234 cytochrome P450 83B1; Provisional
Probab=99.96 E-value=6.2e-30 Score=179.81 Aligned_cols=93 Identities=30% Similarity=0.557 Sum_probs=84.0
Q ss_pred CceEEcCEEEcCCCEEEeehhhhccCCCCC-CCCCCCCCCCcCCCCCC--CCCCccceeeccCCCCcCCcHHHHHHHHHH
Q 037860 2 EDREIANFIALKCAKVLVNVWATVRYESIM-DNACYFTPGRLLGSDID--FKGKNFELIPFGAGWQIYPGLPLAIKMLDL 78 (97)
Q Consensus 2 ~d~~l~g~~ip~g~~v~~~~~~~~~d~~~~-~~p~~f~P~R~~~~~~~--~~~~~~~~~~fg~G~~~C~G~~~a~~~~~~ 78 (97)
+|++++|+.|||||.|.++.|++||||++| ++|++|+||||+++... .+.....++|||+|+|.|+|+++|.+|+++
T Consensus 374 ~d~~~~g~~IP~Gt~v~~~~~~~~rd~~~~~~~P~~F~PeR~l~~~~~~~~~~~~~~~~pFG~G~R~C~G~~~A~~e~~~ 453 (499)
T PLN03234 374 ADAKIGGYDIPAKTIIQVNAWAVSRDTAAWGDNPNEFIPERFMKEHKGVDFKGQDFELLPFGSGRRMCPAMHLGIAMVEI 453 (499)
T ss_pred CCeeECCEEECCCCEEEEehHhhhCCcccccCChhhcCchhhcCCCCCcCcCCCcceEeCCCCCCCCCCChHHHHHHHHH
Confidence 689999999999999999999999999999 79999999999965322 223456799999999999999999999999
Q ss_pred HHHHHHHhCeeecCCC
Q 037860 79 MLGSFINSLIGSLKTR 94 (97)
Q Consensus 79 ~~~~ll~~f~~~~~~~ 94 (97)
+++.|+++|+++++++
T Consensus 454 ~la~ll~~f~~~~~~~ 469 (499)
T PLN03234 454 PFANLLYKFDWSLPKG 469 (499)
T ss_pred HHHHHHHheeeeCCCC
Confidence 9999999999999875
No 13
>PLN00168 Cytochrome P450; Provisional
Probab=99.96 E-value=6.4e-30 Score=180.75 Aligned_cols=95 Identities=24% Similarity=0.373 Sum_probs=83.6
Q ss_pred CCceEEcCEEEcCCCEEEeehhhhccCCCCCCCCCCCCCCCcCCCCC----CCC-CCccceeeccCCCCcCCcHHHHHHH
Q 037860 1 LEDREIANFIALKCAKVLVNVWATVRYESIMDNACYFTPGRLLGSDI----DFK-GKNFELIPFGAGWQIYPGLPLAIKM 75 (97)
Q Consensus 1 ~~d~~l~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~P~R~~~~~~----~~~-~~~~~~~~fg~G~~~C~G~~~a~~~ 75 (97)
++|++++||.||||+.|.++.+++||||++|++|++|+||||++... ... ...+.++|||.|+|.|+|+++|.+|
T Consensus 392 ~~d~~~~g~~IpkGt~v~~~~~~~~~d~~~~~~p~~F~PeRf~~~~~~~~~~~~~~~~~~~~pFG~G~R~C~G~~lA~~e 471 (519)
T PLN00168 392 AEDMEVGGYLIPKGATVNFMVAEMGRDEREWERPMEFVPERFLAGGDGEGVDVTGSREIRMMPFGVGRRICAGLGIAMLH 471 (519)
T ss_pred CCCccCCCEEECCCCEEEEChHHHhcCccccCCccccCcccCCCCCCCccccccccCCcceeCCCCCCCCCCcHHHHHHH
Confidence 37999999999999999999999999999999999999999986421 111 1235799999999999999999999
Q ss_pred HHHHHHHHHHhCeeecCCCc
Q 037860 76 LDLMLGSFINSLIGSLKTRT 95 (97)
Q Consensus 76 ~~~~~~~ll~~f~~~~~~~~ 95 (97)
++++++.|+++|++++.+++
T Consensus 472 ~~~~la~ll~~f~~~~~~~~ 491 (519)
T PLN00168 472 LEYFVANMVREFEWKEVPGD 491 (519)
T ss_pred HHHHHHHHHHHccceeCCCC
Confidence 99999999999999987653
No 14
>KOG0157 consensus Cytochrome P450 CYP4/CYP19/CYP26 subfamilies [Secondary metabolites biosynthesis, transport and catabolism; Lipid transport and metabolism]
Probab=99.96 E-value=6.9e-30 Score=180.25 Aligned_cols=94 Identities=21% Similarity=0.335 Sum_probs=84.1
Q ss_pred CCceEEc-CEEEcCCCEEEeehhhhccCCCCCC-CCCCCCCCCcCCCCCCCCCCccceeeccCCCCcCCcHHHHHHHHHH
Q 037860 1 LEDREIA-NFIALKCAKVLVNVWATVRYESIMD-NACYFTPGRLLGSDIDFKGKNFELIPFGAGWQIYPGLPLAIKMLDL 78 (97)
Q Consensus 1 ~~d~~l~-g~~ip~g~~v~~~~~~~~~d~~~~~-~p~~f~P~R~~~~~~~~~~~~~~~~~fg~G~~~C~G~~~a~~~~~~ 78 (97)
.+|++++ ||.||||+.|.++.|++|||+.+|+ ||++|+|+||+++.......++.|+|||+|+|.|+|++||.+|||+
T Consensus 376 ~~d~~l~~g~~IPkG~~V~i~~~~~~r~~~~~~~dp~~F~PeRf~~~~~~~~~~~~~fipFsaGpR~CiG~~fA~lemKv 455 (497)
T KOG0157|consen 376 TKDVKLPGGYTIPKGTNVLISIYALHRDPRVWGEDPEEFDPERFLDGEEKAKRHPFAFIPFSAGPRNCIGQKFAMLEMKV 455 (497)
T ss_pred CCCeEcCCCcEeCCCCEEEEehHHhccCccccCCChhhcCccccCCCCCcCCCCCccccCCCCCcccchhHHHHHHHHHH
Confidence 3699995 8999999999999999999999996 9999999999965433233468999999999999999999999999
Q ss_pred HHHHHHHhCeeecCCC
Q 037860 79 MLGSFINSLIGSLKTR 94 (97)
Q Consensus 79 ~~~~ll~~f~~~~~~~ 94 (97)
+++.|+++|++++..+
T Consensus 456 ~l~~ll~~f~~~~~~~ 471 (497)
T KOG0157|consen 456 VLAHLLRRFRIEPVGG 471 (497)
T ss_pred HHHHHHHheEEEecCC
Confidence 9999999999987655
No 15
>PLN03141 3-epi-6-deoxocathasterone 23-monooxygenase; Provisional
Probab=99.96 E-value=1.1e-29 Score=177.03 Aligned_cols=91 Identities=27% Similarity=0.362 Sum_probs=83.4
Q ss_pred CCceEEcCEEEcCCCEEEeehhhhccCCCCCCCCCCCCCCCcCCCCCCCCCCccceeeccCCCCcCCcHHHHHHHHHHHH
Q 037860 1 LEDREIANFIALKCAKVLVNVWATVRYESIMDNACYFTPGRLLGSDIDFKGKNFELIPFGAGWQIYPGLPLAIKMLDLML 80 (97)
Q Consensus 1 ~~d~~l~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~P~R~~~~~~~~~~~~~~~~~fg~G~~~C~G~~~a~~~~~~~~ 80 (97)
.+|++++||.||||+.|+++.+++|+|+++|++|++|+||||++... ..+.++|||.|+|.|+|+++|.+|+++++
T Consensus 339 ~~d~~l~g~~IPkG~~V~~~~~~~~~d~~~~~dP~~F~PeRfl~~~~----~~~~~~pFG~G~R~C~G~~lA~~el~~~l 414 (452)
T PLN03141 339 MKDVEIKGYLIPKGWCVLAYFRSVHLDEENYDNPYQFNPWRWQEKDM----NNSSFTPFGGGQRLCPGLDLARLEASIFL 414 (452)
T ss_pred cCCeeECCEEECCCCEEEEehHhccCCchhcCCccccCcccccCCCC----CCCCCCCCCCCCCCCChHHHHHHHHHHHH
Confidence 36999999999999999999999999999999999999999997531 34579999999999999999999999999
Q ss_pred HHHHHhCeeecCCCc
Q 037860 81 GSFINSLIGSLKTRT 95 (97)
Q Consensus 81 ~~ll~~f~~~~~~~~ 95 (97)
+.|+++|+++++++.
T Consensus 415 a~ll~~f~~~~~~~~ 429 (452)
T PLN03141 415 HHLVTRFRWVAEEDT 429 (452)
T ss_pred HHHHhcCeeecCCCC
Confidence 999999999887653
No 16
>PLN00110 flavonoid 3',5'-hydroxylase (F3'5'H); Provisional
Probab=99.96 E-value=1.8e-29 Score=178.13 Aligned_cols=94 Identities=31% Similarity=0.570 Sum_probs=83.1
Q ss_pred CceEEcCEEEcCCCEEEeehhhhccCCCCCCCCCCCCCCCcCCCCCCC---CCCccceeeccCCCCcCCcHHHHHHHHHH
Q 037860 2 EDREIANFIALKCAKVLVNVWATVRYESIMDNACYFTPGRLLGSDIDF---KGKNFELIPFGAGWQIYPGLPLAIKMLDL 78 (97)
Q Consensus 2 ~d~~l~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~P~R~~~~~~~~---~~~~~~~~~fg~G~~~C~G~~~a~~~~~~ 78 (97)
+|++++||.||||+.|.++.+++|+|+++|++|++|+||||++..... ......++|||.|+|.|+|+++|..|+++
T Consensus 375 ~d~~~~g~~Ip~Gt~V~~~~~~~h~d~~~~~dP~~F~PeRfl~~~~~~~~~~~~~~~~~pFG~G~R~C~G~~~A~~e~~~ 454 (504)
T PLN00110 375 QACEVNGYYIPKNTRLSVNIWAIGRDPDVWENPEEFRPERFLSEKNAKIDPRGNDFELIPFGAGRRICAGTRMGIVLVEY 454 (504)
T ss_pred CCeeeCCEEECCCCEEEEeHHHhcCChhhcCCcccCCcccccCCCCcccccCCCeeeEeCCCCCCCCCCcHHHHHHHHHH
Confidence 689999999999999999999999999999999999999998643211 11235799999999999999999999999
Q ss_pred HHHHHHHhCeeecCCCc
Q 037860 79 MLGSFINSLIGSLKTRT 95 (97)
Q Consensus 79 ~~~~ll~~f~~~~~~~~ 95 (97)
+++.|+++|++++.++.
T Consensus 455 ~la~ll~~f~~~~~~~~ 471 (504)
T PLN00110 455 ILGTLVHSFDWKLPDGV 471 (504)
T ss_pred HHHHHHHhceeecCCCC
Confidence 99999999999987654
No 17
>PLN03195 fatty acid omega-hydroxylase; Provisional
Probab=99.96 E-value=1.2e-29 Score=179.14 Aligned_cols=93 Identities=19% Similarity=0.143 Sum_probs=80.5
Q ss_pred CceE-EcCEEEcCCCEEEeehhhhccCCCCC-CCCCCCCCCCcCCCCCCCCCCccceeeccCCCCcCCcHHHHHHHHHHH
Q 037860 2 EDRE-IANFIALKCAKVLVNVWATVRYESIM-DNACYFTPGRLLGSDIDFKGKNFELIPFGAGWQIYPGLPLAIKMLDLM 79 (97)
Q Consensus 2 ~d~~-l~g~~ip~g~~v~~~~~~~~~d~~~~-~~p~~f~P~R~~~~~~~~~~~~~~~~~fg~G~~~C~G~~~a~~~~~~~ 79 (97)
+|.. ++|+.||||+.|.++.|++||||++| ++|++|+||||++++.........++|||.|+|.|+|+++|++|++++
T Consensus 397 ~d~~~~~G~~IpkGt~V~~~~~~~h~dp~~~g~dP~~F~PeRwl~~~~~~~~~~~~~~pFG~G~R~CiG~~lA~~e~~~~ 476 (516)
T PLN03195 397 EDDVLPDGTKVKAGGMVTYVPYSMGRMEYNWGPDAASFKPERWIKDGVFQNASPFKFTAFQAGPRICLGKDSAYLQMKMA 476 (516)
T ss_pred cCcCcCCCcEECCCCEEEEehHhhccChhhhccChhhcCCcccCCCCCcCCCCCceEeccCCCCCcCcCHHHHHHHHHHH
Confidence 3444 48999999999999999999999999 999999999999643211223457999999999999999999999999
Q ss_pred HHHHHHhCeeecCCC
Q 037860 80 LGSFINSLIGSLKTR 94 (97)
Q Consensus 80 ~~~ll~~f~~~~~~~ 94 (97)
++.|+++|++++.++
T Consensus 477 la~ll~~f~~~~~~~ 491 (516)
T PLN03195 477 LALLCRFFKFQLVPG 491 (516)
T ss_pred HHHHHHhceeEecCC
Confidence 999999999998654
No 18
>PLN02290 cytokinin trans-hydroxylase
Probab=99.96 E-value=2.4e-29 Score=177.55 Aligned_cols=91 Identities=22% Similarity=0.339 Sum_probs=82.3
Q ss_pred CCceEEcCEEEcCCCEEEeehhhhccCCCCC-CCCCCCCCCCcCCCCCCCCCCccceeeccCCCCcCCcHHHHHHHHHHH
Q 037860 1 LEDREIANFIALKCAKVLVNVWATVRYESIM-DNACYFTPGRLLGSDIDFKGKNFELIPFGAGWQIYPGLPLAIKMLDLM 79 (97)
Q Consensus 1 ~~d~~l~g~~ip~g~~v~~~~~~~~~d~~~~-~~p~~f~P~R~~~~~~~~~~~~~~~~~fg~G~~~C~G~~~a~~~~~~~ 79 (97)
++|++++|+.|||||.|.++.|++||||++| ++|++|+||||++... .....++|||.|+|.|+|+++|.+|++++
T Consensus 399 ~~d~~i~g~~IP~Gt~V~~~~~~~~rdp~~~~~dP~~F~PeRfl~~~~---~~~~~~~pFG~G~R~C~G~~lA~~el~l~ 475 (516)
T PLN02290 399 FEDIKLGDLHIPKGLSIWIPVLAIHHSEELWGKDANEFNPDRFAGRPF---APGRHFIPFAAGPRNCIGQAFAMMEAKII 475 (516)
T ss_pred cCCeeECCEEECCCCEEEecHHHhcCChhhhCCChhhcCccccCCCCC---CCCCeEecCCCCCCCCccHHHHHHHHHHH
Confidence 3689999999999999999999999999999 8999999999995421 12346999999999999999999999999
Q ss_pred HHHHHHhCeeecCCC
Q 037860 80 LGSFINSLIGSLKTR 94 (97)
Q Consensus 80 ~~~ll~~f~~~~~~~ 94 (97)
++.|+++|++++.++
T Consensus 476 la~ll~~f~~~~~~~ 490 (516)
T PLN02290 476 LAMLISKFSFTISDN 490 (516)
T ss_pred HHHHHHhceEeeCCC
Confidence 999999999998765
No 19
>PLN02687 flavonoid 3'-monooxygenase
Probab=99.96 E-value=4e-29 Score=176.69 Aligned_cols=94 Identities=35% Similarity=0.581 Sum_probs=83.6
Q ss_pred CCceEEcCEEEcCCCEEEeehhhhccCCCCCCCCCCCCCCCcCCCCCC----CCCCccceeeccCCCCcCCcHHHHHHHH
Q 037860 1 LEDREIANFIALKCAKVLVNVWATVRYESIMDNACYFTPGRLLGSDID----FKGKNFELIPFGAGWQIYPGLPLAIKML 76 (97)
Q Consensus 1 ~~d~~l~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~P~R~~~~~~~----~~~~~~~~~~fg~G~~~C~G~~~a~~~~ 76 (97)
.+|++++|+.||+|+.|.++.|++|||+++|++|++|+||||++.... .......++|||.|+|.|+|+++|.+|+
T Consensus 382 ~~d~~~~g~~ip~Gt~v~~~~~~~h~d~~~~~dp~~F~PeRfl~~~~~~~~~~~~~~~~~~pFG~G~r~C~G~~~A~~e~ 461 (517)
T PLN02687 382 AEECEINGYHIPKGATLLVNVWAIARDPEQWPDPLEFRPDRFLPGGEHAGVDVKGSDFELIPFGAGRRICAGLSWGLRMV 461 (517)
T ss_pred CCCeeECCEEECCCCEEEEecHHhcCCcccCCCcccCCchhcCCCCCccccccCCCceeeCCCCCCCCCCCChHHHHHHH
Confidence 368999999999999999999999999999999999999999964321 1123457999999999999999999999
Q ss_pred HHHHHHHHHhCeeecCCC
Q 037860 77 DLMLGSFINSLIGSLKTR 94 (97)
Q Consensus 77 ~~~~~~ll~~f~~~~~~~ 94 (97)
+++++.|+++|++++.++
T Consensus 462 ~~~la~ll~~f~~~~~~~ 479 (517)
T PLN02687 462 TLLTATLVHAFDWELADG 479 (517)
T ss_pred HHHHHHHHHhcceecCCC
Confidence 999999999999998765
No 20
>PLN03018 homomethionine N-hydroxylase
Probab=99.96 E-value=6.8e-29 Score=176.42 Aligned_cols=94 Identities=18% Similarity=0.253 Sum_probs=83.3
Q ss_pred CCceEEcCEEEcCCCEEEeehhhhccCCCCCCCCCCCCCCCcCCCCCCC-----CCCccceeeccCCCCcCCcHHHHHHH
Q 037860 1 LEDREIANFIALKCAKVLVNVWATVRYESIMDNACYFTPGRLLGSDIDF-----KGKNFELIPFGAGWQIYPGLPLAIKM 75 (97)
Q Consensus 1 ~~d~~l~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~P~R~~~~~~~~-----~~~~~~~~~fg~G~~~C~G~~~a~~~ 75 (97)
.+|++++||.||||+.|.++.+++|+||++|++|++|+|+||++.+... ......++|||.|+|.|+|+++|.++
T Consensus 399 ~~d~~i~G~~IpkGt~V~~~~~~~~~dp~~~~~p~~F~PeRfl~~~~~~~~~~~~~~~~~~lpFG~G~R~C~G~~lA~~e 478 (534)
T PLN03018 399 RQDTTLGGYFIPKGSHIHVCRPGLGRNPKIWKDPLVYEPERHLQGDGITKEVTLVETEMRFVSFSTGRRGCVGVKVGTIM 478 (534)
T ss_pred CCCeeECCEEECCCCEEEEChHHhcCCcccCCCccccCCccCCCCCCccccccccCCCCCccCCCCCCCCCccHHHHHHH
Confidence 3699999999999999999999999999999999999999999643211 12345799999999999999999999
Q ss_pred HHHHHHHHHHhCeeecCCC
Q 037860 76 LDLMLGSFINSLIGSLKTR 94 (97)
Q Consensus 76 ~~~~~~~ll~~f~~~~~~~ 94 (97)
++++++.|+++|++++.++
T Consensus 479 ~~~~la~ll~~f~~~~~~~ 497 (534)
T PLN03018 479 MVMMLARFLQGFNWKLHQD 497 (534)
T ss_pred HHHHHHHHHHhceEEeCCC
Confidence 9999999999999997654
No 21
>PLN02655 ent-kaurene oxidase
Probab=99.96 E-value=4.5e-29 Score=174.54 Aligned_cols=93 Identities=16% Similarity=0.314 Sum_probs=83.5
Q ss_pred CCceEEcCEEEcCCCEEEeehhhhccCCCCCCCCCCCCCCCcCCCCCCCCCCccceeeccCCCCcCCcHHHHHHHHHHHH
Q 037860 1 LEDREIANFIALKCAKVLVNVWATVRYESIMDNACYFTPGRLLGSDIDFKGKNFELIPFGAGWQIYPGLPLAIKMLDLML 80 (97)
Q Consensus 1 ~~d~~l~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~P~R~~~~~~~~~~~~~~~~~fg~G~~~C~G~~~a~~~~~~~~ 80 (97)
.+|++++|+.||||+.|+++.+++|||+++|++|++|+|+||++..... .....++|||.|+|.|+|+++|..++++++
T Consensus 346 ~~d~~~~g~~ip~gt~v~~~~~~~~~d~~~~~~p~~F~PeR~~~~~~~~-~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l 424 (466)
T PLN02655 346 HEDTTLGGYDIPAGTQIAINIYGCNMDKKRWENPEEWDPERFLGEKYES-ADMYKTMAFGAGKRVCAGSLQAMLIACMAI 424 (466)
T ss_pred CCCcccCCEEECCCCEEEecHHHhcCCcccCCChhccCccccCCCCccc-CCcccccCCCCCCCCCCcHHHHHHHHHHHH
Confidence 3689999999999999999999999999999999999999999754221 123679999999999999999999999999
Q ss_pred HHHHHhCeeecCCC
Q 037860 81 GSFINSLIGSLKTR 94 (97)
Q Consensus 81 ~~ll~~f~~~~~~~ 94 (97)
+.|+++|++++.++
T Consensus 425 ~~ll~~f~~~~~~~ 438 (466)
T PLN02655 425 ARLVQEFEWRLREG 438 (466)
T ss_pred HHHHHHeEEEeCCC
Confidence 99999999998755
No 22
>PLN02738 carotene beta-ring hydroxylase
Probab=99.96 E-value=7.6e-29 Score=178.94 Aligned_cols=94 Identities=19% Similarity=0.253 Sum_probs=83.0
Q ss_pred CceEEcCEEEcCCCEEEeehhhhccCCCCCCCCCCCCCCCcCCCCC--CCCCCccceeeccCCCCcCCcHHHHHHHHHHH
Q 037860 2 EDREIANFIALKCAKVLVNVWATVRYESIMDNACYFTPGRLLGSDI--DFKGKNFELIPFGAGWQIYPGLPLAIKMLDLM 79 (97)
Q Consensus 2 ~d~~l~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~P~R~~~~~~--~~~~~~~~~~~fg~G~~~C~G~~~a~~~~~~~ 79 (97)
+|++++||.|||||.|.++.|.+||||++|++|++|+||||++... ........++|||.|+|.|+|++||..|++++
T Consensus 475 ~d~~i~gy~IPkGT~V~~s~~~ihrdp~ifpdP~~F~PERWl~~~~~~~~~~~~~~~vpFG~G~R~CiG~~lA~~El~l~ 554 (633)
T PLN02738 475 ENDMLGGYPIKRGEDIFISVWNLHRSPKHWDDAEKFNPERWPLDGPNPNETNQNFSYLPFGGGPRKCVGDMFASFENVVA 554 (633)
T ss_pred cCceECCEEECCCCEEEecHHHHhCCccccCCccccCcccCCCCCCCccccCCCCceeCCCCCCCCCcCHHHHHHHHHHH
Confidence 6888999999999999999999999999999999999999984321 11223457999999999999999999999999
Q ss_pred HHHHHHhCeeecCCCc
Q 037860 80 LGSFINSLIGSLKTRT 95 (97)
Q Consensus 80 ~~~ll~~f~~~~~~~~ 95 (97)
++.|+++|++++..+.
T Consensus 555 LA~Llr~F~~el~~~~ 570 (633)
T PLN02738 555 TAMLVRRFDFQLAPGA 570 (633)
T ss_pred HHHHHHhCeeEeCCCC
Confidence 9999999999987653
No 23
>PLN02196 abscisic acid 8'-hydroxylase
Probab=99.96 E-value=4.9e-29 Score=174.29 Aligned_cols=89 Identities=24% Similarity=0.297 Sum_probs=82.2
Q ss_pred CCceEEcCEEEcCCCEEEeehhhhccCCCCCCCCCCCCCCCcCCCCCCCCCCccceeeccCCCCcCCcHHHHHHHHHHHH
Q 037860 1 LEDREIANFIALKCAKVLVNVWATVRYESIMDNACYFTPGRLLGSDIDFKGKNFELIPFGAGWQIYPGLPLAIKMLDLML 80 (97)
Q Consensus 1 ~~d~~l~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~P~R~~~~~~~~~~~~~~~~~fg~G~~~C~G~~~a~~~~~~~~ 80 (97)
++|++++||.||||+.|.++.+++|||+++|++|++|+||||++.. .+..++|||.|+|.|+|+++|..++++++
T Consensus 351 ~~d~~i~g~~IpkGt~v~~~~~~~~rd~~~~~dP~~F~PeRfl~~~-----~~~~~lpFG~G~r~C~G~~~A~~e~~~~l 425 (463)
T PLN02196 351 VEDVEYEGYLIPKGWKVLPLFRNIHHSADIFSDPGKFDPSRFEVAP-----KPNTFMPFGNGTHSCPGNELAKLEISVLI 425 (463)
T ss_pred ccccccCCEEeCCCCEEEeeHHHhcCCchhcCCcCccChhhhcCCC-----CCCcccCcCCCCCCCchHHHHHHHHHHHH
Confidence 3689999999999999999999999999999999999999999632 34579999999999999999999999999
Q ss_pred HHHHHhCeeecCCC
Q 037860 81 GSFINSLIGSLKTR 94 (97)
Q Consensus 81 ~~ll~~f~~~~~~~ 94 (97)
+.|+++|+++++++
T Consensus 426 a~ll~~f~~~~~~~ 439 (463)
T PLN02196 426 HHLTTKYRWSIVGT 439 (463)
T ss_pred HHHHHhcEEEEcCC
Confidence 99999999998754
No 24
>PLN02302 ent-kaurenoic acid oxidase
Probab=99.96 E-value=1e-28 Score=173.01 Aligned_cols=90 Identities=23% Similarity=0.238 Sum_probs=82.5
Q ss_pred CCceEEcCEEEcCCCEEEeehhhhccCCCCCCCCCCCCCCCcCCCCCCCCCCccceeeccCCCCcCCcHHHHHHHHHHHH
Q 037860 1 LEDREIANFIALKCAKVLVNVWATVRYESIMDNACYFTPGRLLGSDIDFKGKNFELIPFGAGWQIYPGLPLAIKMLDLML 80 (97)
Q Consensus 1 ~~d~~l~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~P~R~~~~~~~~~~~~~~~~~fg~G~~~C~G~~~a~~~~~~~~ 80 (97)
.+|++++||.||||+.|.++.+++|||+++|++|++|+|+||++.. .....++|||.|+|.|+|+++|..|+++++
T Consensus 375 ~~d~~~~g~~Ip~Gt~v~~~~~~~~rd~~~~~dP~~F~PeR~~~~~----~~~~~~~pFG~G~r~C~G~~lA~~e~~~~l 450 (490)
T PLN02302 375 KTDVEVNGYTIPKGWKVLAWFRQVHMDPEVYPNPKEFDPSRWDNYT----PKAGTFLPFGLGSRLCPGNDLAKLEISIFL 450 (490)
T ss_pred cCCEeECCEEECCCCEEEeeHHHhcCCcccCCCccccChhhcCCCC----CCCCCccCCCCCCcCCCcHHHHHHHHHHHH
Confidence 3699999999999999999999999999999999999999998643 134579999999999999999999999999
Q ss_pred HHHHHhCeeecCCC
Q 037860 81 GSFINSLIGSLKTR 94 (97)
Q Consensus 81 ~~ll~~f~~~~~~~ 94 (97)
+.|+++|++++.++
T Consensus 451 a~ll~~f~~~~~~~ 464 (490)
T PLN02302 451 HHFLLGYRLERLNP 464 (490)
T ss_pred HHHHhcCeeEEcCC
Confidence 99999999998754
No 25
>PLN02987 Cytochrome P450, family 90, subfamily A
Probab=99.95 E-value=2.9e-28 Score=171.09 Aligned_cols=94 Identities=21% Similarity=0.260 Sum_probs=84.1
Q ss_pred CCceEEcCEEEcCCCEEEeehhhhccCCCCCCCCCCCCCCCcCCCCCCCCCCccceeeccCCCCcCCcHHHHHHHHHHHH
Q 037860 1 LEDREIANFIALKCAKVLVNVWATVRYESIMDNACYFTPGRLLGSDIDFKGKNFELIPFGAGWQIYPGLPLAIKMLDLML 80 (97)
Q Consensus 1 ~~d~~l~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~P~R~~~~~~~~~~~~~~~~~fg~G~~~C~G~~~a~~~~~~~~ 80 (97)
++|++++||.||||+.|.++.+++|+|+++|++|++|+|+||++.... ......++|||.|+|.|+|+++|..|+++++
T Consensus 354 ~~d~~~~G~~ip~Gt~v~~~~~~~~~d~~~~~~p~~F~PeRfl~~~~~-~~~~~~~l~FG~G~r~C~G~~lA~~e~~~~l 432 (472)
T PLN02987 354 MTDIEVKGYTIPKGWKVFASFRAVHLDHEYFKDARTFNPWRWQSNSGT-TVPSNVFTPFGGGPRLCPGYELARVALSVFL 432 (472)
T ss_pred CCCeeECCEEECCCCEEEEehHHhhCCcccCCCccccCcccCCCCCCC-CCCCcceECCCCCCcCCCcHHHHHHHHHHHH
Confidence 369999999999999999999999999999999999999999864322 1134579999999999999999999999999
Q ss_pred HHHHHhCeeecCCCc
Q 037860 81 GSFINSLIGSLKTRT 95 (97)
Q Consensus 81 ~~ll~~f~~~~~~~~ 95 (97)
+.|+++|+++++++.
T Consensus 433 a~ll~~f~~~~~~~~ 447 (472)
T PLN02987 433 HRLVTRFSWVPAEQD 447 (472)
T ss_pred HHHHhceEEEECCCC
Confidence 999999999987654
No 26
>PLN02426 cytochrome P450, family 94, subfamily C protein
Probab=99.95 E-value=1.5e-28 Score=173.55 Aligned_cols=92 Identities=20% Similarity=0.241 Sum_probs=80.3
Q ss_pred CceEE-cCEEEcCCCEEEeehhhhccCCCCC-CCCCCCCCCCcCCCCCCCCCCccceeeccCCCCcCCcHHHHHHHHHHH
Q 037860 2 EDREI-ANFIALKCAKVLVNVWATVRYESIM-DNACYFTPGRLLGSDIDFKGKNFELIPFGAGWQIYPGLPLAIKMLDLM 79 (97)
Q Consensus 2 ~d~~l-~g~~ip~g~~v~~~~~~~~~d~~~~-~~p~~f~P~R~~~~~~~~~~~~~~~~~fg~G~~~C~G~~~a~~~~~~~ 79 (97)
+|..+ +|+.|||||.|.++.|++|||+++| ++|++|+||||++++.......+.++|||.|+|.|+|+++|.+|++++
T Consensus 379 ~d~~~~~G~~Ip~Gt~V~~~~~~~~rd~~~~G~dp~~F~PeRwl~~~~~~~~~~~~~~pFg~G~R~CiG~~~A~~e~~~~ 458 (502)
T PLN02426 379 EDDVLPDGTFVAKGTRVTYHPYAMGRMERIWGPDCLEFKPERWLKNGVFVPENPFKYPVFQAGLRVCLGKEMALMEMKSV 458 (502)
T ss_pred cCCCcCCCcEECCCCEEEEchHHhcCCccccCcChhhcCccccCCCCCcCCCCCcccCCCCCCCCCCccHHHHHHHHHHH
Confidence 45555 8999999999999999999999999 999999999999743211223457899999999999999999999999
Q ss_pred HHHHHHhCeeecCC
Q 037860 80 LGSFINSLIGSLKT 93 (97)
Q Consensus 80 ~~~ll~~f~~~~~~ 93 (97)
++.|+++|++++.+
T Consensus 459 la~ll~~f~~~~~~ 472 (502)
T PLN02426 459 AVAVVRRFDIEVVG 472 (502)
T ss_pred HHHHHHHceEEEec
Confidence 99999999999853
No 27
>PLN03112 cytochrome P450 family protein; Provisional
Probab=99.95 E-value=3.5e-28 Score=171.58 Aligned_cols=94 Identities=24% Similarity=0.416 Sum_probs=82.3
Q ss_pred CCceEEcCEEEcCCCEEEeehhhhccCCCCCCCCCCCCCCCcCCCCC---CC-CCCccceeeccCCCCcCCcHHHHHHHH
Q 037860 1 LEDREIANFIALKCAKVLVNVWATVRYESIMDNACYFTPGRLLGSDI---DF-KGKNFELIPFGAGWQIYPGLPLAIKML 76 (97)
Q Consensus 1 ~~d~~l~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~P~R~~~~~~---~~-~~~~~~~~~fg~G~~~C~G~~~a~~~~ 76 (97)
.+|++++|+.||||+.|.++.+++||||++|++|++|+|+||..... .. ......++|||.|+|.|+|+++|.+|+
T Consensus 381 ~~d~~i~g~~IPkGt~v~~~~~~~h~d~~~~~dP~~F~PeRf~~~~~~~~~~~~~~~~~~~pFg~G~R~C~G~~~A~~e~ 460 (514)
T PLN03112 381 LRATTINGYYIPAKTRVFINTHGLGRNTKIWDDVEEFRPERHWPAEGSRVEISHGPDFKILPFSAGKRKCPGAPLGVTMV 460 (514)
T ss_pred CCCeeEcCEEeCCCCEEEEehHHhhCCcccCCChhhcCCcccCCCCCCccccccCCCcceeCCCCCCCCCCcHHHHHHHH
Confidence 36899999999999999999999999999999999999999864321 11 123457999999999999999999999
Q ss_pred HHHHHHHHHhCeeecCCC
Q 037860 77 DLMLGSFINSLIGSLKTR 94 (97)
Q Consensus 77 ~~~~~~ll~~f~~~~~~~ 94 (97)
+++++.|+++|++++.++
T Consensus 461 ~~~la~ll~~f~~~~~~~ 478 (514)
T PLN03112 461 LMALARLFHCFDWSPPDG 478 (514)
T ss_pred HHHHHHHHHheeeecCCC
Confidence 999999999999998754
No 28
>PLN02936 epsilon-ring hydroxylase
Probab=99.95 E-value=7.9e-28 Score=169.23 Aligned_cols=94 Identities=19% Similarity=0.210 Sum_probs=82.2
Q ss_pred CceEEcCEEEcCCCEEEeehhhhccCCCCCCCCCCCCCCCcCCCCCC--CCCCccceeeccCCCCcCCcHHHHHHHHHHH
Q 037860 2 EDREIANFIALKCAKVLVNVWATVRYESIMDNACYFTPGRLLGSDID--FKGKNFELIPFGAGWQIYPGLPLAIKMLDLM 79 (97)
Q Consensus 2 ~d~~l~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~P~R~~~~~~~--~~~~~~~~~~fg~G~~~C~G~~~a~~~~~~~ 79 (97)
+|+.++|+.||||+.|.++.+++||||++|++|++|+|+||+..+.. .......++|||.|+|.|+|+++|.++++++
T Consensus 363 ~~~~~~g~~Ip~Gt~v~~~~~~~~rd~~~~~dP~~F~PeRwl~~~~~~~~~~~~~~~~pFg~G~R~C~G~~la~~~~~~~ 442 (489)
T PLN02936 363 EDVLPGGYKVNAGQDIMISVYNIHRSPEVWERAEEFVPERFDLDGPVPNETNTDFRYIPFSGGPRKCVGDQFALLEAIVA 442 (489)
T ss_pred CccccCCeEECCCCEEEecHHhccCChhhCCCccccCccccCCCCCCccccCCCcceeCCCCCCCCCCCHHHHHHHHHHH
Confidence 46677999999999999999999999999999999999999864321 1112357999999999999999999999999
Q ss_pred HHHHHHhCeeecCCCc
Q 037860 80 LGSFINSLIGSLKTRT 95 (97)
Q Consensus 80 ~~~ll~~f~~~~~~~~ 95 (97)
++.|+++|+++++++.
T Consensus 443 la~ll~~f~~~~~~~~ 458 (489)
T PLN02936 443 LAVLLQRLDLELVPDQ 458 (489)
T ss_pred HHHHHHhCeEEecCCC
Confidence 9999999999987654
No 29
>KOG0159 consensus Cytochrome P450 CYP11/CYP12/CYP24/CYP27 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.95 E-value=6.2e-28 Score=168.35 Aligned_cols=94 Identities=18% Similarity=0.233 Sum_probs=85.7
Q ss_pred CceEEcCEEEcCCCEEEeehhhhccCCCCCCCCCCCCCCCcCCCCCCCCCCccceeeccCCCCcCCcHHHHHHHHHHHHH
Q 037860 2 EDREIANFIALKCAKVLVNVWATVRYESIMDNACYFTPGRLLGSDIDFKGKNFELIPFGAGWQIYPGLPLAIKMLDLMLG 81 (97)
Q Consensus 2 ~d~~l~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~P~R~~~~~~~~~~~~~~~~~fg~G~~~C~G~~~a~~~~~~~~~ 81 (97)
+|+.++||.|||||.|.++.+.+.+||+.|++|++|+|+||++... ....++.++|||.|+|.|+|+++|.+||.+.++
T Consensus 402 ~D~vL~gY~vPagT~V~l~~~~~~r~~~~F~~p~~F~PeRWL~~~~-~~~~pF~~LPFGfG~R~C~GRRiAElEl~llLa 480 (519)
T KOG0159|consen 402 KDLVLSGYHVPAGTLVVLFLYVLGRNPAYFPDPEEFLPERWLKPST-KTIHPFASLPFGFGPRMCLGRRIAELELHLLLA 480 (519)
T ss_pred hhceeccceecCCCeEEEeehhhccChhhCCCccccChhhhccccc-CCCCCceecCCCCCccccchHHHHHHHHHHHHH
Confidence 6999999999999999999999999999999999999999998653 233578999999999999999999999999999
Q ss_pred HHHHhCeeecCCCcc
Q 037860 82 SFINSLIGSLKTRTW 96 (97)
Q Consensus 82 ~ll~~f~~~~~~~~~ 96 (97)
.|+++|+++...+++
T Consensus 481 rllr~f~V~~~~~~p 495 (519)
T KOG0159|consen 481 RLLRNFKVEFLHEEP 495 (519)
T ss_pred HHHHhcceeecCCCC
Confidence 999999998776544
No 30
>COG2124 CypX Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.93 E-value=6e-26 Score=157.19 Aligned_cols=84 Identities=24% Similarity=0.286 Sum_probs=79.2
Q ss_pred CCceEEcCEEEcCCCEEEeehhhhccCCCCCCCCCCCCCCCcCCCCCCCCCCccceeeccCCCCcCCcHHHHHHHHHHHH
Q 037860 1 LEDREIANFIALKCAKVLVNVWATVRYESIMDNACYFTPGRLLGSDIDFKGKNFELIPFGAGWQIYPGLPLAIKMLDLML 80 (97)
Q Consensus 1 ~~d~~l~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~P~R~~~~~~~~~~~~~~~~~fg~G~~~C~G~~~a~~~~~~~~ 80 (97)
++|++++|+.||||+.|+++.++.||||++|++|++|+|+||. ..++|||+|+|.|+|.+||++|+++++
T Consensus 304 ~~d~~igg~~Ip~G~~V~~~~~~anrDp~~f~~P~~F~p~R~~----------~~~l~FG~G~H~ClG~~lA~~E~~~~l 373 (411)
T COG2124 304 TEDVELGGYRIPAGTVVLLSIGAANRDPEVFPDPDEFDPERFN----------NAHLPFGGGPHRCLGAALARLELKVAL 373 (411)
T ss_pred cCCEeeCCEEeCCCCEEEecHhhhcCChhhCCChhhcCCCCCC----------CCCcCCCCCCccccCHHHHHHHHHHHH
Confidence 4799999999999999999999999999999999999999997 369999999999999999999999999
Q ss_pred HHHHHhCeeecCCC
Q 037860 81 GSFINSLIGSLKTR 94 (97)
Q Consensus 81 ~~ll~~f~~~~~~~ 94 (97)
+.|+++|++....+
T Consensus 374 ~~ll~r~~~~~~~~ 387 (411)
T COG2124 374 AELLRRFPLLLLAE 387 (411)
T ss_pred HHHHHhCchhhcCC
Confidence 99999999877654
No 31
>KOG0684 consensus Cytochrome P450 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.92 E-value=1.5e-25 Score=154.28 Aligned_cols=93 Identities=22% Similarity=0.361 Sum_probs=81.9
Q ss_pred CceEEcC----EEEcCCCEEEeehhhhccCCCCCCCCCCCCCCCcCCCCCCC--CCC--ccceeeccCCCCcCCcHHHHH
Q 037860 2 EDREIAN----FIALKCAKVLVNVWATVRYESIMDNACYFTPGRLLGSDIDF--KGK--NFELIPFGAGWQIYPGLPLAI 73 (97)
Q Consensus 2 ~d~~l~g----~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~P~R~~~~~~~~--~~~--~~~~~~fg~G~~~C~G~~~a~ 73 (97)
+|.++.+ |.||+|..|.++...+|+||++|++|+.|+|+||++++... .+. .+.++|||+|++.|||+.||+
T Consensus 359 ~D~tv~~~~~~Y~Ip~G~~valsP~~~hr~peif~dp~~Fk~dRf~~~~~~~~k~g~kl~yy~mpfGaGr~~CpGr~FA~ 438 (486)
T KOG0684|consen 359 EDLTVPGSDGEYVIPKGDIVALSPFLLHRDPEIFPDPEDFKPDRFLKDNGESKKNGEKLDYYYMPFGAGRHRCPGRSFAY 438 (486)
T ss_pred cceeeccCCcceecCCCCEEEeccccccCCccccCChhhCChhhccCCCcccccccccccccccccCCCcCCCCchHHHH
Confidence 4667765 99999999999999999999999999999999999655432 122 345699999999999999999
Q ss_pred HHHHHHHHHHHHhCeeecCCC
Q 037860 74 KMLDLMLGSFINSLIGSLKTR 94 (97)
Q Consensus 74 ~~~~~~~~~ll~~f~~~~~~~ 94 (97)
+|++.++..+|+.|++++.++
T Consensus 439 ~eIk~~~~l~L~~fdleLid~ 459 (486)
T KOG0684|consen 439 LEIKQFISLLLRHFDLELIDG 459 (486)
T ss_pred HHHHHHHHHHHHHcceeecCC
Confidence 999999999999999999986
No 32
>PLN02648 allene oxide synthase
Probab=99.92 E-value=1e-24 Score=153.56 Aligned_cols=92 Identities=17% Similarity=0.170 Sum_probs=77.7
Q ss_pred CceEEc----CEEEcCCCEEEeehhhhccCCCCCCCCCCCCCCCcCCCCCCCCCCccceee---------ccCCCCcCCc
Q 037860 2 EDREIA----NFIALKCAKVLVNVWATVRYESIMDNACYFTPGRLLGSDIDFKGKNFELIP---------FGAGWQIYPG 68 (97)
Q Consensus 2 ~d~~l~----g~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~P~R~~~~~~~~~~~~~~~~~---------fg~G~~~C~G 68 (97)
+|++++ ||.||||+.|+++.+.+|||+++|++|++|+|+||++.... ....+++ ||+|+|.|+|
T Consensus 359 ~d~~l~~~~~g~~IpkG~~V~~~~~~~hrdp~~~~dP~~F~PeRf~~~~~~---~~~~~~~f~~g~~~~~~G~G~R~C~G 435 (480)
T PLN02648 359 EDFVIESHDAAFEIKKGEMLFGYQPLVTRDPKVFDRPEEFVPDRFMGEEGE---KLLKYVFWSNGRETESPTVGNKQCAG 435 (480)
T ss_pred CCEEEecCCceEEECCCCEEEEChHHHhCCcccCCCcceeCCCCCCCCCcc---ccccccccCCCcccCCCCCCCccCcc
Confidence 688886 79999999999999999999999999999999999864221 1112333 3677899999
Q ss_pred HHHHHHHHHHHHHHHHHhCe-eecCCCcc
Q 037860 69 LPLAIKMLDLMLGSFINSLI-GSLKTRTW 96 (97)
Q Consensus 69 ~~~a~~~~~~~~~~ll~~f~-~~~~~~~~ 96 (97)
+++|..|++++++.|+++|+ +++.+++.
T Consensus 436 ~~~A~~e~~~~la~Ll~~f~~~~l~~~~~ 464 (480)
T PLN02648 436 KDFVVLVARLFVAELFLRYDSFEIEVDTS 464 (480)
T ss_pred HHHHHHHHHHHHHHHHHHhCEEeecCCcc
Confidence 99999999999999999998 99877653
No 33
>PF12508 DUF3714: Protein of unknown function (DUF3714) ; InterPro: IPR022187 Proteins in this entry are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage.
Probab=81.73 E-value=1.6 Score=28.16 Aligned_cols=19 Identities=26% Similarity=0.272 Sum_probs=16.1
Q ss_pred CCceEEcCEEEcCCCEEEe
Q 037860 1 LEDREIANFIALKCAKVLV 19 (97)
Q Consensus 1 ~~d~~l~g~~ip~g~~v~~ 19 (97)
.+|+.++|..|||||.+.-
T Consensus 76 le~i~i~g~~IPkgt~l~G 94 (200)
T PF12508_consen 76 LEDIQIGGILIPKGTYLYG 94 (200)
T ss_pred cCceEECCEEeCCCCEEEE
Confidence 3689999999999987754
No 34
>PF08492 SRP72: SRP72 RNA-binding domain; InterPro: IPR013699 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the RNA binding domain of the SRP72 subunit. This domain is responsible for the binding of SRP72 to the 7S SRP RNA []. ; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle
Probab=75.25 E-value=1.2 Score=23.09 Aligned_cols=7 Identities=43% Similarity=0.629 Sum_probs=5.6
Q ss_pred CCCCcCC
Q 037860 38 TPGRLLG 44 (97)
Q Consensus 38 ~P~R~~~ 44 (97)
||||||.
T Consensus 44 DPERWLP 50 (59)
T PF08492_consen 44 DPERWLP 50 (59)
T ss_pred CccccCc
Confidence 7888884
No 35
>PF11138 DUF2911: Protein of unknown function (DUF2911); InterPro: IPR021314 This bacterial family of proteins has no known function.
Probab=73.88 E-value=4.2 Score=24.96 Aligned_cols=38 Identities=11% Similarity=0.011 Sum_probs=27.0
Q ss_pred CceEEcCEEEcCCCEEEeehh-------hhccCCCCCCCCCCCCCC
Q 037860 2 EDREIANFIALKCAKVLVNVW-------ATVRYESIMDNACYFTPG 40 (97)
Q Consensus 2 ~d~~l~g~~ip~g~~v~~~~~-------~~~~d~~~~~~p~~f~P~ 40 (97)
+|+.++|..||+|+.-++..- .++++...|.. ..++|+
T Consensus 54 ~dv~igGk~l~AG~Ysl~tiP~~~~WtvI~n~~~~~wG~-~~Y~~~ 98 (145)
T PF11138_consen 54 KDVTIGGKKLKAGTYSLFTIPGEDEWTVIFNKDTDQWGA-YNYDPS 98 (145)
T ss_pred CCeEECCEEcCCeeEEEEEecCCCeEEEEEECCCCccCc-cccCch
Confidence 699999999999998877543 34556666654 455554
No 36
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=64.19 E-value=2.4 Score=26.83 Aligned_cols=37 Identities=14% Similarity=0.252 Sum_probs=26.6
Q ss_pred CCCCCCCCCcCCCCCCCCCCccceeeccCCCCcCCcH
Q 037860 33 NACYFTPGRLLGSDIDFKGKNFELIPFGAGWQIYPGL 69 (97)
Q Consensus 33 ~p~~f~P~R~~~~~~~~~~~~~~~~~fg~G~~~C~G~ 69 (97)
.-.+|+|++|-.--.....++...+-|..|.-.|.|.
T Consensus 33 ~~aeYnP~qFpGlv~Rl~ePk~a~LIF~SGK~VcTGa 69 (185)
T COG2101 33 PGAEYNPEQFPGLVYRLEEPKTAALIFRSGKVVCTGA 69 (185)
T ss_pred CCCccCHhHCCeeEEEecCCcceEEEEecCcEEEecc
Confidence 3458999999543223344566889999999999984
No 37
>KOG3302 consensus TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=62.23 E-value=2.4 Score=27.26 Aligned_cols=54 Identities=13% Similarity=0.185 Sum_probs=31.3
Q ss_pred CCCCCCCCCcCCCCCCCCCCccceeeccCCCCcCCc---HHHHHHHHHHHHHHHHHhC
Q 037860 33 NACYFTPGRLLGSDIDFKGKNFELIPFGAGWQIYPG---LPLAIKMLDLMLGSFINSL 87 (97)
Q Consensus 33 ~p~~f~P~R~~~~~~~~~~~~~~~~~fg~G~~~C~G---~~~a~~~~~~~~~~ll~~f 87 (97)
.-.+|+|.||..--.....+.....-|+.|+=.|.| +.-|..-.+. ++.+||+.
T Consensus 48 ~N~ey~Pk~~~aVimrir~P~~ta~I~ssGKi~ctgA~se~~ar~aark-~aRilqkL 104 (200)
T KOG3302|consen 48 RNAEYNPKRFAAVIMRIRSPRTTALIFSSGKIVCTGAKSEDSARLAARK-YARILQKL 104 (200)
T ss_pred cccccCcccccEEEEEEcCCceEEEEecCCcEEEeccCCHHHHHHHHHH-HHHHHHHc
Confidence 456899999853222223344567788999999996 2333333332 34455543
No 38
>PF14550 Peptidase_U35_2: Putative phage protease XkdF
Probab=61.48 E-value=6.2 Score=23.49 Aligned_cols=19 Identities=32% Similarity=0.099 Sum_probs=16.0
Q ss_pred CceEEcCEEEcCCCEEEee
Q 037860 2 EDREIANFIALKCAKVLVN 20 (97)
Q Consensus 2 ~d~~l~g~~ip~g~~v~~~ 20 (97)
+|..++|-.||+|++++..
T Consensus 75 ~d~~~~g~~i~~GtWv~~~ 93 (122)
T PF14550_consen 75 EDMEIGGETIPKGTWVVGV 93 (122)
T ss_pred CCcccCCeeecceEEEEEE
Confidence 4788899999999999654
No 39
>TIGR03779 Bac_Flav_CT_M Bacteroides conjugative transposon TraM protein. Members of this protein family are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage.
Probab=59.22 E-value=10 Score=27.26 Aligned_cols=19 Identities=16% Similarity=0.155 Sum_probs=16.0
Q ss_pred CCceEEcCEEEcCCCEEEe
Q 037860 1 LEDREIANFIALKCAKVLV 19 (97)
Q Consensus 1 ~~d~~l~g~~ip~g~~v~~ 19 (97)
.+|+.++|..|||||.+.-
T Consensus 279 le~~~v~~~~ipkgt~l~g 297 (410)
T TIGR03779 279 LEPIQAGDLVIPKGTVLYG 297 (410)
T ss_pred cCceeeCCEEecCCCEEEE
Confidence 3689999999999987754
No 40
>PRK14759 potassium-transporting ATPase subunit F; Provisional
Probab=56.70 E-value=4.7 Score=17.78 Aligned_cols=6 Identities=33% Similarity=0.849 Sum_probs=3.9
Q ss_pred CCCCCc
Q 037860 37 FTPGRL 42 (97)
Q Consensus 37 f~P~R~ 42 (97)
++||||
T Consensus 24 lrPErF 29 (29)
T PRK14759 24 LRPERF 29 (29)
T ss_pred hCcccC
Confidence 467776
No 41
>PF09201 SRX: SRX; InterPro: IPR015284 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. This entry represents a homologue of the alpha subunit of the SR receptor. Members of this entry consist of a central six-stranded anti-parallel beta-sheet sandwiched by helix alpha1 on one side and helices alpha2-alpha4 on the other. They interact with the small GTPase SR-beta, forming a complex that matches a class of small G protein-effector complexes, including Rap-Raf, Ras-PI3K(gamma), Ras-RalGDS, and Arl2-PDE(delta) []. ; PDB: 1NRJ_A.
Probab=55.86 E-value=14 Score=22.57 Aligned_cols=24 Identities=13% Similarity=0.153 Sum_probs=16.6
Q ss_pred CcCCcHHHHHHHHHHHHHHHHHhC
Q 037860 64 QIYPGLPLAIKMLDLMLGSFINSL 87 (97)
Q Consensus 64 ~~C~G~~~a~~~~~~~~~~ll~~f 87 (97)
-.|.|+.||..++-.++++|+..-
T Consensus 18 yN~~gKKFsE~QiN~FIs~lItsP 41 (148)
T PF09201_consen 18 YNCLGKKFSETQINAFISHLITSP 41 (148)
T ss_dssp EETTS----HHHHHHHHHHHHHS-
T ss_pred ecccchHHHHHHHHHHHHHHhcCC
Confidence 359999999999999999998754
No 42
>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA. New members of the TBP family, called TBP-like proteins (TBLP, TLF, TLP) or TBP-related factors (TRF1, TRF2,TRP), are similar to the core domain of TBPs, with identical or chemically similar amino acids at many
Probab=55.70 E-value=11 Score=23.64 Aligned_cols=55 Identities=15% Similarity=0.154 Sum_probs=33.5
Q ss_pred CCCCCCCcCCCCCCCCCCccceeeccCCCCcCCc---HHHHHHHHHHHHHHHHHhCeee
Q 037860 35 CYFTPGRLLGSDIDFKGKNFELIPFGAGWQIYPG---LPLAIKMLDLMLGSFINSLIGS 90 (97)
Q Consensus 35 ~~f~P~R~~~~~~~~~~~~~~~~~fg~G~~~C~G---~~~a~~~~~~~~~~ll~~f~~~ 90 (97)
.+|+|+||-.--.....+....+-|+.|+=.|.| ..-|..-++. +..+|++..+.
T Consensus 29 ~~YePe~fpgli~R~~~P~~t~lIf~sGKivitGaks~~~~~~a~~~-~~~~L~~~g~~ 86 (174)
T cd00652 29 AEYNPKRFPGVIMRLREPKTTALIFSSGKMVITGAKSEEDAKLAARK-YARILQKLGFP 86 (174)
T ss_pred cEECCCccceEEEEcCCCcEEEEEECCCEEEEEecCCHHHHHHHHHH-HHHHHHHcCCC
Confidence 5899999854322333355678889999999988 2233333433 34445555543
No 43
>PF12444 Sox_N: Sox developmental protein N terminal ; InterPro: IPR022151 This domain family is found in eukaryotes, and is typically between 69 and 88 amino acids in length. The family is found in association with PF00505 from PFAM. There are two conserved sequence motifs: YDW and PVR. This family contains Sox8, Sox9 and Sox10 proteins which have structural similarity. Sox proteins are involved in developmental processes.
Probab=55.29 E-value=9 Score=21.31 Aligned_cols=20 Identities=5% Similarity=-0.034 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHhCeeecCC
Q 037860 74 KMLDLMLGSFINSLIGSLKT 93 (97)
Q Consensus 74 ~~~~~~~~~ll~~f~~~~~~ 93 (97)
..|+-+++.+|+-|+|.|+.
T Consensus 60 ~~IrdAVsqVLkGYDWtLVP 79 (84)
T PF12444_consen 60 VCIRDAVSQVLKGYDWTLVP 79 (84)
T ss_pred HHHHHHHHHHhccCCceeee
Confidence 35677899999999999863
No 44
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=54.56 E-value=3.3 Score=26.08 Aligned_cols=55 Identities=9% Similarity=0.109 Sum_probs=33.4
Q ss_pred CCCCCCCcCCCCCCCCCCccceeeccCCCCcCCcH---HHHHHHHHHHHHHHHHhCeee
Q 037860 35 CYFTPGRLLGSDIDFKGKNFELIPFGAGWQIYPGL---PLAIKMLDLMLGSFINSLIGS 90 (97)
Q Consensus 35 ~~f~P~R~~~~~~~~~~~~~~~~~fg~G~~~C~G~---~~a~~~~~~~~~~ll~~f~~~ 90 (97)
.+|+|+||-.--.....+....+-|+.|+=.|.|- .-|..-++. ++.+|++..+.
T Consensus 29 ~eY~P~~fpgli~Rl~~Pk~t~lIF~SGKiv~tGaks~~~a~~a~~~-~~~~L~~~g~~ 86 (174)
T cd04518 29 AEYNPDQFPGLVYRLEDPKIAALIFRSGKMVCTGAKSVEDLHRAVKE-IIKKLKDYGIK 86 (174)
T ss_pred cEECCCcCcEEEEEccCCcEEEEEECCCeEEEEccCCHHHHHHHHHH-HHHHHHhcCCC
Confidence 58999998543233334556788999999999874 233333333 34445555443
No 45
>PLN00062 TATA-box-binding protein; Provisional
Probab=54.33 E-value=9.5 Score=24.19 Aligned_cols=54 Identities=13% Similarity=0.129 Sum_probs=32.7
Q ss_pred CCCCCCCcCCCCCCCCCCccceeeccCCCCcCCcH---HHHHHHHHHHHHHHHHhCee
Q 037860 35 CYFTPGRLLGSDIDFKGKNFELIPFGAGWQIYPGL---PLAIKMLDLMLGSFINSLIG 89 (97)
Q Consensus 35 ~~f~P~R~~~~~~~~~~~~~~~~~fg~G~~~C~G~---~~a~~~~~~~~~~ll~~f~~ 89 (97)
.+|+|++|-.--.....++...+-|+.|+=.|.|. .-|..-++ -++.+|++..+
T Consensus 29 ~eYePe~fpgli~Rl~~Pk~t~lIF~SGKiviTGaks~e~a~~a~~-~~~~~L~~lg~ 85 (179)
T PLN00062 29 AEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEHDSKLAAR-KYARIIQKLGF 85 (179)
T ss_pred CEECCccCcEEEEEeCCCcEEEEEECCCeEEEEecCCHHHHHHHHH-HHHHHHHHcCC
Confidence 68999998532222333556788999999999883 22222233 23455655544
No 46
>PF09604 Potass_KdpF: F subunit of K+-transporting ATPase (Potass_KdpF); InterPro: IPR011726 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the F subunit (KdpF) of a P-type K+-translocating ATPase (Kdp). KdpF is a very small integral membrane peptide. The kdpABC operon of Escherichia coli codes for the high affinity K+-translocating Kdp complex []. KdpF is found upstream of the KdpA subunit (IPR004623 from INTERPRO). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation. More information about this protein can be found at Protein of the Month: ATP Synthases [].
Probab=51.79 E-value=6.3 Score=16.74 Aligned_cols=6 Identities=33% Similarity=0.849 Sum_probs=3.5
Q ss_pred CCCCCc
Q 037860 37 FTPGRL 42 (97)
Q Consensus 37 f~P~R~ 42 (97)
++||||
T Consensus 20 l~PErF 25 (25)
T PF09604_consen 20 LRPERF 25 (25)
T ss_pred hCcccC
Confidence 356665
No 47
>PRK00394 transcription factor; Reviewed
Probab=50.17 E-value=8.7 Score=24.32 Aligned_cols=34 Identities=15% Similarity=0.330 Sum_probs=24.8
Q ss_pred CCCCCCCcCCCCCCCCCCccceeeccCCCCcCCc
Q 037860 35 CYFTPGRLLGSDIDFKGKNFELIPFGAGWQIYPG 68 (97)
Q Consensus 35 ~~f~P~R~~~~~~~~~~~~~~~~~fg~G~~~C~G 68 (97)
.+|+|+||-.--.....+....+-|+.|.=.|.|
T Consensus 28 ~eYePe~fpgli~Rl~~Pk~t~lIf~sGKiv~tG 61 (179)
T PRK00394 28 AEYNPEQFPGLVYRLEDPKIAALIFRSGKVVCTG 61 (179)
T ss_pred ceeCcccCceEEEEecCCceEEEEEcCCcEEEEc
Confidence 5899999854333333455678899999999988
No 48
>PF11227 DUF3025: Protein of unknown function (DUF3025); InterPro: IPR021390 Some members in this bacterial family of proteins are annotated as transmembrane proteins however this cannot be confirmed. Currently this family of proteins has no known function.
Probab=46.47 E-value=14 Score=24.19 Aligned_cols=20 Identities=30% Similarity=0.670 Sum_probs=16.9
Q ss_pred hhhccCCCCCCCCCCCCCCC
Q 037860 22 WATVRYESIMDNACYFTPGR 41 (97)
Q Consensus 22 ~~~~~d~~~~~~p~~f~P~R 41 (97)
+.-+.|+..|.|...|+|.|
T Consensus 192 ~~~n~~~~FY~d~~~FRp~R 211 (212)
T PF11227_consen 192 WPDNEDPAFYDDTDVFRPGR 211 (212)
T ss_pred CCCCCCcccccCccccCCCC
Confidence 34488899999999999987
No 49
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ]. TBP associates with a host of factors, including the general transcription factors TFIIA, -B, -D, -E, and -H, to form huge multi-subunit pre-initiation complexes on the core promoter. Through its association with different transcription factors, TBP can initiate transcription from different RNA polymerases. There are several related TBPs, including TBP-like (TBPL) proteins []. The C-terminal core of TBP (~180 residues) is highly conserved and contains two 77-amino acid repeats that produce a saddle-shaped structure that straddles the DNA; this region binds to the TATA box and interacts with transcription factors and regulatory proteins []. By contrast, the N-terminal region varies in both length and sequence.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0006367 transcription initiation from RNA polymerase II promoter; PDB: 1D3U_A 1PCZ_B 1AIS_A 1NGM_A 1TBP_A 1TBA_B 1YTB_A 1RM1_A 1YTF_A 1NH2_A ....
Probab=46.01 E-value=8.1 Score=21.16 Aligned_cols=36 Identities=17% Similarity=0.329 Sum_probs=23.3
Q ss_pred CCCCCCCCcCCCCCCCCCCccceeeccCCCCcCCcH
Q 037860 34 ACYFTPGRLLGSDIDFKGKNFELIPFGAGWQIYPGL 69 (97)
Q Consensus 34 p~~f~P~R~~~~~~~~~~~~~~~~~fg~G~~~C~G~ 69 (97)
-.+|+|++|-.--.....+....+-|..|.=.|.|.
T Consensus 30 ~~~YePe~fpgl~~r~~~p~~t~~IF~sGki~itGa 65 (86)
T PF00352_consen 30 NVEYEPERFPGLIYRLRNPKATVLIFSSGKIVITGA 65 (86)
T ss_dssp TEEEETTTESSEEEEETTTTEEEEEETTSEEEEEEE
T ss_pred CcEEeeccCCeEEEeecCCcEEEEEEcCCEEEEEec
Confidence 347888887432122223456778899999888873
No 50
>PF01629 DUF22: Domain of unknown function DUF22; InterPro: IPR002572 This region is found in 1 to 3 copies in archaeal proteins whose function is unknown. It only appears in multiple copies in proteins from Archaeoglobus fulgidus.
Probab=38.01 E-value=33 Score=20.12 Aligned_cols=38 Identities=13% Similarity=0.063 Sum_probs=26.6
Q ss_pred EEcCEEEcCCCEEEeehhhhccCCCCCCCCCCCCCCCc
Q 037860 5 EIANFIALKCAKVLVNVWATVRYESIMDNACYFTPGRL 42 (97)
Q Consensus 5 ~l~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~P~R~ 42 (97)
.+.-..||++|.+..+.++.|....+-.=-++..|-++
T Consensus 58 kIk~I~iP~~tIv~p~~~~rha~G~vi~v~e~~~p~~v 95 (112)
T PF01629_consen 58 KIKKIEIPPNTIVMPCAYMRHALGSVIDVGEEGPPRPV 95 (112)
T ss_pred EEEEEecCCCCEEEEchHhhccCccEEEEEeccCceee
Confidence 34456899999999999999987766543333334444
No 51
>TIGR02115 potass_kdpF K+-transporting ATPase, KdpF subunit. This model describes a very small integral membrane peptide KdpF, a subunit of the K(+)-translocating Kdp complex. It is found upstream of the KdpA subunit (TIGR00680). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation.
Probab=37.44 E-value=7.5 Score=16.70 Aligned_cols=7 Identities=29% Similarity=0.709 Sum_probs=4.3
Q ss_pred CCCCCcC
Q 037860 37 FTPGRLL 43 (97)
Q Consensus 37 f~P~R~~ 43 (97)
++||||.
T Consensus 19 l~PErF~ 25 (26)
T TIGR02115 19 LRPERFX 25 (26)
T ss_pred hCHHhcC
Confidence 4677763
No 52
>PF02663 FmdE: FmdE, Molybdenum formylmethanofuran dehydrogenase operon ; InterPro: IPR003814 Formylmethanofuran dehydrogenases (1.2.99.5 from EC) is found in methanogenic and sulphate-reducing archaea. The enzyme contains molybdenum or tungsten, a molybdopterin guanine dinuceotide cofactor (MGD) and iron-sulphur clusters []. It catalyses the reversible reduction of CO2 and methanofuran via N-carboxymethanofuran (carbamate) to N-formylmethanofuran, the first and second steps in methanogenesis from CO2 [, ]. This reaction is important for the reduction of CO2 to methane, in autotrophic CO2 fixation, and in CO2 formation from reduced C1 units []. The synthesis of formylmethanofuran is crucial for the energy metabolism of archaea. Methanogenic archaea derives the energy for autrophic growth from the reduction of CO2 with molecular hydrogen as the electron donor []. The process of methanogenesis consists of a series of reduction reactions at which the one-carbon unit derived from CO2 is bound to C1 carriers. There are two isoenzymes of formylmethanofuran dehydrogenase: a tungsten-containing isoenzyme (Fwd) and a molybdenum-containing isoenzyme (Fmd). The tungsten isoenzyme is constitutively transcribed, whereas transcription of the molybdenum operon is induced by molybdate []. The archaea Methanobacterium thermoautotrophicum contains a 4-subunit (FwdA, FwdB, FwdC, FwdD) tungsten formylmethanofuran dehydrogenase and a 3-subunit (FmdA, FmdB, FmdC) molybdenum formylmethanofuran dehydrogenase []. This entry represents subunit E of formylmethanofuran dehydrogenase enyzmes. The enzyme from Methanosarcina barkeri is a molybdenum iron-sulphur protein involved in methanogenesis. Subunit E protein is co-expressed with the enzyme but fails to co-purify and thus its function is unknown [].; PDB: 2GVI_A 3D00_A 2GLZ_A.
Probab=36.91 E-value=31 Score=20.31 Aligned_cols=21 Identities=29% Similarity=0.521 Sum_probs=15.4
Q ss_pred CCcCCcHHHHHHHHHHHHHHH
Q 037860 63 WQIYPGLPLAIKMLDLMLGSF 83 (97)
Q Consensus 63 ~~~C~G~~~a~~~~~~~~~~l 83 (97)
.|.|||..++....+.++..|
T Consensus 4 GH~Cpgl~~G~r~~~~a~~~l 24 (131)
T PF02663_consen 4 GHLCPGLALGYRMAKYALEEL 24 (131)
T ss_dssp SS--HHHHHHHHHHHHHHHHH
T ss_pred CCcCccHHHHHHHHHHHHHHc
Confidence 378999999998888777665
No 53
>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=36.20 E-value=8.5 Score=24.27 Aligned_cols=55 Identities=13% Similarity=0.117 Sum_probs=32.8
Q ss_pred CCCCCCCcCCCCCCCCCCccceeeccCCCCcCCc---HHHHHHHHHHHHHHHHHhCeee
Q 037860 35 CYFTPGRLLGSDIDFKGKNFELIPFGAGWQIYPG---LPLAIKMLDLMLGSFINSLIGS 90 (97)
Q Consensus 35 ~~f~P~R~~~~~~~~~~~~~~~~~fg~G~~~C~G---~~~a~~~~~~~~~~ll~~f~~~ 90 (97)
.+|+|++|-.--.....++...+-|+.|+=.|.| ..-|..-++. ++.+|++..+.
T Consensus 29 ~eYePe~fpgli~Rl~~Pk~t~lIF~SGKiviTGaks~e~a~~a~~~-i~~~L~~~g~~ 86 (174)
T cd04516 29 AEYNPKRFAAVIMRIREPKTTALIFSSGKMVCTGAKSEDDSKLAARK-YARIIQKLGFP 86 (174)
T ss_pred CEECCccCcEEEEEeCCCcEEEEEECCCeEEEEecCCHHHHHHHHHH-HHHHHHHcCCC
Confidence 6899998853222233345577889999999988 2223333332 34556665543
No 54
>KOG3506 consensus 40S ribosomal protein S29 [Translation, ribosomal structure and biogenesis]
Probab=34.90 E-value=18 Score=18.43 Aligned_cols=10 Identities=30% Similarity=0.481 Sum_probs=8.4
Q ss_pred eccCCCCcCC
Q 037860 58 PFGAGWQIYP 67 (97)
Q Consensus 58 ~fg~G~~~C~ 67 (97)
+||-|.|.|-
T Consensus 13 kfg~GsrsC~ 22 (56)
T KOG3506|consen 13 KFGQGSRSCR 22 (56)
T ss_pred ccCCCCccee
Confidence 6899999984
No 55
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=27.63 E-value=80 Score=17.55 Aligned_cols=22 Identities=9% Similarity=-0.044 Sum_probs=14.1
Q ss_pred EEcC--EEEcCCCEEEeehhhhcc
Q 037860 5 EIAN--FIALKCAKVLVNVWATVR 26 (97)
Q Consensus 5 ~l~g--~~ip~g~~v~~~~~~~~~ 26 (97)
.++| +.+.+|..++++....|+
T Consensus 37 ~~~~~~~~l~~g~~~li~p~~~H~ 60 (136)
T PF02311_consen 37 HIDGQEYPLKPGDLFLIPPGQPHS 60 (136)
T ss_dssp EETTEEEEE-TT-EEEE-TTS-EE
T ss_pred EECCEEEEEECCEEEEecCCccEE
Confidence 4454 789999999999888875
No 56
>PF07886 BA14K: BA14K-like protein; InterPro: IPR012413 The sequences found in this family are similar to the BA14K proteins expressed by Brucella abortus (Q44701 from SWISSPROT) and by Brucella suis (Q8FVU0 from SWISSPROT). BA14K was found to be strongly immunoreactive; it induces both humoral and cellular responses in hosts throughout the infective process [].
Probab=27.45 E-value=71 Score=14.21 Aligned_cols=14 Identities=7% Similarity=0.147 Sum_probs=11.1
Q ss_pred cceeeccCCCCcCC
Q 037860 54 FELIPFGAGWQIYP 67 (97)
Q Consensus 54 ~~~~~fg~G~~~C~ 67 (97)
-.++++.+.+|.|.
T Consensus 18 ~Ty~~~~G~r~~C~ 31 (31)
T PF07886_consen 18 NTYQPYDGPRRFCR 31 (31)
T ss_pred CcEeCCCCccccCc
Confidence 47899988888884
No 57
>cd04517 TLF TBP-like factors (TLF; also called TLP, TRF, TRP), which are found in most metazoans. TLFs and TBPs have well-conserved core domains; however, they only share about 60% similarity. TLFs, like TBPs, interact with TFIIA and TFIIB, which are part of the basal transcription machinery. Yet, in contrast to TBPs, TLFs seem not to interact with the TATA-box and even have a negative effect on the transcription of TATA-containing promoters. Recent results indicate that TLFs are involved in the transcription via TATA-less promoters.
Probab=25.27 E-value=55 Score=20.57 Aligned_cols=53 Identities=11% Similarity=0.084 Sum_probs=31.2
Q ss_pred CCCCCCCcCCCCCCCCCCccceeeccCCCCcCCcH---HHHHHHHHHHHHHHHHhCee
Q 037860 35 CYFTPGRLLGSDIDFKGKNFELIPFGAGWQIYPGL---PLAIKMLDLMLGSFINSLIG 89 (97)
Q Consensus 35 ~~f~P~R~~~~~~~~~~~~~~~~~fg~G~~~C~G~---~~a~~~~~~~~~~ll~~f~~ 89 (97)
.+|+| ||-.--.....+....+-|+.|+=.|.|- .-|..-++. +..++++..+
T Consensus 30 ~eYeP-~fpgli~R~~~Pk~t~lIF~sGKiviTGaks~~~~~~a~~~-~~~~l~~~g~ 85 (174)
T cd04517 30 VEYNP-RYPKVTMRLREPRATASVWSSGKITITGATSEEEAKQAARR-AARLLQKLGF 85 (174)
T ss_pred CEEeC-CCCEEEEEecCCcEEEEEECCCeEEEEccCCHHHHHHHHHH-HHHHHHHcCC
Confidence 68899 88432222233455778899999999874 233333333 3455555544
Done!