BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037861
         (273 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4DI8|A Chain A, Crystal Structure Of The D248a Mutant Of
           2-pyrone-4,6-dicarboxylic Acid Hydrolase From
           Sphingomonas Paucimobilis Complexed With Substrate At Ph
           8.5
 pdb|4DI8|B Chain B, Crystal Structure Of The D248a Mutant Of
           2-pyrone-4,6-dicarboxylic Acid Hydrolase From
           Sphingomonas Paucimobilis Complexed With Substrate At Ph
           8.5
 pdb|4DI9|A Chain A, Crystal Structure Of The D248a Mutant Of
           2-pyrone-4,6-dicarboxylic Acid Hydrolase From
           Sphingomonas Paucimobilis Complexed With Substrate At Ph
           6.5
          Length = 303

 Score = 35.4 bits (80), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 7/102 (6%)

Query: 43  NLTANLNPFTNDVVLQFVWQEVGHLRAIKN----TVKGFPRPLLDLSAGSFAKVIDKAFG 98
           ++   L PF + + +  V   +G     +      +K F R LLD     + K       
Sbjct: 160 DILEELRPFMDAIPVPIVIDHMGRPDVRQGPDGADMKAFRR-LLDSREDIWFKATCPDRL 218

Query: 99  KPLNPPLDPYANSINYLIASYLNPYVGLTGYVGANPNLQDAV 140
            P  PP D +A S+  L+A Y +  +  T +   +PN+QDA+
Sbjct: 219 DPAGPPWDDFARSVAPLVADYADRVIWGTAW--PHPNMQDAI 258


>pdb|4D8L|A Chain A, Crystal Structure Of The 2-pyrone-4,6-dicarboxylic Acid
           Hydrolase From Sphingomonas Paucimobilis
          Length = 303

 Score = 35.0 bits (79), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 7/102 (6%)

Query: 43  NLTANLNPFTNDVVLQFVWQEVGHLRAIKN----TVKGFPRPLLDLSAGSFAKVIDKAFG 98
           ++   L PF + + +  V   +G     +      +K F R LLD     + K       
Sbjct: 160 DILEELRPFMDAIPVPIVIDHMGRPDVRQGPDGADMKAFRR-LLDSREDIWFKATCPDRL 218

Query: 99  KPLNPPLDPYANSINYLIASYLNPYVGLTGYVGANPNLQDAV 140
            P  PP D +A S+  L+A Y +  +  T +   +PN+QDA+
Sbjct: 219 DPAGPPWDDFARSVAPLVADYADRVIWGTDW--PHPNMQDAI 258


>pdb|4DIA|A Chain A, Crystal Structure Of The D248n Mutant Of
           2-pyrone-4,6-dicarboxylic Acid Hydrolase From
           Sphingomonas Paucimobilis Complexed With Substrate At Ph
           4.6
          Length = 303

 Score = 35.0 bits (79), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 7/102 (6%)

Query: 43  NLTANLNPFTNDVVLQFVWQEVGHLRAIKN----TVKGFPRPLLDLSAGSFAKVIDKAFG 98
           ++   L PF + + +  V   +G     +      +K F R LLD     + K       
Sbjct: 160 DILEELRPFMDAIPVPIVIDHMGRPDVRQGPDGADMKAFRR-LLDSREDIWFKATCPDRL 218

Query: 99  KPLNPPLDPYANSINYLIASYLNPYVGLTGYVGANPNLQDAV 140
            P  PP D +A S+  L+A Y +  +  T +   +PN+QDA+
Sbjct: 219 DPAGPPWDDFARSVAPLVADYADRVIWGTNW--PHPNMQDAI 258


>pdb|3LFU|A Chain A, Crystal Structure Of E. Coli Uvrd
          Length = 647

 Score = 34.3 bits (77), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 4/79 (5%)

Query: 148 LLGVKSGQDAI-IRTLLYQKANEKVHPYGIPVAAFTNK-ISQMRNNLGR-SGLKDEGLLV 204
           L G  SG+  + +  + +  + E   PY I    FTNK  ++MR+ +G+  G    G+ V
Sbjct: 28  LAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGTSQGGMWV 87

Query: 205 PKFHG-TERKIRGNVLAGN 222
             FHG   R +R + +  N
Sbjct: 88  GTFHGLAHRLLRAHHMDAN 106


>pdb|2IS1|A Chain A, Crystal Structure Of Uvrd-Dna-So4 Complex
 pdb|2IS1|B Chain B, Crystal Structure Of Uvrd-Dna-So4 Complex
 pdb|2IS2|A Chain A, Crystal Structure Of Uvrd-Dna Binary Complex
 pdb|2IS2|B Chain B, Crystal Structure Of Uvrd-Dna Binary Complex
 pdb|2IS4|A Chain A, Crystal Structure Of Uvrd-Dna-Adpnp Ternary Complex
 pdb|2IS4|B Chain B, Crystal Structure Of Uvrd-Dna-Adpnp Ternary Complex
 pdb|2IS6|A Chain A, Crystal Structure Of Uvrd-Dna-Adpmgf3 Ternary Complex
 pdb|2IS6|B Chain B, Crystal Structure Of Uvrd-Dna-Adpmgf3 Ternary Complex
          Length = 680

 Score = 34.3 bits (77), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 4/79 (5%)

Query: 148 LLGVKSGQDAI-IRTLLYQKANEKVHPYGIPVAAFTNK-ISQMRNNLGR-SGLKDEGLLV 204
           L G  SG+  + +  + +  + E   PY I    FTNK  ++MR+ +G+  G    G+ V
Sbjct: 28  LAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGTSQGGMWV 87

Query: 205 PKFHG-TERKIRGNVLAGN 222
             FHG   R +R + +  N
Sbjct: 88  GTFHGLAHRLLRAHHMDAN 106


>pdb|3LOO|A Chain A, Crystal Structure Of Anopheles Gambiae Adenosine Kinase In
           Complex With P1,P4-Di(Adenosine-5) Tetraphosphate
 pdb|3LOO|B Chain B, Crystal Structure Of Anopheles Gambiae Adenosine Kinase In
           Complex With P1,P4-Di(Adenosine-5) Tetraphosphate
 pdb|3LOO|C Chain C, Crystal Structure Of Anopheles Gambiae Adenosine Kinase In
           Complex With P1,P4-Di(Adenosine-5) Tetraphosphate
          Length = 365

 Score = 29.6 bits (65), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 63/163 (38%), Gaps = 21/163 (12%)

Query: 66  HLRAIKN-TVKGFPRPLLDLSAGSFAKVIDKAFGKPLNPPLDPYANSINY--LIASYLNP 122
           H+ ++++  + G   PLLD+SA     +++K   +P N  L    +   Y  LI  Y   
Sbjct: 17  HMESLRDGMLVGLGNPLLDISAVVEKDLLNKYDMQPNNAILAEEKHMPMYQELIEKYQAE 76

Query: 123 YVGLTGYVGANPNLQDAVSQRLAAGLLGVKSGQDAIIRTLLYQKANEKVHPYGIPVAAFT 182
           Y+   G V  +  +   + QR    +     GQD   R L      E+    G+ V    
Sbjct: 77  YIA-GGSVQNSLRVAQWILQRPRTAIFFGCVGQDEYARIL-----EERATSNGVNV---- 126

Query: 183 NKISQMRNNLGRSGLKDEGLLVPKFHGTERKIRGNVLAGNEYS 225
                      RS     G       GT+R +  N+ A N+++
Sbjct: 127 --------QYQRSATSPTGTCAVLVTGTQRSLCANLAAANDFT 161


>pdb|3AIU|A Chain A, Crystal Structure Of Beta-Glucosidase In Rye
 pdb|3AIV|A Chain A, Crystal Structure Of Beta-Glucosidase In Rye Complexed
           With An Aglycone Dimboa
 pdb|3AIW|A Chain A, Crystal Structure Of Beta-Glucosidase In Rye Complexed
           With 2-Deoxy-2- Fluoroglucoside And Dinitrophenol
          Length = 564

 Score = 27.3 bits (59), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 14/39 (35%), Positives = 22/39 (56%)

Query: 88  SFAKVIDKAFGKPLNPPLDPYANSINYLIASYLNPYVGL 126
           S+++++    GKP    +D Y N IN LI   + PYV +
Sbjct: 150 SWSRILPNGTGKPNQKGIDYYNNLINSLIRHGIVPYVTI 188


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.140    0.418 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,677,767
Number of Sequences: 62578
Number of extensions: 371082
Number of successful extensions: 759
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 758
Number of HSP's gapped (non-prelim): 7
length of query: 273
length of database: 14,973,337
effective HSP length: 97
effective length of query: 176
effective length of database: 8,903,271
effective search space: 1566975696
effective search space used: 1566975696
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)