Query 037861
Match_columns 273
No_of_seqs 186 out of 351
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 05:05:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037861.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037861hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13668 Ferritin_2: Ferritin- 100.0 2.1E-33 4.6E-38 231.7 12.9 134 9-165 1-137 (137)
2 cd01045 Ferritin_like_AB Uncha 98.6 5.5E-07 1.2E-11 71.8 9.6 134 12-162 1-138 (139)
3 cd00657 Ferritin_like Ferritin 98.5 3.9E-06 8.5E-11 63.8 11.8 129 12-163 1-130 (130)
4 PF02915 Rubrerythrin: Rubrery 97.8 0.00012 2.6E-09 58.4 8.6 127 12-162 1-136 (137)
5 cd01048 Ferritin_like_AB2 Unch 97.7 0.00017 3.6E-09 60.4 8.4 124 11-156 2-128 (135)
6 COG1633 Uncharacterized conser 97.1 0.0098 2.1E-07 52.4 12.1 143 9-166 24-169 (176)
7 cd07908 Mn_catalase_like Manga 97.0 0.0073 1.6E-07 50.8 10.1 124 20-163 27-154 (154)
8 PRK12775 putative trifunctiona 96.9 0.011 2.5E-07 64.0 13.0 141 8-169 859-1001(1006)
9 PRK13456 DNA protection protei 96.8 0.015 3.3E-07 51.9 10.6 135 11-167 22-166 (186)
10 cd01044 Ferritin_CCC1_N Ferrit 96.5 0.057 1.2E-06 44.1 11.6 121 13-164 2-124 (125)
11 cd01052 DPSL DPS-like protein, 96.2 0.14 2.9E-06 42.2 12.1 138 11-163 8-148 (148)
12 cd00907 Bacterioferritin Bacte 96.0 0.23 4.9E-06 41.1 12.8 127 11-166 7-140 (153)
13 PF13668 Ferritin_2: Ferritin- 94.9 0.095 2.1E-06 43.0 6.6 56 8-75 81-136 (137)
14 cd01051 Mn_catalase Manganese 94.0 0.66 1.4E-05 40.0 10.2 99 48-165 51-154 (156)
15 cd01045 Ferritin_like_AB Uncha 93.9 0.19 4.1E-06 39.7 6.2 55 7-73 84-138 (139)
16 cd07908 Mn_catalase_like Manga 93.7 0.25 5.4E-06 41.5 6.8 55 8-74 100-154 (154)
17 PRK10635 bacterioferritin; Pro 92.6 4 8.8E-05 35.2 12.8 131 11-167 8-142 (158)
18 TIGR02284 conserved hypothetic 92.2 4.2 9.2E-05 34.2 12.2 128 11-162 2-138 (139)
19 cd01041 Rubrerythrin Rubreryth 89.9 7.5 0.00016 31.8 11.4 126 10-165 2-132 (134)
20 PF14530 DUF4439: Domain of un 89.6 1.2 2.6E-05 37.6 6.4 117 14-164 2-124 (131)
21 PF02915 Rubrerythrin: Rubrery 88.7 1.1 2.4E-05 35.3 5.4 52 10-73 85-136 (137)
22 PF09968 DUF2202: Uncharacteri 88.6 15 0.00032 32.3 12.7 149 11-185 2-159 (162)
23 cd00657 Ferritin_like Ferritin 88.1 2.4 5.2E-05 31.6 6.7 55 8-74 76-130 (130)
24 TIGR00754 bfr bacterioferritin 85.2 21 0.00046 29.9 13.2 130 11-166 8-141 (157)
25 PF00210 Ferritin: Ferritin-li 83.5 20 0.00043 28.2 11.0 132 11-165 1-138 (142)
26 cd01046 Rubrerythrin_like rubr 82.9 19 0.00041 29.4 10.1 115 12-165 4-121 (123)
27 cd01055 Nonheme_Ferritin nonhe 82.8 26 0.00056 29.0 12.1 130 11-165 5-138 (156)
28 cd01042 DMQH Demethoxyubiquino 81.8 4.5 9.7E-05 35.5 6.3 106 48-161 27-136 (165)
29 PRK12775 putative trifunctiona 79.7 4.9 0.00011 44.1 7.1 56 8-75 940-996 (1006)
30 cd01041 Rubrerythrin Rubreryth 78.8 5.3 0.00011 32.7 5.5 58 9-75 73-131 (134)
31 COG2406 Protein distantly rela 78.8 39 0.00084 29.7 10.8 133 13-168 21-164 (172)
32 cd01048 Ferritin_like_AB2 Unch 73.0 13 0.00027 31.0 6.3 56 5-72 78-133 (135)
33 PF03232 COQ7: Ubiquinone bios 70.7 41 0.00089 29.6 9.2 34 49-82 31-65 (172)
34 PRK13456 DNA protection protei 67.8 22 0.00048 31.9 7.0 58 11-78 109-166 (186)
35 PF11272 DUF3072: Protein of u 65.8 16 0.00036 26.9 4.8 39 153-193 18-56 (57)
36 PRK10635 bacterioferritin; Pro 64.3 26 0.00055 30.2 6.6 58 9-75 82-139 (158)
37 cd01051 Mn_catalase Manganese 62.8 33 0.00072 29.5 7.0 54 10-75 100-153 (156)
38 cd00907 Bacterioferritin Bacte 61.9 25 0.00053 28.9 5.9 58 9-75 81-138 (153)
39 PRK13654 magnesium-protoporphy 59.8 13 0.00028 36.4 4.2 55 112-166 85-141 (355)
40 COG1633 Uncharacterized conser 59.7 31 0.00067 30.4 6.4 57 7-75 111-167 (176)
41 cd01047 ACSF Aerobic Cyclase S 58.9 13 0.00027 36.0 4.0 55 112-166 65-121 (323)
42 PF09537 DUF2383: Domain of un 57.5 43 0.00093 26.3 6.3 104 11-132 3-108 (111)
43 cd01046 Rubrerythrin_like rubr 54.0 44 0.00095 27.2 6.0 59 8-75 62-120 (123)
44 CHL00185 ycf59 magnesium-proto 52.7 18 0.00039 35.3 4.0 55 112-166 81-137 (351)
45 PLN02508 magnesium-protoporphy 52.0 17 0.00037 35.5 3.7 55 112-166 81-137 (357)
46 TIGR02029 AcsF magnesium-proto 51.7 17 0.00037 35.3 3.7 55 112-166 75-131 (337)
47 cd01055 Nonheme_Ferritin nonhe 51.2 44 0.00096 27.6 5.8 58 9-75 80-137 (156)
48 PF04305 DUF455: Protein of un 50.2 28 0.0006 32.5 4.7 60 46-106 177-237 (253)
49 PF00210 Ferritin: Ferritin-li 47.5 50 0.0011 25.9 5.3 58 9-75 80-137 (142)
50 cd01044 Ferritin_CCC1_N Ferrit 45.4 44 0.00096 27.0 4.7 55 115-169 3-57 (125)
51 COG2193 Bfr Bacterioferritin ( 45.3 35 0.00075 29.9 4.2 58 9-75 82-139 (157)
52 PF12902 Ferritin-like: Ferrit 44.9 60 0.0013 29.7 6.0 61 14-83 1-62 (227)
53 COG2941 CAT5 Ubiquinone biosyn 44.2 43 0.00093 30.5 4.8 34 49-82 69-103 (204)
54 PF03232 COQ7: Ubiquinone bios 43.6 52 0.0011 29.0 5.2 55 116-173 8-63 (172)
55 PF11220 DUF3015: Protein of u 43.0 48 0.001 28.6 4.8 63 119-187 69-131 (144)
56 PF11553 DUF3231: Protein of u 40.2 2.3E+02 0.005 24.0 8.6 103 48-167 44-152 (166)
57 cd01050 Acyl_ACP_Desat Acyl AC 37.8 3.6E+02 0.0079 25.8 10.3 109 50-167 93-206 (297)
58 cd01052 DPSL DPS-like protein, 34.7 1.7E+02 0.0037 23.6 6.7 57 8-74 92-148 (148)
59 COG4902 Uncharacterized protei 33.6 1E+02 0.0022 27.3 5.2 56 14-85 54-111 (189)
60 TIGR00754 bfr bacterioferritin 33.1 1.8E+02 0.004 24.2 6.8 58 9-75 82-139 (157)
61 PF13628 DUF4142: Domain of un 32.6 2.7E+02 0.0059 22.6 8.2 108 47-161 28-138 (139)
62 PF11583 AurF: P-aminobenzoate 32.3 1.1E+02 0.0025 28.2 5.9 112 48-169 110-230 (304)
63 COG1867 TRM1 N2,N2-dimethylgua 30.9 34 0.00075 33.9 2.2 63 104-167 126-195 (380)
64 COG2406 Protein distantly rela 29.9 73 0.0016 28.1 3.8 58 8-75 102-160 (172)
65 PF04305 DUF455: Protein of un 29.4 3.9E+02 0.0085 25.0 8.8 137 11-168 68-214 (253)
66 PF05974 DUF892: Domain of unk 26.6 98 0.0021 26.4 4.1 113 48-163 32-150 (159)
67 TIGR02284 conserved hypothetic 25.0 2.4E+02 0.0052 23.6 6.0 79 122-203 12-90 (139)
68 cd00904 Ferritin Ferritin iron 24.0 4.4E+02 0.0095 22.2 7.7 97 11-130 5-103 (160)
69 cd01042 DMQH Demethoxyubiquino 23.0 1.2E+02 0.0026 26.6 3.9 46 122-167 12-57 (165)
70 COG3546 Mn-containing catalase 21.2 7.4E+02 0.016 23.8 10.1 119 49-169 51-192 (277)
71 COG1113 AnsP Gamma-aminobutyra 20.2 32 0.0007 35.0 -0.2 54 70-132 62-120 (462)
72 PF03713 DUF305: Domain of unk 20.0 4.3E+02 0.0094 21.8 6.7 106 49-163 28-151 (151)
No 1
>PF13668 Ferritin_2: Ferritin-like domain
Probab=100.00 E-value=2.1e-33 Score=231.73 Aligned_cols=134 Identities=37% Similarity=0.634 Sum_probs=125.2
Q ss_pred CchhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhh-c--CCCCCcccCC
Q 037861 9 SDVDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTV-K--GFPRPLLDLS 85 (273)
Q Consensus 9 ~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aL-g--a~~~P~id~s 85 (273)
+|++||||||+|||||.+||.+++.+.+++. . ...+++.+++++++|+.||..|+++|+++| | ++++|.||+
T Consensus 1 ~D~~iL~~Al~lE~l~~~fY~~~~~~~~~~~-~---~~~~~~~~~~~~~~i~~~E~~H~~~l~~~l~g~~~~~~~~~~~- 75 (137)
T PF13668_consen 1 GDLDILNFALNLEYLEADFYQQAAEGFTLQD-N---KAALDPEVRDLFQEIADQEQGHVDFLQAALEGGRPVPPPAYDF- 75 (137)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcCChhh-h---hccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcccc-
Confidence 6999999999999999999999998887654 2 156899999999999999999999999999 6 778999987
Q ss_pred cchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhhhhhccccccCCCHHHHHHHHhHHHhhhhhHHHHHHHHHh
Q 037861 86 AGSFAKVIDKAFGKPLNPPLDPYANSINYLIASYLNPYVGLTGYVGANPNLQDAVSQRLAAGLLGVKSGQDAIIRTLLYQ 165 (273)
Q Consensus 86 ~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvsAY~Gaap~l~~~~~l~~AA~Il~VEA~Haa~IR~lL~~ 165 (273)
+||||+|+.+||..|+.||++|+++|+|++++++|+++++++++|++||++|++|||++|+|
T Consensus 76 ------------------~~~~~~~~~~~L~~A~~~E~~~~~~Y~g~~~~~~~~~~~~~~~~i~~~Ea~H~~~ir~ll~~ 137 (137)
T PF13668_consen 76 ------------------PFDPFTDDASFLRLAYTLEDVGVSAYKGAAPQIEDPELKALAASIAGVEARHAAWIRNLLGQ 137 (137)
T ss_pred ------------------ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 38999999999999999999999999999999999999999999999999999999999985
No 2
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.
Probab=98.56 E-value=5.5e-07 Score=71.79 Aligned_cols=134 Identities=15% Similarity=0.194 Sum_probs=103.8
Q ss_pred hhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhcCC---CCCcccCCcch
Q 037861 12 DLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVKGF---PRPLLDLSAGS 88 (273)
Q Consensus 12 diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLga~---~~P~id~s~~~ 88 (273)
+|||.|+.+|.....||...+.-. -++.++.+++.++.+|..|...|...++.. +-|..... .
T Consensus 1 ~~l~~a~~~E~~~~~~Y~~~a~~~------------~~~~~~~~~~~la~eE~~H~~~l~~~~~~~~~~~~~~~~~~--~ 66 (139)
T cd01045 1 EILALAIKMEEEAAEFYLELAEKA------------KDPELKKLFEELAEEEKEHAERLEELYEKLFGEELPELEPE--D 66 (139)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhHC------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCcccHH--H
Confidence 589999999999999999985321 356899999999999999999999998722 44544432 1
Q ss_pred HHHHHHHhcCCCCC-CCCCCCCChHHHHHHHhhccchhhhhhccccccCCCHHHHHHHHhHHHhhhhhHHHHHHH
Q 037861 89 FAKVIDKAFGKPLN-PPLDPYANSINYLIASYLNPYVGLTGYVGANPNLQDAVSQRLAAGLLGVKSGQDAIIRTL 162 (273)
Q Consensus 89 F~~~~~~A~g~~l~-p~FdPy~n~~~FL~~A~~~E~VGvsAY~Gaap~l~~~~~l~~AA~Il~VEA~Haa~IR~l 162 (273)
+.... .+.... ..+.+-.+....|..+.-+|..++.-|.-.+..+.++..+.+...|...|.+|...+|.+
T Consensus 67 ~~~~~---~~~~~~~~~~~~~~~~~~~l~~a~~~E~~~~~~Y~~~~~~~~d~~~~~~~~~l~~~E~~H~~~l~~~ 138 (139)
T cd01045 67 YKEEV---EEEPEFKKALESLMDPLEALRLAIEIEKDAIEFYEELAEKAEDPEVKKLFEELAEEERGHLRLLEEL 138 (139)
T ss_pred HHHHH---hhhhhHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11110 010000 011234678889999999999999999999999999999999999999999999999975
No 3
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub
Probab=98.46 E-value=3.9e-06 Score=63.79 Aligned_cols=129 Identities=19% Similarity=0.117 Sum_probs=100.1
Q ss_pred hhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc-CCCCCcccCCcchHH
Q 037861 12 DLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVK-GFPRPLLDLSAGSFA 90 (273)
Q Consensus 12 diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg-a~~~P~id~s~~~F~ 90 (273)
.+||-++..|+....+|...+... -++.++.++.+++.+|..|...|.+.+. -...|..... .+.
T Consensus 1 ~~L~~~~~~E~~a~~~y~~~~~~~------------~~~~~~~~~~~~a~~E~~H~~~l~~~~~~~g~~~~~~~~--~~~ 66 (130)
T cd00657 1 RLLNDALAGEYAAIIAYGQLAARA------------PDPDLKDELLEIADEERRHADALAERLRELGGTPPLPPA--HLL 66 (130)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHc------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHH--HHH
Confidence 368999999999999999885321 2688999999999999999999999876 1122222211 000
Q ss_pred HHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhhhhhccccccCCCHHHHHHHHhHHHhhhhhHHHHHHHH
Q 037861 91 KVIDKAFGKPLNPPLDPYANSINYLIASYLNPYVGLTGYVGANPNLQDAVSQRLAAGLLGVKSGQDAIIRTLL 163 (273)
Q Consensus 91 ~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvsAY~Gaap~l~~~~~l~~AA~Il~VEA~Haa~IR~lL 163 (273)
.. . ++..+..+....|..+...|..++..|...+..+.+++++.....|...|.+|...++.++
T Consensus 67 ----~~-~----~~~~~~~~~~~~l~~~~~~E~~~~~~y~~~~~~~~d~~~~~~~~~~~~~E~~H~~~~~~~~ 130 (130)
T cd00657 67 ----AA-Y----ALPKTSDDPAEALRAALEVEARAIAAYRELIEQADDPELRRLLERILADEQRHAAWFRKLL 130 (130)
T ss_pred ----Hh-c----ccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 01 1 1223346777888999999999999999999999999999999999999999999988653
No 4
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin []. The physiological role of Rr has not been identified. The 3-D structure of Desulphovibrio vulgaris rubrerythrin has been solved []. The structure reveals a tetramer of two-domain subunits. In each monomer, the N-terminal 146 residues form a four-alpha-helix bundle containing the diiron-oxo site (centre I), and the C-terminal 45 residues form a rubredoxin-like FeS4 domain.; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1VJX_A 2FZF_A 3SID_B 3QHC_B 3QHB_B 4DI0_A 1J30_B 1YV1_A 1YUZ_B 1YUX_B ....
Probab=97.82 E-value=0.00012 Score=58.38 Aligned_cols=127 Identities=14% Similarity=0.149 Sum_probs=98.2
Q ss_pred hhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc-CCC--CCcccCCcch
Q 037861 12 DLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVK-GFP--RPLLDLSAGS 88 (273)
Q Consensus 12 diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg-a~~--~P~id~s~~~ 88 (273)
++|+.|+..|.-...||...+.... .-.|.++.++.+++.+|..|.++|.+.+. -.+ .|.+.-.
T Consensus 1 e~L~~A~~~E~~~~~~Y~~~a~~~~----------~~~p~~~~~f~~lA~~E~~H~~~~~~l~~~~~~~~~~~~~~~--- 67 (137)
T PF02915_consen 1 EILEMAIKMELEAAKFYRELAEKAK----------DEGPELKELFRRLAEEEQEHAKFLEKLLRKLGPGEEPPFLEE--- 67 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----------HTTHHHHHHHHHHHHHHHHHHHHHHHHHCHCSTTHHTHCHCC---
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhh----------hcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchhhh---
Confidence 6899999999999999998853210 01178999999999999999999999988 222 2321100
Q ss_pred HHHHHHHhcCCCCCCCCCC------CCChHHHHHHHhhccchhhhhhccccccCCCHHHHHHHHhHHHhhhhhHHHHHHH
Q 037861 89 FAKVIDKAFGKPLNPPLDP------YANSINYLIASYLNPYVGLTGYVGANPNLQDAVSQRLAAGLLGVKSGQDAIIRTL 162 (273)
Q Consensus 89 F~~~~~~A~g~~l~p~FdP------y~n~~~FL~~A~~~E~VGvsAY~Gaap~l~~~~~l~~AA~Il~VEA~Haa~IR~l 162 (273)
...+.+.+ -.|....+..+...|.-++.-|.-.+..+.++..++..-.|...|.+|...++.+
T Consensus 68 -----------~~~~~~~~~~~~~~~~~~~~~l~~a~~~E~~~~~~Y~~~a~~~~~~~~~~~~~~l~~~E~~H~~~l~~l 136 (137)
T PF02915_consen 68 -----------KVEYSFFPKLEEETDENLEEALEMAIKEEKDAYEFYAELARKAPDPEIRKLFEELAKEEKEHEDLLEKL 136 (137)
T ss_dssp -----------CCCHCCCCTCCSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------hhhhhhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 01111222 1246778888999999999999999999999999999999999999999998865
No 5
>cd01048 Ferritin_like_AB2 Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria, subgroup 2 (Ferritin_like_AB2). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. The conserved residues of a diiron center are present within the putative active site.
Probab=97.73 E-value=0.00017 Score=60.39 Aligned_cols=124 Identities=17% Similarity=0.184 Sum_probs=97.9
Q ss_pred hhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc--CCCCCcccCCcch
Q 037861 11 VDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVK--GFPRPLLDLSAGS 88 (273)
Q Consensus 11 ~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg--a~~~P~id~s~~~ 88 (273)
.++|.||+..|++..+||...+-.+| .+.++..|+..|+.|..+|+..+. .+|.|..+...+.
T Consensus 2 ~~~L~~Ale~Ek~a~~~Y~~~~~k~~---------------~~~~F~~la~~E~~H~~~l~~L~~~~~~~~p~~~~~~~~ 66 (135)
T cd01048 2 IAALLYALEEEKLARDVYLALYEKFG---------------GLRPFSNIAESEQRHMDALKTLLERYGLPDPVDPFSGGV 66 (135)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhc---------------CcchHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcccccc
Confidence 57899999999999999998853321 456789999999999999999998 8888877765444
Q ss_pred HHHHH-HHhcCCCCCCCCCCCCChHHHHHHHhhccchhhhhhccccccCCCHHHHHHHHhHHHhhhhhH
Q 037861 89 FAKVI-DKAFGKPLNPPLDPYANSINYLIASYLNPYVGLTGYVGANPNLQDAVSQRLAAGLLGVKSGQD 156 (273)
Q Consensus 89 F~~~~-~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvsAY~Gaap~l~~~~~l~~AA~Il~VEA~Ha 156 (273)
|...- +... -..-.+..+-|..+..+|...+.=|.-++...+|++++.+--.+...|-.|-
T Consensus 67 f~~~~~~~l~-------~~~~~s~~~al~~g~~~E~~~i~~ye~~~~~~~d~d~k~v~~~L~~~e~~H~ 128 (135)
T cd01048 67 FTNPQYNQLV-------EQGPKSLQDALEVGVLIEELDIADYDRLLERTQNPDIRDVFENLQAASRNHH 128 (135)
T ss_pred ccchhHHHHH-------HhccccHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 43110 0000 0123577888999999999999999999999999999999988888888875
No 6
>COG1633 Uncharacterized conserved protein [Function unknown]
Probab=97.11 E-value=0.0098 Score=52.35 Aligned_cols=143 Identities=13% Similarity=0.092 Sum_probs=104.8
Q ss_pred CchhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc-CCCCCcccCCcc
Q 037861 9 SDVDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVK-GFPRPLLDLSAG 87 (273)
Q Consensus 9 ~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg-a~~~P~id~s~~ 87 (273)
+-.++|++|+..|.=.-.||.+.+-- .-++.++.++.+|+.+|..|.+-+++.+. -.|+|.-.....
T Consensus 24 ~~~e~L~~Ai~~E~eA~~fY~~lae~------------~~~~~~rk~~~~la~eE~~H~~~f~~l~~~~~~~~~~~~~~~ 91 (176)
T COG1633 24 SIEELLAIAIRGELEAIKFYEELAER------------IEDEEIRKLFEDLADEEMRHLRKFEKLLEKLTPKEVSSEEEE 91 (176)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHh------------cCCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhh
Confidence 55799999999999999999998521 23679999999999999999999999887 444542221110
Q ss_pred hHHHHHHHhcCCCCCC--CCCCCCChHHHHHHHhhccchhhhhhccccccCCCHHHHHHHHhHHHhhhhhHHHHHHHHHh
Q 037861 88 SFAKVIDKAFGKPLNP--PLDPYANSINYLIASYLNPYVGLTGYVGANPNLQDAVSQRLAAGLLGVKSGQDAIIRTLLYQ 165 (273)
Q Consensus 88 ~F~~~~~~A~g~~l~p--~FdPy~n~~~FL~~A~~~E~VGvsAY~Gaap~l~~~~~l~~AA~Il~VEA~Haa~IR~lL~~ 165 (273)
.+. .........| .++.=.|...-+..|.--|--.+--|...+-.+.|.+.+++.-.|...|=+|...++..+..
T Consensus 92 ~~~---~~~~~~~~~~~~~~~~~~~~~~~I~~a~~~E~~t~~~Y~~~~~~~~~~~~~~~~~~~a~~E~~H~~~l~~~~~~ 168 (176)
T COG1633 92 GEI---ESEILEYLQPGKEMEKSVSYLEAIEAAMEAEKDTIEFYEELLDELVNEEAKKLFKTIADDEKGHASGLLSLYNR 168 (176)
T ss_pred cch---hhhhccccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 0000111111 23333444455566777799999999999999999999999999999999999999987765
Q ss_pred h
Q 037861 166 K 166 (273)
Q Consensus 166 ~ 166 (273)
.
T Consensus 169 ~ 169 (176)
T COG1633 169 L 169 (176)
T ss_pred H
Confidence 4
No 7
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain. This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=97.01 E-value=0.0073 Score=50.79 Aligned_cols=124 Identities=15% Similarity=0.135 Sum_probs=89.7
Q ss_pred HHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc---CCCCCcccCCcchHHHHHHHh
Q 037861 20 LEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVK---GFPRPLLDLSAGSFAKVIDKA 96 (273)
Q Consensus 20 LEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg---a~~~P~id~s~~~F~~~~~~A 96 (273)
-|+-....|.+-.... ..-++.+++++.+++.+|..|...|...++ +.|...-.. ...|
T Consensus 27 ~E~~ai~~Y~y~~~~~----------~~~~~~~k~~f~~lA~eE~~H~~~l~~~i~~lgg~p~~~~~~-~~~~------- 88 (154)
T cd07908 27 SELTAISQYIYQHLIS----------EEKYPEIAETFLGIAIVEMHHLEILGQLIVLLGGDPRYRSSS-SDKF------- 88 (154)
T ss_pred hHHHHHHHHHHHHHHc----------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhc-cccC-------
Confidence 5666666666654321 113689999999999999999999998865 433311110 0000
Q ss_pred cCCCCCC-CCCCCCChHHHHHHHhhccchhhhhhccccccCCCHHHHHHHHhHHHhhhhhHHHHHHHH
Q 037861 97 FGKPLNP-PLDPYANSINYLIASYLNPYVGLTGYVGANPNLQDAVSQRLAAGLLGVKSGQDAIIRTLL 163 (273)
Q Consensus 97 ~g~~l~p-~FdPy~n~~~FL~~A~~~E~VGvsAY~Gaap~l~~~~~l~~AA~Il~VEA~Haa~IR~lL 163 (273)
....+ .+.+-.+....|..+..+|.-++.-|..++..+.|++.+.+.-.|+.-|-.|..++..+|
T Consensus 89 --~~~~~~~~~~~~~~~~~L~~~~~~E~~ai~~Y~~~~~~~~d~~~r~ll~~I~~eE~~H~~~L~~~l 154 (154)
T cd07908 89 --TYWTGKYVNYGESIKEMLKLDIASEKAAIAKYKRQAETIKDPYIRALLNRIILDEKLHIKILEELL 154 (154)
T ss_pred --CcCCccccCCccCHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 00111 112234677799999999999999999999999999999999999999999999987764
No 8
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=96.92 E-value=0.011 Score=64.03 Aligned_cols=141 Identities=11% Similarity=0.108 Sum_probs=109.7
Q ss_pred CCchhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc-CCCCCcccCCc
Q 037861 8 QSDVDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVK-GFPRPLLDLSA 86 (273)
Q Consensus 8 ~~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg-a~~~P~id~s~ 86 (273)
.++.+||.+|+.+|-=--+||...+-. --++.+++++.++|..|..|.+.|++.+. ..|.+.-++.
T Consensus 859 ~~~~eil~~Ai~mE~~g~~FY~~~A~~------------a~~~~~K~lF~~LA~eE~~H~~~l~~~~~~~~~~~~~~~~- 925 (1006)
T PRK12775 859 AAALEAIRTAFEIELGGMAFYARAAKE------------TSDPVLKELFLKFAGMEQEHMATLARRYHAAAPSPTEGFK- 925 (1006)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHH------------cCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccc-
Confidence 467899999999999999999999632 14789999999999999999999988876 3333322221
Q ss_pred chHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhhhhhccccccCCCHH-HHHHHHhHHHhhhhhHHHHHHHHHh
Q 037861 87 GSFAKVIDKAFGKPLNPPLDPYANSINYLIASYLNPYVGLTGYVGANPNLQDAV-SQRLAAGLLGVKSGQDAIIRTLLYQ 165 (273)
Q Consensus 87 ~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvsAY~Gaap~l~~~~-~l~~AA~Il~VEA~Haa~IR~lL~~ 165 (273)
.+. ...-..+ +.+..++.+.|..|.-+|.=.+.=|..++-...|++ .+++.-.|..-|-.|-..+..++.+
T Consensus 926 -~~~----~~~~~~~---~~~~~~~~~al~lAm~~Ekdai~fY~~la~~~~d~e~~k~l~~~LA~EEk~Hl~~L~~~~d~ 997 (1006)
T PRK12775 926 -IER----AAIMAGV---KGRPDDPGNLFRIAIEFERRAVKFFKERVAETPDGSVERQLYKELAAEEREHVALLTTEFER 997 (1006)
T ss_pred -cch----hhhhhhh---ccccCCHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 0000011 122356788999999999999999999999999986 6999999999999999999999888
Q ss_pred hhcc
Q 037861 166 KANE 169 (273)
Q Consensus 166 ~~~~ 169 (273)
.++-
T Consensus 998 ~~~~ 1001 (1006)
T PRK12775 998 WKQG 1001 (1006)
T ss_pred Hhcc
Confidence 7654
No 9
>PRK13456 DNA protection protein DPS; Provisional
Probab=96.78 E-value=0.015 Score=51.85 Aligned_cols=135 Identities=17% Similarity=0.119 Sum_probs=99.6
Q ss_pred hhhhhhHHHHHHHHHHHHHhcccC-CCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhh---cCCC--CC--cc
Q 037861 11 VDLLEFPLNLEYLEAEFFLFGSLG-HGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTV---KGFP--RP--LL 82 (273)
Q Consensus 11 ~diLNFALnLEyLEa~FY~~a~~G-~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aL---ga~~--~P--~i 82 (273)
+++||=||.-|++-.=.|....+- .|+ ..+.+...+++-+.+|..|...|-.-| |+.| .| .+
T Consensus 22 i~lLn~AlA~E~~a~~~Y~~~a~~~~G~----------~~e~V~e~le~a~~EEl~HA~~lAeRI~qLGG~P~~~p~~~~ 91 (186)
T PRK13456 22 VELLVKNAAAEFTTYYYYTILRAHLIGL----------EGEGLKEIAEDARLEDRNHFEALVPRIYELGGKLPRDIREFH 91 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCc----------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHh
Confidence 789999999999887777665432 222 347888999999999999999998664 4433 12 23
Q ss_pred cCCcchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhhhhhccccccCC--CHHHHHHHHhHHHhhhhhHHHHH
Q 037861 83 DLSAGSFAKVIDKAFGKPLNPPLDPYANSINYLIASYLNPYVGLTGYVGANPNLQ--DAVSQRLAAGLLGVKSGQDAIIR 160 (273)
Q Consensus 83 d~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvsAY~Gaap~l~--~~~~l~~AA~Il~VEA~Haa~IR 160 (273)
+++..++. .+|=| -+|...+|...-.=|...+..|.=....+. |+....++-.||+.|-.|..++.
T Consensus 92 ~ls~~~~~-----------~~p~d-~tdv~~mL~~~L~AEr~AI~~Y~eii~~~~~kDp~T~~l~~~IL~dE~eH~~dl~ 159 (186)
T PRK13456 92 DISACPDA-----------YLPEN-PTDPKEILKVLLEAERCAIRTYTEICDMTAGKDPRTYDLALAILQEEIEHEAWFS 159 (186)
T ss_pred hhhcCccc-----------cCCCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHH
Confidence 44333221 11222 246788999988889999999997777765 55578999999999999999999
Q ss_pred HHHHhhh
Q 037861 161 TLLYQKA 167 (273)
Q Consensus 161 ~lL~~~~ 167 (273)
.+|..++
T Consensus 160 ~lL~~~~ 166 (186)
T PRK13456 160 ELLGGGP 166 (186)
T ss_pred HHHhcCC
Confidence 9998754
No 10
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain. Ferritin-like N-terminal domain present in an uncharacterized family of proteins found in bacteria and archaea. These proteins also have a C-terminal CCC1-like transmembrane domain and are thought to be involved in iron and/or manganese transport. This domain has the conserved residues of a diiron center found in other ferritin-like proteins.
Probab=96.53 E-value=0.057 Score=44.13 Aligned_cols=121 Identities=17% Similarity=0.128 Sum_probs=85.6
Q ss_pred hhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc--CCCCCcccCCcchHH
Q 037861 13 LLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVK--GFPRPLLDLSAGSFA 90 (273)
Q Consensus 13 iLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg--a~~~P~id~s~~~F~ 90 (273)
.||=.+..|.-...||...+.- .-++.++.++.+++.+|..|..++++.++ +.+.|.-++. ..|.
T Consensus 2 ~~~~~~~~E~~~~~~Y~~la~~------------~~~~~~k~~f~~lA~~E~~H~~~~~~~~~~~~~~~~~~~~~-~~~~ 68 (125)
T cd01044 2 RLRKFQKDEITEAAIYRKLAKR------------EKDPENREILLKLAEDERRHAEFWKKFLGKRGVPPPRPKLK-IFFY 68 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------------cCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccHH-HHHH
Confidence 4667889999999999988521 24678999999999999999999999988 3333300111 1122
Q ss_pred HHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhhhhhccccccCCCHHHHHHHHhHHHhhhhhHHHHHHHHH
Q 037861 91 KVIDKAFGKPLNPPLDPYANSINYLIASYLNPYVGLTGYVGANPNLQDAVSQRLAAGLLGVKSGQDAIIRTLLY 164 (273)
Q Consensus 91 ~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvsAY~Gaap~l~~~~~l~~AA~Il~VEA~Haa~IR~lL~ 164 (273)
......+ +....+..+.-.|.-++.-|...... +.....|..-|-.|-..++.++.
T Consensus 69 ~~l~~~~------------g~~~~l~~~~~~E~~ai~~Y~~~~~~------~~~~~~Ii~dE~~H~~~L~~~~~ 124 (125)
T cd01044 69 KLLARIF------------GPTFVLKLLERGEERAIEKYDRLLEE------RPELKEIIADELEHEEVLIALLD 124 (125)
T ss_pred HHHHHHH------------hHHHHHHHHHHhHHhhHhhHHhhhhh------hHHHHHHHHHHHHHHHHHHHhhh
Confidence 2221111 22345566667899999999987655 55667899999999999988764
No 11
>cd01052 DPSL DPS-like protein, ferritin-like diiron-binding domain. DPSL (DPS-like). DPSL is a phylogenetically distinct class within the ferritin-like superfamily, and similar in many ways to the DPS (DNA Protecting protein under Starved conditions) proteins. Like DPS, these proteins are expressed in response to oxidative stress, form dodecameric cage-like particles, preferentially utilize hydrogen peroxide in the controlled oxidation of iron, and possess a short N-terminal extension implicated in stabilizing cellular DNA. This domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. These proteins are distantly related to bacterial ferritins which assemble 24 monomers, each of which have a four-helix bundle with a fifth shorter helix at the C terminus and a diiron (ferroxidase) center. Ferritins contain a center where oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical
Probab=96.18 E-value=0.14 Score=42.24 Aligned_cols=138 Identities=13% Similarity=0.100 Sum_probs=96.1
Q ss_pred hhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc-CCCCCcccCCcchH
Q 037861 11 VDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVK-GFPRPLLDLSAGSF 89 (273)
Q Consensus 11 ~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg-a~~~P~id~s~~~F 89 (273)
++.||-+|+.|+.-...|..-..- +.. .+ -..+...+++++.+|..|+..|-.-+. =..+|..... .|
T Consensus 8 ~~~Ln~~la~e~~~~~~y~~~~~~--~~g------~~-f~~l~~~~~~~~~ee~~Had~laEri~~lGg~p~~~~~--~~ 76 (148)
T cd01052 8 IELLNKAFADEWLAYYYYTILAKH--VKG------PE-GEGIKEELEEAAEEELNHAELLAERIYELGGTPPRDPK--DW 76 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HcC------Cc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChH--HH
Confidence 467999999999877777654321 000 11 156889999999999999999987765 2224544332 22
Q ss_pred HHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhhhhhccccccC--CCHHHHHHHHhHHHhhhhhHHHHHHHH
Q 037861 90 AKVIDKAFGKPLNPPLDPYANSINYLIASYLNPYVGLTGYVGANPNL--QDAVSQRLAAGLLGVKSGQDAIIRTLL 163 (273)
Q Consensus 90 ~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvsAY~Gaap~l--~~~~~l~~AA~Il~VEA~Haa~IR~lL 163 (273)
... .+..+..+-.-..+....+.....-|...+..|....... .|.......-.|+.-|-.|..+++++|
T Consensus 77 ~~~----~~~~~~~~~~~~~~~~~~l~~~~~~e~~~i~~~~~~~~~a~~~D~~t~~ll~~~l~de~~h~~~~~~~~ 148 (148)
T cd01052 77 YEI----SGCKCGYLPPDPPDVKGILKVNLKAERCAIKVYKELCDMTHGKDPVTYDLALAILNEEIEHEEDLEELL 148 (148)
T ss_pred HHH----hcccccCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 211 1111111111245778899999999999999999988765 677778889999999999999999875
No 12
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain. Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) best
Probab=96.02 E-value=0.23 Score=41.12 Aligned_cols=127 Identities=14% Similarity=0.036 Sum_probs=95.0
Q ss_pred hhhhhhHHHHHHHHHHHHHhccc---CCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc-CCCCCcccCCc
Q 037861 11 VDLLEFPLNLEYLEAEFFLFGSL---GHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVK-GFPRPLLDLSA 86 (273)
Q Consensus 11 ~diLNFALnLEyLEa~FY~~a~~---G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg-a~~~P~id~s~ 86 (273)
++.||-+++.||--...|.+... |.+ -+.+...+.+++.+|..|...|-.-+. -..+|.+.-.
T Consensus 7 ~~~Ln~~l~~E~~a~~~Y~~~a~~~~~~~------------~~~~~~~f~~~a~ee~~Ha~~lae~i~~lGg~p~~~~~- 73 (153)
T cd00907 7 IEALNKALTGELTAINQYFLHARMLEDWG------------LEKLAERFRKESIEEMKHADKLIERILFLEGLPNLQRL- 73 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCC------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcC-
Confidence 67899999999998888884432 222 156788999999999999999988764 1123433211
Q ss_pred chHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhhhhhcccccc---CCCHHHHHHHHhHHHhhhhhHHHHHHHH
Q 037861 87 GSFAKVIDKAFGKPLNPPLDPYANSINYLIASYLNPYVGLTGYVGANPN---LQDAVSQRLAAGLLGVKSGQDAIIRTLL 163 (273)
Q Consensus 87 ~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvsAY~Gaap~---l~~~~~l~~AA~Il~VEA~Haa~IR~lL 163 (273)
.|+ ....+....|..+.--|.--+..|.-.... ..|+......-.|+..|-.|..+++.++
T Consensus 74 ---------------~~~-~~~~~~~~~l~~~l~~E~~~~~~y~~~~~~A~~~~D~~t~~~l~~~~~~e~~h~~~l~~~l 137 (153)
T cd00907 74 ---------------GKL-RIGEDVPEMLENDLALEYEAIAALNEAIALCEEVGDYVSRDLLEEILEDEEEHIDWLETQL 137 (153)
T ss_pred ---------------CCC-CcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001 111366778888888888899999987543 6788899999999999999999999988
Q ss_pred Hhh
Q 037861 164 YQK 166 (273)
Q Consensus 164 ~~~ 166 (273)
...
T Consensus 138 ~~~ 140 (153)
T cd00907 138 DLI 140 (153)
T ss_pred HHH
Confidence 764
No 13
>PF13668 Ferritin_2: Ferritin-like domain
Probab=94.86 E-value=0.095 Score=43.02 Aligned_cols=56 Identities=16% Similarity=0.160 Sum_probs=48.9
Q ss_pred CCchhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc
Q 037861 8 QSDVDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVK 75 (273)
Q Consensus 8 ~~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg 75 (273)
.+|.++|.+|+.+|..-..+|..++. . .-++.++..+..|+..|..|...||..|+
T Consensus 81 ~~~~~~L~~A~~~E~~~~~~Y~g~~~-----~-------~~~~~~~~~~~~i~~~Ea~H~~~ir~ll~ 136 (137)
T PF13668_consen 81 TDDASFLRLAYTLEDVGVSAYKGAAP-----Q-------IEDPELKALAASIAGVEARHAAWIRNLLG 136 (137)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH-----H-------cCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 47899999999999999999998852 1 13688999999999999999999999875
No 14
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain. Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz
Probab=94.03 E-value=0.66 Score=40.00 Aligned_cols=99 Identities=15% Similarity=0.084 Sum_probs=80.3
Q ss_pred CCHHHHHHHHHHHHhHHHHHHHHHHhhc---C--CCCCcccCCcchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhcc
Q 037861 48 LNPFTNDVVLQFVWQEVGHLRAIKNTVK---G--FPRPLLDLSAGSFAKVIDKAFGKPLNPPLDPYANSINYLIASYLNP 122 (273)
Q Consensus 48 l~~~v~~~~~eia~~E~~HV~~L~~aLg---a--~~~P~id~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E 122 (273)
-++.+++.+.+|+.+|..|+..|-..+. + ...|- ++. -.++-.|...-|......|
T Consensus 51 ~~~~~~d~l~~ia~eEm~H~e~la~~I~~Lg~~~~g~pw---~~~----------------yv~~~~d~~~~L~~ni~aE 111 (156)
T cd01051 51 EDPKYRDLLLDIGTEELSHLEMVATLIAMLLKDSQGVPW---TAA----------------YIQSSGNLVADLRSNIAAE 111 (156)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcC---CCc----------------ccCCCCCHHHHHHHHHHHH
Confidence 3588999999999999999999988764 2 11222 210 1233456677888888889
Q ss_pred chhhhhhccccccCCCHHHHHHHHhHHHhhhhhHHHHHHHHHh
Q 037861 123 YVGLTGYVGANPNLQDAVSQRLAAGLLGVKSGQDAIIRTLLYQ 165 (273)
Q Consensus 123 ~VGvsAY~Gaap~l~~~~~l~~AA~Il~VEA~Haa~IR~lL~~ 165 (273)
.-+..-|.=.+..++|+.++...--|+.-|-.|.-.++.+|.+
T Consensus 112 ~~Ai~~Y~~l~~~~~Dp~v~~~l~~I~~rE~~H~~~f~~~l~~ 154 (156)
T cd01051 112 SRARLTYERLYEMTDDPGVKDTLSFLLVREIVHQNAFGKALES 154 (156)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999988764
No 15
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.
Probab=93.91 E-value=0.19 Score=39.70 Aligned_cols=55 Identities=18% Similarity=0.251 Sum_probs=47.4
Q ss_pred CCCchhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHh
Q 037861 7 PQSDVDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNT 73 (273)
Q Consensus 7 ~~~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~a 73 (273)
..++.++|..|+..|---.+||...+.. ..++.++.++++|..+|..|+..|+..
T Consensus 84 ~~~~~~~l~~a~~~E~~~~~~Y~~~~~~------------~~d~~~~~~~~~l~~~E~~H~~~l~~~ 138 (139)
T cd01045 84 LMDPLEALRLAIEIEKDAIEFYEELAEK------------AEDPEVKKLFEELAEEERGHLRLLEEL 138 (139)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHH------------cCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567899999999999999999988532 246899999999999999999999863
No 16
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain. This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=93.68 E-value=0.25 Score=41.48 Aligned_cols=55 Identities=11% Similarity=0.205 Sum_probs=47.0
Q ss_pred CCchhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhh
Q 037861 8 QSDVDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTV 74 (273)
Q Consensus 8 ~~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aL 74 (273)
.+..++|.+++.+|.=--+||...+- . ..++.+++++.+|..+|..|.+.|++.|
T Consensus 100 ~~~~~~L~~~~~~E~~ai~~Y~~~~~-----~-------~~d~~~r~ll~~I~~eE~~H~~~L~~~l 154 (154)
T cd07908 100 ESIKEMLKLDIASEKAAIAKYKRQAE-----T-------IKDPYIRALLNRIILDEKLHIKILEELL 154 (154)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHH-----H-------cCCHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 35577999999999999999999853 1 2478999999999999999999998754
No 17
>PRK10635 bacterioferritin; Provisional
Probab=92.56 E-value=4 Score=35.17 Aligned_cols=131 Identities=15% Similarity=0.072 Sum_probs=92.1
Q ss_pred hhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc-CCCCCcccCCcchH
Q 037861 11 VDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVK-GFPRPLLDLSAGSF 89 (273)
Q Consensus 11 ~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg-a~~~P~id~s~~~F 89 (273)
++.||-+|+.|+.-..=|..-+.= ++. -+++..-.. +..-+.+|..|...|..-+- =-..|.++-
T Consensus 8 i~~LN~~L~~El~Ai~QY~~ha~~--~~~------~G~~~la~~-~~~ea~eEm~HA~~l~eRIl~LgG~P~~~~----- 73 (158)
T PRK10635 8 INYLNKLLGNELVAINQYFLHARM--FKN------WGLMRLNDV-EYHESIDEMKHADKYIERILFLEGIPNLQD----- 73 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHc------CCcHHHHHH-HHHHHHHHHHHHHHHHHHHHHcCCCCCCCC-----
Confidence 688999999999887666443211 000 123222223 33337899999999887643 112333321
Q ss_pred HHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhhhhhcccccc---CCCHHHHHHHHhHHHhhhhhHHHHHHHHHhh
Q 037861 90 AKVIDKAFGKPLNPPLDPYANSINYLIASYLNPYVGLTGYVGANPN---LQDAVSQRLAAGLLGVKSGQDAIIRTLLYQK 166 (273)
Q Consensus 90 ~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvsAY~Gaap~---l~~~~~l~~AA~Il~VEA~Haa~IR~lL~~~ 166 (273)
+ ++..+-.|....|......|.-.+.-|.=++.. ..|...+.+...|+.-|-.|.-++.+.|...
T Consensus 74 -----------~-~~~~~g~~v~eml~~dl~~E~~ai~~y~e~i~~a~~~~D~~s~~ll~~iL~dEe~H~~~le~~l~~i 141 (158)
T PRK10635 74 -----------L-GKLNIGEDVEEMLRSDLRLELEGAKDLREAIAYADSVHDYVSRDMMIEILADEEGHIDWLETELDLI 141 (158)
T ss_pred -----------C-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 112233689999999999999999999988886 5688899999999999999999999998865
Q ss_pred h
Q 037861 167 A 167 (273)
Q Consensus 167 ~ 167 (273)
.
T Consensus 142 ~ 142 (158)
T PRK10635 142 G 142 (158)
T ss_pred H
Confidence 4
No 18
>TIGR02284 conserved hypothetical protein. Members of this protein family are found mostly in the Proteobacteria, although one member is found in the the marine planctomycete Pirellula sp. strain 1. The function is unknown.
Probab=92.23 E-value=4.2 Score=34.19 Aligned_cols=128 Identities=12% Similarity=0.072 Sum_probs=96.2
Q ss_pred hhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc-CCCCCcccCCcchH
Q 037861 11 VDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVK-GFPRPLLDLSAGSF 89 (273)
Q Consensus 11 ~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg-a~~~P~id~s~~~F 89 (273)
++.||=.+...|=--++|..++ +++ -++.++.++++++.+...|+.-|+..+. -...|.-+ ++|
T Consensus 2 i~~Ln~Lie~~~D~~~gY~~aa-----e~v-------~~~~lk~~f~~~~~~~~~~~~eL~~~v~~lGg~p~~~---gs~ 66 (139)
T TIGR02284 2 IHSLNDLIEISIDGKDGFEESA-----EEV-------KDPELATLFRRIAGEKSAIVSELQQVVASLGGKPEDH---GSM 66 (139)
T ss_pred hHHHHHHHHHcccHHHHHHHHH-----HHC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC---CcH
Confidence 4678888888888888999885 221 3689999999999999999999999886 12234321 234
Q ss_pred HHHHH-------HhcCCCCCCCCCCCCChHHHHHHHhhccchhhhhhccccccC-CCHHHHHHHHhHHHhhhhhHHHHHH
Q 037861 90 AKVID-------KAFGKPLNPPLDPYANSINYLIASYLNPYVGLTGYVGANPNL-QDAVSQRLAAGLLGVKSGQDAIIRT 161 (273)
Q Consensus 90 ~~~~~-------~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvsAY~Gaap~l-~~~~~l~~AA~Il~VEA~Haa~IR~ 161 (273)
...+. .+++. .++..+|....-=|+..+.+|.-+...- -.++++...-..+.-+-+|..+||.
T Consensus 67 ~g~lhr~w~~lks~~~~---------~~d~aiL~~~e~gEd~~~~~y~~aL~~~~l~~~~r~~l~~q~~~i~~~~d~i~~ 137 (139)
T TIGR02284 67 VGSLHQFWGKIRATLTP---------NDDYVVLEEAERGEDRAKKAYDETLADQDTPAAARDVALRQYPGVRACHDVIRA 137 (139)
T ss_pred HHHHHHHHHHHHHHHcC---------CChHHHHHHHHHhHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333 33332 4688899999999999999999998775 5777888888888888888877775
Q ss_pred H
Q 037861 162 L 162 (273)
Q Consensus 162 l 162 (273)
+
T Consensus 138 l 138 (139)
T TIGR02284 138 L 138 (139)
T ss_pred c
Confidence 4
No 19
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.
Probab=89.92 E-value=7.5 Score=31.82 Aligned_cols=126 Identities=10% Similarity=-0.082 Sum_probs=89.6
Q ss_pred chhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc-CCCCCcccCCcch
Q 037861 10 DVDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVK-GFPRPLLDLSAGS 88 (273)
Q Consensus 10 D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg-a~~~P~id~s~~~ 88 (273)
..+.||=|+.-|+-....|..-+.-. .. .++ +.+.+.+..++..|..|..-+.+.|. -...|. .
T Consensus 2 t~~~L~~a~~~E~~a~~~Y~~~a~~a--~~------~g~-~~~a~~f~~~a~eE~~HA~~~~~~l~~l~g~~~---~--- 66 (134)
T cd01041 2 TEKNLLAAFAGESQARNRYTYFAEKA--RK------EGY-EQIARLFRATAENEKEHAKGHFKLLKGLGGGDT---G--- 66 (134)
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHH--HH------CCH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc---C---
Confidence 35789999999998777776543210 00 122 56778899999999999999888876 222333 1
Q ss_pred HHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccch-hhhhhccccc---cCCCHHHHHHHHhHHHhhhhhHHHHHHHHH
Q 037861 89 FAKVIDKAFGKPLNPPLDPYANSINYLIASYLNPYV-GLTGYVGANP---NLQDAVSQRLAAGLLGVKSGQDAIIRTLLY 164 (273)
Q Consensus 89 F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~V-GvsAY~Gaap---~l~~~~~l~~AA~Il~VEA~Haa~IR~lL~ 164 (273)
|-.++.+...-|..+..-|.- ....|.-.+. .-.+..+....-.|+..|.+|..++..+|.
T Consensus 67 ---------------~~~~~~~~~~~l~~~~~~E~~e~~~~y~~~~~~A~~e~d~~~~~~f~~i~~~E~~H~~~l~~~l~ 131 (134)
T cd01041 67 ---------------PPIGIGDTLENLKAAIAGETYEYTEMYPEFAEVAEEEGFKEAARSFEAIAEAEKVHAERYKKALE 131 (134)
T ss_pred ---------------CCCCcchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 122456777778888888873 5566665544 456777888889999999999999998886
Q ss_pred h
Q 037861 165 Q 165 (273)
Q Consensus 165 ~ 165 (273)
.
T Consensus 132 ~ 132 (134)
T cd01041 132 N 132 (134)
T ss_pred c
Confidence 4
No 20
>PF14530 DUF4439: Domain of unknown function (DUF4439); PDB: 2IB0_B.
Probab=89.56 E-value=1.2 Score=37.61 Aligned_cols=117 Identities=16% Similarity=0.121 Sum_probs=79.5
Q ss_pred hhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc--C----CCCCcccCCcc
Q 037861 14 LEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVK--G----FPRPLLDLSAG 87 (273)
Q Consensus 14 LNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg--a----~~~P~id~s~~ 87 (273)
|+=+|.-|| .++||+|+-. +.+++..+..+.+...........|...|. + .+.|-|.+
T Consensus 2 L~~al~aE~-------aAvy~ygv~~------a~~~~~~r~~~~~~~~~HR~rRd~l~~~l~~~g~~~p~~~aaY~l--- 65 (131)
T PF14530_consen 2 LQAALAAEH-------AAVYGYGVAA------ARLDGDRRAAARAALAAHRARRDALAAALRAAGATPPPPEAAYQL--- 65 (131)
T ss_dssp HHHHHHHHH-------HHHHHHHHHH------HHS-GGGHHHHHHHHHHHHHHHHHHHHHHHHTT-------SS------
T ss_pred HHHHHHHHH-------HHHHHHHHHH------HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCC---
Confidence 456778888 2334443322 568888888888888888888888888887 1 22344544
Q ss_pred hHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhhhhhccccccCCCHHHHHHHHhHHHhhhhhHHHHHHHHH
Q 037861 88 SFAKVIDKAFGKPLNPPLDPYANSINYLIASYLNPYVGLTGYVGANPNLQDAVSQRLAAGLLGVKSGQDAIIRTLLY 164 (273)
Q Consensus 88 ~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvsAY~Gaap~l~~~~~l~~AA~Il~VEA~Haa~IR~lL~ 164 (273)
|| |-+|..+-+..+..+|.=-..+|.... .-++.+.+..+...|..-+.-..-.|..+.
T Consensus 66 ----------------P~-~v~d~~sa~~la~~lE~~~a~aw~~lv-~a~~~~~R~~av~aL~~aA~ra~~W~~~~g 124 (131)
T PF14530_consen 66 ----------------PF-PVTDPASAAALAAALEDDCAAAWRALV-AATDPALRRFAVDALTEAAVRAARWRAAAG 124 (131)
T ss_dssp ----------------SS----SHHHHHHHHHHHHHHHHHHHHHHH-H--SHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------CC-CCCCHHHHHHHHHHHHHHHHHHHHHHH-hcCChhHHHHHHHHHHHHHHHHHHhccccC
Confidence 34 357888888888999999999999999 888999999998888877766665555444
No 21
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin []. The physiological role of Rr has not been identified. The 3-D structure of Desulphovibrio vulgaris rubrerythrin has been solved []. The structure reveals a tetramer of two-domain subunits. In each monomer, the N-terminal 146 residues form a four-alpha-helix bundle containing the diiron-oxo site (centre I), and the C-terminal 45 residues form a rubredoxin-like FeS4 domain.; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1VJX_A 2FZF_A 3SID_B 3QHC_B 3QHB_B 4DI0_A 1J30_B 1YV1_A 1YUZ_B 1YUX_B ....
Probab=88.72 E-value=1.1 Score=35.33 Aligned_cols=52 Identities=15% Similarity=0.105 Sum_probs=44.1
Q ss_pred chhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHh
Q 037861 10 DVDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNT 73 (273)
Q Consensus 10 D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~a 73 (273)
...+|..|+..|---..||...+.. .-++.+++++.+|+.+|..|+..|+..
T Consensus 85 ~~~~l~~a~~~E~~~~~~Y~~~a~~------------~~~~~~~~~~~~l~~~E~~H~~~l~~l 136 (137)
T PF02915_consen 85 LEEALEMAIKEEKDAYEFYAELARK------------APDPEIRKLFEELAKEEKEHEDLLEKL 136 (137)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHH------------TTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------------CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5678888999999889999988532 247899999999999999999999864
No 22
>PF09968 DUF2202: Uncharacterized protein domain (DUF2202); InterPro: IPR019243 This domain, found in various hypothetical archaeal proteins, has no known function.; PDB: 3Q4O_A 3Q4Q_A 3Q4R_A 3Q4N_A.
Probab=88.58 E-value=15 Score=32.34 Aligned_cols=149 Identities=13% Similarity=0.120 Sum_probs=94.2
Q ss_pred hhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc--CCCCCcccCCcch
Q 037861 11 VDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVK--GFPRPLLDLSAGS 88 (273)
Q Consensus 11 ~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg--a~~~P~id~s~~~ 88 (273)
.+-|-|.+-=|+|....|..-.- .+-..++..|+.-|+.|..++...+. +++-|.-+.+.+.
T Consensus 2 ~~~Ll~m~EEEKlArDvY~~l~~----------------~~g~~~F~NIa~SEq~Hmdav~~Ll~kY~l~dP~~~~~~G~ 65 (162)
T PF09968_consen 2 IEGLLYMREEEKLARDVYLTLYE----------------KWGLPIFNNIARSEQRHMDAVKALLEKYGLEDPVEGDPVGV 65 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----------------HH--HHHHHHHHHHHHHHHHHHHHHHHTT---S-SS-STT-
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH----------------HcCChHhHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCCCC
Confidence 45688999999999999987632 23356799999999999999999998 8888887765445
Q ss_pred HH-----HHHHHh--cCCCCCCCCCCCCChHHHHHHHhhccchhhhhhccccccCCCHHHHHHHHhHHHhhhhhHHHHHH
Q 037861 89 FA-----KVIDKA--FGKPLNPPLDPYANSINYLIASYLNPYVGLTGYVGANPNLQDAVSQRLAAGLLGVKSGQDAIIRT 161 (273)
Q Consensus 89 F~-----~~~~~A--~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvsAY~Gaap~l~~~~~l~~AA~Il~VEA~Haa~IR~ 161 (273)
|+ ++-+.. -|. .+...-|.....+|.+-+.=+.-+...-.+++++.+=-.++.--..|-.....
T Consensus 66 f~~~~lq~LY~~Lv~~G~---------~S~~dAl~vga~iEe~dI~DL~~~l~~t~~~Di~~Vy~nL~~gS~NHLrAF~r 136 (162)
T PF09968_consen 66 FTNPELQELYNQLVEQGS---------KSLEDALKVGALIEELDIADLEEALARTDNEDIKTVYENLRRGSRNHLRAFVR 136 (162)
T ss_dssp -SSHHHHHHHHHHHHHHT---------S-HHHHHHHHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHhh---------hcHHHHHHHhHHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 111111 121 24556677788899999998888888888898887777777666678655555
Q ss_pred HHHhhhcccCCCCCccHHHHHHHH
Q 037861 162 LLYQKANEKVHPYGIPVAAFTNKI 185 (273)
Q Consensus 162 lL~~~~~~~v~Py~~tV~~~t~~I 185 (273)
.|-..+. .-.|--++-.+|-.-|
T Consensus 137 ~L~~~g~-~Y~pq~ls~~e~~~i~ 159 (162)
T PF09968_consen 137 QLERYGV-TYTPQYLSQEEFEAIL 159 (162)
T ss_dssp HHHHTT------SSS-HHHHHHHH
T ss_pred HHHHcCC-CCCCeecCHHHHHHHH
Confidence 5555543 4566667777765544
No 23
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub
Probab=88.13 E-value=2.4 Score=31.59 Aligned_cols=55 Identities=11% Similarity=0.038 Sum_probs=44.7
Q ss_pred CCchhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhh
Q 037861 8 QSDVDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTV 74 (273)
Q Consensus 8 ~~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aL 74 (273)
.++.++|..++..|--...+|...... .-++.+++++..+..+|..|+..++..+
T Consensus 76 ~~~~~~l~~~~~~E~~~~~~y~~~~~~------------~~d~~~~~~~~~~~~~E~~H~~~~~~~~ 130 (130)
T cd00657 76 DDPAEALRAALEVEARAIAAYRELIEQ------------ADDPELRRLLERILADEQRHAAWFRKLL 130 (130)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHh------------cCChHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 455788999999999888888876421 1268999999999999999999998753
No 24
>TIGR00754 bfr bacterioferritin. Bacterioferritin is a homomultimer most species. In Neisseria gonorrhoeae, Synechocystis PCC6803, Magnetospirillum magnetotacticum, and Pseudomonas aeruginosa, two types of subunit are found in a heteromultimeric complex, with each species having one member of each type. At present, both types of subunit are including in this single model.
Probab=85.22 E-value=21 Score=29.94 Aligned_cols=130 Identities=18% Similarity=0.052 Sum_probs=91.9
Q ss_pred hhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc-CCCCCcccCCcchH
Q 037861 11 VDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVK-GFPRPLLDLSAGSF 89 (273)
Q Consensus 11 ~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg-a~~~P~id~s~~~F 89 (273)
++.||=+|+-||.-...|..-+.-. .. -++ +.+...+...+.+|..|..-|-.-|- -..+|.+.
T Consensus 8 ~~~LN~~l~~E~~a~~~Y~~~~~~~--~~------~~~-~g~a~~~~~~a~EE~~Ha~~laeri~~lGg~p~~~------ 72 (157)
T TIGR00754 8 IQHLNKQLTNELTAINQYFLHARMQ--KN------WGL-KELADHEYHESIDEMKHADEIIERILFLEGLPNLQ------ 72 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--Hc------CCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC------
Confidence 5889999999996655555442211 00 112 34455677788899999999987654 11233321
Q ss_pred HHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhhhhhccccc---cCCCHHHHHHHHhHHHhhhhhHHHHHHHHHhh
Q 037861 90 AKVIDKAFGKPLNPPLDPYANSINYLIASYLNPYVGLTGYVGANP---NLQDAVSQRLAAGLLGVKSGQDAIIRTLLYQK 166 (273)
Q Consensus 90 ~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvsAY~Gaap---~l~~~~~l~~AA~Il~VEA~Haa~IR~lL~~~ 166 (273)
++. +..+-.+....+..+.-.|...+..|...+. ...|+....+.-.|+.-|-.|.-++|+.|...
T Consensus 73 ----------~i~-~~~~~~~~~e~l~~~l~~E~~~~~~~~e~i~~A~~~~D~~t~~ll~~~i~eee~h~~~l~~~l~~~ 141 (157)
T TIGR00754 73 ----------DLG-KLRIGETVREMLEADLALELDVLNRLKEAIAYAEEVRDYVSRDLLEEILEDEEEHIDWLETQLELI 141 (157)
T ss_pred ----------cCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011 1222357888899999999999999999854 67888899999999999999999999998754
No 25
>PF00210 Ferritin: Ferritin-like domain; InterPro: IPR008331 Ferritin is one of the major non-haem iron storage proteins in animals, plants, and microorganisms []. It consists of a mineral core of hydrated ferric oxide, and a multi-subunit protein shell that encloses the former and assures its solubility in an aqueous environment. In animals the protein is mainly cytoplasmic and there are generally two or more genes that encode closely related subunits - in mammals there are two subunits which are known as H(eavy) and L(ight). In plants ferritin is found in the chloroplast []. This entry represents the main structural domain of ferritin. The domain is also found in other ferritin-like proteins such as members of the DNA protection during starvation (DPS) family and bacterioferritins.; GO: 0008199 ferric iron binding, 0006879 cellular iron ion homeostasis; PDB: 1N1Q_C 4DYU_E 2YJJ_D 2YJK_B 2VXX_B 3FVB_A 2WLU_A 2XGW_A 2WLA_A 1Z4A_D ....
Probab=83.51 E-value=20 Score=28.23 Aligned_cols=132 Identities=15% Similarity=0.156 Sum_probs=94.4
Q ss_pred hhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc---CCCCCcccCCcc
Q 037861 11 VDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVK---GFPRPLLDLSAG 87 (273)
Q Consensus 11 ~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg---a~~~P~id~s~~ 87 (273)
++.||-++++|+--...|..-..=. . . . --+.+..++++.+.+|..|..-+..-+. +.|.....
T Consensus 1 i~~Ln~~l~~e~~~~~~y~~~~~~~--~--~----~-~~~~l~~~~~~~a~e~~~h~~~l~e~i~~lgg~p~~~~~---- 67 (142)
T PF00210_consen 1 IEALNEQLALELQASQQYLNMHWNF--D--G----P-NFPGLAKFFQDQAEEEREHADELAERILMLGGKPSGSPV---- 67 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--H--S----T-THHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-SSTSHH----
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHh--c--C----C-CchhhHHHhHHHHHHHHHHHHHHHHHHhcCCCCCCCcHH----
Confidence 4679999999998888887663210 0 0 0 1167889999999999999999987754 44443221
Q ss_pred hHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhhhhhccccccC---CCHHHHHHHHhHHHhhhhhHHHHHHHHH
Q 037861 88 SFAKVIDKAFGKPLNPPLDPYANSINYLIASYLNPYVGLTGYVGANPNL---QDAVSQRLAAGLLGVKSGQDAIIRTLLY 164 (273)
Q Consensus 88 ~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvsAY~Gaap~l---~~~~~l~~AA~Il~VEA~Haa~IR~lL~ 164 (273)
.+..+ + .|+ . +.+....|..+.-.|......|....... .|+......-.++.-|..|.-.++..|.
T Consensus 68 ~~~~~-------~-~~~-~-~~~~~~~l~~~l~~e~~~~~~~~~l~~~a~~~~D~~t~~~~~~~l~~~~~~~~~l~~~l~ 137 (142)
T PF00210_consen 68 EIPEI-------P-KPP-E-WTDPREALEAALEDEKEIIEEYRELIKLAEKEGDPETADFLDEFLEEEEKHIWMLQAHLT 137 (142)
T ss_dssp HHHHH-------H-SSS-S-SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hhhhh-------h-ccc-c-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 0 011 1 56888999999899999999998888777 6778888888899989999888888776
Q ss_pred h
Q 037861 165 Q 165 (273)
Q Consensus 165 ~ 165 (273)
.
T Consensus 138 ~ 138 (142)
T PF00210_consen 138 N 138 (142)
T ss_dssp H
T ss_pred H
Confidence 5
No 26
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain. Rubrerythrin-like domain, similar to rubrerythrin, a nonheme iron binding domain found in many air-sensitive bacteria and archaea, and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system. The rubrerythrin protein has two domains, a binuclear metal center located within a four-helix bundle of the rubrerythrin domain, and a rubredoxin domain. The Rubrerythrin-like domains in this CD are singular domains (no C-terminus rubredoxin domain) and are phylogenetically distinct from rubrerythrin domains of rubrerythrin-rubredoxin proteins.
Probab=82.92 E-value=19 Score=29.36 Aligned_cols=115 Identities=11% Similarity=0.047 Sum_probs=80.9
Q ss_pred hhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhcCCCCCcccCCcchHHH
Q 037861 12 DLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVKGFPRPLLDLSAGSFAK 91 (273)
Q Consensus 12 diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLga~~~P~id~s~~~F~~ 91 (273)
+-||=+++-|.-+...|..-+.-. +. -++ +.+.+.+..++..|..|...+.+.++.+|
T Consensus 4 ~~L~~a~~~E~~a~~~Y~~~a~~a--~~------eG~-~~~A~~f~~~a~eE~~HA~~~~~~l~~i~------------- 61 (123)
T cd01046 4 EDLEANFKGETTEVGMYLAMARVA--QR------EGY-PEVAEELKRIAMEEAEHAARFAELLGKVS------------- 61 (123)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHH--HH------CCC-HHHHHHHHHHHHHHHHHHHHHHHHHhcCc-------------
Confidence 568899999999998887653210 00 123 56889999999999999999999886554
Q ss_pred HHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhhhhhcccc---ccCCCHHHHHHHHhHHHhhhhhHHHHHHHHHh
Q 037861 92 VIDKAFGKPLNPPLDPYANSINYLIASYLNPYVGLTGYVGAN---PNLQDAVSQRLAAGLLGVKSGQDAIIRTLLYQ 165 (273)
Q Consensus 92 ~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvsAY~Gaa---p~l~~~~~l~~AA~Il~VEA~Haa~IR~lL~~ 165 (273)
.|...-|..+.--|.-.+..|...+ -.-.+.+....--.|+.+|..|.-+++.+|..
T Consensus 62 -----------------~~~~~~le~a~~~E~~~~~~~~~~~~~A~~egd~~~~~~~~~~~~~E~~H~~~~~~~l~~ 121 (123)
T cd01046 62 -----------------EDTKENLEMMLEGEAGANEGKKDAATEAKAEGLDEAHDFFHEAAKDEARHGKMLKGLLER 121 (123)
T ss_pred -----------------ccHHHHHHHHHHhHHHHHHhHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1223334444455554444454433 34457778888889999999999999988764
No 27
>cd01055 Nonheme_Ferritin nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.
Probab=82.76 E-value=26 Score=29.02 Aligned_cols=130 Identities=13% Similarity=0.047 Sum_probs=81.9
Q ss_pred hhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc-CCCCCcccCCcchH
Q 037861 11 VDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVK-GFPRPLLDLSAGSF 89 (273)
Q Consensus 11 ~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg-a~~~P~id~s~~~F 89 (273)
++.||=+++.|+--...|+.-+.-. +. .++ +.+...++..+.+|..|...+-+-|- -...|.+.--
T Consensus 5 ~~~Ln~~~~~El~A~~~Yl~~a~~~--~~------~~~-~~~a~~f~~~a~eE~~HA~~l~~~i~~~gg~~~~~~~---- 71 (156)
T cd01055 5 EKALNEQINLELYSSYLYLAMAAWF--DS------KGL-DGFANFFRVQAQEEREHAMKFFDYLNDRGGRVELPAI---- 71 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--hh------cCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeeCCCC----
Confidence 4679999999998888887653211 11 122 57788899999999999999887763 1112222100
Q ss_pred HHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhhhhhcccccc---CCCHHHHHHHHhHHHhhhhhHHHHHHHHHh
Q 037861 90 AKVIDKAFGKPLNPPLDPYANSINYLIASYLNPYVGLTGYVGANPN---LQDAVSQRLAAGLLGVKSGQDAIIRTLLYQ 165 (273)
Q Consensus 90 ~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvsAY~Gaap~---l~~~~~l~~AA~Il~VEA~Haa~IR~lL~~ 165 (273)
.++-..+.+....|..+.-.|.--+..|.-.... ..|+......-.|+..|..|...++.++..
T Consensus 72 ------------~~~~~~~~~~~~~l~~al~~E~~~~~~~~~l~~~A~~~~D~~~~~~l~~~l~~q~e~~~~~~~~l~~ 138 (156)
T cd01055 72 ------------EAPPSEFESLLEVFEAALEHEQKVTESINNLVDLALEEKDYATFNFLQWFVKEQVEEEALARDILDK 138 (156)
T ss_pred ------------CCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0011124577788888888888877777755444 345555555556666666666555555553
No 28
>cd01042 DMQH Demethoxyubiquinone hydroxylase, ferritin-like diiron-binding domain. Demethoxyubiquinone hydroxylases (DMQH) are members of the ferritin-like, diiron-carboxylate family which are present in eukaryotes (the CLK-1/CAT5 family) and prokaryotes (the Coq7 family). DMQH participates in one of the last steps of ubiquinone biosysnthesis and is responsible for DMQ hydroxylation, resulting in the formation of hydroxyubiquinone, a precursor of ubiquinone. CLK-1 is a mitochondrial inner membrane protein and Coq7 is a proposed interfacial integral membrane protein. Mutations in the Caenorhabditis elegans gene clk-1 affect biological timing and extend longevity. The conserved residues of a diiron center are present in this domain.
Probab=81.82 E-value=4.5 Score=35.48 Aligned_cols=106 Identities=16% Similarity=0.101 Sum_probs=74.0
Q ss_pred CCHHHHHHHHHHHHhHHHHHHHHHHhhc-CCCCCcccCCcchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhh
Q 037861 48 LNPFTNDVVLQFVWQEVGHLRAIKNTVK-GFPRPLLDLSAGSFAKVIDKAFGKPLNPPLDPYANSINYLIASYLNPYVGL 126 (273)
Q Consensus 48 l~~~v~~~~~eia~~E~~HV~~L~~aLg-a~~~P~id~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGv 126 (273)
-++.++..+++++.+|..|+....+.|. --.||.+-.. -| .++.-++|. .-....+...+..-...|.+-.
T Consensus 27 ~~~~~~~~l~~~~~~E~~Hl~~f~~~i~~~~~rps~l~P--lW-~~~gf~lG~-----~tal~G~~~a~~~~~avE~~V~ 98 (165)
T cd01042 27 RDPAVRPLIKEMLDEEKDHLAWFEELLPELGVRPSLLLP--LW-YVAGFALGA-----LTALLGKKAAMACTAAVETVVE 98 (165)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHH--HH-HHHHHHHHH-----HHHhhChHHHHHHHHHHHHHHH
Confidence 3589999999999999999999999987 4456654321 11 111111110 0001234445666667788888
Q ss_pred hhhccccccCC---CHHHHHHHHhHHHhhhhhHHHHHH
Q 037861 127 TGYVGANPNLQ---DAVSQRLAAGLLGVKSGQDAIIRT 161 (273)
Q Consensus 127 sAY~Gaap~l~---~~~~l~~AA~Il~VEA~Haa~IR~ 161 (273)
.=|...+..|. ++.++.....+.--|..|.-.-..
T Consensus 99 ~Hy~~ql~~L~~~~d~~l~~~l~~~r~DE~~H~d~A~~ 136 (165)
T cd01042 99 EHYNDQLRELPAQPDKELRAIIEQFRDDELEHADIAEE 136 (165)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999998887 888999999999999999865443
No 29
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=79.71 E-value=4.9 Score=44.08 Aligned_cols=56 Identities=11% Similarity=0.162 Sum_probs=46.9
Q ss_pred CCchhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHH-HHHHHHHHHHhHHHHHHHHHHhhc
Q 037861 8 QSDVDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPF-TNDVVLQFVWQEVGHLRAIKNTVK 75 (273)
Q Consensus 8 ~~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~-v~~~~~eia~~E~~HV~~L~~aLg 75 (273)
.++.++|.+|+-.|.=--+||...+-. --++. .++++.+|+..|..|++.|++.+.
T Consensus 940 ~~~~~al~lAm~~Ekdai~fY~~la~~------------~~d~e~~k~l~~~LA~EEk~Hl~~L~~~~d 996 (1006)
T PRK12775 940 DDPGNLFRIAIEFERRAVKFFKERVAE------------TPDGSVERQLYKELAAEEREHVALLTTEFE 996 (1006)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhh------------CCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999998521 12444 699999999999999999998875
No 30
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.
Probab=78.77 E-value=5.3 Score=32.73 Aligned_cols=58 Identities=12% Similarity=-0.038 Sum_probs=45.1
Q ss_pred CchhhhhhHHHHHHHHH-HHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc
Q 037861 9 SDVDLLEFPLNLEYLEA-EFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVK 75 (273)
Q Consensus 9 ~D~diLNFALnLEyLEa-~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg 75 (273)
+..++|..++..|.-|+ +.|...+-- .. ..-+..+.+.+++|..+|..|++.|+..|+
T Consensus 73 ~~~~~l~~~~~~E~~e~~~~y~~~~~~---A~------~e~d~~~~~~f~~i~~~E~~H~~~l~~~l~ 131 (134)
T cd01041 73 DTLENLKAAIAGETYEYTEMYPEFAEV---AE------EEGFKEAARSFEAIAEAEKVHAERYKKALE 131 (134)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHH---HH------HcCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44689999999999876 777665311 00 234678999999999999999999999875
No 31
>COG2406 Protein distantly related to bacterial ferritins [General function prediction only]
Probab=78.77 E-value=39 Score=29.73 Aligned_cols=133 Identities=17% Similarity=0.176 Sum_probs=87.3
Q ss_pred hhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHH-HHHHHHHHHHhHHHHHHHHHHhhc----CCCCC---cccC
Q 037861 13 LLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPF-TNDVVLQFVWQEVGHLRAIKNTVK----GFPRP---LLDL 84 (273)
Q Consensus 13 iLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~-v~~~~~eia~~E~~HV~~L~~aLg----a~~~P---~id~ 84 (273)
.|=-|-.-|+.-.-||..-.+- + -++... .+.++++-...-..|.+.|..-|- ..||- ..|+
T Consensus 21 ~Llka~AaE~tt~YYYtilr~~--l--------~Gle~e~~keiae~Ar~E~r~H~e~i~~Ri~elg~~~Prd~~~l~dI 90 (172)
T COG2406 21 LLLKAAAAEWTTYYYYTILRYA--L--------KGLEGEGIKEIAEEAREEDRKHFELIAPRIYELGGDLPRDMKKLHDI 90 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--H--------hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHhh
Confidence 3444556677766666654322 1 235554 445555555555679999987765 33332 2344
Q ss_pred CcchHHHHHHHhcCCCCC-CCCCCCCChHHHHHHHhhccchhhhhhccccccCCC--HHHHHHHHhHHHhhhhhHHHHHH
Q 037861 85 SAGSFAKVIDKAFGKPLN-PPLDPYANSINYLIASYLNPYVGLTGYVGANPNLQD--AVSQRLAAGLLGVKSGQDAIIRT 161 (273)
Q Consensus 85 s~~~F~~~~~~A~g~~l~-p~FdPy~n~~~FL~~A~~~E~VGvsAY~Gaap~l~~--~~~l~~AA~Il~VEA~Haa~IR~ 161 (273)
|++ +-. =|-||| |...+|.++---|.-.+.+|+-.-.+-.+ +..-.+|-.||--|-.|.+|+-.
T Consensus 91 SgC------------~~a~LPedp~-D~~~~l~vlv~AE~CAir~ykeic~~T~GkDprTyeLa~~IL~eEi~hr~~~~~ 157 (172)
T COG2406 91 SGC------------KPAYLPEDPY-DIDEILAVLVKAERCAIRAYKEICNLTAGKDPRTYELAEAILREEIEHRTWFLE 157 (172)
T ss_pred cCC------------CCCCCCCCcc-CHHHHHHHHHHHHHHHHHHHHHHHccccCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 432 211 134554 56678888888899999999977666544 44678999999999999999999
Q ss_pred HHHhhhc
Q 037861 162 LLYQKAN 168 (273)
Q Consensus 162 lL~~~~~ 168 (273)
+|++.+.
T Consensus 158 ll~~~~s 164 (172)
T COG2406 158 LLGKEPS 164 (172)
T ss_pred HhccCch
Confidence 9998654
No 32
>cd01048 Ferritin_like_AB2 Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria, subgroup 2 (Ferritin_like_AB2). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. The conserved residues of a diiron center are present within the putative active site.
Probab=73.01 E-value=13 Score=31.01 Aligned_cols=56 Identities=21% Similarity=0.064 Sum_probs=47.7
Q ss_pred CCCCCchhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHH
Q 037861 5 KLPQSDVDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKN 72 (273)
Q Consensus 5 ~~~~~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~ 72 (273)
....+|.+.|+.|...|-.-.+||...+... -++.++.++..++.-|..|.+...+
T Consensus 78 ~~~~s~~~al~~g~~~E~~~i~~ye~~~~~~------------~d~d~k~v~~~L~~~e~~H~~~f~~ 133 (135)
T cd01048 78 QGPKSLQDALEVGVLIEELDIADYDRLLERT------------QNPDIRDVFENLQAASRNHHLPFFR 133 (135)
T ss_pred hccccHHHHHHHHHHHHHHHHHHHHHHHHhc------------ccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567899999999999999999999985322 4689999999999999999886544
No 33
>PF03232 COQ7: Ubiquinone biosynthesis protein COQ7; InterPro: IPR011566 Coq7 (also known as Clk-1) is a di-iron carboxylate protein occuring in both prokaryotes and eukaryotes that is essential for ubiquinone biosynthesis [, ]. It has been implicated in the aging process as mutations in the Caenorhabditis elegans gene lead to increased lifespan []. Coq7 is a membrane-bound protein that functions as a monooxygenase to hydroxylate demethoxyubiquinone (2-methoxy-5-methyl-6-polyprenyl-1,4-benzoquinone) in the penultimate step of ubiquinone biosynthesis []. Biochemical studies indicate that NADH can serve directly as a reductant for catalytic activation of dioxygen and substrate oxidation by the enzyme, with no requirement for an additional reductase protein component []. This direct reaction with NADH is so far unique amongst members of the di-iron carboxylate protein family. This entry is specific for the bacterial Coq7 proteins.; GO: 0006744 ubiquinone biosynthetic process, 0055114 oxidation-reduction process
Probab=70.69 E-value=41 Score=29.63 Aligned_cols=34 Identities=21% Similarity=0.200 Sum_probs=29.2
Q ss_pred CHHHHHHHHHHHHhHHHHHHHHHHhhc-CCCCCcc
Q 037861 49 NPFTNDVVLQFVWQEVGHLRAIKNTVK-GFPRPLL 82 (273)
Q Consensus 49 ~~~v~~~~~eia~~E~~HV~~L~~aLg-a~~~P~i 82 (273)
++.++..++++..+|..|+...++.|. --.||.+
T Consensus 31 ~~~~~~~l~~~~~~E~~Hl~~f~~~l~~~~~RpS~ 65 (172)
T PF03232_consen 31 DPELRPFLKEMAEEEKDHLAWFEQLLPELRVRPSL 65 (172)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhHHcCCCCcH
Confidence 799999999999999999999999987 3336654
No 34
>PRK13456 DNA protection protein DPS; Provisional
Probab=67.77 E-value=22 Score=31.93 Aligned_cols=58 Identities=22% Similarity=0.201 Sum_probs=48.3
Q ss_pred hhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhcCCC
Q 037861 11 VDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVKGFP 78 (273)
Q Consensus 11 ~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLga~~ 78 (273)
.++|+=.|..|.-.-+-|..-.-- +...||.+++++.+|-.+|..|.+-+++.|++-|
T Consensus 109 ~~mL~~~L~AEr~AI~~Y~eii~~----------~~~kDp~T~~l~~~IL~dE~eH~~dl~~lL~~~~ 166 (186)
T PRK13456 109 KEILKVLLEAERCAIRTYTEICDM----------TAGKDPRTYDLALAILQEEIEHEAWFSELLGGGP 166 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------HhcCCccHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 678999999999888888876421 1357999999999999999999999999998433
No 35
>PF11272 DUF3072: Protein of unknown function (DUF3072); InterPro: IPR021425 This bacterial family of proteins has no known function.
Probab=65.83 E-value=16 Score=26.88 Aligned_cols=39 Identities=18% Similarity=0.349 Sum_probs=31.9
Q ss_pred hhhHHHHHHHHHhhhcccCCCCCccHHHHHHHHHHHHhhcC
Q 037861 153 SGQDAIIRTLLYQKANEKVHPYGIPVAAFTNKISQMRNNLG 193 (273)
Q Consensus 153 A~Haa~IR~lL~~~~~~~v~Py~~tV~~~t~~IS~lR~~L~ 193 (273)
+.|++.+|+|.-+.++. + |-++|.+|...+|-.||.+.+
T Consensus 18 ~aQ~syL~tL~e~Age~-~-~~~LtkaeAs~rId~L~~~~g 56 (57)
T PF11272_consen 18 GAQASYLKTLSEEAGEP-F-PDDLTKAEASERIDELQAQTG 56 (57)
T ss_pred HHHHHHHHHHHHHhCCC-C-CCcccHHHHHHHHHHHHHHhC
Confidence 56888999988887733 2 338999999999999999876
No 36
>PRK10635 bacterioferritin; Provisional
Probab=64.27 E-value=26 Score=30.21 Aligned_cols=58 Identities=16% Similarity=0.169 Sum_probs=47.9
Q ss_pred CchhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc
Q 037861 9 SDVDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVK 75 (273)
Q Consensus 9 ~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg 75 (273)
+=.++|...|.+|.=-.+-|..++.=. . ..-|...++++.+|-.+|..|...|++.|+
T Consensus 82 ~v~eml~~dl~~E~~ai~~y~e~i~~a---~------~~~D~~s~~ll~~iL~dEe~H~~~le~~l~ 139 (158)
T PRK10635 82 DVEEMLRSDLRLELEGAKDLREAIAYA---D------SVHDYVSRDMMIEILADEEGHIDWLETELD 139 (158)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH---H------HcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347899999999998888998885210 0 236889999999999999999999999875
No 37
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain. Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz
Probab=62.78 E-value=33 Score=29.48 Aligned_cols=54 Identities=15% Similarity=0.007 Sum_probs=45.3
Q ss_pred chhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc
Q 037861 10 DVDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVK 75 (273)
Q Consensus 10 D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg 75 (273)
-+.+|...+..|.--..-|.+-.. . --||.+++++..|..+|..|...++++|.
T Consensus 100 ~~~~L~~ni~aE~~Ai~~Y~~l~~-----~-------~~Dp~v~~~l~~I~~rE~~H~~~f~~~l~ 153 (156)
T cd01051 100 LVADLRSNIAAESRARLTYERLYE-----M-------TDDPGVKDTLSFLLVREIVHQNAFGKALE 153 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----H-------cCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367788999999988888887742 1 12799999999999999999999999875
No 38
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain. Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) best
Probab=61.93 E-value=25 Score=28.86 Aligned_cols=58 Identities=17% Similarity=0.154 Sum_probs=47.4
Q ss_pred CchhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc
Q 037861 9 SDVDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVK 75 (273)
Q Consensus 9 ~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg 75 (273)
+..++|+.++..|.--.+-|....- +.. ..-|+.+.+++..|..+|..|..+|++.++
T Consensus 81 ~~~~~l~~~l~~E~~~~~~y~~~~~---~A~------~~~D~~t~~~l~~~~~~e~~h~~~l~~~l~ 138 (153)
T cd00907 81 DVPEMLENDLALEYEAIAALNEAIA---LCE------EVGDYVSRDLLEEILEDEEEHIDWLETQLD 138 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH---HHH------HcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688999999999988888887631 000 235789999999999999999999999876
No 39
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=59.79 E-value=13 Score=36.43 Aligned_cols=55 Identities=13% Similarity=0.182 Sum_probs=50.4
Q ss_pred HHHHHHHhhccchhhhhhccccccCC--CHHHHHHHHhHHHhhhhhHHHHHHHHHhh
Q 037861 112 INYLIASYLNPYVGLTGYVGANPNLQ--DAVSQRLAAGLLGVKSGQDAIIRTLLYQK 166 (273)
Q Consensus 112 ~~FL~~A~~~E~VGvsAY~Gaap~l~--~~~~l~~AA~Il~VEA~Haa~IR~lL~~~ 166 (273)
.+||.-|-+=|--|---|+-....|+ ||.+.+.-.=+.-.||||++.|+-.|..-
T Consensus 85 idFLerSctaEFSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~df 141 (355)
T PRK13654 85 IDFLERSCTAEFSGFLLYKELSRRLKDRNPLLAELFQLMARDEARHAGFLNKAMKDF 141 (355)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHhccccCcHHHHHHHHHhhhHHHHhhhHHHHHHHc
Confidence 57999999999999999999999998 99999999999999999999999888763
No 40
>COG1633 Uncharacterized conserved protein [Function unknown]
Probab=59.68 E-value=31 Score=30.37 Aligned_cols=57 Identities=18% Similarity=0.141 Sum_probs=47.4
Q ss_pred CCCchhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc
Q 037861 7 PQSDVDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVK 75 (273)
Q Consensus 7 ~~~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg 75 (273)
..+..+.|.+|.-.|.---+||...+ +. ..+..++.++++++.||.+|++.|++-+.
T Consensus 111 ~~~~~~~I~~a~~~E~~t~~~Y~~~~-----~~-------~~~~~~~~~~~~~a~~E~~H~~~l~~~~~ 167 (176)
T COG1633 111 SVSYLEAIEAAMEAEKDTIEFYEELL-----DE-------LVNEEAKKLFKTIADDEKGHASGLLSLYN 167 (176)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHH-----HH-------ccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557889999999999999999884 32 35678889999999999999999998664
No 41
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=58.86 E-value=13 Score=36.00 Aligned_cols=55 Identities=15% Similarity=0.193 Sum_probs=49.7
Q ss_pred HHHHHHHhhccchhhhhhccccccCCC--HHHHHHHHhHHHhhhhhHHHHHHHHHhh
Q 037861 112 INYLIASYLNPYVGLTGYVGANPNLQD--AVSQRLAAGLLGVKSGQDAIIRTLLYQK 166 (273)
Q Consensus 112 ~~FL~~A~~~E~VGvsAY~Gaap~l~~--~~~l~~AA~Il~VEA~Haa~IR~lL~~~ 166 (273)
.+||.-|-+=|--|---|+-....++| |.+.+.-.=+.-.||||++.|+-.+..-
T Consensus 65 idFLerSctaEFSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~df 121 (323)
T cd01047 65 LEFLERSCTSEFSGFLLYKELGRRLKNTNPVVAELFRLMARDEARHAGFLNKALSDF 121 (323)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHHcccCCcHHHHHHHHHhhhHHHHhhhHHHHHHHc
Confidence 579999999999999999999999966 9999998889999999999999887763
No 42
>PF09537 DUF2383: Domain of unknown function (DUF2383); InterPro: IPR019052 This entry represents a functionally uncharacterised ferritin like domain.; PDB: 3FSE_B.
Probab=57.52 E-value=43 Score=26.28 Aligned_cols=104 Identities=16% Similarity=0.164 Sum_probs=50.4
Q ss_pred hhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc-CCCCCcccCCcchH
Q 037861 11 VDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVK-GFPRPLLDLSAGSF 89 (273)
Q Consensus 11 ~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg-a~~~P~id~s~~~F 89 (273)
++.||=.|..++--.+.|..++ ++. -++..+.++++++.+...|+..|+..|. -...|.-+ +++
T Consensus 3 i~~Ln~Ll~~~~d~~~~Y~~a~-----~~~-------~~~~lk~~f~~~~~~~~~~~~~L~~~i~~~Gg~p~~~---gs~ 67 (111)
T PF09537_consen 3 IEALNDLLKGLHDGIEGYEKAA-----EKA-------EDPELKSLFQEFAQERQQHAEELQAEIQELGGEPEES---GSF 67 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-----HH---------SHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--H-------HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcc---cCH
Confidence 6789999999999999999994 331 3699999999999999999999999987 22344332 133
Q ss_pred HHHHHHhcCCCCCCCCCCCCChH-HHHHHHhhccchhhhhhccc
Q 037861 90 AKVIDKAFGKPLNPPLDPYANSI-NYLIASYLNPYVGLTGYVGA 132 (273)
Q Consensus 90 ~~~~~~A~g~~l~p~FdPy~n~~-~FL~~A~~~E~VGvsAY~Ga 132 (273)
...+..+.-. +...|. .++. .+|..+.-=|+.++.+|.=+
T Consensus 68 ~g~~~r~~~~-ik~~~~--~~d~~aiL~~~~~gE~~~~~~y~~a 108 (111)
T PF09537_consen 68 KGALHRAWMD-IKSALG--GDDDEAILEECERGEDMALEAYEDA 108 (111)
T ss_dssp CHHHH-TTTH-HHHS-------H---------------------
T ss_pred HHHHHHHHHH-HHHHhc--CCCccchhhhhhhhhhhhhhhcccc
Confidence 3333333100 000010 1333 37777777788888887644
No 43
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain. Rubrerythrin-like domain, similar to rubrerythrin, a nonheme iron binding domain found in many air-sensitive bacteria and archaea, and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system. The rubrerythrin protein has two domains, a binuclear metal center located within a four-helix bundle of the rubrerythrin domain, and a rubredoxin domain. The Rubrerythrin-like domains in this CD are singular domains (no C-terminus rubredoxin domain) and are phylogenetically distinct from rubrerythrin domains of rubrerythrin-rubredoxin proteins.
Probab=54.04 E-value=44 Score=27.21 Aligned_cols=59 Identities=19% Similarity=0.017 Sum_probs=45.5
Q ss_pred CCchhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc
Q 037861 8 QSDVDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVK 75 (273)
Q Consensus 8 ~~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg 75 (273)
.+-.++|+-++..|.-+..-|...+-- .. .--+..+.+.+..++.+|..|++.++.+|.
T Consensus 62 ~~~~~~le~a~~~E~~~~~~~~~~~~~---A~------~egd~~~~~~~~~~~~~E~~H~~~~~~~l~ 120 (123)
T cd01046 62 EDTKENLEMMLEGEAGANEGKKDAATE---AK------AEGLDEAHDFFHEAAKDEARHGKMLKGLLE 120 (123)
T ss_pred ccHHHHHHHHHHhHHHHHHhHHHHHHH---HH------HcCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345789999999999998887644210 00 223678999999999999999999998874
No 44
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=52.69 E-value=18 Score=35.34 Aligned_cols=55 Identities=11% Similarity=0.126 Sum_probs=49.4
Q ss_pred HHHHHHHhhccchhhhhhccccccCCC--HHHHHHHHhHHHhhhhhHHHHHHHHHhh
Q 037861 112 INYLIASYLNPYVGLTGYVGANPNLQD--AVSQRLAAGLLGVKSGQDAIIRTLLYQK 166 (273)
Q Consensus 112 ~~FL~~A~~~E~VGvsAY~Gaap~l~~--~~~l~~AA~Il~VEA~Haa~IR~lL~~~ 166 (273)
.+||.-|-+=|--|---|+-....|+| |.+.+.-.=+.-.||||++.|+-.|..-
T Consensus 81 idFLerScTaEFSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~df 137 (351)
T CHL00185 81 VEFLERSCTAEFSGFLLYKELSRKLKDKNPLLAEGFLLMSRDEARHAGFLNKAMSDF 137 (351)
T ss_pred HHHHHHHhhhhhhhhHHHHHHHHHhccCCcHHHHHHHHHhhhhHHHhhhHHHHHHHc
Confidence 579999999999999999999999955 8888888888899999999999887763
No 45
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=52.05 E-value=17 Score=35.53 Aligned_cols=55 Identities=15% Similarity=0.178 Sum_probs=49.3
Q ss_pred HHHHHHHhhccchhhhhhccccccCCC--HHHHHHHHhHHHhhhhhHHHHHHHHHhh
Q 037861 112 INYLIASYLNPYVGLTGYVGANPNLQD--AVSQRLAAGLLGVKSGQDAIIRTLLYQK 166 (273)
Q Consensus 112 ~~FL~~A~~~E~VGvsAY~Gaap~l~~--~~~l~~AA~Il~VEA~Haa~IR~lL~~~ 166 (273)
.+||.-|-+=|--|---|+-....|+| |.+.+.-.=+.-.||||++.|+-.|..-
T Consensus 81 idFLerSctaEFSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~Df 137 (357)
T PLN02508 81 IEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFTLMSRDEARHAGFLNKALSDF 137 (357)
T ss_pred HHHHHhhhhhhcccchHHHHHHHhcccCChHHHHHHHHhCchhHHHHhHHHHHHHHc
Confidence 579999999999999999999999955 9999998888889999999999887763
No 46
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=51.68 E-value=17 Score=35.30 Aligned_cols=55 Identities=15% Similarity=0.150 Sum_probs=48.3
Q ss_pred HHHHHHHhhccchhhhhhccccccCCCHH--HHHHHHhHHHhhhhhHHHHHHHHHhh
Q 037861 112 INYLIASYLNPYVGLTGYVGANPNLQDAV--SQRLAAGLLGVKSGQDAIIRTLLYQK 166 (273)
Q Consensus 112 ~~FL~~A~~~E~VGvsAY~Gaap~l~~~~--~l~~AA~Il~VEA~Haa~IR~lL~~~ 166 (273)
.+||.-|-+=|--|---|+-....++|++ +.+.-.=+.-.||||++.|+-.|..-
T Consensus 75 idFLerScTaEFSGflLYKEl~rrlk~~~P~lae~F~~MaRDEARHAGFlNkam~df 131 (337)
T TIGR02029 75 IEFLERSCTSEFSGFLLYKELSRRLKNRDPVVAELFQLMARDEARHAGFLNKALGDF 131 (337)
T ss_pred HHHHHHHhhhhhhhhHHHHHHHHhcCCCChHHHHHHHHHhhhhHHHhhhHHHHHHHc
Confidence 57999999999999999999999996555 88888888889999999999888763
No 47
>cd01055 Nonheme_Ferritin nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.
Probab=51.25 E-value=44 Score=27.61 Aligned_cols=58 Identities=17% Similarity=0.042 Sum_probs=46.7
Q ss_pred CchhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc
Q 037861 9 SDVDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVK 75 (273)
Q Consensus 9 ~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg 75 (273)
+-.++|.-+|++|.--.+-|..... +.. ..-|+.+.+++++|..+|+.|++.+++.++
T Consensus 80 ~~~~~l~~al~~E~~~~~~~~~l~~---~A~------~~~D~~~~~~l~~~l~~q~e~~~~~~~~l~ 137 (156)
T cd01055 80 SLLEVFEAALEHEQKVTESINNLVD---LAL------EEKDYATFNFLQWFVKEQVEEEALARDILD 137 (156)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH---HHH------HcCCHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468999999999988888877632 100 235789999999999999999999999887
No 48
>PF04305 DUF455: Protein of unknown function (DUF455); InterPro: IPR007402 This is a family of uncharacterised proteins.
Probab=50.25 E-value=28 Score=32.54 Aligned_cols=60 Identities=15% Similarity=0.213 Sum_probs=41.5
Q ss_pred cCCCHHHHHHHHHHHHhHHHHHHHHHHhhc-CCCCCcccCCcchHHHHHHHhcCCCCCCCCC
Q 037861 46 ANLNPFTNDVVLQFVWQEVGHLRAIKNTVK-GFPRPLLDLSAGSFAKVIDKAFGKPLNPPLD 106 (273)
Q Consensus 46 a~l~~~v~~~~~eia~~E~~HV~~L~~aLg-a~~~P~id~s~~~F~~~~~~A~g~~l~p~Fd 106 (273)
..=|.....+++.|..+|++||++=.+=+. -..+...|-. ..|..+++.-+...+.||||
T Consensus 177 ~~gD~~sa~iL~~I~~DEi~HV~~G~rWf~~~c~~~~~~p~-~~f~~lv~~~~~~~~k~pfN 237 (253)
T PF04305_consen 177 SAGDEESAAILEIILRDEIGHVAIGNRWFRYLCEQRGLDPW-ETFRELVRQYFRGKLKGPFN 237 (253)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHH-HHHHHHHHHhCCCCCCCCCC
Confidence 334668889999999999999987544443 2223333321 36888887777788888886
No 49
>PF00210 Ferritin: Ferritin-like domain; InterPro: IPR008331 Ferritin is one of the major non-haem iron storage proteins in animals, plants, and microorganisms []. It consists of a mineral core of hydrated ferric oxide, and a multi-subunit protein shell that encloses the former and assures its solubility in an aqueous environment. In animals the protein is mainly cytoplasmic and there are generally two or more genes that encode closely related subunits - in mammals there are two subunits which are known as H(eavy) and L(ight). In plants ferritin is found in the chloroplast []. This entry represents the main structural domain of ferritin. The domain is also found in other ferritin-like proteins such as members of the DNA protection during starvation (DPS) family and bacterioferritins.; GO: 0008199 ferric iron binding, 0006879 cellular iron ion homeostasis; PDB: 1N1Q_C 4DYU_E 2YJJ_D 2YJK_B 2VXX_B 3FVB_A 2WLU_A 2XGW_A 2WLA_A 1Z4A_D ....
Probab=47.45 E-value=50 Score=25.91 Aligned_cols=58 Identities=19% Similarity=0.099 Sum_probs=47.0
Q ss_pred CchhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc
Q 037861 9 SDVDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVK 75 (273)
Q Consensus 9 ~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg 75 (273)
+-.++|.-+|..|.--.+.|..... ... ..-|+.+.+++.++-.+|..|++.|++.|+
T Consensus 80 ~~~~~l~~~l~~e~~~~~~~~~l~~-----~a~----~~~D~~t~~~~~~~l~~~~~~~~~l~~~l~ 137 (142)
T PF00210_consen 80 DPREALEAALEDEKEIIEEYRELIK-----LAE----KEGDPETADFLDEFLEEEEKHIWMLQAHLT 137 (142)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHH-----HHH----HTTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH-----HHH----hcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999998887742 100 125899999999999999999999998774
No 50
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain. Ferritin-like N-terminal domain present in an uncharacterized family of proteins found in bacteria and archaea. These proteins also have a C-terminal CCC1-like transmembrane domain and are thought to be involved in iron and/or manganese transport. This domain has the conserved residues of a diiron center found in other ferritin-like proteins.
Probab=45.43 E-value=44 Score=27.01 Aligned_cols=55 Identities=9% Similarity=0.018 Sum_probs=48.6
Q ss_pred HHHHhhccchhhhhhccccccCCCHHHHHHHHhHHHhhhhhHHHHHHHHHhhhcc
Q 037861 115 LIASYLNPYVGLTGYVGANPNLQDAVSQRLAAGLLGVKSGQDAIIRTLLYQKANE 169 (273)
Q Consensus 115 L~~A~~~E~VGvsAY~Gaap~l~~~~~l~~AA~Il~VEA~Haa~IR~lL~~~~~~ 169 (273)
+...+..|.-|..-|.-.+...+|+..+++--.|...|-.|..+++.++.+....
T Consensus 3 ~~~~~~~E~~~~~~Y~~la~~~~~~~~k~~f~~lA~~E~~H~~~~~~~~~~~~~~ 57 (125)
T cd01044 3 LRKFQKDEITEAAIYRKLAKREKDPENREILLKLAEDERRHAEFWKKFLGKRGVP 57 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 3456677888999999999999999999999999999999999999999887644
No 51
>COG2193 Bfr Bacterioferritin (cytochrome b1) [Inorganic ion transport and metabolism]
Probab=45.30 E-value=35 Score=29.94 Aligned_cols=58 Identities=16% Similarity=0.189 Sum_probs=46.0
Q ss_pred CchhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc
Q 037861 9 SDVDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVK 75 (273)
Q Consensus 9 ~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg 75 (273)
+-.++|+-=|++||--.+=|..+. +... ..-|...++++.+|-.+|.+|+.+|+..|+
T Consensus 82 tv~E~L~~DL~~E~~a~~~lk~~i-----~~~e----~~~Dyvsrdl~~~iL~deEEHid~LetqL~ 139 (157)
T COG2193 82 TVKEMLEADLALEYEARDALKEAI-----AYCE----EVQDYVSRDLLEEILADEEEHIDWLETQLD 139 (157)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH-----HHHH----hcccchHHHHHHHHHcchHHHHHHHHHHHH
Confidence 446899999999998888887773 2211 224678899999999999999999999875
No 52
>PF12902 Ferritin-like: Ferritin-like; PDB: 3HL1_A.
Probab=44.88 E-value=60 Score=29.71 Aligned_cols=61 Identities=18% Similarity=0.224 Sum_probs=42.0
Q ss_pred hhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhcCCC-CCccc
Q 037861 14 LEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVKGFP-RPLLD 83 (273)
Q Consensus 14 LNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLga~~-~P~id 83 (273)
||-|+.||+-----|+.+.+.. . ...+..++..+++|+.+|.-|....-+.|.++. +|.++
T Consensus 1 Lq~Ai~lE~atip~YL~a~ySi--~-------~~~~~~~~~~i~~V~~eEMlHl~l~~Nll~alGg~P~l~ 62 (227)
T PF12902_consen 1 LQQAIELELATIPPYLTALYSI--K-------PGTNEEARNLIRSVAIEEMLHLSLAANLLNALGGSPRLT 62 (227)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHB--S--------TTSH-HHHHHHHHHHHHHHHHHHHHHHHHHTT------
T ss_pred CcHHHHHHHHHHHHHHHHHccc--C-------CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccc
Confidence 6788999988888888887642 1 234566999999999999999999887776333 25554
No 53
>COG2941 CAT5 Ubiquinone biosynthesis protein COQ7 [Coenzyme metabolism]
Probab=44.17 E-value=43 Score=30.47 Aligned_cols=34 Identities=21% Similarity=0.170 Sum_probs=27.1
Q ss_pred CHHHHHHHHHHHHhHHHHHHHHHHhhc-CCCCCcc
Q 037861 49 NPFTNDVVLQFVWQEVGHLRAIKNTVK-GFPRPLL 82 (273)
Q Consensus 49 ~~~v~~~~~eia~~E~~HV~~L~~aLg-a~~~P~i 82 (273)
++..+-.++|+++||+.|.....+-|- --.||.+
T Consensus 69 ~~~~R~~l~em~d~E~~HL~~f~~~l~e~~vRPsl 103 (204)
T COG2941 69 SPEPRIQLKEMADEEIDHLAWFEQRLLELGVRPSL 103 (204)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHccCCccH
Confidence 456667999999999999999988876 5557754
No 54
>PF03232 COQ7: Ubiquinone biosynthesis protein COQ7; InterPro: IPR011566 Coq7 (also known as Clk-1) is a di-iron carboxylate protein occuring in both prokaryotes and eukaryotes that is essential for ubiquinone biosynthesis [, ]. It has been implicated in the aging process as mutations in the Caenorhabditis elegans gene lead to increased lifespan []. Coq7 is a membrane-bound protein that functions as a monooxygenase to hydroxylate demethoxyubiquinone (2-methoxy-5-methyl-6-polyprenyl-1,4-benzoquinone) in the penultimate step of ubiquinone biosynthesis []. Biochemical studies indicate that NADH can serve directly as a reductant for catalytic activation of dioxygen and substrate oxidation by the enzyme, with no requirement for an additional reductase protein component []. This direct reaction with NADH is so far unique amongst members of the di-iron carboxylate protein family. This entry is specific for the bacterial Coq7 proteins.; GO: 0006744 ubiquinone biosynthetic process, 0055114 oxidation-reduction process
Probab=43.64 E-value=52 Score=28.98 Aligned_cols=55 Identities=15% Similarity=0.073 Sum_probs=46.6
Q ss_pred HHHhhccchhhhhhccccccCC-CHHHHHHHHhHHHhhhhhHHHHHHHHHhhhcccCCC
Q 037861 116 IASYLNPYVGLTGYVGANPNLQ-DAVSQRLAAGLLGVKSGQDAIIRTLLYQKANEKVHP 173 (273)
Q Consensus 116 ~~A~~~E~VGvsAY~Gaap~l~-~~~~l~~AA~Il~VEA~Haa~IR~lL~~~~~~~v~P 173 (273)
..-..-|.-.+.-|.|+.-.+. ++..+.....++..|..|-.+.+.++.+++ ++|
T Consensus 8 RVdHAGE~~A~~iY~gQ~~~~~~~~~~~~~l~~~~~~E~~Hl~~f~~~l~~~~---~Rp 63 (172)
T PF03232_consen 8 RVDHAGEVGAVRIYRGQLAVARRDPELRPFLKEMAEEEKDHLAWFEQLLPELR---VRP 63 (172)
T ss_pred HHhHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHcC---CCC
Confidence 3334456666788999999999 999999999999999999999999999975 455
No 55
>PF11220 DUF3015: Protein of unknown function (DUF3015); InterPro: IPR021383 This bacterial family of proteins has no known function.
Probab=42.98 E-value=48 Score=28.57 Aligned_cols=63 Identities=14% Similarity=0.063 Sum_probs=47.2
Q ss_pred hhccchhhhhhccccccCCCHHHHHHHHhHHHhhhhhHHHHHHHHHhhhcccCCCCCccHHHHHHHHHH
Q 037861 119 YLNPYVGLTGYVGANPNLQDAVSQRLAAGLLGVKSGQDAIIRTLLYQKANEKVHPYGIPVAAFTNKISQ 187 (273)
Q Consensus 119 ~~~E~VGvsAY~Gaap~l~~~~~l~~AA~Il~VEA~Haa~IR~lL~~~~~~~v~Py~~tV~~~t~~IS~ 187 (273)
..++.+--=.-.|- =++|.+.+.+++|++.|.+.++..+.++-.+..+.-.+|-.++.++|-+
T Consensus 69 ~n~d~La~DiA~G~------GE~L~ala~llgv~~~d~~~f~~~~q~nF~~if~s~~~t~~~v~~~i~~ 131 (144)
T PF11220_consen 69 SNMDNLAQDIARGQ------GEHLDALAELLGVPAEDRAAFGAVLQENFASIFPSESVTSEEVLDNIVA 131 (144)
T ss_pred HHHHHHHHHHHcCC------cchHHHHHHHhCCCHhhHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHH
Confidence 34455544444443 3568899999999999999999999999988877767777776666544
No 56
>PF11553 DUF3231: Protein of unknown function (DUF3231); InterPro: IPR021617 This bacterial family of proteins has no known function. ; PDB: 2RBD_B.
Probab=40.18 E-value=2.3e+02 Score=23.96 Aligned_cols=103 Identities=15% Similarity=0.110 Sum_probs=59.0
Q ss_pred CCHHHHHHHHHHHHhHHHHHHHHHHhhc--CCCCCcc----cCCcchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhc
Q 037861 48 LNPFTNDVVLQFVWQEVGHLRAIKNTVK--GFPRPLL----DLSAGSFAKVIDKAFGKPLNPPLDPYANSINYLIASYLN 121 (273)
Q Consensus 48 l~~~v~~~~~eia~~E~~HV~~L~~aLg--a~~~P~i----d~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~ 121 (273)
-|+.++.++++....-..|++.|++.+. ++|-|.- |..... .++ | +|...+.--+.+
T Consensus 44 ~D~dik~~l~~~~~~~~~~i~~l~~ll~~e~ip~P~~~~~~~v~~~~-------------~~l---f-sD~~~l~~~~~~ 106 (166)
T PF11553_consen 44 EDKDIKKLLKKGLDLSQKQIEQLEKLLKEEGIPVPPGFPESDVTDSA-------------PPL---F-SDKFMLFYISFM 106 (166)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHTT-------------GGG-------------S-G------HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcccccCCCC-------------CCC---C-CcHHHHHHHHHH
Confidence 4789999999999999999999999997 6665532 222110 012 3 345555555566
Q ss_pred cchhhhhhccccccCCCHHHHHHHHhHHHhhhhhHHHHHHHHHhhh
Q 037861 122 PYVGLTGYVGANPNLQDAVSQRLAAGLLGVKSGQDAIIRTLLYQKA 167 (273)
Q Consensus 122 E~VGvsAY~Gaap~l~~~~~l~~AA~Il~VEA~Haa~IR~lL~~~~ 167 (273)
-..|++.|..+......++++..--..+.-+..-.--+-.++.+++
T Consensus 107 ~~~~~~~~~~al~~s~R~Dl~~~f~~~~~~~~~~~~~~~~l~~~KG 152 (166)
T PF11553_consen 107 SQAGITNYGRALSSSVRNDLRAFFMKFLMEALELYDKIVKLMKEKG 152 (166)
T ss_dssp HHHHHHHHHHHHHH--SHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 6789999998888888888766665555443333333333333333
No 57
>cd01050 Acyl_ACP_Desat Acyl ACP desaturase, ferritin-like diiron-binding domain. Acyl-Acyl Carrier Protein Desaturase (Acyl_ACP_Desat) is a mu-oxo-bridged diiron-carboxylate enzyme, which belongs to a broad superfamily of ferritin-like proteins and catalyzes the NADPH and O2-dependent formation of a cis-double bond in acyl-ACPs. Acyl-ACP desaturases are found in higher plants and a few bacterial species (Mycobacterium tuberculosis, M. leprae, M. avium and Streptomyces avermitilis, S. coelicolor). In plants, Acyl-ACP desaturase is a plastid-localized, covalently ACP linked, soluble desaturase that introduces the first double bound into saturated fatty acids, resulting in the corresponding monounsaturated fatty acid. Members of this class of soluble desaturases are specific for a particular substrate chain length and introduce the double bond between specific carbon atoms. For example, delta 9 stearoyl-ACP is specific for stearic acid and introduces a double bond between carbon 9 and 1
Probab=37.76 E-value=3.6e+02 Score=25.81 Aligned_cols=109 Identities=12% Similarity=0.049 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHhhc--CCCCCcccCCcchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhhh
Q 037861 50 PFTNDVVLQFVWQEVGHLRAIKNTVK--GFPRPLLDLSAGSFAKVIDKAFGKPLNPPLDPYANSINYLIASYLNPYVGLT 127 (273)
Q Consensus 50 ~~v~~~~~eia~~E~~HV~~L~~aLg--a~~~P~id~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvs 127 (273)
+.....+..-...|..|-.+|++-|- +...|. .+.......++....|+++ .+. --..+...|-..+..
T Consensus 93 ~~w~~w~~~WtaEE~rHg~aL~~YL~~sg~vdp~------~le~~~~~~~~~G~~~~~~--~~~-~~~~~y~~fqE~aT~ 163 (297)
T cd01050 93 TAWARWVRRWTAEENRHGDLLNKYLYLTGRVDPR------ALERTRQYLIGSGFDPGTD--NSP-YRGFVYTSFQELATR 163 (297)
T ss_pred cHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHhCCCCCCCc--ccH-HHHHHHHHHHHHHHH
Confidence 44555567888899999999999875 222222 2223333334443333331 223 112222236666666
Q ss_pred hhccccc-cC--CCHHHHHHHHhHHHhhhhhHHHHHHHHHhhh
Q 037861 128 GYVGANP-NL--QDAVSQRLAAGLLGVKSGQDAIIRTLLYQKA 167 (273)
Q Consensus 128 AY~Gaap-~l--~~~~~l~~AA~Il~VEA~Haa~IR~lL~~~~ 167 (273)
.|.+... .. .+|...++..-|.+.|+||-..-+.++..--
T Consensus 164 v~y~nl~~~a~~gdPvL~~i~~~IA~DE~rH~~fy~~~v~~~l 206 (297)
T cd01050 164 ISHRNTARLAGAGDPVLAKLLGRIAADEARHEAFYRDIVEALF 206 (297)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666443 33 5788899999999999999999988876543
No 58
>cd01052 DPSL DPS-like protein, ferritin-like diiron-binding domain. DPSL (DPS-like). DPSL is a phylogenetically distinct class within the ferritin-like superfamily, and similar in many ways to the DPS (DNA Protecting protein under Starved conditions) proteins. Like DPS, these proteins are expressed in response to oxidative stress, form dodecameric cage-like particles, preferentially utilize hydrogen peroxide in the controlled oxidation of iron, and possess a short N-terminal extension implicated in stabilizing cellular DNA. This domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. These proteins are distantly related to bacterial ferritins which assemble 24 monomers, each of which have a four-helix bundle with a fifth shorter helix at the C terminus and a diiron (ferroxidase) center. Ferritins contain a center where oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical
Probab=34.71 E-value=1.7e+02 Score=23.65 Aligned_cols=57 Identities=16% Similarity=0.184 Sum_probs=45.9
Q ss_pred CCchhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhh
Q 037861 8 QSDVDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTV 74 (273)
Q Consensus 8 ~~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aL 74 (273)
.+..++|.-++..|..-.+-|....- .. ..-|..+++++.+|-.+|..|+.-++..|
T Consensus 92 ~~~~~~l~~~~~~e~~~i~~~~~~~~-----~a-----~~~D~~t~~ll~~~l~de~~h~~~~~~~~ 148 (148)
T cd01052 92 PDVKGILKVNLKAERCAIKVYKELCD-----MT-----HGKDPVTYDLALAILNEEIEHEEDLEELL 148 (148)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHH-----HH-----cCCChHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 35578999999999999999988742 10 12588999999999999999999988654
No 59
>COG4902 Uncharacterized protein conserved in archaea [Function unknown]
Probab=33.56 E-value=1e+02 Score=27.28 Aligned_cols=56 Identities=20% Similarity=0.279 Sum_probs=40.2
Q ss_pred hhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc--CCCCCcccCC
Q 037861 14 LEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVK--GFPRPLLDLS 85 (273)
Q Consensus 14 LNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg--a~~~P~id~s 85 (273)
|=|----|-|...-|++- .+.+-..+++.|+..|+.|..+.+..|. .++.|.-.-+
T Consensus 54 LiyMrEEEKLARDVYL~L----------------Ynkw~l~IF~nIA~SEQ~HmDAVk~LlekYnv~dP~~~~s 111 (189)
T COG4902 54 LIYMREEEKLARDVYLYL----------------YNKWNLPIFRNIAASEQEHMDAVKSLLEKYNVQDPASTTS 111 (189)
T ss_pred HHHHHHHHHHHhhHHhhh----------------hhccCcHHHHHHHHhHHHHHHHHHHHHHHcCCCCCCccCc
Confidence 444444556666666655 3445557899999999999999999998 8888865433
No 60
>TIGR00754 bfr bacterioferritin. Bacterioferritin is a homomultimer most species. In Neisseria gonorrhoeae, Synechocystis PCC6803, Magnetospirillum magnetotacticum, and Pseudomonas aeruginosa, two types of subunit are found in a heteromultimeric complex, with each species having one member of each type. At present, both types of subunit are including in this single model.
Probab=33.07 E-value=1.8e+02 Score=24.20 Aligned_cols=58 Identities=14% Similarity=0.091 Sum_probs=45.9
Q ss_pred CchhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc
Q 037861 9 SDVDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVK 75 (273)
Q Consensus 9 ~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg 75 (273)
+-.++|..+|..|---.+.|...+-- .. .--|..+.++++.|..+|..|+.+|++.|+
T Consensus 82 ~~~e~l~~~l~~E~~~~~~~~e~i~~---A~------~~~D~~t~~ll~~~i~eee~h~~~l~~~l~ 139 (157)
T TIGR00754 82 TVREMLEADLALELDVLNRLKEAIAY---AE------EVRDYVSRDLLEEILEDEEEHIDWLETQLE 139 (157)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH---HH------HcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678999999988888888877310 00 124789999999999999999999999886
No 61
>PF13628 DUF4142: Domain of unknown function (DUF4142)
Probab=32.63 E-value=2.7e+02 Score=22.65 Aligned_cols=108 Identities=18% Similarity=0.111 Sum_probs=66.4
Q ss_pred CCCHHHHHHHHHHHHhHHHHHHHHHHhhc--CCCCCcccCCcchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccch
Q 037861 47 NLNPFTNDVVLQFVWQEVGHLRAIKNTVK--GFPRPLLDLSAGSFAKVIDKAFGKPLNPPLDPYANSINYLIASYLNPYV 124 (273)
Q Consensus 47 ~l~~~v~~~~~eia~~E~~HV~~L~~aLg--a~~~P~id~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~V 124 (273)
.-++.|+++++.+..+...--..|+.... ++.-|.-.++. .-...++.--+ .-++.|| ..||..--.--.=
T Consensus 28 ~~~~~Vk~~A~~~~~dh~~~~~~l~~la~~~~v~lp~~~~~~-~~~~~l~~L~~-~~g~~FD-----~~yl~~~i~~h~~ 100 (139)
T PF13628_consen 28 ASSPEVKAFAQQMVEDHTQANQQLAALAAKKGVTLPPTALSA-EQQAELDRLQK-LSGSAFD-----RAYLDAQIKAHEK 100 (139)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccH-hhHHHHHHHHc-CchhHHH-----HHHHHHHHHHHHH
Confidence 35789999999999887776666665544 45444212221 11222222111 1112453 3455554333344
Q ss_pred hhhhhcc-ccccCCCHHHHHHHHhHHHhhhhhHHHHHH
Q 037861 125 GLTGYVG-ANPNLQDAVSQRLAAGLLGVKSGQDAIIRT 161 (273)
Q Consensus 125 GvsAY~G-aap~l~~~~~l~~AA~Il~VEA~Haa~IR~ 161 (273)
-+..|.. .++.-.|+.+++.|...+.+--.|-.-.|.
T Consensus 101 ~l~~~~~~~~~~~~~~~lk~~a~~~lp~l~~hl~~a~~ 138 (139)
T PF13628_consen 101 ALALFEKQLAASGKDPELKAFAQETLPVLEAHLEMARA 138 (139)
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHHhHHHHHHHHHHhh
Confidence 5677888 888899999999999999888888776664
No 62
>PF11583 AurF: P-aminobenzoate N-oxygenase AurF; PDB: 3CHI_B 3CHT_A 3CHH_A 2JCD_B 3CHU_A.
Probab=32.30 E-value=1.1e+02 Score=28.24 Aligned_cols=112 Identities=10% Similarity=0.094 Sum_probs=63.9
Q ss_pred CCHHHHHHHHHHHHhHHHHHHHHHHhhc--C----CCC-CcccCCcchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhh
Q 037861 48 LNPFTNDVVLQFVWQEVGHLRAIKNTVK--G----FPR-PLLDLSAGSFAKVIDKAFGKPLNPPLDPYANSINYLIASYL 120 (273)
Q Consensus 48 l~~~v~~~~~eia~~E~~HV~~L~~aLg--a----~~~-P~id~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~ 120 (273)
.+...+.++.+.-.+|..|+....+.+. + ++. |.. ..+....+.... .+.+.....-++..+.+
T Consensus 110 ~~~~~~~~~~~~i~DE~rH~~mf~~~~~~~~~~~~l~~~~~~----~~~~~~~~~l~~-----~~~~~~~~~~~~~~~lv 180 (304)
T PF11583_consen 110 PDDDAKRYALTEIADEARHSLMFARAINRTGRRRGLAPLPPP----YPPRRLLRRLAR-----LLPPWERGLLFFAFALV 180 (304)
T ss_dssp T-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----S------HHHHHHHHHHHT-----S-SHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccCCCC----CchHHHHHHHHH-----hcccccchHHHHHHHHH
Confidence 4567888888888899999998888765 2 111 111 122222222211 12222234456666666
Q ss_pred ccchhhhhhccccccC--CCHHHHHHHHhHHHhhhhhHHHHHHHHHhhhcc
Q 037861 121 NPYVGLTGYVGANPNL--QDAVSQRLAAGLLGVKSGQDAIIRTLLYQKANE 169 (273)
Q Consensus 121 ~E~VGvsAY~Gaap~l--~~~~~l~~AA~Il~VEA~Haa~IR~lL~~~~~~ 169 (273)
.|.+ ++.|.-....= ..|-++++..-....|+||.+.-|..+...-..
T Consensus 181 ~Ee~-i~~~~~~~~~D~~iqP~~r~v~~iH~~DEaRHi~f~~~~l~~~~~~ 230 (304)
T PF11583_consen 181 AEEI-IDAYQREIARDETIQPLVRQVMRIHVRDEARHIAFAREELRRVWPR 230 (304)
T ss_dssp HHHS-BHHHHHHHHT-SSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6766 66666543221 134556666666677999999999988775443
No 63
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=30.91 E-value=34 Score=33.91 Aligned_cols=63 Identities=17% Similarity=0.225 Sum_probs=50.1
Q ss_pred CCCCCCChHHHHHHHhhc-c---chhhhhhccccccCCC---HHHHHHHHhHHHhhhhhHHHHHHHHHhhh
Q 037861 104 PLDPYANSINYLIASYLN-P---YVGLTGYVGANPNLQD---AVSQRLAAGLLGVKSGQDAIIRTLLYQKA 167 (273)
Q Consensus 104 ~FdPy~n~~~FL~~A~~~-E---~VGvsAY~Gaap~l~~---~~~l~~AA~Il~VEA~Haa~IR~lL~~~~ 167 (273)
+-|||.++.-|+.+|..- . .+++|| ...+|+..+ +..++-.+.++-.|-.|..-||.+++-..
T Consensus 126 DiDPFGSPaPFlDaA~~s~~~~G~l~vTA-TD~a~L~G~~p~~c~rkY~a~~~~~~~~hE~glR~Lig~va 195 (380)
T COG1867 126 DIDPFGSPAPFLDAALRSVRRGGLLCVTA-TDTAPLCGSYPRKCRRKYGAVPLKTEFCHEVGLRILIGYVA 195 (380)
T ss_pred ecCCCCCCchHHHHHHHHhhcCCEEEEEe-cccccccCCChHHHHHHhccccCCCcchhHHHHHHHHHHHH
Confidence 358999999999987543 3 466666 445677766 66899999999999999999999988644
No 64
>COG2406 Protein distantly related to bacterial ferritins [General function prediction only]
Probab=29.93 E-value=73 Score=28.07 Aligned_cols=58 Identities=19% Similarity=0.203 Sum_probs=42.8
Q ss_pred CCch-hhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc
Q 037861 8 QSDV-DLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVK 75 (273)
Q Consensus 8 ~~D~-diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg 75 (273)
+.|+ .+|.-++..|--.-.=|..-- +++++.|+.+.++++.|-.+|+.|-.-+-..|+
T Consensus 102 p~D~~~~l~vlv~AE~CAir~ykeic----------~~T~GkDprTyeLa~~IL~eEi~hr~~~~~ll~ 160 (172)
T COG2406 102 PYDIDEILAVLVKAERCAIRAYKEIC----------NLTAGKDPRTYELAEAILREEIEHRTWFLELLG 160 (172)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHH----------ccccCCCcchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3443 367777777665544444431 234788999999999999999999999988887
No 65
>PF04305 DUF455: Protein of unknown function (DUF455); InterPro: IPR007402 This is a family of uncharacterised proteins.
Probab=29.39 E-value=3.9e+02 Score=24.95 Aligned_cols=137 Identities=19% Similarity=0.110 Sum_probs=87.4
Q ss_pred hhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhcCCCCCcccCCc--ch
Q 037861 11 VDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVKGFPRPLLDLSA--GS 88 (273)
Q Consensus 11 ~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLga~~~P~id~s~--~~ 88 (273)
+.+|..--+.||..-+-...+++.++ ..++.....-..+++.+|..|.+.|++-|.......=||.. +=
T Consensus 68 ~~llHaiAhIE~~AIdLa~Da~~RF~---------~~lP~~f~~D~~~va~dEarHf~ll~~rL~~lG~~yGd~P~h~gL 138 (253)
T PF04305_consen 68 AALLHAIAHIELNAIDLALDAIYRFH---------PNLPREFYDDWLRVADDEARHFRLLRERLEELGSDYGDLPAHDGL 138 (253)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHh---------ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcchhhHH
Confidence 44566666788888777777776551 24667777778899999999999999998743333334432 22
Q ss_pred HHHHHHHhcCCCCCCCCCCCCChHHHHH-HHhhccchhhhhhcccccc---CCCHHHHHHHHhHHHhhhhhHH----HHH
Q 037861 89 FAKVIDKAFGKPLNPPLDPYANSINYLI-ASYLNPYVGLTGYVGANPN---LQDAVSQRLAAGLLGVKSGQDA----IIR 160 (273)
Q Consensus 89 F~~~~~~A~g~~l~p~FdPy~n~~~FL~-~A~~~E~VGvsAY~Gaap~---l~~~~~l~~AA~Il~VEA~Haa----~IR 160 (273)
|.++.+.+ .|....|. ...++|.-|+-+--..... ..+..+.++.--|+.-|..|-+ |.|
T Consensus 139 w~~~~~t~------------~dl~~R~A~vp~~~EArGLD~~p~~~~k~~~~gD~~sa~iL~~I~~DEi~HV~~G~rWf~ 206 (253)
T PF04305_consen 139 WEAAEQTA------------HDLLARMALVPRVLEARGLDVTPFIIEKFRSAGDEESAAILEIILRDEIGHVAIGNRWFR 206 (253)
T ss_pred HHHHHHhc------------cCHHHHHHHHHHHHHhhCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 33332211 13344443 3567777776544433333 3466677888899999999964 677
Q ss_pred HHHHhhhc
Q 037861 161 TLLYQKAN 168 (273)
Q Consensus 161 ~lL~~~~~ 168 (273)
-+..+++.
T Consensus 207 ~~c~~~~~ 214 (253)
T PF04305_consen 207 YLCEQRGL 214 (253)
T ss_pred HHHHhccc
Confidence 77776553
No 66
>PF05974 DUF892: Domain of unknown function (DUF892); InterPro: IPR010287 This domain is found in several hypothetical bacterial proteins of unknown function.; PDB: 4ERU_B 3OGH_A 2GS4_B 2GYQ_B 3HIU_A.
Probab=26.62 E-value=98 Score=26.42 Aligned_cols=113 Identities=12% Similarity=0.101 Sum_probs=67.7
Q ss_pred CCHHHHHHHHHHHHhHHHHHHHHHHhhc--CCCCCcccCCc-chHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccch
Q 037861 48 LNPFTNDVVLQFVWQEVGHLRAIKNTVK--GFPRPLLDLSA-GSFAKVIDKAFGKPLNPPLDPYANSINYLIASYLNPYV 124 (273)
Q Consensus 48 l~~~v~~~~~eia~~E~~HV~~L~~aLg--a~~~P~id~s~-~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~V 124 (273)
-+|..+..+++-..+...|+.-|+..+. +.+.....|.. ..+-+-++...+.. .=||-.-+...+.+++.+|..
T Consensus 32 ~~~~L~~~l~~h~~eT~~q~~rLe~~~~~lg~~p~~~~c~~~~gl~~e~~~~~~~~---~~d~~~~D~~li~a~q~~ehy 108 (159)
T PF05974_consen 32 SSPELKAALEEHLEETEQQIERLEQIFEALGADPSAEKCDAMEGLVAEAQELIEEF---AEDPAVKDAALIAAAQKVEHY 108 (159)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-CHH-HHHHHHHHHHHHHHHT----S-SHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCccCcchHHHHHHHHHHHHHhcc---cCCchHhhHHHHHHHHHHHHH
Confidence 3589999999999999999999999876 22211222210 12222222222220 123334455667789999999
Q ss_pred hhhhhccc---cccCCCHHHHHHHHhHHHhhhhhHHHHHHHH
Q 037861 125 GLTGYVGA---NPNLQDAVSQRLAAGLLGVKSGQDAIIRTLL 163 (273)
Q Consensus 125 GvsAY~Ga---ap~l~~~~~l~~AA~Il~VEA~Haa~IR~lL 163 (273)
.+.+|... +..+..++..++.-..|.=|-..+.+++.+.
T Consensus 109 eIA~Y~tL~~~A~~lG~~e~a~lL~~~L~EE~~~~~~L~~~a 150 (159)
T PF05974_consen 109 EIAAYGTLIALAKQLGDEEAAQLLEQNLDEEEAADEKLTQLA 150 (159)
T ss_dssp HHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999754 3445556666666666666666666666544
No 67
>TIGR02284 conserved hypothetical protein. Members of this protein family are found mostly in the Proteobacteria, although one member is found in the the marine planctomycete Pirellula sp. strain 1. The function is unknown.
Probab=25.05 E-value=2.4e+02 Score=23.58 Aligned_cols=79 Identities=16% Similarity=0.172 Sum_probs=62.3
Q ss_pred cchhhhhhccccccCCCHHHHHHHHhHHHhhhhhHHHHHHHHHhhhcccCCCCCccHHHHHHHHHHHHhhcCCCCCCCCc
Q 037861 122 PYVGLTGYVGANPNLQDAVSQRLAAGLLGVKSGQDAIIRTLLYQKANEKVHPYGIPVAAFTNKISQMRNNLGRSGLKDEG 201 (273)
Q Consensus 122 E~VGvsAY~Gaap~l~~~~~l~~AA~Il~VEA~Haa~IR~lL~~~~~~~v~Py~~tV~~~t~~IS~lR~~L~~~g~~DeG 201 (273)
.+=|.-+|.=++-.+.++.++...-.+..--..|..-++..+-..+.+... .+-..+.+....-++|..++ +.+|+.
T Consensus 12 ~~D~~~gY~~aae~v~~~~lk~~f~~~~~~~~~~~~eL~~~v~~lGg~p~~-~gs~~g~lhr~w~~lks~~~--~~~d~a 88 (139)
T TIGR02284 12 SIDGKDGFEESAEEVKDPELATLFRRIAGEKSAIVSELQQVVASLGGKPED-HGSMVGSLHQFWGKIRATLT--PNDDYV 88 (139)
T ss_pred cccHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC-CCcHHHHHHHHHHHHHHHHc--CCChHH
Confidence 445788999999999999999999999999999999999988887754211 33445677888899999998 456666
Q ss_pred cc
Q 037861 202 LL 203 (273)
Q Consensus 202 i~ 203 (273)
+.
T Consensus 89 iL 90 (139)
T TIGR02284 89 VL 90 (139)
T ss_pred HH
Confidence 64
No 68
>cd00904 Ferritin Ferritin iron storage proteins. Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Bacterial non-heme ferritins are composed only of H chains. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary rol
Probab=23.98 E-value=4.4e+02 Score=22.20 Aligned_cols=97 Identities=16% Similarity=0.111 Sum_probs=57.6
Q ss_pred hhhhhhHHHHHHHHHHHHHhcccCCCccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc-CCCCCcc-cCCcch
Q 037861 11 VDLLEFPLNLEYLEAEFFLFGSLGHGLDKVAPNLTANLNPFTNDVVLQFVWQEVGHLRAIKNTVK-GFPRPLL-DLSAGS 88 (273)
Q Consensus 11 ~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg-a~~~P~i-d~s~~~ 88 (273)
.+.||=.+|.|+--+..|+.-+.= .+.-+ -++ +-....+..-+..|..|..-|-+-|- --.+|.+ ++..
T Consensus 5 ~~~Ln~qi~~El~as~~Yl~ma~~--~~~~~----~~l-~g~a~~f~~~s~eE~~HA~~l~~yi~~rgg~~~l~~i~~-- 75 (160)
T cd00904 5 EAAVNRQLNLELYASYTYLSMATY--FDRDD----VAL-KGVAHFFKEQAQEEREHAEKFYKYQNERGGRVELQDIEK-- 75 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--Hcccc----ccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHCCCccccCcCCC--
Confidence 367999999999888777754321 11100 023 34556788889999999998887764 2222322 1110
Q ss_pred HHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhhhhhc
Q 037861 89 FAKVIDKAFGKPLNPPLDPYANSINYLIASYLNPYVGLTGYV 130 (273)
Q Consensus 89 F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvsAY~ 130 (273)
|+-+-|.+....+..+.-.|..-...+.
T Consensus 76 --------------~~~~~~~~~~e~~e~al~~Ek~v~~~i~ 103 (160)
T cd00904 76 --------------PPSDEWGGTLDAMEAALKLEKFVNQALL 103 (160)
T ss_pred --------------CcccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 1122246777777777777766554443
No 69
>cd01042 DMQH Demethoxyubiquinone hydroxylase, ferritin-like diiron-binding domain. Demethoxyubiquinone hydroxylases (DMQH) are members of the ferritin-like, diiron-carboxylate family which are present in eukaryotes (the CLK-1/CAT5 family) and prokaryotes (the Coq7 family). DMQH participates in one of the last steps of ubiquinone biosysnthesis and is responsible for DMQ hydroxylation, resulting in the formation of hydroxyubiquinone, a precursor of ubiquinone. CLK-1 is a mitochondrial inner membrane protein and Coq7 is a proposed interfacial integral membrane protein. Mutations in the Caenorhabditis elegans gene clk-1 affect biological timing and extend longevity. The conserved residues of a diiron center are present in this domain.
Probab=22.96 E-value=1.2e+02 Score=26.63 Aligned_cols=46 Identities=17% Similarity=0.129 Sum_probs=42.1
Q ss_pred cchhhhhhccccccCCCHHHHHHHHhHHHhhhhhHHHHHHHHHhhh
Q 037861 122 PYVGLTGYVGANPNLQDAVSQRLAAGLLGVKSGQDAIIRTLLYQKA 167 (273)
Q Consensus 122 E~VGvsAY~Gaap~l~~~~~l~~AA~Il~VEA~Haa~IR~lL~~~~ 167 (273)
|.-.+.-|.|++-.+.++..+...--+...|-.|-.+....+.+++
T Consensus 12 E~gA~~IY~gQ~~~~~~~~~~~~l~~~~~~E~~Hl~~f~~~i~~~~ 57 (165)
T cd01042 12 EVGAVRIYRGQLAVARDPAVRPLIKEMLDEEKDHLAWFEELLPELG 57 (165)
T ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 5556788999999999999999999999999999999999999875
No 70
>COG3546 Mn-containing catalase [Inorganic ion transport and metabolism]
Probab=21.21 E-value=7.4e+02 Score=23.76 Aligned_cols=119 Identities=18% Similarity=0.177 Sum_probs=73.4
Q ss_pred CHHHHHHHHHHHHhHHHHHHHHHHhhc----CCC------CCcccCCc----chHHHHHHHhcCC-CCCCCCCCCC----
Q 037861 49 NPFTNDVVLQFVWQEVGHLRAIKNTVK----GFP------RPLLDLSA----GSFAKVIDKAFGK-PLNPPLDPYA---- 109 (273)
Q Consensus 49 ~~~v~~~~~eia~~E~~HV~~L~~aLg----a~~------~P~id~s~----~~F~~~~~~A~g~-~l~p~FdPy~---- 109 (273)
+...++++..|+-.|.+|+..+-+.+. +.+ .|.+.-.- ..+..+ .-.|. +.+..=.|++
T Consensus 51 ~~~~~dll~DI~TEEl~HlEmvat~I~~L~~ga~~e~~~~~~l~~s~~~~~n~~h~~~--~~~g~~p~dS~G~pWta~YI 128 (277)
T COG3546 51 DAKYKDLLMDIGTEELSHLEMVATMINLLNKGATGEGAEEAELYGSGLGGMNPHHISV--LLYGAGPADSAGVPWTAAYI 128 (277)
T ss_pred chHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCCCCCCcchhhHHhhccCCCchhhhh--hccCCCCcccCCCccchhhh
Confidence 367999999999999999999988865 222 23322110 011111 00111 0111111111
Q ss_pred ----ChHHHHHHHhhccchhhhhhccccccCCCHHHHHHHHhHHHhhhhhHHHHHHHHHhhhcc
Q 037861 110 ----NSINYLIASYLNPYVGLTGYVGANPNLQDAVSQRLAAGLLGVKSGQDAIIRTLLYQKANE 169 (273)
Q Consensus 110 ----n~~~FL~~A~~~E~VGvsAY~Gaap~l~~~~~l~~AA~Il~VEA~Haa~IR~lL~~~~~~ 169 (273)
|.+.=|..=...|--+-.-|.=..-+..||.++....=++.=|..|.-..+..|..-...
T Consensus 129 ~~sGnliaDlr~NiaaE~~aR~~y~rLy~mtdDpgvrd~L~fLl~Re~~H~~~f~kAL~~l~~~ 192 (277)
T COG3546 129 VASGNLIADLRSNIAAEARARLQYERLYEMTDDPGVRDTLSFLLTREIAHQNAFRKALESLENE 192 (277)
T ss_pred hccCccHHHHHHHHHHHhccceeeeeeeecCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 111122333344556666778788888999999999999999999999999888876554
No 71
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=20.17 E-value=32 Score=34.96 Aligned_cols=54 Identities=17% Similarity=0.286 Sum_probs=32.4
Q ss_pred HHHhhc--CCCCCcccCCcchHHHHHHHhcCCCCCCCCCCCCChHHH---HHHHhhccchhhhhhccc
Q 037861 70 IKNTVK--GFPRPLLDLSAGSFAKVIDKAFGKPLNPPLDPYANSINY---LIASYLNPYVGLTGYVGA 132 (273)
Q Consensus 70 L~~aLg--a~~~P~id~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~F---L~~A~~~E~VGvsAY~Ga 132 (273)
+=++|| .+.+|. .++|...+++..|. +--|...-++ ....-+-|-+++..|..-
T Consensus 62 iMRaLGEm~~~~p~----~gSF~~~a~~~lG~-----~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~ 120 (462)
T COG1113 62 IMRALGEMLVANPV----SGSFSDYARKYLGP-----WAGFLTGWTYWFFWVLVGIAELTAIGIYLQF 120 (462)
T ss_pred HHHHHHHHHHhCCC----CCcHHHHHHHHhcc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555 444554 35899999999873 3334444433 233445677888888765
No 72
>PF03713 DUF305: Domain of unknown function (DUF305); InterPro: IPR005183 A domain that is found in small family of bacterial secreted proteins with no known function. It ia also found in Paramecium bursaria Chlorella virus 1 (PBCV-1). This domain is short and found in one or two copies. The domain has a conserved HH motif that may be functionally important.; PDB: 2QF9_B 3BT5_A.
Probab=20.05 E-value=4.3e+02 Score=21.78 Aligned_cols=106 Identities=10% Similarity=0.131 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhHHHHHHHHHHhhcCCCCCcccCC------------------cchHHHHHHHhcCCCCCCCCCCCCC
Q 037861 49 NPFTNDVVLQFVWQEVGHLRAIKNTVKGFPRPLLDLS------------------AGSFAKVIDKAFGKPLNPPLDPYAN 110 (273)
Q Consensus 49 ~~~v~~~~~eia~~E~~HV~~L~~aLga~~~P~id~s------------------~~~F~~~~~~A~g~~l~p~FdPy~n 110 (273)
+|.++.++++|.......+..+++-|.....|.-+-. ....-..+..+-|...
T Consensus 28 ~p~vr~lA~~I~~~Q~~ei~~m~~wl~~~~~~~~~~~~~~~~~~~~~~~~m~~m~~~~~~~~l~~~~g~~~--------- 98 (151)
T PF03713_consen 28 DPEVRALAQQIIAAQQAEIAQMQAWLQSWGGPPPSPPMHATAGMDAMGAAMPGMMSDMMMAMLRAASGADF--------- 98 (151)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHCT--SS-SST-------HHHHHHTT---HHHHHHHHHS-HHHH---------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhccccccccccchhhhHhhhhhhhHHHHHHHhhccCchH---------
Q ss_pred hHHHHHHHhhccchhhhhhccccccCCCHHHHHHHHhHHHhhhhhHHHHHHHH
Q 037861 111 SINYLIASYLNPYVGLTGYVGANPNLQDAVSQRLAAGLLGVKSGQDAIIRTLL 163 (273)
Q Consensus 111 ~~~FL~~A~~~E~VGvsAY~Gaap~l~~~~~l~~AA~Il~VEA~Haa~IR~lL 163 (273)
+..||..=-.==.-++.--.-....=+|+.++++|-.|.......=..+|.+|
T Consensus 99 D~~Fl~~Mi~HHqgAi~MA~~~l~~g~~~~~~~lA~~ii~~Q~~EI~~m~~~L 151 (151)
T PF03713_consen 99 DRDFLQLMIPHHQGAIDMARAELKYGKDPEVRELAQDIIASQTAEIEQMRAWL 151 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--SHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Done!