Query 037863
Match_columns 672
No_of_seqs 137 out of 598
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 05:06:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037863.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037863hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00733 putative oligopeptid 100.0 5E-112 1E-116 962.0 49.2 551 39-657 1-590 (591)
2 PF03169 OPT: OPT oligopeptide 100.0 1.8E-96 4E-101 848.6 49.5 592 39-656 1-623 (624)
3 TIGR00728 OPT_sfam oligopeptid 100.0 1.4E-91 3.1E-96 810.7 36.6 581 36-654 13-649 (654)
4 COG1297 Predicted membrane pro 100.0 6.6E-91 1.4E-95 759.0 33.1 561 36-659 11-616 (624)
5 TIGR00727 ISP4_OPT small oligo 100.0 2.7E-65 5.8E-70 585.1 44.5 575 35-654 19-671 (681)
6 KOG2262 Sexual differentiation 100.0 3E-44 6.5E-49 395.8 26.1 572 38-655 69-722 (761)
7 PF03169 OPT: OPT oligopeptide 96.7 0.082 1.8E-06 62.2 18.7 133 165-339 475-621 (624)
8 TIGR00733 putative oligopeptid 94.9 2.1 4.5E-05 50.4 20.0 227 416-655 4-267 (591)
9 TIGR00728 OPT_sfam oligopeptid 59.8 48 0.001 39.6 10.1 63 260-337 581-647 (654)
10 PF11674 DUF3270: Protein of u 46.7 31 0.00066 30.8 4.2 52 38-92 37-89 (90)
11 COG1346 LrgB Putative effector 43.0 52 0.0011 34.2 5.8 72 501-579 87-164 (230)
12 KOG2927 Membrane component of 36.7 56 0.0012 36.0 5.1 33 38-93 184-216 (372)
13 PF13807 GNVR: G-rich domain o 36.4 51 0.0011 28.2 4.0 27 31-57 52-78 (82)
14 KOG0224 Aquaporin (major intri 33.8 1.2E+02 0.0026 32.9 6.9 53 498-550 105-172 (316)
15 KOG2927 Membrane component of 31.3 40 0.00087 37.0 3.0 49 388-436 188-240 (372)
16 TIGR00267 conserved hypothetic 30.1 73 0.0016 31.4 4.4 43 47-90 97-139 (169)
17 PF11449 DUF2899: Protein of u 27.3 1.4E+02 0.003 32.4 6.1 56 463-524 236-298 (298)
18 PF11239 DUF3040: Protein of u 27.2 1E+02 0.0022 26.6 4.3 24 3-26 7-30 (82)
19 PRK10711 hypothetical protein; 26.3 1.4E+02 0.0031 31.1 5.9 72 501-579 85-162 (231)
20 PF02084 Bindin: Bindin; Inte 25.6 30 0.00064 35.7 0.8 12 1-12 160-171 (238)
21 PF11044 TMEMspv1-c74-12: Plec 24.3 42 0.0009 26.0 1.1 13 3-15 35-47 (49)
22 TIGR00659 conserved hypothetic 24.2 2E+02 0.0042 30.0 6.4 77 501-579 84-161 (226)
23 PLN02806 complex I subunit 22.5 84 0.0018 27.3 2.8 35 70-108 3-37 (81)
24 PF03594 BenE: Benzoate membra 21.7 1E+03 0.022 26.8 11.6 48 496-548 33-80 (378)
25 PF10669 Phage_Gp23: Protein g 21.6 27 0.00058 31.4 -0.4 16 1-16 48-63 (121)
26 COG1297 Predicted membrane pro 20.5 1.4E+03 0.029 27.4 12.6 68 260-338 542-610 (624)
No 1
>TIGR00733 putative oligopeptide transporter, OPT family. This protein represents a small family of integral membrane proteins from Gram-negative bacteria, a Gram-positive bacteria, and an archaeal species. Members of this family contain 15 to 18 GES predicted transmembrane regions, and this family has extensive homology to a family of yeast tetrapeptide transporters, including isp4 (Schizosaccharomyces pombe) and Opt1 (Candida albicans). EspB, an apparent equivalog from Myxococcus xanthus, shares an operon with a two component system regulatory protein, and is required for the normal timing of sporulation after the aggregation of cells. This is consistent with a role in transporting oligopeptides as signals across the membrane.
Probab=100.00 E-value=5.5e-112 Score=962.04 Aligned_cols=551 Identities=18% Similarity=0.267 Sum_probs=440.6
Q ss_pred cchHHHHHHHHHHHHHHHHhhheeeecccccccchhHHHHHHHHHHHHHHHHhhhcCCCCCCCCcchhHHHHHHHhhhhh
Q 037863 39 QITIRGLVVSILLGIVYSVIVMKLNLTTGLVPQLNVSAALLAFLIIRSWTKVLQRAGYVTRPFTKQENTMIQTCAVACYS 118 (672)
Q Consensus 39 qlT~RavvvG~~lg~l~~asnlylGLk~G~t~~~si~aailgf~ilk~~~~~l~~~~i~~~pft~~ENnivQT~AsA~g~ 118 (672)
|+|+||+++|+++|+++|++|+|+|||+|||+++|||+|+|||+++|.++| +||+|||++||+|||+++
T Consensus 1 elT~Ravi~G~~lg~l~~asn~YlgLk~G~t~~~sI~aAil~~~ilr~~~~-----------~t~~EnnivQT~asA~~~ 69 (591)
T TIGR00733 1 EYTVRGFILGALITIIFTAANVYLGLYVGMTFAASIPAAVISMAVLMAFRD-----------RSILENNMVQTAASAAGT 69 (591)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHhcc-----------CChhHHHHHHHHHHHHHH
Confidence 699999999999999999999999999999999999999999999998543 599999999999999999
Q ss_pred hccchhhhHHHhhhhHHHHhhhCCCCCCCCcccccCCchHHHHHHHHHHHHHhhHhHHhhhhhhhccCCcCChhhHHHHH
Q 037863 119 IAVGGGFGSYLLGLSRKIYELSGEDTEGNSRRAIKEPGLGWMIGYLFVVCFVGLFVLIPLRKIVIVDLKLTYPSGLATAV 198 (672)
Q Consensus 119 ~~~~~gf~~~ipAm~~l~~~ll~~~~~g~~~~~~~~~~~g~~~~~~~~~~~lGv~favPLRr~~Iv~~~L~FPsGtAtA~ 198 (672)
++ |++..+|||+++ + +|+++++++++.|+++++++||+|++||||+||+||||+|||||||||
T Consensus 70 ~a---g~~~~lPAl~~l-----g---------~~~~~~~~~~~~~~~~gg~lGvlf~iPLRr~~I~~~~L~fP~G~A~Ae 132 (591)
T TIGR00733 70 LS---SVIFVLPALLML-----G---------YWTEFPYWITTVICALGGSLGVLFTIPLRRAFVVESKLPYPEGVACAE 132 (591)
T ss_pred HH---HHHHHHHHHHhc-----C---------ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCHHHHHH
Confidence 86 688999998654 2 123567888999999999999999999999999999999999999999
Q ss_pred HHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccCCCccccccccccc------ccceeeeeccccchhccee
Q 037863 199 LINGFHSQGDQMAKKQVRGFMKYFSISFLWGFFQWFYSGKQSCGFKQFPTFGLQA------WKQTFYFDFSMTYVGAGMI 272 (672)
Q Consensus 199 ~I~~~h~~g~~~a~~~~~~L~~~f~~s~~~~~~~~~~~~g~~~~~~~~~~~g~~~------~~~~~~~~~spa~iG~G~i 272 (672)
+|++.+ +|+ .++|.|.|..++..|++|+++.- ++.+| .+.+. ..++|++|+||+|+|+|||
T Consensus 133 ~l~~g~-~g~--~~~~~~~l~~g~~~s~~~~~~~~---------~~~~~-~~~~~~~~~g~~~~~~~~~~SpalvG~G~i 199 (591)
T TIGR00733 133 VLKAGD-KAR--NGTGAKPIAYGGILASIYAFLGS---------LRVWS-GTLSAAKLVGRRALYFGSDLSLALIGVGYL 199 (591)
T ss_pred HHHccc-ccc--chhhHHHHHHHHHHHHHHHHHHH---------hccCC-chHHHHHhcCCcceEEEecccHHHHcCcee
Confidence 999754 222 35678889988888888877631 12222 11111 1358899999999999999
Q ss_pred cchhHHHHHHHHHHHHhhhhhhhhhhccCcccCCCCCcchh-hhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037863 273 CSHLVNLSLLLGAVLSYGIMWPLIDRLKGHWFSESLKESDM-KSLYG-YKVFLSVALILGDGLYNFLKILSLTVINIYGT 350 (672)
Q Consensus 273 vG~~v~~Sml~GailaWgil~P~l~~~~g~w~~~~~~~~~~-~g~~~-y~v~ig~~~m~~~gl~~l~~~~~~~~~~~~~~ 350 (672)
||+++++|||+|++++|++++|++.++ +|+|++.++++. ..+|+ |.+|+|+++|++||+++++++.++.++++++.
T Consensus 200 vG~~v~~s~~~G~vlaWgvl~P~l~~~--~~~~~~~~~~~~~~~vw~~~vR~iGvg~m~~~gl~~l~~~~~~~~~~~~~~ 277 (591)
T TIGR00733 200 VGLNIGFAMFLGGAIAWGVAIPIYTAK--MGSPGDLSALDLAWTIWSTKVRYIGVGAIVVAALWTLLKLRGPIARGIKAG 277 (591)
T ss_pred eChHHHHHHHHHHHHHHHHHHHHHHhc--CCCCCCccHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999865 477766554322 33554 34469999999999999999988888888877
Q ss_pred hhhcccccccccccccccccCccccccccchhhcCCChhHHHHHHHHHHHHHHHHhhccccC----chhHHHH----HHH
Q 037863 351 IKTKNLNAGQLRSLKSFSTYKSLEDLKHNEIFLRENIPMWIGVAGYLVFSILSIIVIPIMFP----QLKWYYV----VIA 422 (672)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~glv~~~~i~~~~~~~~f~----~~~~~~~----lla 422 (672)
.+.++++ + +.+|.+|+ ++|+|.|+...++++ .++. +....|. +.+++++ +++
T Consensus 278 ~~~~~~~--~-----------~~~~~~r~----~~dip~~~v~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~la 337 (591)
T TIGR00733 278 LEAARRR--Q-----------AGEAVLRT----EEDLPINIVLTLVAL-FVIP--LADFLLYAPILHNIGMAIAVMAVLM 337 (591)
T ss_pred HHHhccc--c-----------cccccccc----cccccHHHHHHHHHH-HHHH--HHHHhcCCcccchhhHHHHHHHHHH
Confidence 6654321 1 00122333 567898865444332 2222 2222331 1233444 444
Q ss_pred HHHHHHhhhhhccccce--eccCccchhhHHHHHHHHHHh--------C--CCchhHHHHHhhHHHHHHHHHHHHhhhhh
Q 037863 423 YILAPSLSFCNAYGAGL--TDINMAYNYGKVALFVLAALS--------G--RENGLVAGMVGCGLVKSVVSVACILMQDF 490 (672)
Q Consensus 423 ~~la~v~s~~~~~~~G~--Td~np~~~~gkisqli~g~~~--------g--~~~~~~anL~~~~i~~~~a~qA~dl~qDl 490 (672)
++++|+++.+.+|++|+ ||+||+++++|++|++++.+. + .|+++.+||++|+++|++++||+|+||||
T Consensus 338 ~vl~f~~a~v~g~~~G~iGts~nPvsg~~~~t~l~~a~~~~~~g~~~~~~~~~~~v~~~L~~g~vv~~aa~~AgD~mqDl 417 (591)
T TIGR00733 338 LIIGFFVAAIAGYMAGLVGSSNSPISGIGIMSVLFTALILKGLGLSGTGSQIPELMAATIFTAAVVCTAAAISNDNLQDL 417 (591)
T ss_pred HHHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHHHHhcCcccCccccchhHHHHHHHHHHHHHHHHHHHHHhHhh
Confidence 44444544455566679 889999999999999999997 1 15889999999999999999999999999
Q ss_pred hhhhhcCCChhHHHHHHHHHHHHhHhHHHHHHHHhhhhccCCC-----CCCCCCchHHHHHHHHHHhhhcCCCCCchhhH
Q 037863 491 KTAHCTYTSPRAMFLNQVIGTAIGCVVAPISFLLFYKAFDVGN-----PHGEFKAPYALIYRNMAVIGVQGFSALPQHCL 565 (672)
Q Consensus 491 KtG~LlgasPr~qf~aQliG~~vga~v~~~v~~L~~~aY~i~~-----p~~~~~aP~a~~~~~vA~l~~~G~~~LP~~~l 565 (672)
|||||+|+|||+||++|++|+++||++++++|++|+++|++++ |+++||||||.+|+++++-..+| .+|+.
T Consensus 418 KtG~LlGatPr~Q~~aq~iG~~vg~~v~~~v~~ll~~ayg~~~~~~~~~~~~l~APqA~l~~ava~gi~~~--~l~~~-- 493 (591)
T TIGR00733 418 KTGYLVGATPWRQQVALIIGTFVGALVMAPVLNLLIKAYGIAGTPTAKGENALPAPQAFLMAAVTEGVFTG--TLEWT-- 493 (591)
T ss_pred HhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccccCCCHHHHHHHHHhhhcCC--CccHH--
Confidence 9999999999999999999999999999999999999999854 56789999999999998544332 34433
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccccccchhhhhcccccchhhhHHHHHHHHHHHHHHHhcCccc------cccchhhhh
Q 037863 566 QLCYGLFASAVAVNLVRDFSPEKIGKWMPLPMVMALPFLVGAYFAIDMCVGSLVVYLWHKRNPKK------AELMIPAVA 639 (672)
Q Consensus 566 ~~~~v~~~~~~~~~~~~~~~~~~~~~~iPs~~a~gig~~lp~~~s~~~~iG~li~~~~~r~~~~~------~~~~~~~vA 639 (672)
+.++.+++++++.++|++++||+++|-++++++|+|||+|++++++|++|++++|+|+|+++++ .+++++++|
T Consensus 494 -~i~~ga~~g~~l~~~~~~~~~~~~~~~~p~lavgig~yLP~~~s~~~~iG~li~~~~~r~~~~~~~~~~~~~~~g~~vA 572 (591)
T TIGR00733 494 -MVFIGAGIGIALIIIDEILAKRGSKFRTPVMAVGVGIYLPLSLGVPILLGAFLARILVSRGRKEGESFTDKKRLGVLGA 572 (591)
T ss_pred -HHHHHHHHHHHHHHHHHHhhhcccccCCchhHHHHHhhcchhHHHHHHHHHHHHHHHHHhcccccchhhhhhceeeEEe
Confidence 2233455677888999988876666644499999999999999999999999999999986532 247899999
Q ss_pred hhhhhchhhhHHHHHHHH
Q 037863 640 SGLICGEGLWTLPASILA 657 (672)
Q Consensus 640 sGLIaGegl~gvv~a~L~ 657 (672)
||||||||++||++|++.
T Consensus 573 SGLIaGE~l~Gv~~A~~~ 590 (591)
T TIGR00733 573 AGLIVGESLTGVVFAAII 590 (591)
T ss_pred cHhhcchHHHHHHHHHHh
Confidence 999999999999999874
No 2
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=100.00 E-value=1.8e-96 Score=848.56 Aligned_cols=592 Identities=28% Similarity=0.399 Sum_probs=501.8
Q ss_pred cchHHHHHHHHHHHHHHHHhhheeeecccccccchhHHHHHHHHHHHHHHHHhhhcCCCCCCCCcchhHHHHHHHhhhhh
Q 037863 39 QITIRGLVVSILLGIVYSVIVMKLNLTTGLVPQLNVSAALLAFLIIRSWTKVLQRAGYVTRPFTKQENTMIQTCAVACYS 118 (672)
Q Consensus 39 qlT~RavvvG~~lg~l~~asnlylGLk~G~t~~~si~aailgf~ilk~~~~~l~~~~i~~~pft~~ENnivQT~AsA~g~ 118 (672)
|+|+|++++|+++|++++++|+|++||+|+++.+++++++++|++.|.++|...|..+.++|||++|||++||+|+++++
T Consensus 1 ~lT~Ra~~lG~~~~~l~a~~n~y~~lk~g~~~~~si~~~il~~~~~~~~~~~~~~~~ln~gp~~~kE~~~vq~~asa~~~ 80 (624)
T PF03169_consen 1 QLTFRAVLLGILLGILGAAINQYFGLKTGWISIASIFAAILSFPIGRLLARIGWRFSLNPGPFTIKENNLVQTMASAAGG 80 (624)
T ss_pred CeeHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHhhccccccCCCCCCHHHHHHHHHHHHHhhh
Confidence 79999999999999999999999999999999999999999999999999876778888999999999999999999999
Q ss_pred hccchhhhHHHhhhhHHHHhhhCCCCCCCCcccccCCchHHHHHHHHHHHHHhhHhHHhhhhhhhccCCcCChhhHHHHH
Q 037863 119 IAVGGGFGSYLLGLSRKIYELSGEDTEGNSRRAIKEPGLGWMIGYLFVVCFVGLFVLIPLRKIVIVDLKLTYPSGLATAV 198 (672)
Q Consensus 119 ~~~~~gf~~~ipAm~~l~~~ll~~~~~g~~~~~~~~~~~g~~~~~~~~~~~lGv~favPLRr~~Iv~~~L~FPsGtAtA~ 198 (672)
++.++++++.+|+++++ + ++++++++++|++.++++|++|+.||||++|.+++|+||+++|||+
T Consensus 81 ~~~a~~~i~~ipa~~~~-----~-----------~~~~~~~~~l~~~~~~~lG~~~a~~lR~~lV~~~~l~fP~~~a~a~ 144 (624)
T PF03169_consen 81 MAYAAGFIAAIPALLFL-----G-----------QPFSFGYLILWTLSTQLLGYGFAGPLRRFLVYPEKLPFPSGLATAE 144 (624)
T ss_pred hhhhhhHHHHHHHHHHh-----c-----------cchhHHHHHHHHHHHHHHHHhhheeccccEEecccccCcchhHHHH
Confidence 88889999999998654 2 2346788999999999999999999999999999999999999999
Q ss_pred HHhcccc-cchHHHHHHHHHHHHHHHHHHHHHHH-HHhhcCcc----CCCc-ccccccccccccceeeeeccccchhcce
Q 037863 199 LINGFHS-QGDQMAKKQVRGFMKYFSISFLWGFF-QWFYSGKQ----SCGF-KQFPTFGLQAWKQTFYFDFSMTYVGAGM 271 (672)
Q Consensus 199 ~I~~~h~-~g~~~a~~~~~~L~~~f~~s~~~~~~-~~~~~~g~----~~~~-~~~~~~g~~~~~~~~~~~~spa~iG~G~ 271 (672)
+|+++|+ +|.+.+++|.|.+.++|.++++|.++ .++++.-. .|.. ++.+..+....+++|++||||+++|.|+
T Consensus 145 ~i~alh~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~w~~~~~~~~~~~~~~~~~~~dws~~~~g~g~ 224 (624)
T PF03169_consen 145 LINALHSGGGWREAKSRAKFFGIAFLGSFIYYWLPQYIFPALSSFSWPCWIAPNNPWLNNLFGGWSFSFDWSPILIGSGL 224 (624)
T ss_pred HHHHhccCccchhhhhhHhHHHHHHHHHHHHHHHHHHHHhhhcccccceeeccccchHhhhcccceeeEeecHHhcCCCe
Confidence 9999998 44577899999999999999999983 44444211 1111 1122223333457899999999999999
Q ss_pred ecchhHHHHHHHHHHHHhhhhhhhhhhccCcccCCCCC---------cchhhhhhhhHHHHHHHHHHHHHHHHH------
Q 037863 272 ICSHLVNLSLLLGAVLSYGIMWPLIDRLKGHWFSESLK---------ESDMKSLYGYKVFLSVALILGDGLYNF------ 336 (672)
Q Consensus 272 ivG~~v~~Sml~GailaWgil~P~l~~~~g~w~~~~~~---------~~~~~g~~~y~v~ig~~~m~~~gl~~l------ 336 (672)
++|+++++++++|++++|+++.|++.++++.|.+.+.+ ....++..+|..|++.++|..++++.+
T Consensus 225 i~p~~~~ls~~~G~v~~w~ii~P~l~~~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~ 304 (624)
T PF03169_consen 225 IVPLWAQLSMFLGAVLAWGIIIPILYYSGNAWGGAYLPFNSNSLFDNNGSSDGTLNWTKYIGYGPMYGSGLFALSYGWSF 304 (624)
T ss_pred eccHHHHHHHHHHHHHHHHhcCCeeeeeccccCCccccccchhhhhhcCccccccCHHHHHHHHHHHHhHHHHHhhcccc
Confidence 99999999999999999999999998876666544332 011245668999999999999999998
Q ss_pred HHHHHHHHHHHHHHhhhcccccccccccccccccCccccccccchhhcCCChhHHHHHHHHHHHHHHHHhhcccc--Cch
Q 037863 337 LKILSLTVINIYGTIKTKNLNAGQLRSLKSFSTYKSLEDLKHNEIFLRENIPMWIGVAGYLVFSILSIIVIPIMF--PQL 414 (672)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~glv~~~~i~~~~~~~~f--~~~ 414 (672)
.++...+...++...+.......+..+ +.++..++.||.++++...++|+|.||++.+++++.++++++++..+ .++
T Consensus 305 ~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~vP~ww~~~~~~~~~v~~~~~~~~~~~~~~~ 383 (624)
T PF03169_consen 305 AALTASIVHAILWHWKAIWQAFKQSKS-SQRSSKSSEDDPHYRLMRTYKEVPMWWYLAGLVVSFVLAIIVVEAWFGQTQM 383 (624)
T ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhcc-cccccccccCCchhhhhhhcCCcchHHHHHHHHHHHHHHHHHHhhhhcccCC
Confidence 555555544444333322110000000 00000223455555566679999999999999988888888888888 478
Q ss_pred hHHHHHHHHHHHHHhhhhhccccceeccCccchhhHHHHHHHHHHhCCCchhHHHHHhhHHHHHHHHHHHHhhhhhhhhh
Q 037863 415 KWYYVVIAYILAPSLSFCNAYGAGLTDINMAYNYGKVALFVLAALSGRENGLVAGMVGCGLVKSVVSVACILMQDFKTAH 494 (672)
Q Consensus 415 ~~~~~lla~~la~v~s~~~~~~~G~Td~np~~~~gkisqli~g~~~g~~~~~~anL~~~~i~~~~a~qA~dl~qDlKtG~ 494 (672)
|+|..+++++++++++++++|++|+||+||.++++|++|+++|++. |+++.+||+++++++++++||+|++|||||||
T Consensus 384 p~~~~ilai~la~v~~~~~~~~~g~t~~~P~~~~~~~sqli~g~~~--pg~~~a~l~~~~~~~~~~~qa~~~~~DlK~G~ 461 (624)
T PF03169_consen 384 PWWGLILAILLAFVFSIPSGRITGETGINPVSGLNILSQLIFGLLL--PGNPIANLLFGGYGYAAASQAGDLMQDLKTGH 461 (624)
T ss_pred chhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhhHHHHHHHHHHH--hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred hcCCChhHHHHHHHHHHHHhHhHHHHHHHHhhhhccCCCC---CCCCCchHHHHHHHHHHhhhcCCCCCchhhHHHHHHH
Q 037863 495 CTYTSPRAMFLNQVIGTAIGCVVAPISFLLFYKAFDVGNP---HGEFKAPYALIYRNMAVIGVQGFSALPQHCLQLCYGL 571 (672)
Q Consensus 495 LlgasPr~qf~aQliG~~vga~v~~~v~~L~~~aY~i~~p---~~~~~aP~a~~~~~vA~l~~~G~~~LP~~~l~~~~v~ 571 (672)
|+|+|||+||++|++|+++|++++++++.+++++|.++++ ++++|+|++..|++++....+|..++|++.+.++++.
T Consensus 462 ~l~~~Pr~~f~~Q~iG~~ig~~v~~~v~~l~~~~~~~~~~~~~~~~~~ap~a~~~aav~~g~~~~~~~~~~~~~~~~~~~ 541 (624)
T PF03169_consen 462 YLGIPPRAQFYAQIIGTIIGAFVAVAVMRLLNQAYPCGPDQGDSFSCPAPQAFAWAAVAWGLIGPQRGLPYSALPWGFLI 541 (624)
T ss_pred HHCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccCcCcchHHHHHHHHHHHhcCCcccchHHHHHHHHHH
Confidence 9999999999999999999999999999999999987643 5789999999999999987776568999999997776
Q ss_pred HHHHHHHHHHhhhcccccccccchhhhhc----ccccchhhhHHHHHHHHHHHHHHHhcCccccccchhhhhhhhhhchh
Q 037863 572 FASAVAVNLVRDFSPEKIGKWMPLPMVMA----LPFLVGAYFAIDMCVGSLVVYLWHKRNPKKAELMIPAVASGLICGEG 647 (672)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~iPs~~a~g----ig~~lp~~~s~~~~iG~li~~~~~r~~~~~~~~~~~~vAsGLIaGeg 647 (672)
+++..++..++ +|++|++++++ +++|+|+++++++++|+++.++||||+++|+++|++++||||||||+
T Consensus 542 G~~~~i~~~l~-------~~~~P~~~~~~~~~~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~y~~~laagl~aG~~ 614 (624)
T PF03169_consen 542 GAVLPILFWLL-------QRKFPSPLAFGGASSIGFYLPSNYTSAIFIGGLFQFYWRRRYPKWWEKYNYVLAAGLIAGEA 614 (624)
T ss_pred HHHHHHHHHHH-------HhhCChhheeeecccccccchhHHHHHHHHHHHHHHHhhhcchhHHHhHhhHHHHHHHHHHH
Confidence 65555555444 45699889999 99999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHH
Q 037863 648 LWTLPASIL 656 (672)
Q Consensus 648 l~gvv~a~L 656 (672)
|+|++++++
T Consensus 615 l~~li~~~~ 623 (624)
T PF03169_consen 615 LMGLIIAFL 623 (624)
T ss_pred HHHHHHHHh
Confidence 999999875
No 3
>TIGR00728 OPT_sfam oligopeptide transporters, OPT superfamily. Homology between the two branches of the superfamily is seen most easily at the ends of the protein. The central regions are poorly conserved within each branch and may not be homologous between branches.
Probab=100.00 E-value=1.4e-91 Score=810.72 Aligned_cols=581 Identities=30% Similarity=0.444 Sum_probs=470.7
Q ss_pred CCccchHHHHHHHHHHHHHHHHhhheeeecccccccchhHHHHHHHHHHHHHHHHhhh-----cCCCCCCCCcchhHHHH
Q 037863 36 WTKQITIRGLVVSILLGIVYSVIVMKLNLTTGLVPQLNVSAALLAFLIIRSWTKVLQR-----AGYVTRPFTKQENTMIQ 110 (672)
Q Consensus 36 ~~~qlT~RavvvG~~lg~l~~asnlylGLk~G~t~~~si~aailgf~ilk~~~~~l~~-----~~i~~~pft~~ENnivQ 110 (672)
..+++|+|++++|++++++++++|+|+|||+|+++.+|+++++++|.+.|.+.|.+++ ..+..+|||++|||++|
T Consensus 13 ~~~~~T~Ra~~lG~i~~~v~~~~n~~~~lr~g~~~~~si~~~ll~~~~g~~~~~~lP~~~~~~~~lnpgpft~kE~~~iq 92 (654)
T TIGR00728 13 SLPVITFRAWFLGILIGVVFAGVNQFFGLRTGSVSISSIVAALLAYPLGKLWALIIPDWEGWKFSLNPGPFNVKENNLIQ 92 (654)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHhcCCccccceecCCCCCChhhheeEE
Confidence 3468999999999999999999999999999999999999999999999999998853 34445899999999999
Q ss_pred HHHhhhhhhccchhhhHHHhhhhHHHHhhhCCCCCCCCcccccCCchHH--HHHHHHHHHHHhhHhHHhhhhhhhccCCc
Q 037863 111 TCAVACYSIAVGGGFGSYLLGLSRKIYELSGEDTEGNSRRAIKEPGLGW--MIGYLFVVCFVGLFVLIPLRKIVIVDLKL 188 (672)
Q Consensus 111 T~AsA~g~~~~~~gf~~~ipAm~~l~~~ll~~~~~g~~~~~~~~~~~g~--~~~~~~~~~~lGv~favPLRr~~Iv~~~L 188 (672)
|+|+++++++. + +..|||++.. | +. +.++++ +++|+..+|++|++|+.||||++|.+++|
T Consensus 93 ~~asa~~~~~~--~-~~~i~a~~~~-~---~~-----------~~~~~~~~l~~~~~~~~~lG~~~a~~lRr~lV~~~~l 154 (654)
T TIGR00728 93 TAASACGGLAY--A-IFILPAQKMF-Y---TS-----------NFSWGYQILLVWSTQLGFLGFGFAGLLRRALVVPAKL 154 (654)
T ss_pred eeeeccccHHH--H-HHHHHHHHHH-c---CC-----------CCCHHHHHHHHHHHHHHHhHHhhHHHhhhheeCcccc
Confidence 99999998763 3 7899998654 1 21 113344 67888889999999999999999999999
Q ss_pred CChhhHHHHHHHhcc----cc-cchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccCCCcccccccc-cccccceeeeec
Q 037863 189 TYPSGLATAVLINGF----HS-QGDQMAKKQVRGFMKYFSISFLWGFFQWFYSGKQSCGFKQFPTFG-LQAWKQTFYFDF 262 (672)
Q Consensus 189 ~FPsGtAtA~~I~~~----h~-~g~~~a~~~~~~L~~~f~~s~~~~~~~~~~~~g~~~~~~~~~~~g-~~~~~~~~~~~~ 262 (672)
+||||+|||+++|++ |. +|.+.+|.+...+.+.|..++.|+.++|+++. +..++.+| +...+++|.+|+
T Consensus 155 ~~P~~la~a~l~~al~~~~~~~~g~~~~r~l~~~~~~~f~~~~~~~~~~~~~p~-----~~~~~~fgglg~~~~~f~w~~ 229 (654)
T TIGR00728 155 PWPSGLATAELFKALHGKFHTANGDTIAKNLLRVLLKYFSSSFLWSFVSWFFPG-----FTAFQTFGGLGSGSIGFGWQQ 229 (654)
T ss_pred cCCcccHHHHHHHHhhhccCccCCCccchhHHHhHHHHHHHHHHHHHHHHHhcC-----CccccccccccccccceecHH
Confidence 999999999999986 44 45455565556677889999999999998764 23345554 344557889999
Q ss_pred cccchhcceecchhHHHHHHHHHHHHhhhhhhhhhhccCcccCCCCCcchhhhhhhhHH-HHHHHHHHHHHHHHHHHHHH
Q 037863 263 SMTYVGAGMICSHLVNLSLLLGAVLSYGIMWPLIDRLKGHWFSESLKESDMKSLYGYKV-FLSVALILGDGLYNFLKILS 341 (672)
Q Consensus 263 spa~iG~G~ivG~~v~~Sml~GailaWgil~P~l~~~~g~w~~~~~~~~~~~g~~~y~v-~ig~~~m~~~gl~~l~~~~~ 341 (672)
||+++|+|+++|+++++++++|++++|+++.|++.++ +.|..+..+.++.+..++|.. |++++.|++|+++++.+...
T Consensus 230 s~~~~g~gli~p~~~~~~~~~G~vl~~~ii~P~l~~~-n~~~~~~~p~~s~~~~~~~~~~y~~~~~il~~~~~~l~~~~~ 308 (654)
T TIGR00728 230 SSAYIGSGLITPFTVGLNMLLGVILAFGIVLPILYYK-NTWPADADPIDSSSTIDSTGVRYNSVGLIVVDGLWTLVKPLY 308 (654)
T ss_pred hHhhcCCCccCCHHHHHHHHHHHHHHHHHHHHHHHhc-CccccccCCCcchhhhcCCCceeeeeeEEEeCCCceecHHHH
Confidence 9999999999999999999999999999999999876 344333233334467788877 99999999999887765544
Q ss_pred HHH-----------------------------HHHHHHhhhcccccccccccccccccCccccccccchhhcCCChhHHH
Q 037863 342 LTV-----------------------------INIYGTIKTKNLNAGQLRSLKSFSTYKSLEDLKHNEIFLRENIPMWIG 392 (672)
Q Consensus 342 ~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~ 392 (672)
+.. +...+++++.... .++. +.+ ..++.++.+...++++|.||+
T Consensus 309 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~--~~~----~~~~~~d~~~~~~~~vP~ww~ 381 (654)
T TIGR00728 309 PIYSPLVLSIDFYALLFNAFSDTIYSFALAHGRDIISARRDHYKL-GRDD--HVR----LLSRDEDLKVKNYKEVPAWWY 381 (654)
T ss_pred HHhCcceeeHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhc-cCCC--ChH----HHhhcccccccccCcCcHHHH
Confidence 322 1111111111100 0000 000 001111123445799999999
Q ss_pred HHHHHHHHHHHHHhhcccc--CchhHHHHHHHHHHHHHhhhhhccccceeccCccchhhHHHHHHHHHHhCCCchhHHHH
Q 037863 393 VAGYLVFSILSIIVIPIMF--PQLKWYYVVIAYILAPSLSFCNAYGAGLTDINMAYNYGKVALFVLAALSGRENGLVAGM 470 (672)
Q Consensus 393 ~~glv~~~~i~~~~~~~~f--~~~~~~~~lla~~la~v~s~~~~~~~G~Td~np~~~~gkisqli~g~~~g~~~~~~anL 470 (672)
+.+++++.+++++++++.+ .++|||.++++++++++|+++++|+.|+| ||.++++|++|+++|++. |+++.+||
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~p~w~~ilal~l~~i~~~~~~~~~g~t--np~~~l~~~~~li~g~~~--pg~~~a~l 457 (654)
T TIGR00728 382 LSLLLVSFGLGIVVVEYYFGITQLPWWGVIVALIIAFVLAIPIGILAGIT--NPVSGLNIITELIIGYIL--PGRPLANL 457 (654)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHHhhhheEEee--cccchhhHHHHHhheeec--CCcccHHH
Confidence 9999988898888888776 47899999999999999999999999999 999999999999999999 99999999
Q ss_pred HhhHHHHHHHHHHHHhhhhhhhhhhcCCChhHHHHHHHHHHHHhHhHHHHHHHHhhhhccCCCCCCCCCchHHHHHHHHH
Q 037863 471 VGCGLVKSVVSVACILMQDFKTAHCTYTSPRAMFLNQVIGTAIGCVVAPISFLLFYKAFDVGNPHGEFKAPYALIYRNMA 550 (672)
Q Consensus 471 ~~~~i~~~~a~qA~dl~qDlKtG~LlgasPr~qf~aQliG~~vga~v~~~v~~L~~~aY~i~~p~~~~~aP~a~~~~~vA 550 (672)
+++++++.+++||+|++||||+|||+|+|||+||++|++|+++|++++++++.++.++|+++ +++|+||++..|++.|
T Consensus 458 ~~~~~~~~~~~qA~~~~qDlK~G~y~~~pPR~~f~~Qiig~~vg~~v~~~v~~~~~~~~~~~--~~~~~~p~a~~~~~aa 535 (654)
T TIGR00728 458 AFKAYGFITAQQAGDFMQDLKTGHYMKAPPRAQFAAQLIGTIVGSLVNAPVLEWLYHAIGNQ--NNNFTCPNALVFYNAS 535 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC--CCCccCCcccchhhhe
Confidence 99999999999999999999999999999999999999999999999999999999999874 4689999999999999
Q ss_pred Hh-hhcC---CCC-CchhhHHHHHHHHHHHHHHHHHhhhcccccccccchhhhhcccccchhhhHHHHH----HHHHHHH
Q 037863 551 VI-GVQG---FSA-LPQHCLQLCYGLFASAVAVNLVRDFSPEKIGKWMPLPMVMALPFLVGAYFAIDMC----VGSLVVY 621 (672)
Q Consensus 551 ~l-~~~G---~~~-LP~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~iPs~~a~gig~~lp~~~s~~~~----iG~li~~ 621 (672)
++ ++.| .++ .+...+.|+++++++.++..+.++..|| +++|+|+++++|+++|+|++++++++ +|+++++
T Consensus 536 ~~~g~~Gp~~f~~~~~y~~~~~~~l~G~~~i~~~~~~~~~p~-~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~vG~~~~~ 614 (654)
T TIGR00728 536 LIWGVIGPKIFSGKGLYCGLMWFFLVGVGAVLVWLVRKLFPK-WIKYINPPVAVGGGGYIPPATAVNYSTWAAVGGFFNY 614 (654)
T ss_pred eeeccccchhcCCCCccHHHHHHHHHHHHHHHHHHHHHHccc-hhhhcCHHHhhhhhhccCCcchhhhhHHHHHHHHHHH
Confidence 87 5566 322 2334466666655333333344444443 67889999999999999999999999 9999999
Q ss_pred HHHhcCcccc--ccchhhhhhhhhhchhhhHHHHH
Q 037863 622 LWHKRNPKKA--ELMIPAVASGLICGEGLWTLPAS 654 (672)
Q Consensus 622 ~~~r~~~~~~--~~~~~~vAsGLIaGegl~gvv~a 654 (672)
+|+||+++++ ++|++++||||||||+|+||++-
T Consensus 615 ~~~rr~~~~~~~~~y~~~laagL~~G~al~gviif 649 (654)
T TIGR00728 615 RWRKNKRADWKAEKYNYVLAAGLIAGEALAGVIIF 649 (654)
T ss_pred HHHHhhhhhhhhhhhHHHHHHHHhhhHHHHHHHHH
Confidence 9999988765 89999999999999999999974
No 4
>COG1297 Predicted membrane protein [Function unknown]
Probab=100.00 E-value=6.6e-91 Score=759.02 Aligned_cols=561 Identities=19% Similarity=0.295 Sum_probs=432.6
Q ss_pred CCccchHHHHHHHHHHHHHHHHhhheeeecccccccchhHHHHHHHHHHHHHHHHhhhcCCCCCCCCcchhHHHHHHHhh
Q 037863 36 WTKQITIRGLVVSILLGIVYSVIVMKLNLTTGLVPQLNVSAALLAFLIIRSWTKVLQRAGYVTRPFTKQENTMIQTCAVA 115 (672)
Q Consensus 36 ~~~qlT~RavvvG~~lg~l~~asnlylGLk~G~t~~~si~aailgf~ilk~~~~~l~~~~i~~~pft~~ENnivQT~AsA 115 (672)
..+|+|+|++++|+++++++.++|+|+|||+|+|+++|||+|++||+++|.++ +++++|||+|||+|||
T Consensus 11 ~l~elTlr~vIlGilitvi~~aaN~yLGL~vGlT~a~SIPAAVISmavlk~~~-----------~~silENNmVQT~ASA 79 (624)
T COG1297 11 FLPELTLRGVILGILITVIFLAANVYLGLKVGLTFASSIPAAVISMAVLKAFK-----------GSSILENNMVQTQASA 79 (624)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHhhhheecceehhhhHHHHHHHHHHHHhC-----------ccchhhhHHHHHHHhh
Confidence 56799999999999999999999999999999999999999999999999855 4589999999999999
Q ss_pred hhhhccchhhhHHHhhhhHHHHhhhCCCCCCCCcccccCCchHHHHHHHHHHHHHhhHhHHhhhhhhhccCCcCChhhHH
Q 037863 116 CYSIAVGGGFGSYLLGLSRKIYELSGEDTEGNSRRAIKEPGLGWMIGYLFVVCFVGLFVLIPLRKIVIVDLKLTYPSGLA 195 (672)
Q Consensus 116 ~g~~~~~~gf~~~ipAm~~l~~~ll~~~~~g~~~~~~~~~~~g~~~~~~~~~~~lGv~favPLRr~~Iv~~~L~FPsGtA 195 (672)
+|+++ +|+.-.+|++.++ .+|++++|+++..++.++|++||+|++||||+||+++|||||||+|
T Consensus 80 agtls--a~vIFviPgl~m~--------------g~w~~fpf~~t~~i~~lggiLGvlftiPLRra~Iv~skLPyPeGvA 143 (624)
T COG1297 80 AGTLS--AGVIFVLPGLLML--------------GYWSGFPFWQTAIICALGGILGVLFTIPLRRAMIVESKLPYPEGVA 143 (624)
T ss_pred hcccc--ccEEEechhHHhh--------------ccccCCcHHHHHHHHHHHhhcceEEEEEeeeeeeccCCCCCCCchh
Confidence 99988 5566678887554 2588899977777888999999999999999999999999999999
Q ss_pred HHHHHhcccc-cchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccC---CCcccccccccccccceeeeeccccchhcce
Q 037863 196 TAVLINGFHS-QGDQMAKKQVRGFMKYFSISFLWGFFQWFYSGKQS---CGFKQFPTFGLQAWKQTFYFDFSMTYVGAGM 271 (672)
Q Consensus 196 tA~~I~~~h~-~g~~~a~~~~~~L~~~f~~s~~~~~~~~~~~~g~~---~~~~~~~~~g~~~~~~~~~~~~spa~iG~G~ 271 (672)
|||+++.... +|+. +..+.+..+...+.++.++. .|.. ..++.....+..+ ..+..++||+++|+||
T Consensus 144 aAEvL~~g~~~~gd~---~g~~~i~~g~~~~~~~~~l~----~g~~~~~~~~~~~~~~~~~~--~~lg~~~S~AliG~Gy 214 (624)
T COG1297 144 AAEVLKAGNQREGDA---SGIKLIALGGALAALYSLLA----SGLRVIASSLSAAFSVGRAA--FALGLGLSLALIGAGY 214 (624)
T ss_pred HHHHHHhcCCCCCCc---ccchhhhhhhHHHHHHHHHh----ccceeehhhHHHHHHhcchh--hhhcccccHHHhCceE
Confidence 9999997753 4442 23344444444444444332 1100 0000000011111 3677899999999999
Q ss_pred ecchhHHHHHHHHHHHHhhhhhhhhhhccCcccCCCCCcchh-hhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037863 272 ICSHLVNLSLLLGAVLSYGIMWPLIDRLKGHWFSESLKESDM-KSLYG-YKVFLSVALILGDGLYNFLKILSLTVINIYG 349 (672)
Q Consensus 272 ivG~~v~~Sml~GailaWgil~P~l~~~~g~w~~~~~~~~~~-~g~~~-y~v~ig~~~m~~~gl~~l~~~~~~~~~~~~~ 349 (672)
|+|++++..||.|..++|+++.|++..+ .|-|++.+.... +.+|+ ...|+|++.|...++|++.++..++.+.++.
T Consensus 215 lvGl~~~iaml~G~~iaWgvavP~~~~~--~~~p~~~~~~~~a~~vW~s~VrfIGaG~i~i~~~wtl~~l~~pi~~gi~~ 292 (624)
T COG1297 215 LVGLPAGIAMLIGIFIAWGVAVPLLTLI--VPGPSDQEAGVQAWKVWSSKVRFIGAGAIAIAAIWTLISLLGPILRGIKA 292 (624)
T ss_pred EecchHHHHHHHHHHHHHHHHHHHHHhc--ccCCCchhHHHHHHHHhhheeEEeehhHHHHHHHHHHHHHHhHHHHHHHH
Confidence 9999999999999999999999999765 344543322211 44554 3349999999999999999999999988887
Q ss_pred HhhhcccccccccccccccccCccccccccchhhcCCChhHHHHHHHHHHHHHHHHh-hcccc-----CchhHHHHHH--
Q 037863 350 TIKTKNLNAGQLRSLKSFSTYKSLEDLKHNEIFLRENIPMWIGVAGYLVFSILSIIV-IPIMF-----PQLKWYYVVI-- 421 (672)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~glv~~~~i~~~~-~~~~f-----~~~~~~~~ll-- 421 (672)
..+..+.+ ++ . .+..|+ ++|+|..+....++. .++.+.+ ..+.. ....|+.+++
T Consensus 293 ~f~~~r~~-~~---------~---~~~~rt----e~Dl~~~~~~~~~~~-~~v~l~~~~~~~l~~~~~~~~~~~~~~~~~ 354 (624)
T COG1297 293 TFESARGR-RR---------A---GAVSRT----ERDLPPKLVLLVLLA-TVVALGLLLAHFLRGTPLSSCRWLLVVVMV 354 (624)
T ss_pred HHHHhhcc-cc---------c---ccccch----hhcCChhhHHHHHHH-HHHHHHHHHHhhhccCcccchhhHHHHHHH
Confidence 77654321 00 0 011144 346666665444433 2333222 22221 1134555444
Q ss_pred --HHHHHHHhhhhhccccceeccCccchhh--HHHHHHHHHHh---C-----------CCchhHHHHHhhHHHHHHHHHH
Q 037863 422 --AYILAPSLSFCNAYGAGLTDINMAYNYG--KVALFVLAALS---G-----------RENGLVAGMVGCGLVKSVVSVA 483 (672)
Q Consensus 422 --a~~la~v~s~~~~~~~G~Td~np~~~~g--kisqli~g~~~---g-----------~~~~~~anL~~~~i~~~~a~qA 483 (672)
++++.|.++-+..|++|+.+.+++|.+| .++.+..+.++ | +|..+.++++.+++++++|+++
T Consensus 355 ~i~~v~GflvaAv~gymagLVgSssspiSGi~i~~v~~~~l~~l~~G~~~~~~~~~~~~~~~~~~~~~t~~vv~a~A~is 434 (624)
T COG1297 355 LIAVVIGFLVAAVCGYMAGLVGSSSSPISGIGILSVTLLSLLILILGQSGGLFIDPLMRKFLVAATLFTASVVAAVAAIS 434 (624)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCcchHHHHHHHHHHHHHHHhccccccccCcccchhHHHHHHHHHHHHHHHHHhh
Confidence 4455555555556999999988777666 56666554444 3 1477799999999999999999
Q ss_pred HHhhhhhhhhhhcCCChhHHHHHHHHHHHHhHhHHHHHHHHhhhhccCCCC----CCCCCchHHHHHHHHHHhhhcCCCC
Q 037863 484 CILMQDFKTAHCTYTSPRAMFLNQVIGTAIGCVVAPISFLLFYKAFDVGNP----HGEFKAPYALIYRNMAVIGVQGFSA 559 (672)
Q Consensus 484 ~dl~qDlKtG~LlgasPr~qf~aQliG~~vga~v~~~v~~L~~~aY~i~~p----~~~~~aP~a~~~~~vA~l~~~G~~~ 559 (672)
+|++||||||||+|+|||+||.+|++|++++++++++++.+++++|++.++ +.++++|||.++..++ +|+
T Consensus 435 ~DnlQDLKTG~LvgATPwkQqvaliiG~~~~alvi~pvL~ll~~aYgf~ga~~r~~~~l~apqa~lma~ia----~Gv-- 508 (624)
T COG1297 435 NDNLQDLKTGYLVGATPWKQQVALIIGCFVGALVIAPVLELLNKAYGFAGAPPRQGMDLAAPQATLMATIA----KGV-- 508 (624)
T ss_pred ccchhhhhhCeeecCChHHHHHHHHHhHHhhhhhHHHHHHHHHHHhCcCCCCCCCCCCCcchHHHHHHHHh----ccc--
Confidence 999999999999999999999999999999999999999999999998742 2239999999998887 776
Q ss_pred CchhhHHHHHHHHHHHHHHH--HHhhhcccccccccchhhhhcccccchhhhHHHHHHHHHHHHHHHhcC-------ccc
Q 037863 560 LPQHCLQLCYGLFASAVAVN--LVRDFSPEKIGKWMPLPMVMALPFLVGAYFAIDMCVGSLVVYLWHKRN-------PKK 630 (672)
Q Consensus 560 LP~~~l~~~~v~~~~~~~~~--~~~~~~~~~~~~~iPs~~a~gig~~lp~~~s~~~~iG~li~~~~~r~~-------~~~ 630 (672)
+.++++|.++..++++.+. .+++.+++|+.++.+.++++|+|+|+|+++++++++|++++|.|+|+. +++
T Consensus 509 -f~~~lew~mi~~g~~~gi~lI~id~~l~~~~~~~~lpvlAvGvGIylP~s~~ipi~vG~~l~~~v~~~~~~~~~~~~e~ 587 (624)
T COG1297 509 -FTGNLEWSMILAGAGIGIVLIGIDERLKGRGGKLRLPVLAVGVGIYLPPSLTIPIFVGGVLRWAVDRKLKKGDERYKER 587 (624)
T ss_pred -CCCCcchHHHHHHHhHhheeeeccHHHhcCCccccccceeeeeeeecChhhchHHHHHHHHHHHHHHhcccccchhhhc
Confidence 8888888888887777776 456666667888855599999999999999999999999999999873 335
Q ss_pred cccchhhhhhhhhhchhhhHHHHHHHHHc
Q 037863 631 AELMIPAVASGLICGEGLWTLPASILALA 659 (672)
Q Consensus 631 ~~~~~~~vAsGLIaGegl~gvv~a~L~~~ 659 (672)
.++.++.+|||||+||+|+||+++.+...
T Consensus 588 ~~r~gvl~aaGLIvGEsL~gvi~a~ii~~ 616 (624)
T COG1297 588 AKRIGVLFAAGLIVGESLFGVITALIIVG 616 (624)
T ss_pred ccceeEEEeeccccchHHHHHHHHHHhee
Confidence 77899999999999999999999998875
No 5
>TIGR00727 ISP4_OPT small oligopeptide transporter, OPT family. This model represents a family of transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. A set of related proteins from the plant Arabidopsis thaliana forms an outgroup to the yeast set by neighbor joining analysis but is remarkably well conserved and is predicted here to have equivalent function.
Probab=100.00 E-value=2.7e-65 Score=585.08 Aligned_cols=575 Identities=16% Similarity=0.209 Sum_probs=436.6
Q ss_pred CCCccchHHHHHHHHHHHHHHHHhhheeeecccccccchhHHHHHHHHHHHHHHHHhhhcC---------CCCCCCCcch
Q 037863 35 PWTKQITIRGLVVSILLGIVYSVIVMKLNLTTGLVPQLNVSAALLAFLIIRSWTKVLQRAG---------YVTRPFTKQE 105 (672)
Q Consensus 35 ~~~~qlT~RavvvG~~lg~l~~asnlylGLk~G~t~~~si~aailgf~ilk~~~~~l~~~~---------i~~~pft~~E 105 (672)
++.++.|+|+.++|++++++.+++|++++||++.++..++++.+++|.+.|.|.|.+++.+ +-.+|||++|
T Consensus 19 p~~p~~TfRa~~lG~~l~~i~s~in~~f~lR~p~i~is~~~~qll~yp~Gk~~a~~lP~~~~~~~g~~~~lNPGPF~~KE 98 (681)
T TIGR00727 19 PTIPVNTIRAWFIGLIWSTVGSGFNMFFSHRVPSISLNTPIIQMLAYPCGKAWAKIIPDWTITIRGRKYNIIPGPFNVKE 98 (681)
T ss_pred CCCccccHHHHHHHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHHHHHHHHHHHHcCccccccccceeccCCCCCChhc
Confidence 3557899999999999999999999999999999999999999999999999999998654 3368999999
Q ss_pred hHHHHHHHhhhhhhccchhhhHHHhhhhHHHHhhhCCCCCCCCcccccCCchHHHHHHHHHHHHHhhHhHHhhhhhhhcc
Q 037863 106 NTMIQTCAVACYSIAVGGGFGSYLLGLSRKIYELSGEDTEGNSRRAIKEPGLGWMIGYLFVVCFVGLFVLIPLRKIVIVD 185 (672)
Q Consensus 106 NnivQT~AsA~g~~~~~~gf~~~ipAm~~l~~~ll~~~~~g~~~~~~~~~~~g~~~~~~~~~~~lGv~favPLRr~~Iv~ 185 (672)
|+++|++|+++.+.+.+ +..|++++.. | + ++++++++++++++..++|..++.|+||++|.+
T Consensus 99 h~liti~a~~~~~~~y~---~~~i~~~~~f-y---~-----------~~~~~g~~il~~lstq~~G~g~Ag~lRr~lV~p 160 (681)
T TIGR00727 99 HMFITLMYAVSFGAAYT---TDIILAQKLF-Y---K-----------SAFGFGYQFLLSLSTQFIGFGFAGILRRFVVYP 160 (681)
T ss_pred ceeeeeeeehhccHHHH---HHHHHHHHHH-h---C-----------CCCCHHHHHHHHHHHHHHHHHHHHHhhceEecc
Confidence 99999999998776543 5678887643 2 2 134678999999999999999999999999999
Q ss_pred CCcCChhhHHHHHHHhcccc-cchHHH---HHHHHHHHHHHHHHHHHHHH-HHhhcCcc----CCCc--ccccccccccc
Q 037863 186 LKLTYPSGLATAVLINGFHS-QGDQMA---KKQVRGFMKYFSISFLWGFF-QWFYSGKQ----SCGF--KQFPTFGLQAW 254 (672)
Q Consensus 186 ~~L~FPsGtAtA~~I~~~h~-~g~~~a---~~~~~~L~~~f~~s~~~~~~-~~~~~~g~----~~~~--~~~~~~g~~~~ 254 (672)
+|+.||++.+|+.++|++|+ ++.... +++.|.+.++|.++++|..+ .++++.-. .|.. ++...-.+...
T Consensus 161 ~~~iwPs~L~t~aL~~aLH~~~~~~~~gw~~sr~kfF~~~f~~sfvw~w~P~ylf~~Ls~f~w~cwi~P~n~~~~~i~g~ 240 (681)
T TIGR00727 161 ARALWPTNLVTITINKALHGKENHEANGWKISRYKFFFLVFFASFIWNWFPTYIFQALSTFNWMTWIKPNNINLNQIFGG 240 (681)
T ss_pred ccCcCCCccHHHHHHHHHhccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhccCcchhhhhhhcc
Confidence 99999999999999999998 333211 36789999999999998753 22333110 1211 11111011111
Q ss_pred cce------eeeeccccc--hhcceecchhHHHHHHHHHHHHhhhhhhhhhhccCcccCCCCC-----------------
Q 037863 255 KQT------FYFDFSMTY--VGAGMICSHLVNLSLLLGAVLSYGIMWPLIDRLKGHWFSESLK----------------- 309 (672)
Q Consensus 255 ~~~------~~~~~spa~--iG~G~ivG~~v~~Sml~GailaWgil~P~l~~~~g~w~~~~~~----------------- 309 (672)
+.| +.|||+..- +|..+++|..+.+..++|.++++.++.|.+.+. +.|+.+..|
T Consensus 241 ~~GlGl~p~~tfDW~~I~~~~~spL~~P~~a~~n~~~G~~l~~~ii~P~lyy~-N~w~~~~lPi~s~~~fd~~G~~Y~vs 319 (681)
T TIGR00727 241 STGLGINPISSFDWNQISGYINSPLVYPAWSYLTIYLGCILAFWIVIPAVYYS-NTWYCQYLPISSNGLYDNFGHSYNVT 319 (681)
T ss_pred ccCCCcCCcCcccHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHc-ccccccccCCccchhhhcCCCccccc
Confidence 234 889998765 899999999999999999999999999998653 333322111
Q ss_pred ----cc-hh--hhhh---------hhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccC
Q 037863 310 ----ES-DM--KSLY---------GYKVFLSV--ALILGDGLYNFLKILSLTVINIYGTIKTKNLNAGQLRSLKSFSTYK 371 (672)
Q Consensus 310 ----~~-~~--~g~~---------~y~v~ig~--~~m~~~gl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (672)
++ .+ .... +|.++.|+ +.+.+.-+..++ ---+.++++.+++
T Consensus 320 ~il~~~~~ld~~~y~~ysp~~l~~~~al~yg~~fA~~~a~i~h~~l----~~~~~i~~~~~~~----------------- 378 (681)
T TIGR00727 320 EILDKDNKFDVKKYQSYSPPFYSTTNAVSYGLSFASIPLMITHSII----VHGKLLFNALKDD----------------- 378 (681)
T ss_pred eeeCCCCcCCHHHHHHhCCccccHHHHHHHHHHHHHHHHHHHHHHH----HhhHHHHHHHhcC-----------------
Confidence 00 00 1111 22334444 222221111111 1112233222210
Q ss_pred ccccccccchhhcCCChhHHHHHHHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHhhhhhccccceeccCccchhhHH
Q 037863 372 SLEDLKHNEIFLRENIPMWIGVAGYLVFSILSIIVIPIMFPQLKWYYVVIAYILAPSLSFCNAYGAGLTDINMAYNYGKV 451 (672)
Q Consensus 372 ~~~~~~~~~~~~~~~ip~~~~~~glv~~~~i~~~~~~~~f~~~~~~~~lla~~la~v~s~~~~~~~G~Td~np~~~~gki 451 (672)
+.||.+..-...++++|.||.+..++++.+++++++...-.++|||..++|+.+++++.+..+.+.|.||.+ .+++++
T Consensus 379 ~~~D~h~rlM~~Y~evP~WWy~~~l~is~~~~~~~v~~~~t~lP~W~~~lal~l~~i~~iP~~~i~a~t~~~--~~ln~l 456 (681)
T TIGR00727 379 DYPDPHSNLMKAYKEVPDWWYLAVFLGFFGMGIATVEHWPTETPVWGLFVCLIFNFVFLIPTTILQATTNIS--FGLNVL 456 (681)
T ss_pred CCCChhHHHhhcCCCCcHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHhhhheEeecCCc--cchhHH
Confidence 012222211223789999999999999888887777666559999999999999999999999999999988 479999
Q ss_pred HHHHHHHHhCCCchhHHHHHhhHHHHHHHHHHHHhhhhhhhhhhcCCChhHHHHHHHHHHHHhHhHHHHHH-HHhhhhcc
Q 037863 452 ALFVLAALSGRENGLVAGMVGCGLVKSVVSVACILMQDFKTAHCTYTSPRAMFLNQVIGTAIGCVVAPISF-LLFYKAFD 530 (672)
Q Consensus 452 sqli~g~~~g~~~~~~anL~~~~i~~~~a~qA~dl~qDlKtG~LlgasPr~qf~aQliG~~vga~v~~~v~-~L~~~aY~ 530 (672)
+|++.|++. ||++.+|++.+++.+.+.+||-|++||+|.||++|.+||+||.+|++|+++|++++.+++ +++.+.-+
T Consensus 457 ~eli~Gy~~--PG~p~a~~~fk~~g~~~~~qa~~~~~DlKlGhY~kiPPR~~F~~Q~~gtl~~~~v~~~v~~~~l~~i~~ 534 (681)
T TIGR00727 457 TEFIVGYAL--PGRPLAMMIFKTFGYITDGQADNFVSDLKIGHYMKIPPRALFRGQCVATIWQIFVQIGVLNWAIGNIDN 534 (681)
T ss_pred HHHHhhhcc--CCCchHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 999999999 999999999999999999999999999999999999999999999999999999999995 77778888
Q ss_pred CCCCC--CCCCchHH-------HHHHHHHHhhhcCCCCCchhhHHHHHH-HHHHHHHHHHHhhhcccccccccchhhhhc
Q 037863 531 VGNPH--GEFKAPYA-------LIYRNMAVIGVQGFSALPQHCLQLCYG-LFASAVAVNLVRDFSPEKIGKWMPLPMVMA 600 (672)
Q Consensus 531 i~~p~--~~~~aP~a-------~~~~~vA~l~~~G~~~LP~~~l~~~~v-~~~~~~~~~~~~~~~~~~~~~~iPs~~a~g 600 (672)
+|+|+ +.|+||.+ .+|..++.-..-+.+.+++. +.|+.. .+++.++..++++..||++.|+++.++.++
T Consensus 535 ~c~~~~~~~ftcp~~~~~f~asv~Wg~iGP~r~F~~g~~Y~~-l~~~fliGa~~pi~~~~~~r~~P~~~~~~~n~pv~~~ 613 (681)
T TIGR00727 535 FCTADQNAKYTCPNAVVFFNASVIWGVIGPKRIFSHGYIYPG-LKWFWLIGACIGIFFWLVWKKWPKFYPRYLDWPMLFV 613 (681)
T ss_pred cCCCCCCCCccCCCccceeehehhhhhcchHHHcCCCCcchH-HHHHHHHHHHHHHHHHHHHHhcchhhhhhCCccHHHh
Confidence 98854 68999998 56766542222333456666 555333 333333444666666766667777667776
Q ss_pred c-cccchh---hhHHHHHHHHHHHHHHHhcCccccccchhhhhhhhhhchhhhHHHHH
Q 037863 601 L-PFLVGA---YFAIDMCVGSLVVYLWHKRNPKKAELMIPAVASGLICGEGLWTLPAS 654 (672)
Q Consensus 601 i-g~~lp~---~~s~~~~iG~li~~~~~r~~~~~~~~~~~~vAsGLIaGegl~gvv~a 654 (672)
. |+..|. +++.+..+|.+..+++|||+++||++|+|++||||++|++++++++-
T Consensus 614 ~~g~~~~a~~~n~~s~~~vg~~f~~~irr~~~~ww~kYnYvlsAald~G~a~~~~iif 671 (681)
T TIGR00727 614 GTGYIPPATPYNYMYYTSVGLFFQYYMKKHHLNWWEKYNYVLSAGLDTGLVLSAIIIF 671 (681)
T ss_pred hccccCCcchhhHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHHHHHHHHHHHHhHhe
Confidence 6 666554 37777889999999999999999999999999999999999999875
No 6
>KOG2262 consensus Sexual differentiation process protein ISP4 [Signal transduction mechanisms]
Probab=100.00 E-value=3e-44 Score=395.83 Aligned_cols=572 Identities=17% Similarity=0.227 Sum_probs=407.7
Q ss_pred ccchHHHHHHHHHHHHHHHHhhheeeecccccccc---hhHHHHHHHHHHHHHHHHhhhc----------CCCCCCCCcc
Q 037863 38 KQITIRGLVVSILLGIVYSVIVMKLNLTTGLVPQL---NVSAALLAFLIIRSWTKVLQRA----------GYVTRPFTKQ 104 (672)
Q Consensus 38 ~qlT~RavvvG~~lg~l~~asnlylGLk~G~t~~~---si~aailgf~ilk~~~~~l~~~----------~i~~~pft~~ 104 (672)
+-.|+|.=++|.+..+++++.|..+++|+ ++. .+.+=+..+-+-|.+.|.|+.. .+-.+||+.+
T Consensus 69 Pv~TfRmW~Lg~~~~iv~a~vNqFF~~R~---~~lsis~i~aQi~~~PlGklma~~lP~~~~~~~~~~~fslNPGPFn~K 145 (761)
T KOG2262|consen 69 PVLTFRMWFLGLISCIVLAFVNQFFSYRY---PPLSISAIVAQIATYPLGKLMAKTLPTWKFGLGGRWSFSLNPGPFNVK 145 (761)
T ss_pred hhHhHHHHHHHHHHHHHHHHHhhhhcccC---CCeehHHHHHHHHHHhHHHHHHHhCCceeeecCcceEEEeCCCCCcch
Confidence 45899999999999999999999999998 453 3445677788889998887742 2336799999
Q ss_pred hhHHHHHHHhhhhhhccchhhhHHHhhhhHHHHhhhCCCCCCCCcccccCCchHHHHHHHHHHHHHhhHhHHhhhhhhhc
Q 037863 105 ENTMIQTCAVACYSIAVGGGFGSYLLGLSRKIYELSGEDTEGNSRRAIKEPGLGWMIGYLFVVCFVGLFVLIPLRKIVIV 184 (672)
Q Consensus 105 ENnivQT~AsA~g~~~~~~gf~~~ipAm~~l~~~ll~~~~~g~~~~~~~~~~~g~~~~~~~~~~~lGv~favPLRr~~Iv 184 (672)
|..++--.|..+.+-+.+-...+.+=+.|. +.++++..+++++..=++|--+|=-+||+++.
T Consensus 146 EHvlitIfan~~sg~aYat~Ii~~~k~fY~------------------~~l~f~~~~ll~lttQ~lGyGwAGl~Rk~lV~ 207 (761)
T KOG2262|consen 146 EHVLITIFANIGSGTAYATHIITAQKAFYK------------------RNLSFGYAFLLVLTTQLLGYGWAGLFRKYLVY 207 (761)
T ss_pred heeeeehhhhccCcchhhhHHHHHHHHHHh------------------ccccHHHHHHHHHHHHHhcccHhhhhHhhccC
Confidence 999887777665444333333333333321 13456665666666667777777777999999
Q ss_pred cCCcCChhhHHHHHHHhcccccchH-HH-HHHHHHHHHHHHHHHHHHHH-HHhhcCcc----CCCc-cccc--------c
Q 037863 185 DLKLTYPSGLATAVLINGFHSQGDQ-MA-KKQVRGFMKYFSISFLWGFF-QWFYSGKQ----SCGF-KQFP--------T 248 (672)
Q Consensus 185 ~~~L~FPsGtAtA~~I~~~h~~g~~-~a-~~~~~~L~~~f~~s~~~~~~-~~~~~~g~----~~~~-~~~~--------~ 248 (672)
-...-.|+-...-.+.|++|++.++ ++ ..+.|-..+.|.+||.|-.| .++|+.-. -|+. ++-. .
T Consensus 208 Pa~m~WPsnLvqvsLFraLHeke~~~~g~msR~rFF~ivfv~SFiyY~fPgylF~~Ls~~swvcW~~P~s~~~~qi~sg~ 287 (761)
T KOG2262|consen 208 PASMWWPSNLVQVSLFRALHEKENKSKGNMSRYRFFLIVFVASFIYYWFPGYLFPILSSFSWVCWIWPSSITANQIGSGL 287 (761)
T ss_pred cHhhcCcchhHHHHHHHHHHhhhhhcccCccchhhhhHHHHHHHHHHHhhHHHHHHHhhhheeeEeccccHHHHHhcccc
Confidence 9999999999999999999983221 11 22356677888899987643 33333210 1211 1101 0
Q ss_pred cccccccceeeeeccc--cchhcceecchhHHHHHHHHHHHHhhhhhhhhhhccCcccCCC-------------------
Q 037863 249 FGLQAWKQTFYFDFSM--TYVGAGMICSHLVNLSLLLGAVLSYGIMWPLIDRLKGHWFSES------------------- 307 (672)
Q Consensus 249 ~g~~~~~~~~~~~~sp--a~iG~G~ivG~~v~~Sml~GailaWgil~P~l~~~~g~w~~~~------------------- 307 (672)
-|+.. .-+.+||+- +|+|.=...+.-+.+-.++|-++-=-|..|.+-.+ ..|....
T Consensus 288 ~GLGi--~~~tlDW~~IssylgSPLasP~~a~~n~~~gfvl~~~IV~Pi~Y~~-n~~~a~~fPI~Ss~lf~~tG~sYnvt 364 (761)
T KOG2262|consen 288 TGLGI--GPFTLDWSQISSYLGSPLASPFFAIANVFLGFVLFIYIVLPILYWT-NTYDAKYFPIFSSSLFDHTGNSYNVT 364 (761)
T ss_pred ccccc--ccccccHHHHHHHcCCcchhhHHHHHHHhhhhhhhhhhhhhhHhhc-cceecceeceecCcceecCCcEecee
Confidence 12222 135678853 47999999999999999999988888888988553 2222110
Q ss_pred -CCcchh-hhhhhhH----HHHHHHHH--HHHHHHHHHHHHHH----HHHHHHHHhhhcccccccccccccccccCcccc
Q 037863 308 -LKESDM-KSLYGYK----VFLSVALI--LGDGLYNFLKILSL----TVINIYGTIKTKNLNAGQLRSLKSFSTYKSLED 375 (672)
Q Consensus 308 -~~~~~~-~g~~~y~----v~ig~~~m--~~~gl~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (672)
+-++++ -++..|. +|.+..-. -+-++..+...+.. --+.++++.+... +..+|
T Consensus 365 ~Il~~~f~ld~~~Y~~ysp~yls~~falsygl~faa~~a~i~Hv~Lf~gkdiw~~~~~~~---------------~k~~D 429 (761)
T KOG2262|consen 365 KILDSKFELDLDKYQEYSPLYLSTFFALSYGLGFAALSATIVHVALFNGKDIWQQTKKAF---------------NKKMD 429 (761)
T ss_pred eeecCccccchHHHhhcCCcceeHHHHHHHHHHHHHHHHHhhhheeeccHHHHHHHHhcc---------------ccCCC
Confidence 001111 1122232 34333222 22233332222221 1134444444221 11123
Q ss_pred ccccchhhcCCChhHHHHHHHHHHHHHHHHhhccccC--chhHHHHHHHHHHHHHhhhhhccccceeccCccchhhHHHH
Q 037863 376 LKHNEIFLRENIPMWIGVAGYLVFSILSIIVIPIMFP--QLKWYYVVIAYILAPSLSFCNAYGAGLTDINMAYNYGKVAL 453 (672)
Q Consensus 376 ~~~~~~~~~~~ip~~~~~~glv~~~~i~~~~~~~~f~--~~~~~~~lla~~la~v~s~~~~~~~G~Td~np~~~~gkisq 453 (672)
-++.-.-.++++|.||....+++...+.++++.+.-. |+|||..++|+.+++++.....-..+.|+ ..+++..++|
T Consensus 430 iHtrlMkkYKeVP~WWf~~ili~s~~l~~~~~~~~~~~~q~PwWg~~va~~ia~vf~iPigii~AtTN--q~~GLNiitE 507 (761)
T KOG2262|consen 430 IHTRLMKKYKEVPDWWFLAILIVSLGLGLAACEGYKTQVQLPWWGLLVACAIAFVFTIPIGIIQATTN--QTPGLNIITE 507 (761)
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHhhheeeecccccCchHHHHHHHHHHHHHhccHHHhhhhcc--CCccHHHHHH
Confidence 2221111378999999999998888888887766544 88999999999999999999988888875 4559999999
Q ss_pred HHHHHHhCCCchhHHHHHhhHHHHHHHHHHHHhhhhhhhhhhcCCChhHHHHHHHHHHHHhHhHHHHH-HHHhhhhccCC
Q 037863 454 FVLAALSGRENGLVAGMVGCGLVKSVVSVACILMQDFKTAHCTYTSPRAMFLNQVIGTAIGCVVAPIS-FLLFYKAFDVG 532 (672)
Q Consensus 454 li~g~~~g~~~~~~anL~~~~i~~~~a~qA~dl~qDlKtG~LlgasPr~qf~aQliG~~vga~v~~~v-~~L~~~aY~i~ 532 (672)
++.|++. ||+++||++.+.+.+.++.||-.++||||.||+++.|||.||.+|++|++++++|..++ .|++++.-++|
T Consensus 508 ~i~Gy~~--PgrPiAn~~FK~yGyism~Qal~f~~DlKlghYMKIPPR~mF~~Q~v~tivs~~Vn~gv~~W~m~~I~~iC 585 (761)
T KOG2262|consen 508 YIIGYIY--PGRPIANLCFKTYGYISMTQALTFLQDLKLGHYMKIPPRSMFAVQLVGTIVAGFVNLGVAWWLMYSIPNIC 585 (761)
T ss_pred HHHHhhc--CCchHHHHHHHHhchhhHHHHHHHHhhccceeeecCChHHHHHHHHHHHHhheeeeHHhHHHHHhcccccc
Confidence 9999999 99999999999999999999999999999999999999999999999999999999998 89999999999
Q ss_pred C--CCCCCCchHHHHHHHHHHh-hhcCCCCCch-----hhHHHHHHHHHHHHHHHHHhhh----ccc-ccccccchhhhh
Q 037863 533 N--PHGEFKAPYALIYRNMAVI-GVQGFSALPQ-----HCLQLCYGLFASAVAVNLVRDF----SPE-KIGKWMPLPMVM 599 (672)
Q Consensus 533 ~--p~~~~~aP~a~~~~~vA~l-~~~G~~~LP~-----~~l~~~~v~~~~~~~~~~~~~~----~~~-~~~~~iPs~~a~ 599 (672)
+ +++.|+||.++++.+.+++ +..|+..++. ..+.| |+.+|++.+++... .|+ +|.+.+--++-+
T Consensus 586 ~~~~~s~~TCP~~rvffnASvIWGlIGP~riF~~~g~Y~~l~w---FFLiGa~~pv~vw~~~k~fPk~~w~~~i~~pvl~ 662 (761)
T KOG2262|consen 586 TTDQNSPWTCPSDRVFFNASVIWGLIGPKRIFGSLGIYPGLNW---FFLIGALAPVLVWLLQKKFPKKKWIKQINPPVLF 662 (761)
T ss_pred cCCCCCCccCCCCceEEeceeeeecccchhhcCCCCccCcchH---HHHHHHHhhHHHHHHHHhcchhhhhhccCcceEe
Confidence 7 4568999999999998887 6667544444 22666 55556666655444 333 455543225666
Q ss_pred cccccchh----hhHHHHHHHHHHHHHHHhcCccccccchhhhhhhhhhchhhhHHHHHH
Q 037863 600 ALPFLVGA----YFAIDMCVGSLVVYLWHKRNPKKAELMIPAVASGLICGEGLWTLPASI 655 (672)
Q Consensus 600 gig~~lp~----~~s~~~~iG~li~~~~~r~~~~~~~~~~~~vAsGLIaGegl~gvv~a~ 655 (672)
|-.-.+|| +|+.++.+|-+++|+.+|+++.||++|+|++|+||+||-+++||++-+
T Consensus 663 gg~~~mPpat~vny~sw~iv~fifny~i~r~~~~WW~kYNyvLsaaldaG~a~~~vliff 722 (761)
T KOG2262|consen 663 GGTANMPPATAVNYTSWAIVGFIFNYYIFRYRRSWWQKYNYVLSAALDAGVAFMGVLIFF 722 (761)
T ss_pred cccccCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhcccchhHHHhHhhh
Confidence 66555564 799999999999999999999999999999999999999999998864
No 7
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=96.65 E-value=0.082 Score=62.22 Aligned_cols=133 Identities=18% Similarity=0.345 Sum_probs=83.0
Q ss_pred HHHHHHhhHhHHhhhhh-----hhc-----cCCcCChhhHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037863 165 FVVCFVGLFVLIPLRKI-----VIV-----DLKLTYPSGLATAVLINGFHSQGDQMAKKQVRGFMKYFSISFLWGFFQWF 234 (672)
Q Consensus 165 ~~~~~lGv~favPLRr~-----~Iv-----~~~L~FPsGtAtA~~I~~~h~~g~~~a~~~~~~L~~~f~~s~~~~~~~~~ 234 (672)
+.+.++|.+.+++.=+. .+. +..++-|...+.+.+++..-+ +.+ ......+..++..+++..+..|+
T Consensus 475 ~iG~~ig~~v~~~v~~l~~~~~~~~~~~~~~~~~~ap~a~~~aav~~g~~~-~~~--~~~~~~~~~~~~~G~~~~i~~~l 551 (624)
T PF03169_consen 475 IIGTIIGAFVAVAVMRLLNQAYPCGPDQGDSFSCPAPQAFAWAAVAWGLIG-PQR--GLPYSALPWGFLIGAVLPILFWL 551 (624)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCccccccCcCcchHHHHHHHHHHHhcC-Ccc--cchHHHHHHHHHHHHHHHHHHHH
Confidence 45666676666655333 333 466777888888888887743 111 12234566677777776666654
Q ss_pred hcCccCCCcccccccccccccceeeeeccccchh----cceecchhHHHHHHHHHHHHhhhhhhhhhhccCcccCCCCCc
Q 037863 235 YSGKQSCGFKQFPTFGLQAWKQTFYFDFSMTYVG----AGMICSHLVNLSLLLGAVLSYGIMWPLIDRLKGHWFSESLKE 310 (672)
Q Consensus 235 ~~~g~~~~~~~~~~~g~~~~~~~~~~~~spa~iG----~G~ivG~~v~~Sml~GailaWgil~P~l~~~~g~w~~~~~~~ 310 (672)
.. +.+| ++..+| .|+..+.+.+..+++|.++.|.+= .+...|+
T Consensus 552 ~~-------~~~P---------------~~~~~~~~~~~~~~~~~~~~~~~~iG~~~~~~~~-----~~~~~~~------ 598 (624)
T PF03169_consen 552 LQ-------RKFP---------------SPLAFGGASSIGFYLPSNYTSAIFIGGLFQFYWR-----RRYPKWW------ 598 (624)
T ss_pred HH-------hhCC---------------hhheeeecccccccchhHHHHHHHHHHHHHHHhh-----hcchhHH------
Confidence 31 1112 225566 889999999999999999988643 2222222
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 037863 311 SDMKSLYGYKVFLSVALILGDGLYNFLKI 339 (672)
Q Consensus 311 ~~~~g~~~y~v~ig~~~m~~~gl~~l~~~ 339 (672)
..|..-++.|++.++++..++..
T Consensus 599 ------~~y~~~laagl~aG~~l~~li~~ 621 (624)
T PF03169_consen 599 ------EKYNYVLAAGLIAGEALMGLIIA 621 (624)
T ss_pred ------HhHhhHHHHHHHHHHHHHHHHHH
Confidence 12344578889999999876643
No 8
>TIGR00733 putative oligopeptide transporter, OPT family. This protein represents a small family of integral membrane proteins from Gram-negative bacteria, a Gram-positive bacteria, and an archaeal species. Members of this family contain 15 to 18 GES predicted transmembrane regions, and this family has extensive homology to a family of yeast tetrapeptide transporters, including isp4 (Schizosaccharomyces pombe) and Opt1 (Candida albicans). EspB, an apparent equivalog from Myxococcus xanthus, shares an operon with a two component system regulatory protein, and is required for the normal timing of sporulation after the aggregation of cells. This is consistent with a role in transporting oligopeptides as signals across the membrane.
Probab=94.89 E-value=2.1 Score=50.39 Aligned_cols=227 Identities=12% Similarity=0.077 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHHHhhhhhccccceeccCccchhh--HHHHHHHHHHhCCCchhHHHHHhhHHHHHHHHHHHHhhhhhh--
Q 037863 416 WYYVVIAYILAPSLSFCNAYGAGLTDINMAYNYG--KVALFVLAALSGRENGLVAGMVGCGLVKSVVSVACILMQDFK-- 491 (672)
Q Consensus 416 ~~~~lla~~la~v~s~~~~~~~G~Td~np~~~~g--kisqli~g~~~g~~~~~~anL~~~~i~~~~a~qA~dl~qDlK-- 491 (672)
+..++++++++.+++..|.|..=-+++++...+= .++-.++-.+. +..+.=|-+.=++++++.+.++ ++--+-
T Consensus 4 ~Ravi~G~~lg~l~~asn~YlgLk~G~t~~~sI~aAil~~~ilr~~~--~~t~~EnnivQT~asA~~~~ag-~~~~lPAl 80 (591)
T TIGR00733 4 VRGFILGALITIIFTAANVYLGLYVGMTFAASIPAAVISMAVLMAFR--DRSILENNMVQTAASAAGTLSS-VIFVLPAL 80 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHhc--cCChhHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 4456677777777777777775555555544331 22222222222 2222222222222222222222 222211
Q ss_pred --hhhhcCCChhHHHHHHHHHHHHhHhHHHHHHHHhhhhccCCCCCCCCCchHHHHHHHHHHhhhcCCCCCchhhHHHHH
Q 037863 492 --TAHCTYTSPRAMFLNQVIGTAIGCVVAPISFLLFYKAFDVGNPHGEFKAPYALIYRNMAVIGVQGFSALPQHCLQLCY 569 (672)
Q Consensus 492 --tG~LlgasPr~qf~aQliG~~vga~v~~~v~~L~~~aY~i~~p~~~~~aP~a~~~~~vA~l~~~G~~~LP~~~l~~~~ 569 (672)
.|+...-+.+.....-+.|.++|.+.+.++-+.|-..+++ .||-..|. |++...|.++--+.......
T Consensus 81 ~~lg~~~~~~~~~~~~~~~~gg~lGvlf~iPLRr~~I~~~~L-----~fP~G~A~-----Ae~l~~g~~g~~~~~~~~l~ 150 (591)
T TIGR00733 81 LMLGYWTEFPYWITTVICALGGSLGVLFTIPLRRAFVVESKL-----PYPEGVAC-----AEVLKAGDKARNGTGAKPIA 150 (591)
T ss_pred HhcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-----CCCCHHHH-----HHHHHccccccchhhHHHHH
Confidence 2222223557777777889999999998886666322222 45555554 33323342210011111112
Q ss_pred HHHHHHHHHHHHhhh--ccc---cc-----c--cc--cchhhhhcccccchhhhHHHHHHHHHHHHHHH-----h--cCc
Q 037863 570 GLFASAVAVNLVRDF--SPE---KI-----G--KW--MPLPMVMALPFLVGAYFAIDMCVGSLVVYLWH-----K--RNP 628 (672)
Q Consensus 570 v~~~~~~~~~~~~~~--~~~---~~-----~--~~--iPs~~a~gig~~lp~~~s~~~~iG~li~~~~~-----r--~~~ 628 (672)
..++++.+...++.+ .+. .| . .+ =+|+.-+|.|+..++..+..|++|++++|..- + ..+
T Consensus 151 ~g~~~s~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~SpalvG~G~ivG~~v~~s~~~G~vlaWgvl~P~l~~~~~~~ 230 (591)
T TIGR00733 151 YGGILASIYAFLGSLRVWSGTLSAAKLVGRRALYFGSDLSLALIGVGYLVGLNIGFAMFLGGAIAWGVAIPIYTAKMGSP 230 (591)
T ss_pred HHHHHHHHHHHHHHhccCCchHHHHHhcCCcceEEEecccHHHHcCceeeChHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 122333333222211 111 11 0 11 36689999999999999999999999997632 1 111
Q ss_pred c---ccccchhh-------hhhhhhhchhhhHHHHHH
Q 037863 629 K---KAELMIPA-------VASGLICGEGLWTLPASI 655 (672)
Q Consensus 629 ~---~~~~~~~~-------vAsGLIaGegl~gvv~a~ 655 (672)
. .+++.... +..|.++++|+++++...
T Consensus 231 ~~~~~~~~~~~vw~~~vR~iGvg~m~~~gl~~l~~~~ 267 (591)
T TIGR00733 231 GDLSALDLAWTIWSTKVRYIGVGAIVVAALWTLLKLR 267 (591)
T ss_pred CCccHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHH
Confidence 1 01111111 589999999999998654
No 9
>TIGR00728 OPT_sfam oligopeptide transporters, OPT superfamily. Homology between the two branches of the superfamily is seen most easily at the ends of the protein. The central regions are poorly conserved within each branch and may not be homologous between branches.
Probab=59.81 E-value=48 Score=39.58 Aligned_cols=63 Identities=19% Similarity=0.178 Sum_probs=43.3
Q ss_pred eeccccchhcceecchhHHHHHH----HHHHHHhhhhhhhhhhccCcccCCCCCcchhhhhhhhHHHHHHHHHHHHHHHH
Q 037863 260 FDFSMTYVGAGMICSHLVNLSLL----LGAVLSYGIMWPLIDRLKGHWFSESLKESDMKSLYGYKVFLSVALILGDGLYN 335 (672)
Q Consensus 260 ~~~spa~iG~G~ivG~~v~~Sml----~GailaWgil~P~l~~~~g~w~~~~~~~~~~~g~~~y~v~ig~~~m~~~gl~~ 335 (672)
.-.+|..+|.|+..++..++.++ +|+++.|.+.- +...| +.. ..|..-.+.|++.++++..
T Consensus 581 ~~~~~~~~~~~~~lp~~~~~~~~~~~~vG~~~~~~~~r-----r~~~~--------~~~--~~y~~~laagL~~G~al~g 645 (654)
T TIGR00728 581 YINPPVAVGGGGYIPPATAVNYSTWAAVGGFFNYRWRK-----NKRAD--------WKA--EKYNYVLAAGLIAGEALAG 645 (654)
T ss_pred hcCHHHhhhhhhccCCcchhhhhHHHHHHHHHHHHHHH-----hhhhh--------hhh--hhhHHHHHHHHhhhHHHHH
Confidence 44788899999999999999999 88888776642 11111 000 1244457888888888877
Q ss_pred HH
Q 037863 336 FL 337 (672)
Q Consensus 336 l~ 337 (672)
++
T Consensus 646 vi 647 (654)
T TIGR00728 646 VI 647 (654)
T ss_pred HH
Confidence 54
No 10
>PF11674 DUF3270: Protein of unknown function (DUF3270); InterPro: IPR021688 This family of proteins with unknown function appears to be restricted to Streptococcus.
Probab=46.66 E-value=31 Score=30.78 Aligned_cols=52 Identities=17% Similarity=0.267 Sum_probs=33.7
Q ss_pred ccchHH-HHHHHHHHHHHHHHhhheeeecccccccchhHHHHHHHHHHHHHHHHhh
Q 037863 38 KQITIR-GLVVSILLGIVYSVIVMKLNLTTGLVPQLNVSAALLAFLIIRSWTKVLQ 92 (672)
Q Consensus 38 ~qlT~R-avvvG~~lg~l~~asnlylGLk~G~t~~~si~aailgf~ilk~~~~~l~ 92 (672)
+||.+- -+.+=|++.+++++.=+-+++.+=| +=..|.++|+++....++.++
T Consensus 37 ~ELlFF~nIA~FcI~tvlfsFvfLs~kl~t~~---Af~~Ai~~Sl~~~~~~~~~ik 89 (90)
T PF11674_consen 37 KELLFFANIAFFCIFTVLFSFVFLSLKLNTFW---AFPLAILISLAITQLVRKFIK 89 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH---HHHHHHHHHHHHHHHHHHHhc
Confidence 444443 5667788888888876666666532 333466778888887665543
No 11
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=42.96 E-value=52 Score=34.20 Aligned_cols=72 Identities=18% Similarity=0.192 Sum_probs=52.8
Q ss_pred hHHHHHHHHHHHHhHhHHHHHHHHhhhhccCCCC------CCCCCchHHHHHHHHHHhhhcCCCCCchhhHHHHHHHHHH
Q 037863 501 RAMFLNQVIGTAIGCVVAPISFLLFYKAFDVGNP------HGEFKAPYALIYRNMAVIGVQGFSALPQHCLQLCYGLFAS 574 (672)
Q Consensus 501 r~qf~aQliG~~vga~v~~~v~~L~~~aY~i~~p------~~~~~aP~a~~~~~vA~l~~~G~~~LP~~~l~~~~v~~~~ 574 (672)
|++|..-+.|+++|++++...-.++.+..+..+. ..+-+.|-| +-+.++.++.|.-...+.+..+++
T Consensus 87 k~~w~~I~~g~~vGs~~ai~s~~llak~~g~~~~~~~Sl~PkSvTTpiA-------m~vs~~iGGip~ltav~Vi~tGi~ 159 (230)
T COG1346 87 KRHWKPILAGVLVGSVVAIISGVLLAKLFGLSPELILSLLPKSVTTPIA-------MEVSESIGGIPALTAVFVILTGIL 159 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHhcccccccHHH-------HHHHHhcCCchHHHHHHHHHHHHH
Confidence 7888888999999999998888888888876430 022344433 333477788899888888888888
Q ss_pred HHHHH
Q 037863 575 AVAVN 579 (672)
Q Consensus 575 ~~~~~ 579 (672)
+.++.
T Consensus 160 Gavlg 164 (230)
T COG1346 160 GAVLG 164 (230)
T ss_pred HHHHH
Confidence 87776
No 12
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.68 E-value=56 Score=35.96 Aligned_cols=33 Identities=15% Similarity=0.368 Sum_probs=22.9
Q ss_pred ccchHHHHHHHHHHHHHHHHhhheeeecccccccchhHHHHHHHHHHHHHHHHhhh
Q 037863 38 KQITIRGLVVSILLGIVYSVIVMKLNLTTGLVPQLNVSAALLAFLIIRSWTKVLQR 93 (672)
Q Consensus 38 ~qlT~RavvvG~~lg~l~~asnlylGLk~G~t~~~si~aailgf~ilk~~~~~l~~ 93 (672)
+..+.+-.++|.++ +..+|+-.++..|.+.+|+
T Consensus 184 ep~~~~~~vl~~~f-----------------------vl~tlaivLFPLWP~~mR~ 216 (372)
T KOG2927|consen 184 EPRPLMWQVLGVLF-----------------------VLVTLAIVLFPLWPRRMRQ 216 (372)
T ss_pred cCCchhHHHHHHHH-----------------------HHHHHHHHhcccCcHHHhc
Confidence 34677777777665 3556667778888887765
No 13
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=36.45 E-value=51 Score=28.24 Aligned_cols=27 Identities=30% Similarity=0.416 Sum_probs=16.8
Q ss_pred CCCCCCCccchHHHHHHHHHHHHHHHH
Q 037863 31 KRQQPWTKQITIRGLVVSILLGIVYSV 57 (672)
Q Consensus 31 ~~~~~~~~qlT~RavvvG~~lg~l~~a 57 (672)
.|..|.+.-+..=+.++|+++|+.+.+
T Consensus 52 ~P~~P~~~lil~l~~~~Gl~lgi~~~~ 78 (82)
T PF13807_consen 52 KPVSPKRALILALGLFLGLILGIGLAF 78 (82)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555666677777777766554
No 14
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=33.80 E-value=1.2e+02 Score=32.91 Aligned_cols=53 Identities=21% Similarity=0.290 Sum_probs=33.8
Q ss_pred CChhHHH----HHHHHHHHHhHhHHHHHH-HHhhhhcc----CCCCC------CCCCchHHHHHHHHH
Q 037863 498 TSPRAMF----LNQVIGTAIGCVVAPISF-LLFYKAFD----VGNPH------GEFKAPYALIYRNMA 550 (672)
Q Consensus 498 asPr~qf----~aQliG~~vga~v~~~v~-~L~~~aY~----i~~p~------~~~~aP~a~~~~~vA 550 (672)
-=|++++ ++|.+|.++|+...-+.| .-+++-++ +.+|+ +.||+|.-..|++.-
T Consensus 105 ~~p~~k~p~Y~~aQ~iGAF~gaa~~y~~y~d~i~~f~Gg~~~vtgp~aTAgiFaTyP~p~ls~~n~F~ 172 (316)
T KOG0224|consen 105 RLPWKKFPVYVLAQFIGAFLGAATVYGLYYDAINEFDGGNRTVTGPKATAGIFATYPAPHLSLWNGFF 172 (316)
T ss_pred CCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCceEecCCccceEEEeecCchHhhhhHHHH
Confidence 3356554 578888888877665553 34444443 33343 389999999997763
No 15
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.29 E-value=40 Score=37.01 Aligned_cols=49 Identities=22% Similarity=0.275 Sum_probs=29.4
Q ss_pred hhHHHHHHHHHHHHHHHHhhccccC---chhHHHHH-HHHHHHHHhhhhhccc
Q 037863 388 PMWIGVAGYLVFSILSIIVIPIMFP---QLKWYYVV-IAYILAPSLSFCNAYG 436 (672)
Q Consensus 388 p~~~~~~glv~~~~i~~~~~~~~f~---~~~~~~~l-la~~la~v~s~~~~~~ 436 (672)
++|+.+..+++++++++++.|.+.. +.-||..+ .+.+++++|++..+|.
T Consensus 188 ~~~~vl~~~fvl~tlaivLFPLWP~~mR~gvyY~sig~~gfl~~IlvLaIvRl 240 (372)
T KOG2927|consen 188 LMWQVLGVLFVLVTLAIVLFPLWPRRMRQGVYYLSIGAGGFLAFILVLAIVRL 240 (372)
T ss_pred hhHHHHHHHHHHHHHHHHhcccCcHHHhcceeeeecchhHHHHHHHHHHHHHH
Confidence 4666666666666777777776643 33455555 4456666666555554
No 16
>TIGR00267 conserved hypothetical protein TIGR00267. This family is represented in three of the first four completed archaeal genomes, with two members in A. fulgidus.
Probab=30.10 E-value=73 Score=31.42 Aligned_cols=43 Identities=16% Similarity=0.261 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhhheeeecccccccchhHHHHHHHHHHHHHHHH
Q 037863 47 VSILLGIVYSVIVMKLNLTTGLVPQLNVSAALLAFLIIRSWTKV 90 (672)
Q Consensus 47 vG~~lg~l~~asnlylGLk~G~t~~~si~aailgf~ilk~~~~~ 90 (672)
++..+|.++-..-..+ ....+.+..++..+++..+++......
T Consensus 97 ls~~~g~liPllp~~~-~~~~~a~~~s~~~~~~~L~ilG~~~a~ 139 (169)
T TIGR00267 97 FSTFMGSFVPVLPFLV-FDRMTATIVTVLLTLIALLVLGVYLGR 139 (169)
T ss_pred HHHHHHHHHHHHHHHH-cchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666555433222 222233445666666666666654433
No 17
>PF11449 DUF2899: Protein of unknown function (DUF2899); InterPro: IPR021552 This is a bacterial family of uncharacterised proteins.
Probab=27.31 E-value=1.4e+02 Score=32.41 Aligned_cols=56 Identities=18% Similarity=0.222 Sum_probs=39.7
Q ss_pred CchhHHHHHhhHHHHHHHHHHHHhhhh-------hhhhhhcCCChhHHHHHHHHHHHHhHhHHHHHHHH
Q 037863 463 ENGLVAGMVGCGLVKSVVSVACILMQD-------FKTAHCTYTSPRAMFLNQVIGTAIGCVVAPISFLL 524 (672)
Q Consensus 463 ~~~~~anL~~~~i~~~~a~qA~dl~qD-------lKtG~LlgasPr~qf~aQliG~~vga~v~~~v~~L 524 (672)
|.-+++.|...+...-++..|+-+.|| +| .+||+-..+.++..+.+..+.-+.|++
T Consensus 236 ~sVliT~LYl~G~ipfsal~Aglis~dG~gLlpL~~------~~~~~~~~~~i~~~l~al~Vg~g~y~l 298 (298)
T PF11449_consen 236 PSVLITQLYLSGAIPFSALIAGLISNDGDGLLPLFA------MNPKAAENATIYSTLPALIVGYGLYFL 298 (298)
T ss_pred HHHHHHHHHHcCCcCHHHHHhhhhhcCcchHHHHHh------hCcchhHHHHHHHHHHHHHHHHHHHhC
Confidence 344445555555555556666666777 66 778999999999999988888877653
No 18
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=27.25 E-value=1e+02 Score=26.60 Aligned_cols=24 Identities=25% Similarity=0.302 Sum_probs=17.3
Q ss_pred hHHHHHHHhhhcccccccCCCCCC
Q 037863 3 EEKEKKEIEREDAEEDDHVELSDP 26 (672)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~ 26 (672)
|++.-+||||.=..++|.-.+.+.
T Consensus 7 E~r~L~eiEr~L~~~DP~fa~~l~ 30 (82)
T PF11239_consen 7 EQRRLEEIERQLRADDPRFAARLR 30 (82)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHhc
Confidence 445567888888788886666666
No 19
>PRK10711 hypothetical protein; Provisional
Probab=26.27 E-value=1.4e+02 Score=31.07 Aligned_cols=72 Identities=14% Similarity=0.013 Sum_probs=48.2
Q ss_pred hHHHHHHHHHHHHhHhHHHHHHHHhhhhccCCCC------CCCCCchHHHHHHHHHHhhhcCCCCCchhhHHHHHHHHHH
Q 037863 501 RAMFLNQVIGTAIGCVVAPISFLLFYKAFDVGNP------HGEFKAPYALIYRNMAVIGVQGFSALPQHCLQLCYGLFAS 574 (672)
Q Consensus 501 r~qf~aQliG~~vga~v~~~v~~L~~~aY~i~~p------~~~~~aP~a~~~~~vA~l~~~G~~~LP~~~l~~~~v~~~~ 574 (672)
|+.+..-++|+++|++++...-.++.+..++.+. ..+-+.|-| .-..+..++.|.-...+.++-+++
T Consensus 85 k~~~~~I~~~~~vG~~v~i~s~~~l~~~lg~~~~~~~Sl~pkSVTtPIA-------m~is~~iGG~~sLta~~ViitGi~ 157 (231)
T PRK10711 85 RARWKSIISICFIGSVVAMVTGTAVALWMGATPEIAASILPKSVTTPIA-------MAVGGSIGGIPAISAVCVIFVGIL 157 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhhhhhHHHH-------HHHHHHhCCcHHHHHHHHHHHHHH
Confidence 6777788888888888888777777777776421 023344443 222344566788777787777877
Q ss_pred HHHHH
Q 037863 575 AVAVN 579 (672)
Q Consensus 575 ~~~~~ 579 (672)
|.++.
T Consensus 158 Ga~~g 162 (231)
T PRK10711 158 GAVFG 162 (231)
T ss_pred HHHHH
Confidence 77776
No 20
>PF02084 Bindin: Bindin; InterPro: IPR000775 Bindin, the major protein component of the acrosome granule of sea urchin sperm, mediates species-specific adhesion of sperm to the egg surface during fertilisation [, ]. The protein coats the acrosomal process after externalisation by the acrosome reaction; it binds to sulphated, fucose-containing polysaccharides on the vitelline-layer receptor proteoglycans that cover the egg plasma membrane. Bindins from different genera show high levels of sequence similarity in both the mature bindin domain and in the probindin precursor region. The most highly conserved region is a 42-residue segment in the central portion of the mature bindin protein. This domain may be responsible for conserved functions of bindin, while the more highly divergent flanking regions may be responsible for its species-specific properties [].; GO: 0007342 fusion of sperm to egg plasma membrane
Probab=25.64 E-value=30 Score=35.69 Aligned_cols=12 Identities=50% Similarity=0.700 Sum_probs=7.9
Q ss_pred CChHHHHHHHhh
Q 037863 1 MQEEKEKKEIER 12 (672)
Q Consensus 1 ~~~~~~~~~~~~ 12 (672)
||||+|+||.|-
T Consensus 160 MqEeeeEEe~DA 171 (238)
T PF02084_consen 160 MQEEEEEEEQDA 171 (238)
T ss_pred HhhhHHHHHHHH
Confidence 788777666543
No 21
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=24.29 E-value=42 Score=25.98 Aligned_cols=13 Identities=62% Similarity=0.900 Sum_probs=9.5
Q ss_pred hHHHHHHHhhhcc
Q 037863 3 EEKEKKEIEREDA 15 (672)
Q Consensus 3 ~~~~~~~~~~~~~ 15 (672)
..|||||+||-++
T Consensus 35 Kkk~KKeie~ke~ 47 (49)
T PF11044_consen 35 KKKEKKEIERKED 47 (49)
T ss_pred hhhhHHHHHHHhh
Confidence 4678888887654
No 22
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=24.24 E-value=2e+02 Score=30.01 Aligned_cols=77 Identities=14% Similarity=0.119 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHHHhHhHHHHHHHHhhhhccCCCCCCCCC-chHHHHHHHHHHhhhcCCCCCchhhHHHHHHHHHHHHHHH
Q 037863 501 RAMFLNQVIGTAIGCVVAPISFLLFYKAFDVGNPHGEFK-APYALIYRNMAVIGVQGFSALPQHCLQLCYGLFASAVAVN 579 (672)
Q Consensus 501 r~qf~aQliG~~vga~v~~~v~~L~~~aY~i~~p~~~~~-aP~a~~~~~vA~l~~~G~~~LP~~~l~~~~v~~~~~~~~~ 579 (672)
|+++..-++|+++|++++...-.++.+..++.+ +-..+ +|.. +=..+|.-.++..++.|.-...+.++-+++|..+.
T Consensus 84 k~~~~~Il~~~~~G~~~~~~s~~~la~~lg~~~-~i~~Sl~pkS-vTtpiAm~vs~~iGG~~sLta~~vvitGi~Ga~~g 161 (226)
T TIGR00659 84 KKYWKEIILNVAVGSVIAIISGTLLALLLGLGP-EIIASLLPKS-VTTPIAMHVSEMIGGIPAVTAVFVILTGLLGTVFG 161 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCH-HHHHHhhhHH-hhHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH
Confidence 566666677777777777766666666666532 10000 2222 11222332335556678877777777777777775
No 23
>PLN02806 complex I subunit
Probab=22.48 E-value=84 Score=27.29 Aligned_cols=35 Identities=20% Similarity=0.346 Sum_probs=28.6
Q ss_pred ccchhHHHHHHHHHHHHHHHHhhhcCCCCCCCCcchhHH
Q 037863 70 PQLNVSAALLAFLIIRSWTKVLQRAGYVTRPFTKQENTM 108 (672)
Q Consensus 70 ~~~si~aailgf~ilk~~~~~l~~~~i~~~pft~~ENni 108 (672)
.++.+.+|++|++. +.+++.|||++....| .|.++
T Consensus 3 ~~~t~~GA~lGlg~-qlysNalRKLP~mrhP---WeHV~ 37 (81)
T PLN02806 3 ATATVVGALLGLGT-QLYSNALRKLPLMRHP---WEHVL 37 (81)
T ss_pred chHHHHHHHHHHHH-HHHHhHHhhCccccCc---HHHHH
Confidence 46788999999998 5678899999987755 88865
No 24
>PF03594 BenE: Benzoate membrane transport protein; InterPro: IPR004711 The benzoate:H+ symporter (BenE) family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter [, ]. Proteins in this family are about 400 residues in length and probably span the membrane 12 times. They exhibit about 30% identity to each other and limited sequence similarity to members of the aromatic acid:H+symporter (AAHS) family of the major facilitator superfamily (MFS). However the degree of similarity with the latter proteins is insufficient to establish homology. Thus, in spite of the sequence similarity and their similar substrate specificities, the BenE family must be considered separately. This family is classified as TC number 2.A.46 under the transporter classification (TC) system [].; GO: 0016021 integral to membrane
Probab=21.70 E-value=1e+03 Score=26.79 Aligned_cols=48 Identities=19% Similarity=0.263 Sum_probs=23.0
Q ss_pred cCCChhHHHHHHHHHHHHhHhHHHHHHHHhhhhccCCCCCCCCCchHHHHHHH
Q 037863 496 TYTSPRAMFLNQVIGTAIGCVVAPISFLLFYKAFDVGNPHGEFKAPYALIYRN 548 (672)
Q Consensus 496 lgasPr~qf~aQliG~~vga~v~~~v~~L~~~aY~i~~p~~~~~aP~a~~~~~ 548 (672)
.|+|| .|-..=+....++.-+....+-+.++. |+ ...|+.|.+.+-..
T Consensus 33 ~g~s~-~q~~SWl~al~~~~Gl~~i~lSl~yR~-Pi---~~AWStPGaAlL~~ 80 (378)
T PF03594_consen 33 AGASP-AQIASWLFALYLGMGLTSILLSLRYRM-PI---VTAWSTPGAALLAT 80 (378)
T ss_pred cCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHcC-Cc---hhhcchHHHHHHHH
Confidence 34554 233333333333333333333333332 33 23799999977643
No 25
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=21.59 E-value=27 Score=31.41 Aligned_cols=16 Identities=44% Similarity=0.659 Sum_probs=10.7
Q ss_pred CChHHHHHHHhhhccc
Q 037863 1 MQEEKEKKEIEREDAE 16 (672)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (672)
|.||.||+|.||+.-+
T Consensus 48 MKEER~K~E~~~q~r~ 63 (121)
T PF10669_consen 48 MKEERSKKEEKRQKRN 63 (121)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 5677777777665543
No 26
>COG1297 Predicted membrane protein [Function unknown]
Probab=20.47 E-value=1.4e+03 Score=27.42 Aligned_cols=68 Identities=19% Similarity=0.432 Sum_probs=45.4
Q ss_pred eeccccchhcceecchhHHHHHHHHHHHHhhhhhhhhhhccCcccCCCCCcchhhh-hhhhHHHHHHHHHHHHHHHHHHH
Q 037863 260 FDFSMTYVGAGMICSHLVNLSLLLGAVLSYGIMWPLIDRLKGHWFSESLKESDMKS-LYGYKVFLSVALILGDGLYNFLK 338 (672)
Q Consensus 260 ~~~spa~iG~G~ivG~~v~~Sml~GailaWgil~P~l~~~~g~w~~~~~~~~~~~g-~~~y~v~ig~~~m~~~gl~~l~~ 338 (672)
+-+.+.-+|+|+=-++..+.-.++|++++|++. ++-.| ..+..+ ++. =.+ +-.+.++++++++++.+.
T Consensus 542 ~~lpvlAvGvGIylP~s~~ipi~vG~~l~~~v~------~~~~~-~~~~~~--e~~~r~g--vl~aaGLIvGEsL~gvi~ 610 (624)
T COG1297 542 LRLPVLAVGVGIYLPPSLTIPIFVGGVLRWAVD------RKLKK-GDERYK--ERAKRIG--VLFAAGLIVGESLFGVIT 610 (624)
T ss_pred ccccceeeeeeeecChhhchHHHHHHHHHHHHH------Hhccc-ccchhh--hccccee--EEEeeccccchHHHHHHH
Confidence 667778889999999999999999999999987 22223 111111 110 011 135678889999987653
Done!