Query 037863
Match_columns 672
No_of_seqs 137 out of 598
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 08:09:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037863.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037863hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h3g_B Parathyroid hormone-rel 20.7 60 0.0021 21.0 2.1 18 486-512 3-20 (24)
2 2zy9_A Mg2+ transporter MGTE; 15.6 3E+02 0.01 29.8 7.9 55 273-328 409-468 (473)
3 2jln_A MHP1; hydantoin, transp 9.7 2.1E+02 0.0071 31.3 4.2 52 30-83 17-71 (501)
4 2rdd_B UPF0092 membrane protei 7.3 1.8E+02 0.0063 20.3 1.6 13 3-15 24-36 (37)
5 2l2t_A Receptor tyrosine-prote 7.1 2.9E+02 0.01 20.3 2.6 16 614-629 25-40 (44)
6 2ks1_B Epidermal growth factor 6.9 2.8E+02 0.0097 20.4 2.5 16 614-629 26-41 (44)
7 3mjh_B Early endosome antigen 6.8 1E+02 0.0036 21.5 0.1 9 663-671 8-16 (34)
8 1kil_E Complexin I snare-compl 6.5 1.4E+02 0.0049 22.4 0.7 16 2-17 21-36 (49)
9 3arc_J Photosystem II reaction 6.3 4.9E+02 0.017 18.8 3.3 25 508-532 12-37 (40)
10 3mk7_C Cytochrome C oxidase, C 6.0 1.3E+03 0.046 22.9 8.1 14 383-396 50-63 (311)
No 1
>3h3g_B Parathyroid hormone-related protein; GPCR, extracellular domain, PTHRP, PTH, PThr1, sugar transpo transport, membrane protein; HET: MAL; 1.94A {Escherichia coli}
Probab=20.68 E-value=60 Score=20.98 Aligned_cols=18 Identities=33% Similarity=0.685 Sum_probs=15.2
Q ss_pred hhhhhhhhhhcCCChhHHHHHHHHHHH
Q 037863 486 LMQDFKTAHCTYTSPRAMFLNQVIGTA 512 (672)
Q Consensus 486 l~qDlKtG~LlgasPr~qf~aQliG~~ 512 (672)
-+|||| |.+|.-++++-+
T Consensus 3 s~Q~~r---------Rr~wL~~ll~~v 20 (24)
T 3h3g_B 3 SIQDLR---------RRFFLHHLIAEI 20 (26)
T ss_dssp CHHHHH---------HHHHHHHHHHHH
T ss_pred cHHHHH---------HHHHHHHHHHHh
Confidence 589999 999999888754
No 2
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=15.65 E-value=3e+02 Score=29.75 Aligned_cols=55 Identities=24% Similarity=0.316 Sum_probs=28.1
Q ss_pred cchhHHHHHHHHHHHHh--hhhhhhhhhccCcccCCCCCcc---hhhhhhhhHHHHHHHHH
Q 037863 273 CSHLVNLSLLLGAVLSY--GIMWPLIDRLKGHWFSESLKES---DMKSLYGYKVFLSVALI 328 (672)
Q Consensus 273 vG~~v~~Sml~GailaW--gil~P~l~~~~g~w~~~~~~~~---~~~g~~~y~v~ig~~~m 328 (672)
+|.-+++||++..+++- |.+.|++.+|- +..|+..+.. ...++.|...|.+++.+
T Consensus 409 ~~~~v~~a~~~~~~~a~~~g~~~p~~~~~~-~~DPa~~s~p~itt~~D~~g~~~~~~~a~~ 468 (473)
T 2zy9_A 409 LLPVVGVSLVLIVFFANLVGAMLPFLLRRL-GVDPALVSNPLVATLSDVTGLLIYLSVARL 468 (473)
T ss_dssp SHHHHHHHHHHHHHHHHHHHTTHHHHHHHH-TCCGGGSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCccccccchHHHHHHHHHHHHHHHHHHH
Confidence 34455555555444432 45679987663 3456543321 12445555566655443
No 3
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=9.73 E-value=2.1e+02 Score=31.29 Aligned_cols=52 Identities=12% Similarity=0.066 Sum_probs=30.9
Q ss_pred CCCCCCCCccchHHHHHHHHHHHHHHHHhhheee---ecccccccchhHHHHHHHHH
Q 037863 30 NKRQQPWTKQITIRGLVVSILLGIVYSVIVMKLN---LTTGLVPQLNVSAALLAFLI 83 (672)
Q Consensus 30 ~~~~~~~~~qlT~RavvvG~~lg~l~~asnlylG---Lk~G~t~~~si~aailgf~i 83 (672)
.+|+|+++|..+++.+ ..+=+|..++..++.+| .. |..+.-.+.+.++|..+
T Consensus 17 i~pvp~~~R~~~~~~~-~~~W~g~~~~i~~~~~Ga~~~~-GLs~~~a~lai~lG~li 71 (501)
T 2jln_A 17 NAPTRYAERSVGPFSL-AAIWFAMAIQVAIFIAAGQMTS-SFQVWQVIVAIAAGCTI 71 (501)
T ss_dssp TSCCCGGGCCBCHHHH-HHHHHHHHCSTHHHHHHHHHTT-TSCHHHHHHHHHHHHHH
T ss_pred CCCCChhhCCCCHHHH-HHHHHHHHHHHHHHHHHHHHhc-CcCHHHHHHHHHHHHHH
Confidence 4789988888888877 35556666666666555 22 44434444444444433
No 4
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=7.35 E-value=1.8e+02 Score=20.29 Aligned_cols=13 Identities=23% Similarity=0.245 Sum_probs=8.6
Q ss_pred hHHHHHHHhhhcc
Q 037863 3 EEKEKKEIEREDA 15 (672)
Q Consensus 3 ~~~~~~~~~~~~~ 15 (672)
+.|++|||++|-+
T Consensus 24 Q~Kr~K~~~~m~~ 36 (37)
T 2rdd_B 24 QQKRTKEHKKLMD 36 (37)
T ss_dssp HHHHHHHHTTGGG
T ss_pred HHHHHHHHHHHHh
Confidence 4577777777644
No 5
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=7.07 E-value=2.9e+02 Score=20.34 Aligned_cols=16 Identities=19% Similarity=0.200 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHhcCcc
Q 037863 614 CVGSLVVYLWHKRNPK 629 (672)
Q Consensus 614 ~iG~li~~~~~r~~~~ 629 (672)
.++..+.++||||+.+
T Consensus 25 ii~~~~~~~~RRRr~~ 40 (44)
T 2l2t_A 25 IVGLTFAVYVRRKSIK 40 (44)
T ss_dssp HHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHhhhhhhh
Confidence 3344455667766543
No 6
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=6.90 E-value=2.8e+02 Score=20.38 Aligned_cols=16 Identities=13% Similarity=0.067 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHhcCcc
Q 037863 614 CVGSLVVYLWHKRNPK 629 (672)
Q Consensus 614 ~iG~li~~~~~r~~~~ 629 (672)
.+..++.++||||+.+
T Consensus 26 ii~~~~~~~~RRr~~~ 41 (44)
T 2ks1_B 26 VVALGIGLFMRRRHIV 41 (44)
T ss_dssp HHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHhhhhHhh
Confidence 4445556677776543
No 7
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=6.84 E-value=1e+02 Score=21.50 Aligned_cols=9 Identities=56% Similarity=0.848 Sum_probs=6.3
Q ss_pred CCeeecccC
Q 037863 663 PPICMKFLD 671 (672)
Q Consensus 663 ~~~c~~~~~ 671 (672)
=|+|||.+.
T Consensus 8 CP~C~~~l~ 16 (34)
T 3mjh_B 8 CPQCMKSLG 16 (34)
T ss_dssp CTTTCCEES
T ss_pred CcHHHHHcC
Confidence 378888764
No 8
>1kil_E Complexin I snare-complex binding region; helix bound to four helix bundle, membrane protein; 2.30A {Rattus norvegicus} SCOP: h.1.15.1
Probab=6.47 E-value=1.4e+02 Score=22.35 Aligned_cols=16 Identities=31% Similarity=0.453 Sum_probs=11.1
Q ss_pred ChHHHHHHHhhhcccc
Q 037863 2 QEEKEKKEIEREDAEE 17 (672)
Q Consensus 2 ~~~~~~~~~~~~~~~~ 17 (672)
|||+.|+.|.+|.++-
T Consensus 21 aEe~Rk~Kh~kmE~eR 36 (49)
T 1kil_E 21 AEEERKAKYAKMEAER 36 (49)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5677777777777653
No 9
>3arc_J Photosystem II reaction center protein J; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_J* 3a0b_J* 3a0h_J* 2axt_J* 3bz1_J* 3bz2_J* 3kzi_J* 3prq_J* 3prr_J*
Probab=6.33 E-value=4.9e+02 Score=18.76 Aligned_cols=25 Identities=36% Similarity=0.598 Sum_probs=19.8
Q ss_pred HHHHHHhHhHHHHHHHHhhhhcc-CC
Q 037863 508 VIGTAIGCVVAPISFLLFYKAFD-VG 532 (672)
Q Consensus 508 liG~~vga~v~~~v~~L~~~aY~-i~ 532 (672)
++|++.|..+...+=..|+..|. ++
T Consensus 12 lvgtv~G~~vi~~~giFfyGsYsGlG 37 (40)
T 3arc_J 12 IVATVAGMGVIVIVGLFFYGAYAGLG 37 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSSTT
T ss_pred eeeeehhhhhhheeeEEEeecccccC
Confidence 68888888887777778888884 65
No 10
>3mk7_C Cytochrome C oxidase, CBB3-type, subunit P; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}
Probab=5.95 E-value=1.3e+03 Score=22.91 Aligned_cols=14 Identities=14% Similarity=0.247 Sum_probs=8.9
Q ss_pred hcCCChhHHHHHHH
Q 037863 383 LRENIPMWIGVAGY 396 (672)
Q Consensus 383 ~~~~ip~~~~~~gl 396 (672)
.++.+|.||...-+
T Consensus 50 ~~nplp~ww~~~f~ 63 (311)
T 3mk7_C 50 YDNPLPRWWFLLFI 63 (311)
T ss_dssp CCCCCCHHHHHHHH
T ss_pred ccCCCChHHHHHHH
Confidence 36678888764433
Done!