Query 037863
Match_columns 672
No_of_seqs 137 out of 598
Neff 6.1
Searched_HMMs 13730
Date Mon Mar 25 08:10:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037863.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/037863hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1q90l_ f.23.24.1 (L:) PetL su 27.3 11 0.00078 23.7 1.2 19 46-64 7-25 (32)
2 d1v54l_ f.23.6.1 (L:) Mitochon 11.0 1.1E+02 0.0077 21.1 3.3 13 166-178 24-36 (46)
3 d2axtj1 f.23.32.1 (J:7-40) Pho 10.5 1.3E+02 0.0094 19.2 3.4 25 508-532 6-31 (34)
4 d1diha2 d.81.1.3 (A:131-240) D 7.5 80 0.0058 25.5 1.8 17 186-202 32-50 (110)
5 d1fx8a_ f.19.1.1 (A:) Glycerol 6.5 2.8E+02 0.02 24.9 5.6 20 504-523 85-104 (254)
6 d1u19a_ f.13.1.2 (A:) Rhodopsi 5.0 2E+02 0.015 25.8 3.5 15 515-529 299-313 (348)
7 d2csba1 a.60.2.4 (A:351-409) T 4.5 79 0.0058 22.0 -0.0 14 7-20 35-48 (59)
8 d1yl7a2 d.81.1.3 (A:106-214) D 3.5 1.2E+02 0.0085 24.4 0.2 16 186-201 30-47 (109)
9 d1vm6a2 d.81.1.3 (A:97-182) Di 3.3 1.7E+02 0.012 22.5 0.9 12 186-197 34-45 (86)
10 d1otsa_ f.20.1.1 (A:) Clc chlo 2.8 1.7E+03 0.12 20.6 14.3 25 474-498 31-55 (444)
No 1
>d1q90l_ f.23.24.1 (L:) PetL subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=27.32 E-value=11 Score=23.73 Aligned_cols=19 Identities=26% Similarity=0.427 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHhhheeee
Q 037863 46 VVSILLGIVYSVIVMKLNL 64 (672)
Q Consensus 46 vvG~~lg~l~~asnlylGL 64 (672)
-+|.++|++.-..+.|+||
T Consensus 7 yvglligal~~tlgiylgl 25 (32)
T d1q90l_ 7 YVGLLIGALVFTLGIYLGL 25 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3789999999889999986
No 2
>d1v54l_ f.23.6.1 (L:) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) {Cow (Bos taurus) [TaxId: 9913]}
Probab=11.02 E-value=1.1e+02 Score=21.10 Aligned_cols=13 Identities=23% Similarity=0.365 Sum_probs=10.4
Q ss_pred HHHHHhhHhHHhh
Q 037863 166 VVCFVGLFVLIPL 178 (672)
Q Consensus 166 ~~~~lGv~favPL 178 (672)
.+.+||.-|+.|+
T Consensus 24 m~~~fGsgfa~PF 36 (46)
T d1v54l_ 24 MTLFFGSGFAAPF 36 (46)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHhccccchH
Confidence 4678899999885
No 3
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=10.50 E-value=1.3e+02 Score=19.24 Aligned_cols=25 Identities=36% Similarity=0.598 Sum_probs=20.1
Q ss_pred HHHHHHhHhHHHHHHHHhhhhcc-CC
Q 037863 508 VIGTAIGCVVAPISFLLFYKAFD-VG 532 (672)
Q Consensus 508 liG~~vga~v~~~v~~L~~~aY~-i~ 532 (672)
++|++.|..+...+=..|+.+|. ++
T Consensus 6 lv~tv~G~~vi~~vG~FfYGsYsGlG 31 (34)
T d2axtj1 6 IVATVAGMGVIVIVGLFFYGAYAGLG 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSTT
T ss_pred EeeehhhhhhHhheeeeeeeeecccc
Confidence 68888888888888778888884 65
No 4
>d1diha2 d.81.1.3 (A:131-240) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}
Probab=7.53 E-value=80 Score=25.47 Aligned_cols=17 Identities=35% Similarity=0.344 Sum_probs=14.0
Q ss_pred CCcCChhhHH--HHHHHhc
Q 037863 186 LKLTYPSGLA--TAVLING 202 (672)
Q Consensus 186 ~~L~FPsGtA--tA~~I~~ 202 (672)
.|+-.||||| +|+.|..
T Consensus 32 ~K~DaPSGTAl~lae~i~~ 50 (110)
T d1diha2 32 HKVDAPSGTALAMGEAIAH 50 (110)
T ss_dssp TCCSSSCHHHHHHHHHHHH
T ss_pred cCCCCCchHHHHHHHHHHH
Confidence 8999999999 4777753
No 5
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]}
Probab=6.53 E-value=2.8e+02 Score=24.91 Aligned_cols=20 Identities=15% Similarity=0.188 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhHhHHHHHHH
Q 037863 504 FLNQVIGTAIGCVVAPISFL 523 (672)
Q Consensus 504 f~aQliG~~vga~v~~~v~~ 523 (672)
..+|++|.++|+.+.-.+|.
T Consensus 85 i~aQ~lGa~~ga~l~~~~~~ 104 (254)
T d1fx8a_ 85 IVSQVAGAFCAAALVYGLYY 104 (254)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 45899999999988876653
No 6
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.98 E-value=2e+02 Score=25.78 Aligned_cols=15 Identities=27% Similarity=0.718 Sum_probs=7.8
Q ss_pred HhHHHHHHHHhhhhc
Q 037863 515 CVVAPISFLLFYKAF 529 (672)
Q Consensus 515 a~v~~~v~~L~~~aY 529 (672)
+.+.|.+|..+++.|
T Consensus 299 s~iNPiIY~~~~~~f 313 (348)
T d1u19a_ 299 AVYNPVIYIMMNKQF 313 (348)
T ss_dssp GTHHHHHHHHTCHHH
T ss_pred HHHHHHHHHhcCHHH
Confidence 445555555555444
No 7
>d2csba1 a.60.2.4 (A:351-409) Topoisomerase V {Methanopyrus kandleri [TaxId: 2320]}
Probab=4.52 E-value=79 Score=21.96 Aligned_cols=14 Identities=36% Similarity=0.204 Sum_probs=10.1
Q ss_pred HHHHhhhccccccc
Q 037863 7 KKEIEREDAEEDDH 20 (672)
Q Consensus 7 ~~~~~~~~~~~~~~ 20 (672)
-||||||-+|.--|
T Consensus 35 leeiermyeegrls 48 (59)
T d2csba1 35 LEEIERMYEEGRLS 48 (59)
T ss_dssp HHHHHHHHHHTSSC
T ss_pred HHHHHHHHHccccc
Confidence 47899998876443
No 8
>d1yl7a2 d.81.1.3 (A:106-214) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=3.54 E-value=1.2e+02 Score=24.38 Aligned_cols=16 Identities=50% Similarity=0.509 Sum_probs=12.9
Q ss_pred CCcCChhhHHH--HHHHh
Q 037863 186 LKLTYPSGLAT--AVLIN 201 (672)
Q Consensus 186 ~~L~FPsGtAt--A~~I~ 201 (672)
.|.-+|||||. |+.|.
T Consensus 30 ~K~DaPSGTAl~la~~i~ 47 (109)
T d1yl7a2 30 HKADAPSGTAARTAKLIA 47 (109)
T ss_dssp TCCEESCHHHHHHHHHHH
T ss_pred cCCCCCchhHHHHHHHHH
Confidence 89999999995 55554
No 9
>d1vm6a2 d.81.1.3 (A:97-182) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}
Probab=3.26 E-value=1.7e+02 Score=22.53 Aligned_cols=12 Identities=42% Similarity=0.462 Sum_probs=10.6
Q ss_pred CCcCChhhHHHH
Q 037863 186 LKLTYPSGLATA 197 (672)
Q Consensus 186 ~~L~FPsGtAtA 197 (672)
.|.-.|||||..
T Consensus 34 ~K~DaPSGTAl~ 45 (86)
T d1vm6a2 34 FKKDAPSGTAIL 45 (86)
T ss_dssp TCCCSSCHHHHH
T ss_pred cCCCccchhHHH
Confidence 899999999963
No 10
>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli [TaxId: 562]}
Probab=2.84 E-value=1.7e+03 Score=20.64 Aligned_cols=25 Identities=16% Similarity=0.175 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhcCC
Q 037863 474 GLVKSVVSVACILMQDFKTAHCTYT 498 (672)
Q Consensus 474 ~i~~~~a~qA~dl~qDlKtG~Llga 498 (672)
+++...-.+.-|.+||+|.+++...
T Consensus 31 gl~~~~~~~~i~~~~~~~~~~~~~~ 55 (444)
T d1otsa_ 31 GLAAVAFDKGVAWLQNQRMGALVHT 55 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444555678889999998876643
Done!