Query 037870
Match_columns 511
No_of_seqs 357 out of 2933
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 08:18:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037870.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037870hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 100.0 2.2E-32 7.4E-37 273.9 23.1 360 59-440 30-411 (451)
2 3o7q_A L-fucose-proton symport 100.0 1.5E-29 5.3E-34 252.1 30.3 341 68-440 36-409 (438)
3 4gc0_A D-xylose-proton symport 100.0 1.7E-27 5.7E-32 241.1 27.7 398 68-484 22-477 (491)
4 4aps_A DI-OR tripeptide H+ sym 100.0 4.9E-27 1.7E-31 237.6 26.7 351 76-437 31-447 (491)
5 2gfp_A EMRD, multidrug resista 100.0 8.5E-29 2.9E-33 241.5 10.1 343 68-440 10-354 (375)
6 2cfq_A Lactose permease; trans 99.9 2.2E-28 7.5E-33 241.9 9.3 366 76-468 25-397 (417)
7 2xut_A Proton/peptide symporte 99.9 1.4E-22 4.7E-27 206.7 19.1 156 76-239 30-196 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.4 1.5E-12 5.1E-17 129.6 16.5 166 71-241 265-433 (451)
9 4aps_A DI-OR tripeptide H+ sym 99.1 5.5E-10 1.9E-14 112.4 15.8 123 308-440 49-174 (491)
10 3o7q_A L-fucose-proton symport 99.1 4.9E-10 1.7E-14 110.9 14.8 149 76-236 276-427 (438)
11 2cfq_A Lactose permease; trans 99.1 5.7E-10 1.9E-14 109.7 11.8 159 79-246 241-405 (417)
12 2xut_A Proton/peptide symporte 99.0 2.6E-09 8.9E-14 108.3 15.6 142 310-468 51-196 (524)
13 2gfp_A EMRD, multidrug resista 99.0 9.6E-10 3.3E-14 106.4 10.3 123 308-440 30-152 (375)
14 4gc0_A D-xylose-proton symport 99.0 9.1E-10 3.1E-14 110.7 8.1 163 311-473 53-223 (491)
15 3d9s_A Aquaporin-5, AQP-5; aqu 34.1 62 0.0021 28.5 5.6 13 457-469 212-224 (266)
16 2dw3_A Intrinsic membrane prot 33.1 56 0.0019 22.1 3.8 34 216-249 28-62 (77)
17 2b6o_A Aquaporin-0, lens fiber 23.6 62 0.0021 28.5 3.7 22 449-470 201-222 (263)
18 2jln_A MHP1; hydantoin, transp 23.1 2.7E+02 0.0092 27.0 8.6 22 418-439 361-382 (501)
19 2nrg_A Intrinsic membrane prot 22.7 1.1E+02 0.0037 21.0 3.7 36 214-249 27-63 (82)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=2.2e-32 Score=273.86 Aligned_cols=360 Identities=11% Similarity=0.018 Sum_probs=262.7
Q ss_pred HHHHHHHHhhcccccccchhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHH
Q 037870 59 IFGIILVYGLSQGFSGSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVA 137 (511)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~ 137 (511)
+......+ +..++........+|.+.++ + .+..+.|++.+++.++..+ ++++|+++||+ +||++++++.++
T Consensus 30 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-----g~r~~l~~~~~~ 101 (451)
T 1pw4_A 30 FLGIFFGY-AAYYLVRKNFALAMPYLVEQ-G-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-----NPRVFLPAGLIL 101 (451)
T ss_dssp HHHHHHHH-HHHHHHHTSHHHHHHHTTSS-T-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-----CHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHH-h-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-----CchHHHHHHHHH
Confidence 34444444 55555555666677877666 8 9999999999999999888 99999999996 788899999999
Q ss_pred HHHHHHHHHh----cCChhHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHH
Q 037870 138 GCVSALMFSL----LGKLPIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGF 213 (511)
Q Consensus 138 ~~~~~~~~~~----~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~ 213 (511)
.+++.+++++ +++... +++.+++.|++.+...+...+++.|..+ +++|+++.++.+.+.++|.++||.++++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~--l~~~~~l~G~~~~~~~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~~g~~~g~~~~~~ 177 (451)
T 1pw4_A 102 AAAVMLFMGFVPWATSSIAV--MFVLLFLCGWFQGMGWPPCGRTMVHWWS--QKERGGIVSVWNCAHNVGGGIPPLLFLL 177 (451)
T ss_dssp HHHHHHHHHHCHHHHSSSSH--HHHHHHHHHHHHHHTHHHHHHHHHTTCT--TTHHHHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred HHHHHHHHHhhhhccccHHH--HHHHHHHHHHHhhhccchHHHHHHHHCC--chhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998 777654 5677999999999999999999999984 4569999999999999999999999999
Q ss_pred hhccCC-hhhHHHHhhhHHHHH-HHHHhhcccccccccchhhh---hh-------hhhHHHHHHH--HHHhccCCcchHH
Q 037870 214 SVNHLG-PQGALGVLAIPPVLL-IVLGFVIYETRSANIRSEKK---KV-------MENVEFTTKG--MYKSMKCPQVWKP 279 (511)
Q Consensus 214 l~~~~g-w~~~f~~~~~~~~i~-~~~~~~~~e~~~~~~~~~~~---~~-------~~~~~~~~~~--~~~~l~~~~~~~~ 279 (511)
+.+..| ||+.|++.+++.++. ++.++++||++.+....+++ +. .++.+...++ .++.+++|.++..
T Consensus 178 l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (451)
T 1pw4_A 178 GMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYI 257 (451)
T ss_dssp HHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhhhhcccccccchHHHHHcCHHHHHH
Confidence 998898 999999998887764 44556777765432111000 00 0000000111 3567788888877
Q ss_pred HHHHHHHhhhccCcccceeeeeecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccC--CChHHHHHHHHHHHHhh
Q 037870 280 SLYMYLSLAVSISTHEGQFYWYTDPKAGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDY--PLRNLLFSAQLLYGISG 357 (511)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~--~~~~~l~~~~~~~~~~~ 357 (511)
.+..++............+.+..+. .|++..+.|.+.....++.+++.++.+++.||+ ++|+.+..+..+....+
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~ 334 (451)
T 1pw4_A 258 AIANVFVYLLRYGILDWSPTYLKEV---KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIA 334 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHBTTB---SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Confidence 6665555443333333333344332 689999999999999999999999999999999 99888877655544222
Q ss_pred hhhHHHhhhcccccCCCchhhhhHHHHHHHHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHH-HHhHHHHHHHHHH
Q 037870 358 MLDLIFILRWNLALGIPDSFFVITEQCVSHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSI-GSLTSKWGGGIVL 436 (511)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~l-g~~~g~~l~g~l~ 436 (511)
+...... .....+.......+.++..+........+..|.+|++.+|+++|+.+...++ |..+++.+.|.+.
T Consensus 335 ~~~~~~~-------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~ 407 (451)
T 1pw4_A 335 TIVYWMN-------PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTV 407 (451)
T ss_dssp HHHTTSC-------CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHh-------cccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2111110 0112233333334455555555666678889999999999999999999999 9999999999999
Q ss_pred HHhc
Q 037870 437 HLLH 440 (511)
Q Consensus 437 ~~~g 440 (511)
+..|
T Consensus 408 ~~~g 411 (451)
T 1pw4_A 408 DFFG 411 (451)
T ss_dssp HSSC
T ss_pred HhcC
Confidence 8655
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.97 E-value=1.5e-29 Score=252.15 Aligned_cols=341 Identities=9% Similarity=0.065 Sum_probs=252.3
Q ss_pred hcccccccchhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHH-
Q 037870 68 LSQGFSGSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMF- 145 (511)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~- 145 (511)
+..++......+.+|.+.++ +|++..+.|++.+++.+++.+ +|++|+++||+ +||+.++.+.++.+++.+++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-----g~r~~l~~~~~~~~~~~~~~~ 109 (438)
T 3o7q_A 36 FLWAVANNLNDILLPQFQQA-FTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-----SYKAGIITGLFLYALGAALFW 109 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-SCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-----CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHH
Confidence 55555555666677776554 999999999999999999887 99999999996 78889999999999998888
Q ss_pred --HhcCChhHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhh-ccCC---
Q 037870 146 --SLLGKLPIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSV-NHLG--- 219 (511)
Q Consensus 146 --~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~-~~~g--- 219 (511)
+++++.+. +++.+++.|++.+...+...+++.|..+ +++|++..++.+.+.++|.++|+.+++.+. +..+
T Consensus 110 ~~~~~~~~~~--l~~~~~l~G~~~~~~~~~~~~~~~~~~~--~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~ 185 (438)
T 3o7q_A 110 PAAEIMNYTL--FLVGLFIIAAGLGCLETAANPFVTVLGP--ESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQS 185 (438)
T ss_dssp HHHHTTCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHSSC--STTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCC
T ss_pred hccccccHHH--HHHHHHHHHhhHHHhhhhHHHHHHHHcC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 77776554 6788999999999999999999999984 466999999999999999999999999998 5554
Q ss_pred ----------------------hhhHHHHhhhHHHHHHHHHhhc--ccccccccchhhhhhhhhHHHHHHHHHHhccCCc
Q 037870 220 ----------------------PQGALGVLAIPPVLLIVLGFVI--YETRSANIRSEKKKVMENVEFTTKGMYKSMKCPQ 275 (511)
Q Consensus 220 ----------------------w~~~f~~~~~~~~i~~~~~~~~--~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 275 (511)
||+.|++.++..++..+..++. ||++++.++++++ + +..+..++.+|+|.
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~---~---~~~~~~~~~~~~~~ 259 (438)
T 3o7q_A 186 QDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAKQ---G---SFSASLSRLARIRH 259 (438)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCSST---T---SHHHHHHHHTTCSH
T ss_pred ccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccccc---c---chhhhHHHHHhChH
Confidence 9999988877766644433333 4443322111101 1 11245667888999
Q ss_pred chHHHHHHHHHhhhccCcccceeee-eecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHH
Q 037870 276 VWKPSLYMYLSLAVSISTHEGQFYW-YTDPKAGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYG 354 (511)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~ 354 (511)
++...+..++............+.+ ..+. +|+++.+.+.+.....++.+++.++.+++.||+++|+.+..+.++..
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~ 336 (438)
T 3o7q_A 260 WRWAVLAQFCYVGAQTACWSYLIRYAVEEI---PGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAM 336 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS---TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcc---CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 8887776655544333332333344 4443 58999999999988999999999999999999999998888766555
Q ss_pred HhhhhhHHHhhhcccccCCCchhhhhHHHHHHHHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHH
Q 037870 355 ISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGI 434 (511)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~ 434 (511)
+..+... . .+..... ....+.+++.+...+....+..|..|++ +++..++.. ...+|..++|.+.|.
T Consensus 337 ~~~~~~~-~---------~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~ 403 (438)
T 3o7q_A 337 ALCLISA-F---------AGGHVGL-IALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGF 403 (438)
T ss_dssp HHHHHHH-H---------CCHHHHH-HHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHH
T ss_pred HHHHHHH-H---------cCCcHHH-HHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHH
Confidence 4322211 1 1111111 2223455566666667777778888866 888888777 778999999999999
Q ss_pred HHHHhc
Q 037870 435 VLHLLH 440 (511)
Q Consensus 435 l~~~~g 440 (511)
+.+..|
T Consensus 404 l~~~~g 409 (438)
T 3o7q_A 404 VSDAAG 409 (438)
T ss_dssp HHHHHT
T ss_pred HHHHhc
Confidence 999887
No 3
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.96 E-value=1.7e-27 Score=241.10 Aligned_cols=398 Identities=14% Similarity=0.120 Sum_probs=248.2
Q ss_pred hcccccccchhhhhhhhhhccc--------CCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHH
Q 037870 68 LSQGFSGSFSKVVTDYYWKDVQ--------KVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAG 138 (511)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~--------g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~ 138 (511)
+..|++.+..+..+|.+..+ + +.+..+.|++.+++.++..+ .+++|+++||+ +||+.++++.+++
T Consensus 22 ~~~Gyd~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~-----GRk~~l~~~~~l~ 95 (491)
T 4gc0_A 22 LLFGYDTAVISGTVESLNTV-FVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRF-----GRRDSLKIAAVLF 95 (491)
T ss_dssp HHHHHHHHGGGGTHHHHHHH-HTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHT-----CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-hcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCHHHHHHHHHHH
Confidence 55566555555566654332 3 23456778999999999988 88899999995 7999999999999
Q ss_pred HHHHHHHHhcC----------------ChhHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHH
Q 037870 139 CVSALMFSLLG----------------KLPIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAA 202 (511)
Q Consensus 139 ~~~~~~~~~~~----------------~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 202 (511)
.++.+++++++ ..+...+++.|+++|+|.+...+....++.|.. ++++|++..+..+.+..+
T Consensus 96 ~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~--p~~~rg~~~~~~~~~~~~ 173 (491)
T 4gc0_A 96 FISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELA--PAHIRGKLVSFNQFAIIF 173 (491)
T ss_dssp HHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--CGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--CHHhhhhhHHhhhhhhhh
Confidence 99999988532 113445788999999999999999999999998 446799999999999999
Q ss_pred HHHHHHHHHHHhhcc--------CChhhHHHHhhhHHHHHHHHHhhcccccccccchhhh----h----------hhh--
Q 037870 203 GSLIGYAVSGFSVNH--------LGPQGALGVLAIPPVLLIVLGFVIYETRSANIRSEKK----K----------VME-- 258 (511)
Q Consensus 203 G~~lg~~~~g~l~~~--------~gw~~~f~~~~~~~~i~~~~~~~~~e~~~~~~~~~~~----~----------~~~-- 258 (511)
|.++++.++..+... .+||..+.+..+..++..+..+++||+++....+.+. + ..+
T Consensus 174 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~ 253 (491)
T 4gc0_A 174 GQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAV 253 (491)
T ss_dssp HHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHH
Confidence 999999888776542 3577787777777777777778899987542111000 0 000
Q ss_pred -hHHHHHH------HHHHhccCCcchHHHHHHHHHhhhccCcccceeeeeecCCCCCCCChhHHHHHHHHHHHHHHHHHH
Q 037870 259 -NVEFTTK------GMYKSMKCPQVWKPSLYMYLSLAVSISTHEGQFYWYTDPKAGPAFSQEFVGLIYALGAVASMIGVL 331 (511)
Q Consensus 259 -~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~ 331 (511)
+.++... .....++.+.........++...... ....+|........+.+............+..+++.+
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (491)
T 4gc0_A 254 QEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGI---NVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTV 330 (491)
T ss_dssp HHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCH---HHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhh---hHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHH
Confidence 0000000 01112222322222222222221111 1111121111111456666666666777788889999
Q ss_pred HHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHHHHHHhhHhHH-HHHHhhcCCCcch
Q 037870 332 IYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIISKIRWIPM-IVLSTRLCPIGIE 410 (511)
Q Consensus 332 ~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~ 410 (511)
+.+++.||+|+|+.+..+.....+..+....... ........+....+.....+....|. ..+.+|+.|.+.|
T Consensus 331 ~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R 404 (491)
T 4gc0_A 331 LAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFY------TQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIR 404 (491)
T ss_dssp HHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHH------TTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTH
T ss_pred HHHHHHHhhcCcchhccchHHHHHHHHHHHHHHh------cccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHH
Confidence 9999999999999988876665543332221111 01111222222223333334444443 4677899999999
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHH-HHhhcCCCCcCcCccchhh
Q 037870 411 GTFFALLMCIDSIGSLTSKWGGGIVLHLLHVTRTDFTNLWLVILIRNVLRLATLG-LIFLVPKADQSDELIPVDL 484 (511)
Q Consensus 411 g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 484 (511)
++++|+.++.+++++.+++.+.+.+.+...... .+. ....+.+.+++.+++.+ ..+++||+|++..+..++.
T Consensus 405 ~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~-~~~-~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~ 477 (491)
T 4gc0_A 405 GKALAIAVAAQWLANYFVSWTFPMMDKNSWLVA-HFH-NGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEAL 477 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHH-HHT-TCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhh-hhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHH
Confidence 999999999999999999998887755322110 000 11233344444444444 4458999998765433333
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.96 E-value=4.9e-27 Score=237.62 Aligned_cols=351 Identities=12% Similarity=0.041 Sum_probs=224.6
Q ss_pred chhhhhhhhhhcc-----cCCChHHHHHHHHHhhcchhh-hhHHHhhhcc-cccCCCCCchHHHHHHHHHHHHHHHHHhc
Q 037870 76 FSKVVTDYYWKDV-----QKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDA-FPIKGYHRRPYFVIAGVAGCVSALMFSLL 148 (511)
Q Consensus 76 ~~~~~~~~~~~~~-----~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~-~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~ 148 (511)
.....++.|++++ +|.+..+.|++.+++.++..+ ++++|+++|| + +||+.++.+.++..++.++++++
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-----g~r~~~~~~~~~~~~~~~~~~~~ 105 (491)
T 4aps_A 31 GMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-----GARPAVFWGGVLIMLGHIVLALP 105 (491)
T ss_dssp HHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-----CHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----cchHHHHHHHHHHHHHHHHHHHh
Confidence 3445667777776 999999999999999999887 9999999999 6 68889999999999999999998
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHhh
Q 037870 149 GKLPIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGALGVLA 228 (511)
Q Consensus 149 ~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~gw~~~f~~~~ 228 (511)
++... +++.+++.|++.+...+...+++.|..+++++.|++..++++.+.++|..+||.+++.+.++.|||+.|++.+
T Consensus 106 ~~~~~--~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~ 183 (491)
T 4aps_A 106 FGASA--LFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAA 183 (491)
T ss_dssp CSTTH--HHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred hhHHH--HHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 87654 5677889999999999999999999986544457888888999999999999999999999999999999987
Q ss_pred hHHHHHHHHHhhc-ccccccc----cch-hhhhhhhhHHH----------------------------------------
Q 037870 229 IPPVLLIVLGFVI-YETRSAN----IRS-EKKKVMENVEF---------------------------------------- 262 (511)
Q Consensus 229 ~~~~i~~~~~~~~-~e~~~~~----~~~-~~~~~~~~~~~---------------------------------------- 262 (511)
+..++..+..++. ++..++. .+. ++++..+..+.
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (491)
T 4aps_A 184 IGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVF 263 (491)
T ss_dssp HHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHH
Confidence 7666544333322 2211110 000 00000000000
Q ss_pred ----HHHHHH--HhccCCc--chHHHHHHHHHhhhccCcccceeeeeecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 037870 263 ----TTKGMY--KSMKCPQ--VWKPSLYMYLSLAVSISTHEGQFYWYTDPKAGPAFSQEFVGLIYALGAVASMIGVLIYH 334 (511)
Q Consensus 263 ----~~~~~~--~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~ 334 (511)
..++.. ...+++. .+...+..++............+.+..+. .+.+....+.+.....++.+++..+.+
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (491)
T 4aps_A 264 YFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAER---VDSSWFPVSWFQSLNPLFIMLYTPFFA 340 (491)
T ss_dssp HHHHHC------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHS---CCCSSSCSGGGTTHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHH---hccCccCHHHHhccchHHHHHHHHHHH
Confidence 000000 0011111 12222222222222222222333333332 344434455555667777888888899
Q ss_pred HHhccCCChHHHH-----HHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHHHHHHhhHhHHHHHHhhcCCCcc
Q 037870 335 KTLKDYPLRNLLF-----SAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIISKIRWIPMIVLSTRLCPIGI 409 (511)
Q Consensus 335 ~l~~r~~~~~~l~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 409 (511)
++.||+++|+... .+.++..++.+.......... .......+..+....+.++..+...++...+..|..|++.
T Consensus 341 ~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~ 419 (491)
T 4aps_A 341 WLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYG-TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF 419 (491)
T ss_dssp HHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCC-CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC
T ss_pred HHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH
Confidence 9999998875543 333333332222111110000 0001122333334445566666667778889999999999
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 037870 410 EGTFFALLMCIDSIGSLTSKWGGGIVLH 437 (511)
Q Consensus 410 ~g~~~gl~~~~~~lg~~~g~~l~g~l~~ 437 (511)
||+++|+.+...++|..+++.+.+.+.+
T Consensus 420 ~g~~~g~~~~~~~~g~~i~~~~~~~~~~ 447 (491)
T 4aps_A 420 NSQMMSMWFLSSSVGSALNAQLVTLYNA 447 (491)
T ss_dssp SSSSTHHHHHHHHHHHHHHHHHGGGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999887654
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.95 E-value=8.5e-29 Score=241.53 Aligned_cols=343 Identities=13% Similarity=0.073 Sum_probs=245.4
Q ss_pred hcccccccchhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHH
Q 037870 68 LSQGFSGSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFS 146 (511)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~ 146 (511)
+..++......+.+|.+.++ +|.+..+.|++.++..++..+ +|++|+++||+ +||+.++.+.++..++.++++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-----g~r~~~~~~~~~~~~~~~~~~ 83 (375)
T 2gfp_A 10 AVGQMAQTIYIPAIADMARD-LNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-----GRRPVILVGMSIFMLATLVAV 83 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-SSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-----CCCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CCchhHHHHHHHHHHHHHHHH
Confidence 34444555556677776555 999999999999999999887 99999999996 677788888888889888888
Q ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHH
Q 037870 147 LLGKLPIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGALGV 226 (511)
Q Consensus 147 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~gw~~~f~~ 226 (511)
++++.. .++..+++.+++.+...+...+++.|..+ +++|++..++.+.+.++|..++|.+++++.++.|||+.|++
T Consensus 84 ~~~~~~--~l~~~~~l~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 159 (375)
T 2gfp_A 84 TTSSLT--VLIAASAMQGMGTGVGGVMARTLPRDLYE--RTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLF 159 (375)
T ss_dssp HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred HhccHH--HHHHHHHHHHHHHHhhhhhHHHHHHHHCC--HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHH
Confidence 877543 46778999999999999999999999874 46699999999999999999999999999998899999999
Q ss_pred hhhHHHHHHH-HHhhcccccccccchhhhhhhhhHHHHHHHHHHhccCCcchHHHHHHHHHhhhccCcccceeeeeecCC
Q 037870 227 LAIPPVLLIV-LGFVIYETRSANIRSEKKKVMENVEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTHEGQFYWYTDPK 305 (511)
Q Consensus 227 ~~~~~~i~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (511)
.++..++..+ ..+++||++++++++ ++. .++.++.+|+|.++...+..++............+.+..+.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 229 (375)
T 2gfp_A 160 LLVLCAGVTFSMARWMPETRPVDAPR--TRL-------LTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAV- 229 (375)
T ss_dssp HHHHHHHHHCCCCCSSCCCSTTTCCC--CCT-------TTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHH-
T ss_pred HHHHHHHHHHHHHHHCcccCCCCccc--ccH-------HHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 8888777554 556677765443221 100 01234455667666665555444433322222233333332
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHH
Q 037870 306 AGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCV 385 (511)
Q Consensus 306 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (511)
.|+++.+.|.+.....++.+++.++.+++.||.+++ +..+..+....++......... .++.+..+....+
T Consensus 230 --~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l 300 (375)
T 2gfp_A 230 --LGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLMWIPDWFG-----VMNVWTLLVPAAL 300 (375)
T ss_dssp --HHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSSSHHHHHH-----HHHHHHHHHHHHH
T ss_pred --hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhc-----cccHHHHHHHHHH
Confidence 578888999999888899999999999999987762 2222222122111111111000 0112222333445
Q ss_pred HHHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 037870 386 SHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLH 440 (511)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g 440 (511)
.++..+...+.......|..| +++|+++|+.+...++|..+++.+.|.+.+..+
T Consensus 301 ~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~ 354 (375)
T 2gfp_A 301 FFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQ 354 (375)
T ss_dssp HHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 566667777777888889998 899999999999999999999999999987644
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.95 E-value=2.2e-28 Score=241.89 Aligned_cols=366 Identities=12% Similarity=0.081 Sum_probs=212.7
Q ss_pred chhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHH---HHHHhcCCh
Q 037870 76 FSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSA---LMFSLLGKL 151 (511)
Q Consensus 76 ~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~---~~~~~~~~~ 151 (511)
...+.+|.++++++|.|+.++|++.+...++..+ +|++|+++||+ +||+.++.+..+..++. ....+.+..
T Consensus 25 ~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-----Grr~~l~~~~~~~~~~~~~~~~~~~~~~~ 99 (417)
T 2cfq_A 25 AYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-----GLRKYLLWIITGMLVMFAPFFIFIFGPLL 99 (417)
T ss_dssp HHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-----TTCCHHHHHHHHTTSCHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455688888877999999999999999999887 99999999996 56667766665543321 111111100
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHhhhHH
Q 037870 152 PIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGALGVLAIPP 231 (511)
Q Consensus 152 ~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~gw~~~f~~~~~~~ 231 (511)
. ......+.+.+++.+.......+...+..++.+++++...+..+.+.++|..++|.+++++.+ .+||+.|++.++..
T Consensus 100 ~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~ 177 (417)
T 2cfq_A 100 Q-YNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCA 177 (417)
T ss_dssp H-TTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTT
T ss_pred H-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHH
Confidence 0 001112223233222222222233333332222346767777777788999999999999987 58999999877765
Q ss_pred HHHHHHHhhccccccccc-chhh-hhhhhhHHHHHHHHHHhccCCcchHHHHHHHHHhhhccCcccceeeeeecCCCCCC
Q 037870 232 VLLIVLGFVIYETRSANI-RSEK-KKVMENVEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTHEGQFYWYTDPKAGPA 309 (511)
Q Consensus 232 ~i~~~~~~~~~e~~~~~~-~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 309 (511)
++..+..++.+|++++.. +.++ ++..++ ...++.++.+++|.++...+..+.............+.+.....+..+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (417)
T 2cfq_A 178 LILAVLLFFAKTDAPSSATVANAVGANHSA--FSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGE 255 (417)
T ss_dssp TTHHHHSCSSCCCCSCSSCSSSSSSSCCCC--CCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHH
T ss_pred HHHHHHHHHcCccccccccccccccccccc--ccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 544444444443331110 0000 000000 112345567888887766554333222111111112222222211112
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHHHH
Q 037870 310 FSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHII 389 (511)
Q Consensus 310 ~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (511)
.+....|.+..+..++.+++.++.+++.||+++|+.+..+..+..+..+ .... .++.+..+....+.++.
T Consensus 256 ~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~---~~~~-------~~~~~~~~~~~~l~~~~ 325 (417)
T 2cfq_A 256 QGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRII---GSSF-------ATSALEVVILKTLHMFE 325 (417)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH---HHTT-------CCSHHHHHHHTTHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHH---HHHH-------hccHHHHHHHHHHHHHH
Confidence 3345567777777888889999999999999999988776555443211 1110 11222222222233333
Q ss_pred HHhhHhHHHHHHhhcCCCcchHHHHHH-HHHHHHHHHhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHh
Q 037870 390 SKIRWIPMIVLSTRLCPIGIEGTFFAL-LMCIDSIGSLTSKWGGGIVLHLLHVTRTDFTNLWLVILIRNVLRLATLGLIF 468 (511)
Q Consensus 390 ~~~~~~~~~~~~~~~~p~~~~g~~~gl-~~~~~~lg~~~g~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (511)
.+....+...+..|..|++.||+.+|+ ++...++|+.++|.++|.+.+..|+ ...+.+.+++.+++.+...
T Consensus 326 ~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~--------~~~f~~~~~~~l~~~~~~~ 397 (417)
T 2cfq_A 326 VPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGF--------QGAYLVLGLVALGFTLISV 397 (417)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHH--------HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCc--------HHHHHHHHHHHHHHHHHHH
Confidence 444445556788899999999999999 4888889999999999999886542 2334444555555554443
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.89 E-value=1.4e-22 Score=206.71 Aligned_cols=156 Identities=10% Similarity=0.100 Sum_probs=127.7
Q ss_pred chhhhhhhhhhcccC------CChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhc
Q 037870 76 FSKVVTDYYWKDVQK------VQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLL 148 (511)
Q Consensus 76 ~~~~~~~~~~~~~~g------~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~ 148 (511)
.....++.++++++| .+..+.|++.+++.++..+ .+++|+++||+ .+||+.++.+.++.+++.++++++
T Consensus 30 ~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~----~g~r~~~~~~~~~~~~~~~~~~~~ 105 (524)
T 2xut_A 30 GMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRF----FGKYNTILWLSLIYCVGHAFLAIF 105 (524)
T ss_dssp HHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTS----SCSHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcchHHHHHHHHHHHHHHHHHHHh
Confidence 344567777777799 9999999999999999887 89999999994 167888888888999998888888
Q ss_pred C-ChhHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHH---HHHHHHHHHHHHHHHHHHHhhccCChhhHH
Q 037870 149 G-KLPIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQS---LCGFCSAAGSLIGYAVSGFSVNHLGPQGAL 224 (511)
Q Consensus 149 ~-~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~~~G~~lg~~~~g~l~~~~gw~~~f 224 (511)
+ +... +++.+++.+++.+...+...+++.|..++ ++|++..+ +.+.+.++|.++||.+++.+.+..|||+.|
T Consensus 106 ~~~~~~--~~~~~~l~g~~~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f 181 (524)
T 2xut_A 106 EHSVQG--FYTGLFLIALGSGGIKPLVSSFMGDQFDQ--SNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAF 181 (524)
T ss_dssp SSCHHH--HHHHHHHHHHHHHTTHHHHHHHHHHTCST--TTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHH
T ss_pred cccHHH--HHHHHHHHHHhccccchhHHHHHHHHcCc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 7 6543 56778899999999889999999998843 44655444 488999999999999999999999999999
Q ss_pred HHhhhHHHHHHHHHh
Q 037870 225 GVLAIPPVLLIVLGF 239 (511)
Q Consensus 225 ~~~~~~~~i~~~~~~ 239 (511)
++.++..++..+..+
T Consensus 182 ~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 182 GIPGVLMFVATVFFW 196 (524)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 998877666444433
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.44 E-value=1.5e-12 Score=129.59 Aligned_cols=166 Identities=14% Similarity=0.113 Sum_probs=124.1
Q ss_pred cccccchhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHH-HHHHHHHhc
Q 037870 71 GFSGSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGC-VSALMFSLL 148 (511)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~-~~~~~~~~~ 148 (511)
.........+.|.++++.+|.+..+.+++.+...++..+ .++.|+++||+. + +||+.+..+..+.. ++.+++.+.
T Consensus 265 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~ 341 (451)
T 1pw4_A 265 YLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVF--R-GNRGATGVFFMTLVTIATIVYWMN 341 (451)
T ss_dssp HHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--T-TCHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--c-CCchhHHHHHHHHHHHHHHHHHHh
Confidence 333344566788888887999999999999998888777 889999999951 0 45666665555554 666666665
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHH-HHHHHHHHHHHhhccCChhhHHHHh
Q 037870 149 GKLPIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAA-GSLIGYAVSGFSVNHLGPQGALGVL 227 (511)
Q Consensus 149 ~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-G~~lg~~~~g~l~~~~gw~~~f~~~ 227 (511)
++.+........++.+++.+...+....++.|..+ +++|+++.++.+...++ |..++|.+.|++.+..||+..|++.
T Consensus 342 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~ 419 (451)
T 1pw4_A 342 PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAP--KKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVM 419 (451)
T ss_dssp CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSC--TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhc--hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 43333334555666677777777767788888874 45699999999999999 9999999999999999999999998
Q ss_pred hhHHHHHHHHHhhc
Q 037870 228 AIPPVLLIVLGFVI 241 (511)
Q Consensus 228 ~~~~~i~~~~~~~~ 241 (511)
+++.++..+..++.
T Consensus 420 ~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 420 IGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88777754444443
No 9
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.14 E-value=5.5e-10 Score=112.35 Aligned_cols=123 Identities=11% Similarity=-0.032 Sum_probs=99.8
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhcc-CCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHH
Q 037870 308 PAFSQEFVGLIYALGAVASMIGVLIYHKTLKD-YPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVS 386 (511)
Q Consensus 308 ~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (511)
+|++..+.|++.+...++..++.++.|++.|| +|+|+.+..+.++..+..+.. .. .++.+..+...++.
T Consensus 49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~---~~-------~~~~~~~~~~~~l~ 118 (491)
T 4aps_A 49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVL---AL-------PFGASALFGSIILI 118 (491)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH---HS-------CCSTTHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHH---HH-------hhhHHHHHHHHHHH
Confidence 68999999999999999999999999999999 899999998876665533221 11 12333444455566
Q ss_pred HHHHHhhHhHHHHHHhhcCCCcc--hHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 037870 387 HIISKIRWIPMIVLSTRLCPIGI--EGTFFALLMCIDSIGSLTSKWGGGIVLHLLH 440 (511)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~p~~~--~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g 440 (511)
+++.+...+....++.|..|+++ |++.+++.+...++|..++|.+++.+.+..|
T Consensus 119 g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g 174 (491)
T 4aps_A 119 IIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAG 174 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 77777788888899999999988 8888999999999999999999999998755
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.14 E-value=4.9e-10 Score=110.87 Aligned_cols=149 Identities=13% Similarity=0.007 Sum_probs=112.7
Q ss_pred chhhhhhhh-hhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhcCChhH
Q 037870 76 FSKVVTDYY-WKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGKLPI 153 (511)
Q Consensus 76 ~~~~~~~~~-~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~~~~~ 153 (511)
....++|.| +++.+|.+..+.+++.+...+...+ .++.|+++||+ +||+.+..+.++..++.+++.+.++...
T Consensus 276 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (438)
T 3o7q_A 276 ACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-----APHKVLAAYALIAMALCLISAFAGGHVG 350 (438)
T ss_dssp HHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-----CHHHHHHHHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHcCCcHH
Confidence 345577888 8887799999999999998888777 88999999996 6777888888888888888777775432
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCC-hhhHHHHhhhHHH
Q 037870 154 AIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLG-PQGALGVLAIPPV 232 (511)
Q Consensus 154 ~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~g-w~~~f~~~~~~~~ 232 (511)
+...++.+++.+...+...++..+..+++ ++...++.. ...+|..++|.+.|++.+..| ++..|++.++..+
T Consensus 351 ---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~ 423 (438)
T 3o7q_A 351 ---LIALTLCSAFMSIQYPTIFSLGIKNLGQD---TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFA 423 (438)
T ss_dssp ---HHHHHHHHHHHTTHHHHHHHHHHSSCGGG---HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHhhcccc---ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 23335566776666777777777766432 566666655 566999999999999999998 9999987655544
Q ss_pred HHHH
Q 037870 233 LLIV 236 (511)
Q Consensus 233 i~~~ 236 (511)
+..+
T Consensus 424 ~~~~ 427 (438)
T 3o7q_A 424 VIFI 427 (438)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 11
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.07 E-value=5.7e-10 Score=109.70 Aligned_cols=159 Identities=11% Similarity=0.016 Sum_probs=108.6
Q ss_pred hhhhhhhhcccC---CChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhcCChhHH
Q 037870 79 VVTDYYWKDVQK---VQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGKLPIA 154 (511)
Q Consensus 79 ~~~~~~~~~~~g---~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~~~~~~ 154 (511)
.++|.++++.++ .+..+.++..++..+...+ .++.|+++||+ +||+.+..+.++.++..+..++.++...
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-----g~~~~l~~~~~~~~~~~~~~~~~~~~~~- 314 (417)
T 2cfq_A 241 QQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-----GGKNALLLAGTIMSVRIIGSSFATSALE- 314 (417)
T ss_dssp HHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----CHHHHHHHHHHHHHHHHHHHTTCCSHHH-
T ss_pred HHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cHHHHHHHHHHHHHHHHHHHHHhccHHH-
Confidence 346666665444 2345567776666666555 78899999996 5777777777777777767766665332
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHH-HHHHHHHHHHHHHHHHHHhhccCChhhHHHHhhhHHHH
Q 037870 155 IALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSL-CGFCSAAGSLIGYAVSGFSVNHLGPQGALGVLAIPPVL 233 (511)
Q Consensus 155 ~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~G~~lg~~~~g~l~~~~gw~~~f~~~~~~~~i 233 (511)
+++..++.+++.+...+....++.|..+ ++.|++.++. ++....+|..+||.++|++.++.|++..|.+.+++.++
T Consensus 315 -~~~~~~l~~~~~~~~~~~~~~~~~~~~p--~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~ 391 (417)
T 2cfq_A 315 -VVILKTLHMFEVPFLLVGCFKYITSQFE--VRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALG 391 (417)
T ss_dssp -HHHHTTHHHHHHHHHHHHHHHHHHHHSC--HHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHH
Confidence 3333444555555444555667777764 3558888887 47788899999999999999988999999988877776
Q ss_pred HHH-HHhhcccccc
Q 037870 234 LIV-LGFVIYETRS 246 (511)
Q Consensus 234 ~~~-~~~~~~e~~~ 246 (511)
..+ .++..||+++
T Consensus 392 ~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 392 FTLISVFTLSGPGP 405 (417)
T ss_dssp HHHHHTTSSCCSCT
T ss_pred HHHHHHhhhcCCCc
Confidence 444 3444565443
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.04 E-value=2.6e-09 Score=108.34 Aligned_cols=142 Identities=9% Similarity=-0.047 Sum_probs=103.4
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHhccC-CChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHHH
Q 037870 310 FSQEFVGLIYALGAVASMIGVLIYHKTLKDY-PLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHI 388 (511)
Q Consensus 310 ~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (511)
++..+.|++.....++..++.++.|++.||+ |+|+.+..+.++..+..+.... . ..+.+..+...++.++
T Consensus 51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~-~--------~~~~~~~~~~~~l~g~ 121 (524)
T 2xut_A 51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAI-F--------EHSVQGFYTGLFLIAL 121 (524)
T ss_dssp TTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHH-T--------SSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH-h--------cccHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999 9999988876666543322111 0 1133334444556677
Q ss_pred HHHhhHhHHHHHHhhcCCCcchHHHHHH---HHHHHHHHHhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHH
Q 037870 389 ISKIRWIPMIVLSTRLCPIGIEGTFFAL---LMCIDSIGSLTSKWGGGIVLHLLHVTRTDFTNLWLVILIRNVLRLATLG 465 (511)
Q Consensus 389 ~~~~~~~~~~~~~~~~~p~~~~g~~~gl---~~~~~~lg~~~g~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (511)
+.+...++..+++.|.+|+++|++..+. .+...++|..++|.+++.+.+..| +...+.+..++.+++.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g--------~~~~f~~~~~~~~~~~~ 193 (524)
T 2xut_A 122 GSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFG--------AAVAFGIPGVLMFVATV 193 (524)
T ss_dssp HHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSC--------HHHHHHHHHHHHHHHHH
T ss_pred hccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--------HHHHHHHHHHHHHHHHH
Confidence 7788888888999999999999765555 889999999999999999887543 23344444444444444
Q ss_pred HHh
Q 037870 466 LIF 468 (511)
Q Consensus 466 ~~~ 468 (511)
...
T Consensus 194 ~~~ 196 (524)
T 2xut_A 194 FFW 196 (524)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.01 E-value=9.6e-10 Score=106.38 Aligned_cols=123 Identities=10% Similarity=0.050 Sum_probs=99.6
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHH
Q 037870 308 PAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSH 387 (511)
Q Consensus 308 ~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (511)
+|.++.+.|++.....++..++.+..|++.||+|+|+.+..+..+..+..+..... ++.+..+...++.+
T Consensus 30 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~----------~~~~~l~~~~~l~g 99 (375)
T 2gfp_A 30 LNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT----------SSLTVLIAASAMQG 99 (375)
T ss_dssp SSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh----------ccHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999998876666543332211 12233344455667
Q ss_pred HHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 037870 388 IISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLH 440 (511)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g 440 (511)
+..+...+....++.|..|+++|++.+++.+...++|..+++.+++++.+..+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 152 (375)
T 2gfp_A 100 MGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWN 152 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHH
T ss_pred HHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcc
Confidence 77777777888899999999999999999999999999999999999876554
No 14
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.95 E-value=9.1e-10 Score=110.70 Aligned_cols=163 Identities=15% Similarity=0.097 Sum_probs=112.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhccc-----c---cCCCchhhhhHH
Q 037870 311 SQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNL-----A---LGIPDSFFVITE 382 (511)
Q Consensus 311 s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-----~---~~~~~~~~~~~~ 382 (511)
+..+.|++.+...+|.++|.++.|++.||+|||+.+.++.++..++.+........... . ...++....++.
T Consensus 53 ~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~ 132 (491)
T 4gc0_A 53 ANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIY 132 (491)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHH
Confidence 45567778788899999999999999999999999999877776654433211100000 0 001233345566
Q ss_pred HHHHHHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHH
Q 037870 383 QCVSHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLHVTRTDFTNLWLVILIRNVLRLA 462 (511)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 462 (511)
-++.+++.+...+....+++|.+|+++||...++.+....+|..++..++..+....+........+...+.+..+..++
T Consensus 133 R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (491)
T 4gc0_A 133 RIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALL 212 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhh
Confidence 67888888888888889999999999999999999999999988888887777655443322222333344444444555
Q ss_pred HHHHHhhcCCC
Q 037870 463 TLGLIFLVPKA 473 (511)
Q Consensus 463 ~~~~~~~~~~~ 473 (511)
.++..+++||.
T Consensus 213 ~~~~~~~~peS 223 (491)
T 4gc0_A 213 FLMLLYTVPES 223 (491)
T ss_dssp HHHHGGGSCCC
T ss_pred hhhhhhcCCCC
Confidence 55555567765
No 15
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens}
Probab=34.10 E-value=62 Score=28.52 Aligned_cols=13 Identities=23% Similarity=0.038 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHhh
Q 037870 457 NVLRLATLGLIFL 469 (511)
Q Consensus 457 ~~~~~~~~~~~~~ 469 (511)
.+.++++.+++.+
T Consensus 212 ~~Ga~la~~~y~~ 224 (266)
T 3d9s_A 212 IVGAVLAAILYFY 224 (266)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444443
No 16
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=33.08 E-value=56 Score=22.10 Aligned_cols=34 Identities=12% Similarity=0.017 Sum_probs=18.8
Q ss_pred ccCChhhHHHHhhhHHHH-HHHHHhhccccccccc
Q 037870 216 NHLGPQGALGVLAIPPVL-LIVLGFVIYETRSANI 249 (511)
Q Consensus 216 ~~~gw~~~f~~~~~~~~i-~~~~~~~~~e~~~~~~ 249 (511)
..-||-.++.+...+.++ ...+-..+||+.++.+
T Consensus 28 kGAg~AAv~f~~~~~~lv~l~~iG~~LPE~Sr~aP 62 (77)
T 2dw3_A 28 KGAGWAGGVFFGTLLLIGFFRVVGRMLPIQENQAP 62 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCTTTTCSSCS
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHhCchhcccCC
Confidence 334566665554444443 3345567898766554
No 17
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A*
Probab=23.64 E-value=62 Score=28.47 Aligned_cols=22 Identities=9% Similarity=-0.105 Sum_probs=9.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhc
Q 037870 449 LWLVILIRNVLRLATLGLIFLV 470 (511)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~ 470 (511)
.|...+.-.+.++++.+++..+
T Consensus 201 ~Wvy~vgP~~Ga~la~~~y~~l 222 (263)
T 2b6o_A 201 HWVYWVGPVIGAGLGSLLYDFL 222 (263)
T ss_dssp CTHHHHHHHHHHHHHHHHHHTT
T ss_pred eeHHHHHHHHHHHHHHHHHHHH
Confidence 3433333333444555544433
No 18
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=23.11 E-value=2.7e+02 Score=27.04 Aligned_cols=22 Identities=9% Similarity=0.185 Sum_probs=9.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHh
Q 037870 418 MCIDSIGSLTSKWGGGIVLHLL 439 (511)
Q Consensus 418 ~~~~~lg~~~g~~l~g~l~~~~ 439 (511)
+....+|..++|..+-.+.|++
T Consensus 361 ~FL~~lg~~l~P~~gI~l~Dy~ 382 (501)
T 2jln_A 361 TFLNLLASALGPLAGIMISDYF 382 (501)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444443
No 19
>2nrg_A Intrinsic membrane protein PUFX; BENT transmembrane helix, photosynthesis,membrane protein; NMR {Rhodobacter sphaeroides}
Probab=22.67 E-value=1.1e+02 Score=20.98 Aligned_cols=36 Identities=11% Similarity=0.018 Sum_probs=20.4
Q ss_pred hhccCChhhHHHHhhhHHHH-HHHHHhhccccccccc
Q 037870 214 SVNHLGPQGALGVLAIPPVL-LIVLGFVIYETRSANI 249 (511)
Q Consensus 214 l~~~~gw~~~f~~~~~~~~i-~~~~~~~~~e~~~~~~ 249 (511)
+...-||-.++.+...+.++ ...+-..+||+.++.+
T Consensus 27 MlKGAG~AAv~fl~~~~~lv~l~~iG~~LPE~Sr~aP 63 (82)
T 2nrg_A 27 MMKGAGWAGGVFFGTLLLIGFFRVVGRMLPIQENQAP 63 (82)
T ss_dssp HTHHHHTHHHHHHHHHHHHHHHHHHHHSSTTTTTCCS
T ss_pred HHhcccHHHHHHHHHHHHHHHHHHHHHhCchhcccCC
Confidence 33344666666655444444 3345567898766554
Done!