Your job contains 1 sequence.
>037872
MVNRSYVPRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDN
WRFLDTLPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITS
DLNFTLSDLLKTSFRANFDHSKKNKK
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 037872
(146 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2148453 - symbol:DPD1 "defective in pollen org... 343 3.3e-31 1
ZFIN|ZDB-GENE-110411-9 - symbol:si:ch1073-296i8.2 "si:ch1... 128 3.7e-08 1
TIGR_CMR|CJE_0502 - symbol:CJE_0502 "exonuclease, DNA pol... 109 5.3e-06 1
TIGR_CMR|BA_3672 - symbol:BA_3672 "DNA polymerase III, ep... 108 1.3e-05 1
UNIPROTKB|Q74DD3 - symbol:GSU1383 "3'-to-5' exonuclease, ... 104 4.2e-05 1
TIGR_CMR|GSU_1383 - symbol:GSU_1383 "exonuclease" species... 104 4.2e-05 1
UNIPROTKB|Q10384 - symbol:MT2247 "Uncharacterized protein... 105 0.00025 1
POMBASE|SPBC30B4.08 - symbol:eri1 "double-strand siRNA ri... 100 0.00099 1
>TAIR|locus:2148453 [details] [associations]
symbol:DPD1 "defective in pollen organelle DNA
degradation1" species:3702 "Arabidopsis thaliana" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004527 "exonuclease
activity" evidence=IEA;ISS;IDA] [GO:0005622 "intracellular"
evidence=IEA;ISS] [GO:0000738 "DNA catabolic process,
exonucleolytic" evidence=IMP] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0009536 "plastid" evidence=IDA]
InterPro:IPR006055 InterPro:IPR012337 SMART:SM00479 Pfam:PF00929
GO:GO:0005739 EMBL:CP002688 GO:GO:0009536 GO:GO:0003676
GO:GO:0004527 InterPro:IPR013520 SUPFAM:SSF53098 GO:GO:0000738
EMBL:BT025876 EMBL:AK175271 IPI:IPI00523862 RefSeq:NP_198046.1
RefSeq:NP_851082.1 RefSeq:NP_851083.1 RefSeq:NP_974842.1
UniGene:At.20000 ProteinModelPortal:Q682U6 SMR:Q682U6 PRIDE:Q682U6
EnsemblPlants:AT5G26940.1 EnsemblPlants:AT5G26940.2
EnsemblPlants:AT5G26940.3 EnsemblPlants:AT5G26940.4 GeneID:832752
KEGG:ath:AT5G26940 InParanoid:Q682U6 OMA:VPRMEEL
ProtClustDB:CLSN2686956 Genevestigator:Q682U6 Uniprot:Q682U6
Length = 316
Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
Identities = 75/150 (50%), Positives = 97/150 (64%)
Query: 1 MVNRSYVPRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDN 60
MV R VPRME+LIPI ++YV SR PG + VAHN + FD FL EF+RCS IP N
Sbjct: 167 MVCRPEVPRMEELIPIFLRYVESRQKPGGYVMLVAHNGKSFDFQFLINEFNRCSYEIPHN 226
Query: 61 WRFLDTLPLARELMKQ-NGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERIT 119
W LD+LPLARE MK +V +SL+AL +Y+ + EG AHRA+SDV L+ + +++T
Sbjct: 227 WLLLDSLPLARENMKSVEPTVKLSSSLEALADYYSLTREGDAHRALSDVLLLSKVFQKLT 286
Query: 120 SDLNFTLSDLLKTSFRANFDHSK---KNKK 146
DL +LSDL+ A+ D S KNKK
Sbjct: 287 IDLKLSLSDLVLRCHTAS-DISAAMAKNKK 315
>ZFIN|ZDB-GENE-110411-9 [details] [associations]
symbol:si:ch1073-296i8.2 "si:ch1073-296i8.2"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR012337 Pfam:PF00929
ZFIN:ZDB-GENE-110411-9 GO:GO:0003676 InterPro:IPR013520
SUPFAM:SSF53098 EMBL:CU651670 IPI:IPI00997361 RefSeq:XP_002666829.1
RefSeq:XP_003201423.1 Ensembl:ENSDART00000137950
Ensembl:ENSDART00000149117 GeneID:100005742 KEGG:dre:100005742
GeneTree:ENSGT00460000041710 NextBio:20786818 Uniprot:F1R5B7
Length = 235
Score = 128 (50.1 bits), Expect = 3.7e-08, P = 3.7e-08
Identities = 34/95 (35%), Positives = 51/95 (53%)
Query: 32 IFVAHNARRFDVPFLAK---EFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQA 88
+ + HN RRFD P LA+ EFS S + F+DTLPLAR+L+K +G S K
Sbjct: 97 LLLGHNIRRFDCPVLARALDEFSLRSHFQREVSGFVDTLPLARQLLKDHGLQSFKQE-SL 155
Query: 89 LREYFGIPLEGSAHRAMSDVNSLASILERITSDLN 123
++ G+ +AH A+ DV +L + ++ N
Sbjct: 156 VKNLLGVSY--AAHNALEDVQALQKLYWKLKPSAN 188
>TIGR_CMR|CJE_0502 [details] [associations]
symbol:CJE_0502 "exonuclease, DNA polymerase III, epsilon
subunit family" species:195099 "Campylobacter jejuni RM1221"
[GO:0004527 "exonuclease activity" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0009360 "DNA polymerase III complex"
evidence=ISS] InterPro:IPR006054 InterPro:IPR006055
InterPro:IPR012337 SMART:SM00479 Pfam:PF00929 GO:GO:0003677
GO:GO:0006260 GO:GO:0005622 EMBL:CP000025 GenomeReviews:CP000025_GR
GO:GO:0004527 eggNOG:COG0847 InterPro:IPR013520 SUPFAM:SSF53098
GO:GO:0003887 KO:K02342 TIGRFAMs:TIGR00573 HOGENOM:HOG000258615
RefSeq:YP_178520.1 ProteinModelPortal:Q5HW15 STRING:Q5HW15
GeneID:3231263 KEGG:cjr:CJE0502 PATRIC:20042716 OMA:ARLKHQD
ProtClustDB:PRK08517 BioCyc:CJEJ195099:GJC0-512-MONOMER
Uniprot:Q5HW15
Length = 233
Score = 109 (43.4 bits), Expect = 5.3e-06, P = 5.3e-06
Identities = 36/116 (31%), Positives = 56/116 (48%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
+IFVAHN R FD F++K + C I N R T+ A+ ++ S K L+ L+
Sbjct: 126 SIFVAHNVR-FDYSFISKALNECGFGILLNRRIC-TIEFAQCCIE-----SPKYKLEVLK 178
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILERITSDLNF---TLSDLLKTSFRANFDHSKK 143
E+ G+ E + HRA+ D + A I + L + T +L+ +F H K
Sbjct: 179 EFLGV--ENTHHRALDDALAAAEIFKYCLGKLPYHIKTTEELI--NFTKTATHKAK 230
>TIGR_CMR|BA_3672 [details] [associations]
symbol:BA_3672 "DNA polymerase III, epsilon subunit,
putative" species:198094 "Bacillus anthracis str. Ames" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR006054 InterPro:IPR006055
InterPro:IPR012337 SMART:SM00479 Pfam:PF00929 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0006260 GO:GO:0005622 GO:GO:0004527 InterPro:IPR013520
SUPFAM:SSF53098 GO:GO:0003887 KO:K02342 TIGRFAMs:TIGR00573
HSSP:P03007 RefSeq:NP_845935.1 RefSeq:YP_020306.1
RefSeq:YP_029660.1 ProteinModelPortal:Q81Y85 DNASU:1089228
EnsemblBacteria:EBBACT00000011122 EnsemblBacteria:EBBACT00000018521
EnsemblBacteria:EBBACT00000024461 GeneID:1089228 GeneID:2815455
GeneID:2848298 KEGG:ban:BA_3672 KEGG:bar:GBAA_3672 KEGG:bat:BAS3404
HOGENOM:HOG000095225 OMA:KKYVLTE ProtClustDB:PRK06807
BioCyc:BANT260799:GJAJ-3466-MONOMER
BioCyc:BANT261594:GJ7F-3577-MONOMER Uniprot:Q81Y85
Length = 315
Score = 108 (43.1 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 32/116 (27%), Positives = 60/116 (51%)
Query: 5 SYVPRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFL 64
S P +E+++P+ + ++++ + VAHNA FD+ FL + + P N + +
Sbjct: 70 SDAPTIEEVLPLFLAFLHTN-------VIVAHNAS-FDMRFLKSNVNMLGLPEPKN-KVI 120
Query: 65 DTLPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITS 120
DT+ LA++ MK + L+ L+ GI L S+H A D + A++ ++ S
Sbjct: 121 DTVFLAKKYMKH----APNHKLETLKRMLGIRL--SSHNAFDDCITCAAVYQKCAS 170
>UNIPROTKB|Q74DD3 [details] [associations]
symbol:GSU1383 "3'-to-5' exonuclease, putative"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR006054
InterPro:IPR006055 InterPro:IPR012337 SMART:SM00479 Pfam:PF00929
GO:GO:0003677 GO:GO:0006260 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0004527 InterPro:IPR013520
SUPFAM:SSF53098 GO:GO:0003887 KO:K02342 TIGRFAMs:TIGR00573
HOGENOM:HOG000258615 RefSeq:NP_952436.1 ProteinModelPortal:Q74DD3
GeneID:2687906 KEGG:gsu:GSU1383 PATRIC:22025541 OMA:LINVNAP
ProtClustDB:CLSK763133 BioCyc:GSUL243231:GH27-1334-MONOMER
Uniprot:Q74DD3
Length = 181
Score = 104 (41.7 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 33/85 (38%), Positives = 44/85 (51%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
A+ VAHNAR FD+ FL EF R +++ N R TL LAR + + +T Q L
Sbjct: 87 ALLVAHNAR-FDLAFLRHEFGRLGLSL--NSRSACTLELARRRLPELTDHRLETVYQHL- 142
Query: 91 EYFGIPLEGS-AHRAMSDVNSLASI 114
FG EG+ HRA+ D A +
Sbjct: 143 --FGAVPEGTRCHRALDDARLTARV 165
>TIGR_CMR|GSU_1383 [details] [associations]
symbol:GSU_1383 "exonuclease" species:243231 "Geobacter
sulfurreducens PCA" [GO:0008150 "biological_process" evidence=ND]
[GO:0016797 "exonuclease activity, active with either ribo- or
deoxyribonucleic acids and producing 3'-phosphomonoesters"
evidence=ISS] InterPro:IPR006054 InterPro:IPR006055
InterPro:IPR012337 SMART:SM00479 Pfam:PF00929 GO:GO:0003677
GO:GO:0006260 GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0004527 InterPro:IPR013520 SUPFAM:SSF53098 GO:GO:0003887
KO:K02342 TIGRFAMs:TIGR00573 HOGENOM:HOG000258615
RefSeq:NP_952436.1 ProteinModelPortal:Q74DD3 GeneID:2687906
KEGG:gsu:GSU1383 PATRIC:22025541 OMA:LINVNAP ProtClustDB:CLSK763133
BioCyc:GSUL243231:GH27-1334-MONOMER Uniprot:Q74DD3
Length = 181
Score = 104 (41.7 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 33/85 (38%), Positives = 44/85 (51%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
A+ VAHNAR FD+ FL EF R +++ N R TL LAR + + +T Q L
Sbjct: 87 ALLVAHNAR-FDLAFLRHEFGRLGLSL--NSRSACTLELARRRLPELTDHRLETVYQHL- 142
Query: 91 EYFGIPLEGS-AHRAMSDVNSLASI 114
FG EG+ HRA+ D A +
Sbjct: 143 --FGAVPEGTRCHRALDDARLTARV 165
>UNIPROTKB|Q10384 [details] [associations]
symbol:MT2247 "Uncharacterized protein Rv2191/MT2247"
species:1773 "Mycobacterium tuberculosis" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] InterPro:IPR006054
InterPro:IPR006055 InterPro:IPR012337 SMART:SM00479
InterPro:IPR000305 Pfam:PF00929 Pfam:PF01541 GO:GO:0005829
GO:GO:0005886 GO:GO:0005618 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0003677 GO:GO:0006260 EMBL:BX842579
GO:GO:0004527 InterPro:IPR013520 SUPFAM:SSF53098 eggNOG:COG0322
SMART:SM00465 SUPFAM:SSF82771 PROSITE:PS50164 GO:GO:0003887
KO:K02342 TIGRFAMs:TIGR00573 PIR:H70783 RefSeq:NP_216707.1
RefSeq:NP_336719.1 RefSeq:YP_006515611.1 ProteinModelPortal:Q10384
SMR:Q10384 EnsemblBacteria:EBMYCT00000000128
EnsemblBacteria:EBMYCT00000072423 GeneID:13318880 GeneID:887265
GeneID:924179 KEGG:mtc:MT2247 KEGG:mtu:Rv2191 KEGG:mtv:RVBD_2191
PATRIC:18126696 TubercuList:Rv2191 HOGENOM:HOG000021021 OMA:PYNRRSR
ProtClustDB:PRK07883 Uniprot:Q10384
Length = 645
Score = 105 (42.0 bits), Expect = 0.00025, P = 0.00025
Identities = 38/143 (26%), Positives = 73/143 (51%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
P ++ ++P+ ++ G+ ++ VAHNA FD+ FL RC + P + L T+
Sbjct: 112 PTIDAVLPMFFEFA------GD-SVLVAHNAG-FDIGFLRAAARRCDITWPQP-QVLCTM 162
Query: 68 PLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSD----VNSLASILERITSDLN 123
LAR ++ ++ + S + L AL F + HRA+ D V+ L +++ER+ +
Sbjct: 163 RLARRVLSRDEAPSVR--LAALARLFAVA-SNPTHRALDDARATVDVLHALIERVGNQGV 219
Query: 124 FTLSDLLKTSFRANFDHSKKNKK 146
T ++L S+ N +++ K+
Sbjct: 220 HTYAEL--RSYLPNVTQAQRCKR 240
>POMBASE|SPBC30B4.08 [details] [associations]
symbol:eri1 "double-strand siRNA ribonuclease Eri1"
species:4896 "Schizosaccharomyces pombe" [GO:0000175
"3'-5'-exoribonuclease activity" evidence=IMP] [GO:0000467
"exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA
from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0032296 "double-stranded RNA-specific ribonuclease activity"
evidence=IDA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0060906 "negative regulation of chromatin silencing by small
RNA" evidence=IMP] InterPro:IPR003034 InterPro:IPR006055
InterPro:IPR012337 PROSITE:PS50800 SMART:SM00479 Pfam:PF00929
PomBase:SPBC30B4.08 GO:GO:0005829 GO:GO:0046872 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0003723 InterPro:IPR013520
SUPFAM:SSF53098 GO:GO:0031047 GO:GO:0000175 eggNOG:COG5018
EMBL:AB004539 GO:GO:0000467 RefSeq:XP_001713129.1
ProteinModelPortal:Q08I43 EnsemblFungi:SPBC30B4.08.1 GeneID:2540347
KEGG:spo:SPBC30B4.08 OMA:HETIELP OrthoDB:EOG45MRFR NextBio:20801475
GO:GO:0032296 GO:GO:0060906 Uniprot:Q08I43
Length = 313
Score = 100 (40.3 bits), Expect = 0.00099, P = 0.00099
Identities = 24/80 (30%), Positives = 45/80 (56%)
Query: 45 FLAKEFSRCSMNIPDNW---RFLDTLPLARELMKQNGSVSSKTSLQALREYFGIPLEGSA 101
FLAK+F M IPD W F+D +++ + +T++ + E++G+ EGS
Sbjct: 210 FLAKQFKYDKMPIPD-WIKGPFVDIRSFYKDVYRV-----PRTNINGMLEHWGLQFEGSE 263
Query: 102 HRAMSDVNSLASILERITSD 121
HR + D +L+ I++++ S+
Sbjct: 264 HRGIDDARNLSRIVKKMCSE 283
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.135 0.385 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 146 146 0.00079 103 3 11 22 0.42 31
30 0.49 33
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 8
No. of states in DFA: 580 (62 KB)
Total size of DFA: 127 KB (2081 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 14.70u 0.16s 14.86t Elapsed: 00:00:01
Total cpu time: 14.70u 0.16s 14.86t Elapsed: 00:00:01
Start: Fri May 10 04:12:30 2013 End: Fri May 10 04:12:31 2013