BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037872
(146 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|356572944|ref|XP_003554625.1| PREDICTED: DNA polymerase III polC-type-like [Glycine max]
Length = 329
Score = 181 bits (458), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 91/146 (62%), Positives = 109/146 (74%)
Query: 1 MVNRSYVPRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDN 60
MVN+ VPRMEDLIPI+++YV SR PG IFVAHNAR FDVPF+ E R S+ IP N
Sbjct: 182 MVNKPGVPRMEDLIPILLQYVRSREKPGGDVIFVAHNARCFDVPFIINELRRYSVEIPPN 241
Query: 61 WRFLDTLPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITS 120
W FLDTLPLAREL+K G+ S TSL ALR+ +GI ++GSAHRAM DVN+L+ IL R+TS
Sbjct: 242 WLFLDTLPLARELIKSGGTTLSSTSLAALRDLYGIKVDGSAHRAMVDVNALSLILSRLTS 301
Query: 121 DLNFTLSDLLKTSFRANFDHSKKNKK 146
DL TLSDL+K SF + + KNKK
Sbjct: 302 DLKLTLSDLVKKSFTESDIINSKNKK 327
>gi|147814790|emb|CAN74413.1| hypothetical protein VITISV_042394 [Vitis vinifera]
Length = 340
Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 83/147 (56%), Positives = 107/147 (72%), Gaps = 1/147 (0%)
Query: 1 MVNRSYVPRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDN 60
MVNR VPR +DLIPI+++YV SR PG + ++VAHN R FDVPFL EFSRC+ +P N
Sbjct: 191 MVNRPDVPRWKDLIPILLQYVESRQKPGGLILWVAHNGRSFDVPFLINEFSRCNTEVPPN 250
Query: 61 WRFLDTLPLARELMKQNGS-VSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERIT 119
WRF+DTLPLARE +K GS + S SLQALREYF IPL G AHR +SDV +L+ IL+ +T
Sbjct: 251 WRFMDTLPLAREFIKSAGSDLPSGASLQALREYFRIPLVGPAHRVLSDVYTLSQILQMLT 310
Query: 120 SDLNFTLSDLLKTSFRANFDHSKKNKK 146
+L ++++LL SF A+ + K KK
Sbjct: 311 FNLKVSVANLLDRSFTASDIINPKKKK 337
>gi|225450649|ref|XP_002282861.1| PREDICTED: DNA polymerase III polC-type-like isoform 2 [Vitis
vinifera]
gi|225450651|ref|XP_002282855.1| PREDICTED: DNA polymerase III polC-type-like isoform 1 [Vitis
vinifera]
Length = 337
Score = 165 bits (418), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 82/147 (55%), Positives = 107/147 (72%), Gaps = 1/147 (0%)
Query: 1 MVNRSYVPRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDN 60
MVNR VPR +DLIPI+++YV SR PG + ++VAHN R FDVPFL EFSRC+ +P N
Sbjct: 188 MVNRPDVPRWKDLIPILLQYVESRQKPGGLILWVAHNGRSFDVPFLINEFSRCNTEVPPN 247
Query: 61 WRFLDTLPLARELMKQNGS-VSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERIT 119
WRFLDTLPLAREL+K GS + SLQALREY+ IPL G AHR +SDV +L+ +L+ +T
Sbjct: 248 WRFLDTLPLARELIKSAGSDLPPGASLQALREYYRIPLVGPAHRVLSDVYTLSQVLQMLT 307
Query: 120 SDLNFTLSDLLKTSFRANFDHSKKNKK 146
+L ++++LL SF A+ + K KK
Sbjct: 308 FNLKVSVANLLDRSFTASDIINPKKKK 334
>gi|296089746|emb|CBI39565.3| unnamed protein product [Vitis vinifera]
Length = 332
Score = 165 bits (418), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 82/147 (55%), Positives = 107/147 (72%), Gaps = 1/147 (0%)
Query: 1 MVNRSYVPRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDN 60
MVNR VPR +DLIPI+++YV SR PG + ++VAHN R FDVPFL EFSRC+ +P N
Sbjct: 183 MVNRPDVPRWKDLIPILLQYVESRQKPGGLILWVAHNGRSFDVPFLINEFSRCNTEVPPN 242
Query: 61 WRFLDTLPLARELMKQNGS-VSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERIT 119
WRFLDTLPLAREL+K GS + SLQALREY+ IPL G AHR +SDV +L+ +L+ +T
Sbjct: 243 WRFLDTLPLARELIKSAGSDLPPGASLQALREYYRIPLVGPAHRVLSDVYTLSQVLQMLT 302
Query: 120 SDLNFTLSDLLKTSFRANFDHSKKNKK 146
+L ++++LL SF A+ + K KK
Sbjct: 303 FNLKVSVANLLDRSFTASDIINPKKKK 329
>gi|356505791|ref|XP_003521673.1| PREDICTED: DNA polymerase III polC-type-like [Glycine max]
Length = 329
Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 85/134 (63%), Positives = 101/134 (75%)
Query: 1 MVNRSYVPRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDN 60
MVN+ VPRMEDLIPI+ +YV SR PG +FVAHNAR FDVPF+ E R S+ IP N
Sbjct: 182 MVNKPDVPRMEDLIPILFQYVRSREKPGGDVLFVAHNARCFDVPFIISELRRYSIKIPPN 241
Query: 61 WRFLDTLPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITS 120
W FLDTLPLARELMK G+ S +SL ALR+ +GI ++GSAHRAM DVN+L+ IL R+TS
Sbjct: 242 WLFLDTLPLARELMKSGGTTLSSSSLAALRDLYGIKVDGSAHRAMVDVNTLSLILSRLTS 301
Query: 121 DLNFTLSDLLKTSF 134
DL TLSDL+ SF
Sbjct: 302 DLKLTLSDLVDKSF 315
>gi|357511765|ref|XP_003626171.1| DNA polymerase III polC-type [Medicago truncatula]
gi|355501186|gb|AES82389.1| DNA polymerase III polC-type [Medicago truncatula]
Length = 332
Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 79/146 (54%), Positives = 102/146 (69%), Gaps = 1/146 (0%)
Query: 1 MVNRSYVPRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDN 60
MV+R VPRMEDL+PI+ YV SR P ++V HNAR FDVPF+ EF RCS IP N
Sbjct: 184 MVSRPGVPRMEDLVPILFHYVKSREKPRGYVLWVGHNARVFDVPFIINEFRRCSTQIPPN 243
Query: 61 WRFLDTLPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITS 120
W F+DTLPLAR+LMK G+ SL +LR+++ I ++G AHRAM DVN+L+ IL ++T
Sbjct: 244 WLFVDTLPLARQLMKSEGTKLPSVSLDSLRKFYEIKVDGPAHRAMEDVNTLSLILPKLTC 303
Query: 121 DLNFTLSDLLKTSF-RANFDHSKKNK 145
DL TLS L++ SF A+ +SKK K
Sbjct: 304 DLKLTLSGLVEKSFTEADIINSKKKK 329
>gi|449435615|ref|XP_004135590.1| PREDICTED: DNA polymerase III PolC-type-like [Cucumis sativus]
Length = 327
Score = 158 bits (400), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 76/134 (56%), Positives = 101/134 (75%)
Query: 1 MVNRSYVPRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDN 60
MV+ VPRM++LIPI++++V SR PG + VAHNAR FDVPFL EFSR S++IP N
Sbjct: 183 MVDSPSVPRMQELIPIILQFVKSRQKPGGYVLLVAHNARTFDVPFLLSEFSRYSVDIPLN 242
Query: 61 WRFLDTLPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITS 120
W F DT+ LAR+LMK + S +K +LQAL EY+GI L+G AHRA+SDV L+SIL+R+T
Sbjct: 243 WLFFDTMTLARQLMKLSDSKITKITLQALGEYYGIKLDGKAHRALSDVRLLSSILQRLTF 302
Query: 121 DLNFTLSDLLKTSF 134
DL +SDL++ +F
Sbjct: 303 DLKLDISDLVERAF 316
>gi|449517739|ref|XP_004165902.1| PREDICTED: DNA polymerase III PolC-type-like [Cucumis sativus]
Length = 334
Score = 156 bits (394), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 75/134 (55%), Positives = 100/134 (74%)
Query: 1 MVNRSYVPRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDN 60
MV+ VP M++LIPI++++V SR PG + VAHNAR FDVPFL EFSR S++IP N
Sbjct: 183 MVDSPSVPSMQELIPIILQFVKSRQKPGGYVLLVAHNARTFDVPFLLSEFSRYSVDIPLN 242
Query: 61 WRFLDTLPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITS 120
W F DT+ LAR+LMK + S +K +LQAL EY+GI L+G AHRA+SDV L+SIL+R+T
Sbjct: 243 WLFFDTMTLARQLMKLSDSKITKITLQALGEYYGIKLDGKAHRALSDVRLLSSILQRLTF 302
Query: 121 DLNFTLSDLLKTSF 134
DL +SDL++ +F
Sbjct: 303 DLKLDISDLVERAF 316
>gi|255542840|ref|XP_002512483.1| exonuclease, putative [Ricinus communis]
gi|223548444|gb|EEF49935.1| exonuclease, putative [Ricinus communis]
Length = 334
Score = 156 bits (394), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 79/146 (54%), Positives = 100/146 (68%), Gaps = 1/146 (0%)
Query: 1 MVNRSYVPRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDN 60
MV + +VPRMEDLIPI+++Y+ SR PG + VAHN R FDVPFL EF R +++P N
Sbjct: 189 MVCKPHVPRMEDLIPILLQYIRSRQKPGGYVLLVAHNGRSFDVPFLINEFKRSGVDVPCN 248
Query: 61 WRFLDTLPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITS 120
W F+DTLPLAR+ MK G + +SLQ LRE FGI LEGSAHRAMSDV LA + + +T
Sbjct: 249 WLFMDTLPLARKWMKSKG-LKISSSLQGLREAFGIKLEGSAHRAMSDVRLLAKLFQMLTF 307
Query: 121 DLNFTLSDLLKTSFRANFDHSKKNKK 146
+L TL L+ SF A+ + K KK
Sbjct: 308 NLKTTLPSLVAESFTASELINVKKKK 333
>gi|356533554|ref|XP_003535328.1| PREDICTED: DNA polymerase III polC-type-like [Glycine max]
Length = 332
Score = 153 bits (386), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 77/147 (52%), Positives = 100/147 (68%), Gaps = 1/147 (0%)
Query: 1 MVNRSYVPRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDN 60
MVN VPRMEDLIPI+++Y+ SR G +++AHN R FD PFL EF RC +P N
Sbjct: 183 MVNIPDVPRMEDLIPILLQYIKSREKQGGYVLWIAHNGRAFDAPFLIHEFFRCCAELPRN 242
Query: 61 WRFLDTLPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITS 120
FLDTLPL REL+K G S SL ALRE++ + ++GSAHRAM DVN+L+ IL +T
Sbjct: 243 SLFLDTLPLGRELIKSEGRNLSSASLVALREFYKVKVDGSAHRAMVDVNTLSQILPMLTY 302
Query: 121 DLNFTLSDLLKTSFR-ANFDHSKKNKK 146
DL TLSDL++ S ++ ++KK KK
Sbjct: 303 DLKLTLSDLIRKSLNISDLINAKKTKK 329
>gi|224123908|ref|XP_002330239.1| predicted protein [Populus trichocarpa]
gi|222871695|gb|EEF08826.1| predicted protein [Populus trichocarpa]
Length = 147
Score = 152 bits (383), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 78/147 (53%), Positives = 98/147 (66%), Gaps = 1/147 (0%)
Query: 1 MVNRSYVPRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDN 60
MV R VPRME+LIPI+++YV SR PG +FVAHNAR FDVPFL EF R IP N
Sbjct: 1 MVCRPDVPRMEELIPILLQYVKSRQKPGGYVMFVAHNARNFDVPFLVNEFGRHHFEIPQN 60
Query: 61 WRFLDTLPLARELMKQNG-SVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERIT 119
W F+DT PLARE++K G V+S TSL+AL + + I G AHRAM+DV +L+ +L+R+T
Sbjct: 61 WLFVDTRPLAREVLKMEGLKVTSGTSLEALCKKYNIQFVGKAHRAMADVTALSLVLQRLT 120
Query: 120 SDLNFTLSDLLKTSFRANFDHSKKNKK 146
DL LS L+ F + S K KK
Sbjct: 121 FDLKLPLSGLIAKHFTPSELTSAKKKK 147
>gi|212723090|ref|NP_001131224.1| uncharacterized protein LOC100192533 [Zea mays]
gi|194690922|gb|ACF79545.1| unknown [Zea mays]
Length = 315
Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 69/137 (50%), Positives = 98/137 (71%)
Query: 1 MVNRSYVPRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDN 60
M+ R VPR ++IPI+++YV SR G+ ++VAHN R FDVPFL EF RC + +P +
Sbjct: 170 MLCRPDVPRFGEIIPILLQYVWSRQMDGKPVLWVAHNGRSFDVPFLMFEFRRCKVEMPGD 229
Query: 61 WRFLDTLPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITS 120
W F+DTLP+A++L+ NGS S SL+ LRE + IPL GSAHRAM DV +L+ +L+++T
Sbjct: 230 WLFVDTLPIAKQLVDSNGSKLSSVSLKFLRERYKIPLTGSAHRAMQDVTTLSYVLQKLTF 289
Query: 121 DLNFTLSDLLKTSFRAN 137
+L T+ LL+ SFRA+
Sbjct: 290 ELKLTVPQLLEKSFRAS 306
>gi|195646046|gb|ACG42491.1| DNA polymerase III subunit epsilon [Zea mays]
Length = 315
Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 69/137 (50%), Positives = 98/137 (71%)
Query: 1 MVNRSYVPRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDN 60
M+ R VPR ++IPI+++YV SR G+ ++VAHN R FDVPFL EF RC + +P +
Sbjct: 170 MLCRPDVPRFGEIIPILLQYVWSRQMDGKPVLWVAHNGRSFDVPFLMFEFRRCKVEMPGD 229
Query: 61 WRFLDTLPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITS 120
W F+DTLP+A++L+ NGS S SL+ LRE + IPL GSAHRAM DV +L+ +L+++T
Sbjct: 230 WLFVDTLPIAKQLVDSNGSKLSSVSLKFLRERYKIPLTGSAHRAMQDVTTLSYVLQKLTF 289
Query: 121 DLNFTLSDLLKTSFRAN 137
+L T+ LL+ SFRA+
Sbjct: 290 ELKLTVPQLLEKSFRAS 306
>gi|223946833|gb|ACN27500.1| unknown [Zea mays]
gi|224030613|gb|ACN34382.1| unknown [Zea mays]
gi|414866403|tpg|DAA44960.1| TPA: DNA polymerase III subunit epsilon isoform 1 [Zea mays]
gi|414866404|tpg|DAA44961.1| TPA: DNA polymerase III subunit epsilon isoform 2 [Zea mays]
gi|414866405|tpg|DAA44962.1| TPA: DNA polymerase III subunit epsilon isoform 3 [Zea mays]
Length = 315
Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 69/137 (50%), Positives = 98/137 (71%)
Query: 1 MVNRSYVPRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDN 60
M+ R VPR ++IPI+++YV SR G+ ++VAHN R FDVPFL EF RC + +P +
Sbjct: 170 MLCRPDVPRFGEIIPILLQYVWSRQMDGKPVLWVAHNGRSFDVPFLMFEFRRCKVEMPGD 229
Query: 61 WRFLDTLPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITS 120
W F+DTLP+A++L+ NGS S SL+ LRE + IPL GSAHRAM DV +L+ +L+++T
Sbjct: 230 WLFVDTLPIAKQLVDSNGSKLSSVSLKFLRERYKIPLTGSAHRAMQDVTTLSYVLQKLTF 289
Query: 121 DLNFTLSDLLKTSFRAN 137
+L T+ LL+ SFRA+
Sbjct: 290 ELKLTVPQLLEKSFRAS 306
>gi|242041211|ref|XP_002468000.1| hypothetical protein SORBIDRAFT_01g037840 [Sorghum bicolor]
gi|241921854|gb|EER94998.1| hypothetical protein SORBIDRAFT_01g037840 [Sorghum bicolor]
Length = 583
Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 68/137 (49%), Positives = 97/137 (70%)
Query: 1 MVNRSYVPRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDN 60
M+ R VPR +L+PI+++YV SR G+ ++VAHN R FDVPFL EF RC + +P +
Sbjct: 438 MLCRPDVPRFGELVPILLQYVWSRQMDGKPVLWVAHNGRSFDVPFLIFEFRRCKLEMPGD 497
Query: 61 WRFLDTLPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITS 120
W F+DTLP+AR+L+ +GS S SL+ LRE + IPL GSAHRAM DV +L +L+++T
Sbjct: 498 WLFVDTLPIARQLVDSDGSKLSSVSLKNLRERYNIPLTGSAHRAMQDVTTLCYVLQKLTF 557
Query: 121 DLNFTLSDLLKTSFRAN 137
+L T+ LL+ SF+A+
Sbjct: 558 ELKLTVPQLLEKSFQAS 574
>gi|51969194|dbj|BAD43289.1| unknown protein [Arabidopsis thaliana]
Length = 316
Score = 138 bits (348), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 68/131 (51%), Positives = 89/131 (67%), Gaps = 1/131 (0%)
Query: 1 MVNRSYVPRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDN 60
MV R VPRME+LIPI ++YV SR PG + VAHN + FD FL EF+RCS IP N
Sbjct: 167 MVCRPEVPRMEELIPIFLRYVESRQKPGGYVMLVAHNGKSFDFQFLINEFNRCSYEIPHN 226
Query: 61 WRFLDTLPLARELMKQ-NGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERIT 119
W LD+LPLARE MK +V +SL+AL +Y+ + EG AHRA+SDV L+ + +++T
Sbjct: 227 WLLLDSLPLARENMKSVEPTVKLSSSLEALADYYSLTREGDAHRALSDVLLLSKVFQKLT 286
Query: 120 SDLNFTLSDLL 130
DL +LSDL+
Sbjct: 287 IDLKLSLSDLV 297
>gi|15240411|ref|NP_198046.1| exonuclease family protein [Arabidopsis thaliana]
gi|30690464|ref|NP_851082.1| exonuclease family protein [Arabidopsis thaliana]
gi|30690468|ref|NP_851083.1| exonuclease family protein [Arabidopsis thaliana]
gi|42573491|ref|NP_974842.1| exonuclease family protein [Arabidopsis thaliana]
gi|51968684|dbj|BAD43034.1| unknown protein [Arabidopsis thaliana]
gi|108385373|gb|ABF85778.1| At5g26940 [Arabidopsis thaliana]
gi|332006246|gb|AED93629.1| exonuclease family protein [Arabidopsis thaliana]
gi|332006247|gb|AED93630.1| exonuclease family protein [Arabidopsis thaliana]
gi|332006248|gb|AED93631.1| exonuclease family protein [Arabidopsis thaliana]
gi|332006249|gb|AED93632.1| exonuclease family protein [Arabidopsis thaliana]
Length = 316
Score = 138 bits (348), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 68/131 (51%), Positives = 89/131 (67%), Gaps = 1/131 (0%)
Query: 1 MVNRSYVPRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDN 60
MV R VPRME+LIPI ++YV SR PG + VAHN + FD FL EF+RCS IP N
Sbjct: 167 MVCRPEVPRMEELIPIFLRYVESRQKPGGYVMLVAHNGKSFDFQFLINEFNRCSYEIPHN 226
Query: 61 WRFLDTLPLARELMKQ-NGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERIT 119
W LD+LPLARE MK +V +SL+AL +Y+ + EG AHRA+SDV L+ + +++T
Sbjct: 227 WLLLDSLPLARENMKSVEPTVKLSSSLEALADYYSLTREGDAHRALSDVLLLSKVFQKLT 286
Query: 120 SDLNFTLSDLL 130
DL +LSDL+
Sbjct: 287 IDLKLSLSDLV 297
>gi|21592760|gb|AAM64709.1| unknown [Arabidopsis thaliana]
Length = 316
Score = 138 bits (348), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 68/131 (51%), Positives = 89/131 (67%), Gaps = 1/131 (0%)
Query: 1 MVNRSYVPRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDN 60
MV R VPRME+LIPI ++YV SR PG + VAHN + FD FL EF+RCS IP N
Sbjct: 167 MVCRPEVPRMEELIPIFLRYVESRQKPGGYVMLVAHNGKSFDFQFLINEFNRCSYEIPHN 226
Query: 61 WRFLDTLPLARELMKQ-NGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERIT 119
W LD+LPLARE MK +V +SL+AL +Y+ + EG AHRA+SDV L+ + +++T
Sbjct: 227 WLLLDSLPLARENMKSVEPTVKLSSSLEALADYYSLTREGDAHRALSDVLLLSKVFQKLT 286
Query: 120 SDLNFTLSDLL 130
DL +LSDL+
Sbjct: 287 IDLKLSLSDLV 297
>gi|357112616|ref|XP_003558104.1| PREDICTED: DNA polymerase III polC-type-like [Brachypodium
distachyon]
Length = 313
Score = 138 bits (347), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 63/137 (45%), Positives = 92/137 (67%), Gaps = 2/137 (1%)
Query: 1 MVNRSYVPRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDN 60
MV RS +PR + IPI+++YV SR G+ ++VAHN + FDVPFL EF RC M +P +
Sbjct: 170 MVCRSDIPRFGEFIPILLQYVLSRQMAGKPVLWVAHNGKTFDVPFLICEFQRCKMEMPGD 229
Query: 61 WRFLDTLPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITS 120
W F+DTLP+AR+L+ +G +L+ L E + IP+ G AHRAM DV +L +L+++T
Sbjct: 230 WLFVDTLPIARQLV--DGKTKGAATLKTLTERYKIPVNGDAHRAMQDVTALCYVLQKLTL 287
Query: 121 DLNFTLSDLLKTSFRAN 137
+L T+ LL+ SFR +
Sbjct: 288 ELKITVPQLLENSFRVS 304
>gi|326522268|dbj|BAK07596.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 323
Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 62/137 (45%), Positives = 93/137 (67%)
Query: 1 MVNRSYVPRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDN 60
MV S +PR + IPI+++YV SR G+ ++VAHN + FDVPFL EF RC +P +
Sbjct: 178 MVCSSDIPRFGEFIPILLQYVWSRQVAGKPVMWVAHNGKTFDVPFLIFEFQRCKQEMPGD 237
Query: 61 WRFLDTLPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITS 120
W F+DTLP+A++L+ NG S S++ L E++ IP++G AHRAM DV +L +L+++T
Sbjct: 238 WLFVDTLPIAKQLVDSNGKKISSASMKNLVEHYKIPVDGKAHRAMRDVTALCYVLQKLTF 297
Query: 121 DLNFTLSDLLKTSFRAN 137
+L T+ LL+ SFR +
Sbjct: 298 ELKLTVPQLLEKSFRVS 314
>gi|297808725|ref|XP_002872246.1| hypothetical protein ARALYDRAFT_910767 [Arabidopsis lyrata subsp.
lyrata]
gi|297318083|gb|EFH48505.1| hypothetical protein ARALYDRAFT_910767 [Arabidopsis lyrata subsp.
lyrata]
Length = 316
Score = 135 bits (340), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 66/131 (50%), Positives = 88/131 (67%), Gaps = 1/131 (0%)
Query: 1 MVNRSYVPRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDN 60
MV R VPRME+LIPI ++YV SR PG + VAHN + FD FL EF+RCS IP N
Sbjct: 167 MVCRPEVPRMEELIPIFLQYVESRQKPGGYVMLVAHNGKSFDFRFLINEFNRCSYEIPHN 226
Query: 61 WRFLDTLPLARELMKQ-NGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERIT 119
W LD+LPL RE MK + + K SL+ L+E++ + EG AHRA+SDV L+ + +++T
Sbjct: 227 WLLLDSLPLGREHMKSLDPTGKPKASLKVLQEHYSLTREGDAHRALSDVLLLSKVFQKLT 286
Query: 120 SDLNFTLSDLL 130
DL +LSDL+
Sbjct: 287 IDLKLSLSDLV 297
>gi|218192641|gb|EEC75068.1| hypothetical protein OsI_11194 [Oryza sativa Indica Group]
Length = 146
Score = 135 bits (339), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 63/137 (45%), Positives = 91/137 (66%)
Query: 1 MVNRSYVPRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDN 60
MV + +PR + IPI+++YV SR + ++VAHN R FDVPFL EF R + +P +
Sbjct: 1 MVCKPDIPRFREFIPILLQYVLSRQMADKPVLWVAHNGRSFDVPFLMYEFQRSKIEMPGD 60
Query: 61 WRFLDTLPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITS 120
W F+DTLP+AR+L+ +G SL LRE++ IPL GSAHRAM DV +L +L+++T
Sbjct: 61 WLFVDTLPIARQLIDSDGEKLKSVSLDNLREHYKIPLAGSAHRAMQDVITLCYVLQKLTF 120
Query: 121 DLNFTLSDLLKTSFRAN 137
+L T+ LL+ SFR +
Sbjct: 121 ELKLTVPQLLERSFRVS 137
>gi|115452527|ref|NP_001049864.1| Os03g0301400 [Oryza sativa Japonica Group]
gi|108707691|gb|ABF95486.1| exonuclease family protein, expressed [Oryza sativa Japonica Group]
gi|113548335|dbj|BAF11778.1| Os03g0301400 [Oryza sativa Japonica Group]
gi|215678888|dbj|BAG95325.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 313
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/137 (45%), Positives = 91/137 (66%)
Query: 1 MVNRSYVPRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDN 60
MV + +PR + IP++++YV SR + ++VAHN R FDVPFL EF R + +P +
Sbjct: 168 MVCKPDIPRFREFIPLLLQYVLSRQMADKPVLWVAHNGRSFDVPFLMYEFQRSKIEMPGD 227
Query: 61 WRFLDTLPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITS 120
W F+DTLP+AR+L+ +G SL LRE++ IPL GSAHRAM DV +L +L+++T
Sbjct: 228 WLFVDTLPIARQLIGSDGEKLKSVSLDNLREHYKIPLAGSAHRAMQDVITLCYVLQKLTF 287
Query: 121 DLNFTLSDLLKTSFRAN 137
+L T+ LL+ SFR +
Sbjct: 288 ELKLTVPQLLERSFRVS 304
>gi|222624763|gb|EEE58895.1| hypothetical protein OsJ_10524 [Oryza sativa Japonica Group]
Length = 901
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/137 (45%), Positives = 91/137 (66%)
Query: 1 MVNRSYVPRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDN 60
MV + +PR + IP++++YV SR + ++VAHN R FDVPFL EF R + +P +
Sbjct: 756 MVCKPDIPRFREFIPLLLQYVLSRQMADKPVLWVAHNGRSFDVPFLMYEFQRSKIEMPGD 815
Query: 61 WRFLDTLPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITS 120
W F+DTLP+AR+L+ +G SL LRE++ IPL GSAHRAM DV +L +L+++T
Sbjct: 816 WLFVDTLPIARQLIGSDGEKLKSVSLDNLREHYKIPLAGSAHRAMQDVITLCYVLQKLTF 875
Query: 121 DLNFTLSDLLKTSFRAN 137
+L T+ LL+ SFR +
Sbjct: 876 ELKLTVPQLLERSFRVS 892
>gi|357162123|ref|XP_003579312.1| PREDICTED: DNA polymerase III polC-type-like [Brachypodium
distachyon]
Length = 265
Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 95/140 (67%), Gaps = 3/140 (2%)
Query: 1 MVNRSYVPRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDN 60
MV R +PR D++P+++ +V SR PG+ I+VAH A+ FD PFLA+EF RCS+ +P +
Sbjct: 120 MVRRHDIPRFGDVLPLLLAFVQSRQTPGKPVIWVAHRAKAFDAPFLAREFDRCSVQMPTD 179
Query: 61 WRFLDTLPLARELMKQNGSVSSK---TSLQALREYFGIPLEGSAHRAMSDVNSLASILER 117
W F+D++ LAR+L S K +L+ALR+++GI +EGSAHRAM DV +L + ++
Sbjct: 180 WLFVDSVCLARKLPNMPKSSDGKKHLVNLEALRKHYGIRMEGSAHRAMQDVTTLCQVFQK 239
Query: 118 ITSDLNFTLSDLLKTSFRAN 137
IT DLN + L+ + +++
Sbjct: 240 ITFDLNLSYEGLMNDATKSS 259
>gi|242077240|ref|XP_002448556.1| hypothetical protein SORBIDRAFT_06g028980 [Sorghum bicolor]
gi|241939739|gb|EES12884.1| hypothetical protein SORBIDRAFT_06g028980 [Sorghum bicolor]
Length = 283
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 64/135 (47%), Positives = 91/135 (67%), Gaps = 1/135 (0%)
Query: 1 MVNRSYVPRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDN 60
+V R VPR D++PI++ YV SR PG+ +++AHNA+ FDVPFL +EF RCS +P +
Sbjct: 142 LVCRPDVPRFSDVLPILLAYVRSRQAPGKPVLWIAHNAKGFDVPFLNQEFDRCSAQVPSD 201
Query: 61 WRFLDTLPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITS 120
W F+D+L LAR+L K +G + +L AL E +G+ EG +HRAM DV +L +IL +IT
Sbjct: 202 WLFVDSLRLARKLKKIDGK-KNLVNLVALGERYGLSSEGPSHRAMPDVEALCNILPKITL 260
Query: 121 DLNFTLSDLLKTSFR 135
DL T DL+ + R
Sbjct: 261 DLKLTCDDLMNEAMR 275
>gi|302799380|ref|XP_002981449.1| hypothetical protein SELMODRAFT_420926 [Selaginella moellendorffii]
gi|300150989|gb|EFJ17637.1| hypothetical protein SELMODRAFT_420926 [Selaginella moellendorffii]
Length = 1254
Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 63/137 (45%), Positives = 87/137 (63%)
Query: 1 MVNRSYVPRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDN 60
MVN+ +VP +++ P +I++V SR E I VAHN +RFDVPFL KEF C + +P+
Sbjct: 234 MVNKPHVPSWKEVGPSIIQFVESRRKGDEPVILVAHNGKRFDVPFLLKEFQSCGIQVPEW 293
Query: 61 WRFLDTLPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITS 120
W FLD++PLARE K+ G L L E +G+ AHRAM+DVN LAS+LE I S
Sbjct: 294 WLFLDSMPLARETKKKFGYNWRSLKLSVLHEAYGLHSTERAHRAMADVNMLASVLEAIVS 353
Query: 121 DLNFTLSDLLKTSFRAN 137
+L S+ L+ +F A+
Sbjct: 354 ELQLPASEFLEKAFTAD 370
>gi|125549801|gb|EAY95623.1| hypothetical protein OsI_17478 [Oryza sativa Indica Group]
Length = 260
Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 60/137 (43%), Positives = 93/137 (67%), Gaps = 1/137 (0%)
Query: 1 MVNRSYVPRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDN 60
+V R +PR D+IP+++ +V SR PG+ ++VAHNA++FD FLA+EF RCS +P +
Sbjct: 119 LVCRPGIPRFSDVIPLLLAFVRSRQAPGKPVLWVAHNAKQFDARFLAQEFDRCSAPLPAD 178
Query: 61 WRFLDTLPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITS 120
W F DTL LA++++K G +TSL+ALRE++GI AHRAM DV L+ + +++T
Sbjct: 179 WLFFDTLLLAKKMVKAEGK-KRRTSLEALREHYGIVSHDDAHRAMRDVMILSQVFQKMTF 237
Query: 121 DLNFTLSDLLKTSFRAN 137
DL T +L+ + +A+
Sbjct: 238 DLKLTNEELINEAMKAS 254
>gi|38344168|emb|CAE03499.2| OSJNBa0053K19.7 [Oryza sativa Japonica Group]
gi|116309750|emb|CAH66793.1| H0215F08.4 [Oryza sativa Indica Group]
gi|125591688|gb|EAZ32038.1| hypothetical protein OsJ_16216 [Oryza sativa Japonica Group]
gi|215712387|dbj|BAG94514.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 260
Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 60/137 (43%), Positives = 93/137 (67%), Gaps = 1/137 (0%)
Query: 1 MVNRSYVPRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDN 60
+V R +PR D+IP+++ +V SR PG+ ++VAHNA++FD FLA+EF RCS +P +
Sbjct: 119 LVCRPGIPRFSDVIPLLLAFVRSRQAPGKPVLWVAHNAKQFDARFLAQEFDRCSAPLPAD 178
Query: 61 WRFLDTLPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITS 120
W F DTL LA++++K G +TSL+ALRE++GI AHRAM DV L+ + +++T
Sbjct: 179 WLFFDTLLLAKKMVKAEGK-KRRTSLEALREHYGIVSHDDAHRAMRDVMILSQVFQKMTF 237
Query: 121 DLNFTLSDLLKTSFRAN 137
DL T +L+ + +A+
Sbjct: 238 DLKLTNEELINEAMKAS 254
>gi|115460648|ref|NP_001053924.1| Os04g0623400 [Oryza sativa Japonica Group]
gi|113565495|dbj|BAF15838.1| Os04g0623400 [Oryza sativa Japonica Group]
Length = 282
Score = 128 bits (321), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 60/138 (43%), Positives = 92/138 (66%), Gaps = 1/138 (0%)
Query: 1 MVNRSYVPRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDN 60
+V R +PR D+IP+++ +V SR PG+ ++VAHNA++FD FLA+EF RCS +P +
Sbjct: 119 LVCRPGIPRFSDVIPLLLAFVRSRQAPGKPVLWVAHNAKQFDARFLAQEFDRCSAPLPAD 178
Query: 61 WRFLDTLPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITS 120
W F DTL LA++++K G +TSL+ALRE++GI AHRAM DV L+ + +++T
Sbjct: 179 WLFFDTLLLAKKMVKAEGK-KRRTSLEALREHYGIVSHDDAHRAMRDVMILSQVFQKMTF 237
Query: 121 DLNFTLSDLLKTSFRANF 138
DL T +L+ + + F
Sbjct: 238 DLKLTNEELINEAMKLPF 255
>gi|302773125|ref|XP_002969980.1| hypothetical protein SELMODRAFT_440920 [Selaginella moellendorffii]
gi|300162491|gb|EFJ29104.1| hypothetical protein SELMODRAFT_440920 [Selaginella moellendorffii]
Length = 1208
Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 63/137 (45%), Positives = 86/137 (62%)
Query: 1 MVNRSYVPRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDN 60
MVN+ +VP +++ P +I++V SR E I VAHN +RFDVPFL KEF C + +P+
Sbjct: 234 MVNKPHVPSWKEVGPSIIQFVESRRKGDEPVILVAHNGKRFDVPFLLKEFQSCGIQVPEW 293
Query: 61 WRFLDTLPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITS 120
W FLD++PLARE K+ G L L E +G+ AHRAM+DVN LAS+LE I S
Sbjct: 294 WLFLDSMPLAREAKKKFGYNWRSLKLSVLHEAYGLHSTERAHRAMADVNMLASVLEAIVS 353
Query: 121 DLNFTLSDLLKTSFRAN 137
+L S L+ +F A+
Sbjct: 354 ELQLPASVFLEKAFTAD 370
>gi|357511767|ref|XP_003626172.1| DNA polymerase III polC-type [Medicago truncatula]
gi|355501187|gb|AES82390.1| DNA polymerase III polC-type [Medicago truncatula]
Length = 266
Score = 108 bits (270), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 49/79 (62%), Positives = 57/79 (72%)
Query: 1 MVNRSYVPRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDN 60
MV+R VPRMEDL+PI+ YV SR P ++V HNAR FDVPF+ EF RCS IP N
Sbjct: 184 MVSRPGVPRMEDLVPILFHYVKSREKPRGYVLWVGHNARVFDVPFIINEFRRCSTQIPPN 243
Query: 61 WRFLDTLPLARELMKQNGS 79
W F+DTLPLAR+LMK GS
Sbjct: 244 WLFVDTLPLARQLMKSEGS 262
>gi|167999243|ref|XP_001752327.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696722|gb|EDQ83060.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1960
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 82/138 (59%), Gaps = 1/138 (0%)
Query: 1 MVNRSYVPRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDN 60
MVNR +P +++ + +V SR I VAHN RRFDVPF+ KE CSM IP +
Sbjct: 308 MVNRDDIPSWTEVMTAFVDFVESRRIGNSDVILVAHNGRRFDVPFIMKECYECSMEIPSH 367
Query: 61 WRFLDTLPLARELMKQNGSVSSKTSLQAL-REYFGIPLEGSAHRAMSDVNSLASILERIT 119
W F+DT+ LA+ ++K+ + +LQ L + + +P AHRA DV+ LAS+ ++
Sbjct: 368 WYFIDTIDLAKAMLKKRFGKTKLYNLQFLYYDCYKLPRLEDAHRAGVDVDMLASVFGKLL 427
Query: 120 SDLNFTLSDLLKTSFRAN 137
+L +S+LL +F+A+
Sbjct: 428 MELEMPVSELLDQAFKAS 445
>gi|255070749|ref|XP_002507456.1| exonuclease and DNA helicase [Micromonas sp. RCC299]
gi|226522731|gb|ACO68714.1| exonuclease and DNA helicase [Micromonas sp. RCC299]
Length = 1473
Score = 84.3 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 43/121 (35%), Positives = 67/121 (55%), Gaps = 3/121 (2%)
Query: 1 MVNRSYVPRMEDLIPIVIKYVNS--RLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIP 58
MV+ VP + + +Y++ R G + AHNAR+FD FL E+ R +P
Sbjct: 353 MVSAPAVPSFQRAAELFQEYIDEARRRCGGASVLLAAHNARQFDAGFLQAEYRRLGRELP 412
Query: 59 DNWRFLDTLPLARELMKQNGSVSSKTSLQALREYFGIPLEG-SAHRAMSDVNSLASILER 117
++WRF+DTLPLAR+ + + L++L +FG+ G SAHRA +D L +L+R
Sbjct: 413 EDWRFVDTLPLARKTLAKEAVPGGSYKLESLAAHFGVDTAGASAHRAEADARMLGDVLQR 472
Query: 118 I 118
+
Sbjct: 473 L 473
>gi|412990669|emb|CCO18041.1| ATP-dependent DNA helicase RecG [Bathycoccus prasinos]
Length = 1412
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/96 (44%), Positives = 67/96 (69%), Gaps = 5/96 (5%)
Query: 28 GEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQ 87
GE+ + AHNAR+FD FL +E+ R +P +WRFLDTLPL+R ++K++G ++K +L
Sbjct: 404 GEV-LLAAHNARQFDSSFLQREYWRLGREMPSHWRFLDTLPLSRSVLKKSG--NTKFTLD 460
Query: 88 ALREYFGIPL-EGS-AHRAMSDVNSLASILERITSD 121
ALRE++ I + EG HRA +DV L+ I+ ++ +D
Sbjct: 461 ALREHYEITINEGDMMHRAFTDVKVLSRIIHQLLAD 496
>gi|308807965|ref|XP_003081293.1| DNA helicase RecG (ISS) [Ostreococcus tauri]
gi|116059755|emb|CAL55462.1| DNA helicase RecG (ISS) [Ostreococcus tauri]
Length = 1259
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 58/95 (61%), Gaps = 5/95 (5%)
Query: 27 PGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSL 86
PG + VAHNAR+FD F+ E+ R +P +WRF DTLPLAR+L++ +G K S+
Sbjct: 280 PGAPVLLVAHNARQFDAAFIQYEYRRLGRELPSSWRFCDTLPLARQLLRPDG--LGKFSM 337
Query: 87 QALREYFGIPLEGS---AHRAMSDVNSLASILERI 118
LR ++ I LEG HRA +D LA IL ++
Sbjct: 338 DVLRGHYDIELEGGDVQMHRAGTDARVLADILNKM 372
>gi|384253013|gb|EIE26488.1| P-loop containing nucleoside triphosphate hydrolase protein
[Coccomyxa subellipsoidea C-169]
Length = 1115
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 40/109 (36%), Positives = 64/109 (58%), Gaps = 3/109 (2%)
Query: 1 MVNRSYVPRMEDLIPIVIKYVNSRLGPGE-IAIFVAHNARRFDVPFLAKEFSRCSMNIPD 59
MV+ +P + + + +++S + + + +AHN RRFD+PFLA EF+R IP
Sbjct: 331 MVHDPSLPTSREAVQQFMDFIDSHCASEDTVPVLIAHNGRRFDIPFLAMEFAREGFKIPA 390
Query: 60 NWRFLDTLPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDV 108
NW F+DTL +A++++ ++ S K L +RE+FGI HRA DV
Sbjct: 391 NWHFMDTLMVAQKVIDRDNIQSLK--LTDMREHFGISAPSVEHRAWQDV 437
>gi|303271977|ref|XP_003055350.1| DNA helicase/exonuclease [Micromonas pusilla CCMP1545]
gi|226463324|gb|EEH60602.1| DNA helicase/exonuclease [Micromonas pusilla CCMP1545]
Length = 1468
Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 45/120 (37%), Positives = 68/120 (56%), Gaps = 5/120 (4%)
Query: 1 MVNRSYVPRMEDLIPIVIKYVNS--RLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIP 58
MV+ VP ++ ++V+ R G G I AHNAR+FD FL E+ R P
Sbjct: 365 MVSNPGVPSFVRAAELLEEFVDEARRRGGGASVILAAHNARQFDAGFLKAEYDRIQREFP 424
Query: 59 DNWRFLDTLPLARELMKQNGSVSSKTSLQALREYFGI-PLEG-SAHRAMSDVNSLASILE 116
D+WRF+DTLP+AR+L+ + V ++AL + + P++G +AHRA +D L I+E
Sbjct: 425 DDWRFVDTLPIARKLVPKT-EVFGSHKMEALATRYDVKPVDGETAHRAGADARVLGEIVE 483
>gi|297620852|ref|YP_003708989.1| DNA polymerase III, epsilon chain [Waddlia chondrophila WSU
86-1044]
gi|297376153|gb|ADI37983.1| DNA polymerase III, epsilon chain [Waddlia chondrophila WSU
86-1044]
gi|337293888|emb|CCB91876.1| DNA polymerase III, epsilon chain [Waddlia chondrophila 2032/99]
Length = 231
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 53/97 (54%), Gaps = 6/97 (6%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
I +AHN FDV FL EF R ++ +P+ WRF DTL AR + +LQ LR
Sbjct: 82 VILIAHNNDNFDVHFLRHEFKRHALEMPE-WRFFDTLKWARRYRPD----LPRHALQFLR 136
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILERITSDLNFTLS 127
E + I +AHRA+ DV L + E+++ DL+ S
Sbjct: 137 EIYSIEA-NNAHRALDDVIVLHKVFEKMSDDLDIEQS 172
>gi|46446795|ref|YP_008160.1| DNA polymerase III subunit epsilon [Candidatus Protochlamydia
amoebophila UWE25]
gi|46400436|emb|CAF23885.1| putative DNA polymerase III, epsilon chain, mutD [Candidatus
Protochlamydia amoebophila UWE25]
Length = 216
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 53/95 (55%), Gaps = 6/95 (6%)
Query: 28 GEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQ 87
GE+ + +AHN FD+ FL EF R + +P +W+FLD+L AR S + +LQ
Sbjct: 59 GEV-VLIAHNNDNFDLHFLRHEFERNQLILPTHWKFLDSLKWARRYR----SDLPRHTLQ 113
Query: 88 ALREYFGIPLEGSAHRAMSDVNSLASILERITSDL 122
LRE +GI +AHRA+ DV L + + DL
Sbjct: 114 FLREIYGI-TANNAHRALDDVIVLERVFRSMVDDL 147
>gi|338732703|ref|YP_004671176.1| hypothetical protein SNE_A08080 [Simkania negevensis Z]
gi|336482086|emb|CCB88685.1| putative uncharacterized protein [Simkania negevensis Z]
Length = 232
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 52/95 (54%), Gaps = 7/95 (7%)
Query: 28 GEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQ 87
GE+ + +AHN FD+PF+ EF R + +P W ++D+L +R+ + SLQ
Sbjct: 80 GEV-VLIAHNNDAFDLPFIRSEFERNELTLP-KWPYIDSLKFSRKYRPD----LPRHSLQ 133
Query: 88 ALREYFGIPLEGSAHRAMSDVNSLASILERITSDL 122
LREY G P +AHRA+ DV L + + DL
Sbjct: 134 HLREYHGFPA-NNAHRALDDVIVLHQVFSEMIDDL 167
>gi|282890058|ref|ZP_06298591.1| hypothetical protein pah_c010o048 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|338174978|ref|YP_004651788.1| DNA polymerase III subunit epsilon [Parachlamydia acanthamoebae
UV-7]
gi|281500064|gb|EFB42350.1| hypothetical protein pah_c010o048 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|336479336|emb|CCB85934.1| DNA polymerase III subunit epsilon [Parachlamydia acanthamoebae
UV-7]
Length = 231
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 50/92 (54%), Gaps = 6/92 (6%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+ +AHN +FD+ FL EF R + +P W+FLDTL AR + +LQ LR
Sbjct: 81 VLIAHNNDQFDIHFLRNEFKRSNQELPP-WKFLDTLKWARRYRND----LPRHTLQFLRG 135
Query: 92 YFGIPLEGSAHRAMSDVNSLASILERITSDLN 123
+GI E +AHRA+ DV L + + DL+
Sbjct: 136 IYGI-AENNAHRALDDVIVLHQVFSAMLDDLS 166
>gi|365833259|ref|ZP_09374779.1| exonuclease, DNA polymerase III, epsilon subunit [Coprobacillus sp.
3_3_56FAA]
gi|365258347|gb|EHM88355.1| exonuclease, DNA polymerase III, epsilon subunit [Coprobacillus sp.
3_3_56FAA]
Length = 224
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 55/105 (52%), Gaps = 6/105 (5%)
Query: 28 GEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQ 87
GE I VAHN +FD+PFL + R ++ LDT+ L++ L N +
Sbjct: 123 GESKISVAHNGAKFDIPFLKEACKRSNVEFKFT-HILDTMLLSKALNYVNNGNIPNNKQE 181
Query: 88 ALREYFGIPLEGSAHRAMSDVNSLASILERITSD---LNFTLSDL 129
L YFGI E AHRA++D +L I +++ +D +NF+L +
Sbjct: 182 TLARYFGI--EYQAHRAVNDCEALLKIFDKLKNDAENINFSLKKI 224
>gi|330444392|ref|YP_004377378.1| DNA polymerase III subunit epsilon [Chlamydophila pecorum E58]
gi|328807502|gb|AEB41675.1| DNA polymerase III epsilon chain [Chlamydophila pecorum E58]
Length = 232
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 53/104 (50%), Gaps = 6/104 (5%)
Query: 20 YVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGS 79
Y N + G +I VAHN FD+P L KE R S+ P N R +D+L A++
Sbjct: 70 YHNFKQFCGSASILVAHNNDNFDLPLLQKECQRYSLE-PLNLRTIDSLKWAKKYRPD--- 125
Query: 80 VSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITSDLN 123
K +LQ LR+ +G E AHRA+ DV +L + + DL
Sbjct: 126 -LPKHNLQYLRQVYGF-AENQAHRALDDVITLHKVFSALVGDLT 167
>gi|307110876|gb|EFN59111.1| hypothetical protein CHLNCDRAFT_137905 [Chlorella variabilis]
Length = 357
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 47/89 (52%), Gaps = 7/89 (7%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+ V HNA FD L E+ R + +P WR LDTLPLARE + + T LR+
Sbjct: 211 LVVGHNAP-FDARMLIAEWGRRDLPVPREWRLLDTLPLARECVPDCANHKQGT----LRQ 265
Query: 92 YFGIPL-EGSA-HRAMSDVNSLASILERI 118
FG+ L G A H A SDV LA +L +
Sbjct: 266 RFGVTLAPGEAEHDAGSDVTVLAQLLPHL 294
>gi|187251744|ref|YP_001876226.1| DNA polymerase III subunit epsilon [Elusimicrobium minutum Pei191]
gi|186971904|gb|ACC98889.1| DNA polymerase III, epsilon subunit [Elusimicrobium minutum Pei191]
Length = 201
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 54/100 (54%), Gaps = 15/100 (15%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
P ED+ P++I + ++ V HNA FD+PFLA EF+RC + +P LDTL
Sbjct: 77 PYFEDIAPLLIGLLTD-------SVIVCHNAD-FDIPFLAAEFARCGLRMPQTV-ILDTL 127
Query: 68 PLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSD 107
AR +NG+ K +L + G+ EG HRAM+D
Sbjct: 128 KFAR----KNGNF-KKNNLGFIVSELGLSNEGW-HRAMAD 161
>gi|302841163|ref|XP_002952127.1| hypothetical protein VOLCADRAFT_92718 [Volvox carteri f.
nagariensis]
gi|300262713|gb|EFJ46918.1| hypothetical protein VOLCADRAFT_92718 [Volvox carteri f.
nagariensis]
Length = 1059
Score = 55.8 bits (133), Expect = 5e-06, Method: Composition-based stats.
Identities = 35/100 (35%), Positives = 50/100 (50%), Gaps = 5/100 (5%)
Query: 20 YVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGS 79
Y R G G V HN R +D PFLA+ +R +P +W +D+L LAR +
Sbjct: 62 YQRCRAGGGVRPALVGHNLRVYDSPFLARMLARQGCLVPYSWCMVDSLRLARRWKLWSSR 121
Query: 80 VSSKTSLQALREYFGIPLEGSAHRAMSD----VNSLASIL 115
LQ+LRE + IP HRA+ D V+ LA+++
Sbjct: 122 GGGDFKLQSLRELYNIPRR-DEHRALPDALVTVDVLAAMV 160
>gi|237732820|ref|ZP_04563301.1| DNA polymerase III subunit epsilon [Mollicutes bacterium D7]
gi|229384061|gb|EEO34152.1| DNA polymerase III subunit epsilon [Coprobacillus sp. D7]
Length = 224
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 55/105 (52%), Gaps = 6/105 (5%)
Query: 28 GEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQ 87
GE I VAHN +FD+PFL + R ++ LDT+ L++ L N +
Sbjct: 123 GESKISVAHNGLKFDIPFLKEACKRSNVEFKFT-HILDTMLLSKALNYVNNGNIPNNKQE 181
Query: 88 ALREYFGIPLEGSAHRAMSDVNSLASILERITSD---LNFTLSDL 129
L YFG+ + AHRA++D +L I +++ +D +NF+L +
Sbjct: 182 TLARYFGVDYQ--AHRAVNDCEALLKIFDKLKNDAKNINFSLKKI 224
>gi|255543098|ref|XP_002512612.1| hypothetical protein RCOM_1437290 [Ricinus communis]
gi|223548573|gb|EEF50064.1| hypothetical protein RCOM_1437290 [Ricinus communis]
Length = 211
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 46/104 (44%), Gaps = 11/104 (10%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
I V HN FD P L EF ++P +W +DTLPLAR+ K G +LR
Sbjct: 102 TIIVVHNGCTFDAPLLINEFKSDGSDVPSDWPLMDTLPLARKWTKSKGP--------SLR 153
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILERITSDLNFTLSDLLKTSF 134
Y + + + AS +TSDL TL L+ SF
Sbjct: 154 IYIHMDHQLIEQGRCEVIGKTAS---DVTSDLKATLPRLVAESF 194
>gi|33241759|ref|NP_876700.1| DNA polymerase III subunit epsilon [Chlamydophila pneumoniae
TW-183]
gi|33236268|gb|AAP98357.1| DNA-directed DNA polymerase III alpha chain [Chlamydophila
pneumoniae TW-183]
Length = 232
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 55/109 (50%), Gaps = 7/109 (6%)
Query: 28 GEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQ 87
GE +I VAHN FD P L KE R S+ P R +D+L A++ K +LQ
Sbjct: 78 GEDSILVAHNNDGFDFPLLGKECRRHSLE-PLTNRTIDSLKWAQKYRPD----LPKHNLQ 132
Query: 88 ALREYFGIPLEGSAHRAMSDVNSLASILERITSDL-NFTLSDLLKTSFR 135
LR+ +G E AHRA+ DV L + + DL + DLL+ S+
Sbjct: 133 YLRQVYGF-AENQAHRALDDVVILHKVFTSLIGDLPPQQVLDLLQQSYH 180
>gi|15618325|ref|NP_224610.1| DNA polymerase III subunit epsilon [Chlamydophila pneumoniae
CWL029]
gi|15835943|ref|NP_300467.1| DNA polymerase III subunit epsilon [Chlamydophila pneumoniae J138]
gi|16752629|ref|NP_444893.1| DNA polymerase III subunit epsilon [Chlamydophila pneumoniae AR39]
gi|384449330|ref|YP_005661932.1| DNA polymerase III subunit epsilon family exonuclease
[Chlamydophila pneumoniae LPCoLN]
gi|4376690|gb|AAD18554.1| DNA Polymerase III Epsilon Chain [Chlamydophila pneumoniae CWL029]
gi|8163413|gb|AAF73657.1| DNA polymerase III, epsilon subunit, putative [Chlamydophila
pneumoniae AR39]
gi|8978782|dbj|BAA98618.1| DNA polymerase III epsilon chain [Chlamydophila pneumoniae J138]
gi|269303286|gb|ACZ33386.1| exonuclease, DNA polymerase III, epsilon subunit family
[Chlamydophila pneumoniae LPCoLN]
Length = 237
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 55/109 (50%), Gaps = 7/109 (6%)
Query: 28 GEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQ 87
GE +I VAHN FD P L KE R S+ P R +D+L A++ K +LQ
Sbjct: 83 GEDSILVAHNNDGFDFPLLGKECRRHSLE-PLTNRTIDSLKWAQKYRPD----LPKHNLQ 137
Query: 88 ALREYFGIPLEGSAHRAMSDVNSLASILERITSDL-NFTLSDLLKTSFR 135
LR+ +G E AHRA+ DV L + + DL + DLL+ S+
Sbjct: 138 YLRQVYGF-AENQAHRALDDVVILHKVFTSLIGDLPPQQVLDLLQQSYH 185
>gi|385799864|ref|YP_005836268.1| DNA polymerase III catalytic subunit, PolC type [Halanaerobium
praevalens DSM 2228]
gi|309389228|gb|ADO77108.1| DNA polymerase III catalytic subunit, PolC type [Halanaerobium
praevalens DSM 2228]
Length = 1404
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 56/110 (50%), Gaps = 7/110 (6%)
Query: 9 RMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLP 68
RM P + K +N + + VAHNA FD F+ + + D++ LDTL
Sbjct: 449 RMVKNAPGLEKVINDFIEFAGTGVLVAHNAD-FDYGFIRTALEKLEIE-KDDYTVLDTLG 506
Query: 69 LARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERI 118
L+R ++K S L L +YFG+ LE + HRA+ D N+ A +L ++
Sbjct: 507 LSRAVVKD----SKNHKLNTLAKYFGVDLE-NHHRALDDANATAEVLAKL 551
>gi|298369304|ref|ZP_06980622.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
sp. oral taxon 014 str. F0314]
gi|298283307|gb|EFI24794.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
sp. oral taxon 014 str. F0314]
Length = 463
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 37/87 (42%), Positives = 50/87 (57%), Gaps = 8/87 (9%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
A+ VAHN+R FD FL EF R M+ L T+ L+R L Q + +L ++
Sbjct: 99 AVVVAHNSR-FDYTFLRHEFRRAGMDFAAP--ALCTVQLSRRLYPQ----FYRHNLDSII 151
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILER 117
E FGI +E S HRAM+DV +L+ LER
Sbjct: 152 ERFGIAVE-SRHRAMADVAALSDFLER 177
>gi|29840147|ref|NP_829253.1| DNA polymerase III subunit epsilon [Chlamydophila caviae GPIC]
gi|29834495|gb|AAP05131.1| DNA polymerase III, epsilon chain [Chlamydophila caviae GPIC]
Length = 228
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 51/96 (53%), Gaps = 6/96 (6%)
Query: 28 GEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQ 87
G AI VAHN FD P L KE R S+ P + R +D+L A++ K +LQ
Sbjct: 78 GNEAILVAHNNDSFDFPLLEKECRRHSLE-PLSLRTIDSLKWAQKYRPD----LPKHNLQ 132
Query: 88 ALREYFGIPLEGSAHRAMSDVNSLASILERITSDLN 123
LR+ +G E AHRA+ DV +L ++ + DL+
Sbjct: 133 YLRQVYGF-AENQAHRALDDVITLYNVFSALIGDLS 167
>gi|190571471|ref|YP_001975829.1| DNA polymerase III subunit epsilon [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|213018874|ref|ZP_03334682.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
Culex quinquefasciatus JHB]
gi|190357743|emb|CAQ55194.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
Culex quinquefasciatus Pel]
gi|212995825|gb|EEB56465.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
Culex quinquefasciatus JHB]
Length = 234
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 47/92 (51%), Gaps = 7/92 (7%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
I V HNA FDV FL E + + + + R LDTLPLAR+ V S SL AL +
Sbjct: 89 ILVIHNAE-FDVKFLNMELGKLNAGLISSDRVLDTLPLARKKF-----VGSPASLNALCK 142
Query: 92 YFGIPLEG-SAHRAMSDVNSLASILERITSDL 122
F I LEG H A+ D LA + +T L
Sbjct: 143 RFDISLEGRELHGALVDAQLLAKVYVELTGGL 174
>gi|416355692|ref|ZP_11681871.1| DNA polymerase III PolC [Clostridium botulinum C str. Stockholm]
gi|338195166|gb|EGO87486.1| DNA polymerase III PolC [Clostridium botulinum C str. Stockholm]
Length = 159
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 60/115 (52%), Gaps = 11/115 (9%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
++ VAHNA FD+ F+ K + ++I +N+ F+DT+PLA+ L + + L +
Sbjct: 38 SVLVAHNAN-FDMSFIRKNCN--DLSIDNNYTFMDTVPLAKFLFPE----LKRYKLNTIA 90
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILE---RITSDLNFTLSDLLKTSFRANFDHSK 142
++ G+ LE HRA+ D + A IL ++ D+ T D L F N D K
Sbjct: 91 KHLGVSLENH-HRAVDDAKATADILLCCFKLLDDMKITSLDSLNKEFLGNIDVKK 144
>gi|353328390|ref|ZP_08970717.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont wVitB
of Nasonia vitripennis]
Length = 234
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 48/92 (52%), Gaps = 7/92 (7%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
I V HNA FD+ FL E ++ + + + R LDTLPLAR+ V S SL AL +
Sbjct: 89 ILVIHNAE-FDIKFLNMELNKLNAGLISSDRVLDTLPLARKKF-----VGSPASLNALCK 142
Query: 92 YFGIPLEG-SAHRAMSDVNSLASILERITSDL 122
F I LEG H A+ D LA + +T L
Sbjct: 143 RFDISLEGRELHGALVDAQLLAKVYVELTGGL 174
>gi|257068588|ref|YP_003154843.1| hypothetical protein Bfae_14220 [Brachybacterium faecium DSM 4810]
gi|256559406|gb|ACU85253.1| exonuclease, DNA polymerase III, epsilon subunit family
[Brachybacterium faecium DSM 4810]
Length = 551
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 43/134 (32%), Positives = 66/134 (49%), Gaps = 16/134 (11%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
P + ++P+ + + A VAHNAR FD+ FL+ + + C + P R LDTL
Sbjct: 84 PSIRTVLPMFLDFAGD-------AALVAHNAR-FDIGFLSAQAAACEITWPRP-RVLDTL 134
Query: 68 PLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSD----VNSLASILERITSDLN 123
LAR + +++ + S A GI + HRA+SD V+ L +I+ER+
Sbjct: 135 ALARTVFRRDEVRDHRLSTLARHVGAGITPD---HRALSDARATVDVLHAIIERLGPSGA 191
Query: 124 FTLSDLLKTSFRAN 137
TL DL RA+
Sbjct: 192 STLEDLGTAHRRAS 205
>gi|373451004|ref|ZP_09542942.1| DNA polymerase III subunit epsilon [Wolbachia pipientis wAlbB]
gi|371931783|emb|CCE77960.1| DNA polymerase III subunit epsilon [Wolbachia pipientis wAlbB]
Length = 234
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 47/92 (51%), Gaps = 7/92 (7%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
I V HNA FD+ FL E + + + + R LDTLPLAR+ V S SL AL +
Sbjct: 89 ILVIHNAE-FDIKFLNMELGKLNAGLISSDRVLDTLPLARKKF-----VGSPASLNALCK 142
Query: 92 YFGIPLEG-SAHRAMSDVNSLASILERITSDL 122
F I LEG H A+ D LA + +T L
Sbjct: 143 RFDISLEGRELHGALVDAQLLAKVYVELTGGL 174
>gi|336179029|ref|YP_004584404.1| DNA polymerase III subunit epsilon [Frankia symbiont of Datisca
glomerata]
gi|334860009|gb|AEH10483.1| DNA polymerase III, epsilon subunit [Frankia symbiont of Datisca
glomerata]
Length = 629
Score = 52.0 bits (123), Expect = 7e-05, Method: Composition-based stats.
Identities = 34/109 (31%), Positives = 60/109 (55%), Gaps = 14/109 (12%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
PR++ +P +++ + ++ VAHNA FD+ FL + RC +PD W LDTL
Sbjct: 156 PRIDAALPTFLEFAHG-------SVLVAHNAP-FDLGFLREACVRCGHPVPD-WEHLDTL 206
Query: 68 PLARELMKQNGSVSSKTSLQALREYFGIPLE-GSAHRAMSDVNSLASIL 115
+AR+++ ++ + K L +L F P + G HRA++D + ++L
Sbjct: 207 RIARQVLGRDETPDHK--LASLARLF--PADAGPCHRALADARATVAVL 251
>gi|89898431|ref|YP_515541.1| DNA polymerase III subunit epsilon [Chlamydophila felis Fe/C-56]
gi|89331803|dbj|BAE81396.1| DNA polymerase III epsilon chain [Chlamydophila felis Fe/C-56]
Length = 228
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 49/96 (51%), Gaps = 6/96 (6%)
Query: 28 GEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQ 87
G A+ VAHN FD P L KE R S+ P R +D+L A++ K +LQ
Sbjct: 78 GNEAVLVAHNNDGFDFPLLEKECRRHSLE-PLTLRTIDSLKWAQKYRPD----LPKHNLQ 132
Query: 88 ALREYFGIPLEGSAHRAMSDVNSLASILERITSDLN 123
LR+ +G E AHRA+ DV +L + + DL+
Sbjct: 133 YLRQVYGF-AENQAHRALDDVITLHDVFSALIGDLS 167
>gi|253682510|ref|ZP_04863307.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
botulinum D str. 1873]
gi|253562222|gb|EES91674.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
botulinum D str. 1873]
Length = 1443
Score = 52.0 bits (123), Expect = 7e-05, Method: Composition-based stats.
Identities = 37/115 (32%), Positives = 60/115 (52%), Gaps = 11/115 (9%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
++ VAHNA FD+ F+ K + S++I N+ +DT+PLA+ L + + L +
Sbjct: 509 SVLVAHNAN-FDMSFIRKNCNDLSIDI--NYTVMDTVPLAKFLFPE----LKRYKLNTIA 561
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILE---RITSDLNFTLSDLLKTSFRANFDHSK 142
++ G+ LE + HRA+ D + A IL ++ D+ T D L F N D K
Sbjct: 562 KHLGVSLE-NHHRAVDDAKATADILLCCFKLLDDMKITSLDSLNKEFLGNIDVKK 615
>gi|292628026|ref|XP_002666829.1| PREDICTED: probable transcription factor PML-like isoform 1 [Danio
rerio]
gi|326679985|ref|XP_003201423.1| PREDICTED: probable transcription factor PML-like isoform 2 [Danio
rerio]
Length = 235
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 55/107 (51%), Gaps = 12/107 (11%)
Query: 32 IFVAHNARRFDVPFLAK---EFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQA 88
+ + HN RRFD P LA+ EFS S + F+DTLPLAR+L+K +G S K
Sbjct: 97 LLLGHNIRRFDCPVLARALDEFSLRSHFQREVSGFVDTLPLARQLLKDHGLQSFKQE-SL 155
Query: 89 LREYFGIPLEGSAHRAMSDVNSLASILERITSDLN------FTLSDL 129
++ G+ +AH A+ DV +L + ++ N FTL L
Sbjct: 156 VKNLLGVSY--AAHNALEDVQALQKLYWKLKPSANQIQQHTFTLDSL 200
>gi|118443832|ref|YP_878213.1| DNA polymerase III PolC [Clostridium novyi NT]
gi|118134288|gb|ABK61332.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
novyi NT]
Length = 1444
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 39/136 (28%), Positives = 66/136 (48%), Gaps = 18/136 (13%)
Query: 10 MEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPL 69
++ ++P IK+ E + VAHN+ FD+ F+ K +NI N+ +DT+PL
Sbjct: 496 IDKVLPKFIKF-------AEGTVLVAHNSN-FDMSFIRKNCK--DLNIECNYTVMDTIPL 545
Query: 70 ARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILE---RITSDLNFTL 126
A+ L + + L + ++ G+ LE + HRA+ D + IL ++ ++N T
Sbjct: 546 AKFLFPE----LKRYKLNTIAKHLGVSLE-NHHRAVDDAKATGDILVHCFKLLKEMNITY 600
Query: 127 SDLLKTSFRANFDHSK 142
D L F N D K
Sbjct: 601 LDDLNNKFLGNIDVKK 616
>gi|441147579|ref|ZP_20964568.1| DNA polymerase III subunit epsilon [Streptomyces rimosus subsp.
rimosus ATCC 10970]
gi|440620191|gb|ELQ83225.1| DNA polymerase III subunit epsilon [Streptomyces rimosus subsp.
rimosus ATCC 10970]
Length = 612
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 7/84 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+FVAHNA+ FD FLA EF+R M +P + R L TL L+R++ + L L
Sbjct: 99 VFVAHNAQ-FDYDFLAHEFARARMWLPVSQR-LCTLALSRQV----DPPTDDMKLGTLAA 152
Query: 92 YFGIPLEGSAHRAMSDVNSLASIL 115
++G+P + AH A+ D LA IL
Sbjct: 153 HYGVP-QQRAHDALDDTRVLAGIL 175
>gi|389817679|ref|ZP_10208272.1| ATP-dependent helicase dinG [Planococcus antarcticus DSM 14505]
gi|388464447|gb|EIM06778.1| ATP-dependent helicase dinG [Planococcus antarcticus DSM 14505]
Length = 920
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 58/118 (49%), Gaps = 15/118 (12%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWR--FLDTLPLARELMKQNGSVSSKTSLQA 88
AIFVAHN FD+PFL E R + W+ +DT+ L R + S LQ
Sbjct: 86 AIFVAHNTN-FDLPFLQAELKRSGLP---KWQGITMDTVELVRLMYPTAFSFK----LQD 137
Query: 89 LREYFGIPLEGSAHRAMSDVNSLASILERITSDLNF----TLSDLLKTSFRANFDHSK 142
+ GIPLE SAHRA D + A + R +DL TL+ L K SF+ D S+
Sbjct: 138 ITSELGIPLE-SAHRADDDAMATALLFLRAKADLESLPYDTLAFLHKRSFQLKSDLSR 194
>gi|58584800|ref|YP_198373.1| DNA polymerase III epsilon subunit [Wolbachia endosymbiont strain
TRS of Brugia malayi]
gi|58419116|gb|AAW71131.1| DNA polymerase III epsilon subunit [Wolbachia endosymbiont strain
TRS of Brugia malayi]
Length = 231
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
I + HNA FD+ FL E + + + + R LDTLPLAR+ V S SL AL +
Sbjct: 89 ILIIHNAE-FDIKFLNMELGKLNARLISSDRVLDTLPLARKKF-----VGSPASLSALCK 142
Query: 92 YFGIPLEG-SAHRAMSDVNSLASILERITSDLNFTLSD 128
F I LE H A++D LA + +T L L D
Sbjct: 143 RFDISLENRELHGALTDAGLLAKVYVELTGGLQTFLFD 180
>gi|58696733|ref|ZP_00372277.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
Drosophila simulans]
gi|58698126|ref|ZP_00373049.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
Drosophila ananassae]
gi|225629990|ref|YP_002726781.1| DNA polymerase III, epsilon subunit [Wolbachia sp. wRi]
gi|58535372|gb|EAL59448.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
Drosophila ananassae]
gi|58537085|gb|EAL60207.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
Drosophila simulans]
gi|225591971|gb|ACN94990.1| DNA polymerase III, epsilon subunit [Wolbachia sp. wRi]
Length = 231
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 48/98 (48%), Gaps = 7/98 (7%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
I V HNA FDV FL E S+ + + + R LDTLPLAR+ S SL AL +
Sbjct: 89 ILVIHNAE-FDVKFLNMELSKLNAGLISSDRVLDTLPLARKKF-----AGSPASLNALCK 142
Query: 92 YFGIPLEG-SAHRAMSDVNSLASILERITSDLNFTLSD 128
F I LE H A+ D LA + +T L L D
Sbjct: 143 RFDISLENRELHGALVDAQLLAKVYVELTGGLQTFLFD 180
>gi|225677154|ref|ZP_03788153.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
Muscidifurax uniraptor]
gi|225590821|gb|EEH12049.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
Muscidifurax uniraptor]
Length = 231
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 48/98 (48%), Gaps = 7/98 (7%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
I V HNA FDV FL E S+ + + + R LDTLPLAR+ S SL AL +
Sbjct: 89 ILVIHNAE-FDVKFLNMELSKLNAGLISSDRVLDTLPLARKKF-----AGSPASLNALCK 142
Query: 92 YFGIPLEG-SAHRAMSDVNSLASILERITSDLNFTLSD 128
F I LE H A+ D LA + +T L L D
Sbjct: 143 RFDISLENRELHGALVDAQLLAKVYVELTGGLQTFLFD 180
>gi|86741790|ref|YP_482190.1| hypothetical protein Francci3_3104 [Frankia sp. CcI3]
gi|86568652|gb|ABD12461.1| DNA polymerase III, epsilon subunit [Frankia sp. CcI3]
Length = 584
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 42/140 (30%), Positives = 68/140 (48%), Gaps = 16/140 (11%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
P + ++P +++ A+ VAHNA FD+ FL C +P W +LDTL
Sbjct: 93 PPVTQVLPTFLEFARG-------AVLVAHNAP-FDLGFLRAAVELCGYPVP-VWEYLDTL 143
Query: 68 PLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSD----VNSLASILERITSDLN 123
+AR ++ ++ S + L +L F P+E HRA++D V+ L + ER+ +
Sbjct: 144 RIARRVVTRDESPDCR--LTSLASLFRSPVE-PRHRALADARATVDVLHGLFERLGNAGV 200
Query: 124 FTLSDLLKTSFRANFDHSKK 143
TL DL S R + +K
Sbjct: 201 TTLEDLHDYSSRVSPAQRRK 220
>gi|407459193|ref|YP_006737296.1| exonuclease, DNA polymerase III subunit epsilon domain-containing
protein [Chlamydia psittaci M56]
gi|405786048|gb|AFS24793.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Chlamydia psittaci M56]
Length = 228
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 6/96 (6%)
Query: 28 GEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQ 87
G A+ VAHN FD P L KE R ++ P + + +D+L A++ K +LQ
Sbjct: 78 GNQAVLVAHNNDSFDFPLLEKECRRHALP-PLSLKTIDSLKWAQKYRPD----LPKHNLQ 132
Query: 88 ALREYFGIPLEGSAHRAMSDVNSLASILERITSDLN 123
LR+ +G E AHRA+ DV +L ++ + DL+
Sbjct: 133 YLRQVYGF-AENQAHRALDDVITLHNVFSALIGDLS 167
>gi|358461144|ref|ZP_09171314.1| DNA polymerase III, epsilon subunit [Frankia sp. CN3]
gi|357074015|gb|EHI83510.1| DNA polymerase III, epsilon subunit [Frankia sp. CN3]
Length = 595
Score = 50.4 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 43/140 (30%), Positives = 70/140 (50%), Gaps = 16/140 (11%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
P + +++P +++ A+ VAHNA FD+ FL R +P W LDT
Sbjct: 93 PALAEVLPAFLEFSRD-------AVLVAHNAP-FDLSFLKAACERVGYPVP-AWEHLDTA 143
Query: 68 PLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSD----VNSLASILERITSDLN 123
LAR ++ ++ S ++K L +L + FG E HRA+SD V+ L + ER+ +
Sbjct: 144 RLARRIVTRDESPNNK--LSSLAQLFGARTE-PCHRALSDARATVDVLHGLFERLGNLGV 200
Query: 124 FTLSDLLKTSFRANFDHSKK 143
TL D+ + S R + +K
Sbjct: 201 TTLEDVHEYSARVSPAQRRK 220
>gi|331269632|ref|YP_004396124.1| DNA polymerase III subunit alpha [Clostridium botulinum BKT015925]
gi|329126182|gb|AEB76127.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
botulinum BKT015925]
Length = 1443
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 58/115 (50%), Gaps = 11/115 (9%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
++ VAHNA FD+ F+ K + +NI N+ +DT+PLA+ L + + L +
Sbjct: 509 SVLVAHNAN-FDMSFIRKNCN--DLNIDINYTVMDTVPLAKFLFPE----LKRYKLNTIA 561
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILE---RITSDLNFTLSDLLKTSFRANFDHSK 142
++ G+ LE + HRA+ D + IL ++ D+ T D L F N D K
Sbjct: 562 KHLGVSLE-NHHRAVDDAKATGDILLCCFKLLDDMKITSLDSLNKEFLGNIDVKK 615
>gi|42520014|ref|NP_965929.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
Drosophila melanogaster]
gi|99034422|ref|ZP_01314429.1| hypothetical protein Wendoof_01000768 [Wolbachia endosymbiont of
Drosophila willistoni TSC#14030-0811.24]
gi|42409751|gb|AAS13863.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
Drosophila melanogaster]
Length = 231
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 48/98 (48%), Gaps = 7/98 (7%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
I V HNA FDV FL E S+ + + + R LDTLPLAR+ S SL AL +
Sbjct: 89 ILVIHNAE-FDVKFLNMELSKLNARLISSDRVLDTLPLARKKF-----AGSPASLNALCK 142
Query: 92 YFGIPLEG-SAHRAMSDVNSLASILERITSDLNFTLSD 128
F I LE H A+ D LA + +T L L D
Sbjct: 143 RFDISLENRELHGALVDAQLLAKVYVELTGGLQTFLFD 180
>gi|329942731|ref|ZP_08291510.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Chlamydophila psittaci Cal10]
gi|332287328|ref|YP_004422229.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci 6BC]
gi|384450477|ref|YP_005663077.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci 6BC]
gi|384451482|ref|YP_005664080.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci 01DC11]
gi|384452455|ref|YP_005665052.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci 08DC60]
gi|384453431|ref|YP_005666027.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci C19/98]
gi|384454410|ref|YP_005667005.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci 02DC15]
gi|392376569|ref|YP_004064347.1| DNA polymerase III, epsilon chain [Chlamydophila psittaci RD1]
gi|406592232|ref|YP_006739412.1| exonuclease, DNA polymerase III subunit epsilon domain-containing
protein [Chlamydia psittaci CP3]
gi|406594865|ref|YP_006741541.1| exonuclease, DNA polymerase III subunit epsilon domain-containing
protein [Chlamydia psittaci MN]
gi|407453903|ref|YP_006733011.1| exonuclease, DNA polymerase III subunit epsilon domain-containing
protein [Chlamydia psittaci 84/55]
gi|407455216|ref|YP_006734107.1| exonuclease, DNA polymerase III subunit epsilon domain-containing
protein [Chlamydia psittaci GR9]
gi|407456599|ref|YP_006735172.1| exonuclease, DNA polymerase III subunit epsilon domain-containing
protein [Chlamydia psittaci VS225]
gi|407457950|ref|YP_006736255.1| exonuclease, DNA polymerase III subunit epsilon domain-containing
protein [Chlamydia psittaci WS/RT/E30]
gi|407460568|ref|YP_006738343.1| exonuclease, DNA polymerase III subunit epsilon domain-containing
protein [Chlamydia psittaci WC]
gi|410858352|ref|YP_006974292.1| DNA polymerase III, epsilon chain [Chlamydia psittaci 01DC12]
gi|449071029|ref|YP_007438109.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci Mat116]
gi|313847912|emb|CBY16907.1| DNA polymerase III, epsilon chain [Chlamydophila psittaci RD1]
gi|325506611|gb|ADZ18249.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci 6BC]
gi|328814991|gb|EGF84980.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Chlamydophila psittaci Cal10]
gi|328914571|gb|AEB55404.1| DNA polymerase III, epsilon chain [Chlamydophila psittaci 6BC]
gi|334692212|gb|AEG85431.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci C19/98]
gi|334693192|gb|AEG86410.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci 01DC11]
gi|334694167|gb|AEG87384.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci 02DC15]
gi|334695144|gb|AEG88360.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci 08DC60]
gi|405780662|gb|AFS19412.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Chlamydia psittaci 84/55]
gi|405781759|gb|AFS20508.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Chlamydia psittaci GR9]
gi|405783297|gb|AFS22045.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Chlamydia psittaci MN]
gi|405783860|gb|AFS22607.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Chlamydia psittaci VS225]
gi|405785585|gb|AFS24331.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Chlamydia psittaci WS/RT/E30]
gi|405787488|gb|AFS26232.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Chlamydia psittaci WC]
gi|405788104|gb|AFS26847.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Chlamydia psittaci CP3]
gi|410811247|emb|CCO01893.1| DNA polymerase III, epsilon chain [Chlamydia psittaci 01DC12]
gi|449039537|gb|AGE74961.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci Mat116]
Length = 228
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 6/96 (6%)
Query: 28 GEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQ 87
G A+ VAHN FD P L KE R ++ P + + +D+L A++ K +LQ
Sbjct: 78 GNEAVLVAHNNDSFDFPLLEKECRRHALP-PLSLKTIDSLKWAQKYRPD----LPKHNLQ 132
Query: 88 ALREYFGIPLEGSAHRAMSDVNSLASILERITSDLN 123
LR+ +G E AHRA+ DV +L ++ + DL+
Sbjct: 133 YLRQVYGF-AENQAHRALDDVITLHNVFSALIGDLS 167
>gi|406593321|ref|YP_006740500.1| exonuclease, DNA polymerase III subunit epsilon domain-containing
protein [Chlamydia psittaci NJ1]
gi|405789193|gb|AFS27935.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Chlamydia psittaci NJ1]
Length = 228
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 6/96 (6%)
Query: 28 GEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQ 87
G A+ VAHN FD P L KE R ++ P + + +D+L A++ K +LQ
Sbjct: 78 GNEAVLVAHNNDSFDFPLLEKECRRHALP-PLSLKTIDSLKWAQKYRPD----LPKHNLQ 132
Query: 88 ALREYFGIPLEGSAHRAMSDVNSLASILERITSDLN 123
LR+ +G E AHRA+ DV +L ++ + DL+
Sbjct: 133 YLRQVYGF-AENQAHRALDDVITLHNVFSALIGDLS 167
>gi|62185003|ref|YP_219788.1| DNA polymerase III subunit epsilon [Chlamydophila abortus S26/3]
gi|424825056|ref|ZP_18250043.1| DNA polymerase III, epsilon chain [Chlamydophila abortus LLG]
gi|62148070|emb|CAH63824.1| DNA polymerase III, epsilon chain [Chlamydophila abortus S26/3]
gi|333410155|gb|EGK69142.1| DNA polymerase III, epsilon chain [Chlamydophila abortus LLG]
Length = 228
Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 6/96 (6%)
Query: 28 GEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQ 87
G A+ VAHN FD P + KE R ++ P + + +D+L A++ K +LQ
Sbjct: 78 GNDAVLVAHNNDSFDFPLMEKECRRHALE-PLSLKTIDSLKWAQKYRPD----LPKHNLQ 132
Query: 88 ALREYFGIPLEGSAHRAMSDVNSLASILERITSDLN 123
LR+ +G E AHRA+ DV +L ++ + DL+
Sbjct: 133 YLRQVYGF-AENQAHRALDDVITLHNVFSALIGDLS 167
>gi|15604982|ref|NP_219766.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
D/UW-3/CX]
gi|76788983|ref|YP_328069.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis A/HAR-13]
gi|166154472|ref|YP_001654590.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 434/Bu]
gi|166155347|ref|YP_001653602.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
L2b/UCH-1/proctitis]
gi|237802684|ref|YP_002887878.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
B/Jali20/OT]
gi|237804606|ref|YP_002888760.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
B/TZ1A828/OT]
gi|255311062|ref|ZP_05353632.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 6276]
gi|255317363|ref|ZP_05358609.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 6276s]
gi|255348621|ref|ZP_05380628.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 70]
gi|255503161|ref|ZP_05381551.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 70s]
gi|255506839|ref|ZP_05382478.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis D(s)2923]
gi|301335732|ref|ZP_07223976.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis L2tet1]
gi|339625921|ref|YP_004717400.1| exonuclease, DNA polymerase III subunit epsilon family
domain-containing protein [Chlamydia trachomatis L2c]
gi|376282265|ref|YP_005156091.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis A2497]
gi|385239772|ref|YP_005807614.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/9768]
gi|385240694|ref|YP_005808535.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/11222]
gi|385241627|ref|YP_005809467.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis E/11023]
gi|385242548|ref|YP_005810387.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/9301]
gi|385243468|ref|YP_005811314.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis D-EC]
gi|385244348|ref|YP_005812192.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis D-LC]
gi|385245234|ref|YP_005814057.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis E/150]
gi|385246158|ref|YP_005814980.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/11074]
gi|385269936|ref|YP_005813096.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis A2497]
gi|386262612|ref|YP_005815891.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis Sweden2]
gi|389857951|ref|YP_006360193.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis F/SW4]
gi|389858827|ref|YP_006361068.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis E/SW3]
gi|389859703|ref|YP_006361943.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis F/SW5]
gi|3328673|gb|AAC67854.1| DNA Pol III Epsilon Chain [Chlamydia trachomatis D/UW-3/CX]
gi|76167513|gb|AAX50521.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis A/HAR-13]
gi|165930460|emb|CAP03953.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis 434/Bu]
gi|165931335|emb|CAP06907.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis
L2b/UCH-1/proctitis]
gi|231272906|emb|CAX09817.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis
B/TZ1A828/OT]
gi|231273918|emb|CAX10710.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis
B/Jali20/OT]
gi|289525300|emb|CBJ14776.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis Sweden2]
gi|296434850|gb|ADH17028.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis E/150]
gi|296435777|gb|ADH17951.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/9768]
gi|296436702|gb|ADH18872.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/11222]
gi|296437637|gb|ADH19798.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/11074]
gi|296438570|gb|ADH20723.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis E/11023]
gi|297140136|gb|ADH96894.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/9301]
gi|297748391|gb|ADI50937.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis D-EC]
gi|297749271|gb|ADI51949.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis D-LC]
gi|339460569|gb|AEJ77072.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Chlamydia trachomatis L2c]
gi|347975076|gb|AEP35097.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis A2497]
gi|371908295|emb|CAX08923.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis A2497]
gi|380249023|emb|CCE14314.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis F/SW5]
gi|380249898|emb|CCE13425.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis F/SW4]
gi|380250776|emb|CCE12536.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis E/SW3]
gi|438690184|emb|CCP49441.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis A/7249]
gi|438691268|emb|CCP48542.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis A/5291]
gi|438692641|emb|CCP47643.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis A/363]
gi|440525174|emb|CCP50425.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
K/SotonK1]
gi|440526062|emb|CCP51546.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
L2b/8200/07]
gi|440526957|emb|CCP52441.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
D/SotonD1]
gi|440527850|emb|CCP53334.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
D/SotonD5]
gi|440528741|emb|CCP54225.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
D/SotonD6]
gi|440529631|emb|CCP55115.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
E/SotonE4]
gi|440530530|emb|CCP56014.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
E/SotonE8]
gi|440531422|emb|CCP56932.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
F/SotonF3]
gi|440532314|emb|CCP57824.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
G/SotonG1]
gi|440533208|emb|CCP58718.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
Ia/SotonIa1]
gi|440534102|emb|CCP59612.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
Ia/SotonIa3]
gi|440534997|emb|CCP60507.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis E/Bour]
gi|440535887|emb|CCP61400.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis L2b/795]
gi|440536778|emb|CCP62292.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
L1/440/LN]
gi|440537669|emb|CCP63183.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
L1/1322/p2]
gi|440538559|emb|CCP64073.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis L1/115]
gi|440539447|emb|CCP64961.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis L1/224]
gi|440540338|emb|CCP65852.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
L2/25667R]
gi|440541227|emb|CCP66741.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
L3/404/LN]
gi|440542115|emb|CCP67629.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
L2b/UCH-2]
gi|440543006|emb|CCP68520.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
L2b/Canada2]
gi|440543897|emb|CCP69411.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis L2b/LST]
gi|440544787|emb|CCP70301.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis L2b/Ams1]
gi|440545677|emb|CCP71191.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
L2b/CV204]
gi|440913939|emb|CCP90356.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis L2b/Ams2]
gi|440914829|emb|CCP91246.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis L2b/Ams3]
gi|440915721|emb|CCP92138.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
L2b/Canada1]
gi|440916615|emb|CCP93032.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis L2b/Ams4]
gi|440917505|emb|CCP93922.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis L2b/Ams5]
Length = 232
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 6/96 (6%)
Query: 28 GEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQ 87
G I VAHN FD P L +E R ++ P R +D+L A K+ + + SLQ
Sbjct: 78 GTDNILVAHNNNAFDYPLLVRECRRHGLSEP-QLRTIDSLKWA----KKYRTDLPQHSLQ 132
Query: 88 ALREYFGIPLEGSAHRAMSDVNSLASILERITSDLN 123
LR+ +G E AHRA+ DV +L + + DL+
Sbjct: 133 YLRQVYGFE-ENQAHRALDDVITLYRVFSALVGDLS 167
>gi|429744041|ref|ZP_19277561.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
sp. oral taxon 020 str. F0370]
gi|429163924|gb|EKY06103.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
sp. oral taxon 020 str. F0370]
Length = 461
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 37/90 (41%), Positives = 51/90 (56%), Gaps = 12/90 (13%)
Query: 35 AHNARRFDVPFLAKEFSRCSMN--IPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREY 92
AHN++ FD FL +EF+RC ++ +P L T+ L+R L Q K SL+++ E
Sbjct: 103 AHNSK-FDYTFLRREFARCGLHFAVPT----LCTVQLSRRLYPQ----FFKHSLESIIER 153
Query: 93 FGIPLEGSAHRAMSDVNSLASILERITSDL 122
GI HRAMSDV +LA LE +DL
Sbjct: 154 HGIA-AAPRHRAMSDVLALADYLETAAADL 182
>gi|386346969|ref|YP_006045218.1| DNA polymerase III subunit epsilon [Spirochaeta thermophila DSM
6578]
gi|339411936|gb|AEJ61501.1| DNA polymerase III, epsilon subunit [Spirochaeta thermophila DSM
6578]
Length = 198
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 64/127 (50%), Gaps = 18/127 (14%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
P + ++P++ +V + L VAHNA FD+ FL E++RC P +R +DT
Sbjct: 84 PPLPSVLPMLESFVGTHL-------LVAHNAP-FDLSFLRIEYARCGRPYP-GFRAIDTR 134
Query: 68 PLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLA----SILERITSDLN 123
LAR ++ G + SL +L IPL+ HRA+SD + ++ ER + + +
Sbjct: 135 LLARSVLPHLG----RYSLASLTRALDIPLQ-QHHRALSDAWACGDLFYALAERSSGEGS 189
Query: 124 FTLSDLL 130
L +L
Sbjct: 190 LPLEGIL 196
>gi|383640132|ref|ZP_09952538.1| DNA polymerase III, epsilon subunit [Sphingomonas elodea ATCC
31461]
Length = 236
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 56/121 (46%), Gaps = 14/121 (11%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
P ED++ ++ ++ + VAHNA FD FL E RCS D R +DTL
Sbjct: 68 PLFEDVVEDLLAFIGD-------SPMVAHNAG-FDFGFLNGELGRCSRPPVDLSRMVDTL 119
Query: 68 PLARELMKQNGSVSSKTSLQALREYFGIPLEG-SAHRAMSDVNSLASILERITSDLNFTL 126
LAR K G +K +L AL +GI L + H A+ D LA + +T TL
Sbjct: 120 VLAR--TKHPG---AKHTLDALCSRYGIDLSARTLHGALLDAQLLAQVYVELTGGRQITL 174
Query: 127 S 127
Sbjct: 175 G 175
>gi|334143935|ref|YP_004537091.1| DNA polymerase III subunit epsilon [Thioalkalimicrobium cyclicum
ALM1]
gi|333964846|gb|AEG31612.1| DNA polymerase III, epsilon subunit [Thioalkalimicrobium cyclicum
ALM1]
Length = 490
Score = 48.9 bits (115), Expect = 6e-04, Method: Composition-based stats.
Identities = 39/119 (32%), Positives = 65/119 (54%), Gaps = 18/119 (15%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWR--FLDTLPLARELMKQNGSVSSKTSLQAL 89
+FVAHNAR FD F+ +F R ++ WR L T+ L+R+L ++ + L L
Sbjct: 100 VFVAHNAR-FDYGFIKHQFKRIGID----WRATTLCTVKLSRQLFPEH----KRHGLDHL 150
Query: 90 REYFGIPLEGSAHRAMSDVNSLASILERITSDLNFT-----LSDLL-KTSFRANFDHSK 142
+ +P + HRAM DV+ +A+ L ++T +++ L++LL + S AN D S+
Sbjct: 151 VTRYALP-QVDRHRAMGDVDLVAAFLAQLTHEVSADRIWSLLAELLAQPSLPANLDPSE 208
>gi|219847899|ref|YP_002462332.1| DNA polymerase III subunit epsilon [Chloroflexus aggregans DSM
9485]
gi|219542158|gb|ACL23896.1| DNA polymerase III, epsilon subunit [Chloroflexus aggregans DSM
9485]
Length = 280
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 49/92 (53%), Gaps = 8/92 (8%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
A+ VAHN FD FL E +R P LDTL LAR L + GS+S L AL
Sbjct: 95 AVRVAHNLP-FDESFLNMELARAGYP-PLTGPALDTLELARRLGIRRGSLS----LGALA 148
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILERITSDL 122
FG+P HRAM DV +L ++ +R+ + L
Sbjct: 149 TSFGLPT--PTHRAMDDVLTLHALFDRLVAKL 178
>gi|357389587|ref|YP_004904426.1| putative exonuclease [Kitasatospora setae KM-6054]
gi|311896062|dbj|BAJ28470.1| putative exonuclease [Kitasatospora setae KM-6054]
Length = 617
Score = 48.5 bits (114), Expect = 8e-04, Method: Composition-based stats.
Identities = 33/84 (39%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+ VAHNA+ FD FLA EF+R +++P R L TL L R + + SL +L
Sbjct: 98 VMVAHNAQ-FDYDFLAHEFARARLHLPVARR-LCTLALNRRVEPPVAGL----SLASLAA 151
Query: 92 YFGIPLEGSAHRAMSDVNSLASIL 115
Y+G+P + AH A+ D LA I
Sbjct: 152 YYGVP-QTRAHDALDDTRVLAGIF 174
>gi|124485750|ref|YP_001030366.1| hypothetical protein Mlab_0928 [Methanocorpusculum labreanum Z]
gi|124363291|gb|ABN07099.1| Exonuclease, RNase T and DNA polymerase III [Methanocorpusculum
labreanum Z]
Length = 228
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 8/97 (8%)
Query: 27 PGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSL 86
PG + + V HNA+ FD+ F+ + SR P+ W +DTL + R+ Q +S S
Sbjct: 83 PGRV-LLVTHNAQ-FDLRFIQEMLSRHRYVFPNGWGVIDTLTVFRDRKPQPHRLSDAIS- 139
Query: 87 QALREYFGIPLEGSAHRAMSDVNSLASILERITSDLN 123
Y+G+ ++HRA+ DV +L ++ + + + N
Sbjct: 140 -----YYGLDGVKNSHRAIDDVVALCAVFDAMCQEQN 171
>gi|307718875|ref|YP_003874407.1| hypothetical protein STHERM_c11930 [Spirochaeta thermophila DSM
6192]
gi|306532600|gb|ADN02134.1| hypothetical protein STHERM_c11930 [Spirochaeta thermophila DSM
6192]
Length = 198
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 63/127 (49%), Gaps = 18/127 (14%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
P + ++P++ +V + L VAHNA FD+ FL E++RC P +R +DT
Sbjct: 84 PPLPSVLPMLESFVGTHL-------LVAHNAP-FDLSFLRMEYARCGRPYP-GFRAIDTR 134
Query: 68 PLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLA----SILERITSDLN 123
LAR ++ G + SL +L IPL+ HRA+SD + ++ ER + +
Sbjct: 135 LLARSVLPHLG----RYSLASLTRALDIPLQ-HHHRALSDAWACGDLFYALAERSSGEGA 189
Query: 124 FTLSDLL 130
L +L
Sbjct: 190 LPLDGIL 196
>gi|294629410|ref|ZP_06707970.1| DNA polymerase III, epsilon subunit [Streptomyces sp. e14]
gi|292832743|gb|EFF91092.1| DNA polymerase III, epsilon subunit [Streptomyces sp. e14]
Length = 653
Score = 48.5 bits (114), Expect = 9e-04, Method: Composition-based stats.
Identities = 34/90 (37%), Positives = 49/90 (54%), Gaps = 7/90 (7%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+ VAHNA+ FD FLA EF+R + +P N R L TL L R + ++ SL +L
Sbjct: 98 VMVAHNAQ-FDYDFLAHEFARARLCLPVNQR-LCTLALNRRVEPP----AADLSLASLAA 151
Query: 92 YFGIPLEGSAHRAMSDVNSLASILERITSD 121
++G+P + AH A+ D LA I S+
Sbjct: 152 HYGVP-QTRAHDALDDTRVLAGIFRSSLSE 180
>gi|119026003|ref|YP_909848.1| putative DNA polymerase III subunit epsilon [Bifidobacterium
adolescentis ATCC 15703]
gi|118765587|dbj|BAF39766.1| putative DNA polymerase III epsilon subunit [Bifidobacterium
adolescentis ATCC 15703]
Length = 207
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 47/88 (53%), Gaps = 10/88 (11%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIP-DNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
+FVAHN FD FL E+SR +IP D L T+ L+R L+ + L
Sbjct: 86 VFVAHNVS-FDSRFLLAEYSRMGASIPVDQSTMLCTMKLSRSLI-------GRGKLADCC 137
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILERI 118
EYFGI E AH A+SD ++ A +L R+
Sbjct: 138 EYFGIANE-DAHSALSDAHATAILLGRL 164
>gi|433546013|ref|ZP_20502351.1| DNA polymerase III alpha subunit [Brevibacillus agri BAB-2500]
gi|432182629|gb|ELK40192.1| DNA polymerase III alpha subunit [Brevibacillus agri BAB-2500]
Length = 1464
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 61/119 (51%), Gaps = 20/119 (16%)
Query: 9 RMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLP 68
R +D + +V++ G A+ VAHNA FD F+ R M P N FLDTLP
Sbjct: 511 RGKDTLDVVLRKFKEFTGD---AVLVAHNAE-FDKAFINACAKRIGME-PWNNPFLDTLP 565
Query: 69 LARELMK-----QNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITSDL 122
LAR + K + GS++ K +++ + +AHRA+ D +LA + +++ D+
Sbjct: 566 LARMMYKGMRNYRLGSLAKKFNVELI----------NAHRALDDTVALAHVFQQMLKDI 614
>gi|399055572|ref|ZP_10743267.1| DNA polymerase III, alpha chain [Brevibacillus sp. CF112]
gi|398046781|gb|EJL39365.1| DNA polymerase III, alpha chain [Brevibacillus sp. CF112]
Length = 1434
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 61/119 (51%), Gaps = 20/119 (16%)
Query: 9 RMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLP 68
R +D + +V++ G A+ VAHNA FD F+ R M P N FLDTLP
Sbjct: 481 RGKDTLDVVLRKFKEFTGD---AVLVAHNAE-FDKAFINACAKRIGME-PWNNPFLDTLP 535
Query: 69 LARELMK-----QNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITSDL 122
LAR + K + GS++ K +++ + +AHRA+ D +LA + +++ D+
Sbjct: 536 LARMMYKGMRNYRLGSLAKKFNVELI----------NAHRALDDTVALAHVFQQMLKDI 584
>gi|403383163|ref|ZP_10925220.1| ATP-dependent helicase dinG [Kurthia sp. JC30]
Length = 925
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 45/117 (38%), Positives = 56/117 (47%), Gaps = 17/117 (14%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNW--RFLDTLPLARELMKQNGSVSSKTSLQAL 89
IFVAHN FD+PFL EF+RC + W + +DT+ LA+ L S LQ L
Sbjct: 87 IFVAHNID-FDLPFLQSEFARCGL---PKWQGKSMDTVELAKILF----PTSYSYKLQDL 138
Query: 90 REYFGIPLEGSAHRAMSDVNSLASILERITSD-----LNFTLSDLLKTSFRANFDHS 141
GI L AHRA D + A +L+ LN L L K SF+A D S
Sbjct: 139 ALELGI-LHTKAHRADDDALATAYLLKACYDKMMRLPLN-VLEHLHKRSFKAKTDMS 193
>gi|269125769|ref|YP_003299139.1| DNA polymerase III subunit epsilon [Thermomonospora curvata DSM
43183]
gi|268310727|gb|ACY97101.1| DNA polymerase III, epsilon subunit [Thermomonospora curvata DSM
43183]
Length = 328
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 46/90 (51%), Gaps = 7/90 (7%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+ VAHNA FD FLA EF R +++P R L TL L R + G + L L
Sbjct: 95 VMVAHNAA-FDYAFLAHEFGRAGLHLPVEQR-LCTLALGRRI----GLPTPDLRLSTLAA 148
Query: 92 YFGIPLEGSAHRAMSDVNSLASILERITSD 121
++G+P + AH A+ D LA +L +D
Sbjct: 149 HYGVP-QHRAHDALDDARVLAGVLRASLAD 177
>gi|386773578|ref|ZP_10095956.1| hypothetical protein BparL_07347 [Brachybacterium paraconglomeratum
LC44]
Length = 554
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 42/133 (31%), Positives = 62/133 (46%), Gaps = 15/133 (11%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
P + ++P+ + +V G A VAHNAR FD+ FL + C++ P LDTL
Sbjct: 84 PSIRTVLPMFLDFV------GPEAALVAHNAR-FDIGFLRARAAECALEWPAP-TVLDTL 135
Query: 68 PLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITSDLN---- 123
LAR + +++ K L L + G + HRA+SD + +L I + L
Sbjct: 136 ALARTVFRRDEVRDHK--LSTLAAHVGAAVTPD-HRALSDARATVDVLHAIIARLGPTGA 192
Query: 124 FTLSDLLKTSFRA 136
TL DL RA
Sbjct: 193 STLEDLGTAHRRA 205
>gi|345010759|ref|YP_004813113.1| DNA polymerase III subunit epsilon [Streptomyces violaceusniger Tu
4113]
gi|344037108|gb|AEM82833.1| DNA polymerase III, epsilon subunit [Streptomyces violaceusniger Tu
4113]
Length = 638
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 34/84 (40%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+ VAHNA+ FD FLA EF+R +P + R L TL L R++ G + L L
Sbjct: 99 VLVAHNAQ-FDYDFLAHEFARARTWLPVSQR-LCTLALNRQVDPPTGDM----KLGTLAA 152
Query: 92 YFGIPLEGSAHRAMSDVNSLASIL 115
++GIP + AH A+ D LA IL
Sbjct: 153 HYGIP-QQRAHDALDDTRVLAGIL 175
>gi|51892851|ref|YP_075542.1| ATP-dependent DNA helicase [Symbiobacterium thermophilum IAM 14863]
gi|51856540|dbj|BAD40698.1| ATP-dependent DNA helicase [Symbiobacterium thermophilum IAM 14863]
Length = 958
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 36/103 (34%), Positives = 55/103 (53%), Gaps = 15/103 (14%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
PR+E+++P + ++ G++ + VAHNA FDV FL F+R ++P NW + DT
Sbjct: 69 PRIEEVVPDLASFL------GDLPL-VAHNAP-FDVAFLQAAFARAGRSLP-NWSY-DTA 118
Query: 68 PLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNS 110
LAR + ++ L L E G+PLE HRA D +
Sbjct: 119 ELARVAL----PLARNHRLATLAELLGLPLE-HHHRAEDDARA 156
>gi|329929349|ref|ZP_08283102.1| DNA polymerase III, alpha subunit, Gram-positive type
[Paenibacillus sp. HGF5]
gi|328936718|gb|EGG33161.1| DNA polymerase III, alpha subunit, Gram-positive type
[Paenibacillus sp. HGF5]
Length = 1438
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 66/124 (53%), Gaps = 11/124 (8%)
Query: 2 VNRSYVPRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNW 61
+N V +L P++ ++V +G G + VAHNAR FD+ F+ M+ +N
Sbjct: 475 INDDMVKDAPELEPVLKEFVEF-VGDG---VLVAHNAR-FDMGFIQAALKNAGMDTLEN- 528
Query: 62 RFLDTLPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITSD 121
+LDTL LAR + G + + L L + + + LE S HRA+ D +LA IL + SD
Sbjct: 529 PYLDTLELAR--LVHPGLKNHR--LNTLADKYKVLLE-SHHRAIDDTIALAGILNGLLSD 583
Query: 122 LNFT 125
++ T
Sbjct: 584 VDKT 587
>gi|347755338|ref|YP_004862902.1| DNA polymerase III subunit epsilon family exonuclease [Candidatus
Chloracidobacterium thermophilum B]
gi|347587856|gb|AEP12386.1| exonuclease, DNA polymerase III, epsilon subunit family [Candidatus
Chloracidobacterium thermophilum B]
Length = 1097
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 4/90 (4%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+ VAHN FD L + F + + F DTL AR+L + S+ + L+ L +
Sbjct: 785 LLVAHNGLAFDFKVLRRRFRDVGLKF--DHPFFDTLLFARQLYADHPSIK-RCRLEDLAQ 841
Query: 92 YFGIPLEGSAHRAMSDVNSLASILERITSD 121
GI + G+AHRA+ D +LA++ + + D
Sbjct: 842 AHGIEI-GTAHRALDDTRTLAAVFQAMQRD 870
>gi|261407941|ref|YP_003244182.1| DNA polymerase III subunit alpha [Paenibacillus sp. Y412MC10]
gi|261284404|gb|ACX66375.1| DNA polymerase III, alpha subunit [Paenibacillus sp. Y412MC10]
Length = 1438
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 66/124 (53%), Gaps = 11/124 (8%)
Query: 2 VNRSYVPRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNW 61
+N V +L P++ ++V +G G + VAHNAR FD+ F+ M+ +N
Sbjct: 475 INDDMVKDAPELEPVLKEFVEF-VGDG---VLVAHNAR-FDMGFIQAALKNAGMDTLEN- 528
Query: 62 RFLDTLPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITSD 121
+LDTL LAR + G + + L L + + + LE S HRA+ D +LA IL + SD
Sbjct: 529 PYLDTLELAR--LVHPGLKNHR--LNTLADKYKVLLE-SHHRAIDDTIALAGILNGLLSD 583
Query: 122 LNFT 125
++ T
Sbjct: 584 VDKT 587
>gi|15835150|ref|NP_296909.1| DNA polymerase III subunit epsilon [Chlamydia muridarum Nigg]
gi|270285322|ref|ZP_06194716.1| DNA polymerase III subunit epsilon [Chlamydia muridarum Nigg]
gi|270289339|ref|ZP_06195641.1| DNA polymerase III subunit epsilon [Chlamydia muridarum Weiss]
gi|301336719|ref|ZP_07224921.1| DNA polymerase III subunit epsilon [Chlamydia muridarum MopnTet14]
gi|8163241|gb|AAF73567.1| DNA polymerase III, epsilon subunit, putative [Chlamydia muridarum
Nigg]
Length = 232
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 6/96 (6%)
Query: 28 GEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQ 87
G I VAHN FD P L +E R + P R +D+L A K+ + + SLQ
Sbjct: 78 GTDNILVAHNNNAFDYPLLLRECRRHGLPEP-QLRTIDSLKWA----KKYRTDLPQHSLQ 132
Query: 88 ALREYFGIPLEGSAHRAMSDVNSLASILERITSDLN 123
LR+ +G E +AHRA+ DV +L + + DL+
Sbjct: 133 YLRQVYGFE-ENNAHRALDDVITLHRVFSVLVGDLS 167
>gi|383828415|ref|ZP_09983504.1| exonuclease, DNA polymerase III, epsilon subunit family
[Saccharomonospora xinjiangensis XJ-54]
gi|383461068|gb|EID53158.1| exonuclease, DNA polymerase III, epsilon subunit family
[Saccharomonospora xinjiangensis XJ-54]
Length = 569
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 41/129 (31%), Positives = 63/129 (48%), Gaps = 14/129 (10%)
Query: 6 YVPRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLD 65
+ PR+E+++P +++ + A+ VAHNA FD FL R P N L
Sbjct: 78 HAPRIEEVLPSFLEFADG-------AVLVAHNAG-FDTSFLKAACGRHGYAWP-NPTVLC 128
Query: 66 TLPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSD----VNSLASILERITSD 121
TL LAR ++++ + L AL FG + HRA+ D V+ L +LER+ S
Sbjct: 129 TLKLARRVLRREHTPRRSHRLSALAALFGSATTPN-HRALDDARACVDVLHGLLERVGSL 187
Query: 122 LNFTLSDLL 130
+L +LL
Sbjct: 188 GVQSLEELL 196
>gi|121607002|ref|YP_984331.1| DNA-directed DNA polymerase [Polaromonas naphthalenivorans CJ2]
gi|120595971|gb|ABM39410.1| DNA-directed DNA polymerase [Polaromonas naphthalenivorans CJ2]
Length = 203
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 45/92 (48%), Gaps = 7/92 (7%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
A VAHNA FD F E R + P F+ TL L+R L Q + L +L
Sbjct: 84 APLVAHNAA-FDRKFWQAELDRAGLAAPQP--FICTLLLSRRLYPQ----APNHKLGSLV 136
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILERITSDL 122
++ G+P G AHRA++D +L +I DL
Sbjct: 137 DFHGLPRTGQAHRALADAEMAVELLGQIQHDL 168
>gi|425748583|ref|ZP_18866569.1| exonuclease [Acinetobacter baumannii WC-348]
gi|425491043|gb|EKU57332.1| exonuclease [Acinetobacter baumannii WC-348]
Length = 208
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 60/122 (49%), Gaps = 15/122 (12%)
Query: 1 MVNRSYVPRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDN 60
MVN + P++E +IP +++++ + P VAHNAR FD FL E +R + P +
Sbjct: 65 MVN--HAPQVEKVIPHLLEFIGT--DP-----LVAHNAR-FDEKFLLAESARLELQ-PAH 113
Query: 61 WRFLDTLPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITS 120
+ +L LAR ++ S L A+ + GI G+AHRA +D + +
Sbjct: 114 RGLICSLKLARRILPHQPSYR----LGAIADSIGIQFRGTAHRAEADAEVTVQLFNHLCQ 169
Query: 121 DL 122
L
Sbjct: 170 YL 171
>gi|163848613|ref|YP_001636657.1| DNA polymerase III subunit epsilon [Chloroflexus aurantiacus
J-10-fl]
gi|222526548|ref|YP_002571019.1| DNA polymerase III subunit epsilon [Chloroflexus sp. Y-400-fl]
gi|163669902|gb|ABY36268.1| DNA polymerase III, epsilon subunit [Chloroflexus aurantiacus
J-10-fl]
gi|222450427|gb|ACM54693.1| DNA polymerase III, epsilon subunit [Chloroflexus sp. Y-400-fl]
Length = 278
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 61/128 (47%), Gaps = 19/128 (14%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
P D+ P V++ + A+ +AHN FD FL E R P LDTL
Sbjct: 79 PLFTDIAPQVVQLSQN-------AVRIAHNLP-FDESFLNMELCRAGYP-PFTGPALDTL 129
Query: 68 PLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITSDL----N 123
LAR L + GS+ SL AL FG+P HRAM DV +L ++ + +++
Sbjct: 130 ELARRLGIRRGSL----SLAALATTFGLP--APTHRAMDDVLTLRALFDHFVNEMISFGI 183
Query: 124 FTLSDLLK 131
TL D+L+
Sbjct: 184 ITLGDVLR 191
>gi|402497000|ref|YP_006556260.1| DNA polymerase III subunit epsilon [Wolbachia endosymbiont of
Onchocerca ochengi]
gi|398650273|emb|CCF78443.1| DNA polymerase III epsilon subunit [Wolbachia endosymbiont of
Onchocerca ochengi]
Length = 231
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 48/98 (48%), Gaps = 7/98 (7%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
I + HNA FD+ FL E S+ + + + R LDTLPLAR+ S SL AL +
Sbjct: 89 ILIIHNAE-FDIKFLNMELSKLNTGLISSDRVLDTLPLARKKF-----AGSPASLSALCK 142
Query: 92 YFGIPLEG-SAHRAMSDVNSLASILERITSDLNFTLSD 128
F I L+ H A+ D LA + +T L L D
Sbjct: 143 RFNISLKDRELHGALIDAQLLAKVYVELTGGLQTFLFD 180
>gi|194246813|ref|YP_002004452.1| DNA polymerase III subunit alpha [Candidatus Phytoplasma mali]
gi|193807170|emb|CAP18609.1| DNA polymerase III, alpha subunit [Candidatus Phytoplasma mali]
Length = 1449
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 39/120 (32%), Positives = 65/120 (54%), Gaps = 16/120 (13%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
P + ++P +K+ E +I +AHN FD+ FL + ++ +N+ N F+DTL
Sbjct: 472 PLIATILPKFLKFC-------ENSILIAHNIS-FDMGFLVNQ-TKKHLNLKLNLPFIDTL 522
Query: 68 PLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITSDLNFTLS 127
LAR + N +L++L +YF I E + HRAMSDV +I +++ LN+ L+
Sbjct: 523 NLARYCLDSN---LRYFNLKSLAKYFKISFE-NHHRAMSDVLITKTIFQQL---LNYLLT 575
>gi|71907013|ref|YP_284600.1| DNA polymerase III subunit epsilon [Dechloromonas aromatica RCB]
gi|71846634|gb|AAZ46130.1| DNA polymerase III, epsilon subunit [Dechloromonas aromatica RCB]
Length = 204
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 7/90 (7%)
Query: 33 FVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREY 92
VAHNA FD F E +R +N+ F +L LAR LM ++ L AL E+
Sbjct: 86 LVAHNAS-FDCKFWDAEVAR--INLQRCQEFACSLLLARRLM----PLAPSHKLGALIEF 138
Query: 93 FGIPLEGSAHRAMSDVNSLASILERITSDL 122
+P+ G AHRA++D AS+L + +L
Sbjct: 139 AKLPVAGRAHRALADAEMAASLLAYLAGEL 168
>gi|350570854|ref|ZP_08939198.1| DNA polymerase III, epsilon subunit [Neisseria wadsworthii 9715]
gi|349794374|gb|EGZ48190.1| DNA polymerase III, epsilon subunit [Neisseria wadsworthii 9715]
Length = 463
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 35/87 (40%), Positives = 49/87 (56%), Gaps = 8/87 (9%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
A+ VAHN+R FD FL EF R ++ L T+ L+R+L Q K +L ++
Sbjct: 100 AVVVAHNSR-FDYTFLRHEFQRAGIDFAAP--ALCTVQLSRKLYPQ----FHKHNLDSII 152
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILER 117
E GI +E HRAM+DV +LA LE+
Sbjct: 153 ERCGIVME-QRHRAMADVLALAEFLEK 178
>gi|330444105|ref|YP_004377091.1| DNA polymerase III subunit epsilon [Chlamydophila pecorum E58]
gi|328807215|gb|AEB41388.1| DNA polymerase III epsilon chain [Chlamydophila pecorum E58]
Length = 249
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 41 FDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREYFGIPLEGS 100
FD+ LA+E R P + +DTL LA+E S SL++L +F +P +G+
Sbjct: 98 FDLQVLAQEVERLGETFPTKYHVIDTLRLAKEY-----GDSPNNSLESLAVHFNVPYDGN 152
Query: 101 AHRAMSDVNSLASILERIT 119
HRAM DV SI + +
Sbjct: 153 -HRAMKDVEINISIFKHLC 170
>gi|455647715|gb|EMF26647.1| DNA polymerase III subunit epsilon [Streptomyces gancidicus BKS
13-15]
Length = 641
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+ VAHNA+ FD FLA EF+R M +P + R L TL L R++ + L L
Sbjct: 103 VLVAHNAQ-FDYDFLAHEFARARMWLPVSQR-LCTLALNRQV----DPPTDDMKLGTLAA 156
Query: 92 YFGIPLEGSAHRAMSDVNSLASIL 115
++G+P + AH A+ D LA +L
Sbjct: 157 HYGVP-QQRAHDALDDTRVLAGVL 179
>gi|319938082|ref|ZP_08012482.1| hypothetical protein HMPREF9488_03318 [Coprobacillus sp. 29_1]
gi|319806988|gb|EFW03627.1| hypothetical protein HMPREF9488_03318 [Coprobacillus sp. 29_1]
Length = 221
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 59/120 (49%), Gaps = 9/120 (7%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
P D++ +++ NS+ E ++ V N FD L R +N P R LDTL
Sbjct: 102 PPEYDVVKQFVEWCNSK----ETSLAVGQNINSFDNRMLKVATKRFKLNFPFE-RSLDTL 156
Query: 68 PLAREL-MKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITSDLNFTL 126
+A + +K+ G V+S L + +GI E AHRA++DV +L I E + D N L
Sbjct: 157 KMAINMKLKEKGLVASNQQ-SDLGKLYGI--EYVAHRAINDVEALYQIFEHLKKDYNGDL 213
>gi|331082129|ref|ZP_08331257.1| hypothetical protein HMPREF0992_00181 [Lachnospiraceae bacterium
6_1_63FAA]
gi|330405724|gb|EGG85254.1| hypothetical protein HMPREF0992_00181 [Lachnospiraceae bacterium
6_1_63FAA]
Length = 405
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 55/117 (47%), Gaps = 21/117 (17%)
Query: 4 RSYVPRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRF 63
+ Y P +EDL KYV +AHNA FD+ L+K + +P ++
Sbjct: 176 KEYWPSIEDLFK---KYV-----------IIAHNAN-FDLSVLSKTLLHYGLKVPP-IKY 219
Query: 64 LDTLPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITS 120
+ T +R Q G K SL+++ EYF IPLE H A SD +SI E I S
Sbjct: 220 VCTYNESRNKFPQLG----KYSLKSMAEYFDIPLENH-HDAKSDAQVCSSIFEAIKS 271
>gi|405960840|gb|EKC26714.1| DNA polymerase III polC-type [Crassostrea gigas]
Length = 372
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 15/101 (14%)
Query: 17 VIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQ 76
+I YV+ R P I V HN FD+P L K+ ++ D+ LDTL LAR+L +
Sbjct: 197 LIDYVSKREKP----IIVGHNVLSFDIPILIKKLQEFLRHVGDS---LDTLRLARKLFNK 249
Query: 77 N--GSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASIL 115
G+ +T +Q L + + AH A++DV +L +
Sbjct: 250 ETVGNYKQQTLVQVLGKSY------QAHDALTDVKNLYELF 284
>gi|443622030|ref|ZP_21106574.1| hypothetical protein STVIR_0479 [Streptomyces viridochromogenes
Tue57]
gi|443344485|gb|ELS58583.1| hypothetical protein STVIR_0479 [Streptomyces viridochromogenes
Tue57]
Length = 636
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 32/84 (38%), Positives = 45/84 (53%), Gaps = 7/84 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+ VAHNA+ FD FLA EF+R M +P + R TL L R++ + L L
Sbjct: 99 VLVAHNAQ-FDYDFLAYEFARARMWLPVSQRMC-TLALNRQV----DPPTDDMKLGTLAA 152
Query: 92 YFGIPLEGSAHRAMSDVNSLASIL 115
++G+P + AH A+ D LA IL
Sbjct: 153 HYGVP-QQRAHDALDDTRVLAGIL 175
>gi|312195665|ref|YP_004015726.1| DNA polymerase III epsilon subunit [Frankia sp. EuI1c]
gi|311227001|gb|ADP79856.1| DNA polymerase III, epsilon subunit [Frankia sp. EuI1c]
Length = 615
Score = 46.6 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 40/140 (28%), Positives = 67/140 (47%), Gaps = 16/140 (11%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
P + +++P ++++ + VAHNA FD+ FL R +P W LDT
Sbjct: 115 PPLAEVLPAFLEFIQG-------TVLVAHNAG-FDLSFLKAACERVGYPVP-TWEHLDTA 165
Query: 68 PLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSD----VNSLASILERITSDLN 123
LAR ++ ++ S ++K L +L F E HRA++D V+ L + ER+ +
Sbjct: 166 RLARRIVTRDESPNNK--LSSLARLFRARTE-PCHRALADARATVDVLHGLFERLGNLGV 222
Query: 124 FTLSDLLKTSFRANFDHSKK 143
TL D+ S R + +K
Sbjct: 223 TTLEDVHAYSARVSPAQRRK 242
>gi|398814377|ref|ZP_10573058.1| DNA polymerase III, alpha chain [Brevibacillus sp. BC25]
gi|398036646|gb|EJL29855.1| DNA polymerase III, alpha chain [Brevibacillus sp. BC25]
Length = 1434
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 52/97 (53%), Gaps = 17/97 (17%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMK-----QNGSVSSKTS 85
AI VAHNA FD F+ R M P + FLDTLPLAR + K + GS++ K +
Sbjct: 500 AILVAHNAE-FDKAFINACAKRIGME-PWSNSFLDTLPLARLMYKGMRNYRLGSLAKKFN 557
Query: 86 LQALREYFGIPLEGSAHRAMSDVNSLASILERITSDL 122
++ + +AHRA+ D +LA + +++ D+
Sbjct: 558 VELI----------NAHRALDDTVALAQVFQQMLKDI 584
>gi|46445870|ref|YP_007235.1| DNA polymerase III subunit epsilon [Candidatus Protochlamydia
amoebophila UWE25]
gi|46399511|emb|CAF22960.1| putative DNA polymerase III epsilon chain [Candidatus
Protochlamydia amoebophila UWE25]
Length = 249
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 53/104 (50%), Gaps = 19/104 (18%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWR---FL 64
P + ++P +++ ++ I + H FD+ LA R IP R FL
Sbjct: 72 PTINHVLPQILELISDH-------IIIGHGVG-FDIEILAVAAER--HGIPCKIRKNRFL 121
Query: 65 DTLPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDV 108
DTL +AR + S SL+ LR++F IPLEG AHRAMSDV
Sbjct: 122 DTLRMARLYGE-----SPVNSLEYLRKHFNIPLEG-AHRAMSDV 159
>gi|159897533|ref|YP_001543780.1| DNA polymerase III subunit epsilon [Herpetosiphon aurantiacus DSM
785]
gi|159890572|gb|ABX03652.1| DNA polymerase III, epsilon subunit [Herpetosiphon aurantiacus DSM
785]
Length = 282
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 54/107 (50%), Gaps = 13/107 (12%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
A+ VAHNA FD+ FL E SR + P +DTL LAR + + + +L +L
Sbjct: 106 AVLVAHNAY-FDIGFLTSELSRIDLP-PLETPVIDTLALARRYI-----TARRYNLTSLA 158
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILERITSDLN----FTLSDLLKTS 133
G + +HRAMSDV +L + E + L TL+DLL+
Sbjct: 159 TNLG--EKAPSHRAMSDVVALRPVFEHLLDILYRKGVHTLADLLRAQ 203
>gi|359409296|ref|ZP_09201764.1| DNA polymerase III, epsilon subunit [SAR116 cluster alpha
proteobacterium HIMB100]
gi|356676049|gb|EHI48402.1| DNA polymerase III, epsilon subunit [SAR116 cluster alpha
proteobacterium HIMB100]
Length = 235
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 47/87 (54%), Gaps = 13/87 (14%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
I V HNA FD+ FL E SRC R +DTLPLARE K G ++ SL AL
Sbjct: 85 ILVIHNAP-FDIGFLNAELSRCGQPPLSMERVVDTLPLARE--KYPG---AQASLDALCR 138
Query: 92 YFGIPLEGSAHR----AMSDVNSLASI 114
FG+ ++HR A+ D + LA++
Sbjct: 139 RFGV---DNSHRDLHGALIDADLLAAV 162
>gi|365904084|ref|ZP_09441843.1| ATP-dependent helicase DinG [Lactobacillus versmoldensis KCTC 3814]
Length = 934
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 46/135 (34%), Positives = 67/135 (49%), Gaps = 21/135 (15%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
P E+L P + K + + IF+AHN FD+PFL +EF+R MN N + +DT+
Sbjct: 69 PTFEELAPGIFKLLKDK-------IFIAHNVN-FDLPFLNREFNRIGMN-ELNIKAIDTV 119
Query: 68 PLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSD---VNSLASILERITSDLNF 124
L++ + +VSS LQ L Y I + + H A SD L ++E DL+
Sbjct: 120 ELSQIMFP---TVSS-YKLQDLTSYLSIEHD-NPHSADSDALVTAKLFLVIESQIRDLSM 174
Query: 125 T----LSDLLKTSFR 135
T L DL K + R
Sbjct: 175 TTLKQLVDLGKDTIR 189
>gi|347531724|ref|YP_004838487.1| DNA polymerase III subunit alpha [Roseburia hominis A2-183]
gi|345501872|gb|AEN96555.1| DNA polymerase III, alpha subunit [Roseburia hominis A2-183]
Length = 1507
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 15/108 (13%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
PR+E+++P +K+ E + VAHNA FD F+ K R M +P ++ DT+
Sbjct: 547 PRIEEILPEFMKFC-------EGTVMVAHNAE-FDTGFIRKNCER--MGLPFDFTIADTV 596
Query: 68 PLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASIL 115
LAR L+ Q ++ L + + G+ L+ HRA+ D A I
Sbjct: 597 ALARILLPQ----LNRFKLDTVAKAVGVSLD-HHHRAVDDAACTAEIF 639
>gi|422572387|ref|ZP_16647957.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL044PA1]
gi|314929290|gb|EFS93121.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL044PA1]
Length = 597
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 40/113 (35%), Positives = 62/113 (54%), Gaps = 15/113 (13%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNW---RFLDTLPLARELMKQNGSVSSKTSLQA 88
+ VAHNAR FD+ FL + +++ N P W +DTL LAR ++ + G V + L
Sbjct: 111 VLVAHNAR-FDIGFLKRAYAQ--HNYP--WGDPTLVDTLALARSVLSR-GEVRN-YKLST 163
Query: 89 LREYFGIPLEGSAHRAMSD----VNSLASILERITSDLNFTLSDLLKTSFRAN 137
L + F S+HRA++D V+ L ++ER+ S TL DLL+ + R +
Sbjct: 164 LSQLFRTTTM-SSHRALADARATVDVLHGLIERVGSFGVTTLEDLLEMTHRVS 215
>gi|395204293|ref|ZP_10395233.1| GIY-YIG catalytic domain protein [Propionibacterium humerusii P08]
gi|422440313|ref|ZP_16517127.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL037PA3]
gi|422471437|ref|ZP_16547937.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL037PA2]
gi|313837498|gb|EFS75212.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL037PA2]
gi|314971705|gb|EFT15803.1| GIY-YIG catalytic domain protein [Propionibacterium acnes HL037PA3]
gi|328906955|gb|EGG26721.1| GIY-YIG catalytic domain protein [Propionibacterium humerusii P08]
Length = 598
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 40/113 (35%), Positives = 62/113 (54%), Gaps = 15/113 (13%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNW---RFLDTLPLARELMKQNGSVSSKTSLQA 88
+ VAHNAR FD+ FL + +++ N P W +DTL LAR ++ + G V + L
Sbjct: 112 VLVAHNAR-FDIGFLKRAYAQ--HNYP--WGDPTLVDTLALARSVLSR-GEVRN-YKLST 164
Query: 89 LREYFGIPLEGSAHRAMSD----VNSLASILERITSDLNFTLSDLLKTSFRAN 137
L + F S+HRA++D V+ L ++ER+ S TL DLL+ + R +
Sbjct: 165 LSQLFRTTTM-SSHRALADARATVDVLHGLIERVGSFGVTTLEDLLEMTHRVS 216
>gi|255505426|ref|ZP_05346027.3| helicase, RecD/TraA family [Bryantella formatexigens DSM 14469]
gi|255267960|gb|EET61165.1| hypothetical protein BRYFOR_06810 [Marvinbryantia formatexigens DSM
14469]
Length = 1010
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+ V HN FD+ FL ++ + +PDN ++DTL LAR + + S L L E
Sbjct: 105 VLVGHNINSFDMKFLYRDAKKYFRKVPDN-DYVDTLLLARAALPE----LSHHRLVDLAE 159
Query: 92 YFGIPLEGSAHRAMSD 107
++GI +G AHRA++D
Sbjct: 160 HYGISAKG-AHRALND 174
>gi|225572667|ref|ZP_03781422.1| hypothetical protein RUMHYD_00855 [Blautia hydrogenotrophica DSM
10507]
gi|225039967|gb|EEG50213.1| DNA polymerase III, alpha subunit, Gram-positive type [Blautia
hydrogenotrophica DSM 10507]
Length = 1464
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 56/108 (51%), Gaps = 15/108 (13%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
P +E+++P +++ + A+ VAHNA FD+ F+ EF+ + IP ++ ++DT+
Sbjct: 503 PVIEEVLPKFLEFCSG-------AVMVAHNAD-FDMSFV--EFNCDRLGIPHDFTYIDTV 552
Query: 68 PLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASIL 115
+AR L+ T +AL IPL G HRA+ D A I
Sbjct: 553 GMARFLLPSLNRFKLDTVAKALE----IPL-GHHHRAVDDAACTADIF 595
>gi|302519143|ref|ZP_07271485.1| DNA polymerase III [Streptomyces sp. SPB78]
gi|302428038|gb|EFK99853.1| DNA polymerase III [Streptomyces sp. SPB78]
Length = 664
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 7/88 (7%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+ VAHNA+ FD FLA EF+R + +P R L TL L R++ + L +L
Sbjct: 151 VLVAHNAQ-FDYDFLAHEFARARLYLPVTRR-LCTLALNRQV----DPPTRDMKLGSLAA 204
Query: 92 YFGIPLEGSAHRAMSDVNSLASILERIT 119
++G+P AH A+ D LA I R T
Sbjct: 205 HYGVP-RTRAHDALDDTRVLAGIFLRAT 231
>gi|260890306|ref|ZP_05901569.1| DNA polymerase III, alpha subunit [Leptotrichia hofstadii F0254]
gi|260859926|gb|EEX74426.1| DNA polymerase III, alpha subunit [Leptotrichia hofstadii F0254]
Length = 1151
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 35/94 (37%), Positives = 50/94 (53%), Gaps = 11/94 (11%)
Query: 34 VAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREYF 93
VAHNA+ FDV F+ ++ + + +DTLPLAR L+ S L L +YF
Sbjct: 199 VAHNAK-FDVGFIKQKTIEQGLEYSPS--VIDTLPLARTLLPD----SRGYGLANLVKYF 251
Query: 94 GIPLEGSAHRAMSDVNSLASILERITSDLNFTLS 127
GI LE + HRA+ D + A + ++ LN LS
Sbjct: 252 GITLE-THHRAVDDAKATAEVFQKF---LNMILS 281
>gi|149637346|ref|XP_001510677.1| PREDICTED: three prime repair exonuclease 2-like [Ornithorhynchus
anatinus]
Length = 240
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 44/90 (48%), Gaps = 7/90 (7%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMK--QNGSVSSKTSLQAL 89
VAHN +D P L E R N+P+N LDTLP + L K +G+ S+ L
Sbjct: 113 CLVAHNGFAYDFPLLRTELGRLDANLPENTYCLDTLPALKGLDKAHDHGTRSNHGKSYRL 172
Query: 90 ----REYFGIPLEGSAHRAMSDVNSLASIL 115
R+YFG + +AH A DV +L +
Sbjct: 173 GDLYRQYFGDDPK-AAHSAEGDVYTLVMVF 201
>gi|168187912|ref|ZP_02622547.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
botulinum C str. Eklund]
gi|169294244|gb|EDS76377.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
botulinum C str. Eklund]
Length = 1441
Score = 45.8 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 11/118 (9%)
Query: 28 GEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQ 87
E + VAHN+ FD+ F+ K + +NI N+ +DT+PLA+ L + + L
Sbjct: 504 AEDTVLVAHNSN-FDMSFIRKNCN--DLNIECNYTVMDTIPLAKFLFPE----LKRYKLN 556
Query: 88 ALREYFGIPLEGSAHRAMSDVNSLASILE---RITSDLNFTLSDLLKTSFRANFDHSK 142
+ ++ G+ LE + HRA+ D + IL ++ ++ T + L F N D K
Sbjct: 557 TIAKHLGVSLE-NHHRAVDDAKATGDILVHCFKLLKEMEITSLNDLNNKFLGNIDVKK 613
>gi|350546380|ref|ZP_08915769.1| DNA polymerase III subunit alpha [Mycoplasma iowae 695]
gi|349504034|gb|EGZ31588.1| DNA polymerase III subunit alpha [Mycoplasma iowae 695]
Length = 1439
Score = 45.8 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 6/88 (6%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
A+ VAHN +FD+PFL + + +M + +N +DTL L+R L +Q S +L A+
Sbjct: 483 AVIVAHNGFKFDIPFLNCKLAEHNMPLINNTS-IDTLYLSRALNEQ----ISGHTLGAIC 537
Query: 91 EYFGIPLEGS-AHRAMSDVNSLASILER 117
F I + S AHR+++D L S+ +R
Sbjct: 538 RKFKINYDESIAHRSLADCEYLLSVWKR 565
>gi|51849608|dbj|BAD42331.1| DNA helicase RecG [Nannochloris bacillaris]
Length = 1341
Score = 45.8 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Query: 26 GPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKT- 84
PG + V HN RFD+P L R + P + R LDTL +R L+ GS +
Sbjct: 221 APGAFPLLVGHNIERFDLPLLLHCAKRFDVAAPLSARILDTLSASRSLL--TGSAKPEAF 278
Query: 85 SLQALREYFGIPLEGSAHRAMSDVNSLASIL 115
+L L + +AHRA +DV ++L
Sbjct: 279 NLTTLYGHLTRKEAIAAHRASADVKMTVAVL 309
>gi|253573562|ref|ZP_04850905.1| DNA polymerase III, alpha subunit [Paenibacillus sp. oral taxon 786
str. D14]
gi|251847090|gb|EES75095.1| DNA polymerase III, alpha subunit [Paenibacillus sp. oral taxon 786
str. D14]
Length = 1438
Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 39/120 (32%), Positives = 55/120 (45%), Gaps = 11/120 (9%)
Query: 2 VNRSYVPRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNW 61
+N V D+ P++ ++V E AI VAHNA RFD F+ + + I +N
Sbjct: 475 INDDMVKDAPDVEPVLKRFVEF----AEDAILVAHNA-RFDYDFVNAKLKELGLPIMEN- 528
Query: 62 RFLDTLPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITSD 121
LDTL LAR L L L + + LE + HRA+ D +L IL + D
Sbjct: 529 PVLDTLELARMLF----PTMKNHRLNTLAAKYKVSLE-NHHRAIDDTVALGEILNGLLDD 583
>gi|420160877|ref|ZP_14667648.1| DNA polymerase III PolC [Weissella koreensis KCTC 3621]
gi|394745627|gb|EJF34445.1| DNA polymerase III PolC [Weissella koreensis KCTC 3621]
Length = 1524
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 6/91 (6%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
I V HN FDVP + + R M N +DTLPLAR + + + +L L +
Sbjct: 561 ILVGHNVIDFDVPMVNTTYERLGMETISN-VVVDTLPLARFVHPE----MRRFTLSTLAK 615
Query: 92 YFGIPLEGSAHRAMSDVNSLASILERITSDL 122
G+PL+ AH A+ D + + ++ D+
Sbjct: 616 KLGVPLD-HAHNAIFDATATGQVARKLLQDM 645
>gi|339634878|ref|YP_004726519.1| DNA polymerase III PolC [Weissella koreensis KACC 15510]
gi|338854674|gb|AEJ23840.1| DNA polymerase III PolC [Weissella koreensis KACC 15510]
Length = 1524
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 6/91 (6%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
I V HN FDVP + + R M N +DTLPLAR + + + +L L +
Sbjct: 561 ILVGHNVIDFDVPMVNTTYERLGMETISN-VVVDTLPLARFVHPE----MRRFTLSTLAK 615
Query: 92 YFGIPLEGSAHRAMSDVNSLASILERITSDL 122
G+PL+ AH A+ D + + ++ D+
Sbjct: 616 KLGVPLD-HAHNAIFDATATGQVARKLLQDM 645
>gi|226313025|ref|YP_002772919.1| DNA polymerase III alpha subunit [Brevibacillus brevis NBRC 100599]
gi|226095973|dbj|BAH44415.1| DNA polymerase III alpha subunit [Brevibacillus brevis NBRC 100599]
Length = 1434
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 51/97 (52%), Gaps = 17/97 (17%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMK-----QNGSVSSKTS 85
AI VAHNA FD F+ R M P FLDTLPLAR + K + GS++ K +
Sbjct: 500 AILVAHNAE-FDKAFINACAKRIGME-PWTNPFLDTLPLARLMYKGMRNYRLGSLAKKFN 557
Query: 86 LQALREYFGIPLEGSAHRAMSDVNSLASILERITSDL 122
++ + +AHRA+ D +LA + +++ D+
Sbjct: 558 VELI----------NAHRALDDTVALAHVFQQMLKDI 584
>gi|374622847|ref|ZP_09695367.1| putative PAS/PAC sensor protein [Ectothiorhodospira sp. PHS-1]
gi|373941968|gb|EHQ52513.1| putative PAS/PAC sensor protein [Ectothiorhodospira sp. PHS-1]
Length = 713
Score = 45.4 bits (106), Expect = 0.008, Method: Composition-based stats.
Identities = 37/130 (28%), Positives = 66/130 (50%), Gaps = 19/130 (14%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
P + +++P+ +V A+ VAHNA FD+ F++ + +RC ++ P+ LDTL
Sbjct: 574 PPVTEVLPLFKAFVGD-------AVMVAHNAA-FDMKFISMKEARCGISFPNP--VLDTL 623
Query: 68 PLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITSDLNF--- 124
L+ + + SL AL E +GI + G H A+ D + A +L R+ L
Sbjct: 624 LLSVMVEDE----EEDHSLDALLERYGIQISGR-HTALGDAVATAELLVRLIERLQAQGF 678
Query: 125 -TLSDLLKTS 133
T +++++S
Sbjct: 679 KTFGEVMRSS 688
>gi|365134462|ref|ZP_09343288.1| DNA polymerase III, alpha subunit, Gram-positive type
[Subdoligranulum sp. 4_3_54A2FAA]
gi|363614038|gb|EHL65541.1| DNA polymerase III, alpha subunit, Gram-positive type
[Subdoligranulum sp. 4_3_54A2FAA]
Length = 1442
Score = 45.4 bits (106), Expect = 0.008, Method: Composition-based stats.
Identities = 36/115 (31%), Positives = 55/115 (47%), Gaps = 14/115 (12%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
P E+ + +++V+ R + +AHNA FD+ FL R +P ++DTL
Sbjct: 470 PGQEEALRAFLEFVDGR-------VLIAHNAHGFDIRFLKACAER--YGVPFGNTYIDTL 520
Query: 68 PLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITSDL 122
PLA+ L G + K L + +Y IP HRA D +LA I ++ DL
Sbjct: 521 PLAQALYL--GLRNYK--LDTIGKYLEIP-PFQHHRACDDAKALAQIYVKMIEDL 570
>gi|282600891|ref|ZP_06257782.1| DNA polymerase III, alpha subunit [Subdoligranulum variabile DSM
15176]
gi|282571272|gb|EFB76807.1| DNA polymerase III, alpha subunit, Gram-positive type
[Subdoligranulum variabile DSM 15176]
Length = 1347
Score = 45.4 bits (106), Expect = 0.008, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 6/91 (6%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+ VAHNA FD+ F+ K + ++ +N ++DTLP+ + L G + K L + +
Sbjct: 403 VLVAHNAHSFDMLFIRKAGEKAGISFDEN-TYIDTLPMGQALFP--GLRNYK--LDTINK 457
Query: 92 YFGIPLEGSAHRAMSDVNSLASILERITSDL 122
+ IP + HRA+ D +LA I E + +DL
Sbjct: 458 HLEIP-PFNHHRAVDDAMALARIFEVMLNDL 487
>gi|111224492|ref|YP_715286.1| hypothetical protein FRAAL5108 [Frankia alni ACN14a]
gi|111152024|emb|CAJ63748.1| putative DNA-directed DNA polymerase [Frankia alni ACN14a]
Length = 580
Score = 45.1 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 41/140 (29%), Positives = 66/140 (47%), Gaps = 16/140 (11%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
P +++P +++ A+ VAHNA FD+ FL RC P W LDTL
Sbjct: 84 PAEAEVVPTFLEFARG-------AVLVAHNAP-FDLGFLRAAAQRCGYP-PPAWEHLDTL 134
Query: 68 PLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSD----VNSLASILERITSDLN 123
+AR L+ ++ + + L +L F E HRA++D V+ L + ER+ +
Sbjct: 135 RIARRLVSRDEAPDCR--LASLARLFRSSTE-PCHRALADARATVDVLHGLFERLGNAGV 191
Query: 124 FTLSDLLKTSFRANFDHSKK 143
TL +L + S R + +K
Sbjct: 192 RTLEELHEYSARVSPAQRRK 211
>gi|254489685|ref|ZP_05102881.1| exonuclease family [Methylophaga thiooxidans DMS010]
gi|224465094|gb|EEF81347.1| exonuclease family [Methylophaga thiooxydans DMS010]
Length = 488
Score = 45.1 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 30/94 (31%), Positives = 50/94 (53%), Gaps = 8/94 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+ VAHNAR FD FL + F RC + + + L ++ L+R+L ++ S L + E
Sbjct: 91 VIVAHNAR-FDYSFLRQSFQRCGYTLGN--KTLCSVKLSRQLFPEHRS----HGLDRIIE 143
Query: 92 YFGIPLEGSAHRAMSDVNSLASILERITSDLNFT 125
G+ ++ + HRAM+D L + E I++ T
Sbjct: 144 RLGLTID-NRHRAMADTEVLLAFFEHISAQFPAT 176
>gi|348520167|ref|XP_003447600.1| PREDICTED: DNA polymerase III polC-type-like [Oreochromis
niloticus]
Length = 240
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 6/86 (6%)
Query: 32 IFVAHNARRFDVPFLAK---EFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQA 88
+ V HN RRFD P LA+ EF + +DTLPL+RE+++ G S +
Sbjct: 99 LVVGHNIRRFDCPLLARALDEFGLRAEFESSVSGCVDTLPLSREVLRDYGLESFRQE-NL 157
Query: 89 LREYFGIPLEGSAHRAMSDVNSLASI 114
+RE G+ + AH A+ DV +L ++
Sbjct: 158 VRELLGVSYK--AHDALEDVRALQAL 181
>gi|395010735|ref|ZP_10394084.1| DNA polymerase III, alpha subunit (gram-positive type) [Acidovorax
sp. CF316]
gi|394311183|gb|EJE48563.1| DNA polymerase III, alpha subunit (gram-positive type) [Acidovorax
sp. CF316]
Length = 209
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
A VAHNA FD F E + + P F T+ L+R L + + L L
Sbjct: 84 APMVAHNAA-FDSKFWQAELALAGVAAPHP--FACTVLLSRRLYPE----APSHKLGTLV 136
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILERITSDL 122
+Y G+P G AHRA++D A +L R+ DL
Sbjct: 137 DYHGLPRTGRAHRALADAEMAAELLARMQHDL 168
>gi|347526390|ref|YP_004833137.1| DNA polymerase III subunit epsilon [Sphingobium sp. SYK-6]
gi|345135071|dbj|BAK64680.1| DNA polymerase III epsilon subunit [Sphingobium sp. SYK-6]
Length = 233
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Query: 33 FVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREY 92
VAHNAR FD FL E RC + + D R +D+L +AR L +K SL AL
Sbjct: 86 LVAHNAR-FDFGFLNAELERCRLPLVDLERMIDSLTIARTLHP-----GAKHSLDALCSR 139
Query: 93 FGIPLEGSA-HRAMSDVNSLASILERITSDLNFTLS 127
+GI H A+ D LA + +T L
Sbjct: 140 YGIDRSHRVKHGALLDAELLAQLYIELTGGRQIGLG 175
>gi|332668025|ref|YP_004450813.1| DNA polymerase III subunit epsilon [Haliscomenobacter hydrossis DSM
1100]
gi|332336839|gb|AEE53940.1| DNA polymerase III, epsilon subunit [Haliscomenobacter hydrossis
DSM 1100]
Length = 463
Score = 45.1 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 36/90 (40%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 29 EIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQA 88
E AIFVAHNA RFD F+ +EF R + L TL LAR+ + L A
Sbjct: 82 EGAIFVAHNA-RFDYSFIGEEFKRLGYTYTR--KQLCTLRLARQTLPG----LYAYGLDA 134
Query: 89 LREYFGIPLEGSAHRAMSDVNSLASILERI 118
L +F I + + HRAM DV + +LE I
Sbjct: 135 LSRHFNIHNQ-ARHRAMGDVQATIKVLEYI 163
>gi|330994285|ref|ZP_08318213.1| DNA polymerase III subunit epsilon [Gluconacetobacter sp. SXCC-1]
gi|329758752|gb|EGG75268.1| DNA polymerase III subunit epsilon [Gluconacetobacter sp. SXCC-1]
Length = 226
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 45/96 (46%), Gaps = 7/96 (7%)
Query: 33 FVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREY 92
+AHNAR FD FL E +R + D R +DTL +ARE SL AL
Sbjct: 87 LIAHNAR-FDFGFLNAELARAGQPVLDMGRMVDTLDMARERFP-----GMPNSLDALCRR 140
Query: 93 FGIPL-EGSAHRAMSDVNSLASILERITSDLNFTLS 127
F I L E + H A+ D LA++ +T LS
Sbjct: 141 FSIDLSERTTHNALLDCRLLAAVYLELTGGRQRGLS 176
>gi|392955788|ref|ZP_10321318.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Bacillus macauensis ZFHKF-1]
gi|391878030|gb|EIT86620.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Bacillus macauensis ZFHKF-1]
Length = 936
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 51/108 (47%), Gaps = 14/108 (12%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
P E++ P ++ + E A FVAHN FD+ FL +EF RC LDT+
Sbjct: 69 PLFEEVAPTLLTML-------EGAYFVAHNVL-FDLNFLQEEFQRCGYATFQG-PLLDTV 119
Query: 68 PLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASIL 115
LAR L Q + L L +Y GI E + H+A SD A +L
Sbjct: 120 ELARLLFLQ----ADGYQLNQLADYLGIVHE-NPHQADSDAEVTAHLL 162
>gi|290979061|ref|XP_002672253.1| predicted protein [Naegleria gruberi]
gi|284085828|gb|EFC39509.1| predicted protein [Naegleria gruberi]
Length = 1200
Score = 45.1 bits (105), Expect = 0.010, Method: Composition-based stats.
Identities = 38/152 (25%), Positives = 69/152 (45%), Gaps = 13/152 (8%)
Query: 2 VNRSYV---PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIP 58
+N +YV P +E + +I ++++ G +AHN D KEF +
Sbjct: 862 INLNYVRDKPIIEKELDFIIDFISNTKGK---TFLIAHNGEILDFKVFKKEFYPKRESKF 918
Query: 59 DNWRFLDTLPLAR-------ELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSL 111
+N F+D+L L + +L K+ S + + L E+F + H A DV L
Sbjct: 919 ENIVFVDSLKLMKSHKDLHHKLPKKESSGRTAFKEEMLIEHFQVGNVADCHCAFFDVIGL 978
Query: 112 ASILERITSDLNFTLSDLLKTSFRANFDHSKK 143
+IL + D+N +S++ + S +N + +K
Sbjct: 979 FNILNKFFDDVNTAISNIQEFSKTSNIEKKRK 1010
>gi|424840887|ref|ZP_18265512.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
[Saprospira grandis DSM 2844]
gi|395319085|gb|EJF52006.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
[Saprospira grandis DSM 2844]
Length = 206
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 5/97 (5%)
Query: 27 PGEIA-IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLAR---ELMKQNGSVSS 82
PG + + V + +D+ FL + P +++ +D A L+++NG +S
Sbjct: 98 PGALKRLVVCGQSVHYDINFLRFAYMDLKQPYPFSFKTIDLYQQAYFLFRLLRENGQPTS 157
Query: 83 KT-SLQALREYFGIPLEGSAHRAMSDVNSLASILERI 118
K SL AL EYFG+ EG H A+ D A+ LE +
Sbjct: 158 KGLSLGALSEYFGLQREGDMHNALEDAELTAACLEEV 194
>gi|452990823|emb|CCQ97944.1| DNA polymerase III (alpha subunit) [Clostridium ultunense Esp]
Length = 1435
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
A+ VAHNAR FD+ F++ F R M N LDTL LAR L+K L L
Sbjct: 496 AVLVAHNAR-FDMGFISVGFRREGMGEIGN-PVLDTLELARNLLKD----LKNHRLDTLS 549
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILERITSDLN 123
Y+G+ L HRA+ D + +L ++ L
Sbjct: 550 SYYGVTLT-QHHRAVYDAEATGHLLFKMLDTLK 581
>gi|347759242|ref|YP_004866803.1| DNA polymerase III exonuclease subunit epsilon [Gluconacetobacter
xylinus NBRC 3288]
gi|347578212|dbj|BAK82433.1| DNA polymerase III exonuclease epsilon subunit [Gluconacetobacter
xylinus NBRC 3288]
Length = 226
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 45/96 (46%), Gaps = 7/96 (7%)
Query: 33 FVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREY 92
+AHNAR FD FL E +R + D R +DTL +ARE SL AL
Sbjct: 87 LIAHNAR-FDFGFLNAELARAKQPVLDMGRMVDTLDMARERFP-----GMPNSLDALCRR 140
Query: 93 FGIPL-EGSAHRAMSDVNSLASILERITSDLNFTLS 127
F I L E + H A+ D LA++ +T LS
Sbjct: 141 FSIDLSERTTHNALLDCKLLAAVYLELTGGRQRGLS 176
>gi|114798147|ref|YP_758739.1| DNA polymerase III subunit epsilon [Hyphomonas neptunium ATCC
15444]
gi|114738321|gb|ABI76446.1| DNA polymerase III, epsilon subunit [Hyphomonas neptunium ATCC
15444]
Length = 232
Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 44/85 (51%), Gaps = 7/85 (8%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
AI VAHNA FD FL E RC +I R++DT+ +AR+ + SL AL
Sbjct: 90 AIIVAHNAS-FDRGFLNMELQRCGRDIIPEDRWVDTVQMARKRYP-----GAPASLDALC 143
Query: 91 EYFGIPLEGSA-HRAMSDVNSLASI 114
+ F I LE H A+ D LAS+
Sbjct: 144 KRFDISLESRTFHGALLDSQLLASV 168
>gi|239991387|ref|ZP_04712051.1| DNA polymerase III [Streptomyces roseosporus NRRL 11379]
gi|291448385|ref|ZP_06587775.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
15998]
gi|291351332|gb|EFE78236.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
15998]
Length = 641
Score = 44.7 bits (104), Expect = 0.011, Method: Composition-based stats.
Identities = 32/84 (38%), Positives = 45/84 (53%), Gaps = 7/84 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+ VAHNA+ FD FLA EF+R M +P + R L TL L R++ + L L
Sbjct: 99 VLVAHNAQ-FDYDFLAHEFARARMWLPVSQR-LCTLALNRQV----DPPTDDMKLGTLAT 152
Query: 92 YFGIPLEGSAHRAMSDVNSLASIL 115
++ +P + AH A+ D LA IL
Sbjct: 153 HYDVP-QQRAHDALDDTRVLAGIL 175
>gi|403667449|ref|ZP_10932755.1| ATP-dependent helicase dinG [Kurthia sp. JC8E]
Length = 927
Score = 44.7 bits (104), Expect = 0.012, Method: Composition-based stats.
Identities = 41/116 (35%), Positives = 54/116 (46%), Gaps = 15/116 (12%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNW--RFLDTLPLARELMKQNGSVSSKTSLQAL 89
+FVAHN FD+PFL EF RC + W + LDT+ LA+ L S LQ L
Sbjct: 87 VFVAHNID-FDLPFLQAEFERCRL---PKWQGKCLDTVELAKILF----PTSYSYKLQDL 138
Query: 90 REYFGIPLEGSAHRAMSDVNSLASIL----ERITSDLNFTLSDLLKTSFRANFDHS 141
GI L AHRA D + A +L E++ + L + SF+ D S
Sbjct: 139 AMDLGI-LHEQAHRADDDALATAYLLKACYEKLLQLPQHVVEQLHRRSFQVKTDLS 193
>gi|404379238|ref|ZP_10984303.1| exonuclease, DNA polymerase III, epsilon subunit [Simonsiella
muelleri ATCC 29453]
gi|294482690|gb|EFG30379.1| exonuclease, DNA polymerase III, epsilon subunit [Simonsiella
muelleri ATCC 29453]
Length = 450
Score = 44.7 bits (104), Expect = 0.012, Method: Composition-based stats.
Identities = 36/109 (33%), Positives = 50/109 (45%), Gaps = 14/109 (12%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
P D+IP ++ + L VAHN+R FD L EF R +P L T+
Sbjct: 81 PTFADVIPHILPMLRGSL-------LVAHNSR-FDYTLLRNEFRRAG--VPFATPTLCTV 130
Query: 68 PLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILE 116
L+R L K +L A+ FG+ +G HRA +DV LA L+
Sbjct: 131 KLSRTLYPN----EHKHNLDAVANRFGLTSDGKRHRAWADVAILADFLQ 175
>gi|315924481|ref|ZP_07920702.1| DNA polymerase III PolC [Pseudoramibacter alactolyticus ATCC 23263]
gi|315622185|gb|EFV02145.1| DNA polymerase III PolC [Pseudoramibacter alactolyticus ATCC 23263]
Length = 1442
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 8/87 (9%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
I AHNA FD+ F++ R IP+ ++DTLP+AR L+ ++ +L+ L
Sbjct: 507 ILAAHNAS-FDMGFMSIALER--YGIPNTITYVDTLPMARTLIPD----IARHNLKKLAS 559
Query: 92 YFGIPLEGSAHRAMSDVNSLASILERI 118
YF I + G HRA+ D A I R+
Sbjct: 560 YFKIDM-GHHHRAIDDSICSAKIFVRL 585
>gi|405957951|gb|EKC24127.1| hypothetical protein CGI_10016676 [Crassostrea gigas]
Length = 355
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 11/102 (10%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDN---WRFLDTLPLARELMKQNGSVSSKTSLQA 88
+ AHN R+FD L + +C +IP F DTLP+ ++ N + S+ +L
Sbjct: 168 LLFAHNCRKFDSVVLCRAMRKCP-DIPLQDCIIGFCDTLPMLKDHASCNTTNSTLETL-- 224
Query: 89 LREYFGIPLEGSAHRAMSDVNSLASILERITSD---LNFTLS 127
+ E G E AH A+ D L ++E ++D LN+T S
Sbjct: 225 VLEILGCTFE--AHNALEDCTYLQKLVEHHSTDSYYLNYTFS 264
>gi|407893514|ref|ZP_11152544.1| DNA polymerase III subunit epsilon [Diplorickettsia massiliensis
20B]
Length = 240
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 49/96 (51%), Gaps = 10/96 (10%)
Query: 29 EIAIFVAHNARRFDVPFLAKEFSRCSMN---IPDNWRFLDTLPLARELMKQNGSVSSKTS 85
E A + HNA FD+ FL +E + C + + D R LDTLPLAR+L + S
Sbjct: 82 EGAELIIHNAP-FDLSFLDQELALCQKDYKKMTDYCRVLDTLPLARQLHP-----GQRNS 135
Query: 86 LQALREYFGIPL-EGSAHRAMSDVNSLASILERITS 120
L AL + + I L + H A+ DV LA + +T
Sbjct: 136 LDALCKRYAIDLSKRERHGALIDVELLARVYLAMTG 171
>gi|158316676|ref|YP_001509184.1| DNA polymerase III subunit epsilon [Frankia sp. EAN1pec]
gi|158112081|gb|ABW14278.1| Exonuclease RNase T and DNA polymerase III [Frankia sp. EAN1pec]
Length = 389
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 45/87 (51%), Gaps = 7/87 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+ VAHNA FD LA E R IP WR L TL LA L + S+ L +L
Sbjct: 156 VLVAHNAA-FDWRMLAGEAMRIGTTIPVEWR-LCTLTLASRLGLELPSL----RLASLAA 209
Query: 92 YFGIPLEGSAHRAMSDVNSLASILERI 118
Y+G+ ++ AH A D LA++L RI
Sbjct: 210 YWGV-VQRRAHDAQDDAEVLAALLPRI 235
>gi|62184729|ref|YP_219514.1| DNA polymerase III subunit epsilon [Chlamydophila abortus S26/3]
gi|424824778|ref|ZP_18249765.1| DNA polymerase III subunit epsilon chain [Chlamydophila abortus
LLG]
gi|62147796|emb|CAH63542.1| putative DNA polymerase III epsilon chain [Chlamydophila abortus
S26/3]
gi|333409877|gb|EGK68864.1| DNA polymerase III subunit epsilon chain [Chlamydophila abortus
LLG]
Length = 249
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 13/110 (11%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
PR+ ++ P + S L G+ ++ ++ FD+ L++E R + +DTL
Sbjct: 72 PRIAEVFP----KIKSFLKEGD---YIVGHSVGFDLQVLSQEAERIGETFLSKYYIIDTL 124
Query: 68 PLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILER 117
LA+E S SL+AL +F +P +G+ HRAM DV SI +
Sbjct: 125 RLAKEY-----GDSPNNSLEALAVHFNVPYDGN-HRAMKDVEINISIFKH 168
>gi|254672325|emb|CBA05474.1| DNA polymerase III alpha subunit, the Gram-positive type [Neisseria
meningitidis alpha275]
Length = 312
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 53/105 (50%), Gaps = 10/105 (9%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
+ VAHN+R FD FL EF R + L ++ L+R L Q K SL ++
Sbjct: 99 CVLVAHNSR-FDYTFLKHEFHRAGIGFSSP--ALCSVQLSRCLYPQ----FYKHSLDSII 151
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILERITSDLNFTLSDLLKTSFR 135
E GI +E HRAM+DV++L LE S+ + + ++ FR
Sbjct: 152 ERLGIVVE-DRHRAMADVSALCDYLEYSLSEHG--VEEWIRQCFR 193
>gi|317125104|ref|YP_004099216.1| DNA polymerase III subunit epsilon [Intrasporangium calvum DSM
43043]
gi|315589192|gb|ADU48489.1| DNA polymerase III, epsilon subunit [Intrasporangium calvum DSM
43043]
Length = 590
Score = 44.3 bits (103), Expect = 0.015, Method: Composition-based stats.
Identities = 41/140 (29%), Positives = 65/140 (46%), Gaps = 16/140 (11%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
PR+E P +++ ++ VAHNA FD+ FL R P + LDTL
Sbjct: 83 PRIESAFPAFLEFAAG-------SVLVAHNAG-FDISFLKAAAVRTGTPWP-GFDVLDTL 133
Query: 68 PLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSD----VNSLASILERITSDLN 123
LAR+L+ ++ + K L +L F P HRA+ D V+ L ++ER+ +
Sbjct: 134 TLARQLVTRDEVPNHK--LSSLARVFASPTTPD-HRALHDARATVDVLHGLIERVGNLGV 190
Query: 124 FTLSDLLKTSFRANFDHSKK 143
TL +L + R + +K
Sbjct: 191 HTLEELASYTSRVSPAQRRK 210
>gi|333983689|ref|YP_004512899.1| DNA polymerase III subunit epsilon [Methylomonas methanica MC09]
gi|333807730|gb|AEG00400.1| DNA polymerase III, epsilon subunit [Methylomonas methanica MC09]
Length = 466
Score = 44.3 bits (103), Expect = 0.015, Method: Composition-based stats.
Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 9/101 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+F+AHNAR FD FL EF R M P L T+ L+R L Q+ +L +L +
Sbjct: 85 LFIAHNAR-FDYGFLKNEFKRIGM--PFQPSVLCTVKLSRALFPQH----RHHNLDSLIQ 137
Query: 92 YFGIPLEGSAHRAMSDVNSLASILERITSDLNF-TLSDLLK 131
G+ + HRA++D ++ +R++ + TLSD ++
Sbjct: 138 RHGLTVT-DRHRALADAQAIHQFWQRLSHEFTADTLSDTVQ 177
>gi|398802259|ref|ZP_10561475.1| DNA polymerase III, alpha subunit (gram-positive type) [Polaromonas
sp. CF318]
gi|398100728|gb|EJL90961.1| DNA polymerase III, alpha subunit (gram-positive type) [Polaromonas
sp. CF318]
Length = 212
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
A VAHNA FD F E S + + F T+ +AR L Q S L L
Sbjct: 86 APMVAHNAS-FDRRFWEAELSLAAGEKTVSQPFACTMLVARRLYPQAPS----HKLGVLI 140
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILERITSDL 122
+Y +P G AHRAM+D AS+L +I DL
Sbjct: 141 DYHRLPKAGRAHRAMADAEMAASLLGQIQDDL 172
>gi|406591901|ref|YP_006739081.1| exonuclease, DNA polymerase III subunit epsilon domain-containing
protein [Chlamydia psittaci CP3]
gi|405787773|gb|AFS26516.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Chlamydia psittaci CP3]
Length = 249
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 55/109 (50%), Gaps = 13/109 (11%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
PR+ ++ P + S L G+ ++ ++ FD+ L++E R + + +DTL
Sbjct: 72 PRIAEVFP----KIKSFLKEGD---YIVGHSVGFDLQVLSQEAERIGESFLSKYYVIDTL 124
Query: 68 PLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILE 116
LA+E S SL+AL +F +P +G+ HRAM DV SI +
Sbjct: 125 RLAKEY-----GDSPNNSLEALAVHFNVPYDGN-HRAMKDVEINISIFK 167
>gi|182417583|ref|ZP_02948906.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
butyricum 5521]
gi|237668138|ref|ZP_04528122.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
butyricum E4 str. BoNT E BL5262]
gi|182378596|gb|EDT76124.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
butyricum 5521]
gi|237656486|gb|EEP54042.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
butyricum E4 str. BoNT E BL5262]
Length = 1450
Score = 44.3 bits (103), Expect = 0.017, Method: Composition-based stats.
Identities = 37/117 (31%), Positives = 55/117 (47%), Gaps = 12/117 (10%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
++ VAHNA FD F+ K + I N+ +DT+PLAR L K L +
Sbjct: 516 SVLVAHNAA-FDTGFIKKNCR--DLGIDFNYSIMDTVPLARFLCPD----LKKVKLNLVA 568
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILER----ITSDLNFTLSDLLKTSFRANFDHSKK 143
++ GI L+ + HRA+ D A IL + + D + L F +NFD K+
Sbjct: 569 KHLGISLD-NHHRAVDDAKCTAEILLKFFTMLKEDHSINTLKQLNDLFVSNFDIKKQ 624
>gi|154488710|ref|ZP_02029559.1| hypothetical protein BIFADO_02017 [Bifidobacterium adolescentis
L2-32]
gi|154082847|gb|EDN81892.1| exonuclease, DNA polymerase III, epsilon subunit family
[Bifidobacterium adolescentis L2-32]
Length = 210
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 10/88 (11%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIP-DNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
+FVAHN FD FL E+SR +IP L T+ L+R L+ + L
Sbjct: 85 VFVAHNVS-FDSRFLLAEYSRMGASIPVHQSTMLCTMKLSRSLI-------GRGKLSDCC 136
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILERI 118
+YFGI E AH A+SD ++ A +L R+
Sbjct: 137 DYFGIANE-DAHSALSDAHATALLLGRL 163
>gi|329942403|ref|ZP_08291213.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Chlamydophila psittaci Cal10]
gi|332287044|ref|YP_004421945.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci 6BC]
gi|384450183|ref|YP_005662783.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci 6BC]
gi|384451191|ref|YP_005663789.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci 01DC11]
gi|384452167|ref|YP_005664764.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci 08DC60]
gi|384453141|ref|YP_005665737.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci C19/98]
gi|384454119|ref|YP_005666714.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci 02DC15]
gi|392376297|ref|YP_004064075.1| putative DNA polymerase III epsilon chain [Chlamydophila psittaci
RD1]
gi|406593012|ref|YP_006740191.1| exonuclease, DNA polymerase III subunit epsilon domain-containing
protein [Chlamydia psittaci NJ1]
gi|406594042|ref|YP_006741235.1| exonuclease, DNA polymerase III subunit epsilon domain-containing
protein [Chlamydia psittaci MN]
gi|407453571|ref|YP_006732679.1| exonuclease, DNA polymerase III subunit epsilon domain-containing
protein [Chlamydia psittaci 84/55]
gi|407454905|ref|YP_006733796.1| exonuclease, DNA polymerase III subunit epsilon domain-containing
protein [Chlamydia psittaci GR9]
gi|407456269|ref|YP_006734842.1| exonuclease, DNA polymerase III subunit epsilon domain-containing
protein [Chlamydia psittaci VS225]
gi|407457638|ref|YP_006735943.1| exonuclease, DNA polymerase III subunit epsilon domain-containing
protein [Chlamydia psittaci WS/RT/E30]
gi|407458884|ref|YP_006736987.1| exonuclease, DNA polymerase III subunit epsilon domain-containing
protein [Chlamydia psittaci M56]
gi|407460256|ref|YP_006738031.1| exonuclease, DNA polymerase III subunit epsilon domain-containing
protein [Chlamydia psittaci WC]
gi|410858072|ref|YP_006974012.1| putative DNA polymerase III epsilon chain [Chlamydia psittaci
01DC12]
gi|449070728|ref|YP_007437808.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci Mat116]
gi|313847640|emb|CBY16628.1| putative DNA polymerase III epsilon chain [Chlamydophila psittaci
RD1]
gi|325507354|gb|ADZ18992.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci 6BC]
gi|328815313|gb|EGF85301.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Chlamydophila psittaci Cal10]
gi|328914277|gb|AEB55110.1| DNA polymerase III, epsilon chain [Chlamydophila psittaci 6BC]
gi|334691922|gb|AEG85141.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci C19/98]
gi|334692901|gb|AEG86119.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci 01DC11]
gi|334693876|gb|AEG87093.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci 02DC15]
gi|334694856|gb|AEG88072.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci 08DC60]
gi|405780330|gb|AFS19080.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Chlamydia psittaci 84/55]
gi|405781448|gb|AFS20197.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Chlamydia psittaci GR9]
gi|405782474|gb|AFS21222.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Chlamydia psittaci MN]
gi|405783530|gb|AFS22277.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Chlamydia psittaci VS225]
gi|405784818|gb|AFS23564.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Chlamydia psittaci WS/RT/E30]
gi|405786202|gb|AFS24947.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Chlamydia psittaci M56]
gi|405787407|gb|AFS26151.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Chlamydia psittaci WC]
gi|405788884|gb|AFS27626.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Chlamydia psittaci NJ1]
gi|410810967|emb|CCO01610.1| putative DNA polymerase III epsilon chain [Chlamydia psittaci
01DC12]
gi|449039236|gb|AGE74660.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci Mat116]
Length = 249
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 55/109 (50%), Gaps = 13/109 (11%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
PR+ ++ P + S L G+ ++ ++ FD+ L++E R + + +DTL
Sbjct: 72 PRIAEVFP----KIKSFLKEGD---YIVGHSVGFDLQVLSQEAERIGESFLSKYYVIDTL 124
Query: 68 PLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILE 116
LA+E S SL+AL +F +P +G+ HRAM DV SI +
Sbjct: 125 RLAKEY-----GDSPNNSLEALAVHFNVPYDGN-HRAMKDVEINISIFK 167
>gi|333027027|ref|ZP_08455091.1| putative DNA polymerase III [Streptomyces sp. Tu6071]
gi|332746879|gb|EGJ77320.1| putative DNA polymerase III [Streptomyces sp. Tu6071]
Length = 611
Score = 44.3 bits (103), Expect = 0.018, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 7/84 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+ VAHNA+ FD FLA EF+R + +P R L TL L R++ + L +L
Sbjct: 99 VLVAHNAQ-FDYDFLAHEFARARLYLPVTRR-LCTLALNRQV----DPPTRDMKLDSLAA 152
Query: 92 YFGIPLEGSAHRAMSDVNSLASIL 115
++G+P AH A+ D LA I
Sbjct: 153 HYGVP-RTRAHDALDDTRVLAGIF 175
>gi|375103802|ref|ZP_09750063.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
[Burkholderiales bacterium JOSHI_001]
gi|374664533|gb|EHR69318.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
[Burkholderiales bacterium JOSHI_001]
Length = 212
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 5/101 (4%)
Query: 33 FVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREY 92
VAHNA FD F E R + + F T+ L+R L+ Q + L L Y
Sbjct: 85 LVAHNAA-FDRAFWISEAQRAGLEVQVGAPFACTVRLSRRLIPQ----APNHRLGTLASY 139
Query: 93 FGIPLEGSAHRAMSDVNSLASILERITSDLNFTLSDLLKTS 133
+P G AHRA++D + A +L R+ +L + + T+
Sbjct: 140 CRLPDSGRAHRALADARTAAHLLIRLRQELEERIGSSIPTA 180
>gi|405972135|gb|EKC36922.1| hypothetical protein CGI_10027115 [Crassostrea gigas]
Length = 232
Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 52/94 (55%), Gaps = 6/94 (6%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNI---PDNWRFLDTLPLARELMKQNGSVSSKTSLQA 88
I V HN + FD+P + + SR ++ + F+DTL +A+ K+ +SK +
Sbjct: 132 ILVGHNIQSFDLPVMIHQLSRYNLYTDFQATVYGFIDTLKVAKRTWKKPDVENSKQ--ET 189
Query: 89 LREYFGIPLEGSAHRAMSDVNSLASILERITSDL 122
L + F + L+ AH A++DV SL + +++ +D+
Sbjct: 190 LVKTF-LNLKYDAHNALADVQSLQRLYQKMMADV 222
>gi|424842457|ref|ZP_18267082.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
[Saprospira grandis DSM 2844]
gi|395320655|gb|EJF53576.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
[Saprospira grandis DSM 2844]
Length = 248
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 9/86 (10%)
Query: 33 FVAHNARRFDVPFLAKEFSRCSMNIPD-NWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+N+ FD+P LA+EF+R M P + F+D + L R V+S +
Sbjct: 90 LAGYNSDNFDIPMLAEEFARAGMEYPTPDTHFVDVIKLER-------HVNSHKLGHTYQR 142
Query: 92 YFGIPLEGSAHRAMSDVNSLASILER 117
Y G L AH A++D+ + +ILE+
Sbjct: 143 YTGEELL-DAHDAIADIEATKTILEK 167
>gi|291436367|ref|ZP_06575757.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
gi|291339262|gb|EFE66218.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
Length = 631
Score = 43.9 bits (102), Expect = 0.020, Method: Composition-based stats.
Identities = 32/84 (38%), Positives = 45/84 (53%), Gaps = 7/84 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+ VAHNA+ FD FLA EF+R M +P + R L TL L R++ + L L
Sbjct: 99 VLVAHNAQ-FDYDFLAHEFARARMWLPVSQR-LCTLALNRQV----DPPTDDMKLGTLAA 152
Query: 92 YFGIPLEGSAHRAMSDVNSLASIL 115
++G+ + AH A+ D LA IL
Sbjct: 153 HYGVSRQ-RAHDALDDTRVLAGIL 175
>gi|421862805|ref|ZP_16294509.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|309379715|emb|CBX21704.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 326
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 53/105 (50%), Gaps = 10/105 (9%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
+ +AHN+R FD FL EF R + L ++ L+R L Q K SL ++
Sbjct: 99 CVLIAHNSR-FDYTFLKHEFHRAGIGFSSP--ALCSVQLSRCLYPQ----FYKHSLDSII 151
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILERITSDLNFTLSDLLKTSFR 135
E GI +E HRAM+DV++L LE S+ + + ++ FR
Sbjct: 152 ERLGIVVE-DRHRAMADVSALCDYLEYSLSEHG--VEEWIRQCFR 193
>gi|299144044|ref|ZP_07037124.1| DNA polymerase III, alpha subunit, Gram-positive type
[Peptoniphilus sp. oral taxon 386 str. F0131]
gi|298518529|gb|EFI42268.1| DNA polymerase III, alpha subunit, Gram-positive type
[Peptoniphilus sp. oral taxon 386 str. F0131]
Length = 1421
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 49/85 (57%), Gaps = 8/85 (9%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
++ VAHNA FD+ F+ ++ + N+ N+ LDTL LAR ++K + +L AL
Sbjct: 485 SVLVAHNAG-FDISFIRRDMLK--YNLSFNFTVLDTLSLARAIIKD----IKRFNLTALS 537
Query: 91 EYFGIPLEGSAHRAMSDVNSLASIL 115
+ G+ L +AHRA++D + A +
Sbjct: 538 KKLGVSLV-NAHRAVNDAEATAEVF 561
>gi|154487175|ref|ZP_02028582.1| hypothetical protein BIFADO_01016 [Bifidobacterium adolescentis
L2-32]
gi|154085038|gb|EDN84083.1| exonuclease [Bifidobacterium adolescentis L2-32]
Length = 261
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 33 FVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREY 92
++ HN RRFD+P +A+E R +PD F DT+ L++ L+ Q + L Y
Sbjct: 179 WIGHNIRRFDIPVIAREAQRVGAGMPDV-SFYDTMELSQALLPQ----LDHHRVVDLIRY 233
Query: 93 FGIPLEGSAHRAMSDVNSLASILERI 118
FGI + HRA D A I E +
Sbjct: 234 FGI-AKTERHRAADDAAQTAQIFEHL 258
>gi|56477410|ref|YP_158999.1| excinuclease complex nuclease subunit Cho [Aromatoleum aromaticum
EbN1]
gi|56313453|emb|CAI08098.1| Nuclease subunit Cho of the excinuclease complex (UvrC homolog
protein) [Aromatoleum aromaticum EbN1]
Length = 469
Score = 43.9 bits (102), Expect = 0.022, Method: Composition-based stats.
Identities = 35/97 (36%), Positives = 48/97 (49%), Gaps = 8/97 (8%)
Query: 15 PIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELM 74
P + +S G + A+FVAHNA RFD F+ EFSR + L T+ L+R L
Sbjct: 70 PTFAELADSVRGHLDGAVFVAHNA-RFDYGFIRNEFSRLGQQFEAS--VLCTVKLSRALY 126
Query: 75 KQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSL 111
++ + L AL E G G+ HRAM D + L
Sbjct: 127 PEH----HRHGLDALIERHGFTC-GARHRAMGDTDVL 158
>gi|240014337|ref|ZP_04721250.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae DGI18]
gi|240121900|ref|ZP_04734862.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae PID24-1]
gi|268594593|ref|ZP_06128760.1| DNA polymerase III [Neisseria gonorrhoeae 35/02]
gi|268597081|ref|ZP_06131248.1| DNA polymerase III [Neisseria gonorrhoeae FA19]
gi|268547982|gb|EEZ43400.1| DNA polymerase III [Neisseria gonorrhoeae 35/02]
gi|268550869|gb|EEZ45888.1| DNA polymerase III [Neisseria gonorrhoeae FA19]
Length = 255
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
+ VAHN+R FD FL EF R + L ++ L+R L Q K SL +
Sbjct: 99 CVLVAHNSR-FDYTFLKHEFHRAGIGFSSP--ALCSVQLSRRLYPQ----FYKHSLDGII 151
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILE 116
E GI +E HRAM+DV++L LE
Sbjct: 152 ERLGIVVE-DRHRAMADVSALCDYLE 176
>gi|349687196|ref|ZP_08898338.1| DNA polymerase III, epsilon subunit [Gluconacetobacter oboediens
174Bp2]
Length = 235
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 53/114 (46%), Gaps = 14/114 (12%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
P+ ++ P +++V + +AHNAR FD F+ E SR + D R +DTL
Sbjct: 78 PKFAEIAPDFLEFVGND-------PLIAHNAR-FDFGFMNAELSRARLPELDMGRMVDTL 129
Query: 68 PLARELMKQNGSVSSKTSLQALREYFGIPL-EGSAHRAMSDVNSLASILERITS 120
+ARE SL AL F I L E + H A+ D LA++ +T
Sbjct: 130 DMARERFP-----GMPNSLDALCRRFSIDLSERTTHNALLDCKLLAAVYLELTG 178
>gi|222824026|ref|YP_002575600.1| DNA polymerase III subunit epsilon [Campylobacter lari RM2100]
gi|222539248|gb|ACM64349.1| DNA polymerase III, epsilon subunit [Campylobacter lari RM2100]
Length = 254
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 9/98 (9%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
+IFVAHN R FD F++K + N R L T+ LA++ ++ S K L AL+
Sbjct: 149 SIFVAHNVR-FDYHFISKAMYENDFGVLLNRR-LCTIDLAKKCIE-----SPKYGLDALK 201
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILERITSDLNFTLSD 128
E+ I E HRA+SD + + IL+ + F + +
Sbjct: 202 EFLCI--ESKHHRALSDALAASEILKYCLKKIPFYIKN 237
>gi|254493534|ref|ZP_05106705.1| DNA polymerase III subunit [Neisseria gonorrhoeae 1291]
gi|268681897|ref|ZP_06148759.1| DNA polymerase III subunit [Neisseria gonorrhoeae PID332]
gi|385335496|ref|YP_005889443.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae
TCDC-NG08107]
gi|226512574|gb|EEH61919.1| DNA polymerase III subunit [Neisseria gonorrhoeae 1291]
gi|268622181|gb|EEZ54581.1| DNA polymerase III subunit [Neisseria gonorrhoeae PID332]
gi|317164039|gb|ADV07580.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae
TCDC-NG08107]
Length = 264
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
+ VAHN+R FD FL EF R + L ++ L+R L Q K SL +
Sbjct: 108 CVLVAHNSR-FDYTFLKHEFHRAGIGFSSP--ALCSVQLSRRLYPQ----FYKHSLDGII 160
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILE 116
E GI +E HRAM+DV++L LE
Sbjct: 161 ERLGIVVE-DRHRAMADVSALCDYLE 185
>gi|29839853|ref|NP_828959.1| DNA polymerase III subunit epsilon [Chlamydophila caviae GPIC]
gi|29834200|gb|AAP04837.1| DNA polymerase III, epsilon chain [Chlamydophila caviae GPIC]
Length = 249
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 13/102 (12%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
PR+ ++ P + S L G+ ++ ++ FD+ L +E R + + +DTL
Sbjct: 72 PRIAEVFP----KIKSFLKEGD---YIVGHSVGFDLQVLTQEAERIGESFLSKYYIIDTL 124
Query: 68 PLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVN 109
LA+E S SL+AL +F +P +G+ HRAM DV
Sbjct: 125 RLAKEY-----GDSPNNSLEALAVHFNVPYDGN-HRAMKDVE 160
>gi|268603417|ref|ZP_06137584.1| DNA polymerase III subunit [Neisseria gonorrhoeae PID1]
gi|268587548|gb|EEZ52224.1| DNA polymerase III subunit [Neisseria gonorrhoeae PID1]
Length = 264
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
+ VAHN+R FD FL EF R + L ++ L+R L Q K SL +
Sbjct: 108 CVLVAHNSR-FDYTFLKHEFHRAGIGFSSP--ALCSVQLSRRLYPQ----FYKHSLDGII 160
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILE 116
E GI +E HRAM+DV++L LE
Sbjct: 161 ERLGIVVE-DRHRAMADVSALCDYLE 185
>gi|240016771|ref|ZP_04723311.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae FA6140]
Length = 255
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
+ VAHN+R FD FL EF R + L ++ L+R L Q K SL +
Sbjct: 99 CVLVAHNSR-FDYTFLKHEFHRAGIGFSSP--ALCSVQLSRRLYPQ----FYKHSLDGII 151
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILE 116
E GI +E HRAM+DV++L LE
Sbjct: 152 ERLGIVVE-DRHRAMADVSALCDYLE 176
>gi|194098334|ref|YP_002001392.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae
NCCP11945]
gi|268598740|ref|ZP_06132907.1| DNA polymerase III subunit [Neisseria gonorrhoeae MS11]
gi|193933624|gb|ACF29448.1| putative DNA polymerase III subunit [Neisseria gonorrhoeae
NCCP11945]
gi|268582871|gb|EEZ47547.1| DNA polymerase III subunit [Neisseria gonorrhoeae MS11]
Length = 264
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
+ VAHN+R FD FL EF R + L ++ L+R L Q K SL +
Sbjct: 108 CVLVAHNSR-FDYTFLKHEFHRAGIGFSSP--ALCSVQLSRRLYPQ----FYKHSLDGII 160
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILE 116
E GI +E HRAM+DV++L LE
Sbjct: 161 ERLGIVVE-DRHRAMADVSALCDYLE 185
>gi|229918731|ref|YP_002887377.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Exiguobacterium sp. AT1b]
gi|229470160|gb|ACQ71932.1| DnaQ family exonuclease/DinG family helicase [Exiguobacterium sp.
AT1b]
Length = 936
Score = 43.9 bits (102), Expect = 0.024, Method: Composition-based stats.
Identities = 38/118 (32%), Positives = 58/118 (49%), Gaps = 14/118 (11%)
Query: 5 SYVPRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFL 64
S P ED+IP + K ++ R +FVAHN FD+ FL + + + R +
Sbjct: 65 SDAPTFEDVIPDIWKMLDGR-------VFVAHNVA-FDLTFLNESLEQAGY-LAFQGRAI 115
Query: 65 DTLPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITSDL 122
DT+ LAR L S +L+AL + F + + AHRA+SD + A + R+ L
Sbjct: 116 DTVELARILYPTLES----HALEALSDTFDL-VHTDAHRALSDAEATAELFIRMLDRL 168
>gi|268686367|ref|ZP_06153229.1| DNA polymerase III subunit [Neisseria gonorrhoeae SK-93-1035]
gi|268626651|gb|EEZ59051.1| DNA polymerase III subunit [Neisseria gonorrhoeae SK-93-1035]
Length = 264
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
+ VAHN+R FD FL EF R + L ++ L+R L Q K SL +
Sbjct: 108 CVLVAHNSR-FDYTFLKHEFHRAGIGFSSP--ALCSVQLSRRLYPQ----FYKHSLDGII 160
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILE 116
E GI +E HRAM+DV++L LE
Sbjct: 161 ERLGIVVE-DRHRAMADVSALCDYLE 185
>gi|433492849|ref|ZP_20449939.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Neisseria meningitidis NM586]
gi|432227712|gb|ELK83420.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Neisseria meningitidis NM586]
Length = 461
Score = 43.9 bits (102), Expect = 0.024, Method: Composition-based stats.
Identities = 34/90 (37%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+ VAHN+R FD FL EF R + L ++ L+R L Q K SL ++ E
Sbjct: 100 VLVAHNSR-FDYTFLKHEFHRVGIGFSSP--VLCSVQLSRCLYPQ----FYKHSLDSIIE 152
Query: 92 YFGIPLEGSAHRAMSDVNSLASILERITSD 121
GI +E HRAM+DV++L LE S+
Sbjct: 153 RLGIVVE-DRHRAMADVSALCDYLEYSLSE 181
>gi|433467597|ref|ZP_20425051.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Neisseria meningitidis 87255]
gi|433494976|ref|ZP_20452043.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Neisseria meningitidis NM762]
gi|433497145|ref|ZP_20454180.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Neisseria meningitidis M7089]
gi|433499212|ref|ZP_20456219.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Neisseria meningitidis M7124]
gi|433501179|ref|ZP_20458164.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Neisseria meningitidis NM174]
gi|433503341|ref|ZP_20460301.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Neisseria meningitidis NM126]
gi|432202431|gb|ELK58495.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Neisseria meningitidis 87255]
gi|432229624|gb|ELK85309.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Neisseria meningitidis NM762]
gi|432233230|gb|ELK88862.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Neisseria meningitidis M7089]
gi|432233639|gb|ELK89265.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Neisseria meningitidis M7124]
gi|432235152|gb|ELK90769.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Neisseria meningitidis NM174]
gi|432239651|gb|ELK95199.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Neisseria meningitidis NM126]
Length = 461
Score = 43.9 bits (102), Expect = 0.024, Method: Composition-based stats.
Identities = 34/90 (37%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+ VAHN+R FD FL EF R + L ++ L+R L Q K SL ++ E
Sbjct: 100 VLVAHNSR-FDYTFLKHEFHRVGIGFSSP--VLCSVQLSRCLYPQ----FYKHSLDSIIE 152
Query: 92 YFGIPLEGSAHRAMSDVNSLASILERITSD 121
GI +E HRAM+DV++L LE S+
Sbjct: 153 RLGIVVE-DRHRAMADVSALCDYLEYSLSE 181
>gi|121635139|ref|YP_975384.1| DNA polymerase III subunit [Neisseria meningitidis FAM18]
gi|385340343|ref|YP_005894215.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
meningitidis G2136]
gi|416178477|ref|ZP_11610619.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
meningitidis M6190]
gi|416192464|ref|ZP_11616646.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
meningitidis ES14902]
gi|120866845|emb|CAM10604.1| putative DNA polymerase III subunit [Neisseria meningitidis FAM18]
gi|325132197|gb|EGC54893.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
meningitidis M6190]
gi|325138130|gb|EGC60703.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
meningitidis ES14902]
gi|325198587|gb|ADY94043.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
meningitidis G2136]
Length = 470
Score = 43.9 bits (102), Expect = 0.024, Method: Composition-based stats.
Identities = 34/90 (37%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+ VAHN+R FD FL EF R + L ++ L+R L Q K SL ++ E
Sbjct: 109 VLVAHNSR-FDYTFLKHEFHRVGIGFSSP--VLCSVQLSRCLYPQ----FYKHSLDSIIE 161
Query: 92 YFGIPLEGSAHRAMSDVNSLASILERITSD 121
GI +E HRAM+DV++L LE S+
Sbjct: 162 RLGIVVE-DRHRAMADVSALCDYLEYSLSE 190
>gi|291044082|ref|ZP_06569798.1| DNA polymerase III [Neisseria gonorrhoeae DGI2]
gi|291012545|gb|EFE04534.1| DNA polymerase III [Neisseria gonorrhoeae DGI2]
Length = 264
Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
+ VAHN+R FD FL EF R + L ++ L+R L Q K SL +
Sbjct: 108 CVLVAHNSR-FDYTFLKHEFHRAGIGFSSP--ALCSVQLSRRLYPQ----FYKHSLDGII 160
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILE 116
E GI +E HRAM+DV++L LE
Sbjct: 161 ERLGIVVE-DRHRAMADVSALCDYLE 185
>gi|257125285|ref|YP_003163399.1| DNA polymerase III subunit alpha [Leptotrichia buccalis C-1013-b]
gi|257049224|gb|ACV38408.1| DNA polymerase III, alpha subunit [Leptotrichia buccalis C-1013-b]
Length = 1459
Score = 43.5 bits (101), Expect = 0.026, Method: Composition-based stats.
Identities = 34/94 (36%), Positives = 50/94 (53%), Gaps = 11/94 (11%)
Query: 34 VAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREYF 93
VAHNA+ FDV F+ ++ + + +DTLPLAR L+ + L L +YF
Sbjct: 507 VAHNAK-FDVGFIKQK--TIDQGLEYSPSVIDTLPLARTLLPE----LRGYGLANLVKYF 559
Query: 94 GIPLEGSAHRAMSDVNSLASILERITSDLNFTLS 127
GI LE + HRA+ D + A + ++ LN LS
Sbjct: 560 GITLE-THHRAVDDAKATAEVFQKF---LNMILS 589
>gi|317498937|ref|ZP_07957220.1| DNA polymerase III [Lachnospiraceae bacterium 5_1_63FAA]
gi|316893770|gb|EFV15969.1| DNA polymerase III [Lachnospiraceae bacterium 5_1_63FAA]
Length = 1228
Score = 43.5 bits (101), Expect = 0.026, Method: Composition-based stats.
Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 15/113 (13%)
Query: 10 MEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPL 69
+E+++P +K+ E ++ VAHNA FD F+ + R +N+P + +DTL L
Sbjct: 267 IEEILPQFLKFC-------EGSVLVAHNAG-FDTGFIRENAKR--LNLPYDHTVVDTLGL 316
Query: 70 ARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITSDL 122
AR LM G K +L + ++ I LE + HRA+ D + I S L
Sbjct: 317 ARCLMGHLG----KFTLDNICKHLNIILE-THHRAVDDATATGKIFVEFISML 364
>gi|268684113|ref|ZP_06150975.1| DNA polymerase III subunit [Neisseria gonorrhoeae SK-92-679]
gi|268624397|gb|EEZ56797.1| DNA polymerase III subunit [Neisseria gonorrhoeae SK-92-679]
Length = 264
Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
+ VAHN+R FD FL EF R + L ++ L+R L Q K SL +
Sbjct: 108 CVLVAHNSR-FDYTFLKHEFHRAGIGFSSP--ALCSVQLSRRLYPQ----FYKHSLDGII 160
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILE 116
E GI +E HRAM+DV++L LE
Sbjct: 161 ERLGIVVE-DRHRAMADVSALCDYLE 185
>gi|268601098|ref|ZP_06135265.1| DNA polymerase III subunit [Neisseria gonorrhoeae PID18]
gi|268585229|gb|EEZ49905.1| DNA polymerase III subunit [Neisseria gonorrhoeae PID18]
Length = 264
Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
+ VAHN+R FD FL EF R + L ++ L+R L Q K SL +
Sbjct: 108 CVLVAHNSR-FDYTFLKHEFHRAGIGFSSP--ALCSVQLSRRLYPQ----FYKHSLDGII 160
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILE 116
E GI +E HRAM+DV++L LE
Sbjct: 161 ERLGIVVE-DRHRAMADVSALCDYLE 185
>gi|336395515|ref|ZP_08576914.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus
farciminis KCTC 3681]
Length = 936
Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 59/115 (51%), Gaps = 18/115 (15%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
P E++ P + K + +R +F+AHN FD+ FL +EF R MN N + +DT+
Sbjct: 69 PTFEEVAPDIFKLLKNR-------VFIAHNVN-FDLTFLNREFKRIGMN-QLNVKAIDTV 119
Query: 68 PLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLAS----ILERI 118
L++ L ++SS LQ L Y I + + H A SD + A IL+R+
Sbjct: 120 ELSQILFP---TISS-YKLQDLTRYLSI-VHKNPHSANSDAHVTAELFLVILKRV 169
>gi|283769479|ref|ZP_06342375.1| DNA polymerase III, alpha subunit, Gram-positive type [Bulleidia
extructa W1219]
gi|283103747|gb|EFC05133.1| DNA polymerase III, alpha subunit, Gram-positive type [Bulleidia
extructa W1219]
Length = 1442
Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 48/92 (52%), Gaps = 7/92 (7%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
A+ VAHNA FD PFL +E R S P +DTL +AR ++ S S+ +L+ +
Sbjct: 472 AVLVAHNAS-FDFPFLNEELRRLSRK-PLTNPVIDTLDMARAIL----SDRSRFALEYVS 525
Query: 91 EYFGIPLEGS-AHRAMSDVNSLASILERITSD 121
++ + S AHRA D N LA E + D
Sbjct: 526 NHYKLNYSRSDAHRADYDANILADAFEHLLVD 557
>gi|297194325|ref|ZP_06911723.1| predicted protein [Streptomyces pristinaespiralis ATCC 25486]
gi|297152225|gb|EFH31608.1| predicted protein [Streptomyces pristinaespiralis ATCC 25486]
Length = 658
Score = 43.5 bits (101), Expect = 0.028, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 45/84 (53%), Gaps = 7/84 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+ VAHNA+ FD FLA EF+R +++P R L TL L R + + L L
Sbjct: 99 VLVAHNAQ-FDYDFLAHEFARAGVSLPVARR-LCTLALNRRV----DPPTQDLRLGTLAA 152
Query: 92 YFGIPLEGSAHRAMSDVNSLASIL 115
++G+P + AH A+ D LA +L
Sbjct: 153 HYGVP-QLRAHDALDDTRVLAGVL 175
>gi|345874845|ref|ZP_08826644.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
weaveri LMG 5135]
gi|417957217|ref|ZP_12600143.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
weaveri ATCC 51223]
gi|343968797|gb|EGV37020.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
weaveri ATCC 51223]
gi|343969950|gb|EGV38153.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
weaveri LMG 5135]
Length = 463
Score = 43.5 bits (101), Expect = 0.029, Method: Composition-based stats.
Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 8/86 (9%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
A+ VAHN+R FD FL EF R ++ + T+ L+R L + K +L ++
Sbjct: 99 ALVVAHNSR-FDYTFLCHEFRRAGLDF--GTAAVCTVQLSRSLYPE----FFKHNLDSII 151
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILE 116
E FGI + S HRAM+DV +L +E
Sbjct: 152 ERFGIEAD-SRHRAMTDVLALVDFME 176
>gi|339328594|ref|YP_004688286.1| DNA polymerase III PolC [Cupriavidus necator N-1]
gi|338171195|gb|AEI82248.1| DNA polymerase III PolC [Cupriavidus necator N-1]
Length = 203
Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Query: 34 VAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREYF 93
VAHNA FD F E + M+ P + F T+ +AR + Q + L L +
Sbjct: 87 VAHNAG-FDRRFWQAELAHLGMSAPQS--FACTMLVARRVYPQ----AQNHKLATLAKML 139
Query: 94 GIPLEGSAHRAMSDVNSLASILERITSDLNFT 125
+P+ G AHRAM+D + + R+ D+ T
Sbjct: 140 HLPMAGRAHRAMADAEVTSGLWSRLQHDIAET 171
>gi|386286351|ref|ZP_10063541.1| excinuclease complex nuclease subunit Cho [gamma proteobacterium
BDW918]
gi|385280501|gb|EIF44423.1| excinuclease complex nuclease subunit Cho [gamma proteobacterium
BDW918]
Length = 511
Score = 43.5 bits (101), Expect = 0.029, Method: Composition-based stats.
Identities = 38/109 (34%), Positives = 52/109 (47%), Gaps = 15/109 (13%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
PR D+ + Y++ AI VAHNAR FD FL F+R + R L TL
Sbjct: 88 PRFSDVQEALWSYLDG-------AILVAHNAR-FDAGFLRANFARYGRDYQP--RVLCTL 137
Query: 68 PLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILE 116
LAR L K L+A+ G E HRAM+DV+++ + L+
Sbjct: 138 KLARTLYPD----WPKHGLEAICARIGFYSE-VHHRAMADVDAMKAFLD 181
>gi|416203312|ref|ZP_11620040.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
961-5945]
gi|325142622|gb|EGC65013.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
961-5945]
Length = 405
Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 47/91 (51%), Gaps = 8/91 (8%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
+ VAHN+R FD FL EF R + L ++ L+R L Q K SL ++
Sbjct: 43 CVLVAHNSR-FDYTFLKHEFHRVGIGFSSP--VLCSVQLSRCLYPQ----FYKHSLDSII 95
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILERITSD 121
E GI +E HRAM+DV++L LE S+
Sbjct: 96 ERLGIVVE-DRHRAMADVSALCDYLEYSLSE 125
>gi|145218937|ref|YP_001129646.1| exonuclease, RNase T and DNA polymerase III [Chlorobium
phaeovibrioides DSM 265]
gi|145205101|gb|ABP36144.1| Exonuclease, RNase T and DNA polymerase III [Chlorobium
phaeovibrioides DSM 265]
Length = 194
Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 6/83 (7%)
Query: 40 RFDVPFLA---KEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVS-SKTSLQALREYFGI 95
FD+ FL+ K F + + NWR LD P+ LM G +S LQ ++FG+
Sbjct: 103 HFDLEFLSRMFKRFDQYGLGSFTNWRMLDPQPILN-LMDYMGRISLPNHRLQTACDHFGV 161
Query: 96 PLEGSAHRAMSDVNSLASILERI 118
LE +AH A++D+ + ++++R+
Sbjct: 162 KLE-NAHDALADITATRALMQRL 183
>gi|308177615|ref|YP_003917021.1| DNA polymerase III subunit epsilon [Arthrobacter arilaitensis
Re117]
gi|307745078|emb|CBT76050.1| putative DNA polymerase III subunit epsilon [Arthrobacter
arilaitensis Re117]
Length = 412
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 9/88 (10%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNW--RFLDTLPLARELMKQNGSVSSKTSLQAL 89
+ VAHN FD FL EF +C + +P+ + + + T+ ++ ++ G SLQ
Sbjct: 86 VLVAHNLS-FDSRFLEAEFRKCGLPVPETFLAQGMCTMRMSHRYLQGAGR-----SLQDC 139
Query: 90 REYFGIPLEGSAHRAMSDVNSLASILER 117
+ FGI L+ AH A+ D + A++L R
Sbjct: 140 CDSFGIDLQ-QAHSAVGDATATATLLSR 166
>gi|433537103|ref|ZP_20493605.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Neisseria meningitidis 77221]
gi|432272864|gb|ELL27969.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Neisseria meningitidis 77221]
Length = 461
Score = 43.5 bits (101), Expect = 0.032, Method: Composition-based stats.
Identities = 34/90 (37%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+ VAHN+R FD FL EF R + L ++ L+R L Q K SL ++ E
Sbjct: 100 VLVAHNSR-FDYTFLKHEFHRAGIGFSSP--ALCSVQLSRCLYPQ----FYKHSLDSIIE 152
Query: 92 YFGIPLEGSAHRAMSDVNSLASILERITSD 121
GI +E HRAM+DV++L LE S+
Sbjct: 153 RLGIVVE-DRHRAMADVSALCDYLEYSLSE 181
>gi|433509651|ref|ZP_20466517.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Neisseria meningitidis 12888]
gi|433511658|ref|ZP_20468481.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Neisseria meningitidis 4119]
gi|432246152|gb|ELL01609.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Neisseria meningitidis 12888]
gi|432246419|gb|ELL01867.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Neisseria meningitidis 4119]
Length = 461
Score = 43.5 bits (101), Expect = 0.032, Method: Composition-based stats.
Identities = 34/90 (37%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+ VAHN+R FD FL EF R + L ++ L+R L Q K SL ++ E
Sbjct: 100 VLVAHNSR-FDYTFLKHEFHRAGIGFSSP--ALCSVQLSRCLYPQ----FYKHSLDSIIE 152
Query: 92 YFGIPLEGSAHRAMSDVNSLASILERITSD 121
GI +E HRAM+DV++L LE S+
Sbjct: 153 RLGIVVE-DRHRAMADVSALCDYLEYSLSE 181
>gi|433488733|ref|ZP_20445891.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Neisseria meningitidis M13255]
gi|433505304|ref|ZP_20462242.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Neisseria meningitidis 9506]
gi|433507453|ref|ZP_20464359.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Neisseria meningitidis 9757]
gi|432222599|gb|ELK78390.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Neisseria meningitidis M13255]
gi|432240596|gb|ELK96130.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Neisseria meningitidis 9506]
gi|432240727|gb|ELK96260.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Neisseria meningitidis 9757]
Length = 461
Score = 43.5 bits (101), Expect = 0.032, Method: Composition-based stats.
Identities = 34/90 (37%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+ VAHN+R FD FL EF R + L ++ L+R L Q K SL ++ E
Sbjct: 100 VLVAHNSR-FDYTFLKHEFHRAGIGFSSP--ALCSVQLSRCLYPQ----FYKHSLDSIIE 152
Query: 92 YFGIPLEGSAHRAMSDVNSLASILERITSD 121
GI +E HRAM+DV++L LE S+
Sbjct: 153 RLGIVVE-DRHRAMADVSALCDYLEYSLSE 181
>gi|433465397|ref|ZP_20422878.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Neisseria meningitidis NM422]
gi|433490781|ref|ZP_20447901.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Neisseria meningitidis NM418]
gi|432202596|gb|ELK58655.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Neisseria meningitidis NM422]
gi|432226701|gb|ELK82425.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Neisseria meningitidis NM418]
Length = 479
Score = 43.5 bits (101), Expect = 0.032, Method: Composition-based stats.
Identities = 34/90 (37%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+ VAHN+R FD FL EF R + L ++ L+R L Q K SL ++ E
Sbjct: 100 VLVAHNSR-FDYTFLKHEFHRAGIGFSSP--ALCSVQLSRCLYPQ----FYKHSLDSIIE 152
Query: 92 YFGIPLEGSAHRAMSDVNSLASILERITSD 121
GI +E HRAM+DV++L LE S+
Sbjct: 153 RLGIVVE-DRHRAMADVSALCDYLEYSLSE 181
>gi|433469664|ref|ZP_20427080.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Neisseria meningitidis 98080]
gi|432202518|gb|ELK58579.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Neisseria meningitidis 98080]
Length = 461
Score = 43.5 bits (101), Expect = 0.032, Method: Composition-based stats.
Identities = 34/90 (37%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+ VAHN+R FD FL EF R + L ++ L+R L Q K SL ++ E
Sbjct: 100 VLVAHNSR-FDYTFLKHEFHRAGIGFSSP--ALCSVQLSRCLYPQ----FYKHSLDSIIE 152
Query: 92 YFGIPLEGSAHRAMSDVNSLASILERITSD 121
GI +E HRAM+DV++L LE S+
Sbjct: 153 RLGIVVE-DRHRAMADVSALCDYLEYSLSE 181
>gi|15677307|ref|NP_274462.1| DNA polymerase III subunit epsilon [Neisseria meningitidis MC58]
gi|385852930|ref|YP_005899444.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
meningitidis H44/76]
gi|427827550|ref|ZP_18994582.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Neisseria meningitidis H44/76]
gi|7226692|gb|AAF41810.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis MC58]
gi|316984587|gb|EFV63552.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Neisseria meningitidis H44/76]
gi|325199934|gb|ADY95389.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
meningitidis H44/76]
Length = 470
Score = 43.5 bits (101), Expect = 0.032, Method: Composition-based stats.
Identities = 34/90 (37%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+ VAHN+R FD FL EF R + L ++ L+R L Q K SL ++ E
Sbjct: 109 VLVAHNSR-FDYTFLKHEFHRAGIGFSSP--ALCSVQLSRCLYPQ----FYKHSLDSIIE 161
Query: 92 YFGIPLEGSAHRAMSDVNSLASILERITSD 121
GI +E HRAM+DV++L LE S+
Sbjct: 162 RLGIVVE-DRHRAMADVSALCDYLEYSLSE 190
>gi|218768453|ref|YP_002342965.1| DNA polymerase III subunit [Neisseria meningitidis Z2491]
gi|121052461|emb|CAM08798.1| putative DNA polymerase III subunit [Neisseria meningitidis Z2491]
Length = 470
Score = 43.5 bits (101), Expect = 0.032, Method: Composition-based stats.
Identities = 34/90 (37%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+ VAHN+R FD FL EF R + L ++ L+R L Q K SL ++ E
Sbjct: 109 VLVAHNSR-FDYTFLKHEFHRAGIGFSSP--ALCSVQLSRCLYPQ----FYKHSLDSIIE 161
Query: 92 YFGIPLEGSAHRAMSDVNSLASILERITSD 121
GI +E HRAM+DV++L LE S+
Sbjct: 162 RLGIVVE-DRHRAMADVSALCDYLEYSLSE 190
>gi|421568023|ref|ZP_16013754.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis NM3001]
gi|402342968|gb|EJU78124.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis NM3001]
Length = 461
Score = 43.5 bits (101), Expect = 0.032, Method: Composition-based stats.
Identities = 34/90 (37%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+ VAHN+R FD FL EF R + L ++ L+R L Q K SL ++ E
Sbjct: 100 VLVAHNSR-FDYTFLKHEFHRAGIGFSSP--ALCSVQLSRCLYPQ----FYKHSLDSIIE 152
Query: 92 YFGIPLEGSAHRAMSDVNSLASILERITSD 121
GI +E HRAM+DV++L LE S+
Sbjct: 153 RLGIVVE-DRHRAMADVSALCDYLEYSLSE 181
>gi|421556831|ref|ZP_16002741.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis 80179]
gi|402336085|gb|EJU71347.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis 80179]
Length = 461
Score = 43.5 bits (101), Expect = 0.032, Method: Composition-based stats.
Identities = 34/90 (37%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+ VAHN+R FD FL EF R + L ++ L+R L Q K SL ++ E
Sbjct: 100 VLVAHNSR-FDYTFLKHEFHRAGIGFSSP--ALCSVQLSRCLYPQ----FYKHSLDSIIE 152
Query: 92 YFGIPLEGSAHRAMSDVNSLASILERITSD 121
GI +E HRAM+DV++L LE S+
Sbjct: 153 RLGIVVE-DRHRAMADVSALCDYLEYSLSE 181
>gi|421540709|ref|ZP_15986851.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis 93004]
gi|402318259|gb|EJU53783.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis 93004]
Length = 461
Score = 43.5 bits (101), Expect = 0.032, Method: Composition-based stats.
Identities = 34/90 (37%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+ VAHN+R FD FL EF R + L ++ L+R L Q K SL ++ E
Sbjct: 100 VLVAHNSR-FDYTFLKHEFHRAGIGFSSP--ALCSVQLSRCLYPQ----FYKHSLDSIIE 152
Query: 92 YFGIPLEGSAHRAMSDVNSLASILERITSD 121
GI +E HRAM+DV++L LE S+
Sbjct: 153 RLGIVVE-DRHRAMADVSALCDYLEYSLSE 181
>gi|389605409|emb|CCA44327.1| DNA polymerase III subunit epsilon [Neisseria meningitidis
alpha522]
Length = 461
Score = 43.5 bits (101), Expect = 0.032, Method: Composition-based stats.
Identities = 34/90 (37%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+ VAHN+R FD FL EF R + L ++ L+R L Q K SL ++ E
Sbjct: 100 VLVAHNSR-FDYTFLKHEFHRAGIGFSSP--ALCSVQLSRCLYPQ----FYKHSLDSIIE 152
Query: 92 YFGIPLEGSAHRAMSDVNSLASILERITSD 121
GI +E HRAM+DV++L LE S+
Sbjct: 153 RLGIVVE-DRHRAMADVSALCDYLEYSLSE 181
>gi|418288628|ref|ZP_12901088.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
meningitidis NM233]
gi|372201462|gb|EHP15385.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
meningitidis NM233]
Length = 470
Score = 43.5 bits (101), Expect = 0.032, Method: Composition-based stats.
Identities = 34/90 (37%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+ VAHN+R FD FL EF R + L ++ L+R L Q K SL ++ E
Sbjct: 109 VLVAHNSR-FDYTFLKHEFHRAGIGFSSP--ALCSVQLSRCLYPQ----FYKHSLDSIIE 161
Query: 92 YFGIPLEGSAHRAMSDVNSLASILERITSD 121
GI +E HRAM+DV++L LE S+
Sbjct: 162 RLGIVVE-DRHRAMADVSALCDYLEYSLSE 190
>gi|418290883|ref|ZP_12902978.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
meningitidis NM220]
gi|372200835|gb|EHP14846.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
meningitidis NM220]
Length = 470
Score = 43.5 bits (101), Expect = 0.032, Method: Composition-based stats.
Identities = 34/90 (37%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+ VAHN+R FD FL EF R + L ++ L+R L Q K SL ++ E
Sbjct: 109 VLVAHNSR-FDYTFLKHEFHRAGIGFSSP--ALCSVQLSRCLYPQ----FYKHSLDSIIE 161
Query: 92 YFGIPLEGSAHRAMSDVNSLASILERITSD 121
GI +E HRAM+DV++L LE S+
Sbjct: 162 RLGIVVE-DRHRAMADVSALCDYLEYSLSE 190
>gi|418629094|ref|ZP_13191608.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus
epidermidis VCU127]
gi|374834525|gb|EHR98164.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus
epidermidis VCU127]
Length = 812
Score = 43.5 bits (101), Expect = 0.032, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+FVAHN FD+ F+ K F +C++ R +DTL EL K L AL E
Sbjct: 86 VFVAHNIS-FDLNFIKKAFEKCNIQFKPK-RVMDTL----ELFKIAFPTDKSYQLSALAE 139
Query: 92 YFGIPLEGSAHRAMSDVNSLASIL 115
IPL +AHRA D + A ++
Sbjct: 140 SHHIPLN-NAHRADEDATTTAKLM 162
>gi|385855497|ref|YP_005902010.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
meningitidis M01-240355]
gi|325204438|gb|ADY99891.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
meningitidis M01-240355]
Length = 470
Score = 43.5 bits (101), Expect = 0.032, Method: Composition-based stats.
Identities = 34/90 (37%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+ VAHN+R FD FL EF R + L ++ L+R L Q K SL ++ E
Sbjct: 109 VLVAHNSR-FDYTFLKHEFHRAGIGFSSP--ALCSVQLSRCLYPQ----FYKHSLDSIIE 161
Query: 92 YFGIPLEGSAHRAMSDVNSLASILERITSD 121
GI +E HRAM+DV++L LE S+
Sbjct: 162 RLGIVVE-DRHRAMADVSALCDYLEYSLSE 190
>gi|416196176|ref|ZP_11618022.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
meningitidis CU385]
gi|325140605|gb|EGC63125.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
meningitidis CU385]
Length = 469
Score = 43.5 bits (101), Expect = 0.032, Method: Composition-based stats.
Identities = 34/90 (37%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+ VAHN+R FD FL EF R + L ++ L+R L Q K SL ++ E
Sbjct: 108 VLVAHNSR-FDYTFLKHEFHRAGIGFSSP--ALCSVQLSRCLYPQ----FYKHSLDSIIE 160
Query: 92 YFGIPLEGSAHRAMSDVNSLASILERITSD 121
GI +E HRAM+DV++L LE S+
Sbjct: 161 RLGIVVE-DRHRAMADVSALCDYLEYSLSE 189
>gi|416187276|ref|ZP_11614146.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
meningitidis M0579]
gi|325136504|gb|EGC59108.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
meningitidis M0579]
Length = 469
Score = 43.5 bits (101), Expect = 0.032, Method: Composition-based stats.
Identities = 34/90 (37%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+ VAHN+R FD FL EF R + L ++ L+R L Q K SL ++ E
Sbjct: 108 VLVAHNSR-FDYTFLKHEFHRAGIGFSSP--ALCSVQLSRCLYPQ----FYKHSLDSIIE 160
Query: 92 YFGIPLEGSAHRAMSDVNSLASILERITSD 121
GI +E HRAM+DV++L LE S+
Sbjct: 161 RLGIVVE-DRHRAMADVSALCDYLEYSLSE 189
>gi|385850972|ref|YP_005897487.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
meningitidis M04-240196]
gi|416182641|ref|ZP_11612116.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
meningitidis M13399]
gi|416212872|ref|ZP_11622030.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
meningitidis M01-240013]
gi|325134568|gb|EGC57212.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
meningitidis M13399]
gi|325144729|gb|EGC67024.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
meningitidis M01-240013]
gi|325205795|gb|ADZ01248.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
meningitidis M04-240196]
Length = 470
Score = 43.5 bits (101), Expect = 0.032, Method: Composition-based stats.
Identities = 34/90 (37%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+ VAHN+R FD FL EF R + L ++ L+R L Q K SL ++ E
Sbjct: 109 VLVAHNSR-FDYTFLKHEFHRAGIGFSSP--ALCSVQLSRCLYPQ----FYKHSLDSIIE 161
Query: 92 YFGIPLEGSAHRAMSDVNSLASILERITSD 121
GI +E HRAM+DV++L LE S+
Sbjct: 162 RLGIVVE-DRHRAMADVSALCDYLEYSLSE 190
>gi|416169877|ref|ZP_11608237.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
meningitidis OX99.30304]
gi|325130506|gb|EGC53261.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
meningitidis OX99.30304]
Length = 470
Score = 43.5 bits (101), Expect = 0.032, Method: Composition-based stats.
Identities = 34/90 (37%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+ VAHN+R FD FL EF R + L ++ L+R L Q K SL ++ E
Sbjct: 109 VLVAHNSR-FDYTFLKHEFHRAGIGFSSP--ALCSVQLSRCLYPQ----FYKHSLDSIIE 161
Query: 92 YFGIPLEGSAHRAMSDVNSLASILERITSD 121
GI +E HRAM+DV++L LE S+
Sbjct: 162 RLGIVVE-DRHRAMADVSALCDYLEYSLSE 190
>gi|385338284|ref|YP_005892157.1| putative DnaQ-like exonuclease [Neisseria meningitidis WUE 2594]
gi|421551067|ref|ZP_15997067.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
meningitidis 69166]
gi|421555105|ref|ZP_16001043.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
meningitidis 98008]
gi|433471862|ref|ZP_20429245.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Neisseria meningitidis 68094]
gi|433475872|ref|ZP_20433209.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Neisseria meningitidis 88050]
gi|433477896|ref|ZP_20435214.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Neisseria meningitidis 70012]
gi|433480119|ref|ZP_20437406.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Neisseria meningitidis 63041]
gi|433513770|ref|ZP_20470559.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Neisseria meningitidis 63049]
gi|433515188|ref|ZP_20471961.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Neisseria meningitidis 2004090]
gi|433518614|ref|ZP_20475349.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Neisseria meningitidis 96023]
gi|433520227|ref|ZP_20476945.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Neisseria meningitidis 65014]
gi|433522175|ref|ZP_20478862.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Neisseria meningitidis 61103]
gi|433524442|ref|ZP_20481100.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Neisseria meningitidis 97020]
gi|433526274|ref|ZP_20482904.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Neisseria meningitidis 69096]
gi|433528522|ref|ZP_20485131.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Neisseria meningitidis NM3652]
gi|433530730|ref|ZP_20487314.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Neisseria meningitidis NM3642]
gi|433532992|ref|ZP_20489554.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Neisseria meningitidis 2007056]
gi|433534774|ref|ZP_20491312.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Neisseria meningitidis 2001212]
gi|433539228|ref|ZP_20495703.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Neisseria meningitidis 70030]
gi|433541307|ref|ZP_20497756.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Neisseria meningitidis 63006]
gi|319410698|emb|CBY91078.1| putative DnaQ-like exonuclease [Neisseria meningitidis WUE 2594]
gi|402328601|gb|EJU63968.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
meningitidis 69166]
gi|402331501|gb|EJU66835.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
meningitidis 98008]
gi|432207819|gb|ELK63807.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Neisseria meningitidis 68094]
gi|432208981|gb|ELK64952.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Neisseria meningitidis 88050]
gi|432214712|gb|ELK70608.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Neisseria meningitidis 70012]
gi|432215079|gb|ELK70970.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Neisseria meningitidis 63041]
gi|432247079|gb|ELL02522.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Neisseria meningitidis 63049]
gi|432251134|gb|ELL06506.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Neisseria meningitidis 96023]
gi|432253765|gb|ELL09104.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Neisseria meningitidis 65014]
gi|432254984|gb|ELL10317.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Neisseria meningitidis 2004090]
gi|432258553|gb|ELL13835.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Neisseria meningitidis 61103]
gi|432258669|gb|ELL13950.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Neisseria meningitidis 97020]
gi|432261038|gb|ELL16295.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Neisseria meningitidis 69096]
gi|432265323|gb|ELL20519.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Neisseria meningitidis NM3652]
gi|432265540|gb|ELL20732.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Neisseria meningitidis NM3642]
gi|432266348|gb|ELL21534.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Neisseria meningitidis 2007056]
gi|432271043|gb|ELL26173.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Neisseria meningitidis 2001212]
gi|432272951|gb|ELL28053.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Neisseria meningitidis 70030]
gi|432276954|gb|ELL32006.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Neisseria meningitidis 63006]
Length = 461
Score = 43.5 bits (101), Expect = 0.032, Method: Composition-based stats.
Identities = 34/90 (37%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+ VAHN+R FD FL EF R + L ++ L+R L Q K SL ++ E
Sbjct: 100 VLVAHNSR-FDYTFLKHEFHRAGIGFSSP--ALCSVQLSRCLYPQ----FYKHSLDSIIE 152
Query: 92 YFGIPLEGSAHRAMSDVNSLASILERITSD 121
GI +E HRAM+DV++L LE S+
Sbjct: 153 RLGIVVE-DRHRAMADVSALCDYLEYSLSE 181
>gi|313668201|ref|YP_004048485.1| DNA polymerase III subunit [Neisseria lactamica 020-06]
gi|313005663|emb|CBN87106.1| putative DNA polymerase III subunit [Neisseria lactamica 020-06]
Length = 470
Score = 43.5 bits (101), Expect = 0.032, Method: Composition-based stats.
Identities = 34/90 (37%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+ VAHN+R FD FL EF R + L ++ L+R L Q K SL ++ E
Sbjct: 109 VLVAHNSR-FDYTFLKHEFHRAGIGFSSP--ALCSVQLSRCLYPQ----FYKHSLDSIIE 161
Query: 92 YFGIPLEGSAHRAMSDVNSLASILERITSD 121
GI +E HRAM+DV++L LE S+
Sbjct: 162 RLGIVVE-DRHRAMADVSALCDYLEYSLSE 190
>gi|385328291|ref|YP_005882594.1| DNA polymerase III subunit epsilon [Neisseria meningitidis
alpha710]
gi|308389143|gb|ADO31463.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
alpha710]
Length = 461
Score = 43.5 bits (101), Expect = 0.032, Method: Composition-based stats.
Identities = 34/90 (37%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+ VAHN+R FD FL EF R + L ++ L+R L Q K SL ++ E
Sbjct: 100 VLVAHNSR-FDYTFLKHEFHRAGIGFSSP--ALCSVQLSRCLYPQ----FYKHSLDSIIE 152
Query: 92 YFGIPLEGSAHRAMSDVNSLASILERITSD 121
GI +E HRAM+DV++L LE S+
Sbjct: 153 RLGIVVE-DRHRAMADVSALCDYLEYSLSE 181
>gi|385323901|ref|YP_005878340.1| putative DnaQ-like exonuclease [Neisseria meningitidis 8013]
gi|261392288|emb|CAX49811.1| putative DnaQ-like exonuclease [Neisseria meningitidis 8013]
Length = 470
Score = 43.5 bits (101), Expect = 0.032, Method: Composition-based stats.
Identities = 34/90 (37%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+ VAHN+R FD FL EF R + L ++ L+R L Q K SL ++ E
Sbjct: 109 VLVAHNSR-FDYTFLKHEFHRAGIGFSSP--ALCSVQLSRCLYPQ----FYKHSLDSIIE 161
Query: 92 YFGIPLEGSAHRAMSDVNSLASILERITSD 121
GI +E HRAM+DV++L LE S+
Sbjct: 162 RLGIVVE-DRHRAMADVSALCDYLEYSLSE 190
>gi|421561528|ref|ZP_16007370.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Neisseria meningitidis NM2657]
gi|254670274|emb|CBA05558.1| DNA polymerase III alpha subunit, the Gram-positive type [Neisseria
meningitidis alpha153]
gi|402337824|gb|EJU73070.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Neisseria meningitidis NM2657]
Length = 461
Score = 43.5 bits (101), Expect = 0.032, Method: Composition-based stats.
Identities = 34/90 (37%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+ VAHN+R FD FL EF R + L ++ L+R L Q K SL ++ E
Sbjct: 100 VLVAHNSR-FDYTFLKHEFHRAGIGFSSP--ALCSVQLSRCLYPQ----FYKHSLDSIIE 152
Query: 92 YFGIPLEGSAHRAMSDVNSLASILERITSD 121
GI +E HRAM+DV++L LE S+
Sbjct: 153 RLGIVVE-DRHRAMADVSALCDYLEYSLSE 181
>gi|418468676|ref|ZP_13039453.1| DNA polymerase III, partial [Streptomyces coelicoflavus ZG0656]
gi|371550718|gb|EHN78089.1| DNA polymerase III, partial [Streptomyces coelicoflavus ZG0656]
Length = 643
Score = 43.1 bits (100), Expect = 0.033, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 7/84 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+ VAHNA+ FD FLA EF+R + +P R L TL L R + + L L
Sbjct: 108 VLVAHNAQ-FDYDFLAHEFARARLRLPVARR-LCTLALNRRV----DPPTDDLRLGTLAA 161
Query: 92 YFGIPLEGSAHRAMSDVNSLASIL 115
++G+P + AH A+ D LA +L
Sbjct: 162 HYGVP-QLKAHDALDDTRVLAGVL 184
>gi|418606636|ref|ZP_13169906.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus
epidermidis VCU057]
gi|374407412|gb|EHQ78274.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus
epidermidis VCU057]
Length = 871
Score = 43.1 bits (100), Expect = 0.033, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+FVAHN FD+ F+ K F +C++ R +DTL EL K L AL E
Sbjct: 86 VFVAHNIS-FDLNFIKKAFEKCNIQFKPK-RVMDTL----ELFKIAFPTDKSYQLSALAE 139
Query: 92 YFGIPLEGSAHRAMSDVNSLASIL 115
IPL +AHRA D + A ++
Sbjct: 140 SHHIPLN-NAHRADEDATTTAKLM 162
>gi|418327917|ref|ZP_12939049.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus
epidermidis 14.1.R1.SE]
gi|365232476|gb|EHM73472.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus
epidermidis 14.1.R1.SE]
Length = 871
Score = 43.1 bits (100), Expect = 0.033, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+FVAHN FD+ F+ K F +C++ R +DTL EL K L AL E
Sbjct: 86 VFVAHNIS-FDLNFIKKAFEKCNIQFKPK-RVMDTL----ELFKIAFPTDKSYQLSALAE 139
Query: 92 YFGIPLEGSAHRAMSDVNSLASIL 115
IPL +AHRA D + A ++
Sbjct: 140 SHHIPLN-NAHRADEDATTTAKLM 162
>gi|2257567|dbj|BAA21459.1| pi077 [Schizosaccharomyces pombe]
Length = 231
Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 45/80 (56%), Gaps = 9/80 (11%)
Query: 45 FLAKEFSRCSMNIPDNW---RFLDTLPLARELMKQNGSVSSKTSLQALREYFGIPLEGSA 101
FLAK+F M IPD W F+D +++ + +T++ + E++G+ EGS
Sbjct: 128 FLAKQFKYDKMPIPD-WIKGPFVDIRSFYKDVYR-----VPRTNINGMLEHWGLQFEGSE 181
Query: 102 HRAMSDVNSLASILERITSD 121
HR + D +L+ I++++ S+
Sbjct: 182 HRGIDDARNLSRIVKKMCSE 201
>gi|385857509|ref|YP_005904021.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
meningitidis NZ-05/33]
gi|325208398|gb|ADZ03850.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
meningitidis NZ-05/33]
Length = 469
Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 47/91 (51%), Gaps = 8/91 (8%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
+ VAHN+R FD FL EF R + L ++ L+R L Q K SL ++
Sbjct: 107 CVLVAHNSR-FDYTFLKHEFHRAGIGFSSP--ALCSVQLSRCLYPQ----FYKHSLDSII 159
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILERITSD 121
E GI +E HRAM+DV++L LE S+
Sbjct: 160 ERLGIVVE-DRHRAMADVSALCDYLEYSLSE 189
>gi|31747869|gb|AAN10194.1| DNA polymerase III epsilon subunit [Candidatus Fritschea bemisiae]
Length = 249
Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 70/135 (51%), Gaps = 24/135 (17%)
Query: 1 MVNRSYVPRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPD- 59
MV +S P++ ++I + ++ GE +I V H FD+ L E R +P
Sbjct: 67 MVQKS--PKINEVIQSYLDFI------GE-SIVVGHGIP-FDLALLEAEAKRAG--VPSR 114
Query: 60 --NWRFLDTLPLARELMKQNGSVSSKTSLQALREYFGIPLEG-SAHRAMSDVNSLASILE 116
N R+LDTL LAR + S SL++LR++F I +G +AHRAMSDV + +
Sbjct: 115 LLNQRYLDTLRLARLYGE-----SPTNSLESLRKHFNI--QGINAHRAMSDVLVNIDVFK 167
Query: 117 RITSDLNFTLSDLLK 131
++ N T+ +L K
Sbjct: 168 YLSQGFN-TVEELFK 181
>gi|71657888|ref|XP_817452.1| mitochondrial DNA polymerase I protein B [Trypanosoma cruzi strain
CL Brener]
gi|70882645|gb|EAN95601.1| mitochondrial DNA polymerase I protein B, putative [Trypanosoma
cruzi]
Length = 1417
Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 59/125 (47%), Gaps = 18/125 (14%)
Query: 8 PRMEDLIPIVIKYV---NSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFL 64
PR+ ++ + +Y+ +++ P E+ + + HN D P L + F R + + DN F
Sbjct: 835 PRLPEVTRALARYLRLDEAQIDPNEVVVLIGHNVFALDEPLLRRAFEREGVCM-DNILFC 893
Query: 65 DTLPLARELMKQ-NGS-------------VSSKTSLQALREYFGIPLEGSAHRAMSDVNS 110
D+L L + L ++ GS +++ L +L E + +G HRA +D +
Sbjct: 894 DSLVLLKALKRELQGSTENPRVDRGVLETLTTSLRLSSLVEGLHVEADGLLHRADTDAKT 953
Query: 111 LASIL 115
L +L
Sbjct: 954 LWFVL 958
>gi|407855973|gb|EKG06705.1| mitochondrial DNA polymerase I protein B, putative [Trypanosoma
cruzi]
Length = 1417
Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 59/125 (47%), Gaps = 18/125 (14%)
Query: 8 PRMEDLIPIVIKYV---NSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFL 64
PR+ ++ + +Y+ +++ P E+ + + HN D P L + F R + + DN F
Sbjct: 835 PRLPEVTRALARYLRLDEAQIDPNEVVVLIGHNVFALDEPLLRRAFEREGVCM-DNILFC 893
Query: 65 DTLPLARELMKQ-NGS-------------VSSKTSLQALREYFGIPLEGSAHRAMSDVNS 110
D+L L + L ++ GS +++ L +L E + +G HRA +D +
Sbjct: 894 DSLVLLKALKRELQGSTENPRVDRGVLETLTTSLRLSSLVEGLHVEADGLLHRADTDAKT 953
Query: 111 LASIL 115
L +L
Sbjct: 954 LWFVL 958
>gi|162312186|ref|XP_001713129.1| double-strand siRNA ribonuclease Eri1 [Schizosaccharomyces pombe
972h-]
gi|121732820|sp|Q08I43.1|ERI1_SCHPO RecName: Full=3'-5' exonuclease eri1; AltName: Full=Enhanced RNAi
protein
gi|115345157|emb|CAL48264.1| double-strand siRNA ribonuclease Eri1 [Schizosaccharomyces pombe]
Length = 313
Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 45/80 (56%), Gaps = 9/80 (11%)
Query: 45 FLAKEFSRCSMNIPDNW---RFLDTLPLARELMKQNGSVSSKTSLQALREYFGIPLEGSA 101
FLAK+F M IPD W F+D +++ + +T++ + E++G+ EGS
Sbjct: 210 FLAKQFKYDKMPIPD-WIKGPFVDIRSFYKDVYR-----VPRTNINGMLEHWGLQFEGSE 263
Query: 102 HRAMSDVNSLASILERITSD 121
HR + D +L+ I++++ S+
Sbjct: 264 HRGIDDARNLSRIVKKMCSE 283
>gi|433473839|ref|ZP_20431199.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Neisseria meningitidis 97021]
gi|433481357|ref|ZP_20438624.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Neisseria meningitidis 2006087]
gi|433484387|ref|ZP_20441611.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Neisseria meningitidis 2002038]
gi|433486659|ref|ZP_20443851.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Neisseria meningitidis 97014]
gi|432209300|gb|ELK65269.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Neisseria meningitidis 97021]
gi|432218114|gb|ELK73977.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Neisseria meningitidis 2006087]
gi|432220318|gb|ELK76141.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Neisseria meningitidis 2002038]
gi|432221178|gb|ELK76991.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Neisseria meningitidis 97014]
Length = 461
Score = 43.1 bits (100), Expect = 0.036, Method: Composition-based stats.
Identities = 34/90 (37%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+ VAHN+R FD FL EF R + L ++ L+R L Q K SL ++ E
Sbjct: 100 VLVAHNSR-FDYTFLKHEFHRVGIGFSSP--ALCSVQLSRCLYPQ----FYKHSLDSIIE 152
Query: 92 YFGIPLEGSAHRAMSDVNSLASILERITSD 121
GI +E HRAM+DV++L LE S+
Sbjct: 153 RLGIVVE-DRHRAMADVSALCDYLEYSLSE 181
>gi|421559621|ref|ZP_16005494.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis 92045]
gi|402335420|gb|EJU70686.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis 92045]
Length = 461
Score = 43.1 bits (100), Expect = 0.036, Method: Composition-based stats.
Identities = 34/90 (37%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+ VAHN+R FD FL EF R + L ++ L+R L Q K SL ++ E
Sbjct: 100 VLVAHNSR-FDYTFLKHEFHRVGIGFSSP--ALCSVQLSRCLYPQ----FYKHSLDSIIE 152
Query: 92 YFGIPLEGSAHRAMSDVNSLASILERITSD 121
GI +E HRAM+DV++L LE S+
Sbjct: 153 RLGIVVE-DRHRAMADVSALCDYLEYSLSE 181
>gi|421544773|ref|ZP_15990846.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
meningitidis NM140]
gi|421546861|ref|ZP_15992903.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
meningitidis NM183]
gi|421549108|ref|ZP_15995130.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
meningitidis NM2781]
gi|421553076|ref|ZP_15999045.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
meningitidis NM576]
gi|421563650|ref|ZP_16009466.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
meningitidis NM2795]
gi|421907212|ref|ZP_16337097.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
alpha704]
gi|393291729|emb|CCI73084.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
alpha704]
gi|402322505|gb|EJU57963.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
meningitidis NM183]
gi|402322686|gb|EJU58137.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
meningitidis NM140]
gi|402324929|gb|EJU60351.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
meningitidis NM2781]
gi|402329589|gb|EJU64949.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
meningitidis NM576]
gi|402340135|gb|EJU75338.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
meningitidis NM2795]
Length = 461
Score = 43.1 bits (100), Expect = 0.036, Method: Composition-based stats.
Identities = 34/90 (37%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+ VAHN+R FD FL EF R + L ++ L+R L Q K SL ++ E
Sbjct: 100 VLVAHNSR-FDYTFLKHEFHRVGIGFSSP--ALCSVQLSRCLYPQ----FYKHSLDSIIE 152
Query: 92 YFGIPLEGSAHRAMSDVNSLASILERITSD 121
GI +E HRAM+DV++L LE S+
Sbjct: 153 RLGIVVE-DRHRAMADVSALCDYLEYSLSE 181
>gi|416160979|ref|ZP_11606268.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
meningitidis N1568]
gi|325128513|gb|EGC51390.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
meningitidis N1568]
Length = 470
Score = 43.1 bits (100), Expect = 0.036, Method: Composition-based stats.
Identities = 34/90 (37%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+ VAHN+R FD FL EF R + L ++ L+R L Q K SL ++ E
Sbjct: 109 VLVAHNSR-FDYTFLKHEFHRVGIGFSSP--ALCSVQLSRCLYPQ----FYKHSLDSIIE 161
Query: 92 YFGIPLEGSAHRAMSDVNSLASILERITSD 121
GI +E HRAM+DV++L LE S+
Sbjct: 162 RLGIVVE-DRHRAMADVSALCDYLEYSLSE 190
>gi|304387160|ref|ZP_07369404.1| epsilon subunit family exonuclease [Neisseria meningitidis ATCC
13091]
gi|385341644|ref|YP_005895515.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
meningitidis M01-240149]
gi|304338764|gb|EFM04874.1| epsilon subunit family exonuclease [Neisseria meningitidis ATCC
13091]
gi|325201850|gb|ADY97304.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
meningitidis M01-240149]
Length = 470
Score = 43.1 bits (100), Expect = 0.036, Method: Composition-based stats.
Identities = 34/90 (37%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+ VAHN+R FD FL EF R + L ++ L+R L Q K SL ++ E
Sbjct: 109 VLVAHNSR-FDYTFLKHEFHRVGIGFSSP--ALCSVQLSRCLYPQ----FYKHSLDSIIE 161
Query: 92 YFGIPLEGSAHRAMSDVNSLASILERITSD 121
GI +E HRAM+DV++L LE S+
Sbjct: 162 RLGIVVE-DRHRAMADVSALCDYLEYSLSE 190
>gi|254805232|ref|YP_003083453.1| putative DNA polymerase III subunit [Neisseria meningitidis
alpha14]
gi|254668774|emb|CBA06684.1| putative DNA polymerase III subunit [Neisseria meningitidis
alpha14]
Length = 461
Score = 43.1 bits (100), Expect = 0.036, Method: Composition-based stats.
Identities = 34/90 (37%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+ VAHN+R FD FL EF R + L ++ L+R L Q K SL ++ E
Sbjct: 100 VLVAHNSR-FDYTFLKHEFHRVGIGFSSP--ALCSVQLSRCLYPQ----FYKHSLDSIIE 152
Query: 92 YFGIPLEGSAHRAMSDVNSLASILERITSD 121
GI +E HRAM+DV++L LE S+
Sbjct: 153 RLGIVVE-DRHRAMADVSALCDYLEYSLSE 181
>gi|161870321|ref|YP_001599491.1| putative DNA polymerase III subunit [Neisseria meningitidis 053442]
gi|161595874|gb|ABX73534.1| putative DNA polymerase III subunit [Neisseria meningitidis 053442]
Length = 461
Score = 43.1 bits (100), Expect = 0.036, Method: Composition-based stats.
Identities = 34/90 (37%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+ VAHN+R FD FL EF R + L ++ L+R L Q K SL ++ E
Sbjct: 100 VLVAHNSR-FDYTFLKHEFHRVGIGFSSP--ALCSVQLSRCLYPQ----FYKHSLDSIIE 152
Query: 92 YFGIPLEGSAHRAMSDVNSLASILERITSD 121
GI +E HRAM+DV++L LE S+
Sbjct: 153 RLGIVVE-DRHRAMADVSALCDYLEYSLSE 181
>gi|71414478|ref|XP_809340.1| mitochondrial DNA polymerase I protein B [Trypanosoma cruzi strain CL
Brener]
gi|70873706|gb|EAN87489.1| mitochondrial DNA polymerase I protein B, putative [Trypanosoma
cruzi]
Length = 1473
Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 59/125 (47%), Gaps = 18/125 (14%)
Query: 8 PRMEDLIPIVIKYV---NSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFL 64
PR+ ++ + +Y+ +++ P E+ + + HN D P L + F R + + DN F
Sbjct: 891 PRLPEVTRALARYLRLDEAQIDPNEVVVLIGHNVFALDEPLLRRAFEREGVCM-DNILFC 949
Query: 65 DTLPLARELMKQ-NGS-------------VSSKTSLQALREYFGIPLEGSAHRAMSDVNS 110
D+L L + L ++ GS +++ L +L E + +G HRA +D +
Sbjct: 950 DSLVLLKALKRELQGSTENPRVDRGVLETLTTSLRLSSLVEGLHVEADGLLHRADTDAKT 1009
Query: 111 LASIL 115
L +L
Sbjct: 1010 LWFVL 1014
>gi|420211699|ref|ZP_14717057.1| putative DnaQ family exonuclease/DinG family helicase
[Staphylococcus epidermidis NIHLM001]
gi|394280653|gb|EJE24928.1| putative DnaQ family exonuclease/DinG family helicase
[Staphylococcus epidermidis NIHLM001]
Length = 902
Score = 43.1 bits (100), Expect = 0.037, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+FVAHN FD+ F+ K F +C++ R +DTL EL K L AL E
Sbjct: 86 VFVAHNIS-FDLNFIKKAFEKCNIQFKPK-RVMDTL----ELFKIAFPTDKSYQLSALAE 139
Query: 92 YFGIPLEGSAHRAMSDVNSLASIL 115
IPL +AHRA D + A ++
Sbjct: 140 SHHIPLN-NAHRADEDATTTAKLM 162
>gi|418616461|ref|ZP_13179386.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus
epidermidis VCU120]
gi|374821287|gb|EHR85354.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus
epidermidis VCU120]
Length = 902
Score = 43.1 bits (100), Expect = 0.037, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+FVAHN FD+ F+ K F +C++ R +DTL EL K L AL E
Sbjct: 86 VFVAHNIS-FDLNFIKKAFEKCNIQFKPK-RVMDTL----ELFKIAFPTDKSYQLSALAE 139
Query: 92 YFGIPLEGSAHRAMSDVNSLASIL 115
IPL +AHRA D + A ++
Sbjct: 140 SHHIPLN-NAHRADEDATTTAKLM 162
>gi|418325628|ref|ZP_12936834.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus
epidermidis VCU071]
gi|365228230|gb|EHM69415.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus
epidermidis VCU071]
Length = 902
Score = 43.1 bits (100), Expect = 0.037, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+FVAHN FD+ F+ K F +C++ R +DTL EL K L AL E
Sbjct: 86 VFVAHNIS-FDLNFIKKAFEKCNIQFKPK-RVMDTL----ELFKIAFPTDKSYQLSALAE 139
Query: 92 YFGIPLEGSAHRAMSDVNSLASIL 115
IPL +AHRA D + A ++
Sbjct: 140 SHHIPLN-NAHRADEDATTTAKLM 162
>gi|83944955|ref|ZP_00957321.1| DNA polymerase III, epsilon subunit [Oceanicaulis sp. HTCC2633]
gi|83851737|gb|EAP89592.1| DNA polymerase III, epsilon subunit [Oceanicaulis sp. HTCC2633]
Length = 236
Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 50/105 (47%), Gaps = 11/105 (10%)
Query: 29 EIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQA 88
E + VAHNA FD+ F+ E RC I RF+DT +ARE + SL A
Sbjct: 84 EDSTLVAHNAM-FDMGFINMELERCGKPIIPKARFIDTAAIAREKFP-----GAPASLDA 137
Query: 89 LREYFGIPLEG-SAHRAMSDVNSLASILERITSD----LNFTLSD 128
L + F + L+ + H A+ D LA + + L+FT SD
Sbjct: 138 LCKRFDVSLDSRTKHGALIDSYLLAEVYLELNGGREQSLSFTGSD 182
>gi|420206219|ref|ZP_14711729.1| putative DnaQ family exonuclease/DinG family helicase
[Staphylococcus epidermidis NIHLM008]
gi|394278058|gb|EJE22375.1| putative DnaQ family exonuclease/DinG family helicase
[Staphylococcus epidermidis NIHLM008]
Length = 902
Score = 43.1 bits (100), Expect = 0.037, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+FVAHN FD+ F+ K F +C++ R +DTL EL K L AL E
Sbjct: 86 VFVAHNIS-FDLNFIKKAFEKCNIQFKPK-RVMDTL----ELFKIAFPTDKSYQLSALAE 139
Query: 92 YFGIPLEGSAHRAMSDVNSLASIL 115
IPL +AHRA D + A ++
Sbjct: 140 SHHIPLN-NAHRADEDATTTAKLM 162
>gi|379731568|ref|YP_005323764.1| exonuclease RNase T and DNA polymerase III [Saprospira grandis str.
Lewin]
gi|378577179|gb|AFC26180.1| exonuclease RNase T and DNA polymerase III [Saprospira grandis str.
Lewin]
Length = 206
Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 5/97 (5%)
Query: 27 PGEIA-IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLAR---ELMKQNGSVSS 82
PG + + V + +D+ FL + P +++ +D A L+++NG +S
Sbjct: 98 PGALKRLVVCGQSVHYDINFLRFAYMDLKQPYPFSFKTIDLYQQAYFLFRLLRENGQPTS 157
Query: 83 KT-SLQALREYFGIPLEGSAHRAMSDVNSLASILERI 118
K SL AL EYFG+ EG H A+ D A+ L+ +
Sbjct: 158 KGLSLGALSEYFGLQREGDMHNALEDAELTAACLKEV 194
>gi|27468061|ref|NP_764698.1| dinG protein [Staphylococcus epidermidis ATCC 12228]
gi|57866955|ref|YP_188602.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
[Staphylococcus epidermidis RP62A]
gi|251810883|ref|ZP_04825356.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
epidermidis BCM-HMP0060]
gi|282876111|ref|ZP_06284978.1| putative DnaQ family exonuclease/DinG family helicase
[Staphylococcus epidermidis SK135]
gi|293366576|ref|ZP_06613253.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
epidermidis M23864:W2(grey)]
gi|417647032|ref|ZP_12296881.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus
epidermidis VCU144]
gi|417656215|ref|ZP_12305906.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus
epidermidis VCU028]
gi|417659617|ref|ZP_12309217.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus
epidermidis VCU045]
gi|417908749|ref|ZP_12552506.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus
epidermidis VCU037]
gi|417912187|ref|ZP_12555882.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus
epidermidis VCU105]
gi|417913687|ref|ZP_12557350.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus
epidermidis VCU109]
gi|418605711|ref|ZP_13169018.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus
epidermidis VCU041]
gi|418609617|ref|ZP_13172753.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus
epidermidis VCU065]
gi|418621862|ref|ZP_13184627.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus
epidermidis VCU123]
gi|418625133|ref|ZP_13187791.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus
epidermidis VCU125]
gi|418627807|ref|ZP_13190377.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus
epidermidis VCU126]
gi|418664582|ref|ZP_13226050.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus
epidermidis VCU081]
gi|419769639|ref|ZP_14295733.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus aureus
subsp. aureus IS-250]
gi|419771883|ref|ZP_14297929.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus aureus
subsp. aureus IS-K]
gi|420165461|ref|ZP_14672152.1| putative DnaQ family exonuclease/DinG family helicase
[Staphylococcus epidermidis NIHLM088]
gi|420170176|ref|ZP_14676737.1| putative DnaQ family exonuclease/DinG family helicase
[Staphylococcus epidermidis NIHLM070]
gi|420172515|ref|ZP_14679014.1| putative DnaQ family exonuclease/DinG family helicase
[Staphylococcus epidermidis NIHLM067]
gi|420183126|ref|ZP_14689259.1| putative DnaQ family exonuclease/DinG family helicase
[Staphylococcus epidermidis NIHLM049]
gi|420187334|ref|ZP_14693355.1| putative DnaQ family exonuclease/DinG family helicase
[Staphylococcus epidermidis NIHLM039]
gi|420194761|ref|ZP_14700558.1| putative DnaQ family exonuclease/DinG family helicase
[Staphylococcus epidermidis NIHLM021]
gi|420197343|ref|ZP_14703067.1| putative DnaQ family exonuclease/DinG family helicase
[Staphylococcus epidermidis NIHLM020]
gi|420201592|ref|ZP_14707202.1| putative DnaQ family exonuclease/DinG family helicase
[Staphylococcus epidermidis NIHLM018]
gi|420208968|ref|ZP_14714406.1| putative DnaQ family exonuclease/DinG family helicase
[Staphylococcus epidermidis NIHLM003]
gi|420213923|ref|ZP_14719203.1| putative DnaQ family exonuclease/DinG family helicase
[Staphylococcus epidermidis NIH05005]
gi|420217899|ref|ZP_14723029.1| putative DnaQ family exonuclease/DinG family helicase
[Staphylococcus epidermidis NIH05001]
gi|420220814|ref|ZP_14725771.1| putative DnaQ family exonuclease/DinG family helicase
[Staphylococcus epidermidis NIH04008]
gi|420221753|ref|ZP_14726679.1| putative DnaQ family exonuclease/DinG family helicase
[Staphylococcus epidermidis NIH08001]
gi|420225659|ref|ZP_14730486.1| putative DnaQ family exonuclease/DinG family helicase
[Staphylococcus epidermidis NIH06004]
gi|420229566|ref|ZP_14734272.1| putative DnaQ family exonuclease/DinG family helicase
[Staphylococcus epidermidis NIH04003]
gi|420234625|ref|ZP_14739185.1| putative DnaQ family exonuclease/DinG family helicase
[Staphylococcus epidermidis NIH051475]
gi|421607044|ref|ZP_16048294.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
[Staphylococcus epidermidis AU12-03]
gi|81819394|sp|Q5HP88.1|DING_STAEQ RecName: Full=Probable ATP-dependent helicase DinG homolog
gi|81842831|sp|Q8CP71.1|DING_STAES RecName: Full=Probable ATP-dependent helicase DinG homolog
gi|27315606|gb|AAO04740.1|AE016747_237 dinG protein [Staphylococcus epidermidis ATCC 12228]
gi|57637613|gb|AAW54401.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
[Staphylococcus epidermidis RP62A]
gi|251805563|gb|EES58220.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
epidermidis BCM-HMP0060]
gi|281295136|gb|EFA87663.1| putative DnaQ family exonuclease/DinG family helicase
[Staphylococcus epidermidis SK135]
gi|291319345|gb|EFE59714.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
epidermidis M23864:W2(grey)]
gi|329725381|gb|EGG61864.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus
epidermidis VCU144]
gi|329735254|gb|EGG71546.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus
epidermidis VCU045]
gi|329737465|gb|EGG73719.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus
epidermidis VCU028]
gi|341651198|gb|EGS75003.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus
epidermidis VCU105]
gi|341654709|gb|EGS78447.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus
epidermidis VCU109]
gi|341656110|gb|EGS79833.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus
epidermidis VCU037]
gi|374401414|gb|EHQ72487.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus
epidermidis VCU041]
gi|374406556|gb|EHQ77448.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus
epidermidis VCU065]
gi|374410392|gb|EHQ81150.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus
epidermidis VCU081]
gi|374826021|gb|EHR89937.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus
epidermidis VCU125]
gi|374828290|gb|EHR92129.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus
epidermidis VCU123]
gi|374828954|gb|EHR92777.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus
epidermidis VCU126]
gi|383358258|gb|EID35719.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus aureus
subsp. aureus IS-250]
gi|383360702|gb|EID38097.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus aureus
subsp. aureus IS-K]
gi|394235262|gb|EJD80834.1| putative DnaQ family exonuclease/DinG family helicase
[Staphylococcus epidermidis NIHLM088]
gi|394240514|gb|EJD85937.1| putative DnaQ family exonuclease/DinG family helicase
[Staphylococcus epidermidis NIHLM070]
gi|394241676|gb|EJD87085.1| putative DnaQ family exonuclease/DinG family helicase
[Staphylococcus epidermidis NIHLM067]
gi|394249589|gb|EJD94802.1| putative DnaQ family exonuclease/DinG family helicase
[Staphylococcus epidermidis NIHLM049]
gi|394256313|gb|EJE01246.1| putative DnaQ family exonuclease/DinG family helicase
[Staphylococcus epidermidis NIHLM039]
gi|394263821|gb|EJE08542.1| putative DnaQ family exonuclease/DinG family helicase
[Staphylococcus epidermidis NIHLM021]
gi|394266150|gb|EJE10796.1| putative DnaQ family exonuclease/DinG family helicase
[Staphylococcus epidermidis NIHLM020]
gi|394271860|gb|EJE16339.1| putative DnaQ family exonuclease/DinG family helicase
[Staphylococcus epidermidis NIHLM018]
gi|394279196|gb|EJE23504.1| putative DnaQ family exonuclease/DinG family helicase
[Staphylococcus epidermidis NIHLM003]
gi|394283845|gb|EJE28006.1| putative DnaQ family exonuclease/DinG family helicase
[Staphylococcus epidermidis NIH05005]
gi|394285702|gb|EJE29775.1| putative DnaQ family exonuclease/DinG family helicase
[Staphylococcus epidermidis NIH04008]
gi|394286341|gb|EJE30352.1| putative DnaQ family exonuclease/DinG family helicase
[Staphylococcus epidermidis NIH05001]
gi|394290164|gb|EJE34031.1| putative DnaQ family exonuclease/DinG family helicase
[Staphylococcus epidermidis NIH08001]
gi|394293093|gb|EJE36816.1| putative DnaQ family exonuclease/DinG family helicase
[Staphylococcus epidermidis NIH06004]
gi|394299332|gb|EJE42883.1| putative DnaQ family exonuclease/DinG family helicase
[Staphylococcus epidermidis NIH04003]
gi|394303868|gb|EJE47278.1| putative DnaQ family exonuclease/DinG family helicase
[Staphylococcus epidermidis NIH051475]
gi|406657337|gb|EKC83726.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
[Staphylococcus epidermidis AU12-03]
Length = 902
Score = 43.1 bits (100), Expect = 0.038, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+FVAHN FD+ F+ K F +C++ R +DTL EL K L AL E
Sbjct: 86 VFVAHNIS-FDLNFIKKAFEKCNIQFKPK-RVMDTL----ELFKIAFPTDKSYQLSALAE 139
Query: 92 YFGIPLEGSAHRAMSDVNSLASIL 115
IPL +AHRA D + A ++
Sbjct: 140 SHHIPLN-NAHRADEDATTTAKLM 162
>gi|420231981|ref|ZP_14736623.1| putative DnaQ family exonuclease/DinG family helicase
[Staphylococcus epidermidis NIH051668]
gi|394301703|gb|EJE45157.1| putative DnaQ family exonuclease/DinG family helicase
[Staphylococcus epidermidis NIH051668]
Length = 902
Score = 43.1 bits (100), Expect = 0.038, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+FVAHN FD+ F+ K F +C++ R +DTL EL K L AL E
Sbjct: 86 VFVAHNIS-FDLNFIKKAFEKCNIQFKPK-RVMDTL----ELFKIAFPTDKSYQLSALAE 139
Query: 92 YFGIPLEGSAHRAMSDVNSLASIL 115
IPL +AHRA D + A ++
Sbjct: 140 SHHIPLN-NAHRADEDATTTAKLM 162
>gi|420227247|ref|ZP_14732019.1| putative DnaQ family exonuclease/DinG family helicase
[Staphylococcus epidermidis NIH05003]
gi|394297337|gb|EJE40938.1| putative DnaQ family exonuclease/DinG family helicase
[Staphylococcus epidermidis NIH05003]
Length = 902
Score = 43.1 bits (100), Expect = 0.038, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+FVAHN FD+ F+ K F +C++ R +DTL EL K L AL E
Sbjct: 86 VFVAHNIS-FDLNFIKKAFEKCNIQFKPK-RVMDTL----ELFKIAFPTDKSYQLSALAE 139
Query: 92 YFGIPLEGSAHRAMSDVNSLASIL 115
IPL +AHRA D + A ++
Sbjct: 140 SHHIPLN-NAHRADEDATTTAKLM 162
>gi|420192213|ref|ZP_14698073.1| putative DnaQ family exonuclease/DinG family helicase
[Staphylococcus epidermidis NIHLM023]
gi|394261424|gb|EJE06221.1| putative DnaQ family exonuclease/DinG family helicase
[Staphylococcus epidermidis NIHLM023]
Length = 902
Score = 43.1 bits (100), Expect = 0.038, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+FVAHN FD+ F+ K F +C++ R +DTL EL K L AL E
Sbjct: 86 VFVAHNIS-FDLNFIKKAFEKCNIQFKPK-RVMDTL----ELFKIAFPTDKSYQLSALAE 139
Query: 92 YFGIPLEGSAHRAMSDVNSLASIL 115
IPL +AHRA D + A ++
Sbjct: 140 SHHIPLN-NAHRADEDATTTAKLM 162
>gi|420184439|ref|ZP_14690548.1| putative DnaQ family exonuclease/DinG family helicase
[Staphylococcus epidermidis NIHLM040]
gi|394257090|gb|EJE02012.1| putative DnaQ family exonuclease/DinG family helicase
[Staphylococcus epidermidis NIHLM040]
Length = 902
Score = 43.1 bits (100), Expect = 0.038, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+FVAHN FD+ F+ K F +C++ R +DTL EL K L AL E
Sbjct: 86 VFVAHNIS-FDLNFIKKAFEKCNIQFKPK-RVMDTL----ELFKIAFPTDKSYQLSALAE 139
Query: 92 YFGIPLEGSAHRAMSDVNSLASIL 115
IPL +AHRA D + A ++
Sbjct: 140 SHHIPLN-NAHRADEDATTTAKLM 162
>gi|420163165|ref|ZP_14669912.1| putative DnaQ family exonuclease/DinG family helicase
[Staphylococcus epidermidis NIHLM095]
gi|420167859|ref|ZP_14674511.1| putative DnaQ family exonuclease/DinG family helicase
[Staphylococcus epidermidis NIHLM087]
gi|394234854|gb|EJD80428.1| putative DnaQ family exonuclease/DinG family helicase
[Staphylococcus epidermidis NIHLM095]
gi|394237887|gb|EJD83373.1| putative DnaQ family exonuclease/DinG family helicase
[Staphylococcus epidermidis NIHLM087]
Length = 902
Score = 43.1 bits (100), Expect = 0.038, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+FVAHN FD+ F+ K F +C++ R +DTL EL K L AL E
Sbjct: 86 VFVAHNIS-FDLNFIKKAFEKCNIQFKPK-RVMDTL----ELFKIAFPTDKSYQLSALAE 139
Query: 92 YFGIPLEGSAHRAMSDVNSLASIL 115
IPL +AHRA D + A ++
Sbjct: 140 SHHIPLN-NAHRADEDATTTAKLM 162
>gi|418613320|ref|ZP_13176334.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus
epidermidis VCU117]
gi|374816255|gb|EHR80462.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus
epidermidis VCU117]
Length = 902
Score = 43.1 bits (100), Expect = 0.038, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+FVAHN FD+ F+ K F +C++ R +DTL EL K L AL E
Sbjct: 86 VFVAHNIS-FDLNFIKKAFEKCNIQFKPK-RVMDTL----ELFKIAFPTDKSYQLSALAE 139
Query: 92 YFGIPLEGSAHRAMSDVNSLASIL 115
IPL +AHRA D + A ++
Sbjct: 140 SHHIPLN-NAHRADEDATTTAKLM 162
>gi|329119491|ref|ZP_08248176.1| DNA polymerase III, epsilon subunit [Neisseria bacilliformis ATCC
BAA-1200]
gi|327464424|gb|EGF10724.1| DNA polymerase III, epsilon subunit [Neisseria bacilliformis ATCC
BAA-1200]
Length = 484
Score = 43.1 bits (100), Expect = 0.038, Method: Composition-based stats.
Identities = 33/85 (38%), Positives = 46/85 (54%), Gaps = 8/85 (9%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
I +AHN++ FD FL + F+RC + P L T+ L+R L Q K SL+++ E
Sbjct: 122 ILLAHNSK-FDYTFLRRAFARCGL--PFAAPTLCTVQLSRRLYPQ----FYKHSLESIIE 174
Query: 92 YFGIPLEGSAHRAMSDVNSLASILE 116
GI S HRA DV ++A LE
Sbjct: 175 RHGIA-AASRHRATDDVLAVADYLE 198
>gi|418411874|ref|ZP_12985140.1| exonuclease, DNA polymerase III, epsilon subunit [Staphylococcus
epidermidis BVS058A4]
gi|410891457|gb|EKS39254.1| exonuclease, DNA polymerase III, epsilon subunit [Staphylococcus
epidermidis BVS058A4]
Length = 902
Score = 43.1 bits (100), Expect = 0.039, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+FVAHN FD+ F+ K F +C++ R +DTL EL K L AL E
Sbjct: 86 VFVAHNIS-FDLNFIKKAFEKCNIQFKPK-RVMDTL----ELFKIAFPTDKSYQLSALAE 139
Query: 92 YFGIPLEGSAHRAMSDVNSLASIL 115
IPL +AHRA D + A ++
Sbjct: 140 SHHIPLN-NAHRADEDATTTAKLM 162
>gi|242242736|ref|ZP_04797181.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
epidermidis W23144]
gi|420174773|ref|ZP_14681221.1| putative DnaQ family exonuclease/DinG family helicase
[Staphylococcus epidermidis NIHLM061]
gi|242233872|gb|EES36184.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
epidermidis W23144]
gi|394244677|gb|EJD90012.1| putative DnaQ family exonuclease/DinG family helicase
[Staphylococcus epidermidis NIHLM061]
Length = 902
Score = 43.1 bits (100), Expect = 0.039, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+FVAHN FD+ F+ K F +C++ R +DTL EL K L AL E
Sbjct: 86 VFVAHNIS-FDLNFIKKAFEKCNIQFKPK-RVMDTL----ELFKIAFPTDKSYQLSALAE 139
Query: 92 YFGIPLEGSAHRAMSDVNSLASIL 115
IPL +AHRA D + A ++
Sbjct: 140 SHHIPLN-NAHRADEDATTTAKLM 162
>gi|420178162|ref|ZP_14684495.1| putative DnaQ family exonuclease/DinG family helicase
[Staphylococcus epidermidis NIHLM057]
gi|420179824|ref|ZP_14686101.1| putative DnaQ family exonuclease/DinG family helicase
[Staphylococcus epidermidis NIHLM053]
gi|394246788|gb|EJD92040.1| putative DnaQ family exonuclease/DinG family helicase
[Staphylococcus epidermidis NIHLM057]
gi|394252419|gb|EJD97454.1| putative DnaQ family exonuclease/DinG family helicase
[Staphylococcus epidermidis NIHLM053]
Length = 902
Score = 43.1 bits (100), Expect = 0.040, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+FVAHN FD+ F+ K F +C++ R +DTL EL K L AL E
Sbjct: 86 VFVAHNIS-FDLNFIKKAFEKCNIQFKPK-RVMDTL----ELFKIAFPTDKSYQLSALAE 139
Query: 92 YFGIPLEGSAHRAMSDVNSLASIL 115
IPL +AHRA D + A ++
Sbjct: 140 SHHIPLN-NAHRADEDATTTAKLM 162
>gi|418633076|ref|ZP_13195493.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus
epidermidis VCU129]
gi|420190079|ref|ZP_14696023.1| putative DnaQ family exonuclease/DinG family helicase
[Staphylococcus epidermidis NIHLM037]
gi|420204380|ref|ZP_14709938.1| putative DnaQ family exonuclease/DinG family helicase
[Staphylococcus epidermidis NIHLM015]
gi|374839895|gb|EHS03402.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus
epidermidis VCU129]
gi|394258970|gb|EJE03840.1| putative DnaQ family exonuclease/DinG family helicase
[Staphylococcus epidermidis NIHLM037]
gi|394273390|gb|EJE17821.1| putative DnaQ family exonuclease/DinG family helicase
[Staphylococcus epidermidis NIHLM015]
Length = 902
Score = 43.1 bits (100), Expect = 0.040, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+FVAHN FD+ F+ K F +C++ R +DTL EL K L AL E
Sbjct: 86 VFVAHNIS-FDLNFIKKAFEKCNIQFKPK-RVMDTL----ELFKIAFPTDKSYQLSALAE 139
Query: 92 YFGIPLEGSAHRAMSDVNSLASIL 115
IPL +AHRA D + A ++
Sbjct: 140 SHHIPLN-NAHRADEDATTTAKLM 162
>gi|416125210|ref|ZP_11595808.1| putative dnaQ family exonuclease/DinG family helicase
[Staphylococcus epidermidis FRI909]
gi|319400807|gb|EFV89026.1| putative dnaQ family exonuclease/DinG family helicase
[Staphylococcus epidermidis FRI909]
Length = 902
Score = 43.1 bits (100), Expect = 0.040, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+FVAHN FD+ F+ K F +C++ R +DTL EL K L AL E
Sbjct: 86 VFVAHNIS-FDLNFIKKAFEKCNIQFKPK-RVMDTL----ELFKIAFPTDKSYQLSALAE 139
Query: 92 YFGIPLEGSAHRAMSDVNSLASIL 115
IPL +AHRA D + A ++
Sbjct: 140 SHHIPLN-NAHRADEDATTTAKLM 162
>gi|418630514|ref|ZP_13192995.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus
epidermidis VCU128]
gi|374837704|gb|EHS01267.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus
epidermidis VCU128]
Length = 902
Score = 43.1 bits (100), Expect = 0.040, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+FVAHN FD+ F+ K F +C++ R +DTL EL K L AL E
Sbjct: 86 VFVAHNIS-FDLNFIKKAFEKCNIQFKPK-RVMDTL----ELFKIAFPTDKSYQLSALAE 139
Query: 92 YFGIPLEGSAHRAMSDVNSLASIL 115
IPL +AHRA D + A ++
Sbjct: 140 SHHIPLN-NAHRADEDATTTAKLM 162
>gi|420199399|ref|ZP_14705077.1| putative DnaQ family exonuclease/DinG family helicase
[Staphylococcus epidermidis NIHLM031]
gi|394272181|gb|EJE16650.1| putative DnaQ family exonuclease/DinG family helicase
[Staphylococcus epidermidis NIHLM031]
Length = 902
Score = 43.1 bits (100), Expect = 0.041, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+FVAHN FD+ F+ K F +C++ R +DTL EL K L AL E
Sbjct: 86 VFVAHNIS-FDLNFIKKAFEKCNIQFKPK-RVMDTL----ELFKIAFPTDKSYQLSALAE 139
Query: 92 YFGIPLEGSAHRAMSDVNSLASIL 115
IPL +AHRA D + A ++
Sbjct: 140 SHHIPLN-NAHRADEDATTTAKLM 162
>gi|418614729|ref|ZP_13177691.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus
epidermidis VCU118]
gi|374819265|gb|EHR83393.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus
epidermidis VCU118]
Length = 902
Score = 43.1 bits (100), Expect = 0.041, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+FVAHN FD+ F+ K F +C++ R +DTL EL K L AL E
Sbjct: 86 VFVAHNIS-FDLNFIKKAFEKCNIQFKPK-RVMDTL----ELFKIAFPTDKSYQLSALAE 139
Query: 92 YFGIPLEGSAHRAMSDVNSLASIL 115
IPL +AHRA D + A ++
Sbjct: 140 SHHIPLN-NAHRADEDATTTAKLM 162
>gi|39996485|ref|NP_952436.1| 3'-to-5' exonuclease [Geobacter sulfurreducens PCA]
gi|409911910|ref|YP_006890375.1| 3'-to-5' exonuclease [Geobacter sulfurreducens KN400]
gi|39983365|gb|AAR34759.1| 3'-to-5' exonuclease, putative [Geobacter sulfurreducens PCA]
gi|298505487|gb|ADI84210.1| 3'-to-5' exonuclease, putative [Geobacter sulfurreducens KN400]
Length = 181
Score = 42.7 bits (99), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 53/108 (49%), Gaps = 14/108 (12%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
P E++ P + ++ + A+ VAHNAR FD+ FL EF R +++ N R TL
Sbjct: 71 PLPEEVYPALGDFIGT-------ALLVAHNAR-FDLAFLRHEFGRLGLSL--NSRSACTL 120
Query: 68 PLARELMKQNGSVSSKTSLQALREYFGIPLEGS-AHRAMSDVNSLASI 114
LAR + + +T Q L FG EG+ HRA+ D A +
Sbjct: 121 ELARRRLPELTDHRLETVYQHL---FGAVPEGTRCHRALDDARLTARV 165
>gi|349701361|ref|ZP_08902990.1| DNA polymerase III, epsilon subunit [Gluconacetobacter europaeus
LMG 18494]
Length = 226
Score = 42.7 bits (99), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 45/96 (46%), Gaps = 7/96 (7%)
Query: 33 FVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREY 92
+AHNAR FD FL E +R + D R +DTL +ARE SL AL
Sbjct: 87 LIAHNAR-FDFGFLNAELARARLPELDMGRMVDTLDMARERFP-----GMPNSLDALCRR 140
Query: 93 FGIPL-EGSAHRAMSDVNSLASILERITSDLNFTLS 127
F I L E + H A+ D LA++ +T LS
Sbjct: 141 FSIDLSERTTHNALLDCRLLAAVYLELTGGRQRGLS 176
>gi|91785922|ref|YP_546874.1| DNA polymerase III subunit epsilon [Polaromonas sp. JS666]
gi|91695147|gb|ABE41976.1| DNA polymerase III, epsilon subunit [Polaromonas sp. JS666]
Length = 203
Score = 42.7 bits (99), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
A VAHNA FD F E SR + F T+ ++R L Q S L L
Sbjct: 84 APLVAHNAS-FDRKFWEAELSRAGERA--SQPFACTMLVSRRLYPQAPS----HKLGVLV 136
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILERITSDL 122
+Y +P G AHRA++D AS+L +I DL
Sbjct: 137 DYHHLPKAGRAHRALADAEMAASLLGQIQHDL 168
>gi|381182226|ref|ZP_09891043.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Listeriaceae bacterium TTU M1-001]
gi|380317871|gb|EIA21173.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Listeriaceae bacterium TTU M1-001]
Length = 932
Score = 42.7 bits (99), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 55/116 (47%), Gaps = 14/116 (12%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
P ED+ ++ +++ IFVAHN FD FL KE R ++IP + +DT+
Sbjct: 72 PLFEDVAETILALLDN-------TIFVAHNVH-FDWTFLQKEMRRVGLSIP-KMKLIDTV 122
Query: 68 PLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITSDLN 123
LAR L SV S LQ L + FG + + H+A SD A + + L
Sbjct: 123 ELARILYP---SVDS-YKLQDLADEFGF-IHENPHQADSDALVTAELFIKCVEKLE 173
>gi|421565778|ref|ZP_16011547.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis NM3081]
gi|402343197|gb|EJU78351.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis NM3081]
Length = 461
Score = 42.7 bits (99), Expect = 0.046, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+ +AHN+R FD FL EF R + L ++ L+R L Q K SL ++ E
Sbjct: 100 VLIAHNSR-FDYTFLKHEFHRAGIGFSSP--ALCSVQLSRCLYPQ----FYKHSLDSIIE 152
Query: 92 YFGIPLEGSAHRAMSDVNSLASILERITSD 121
GI +E HRAM+DV++L LE S+
Sbjct: 153 RLGIVVE-DRHRAMADVSALCDYLEYSLSE 181
>gi|421542747|ref|ZP_15988853.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis NM255]
gi|402316666|gb|EJU52208.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis NM255]
Length = 496
Score = 42.7 bits (99), Expect = 0.046, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+ +AHN+R FD FL EF R + L ++ L+R L Q K SL ++ E
Sbjct: 100 VLIAHNSR-FDYTFLKHEFHRAGIGFSSP--ALCSVQLSRCLYPQ----FYKHSLDSIIE 152
Query: 92 YFGIPLEGSAHRAMSDVNSLASILERITSD 121
GI +E HRAM+DV++L LE S+
Sbjct: 153 RLGIVVE-DRHRAMADVSALCDYLEYSLSE 181
>gi|269214643|ref|ZP_05986966.2| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
lactamica ATCC 23970]
gi|269209302|gb|EEZ75757.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
lactamica ATCC 23970]
Length = 470
Score = 42.7 bits (99), Expect = 0.046, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+ +AHN+R FD FL EF R + L ++ L+R L Q K SL ++ E
Sbjct: 109 VLIAHNSR-FDYTFLKHEFHRAGIGFSSP--ALCSVQLSRCLYPQ----FYKHSLDSIIE 161
Query: 92 YFGIPLEGSAHRAMSDVNSLASILERITSD 121
GI +E HRAM+DV++L LE S+
Sbjct: 162 RLGIVVE-DRHRAMADVSALCDYLEYSLSE 190
>gi|269213464|ref|ZP_05982022.2| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
cinerea ATCC 14685]
gi|269146173|gb|EEZ72591.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
cinerea ATCC 14685]
Length = 470
Score = 42.7 bits (99), Expect = 0.046, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+ +AHN+R FD FL EF R + L ++ L+R L Q K SL ++ E
Sbjct: 109 VLIAHNSR-FDYTFLKHEFHRAGIGFSSP--ALCSVQLSRCLYPQ----FYKHSLDSIIE 161
Query: 92 YFGIPLEGSAHRAMSDVNSLASILERITSD 121
GI +E HRAM+DV++L LE S+
Sbjct: 162 RLGIVVE-DRHRAMADVSALCDYLEYSLSE 190
>gi|342210982|ref|ZP_08703723.1| DNA-directed DNA polymerase III, epsilon subunit [Mycoplasma anatis
1340]
gi|341578641|gb|EGS29005.1| DNA-directed DNA polymerase III, epsilon subunit [Mycoplasma anatis
1340]
Length = 347
Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 49/97 (50%), Gaps = 8/97 (8%)
Query: 29 EIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQA 88
E IFVAH+A FD LA E + +P N DTL R + K +L++
Sbjct: 242 EDYIFVAHDAP-FDAAVLANELKLRGIEVP-NMIIFDTLTYFRNKL----PTLQKWNLKS 295
Query: 89 LREYFGIPLEGSAHRAMSDVNSLASILERITSDLNFT 125
L E+F I +G H A SDV L+ ++ ++T+ FT
Sbjct: 296 LCEHFNI--QGIHHNAQSDVKMLSKLILKVTTWEEFT 330
>gi|318060238|ref|ZP_07978961.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actG]
gi|318076974|ref|ZP_07984306.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actF]
Length = 647
Score = 42.7 bits (99), Expect = 0.047, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 7/84 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+ VAHNA+ FD FLA EF+R + +P R L TL L R++ + L +L
Sbjct: 95 VLVAHNAQ-FDYDFLAHEFARARLYLPVTRR-LCTLALNRQV----DPPTRDMKLGSLAA 148
Query: 92 YFGIPLEGSAHRAMSDVNSLASIL 115
++G+P AH A+ D LA I
Sbjct: 149 HYGVP-RTRAHDALDDTRVLAGIF 171
>gi|425734098|ref|ZP_18852418.1| hypothetical protein C272_03140 [Brevibacterium casei S18]
gi|425482538|gb|EKU49695.1| hypothetical protein C272_03140 [Brevibacterium casei S18]
Length = 584
Score = 42.7 bits (99), Expect = 0.047, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 5/88 (5%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
A+ VAHNA FD+ FL R + P + LDT+ L+R ++ ++ + K L L
Sbjct: 114 AVLVAHNAP-FDIGFLRSACERLDYHWPQP-QVLDTVTLSRRVLGRDEVRNHK--LGTLA 169
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILERI 118
+FG +E HRA+SD + +L R+
Sbjct: 170 AHFGTVVEPD-HRALSDARATGEVLHRL 196
>gi|421538414|ref|ZP_15984590.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
meningitidis 93003]
gi|402316441|gb|EJU51986.1| exonuclease, DNA polymerase III, epsilon subunit [Neisseria
meningitidis 93003]
Length = 461
Score = 42.7 bits (99), Expect = 0.047, Method: Composition-based stats.
Identities = 34/90 (37%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+ VAHN+R FD FL EF R + L ++ L+R L Q K SL + E
Sbjct: 100 VLVAHNSR-FDYTFLKHEFHRVGIGFSSP--ALCSVQLSRCLYPQ----FYKHSLDGIIE 152
Query: 92 YFGIPLEGSAHRAMSDVNSLASILERITSD 121
GI +E HRAM+DV++L LE S+
Sbjct: 153 RLGIVVE-DRHRAMADVSALCDYLEYSLSE 181
>gi|392947199|ref|ZP_10312841.1| exonuclease, DNA polymerase III, epsilon subunit family [Frankia
sp. QA3]
gi|392290493|gb|EIV96517.1| exonuclease, DNA polymerase III, epsilon subunit family [Frankia
sp. QA3]
Length = 626
Score = 42.7 bits (99), Expect = 0.050, Method: Composition-based stats.
Identities = 39/140 (27%), Positives = 66/140 (47%), Gaps = 16/140 (11%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
P +++P +++ A+ VAHNA FD+ FL RC P W LDTL
Sbjct: 130 PAEAEVVPTFLEFARG-------AVLVAHNAP-FDLGFLRAAAQRCGYP-PPVWEHLDTL 180
Query: 68 PLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSD----VNSLASILERITSDLN 123
+AR ++ ++ + + L +L F E HRA++D V+ L + +R+ +
Sbjct: 181 RIARRVVSRDEAPDCR--LASLARLFRSSTE-PCHRALADARATVDVLHGLFDRLGNAGV 237
Query: 124 FTLSDLLKTSFRANFDHSKK 143
TL +L + S R + +K
Sbjct: 238 RTLEELHEYSARVSPAQRRK 257
>gi|395546837|ref|XP_003775130.1| PREDICTED: three prime repair exonuclease 2 [Sarcophilus harrisii]
Length = 240
Score = 42.7 bits (99), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 51/107 (47%), Gaps = 9/107 (8%)
Query: 17 VIKYVNSRLGPGEIAI-FVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMK 75
V+K + L E I VAHN +D P L E R ++PD LDTLP + L K
Sbjct: 96 VVKALQEFLKRQEAPICLVAHNGFDYDFPLLRTELQRLGADMPDGTLCLDTLPALKGLDK 155
Query: 76 QN-----GSVSSKT-SLQAL-REYFGIPLEGSAHRAMSDVNSLASIL 115
+ S S K+ SL L R+YF + +AH A DV +L +
Sbjct: 156 GHHHSTRASHSKKSYSLSNLYRQYFNDEPK-AAHSAEGDVYTLVMVF 201
>gi|15618565|ref|NP_224851.1| DNA polymerase III subunit epsilon [Chlamydophila pneumoniae
CWL029]
gi|15836187|ref|NP_300711.1| DNA polymerase III subunit epsilon [Chlamydophila pneumoniae J138]
gi|16752385|ref|NP_444644.1| DNA polymerase III subunit epsilon [Chlamydophila pneumoniae AR39]
gi|33242012|ref|NP_876953.1| DNA polymerase III subunit epsilon [Chlamydophila pneumoniae
TW-183]
gi|4376954|gb|AAD18794.1| DNA Polymerase III Epsilon Chain [Chlamydophila pneumoniae CWL029]
gi|8163364|gb|AAF73628.1| DNA polymerase III, epsilon subunit, putative [Chlamydophila
pneumoniae AR39]
gi|8979027|dbj|BAA98862.1| DNA polymerase III epsilon chain [Chlamydophila pneumoniae J138]
gi|33236522|gb|AAP98610.1| DNA polymerase III [Chlamydophila pneumoniae TW-183]
Length = 249
Score = 42.7 bits (99), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
Query: 33 FVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREY 92
++ ++ FD+ LA+E R + +DTL LA+E S SL++L +
Sbjct: 90 YIVGHSVGFDLQVLAQEMERIGETFLSKYTIIDTLRLAKEY-----GDSPNNSLESLAVH 144
Query: 93 FGIPLEGSAHRAMSDV 108
F +P +G+ HRAM DV
Sbjct: 145 FNVPYDGN-HRAMKDV 159
>gi|269123116|ref|YP_003305693.1| DNA polymerase III subunit alpha [Streptobacillus moniliformis DSM
12112]
gi|268314442|gb|ACZ00816.1| DNA polymerase III, alpha subunit [Streptobacillus moniliformis DSM
12112]
Length = 1465
Score = 42.7 bits (99), Expect = 0.055, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 52/89 (58%), Gaps = 10/89 (11%)
Query: 33 FVAHNARRFDVPFLAKEFSRCS-MNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
VAHNA+ FDV F++K +C +N+ ++ ++DTL ++ L+ + +L L +
Sbjct: 485 LVAHNAK-FDVGFISK---KCEDLNLETDFSYIDTLEWSKILVDD----VKRFNLDTLTK 536
Query: 92 YFGIPLEGSAHRAMSDVNSLASILERITS 120
F I LE + HRA+ D N+ A + +++ S
Sbjct: 537 RFNIKLE-NHHRAVDDANATAELFKKLLS 564
>gi|89898728|ref|YP_515838.1| DNA polymerase III subunit epsilon [Chlamydophila felis Fe/C-56]
gi|89332100|dbj|BAE81693.1| DNA polymerase III epsilon chain [Chlamydophila felis Fe/C-56]
Length = 249
Score = 42.4 bits (98), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 13/101 (12%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
PR+ ++ P + + L G+ ++ ++ FD+ L +E R + +DTL
Sbjct: 72 PRISEVFP----KIQAFLKEGD---YIVGHSVGFDLQVLTQEAERIGETFLSKYCIIDTL 124
Query: 68 PLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDV 108
LA+E S SL+AL +F +P +G+ HRAM DV
Sbjct: 125 RLAKEY-----GDSPNNSLEALAVHFNVPYDGN-HRAMKDV 159
>gi|255547339|ref|XP_002514727.1| exonuclease, putative [Ricinus communis]
gi|223546331|gb|EEF47833.1| exonuclease, putative [Ricinus communis]
Length = 501
Score = 42.4 bits (98), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 12/101 (11%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
P ++ IV + +N R I+ HN +RFD + + F+ P+N +DTL
Sbjct: 81 PTFAEIADIVYEILNGR-------IWAGHNIQRFDCVRIREAFAEIGRQPPENKGIIDTL 133
Query: 68 PLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDV 108
L L + G + + +L YFG L HR++ DV
Sbjct: 134 AL---LTHKFGRRAGDMKMASLATYFG--LGKQTHRSLDDV 169
>gi|296314226|ref|ZP_06864167.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
polysaccharea ATCC 43768]
gi|296839130|gb|EFH23068.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
polysaccharea ATCC 43768]
Length = 408
Score = 42.4 bits (98), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 47/91 (51%), Gaps = 8/91 (8%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
+ +AHN+R FD FL EF R + L ++ L+R L Q K SL ++
Sbjct: 46 CVLIAHNSR-FDYTFLKHEFHRAGIGFSSP--ALCSVQLSRCLYPQ----FYKHSLDSII 98
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILERITSD 121
E GI +E HRAM+DV++L LE S+
Sbjct: 99 ERLGIVVE-DRHRAMADVSALCDYLEYSLSE 128
>gi|350562772|ref|ZP_08931595.1| DNA polymerase III, epsilon subunit [Thioalkalimicrobium aerophilum
AL3]
gi|349779638|gb|EGZ33979.1| DNA polymerase III, epsilon subunit [Thioalkalimicrobium aerophilum
AL3]
Length = 490
Score = 42.4 bits (98), Expect = 0.059, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 49/93 (52%), Gaps = 12/93 (12%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWR--FLDTLPLARELMKQNGSVSSKTSLQAL 89
+FVAHNAR FD F+ +F + +N WR L T+ L+++L Q + L L
Sbjct: 100 VFVAHNAR-FDYGFIKHQFKQLGLN----WRATTLCTVKLSKQLFPQ----YPRHGLDHL 150
Query: 90 REYFGIPLEGSAHRAMSDVNSLASILERITSDL 122
+ +P + HRAM DV + + L +++ ++
Sbjct: 151 VARYDLP-QVDRHRAMGDVELMVAFLAKLSDEV 182
>gi|410731008|ref|YP_006973363.1| ATP-dependent DNA helicase, RecQ family [Thermus oshimai JL-2]
gi|410698199|gb|AFV77266.1| ATP-dependent DNA helicase, RecQ family [Thermus oshimai JL-2]
Length = 1716
Score = 42.4 bits (98), Expect = 0.061, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 33 FVAHNARRFDVPFLAKEFSRCSMNIPDNWR-FLDTLPLARELMKQNGSVSSKTSLQALRE 91
+ HN R+D+P L + + P +R LDTL LA+ L + L L
Sbjct: 89 LLGHNLLRYDLPLLVRALRGVGLEPPAAFRDSLDTLRLAQLLFPTPPEGLAGYRLGDLYA 148
Query: 92 YF-GIPLEGSAHRAMSDVNSLASIL 115
YF G PLEG AHRA+ D + ++L
Sbjct: 149 YFTGAPLEG-AHRALVDAEATWTVL 172
>gi|313202457|ref|YP_004041115.1| DNA polymerase III subunit epsilon [Methylovorus sp. MP688]
gi|312441773|gb|ADQ85879.1| DNA polymerase III, epsilon subunit [Methylovorus sp. MP688]
Length = 473
Score = 42.4 bits (98), Expect = 0.061, Method: Composition-based stats.
Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 8/94 (8%)
Query: 29 EIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQA 88
E A+ AHN R FD FL EF R +++ + L T+ L+R+L Q+ S SL +
Sbjct: 82 EGAVLCAHNVR-FDHGFLKNEFKRIGIDL--RQKVLCTVKLSRKLYPQHRS----HSLDS 134
Query: 89 LREYFGIPLEGSAHRAMSDVNSLASILERITSDL 122
+ E + G+ HRAM DV +L L ++L
Sbjct: 135 IIERHSLQC-GARHRAMGDVVALVDFLRAAEAEL 167
>gi|433644693|ref|YP_007277260.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
[Mycobacterium smegmatis JS623]
gi|433301413|gb|AGB27230.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
[Mycobacterium smegmatis JS623]
Length = 193
Score = 42.4 bits (98), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 54/122 (44%), Gaps = 17/122 (13%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
PR D+ + ++ R I VAHNA FD FLA E RC ++P D L
Sbjct: 69 PRYADIADQLAPLLHGR-------ILVAHNAA-FDYAFLAAEARRCGADLP----VADVL 116
Query: 68 PLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILER---ITSDLNF 124
EL + SL AL ++GI + H A+ D LA+IL R + +D
Sbjct: 117 -CTHELADRLDLGLPSLSLAALAAHWGI-QQARPHDALDDARVLAAILPRALAVAADRGV 174
Query: 125 TL 126
T+
Sbjct: 175 TV 176
>gi|339009419|ref|ZP_08641991.1| DNA polymerase III polC-type [Brevibacillus laterosporus LMG 15441]
gi|338773897|gb|EGP33428.1| DNA polymerase III polC-type [Brevibacillus laterosporus LMG 15441]
Length = 1438
Score = 42.4 bits (98), Expect = 0.066, Method: Composition-based stats.
Identities = 39/107 (36%), Positives = 52/107 (48%), Gaps = 11/107 (10%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
+I VAHNA FD F+ R M P FLDTLPLAR L L L
Sbjct: 504 SILVAHNAE-FDQAFINACAIRVGME-PWTNSFLDTLPLARMLYPG----MRNYRLGTLA 557
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILERITSDLN----FTLSDLLKTS 133
+ F + L +AHRA+ D +LA + + + D+ TLS+L + S
Sbjct: 558 KRFNVELI-NAHRALDDTVALAKVFQLMLKDVKEAEIKTLSELNERS 603
>gi|421872758|ref|ZP_16304375.1| DNA polymerase III, alpha subunit, Gram-positive type
[Brevibacillus laterosporus GI-9]
gi|372458173|emb|CCF13924.1| DNA polymerase III, alpha subunit, Gram-positive type
[Brevibacillus laterosporus GI-9]
Length = 1438
Score = 42.4 bits (98), Expect = 0.067, Method: Composition-based stats.
Identities = 39/107 (36%), Positives = 52/107 (48%), Gaps = 11/107 (10%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
+I VAHNA FD F+ R M P FLDTLPLAR L L L
Sbjct: 504 SILVAHNAE-FDQAFINACAIRVGME-PWTNSFLDTLPLARMLYPG----MRNYRLGTLA 557
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILERITSDLN----FTLSDLLKTS 133
+ F + L +AHRA+ D +LA + + + D+ TLS+L + S
Sbjct: 558 KRFNVELI-NAHRALDDTVALAKVFQLMLKDVKEAEIKTLSELNERS 603
>gi|254000498|ref|YP_003052561.1| DNA polymerase III subunit epsilon [Methylovorus glucosetrophus
SIP3-4]
gi|253987177|gb|ACT52034.1| DNA polymerase III, epsilon subunit [Methylovorus glucosetrophus
SIP3-4]
Length = 470
Score = 42.4 bits (98), Expect = 0.068, Method: Composition-based stats.
Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 8/94 (8%)
Query: 29 EIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQA 88
E A+ AHN R FD FL EF R +++ + L T+ L+R+L Q+ S SL +
Sbjct: 82 EGAVLCAHNVR-FDHGFLKNEFKRIGIDL--RQKVLCTVKLSRKLYPQHRS----HSLDS 134
Query: 89 LREYFGIPLEGSAHRAMSDVNSLASILERITSDL 122
+ E + G+ HRAM DV +L L ++L
Sbjct: 135 IIERHSLQC-GARHRAMGDVVALVDFLRAAEAEL 167
>gi|153814386|ref|ZP_01967054.1| hypothetical protein RUMTOR_00596 [Ruminococcus torques ATCC 27756]
gi|145848782|gb|EDK25700.1| DNA polymerase III, alpha subunit, Gram-positive type [Ruminococcus
torques ATCC 27756]
Length = 1459
Score = 42.4 bits (98), Expect = 0.068, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 8/92 (8%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
+ VAHNA FDV F+ + S+ + D + +LDT+ LAR L+ SK L +
Sbjct: 501 GVLVAHNAG-FDVGFIEQNCR--SLGLSDEFVYLDTVALARVLL----PTLSKYKLNIVA 553
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILERITSDL 122
+ I LE + HRA+ D + A I + T L
Sbjct: 554 KALNISLE-NHHRAVDDAEATAEIFVKFTEML 584
>gi|206603443|gb|EDZ39923.1| DNA polymerase III, epsilon subunit [Leptospirillum sp. Group II
'5-way CG']
Length = 265
Score = 42.0 bits (97), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 7/98 (7%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
+I VAHN FDV + +E + IP +DTLPL+R+++ + S L +
Sbjct: 83 SILVAHNLA-FDVGMVNRELILAN-RIPLGNMGIDTLPLSRKMLPE----LSSYRLGEIA 136
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILERITSDLNFTLSD 128
++ GI L S HRAM D+ +L IL + L T +
Sbjct: 137 KHMGI-LNESPHRAMGDLETLEKILSNLLESLPGTFDE 173
>gi|429762659|ref|ZP_19295045.1| DNA polymerase III, alpha subunit [Anaerostipes hadrus DSM 3319]
gi|429181293|gb|EKY22465.1| DNA polymerase III, alpha subunit [Anaerostipes hadrus DSM 3319]
Length = 1473
Score = 42.0 bits (97), Expect = 0.075, Method: Composition-based stats.
Identities = 35/113 (30%), Positives = 57/113 (50%), Gaps = 15/113 (13%)
Query: 10 MEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPL 69
+E+++P +++ E ++ VAHNA FD F+ + R +N+P + +DTL L
Sbjct: 512 IEEILPQFLRFC-------EGSVLVAHNAG-FDTGFIRENAKR--LNLPYDHTVVDTLGL 561
Query: 70 ARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITSDL 122
AR LM G K +L + ++ I LE + HRA+ D + I S L
Sbjct: 562 ARCLMGHLG----KFTLDNICKHLNIILE-THHRAVDDATATGKIFVEFISML 609
>gi|340354783|ref|ZP_08677481.1| ATP-dependent helicase DinG [Sporosarcina newyorkensis 2681]
gi|339623035|gb|EGQ27544.1| ATP-dependent helicase DinG [Sporosarcina newyorkensis 2681]
Length = 935
Score = 42.0 bits (97), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 41/84 (48%), Gaps = 11/84 (13%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNW--RFLDTLPLARELMKQNGSVSSKTSLQA 88
+FVAHN FDV FL KE RC ++ W + +DT+ LA+ L LQ
Sbjct: 98 CVFVAHNTD-FDVSFLQKELVRCGVS---KWQGKKIDTVELAKILY----PTLPGYRLQD 149
Query: 89 LREYFGIPLEGSAHRAMSDVNSLA 112
+ E IPL AHRA D + A
Sbjct: 150 IAEALNIPLH-QAHRADDDAKATA 172
>gi|336438098|ref|ZP_08617739.1| hypothetical protein HMPREF0990_00133 [Lachnospiraceae bacterium
1_1_57FAA]
gi|336015142|gb|EGN44966.1| hypothetical protein HMPREF0990_00133 [Lachnospiraceae bacterium
1_1_57FAA]
Length = 1353
Score = 42.0 bits (97), Expect = 0.078, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 8/92 (8%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
+ VAHNA FDV F+ + S+ + D + +LDT+ LAR L+ SK L +
Sbjct: 562 GVLVAHNAG-FDVGFIEQNCR--SLGLSDEFVYLDTVALARVLL----PTLSKYKLNIVA 614
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILERITSDL 122
+ I LE + HRA+ D + A I + T L
Sbjct: 615 KALNISLE-NHHRAVDDAEATAEIFVKFTEML 645
>gi|331087674|ref|ZP_08336601.1| DNA polymerase III [Lachnospiraceae bacterium 3_1_46FAA]
gi|330410366|gb|EGG89799.1| DNA polymerase III [Lachnospiraceae bacterium 3_1_46FAA]
Length = 1520
Score = 42.0 bits (97), Expect = 0.078, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 8/92 (8%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
+ VAHNA FDV F+ + S+ + D + +LDT+ LAR L+ SK L +
Sbjct: 562 GVLVAHNAG-FDVGFIEQNCR--SLGLSDEFVYLDTVALARVLL----PTLSKYKLNIVA 614
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILERITSDL 122
+ I LE + HRA+ D + A I + T L
Sbjct: 615 KALNISLE-NHHRAVDDAEATAEIFVKFTEML 645
>gi|317500099|ref|ZP_07958334.1| DNA polymerase III [Lachnospiraceae bacterium 8_1_57FAA]
gi|316898584|gb|EFV20620.1| DNA polymerase III [Lachnospiraceae bacterium 8_1_57FAA]
Length = 1520
Score = 42.0 bits (97), Expect = 0.078, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 8/92 (8%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
+ VAHNA FDV F+ + S+ + D + +LDT+ LAR L+ SK L +
Sbjct: 562 GVLVAHNAG-FDVGFIEQNCR--SLGLSDEFVYLDTVALARVLL----PTLSKYKLNIVA 614
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILERITSDL 122
+ I LE + HRA+ D + A I + T L
Sbjct: 615 KALNISLE-NHHRAVDDAEATAEIFVKFTEML 645
>gi|301612101|ref|XP_002935535.1| PREDICTED: three prime repair exonuclease 2-like [Xenopus
(Silurana) tropicalis]
Length = 230
Score = 42.0 bits (97), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 11/117 (9%)
Query: 12 DLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLAR 71
+L+ +V +++N + P VAHN +D P L EF + + +P + LD+L R
Sbjct: 93 NLVQLVKEFLNRQAQP---VCLVAHNGLFYDFPLLKAEFQQQNEELPGSLLCLDSLKAFR 149
Query: 72 ELMKQNG-----SVSSKTSLQALREYFGI-PLEGSAHRAMSDVNSLASILERITSDL 122
+L +Q+ + S T + R FG P++ +H A DV +L + S+L
Sbjct: 150 QLSQQDRRHQEFTKGSHTLTELYRRSFGKEPID--SHYAEGDVLTLIKVFMYKASEL 204
>gi|291558576|emb|CBL37376.1| DNA polymerase III catalytic subunit, PolC type [butyrate-producing
bacterium SSC/2]
Length = 1470
Score = 42.0 bits (97), Expect = 0.085, Method: Composition-based stats.
Identities = 35/113 (30%), Positives = 56/113 (49%), Gaps = 15/113 (13%)
Query: 10 MEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPL 69
+E+++P +K+ ++ VAHNA FD F+ + R +N+P + +DTL L
Sbjct: 509 IEEILPQFLKFCAG-------SVLVAHNAG-FDTGFIRENAKR--LNLPYDHTVVDTLGL 558
Query: 70 ARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITSDL 122
AR LM G K +L + ++ I LE + HRA+ D + I S L
Sbjct: 559 ARCLMGHLG----KFTLDNICKHLNIILE-THHRAVDDATATGKIFVEFISML 606
>gi|167766537|ref|ZP_02438590.1| hypothetical protein CLOSS21_01043 [Clostridium sp. SS2/1]
gi|167711660|gb|EDS22239.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
sp. SS2/1]
Length = 1473
Score = 42.0 bits (97), Expect = 0.087, Method: Composition-based stats.
Identities = 35/113 (30%), Positives = 56/113 (49%), Gaps = 15/113 (13%)
Query: 10 MEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPL 69
+E+++P +K+ ++ VAHNA FD F+ + R +N+P + +DTL L
Sbjct: 512 IEEILPQFLKFCAG-------SVLVAHNAG-FDTGFIRENAKR--LNLPYDHTVVDTLGL 561
Query: 70 ARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITSDL 122
AR LM G K +L + ++ I LE + HRA+ D + I S L
Sbjct: 562 ARCLMGHLG----KFTLDNICKHLNIILE-THHRAVDDATATGKIFVEFISML 609
>gi|379729757|ref|YP_005321953.1| putative DNA polymerase III subunit epsilon [Saprospira grandis
str. Lewin]
gi|378575368|gb|AFC24369.1| putative DNA polymerase III epsilon chain [Saprospira grandis str.
Lewin]
Length = 248
Score = 41.6 bits (96), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 9/86 (10%)
Query: 33 FVAHNARRFDVPFLAKEFSRCSMNIPD-NWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+N+ FD+P LA+EF+R + P + F+D + L R V+S +
Sbjct: 90 LAGYNSDNFDIPMLAEEFARAGIEYPTPDTHFVDVIKLER-------YVNSHKLGDTYQR 142
Query: 92 YFGIPLEGSAHRAMSDVNSLASILER 117
Y G L AH A++D+ + +ILE+
Sbjct: 143 YTGEELL-DAHDAIADIEATKTILEK 167
>gi|339017770|ref|ZP_08643918.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter
tropicalis NBRC 101654]
gi|338753091|dbj|GAA07222.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter
tropicalis NBRC 101654]
Length = 224
Score = 41.6 bits (96), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
Query: 33 FVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREY 92
+AHNAR FD FL E R D R +DTL +ARE SL AL
Sbjct: 87 LIAHNAR-FDFGFLNAELKRAGYKPLDMARMVDTLDMARERFP-----GMPNSLDALCRR 140
Query: 93 FGIPLEG-SAHRAMSDVNSLASI 114
FG+ L + H A+ D LA +
Sbjct: 141 FGVDLSARTTHNALLDCKLLADV 163
>gi|357146112|ref|XP_003573879.1| PREDICTED: uncharacterized protein LOC100834632 [Brachypodium
distachyon]
Length = 492
Score = 41.6 bits (96), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
++ HN RFD+P + + F+ + P+ +DTLPL L ++ G + + +L
Sbjct: 115 VWAGHNIVRFDLPRIREAFTEIGRSPPEPKGTIDTLPL---LTQRFGRRAGDMKMASLAN 171
Query: 92 YFGIPLEGSAHRAMSDV 108
YFG L HR++ DV
Sbjct: 172 YFG--LGRQKHRSLDDV 186
>gi|404401068|ref|ZP_10992652.1| exonuclease [Pseudomonas fuscovaginae UPB0736]
Length = 203
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 48/106 (45%), Gaps = 10/106 (9%)
Query: 17 VIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQ 76
V+ VN +G I +AHNA FD F E SR N F +L LAR LM
Sbjct: 73 VMNEVNEFVG---ITPLLAHNAA-FDQKFWDYELSRIKRTRLQN--FACSLLLARRLMPS 126
Query: 77 NGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITSDL 122
+ L L Y +P G AHRAM+D A++L + +L
Sbjct: 127 ----APNHKLGTLTTYAQLPNTGKAHRAMADAEMAANLLAHMAGEL 168
>gi|417552583|ref|ZP_12203653.1| exonuclease [Acinetobacter baumannii Naval-81]
gi|417561775|ref|ZP_12212654.1| exonuclease [Acinetobacter baumannii OIFC137]
gi|421200236|ref|ZP_15657396.1| exonuclease [Acinetobacter baumannii OIFC109]
gi|421453815|ref|ZP_15903166.1| exonuclease [Acinetobacter baumannii IS-123]
gi|421633889|ref|ZP_16074514.1| exonuclease [Acinetobacter baumannii Naval-13]
gi|421803309|ref|ZP_16239236.1| exonuclease [Acinetobacter baumannii WC-A-694]
gi|395524357|gb|EJG12446.1| exonuclease [Acinetobacter baumannii OIFC137]
gi|395563837|gb|EJG25489.1| exonuclease [Acinetobacter baumannii OIFC109]
gi|400213223|gb|EJO44178.1| exonuclease [Acinetobacter baumannii IS-123]
gi|400392842|gb|EJP59888.1| exonuclease [Acinetobacter baumannii Naval-81]
gi|408705531|gb|EKL50867.1| exonuclease [Acinetobacter baumannii Naval-13]
gi|410413295|gb|EKP65127.1| exonuclease [Acinetobacter baumannii WC-A-694]
Length = 211
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 15/125 (12%)
Query: 1 MVNRSYVPRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDN 60
MVN + P +E++IP ++ ++ + P +AHNA FD FL E R + P +
Sbjct: 65 MVN--HAPLVEEVIPSLLDFIGT--DP-----LLAHNAG-FDEKFLKAESIRQELT-PSH 113
Query: 61 WRFLDTLPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITS 120
+ +L LAR ++ S L A+ + F I G+AHRA +D A + +
Sbjct: 114 NGLICSLKLARRILPHQLSYR----LGAMADLFNIKFNGTAHRAEADAEVTAQLFNYLCM 169
Query: 121 DLNFT 125
++ T
Sbjct: 170 NICHT 174
>gi|397692047|ref|YP_006529928.1| DNA polymerase III polC-type [Candidatus Mycoplasma haemolamae str.
Purdue]
gi|397328777|gb|AFO51783.1| DNA polymerase III polC-type [Candidatus Mycoplasma haemolamae str.
Purdue]
Length = 211
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 55/116 (47%), Gaps = 7/116 (6%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
+ +AHN +RFD PFL + F + + P + + LD++ LA+ LM S +L+AL
Sbjct: 100 TVLIAHNGKRFDFPFLEESFKKAGIEPPTSPQ-LDSMLLAKYLMPGLKSY----ALEALL 154
Query: 91 EYFGIPLE-GSAHRAMSDVNSLASILERITSDL-NFTLSDLLKTSFRANFDHSKKN 144
E I E H A D + LA + + L N L L + +H ++N
Sbjct: 155 EENNITYERRELHSARYDASCLAKLWKDWEQRLINTGLDPFLAEDLKNLNEHLEEN 210
>gi|374610301|ref|ZP_09683093.1| DNA polymerase III, epsilon subunit [Mycobacterium tusciae JS617]
gi|373550711|gb|EHP77347.1| DNA polymerase III, epsilon subunit [Mycobacterium tusciae JS617]
Length = 197
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Query: 33 FVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREY 92
VAHNA FD FLA E RC +P L TL LA +L N + S L AL ++
Sbjct: 91 LVAHNAG-FDYAFLAAEAHRCGTELPVT-SVLCTLELAGQL---NLGLDS-LKLGALAQH 144
Query: 93 FGIPLEGSAHRAMSDVNSLASILERITS 120
+ IP + H A+ D LA+ L R+ +
Sbjct: 145 WNIP-QARPHDALDDARVLAAALPRMIT 171
>gi|420155213|ref|ZP_14662078.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
sp. MSTE9]
gi|394759506|gb|EJF42251.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
sp. MSTE9]
Length = 1450
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 48/103 (46%), Gaps = 14/103 (13%)
Query: 28 GEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQ 87
GE + +AHNA FD F+ R M+ P + ++DTLP+ R ++K L
Sbjct: 510 GEKPVLLAHNAA-FDTSFMHAAAERHGMDFP--YPYIDTLPMCRSMLKD----IKNYKLD 562
Query: 88 ALREYFGI-PLEGSAHRAMSDVNSLASI----LERITSDLNFT 125
+ +Y + P + HRA D LA I L+R+ D T
Sbjct: 563 TVAKYLKLDPF--NHHRACDDAAVLAKIFQNLLQRLKEDTGAT 603
>gi|154505436|ref|ZP_02042174.1| hypothetical protein RUMGNA_02959 [Ruminococcus gnavus ATCC 29149]
gi|336434007|ref|ZP_08613813.1| hypothetical protein HMPREF0991_02932 [Lachnospiraceae bacterium
2_1_58FAA]
gi|153794279|gb|EDN76699.1| topoisomerase DNA-binding C4 zinc finger domain protein
[Ruminococcus gnavus ATCC 29149]
gi|336014746|gb|EGN44580.1| hypothetical protein HMPREF0991_02932 [Lachnospiraceae bacterium
2_1_58FAA]
Length = 219
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
I V HN + FD+ F+ +E N F+DTL +AR+ + + L L E
Sbjct: 95 ILVGHNIQSFDMKFIYREVEELFQETVSN-DFIDTLYMARKCLPE----LKHHRLTDLAE 149
Query: 92 YFGIPLEGSAHRAMSDV 108
+FGI +G AHRA++D
Sbjct: 150 HFGISSKG-AHRALNDC 165
>gi|218296944|ref|ZP_03497630.1| ATP-dependent DNA helicase, RecQ family [Thermus aquaticus Y51MC23]
gi|218242647|gb|EED09183.1| ATP-dependent DNA helicase, RecQ family [Thermus aquaticus Y51MC23]
Length = 1684
Score = 41.6 bits (96), Expect = 0.12, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 33 FVAHNARRFDVPFLAKEFSRCSMNI-PDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+ HN R+D+P L + +N+ P+ +R LDTL LA + + L L
Sbjct: 87 LLGHNLLRYDLPLLERALGEVGLNLPPEAYRALDTLRLAHLVFPIPKDGLAGYRLGDLYH 146
Query: 92 YFGIPLEGSAHRAMSDVNSLASILERIT 119
Y AHRA +DV + ILE ++
Sbjct: 147 YLTQEELEGAHRAATDVGATWRILEALS 174
>gi|66047527|ref|YP_237368.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
syringae B728a]
gi|63258234|gb|AAY39330.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv.
syringae B728a]
Length = 204
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 51/104 (49%), Gaps = 13/104 (12%)
Query: 28 GEIAIFV------AHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVS 81
G++A FV AHNA FD F E SR + F +L LAR LM G+ +
Sbjct: 76 GDVADFVGSTPLVAHNAS-FDQKFWDYELSRIQRTREQS--FACSLLLARRLMP--GAPN 130
Query: 82 SKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITSDLNFT 125
K L L Y +P G AHRAM+D A++ +T++L T
Sbjct: 131 HK--LGTLTRYARLPDTGKAHRAMADAEMAANLTAHLTNELRQT 172
>gi|422671767|ref|ZP_16731132.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv.
aceris str. M302273]
gi|330969506|gb|EGH69572.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv.
aceris str. M302273]
Length = 203
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 51/104 (49%), Gaps = 13/104 (12%)
Query: 28 GEIAIFV------AHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVS 81
G++A FV AHNA FD F E SR + F +L LAR LM G+ +
Sbjct: 75 GDVADFVGSTPLVAHNAS-FDQKFWDYELSRIQRTREQS--FACSLLLARRLMP--GAPN 129
Query: 82 SKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITSDLNFT 125
K L L Y +P G AHRAM+D A++ +T++L T
Sbjct: 130 HK--LGTLTRYARLPDTGKAHRAMADAEMAANLTAHLTNELRQT 171
>gi|409422578|ref|ZP_11259669.1| DNA polymerase III subunit epsilon [Pseudomonas sp. HYS]
Length = 200
Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 48/100 (48%), Gaps = 13/100 (13%)
Query: 29 EIAIFV------AHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSS 82
E+A FV AHNA FD F E S+ + + RF ++ LAR LM +
Sbjct: 76 EVAEFVGDTPMLAHNAS-FDQKFWDYELSQIGRS--RSQRFACSMLLARRLMPS----AP 128
Query: 83 KTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITSDL 122
L L + G+P G+AHRAM+D A++ + + L
Sbjct: 129 NHKLGTLTRWAGLPDTGTAHRAMADAEMAANLAQHLAGQL 168
>gi|419623125|ref|ZP_14156257.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni LMG 23218]
gi|419656005|ref|ZP_14186835.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 2008-988]
gi|419663584|ref|ZP_14193777.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 1997-4]
gi|419689577|ref|ZP_14217801.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 1893]
gi|380601731|gb|EIB22038.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni LMG 23218]
gi|380636106|gb|EIB53843.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 2008-988]
gi|380642622|gb|EIB59882.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 1997-4]
gi|380670581|gb|EIB85829.1| DNA polymerase III subunit epsilon [Campylobacter jejuni subsp.
jejuni 1893]
Length = 253
Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 9/73 (12%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
+IFVAHN R FD F++K + CS I N R + T+ A+ ++ S K L+ L+
Sbjct: 149 SIFVAHNVR-FDYSFISKALNECSFGILLNRR-ICTIEFAQCCIE-----SPKYKLEVLK 201
Query: 91 EYFGIPLEGSAHR 103
E+ G+ E HR
Sbjct: 202 EFLGV--ENMHHR 212
>gi|82548268|gb|ABB82959.1| putative DNA polymerase type III, exonuclease domain [uncultured
organism HF70_19B12]
Length = 270
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
AI V HN FD F+ EF R +P + +DTL LAR L + + +L L
Sbjct: 88 AIIVGHNINAFDWRFIEFEFMRVGEAVPSPYALVDTLELARGL-----RIPGRHTLGHLC 142
Query: 91 EYFGIPLE 98
+ +GI L+
Sbjct: 143 KRYGIGLD 150
>gi|384449083|ref|YP_005661685.1| DNA polymerase III subunit epsilon family exonuclease
[Chlamydophila pneumoniae LPCoLN]
gi|269302439|gb|ACZ32539.1| exonuclease, DNA polymerase III, epsilon subunit family
[Chlamydophila pneumoniae LPCoLN]
Length = 249
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
Query: 33 FVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREY 92
++ ++ FD+ L++E R + +DTL LA+E S SL++L +
Sbjct: 90 YIVGHSVGFDLQVLSQEMERIGETFLSKYTIIDTLRLAKEY-----GDSPNNSLESLAVH 144
Query: 93 FGIPLEGSAHRAMSDV 108
F +P +G+ HRAM DV
Sbjct: 145 FNVPYDGN-HRAMKDV 159
>gi|293402030|ref|ZP_06646169.1| DNA polymerase III, alpha subunit, Gram-positive type
[Erysipelotrichaceae bacterium 5_2_54FAA]
gi|291304422|gb|EFE45672.1| DNA polymerase III, alpha subunit, Gram-positive type
[Erysipelotrichaceae bacterium 5_2_54FAA]
Length = 1443
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 43/93 (46%), Gaps = 8/93 (8%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
+I VAHNA FD FL E R P +DTL LAR +M + G L L
Sbjct: 475 SILVAHNAS-FDYGFLNAELERIGRK-PLMNPVIDTLDLARSMMDRKGY-----RLGNLA 527
Query: 91 EYFGIPL-EGSAHRAMSDVNSLASILERITSDL 122
+GI E AHRA D LA + + +DL
Sbjct: 528 RQYGIRYDEDVAHRADYDAEVLAQVFMHMLNDL 560
>gi|297802094|ref|XP_002868931.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297314767|gb|EFH45190.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 227
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 12/115 (10%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
P ED+ + +N R I+ HN RRFD + + F+ P+ +D+L
Sbjct: 79 PSFEDVAEKIYGLLNGR-------IWAGHNIRRFDCIRIKEAFAEIGKAAPEPSGIIDSL 131
Query: 68 PLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITSDL 122
L L + G + + +L YFG+ ++ HR++ DV +L+ + L
Sbjct: 132 GL---LSDKFGKRAGNMKMASLAAYFGLGVQ--KHRSLDDVRMNLEVLKHCATVL 181
>gi|373451494|ref|ZP_09543415.1| DNA polymerase III, alpha subunit, Gram-positive type [Eubacterium
sp. 3_1_31]
gi|371968297|gb|EHO85758.1| DNA polymerase III, alpha subunit, Gram-positive type [Eubacterium
sp. 3_1_31]
Length = 1443
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 43/93 (46%), Gaps = 8/93 (8%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
+I VAHNA FD FL E R P +DTL LAR +M + G L L
Sbjct: 475 SILVAHNAS-FDYGFLNAELERIGRK-PLMNPVIDTLDLARSMMDRKGY-----RLGNLA 527
Query: 91 EYFGIPL-EGSAHRAMSDVNSLASILERITSDL 122
+GI E AHRA D LA + + +DL
Sbjct: 528 RQYGIRYDEDVAHRADYDAEVLAQVFMHMLNDL 560
>gi|70732717|ref|YP_262480.1| exonuclease [Pseudomonas protegens Pf-5]
gi|68347016|gb|AAY94622.1| exonuclease family protein [Pseudomonas protegens Pf-5]
Length = 203
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 48/106 (45%), Gaps = 10/106 (9%)
Query: 17 VIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQ 76
V+ VN +G I +AHNA FD F E R N F +L LAR LM
Sbjct: 73 VMNEVNEFVG---ITPLLAHNAA-FDQKFWDFELGRIKRTRLQN--FACSLLLARRLM-- 124
Query: 77 NGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITSDL 122
+ L L + G+P G AHRAM+D A+++ + +L
Sbjct: 125 --PAAPNHKLGTLTSFAGLPHTGQAHRAMADAEMAANLVAHLAGEL 168
>gi|384565060|ref|ZP_10012164.1| exonuclease, DNA polymerase III, epsilon subunit family, partial
[Saccharomonospora glauca K62]
gi|384520914|gb|EIE98109.1| exonuclease, DNA polymerase III, epsilon subunit family, partial
[Saccharomonospora glauca K62]
Length = 462
Score = 41.2 bits (95), Expect = 0.14, Method: Composition-based stats.
Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 14/118 (11%)
Query: 5 SYVPRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFL 64
S PR+E ++P +++ + A+ VAHNA FDV FL + P +
Sbjct: 77 SSAPRIEQVLPAFLEFADG-------AVLVAHNAG-FDVSFLKAACRVHGFDWPKP-TVV 127
Query: 65 DTLPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSD----VNSLASILERI 118
TL LAR ++++ L AL FG + HRA+ D V+ L +LER+
Sbjct: 128 CTLKLARRVLRRESRERQSYRLSALAPLFGARTTPN-HRALDDAKATVDVLHGLLERL 184
>gi|71734762|ref|YP_276473.1| exonuclease [Pseudomonas syringae pv. phaseolicola 1448A]
gi|71555315|gb|AAZ34526.1| exonuclease [Pseudomonas syringae pv. phaseolicola 1448A]
Length = 204
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 47/93 (50%), Gaps = 7/93 (7%)
Query: 33 FVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREY 92
VAHNA FD F E SR + + F ++ LAR LM G+ + K L L Y
Sbjct: 87 LVAHNAS-FDQKFWDYELSRIQRKLEQS--FACSMLLARRLMP--GAPNHK--LGTLTSY 139
Query: 93 FGIPLEGSAHRAMSDVNSLASILERITSDLNFT 125
+P G AHRAM+D A++ +T++L T
Sbjct: 140 ARLPNTGKAHRAMADAEMAANLTAYLTNELRNT 172
>gi|330811888|ref|YP_004356350.1| exonuclease [Pseudomonas brassicacearum subsp. brassicacearum
NFM421]
gi|378953003|ref|YP_005210491.1| DNA polymerase III subunit alpha [Pseudomonas fluorescens F113]
gi|423699458|ref|ZP_17673948.1| exonuclease family protein [Pseudomonas fluorescens Q8r1-96]
gi|327379996|gb|AEA71346.1| Putative exonuclease [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|359763017|gb|AEV65096.1| DNA polymerase III alpha subunit [Pseudomonas fluorescens F113]
gi|387996136|gb|EIK57466.1| exonuclease family protein [Pseudomonas fluorescens Q8r1-96]
Length = 203
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 47/106 (44%), Gaps = 10/106 (9%)
Query: 17 VIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQ 76
V+ VN +G I +AHNA FD F E R N F +L LAR LM
Sbjct: 73 VMNEVNEFVG---ITPLLAHNAA-FDQKFWDFELGRIKRTRLQN--FACSLLLARRLM-- 124
Query: 77 NGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITSDL 122
+ L L + G+P G AHRAM+D A++ + S L
Sbjct: 125 --PAAPNHKLGTLNTFAGLPHTGQAHRAMADAEMAANLTAHLASQL 168
>gi|393723047|ref|ZP_10342974.1| DNA polymerase III subunit epsilon [Sphingomonas sp. PAMC 26605]
Length = 230
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 55/123 (44%), Gaps = 18/123 (14%)
Query: 6 YVPRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLD 65
+V R+EDL+ + G+ + VAHNA FD FL E RC R +D
Sbjct: 70 FVQRVEDLLDFI----------GD-SPLVAHNAS-FDFGFLNGELQRCGRATVAMHRMVD 117
Query: 66 TLPLARELMKQNGSVSSKTSLQALREYFGIPLEG-SAHRAMSDVNSLASILERITSDLNF 124
T+ +AR M+ G +K SL AL +GI + H A+ D L+ + +T
Sbjct: 118 TVAMAR--MRHPG---AKHSLDALCNRYGIDRSHRTVHGALLDAQLLSQVYVELTGGRQI 172
Query: 125 TLS 127
L
Sbjct: 173 GLG 175
>gi|388547856|ref|ZP_10151115.1| putative exonuclease [Pseudomonas sp. M47T1]
gi|388274014|gb|EIK93617.1| putative exonuclease [Pseudomonas sp. M47T1]
Length = 203
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 13/104 (12%)
Query: 28 GEIAIFV------AHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVS 81
GE+A FV AHNA FD F +F + RF ++ LAR LM +
Sbjct: 75 GEVADFVGDTPLLAHNAS-FDQRFW--DFELGLLRRERRQRFACSMLLARRLMPS----A 127
Query: 82 SKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITSDLNFT 125
L L + G+P G+AHRAM+D A++ + + +L T
Sbjct: 128 PNHKLGTLTRWAGLPDTGTAHRAMADAEMAANLTQHLAGELRGT 171
>gi|393762080|ref|ZP_10350709.1| Exonuclease RNase T and DNA polymerase III [Alishewanella agri
BL06]
gi|392607112|gb|EIW89994.1| Exonuclease RNase T and DNA polymerase III [Alishewanella agri
BL06]
Length = 219
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 56/112 (50%), Gaps = 11/112 (9%)
Query: 27 PGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSL 86
PG +F+AH+ R D FL F R P +F+DTL + M++ G+V K +L
Sbjct: 113 PG--YLFLAHHCR-LDRAFLQLAFQRQYGKAP-RMQFIDTLNIEWHRMQKQGTVMKKDAL 168
Query: 87 ---QALREYFGIPLEGSAHRAMSDVNSLA--SILERITSDLNFTLSDLLKTS 133
Q L+ Y +P+ + H A+ D S A + + S + TL D+L+ S
Sbjct: 169 RLPQCLQRY-NLPI-SAQHHALEDAYSCALLYLTQLKKSHPDITLGDILQQS 218
>gi|148555737|ref|YP_001263319.1| DNA polymerase III subunit epsilon [Sphingomonas wittichii RW1]
gi|148500927|gb|ABQ69181.1| DNA polymerase III, epsilon subunit [Sphingomonas wittichii RW1]
Length = 234
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
A VAHNA FD FL E C +I D R +DTL +AR++ +K SL AL
Sbjct: 84 APLVAHNAS-FDFGFLNWELGACGRSIVDMGRMVDTLQIARKMHP-----GAKHSLDALC 137
Query: 91 EYFGI 95
+GI
Sbjct: 138 SRYGI 142
>gi|405959347|gb|EKC25395.1| DNA polymerase III polC-type [Crassostrea gigas]
Length = 564
Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 58/125 (46%), Gaps = 19/125 (15%)
Query: 17 VIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRF----LDTLPLARE 72
+I YV+ R P I V HN FD+P L+K+ + + + R LDTL LAR+
Sbjct: 382 LIDYVSKREKP----ILVGHNVLSFDIPILSKKLQEHGL-LQEFLRHVSGCLDTLRLARK 436
Query: 73 LMKQN--GSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITSDLNFTLSDLL 130
L + G+ +T +Q L G + AH A++DV +L E S F +D
Sbjct: 437 LFSKETVGNYKQQTLVQVL---LGKSYQ--AHDALADVKNL---YELFVSKFTFKETDAF 488
Query: 131 KTSFR 135
+F
Sbjct: 489 PFNFH 493
>gi|315122041|ref|YP_004062530.1| DNA polymerase III subunit epsilon [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495443|gb|ADR52042.1| DNA polymerase III subunit epsilon [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 244
Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 7/85 (8%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
A ++AHNA+ FDV F+ E R + + D R +DTL +AR SS+ L +L
Sbjct: 91 AEWIAHNAK-FDVGFINAELQRINKDPLDPSRIVDTLSIARR-----KHPSSRNDLNSLC 144
Query: 91 EYFGIPLEG-SAHRAMSDVNSLASI 114
+ +GI + S H A+ D + LA +
Sbjct: 145 KRYGITISHRSKHGALLDSHLLADV 169
>gi|326496743|dbj|BAJ98398.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 485
Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
++ HN RFDVP + + F P+ +DTLPL L ++ G + + +L
Sbjct: 112 VWAGHNIVRFDVPRIREAFIEIGRPPPEPKGMIDTLPL---LTQRFGRRAGDMKMASLAN 168
Query: 92 YFGIPLEGSAHRAMSDV 108
YFG+ + HR++ DV
Sbjct: 169 YFGLGRQ--KHRSLDDV 183
>gi|268316050|ref|YP_003289769.1| Exonuclease RNase T and DNA polymerase III [Rhodothermus marinus
DSM 4252]
gi|345302362|ref|YP_004824264.1| exonuclease RNase T and DNA polymerase III [Rhodothermus marinus
SG0.5JP17-172]
gi|262333584|gb|ACY47381.1| Exonuclease RNase T and DNA polymerase III [Rhodothermus marinus
DSM 4252]
gi|345111595|gb|AEN72427.1| Exonuclease RNase T and DNA polymerase III [Rhodothermus marinus
SG0.5JP17-172]
Length = 167
Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 7/99 (7%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
+ V HN R FD F+ E R + +P RF+DTL LAR L+ + + L AL
Sbjct: 64 GVIVGHNLR-FDFWFVTYEAGRLGLAVPPI-RFIDTLGLARRLLPEQ----ADYRLVALL 117
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILERITSDLNF-TLSD 128
GI + H A++D + ++ ++ TL+D
Sbjct: 118 HALGIEPDKPLHTAVADAQATRALFWKLVERGKLRTLAD 156
>gi|124265242|ref|YP_001019246.1| DNA-directed DNA polymerase [Methylibium petroleiphilum PM1]
gi|124258017|gb|ABM93011.1| DNA-directed DNA polymerase [Methylibium petroleiphilum PM1]
Length = 208
Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 33 FVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREY 92
VAHNA FD F E +R + F TL LAR L + + L L +
Sbjct: 86 LVAHNAA-FDRGFWQAERARAGCDEDAAHAFACTLLLARRLYPE----APNHRLGTLAKL 140
Query: 93 FGIPLEGSAHRAMSDVNSLASILERITSDL 122
+P G AHRA++D + A +L R+ DL
Sbjct: 141 HALPDGGRAHRALADAETAAHLLLRMQDDL 170
>gi|317048373|ref|YP_004116021.1| DNA polymerase III subunit epsilon [Pantoea sp. At-9b]
gi|316949990|gb|ADU69465.1| DNA polymerase III, epsilon subunit [Pantoea sp. At-9b]
Length = 222
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 59/119 (49%), Gaps = 19/119 (15%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
++VAHNA FD P L + I W + TL LAR+L + + S T+ Q LR
Sbjct: 79 VYVAHNAA-FDRPKLPQ--------ITAPW--ICTLKLARKLYPE---LESHTN-QYLRY 123
Query: 92 YF----GIPLEGSAHRAMSDVNSLASILERITSDLNFTLSDLLKTSFRANFDHSKKNKK 146
+F +P AHRA+ D A++L R+ D+ T++ + S R + H+ + K
Sbjct: 124 HFMLDVDVPEGLHAHRALYDCYVTAALLIRLNRDVQLTIAQMRDISSRPSLLHTMRFGK 182
>gi|403306825|ref|XP_003943920.1| PREDICTED: three prime repair exonuclease 2 [Saimiri boliviensis
boliviensis]
Length = 236
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 47/113 (41%), Gaps = 11/113 (9%)
Query: 20 YVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGS 79
+++ + GP VAHN +D P L E R +P + LDTLP R L + +
Sbjct: 104 FLSRQAGP---ICLVAHNGFDYDFPLLCAELRRLGARLPRDTVCLDTLPALRGLDRAHSH 160
Query: 80 VSSKTSLQA------LREYFGIPLEGSAHRAMSDVNSLASI-LERITSDLNFT 125
+ Q YF G AH A DV++L I L R T L +
Sbjct: 161 GTRAQGRQGYSLGSLFHRYFQAEPSG-AHSAEGDVHTLLLIFLHRATELLTWA 212
>gi|74009144|ref|XP_549356.2| PREDICTED: three prime repair exonuclease 2 [Canis lupus
familiaris]
Length = 236
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 10/98 (10%)
Query: 20 YVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGS 79
+++ + GP VAHN +D P L E R ++P + LDTLP R L + +
Sbjct: 104 FLSRQEGP---VCLVAHNGFDYDFPLLCTELRRLGAHLPPDTTCLDTLPALRSLDRAHSH 160
Query: 80 VSSKTSLQA------LREYFGIPLEGSAHRAMSDVNSL 111
+ + R YF +AH A DV++L
Sbjct: 161 GTRAQGCKGYSLGSLFRRYFRAE-PSAAHSAEGDVHTL 197
>gi|302387397|ref|YP_003823219.1| DNA polymerase III subunit epsilon [Clostridium saccharolyticum
WM1]
gi|302198025|gb|ADL05596.1| DNA polymerase III, epsilon subunit [Clostridium saccharolyticum
WM1]
Length = 222
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 15/102 (14%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRC-SMNIPDNWRFLDT 66
P +++++P + ++ E I V HN + FD+ FL + +P+++ +DT
Sbjct: 81 PGLKEVLPDFLSFI-------EGEILVGHNIQSFDLLFLYRAAQELFGKEVPNDY--VDT 131
Query: 67 LPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDV 108
L +A+ + Q G + L + YF I EG AHRA+SD
Sbjct: 132 LFMAKTTLPQLG----RHRLTDISAYFHINTEG-AHRALSDC 168
>gi|229918664|ref|YP_002887310.1| DNA polymerase III subunit alpha [Exiguobacterium sp. AT1b]
gi|229470093|gb|ACQ71865.1| DNA polymerase III, alpha subunit [Exiguobacterium sp. AT1b]
Length = 1430
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 44/88 (50%), Gaps = 7/88 (7%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
+I VAHNA FD+ FL R + PD++ +DTL LAR LM L L
Sbjct: 489 SILVAHNAS-FDMGFLEATL-RSGGHEPDDYPVIDTLELARTLM----PTLKNHRLNTLA 542
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILERI 118
+ F I L HRA+ D + A +L ++
Sbjct: 543 KRFDIELT-QHHRAIYDAEATAYLLMKL 569
>gi|407419836|gb|EKF38362.1| mitochondrial DNA polymerase I protein B, putative [Trypanosoma
cruzi marinkellei]
Length = 1417
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 57/125 (45%), Gaps = 18/125 (14%)
Query: 8 PRMEDLIPIVIKYV---NSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFL 64
PR+ ++ + +Y+ ++ P E+ + + HN D P L + F R + + DN F
Sbjct: 835 PRLPEVTRALARYLRLDEAQSDPNEVVVLIGHNVFALDEPLLRRAFEREGVCM-DNILFC 893
Query: 65 DTLPLARELMKQ-NGS-------------VSSKTSLQALREYFGIPLEGSAHRAMSDVNS 110
D+L L + L ++ GS +++ L +L E + +G HRA D +
Sbjct: 894 DSLVLLKALKRELQGSTENTRVDRGVLETLTTSLRLSSLVEGLHVEADGLLHRADKDAKT 953
Query: 111 LASIL 115
L +L
Sbjct: 954 LWFVL 958
>gi|294668271|ref|ZP_06733376.1| hypothetical protein NEIELOOT_00182 [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291309790|gb|EFE51033.1| hypothetical protein NEIELOOT_00182 [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 493
Score = 40.8 bits (94), Expect = 0.18, Method: Composition-based stats.
Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 8/85 (9%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+ +AHN++ FD FL EFSRC ++ L T+ L+R L Q K +L ++ E
Sbjct: 100 LLLAHNSK-FDYTFLRHEFSRCRLSYAAP--TLCTVQLSRRLYPQ----FFKHNLDSIIE 152
Query: 92 YFGIPLEGSAHRAMSDVNSLASILE 116
I + S HRAM+DV +LA LE
Sbjct: 153 RHQIAVS-SRHRAMNDVLALADYLE 176
>gi|240256240|ref|NP_195691.4| exonuclease/ nucleic acid binding protein [Arabidopsis thaliana]
gi|332661722|gb|AEE87122.1| exonuclease/ nucleic acid binding protein [Arabidopsis thaliana]
Length = 255
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 12/116 (10%)
Query: 7 VPRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDT 66
P ED+ + +N R I+ HN RRFD + + F+ P+ +D+
Sbjct: 78 APSFEDVAEKIHGLLNGR-------IWAGHNIRRFDCVRIKEAFAEIGKAAPEPSGIIDS 130
Query: 67 LPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITSDL 122
L L L + G + + +L YFG+ ++ HR++ DV +L+ + L
Sbjct: 131 LGL---LSDKFGKRAGNMKMASLAAYFGLGVQ--KHRSLDDVRMNLEVLKHCATVL 181
>gi|239631939|ref|ZP_04674970.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei
8700:2]
gi|239526404|gb|EEQ65405.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei
8700:2]
Length = 309
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 38/95 (40%), Gaps = 19/95 (20%)
Query: 33 FVAHNARRFDVPFLAKE-FSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
V HN RFD+PF+ F + D WR L L L+E
Sbjct: 126 LVGHNIIRFDIPFIVNNGFYYEDIEALDTWRLAKNKDFPEPL--------KNLKLPTLKE 177
Query: 92 YFGIPLEGSAHRAMSDVNSLASI--------LERI 118
YFGI GS+H A+ D + ++ LERI
Sbjct: 178 YFGI--SGSSHNALDDCKTTITVYRHLRDNKLERI 210
>gi|440742526|ref|ZP_20921851.1| DNA polymerase III subunit epsilon [Pseudomonas syringae BRIP39023]
gi|440377363|gb|ELQ14012.1| DNA polymerase III subunit epsilon [Pseudomonas syringae BRIP39023]
Length = 203
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 51/104 (49%), Gaps = 13/104 (12%)
Query: 28 GEIAIFV------AHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVS 81
G++A FV AHNA FD F E SR + F +L LAR LM G+ +
Sbjct: 75 GDVADFVGSTPLVAHNAS-FDQKFWDYELSRIQRTREQS--FACSLLLARRLMP--GAPN 129
Query: 82 SKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITSDLNFT 125
K L L Y +P G AHRAM+D A++ +T++L T
Sbjct: 130 HK--LGTLTRYARLPDTGKAHRAMADAEMAANLTVHLTNELRQT 171
>gi|157821045|ref|NP_001101050.1| three prime repair exonuclease 2 [Rattus norvegicus]
gi|149029940|gb|EDL85052.1| rCG43845 [Rattus norvegicus]
Length = 236
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLAREL--MKQNGSVSS---KTSL 86
VAHN +D P L E R ++P + LDTLP R L + +G+ + SL
Sbjct: 113 CLVAHNGFDYDFPLLCTELQRLGAHLPRDTVCLDTLPALRGLDRVHSHGTRAQGRKSYSL 172
Query: 87 QALREYFGIPLEGSAHRAMSDVNSL 111
+L + +AH A DVN+L
Sbjct: 173 ASLFHRYFQAEPSAAHSAEGDVNTL 197
>gi|423097462|ref|ZP_17085258.1| exonuclease family protein [Pseudomonas fluorescens Q2-87]
gi|397886034|gb|EJL02517.1| exonuclease family protein [Pseudomonas fluorescens Q2-87]
Length = 203
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 48/106 (45%), Gaps = 10/106 (9%)
Query: 17 VIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQ 76
V+ VN +G I +AHNA FD F E R N F +L LAR LM
Sbjct: 73 VMNEVNEFVG---ITPLLAHNAA-FDQKFWDFELGRIKRTRLQN--FACSLLLARRLM-- 124
Query: 77 NGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITSDL 122
+ L L + G+P G AHRAM+D A++ + ++L
Sbjct: 125 --PAAPNHKLGTLNTFAGLPHTGQAHRAMADAEMAANLTAHLAAEL 168
>gi|357979080|emb|CCE66701.1| DNA polymerase III, polC-type [Candidatus Mycoplasma haemominutum
'Birmingham 1']
Length = 1444
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
I +AHN FD+PFL ++ + ++ P + LDTL LA+ L K S S + A +
Sbjct: 483 TILIAHNGADFDLPFLNAQYKKANLE-PLDMPLLDTLLLAKALEKDKKSKSYSLAAVAKK 541
Query: 91 EYFGIPLEGSAHRAMSDVNSLASI 114
I +E H + D + LA +
Sbjct: 542 MCVNI-VEQELHSSEYDTHCLARL 564
>gi|422640569|ref|ZP_16703995.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae Cit 7]
gi|330952959|gb|EGH53219.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae Cit 7]
Length = 203
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 51/104 (49%), Gaps = 13/104 (12%)
Query: 28 GEIAIFV------AHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVS 81
G++A FV AHNA FD F E SR + F +L LAR LM G+ +
Sbjct: 75 GDVADFVGSTPLVAHNAS-FDQKFWDYELSRIQRTREQS--FACSLLLARRLMP--GAPN 129
Query: 82 SKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITSDLNFT 125
K L L Y +P G AHRAM+D A++ +T++L T
Sbjct: 130 HK--LGTLTRYARLPDTGKAHRAMADAEMAANLTAYLTNELRQT 171
>gi|393720402|ref|ZP_10340329.1| DNA polymerase III subunit epsilon [Sphingomonas echinoides ATCC
14820]
Length = 229
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 43/95 (45%), Gaps = 7/95 (7%)
Query: 33 FVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREY 92
VAHNA FD FL E RC R +DT+ +AR M+ G +K SL AL
Sbjct: 86 LVAHNAS-FDFGFLNGELKRCGRTTVAMERMVDTVAMAR--MRHPG---AKHSLDALCSR 139
Query: 93 FGIPLEG-SAHRAMSDVNSLASILERITSDLNFTL 126
+GI + H A+ D LA + +T L
Sbjct: 140 YGIDRSHRTLHGALLDAQLLAQVYVELTGGRQIGL 174
>gi|379728209|ref|YP_005320405.1| DNA polymerase III subunit epsilon [Saprospira grandis str. Lewin]
gi|378573820|gb|AFC22821.1| DNA polymerase III, epsilon subunit [Saprospira grandis str. Lewin]
Length = 267
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 9/85 (10%)
Query: 33 FVAHNARRFDVPFLAKEFSRCSMNIP-DNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+N+ RFD+P L +EFSR + R +D + + ++ +T ALR
Sbjct: 91 LAGYNSNRFDIPVLMEEFSRAGFEFSIEGRRLIDAMQIFYKM-------EPRTLKAALRF 143
Query: 92 YFGIPLEGSAHRAMSDVNSLASILE 116
Y G LE +AH A++D + A +L+
Sbjct: 144 YCGQNLE-NAHDALADTRATAEVLK 167
>gi|333375821|ref|ZP_08467621.1| DNA polymerase III, epsilon subunit [Kingella kingae ATCC 23330]
gi|332969609|gb|EGK08627.1| DNA polymerase III, epsilon subunit [Kingella kingae ATCC 23330]
Length = 463
Score = 40.8 bits (94), Expect = 0.20, Method: Composition-based stats.
Identities = 36/117 (30%), Positives = 60/117 (51%), Gaps = 17/117 (14%)
Query: 1 MVNRSYVPRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDN 60
MV R+ P + ++P ++ + A+F+AHN+R FD F E R +
Sbjct: 85 MVRRA--PALAKILPDLLPLLRG-------ALFIAHNSR-FDYTFWRNECQRAGVAFAA- 133
Query: 61 WRFLDTLPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILER 117
L ++ L+R+L Q K SL ++ E G+ + S HRAM+DV++LA L++
Sbjct: 134 -LTLCSVQLSRKLYPQ----YHKHSLDSIIERNGLIVP-SRHRAMADVDALAQFLQQ 184
>gi|302184787|ref|ZP_07261460.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv.
syringae 642]
Length = 203
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 51/104 (49%), Gaps = 13/104 (12%)
Query: 28 GEIAIFV------AHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVS 81
G++A FV AHNA FD F E SR + F +L LAR LM G+ +
Sbjct: 75 GDVADFVGSTPLVAHNAS-FDQKFWDYELSRIQRTREQS--FACSLLLARRLMP--GAPN 129
Query: 82 SKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITSDLNFT 125
K L L Y +P G AHRAM+D A++ +T++L T
Sbjct: 130 HK--LGTLTRYARLPDTGKAHRAMADAEMAANLTVHLTNELRQT 171
>gi|443642243|ref|ZP_21126093.1| DNA polymerase III, epsylon subunit [Pseudomonas syringae pv.
syringae B64]
gi|443282260|gb|ELS41265.1| DNA polymerase III, epsylon subunit [Pseudomonas syringae pv.
syringae B64]
Length = 204
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 51/104 (49%), Gaps = 13/104 (12%)
Query: 28 GEIAIFV------AHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVS 81
G++A FV AHNA FD F E SR + F +L LAR LM G+ +
Sbjct: 76 GDVADFVGSTPLVAHNAS-FDQKFWDYELSRIERTREQS--FACSLLLARRLMP--GAPN 130
Query: 82 SKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITSDLNFT 125
K L L Y +P G AHRAM+D A++ +T++L T
Sbjct: 131 HK--LGTLTRYARLPDTGKAHRAMADAEMAANLTAYLTNELRQT 172
>gi|82703123|ref|YP_412689.1| DNA polymerase III subunit epsilon [Nitrosospira multiformis ATCC
25196]
gi|82411188|gb|ABB75297.1| DNA polymerase III, epsilon subunit [Nitrosospira multiformis ATCC
25196]
Length = 463
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 44/93 (47%), Gaps = 8/93 (8%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
A+ AHN R FD FL E+ R M R L T L+R+L Q+ L A+
Sbjct: 85 AVLAAHNVR-FDYGFLKNEYRR--MGALLQHRVLCTARLSRKLYPQH----KGHGLDAIM 137
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILERITSDLN 123
+ G+ E HRAM DV +A+ LE +L
Sbjct: 138 QRHGLKTE-MRHRAMGDVELVAAYLEMARRELG 169
>gi|422629211|ref|ZP_16694416.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv. pisi
str. 1704B]
gi|424069466|ref|ZP_17806912.1| exonuclease [Pseudomonas syringae pv. avellanae str. ISPaVe013]
gi|424073900|ref|ZP_17811313.1| exonuclease [Pseudomonas syringae pv. avellanae str. ISPaVe037]
gi|330938176|gb|EGH41873.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv. pisi
str. 1704B]
gi|407994548|gb|EKG35119.1| exonuclease [Pseudomonas syringae pv. avellanae str. ISPaVe013]
gi|407995289|gb|EKG35823.1| exonuclease [Pseudomonas syringae pv. avellanae str. ISPaVe037]
Length = 203
Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 51/104 (49%), Gaps = 13/104 (12%)
Query: 28 GEIAIFV------AHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVS 81
G++A FV AHNA FD F E SR + F +L LAR LM G+ +
Sbjct: 75 GDVADFVGSTPLVAHNAS-FDQKFWDYELSRIERTREQS--FACSLLLARRLMP--GAPN 129
Query: 82 SKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITSDLNFT 125
K L L Y +P G AHRAM+D A++ +T++L T
Sbjct: 130 HK--LGTLTRYARLPDTGKAHRAMADAEMAANLTAYLTNELRQT 171
>gi|330816132|ref|YP_004359837.1| DNA polymerase III subunit epsilon [Burkholderia gladioli BSR3]
gi|327368525|gb|AEA59881.1| DNA polymerase III, epsilon subunit [Burkholderia gladioli BSR3]
Length = 203
Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 34 VAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREYF 93
VAHNA FD F E + +P F TL +AR + Q S L +L E
Sbjct: 87 VAHNAG-FDRRFWQSELGL--LGVPSAHEFACTLLVARRIYPQAPS----HRLSSLVEML 139
Query: 94 GIPLEGSAHRAMSDVNSLASILERITSDLNFT 125
+P G AHRAM D + + R+ SD+ T
Sbjct: 140 SLPKTGRAHRAMVDAEMASHLWCRLQSDMART 171
>gi|387815555|ref|YP_005431045.1| DNA polymerase III subunit epsilon [Marinobacter
hydrocarbonoclasticus ATCC 49840]
gi|381340575|emb|CCG96622.1| putative DNA polymerase III, epsilon subunit [Marinobacter
hydrocarbonoclasticus ATCC 49840]
Length = 509
Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
IFVAHNA RFD F+ EF R + R L T+ L+R L + + + ++ AL
Sbjct: 114 CIFVAHNA-RFDYGFIKSEFRRLGRLF--SARVLCTVRLSRALYPE----AERHNMDALI 166
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILE 116
G+P HRAM DV ++ + E
Sbjct: 167 ARHGLPAV-ERHRAMGDVTAMLAFFE 191
>gi|289675841|ref|ZP_06496731.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv.
syringae FF5]
Length = 204
Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 51/104 (49%), Gaps = 13/104 (12%)
Query: 28 GEIAIFV------AHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVS 81
G++A FV AHNA FD F E SR + F +L LAR LM G+ +
Sbjct: 76 GDVADFVGSTPLVAHNAS-FDQKFWDYELSRIERTREQS--FACSLLLARRLMP--GAPN 130
Query: 82 SKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITSDLNFT 125
K L L Y +P G AHRAM+D A++ +T++L T
Sbjct: 131 HK--LGTLTRYARLPDTGKAHRAMADAEMAANLTAYLTNELRQT 172
>gi|422666455|ref|ZP_16726324.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv.
aptata str. DSM 50252]
gi|440722315|ref|ZP_20902697.1| DNA polymerase III subunit epsilon [Pseudomonas syringae BRIP34876]
gi|440726028|ref|ZP_20906286.1| DNA polymerase III subunit epsilon [Pseudomonas syringae BRIP34881]
gi|330976913|gb|EGH76936.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv.
aptata str. DSM 50252]
gi|440361504|gb|ELP98731.1| DNA polymerase III subunit epsilon [Pseudomonas syringae BRIP34876]
gi|440367411|gb|ELQ04474.1| DNA polymerase III subunit epsilon [Pseudomonas syringae BRIP34881]
Length = 203
Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 51/104 (49%), Gaps = 13/104 (12%)
Query: 28 GEIAIFV------AHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVS 81
G++A FV AHNA FD F E SR + F +L LAR LM G+ +
Sbjct: 75 GDVADFVGSTPLVAHNAS-FDQKFWDYELSRIERTREQS--FACSLLLARRLMP--GAPN 129
Query: 82 SKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITSDLNFT 125
K L L Y +P G AHRAM+D A++ +T++L T
Sbjct: 130 HK--LGTLTRYARLPDTGKAHRAMADAEMAANLTAYLTNELRQT 171
>gi|424925050|ref|ZP_18348411.1| exonuclease, DNA polymerase III, epsilon subunit family
[Pseudomonas fluorescens R124]
gi|404306210|gb|EJZ60172.1| exonuclease, DNA polymerase III, epsilon subunit family
[Pseudomonas fluorescens R124]
Length = 201
Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 48/106 (45%), Gaps = 10/106 (9%)
Query: 17 VIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQ 76
V++ VN +G VAHNA FD F E R N F +L LAR LM
Sbjct: 73 VMEEVNEFVG---CTPLVAHNAS-FDQKFWDFELGRIKRTRLQN--FACSLLLARRLM-- 124
Query: 77 NGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITSDL 122
+ L L + +PL G AHRAM+D A+++ + +L
Sbjct: 125 --PAAPNHKLGTLTTFARLPLTGQAHRAMADAEMAANLMAHLAEEL 168
>gi|352104575|ref|ZP_08960431.1| excinuclease Cho [Halomonas sp. HAL1]
gi|350598798|gb|EHA14903.1| excinuclease Cho [Halomonas sp. HAL1]
Length = 462
Score = 40.4 bits (93), Expect = 0.22, Method: Composition-based stats.
Identities = 34/93 (36%), Positives = 50/93 (53%), Gaps = 13/93 (13%)
Query: 25 LGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKT 84
LG G++ VAHNAR FD FL EF R + + + TL L+R + Q +
Sbjct: 82 LGDGQL---VAHNAR-FDYSFLRNEFKRAGQDFRAS--LICTLRLSRRIAPQ----EQQH 131
Query: 85 SLQALREYFGI-PLEGSAHRAMSDVNSLASILE 116
+L+AL +GI P+ HRA DV++L S+ +
Sbjct: 132 NLKALLNRYGISPIR--HHRAGDDVDALWSLWQ 162
>gi|3080450|emb|CAA18767.1| hypothetical protein [Arabidopsis thaliana]
gi|7270965|emb|CAB80644.1| hypothetical protein [Arabidopsis thaliana]
Length = 236
Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 12/115 (10%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
P ED+ + +N R I+ HN RRFD + + F+ P+ +D+L
Sbjct: 79 PSFEDVAEKIHGLLNGR-------IWAGHNIRRFDCVRIKEAFAEIGKAAPEPSGIIDSL 131
Query: 68 PLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITSDL 122
L L + G + + +L YFG+ ++ HR++ DV +L+ + L
Sbjct: 132 GL---LSDKFGKRAGNMKMASLAAYFGLGVQ--KHRSLDDVRMNLEVLKHCATVL 181
>gi|319780604|ref|YP_004140080.1| DNA polymerase III subunit epsilon [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317166492|gb|ADV10030.1| DNA polymerase III, epsilon subunit [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 233
Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 40/85 (47%), Gaps = 7/85 (8%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
A VAHNA FDV FL EF R + DN +DTL LAR SL AL
Sbjct: 84 AKLVAHNAT-FDVGFLNVEFGRLGHPVIDNGVVVDTLALARRKHPM-----GPNSLDALC 137
Query: 91 EYFGIP-LEGSAHRAMSDVNSLASI 114
+GI + + H A+ D LA +
Sbjct: 138 RRYGIDNTKRTKHGALLDSELLAEV 162
>gi|418576156|ref|ZP_13140302.1| putative ATP-dependent DNA helicase [Staphylococcus saprophyticus
subsp. saprophyticus KACC 16562]
gi|379325218|gb|EHY92350.1| putative ATP-dependent DNA helicase [Staphylococcus saprophyticus
subsp. saprophyticus KACC 16562]
Length = 900
Score = 40.4 bits (93), Expect = 0.22, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
IFVAHN FD+ F+ K F +C +N + +DTL EL K L L E
Sbjct: 86 IFVAHNVA-FDLNFIKKSFKQCHINYRPK-KVMDTL----ELFKVAFPTDKSYQLSELAE 139
Query: 92 YFGIPLEGSAHRAMSDVNSLASIL 115
GI L +AHRA D + A ++
Sbjct: 140 VHGIILN-NAHRADEDAATTAQLM 162
>gi|345869453|ref|ZP_08821411.1| DNA polymerase III, epsilon subunit [Thiorhodococcus drewsii AZ1]
gi|343923376|gb|EGV34068.1| DNA polymerase III, epsilon subunit [Thiorhodococcus drewsii AZ1]
Length = 205
Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 7/90 (7%)
Query: 33 FVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREY 92
VAHNA FD F E SR + F+ TL LAR ++ + S L AL +
Sbjct: 81 LVAHNAA-FDSKFWDAELSRLGRQ--RSQSFVCTLLLARRVLPRAPSYK----LGALVDS 133
Query: 93 FGIPLEGSAHRAMSDVNSLASILERITSDL 122
FG+P AHRA++D + ++ R+ +L
Sbjct: 134 FGLPAAEPAHRALADAEMASHLMLRLEQEL 163
>gi|347541032|ref|YP_004848458.1| DNA polymerase III subunit epsilon [Pseudogulbenkiania sp. NH8B]
gi|345644211|dbj|BAK78044.1| DNA polymerase III, epsilon subunit [Pseudogulbenkiania sp. NH8B]
Length = 476
Score = 40.4 bits (93), Expect = 0.23, Method: Composition-based stats.
Identities = 37/115 (32%), Positives = 53/115 (46%), Gaps = 15/115 (13%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
P L+ +++ + RL +AHNAR FD FL EF R L T+
Sbjct: 69 PPFAALVETLLEKLQGRL-------LLAHNAR-FDYGFLKNEFKRAGHVFQS--EVLCTV 118
Query: 68 PLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITSDL 122
L+R L Q+ K SL +L GI L HRAM+D ++ +E T++L
Sbjct: 119 KLSRRLYPQH----FKHSLDSLIARHGIVL-ADRHRAMADALAVYHFIEAATAEL 168
>gi|422616036|ref|ZP_16684743.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv.
japonica str. M301072]
gi|330895532|gb|EGH27842.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv.
japonica str. M301072]
Length = 203
Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 51/104 (49%), Gaps = 13/104 (12%)
Query: 28 GEIAIFV------AHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVS 81
G++A FV AHNA FD F E SR + F +L LAR LM G+ +
Sbjct: 75 GDVADFVGSTPLVAHNAS-FDQKFWDYELSRIERTREQS--FACSLLLARRLMP--GAPN 129
Query: 82 SKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITSDLNFT 125
K L L Y +P G AHRAM+D A++ +T++L T
Sbjct: 130 HK--LGTLTRYARLPDTGKAHRAMADAEMAANLTAYLTNELRQT 171
>gi|254780818|ref|YP_003065231.1| DNA polymerase III subunit epsilon [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040495|gb|ACT57291.1| DNA polymerase III subunit epsilon [Candidatus Liberibacter
asiaticus str. psy62]
Length = 245
Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 10/98 (10%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
A ++AHNA+ FDV F+ E R + + D R +DTL +AR SS+ L +L
Sbjct: 92 AEWIAHNAK-FDVGFINAELQRINKDPLDPSRIIDTLSIARR-----KHPSSRNDLNSLC 145
Query: 91 EYFGIPLEG-SAHRAMSDVNSLASILERIT---SDLNF 124
+ +GI + S H A+ D + L+ + ++ S +NF
Sbjct: 146 KRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183
>gi|29374711|ref|NP_813863.1| DNA polymerase III subunit epsilon [Enterococcus faecalis V583]
gi|227555735|ref|ZP_03985782.1| DNA polymerase III, epsilon subunit [Enterococcus faecalis HH22]
gi|256761903|ref|ZP_05502483.1| conserved hypothetical protein [Enterococcus faecalis T3]
gi|422713135|ref|ZP_16769891.1| exonuclease, DNA polymerase III, epsilon subunit family protein
[Enterococcus faecalis TX0309A]
gi|422717758|ref|ZP_16774432.1| exonuclease, DNA polymerase III, epsilon subunit family protein
[Enterococcus faecalis TX0309B]
gi|29342169|gb|AAO79935.1| DNA polymerase III, epsilon subunit [Enterococcus faecalis V583]
gi|227175140|gb|EEI56112.1| DNA polymerase III, epsilon subunit [Enterococcus faecalis HH22]
gi|256683154|gb|EEU22849.1| conserved hypothetical protein [Enterococcus faecalis T3]
gi|315573941|gb|EFU86132.1| exonuclease, DNA polymerase III, epsilon subunit family protein
[Enterococcus faecalis TX0309B]
gi|315581892|gb|EFU94083.1| exonuclease, DNA polymerase III, epsilon subunit family protein
[Enterococcus faecalis TX0309A]
Length = 289
Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 17/101 (16%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
P +++++P + Y+ I V HN + FD PFL + NI + DT
Sbjct: 70 PTLDEVMPYLFDYLGD-------TILVGHNIKSFDFPFLKAK----GYNIAEGHEIYDTR 118
Query: 68 PLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDV 108
A +++G+V+++ L L+ FGI + +H A++DV
Sbjct: 119 YFAA--TRKHGAVNNQ--LTTLKLLFGI--DAISHNALNDV 153
>gi|418070705|ref|ZP_12707980.1| DNA polymerase III Rad3-related DNA helicase [Lactobacillus
rhamnosus R0011]
gi|423077964|ref|ZP_17066651.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus
rhamnosus ATCC 21052]
gi|357540125|gb|EHJ24142.1| DNA polymerase III Rad3-related DNA helicase [Lactobacillus
rhamnosus R0011]
gi|357552594|gb|EHJ34364.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus
rhamnosus ATCC 21052]
Length = 933
Score = 40.4 bits (93), Expect = 0.24, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 9/90 (10%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPD-NWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
+FVAHN FD PFL EF R + +P +DT+ LA+ L+ + GS L L
Sbjct: 88 VFVAHNVN-FDYPFLNAEFER--IGLPKLQLEAIDTVELAQVLLPEIGSF----RLSDLT 140
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILERITS 120
+F I + + H+A SD S A +L ++ +
Sbjct: 141 THFAIQHD-NPHQADSDATSTAKLLLQLKA 169
>gi|170035826|ref|XP_001845768.1| three prime repair exonuclease 1 [Culex quinquefasciatus]
gi|167878205|gb|EDS41588.1| three prime repair exonuclease 1 [Culex quinquefasciatus]
Length = 325
Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLAREL 73
VAHN RFD P L KE ++PD +D+LPL + L
Sbjct: 104 CLVAHNGNRFDFPILKKELEALKAHLPDATYCIDSLPLFQTL 145
>gi|224826335|ref|ZP_03699437.1| DNA polymerase III, epsilon subunit [Pseudogulbenkiania
ferrooxidans 2002]
gi|224601436|gb|EEG07617.1| DNA polymerase III, epsilon subunit [Pseudogulbenkiania
ferrooxidans 2002]
Length = 476
Score = 40.4 bits (93), Expect = 0.24, Method: Composition-based stats.
Identities = 37/115 (32%), Positives = 53/115 (46%), Gaps = 15/115 (13%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
P L+ +++ + RL +AHNAR FD FL EF R L T+
Sbjct: 69 PPFAALVETLLEKLQGRL-------LLAHNAR-FDYGFLKNEFKRAGHVFQS--EVLCTV 118
Query: 68 PLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITSDL 122
L+R L Q+ K SL +L GI L HRAM+D ++ +E T++L
Sbjct: 119 KLSRRLYPQH----FKHSLDSLIARHGIVL-ADRHRAMADALAVYHFIEAATAEL 168
>gi|381400299|ref|ZP_09925275.1| DNA polymerase III subunit [Kingella kingae PYKK081]
gi|380834686|gb|EIC14515.1| DNA polymerase III subunit [Kingella kingae PYKK081]
Length = 463
Score = 40.4 bits (93), Expect = 0.25, Method: Composition-based stats.
Identities = 36/117 (30%), Positives = 60/117 (51%), Gaps = 17/117 (14%)
Query: 1 MVNRSYVPRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDN 60
MV R+ P + ++P ++ + A+F+AHN+R FD F E R +
Sbjct: 85 MVRRA--PALAKILPDLLPLLRG-------ALFIAHNSR-FDYTFWRNECRRAGVAFAA- 133
Query: 61 WRFLDTLPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILER 117
L ++ L+R+L Q K SL ++ E G+ + S HRAM+DV++LA L++
Sbjct: 134 -LTLCSVQLSRKLYPQ----YHKHSLDSIIERNGLIVP-SRHRAMADVDALAQFLQQ 184
>gi|171742687|ref|ZP_02918494.1| hypothetical protein BIFDEN_01801 [Bifidobacterium dentium ATCC
27678]
gi|171278301|gb|EDT45962.1| BRCA1 C-terminal domain protein [Bifidobacterium dentium ATCC
27678]
Length = 328
Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 48/88 (54%), Gaps = 10/88 (11%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWR-FLDTLPLARELMKQNGSVSSKTSLQALR 90
+FVAHN FD FL E+ R +IP N L T+ L+R L+ GS++ R
Sbjct: 97 VFVAHNVA-FDSKFLLSEYRRLGTDIPVNSHTMLCTMKLSRSLIGV-GSLA-----DCCR 149
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILERI 118
E FGI E AH A+SD ++ A +L R+
Sbjct: 150 E-FGIDNE-DAHSALSDAHATALLLGRL 175
>gi|425738165|ref|ZP_18856432.1| ATP-dependent DNA helicase [Staphylococcus massiliensis S46]
gi|425480301|gb|EKU47468.1| ATP-dependent DNA helicase [Staphylococcus massiliensis S46]
Length = 900
Score = 40.4 bits (93), Expect = 0.25, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 43/84 (51%), Gaps = 7/84 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
IFVAHNA FD+ FL F C+M+ + ++ +DT+ EL K + L L
Sbjct: 86 IFVAHNAD-FDLKFLKASFEACNMSF-EPYKVIDTM----ELFKIAFPTAKSYQLGELAS 139
Query: 92 YFGIPLEGSAHRAMSDVNSLASIL 115
IPL+ AH+A D + A I+
Sbjct: 140 ALDIPLD-HAHQADEDAKTTALIM 162
>gi|229545209|ref|ZP_04433934.1| conserved hypothetical protein [Enterococcus faecalis TX1322]
gi|229309754|gb|EEN75741.1| conserved hypothetical protein [Enterococcus faecalis TX1322]
Length = 175
Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 48/108 (44%), Gaps = 14/108 (12%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
P ED+ + Y+ E IFVAHN FD FLA+E RC P +DT+
Sbjct: 76 PYFEDVAHTIYHYL-------EDTIFVAHNVH-FDYNFLARELVRCGTP-PLTIPAIDTV 126
Query: 68 PLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASIL 115
LA+ + S L L E G+ E + H+A SD A +L
Sbjct: 127 ELAQIFLPTEKSF----RLSDLSESLGLSHE-NPHQADSDAQVTAELL 169
>gi|339624795|ref|ZP_08660584.1| Rad3-related DNA helicase [Fructobacillus fructosus KCTC 3544]
Length = 805
Score = 40.4 bits (93), Expect = 0.25, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 9/85 (10%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPD-NWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
+FVAHN FD+P+L EF+R + +P+ + + +DT+ LA+ L + L L
Sbjct: 88 VFVAHNVN-FDLPYLNAEFAR--VGLPELDLQAIDTVQLAQILF----PTAPGYRLSDLT 140
Query: 91 EYFGIPLEGSAHRAMSDVNSLASIL 115
Y +PL AHRA +D + A ++
Sbjct: 141 TYLDLPLT-QAHRANADAEATAYLM 164
>gi|432097813|gb|ELK27849.1| Three prime repair exonuclease 2, partial [Myotis davidii]
Length = 574
Score = 40.4 bits (93), Expect = 0.26, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 10/118 (8%)
Query: 11 EDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLA 70
E ++ + +++ + GP VAHN +D P L E R ++P + LDTLP
Sbjct: 433 EAVVRTLQAFLSRQEGP---ICLVAHNGFDYDFPLLCTELQRLGAHLPRDTTCLDTLPAL 489
Query: 71 RELMKQNGSVSSKT-----SLQAL-REYFGIPLEGSAHRAMSDVNSLASILERITSDL 122
R L + + + SL +L R YF +AH A DV++L + ++L
Sbjct: 490 RGLDRAHSHGTRAQGCKGYSLGSLFRRYFQAE-PSAAHSAEGDVHTLLMVFLHRAAEL 546
>gi|83814553|ref|YP_445082.1| exonuclease [Salinibacter ruber DSM 13855]
gi|83755947|gb|ABC44060.1| exonuclease, putative [Salinibacter ruber DSM 13855]
Length = 249
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 56/121 (46%), Gaps = 14/121 (11%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNI--PDNWRFLDTLPLARELMKQNGSVSSKTSLQA 88
A +NA +D+P L EF R + PD+ LD L + L + +L A
Sbjct: 91 ADLAGYNALAYDIPLLQAEFERHGRTLPGPDDRVVLDPYRLEQVLRPR--------TLSA 142
Query: 89 LRE-YFGIPLEGSAHRAMSDVNSLASILER--ITSDLNFTLSDLLKTSFRANFDHSKKNK 145
L E Y G L+ AH A+SDV + +L+R D++ T +DL + D ++ K
Sbjct: 143 LYERYTGDALD-DAHDALSDVEAAGRVLQRQLADHDIDGTPADLAQQIRGDYLDDQRRLK 201
Query: 146 K 146
+
Sbjct: 202 Q 202
>gi|410094146|ref|ZP_11290599.1| DNA polymerase III subunit epsilon [Pseudomonas viridiflava
UASWS0038]
gi|409758456|gb|EKN43755.1| DNA polymerase III subunit epsilon [Pseudomonas viridiflava
UASWS0038]
Length = 203
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 46/90 (51%), Gaps = 7/90 (7%)
Query: 33 FVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREY 92
VAHNA FD F E SR + F ++ LAR LM G+ + K L L +Y
Sbjct: 86 LVAHNAS-FDQKFWDYELSRIERTREQS--FACSMLLARRLMP--GAPNHK--LGTLTQY 138
Query: 93 FGIPLEGSAHRAMSDVNSLASILERITSDL 122
+P G AHRAM+D A++ +T++L
Sbjct: 139 ARLPNTGKAHRAMADAEMAANLTAYLTNEL 168
>gi|330995701|ref|ZP_08319599.1| exonuclease [Paraprevotella xylaniphila YIT 11841]
gi|329574760|gb|EGG56321.1| exonuclease [Paraprevotella xylaniphila YIT 11841]
Length = 256
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 55/115 (47%), Gaps = 18/115 (15%)
Query: 33 FVAHNARRFDVPFLAKEFSRCSMNIPDNWR-FLDTLPLARELMKQNGSVSSKTSLQALRE 91
F N+ RFDVP L +EF R ++I R F+D + +L + +T A +
Sbjct: 90 FAGFNSNRFDVPMLVEEFLRAGIDIDIRKRKFIDVQNIYHKLER-------RTLSAAYKF 142
Query: 92 YFGIPLEGSAHRAMSDVNSLASIL--------ERITSDLNFTLSDLLKTSFRANF 138
Y G LE +AH A++D + +L E + +D+ F LSD K + +F
Sbjct: 143 YCGKDLE-NAHSALADTRATYEVLMAQLDHYPEDLKNDVAF-LSDFSKMTDNVDF 195
>gi|283456242|ref|YP_003360806.1| dnaQ DNA polymerase III alpha subunit [Bifidobacterium dentium Bd1]
gi|283102876|gb|ADB09982.1| dnaQ DNA polymerase III alpha subunit [Bifidobacterium dentium Bd1]
Length = 317
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 48/88 (54%), Gaps = 10/88 (11%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWR-FLDTLPLARELMKQNGSVSSKTSLQALR 90
+FVAHN FD FL E+ R +IP N L T+ L+R L+ GS++ R
Sbjct: 86 VFVAHNVA-FDSKFLLSEYRRLGTDIPVNSHTMLCTMKLSRSLIGV-GSLA-----DCCR 138
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILERI 118
E FGI E AH A+SD ++ A +L R+
Sbjct: 139 E-FGIDNE-DAHSALSDAHATALLLGRL 164
>gi|334337307|ref|YP_004542459.1| DNA polymerase III subunit epsilon [Isoptericola variabilis 225]
gi|334107675|gb|AEG44565.1| DNA polymerase III, epsilon subunit [Isoptericola variabilis 225]
Length = 578
Score = 40.4 bits (93), Expect = 0.26, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 11/93 (11%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSK-TSLQAL 89
++ VAHNA +DV FL R P +R +DT+PLAR ++ ++ + + K ++L AL
Sbjct: 104 SVLVAHNAP-YDVGFLRAACERLGYPWP-GFRVVDTVPLARRVVTRDEAPNHKLSTLAAL 161
Query: 90 REYFGIPLEGSAHRAMSD----VNSLASILERI 118
P HRA++D V+ L +LER+
Sbjct: 162 FRARTTP----QHRALADARATVDVLHGLLERL 190
>gi|306822551|ref|ZP_07455929.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679]
gi|309801474|ref|ZP_07695601.1| BRCA1 C-terminal domain protein [Bifidobacterium dentium
JCVIHMP022]
gi|304554096|gb|EFM42005.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679]
gi|308221989|gb|EFO78274.1| BRCA1 C-terminal domain protein [Bifidobacterium dentium
JCVIHMP022]
Length = 328
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 48/88 (54%), Gaps = 10/88 (11%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWR-FLDTLPLARELMKQNGSVSSKTSLQALR 90
+FVAHN FD FL E+ R +IP N L T+ L+R L+ GS++ R
Sbjct: 97 VFVAHNVA-FDSKFLLSEYRRLGADIPVNSHTMLCTMKLSRSLIGV-GSLA-----DCCR 149
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILERI 118
E FGI E AH A+SD ++ A +L R+
Sbjct: 150 E-FGIDNE-DAHSALSDAHATALLLGRL 175
>gi|225076263|ref|ZP_03719462.1| hypothetical protein NEIFLAOT_01303 [Neisseria flavescens
NRL30031/H210]
gi|224952387|gb|EEG33596.1| hypothetical protein NEIFLAOT_01303 [Neisseria flavescens
NRL30031/H210]
Length = 463
Score = 40.4 bits (93), Expect = 0.26, Method: Composition-based stats.
Identities = 35/95 (36%), Positives = 49/95 (51%), Gaps = 12/95 (12%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNI--PDNWRFLDTLPLARELMKQNGSVSSKTSLQA 88
A+ VAHN+R FD FL EF+R + P L T+ L+R L + K SL +
Sbjct: 99 AVVVAHNSR-FDYTFLRHEFARIHTDFAAPS----LCTVQLSRRLYPE----FYKHSLDS 149
Query: 89 LREYFGIPLEGSAHRAMSDVNSLASILERITSDLN 123
+ E GI + HRAM+DV +L LE ++ N
Sbjct: 150 IIERTGIQ-TANRHRAMTDVAALCDYLELSLAEKN 183
>gi|431792843|ref|YP_007219748.1| DNA polymerase III subunit alpha [Desulfitobacterium
dichloroeliminans LMG P-21439]
gi|430783069|gb|AGA68352.1| DNA polymerase III, alpha chain [Desulfitobacterium
dichloroeliminans LMG P-21439]
Length = 1463
Score = 40.4 bits (93), Expect = 0.27, Method: Composition-based stats.
Identities = 33/105 (31%), Positives = 53/105 (50%), Gaps = 12/105 (11%)
Query: 29 EIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQA 88
E ++ VAHNA FD+ FL + N+ +LDTL LA+EL + + L
Sbjct: 517 EDSVLVAHNAD-FDMGFLKHNAKLLGYDF--NYTYLDTLALAKELFPEYKTY----KLGR 569
Query: 89 LREYFGIPLEGSAHRAMSDVNSLASI----LERITSDLNFTLSDL 129
+ + GI +E AHRA+ DV++ + L+++ TL D+
Sbjct: 570 IAKNLGINVE-VAHRALDDVDTTVKVFNIMLDKLKERGAVTLEDI 613
>gi|386079022|ref|YP_005992547.1| DNA polymerase III subunit epsilon [Pantoea ananatis PA13]
gi|354988203|gb|AER32327.1| DNA polymerase III subunit epsilon [Pantoea ananatis PA13]
Length = 222
Score = 40.4 bits (93), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 57/119 (47%), Gaps = 19/119 (15%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
++VAHNA FD P L + I W + TL LAR+L + S S+ Q LR
Sbjct: 79 VYVAHNAA-FDRPKLPQ--------ITAPW--ICTLKLARKLYPELESHSN----QYLRY 123
Query: 92 YF----GIPLEGSAHRAMSDVNSLASILERITSDLNFTLSDLLKTSFRANFDHSKKNKK 146
+F +P AHRA+ D A++L R+ D T++ + S R + H+ + K
Sbjct: 124 HFMLDVDVPENLHAHRALYDCYVTAALLLRLNRDARLTIAQMRDISARPSLLHTMRFGK 182
>gi|281347637|gb|EFB23221.1| hypothetical protein PANDA_019230 [Ailuropoda melanoleuca]
Length = 248
Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 7/86 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQA--- 88
VAHN +D P L E R ++P + LDTLP R L + + + +
Sbjct: 125 CLVAHNGFDYDFPLLCTELRRLGAHLPPDTICLDTLPALRSLDRAHSHGTRAQGCKGYSL 184
Query: 89 ---LREYFGIPLEGSAHRAMSDVNSL 111
R YF +AH A DV++L
Sbjct: 185 GSLFRRYFQAE-PSAAHSAEGDVHTL 209
>gi|73662598|ref|YP_301379.1| ATP-dependent DNA helicase [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
gi|123642618|sp|Q49XR1.1|DING_STAS1 RecName: Full=Probable ATP-dependent helicase DinG homolog
gi|72495113|dbj|BAE18434.1| putative ATP-dependent DNA helicase [Staphylococcus saprophyticus
subsp. saprophyticus ATCC 15305]
Length = 900
Score = 40.0 bits (92), Expect = 0.28, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
IFVAHN FD+ F+ K F +C +N + +DTL EL K L L E
Sbjct: 86 IFVAHNVA-FDLNFIKKSFKQCHINYRPK-KVMDTL----ELFKVAFPTDKSYQLSELAE 139
Query: 92 YFGIPLEGSAHRAMSDVNSLASIL 115
GI L +AHRA D + A ++
Sbjct: 140 AHGIILN-NAHRADEDAATTAQLM 162
>gi|345488834|ref|XP_001599410.2| PREDICTED: hypothetical protein LOC100114369 [Nasonia vitripennis]
Length = 374
Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 6 YVPRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLD 65
+ P +D +++ ++N RL PG I FVAHN RFD P E + M PD +D
Sbjct: 116 FKPFDKDTYNMIMLFIN-RL-PGVIC-FVAHNGNRFDYPVFLSEIDKLQMTFPDRILCVD 172
Query: 66 TLPLAREL 73
TL +E
Sbjct: 173 TLIAFKEF 180
>gi|357130185|ref|XP_003566731.1| PREDICTED: uncharacterized protein LOC100832440 [Brachypodium
distachyon]
Length = 265
Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 7/104 (6%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
++ HN RRFDVP L F+ + P+ +D+L L L + G + + L
Sbjct: 99 VWAGHNIRRFDVPRLRAAFAAAGLPPPEPAAVVDSLDL---LASEFGRRAGDLKMATLAA 155
Query: 92 YFGIPLEGSAHRAMSDVNSLASILERITSD--LNFTLSDLLKTS 133
YFGI + HR + D +++ + L TL LL +
Sbjct: 156 YFGIGKQ--RHRGLDDARMNLEVIKHCAAVLLLESTLPGLLAAA 197
>gi|410989671|ref|XP_004001082.1| PREDICTED: three prime repair exonuclease 2 [Felis catus]
Length = 255
Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 10/98 (10%)
Query: 20 YVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGS 79
+++ + GP VAHN +D P L E R ++P + LDTLP R L + +
Sbjct: 123 FLSRQEGP---VCLVAHNGFDYDFPLLCTELRRLGAHLPPDTICLDTLPALRGLDRAHSH 179
Query: 80 VSSKTSLQA------LREYFGIPLEGSAHRAMSDVNSL 111
+ + R YF +AH A DV++L
Sbjct: 180 GTRAQGFKGYSLGSLFRRYFHAE-PSAAHSAEGDVHTL 216
>gi|424843639|ref|ZP_18268264.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
[Saprospira grandis DSM 2844]
gi|395321837|gb|EJF54758.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
[Saprospira grandis DSM 2844]
Length = 267
Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 9/87 (10%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIP-DNWRFLDTLPLARELMKQNGSVSSKTSLQAL 89
A +N+ RFD+P L +EFSR + R +D + + ++ +T AL
Sbjct: 89 ADLAGYNSNRFDLPVLMEEFSRAGFEFSIEGRRLIDAMQIFYKM-------EPRTLKAAL 141
Query: 90 REYFGIPLEGSAHRAMSDVNSLASILE 116
R Y G LE +AH A++D + A +L+
Sbjct: 142 RFYCGQNLE-NAHDALADTRATAEVLK 167
>gi|422869808|ref|ZP_16916313.1| exonuclease, DNA polymerase III, epsilon subunit family
[Enterococcus faecalis TX1467]
gi|329569951|gb|EGG51706.1| exonuclease, DNA polymerase III, epsilon subunit family
[Enterococcus faecalis TX1467]
Length = 240
Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 48/108 (44%), Gaps = 14/108 (12%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
P ED+ + Y+ E IFVAHN FD FLA+E RC P +DT+
Sbjct: 76 PYFEDVAHTIYHYL-------EDTIFVAHNVH-FDYNFLARELVRCGTP-PLTIPAIDTV 126
Query: 68 PLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASIL 115
LA+ + S L L E G+ E + H+A SD A +L
Sbjct: 127 ELAQIFLPTEKSF----RLSDLSESLGLSHE-NPHQADSDAQVTAELL 169
>gi|329903276|ref|ZP_08273408.1| DNA polymerase III alpha subunit [Oxalobacteraceae bacterium
IMCC9480]
gi|327548440|gb|EGF33116.1| DNA polymerase III alpha subunit [Oxalobacteraceae bacterium
IMCC9480]
Length = 216
Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 61/123 (49%), Gaps = 15/123 (12%)
Query: 1 MVNRSYVPRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDN 60
MV+R+ P +E ++P +++++ S AHN FD FL E +R + +P +
Sbjct: 58 MVDRA--PPVEQVMPELVRFIGSDA-------LAAHNVS-FDEKFLLAESARLGI-VPAH 106
Query: 61 WRFLDTLPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITS 120
+ ++ L+R + S + L AL GI +G+AHRA +D ++++ I +
Sbjct: 107 AGVICSVKLSRRVFPGLRSYA----LGALANSLGIRFKGTAHRAEADAEVASALMLHIAA 162
Query: 121 DLN 123
L
Sbjct: 163 HLG 165
>gi|301787433|ref|XP_002929126.1| PREDICTED: three prime repair exonuclease 2-like [Ailuropoda
melanoleuca]
Length = 236
Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 7/86 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQA--- 88
VAHN +D P L E R ++P + LDTLP R L + + + +
Sbjct: 113 CLVAHNGFDYDFPLLCTELRRLGAHLPPDTICLDTLPALRSLDRAHSHGTRAQGCKGYSL 172
Query: 89 ---LREYFGIPLEGSAHRAMSDVNSL 111
R YF +AH A DV++L
Sbjct: 173 GSLFRRYFQAE-PSAAHSAEGDVHTL 197
>gi|294506958|ref|YP_003571016.1| DNA polymerase III polC-type [Salinibacter ruber M8]
gi|294343286|emb|CBH24064.1| DNA polymerase III polC-type [Salinibacter ruber M8]
Length = 258
Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 56/121 (46%), Gaps = 14/121 (11%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNI--PDNWRFLDTLPLARELMKQNGSVSSKTSLQA 88
A +NA +D+P L EF R + PD+ LD L + L + +L A
Sbjct: 100 ADLAGYNALAYDIPLLQAEFERHGRTLPGPDDRVVLDPYRLEQVLRPR--------TLSA 151
Query: 89 LRE-YFGIPLEGSAHRAMSDVNSLASILER--ITSDLNFTLSDLLKTSFRANFDHSKKNK 145
L E Y G L+ AH A+SDV + +L+R D++ T +DL + D ++ K
Sbjct: 152 LYERYTGDALD-DAHDALSDVEAAGRVLQRQLADHDIDGTPADLAQQIRGDYLDDQRRLK 210
Query: 146 K 146
+
Sbjct: 211 Q 211
>gi|257090540|ref|ZP_05584901.1| DNA polymerase III epsilon subunit [Enterococcus faecalis CH188]
gi|422688267|ref|ZP_16746425.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0630]
gi|256999352|gb|EEU85872.1| DNA polymerase III epsilon subunit [Enterococcus faecalis CH188]
gi|315578691|gb|EFU90882.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0630]
Length = 929
Score = 40.0 bits (92), Expect = 0.29, Method: Composition-based stats.
Identities = 37/111 (33%), Positives = 50/111 (45%), Gaps = 20/111 (18%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCS---MNIPDNWRFL 64
P ED+ + Y+ E IFVAHN FD FLA+E RC + IP +
Sbjct: 76 PYFEDVAHTIYHYL-------EDTIFVAHNVH-FDYDFLARELVRCGTPPLTIPA----I 123
Query: 65 DTLPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASIL 115
DT+ LA+ + S L L E G+ E + H+A SD A +L
Sbjct: 124 DTVELAQIFLPTEKSF----RLSDLSESLGLSHE-NPHQADSDAQVTAELL 169
>gi|319787627|ref|YP_004147102.1| DNA polymerase III subunit epsilon [Pseudoxanthomonas suwonensis
11-1]
gi|317466139|gb|ADV27871.1| DNA polymerase III, epsilon subunit [Pseudoxanthomonas suwonensis
11-1]
Length = 247
Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 53/117 (45%), Gaps = 17/117 (14%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMN---IPDNWRFL 64
P E+++ ++Y++ A + HNA FD+ FL E SRC + I D +
Sbjct: 68 PAFEEIVDEFLEYIDG-------AELIIHNAA-FDLGFLDYELSRCGAHLGRIVDRCSVV 119
Query: 65 DTLPLARELMKQNGSVSSKTSLQALREYFGIP-LEGSAHRAMSDVNSLASILERITS 120
DTL LARE + SL AL + G+ H A+ D LA + +TS
Sbjct: 120 DTLLLARERYP-----GQRNSLDALCKRLGVDNSHRQLHGALLDAQILADVYIALTS 171
>gi|170052948|ref|XP_001862453.1| three prime repair exonuclease 1 [Culex quinquefasciatus]
gi|167873675|gb|EDS37058.1| three prime repair exonuclease 1 [Culex quinquefasciatus]
Length = 246
Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLAREL 73
VAHN RFD P L KE ++PD +D+LPL + L
Sbjct: 25 CLVAHNGNRFDFPILKKELEALKAHLPDATYCIDSLPLFQTL 66
>gi|29376872|ref|NP_816026.1| DNA polymerase III, subunit epsilon/ATP-dependent helicase DinG
[Enterococcus faecalis V583]
gi|227519901|ref|ZP_03949950.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
faecalis TX0104]
gi|422714924|ref|ZP_16771648.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0309A]
gi|422717399|ref|ZP_16774084.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0309B]
gi|424676258|ref|ZP_18113135.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV103]
gi|424680566|ref|ZP_18117369.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV116]
gi|424683143|ref|ZP_18119897.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV129]
gi|424689584|ref|ZP_18126155.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV31]
gi|424694056|ref|ZP_18130465.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV37]
gi|424697635|ref|ZP_18133957.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV41]
gi|424700132|ref|ZP_18136330.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV62]
gi|424703027|ref|ZP_18139164.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV63]
gi|424710147|ref|ZP_18143613.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV65]
gi|424717894|ref|ZP_18147168.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV68]
gi|424721118|ref|ZP_18150216.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV72]
gi|424725024|ref|ZP_18153951.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV73]
gi|424727261|ref|ZP_18155894.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV81]
gi|424742049|ref|ZP_18170383.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV85]
gi|424751181|ref|ZP_18179213.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV93]
gi|29344337|gb|AAO82096.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
[Enterococcus faecalis V583]
gi|227072695|gb|EEI10658.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
faecalis TX0104]
gi|315574388|gb|EFU86579.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0309B]
gi|315580138|gb|EFU92329.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0309A]
gi|402353864|gb|EJU88686.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV116]
gi|402357517|gb|EJU92224.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV103]
gi|402365909|gb|EJV00323.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV129]
gi|402367669|gb|EJV02008.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV31]
gi|402371838|gb|EJV05982.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV37]
gi|402374508|gb|EJV08524.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV62]
gi|402375166|gb|EJV09158.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV41]
gi|402383634|gb|EJV17229.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV68]
gi|402383859|gb|EJV17438.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV65]
gi|402385682|gb|EJV19214.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV63]
gi|402392314|gb|EJV25578.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV72]
gi|402392534|gb|EJV25792.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV73]
gi|402397251|gb|EJV30279.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV81]
gi|402401037|gb|EJV33837.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV85]
gi|402405735|gb|EJV38319.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV93]
Length = 929
Score = 40.0 bits (92), Expect = 0.33, Method: Composition-based stats.
Identities = 37/111 (33%), Positives = 50/111 (45%), Gaps = 20/111 (18%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCS---MNIPDNWRFL 64
P ED+ + Y+ E IFVAHN FD FLA+E RC + IP +
Sbjct: 76 PYFEDVAHTIYHYL-------EDTIFVAHNVH-FDYNFLARELVRCGTPPLTIPA----I 123
Query: 65 DTLPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASIL 115
DT+ LA+ + S L L E G+ E + H+A SD A +L
Sbjct: 124 DTVELAQIFLPTEKSF----RLSDLSESLGLSHE-NPHQADSDAQVTAELL 169
>gi|424686651|ref|ZP_18123317.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV25]
gi|402367046|gb|EJV01397.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
ERV25]
Length = 929
Score = 40.0 bits (92), Expect = 0.33, Method: Composition-based stats.
Identities = 37/111 (33%), Positives = 50/111 (45%), Gaps = 20/111 (18%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCS---MNIPDNWRFL 64
P ED+ + Y+ E IFVAHN FD FLA+E RC + IP +
Sbjct: 76 PYFEDVAHTIYHYL-------EDTIFVAHNVH-FDYNFLARELVRCGTPPLTIPA----I 123
Query: 65 DTLPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASIL 115
DT+ LA+ + S L L E G+ E + H+A SD A +L
Sbjct: 124 DTVELAQIFLPTEKSF----RLSDLSESLGLSHE-NPHQADSDAQVTAELL 169
>gi|94496604|ref|ZP_01303180.1| DNA polymerase III, epsilon subunit [Sphingomonas sp. SKA58]
gi|94423964|gb|EAT08989.1| DNA polymerase III, epsilon subunit [Sphingomonas sp. SKA58]
Length = 230
Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 42/96 (43%), Gaps = 7/96 (7%)
Query: 33 FVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREY 92
VAHNAR FD FL E + C R +DT+ +AR+L +K SL AL
Sbjct: 86 LVAHNAR-FDFGFLNHELTLCGHPQVGMHRMIDTVAIARQLHP-----GAKHSLDALCTR 139
Query: 93 FGIPLEGSA-HRAMSDVNSLASILERITSDLNFTLS 127
+GI H A+ D LA + +T L
Sbjct: 140 YGIDRSHRVKHGALLDAELLAQLYIELTGGRQIGLG 175
>gi|227553912|ref|ZP_03983959.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
faecalis HH22]
gi|227176898|gb|EEI57870.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
faecalis HH22]
Length = 929
Score = 40.0 bits (92), Expect = 0.34, Method: Composition-based stats.
Identities = 37/111 (33%), Positives = 50/111 (45%), Gaps = 20/111 (18%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCS---MNIPDNWRFL 64
P ED+ + Y+ E IFVAHN FD FLA+E RC + IP +
Sbjct: 76 PYFEDVAHTIYHYL-------EDTIFVAHNVH-FDYNFLARELVRCGTPPLTIPA----I 123
Query: 65 DTLPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASIL 115
DT+ LA+ + S L L E G+ E + H+A SD A +L
Sbjct: 124 DTVELAQIFLPTEKSF----RLSDLSESLGLSHE-NPHQADSDAQVTAELL 169
>gi|255972155|ref|ZP_05422741.1| DNA polymerase III [Enterococcus faecalis T1]
gi|255963173|gb|EET95649.1| DNA polymerase III [Enterococcus faecalis T1]
Length = 929
Score = 40.0 bits (92), Expect = 0.34, Method: Composition-based stats.
Identities = 37/111 (33%), Positives = 50/111 (45%), Gaps = 20/111 (18%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCS---MNIPDNWRFL 64
P ED+ + Y+ E IFVAHN FD FLA+E RC + IP +
Sbjct: 76 PYFEDVAHTIYHYL-------EDTIFVAHNVH-FDYNFLARELVRCGTPPLTIPA----I 123
Query: 65 DTLPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASIL 115
DT+ LA+ + S L L E G+ E + H+A SD A +L
Sbjct: 124 DTVELAQIFLPTEKSF----RLSDLSESLGLSHE-NPHQADSDAQVTAELL 169
>gi|422697807|ref|ZP_16755738.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX1346]
gi|315173642|gb|EFU17659.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX1346]
Length = 929
Score = 40.0 bits (92), Expect = 0.34, Method: Composition-based stats.
Identities = 37/111 (33%), Positives = 50/111 (45%), Gaps = 20/111 (18%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCS---MNIPDNWRFL 64
P ED+ + Y+ E IFVAHN FD FLA+E RC + IP +
Sbjct: 76 PYFEDVAHTIYHYL-------EDTIFVAHNVH-FDYNFLARELVRCGTPPLTIPA----I 123
Query: 65 DTLPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASIL 115
DT+ LA+ + S L L E G+ E + H+A SD A +L
Sbjct: 124 DTVELAQIFLPTEKSF----RLSDLSESLGLSHE-NPHQADSDAQVTAELL 169
>gi|257082037|ref|ZP_05576398.1| DNA polymerase III [Enterococcus faecalis E1Sol]
gi|256990067|gb|EEU77369.1| DNA polymerase III [Enterococcus faecalis E1Sol]
Length = 929
Score = 40.0 bits (92), Expect = 0.34, Method: Composition-based stats.
Identities = 37/111 (33%), Positives = 50/111 (45%), Gaps = 20/111 (18%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCS---MNIPDNWRFL 64
P ED+ + Y+ E IFVAHN FD FLA+E RC + IP +
Sbjct: 76 PYFEDVAHTIYHYL-------EDTIFVAHNVH-FDYNFLARELVRCGTPPLTIPA----I 123
Query: 65 DTLPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASIL 115
DT+ LA+ + S L L E G+ E + H+A SD A +L
Sbjct: 124 DTVELAQIFLPTEKSF----RLSDLSESLGLSHE-NPHQADSDAQVTAELL 169
>gi|430370051|ref|ZP_19428850.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
faecalis M7]
gi|429515600|gb|ELA05111.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
faecalis M7]
Length = 923
Score = 40.0 bits (92), Expect = 0.35, Method: Composition-based stats.
Identities = 37/111 (33%), Positives = 50/111 (45%), Gaps = 20/111 (18%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCS---MNIPDNWRFL 64
P ED+ + Y+ E IFVAHN FD FLA+E RC + IP +
Sbjct: 70 PYFEDVAHTIYHYL-------EDTIFVAHNVH-FDYNFLARELVRCGTPPLTIPA----I 117
Query: 65 DTLPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASIL 115
DT+ LA+ + S L L E G+ E + H+A SD A +L
Sbjct: 118 DTVELAQIFLPTEKSF----RLSDLSESLGLSHE-NPHQADSDAQVTAELL 163
>gi|424760609|ref|ZP_18188221.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
R508]
gi|402403302|gb|EJV35981.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
R508]
Length = 929
Score = 40.0 bits (92), Expect = 0.35, Method: Composition-based stats.
Identities = 37/111 (33%), Positives = 50/111 (45%), Gaps = 20/111 (18%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCS---MNIPDNWRFL 64
P ED+ + Y+ E IFVAHN FD FLA+E RC + IP +
Sbjct: 76 PYFEDVAHTIYHYL-------EDTIFVAHNVH-FDYNFLARELVRCGTPPLTIPA----I 123
Query: 65 DTLPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASIL 115
DT+ LA+ + S L L E G+ E + H+A SD A +L
Sbjct: 124 DTVELAQIFLPTEKSF----RLSDLSESLGLSHE-NPHQADSDAQVTAELL 169
>gi|384519199|ref|YP_005706504.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
62]
gi|323481332|gb|ADX80771.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
62]
Length = 929
Score = 40.0 bits (92), Expect = 0.35, Method: Composition-based stats.
Identities = 37/111 (33%), Positives = 50/111 (45%), Gaps = 20/111 (18%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCS---MNIPDNWRFL 64
P ED+ + Y+ E IFVAHN FD FLA+E RC + IP +
Sbjct: 76 PYFEDVAHTIYHYL-------EDTIFVAHNVH-FDYNFLARELVRCGTPPLTIPA----I 123
Query: 65 DTLPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASIL 115
DT+ LA+ + S L L E G+ E + H+A SD A +L
Sbjct: 124 DTVELAQIFLPTEKSF----RLSDLSESLGLSHE-NPHQADSDAQVTAELL 169
>gi|323450230|gb|EGB06112.1| hypothetical protein AURANDRAFT_65802 [Aureococcus anophagefferens]
Length = 1190
Score = 40.0 bits (92), Expect = 0.35, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIP-DNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
+ AHN RFD P L + ++ + + + DTLPLARE S T +
Sbjct: 129 VLAAHNGDRFDHPILRRLVAKHAAEADLASALWFDTLPLAREAFPDRRGPGSHTLGRLFS 188
Query: 91 EYFGIPLEGSAHRAMSDVNSLASI 114
+ G PL G AH A++D ++A +
Sbjct: 189 DATGGPL-GGAHDALADARAVAEV 211
>gi|422729573|ref|ZP_16785974.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0012]
gi|315150174|gb|EFT94190.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0012]
Length = 929
Score = 40.0 bits (92), Expect = 0.35, Method: Composition-based stats.
Identities = 37/111 (33%), Positives = 50/111 (45%), Gaps = 20/111 (18%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCS---MNIPDNWRFL 64
P ED+ + Y+ E IFVAHN FD FLA+E RC + IP +
Sbjct: 76 PYFEDVAHTIYHYL-------EDTIFVAHNVH-FDYNFLARELVRCGTPPLTIPA----I 123
Query: 65 DTLPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASIL 115
DT+ LA+ + S L L E G+ E + H+A SD A +L
Sbjct: 124 DTVELAQIFLPTEKSF----RLSDLSESLGLSHE-NPHQADSDAQVTAELL 169
>gi|422695886|ref|ZP_16753864.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX4244]
gi|315146656|gb|EFT90672.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX4244]
Length = 929
Score = 40.0 bits (92), Expect = 0.35, Method: Composition-based stats.
Identities = 37/111 (33%), Positives = 50/111 (45%), Gaps = 20/111 (18%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCS---MNIPDNWRFL 64
P ED+ + Y+ E IFVAHN FD FLA+E RC + IP +
Sbjct: 76 PYFEDVAHTIYHYL-------EDTIFVAHNVH-FDYNFLARELVRCGTPPLTIPA----I 123
Query: 65 DTLPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASIL 115
DT+ LA+ + S L L E G+ E + H+A SD A +L
Sbjct: 124 DTVELAQIFLPTEKSF----RLSDLSESLGLSHE-NPHQADSDAQVTAELL 169
>gi|422709920|ref|ZP_16767266.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0027]
gi|315035644|gb|EFT47576.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0027]
Length = 929
Score = 40.0 bits (92), Expect = 0.35, Method: Composition-based stats.
Identities = 37/111 (33%), Positives = 50/111 (45%), Gaps = 20/111 (18%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCS---MNIPDNWRFL 64
P ED+ + Y+ E IFVAHN FD FLA+E RC + IP +
Sbjct: 76 PYFEDVAHTIYHYL-------EDTIFVAHNVH-FDYNFLARELVRCGTPPLTIPA----I 123
Query: 65 DTLPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASIL 115
DT+ LA+ + S L L E G+ E + H+A SD A +L
Sbjct: 124 DTVELAQIFLPTEKSF----RLSDLSESLGLSHE-NPHQADSDAQVTAELL 169
>gi|422719831|ref|ZP_16776454.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0017]
gi|315032870|gb|EFT44802.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0017]
Length = 929
Score = 40.0 bits (92), Expect = 0.35, Method: Composition-based stats.
Identities = 37/111 (33%), Positives = 50/111 (45%), Gaps = 20/111 (18%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCS---MNIPDNWRFL 64
P ED+ + Y+ E IFVAHN FD FLA+E RC + IP +
Sbjct: 76 PYFEDVAHTIYHYL-------EDTIFVAHNVH-FDYNFLARELVRCGTPPLTIPA----I 123
Query: 65 DTLPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASIL 115
DT+ LA+ + S L L E G+ E + H+A SD A +L
Sbjct: 124 DTVELAQIFLPTEKSF----RLSDLSESLGLSHE-NPHQADSDAQVTAELL 169
>gi|312899802|ref|ZP_07759121.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0470]
gi|422736936|ref|ZP_16793193.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX2141]
gi|428767587|ref|YP_007153698.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
[Enterococcus faecalis str. Symbioflor 1]
gi|311293052|gb|EFQ71608.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0470]
gi|315146017|gb|EFT90033.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX2141]
gi|427185760|emb|CCO72984.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
[Enterococcus faecalis str. Symbioflor 1]
Length = 929
Score = 40.0 bits (92), Expect = 0.35, Method: Composition-based stats.
Identities = 37/111 (33%), Positives = 50/111 (45%), Gaps = 20/111 (18%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCS---MNIPDNWRFL 64
P ED+ + Y+ E IFVAHN FD FLA+E RC + IP +
Sbjct: 76 PYFEDVAHTIYHYL-------EDTIFVAHNVH-FDYNFLARELVRCGTPPLTIPA----I 123
Query: 65 DTLPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASIL 115
DT+ LA+ + S L L E G+ E + H+A SD A +L
Sbjct: 124 DTVELAQIFLPTEKSF----RLSDLSESLGLSHE-NPHQADSDAQVTAELL 169
>gi|307287736|ref|ZP_07567779.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0109]
gi|422703714|ref|ZP_16761534.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX1302]
gi|306501474|gb|EFM70777.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0109]
gi|315164835|gb|EFU08852.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX1302]
Length = 929
Score = 40.0 bits (92), Expect = 0.35, Method: Composition-based stats.
Identities = 37/111 (33%), Positives = 50/111 (45%), Gaps = 20/111 (18%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCS---MNIPDNWRFL 64
P ED+ + Y+ E IFVAHN FD FLA+E RC + IP +
Sbjct: 76 PYFEDVAHTIYHYL-------EDTIFVAHNVH-FDYNFLARELVRCGTPPLTIPA----I 123
Query: 65 DTLPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASIL 115
DT+ LA+ + S L L E G+ E + H+A SD A +L
Sbjct: 124 DTVELAQIFLPTEKSF----RLSDLSESLGLSHE-NPHQADSDAQVTAELL 169
>gi|257416585|ref|ZP_05593579.1| DNA polymerase III [Enterococcus faecalis ARO1/DG]
gi|257158413|gb|EEU88373.1| DNA polymerase III [Enterococcus faecalis ARO1/DG]
Length = 929
Score = 40.0 bits (92), Expect = 0.35, Method: Composition-based stats.
Identities = 37/111 (33%), Positives = 50/111 (45%), Gaps = 20/111 (18%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCS---MNIPDNWRFL 64
P ED+ + Y+ E IFVAHN FD FLA+E RC + IP +
Sbjct: 76 PYFEDVAHTIYHYL-------EDTIFVAHNVH-FDYNFLARELVRCGTPPLTIPA----I 123
Query: 65 DTLPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASIL 115
DT+ LA+ + S L L E G+ E + H+A SD A +L
Sbjct: 124 DTVELAQIFLPTEKSF----RLSDLSESLGLSHE-NPHQADSDAQVTAELL 169
>gi|257084662|ref|ZP_05579023.1| DNA polymerase III [Enterococcus faecalis Fly1]
gi|256992692|gb|EEU79994.1| DNA polymerase III [Enterococcus faecalis Fly1]
Length = 929
Score = 40.0 bits (92), Expect = 0.35, Method: Composition-based stats.
Identities = 37/111 (33%), Positives = 50/111 (45%), Gaps = 20/111 (18%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCS---MNIPDNWRFL 64
P ED+ + Y+ E IFVAHN FD FLA+E RC + IP +
Sbjct: 76 PYFEDVAHTIYHYL-------EDTIFVAHNVH-FDYNFLARELVRCGTPPLTIPA----I 123
Query: 65 DTLPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASIL 115
DT+ LA+ + S L L E G+ E + H+A SD A +L
Sbjct: 124 DTVELAQIFLPTEKSF----RLSDLSESLGLSHE-NPHQADSDAQVTAELL 169
>gi|256963550|ref|ZP_05567721.1| DNA polymerase III [Enterococcus faecalis HIP11704]
gi|307271490|ref|ZP_07552762.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0855]
gi|256954046|gb|EEU70678.1| DNA polymerase III [Enterococcus faecalis HIP11704]
gi|306511762|gb|EFM80760.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0855]
Length = 929
Score = 40.0 bits (92), Expect = 0.35, Method: Composition-based stats.
Identities = 37/111 (33%), Positives = 50/111 (45%), Gaps = 20/111 (18%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCS---MNIPDNWRFL 64
P ED+ + Y+ E IFVAHN FD FLA+E RC + IP +
Sbjct: 76 PYFEDVAHTIYHYL-------EDTIFVAHNVH-FDYNFLARELVRCGTPPLTIPA----I 123
Query: 65 DTLPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASIL 115
DT+ LA+ + S L L E G+ E + H+A SD A +L
Sbjct: 124 DTVELAQIFLPTEKSF----RLSDLSESLGLSHE-NPHQADSDAQVTAELL 169
>gi|256961321|ref|ZP_05565492.1| DNA polymerase III [Enterococcus faecalis Merz96]
gi|293383606|ref|ZP_06629516.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
R712]
gi|293387281|ref|ZP_06631838.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
S613]
gi|312906156|ref|ZP_07765168.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
DAPTO 512]
gi|312909501|ref|ZP_07768356.1| putative DnaQ family exonuclease/DinG family helicase [Enterococcus
faecalis DAPTO 516]
gi|256951817|gb|EEU68449.1| DNA polymerase III [Enterococcus faecalis Merz96]
gi|291079118|gb|EFE16482.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
R712]
gi|291083318|gb|EFE20281.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
S613]
gi|310627802|gb|EFQ11085.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
DAPTO 512]
gi|311290174|gb|EFQ68730.1| putative DnaQ family exonuclease/DinG family helicase [Enterococcus
faecalis DAPTO 516]
Length = 929
Score = 40.0 bits (92), Expect = 0.35, Method: Composition-based stats.
Identities = 37/111 (33%), Positives = 50/111 (45%), Gaps = 20/111 (18%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCS---MNIPDNWRFL 64
P ED+ + Y+ E IFVAHN FD FLA+E RC + IP +
Sbjct: 76 PYFEDVAHTIYHYL-------EDTIFVAHNVH-FDYNFLARELVRCGTPPLTIPA----I 123
Query: 65 DTLPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASIL 115
DT+ LA+ + S L L E G+ E + H+A SD A +L
Sbjct: 124 DTVELAQIFLPTEKSF----RLSDLSESLGLSHE-NPHQADSDAQVTAELL 169
>gi|256853717|ref|ZP_05559082.1| DNA polymerase III [Enterococcus faecalis T8]
gi|307291048|ref|ZP_07570934.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0411]
gi|422684239|ref|ZP_16742482.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX4000]
gi|256710660|gb|EEU25703.1| DNA polymerase III [Enterococcus faecalis T8]
gi|306497897|gb|EFM67428.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0411]
gi|315030986|gb|EFT42918.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX4000]
Length = 929
Score = 40.0 bits (92), Expect = 0.35, Method: Composition-based stats.
Identities = 37/111 (33%), Positives = 50/111 (45%), Gaps = 20/111 (18%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCS---MNIPDNWRFL 64
P ED+ + Y+ E IFVAHN FD FLA+E RC + IP +
Sbjct: 76 PYFEDVAHTIYHYL-------EDTIFVAHNVH-FDYNFLARELVRCGTPPLTIPA----I 123
Query: 65 DTLPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASIL 115
DT+ LA+ + S L L E G+ E + H+A SD A +L
Sbjct: 124 DTVELAQIFLPTEKSF----RLSDLSESLGLSHE-NPHQADSDAQVTAELL 169
>gi|256763069|ref|ZP_05503649.1| DNA polymerase III [Enterococcus faecalis T3]
gi|257079582|ref|ZP_05573943.1| DNA polymerase III [Enterococcus faecalis JH1]
gi|294779459|ref|ZP_06744857.1| putative DnaQ family exonuclease/DinG family helicase [Enterococcus
faecalis PC1.1]
gi|307270866|ref|ZP_07552153.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX4248]
gi|312903707|ref|ZP_07762881.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0635]
gi|397700569|ref|YP_006538357.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
D32]
gi|422736826|ref|ZP_16793088.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX1341]
gi|256684320|gb|EEU24015.1| DNA polymerase III [Enterococcus faecalis T3]
gi|256987612|gb|EEU74914.1| DNA polymerase III [Enterococcus faecalis JH1]
gi|294453465|gb|EFG21869.1| putative DnaQ family exonuclease/DinG family helicase [Enterococcus
faecalis PC1.1]
gi|306512779|gb|EFM81424.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX4248]
gi|310632899|gb|EFQ16182.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0635]
gi|315166434|gb|EFU10451.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX1341]
gi|397337208|gb|AFO44880.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
D32]
Length = 929
Score = 40.0 bits (92), Expect = 0.35, Method: Composition-based stats.
Identities = 37/111 (33%), Positives = 50/111 (45%), Gaps = 20/111 (18%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCS---MNIPDNWRFL 64
P ED+ + Y+ E IFVAHN FD FLA+E RC + IP +
Sbjct: 76 PYFEDVAHTIYHYL-------EDTIFVAHNVH-FDYNFLARELVRCGTPPLTIPA----I 123
Query: 65 DTLPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASIL 115
DT+ LA+ + S L L E G+ E + H+A SD A +L
Sbjct: 124 DTVELAQIFLPTEKSF----RLSDLSESLGLSHE-NPHQADSDAQVTAELL 169
>gi|256617168|ref|ZP_05474014.1| DNA polymerase III [Enterococcus faecalis ATCC 4200]
gi|307277210|ref|ZP_07558314.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX2134]
gi|256596695|gb|EEU15871.1| DNA polymerase III [Enterococcus faecalis ATCC 4200]
gi|295113409|emb|CBL32046.1| DnaQ family exonuclease/DinG family helicase, putative
[Enterococcus sp. 7L76]
gi|306506140|gb|EFM75306.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX2134]
Length = 929
Score = 40.0 bits (92), Expect = 0.35, Method: Composition-based stats.
Identities = 37/111 (33%), Positives = 50/111 (45%), Gaps = 20/111 (18%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCS---MNIPDNWRFL 64
P ED+ + Y+ E IFVAHN FD FLA+E RC + IP +
Sbjct: 76 PYFEDVAHTIYHYL-------EDTIFVAHNVH-FDYNFLARELVRCGTPPLTIPA----I 123
Query: 65 DTLPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASIL 115
DT+ LA+ + S L L E G+ E + H+A SD A +L
Sbjct: 124 DTVELAQIFLPTEKSF----RLSDLSESLGLSHE-NPHQADSDAQVTAELL 169
>gi|229549451|ref|ZP_04438176.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
faecalis ATCC 29200]
gi|256956656|ref|ZP_05560827.1| DNA polymerase III [Enterococcus faecalis DS5]
gi|257419833|ref|ZP_05596827.1| DNA polymerase III [Enterococcus faecalis T11]
gi|300861259|ref|ZP_07107346.1| helicase, DnaQ family exonuclease/DinG family [Enterococcus
faecalis TUSoD Ef11]
gi|312953414|ref|ZP_07772254.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0102]
gi|384513772|ref|YP_005708865.1| DNA-directed DNA polymerase III subunit epsilon [Enterococcus
faecalis OG1RF]
gi|422693172|ref|ZP_16751186.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0031]
gi|422701382|ref|ZP_16759223.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX1342]
gi|422725994|ref|ZP_16782451.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0312]
gi|430359629|ref|ZP_19425881.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
faecalis OG1X]
gi|229305688|gb|EEN71684.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
faecalis ATCC 29200]
gi|256947152|gb|EEU63784.1| DNA polymerase III [Enterococcus faecalis DS5]
gi|257161661|gb|EEU91621.1| DNA polymerase III [Enterococcus faecalis T11]
gi|300850298|gb|EFK78048.1| helicase, DnaQ family exonuclease/DinG family [Enterococcus
faecalis TUSoD Ef11]
gi|310628623|gb|EFQ11906.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0102]
gi|315152082|gb|EFT96098.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0031]
gi|315159114|gb|EFU03131.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0312]
gi|315170323|gb|EFU14340.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX1342]
gi|327535661|gb|AEA94495.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
faecalis OG1RF]
gi|429513253|gb|ELA02840.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
faecalis OG1X]
Length = 929
Score = 40.0 bits (92), Expect = 0.35, Method: Composition-based stats.
Identities = 37/111 (33%), Positives = 50/111 (45%), Gaps = 20/111 (18%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCS---MNIPDNWRFL 64
P ED+ + Y+ E IFVAHN FD FLA+E RC + IP +
Sbjct: 76 PYFEDVAHTIYHYL-------EDTIFVAHNVH-FDYNFLARELVRCGTPPLTIPA----I 123
Query: 65 DTLPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASIL 115
DT+ LA+ + S L L E G+ E + H+A SD A +L
Sbjct: 124 DTVELAQIFLPTEKSF----RLSDLSESLGLSHE-NPHQADSDAQVTAELL 169
>gi|422732373|ref|ZP_16788713.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0645]
gi|315161735|gb|EFU05752.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0645]
Length = 929
Score = 40.0 bits (92), Expect = 0.35, Method: Composition-based stats.
Identities = 37/111 (33%), Positives = 50/111 (45%), Gaps = 20/111 (18%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCS---MNIPDNWRFL 64
P ED+ + Y+ E IFVAHN FD FLA+E RC + IP +
Sbjct: 76 PYFEDVAHTIYHYL-------EDTIFVAHNVH-FDYNFLARELVRCGTPPLTIPA----I 123
Query: 65 DTLPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASIL 115
DT+ LA+ + S L L E G+ E + H+A SD A +L
Sbjct: 124 DTVELAQIFLPTEKSF----RLSDLSESLGLSHE-NPHQADSDAQVTAELL 169
>gi|257421980|ref|ZP_05598970.1| DNA polymerase III subunit epsilon [Enterococcus faecalis X98]
gi|422706950|ref|ZP_16764647.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0043]
gi|257163804|gb|EEU93764.1| DNA polymerase III subunit epsilon [Enterococcus faecalis X98]
gi|315155308|gb|EFT99324.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0043]
Length = 929
Score = 40.0 bits (92), Expect = 0.35, Method: Composition-based stats.
Identities = 37/111 (33%), Positives = 50/111 (45%), Gaps = 20/111 (18%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCS---MNIPDNWRFL 64
P ED+ + Y+ E IFVAHN FD FLA+E RC + IP +
Sbjct: 76 PYFEDVAHTIYHYL-------EDTIFVAHNVH-FDYNFLARELVRCGTPPLTIPA----I 123
Query: 65 DTLPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASIL 115
DT+ LA+ + S L L E G+ E + H+A SD A +L
Sbjct: 124 DTVELAQIFLPTEKSF----RLSDLSESLGLSHE-NPHQADSDAQVTAELL 169
>gi|257087406|ref|ZP_05581767.1| DNA polymerase III [Enterococcus faecalis D6]
gi|422724797|ref|ZP_16781273.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX2137]
gi|424675732|ref|ZP_18112629.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
599]
gi|256995436|gb|EEU82738.1| DNA polymerase III [Enterococcus faecalis D6]
gi|315025444|gb|EFT37376.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX2137]
gi|402350368|gb|EJU85272.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
599]
Length = 929
Score = 40.0 bits (92), Expect = 0.35, Method: Composition-based stats.
Identities = 37/111 (33%), Positives = 50/111 (45%), Gaps = 20/111 (18%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCS---MNIPDNWRFL 64
P ED+ + Y+ E IFVAHN FD FLA+E RC + IP +
Sbjct: 76 PYFEDVAHTIYHYL-------EDTIFVAHNVH-FDYNFLARELVRCGTPPLTIPA----I 123
Query: 65 DTLPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASIL 115
DT+ LA+ + S L L E G+ E + H+A SD A +L
Sbjct: 124 DTVELAQIFLPTEKSF----RLSDLSESLGLSHE-NPHQADSDAQVTAELL 169
>gi|255975219|ref|ZP_05425805.1| DNA polymerase III [Enterococcus faecalis T2]
gi|307285838|ref|ZP_07565972.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0860]
gi|255968091|gb|EET98713.1| DNA polymerase III [Enterococcus faecalis T2]
gi|306502599|gb|EFM71866.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0860]
Length = 929
Score = 40.0 bits (92), Expect = 0.35, Method: Composition-based stats.
Identities = 37/111 (33%), Positives = 50/111 (45%), Gaps = 20/111 (18%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCS---MNIPDNWRFL 64
P ED+ + Y+ E IFVAHN FD FLA+E RC + IP +
Sbjct: 76 PYFEDVAHTIYHYL-------EDTIFVAHNVH-FDYNFLARELVRCGTPPLTIPA----I 123
Query: 65 DTLPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASIL 115
DT+ LA+ + S L L E G+ E + H+A SD A +L
Sbjct: 124 DTVELAQIFLPTEKSF----RLSDLSESLGLSHE-NPHQADSDAQVTAELL 169
>gi|447914234|ref|YP_007395488.1| DNA polymerase III alpha subunit [Enterococcus faecium NRRL B-2354]
gi|445194320|gb|AGE31427.1| DNA polymerase III alpha subunit [Enterococcus faecium NRRL B-2354]
Length = 295
Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 15/101 (14%)
Query: 7 VPRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDT 66
+P ED P ++ +++ VAHNA FD+ FL + + ++ + R +DT
Sbjct: 187 MPTFEDFSPQLMSFISCY-------TLVAHNAP-FDLKFLLHQLNENNIELNQRIRVIDT 238
Query: 67 LPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSD 107
LPLAR + + L L++Y L+ ++H A+ D
Sbjct: 239 LPLARRHFE-----TPNHKLITLKDYLN--LDNNSHDALED 272
>gi|325989695|ref|YP_004249394.1| DNA polymerase III polC-type [Mycoplasma suis KI3806]
gi|323574780|emb|CBZ40440.1| DNA polymerase III, polC-type [Mycoplasma suis KI3806]
Length = 1438
Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 42/93 (45%), Gaps = 4/93 (4%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
+ +AHN FD PFL E + + DN LDTL L + L + G S SL A+
Sbjct: 474 TVLIAHNGIDFDFPFLNSELRKSGLEPLDN-PILDTLRLCKAL--EEGKKSKSYSLFAIA 530
Query: 91 EYFGI-PLEGSAHRAMSDVNSLASILERITSDL 122
+ I +E H + D LA + E + L
Sbjct: 531 KKMSINVVEQELHNSEYDTRCLAKMWEFWSQQL 563
>gi|399528694|ref|YP_006560681.1| DNA polymerase III epsilon subunit [Croceibacter phage P2559S]
gi|392284409|gb|AFM54839.1| DNA polymerase III epsilon subunit [Croceibacter phage P2559S]
Length = 246
Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 11/84 (13%)
Query: 35 AHNARRFDVPFLAKEFSRCSMNIPDNW---RFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+N+ FDVP L +EF+R + P F+ L L R+ V+S +
Sbjct: 90 GYNSDNFDVPLLIEEFNRAEIEYPAAGAAINFVAVLKLERK-------VNSHKLTDTYKR 142
Query: 92 YFGIPLEGSAHRAMSDVNSLASIL 115
Y G L+G AH A++DV + A +L
Sbjct: 143 YTGKELDG-AHDALNDVRATAEVL 165
>gi|378766838|ref|YP_005195301.1| exodeoxyribonuclease X [Pantoea ananatis LMG 5342]
gi|365186314|emb|CCF09264.1| exodeoxyribonuclease X [Pantoea ananatis LMG 5342]
Length = 222
Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 57/119 (47%), Gaps = 19/119 (15%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
++VAHNA FD P L + I W + TL LAR+L + S S+ Q LR
Sbjct: 79 VYVAHNAA-FDRPKLPQ--------ITAPW--ICTLKLARKLYPELESHSN----QYLRY 123
Query: 92 YF----GIPLEGSAHRAMSDVNSLASILERITSDLNFTLSDLLKTSFRANFDHSKKNKK 146
+F +P AHRA+ D A++L R+ D T++ + S R + H+ + K
Sbjct: 124 HFMLDVDVPENLHAHRALYDCYVTAALLLRLNRDARLTIAQMRDISARPSLLHTIRFGK 182
>gi|357973976|ref|ZP_09137947.1| DNA polymerase III, epsilon subunit [Sphingomonas sp. KC8]
Length = 234
Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 45/98 (45%), Gaps = 7/98 (7%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
A VAHNA FD FL E +C + R +DTL +AR+ + G +K SL AL
Sbjct: 84 APLVAHNAT-FDFTFLNAELEQCGLETISLTRMIDTLAIARQ--RHPG---AKHSLDALC 137
Query: 91 EYFGIPLEGSA-HRAMSDVNSLASILERITSDLNFTLS 127
+GI H A+ D L+ + +T LS
Sbjct: 138 SRYGIDRSHRVKHGALLDAQLLSQLYVELTGGRQIGLS 175
>gi|325973260|ref|YP_004250324.1| DNA polymerase III PolC [Mycoplasma suis str. Illinois]
gi|323651862|gb|ADX97944.1| DNA polymerase III, PolC [Mycoplasma suis str. Illinois]
Length = 1438
Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 42/93 (45%), Gaps = 4/93 (4%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
+ +AHN FD PFL E + + DN LDTL L + L + G S SL A+
Sbjct: 474 TVLIAHNGIDFDFPFLNSELRKSGLEPLDN-PILDTLRLCKAL--EEGKKSKSYSLFAIA 530
Query: 91 EYFGI-PLEGSAHRAMSDVNSLASILERITSDL 122
+ I +E H + D LA + E + L
Sbjct: 531 KKMSINVVEQELHNSEYDTRCLAKMWEFWSQQL 563
>gi|431125928|ref|ZP_19498755.1| exonuclease, DNA polymerase III, epsilon subunit [Enterococcus
faecium E1613]
gi|430566718|gb|ELB05818.1| exonuclease, DNA polymerase III, epsilon subunit [Enterococcus
faecium E1613]
Length = 295
Score = 39.7 bits (91), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 15/101 (14%)
Query: 7 VPRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDT 66
+P ED P ++ +++ VAHNA FD+ FL + + ++ + R +DT
Sbjct: 187 MPTFEDFSPQLMSFISCY-------TLVAHNAP-FDLKFLLHQLNENNIELNQRIRVIDT 238
Query: 67 LPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSD 107
LPLAR + + L L++Y L+ ++H A+ D
Sbjct: 239 LPLARRHFE-----TPNHKLITLKDYLN--LDNNSHDALED 272
>gi|257897430|ref|ZP_05677083.1| DNA polymerase subunit III [Enterococcus faecium Com12]
gi|257833995|gb|EEV60416.1| DNA polymerase subunit III [Enterococcus faecium Com12]
Length = 291
Score = 39.7 bits (91), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 15/101 (14%)
Query: 7 VPRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDT 66
+P ED P ++ +++ VAHNA FD+ FL + + ++ + R +DT
Sbjct: 187 MPTFEDFSPQLMSFISCY-------TLVAHNAP-FDLKFLLHQLNENNIELNQRIRVIDT 238
Query: 67 LPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSD 107
LPLAR + + L L++Y L+ ++H A+ D
Sbjct: 239 LPLARRHFE-----TPNHKLITLKDYLN--LDNNSHDALED 272
>gi|344306216|ref|XP_003421784.1| PREDICTED: three prime repair exonuclease 2-like [Loxodonta
africana]
Length = 315
Score = 39.7 bits (91), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 40/86 (46%), Gaps = 7/86 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKT-----SL 86
VAHN +D P L E R ++P + LDTLP R L + + + SL
Sbjct: 192 CLVAHNGFDYDFPLLCTELQRLGAHLPPDTVCLDTLPALRGLDRAHSHGTRAQGRKGYSL 251
Query: 87 QAL-REYFGIPLEGSAHRAMSDVNSL 111
+L R YF +AH A DV++L
Sbjct: 252 GSLFRRYFQA-EPSAAHSAEGDVHTL 276
>gi|257900260|ref|ZP_05679913.1| DNA polymerase subunit III [Enterococcus faecium Com15]
gi|406581167|ref|ZP_11056330.1| DNA polymerase III subunit epsilon [Enterococcus sp. GMD4E]
gi|406583490|ref|ZP_11058551.1| DNA polymerase III subunit epsilon [Enterococcus sp. GMD3E]
gi|406585806|ref|ZP_11060765.1| DNA polymerase III subunit epsilon [Enterococcus sp. GMD2E]
gi|406590955|ref|ZP_11065289.1| DNA polymerase III subunit epsilon [Enterococcus sp. GMD1E]
gi|430845497|ref|ZP_19463383.1| exonuclease, DNA polymerase III, epsilon subunit [Enterococcus
faecium E1050]
gi|430854125|ref|ZP_19471846.1| exonuclease, DNA polymerase III, epsilon subunit [Enterococcus
faecium E1258]
gi|431087358|ref|ZP_19496129.1| exonuclease, DNA polymerase III, epsilon subunit [Enterococcus
faecium E1604]
gi|431268696|ref|ZP_19506243.1| exonuclease, DNA polymerase III, epsilon subunit [Enterococcus
faecium E1623]
gi|257838172|gb|EEV63246.1| DNA polymerase subunit III [Enterococcus faecium Com15]
gi|404452951|gb|EKA00087.1| DNA polymerase III subunit epsilon [Enterococcus sp. GMD4E]
gi|404456573|gb|EKA03261.1| DNA polymerase III subunit epsilon [Enterococcus sp. GMD3E]
gi|404462035|gb|EKA07871.1| DNA polymerase III subunit epsilon [Enterococcus sp. GMD2E]
gi|404468589|gb|EKA13517.1| DNA polymerase III subunit epsilon [Enterococcus sp. GMD1E]
gi|430495520|gb|ELA71686.1| exonuclease, DNA polymerase III, epsilon subunit [Enterococcus
faecium E1050]
gi|430539539|gb|ELA79784.1| exonuclease, DNA polymerase III, epsilon subunit [Enterococcus
faecium E1258]
gi|430564017|gb|ELB03207.1| exonuclease, DNA polymerase III, epsilon subunit [Enterococcus
faecium E1604]
gi|430576024|gb|ELB14710.1| exonuclease, DNA polymerase III, epsilon subunit [Enterococcus
faecium E1623]
Length = 295
Score = 39.7 bits (91), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 15/101 (14%)
Query: 7 VPRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDT 66
+P ED P ++ +++ VAHNA FD+ FL + + ++ + R +DT
Sbjct: 187 MPTFEDFSPQLMSFISCY-------TLVAHNAP-FDLKFLLHQLNENNIELNQRIRVIDT 238
Query: 67 LPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSD 107
LPLAR + + L L++Y L+ ++H A+ D
Sbjct: 239 LPLARRHFE-----TPNHKLITLKDYLN--LDNNSHDALED 272
>gi|433444858|ref|ZP_20409600.1| bifunctional protein: ATP-dependent DNA helicase/DNA polymerase III
subunit epsilon [Anoxybacillus flavithermus TNO-09.006]
gi|432001398|gb|ELK22276.1| bifunctional protein: ATP-dependent DNA helicase/DNA polymerase III
subunit epsilon [Anoxybacillus flavithermus TNO-09.006]
Length = 880
Score = 39.7 bits (91), Expect = 0.39, Method: Composition-based stats.
Identities = 27/61 (44%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 29 EIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQA 88
E A FVAHN + FD FL +EF R + P R LDT+ LAR LM S +A
Sbjct: 83 EGAYFVAHNVQ-FDWAFLQEEFIRSGIQ-PPTCRLLDTVELARFLMPTQSSYKLNHLAEA 140
Query: 89 L 89
L
Sbjct: 141 L 141
>gi|431742105|ref|ZP_19531002.1| exonuclease, DNA polymerase III, epsilon subunit [Enterococcus
faecium E2039]
gi|430600626|gb|ELB38264.1| exonuclease, DNA polymerase III, epsilon subunit [Enterococcus
faecium E2039]
Length = 295
Score = 39.7 bits (91), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 15/101 (14%)
Query: 7 VPRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDT 66
+P ED P ++ +++ VAHNA FD+ FL + + ++ + R +DT
Sbjct: 187 MPTFEDFSPQLMSFISCY-------TLVAHNAP-FDLKFLLHQLNENNIELNQRIRVIDT 238
Query: 67 LPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSD 107
LPLAR + + L L++Y L+ ++H A+ D
Sbjct: 239 LPLARRHFE-----TPNHKLITLKDYLN--LDNNSHDALED 272
>gi|257889197|ref|ZP_05668850.1| DNA polymerase III subunit epsilon [Enterococcus faecium 1,141,733]
gi|257825269|gb|EEV52183.1| DNA polymerase III subunit epsilon [Enterococcus faecium 1,141,733]
Length = 295
Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 15/101 (14%)
Query: 7 VPRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDT 66
+P ED P ++ +++ VAHNA FD+ FL + + ++ + R +DT
Sbjct: 187 MPTFEDFSPQLMSFISCY-------TLVAHNAP-FDLKFLLHQLNENNIELNQRIRVIDT 238
Query: 67 LPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSD 107
LPLAR + + L L++Y L+ ++H A+ D
Sbjct: 239 LPLARRHFE-----TPNHKLITLKDYLN--LDNNSHDALED 272
>gi|227550341|ref|ZP_03980390.1| possible DNA polymerase III subunit epsilon [Enterococcus faecium
TX1330]
gi|257886431|ref|ZP_05666084.1| DNA polymerase III epsilon subunit [Enterococcus faecium 1,231,501]
gi|227180543|gb|EEI61515.1| possible DNA polymerase III subunit epsilon [Enterococcus faecium
TX1330]
gi|257822287|gb|EEV49417.1| DNA polymerase III epsilon subunit [Enterococcus faecium 1,231,501]
Length = 297
Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 15/101 (14%)
Query: 7 VPRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDT 66
+P ED P ++ +++ VAHNA FD+ FL + + ++ + R +DT
Sbjct: 189 MPTFEDFSPQLMSFISCY-------TLVAHNAP-FDLKFLLHQLNENNIELNQRIRVIDT 240
Query: 67 LPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSD 107
LPLAR + + L L++Y L+ ++H A+ D
Sbjct: 241 LPLARRHFE-----TPNHKLITLKDYLN--LDNNSHDALED 274
>gi|212638970|ref|YP_002315490.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Anoxybacillus flavithermus WK1]
gi|212560450|gb|ACJ33505.1| DNA polymerase III, epsilon subunit and Rad3-related DNA helicase
[Anoxybacillus flavithermus WK1]
Length = 880
Score = 39.7 bits (91), Expect = 0.40, Method: Composition-based stats.
Identities = 25/51 (49%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 29 EIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGS 79
E A FVAHN + FD FL +EF R + P R LDT+ LAR LM S
Sbjct: 83 EGAYFVAHNVQ-FDWAFLQEEFIRSGIQ-PPTCRLLDTVELARFLMPTQSS 131
>gi|167624226|ref|YP_001674520.1| DNA polymerase III subunit epsilon [Shewanella halifaxensis
HAW-EB4]
gi|167354248|gb|ABZ76861.1| DNA polymerase III, epsilon subunit [Shewanella halifaxensis
HAW-EB4]
Length = 213
Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 33 FVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREY 92
VAHNA FD FL E SR + N P +F ++ +AR L + + L +L Y
Sbjct: 98 LVAHNAS-FDQRFLDAELSRVNCNYP--GQFACSMLIARRLYQD----APNHKLGSLIHY 150
Query: 93 FGIPLEGSAHRAMSDVNSLASILERITSDLN 123
I +G HRA++D A + + DLN
Sbjct: 151 KNIQHDGVFHRALADSEMTADLWLVMLEDLN 181
>gi|392972135|ref|ZP_10337527.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Staphylococcus equorum subsp. equorum Mu2]
gi|392509848|emb|CCI60828.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Staphylococcus equorum subsp. equorum Mu2]
Length = 900
Score = 39.7 bits (91), Expect = 0.40, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 40/84 (47%), Gaps = 7/84 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
IFVAHN FD+ F+ K F C +N + +DTL EL K L L E
Sbjct: 86 IFVAHNVA-FDLNFIKKSFKNCDINYRPK-KVMDTL----ELFKVAFPTDKSYQLSELAE 139
Query: 92 YFGIPLEGSAHRAMSDVNSLASIL 115
GI L +AHRA D + A ++
Sbjct: 140 AHGIVLN-NAHRADEDAATTAQLM 162
>gi|422648109|ref|ZP_16711234.1| exonuclease [Pseudomonas syringae pv. maculicola str. ES4326]
gi|330961648|gb|EGH61908.1| exonuclease [Pseudomonas syringae pv. maculicola str. ES4326]
Length = 203
Score = 39.7 bits (91), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 51/104 (49%), Gaps = 13/104 (12%)
Query: 28 GEIAIFV------AHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVS 81
G++A FV AHNA FD F E SR + F ++ LAR LM G+ +
Sbjct: 75 GDVADFVGATPLVAHNAS-FDQKFWDYELSRIQRKREQS--FACSMLLARRLMP--GAPN 129
Query: 82 SKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITSDLNFT 125
K L L Y +P G AHRAM+D A++ +T++L T
Sbjct: 130 HK--LGTLTSYARLPNTGKAHRAMADAEMAANLTAYLTNELRNT 171
>gi|269794889|ref|YP_003314344.1| exonuclease, DNA polymerase III subunit epsilon family
[Sanguibacter keddieii DSM 10542]
gi|269097074|gb|ACZ21510.1| exonuclease, DNA polymerase III, epsilon subunit family
[Sanguibacter keddieii DSM 10542]
Length = 616
Score = 39.7 bits (91), Expect = 0.41, Method: Composition-based stats.
Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 14/112 (12%)
Query: 5 SYVPRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFL 64
S P +E ++P +++ + VAHNA FD+ FL + P N + L
Sbjct: 122 SSAPSIELVLPSFLEFARG-------TVLVAHNAP-FDISFLKAAARSMDLAWPGN-QVL 172
Query: 65 DTLPLARELMKQNGSVSSKT-SLQALREYFGIPLEGSAHRAMSDVNSLASIL 115
DT+PLAR ++ ++ + + K +L AL P HRA+SD + ++
Sbjct: 173 DTVPLARRVVTRDEAPNHKLGTLAALFRATITP----DHRALSDARATVDVM 220
>gi|431904319|gb|ELK09710.1| Three prime repair exonuclease 2 [Pteropus alecto]
Length = 236
Score = 39.7 bits (91), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 7/86 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQA--- 88
VAHN +D P L E R ++P + LDTLP R L + + + +
Sbjct: 113 CLVAHNGFDYDFPLLCTELRRLGAHLPRDTICLDTLPALRGLDRAHSHSTRAQGCKGYSL 172
Query: 89 ---LREYFGIPLEGSAHRAMSDVNSL 111
R YF +AH A DV++L
Sbjct: 173 GSLFRRYFQAE-PSAAHSAEGDVHTL 197
>gi|425013812|ref|ZP_18424521.1| exonuclease, DNA polymerase III, epsilon subunit family
[Enterococcus faecium E417]
gi|403000228|gb|EJY14370.1| exonuclease, DNA polymerase III, epsilon subunit family
[Enterococcus faecium E417]
Length = 297
Score = 39.7 bits (91), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 15/101 (14%)
Query: 7 VPRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDT 66
+P ED P ++ +++ VAHNA FD+ FL + + ++ + R +DT
Sbjct: 189 MPTFEDFSPQLMSFISCY-------TLVAHNAP-FDLKFLLHQLNENNIELNQRIRVIDT 240
Query: 67 LPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSD 107
LPLAR + + L L++Y L+ ++H A+ D
Sbjct: 241 LPLARRHFE-----TPNHKLITLKDYLN--LDNNSHDALED 274
>gi|355725985|gb|AES08726.1| three prime repair exonuclease 2-like protein [Mustela putorius
furo]
Length = 236
Score = 39.7 bits (91), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 10/98 (10%)
Query: 20 YVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGS 79
+++ + GP VAHN +D P L E R +P++ LDTLP R L + +
Sbjct: 104 FLSRQEGP---VCLVAHNGFDYDFPLLCTELRRLGARLPEDTVCLDTLPALRSLDRAHSH 160
Query: 80 VSSKTSLQA------LREYFGIPLEGSAHRAMSDVNSL 111
+ + R YF +AH A DV+ L
Sbjct: 161 GTRAQGCKGYSLGSLFRRYFQAE-PSAAHSAEGDVHML 197
>gi|91775906|ref|YP_545662.1| DNA polymerase III, epsilon subunit [Methylobacillus flagellatus
KT]
gi|91709893|gb|ABE49821.1| DNA polymerase III, epsilon subunit [Methylobacillus flagellatus
KT]
Length = 462
Score = 39.7 bits (91), Expect = 0.41, Method: Composition-based stats.
Identities = 34/101 (33%), Positives = 44/101 (43%), Gaps = 8/101 (7%)
Query: 15 PIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELM 74
P+ N L A+ AHN R FD FL EF R + + N L T+ L+R L
Sbjct: 68 PLFKDVANELLSHLHGAVLCAHNVR-FDYGFLKNEFRRLDITLRQN--VLCTVKLSRRLY 124
Query: 75 KQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASIL 115
+ S L A+ GI + HRAM DV +A L
Sbjct: 125 PEYKS----HGLDAIIARHGIAC-AARHRAMGDVEVMAEFL 160
>gi|6755877|ref|NP_036037.1| three prime repair exonuclease 2 [Mus musculus]
gi|47606218|sp|Q9R1A9.1|TREX2_MOUSE RecName: Full=Three prime repair exonuclease 2; AltName: Full=3'-5'
exonuclease TREX2
gi|5731111|gb|AAD48777.1| 3'-5' exonuclease TREX2 [Mus musculus]
gi|74354406|gb|AAI04385.1| Three prime repair exonuclease 2 [Mus musculus]
gi|74355394|gb|AAI04386.1| Three prime repair exonuclease 2 [Mus musculus]
gi|148697953|gb|EDL29900.1| three prime repair exonuclease 2 [Mus musculus]
Length = 236
Score = 39.7 bits (91), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 38/88 (43%), Gaps = 11/88 (12%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
VAHN +D P L E R ++P + LDTLP R L + + S T Q +
Sbjct: 113 CLVAHNGFDYDFPLLCTELQRLGAHLPQDTVCLDTLPALRGLDRAH---SHGTRAQGRKS 169
Query: 92 YFGIPL--------EGSAHRAMSDVNSL 111
Y L +AH A DV++L
Sbjct: 170 YSLASLFHRYFQAEPSAAHSAEGDVHTL 197
>gi|403046540|ref|ZP_10902009.1| ATP-dependent DNA helicase [Staphylococcus sp. OJ82]
gi|402763236|gb|EJX17329.1| ATP-dependent DNA helicase [Staphylococcus sp. OJ82]
Length = 900
Score = 39.7 bits (91), Expect = 0.42, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 40/84 (47%), Gaps = 7/84 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
IFVAHN FD+ F+ K F C +N + +DTL EL K L L E
Sbjct: 86 IFVAHNVA-FDLNFIKKSFKNCDINYRPK-KVMDTL----ELFKVAFPTDKSYQLSELAE 139
Query: 92 YFGIPLEGSAHRAMSDVNSLASIL 115
GI L +AHRA D + A ++
Sbjct: 140 AHGIVLN-NAHRADEDAATTAQLM 162
>gi|237801479|ref|ZP_04589940.1| exonuclease [Pseudomonas syringae pv. oryzae str. 1_6]
gi|422300158|ref|ZP_16387691.1| exonuclease [Pseudomonas avellanae BPIC 631]
gi|422587601|ref|ZP_16662271.1| exonuclease [Pseudomonas syringae pv. morsprunorum str. M302280]
gi|330873519|gb|EGH07668.1| exonuclease [Pseudomonas syringae pv. morsprunorum str. M302280]
gi|331024338|gb|EGI04395.1| exonuclease [Pseudomonas syringae pv. oryzae str. 1_6]
gi|407987742|gb|EKG30460.1| exonuclease [Pseudomonas avellanae BPIC 631]
Length = 203
Score = 39.7 bits (91), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 51/104 (49%), Gaps = 13/104 (12%)
Query: 28 GEIAIFV------AHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVS 81
G++A FV AHNA FD F E SR + F ++ LAR LM G+ +
Sbjct: 75 GDVADFVGSTPLVAHNAS-FDQKFWDYELSRIQRKREQS--FACSMLLARRLMP--GAPN 129
Query: 82 SKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITSDLNFT 125
K L L Y +P G AHRAM+D A++ +T++L T
Sbjct: 130 HK--LGTLTSYARLPNTGKAHRAMADAEMAANLTAYLTNELRNT 171
>gi|422660334|ref|ZP_16722748.1| exonuclease, putative [Pseudomonas syringae pv. lachrymans str.
M302278]
gi|331018941|gb|EGH98997.1| exonuclease, putative [Pseudomonas syringae pv. lachrymans str.
M302278]
Length = 204
Score = 39.7 bits (91), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 51/104 (49%), Gaps = 13/104 (12%)
Query: 28 GEIAIFV------AHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVS 81
G++A FV AHNA FD F E SR + F ++ LAR LM G+ +
Sbjct: 76 GDVADFVGSTPLVAHNAS-FDQKFWDYELSR--IQRKREQSFACSMLLARRLMP--GAPN 130
Query: 82 SKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITSDLNFT 125
K L L Y +P G AHRAM+D A++ +T++L T
Sbjct: 131 HK--LGTLTSYARLPNTGKAHRAMADAEMAANLTAYLTNELRNT 172
>gi|422597374|ref|ZP_16671648.1| exonuclease [Pseudomonas syringae pv. lachrymans str. M301315]
gi|422605133|ref|ZP_16677148.1| exonuclease [Pseudomonas syringae pv. mori str. 301020]
gi|422682019|ref|ZP_16740286.1| exonuclease [Pseudomonas syringae pv. tabaci str. ATCC 11528]
gi|330888790|gb|EGH21451.1| exonuclease [Pseudomonas syringae pv. mori str. 301020]
gi|330987665|gb|EGH85768.1| exonuclease [Pseudomonas syringae pv. lachrymans str. M301315]
gi|331011360|gb|EGH91416.1| exonuclease [Pseudomonas syringae pv. tabaci str. ATCC 11528]
Length = 203
Score = 39.7 bits (91), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 51/104 (49%), Gaps = 13/104 (12%)
Query: 28 GEIAIFV------AHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVS 81
G++A FV AHNA FD F E SR + F ++ LAR LM G+ +
Sbjct: 75 GDVADFVGATPLVAHNAS-FDQKFWDYELSR--IQRKREQSFACSMLLARRLMP--GAPN 129
Query: 82 SKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITSDLNFT 125
K L L Y +P G AHRAM+D A++ +T++L T
Sbjct: 130 HK--LGTLTSYARLPNTGKAHRAMADAEMAANLTAYLTNELRNT 171
>gi|422654671|ref|ZP_16717405.1| exonuclease [Pseudomonas syringae pv. actinidiae str. M302091]
gi|330967688|gb|EGH67948.1| exonuclease [Pseudomonas syringae pv. actinidiae str. M302091]
Length = 203
Score = 39.7 bits (91), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 51/104 (49%), Gaps = 13/104 (12%)
Query: 28 GEIAIFV------AHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVS 81
G++A FV AHNA FD F E SR + F ++ LAR LM G+ +
Sbjct: 75 GDVADFVGSTPLVAHNAS-FDQKFWDYELSR--IQRKREQSFACSMLLARRLMP--GAPN 129
Query: 82 SKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITSDLNFT 125
K L L Y +P G AHRAM+D A++ +T++L T
Sbjct: 130 HK--LGTLTSYARLPNTGKAHRAMADAEMAANLTAYLTNELRKT 171
>gi|146298639|ref|YP_001193230.1| hypothetical protein Fjoh_0877 [Flavobacterium johnsoniae UW101]
gi|146153057|gb|ABQ03911.1| hypothetical protein Fjoh_0877 [Flavobacterium johnsoniae UW101]
Length = 237
Score = 39.7 bits (91), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 47/107 (43%), Gaps = 24/107 (22%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDN--------WRF--LDTLPLARELMKQNGSVS 81
+ HNA+ FD+PFLA+ + IPD W LDTL L + G
Sbjct: 112 LLCGHNAKEFDIPFLARRMIINQIAIPDKLNLFGKKPWEIAHLDTLELWK-----FGDYK 166
Query: 82 SKTSLQALREYFGIP-----LEGS----AHRAMSDVNSLASILERIT 119
TSL+ L + G+P ++GS + D++ + + E+ T
Sbjct: 167 HFTSLKLLTKILGVPSPKGDIDGSQVAHVYYVEKDIDRIITYCEKDT 213
>gi|213966786|ref|ZP_03394937.1| exonuclease [Pseudomonas syringae pv. tomato T1]
gi|301383295|ref|ZP_07231713.1| exonuclease, putative [Pseudomonas syringae pv. tomato Max13]
gi|302062466|ref|ZP_07254007.1| exonuclease, putative [Pseudomonas syringae pv. tomato K40]
gi|302133448|ref|ZP_07259438.1| exonuclease, putative [Pseudomonas syringae pv. tomato NCPPB 1108]
gi|213928636|gb|EEB62180.1| exonuclease [Pseudomonas syringae pv. tomato T1]
Length = 204
Score = 39.7 bits (91), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 51/104 (49%), Gaps = 13/104 (12%)
Query: 28 GEIAIFV------AHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVS 81
G++A FV AHNA FD F E SR + F ++ LAR LM G+ +
Sbjct: 76 GDVADFVGSTPLVAHNAS-FDQKFWDYELSRIQRKREQS--FACSMLLARRLMP--GAPN 130
Query: 82 SKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITSDLNFT 125
K L L Y +P G AHRAM+D A++ +T++L T
Sbjct: 131 HK--LGTLTSYARLPNTGKAHRAMADAEMAANLTAYLTNELRNT 172
>gi|422585485|ref|ZP_16660557.1| exonuclease [Pseudomonas syringae pv. aesculi str. 0893_23]
gi|330870427|gb|EGH05136.1| exonuclease [Pseudomonas syringae pv. aesculi str. 0893_23]
Length = 203
Score = 39.7 bits (91), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
Query: 33 FVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREY 92
VAHNA FD F E SR + F ++ LAR LM G+ + K L L Y
Sbjct: 86 LVAHNAS-FDQKFWDYELSRIQRKREQS--FACSMLLARRLMP--GAPNHK--LGTLTSY 138
Query: 93 FGIPLEGSAHRAMSDVNSLASILERITSDLNFT 125
+P G AHRAM+D A++ +T++L T
Sbjct: 139 ARLPNTGKAHRAMADAEMAANLTAYLTNELRNT 171
>gi|47214707|emb|CAG01060.1| unnamed protein product [Tetraodon nigroviridis]
Length = 228
Score = 39.3 bits (90), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 10/88 (11%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIP-----DNWRFLDTLPLARELMKQNGSVSSKTSL 86
+ V HN RRFD P L + + W +DTL LA+EL++ + ++ +
Sbjct: 98 LIVGHNIRRFDGPLLGRVLDELDLRTQFESSVTGW--VDTLSLAQELLRGH-NLQNFRQE 154
Query: 87 QALREYFGIPLEGSAHRAMSDVNSLASI 114
+RE G L+ AH A+ DV +L ++
Sbjct: 155 TLVRELLG--LDYRAHDALQDVRALQAL 180
>gi|171056716|ref|YP_001789065.1| DNA polymerase III subunit epsilon [Leptothrix cholodnii SP-6]
gi|170774161|gb|ACB32300.1| DNA polymerase III, epsilon subunit [Leptothrix cholodnii SP-6]
Length = 210
Score = 39.3 bits (90), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 49/109 (44%), Gaps = 11/109 (10%)
Query: 29 EIAIF------VAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSS 82
E+A F VAHNA FD F E R F T+ L+R L + +
Sbjct: 76 EVAAFTRGCPMVAHNAA-FDRGFWLAERERAGCEPDLAQEFACTVLLSRRLNTE----AP 130
Query: 83 KTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITSDLNFTLSDLLK 131
L L +FG+P G AHRA++D + A +L R+ + +D L+
Sbjct: 131 NHKLGTLASWFGLPNNGRAHRALADALTTAHLLVRLQDLVAQRYADQLQ 179
>gi|13473785|ref|NP_105353.1| DNA polymerase III subunit epsilon [Mesorhizobium loti MAFF303099]
gi|14024536|dbj|BAB51139.1| DNA polymerase III epsilon chain [Mesorhizobium loti MAFF303099]
Length = 240
Score = 39.3 bits (90), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 40/85 (47%), Gaps = 7/85 (8%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
A VAHNA FD+ FL EF R + D R +DTL LAR SL AL
Sbjct: 84 AKLVAHNAT-FDIGFLNVEFGRLGHPVVDPGRVVDTLALARRKHPMG-----PNSLDALC 137
Query: 91 EYFGIP-LEGSAHRAMSDVNSLASI 114
+GI + + H A+ D LA +
Sbjct: 138 RRYGIDNTKRTKHGALLDSELLAEV 162
>gi|257482174|ref|ZP_05636215.1| exonuclease [Pseudomonas syringae pv. tabaci str. ATCC 11528]
gi|298156614|gb|EFH97709.1| DNA polymerase III alpha subunit [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
Length = 204
Score = 39.3 bits (90), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
Query: 33 FVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREY 92
VAHNA FD F E SR + F ++ LAR LM G+ + K L L Y
Sbjct: 87 LVAHNAS-FDQKFWDYELSRIQRKREQS--FACSMLLARRLMP--GAPNHK--LGTLTSY 139
Query: 93 FGIPLEGSAHRAMSDVNSLASILERITSDLNFT 125
+P G AHRAM+D A++ +T++L T
Sbjct: 140 ARLPNTGKAHRAMADAEMAANLTAYLTNELRNT 172
>gi|424780448|ref|ZP_18207321.1| DNA polymerase III alpha subunit [Catellicoccus marimammalium
M35/04/3]
gi|422842850|gb|EKU27297.1| DNA polymerase III alpha subunit [Catellicoccus marimammalium
M35/04/3]
Length = 298
Score = 39.3 bits (90), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 15/101 (14%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
I V H+ FD+ FL++ F N +++DT+ +R+L + L L E
Sbjct: 94 IIVGHHTS-FDIRFLSQNFKE-----EVNNKYIDTIQFSRKLYPE----LRNYKLSTLTE 143
Query: 92 YFGIPLEGSAHRAMSDVNSLASILERITSDL---NFTLSDL 129
Y L + HR++ D S + +RI +D+ N T+ DL
Sbjct: 144 YLN--LHENTHRSLDDCISTKELYDRIKNDMKEKNLTIQDL 182
>gi|392404640|ref|YP_006441252.1| Exonuclease RNase T and DNA polymerase III [Turneriella parva DSM
21527]
gi|390612594|gb|AFM13746.1| Exonuclease RNase T and DNA polymerase III [Turneriella parva DSM
21527]
Length = 250
Score = 39.3 bits (90), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 10/90 (11%)
Query: 29 EIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQA 88
E + VAHNA FD+ L E + + RF+ T +A L + + + +LQ
Sbjct: 93 ETGVLVAHNAP-FDISMLVAEGVQVN-------RFICTYRVAFALDRNDAL--PEYNLQY 142
Query: 89 LREYFGIPLEGSAHRAMSDVNSLASILERI 118
LR FG+ +E +AH A DV L + E +
Sbjct: 143 LRYAFGLEIEAAAHDAEGDVKVLRGVFEHL 172
>gi|289627588|ref|ZP_06460542.1| exonuclease [Pseudomonas syringae pv. aesculi str. NCPPB 3681]
Length = 204
Score = 39.3 bits (90), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
Query: 33 FVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREY 92
VAHNA FD F E SR + F ++ LAR LM G+ + K L L Y
Sbjct: 87 LVAHNAS-FDQKFWDYELSRIQRKREQS--FACSMLLARRLMP--GAPNHK--LGTLTSY 139
Query: 93 FGIPLEGSAHRAMSDVNSLASILERITSDLNFT 125
+P G AHRAM+D A++ +T++L T
Sbjct: 140 ARLPNTGKAHRAMADAEMAANLTAYLTNELRNT 172
>gi|302880064|ref|YP_003848628.1| DNA polymerase III subunit epsilon [Gallionella capsiferriformans
ES-2]
gi|302582853|gb|ADL56864.1| DNA polymerase III, epsilon subunit [Gallionella capsiferriformans
ES-2]
Length = 204
Score = 39.3 bits (90), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 43/93 (46%), Gaps = 7/93 (7%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
A +VAHNA FD FL E+SR M F ++ LAR L S L L
Sbjct: 84 APWVAHNAS-FDSRFLDAEWSR--MGHRREQAFACSMLLARRLYPD----SPNHKLGTLV 136
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILERITSDLN 123
+ G+P HRA++D A + R+ SDL
Sbjct: 137 RFLGLPDTARHHRALADAEMTAHLWLRMVSDLK 169
>gi|335044623|ref|ZP_08537648.1| DNA polymerase III, epsilon subunit and related 3'-5' exonuclease
[Methylophaga aminisulfidivorans MP]
gi|333787869|gb|EGL53753.1| DNA polymerase III, epsilon subunit and related 3'-5' exonuclease
[Methylophaga aminisulfidivorans MP]
Length = 480
Score = 39.3 bits (90), Expect = 0.49, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
I VAHNAR FD FL +EF R + + + L ++ L+R + ++ S +Q R
Sbjct: 81 ILVAHNAR-FDYSFLKQEFKRVGYDY--SAKTLCSVKLSRRVYPRHQGHSLDKIIQ--RH 135
Query: 92 YFGIPLEGSAHRAMSDVNSLASILERITSDLNFTL 126
IP HRAM+D +++ S I ++ TL
Sbjct: 136 QIDIP---DRHRAMADTDAILSYFTIIQQQVDETL 167
>gi|312131262|ref|YP_003998602.1| 3'-5' exonuclease, polb [Leadbetterella byssophila DSM 17132]
gi|311907808|gb|ADQ18249.1| 3'-5' exonuclease, PolB [Leadbetterella byssophila DSM 17132]
Length = 232
Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 50/114 (43%), Gaps = 18/114 (15%)
Query: 28 GEIAIFVAHNARRFDVPFLAKEFSRCSMNIPD--------NWRF--LDTLPLARELMKQN 77
G+ I AHN + FD P+L + + +PD W LDTL M +
Sbjct: 99 GKRLILCAHNGKEFDFPYLCRRMIIHGIPLPDVLQMSGKKPWEIPHLDTLE-----MWKF 153
Query: 78 GSVSSKTSLQALREYFGIPLEGS-AHRAMSDVNSLASILERITSDLNFTLSDLL 130
G TSL L GI EGS S VN+ + +RIT +++ + D++
Sbjct: 154 GDYKHFTSLDLLAAVLGI--EGSKGSLDGSKVNAAYYLEDRITDIIHYCMEDVV 205
>gi|289649837|ref|ZP_06481180.1| exonuclease [Pseudomonas syringae pv. aesculi str. 2250]
Length = 204
Score = 39.3 bits (90), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
Query: 33 FVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREY 92
VAHNA FD F E SR + F ++ LAR LM G+ + K L L Y
Sbjct: 87 LVAHNAS-FDQKFWDYELSRIQRKREQS--FACSMLLARRLMP--GAPNHK--LGTLTSY 139
Query: 93 FGIPLEGSAHRAMSDVNSLASILERITSDLNFT 125
+P G AHRAM+D A++ +T++L T
Sbjct: 140 ARLPNTGKAHRAMADAEMAANLTAYLTNELRNT 172
>gi|390169681|ref|ZP_10221614.1| DNA polymerase III subunit epsilon [Sphingobium indicum B90A]
gi|389587685|gb|EIM65747.1| DNA polymerase III subunit epsilon [Sphingobium indicum B90A]
Length = 230
Score = 39.3 bits (90), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 42/96 (43%), Gaps = 7/96 (7%)
Query: 33 FVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREY 92
VAHNAR FD FL E C + R +DT+ +AR+L +K SL AL
Sbjct: 86 LVAHNAR-FDFGFLNHELRLCGLPEVSMARMIDTVAIARQLHP-----GAKHSLDALCTR 139
Query: 93 FGIPLEGS-AHRAMSDVNSLASILERITSDLNFTLS 127
+GI H A+ D LA + +T L
Sbjct: 140 YGIDRSHRIKHGALLDAELLAQLYIELTGGRQIGLG 175
>gi|393763994|ref|ZP_10352607.1| DNA polymerase III subunit epsilon [Alishewanella agri BL06]
gi|392605308|gb|EIW88206.1| DNA polymerase III subunit epsilon [Alishewanella agri BL06]
Length = 749
Score = 39.3 bits (90), Expect = 0.52, Method: Composition-based stats.
Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 12/92 (13%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRC--SMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQA 88
A+FVAHNA+ FD F+ EF+RC + ++P ++ M++ + SL
Sbjct: 663 AVFVAHNAK-FDYGFIRAEFARCDITFDMPQLCTVVN--------MRRYYPGLASYSLGK 713
Query: 89 LREYFGIPLEGSAHRAMSDVNSLASILERITS 120
L E F I L + HRA++D + A +L+ I +
Sbjct: 714 LCEEFEINLN-NHHRALADATATAELLKLINA 744
>gi|416018679|ref|ZP_11565607.1| exonuclease [Pseudomonas syringae pv. glycinea str. B076]
gi|416024591|ref|ZP_11568652.1| exonuclease [Pseudomonas syringae pv. glycinea str. race 4]
gi|320322651|gb|EFW78744.1| exonuclease [Pseudomonas syringae pv. glycinea str. B076]
gi|320330564|gb|EFW86543.1| exonuclease [Pseudomonas syringae pv. glycinea str. race 4]
Length = 204
Score = 39.3 bits (90), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
Query: 33 FVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREY 92
VAHNA FD F E SR + F ++ LAR LM G+ + K L L Y
Sbjct: 87 LVAHNAS-FDQKFWDYELSR--IQRKREQSFACSMLLARRLMP--GAPNHK--LGTLTSY 139
Query: 93 FGIPLEGSAHRAMSDVNSLASILERITSDLNFT 125
+P G AHRAM+D A++ +T++L T
Sbjct: 140 ARLPNTGKAHRAMADAEMAANLTAYLTNELRNT 172
>gi|375110632|ref|ZP_09756852.1| DNA polymerase III, epsilon subunit [Alishewanella jeotgali KCTC
22429]
gi|374569206|gb|EHR40369.1| DNA polymerase III, epsilon subunit [Alishewanella jeotgali KCTC
22429]
Length = 749
Score = 39.3 bits (90), Expect = 0.53, Method: Composition-based stats.
Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 12/92 (13%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRC--SMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQA 88
A+FVAHNA+ FD F+ EF+RC + ++P ++ M++ SL
Sbjct: 663 AVFVAHNAK-FDYGFIRSEFARCDITFDMPQLCTVVN--------MRRYYPGLQSYSLGK 713
Query: 89 LREYFGIPLEGSAHRAMSDVNSLASILERITS 120
L E F I L + HRA++D + A +L+ I +
Sbjct: 714 LCEEFEIKLN-NHHRALADATATAELLKLINA 744
>gi|117920694|ref|YP_869886.1| DNA polymerase III subunit epsilon [Shewanella sp. ANA-3]
gi|117613026|gb|ABK48480.1| DNA polymerase III, epsilon subunit [Shewanella sp. ANA-3]
Length = 229
Score = 39.3 bits (90), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 7/90 (7%)
Query: 33 FVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREY 92
VAHNA FD FL EFS+ P +F +L LAR L + + L L +
Sbjct: 112 LVAHNAT-FDQRFLDAEFSQIGHQYPG--QFGCSLLLARRLYPE----AINHQLATLVRH 164
Query: 93 FGIPLEGSAHRAMSDVNSLASILERITSDL 122
+P G+ HRA++D + R+ +DL
Sbjct: 165 KQLPTNGTYHRALADAEMTGHLWLRMLADL 194
>gi|72161431|ref|YP_289088.1| hypothetical protein Tfu_1027 [Thermobifida fusca YX]
gi|71915163|gb|AAZ55065.1| DNA polymerase III, epsilon subunit [Thermobifida fusca YX]
Length = 590
Score = 39.3 bits (90), Expect = 0.54, Method: Composition-based stats.
Identities = 40/122 (32%), Positives = 57/122 (46%), Gaps = 10/122 (8%)
Query: 27 PGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSL 86
PG + VAHNA FDV FL +R + P LDTL LAR L+ + G V + L
Sbjct: 128 PG--TVLVAHNAP-FDVRFLKAACARHGIPWPSP-AVLDTLQLARRLVPR-GEVRNH-RL 181
Query: 87 QALREYFGIPLEGSAHRAMSDVNSLASILERITSDLNFTLSDLLKT--SFRANFDHSKKN 144
L FG AHRA+ D + A +L + L D + +FR+ +++
Sbjct: 182 DTLARVFGA--HPPAHRALDDARATADVLRGLVGRLRARGVDTWEELRAFRSPVTSGQRS 239
Query: 145 KK 146
K+
Sbjct: 240 KR 241
>gi|397678135|ref|YP_006519671.1| DNA polymerase III polC-type [Mycoplasma wenyonii str.
Massachusetts]
gi|395456400|gb|AFN65342.1| DNA polymerase III polC-type [Mycoplasma wenyonii str.
Massachusetts]
Length = 1438
Score = 39.3 bits (90), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 4/96 (4%)
Query: 29 EIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQA 88
E + +AHN FD+PFL ++ + M P LDTL LA+ + + S S SL A
Sbjct: 474 EGTVLMAHNGLEFDLPFLNAQYKKAEME-PLVAPLLDTLLLAKAIEGEKKSKS--YSLLA 530
Query: 89 LREYFGIPL-EGSAHRAMSDVNSLASILERITSDLN 123
L + + + E H A D + L + + LN
Sbjct: 531 LSKKMSLHIAEKELHSAEYDTHCLVRLWKYWEKQLN 566
>gi|392392558|ref|YP_006429160.1| DNA polymerase III subunit alpha [Desulfitobacterium dehalogenans
ATCC 51507]
gi|390523636|gb|AFL99366.1| DNA polymerase III, alpha chain [Desulfitobacterium dehalogenans
ATCC 51507]
Length = 1446
Score = 39.3 bits (90), Expect = 0.55, Method: Composition-based stats.
Identities = 37/121 (30%), Positives = 59/121 (48%), Gaps = 15/121 (12%)
Query: 29 EIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQA 88
E ++ VAHNA FD+ FL N ++ +LDTL LAREL + L
Sbjct: 500 EGSVLVAHNAD-FDMGFLKHTAKVLGYNF--DYTYLDTLSLARELFPDYKTY----KLGR 552
Query: 89 LREYFGIPLEGSAHRAMSDVNSLASILERITSDLN----FTLSDLLKTSFRANFDHSKKN 144
+ + GI +E AHRA+ DV + + + L TL+D+ +A+ + +KK+
Sbjct: 553 IAKNLGIKVE-VAHRALDDVGTTVKVFNIMVDMLKERGVETLADI---DLKASDESAKKD 608
Query: 145 K 145
+
Sbjct: 609 E 609
>gi|319638605|ref|ZP_07993367.1| DNA polymerase III subunit [Neisseria mucosa C102]
gi|317400354|gb|EFV81013.1| DNA polymerase III subunit [Neisseria mucosa C102]
Length = 463
Score = 39.3 bits (90), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 49/98 (50%), Gaps = 8/98 (8%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
A+ VAHN+R FD FL EF+R + L T+ L+R L + K SL ++
Sbjct: 99 AVVVAHNSR-FDYTFLRHEFARIHTDFAAP--SLCTVQLSRRLYPE----FYKHSLDSII 151
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILERITSDLNFTLSD 128
E GI + HRAM+DV +L LE ++ N D
Sbjct: 152 ERTGIQ-TANRHRAMTDVVALCDYLELSLTEKNHQQWD 188
>gi|146310412|ref|YP_001175486.1| DNA polymerase III subunit epsilon [Enterobacter sp. 638]
gi|145317288|gb|ABP59435.1| DNA polymerase III, epsilon subunit [Enterobacter sp. 638]
Length = 245
Score = 39.3 bits (90), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 51/111 (45%), Gaps = 17/111 (15%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFL--- 64
P D+ I+Y+N A V HNA FD+ F+ EFS+ + NIP F
Sbjct: 80 PTFADVADEFIEYING-------AELVIHNAS-FDIGFMDYEFSKLNRNIPKTNTFCKVT 131
Query: 65 DTLPLARELMKQNGSVSSKTSLQALREYFGIP-LEGSAHRAMSDVNSLASI 114
D+L LAR++ + SL AL + I + + H A+ D LA +
Sbjct: 132 DSLALARKMYP-----GKRNSLDALCSRYEIDNSKRTLHGALLDAQILADV 177
>gi|241759673|ref|ZP_04757773.1| DNA polymerase III subunit [Neisseria flavescens SK114]
gi|241319681|gb|EER56077.1| DNA polymerase III subunit [Neisseria flavescens SK114]
Length = 463
Score = 39.3 bits (90), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 49/98 (50%), Gaps = 8/98 (8%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
A+ VAHN+R FD FL EF+R + L T+ L+R L + K SL ++
Sbjct: 99 AVVVAHNSR-FDYTFLRHEFARIHTDFAAP--SLCTVQLSRRLYPE----FYKHSLDSII 151
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILERITSDLNFTLSD 128
E GI + HRAM+DV +L LE ++ N D
Sbjct: 152 ERTGIQ-TANRHRAMTDVVALCDYLELSLAEKNHQQWD 188
>gi|294009991|ref|YP_003543451.1| DNA polymerase III epsilon subunit [Sphingobium japonicum UT26S]
gi|292673321|dbj|BAI94839.1| DNA polymerase III epsilon subunit [Sphingobium japonicum UT26S]
Length = 230
Score = 39.3 bits (90), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 42/96 (43%), Gaps = 7/96 (7%)
Query: 33 FVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREY 92
VAHNAR FD FL E C + R +DT+ +AR+L +K SL AL
Sbjct: 86 LVAHNAR-FDFGFLNHELRLCGLPEVSMARMIDTVAIARQLHP-----GAKHSLDALCTR 139
Query: 93 FGIPLEGS-AHRAMSDVNSLASILERITSDLNFTLS 127
+GI H A+ D LA + +T L
Sbjct: 140 YGIDRSHRIKHGALLDAELLAQLYIELTGGRQIGLG 175
>gi|351701409|gb|EHB04328.1| Three prime repair exonuclease 2 [Heterocephalus glaber]
Length = 236
Score = 39.3 bits (90), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 5/85 (5%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKT-----SL 86
VAHN +D P L E R ++P + LDTLP R L + + + SL
Sbjct: 113 CLVAHNGFDYDFPLLCTELQRLGAHLPQDTVCLDTLPALRGLDRAHSHGTRAQGRKGYSL 172
Query: 87 QALREYFGIPLEGSAHRAMSDVNSL 111
+L + +AH A DV++L
Sbjct: 173 GSLFHRYFQAEPSAAHSAEGDVHTL 197
>gi|146329568|ref|YP_001209798.1| DNA polymerase III subunit epsilon [Dichelobacter nodosus VCS1703A]
gi|146233038|gb|ABQ14016.1| DNA polymerase III, epsilon subunit [Dichelobacter nodosus
VCS1703A]
Length = 233
Score = 39.3 bits (90), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 58/124 (46%), Gaps = 18/124 (14%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEF--SRCSMNIPDNWRFLD 65
P +D++P Y+ S VAHN FD F+ +E + C + D + +D
Sbjct: 75 PFFKDVLPEFEAYLAS------ADELVAHNIA-FDRQFIDRELQLAGCDYRLGDKFTLVD 127
Query: 66 TLPLARELMKQNGSVSSKTSLQALREYFGIPLEG-SAHRAMSDVNSLASILERIT---SD 121
+L +ARE ++ +L AL + FG+ G H A+ D LA + ++T SD
Sbjct: 128 SLKIAREKF-----AGARNNLDALCKRFGVDNTGRELHGALLDAQLLAEVYLKLTGGQSD 182
Query: 122 LNFT 125
L+F
Sbjct: 183 LSFA 186
>gi|387130604|ref|YP_006293494.1| DNA polymerase III subunit epsilon [Methylophaga sp. JAM7]
gi|386271893|gb|AFJ02807.1| DNA polymerase III epsilon subunit [Methylophaga sp. JAM7]
Length = 487
Score = 39.3 bits (90), Expect = 0.58, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 8/90 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+ VAH+AR FD FL+ EF R ++ L ++ L+R L K + A+
Sbjct: 91 VLVAHHAR-FDYRFLSAEFRRSGIDFTSP--TLCSVKLSRALYPNQ----KKHGIDAIVS 143
Query: 92 YFGIPLEGSAHRAMSDVNSLASILERITSD 121
G+ + + HRAM D + S+ E+I+ D
Sbjct: 144 RLGLTI-ANRHRAMDDTKVIVSLFEQISRD 172
>gi|405977223|gb|EKC41682.1| hypothetical protein CGI_10028428 [Crassostrea gigas]
Length = 348
Score = 39.3 bits (90), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 42/92 (45%), Gaps = 18/92 (19%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCS-----MNIPDNWRFLDTLPLARELMKQNGSVSSKTSL 86
I V HN FD P L RC NI D FLDTL R +++ G S +
Sbjct: 155 ILVGHNVESFDSPILMYALDRCKKLESFTNIVDG--FLDTLKFFR--IERPGLSSYR--- 207
Query: 87 QALREYFGIPLEG---SAHRAMSDVNSLASIL 115
+EY L G AH A+SDV SL S++
Sbjct: 208 ---QEYLCKNLAGIDYDAHDALSDVLSLQSLI 236
>gi|354488871|ref|XP_003506589.1| PREDICTED: three prime repair exonuclease 2-like [Cricetulus
griseus]
gi|344236004|gb|EGV92107.1| Three prime repair exonuclease 2 [Cricetulus griseus]
Length = 236
Score = 39.3 bits (90), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 42/99 (42%), Gaps = 11/99 (11%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
VAHN +D P L E R ++P + LDTLP R L + + S T Q +
Sbjct: 113 CLVAHNGFDYDFPLLCTELQRLGAHLPRDTVCLDTLPALRGLDRAH---SHGTRAQGRKS 169
Query: 92 YFGIPL--------EGSAHRAMSDVNSLASILERITSDL 122
Y L +AH A DV++L I ++L
Sbjct: 170 YSLTSLFHRYFQAEPSAAHSAEGDVHTLLLIFLHRAAEL 208
>gi|332876762|ref|ZP_08444520.1| exonuclease [Capnocytophaga sp. oral taxon 329 str. F0087]
gi|357047364|ref|ZP_09108971.1| exonuclease [Paraprevotella clara YIT 11840]
gi|332685321|gb|EGJ58160.1| exonuclease [Capnocytophaga sp. oral taxon 329 str. F0087]
gi|355529965|gb|EHG99390.1| exonuclease [Paraprevotella clara YIT 11840]
Length = 256
Score = 39.3 bits (90), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 18/115 (15%)
Query: 33 FVAHNARRFDVPFLAKEFSRCSMNIPDNWR-FLDTLPLARELMKQNGSVSSKTSLQALRE 91
F N+ RFDVP L +EF R ++I R F+D + +L + +T A +
Sbjct: 90 FAGFNSNRFDVPMLVEEFLRAGIDIDIRKRKFIDVQNIYHKLER-------RTLSAAYKF 142
Query: 92 YFGIPLEGSAHRAMSDVNSLASIL--------ERITSDLNFTLSDLLKTSFRANF 138
Y G LE +AH A++D + +L E + +D+ F LSD + + +F
Sbjct: 143 YCGKDLE-NAHSALADTRATYEVLMAQLDHYPEDLKNDVAF-LSDFSRMTDNVDF 195
>gi|326405243|ref|YP_004285325.1| DNA polymerase III epsilon subunit [Acidiphilium multivorum AIU301]
gi|325052105|dbj|BAJ82443.1| DNA polymerase III epsilon subunit [Acidiphilium multivorum AIU301]
Length = 235
Score = 39.3 bits (90), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 40/89 (44%), Gaps = 7/89 (7%)
Query: 33 FVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREY 92
VAHNA FD FL EF+R D R +DTL LA++ SL AL
Sbjct: 87 LVAHNAP-FDFGFLDAEFARIGRAALDRARMIDTLALAKQRFP-----GMPNSLDALCRR 140
Query: 93 FGIPLEG-SAHRAMSDVNSLASILERITS 120
F I L + H A+ D LA + +T
Sbjct: 141 FDIDLSARTTHNALLDCKLLAEVYVELTG 169
>gi|127512799|ref|YP_001093996.1| DNA polymerase III subunit epsilon [Shewanella loihica PV-4]
gi|126638094|gb|ABO23737.1| DNA polymerase III, epsilon subunit [Shewanella loihica PV-4]
Length = 204
Score = 39.3 bits (90), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 44/96 (45%), Gaps = 15/96 (15%)
Query: 33 FVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREY 92
VAHNA FD FL EF+R +++ + F +L LAR L + L L Y
Sbjct: 88 LVAHNAS-FDQKFLTAEFAR--IDLEQSQPFACSLLLARRLFQ----AVPNHQLGTLVNY 140
Query: 93 FGIPLEGSAHRAMSDVNSLASILERITSDLNFTLSD 128
GI +G HRA++D +T L LSD
Sbjct: 141 LGIANDGVFHRALNDA--------EVTGALWLALSD 168
>gi|15451563|gb|AAK98687.1|AC021893_21 Putative exonuclease [Oryza sativa Japonica Group]
gi|31432001|gb|AAP53700.1| exonuclease family protein, putative, expressed [Oryza sativa
Japonica Group]
Length = 493
Score = 38.9 bits (89), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
++ HN RFD+ + + F+ P+ +DTLPL L ++ G + + +L
Sbjct: 116 VWAGHNIVRFDLARIREAFAEIGRPPPEPKGMIDTLPL---LTQKFGRRAGDMKMASLAN 172
Query: 92 YFGIPLEGSAHRAMSDV 108
YFG+ + +HR++ DV
Sbjct: 173 YFGLGRQ--SHRSLDDV 187
>gi|66395669|ref|YP_240034.1| ORF013 [Staphylococcus phage 47]
gi|209363557|ref|YP_002267975.1| hypothetical protein phi2958PVL_gp05 [Staphylococcus phage
phi2958PVL]
gi|257428268|ref|ZP_05604666.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
65-1322]
gi|282905892|ref|ZP_06313747.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
Btn1260]
gi|282919259|ref|ZP_06326994.1| DNA polymerase III PolC-type [Staphylococcus aureus subsp. aureus
C427]
gi|284024544|ref|ZP_06378942.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp.
aureus 132]
gi|418428908|ref|ZP_13001884.1| hypothetical protein MQC_02617 [Staphylococcus aureus subsp. aureus
VRS2]
gi|418444564|ref|ZP_13016111.1| hypothetical protein MQM_02920 [Staphylococcus aureus subsp. aureus
VRS7]
gi|418447449|ref|ZP_13018899.1| hypothetical protein MQO_02650 [Staphylococcus aureus subsp. aureus
VRS8]
gi|418564651|ref|ZP_13129072.1| exonuclease [Staphylococcus aureus subsp. aureus 21264]
gi|418878400|ref|ZP_13432635.1| exonuclease family protein [Staphylococcus aureus subsp. aureus
CIG1165]
gi|418991411|ref|ZP_13539072.1| exonuclease family protein [Staphylococcus aureus subsp. aureus
CIG1096]
gi|418994211|ref|ZP_13541846.1| exonuclease family protein [Staphylococcus aureus subsp. aureus
CIG290]
gi|419786081|ref|ZP_14311821.1| exonuclease [Staphylococcus aureus subsp. aureus IS-M]
gi|62636093|gb|AAX91204.1| ORF013 [Staphylococcus phage 47]
gi|208973058|dbj|BAG74374.1| hypothetical protein [Staphylococcus phage phi2958PVL]
gi|257275109|gb|EEV06596.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
65-1322]
gi|282317069|gb|EFB47443.1| DNA polymerase III PolC-type [Staphylococcus aureus subsp. aureus
C427]
gi|282331184|gb|EFB60698.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
Btn1260]
gi|371975788|gb|EHO93080.1| exonuclease [Staphylococcus aureus subsp. aureus 21264]
gi|377694522|gb|EHT18887.1| exonuclease family protein [Staphylococcus aureus subsp. aureus
CIG1165]
gi|377723533|gb|EHT47658.1| exonuclease family protein [Staphylococcus aureus subsp. aureus
CIG1096]
gi|377744008|gb|EHT67986.1| exonuclease family protein [Staphylococcus aureus subsp. aureus
CIG290]
gi|383361298|gb|EID38674.1| exonuclease [Staphylococcus aureus subsp. aureus IS-M]
gi|387714696|gb|EIK02815.1| hypothetical protein MQC_02617 [Staphylococcus aureus subsp. aureus
VRS2]
gi|387731218|gb|EIK18538.1| hypothetical protein MQM_02920 [Staphylococcus aureus subsp. aureus
VRS7]
gi|387732129|gb|EIK19377.1| hypothetical protein MQO_02650 [Staphylococcus aureus subsp. aureus
VRS8]
Length = 306
Score = 38.9 bits (89), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
P+M + +I+++++ I VAHN FD+ L F + ++ +P N F T
Sbjct: 64 PKMYQMHEAIIRFLDNH-------IIVAHNTS-FDMYALCDSFKKYNLPLPSNQYFC-TY 114
Query: 68 PLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITSDLNFTLS 127
L+++L LQ L E+F I E H A D A I I D + L+
Sbjct: 115 RLSKDLYNL-----PSYRLQDLAEHFDIKNE-EYHNAFYDAKVCAKIAYNILKDQDANLN 168
Query: 128 DLLK 131
DL++
Sbjct: 169 DLVE 172
>gi|297610461|ref|NP_001064570.2| Os10g0407500 [Oryza sativa Japonica Group]
gi|255679392|dbj|BAF26484.2| Os10g0407500 [Oryza sativa Japonica Group]
Length = 517
Score = 38.9 bits (89), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
++ HN RFD+ + + F+ P+ +DTLPL L ++ G + + +L
Sbjct: 120 VWAGHNIVRFDLARIREAFAEIGRPPPEPKGMIDTLPL---LTQKFGRRAGDMKMASLAN 176
Query: 92 YFGIPLEGSAHRAMSDV 108
YFG+ + +HR++ DV
Sbjct: 177 YFGLGRQ--SHRSLDDV 191
>gi|381199324|ref|ZP_09906474.1| DNA polymerase III, epsilon subunit [Sphingobium yanoikuyae
XLDN2-5]
gi|427409414|ref|ZP_18899616.1| DNA polymerase III, epsilon subunit [Sphingobium yanoikuyae ATCC
51230]
gi|425711547|gb|EKU74562.1| DNA polymerase III, epsilon subunit [Sphingobium yanoikuyae ATCC
51230]
Length = 233
Score = 38.9 bits (89), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 42/96 (43%), Gaps = 7/96 (7%)
Query: 33 FVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREY 92
VAHNAR FD FL E C+ + R +DT+ +AR L +K SL AL
Sbjct: 86 LVAHNAR-FDFGFLNHELKLCARDAVSMDRMIDTVAIARTLHP-----GAKHSLDALCTR 139
Query: 93 FGIPLEGSA-HRAMSDVNSLASILERITSDLNFTLS 127
+GI H A+ D LA + +T L
Sbjct: 140 YGIDRSHRVKHGALLDAELLAQLYVELTGGRQIGLG 175
>gi|414074860|ref|YP_007000077.1| ATP-dependent helicase dinG-like protein [Lactococcus lactis subsp.
cremoris UC509.9]
gi|413974780|gb|AFW92244.1| ATP-dependent helicase dinG-like protein [Lactococcus lactis subsp.
cremoris UC509.9]
Length = 791
Score = 38.9 bits (89), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 54/122 (44%), Gaps = 17/122 (13%)
Query: 7 VPRMEDLIPIVIKYVNSRLGPGEIA----------IFVAHNARRFDVPFLAKEFSRCSMN 56
+PR+ +L + K + S E+A +FVAHNA RFD L K F +
Sbjct: 49 LPRISELTGLSDKQLKSAPDFSEVASEVRKLLTDSVFVAHNA-RFDYGLLEKSFLNAGLE 107
Query: 57 IPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILE 116
+ R +DT+ LAR K L+AL E + H A+SD + A +L
Sbjct: 108 FNEMLR-VDTVDLARVFY----PTFEKYGLEALSEKLDLA-HDHPHAAVSDAYATAELLI 161
Query: 117 RI 118
RI
Sbjct: 162 RI 163
>gi|296236689|ref|XP_002763437.1| PREDICTED: three prime repair exonuclease 2 [Callithrix jacchus]
Length = 278
Score = 38.9 bits (89), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 51/112 (45%), Gaps = 9/112 (8%)
Query: 20 YVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLAREL--MKQN 77
+++ + GP VAHN +D P L E R +P + LDTLP R L ++
Sbjct: 146 FLSRQAGP---ICLVAHNGFDYDFPLLCAELQRLGARLPRDTVCLDTLPALRGLDHAHRH 202
Query: 78 GSVS---SKTSLQALREYFGIPLEGSAHRAMSDVNSLASI-LERITSDLNFT 125
G+ + SL +L + +AH A DV++L I L R T L +
Sbjct: 203 GTRARGRQGYSLGSLFHRYFQAEPSAAHSAEGDVHTLLLIFLHRATELLTWA 254
>gi|302769470|ref|XP_002968154.1| hypothetical protein SELMODRAFT_89701 [Selaginella moellendorffii]
gi|300163798|gb|EFJ30408.1| hypothetical protein SELMODRAFT_89701 [Selaginella moellendorffii]
Length = 168
Score = 38.9 bits (89), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 5/91 (5%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
I+ HN FD + + F+ +P+ F+DTLPL L + G + L L
Sbjct: 79 IWAGHNICEFDNVRIEEAFASIGRPMPEAAGFIDTLPL---LQRTFGQRAGNLKLSTLAA 135
Query: 92 YFGIPLEGSAHRAMSDVNSLASILERITSDL 122
YF L HR++ DV +L+R + L
Sbjct: 136 YFS--LGKQEHRSLPDVRMNIKVLKRCATVL 164
>gi|26554369|ref|NP_758303.1| DNA polymerase III subunit alpha [Mycoplasma penetrans HF-2]
gi|26454379|dbj|BAC44707.1| DNA polymerase III subunit alpha [Mycoplasma penetrans HF-2]
Length = 1458
Score = 38.9 bits (89), Expect = 0.64, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 6/89 (6%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
++ +AHN +FD+PFL + M+I N +DTL ++R + +Q SL +
Sbjct: 500 SVLIAHNGIKFDLPFLNCKLEENKMDIIKN-PLIDTLQISRAINEQ----IHGHSLGVIA 554
Query: 91 EYFGIPL-EGSAHRAMSDVNSLASILERI 118
+ I E AHRA D L +I +R+
Sbjct: 555 RKYKIDYDETQAHRADKDAEYLLNIWKRM 583
>gi|116512711|ref|YP_811618.1| Rad3-related DNA helicase [Lactococcus lactis subsp. cremoris SK11]
gi|385837555|ref|YP_005875185.1| DinG family ATP-dependent helicase YoaA [Lactococcus lactis subsp.
cremoris A76]
gi|116108365|gb|ABJ73505.1| Rad3-related DNA helicase [Lactococcus lactis subsp. cremoris SK11]
gi|358748783|gb|AEU39762.1| DinG family ATP-dependent helicase YoaA [Lactococcus lactis subsp.
cremoris A76]
Length = 791
Score = 38.9 bits (89), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 54/122 (44%), Gaps = 17/122 (13%)
Query: 7 VPRMEDLIPIVIKYVNSRLGPGEIA----------IFVAHNARRFDVPFLAKEFSRCSMN 56
+PR+ +L + K + S E+A +FVAHNA RFD L K F +
Sbjct: 49 LPRISELTGLSDKQLKSAPDFSEVASEVRKLLTDSVFVAHNA-RFDYGLLEKSFLNAGLE 107
Query: 57 IPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILE 116
+ R +DT+ LAR K L+AL E + H A+SD + A +L
Sbjct: 108 FNEMLR-VDTVDLARVFY----PTFEKYGLEALSEKLDLA-HDHPHAAVSDAYATAELLI 161
Query: 117 RI 118
RI
Sbjct: 162 RI 163
>gi|256372239|ref|YP_003110063.1| Exonuclease RNase T and DNA polymerase III [Acidimicrobium
ferrooxidans DSM 10331]
gi|256008823|gb|ACU54390.1| Exonuclease RNase T and DNA polymerase III [Acidimicrobium
ferrooxidans DSM 10331]
Length = 475
Score = 38.9 bits (89), Expect = 0.67, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 7/90 (7%)
Query: 29 EIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQA 88
E + V HN R FD FL + +P+ LDTL L+R L+ +G V + L
Sbjct: 95 EGTVMVGHNVR-FDRSFLGAAADAAGITLPE-VPVLDTLTLSRVLL--DGEVPNH-RLAT 149
Query: 89 LREYFGIPLEGSAHRAMSDVNSLASILERI 118
L Y +P +HRAM+DV + ++L R+
Sbjct: 150 LAHYLQLP--PPSHRAMADVVTTVALLHRL 177
>gi|125624796|ref|YP_001033279.1| ATP-dependent helicase dinG-like protein [Lactococcus lactis subsp.
cremoris MG1363]
gi|389855174|ref|YP_006357418.1| ATP-dependent helicase dinG-like protein [Lactococcus lactis subsp.
cremoris NZ9000]
gi|124493604|emb|CAL98589.1| Probable ATP-dependent helicase dinG homolog [Lactococcus lactis
subsp. cremoris MG1363]
gi|300071596|gb|ADJ60996.1| ATP-dependent helicase dinG-like protein [Lactococcus lactis subsp.
cremoris NZ9000]
Length = 791
Score = 38.9 bits (89), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 54/122 (44%), Gaps = 17/122 (13%)
Query: 7 VPRMEDLIPIVIKYVNSRLGPGEIA----------IFVAHNARRFDVPFLAKEFSRCSMN 56
+PR+ +L + K + S E+A +FVAHNA RFD L K F +
Sbjct: 49 LPRISELTGLSDKQLKSAPDFSEVASEVRKLLTDSVFVAHNA-RFDYGLLEKSFLNAGLE 107
Query: 57 IPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILE 116
+ R +DT+ LAR K L+AL E + H A+SD + A +L
Sbjct: 108 FNEMLR-VDTVDLARVFY----PTFEKYGLEALSEKLDLA-HDHPHAAVSDAYATAELLI 161
Query: 117 RI 118
RI
Sbjct: 162 RI 163
>gi|440782598|ref|ZP_20960615.1| DNA polymerase III subunit alpha [Clostridium pasteurianum DSM 525]
gi|440220122|gb|ELP59331.1| DNA polymerase III subunit alpha [Clostridium pasteurianum DSM 525]
Length = 1449
Score = 38.9 bits (89), Expect = 0.67, Method: Composition-based stats.
Identities = 33/113 (29%), Positives = 59/113 (52%), Gaps = 15/113 (13%)
Query: 10 MEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPL 69
+E + P +++++ ++ VAHNA FDV FL K +R + ++ +LDTL L
Sbjct: 490 IEQVFPKMLEFIKG-------SVLVAHNAG-FDVGFL-KHNARV-LGYDFDFTYLDTLSL 539
Query: 70 ARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITSDL 122
A+E+ + L + ++ GI +E AHRA+ DV++ + E + L
Sbjct: 540 AQEVFPDFKTYK----LGRIAKHLGIKVE-VAHRALDDVDTTVKVFEVMLGKL 587
>gi|348552838|ref|XP_003462234.1| PREDICTED: three prime repair exonuclease 2-like [Cavia porcellus]
Length = 236
Score = 38.9 bits (89), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 5/85 (5%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKT-----SL 86
VAHN +D P L E R ++P + LDTLP R L + + + SL
Sbjct: 113 CLVAHNGFDYDFPLLCTELQRLGAHLPQDTICLDTLPALRGLDRAHSHGTRAQGRKGYSL 172
Query: 87 QALREYFGIPLEGSAHRAMSDVNSL 111
+L + +AH A DV++L
Sbjct: 173 GSLFHRYFQAEPSAAHSAEGDVHTL 197
>gi|335306664|ref|XP_003360533.1| PREDICTED: three prime repair exonuclease 2-like [Sus scrofa]
Length = 236
Score = 38.9 bits (89), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 10/98 (10%)
Query: 20 YVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGS 79
+++ + GP VAHN +D P L E R ++P + LDTLP R L + +
Sbjct: 104 FLSRQEGP---VCLVAHNGFDYDFPLLRTELWRLGAHLPQDTVCLDTLPALRSLDRAHSH 160
Query: 80 VSSKT-----SLQAL-REYFGIPLEGSAHRAMSDVNSL 111
+ SL +L R YF +AH A DV++L
Sbjct: 161 GTRAQGRKGYSLGSLFRRYFQAE-PSAAHSAEGDVHTL 197
>gi|226498878|ref|NP_001148000.1| UTP-glucose-P-uridyltransferase homolog [Zea mays]
gi|194706488|gb|ACF87328.1| unknown [Zea mays]
gi|195615060|gb|ACG29360.1| exonuclease [Zea mays]
gi|413934232|gb|AFW68783.1| exonuclease [Zea mays]
Length = 499
Score = 38.9 bits (89), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 12/104 (11%)
Query: 5 SYVPRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFL 64
S P D+ V +N R ++ HN RFD + + F+ + P +
Sbjct: 102 SAAPPFRDVADAVYDLLNGR-------VWAGHNIVRFDSARIREAFTEIGRSPPQPKGMI 154
Query: 65 DTLPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDV 108
DTLPL L ++ G + + +L YFG L HR++ DV
Sbjct: 155 DTLPL---LTQRFGRRAGDMKMASLANYFG--LGKQRHRSLDDV 193
>gi|255534253|ref|YP_003094624.1| DNA polymerase III epsilon subunit [Flavobacteriaceae bacterium
3519-10]
gi|255340449|gb|ACU06562.1| DNA polymerase III epsilon subunit [Flavobacteriaceae bacterium
3519-10]
Length = 407
Score = 38.9 bits (89), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
I V HN FD L +EF R + N LDT+PLA++L+ + S SL L
Sbjct: 81 TILVGHNID-FDYRMLRQEFKRLGYDFTINT--LDTIPLAKKLIPEAESY----SLGKLV 133
Query: 91 EYFGIPLEGSAHRAMSDVNS 110
+ GIPL HRA D +
Sbjct: 134 KSLGIPLV-DQHRASGDARA 152
>gi|110289067|gb|ABG66074.1| exonuclease family protein, putative, expressed [Oryza sativa
Japonica Group]
Length = 267
Score = 38.9 bits (89), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
++ HN RFD+ + + F+ P+ +DTLPL L ++ G + + +L
Sbjct: 116 VWAGHNIVRFDLARIREAFAEIGRPPPEPKGMIDTLPL---LTQKFGRRAGDMKMASLAN 172
Query: 92 YFGIPLEGSAHRAMSDV 108
YFG L +HR++ DV
Sbjct: 173 YFG--LGRQSHRSLDDV 187
>gi|375111664|ref|ZP_09757868.1| exonuclease, RNase T and DNA polymerase III [Alishewanella jeotgali
KCTC 22429]
gi|374568300|gb|EHR39479.1| exonuclease, RNase T and DNA polymerase III [Alishewanella jeotgali
KCTC 22429]
Length = 219
Score = 38.9 bits (89), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 52/107 (48%), Gaps = 9/107 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSL---QA 88
+FVAH+ R D FL + R P N +F+DTL + M++ G+V K +L Q+
Sbjct: 116 VFVAHHCR-LDRAFLQIAYQRLFGKAP-NMQFMDTLNIEWHRMQKQGTVMKKDALRLPQS 173
Query: 89 LREYFGIPLEGSAHRAMSDVNSLASIL--ERITSDLNFTLSDLLKTS 133
L + +P+ H A+ D A + + S + TL DLL S
Sbjct: 174 LARH-KLPVSAQ-HHALEDAYGCALLFLSQLKKSHPHITLGDLLVQS 218
>gi|160947401|ref|ZP_02094568.1| hypothetical protein PEPMIC_01335 [Parvimonas micra ATCC 33270]
gi|158446535|gb|EDP23530.1| DNA polymerase III, alpha subunit, Gram-positive type [Parvimonas
micra ATCC 33270]
Length = 1431
Score = 38.9 bits (89), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 8/85 (9%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
A+FVAHNA FD+ F+ R +N+ N F+DT+ AR ++ L L
Sbjct: 496 AVFVAHNA-EFDISFIKTNCKR--LNLEFNPTFIDTMGFARAILPH----LKNHKLNTLC 548
Query: 91 EYFGIPLEGSAHRAMSDVNSLASIL 115
+ G+ L + HRA D + A IL
Sbjct: 549 KELGVNLL-NHHRASFDAEACAGIL 572
>gi|68172041|ref|ZP_00545326.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
subunit [Ehrlichia chaffeensis str. Sapulpa]
gi|67998534|gb|EAM85303.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
subunit [Ehrlichia chaffeensis str. Sapulpa]
Length = 239
Score = 38.9 bits (89), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 7/98 (7%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
I V HNA FD+ F+ E R + + +++ +DTL LAR K+ VSS +L AL
Sbjct: 90 GILVIHNAG-FDIKFIKMELDRINKSYNSDFQVVDTLVLAR---KKFPGVSS--TLDALC 143
Query: 91 EYFGIPLEGSA-HRAMSDVNSLASILERITSDLNFTLS 127
F I L+ H A+ D L + ++ L +L
Sbjct: 144 RRFNISLQDRKFHGALLDATLLGKVYVQLMGGLQRSLE 181
>gi|242023941|ref|XP_002432389.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212517812|gb|EEB19651.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 289
Score = 38.9 bits (89), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
P E+ + ++I ++N P +AHN +FD P L ++ + ++ +PD+ D++
Sbjct: 83 PFCEEDVQVLIHFINRLPSP---VCLIAHNGNKFDFPILQRQLFKLNLKLPDSVYCADSI 139
Query: 68 PLARELMKQNGSV 80
+E+ N +
Sbjct: 140 KAFQEIYPNNSQL 152
>gi|74316845|ref|YP_314585.1| DNA polymerase III subunit epsilon [Thiobacillus denitrificans ATCC
25259]
gi|74056340|gb|AAZ96780.1| DNA polymerase III, epsilon subunit [Thiobacillus denitrificans
ATCC 25259]
Length = 470
Score = 38.9 bits (89), Expect = 0.76, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+F+AHNAR FD FL E+ R + L T+ L+R L ++ + +L +L
Sbjct: 89 LFIAHNAR-FDYGFLKHEYQRLGRRFRAD--VLCTVRLSRRLFPEH----YRHNLDSLIA 141
Query: 92 YFGIPLEGSAHRAMSDVN 109
G+ EG HRA++D +
Sbjct: 142 RHGLATEGDRHRALADAD 159
>gi|242039735|ref|XP_002467262.1| hypothetical protein SORBIDRAFT_01g022250 [Sorghum bicolor]
gi|241921116|gb|EER94260.1| hypothetical protein SORBIDRAFT_01g022250 [Sorghum bicolor]
Length = 505
Score = 38.9 bits (89), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 12/104 (11%)
Query: 5 SYVPRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFL 64
S P D+ V +N R ++ HN RFD + + F+ + P +
Sbjct: 108 SGAPPFRDVADAVYDLLNGR-------VWAGHNIVRFDSARIREAFTEIGRSPPQPKGMI 160
Query: 65 DTLPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDV 108
DTLPL L ++ G + + +L YFG L HR++ DV
Sbjct: 161 DTLPL---LTQRFGRRAGDMKMASLANYFG--LGKQRHRSLDDV 199
>gi|227499278|ref|ZP_03929390.1| DNA-directed DNA polymerase [Anaerococcus tetradius ATCC 35098]
gi|227218629|gb|EEI83863.1| DNA-directed DNA polymerase [Anaerococcus tetradius ATCC 35098]
Length = 1358
Score = 38.9 bits (89), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 15/109 (13%)
Query: 7 VPRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDT 66
P++E+++P +++ +I V N FDV F+ + +R ++ N +LDT
Sbjct: 404 CPKIEEVLPGFLEFCQG-------SILVGQNTD-FDVGFVRENCTRLGLDF--NPLYLDT 453
Query: 67 LPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASIL 115
LP+AR L K SL + IP + HRA D + A I
Sbjct: 454 LPMARALFAD----MKKFSLDKIARKLEIPA-FNHHRASDDARATAQIF 497
>gi|114047347|ref|YP_737897.1| DNA polymerase III subunit epsilon [Shewanella sp. MR-7]
gi|113888789|gb|ABI42840.1| DNA polymerase III, epsilon subunit [Shewanella sp. MR-7]
Length = 239
Score = 38.5 bits (88), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 7/90 (7%)
Query: 33 FVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREY 92
VAHNA FD FL EF++ P +F +L LAR L + + L L +
Sbjct: 122 LVAHNAA-FDQRFLDAEFAQIGHQYPG--QFGCSLLLARRLYPE----AINHQLATLVRH 174
Query: 93 FGIPLEGSAHRAMSDVNSLASILERITSDL 122
+P +G+ HRA++D + R+ +DL
Sbjct: 175 KQLPTDGTFHRALADAEMTGHLWLRMLADL 204
>gi|225374652|ref|ZP_03751873.1| hypothetical protein ROSEINA2194_00271 [Roseburia inulinivorans DSM
16841]
gi|225213511|gb|EEG95865.1| hypothetical protein ROSEINA2194_00271 [Roseburia inulinivorans DSM
16841]
Length = 228
Score = 38.5 bits (88), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 6/91 (6%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
I V HN + FD+ FL ++ R N ++DTL +A+ + L L E
Sbjct: 97 ILVGHNIQTFDMKFLYRDCERLFQQKLTN-DYVDTLRVAKLCFPE----WRHRRLSDLAE 151
Query: 92 YFGIPLEGSAHRAMSDVNSLASILERITSDL 122
++GI G AHRA++D + E + +L
Sbjct: 152 HYGISTRG-AHRALTDCKMNQQVFEYLAKEL 181
>gi|228471852|ref|ZP_04056623.1| conserved hypothetical protein [Capnocytophaga gingivalis ATCC
33624]
gi|228276782|gb|EEK15485.1| conserved hypothetical protein [Capnocytophaga gingivalis ATCC
33624]
Length = 239
Score = 38.5 bits (88), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 56/135 (41%), Gaps = 25/135 (18%)
Query: 4 RSYVPRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDN--- 60
RS+V D++ Y+ ++ G + AHN + FD PF+A+ + +P
Sbjct: 86 RSFVGEERDILE-DFSYLVNQFFSGREHLLAAHNGKEFDFPFIARRMLILGLALPQKLQL 144
Query: 61 -----WR--FLDTLPLARELMKQNGSVSSKTSLQALREYFGIP-----LEGSAHRAM--- 105
W FLDTL L + G TSL L GIP + G+ RA+
Sbjct: 145 FGKKPWELGFLDTLDLWK-----FGDYKHYTSLNLLAYVLGIPSPKDDITGAEVRAVYYQ 199
Query: 106 -SDVNSLASILERIT 119
D+ +A ++ T
Sbjct: 200 EQDIARIAQYCQKDT 214
>gi|393776670|ref|ZP_10364964.1| DNA polymerase III PolC [Ralstonia sp. PBA]
gi|392716027|gb|EIZ03607.1| DNA polymerase III PolC [Ralstonia sp. PBA]
Length = 204
Score = 38.5 bits (88), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 47/106 (44%), Gaps = 12/106 (11%)
Query: 34 VAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREYF 93
VAHNA FD F E +R M+ P RF TL ++R L + L L
Sbjct: 87 VAHNAA-FDRKFWQAELARVDMHAPQ--RFACTLLVSRRLFPH----APDHKLGTLIRLL 139
Query: 94 GIPLEGSAHRAMSDVNSLASILERITSDLNFTLSDLLKTSFRANFD 139
+P G AHRA++D + + R+ ++ T RA+FD
Sbjct: 140 DLPQAGRAHRALADAEMASHLWVRMQEEICQTYR-----MPRADFD 180
>gi|424866610|ref|ZP_18290442.1| DNA polymerase III, epsilon subunit [Leptospirillum sp. Group II
'C75']
gi|124516571|gb|EAY58079.1| DNA polymerase III, epsilon subunit [Leptospirillum rubarum]
gi|387222699|gb|EIJ77118.1| DNA polymerase III, epsilon subunit [Leptospirillum sp. Group II
'C75']
Length = 265
Score = 38.5 bits (88), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
++ VAHN FDV + +E IP +DTLPL+R+++ + S L +
Sbjct: 83 SLLVAHNLA-FDVGMVNRELILAD-RIPLGNMGIDTLPLSRKMLPE----LSSYRLGEIA 136
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILERITSDLNFTLSD 128
++ GI L + HRAM D+ +L I+ + L T +
Sbjct: 137 KHMGI-LNENPHRAMGDLETLEKIVSNLLGSLPGTFDE 173
>gi|410479996|ref|YP_006767633.1| DNA polymerase III subunit epsilon [Leptospirillum ferriphilum
ML-04]
gi|406775248|gb|AFS54673.1| DNA polymerase III, epsilon subunit [Leptospirillum ferriphilum
ML-04]
Length = 265
Score = 38.5 bits (88), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
++ VAHN FDV + +E IP +DTLPL+R+++ + S L +
Sbjct: 83 SLLVAHNLA-FDVGMVNRELILAD-RIPLGNMGIDTLPLSRKMLPE----LSSYRLGEIA 136
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILERITSDLNFTLSD 128
++ GI L + HRAM D+ +L I+ + L T +
Sbjct: 137 KHMGI-LNENPHRAMGDLETLEKIVSNLLGSLPGTFDE 173
>gi|260906794|ref|ZP_05915116.1| hypothetical protein BlinB_15797 [Brevibacterium linens BL2]
Length = 581
Score = 38.5 bits (88), Expect = 0.89, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
A+ VAHNA FD+ F+ + + P LDT+ L+R ++ ++ + K L L
Sbjct: 111 AVLVAHNAP-FDIGFIRSACEKLDYHWPQP-TVLDTVTLSRRVVSRDEVRNHK--LSTLA 166
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILERI 118
+FG + HRA+SD + +L R+
Sbjct: 167 AHFGTEVSPD-HRALSDAKATGEVLHRV 193
>gi|184155667|ref|YP_001844007.1| helicase [Lactobacillus fermentum IFO 3956]
gi|183227011|dbj|BAG27527.1| helicase [Lactobacillus fermentum IFO 3956]
Length = 943
Score = 38.5 bits (88), Expect = 0.89, Method: Composition-based stats.
Identities = 36/111 (32%), Positives = 50/111 (45%), Gaps = 20/111 (18%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCS---MNIPDNWRFL 64
P ED+ P + ++ IFVAHN FD PFL EF R + IP +
Sbjct: 75 PLFEDVAPTLKSLLDD-------TIFVAHNVN-FDFPFLNAEFERAGEAPLTIPA----I 122
Query: 65 DTLPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASIL 115
DT+ L++ LM S L+ L Y I + H A+SD + A +L
Sbjct: 123 DTVTLSQILMPTAPSF----RLRDLTSYLAIDHD-QPHSAVSDAVATAHLL 168
>gi|260831380|ref|XP_002610637.1| hypothetical protein BRAFLDRAFT_202599 [Branchiostoma floridae]
gi|229296004|gb|EEN66647.1| hypothetical protein BRAFLDRAFT_202599 [Branchiostoma floridae]
Length = 220
Score = 38.5 bits (88), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 6/94 (6%)
Query: 27 PGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQN-----GSVS 81
P +A+ VAHN +FD P L E + + +P+ RF D+L RE + G
Sbjct: 101 PQPVAL-VAHNGLKFDFPLLKTELLKLNTRLPEGLRFCDSLLAFRETRESGRDGDEGETC 159
Query: 82 SKTSLQALREYFGIPLEGSAHRAMSDVNSLASIL 115
L++L + + AH A DV +L ++
Sbjct: 160 RLGLLESLYQRYVSQDPRCAHTAEDDVLALIQVV 193
>gi|395802464|ref|ZP_10481717.1| hypothetical protein FF52_11318 [Flavobacterium sp. F52]
gi|395435705|gb|EJG01646.1| hypothetical protein FF52_11318 [Flavobacterium sp. F52]
Length = 237
Score = 38.5 bits (88), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 24/107 (22%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDN--------WRF--LDTLPLARELMKQNGSVS 81
+ HN++ FD+PF+A+ M IPD W LDTL L + G
Sbjct: 112 LLCGHNSKEFDIPFIARRMIINQMPIPDKLNLFGKKPWEIPHLDTLELWK-----FGDYK 166
Query: 82 SKTSLQALREYFGIP-----LEGS----AHRAMSDVNSLASILERIT 119
TSL+ L + G+P ++GS + D++ + + E+ T
Sbjct: 167 HFTSLKLLTKILGVPSPKGDIDGSQVAHVYYVEKDIDRIITYCEKDT 213
>gi|227514853|ref|ZP_03944902.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
fermentum ATCC 14931]
gi|227086785|gb|EEI22097.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
fermentum ATCC 14931]
Length = 946
Score = 38.5 bits (88), Expect = 0.92, Method: Composition-based stats.
Identities = 36/111 (32%), Positives = 50/111 (45%), Gaps = 20/111 (18%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCS---MNIPDNWRFL 64
P ED+ P + ++ IFVAHN FD PFL EF R + IP +
Sbjct: 78 PLFEDVAPTLKSLLDD-------TIFVAHNVN-FDFPFLNAEFERAGEAPLTIPA----I 125
Query: 65 DTLPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASIL 115
DT+ L++ LM S L+ L Y I + H A+SD + A +L
Sbjct: 126 DTVTLSQILMPTAPSF----RLRDLTSYLAIDHD-QPHSAVSDAVATAHLL 171
>gi|330004210|ref|ZP_08304836.1| exonuclease [Klebsiella sp. MS 92-3]
gi|328536727|gb|EGF63048.1| exonuclease [Klebsiella sp. MS 92-3]
Length = 180
Score = 38.5 bits (88), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 9/95 (9%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTS-LQALR 90
++VAHN R+FD+PF+ K+ C + + PL + + S K LQ L
Sbjct: 88 VWVAHNGRQFDIPFITKQMRDCGVELIQR-------PLIDTMDARWACESGKIPRLQELA 140
Query: 91 EYFGIPL-EGSAHRAMSDVNSLASILERITSDLNF 124
G E AH A+ D + + + +D F
Sbjct: 141 VAMGFVYDEEKAHGALYDTDLMMQCFIKARNDYGF 175
>gi|260663059|ref|ZP_05863952.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus
fermentum 28-3-CHN]
gi|260552680|gb|EEX25680.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus
fermentum 28-3-CHN]
Length = 946
Score = 38.5 bits (88), Expect = 0.94, Method: Composition-based stats.
Identities = 36/111 (32%), Positives = 50/111 (45%), Gaps = 20/111 (18%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCS---MNIPDNWRFL 64
P ED+ P + ++ IFVAHN FD PFL EF R + IP +
Sbjct: 78 PLFEDVAPTLKSLLDD-------TIFVAHNVN-FDFPFLNAEFERAGEAPLTIPA----I 125
Query: 65 DTLPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASIL 115
DT+ L++ LM S L+ L Y I + H A+SD + A +L
Sbjct: 126 DTVTLSQILMPTAPSF----RLRDLTSYLAIDHD-QPHSAVSDAVATAHLL 171
>gi|404494282|ref|YP_006718388.1| 3'-to-5' exonuclease [Pelobacter carbinolicus DSM 2380]
gi|77546289|gb|ABA89851.1| 3'-to-5' exonuclease, putative [Pelobacter carbinolicus DSM 2380]
Length = 222
Score = 38.5 bits (88), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 43/93 (46%), Gaps = 7/93 (7%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
A VAHNA FD FL E R ++ F +L +AR + S L L
Sbjct: 99 APLVAHNAS-FDRRFLDAELQR--IDRCRRQEFACSLLVARRVYPD----SPNHKLATLV 151
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILERITSDLN 123
Y G+P +G HRA++D A + R+ +DL
Sbjct: 152 SYKGLPTDGCFHRALADAEMTAHLWLRMAADLQ 184
>gi|374996674|ref|YP_004972173.1| DNA polymerase III subunit alpha [Desulfosporosinus orientis DSM
765]
gi|357215040|gb|AET69658.1| DNA polymerase III, alpha chain [Desulfosporosinus orientis DSM
765]
Length = 1444
Score = 38.5 bits (88), Expect = 0.95, Method: Composition-based stats.
Identities = 36/124 (29%), Positives = 62/124 (50%), Gaps = 19/124 (15%)
Query: 10 MEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPL 69
+E + P ++ ++ E ++ VAHNA FD+ FL K +R + ++ +LDTL L
Sbjct: 486 IEQVFPKLLDFI-------EGSVLVAHNAE-FDIGFL-KHNARV-LGYDFDYTYLDTLSL 535
Query: 70 ARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASI----LERITSDLNFT 125
A+EL + L + + G +E AHRA+ DV++ + LE++ T
Sbjct: 536 AKELFPDYKTYK----LGRIAKNLGFKVE-VAHRALDDVDTTVKVFNVMLEKLKQRGAET 590
Query: 126 LSDL 129
L D+
Sbjct: 591 LEDI 594
>gi|297797093|ref|XP_002866431.1| exonuclease family protein [Arabidopsis lyrata subsp. lyrata]
gi|297312266|gb|EFH42690.1| exonuclease family protein [Arabidopsis lyrata subsp. lyrata]
Length = 484
Score = 38.5 bits (88), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
I+ HN +FD P +++ F+ + P+ +D+L L L ++ G + + L
Sbjct: 99 IWAGHNILKFDCPRISEAFAEIGRDPPEPKGTIDSLAL---LTQRFGRRAGDMKMATLAS 155
Query: 92 YFGIPLEGSAHRAMSDV 108
YFG L HR++ DV
Sbjct: 156 YFG--LGNQTHRSLDDV 170
>gi|353328383|ref|ZP_08970710.1| DNA polymerase III, epsilon subunit, partial [Wolbachia
endosymbiont wVitB of Nasonia vitripennis]
Length = 84
Score = 38.5 bits (88), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 8/65 (12%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
P ++ P +K++++ I V HNA+ FDV FL E + + + + R LDTL
Sbjct: 23 PLFSEIAPEFLKFISND-------ILVIHNAK-FDVEFLNMELGKLNAKLISSNRVLDTL 74
Query: 68 PLARE 72
PLAR+
Sbjct: 75 PLARK 79
>gi|398382520|ref|ZP_10540605.1| DNA polymerase III, epsilon subunit [Sphingobium sp. AP49]
gi|397726626|gb|EJK87059.1| DNA polymerase III, epsilon subunit [Sphingobium sp. AP49]
Length = 233
Score = 38.5 bits (88), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 42/96 (43%), Gaps = 7/96 (7%)
Query: 33 FVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREY 92
VAHNAR FD FL E C+ + R +DT+ +AR L +K SL AL
Sbjct: 86 LVAHNAR-FDFGFLNHELKLCARDGVSMDRMIDTVAIARTLHP-----GAKHSLDALCTR 139
Query: 93 FGIPLEGSA-HRAMSDVNSLASILERITSDLNFTLS 127
+GI H A+ D LA + +T L
Sbjct: 140 YGIDRSHRVKHGALLDAELLAQLYVELTGGRQIGLG 175
>gi|374317744|ref|YP_005064243.1| DNA polymerase III subunit alpha [Mycoplasma haemocanis str.
Illinois]
gi|363988810|gb|AEW45000.1| DNA polymerase III, PolC [Mycoplasma haemocanis str. Illinois]
Length = 1391
Score = 38.5 bits (88), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 8/114 (7%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
+I VAHN FD+PFL ++++ M P + +DTL L++ + S SL A+
Sbjct: 429 SILVAHNGIEFDLPFLNSKYTKLGME-PLSNPLIDTLRLSQTIFSDEKYKSH--SLGAIC 485
Query: 91 EYFGIPLE-GSAHRAMSDVNSLASI----LERITSDLNFTLSDLLKTSFRANFD 139
+ G+ + +AH A DV+ L LE +L L + LK + A F+
Sbjct: 486 KRIGVDYDLENAHSADYDVDVLWQAFLYSLEPKLKELGVDLENGLKEANDAVFN 539
>gi|315497200|ref|YP_004086004.1| DNA polymerase III subunit epsilon [Asticcacaulis excentricus CB
48]
gi|315415212|gb|ADU11853.1| DNA polymerase III, epsilon subunit [Asticcacaulis excentricus CB
48]
Length = 232
Score = 38.5 bits (88), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 50/108 (46%), Gaps = 14/108 (12%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
P+ DL I +V A +AHNA FD F+ E R ++ D R++DTL
Sbjct: 68 PKFADLAQAFIDFVGD-------APIIAHNAS-FDRGFINMELERLGLDPTDPDRWVDTL 119
Query: 68 PLARELMKQNGSVSSKTSLQALREYFGIPL-EGSAHRAMSDVNSLASI 114
LAR K G + SL AL + + I L E H A+ D LA +
Sbjct: 120 ELAR--YKFPGMAN---SLDALCKRYNISLAERDKHGALLDARLLAGV 162
>gi|194228403|ref|XP_001492131.2| PREDICTED: three prime repair exonuclease 2-like [Equus caballus]
Length = 269
Score = 38.5 bits (88), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 37/86 (43%), Gaps = 7/86 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQA--- 88
VAHN +D P L E R +P + LDTLP R L + + S +
Sbjct: 146 CLVAHNGFDYDFPLLCTELRRLGARLPRDTVCLDTLPALRGLDHAHSHGTRAQSCKGYSL 205
Query: 89 ---LREYFGIPLEGSAHRAMSDVNSL 111
R YF + +AH A DV++L
Sbjct: 206 GSLFRRYFQEEPK-AAHSAEGDVHTL 230
>gi|88855710|ref|ZP_01130373.1| DNA polymerase III subunit epsilon [marine actinobacterium
PHSC20C1]
gi|88815034|gb|EAR24893.1| DNA polymerase III subunit epsilon [marine actinobacterium
PHSC20C1]
Length = 417
Score = 38.5 bits (88), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 52/111 (46%), Gaps = 11/111 (9%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+ VAHNA FD+ FL E R + + ++ L T+ LARE + G +L
Sbjct: 86 VLVAHNAS-FDLKFLVAELERTAAWMSTDFVSLCTMQLAREYLPGAGR-----ALADCCA 139
Query: 92 YFGIPLEGSAHRAMSDVNSLASILER-ITSDLNFTLSDLLKTSFRANFDHS 141
I L+ AHRA +D + A +L I S+ N ++ + A DHS
Sbjct: 140 ALDIQLD-DAHRASADAFATAQLLAAYIESEAN---DEIWREHLDAALDHS 186
>gi|392424216|ref|YP_006465210.1| DNA polymerase III, alpha chain [Desulfosporosinus acidiphilus SJ4]
gi|391354179|gb|AFM39878.1| DNA polymerase III, alpha chain [Desulfosporosinus acidiphilus SJ4]
Length = 1444
Score = 38.5 bits (88), Expect = 1.0, Method: Composition-based stats.
Identities = 32/107 (29%), Positives = 56/107 (52%), Gaps = 12/107 (11%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
++ VAHNA FD+ FL +++ + ++ +LDTL LA+EL + L +
Sbjct: 500 SVLVAHNAE-FDIGFL--KYNAKDLGYDFDFTYLDTLSLAKELFPDFKTYK----LGRIA 552
Query: 91 EYFGIPLEGSAHRAMSDVNSLASI----LERITSDLNFTLSDLLKTS 133
+ GI +E AHRA+ DV++ + +E++ TL D+ + S
Sbjct: 553 KNLGIKVE-VAHRALDDVDTTVKVFNVMIEKLKQRGTETLMDIDRFS 598
>gi|219109276|pdb|3CG7|A Chain A, Crystal Structure Of Cell-Death Related Nuclease 4 (Crn-4)
gi|219109277|pdb|3CG7|B Chain B, Crystal Structure Of Cell-Death Related Nuclease 4 (Crn-4)
gi|219109290|pdb|3CM5|A Chain A, Crystal Structure Of Cell-Death Related Nuclease 4 (Crn-4)
Bound With Mn
gi|219109291|pdb|3CM5|B Chain B, Crystal Structure Of Cell-Death Related Nuclease 4 (Crn-4)
Bound With Mn
gi|219109292|pdb|3CM6|A Chain A, Crystal Structure Of Cell-Death Related Nuclease 4 (Crn-4)
Bound With Er
gi|219109293|pdb|3CM6|B Chain B, Crystal Structure Of Cell-Death Related Nuclease 4 (Crn-4)
Bound With Er
Length = 308
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 79 SVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILER-ITSDLNFTLSDLLKTS 133
+S+ T++ + EY+ +P G AH AM D ++A+IL+R I T+++LL
Sbjct: 166 ELSATTNIGKMNEYYDLPTIGRAHDAMDDCLNIATILQRMINMGAKVTVNELLTCC 221
>gi|17548214|ref|NP_508415.1| Protein CRN-4 [Caenorhabditis elegans]
gi|2496805|sp|Q10905.1|CRN4_CAEEL RecName: Full=Cell death-related nuclease 4; Flags: Precursor
gi|31747257|gb|AAP57300.1| cell death-related nuclease 4 [Caenorhabditis elegans]
gi|351065238|emb|CCD61184.1| Protein CRN-4 [Caenorhabditis elegans]
Length = 298
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 79 SVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILER-ITSDLNFTLSDLLKTS 133
+S+ T++ + EY+ +P G AH AM D ++A+IL+R I T+++LL
Sbjct: 156 ELSATTNIGKMNEYYDLPTIGRAHDAMDDCLNIATILQRMINMGAKVTVNELLTCC 211
>gi|357398629|ref|YP_004910554.1| DNA polymerase III subunit epsilon [Streptomyces cattleya NRRL 8057
= DSM 46488]
gi|386354667|ref|YP_006052913.1| DNA polymerase III subunit epsilon [Streptomyces cattleya NRRL 8057
= DSM 46488]
gi|337765038|emb|CCB73747.1| DNA polymerase III subunit epsilon [Streptomyces cattleya NRRL 8057
= DSM 46488]
gi|365805175|gb|AEW93391.1| DNA polymerase III subunit epsilon [Streptomyces cattleya NRRL 8057
= DSM 46488]
Length = 352
Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 7/81 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+ VAHNA FD LA+EF+R + P R L T+ LA+EL G L++L
Sbjct: 113 VLVAHNAV-FDWSMLAREFARAGRSAPVEHR-LCTIVLAKEL----GLPLPNHKLESLAA 166
Query: 92 YFGIPLEGSAHRAMSDVNSLA 112
++G+ ++ AH A+ D LA
Sbjct: 167 HYGV-VQRRAHHALDDARVLA 186
>gi|429755850|ref|ZP_19288474.1| hypothetical protein HMPREF9072_01204 [Capnocytophaga sp. oral
taxon 324 str. F0483]
gi|429172507|gb|EKY14063.1| hypothetical protein HMPREF9072_01204 [Capnocytophaga sp. oral
taxon 324 str. F0483]
Length = 239
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 56/134 (41%), Gaps = 25/134 (18%)
Query: 5 SYVPRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPD----- 59
S+V E L+ ++ V +F AHN + FD P+L++ + IP
Sbjct: 86 SFVGEEEVLLKDFVRLVEEHFSRAN-KLFCAHNGKEFDFPYLSRRMIINGIPIPQKLQLF 144
Query: 60 ---NWRF--LDTLPLARELMKQNGSVSSKTSLQALREYFGIP-----LEGSAHRAM---- 105
+W LDTL L + G TSL+ L GIP + GS R +
Sbjct: 145 GKKSWEIPHLDTLELWK-----FGDYKHFTSLKLLAHILGIPSPKDDINGSEVRDVFYNE 199
Query: 106 SDVNSLASILERIT 119
DV+ +A+ E+ T
Sbjct: 200 GDVDRIATYCEKDT 213
>gi|73667124|ref|YP_303140.1| DNA polymerase III subunit epsilon [Ehrlichia canis str. Jake]
gi|72394265|gb|AAZ68542.1| DNA polymerase III, epsilon subunit :DNA polymerase 3, epsilon
subunit [Ehrlichia canis str. Jake]
Length = 239
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 14/121 (11%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
P+ ++ +++VN+ ++ V HNA FD+ F+ E + + +++ +DTL
Sbjct: 74 PKFSEIADKFLEFVNN-------SVLVIHNAG-FDIKFIKMELDKIQKDYDSDFQVVDTL 125
Query: 68 PLARELMKQNGSVSSKTSLQALREYFGIPLEGSA-HRAMSDVNSLASILERITSDLNFTL 126
LAR K+ VSS +L AL F I L+ H A+ D L + ++ L +L
Sbjct: 126 ILAR---KKFPGVSS--TLDALCRRFNISLQDRKFHGALLDATLLGKVYVQLMGGLQRSL 180
Query: 127 S 127
Sbjct: 181 D 181
>gi|429752410|ref|ZP_19285273.1| hypothetical protein HMPREF9073_01240 [Capnocytophaga sp. oral
taxon 326 str. F0382]
gi|429176998|gb|EKY18346.1| hypothetical protein HMPREF9073_01240 [Capnocytophaga sp. oral
taxon 326 str. F0382]
Length = 239
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 14/102 (13%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLP-----LARELMKQNGSVSSKTSL 86
+F AHN + FD P++++ + IP + P L M + G TSL
Sbjct: 112 LFCAHNGKEFDFPYISRRMIINGIEIPQKLQLFGKKPWEIPHLDTMEMWKFGDYKHYTSL 171
Query: 87 QALREYFGIP-----LEGSAHRAM----SDVNSLASILERIT 119
+ L GIP ++GS R + D++ +A+ E+ T
Sbjct: 172 KLLAHILGIPSPKDDIDGSEVRNVFYNEGDIDRIATYCEKDT 213
>gi|126342108|ref|XP_001377513.1| PREDICTED: three prime repair exonuclease 2-like [Monodelphis
domestica]
Length = 241
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 40/91 (43%), Gaps = 8/91 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKT------S 85
VAHN +D P L E R ++P LDTLP R L K + + + S
Sbjct: 113 CLVAHNGFDYDFPLLRTELQRLGADLPGGTVCLDTLPALRGLDKAHHHSTRASHGKKSYS 172
Query: 86 LQAL-REYFGIPLEGSAHRAMSDVNSLASIL 115
L L R YF + +AH A DV +L +
Sbjct: 173 LGNLYRRYFDDEPQ-AAHSAEGDVYALVMVF 202
>gi|345849397|ref|ZP_08802409.1| DNA polymerase III subunit epsilon [Streptomyces zinciresistens
K42]
gi|345639129|gb|EGX60624.1| DNA polymerase III subunit epsilon [Streptomyces zinciresistens
K42]
Length = 220
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 63 FLDTLPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITS 120
FLDT+PLA+ L+ L L +FGIP HRA++DV A + R+ S
Sbjct: 132 FLDTIPLAKRLIPN----LPNYKLDTLLAHFGIPQPPDRHRALADVEVTAKVFLRLIS 185
>gi|338999487|ref|ZP_08638130.1| DNA polymerase III, epsilon subunit [Halomonas sp. TD01]
gi|338763636|gb|EGP18625.1| DNA polymerase III, epsilon subunit [Halomonas sp. TD01]
Length = 461
Score = 38.1 bits (87), Expect = 1.1, Method: Composition-based stats.
Identities = 30/75 (40%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
Query: 33 FVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREY 92
VAHNAR FD FL EF R + R TL ++R LM + K +LQAL +
Sbjct: 87 LVAHNAR-FDASFLRNEFKRADITYQPLLRC--TLRISRRLMPE----LPKHNLQALLAH 139
Query: 93 FGIPLEGSAHRAMSD 107
F I + HRA D
Sbjct: 140 FNIQ-QARQHRAEDD 153
>gi|225163449|ref|ZP_03725765.1| DNA-directed DNA polymerase [Diplosphaera colitermitum TAV2]
gi|224801949|gb|EEG20229.1| DNA-directed DNA polymerase [Diplosphaera colitermitum TAV2]
Length = 197
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 16/120 (13%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMN-IP-DNWRFLD 65
P D + ++V +GP VAHN RFD+ F+A+ C+++ +P RF+D
Sbjct: 67 PETSDALRAFARFVGD-VGP---TTLVAHNGHRFDMRFIAES---CTLHGLPMRPIRFID 119
Query: 66 TLPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHR---AMSDVNSLASILERITSDL 122
++ L+++L S +L + E GI + HR A +DV+ LA+ + R+ +L
Sbjct: 120 SIWLSKKLWP----AESLHNLDVIVERLGIETGITGHRRHDARADVHLLANAVRRMIQNL 175
>gi|241896118|ref|ZP_04783414.1| DNA-directed DNA polymerase III epsilon subunit [Weissella
paramesenteroides ATCC 33313]
gi|241870632|gb|EER74383.1| DNA-directed DNA polymerase III epsilon subunit [Weissella
paramesenteroides ATCC 33313]
Length = 970
Score = 38.1 bits (87), Expect = 1.1, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 7/91 (7%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
IFVAHN FD+PFL EF R MN N +DT+ L++ + + L L
Sbjct: 114 IFVAHNVN-FDLPFLNAEFQRIGMNTL-NLVAIDTVTLSQIVW----PTAPGFRLVDLTS 167
Query: 92 YFGIPLEGSAHRAMSDVNSLASILERITSDL 122
Y + + G H+A SD + A +L +I + L
Sbjct: 168 YLAL-VHGRPHQADSDALATAELLIQIFNRL 197
>gi|113970108|ref|YP_733901.1| DNA polymerase III subunit epsilon [Shewanella sp. MR-4]
gi|113884792|gb|ABI38844.1| DNA polymerase III, epsilon subunit [Shewanella sp. MR-4]
Length = 229
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 7/90 (7%)
Query: 33 FVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREY 92
VAHNA FD FL EF++ + P +F +L LAR L + + L L +
Sbjct: 112 LVAHNAA-FDQRFLDAEFAQIGHHYPG--QFGCSLLLARRLYPE----AINHQLATLVRH 164
Query: 93 FGIPLEGSAHRAMSDVNSLASILERITSDL 122
+P +G+ HRA++D + R+ +DL
Sbjct: 165 KQLPSDGTFHRALADAEMTGHLWLRMLADL 194
>gi|433462953|ref|ZP_20420521.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Halobacillus sp. BAB-2008]
gi|432188090|gb|ELK45308.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Halobacillus sp. BAB-2008]
Length = 932
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 48/110 (43%), Gaps = 15/110 (13%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
A VAHN FD+ FL EF RC + P + +DT+ AR ++ S L L
Sbjct: 85 AYIVAHNIE-FDLGFLNDEFKRCGLP-PLHNPIIDTVEFARLML----PTSPTFKLGQLA 138
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILERITSDLNFTLSDLLKTSFRANFDH 140
E G+ HRA+SD ++TSDL L ++ DH
Sbjct: 139 ERLGLG-HDRPHRALSDA--------QVTSDLLLYLLGQMEGLPEKTLDH 179
>gi|68248745|ref|YP_247857.1| DNA polymerase III subunit epsilon [Haemophilus influenzae
86-028NP]
gi|68056944|gb|AAX87197.1| DNA polymerase III, epsilon chain [Haemophilus influenzae 86-028NP]
Length = 255
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 54/116 (46%), Gaps = 16/116 (13%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIP--DNWRFLD 65
P +D+ + Y+N A + HNA FDV F+ EF + ++N+ D D
Sbjct: 76 PEFKDVAQDFLDYING-------AELLIHNAP-FDVGFMDYEFRKLNLNVKTDDICLVTD 127
Query: 66 TLPLARELMKQNGSVSSKTSLQALREYFGIP-LEGSAHRAMSDVNSLASILERITS 120
TL +AR++ + + +L AL E GI + + H A+ D LA + +T
Sbjct: 128 TLQMARQMY-----LGKRNNLDALCERLGIDNSKRTLHGALLDAEILADVYLMMTG 178
>gi|389755794|ref|ZP_10191311.1| DNA polymerase III subunit epsilon [Rhodanobacter sp. 115]
gi|388432187|gb|EIL89207.1| DNA polymerase III subunit epsilon [Rhodanobacter sp. 115]
Length = 208
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 56/120 (46%), Gaps = 13/120 (10%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
P ++ ++P ++ ++ GE A+ AHNA FD FL E R ++ P + + +L
Sbjct: 70 PSVKQVMPQLLDFI------GEDAL-AAHNAS-FDARFLLAESGRQGLS-PRHGGLICSL 120
Query: 68 PLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITSDLNFTLS 127
LAR L+ G S K L L I G+AHRA +D +L I L T S
Sbjct: 121 KLARRLLP--GRPSYK--LGELARSLNIRFNGAAHRAEADAEVTVHLLSHIGEHLCRTYS 176
>gi|395860665|ref|XP_003802630.1| PREDICTED: three prime repair exonuclease 2 [Otolemur garnettii]
Length = 315
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 52/120 (43%), Gaps = 9/120 (7%)
Query: 20 YVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGS 79
+++ + GP VAHN +D P L E R +P + LDTLP R L + +
Sbjct: 183 FLSRQAGP---ICLVAHNGFDYDFPLLCTELQRLGTYLPQDTVCLDTLPALRGLDRAHSH 239
Query: 80 VSSKT-----SLQALREYFGIPLEGSAHRAMSDVNSLASILERITSDLNFTLSDLLKTSF 134
+ SL +L + +AH A DV++L I ++L T +D S+
Sbjct: 240 GTRAQGRKSYSLGSLFHRYFQAEPSAAHSAEGDVHTLLLIFLHRAAEL-LTWADEQACSW 298
>gi|334345843|ref|YP_004554395.1| DNA polymerase III subunit epsilon [Sphingobium chlorophenolicum
L-1]
gi|334102465|gb|AEG49889.1| DNA polymerase III, epsilon subunit [Sphingobium chlorophenolicum
L-1]
Length = 230
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 42/96 (43%), Gaps = 7/96 (7%)
Query: 33 FVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREY 92
VAHNAR FD FL E C + R +DT+ +AR++ +K SL AL
Sbjct: 86 LVAHNAR-FDFGFLNHELKLCGLPEVSMDRMIDTVAIARQIHP-----GAKHSLDALCTR 139
Query: 93 FGIPLEGS-AHRAMSDVNSLASILERITSDLNFTLS 127
+GI H A+ D LA + +T L
Sbjct: 140 YGIDRSHRIKHGALLDAELLAQLYIELTGGRQIGLG 175
>gi|397171166|ref|ZP_10494575.1| DNA polymerase III, epsilon subunit [Alishewanella aestuarii B11]
gi|396087065|gb|EJI84666.1| DNA polymerase III, epsilon subunit [Alishewanella aestuarii B11]
Length = 749
Score = 38.1 bits (87), Expect = 1.2, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 12/92 (13%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRC--SMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQA 88
A+FVAHNA+ FD F+ EF+RC + ++P ++ M++ SL
Sbjct: 663 AVFVAHNAK-FDYGFIRSEFARCDITFDMPQLCTVVN--------MRRYYPGLQSYSLGK 713
Query: 89 LREYFGIPLEGSAHRAMSDVNSLASILERITS 120
L E F I L + HRA++D + + +L+ I +
Sbjct: 714 LCEEFEIKLN-NHHRALADATATSELLKLINA 744
>gi|268571701|ref|XP_002648789.1| Hypothetical protein CBG11812 [Caenorhabditis briggsae]
Length = 302
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 26/40 (65%)
Query: 79 SVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERI 118
S++ +++L+ + +F I EG AH AM DV LA + ++I
Sbjct: 156 SIAGRSNLEKMSNFFEIKFEGHAHNAMDDVKFLAQVAKKI 195
>gi|229159168|ref|ZP_04287203.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus ATCC
4342]
gi|228624302|gb|EEK81094.1| Exonuclease RNase T and DNA polymerase III [Bacillus cereus ATCC
4342]
Length = 273
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 50/101 (49%), Gaps = 8/101 (7%)
Query: 28 GEIAIFVAHNARRFDVPFLAKEFSRCSMNIP--DNWRFLDTLPLARELMKQNGSVSSKT- 84
GE +IFV D FL+ + + S+ P D R +D L + + + + T
Sbjct: 81 GESSIFVTWGKE--DYRFLSHDCTLHSVECPRMDKERRID---LQKFVFQAYEELFEHTP 135
Query: 85 SLQALREYFGIPLEGSAHRAMSDVNSLASILERITSDLNFT 125
SLQ+ E G+ EG HRA+SD + A+IL + S+ + T
Sbjct: 136 SLQSAVEQLGLTWEGKQHRALSDAENTANILLKAYSERDIT 176
>gi|34498206|ref|NP_902421.1| exonuclease [Chromobacterium violaceum ATCC 12472]
gi|34104060|gb|AAQ60420.1| probable exonuclease [Chromobacterium violaceum ATCC 12472]
Length = 207
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 48/112 (42%), Gaps = 16/112 (14%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
A AHNA FD F E ++ + F TL L+R L+ Q + L L
Sbjct: 85 APLAAHNAG-FDRKFWDYELGLLGLSRRQD--FACTLLLSRRLLPQ----APDHKLGTLA 137
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILERITSDLNFTLSDLLKTSFR-ANFDHS 141
+ G+P G AHRAM+D + + L L D L F A+ DH+
Sbjct: 138 RWAGLPDTGRAHRAMADAE--------MAAQLMLLLGDTLSRQFHLADIDHA 181
>gi|393779869|ref|ZP_10368102.1| hypothetical protein HMPREF1321_0309 [Capnocytophaga sp. oral taxon
412 str. F0487]
gi|392609513|gb|EIW92321.1| hypothetical protein HMPREF1321_0309 [Capnocytophaga sp. oral taxon
412 str. F0487]
Length = 239
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 55/134 (41%), Gaps = 25/134 (18%)
Query: 5 SYVPRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDN---- 60
S+V E L+ ++ V +F AHN + FD P+L++ + IP
Sbjct: 86 SFVGEEEVLLKDFVRLVEEHFSRAN-KLFCAHNGKEFDFPYLSRRMIINGIPIPQKLQLF 144
Query: 61 ----WRF--LDTLPLARELMKQNGSVSSKTSLQALREYFGIP-----LEGSAHRAM---- 105
W LDTL L + G TSL+ L GIP + GS R +
Sbjct: 145 GKKPWEIPHLDTLELWK-----FGDYKHFTSLKLLAHILGIPSPKDDINGSEVRDVFYNE 199
Query: 106 SDVNSLASILERIT 119
DV+ +A+ E+ T
Sbjct: 200 GDVDRIATYCEKDT 213
>gi|421859002|ref|ZP_16291251.1| DNA polymerase III [Paenibacillus popilliae ATCC 14706]
gi|410831521|dbj|GAC41688.1| DNA polymerase III [Paenibacillus popilliae ATCC 14706]
Length = 309
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 56/113 (49%), Gaps = 15/113 (13%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
P++E+ +P ++++ + V HNA FDV F+ +FS P + F+DTL
Sbjct: 87 PKIENALPNFLRFIGDD-------VVVIHNAH-FDVNFIY-DFSLTITGTPFSNNFVDTL 137
Query: 68 PLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITS 120
L+R+L + L+ L +YF + L HR++ D + + + I++
Sbjct: 138 RLSRKLFPE----LKNHRLKTLADYFELTLPN--HRSLDDCKAAIELYQFISN 184
>gi|421850223|ref|ZP_16283188.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter
pasteurianus NBRC 101655]
gi|421851681|ref|ZP_16284374.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter
pasteurianus subsp. pasteurianus LMG 1262 = NBRC 106471]
gi|371458949|dbj|GAB28391.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter
pasteurianus NBRC 101655]
gi|371480184|dbj|GAB29577.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter
pasteurianus subsp. pasteurianus LMG 1262 = NBRC 106471]
Length = 224
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 37/83 (44%), Gaps = 7/83 (8%)
Query: 33 FVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREY 92
+AHNAR FD F+ E R R +DTL +ARE SL AL
Sbjct: 87 LIAHNAR-FDFGFMNAELKRAGKKTLGLDRMVDTLDMARERFP-----GMPNSLDALCRR 140
Query: 93 FGIPLEG-SAHRAMSDVNSLASI 114
FG+ L + H A+ D LA +
Sbjct: 141 FGVDLSARTTHNALLDCKLLADV 163
>gi|256819920|ref|YP_003141199.1| hypothetical protein Coch_1083 [Capnocytophaga ochracea DSM 7271]
gi|256581503|gb|ACU92638.1| conserved hypothetical protein [Capnocytophaga ochracea DSM 7271]
Length = 239
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 55/134 (41%), Gaps = 25/134 (18%)
Query: 5 SYVPRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDN---- 60
S+V E L+ ++ V +F AHN + FD P+L++ + IP
Sbjct: 86 SFVGEEEVLLKDFVRLVEEHFSRAN-KLFCAHNGKEFDFPYLSRRMIINGIPIPQKLQLF 144
Query: 61 ----WRF--LDTLPLARELMKQNGSVSSKTSLQALREYFGIP-----LEGSAHRAM---- 105
W LDTL L + G TSL+ L GIP + GS R +
Sbjct: 145 GKKPWEIPHLDTLELWK-----FGDYKHFTSLKLLAHILGIPSPKDDINGSEVRDVFYNE 199
Query: 106 SDVNSLASILERIT 119
DV+ +A+ E+ T
Sbjct: 200 GDVDRIATYCEKDT 213
>gi|359690500|ref|ZP_09260501.1| putative exonuclease [Leptospira licerasiae serovar Varillal str.
MMD0835]
gi|418749999|ref|ZP_13306286.1| rnase H family [Leptospira licerasiae str. MMD4847]
gi|418759583|ref|ZP_13315762.1| hypothetical protein LEP1GSC185_0669 [Leptospira licerasiae serovar
Varillal str. VAR 010]
gi|384113335|gb|EID99600.1| hypothetical protein LEP1GSC185_0669 [Leptospira licerasiae serovar
Varillal str. VAR 010]
gi|404274153|gb|EJZ41472.1| rnase H family [Leptospira licerasiae str. MMD4847]
Length = 256
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+FV +N FDVPFL KEF R N R LD + + R L + G + +L R+
Sbjct: 137 VFVTYNGAAFDVPFLEKEFGRKFKN-----RHLDLMYILRSLGIKGGLKGCEKALGIKRD 191
Query: 92 YFGIPLEGSAHRAM 105
+P E + A+
Sbjct: 192 ---LPYEVNGADAV 202
>gi|420149455|ref|ZP_14656631.1| hypothetical protein HMPREF1320_1426 [Capnocytophaga sp. oral taxon
335 str. F0486]
gi|429747916|ref|ZP_19281150.1| hypothetical protein HMPREF9078_02308 [Capnocytophaga sp. oral
taxon 380 str. F0488]
gi|394753678|gb|EJF37185.1| hypothetical protein HMPREF1320_1426 [Capnocytophaga sp. oral taxon
335 str. F0486]
gi|429161999|gb|EKY04355.1| hypothetical protein HMPREF9078_02308 [Capnocytophaga sp. oral
taxon 380 str. F0488]
Length = 239
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 55/134 (41%), Gaps = 25/134 (18%)
Query: 5 SYVPRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDN---- 60
S+V E L+ ++ V +F AHN + FD P+L++ + IP
Sbjct: 86 SFVGEEEVLLKDFVRLVEEHFSRAN-KLFCAHNGKEFDFPYLSRRMIINGIPIPQKLQLF 144
Query: 61 ----WRF--LDTLPLARELMKQNGSVSSKTSLQALREYFGIP-----LEGSAHRAM---- 105
W LDTL L + G TSL+ L GIP + GS R +
Sbjct: 145 GKKPWEIPHLDTLELWK-----FGDYKHFTSLKLLAHILGIPSPKDDINGSEVRDVFYNE 199
Query: 106 SDVNSLASILERIT 119
DV+ +A+ E+ T
Sbjct: 200 GDVDRIATYCEKDT 213
>gi|258541965|ref|YP_003187398.1| DNA polymerase III subunit epsilon [Acetobacter pasteurianus IFO
3283-01]
gi|384041886|ref|YP_005480630.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter
pasteurianus IFO 3283-12]
gi|384050401|ref|YP_005477464.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter
pasteurianus IFO 3283-03]
gi|384053511|ref|YP_005486605.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter
pasteurianus IFO 3283-07]
gi|384056743|ref|YP_005489410.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter
pasteurianus IFO 3283-22]
gi|384059384|ref|YP_005498512.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter
pasteurianus IFO 3283-26]
gi|384062678|ref|YP_005483320.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter
pasteurianus IFO 3283-32]
gi|384118754|ref|YP_005501378.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter
pasteurianus IFO 3283-01-42C]
gi|256633043|dbj|BAH99018.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter
pasteurianus IFO 3283-01]
gi|256636100|dbj|BAI02069.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter
pasteurianus IFO 3283-03]
gi|256639155|dbj|BAI05117.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter
pasteurianus IFO 3283-07]
gi|256642209|dbj|BAI08164.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter
pasteurianus IFO 3283-22]
gi|256645264|dbj|BAI11212.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter
pasteurianus IFO 3283-26]
gi|256648319|dbj|BAI14260.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter
pasteurianus IFO 3283-32]
gi|256651372|dbj|BAI17306.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter
pasteurianus IFO 3283-01-42C]
gi|256654363|dbj|BAI20290.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter
pasteurianus IFO 3283-12]
Length = 224
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 37/83 (44%), Gaps = 7/83 (8%)
Query: 33 FVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREY 92
+AHNAR FD F+ E R R +DTL +ARE SL AL
Sbjct: 87 LIAHNAR-FDFGFMNAELKRAGKKTLGLDRMVDTLDMARERFP-----GMPNSLDALCRR 140
Query: 93 FGIPLEG-SAHRAMSDVNSLASI 114
FG+ L + H A+ D LA +
Sbjct: 141 FGVDLSARTTHNALLDCKLLADV 163
>gi|329114274|ref|ZP_08243036.1| DNA polymerase III subunit epsilon [Acetobacter pomorum DM001]
gi|326696350|gb|EGE48029.1| DNA polymerase III subunit epsilon [Acetobacter pomorum DM001]
Length = 224
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 37/83 (44%), Gaps = 7/83 (8%)
Query: 33 FVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREY 92
+AHNAR FD F+ E R R +DTL +ARE SL AL
Sbjct: 87 LIAHNAR-FDFGFMNAELKRAGKKTLGLDRMVDTLDMARERFP-----GMPNSLDALCRR 140
Query: 93 FGIPLEG-SAHRAMSDVNSLASI 114
FG+ L + H A+ D LA +
Sbjct: 141 FGVDLSARTTHNALLDCKLLADV 163
>gi|421771178|ref|ZP_16207839.1| DinG family ATP-dependent helicase YoaA [Lactobacillus rhamnosus
LRHMDP3]
gi|411186613|gb|EKS53737.1| DinG family ATP-dependent helicase YoaA [Lactobacillus rhamnosus
LRHMDP3]
Length = 933
Score = 38.1 bits (87), Expect = 1.3, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 9/90 (10%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPD-NWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
+FVAHN FD PFL EF R + +P +DT+ LA+ L+ + S L L
Sbjct: 88 VFVAHNVN-FDYPFLNAEFER--IGLPKLQLEAIDTVELAQVLLPEISSF----RLSDLT 140
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILERITS 120
+F I + + H+A SD S A +L ++ +
Sbjct: 141 THFAIQHD-NPHQADSDATSTAKLLLQLKA 169
>gi|199598401|ref|ZP_03211820.1| Rad3-related DNA helicase [Lactobacillus rhamnosus HN001]
gi|258508490|ref|YP_003171241.1| DNA polymerase III Rad3-related DNA helicase [Lactobacillus
rhamnosus GG]
gi|385828155|ref|YP_005865927.1| DNA helicase [Lactobacillus rhamnosus GG]
gi|199590720|gb|EDY98807.1| Rad3-related DNA helicase [Lactobacillus rhamnosus HN001]
gi|257148417|emb|CAR87390.1| DNA polymerase III, Rad3-related DNA helicase [Lactobacillus
rhamnosus GG]
gi|259649800|dbj|BAI41962.1| DNA helicase [Lactobacillus rhamnosus GG]
Length = 933
Score = 38.1 bits (87), Expect = 1.3, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 9/90 (10%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPD-NWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
+FVAHN FD PFL EF R + +P +DT+ LA+ L+ + S L L
Sbjct: 88 VFVAHNVN-FDYPFLNAEFER--IGLPKLQLEAIDTVELAQVLLPEISSF----RLSDLT 140
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILERITS 120
+F I + + H+A SD S A +L ++ +
Sbjct: 141 THFAIQHD-NPHQADSDATSTAKLLLQLKA 169
>gi|332982461|ref|YP_004463902.1| DNA polymerase III catalytic subunit, PolC type [Mahella
australiensis 50-1 BON]
gi|332700139|gb|AEE97080.1| DNA polymerase III catalytic subunit, PolC type [Mahella
australiensis 50-1 BON]
Length = 1427
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 8/93 (8%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
A+ VAHNA+ FD+ F+ + + ++ + LDTL LAR+L K L L
Sbjct: 494 AVLVAHNAQ-FDMGFIRQHGQKYNLKFAN--PVLDTLTLARQLFKG----LKHYKLDTLA 546
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILERITSDLN 123
+ I ++ + HRA+ D + A IL R L+
Sbjct: 547 HHLHIDMD-NHHRAVDDARTAAEILFRCMDKLS 578
>gi|229552292|ref|ZP_04441017.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
rhamnosus LMS2-1]
gi|258539701|ref|YP_003174200.1| DNA polymerase III Rad3-related DNA helicase [Lactobacillus
rhamnosus Lc 705]
gi|385835351|ref|YP_005873125.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Lactobacillus rhamnosus ATCC 8530]
gi|229314364|gb|EEN80337.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
rhamnosus LMS2-1]
gi|257151377|emb|CAR90349.1| DNA polymerase III, Rad3-related DNA helicase [Lactobacillus
rhamnosus Lc 705]
gi|355394842|gb|AER64272.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Lactobacillus rhamnosus ATCC 8530]
Length = 933
Score = 37.7 bits (86), Expect = 1.4, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 9/90 (10%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPD-NWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
+FVAHN FD PFL EF R + +P +DT+ LA+ L+ + S L L
Sbjct: 88 VFVAHNVN-FDYPFLNAEFER--IGLPKLQLEAIDTVELAQVLLPEISSF----RLSDLT 140
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILERITS 120
+F I + + H+A SD S A +L ++ +
Sbjct: 141 THFAIQHD-NPHQADSDATSTAKLLLQLKA 169
>gi|349575260|ref|ZP_08887181.1| DNA polymerase III, epsilon subunit [Neisseria shayeganii 871]
gi|348013268|gb|EGY52191.1| DNA polymerase III, epsilon subunit [Neisseria shayeganii 871]
Length = 457
Score = 37.7 bits (86), Expect = 1.4, Method: Composition-based stats.
Identities = 31/83 (37%), Positives = 44/83 (53%), Gaps = 8/83 (9%)
Query: 34 VAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREYF 93
VAHN+R FD FL EF+R P L T+ L+R+L ++ K +L+ + E
Sbjct: 102 VAHNSR-FDYTFLRHEFARAGH--PFAAPTLCTVQLSRQLYPRH----HKHNLETIIERH 154
Query: 94 GIPLEGSAHRAMSDVNSLASILE 116
GI HRA++DV +L LE
Sbjct: 155 GIRAP-QRHRALADVLALCDFLE 176
>gi|149376092|ref|ZP_01893858.1| hypothetical protein MDG893_03900 [Marinobacter algicola DG893]
gi|149359729|gb|EDM48187.1| hypothetical protein MDG893_03900 [Marinobacter algicola DG893]
Length = 483
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 15/109 (13%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
P ED+ ++ K + IFVAHNA RFD F+ EF R + + + L T+
Sbjct: 76 PVFEDIAEVLEKQLKD-------TIFVAHNA-RFDYGFIKAEFRRLGLLF--SAKVLCTV 125
Query: 68 PLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILE 116
L+R+L + ++ AL E G+ + HRA+ DV ++ + E
Sbjct: 126 KLSRKLYPG----FRRHNMDALIERHGLE-QVQRHRALGDVAAMMAFFE 169
>gi|344340272|ref|ZP_08771198.1| DNA-directed DNA polymerase [Thiocapsa marina 5811]
gi|343799930|gb|EGV17878.1| DNA-directed DNA polymerase [Thiocapsa marina 5811]
Length = 208
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 10/88 (11%)
Query: 33 FVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREY 92
VAHNA FD F E +R P F ++ ++R ++ Q + L L EY
Sbjct: 86 LVAHNAS-FDRKFWDAELARIGRRTPQA--FACSMLVSRRVLPQ----APNHKLGTLVEY 138
Query: 93 FGIPLEGSAHRAMSDVNSLASI---LER 117
G+P+ G HRA +D A + LER
Sbjct: 139 AGLPVTGRYHRAQADAEMAAHLTLYLER 166
>gi|330718588|ref|ZP_08313188.1| Rad3-related DNA helicase [Leuconostoc fallax KCTC 3537]
Length = 798
Score = 37.7 bits (86), Expect = 1.5, Method: Composition-based stats.
Identities = 29/110 (26%), Positives = 54/110 (49%), Gaps = 14/110 (12%)
Query: 6 YVPRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLD 65
+ P E++ P++ + ++ +AHN FD P+L +EF R ++ P + +D
Sbjct: 73 HAPYFEEIAPVIHTLLKD-------SVIIAHNVN-FDYPYLNEEFERAGLS-PLDIPAID 123
Query: 66 TLPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASIL 115
T+ L++ L+ + L L +Y I L +AHRA D ++ A +
Sbjct: 124 TVMLSQILL----PTAPGYRLVDLTQYLDIKLS-NAHRANEDAHATAELF 168
>gi|395491232|ref|ZP_10422811.1| DNA polymerase III subunit epsilon [Sphingomonas sp. PAMC 26617]
Length = 229
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 46/101 (45%), Gaps = 7/101 (6%)
Query: 33 FVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREY 92
VAHNA FD FL E RCS R +DT+ +AR + G +K +L AL
Sbjct: 86 LVAHNAS-FDFGFLNGELVRCSRTPIHLGRMIDTVAMAR--TRHPG---AKHNLDALCSR 139
Query: 93 FGIPLEG-SAHRAMSDVNSLASILERITSDLNFTLSDLLKT 132
+GI + H A+ D LA + +T L + +T
Sbjct: 140 YGIDRSHRTLHGALLDAQLLAQVYVELTGGRQIGLGLISET 180
>gi|433772240|ref|YP_007302707.1| DNA polymerase III, epsilon subunit [Mesorhizobium australicum
WSM2073]
gi|433664255|gb|AGB43331.1| DNA polymerase III, epsilon subunit [Mesorhizobium australicum
WSM2073]
Length = 242
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
Query: 29 EIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQA 88
E A VAHNA FD+ FL EF R DN +DTL LAR SL A
Sbjct: 82 EGAKLVAHNAT-FDIGFLNVEFGRLGHPPVDNGLVVDTLALARRKHPMG-----PNSLDA 135
Query: 89 LREYFGIP-LEGSAHRAMSDVNSLASI 114
L +GI + + H A+ D LA +
Sbjct: 136 LCRRYGIDNTKRTKHGALLDSELLAEV 162
>gi|406672638|ref|ZP_11079863.1| exonuclease, DNA polymerase III, epsilon subunit [Bergeyella
zoohelcum CCUG 30536]
gi|405587182|gb|EKB60910.1| exonuclease, DNA polymerase III, epsilon subunit [Bergeyella
zoohelcum CCUG 30536]
Length = 409
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 29 EIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQA 88
E V HN FD L +EF R + + LDT+PLA++L+ + SL
Sbjct: 79 EGTTLVGHNID-FDYRMLRQEFRRLGYDF--HIETLDTIPLAKQLIPD----AEGYSLGK 131
Query: 89 LREYFGIPLEGSAHRAMSDVNSLASILERITS 120
L + GIPL +AHRA +D + + + + S
Sbjct: 132 LVKSLGIPL-SNAHRAENDARATLELFKILIS 162
>gi|255037463|ref|YP_003088084.1| hypothetical protein Dfer_3714 [Dyadobacter fermentans DSM 18053]
gi|254950219|gb|ACT94919.1| conserved hypothetical protein [Dyadobacter fermentans DSM 18053]
Length = 244
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 36/88 (40%), Gaps = 11/88 (12%)
Query: 27 PGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQN-------GS 79
P E I AHN + FD PF+ + + IP + P EL+ Q+ G
Sbjct: 113 PAEQLILCAHNGKEFDFPFICRRMLIHRIEIPKALQISGKKPW--ELLHQDTMDLWKFGD 170
Query: 80 VSSKTSLQALREYFGIPLEGSAHRAMSD 107
S TSL L F IP GS + D
Sbjct: 171 YKSYTSLDLLAAVFDIP--GSKNEMSGD 196
>gi|148261748|ref|YP_001235875.1| DNA polymerase III subunit epsilon [Acidiphilium cryptum JF-5]
gi|146403429|gb|ABQ31956.1| DNA polymerase III, epsilon subunit [Acidiphilium cryptum JF-5]
Length = 225
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 39/89 (43%), Gaps = 7/89 (7%)
Query: 33 FVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREY 92
VAHNA FD FL EF+R D R +DTL LA++ SL AL
Sbjct: 87 LVAHNAP-FDFGFLDAEFARIGRAALDRARMIDTLALAKQRFP-----GMPNSLDALCRR 140
Query: 93 FGIPLEG-SAHRAMSDVNSLASILERITS 120
F I + H A+ D LA + +T
Sbjct: 141 FDIDFSARTTHNALLDCKLLAEVYVELTG 169
>gi|27904727|ref|NP_777853.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. Bp
(Baizongia pistaciae)]
gi|31340041|sp|Q89AN3.1|DPO3E_BUCBP RecName: Full=DNA polymerase III subunit epsilon
gi|27904124|gb|AAO26958.1| putative DNA polymerase III epsilon chain [Buchnera aphidicola str.
Bp (Baizongia pistaciae)]
Length = 245
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 10/91 (10%)
Query: 34 VAHNARRFDVPFLAKEFSRCSMN---IPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
+ HNA+ FDV F+ E + + + I D +DTLPLAR+L K SL AL
Sbjct: 95 IIHNAK-FDVGFINYELNMINSDKRKISDYCNVVDTLPLARQLFP-----GKKNSLDALC 148
Query: 91 EYFGIPLEG-SAHRAMSDVNSLASILERITS 120
+ I + H A+ D LA + +TS
Sbjct: 149 NRYKINVSHRDFHSALIDAKLLAKVYTFMTS 179
>gi|404251809|ref|ZP_10955777.1| DNA polymerase III subunit epsilon [Sphingomonas sp. PAMC 26621]
Length = 229
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 46/101 (45%), Gaps = 7/101 (6%)
Query: 33 FVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREY 92
VAHNA FD FL E RCS R +DT+ +AR + G +K +L AL
Sbjct: 86 LVAHNAS-FDFGFLNGELVRCSRTPIHLGRMIDTVAMAR--TRHPG---AKHNLDALCSR 139
Query: 93 FGIPLEG-SAHRAMSDVNSLASILERITSDLNFTLSDLLKT 132
+GI + H A+ D LA + +T L + +T
Sbjct: 140 YGIDRSHRTLHGALLDAQLLAQVYVELTGGRQIGLGLISET 180
>gi|261363839|ref|ZP_05976722.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
mucosa ATCC 25996]
gi|288568430|gb|EFC89990.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
mucosa ATCC 25996]
Length = 479
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 8/86 (9%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
A+ VAHN+R FD FL EF R ++ L T+ L+R L + K +L ++
Sbjct: 111 AVVVAHNSR-FDYTFLRHEFRRAGIDFAAP--ALCTVQLSRRLYPE----FYKHNLDSII 163
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILE 116
E I +E + HRAM+DV +L+ LE
Sbjct: 164 ERNAIAVE-NRHRAMTDVLALSDYLE 188
>gi|423315875|ref|ZP_17293780.1| exonuclease, DNA polymerase III, epsilon subunit [Bergeyella
zoohelcum ATCC 43767]
gi|405585591|gb|EKB59415.1| exonuclease, DNA polymerase III, epsilon subunit [Bergeyella
zoohelcum ATCC 43767]
Length = 409
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 29 EIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQA 88
E V HN FD L +EF R + + LDT+PLA++L+ + SL
Sbjct: 79 EGTTLVGHNID-FDYRMLRQEFRRLGYDF--HIETLDTIPLAKQLIPD----AEGYSLGK 131
Query: 89 LREYFGIPLEGSAHRAMSDVNSLASILERITS 120
L + GIPL +AHRA +D + + + + S
Sbjct: 132 LVKSLGIPL-SNAHRAENDARATLELFKILIS 162
>gi|126342238|ref|XP_001368108.1| PREDICTED: three prime repair exonuclease 2-like [Monodelphis
domestica]
Length = 241
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 40/91 (43%), Gaps = 8/91 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKT------S 85
VAHN +D P L E R ++P LDTLP R L K + + + S
Sbjct: 113 CLVAHNGFDYDFPLLRTELQRLGADLPGGTVCLDTLPALRGLDKVHHHSTRASHGKKSYS 172
Query: 86 LQAL-REYFGIPLEGSAHRAMSDVNSLASIL 115
L L R YF + +AH A DV +L +
Sbjct: 173 LGNLYRRYFDDEPQ-AAHSAEGDVYALVMVF 202
>gi|398986783|ref|ZP_10691701.1| DNA polymerase III, alpha subunit (gram-positive type) [Pseudomonas
sp. GM24]
gi|399011728|ref|ZP_10714058.1| DNA polymerase III, alpha subunit (gram-positive type) [Pseudomonas
sp. GM16]
gi|398117312|gb|EJM07064.1| DNA polymerase III, alpha subunit (gram-positive type) [Pseudomonas
sp. GM16]
gi|398151659|gb|EJM40201.1| DNA polymerase III, alpha subunit (gram-positive type) [Pseudomonas
sp. GM24]
Length = 201
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 47/106 (44%), Gaps = 10/106 (9%)
Query: 17 VIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQ 76
V++ VN +G VAHNA FD F E R N F +L LAR LM
Sbjct: 73 VMEEVNEFVG---CTPLVAHNAS-FDQKFWDFELGRIKRTRLQN--FACSLLLARRLM-- 124
Query: 77 NGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITSDL 122
+ L L + +P G AHRAM+D A+++ + +L
Sbjct: 125 --PAAPNHKLGTLTTFARLPHTGQAHRAMADAEMAANLMAHLADEL 168
>gi|373457083|ref|ZP_09548850.1| DNA polymerase III, epsilon subunit [Caldithrix abyssi DSM 13497]
gi|371718747|gb|EHO40518.1| DNA polymerase III, epsilon subunit [Caldithrix abyssi DSM 13497]
Length = 993
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 14/108 (12%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
P ++ ++P ++++ L +AHN FD L + ++ P N R+ D+L
Sbjct: 667 PTIDKVLPDFLQFIGEDL-------LIAHNGYAFDFIILDRYIRELNLKKPRNVRY-DSL 718
Query: 68 PLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASIL 115
+AR L + K S+ AL + + G+ HRA+ DV L I
Sbjct: 719 IMARNLFP-----NEKNSIDALAYRYKLD-TGTRHRALDDVKVLNLIF 760
>gi|339635153|ref|YP_004726794.1| ATP-dependent helicase DinG [Weissella koreensis KACC 15510]
gi|338854949|gb|AEJ24115.1| ATP-dependent helicase DinG [Weissella koreensis KACC 15510]
Length = 949
Score = 37.7 bits (86), Expect = 1.6, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+FVAHN FD+PFL EF R + N LDT+ LA+ L +S L L +
Sbjct: 87 VFVAHNVN-FDLPFLNAEFERVGLTPLTNLA-LDTVALAQILW----PTASSYRLGDLTQ 140
Query: 92 YFGIPLEGSAHRAMSDVNSLASIL 115
GI + HRA SD + +L
Sbjct: 141 QLGID-HLNPHRADSDAKATGELL 163
>gi|291222534|ref|XP_002731271.1| PREDICTED: hypothetical protein [Saccoglossus kowalevskii]
Length = 954
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 16/113 (14%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWR-----FLDTLPLARELMKQNGSVSSKTS 85
++ VAHN + FD L R + D + F DTL + RE++ S S +
Sbjct: 578 SVLVAHNCKNFDARILVSSVQR--YGLLDKLKHKHCCFSDTLSVFREILPPRSSYSEE-- 633
Query: 86 LQALREYFGIPLEGSAHRAMSDVNSLASILERITSDLNFTLSDLLKTSFRANF 138
+ +Y + E SAH A DV+ +L+++ N +S + K SF +F
Sbjct: 634 -NLVNDY--LHTEYSAHNAKHDVH----MLQQLIGKCNVDISHISKHSFSVDF 679
>gi|374723782|gb|EHR75862.1| DNA polymerase III subunit epsilon [uncultured marine group II
euryarchaeote]
Length = 298
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 22/45 (48%)
Query: 29 EIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLAREL 73
E AI V HN R+FD+ L E+ R P +DT L R L
Sbjct: 113 EGAIIVGHNVRKFDMAMLESEYLRLGKRTPKPKAIMDTYELVRRL 157
>gi|420161148|ref|ZP_14667919.1| hypothetical protein JC2156_15570 [Weissella koreensis KCTC 3621]
gi|394745898|gb|EJF34716.1| hypothetical protein JC2156_15570 [Weissella koreensis KCTC 3621]
Length = 949
Score = 37.7 bits (86), Expect = 1.6, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+FVAHN FD+PFL EF R + N LDT+ LA+ L +S L L +
Sbjct: 87 VFVAHNVN-FDLPFLNAEFERVGLTPLTNLA-LDTVALAQILW----PTASSYRLGDLTQ 140
Query: 92 YFGIPLEGSAHRAMSDVNSLASIL 115
GI + HRA SD + +L
Sbjct: 141 QLGID-HLNPHRADSDAKATGELL 163
>gi|321476304|gb|EFX87265.1| hypothetical protein DAPPUDRAFT_312568 [Daphnia pulex]
Length = 219
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCS--MNIPDNWRFLD 65
P ED+ IV+ ++N P VAHN +FD P L EFSR M+ P + +D
Sbjct: 84 PFDEDVGNIVLSFLNRLKKP---VCLVAHNGFKFDFPILLAEFSRLYGIMDFPSDIFSVD 140
Query: 66 TLPLARELMKQNGS 79
+L + R L + S
Sbjct: 141 SLAIFRNLSQSPSS 154
>gi|297842185|ref|XP_002888974.1| exonuclease family protein [Arabidopsis lyrata subsp. lyrata]
gi|297334815|gb|EFH65233.1| exonuclease family protein [Arabidopsis lyrata subsp. lyrata]
Length = 506
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
I+ HN +RFD + F+ + P+ +D+L L L ++ G + + +L
Sbjct: 99 IWAGHNIKRFDCVRIRDAFAEIGLCPPEPKATIDSLSL---LSQKFGKRAGDMKMASLAT 155
Query: 92 YFGIPLEGSAHRAMSDV 108
YFG L AHR++ DV
Sbjct: 156 YFG--LGDQAHRSLDDV 170
>gi|260583276|ref|ZP_05851052.1| DNA polymerase III, epsilon subunit [Haemophilus influenzae NT127]
gi|260093683|gb|EEW77595.1| DNA polymerase III, epsilon subunit [Haemophilus influenzae NT127]
Length = 256
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 54/116 (46%), Gaps = 16/116 (13%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIP--DNWRFLD 65
P +D+ + Y+N A + HNA FDV F+ EF + ++N+ D D
Sbjct: 76 PEFKDVAQDFLDYING-------AELLIHNAP-FDVGFMDYEFRKLNLNVKTDDICLVTD 127
Query: 66 TLPLARELMKQNGSVSSKTSLQALREYFGIP-LEGSAHRAMSDVNSLASILERITS 120
TL +AR++ +++L AL E GI + + H A+ D LA + +T
Sbjct: 128 TLQMARQMYP-----GKRSNLDALCERLGIDNSKRTLHGALLDAEILADVYLMMTG 178
>gi|228992546|ref|ZP_04152473.1| DNA polymerase III polC-type [Bacillus pseudomycoides DSM 12442]
gi|228767180|gb|EEM15816.1| DNA polymerase III polC-type [Bacillus pseudomycoides DSM 12442]
Length = 1433
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 47/104 (45%), Gaps = 10/104 (9%)
Query: 33 FVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREY 92
VAHNA FD+ FL F +C ++ P N +DTL LAR L + L + +
Sbjct: 499 LVAHNAS-FDMGFLNVGFKKCGLDKPKN-PVIDTLELARFLFPE----MKNHRLNTMCKK 552
Query: 93 FGIPLEGSAHRAMSDVNSLASILERITSDL---NFTLSDLLKTS 133
I L HRA+ D + +L ++ D+ F D L S
Sbjct: 553 LDIELT-QHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQLNDS 595
>gi|189485715|ref|YP_001956656.1| DNA polymerase III epsilon subunit [uncultured Termite group 1
bacterium phylotype Rs-D17]
gi|170287674|dbj|BAG14195.1| DNA polymerase III epsilon subunit [uncultured Termite group 1
bacterium phylotype Rs-D17]
Length = 198
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 50/92 (54%), Gaps = 8/92 (8%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
++ V HNA FD+ F+ +E + + N R++DTL LAR+ + + L +
Sbjct: 97 SVVVCHNAP-FDLLFVYRELYLAGVPV-KNIRYIDTLKLARQYFSFDSN-----KLGNIA 149
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILERITSDL 122
+ GI E HRAM+DV ++ S+ + I +++
Sbjct: 150 DAIGIEAE-LRHRAMADVLTMFSVAKYIFANM 180
>gi|410459344|ref|ZP_11313095.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Bacillus azotoformans LMG 9581]
gi|409930320|gb|EKN67321.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Bacillus azotoformans LMG 9581]
Length = 926
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 53/121 (43%), Gaps = 15/121 (12%)
Query: 29 EIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWR---FLDTLPLARELMKQNGSVSSKTS 85
E + FVAHN FD+ FL EF +C WR LDT+ L+R L S
Sbjct: 82 EDSYFVAHNVP-FDIAFLKAEFRKCGA----KWRNCPTLDTVELSRLLFPTLNSY----K 132
Query: 86 LQALREYFGIPLEGSAHRAMSDVNSLASILERITSDL-NFTLSDLLK-TSFRANFDHSKK 143
L L I HRA SD + A +L + L + L L K S+ A+F S K
Sbjct: 133 LNQLATELSIE-HDQPHRADSDAEATAQLLVNLLIKLKSLPLVTLKKMQSYAASFQSSLK 191
Query: 144 N 144
N
Sbjct: 192 N 192
>gi|228998594|ref|ZP_04158181.1| DNA polymerase III polC-type [Bacillus mycoides Rock3-17]
gi|228761062|gb|EEM10021.1| DNA polymerase III polC-type [Bacillus mycoides Rock3-17]
Length = 1433
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 47/104 (45%), Gaps = 10/104 (9%)
Query: 33 FVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREY 92
VAHNA FD+ FL F +C ++ P N +DTL LAR L + L + +
Sbjct: 499 LVAHNAS-FDMGFLNVGFKKCGLDKPKN-PVIDTLELARFLFPE----MKNHRLNTMCKK 552
Query: 93 FGIPLEGSAHRAMSDVNSLASILERITSDL---NFTLSDLLKTS 133
I L HRA+ D + +L ++ D+ F D L S
Sbjct: 553 LDIELT-QHHRAIYDTEATGYLLVKMLKDVIEKGFEYHDQLNDS 595
>gi|398964626|ref|ZP_10680403.1| DNA polymerase III, alpha subunit (gram-positive type) [Pseudomonas
sp. GM30]
gi|398148012|gb|EJM36700.1| DNA polymerase III, alpha subunit (gram-positive type) [Pseudomonas
sp. GM30]
Length = 201
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 47/106 (44%), Gaps = 10/106 (9%)
Query: 17 VIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQ 76
V++ VN +G VAHNA FD F E R N F +L LAR LM
Sbjct: 73 VMEEVNEFVG---CTPLVAHNAS-FDQKFWDFELGRIKRTRLQN--FACSLLLARRLM-- 124
Query: 77 NGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITSDL 122
+ L L + +P G AHRAM+D A+++ + +L
Sbjct: 125 --PAAPNHKLGTLTTFARLPHTGQAHRAMADAEMAANLMAHLADEL 168
>gi|402573894|ref|YP_006623237.1| DNA polymerase III subunit alpha [Desulfosporosinus meridiei DSM
13257]
gi|402255091|gb|AFQ45366.1| DNA polymerase III, alpha chain [Desulfosporosinus meridiei DSM
13257]
Length = 1443
Score = 37.7 bits (86), Expect = 1.7, Method: Composition-based stats.
Identities = 34/105 (32%), Positives = 54/105 (51%), Gaps = 12/105 (11%)
Query: 29 EIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQA 88
E ++ VAHNA FD+ FL K +R + ++ +LDTL LA+EL + L
Sbjct: 497 EGSVLVAHNAE-FDIGFL-KHNARV-LGYSFDYTYLDTLSLAKELFPDFKTY----KLGR 549
Query: 89 LREYFGIPLEGSAHRAMSDVNSLASI----LERITSDLNFTLSDL 129
+ + G +E AHRA+ DV++ + LE++ TL D+
Sbjct: 550 IAKNLGFKVE-VAHRALDDVDTTVKVFKVMLEKLKQRGAETLEDI 593
>gi|229086370|ref|ZP_04218547.1| DNA polymerase III polC-type [Bacillus cereus Rock3-44]
gi|228696982|gb|EEL49790.1| DNA polymerase III polC-type [Bacillus cereus Rock3-44]
Length = 1433
Score = 37.7 bits (86), Expect = 1.7, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 7/90 (7%)
Query: 33 FVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREY 92
VAHNA FD+ FL F +C ++ P N +DTL LAR L + L + +
Sbjct: 499 LVAHNAS-FDMGFLNVGFKKCGLDKPKN-PVIDTLELARFLFPE----MKNHRLNTMCKK 552
Query: 93 FGIPLEGSAHRAMSDVNSLASILERITSDL 122
I L HRA+ D + +L ++ D+
Sbjct: 553 LDIELT-QHHRAIYDTEATGYLLVKMLKDV 581
>gi|410099905|ref|ZP_11294872.1| exonuclease, DNA polymerase III, epsilon subunit [Parabacteroides
goldsteinii CL02T12C30]
gi|409217246|gb|EKN10224.1| exonuclease, DNA polymerase III, epsilon subunit [Parabacteroides
goldsteinii CL02T12C30]
Length = 257
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 14/117 (11%)
Query: 33 FVAHNARRFDVPFLAKEFSRCSMNIPDNWR-FLDTLPLARELMKQNGSVSSKTSLQALRE 91
+N+ RFD+P LA+EF R ++I N R F+D + ++ +T A +
Sbjct: 90 LAGYNSNRFDIPLLAEEFLRAGVDIDLNKRKFVDVQTIFHKM-------EQRTLSAAYKF 142
Query: 92 YFGIPLEGSAHRAMSDVNS----LASILERITSDLNFTLSDLLK-TSFRANFDHSKK 143
Y LE +AH A +D + L + L+R DL + L K +SF N D + +
Sbjct: 143 YCDKSLE-NAHTAEADTMATYEILKAQLDRYPDDLQNDIDFLSKYSSFTNNVDFAGR 198
>gi|297305033|ref|XP_001083188.2| PREDICTED: three prime repair exonuclease 2-like [Macaca mulatta]
Length = 278
Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 10/105 (9%)
Query: 13 LIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARE 72
++ ++ +++ + GP VAHN +D P L E R +P + LDTLP R
Sbjct: 139 VVRMLQAFLSRQAGP---ICLVAHNGFDYDFPLLCAELRRLGARLPRDTVCLDTLPALRG 195
Query: 73 LMKQNGSVSSKTSLQA------LREYFGIPLEGSAHRAMSDVNSL 111
L + + + Q YF +AH A DV++L
Sbjct: 196 LDRAHSHGTRARGRQGYSLGSLFHRYFQAE-PSAAHSAEGDVHTL 239
>gi|148827278|ref|YP_001292031.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittGG]
gi|148718520|gb|ABQ99647.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittGG]
Length = 256
Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 54/116 (46%), Gaps = 16/116 (13%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIP--DNWRFLD 65
P +D+ + Y+N A + HNA FDV F+ EF + ++N+ D D
Sbjct: 76 PEFKDVAQDFLDYING-------AELLIHNAP-FDVGFMDYEFRKLNLNVKTDDICLVTD 127
Query: 66 TLPLARELMKQNGSVSSKTSLQALREYFGIP-LEGSAHRAMSDVNSLASILERITS 120
TL +AR++ +++L AL E GI + + H A+ D LA + +T
Sbjct: 128 TLQMARQMYP-----GKRSNLDALCERLGIDNSKRTLHGALLDAEILADVYLMMTG 178
>gi|405975996|gb|EKC40521.1| hypothetical protein CGI_10022960 [Crassostrea gigas]
Length = 418
Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 23/111 (20%)
Query: 14 IPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSM------NIPDNWRFLDTL 67
+ ++I YV+ R P I V HN FD+P L+K+ + ++ D LDTL
Sbjct: 281 LALLIDYVSKRENP----ILVGHNVLSFDIPILSKKLQEHGLLQEFLRHVSD---CLDTL 333
Query: 68 PLARELMKQN--GSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILE 116
LAR+L + G+ T +Q L G +++A+ + + ++ E
Sbjct: 334 RLARKLFNKETVGNYKQPTLVQVLL--------GKSYQALDGLTDVKNLYE 376
>gi|341613849|ref|ZP_08700718.1| DNA polymerase III, epsilon subunit [Citromicrobium sp. JLT1363]
Length = 233
Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 41/96 (42%), Gaps = 7/96 (7%)
Query: 33 FVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREY 92
VAHNA FD FL E RCS R +DTL LAR K G K SL AL
Sbjct: 86 LVAHNAG-FDFGFLNAELERCSREAICLSRKIDTLELARR--KHPG---GKHSLDALCTR 139
Query: 93 FGIPLEGSA-HRAMSDVNSLASILERITSDLNFTLS 127
+G+ H A+ D LA + +T +
Sbjct: 140 YGVDRSHRVFHGALLDAELLAQVYIELTGGRQIAMG 175
>gi|325103674|ref|YP_004273328.1| 3'-5' exonuclease [Pedobacter saltans DSM 12145]
gi|324972522|gb|ADY51506.1| 3'-5' exonuclease, PolB [Pedobacter saltans DSM 12145]
Length = 232
Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 23/120 (19%)
Query: 16 IVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDN-------WR--FLDT 66
I++K+++ + AHN + FD P+L + + IP W LDT
Sbjct: 92 ILVKFISLLEKQSSEVLLCAHNGKEFDFPYLCRRILINQLPIPKTLNISKKPWENNHLDT 151
Query: 67 LPLARELMKQNGSVSSKTSLQALREYFGIP-----LEGS----AHRAMSDVNSLASILER 117
L L + G + TSL+ L FGIP L+GS + ++++ + S E+
Sbjct: 152 LELWK-----FGDYKNYTSLELLSSVFGIPSPKDDLDGSQVACVYYKENNISKIVSYCEK 206
>gi|348589647|ref|YP_004874109.1| DNA polymerase III subunit epsilon [Taylorella asinigenitalis MCE3]
gi|347973551|gb|AEP36086.1| DNA polymerase III epsilon subunit [Taylorella asinigenitalis MCE3]
Length = 238
Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 57/129 (44%), Gaps = 19/129 (14%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNW--RFLD 65
P D +I+Y++ A + HNA FD+ FL EFS C + D++ F+D
Sbjct: 68 PLFADKADQIIEYLSG-------AQLIIHNAA-FDMGFLNTEFSLCGKPLLDSFINGFID 119
Query: 66 TLPLARELMKQNGSVSSKTSLQAL-----REYFGIPLEGSAHRAMSDVNSLASILERITS 120
+ ARE NG S+ +L L E F + H A+ D LA + ++ S
Sbjct: 120 SRNYARE----NGFASAVITLDKLYKDLVDETFDKSKDRKIHGALLDATMLAKVFIKLNS 175
Query: 121 DLNFTLSDL 129
N S++
Sbjct: 176 GQNDLFSEV 184
>gi|268578591|ref|XP_002644278.1| Hypothetical protein CBG14050 [Caenorhabditis briggsae]
Length = 212
Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 27/43 (62%)
Query: 76 QNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERI 118
Q + K++++ + Y GI L G AH A+SD ++A+I ++I
Sbjct: 149 QKNKLVGKSNIEKMSSYLGIELSGKAHDALSDCLNIAAITQKI 191
>gi|402911813|ref|XP_003918499.1| PREDICTED: three prime repair exonuclease 2 [Papio anubis]
Length = 275
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 10/105 (9%)
Query: 13 LIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARE 72
++ ++ +++ + GP VAHN +D P L E R +P + LDTLP R
Sbjct: 136 VVRMLQAFLSRQAGP---ICLVAHNGFDYDFPLLCAELRRLGARLPRDTVCLDTLPALRG 192
Query: 73 LMKQNGSVSSKTSLQA------LREYFGIPLEGSAHRAMSDVNSL 111
L + + + Q YF +AH A DV++L
Sbjct: 193 LDRAHSHGTRARGRQGYSLGSLFHRYFQAE-PSAAHSAEGDVHTL 236
>gi|358635348|dbj|BAL22645.1| DNA polymerase III, epsilon subunit [Azoarcus sp. KH32C]
Length = 466
Score = 37.4 bits (85), Expect = 1.9, Method: Composition-based stats.
Identities = 39/124 (31%), Positives = 56/124 (45%), Gaps = 19/124 (15%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIA----------IFVAHNARRFDVPFLAKEFSRCSMNI 57
P ++ LI I + V + G GE+A +FVAHNA RFD F+ EF R
Sbjct: 53 PLIQRLIGITDEMVAAAPGFGEVADELRRRLDGAVFVAHNA-RFDYGFMRSEFGRIGQTF 111
Query: 58 PDNWRFLDTLPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILER 117
+ L T+ L+R L ++ + L AL E + + HRAM D L R
Sbjct: 112 --DAPVLCTVKLSRALYPEH----HRHGLDALIERHRF-VCSARHRAMGDTEVLWQ-FSR 163
Query: 118 ITSD 121
+ +D
Sbjct: 164 LVTD 167
>gi|157103173|ref|XP_001647854.1| three prime repair exonuclease 1, putative [Aedes aegypti]
gi|108884686|gb|EAT48911.1| AAEL000049-PA [Aedes aegypti]
Length = 320
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLAREL 73
VAHN RFD L KE + +PD+ +D+LPL + L
Sbjct: 105 CLVAHNGNRFDFVILKKELESLNAQLPDDTYCVDSLPLFQAL 146
>gi|355705265|gb|EHH31190.1| hypothetical protein EGK_21071, partial [Macaca mulatta]
gi|355757801|gb|EHH61326.1| hypothetical protein EGM_19314, partial [Macaca fascicularis]
Length = 276
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 10/105 (9%)
Query: 13 LIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARE 72
++ ++ +++ + GP VAHN +D P L E R +P + LDTLP R
Sbjct: 137 VVRMLQAFLSRQAGP---ICLVAHNGFDYDFPLLCAELRRLGARLPRDTVCLDTLPALRG 193
Query: 73 LMKQNGSVSSKTSLQA------LREYFGIPLEGSAHRAMSDVNSL 111
L + + + Q YF +AH A DV++L
Sbjct: 194 LDRAHSHGTRARGRQGYSLGSLFHRYFQAE-PSAAHSAEGDVHTL 237
>gi|375133019|ref|YP_005049427.1| DNA polymerase III subunit alpha [Vibrio furnissii NCTC 11218]
gi|315182194|gb|ADT89107.1| DNA polymerase III, alpha subunit [Vibrio furnissii NCTC 11218]
Length = 184
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 14/115 (12%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
PR E+++ ++ VAHNA FD FL EF R + P +F ++
Sbjct: 51 PRCEEVMAEFAHFIGD-------TPLVAHNAS-FDKRFLDAEFDRIGVRYPG--QFACSM 100
Query: 68 PLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITSDL 122
+AR L+ QN L ++ I +G+ HRA++D AS+ + +DL
Sbjct: 101 LIARRLI-QNAPTHKLGDLVRFKQ---IENDGTFHRALADSQMTASLWMLMVNDL 151
>gi|321309654|ref|YP_004191983.1| DNA polymerase III subunit alpha [Mycoplasma haemofelis str.
Langford 1]
gi|319801498|emb|CBY92144.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
haemofelis str. Langford 1]
Length = 1393
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 54/114 (47%), Gaps = 8/114 (7%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
++ VAHN FD PFL ++ + M P + +DTL L++ + + S SL A+
Sbjct: 431 SVLVAHNGIEFDFPFLNAKYIKLGME-PLSNPLIDTLRLSQTIFSEEKYKSH--SLGAIC 487
Query: 91 EYFGIPLE-GSAHRAMSDVNSLASI----LERITSDLNFTLSDLLKTSFRANFD 139
+ G+ + AH A DV+ L + LE + L D LK + A F+
Sbjct: 488 KRVGVEYDLEHAHSADFDVDVLWQVFMYSLEPKLKEWGVNLEDGLKEANDAVFN 541
>gi|399117274|emb|CCG20088.1| DNA polymerase III, epsilon subunit [Taylorella asinigenitalis
14/45]
Length = 238
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 57/129 (44%), Gaps = 19/129 (14%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNW--RFLD 65
P D +I+Y++ A + HNA FD+ FL EFS C + D++ F+D
Sbjct: 68 PLFADKADQIIEYLSG-------AQLIIHNAA-FDMGFLNTEFSLCGKPLLDSFINGFID 119
Query: 66 TLPLARELMKQNGSVSSKTSLQAL-----REYFGIPLEGSAHRAMSDVNSLASILERITS 120
+ ARE NG S+ +L L E F + H A+ D LA + ++ S
Sbjct: 120 SRNYARE----NGFASAVITLDKLYKDLVDETFDKSKDRKIHGALLDATMLAKVFIKLNS 175
Query: 121 DLNFTLSDL 129
N S++
Sbjct: 176 GQNDLFSEV 184
>gi|398854886|ref|ZP_10611408.1| DNA polymerase III, alpha subunit (gram-positive type) [Pseudomonas
sp. GM80]
gi|398233657|gb|EJN19573.1| DNA polymerase III, alpha subunit (gram-positive type) [Pseudomonas
sp. GM80]
Length = 201
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 46/106 (43%), Gaps = 10/106 (9%)
Query: 17 VIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQ 76
V+ VN +G VAHNA FD F E R N F +L LAR LM
Sbjct: 73 VMNEVNEFVG---CTPLVAHNAS-FDQKFWDFELGRIKRTRLQN--FACSLLLARRLM-- 124
Query: 77 NGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITSDL 122
+ L L + +P G AHRAM+D A+++ + +L
Sbjct: 125 --PAAPNHKLGTLTTFARLPHTGQAHRAMADAEMAANLMAHLAEEL 168
>gi|343521353|ref|ZP_08758321.1| putative DNA polymerase III, alpha subunit, Gram-positive type
[Parvimonas sp. oral taxon 393 str. F0440]
gi|343396559|gb|EGV09096.1| putative DNA polymerase III, alpha subunit, Gram-positive type
[Parvimonas sp. oral taxon 393 str. F0440]
Length = 820
Score = 37.4 bits (85), Expect = 1.9, Method: Composition-based stats.
Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 15/108 (13%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
P + +++P +++ A+FVAHNA FD+ F+ R +N+ N F+DT+
Sbjct: 51 PLISEIMPKFLEFSKD-------AVFVAHNA-EFDISFIKTNCKR--LNLEFNPTFIDTM 100
Query: 68 PLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASIL 115
AR ++ L L + G+ L + HRA D + + IL
Sbjct: 101 GFARSVLPH----LKNHKLNTLCKELGVKLL-NHHRASFDAEACSGIL 143
>gi|339320593|ref|YP_004683115.1| DNA polymerase III PolC [Mycoplasma bovis Hubei-1]
gi|392429663|ref|YP_006470708.1| DNA polymerase III subunit alpha [Mycoplasma bovis HB0801]
gi|338226718|gb|AEI89780.1| DNA polymerase III PolC [Mycoplasma bovis Hubei-1]
gi|392051072|gb|AFM51447.1| DNA polymerase III subunit alpha [Mycoplasma bovis HB0801]
Length = 1458
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 56/111 (50%), Gaps = 13/111 (11%)
Query: 28 GEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQ 87
G+IAI AHNA+ FD FL ++F +M P +DTL +R + G K L+
Sbjct: 504 GKIAI--AHNAK-FDFNFLKEQFRLNNMQFP-RVTVIDTLVASR--IGFPGYKRHK--LE 555
Query: 88 ALREYFGIPLEGS-AHRAMSDVNSLASILERITSDLN----FTLSDLLKTS 133
+ G+ + + AHR D LA++ I S+LN FTL DL K S
Sbjct: 556 DVASRLGVVYDPNVAHRGDYDAKVLANVWVNIISELNAKGIFTLDDLSKYS 606
>gi|260801297|ref|XP_002595532.1| hypothetical protein BRAFLDRAFT_244216 [Branchiostoma floridae]
gi|229280779|gb|EEN51544.1| hypothetical protein BRAFLDRAFT_244216 [Branchiostoma floridae]
Length = 208
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 48/111 (43%), Gaps = 8/111 (7%)
Query: 11 EDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMN--IPDNWRFLDTLP 68
EDL+ V+ +N + P VAHN RFD P L E P + +DT+
Sbjct: 85 EDLVKSVVHLLNRQEPP---VCLVAHNGNRFDFPILKAELGESETVDLFPQDVLCVDTMV 141
Query: 69 LARELMKQNGSVSSKTSLQALREYFG-IPLEGSAHRAMSDVNSLASILERI 118
++L G S + + FG P AH A DV ++ I++++
Sbjct: 142 AIKDLYA--GQFKSFSLPKIHETLFGEAPPPEVAHTAEGDVITMVKIVKKL 190
>gi|338734104|ref|YP_004672577.1| DNA polymerase III subunit epsilon [Simkania negevensis Z]
gi|336483487|emb|CCB90086.1| DNA polymerase III epsilon subunit [Simkania negevensis Z]
Length = 249
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 67/129 (51%), Gaps = 24/129 (18%)
Query: 8 PRMEDLIPIVIKYVNSR--LGPG---EIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWR 62
P+++D++ +++ + +G G +IAI V A++F +P S+ S +P
Sbjct: 72 PKIQDVLAEYLEFFSGHVIIGHGIPFDIAI-VEAAAQKFRIP------SKLS-KLP---- 119
Query: 63 FLDTLPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITSDL 122
F+DTL LAR + S SL+ LR +F I G AHRAM+DV+ + + + S
Sbjct: 120 FIDTLRLARLYGE-----SPTNSLEMLRSHFNIKPHG-AHRAMNDVHVNIEVFKHLCSKF 173
Query: 123 NFTLSDLLK 131
T ++LK
Sbjct: 174 K-TTEEILK 181
>gi|385859028|ref|YP_005905538.1| DNA polymerase III, PolC [Mycoplasma haemofelis Ohio2]
gi|334192729|gb|AEG72457.1| DNA polymerase III, PolC [Mycoplasma haemofelis Ohio2]
Length = 1395
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 54/114 (47%), Gaps = 8/114 (7%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
++ VAHN FD PFL ++ + M P + +DTL L++ + + S SL A+
Sbjct: 433 SVLVAHNGIEFDFPFLNAKYIKLGME-PLSNPLIDTLRLSQTIFSEEKYKSH--SLGAIC 489
Query: 91 EYFGIPLE-GSAHRAMSDVNSLASI----LERITSDLNFTLSDLLKTSFRANFD 139
+ G+ + AH A DV+ L + LE + L D LK + A F+
Sbjct: 490 KRVGVEYDLEHAHSADFDVDVLWQVFMYSLEPKLKEWGVNLEDGLKEANDAVFN 543
>gi|433610196|ref|YP_007042565.1| hypothetical protein BN6_84770 [Saccharothrix espanaensis DSM
44229]
gi|407888049|emb|CCH35692.1| hypothetical protein BN6_84770 [Saccharothrix espanaensis DSM
44229]
Length = 278
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+ VAHN FD FLA EF R +++ + L T+ LA + +K SLQA +
Sbjct: 83 VLVAHNLA-FDARFLAAEFGRLGVDLAVD--GLCTMRLAPRFLP-----GAKRSLQACCD 134
Query: 92 YFGIPLEGSAHRAMSDVNSLASILERITSD 121
GI LE AH A+ D + +L D
Sbjct: 135 AAGIVLE-DAHSALHDARATGRLLAHYLRD 163
>gi|397466301|ref|XP_003804903.1| PREDICTED: three prime repair exonuclease 2 [Pan paniscus]
Length = 236
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 8/97 (8%)
Query: 20 YVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGS 79
+++ + GP VAHN +D P L E R +P + LDTLP R L + +
Sbjct: 104 FLSRQAGP---ICLVAHNGFDYDFPLLCAELRRLGARLPRDTVCLDTLPALRGLDRAHSH 160
Query: 80 VS-----SKTSLQALREYFGIPLEGSAHRAMSDVNSL 111
+ SL +L + +AH A DV++L
Sbjct: 161 GTRARGRQGYSLGSLFHRYFRAEPSAAHSAEGDVHTL 197
>gi|340778124|ref|ZP_08698067.1| DNA polymerase III, epsilon subunit [Acetobacter aceti NBRC 14818]
Length = 233
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
Query: 33 FVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREY 92
+AHNA FD F+ E R D R +DTL LARE SL AL
Sbjct: 87 LIAHNAS-FDFGFINAEMERAGRPPLDPSRKVDTLELARERFP-----GMPNSLDALCRR 140
Query: 93 FGIPL-EGSAHRAMSDVNSLASI 114
+GI L E + H A+ D LA +
Sbjct: 141 YGIDLSERTTHNALLDCKLLADV 163
>gi|229006094|ref|ZP_04163782.1| DNA polymerase III polC-type [Bacillus mycoides Rock1-4]
gi|228755170|gb|EEM04527.1| DNA polymerase III polC-type [Bacillus mycoides Rock1-4]
Length = 1433
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 7/90 (7%)
Query: 33 FVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREY 92
VAHNA FD+ FL F +C ++ P N +DTL LAR L + L + +
Sbjct: 499 LVAHNAS-FDMGFLNVGFKKCGLDKPKN-PVIDTLELARFLFPE----MKNHRLNTMCKK 552
Query: 93 FGIPLEGSAHRAMSDVNSLASILERITSDL 122
I L HRA+ D + +L ++ D+
Sbjct: 553 LDIELT-QHHRAIYDTEATGYLLVKMLKDV 581
>gi|427736797|ref|YP_007056341.1| DNA polymerase III subunit epsilon-like 3'-5' exonuclease
[Rivularia sp. PCC 7116]
gi|427371838|gb|AFY55794.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
[Rivularia sp. PCC 7116]
Length = 268
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 9/82 (10%)
Query: 35 AHNARRFDVPFLAKEFSRCSMNIP-DNWRFLDTLPLARELMKQNGSVSSKTSLQALREYF 93
+N+ RFD+P L EFSR ++ + R +D + ++ +T A R Y
Sbjct: 92 GYNSNRFDIPVLIAEFSRVDIDFKLEGRRIIDVQTIFHKM-------EPRTLRAAYRYYC 144
Query: 94 GIPLEGSAHRAMSDVNSLASIL 115
G LEG AH A +D+ + +
Sbjct: 145 GEKLEG-AHDAANDIRATYEVF 165
>gi|399000985|ref|ZP_10703705.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
[Pseudomonas sp. GM18]
gi|398128740|gb|EJM18122.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
[Pseudomonas sp. GM18]
Length = 203
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 46/106 (43%), Gaps = 10/106 (9%)
Query: 17 VIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQ 76
V+ VN +G I +AHNA FD F E R N F +L LAR LM
Sbjct: 73 VMNEVNEFVG---ITPLLAHNAA-FDQKFWDYELGRIKRTRLQN--FACSLLLARRLM-- 124
Query: 77 NGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITSDL 122
+ L L + +P G AHRAM+D A++ + +L
Sbjct: 125 --PAAPNHKLGTLTTFASLPNTGKAHRAMADAEMAANLTAHLAQEL 168
>gi|298354341|dbj|BAJ09462.1| exonuclease motif containing protein Pmn34 [Physarum polycephalum]
Length = 326
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 52/110 (47%), Gaps = 4/110 (3%)
Query: 12 DLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLAR 71
+++ V K+ +++ G ++ +FV + + + LA E SR ++ P NW F++ A
Sbjct: 201 EIVKWVQKFSSAKQGEEDLFVFVMPHFAKMEKITLAYELSRANLEAPPNWVFVN----AT 256
Query: 72 ELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITSD 121
++++N K L + + HRA +D ++ L ++ D
Sbjct: 257 NILEKNLPFLDKIQLDHIYSHLYGVAPQRLHRADADTKTVKECLAKVFPD 306
>gi|334183910|ref|NP_001185397.1| polynucleotidyl transferase, ribonuclease H-like protein
[Arabidopsis thaliana]
gi|332197465|gb|AEE35586.1| polynucleotidyl transferase, ribonuclease H-like protein
[Arabidopsis thaliana]
Length = 495
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
I+ HN RFD + + F+ ++ P+ +D+L L L ++ G + + +L
Sbjct: 99 IWAGHNIIRFDCVRIREAFAEIGLSPPEPKATIDSLSL---LSQKFGKRAGDMKMASLAT 155
Query: 92 YFGIPLEGSAHRAMSDV 108
YFG L AHR++ DV
Sbjct: 156 YFG--LGDQAHRSLDDV 170
>gi|326334744|ref|ZP_08200950.1| polysaccharide biosynthesis protein [Capnocytophaga sp. oral taxon
338 str. F0234]
gi|325693057|gb|EGD34990.1| polysaccharide biosynthesis protein [Capnocytophaga sp. oral taxon
338 str. F0234]
Length = 244
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 15/84 (17%)
Query: 23 SRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPD----------NWRFLDTLPLARE 72
S+ G+ + AHN R FD PF+A+ + IP+ + FLDTL L +
Sbjct: 105 SQFFNGKQYLLAAHNGREFDFPFIARRMLIHQLPIPNILQLFGKKPWEFAFLDTLDLWK- 163
Query: 73 LMKQNGSVSSKTSLQALREYFGIP 96
G TSL L G+P
Sbjct: 164 ----FGDYKHYTSLNLLAYILGVP 183
>gi|260424856|ref|ZP_05779017.1| DNA polymerase III PolC-type [Dialister invisus DSM 15470]
gi|260403394|gb|EEW96941.1| DNA polymerase III PolC-type [Dialister invisus DSM 15470]
Length = 196
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 55/118 (46%), Gaps = 18/118 (15%)
Query: 8 PRMEDLIPIVIKYVNS--RLGPG--EIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRF 63
P ++D++PI + ++ +G G I + N + P + ++
Sbjct: 91 PPIDDVLPIFMTFIEGFPLVGHGLDSDLIVIDRNLKAVGKPLVTNDY------------- 137
Query: 64 LDTLPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITSD 121
+DT LA+ L+ + K S++AL EY+ +P + HRAM D + + ER+ ++
Sbjct: 138 IDTHSLAKLLLPEREGEHRKYSVKALAEYYELPC-STFHRAMDDCMAEKMLFERLLAE 194
>gi|426397848|ref|XP_004065116.1| PREDICTED: three prime repair exonuclease 2 isoform 1 [Gorilla
gorilla gorilla]
gi|426397852|ref|XP_004065118.1| PREDICTED: three prime repair exonuclease 2 isoform 3 [Gorilla
gorilla gorilla]
Length = 236
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 8/97 (8%)
Query: 20 YVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGS 79
+++ + GP VAHN +D P L E R +P + LDTLP R L + +
Sbjct: 104 FLSRQAGP---ICLVAHNGFDYDFPLLCAELRRLGARLPRDTVCLDTLPALRGLDRAHSH 160
Query: 80 VS-----SKTSLQALREYFGIPLEGSAHRAMSDVNSL 111
+ SL +L + +AH A DV++L
Sbjct: 161 GTRARDRQGYSLGSLFHRYFRAEPSAAHSAEGDVHTL 197
>gi|63079718|ref|NP_542432.2| three prime repair exonuclease 2 [Homo sapiens]
gi|114690568|ref|XP_001137293.1| PREDICTED: three prime repair exonuclease 2 isoform 1 [Pan
troglodytes]
gi|410057135|ref|XP_003954160.1| PREDICTED: three prime repair exonuclease 2 [Pan troglodytes]
gi|12751317|gb|AAK07617.1|AF319570_2 3'-5' exonuclease TREX2 [Homo sapiens]
gi|12751323|gb|AAK07620.1|AF319573_2 3'-5' exonuclease TREX2 [Homo sapiens]
gi|5731109|gb|AAD48776.1| 3'-5' exonuclease TREX2 [Homo sapiens]
gi|71648780|gb|AAZ38719.1| three prime repair exonuclease 2 [Homo sapiens]
gi|162317630|gb|AAI56245.1| Three prime repair exonuclease 2 [synthetic construct]
gi|162318146|gb|AAI57022.1| Three prime repair exonuclease 2 [synthetic construct]
gi|261860926|dbj|BAI46985.1| three prime repair exonuclease 2 [synthetic construct]
Length = 236
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 8/97 (8%)
Query: 20 YVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGS 79
+++ + GP VAHN +D P L E R +P + LDTLP R L + +
Sbjct: 104 FLSRQAGP---ICLVAHNGFDYDFPLLCAELRRLGARLPRDTVCLDTLPALRGLDRAHSH 160
Query: 80 VS-----SKTSLQALREYFGIPLEGSAHRAMSDVNSL 111
+ SL +L + +AH A DV++L
Sbjct: 161 GTRARGRQGYSLGSLFHRYFRAEPSAAHSAEGDVHTL 197
>gi|15221225|ref|NP_177579.1| polynucleotidyl transferase, ribonuclease H-like protein
[Arabidopsis thaliana]
gi|12324816|gb|AAG52378.1|AC011765_30 putative exonuclease; 20146-18080 [Arabidopsis thaliana]
gi|20466502|gb|AAM20568.1| putative exonuclease [Arabidopsis thaliana]
gi|23198160|gb|AAN15607.1| putative exonuclease [Arabidopsis thaliana]
gi|332197464|gb|AEE35585.1| polynucleotidyl transferase, ribonuclease H-like protein
[Arabidopsis thaliana]
Length = 506
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
I+ HN RFD + + F+ ++ P+ +D+L L L ++ G + + +L
Sbjct: 99 IWAGHNIIRFDCVRIREAFAEIGLSPPEPKATIDSLSL---LSQKFGKRAGDMKMASLAT 155
Query: 92 YFGIPLEGSAHRAMSDV 108
YFG L AHR++ DV
Sbjct: 156 YFG--LGDQAHRSLDDV 170
>gi|60594178|pdb|1Y97|A Chain A, The Human Trex2 3' Exonuclease Structure Suggests A
Mechanism For Efficient Non-Processive Dna Catalysis
gi|60594179|pdb|1Y97|B Chain B, The Human Trex2 3' Exonuclease Structure Suggests A
Mechanism For Efficient Non-Processive Dna Catalysis
Length = 238
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 8/97 (8%)
Query: 20 YVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGS 79
+++ + GP VAHN +D P L E R +P + LDTLP R L + +
Sbjct: 106 FLSRQAGP---ICLVAHNGFDYDFPLLCAELRRLGARLPRDTVCLDTLPALRGLDRAHSH 162
Query: 80 VS-----SKTSLQALREYFGIPLEGSAHRAMSDVNSL 111
+ SL +L + +AH A DV++L
Sbjct: 163 GTRARGRQGYSLGSLFHRYFRAEPSAAHSAEGDVHTL 199
>gi|57239226|ref|YP_180362.1| DNA polymerase III, epsilon chain [Ehrlichia ruminantium str.
Welgevonden]
gi|57161305|emb|CAH58228.1| DNA polymerase III, epsilon subunit [Ehrlichia ruminantium str.
Welgevonden]
Length = 242
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 7/98 (7%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
++ V HNA FD+ F+ E + + +++ +DTL LAR K+ VSS +L AL
Sbjct: 90 SVLVIHNAV-FDIKFIKMELDKIQKSYNSDFQVVDTLILAR---KKFPGVSS--TLDALC 143
Query: 91 EYFGIPLEGSA-HRAMSDVNSLASILERITSDLNFTLS 127
+ F I L+ H A+ D L + ++ L +L+
Sbjct: 144 KRFNISLQDRKFHGALLDATLLGKVYVQLMGGLQRSLN 181
>gi|373449999|ref|ZP_09542082.1| putative DNA polymerase III, epsilon subunit (fragment) [Wolbachia
pipientis wAlbB]
gi|371932787|emb|CCE77069.1| putative DNA polymerase III, epsilon subunit (fragment) [Wolbachia
pipientis wAlbB]
Length = 113
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
Query: 49 EFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREYFGIPLEG-SAHRAMSD 107
E + + + + R LDTLPLAR+ SL AL E FGI LE H A+ D
Sbjct: 2 ELGKLNAKLISSDRVLDTLPLARK------KFGPPASLSALCERFGISLESRELHGALID 55
Query: 108 VNSLASI-LERITSDLNFTLSDLLKTSFRANF 138
LA + +ER+ + L+ + S R +
Sbjct: 56 AELLAKVYVERLQTPLDRCQHAVRNLSLRGHL 87
>gi|340353728|ref|ZP_08676538.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella pallens
ATCC 700821]
gi|339608967|gb|EGQ13849.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella pallens
ATCC 700821]
Length = 284
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 12/88 (13%)
Query: 33 FVAHNARRFDVPFLAKEFSRCSMNIP-DNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
F N+ RFD+P LA+EF R ++ R +D + ++ ++N L A E
Sbjct: 90 FAGFNSNRFDIPLLAEEFLRAGVDFDFSKCRLIDAQNIYHKMERRN--------LAAAYE 141
Query: 92 YF-GIPLEG--SAHRAMSDVNSLASILE 116
Y+ G +E +AHRA D + +L+
Sbjct: 142 YYCGRKMEDDFAAHRADEDTEATWRVLQ 169
>gi|325983345|ref|YP_004295747.1| DNA polymerase III subunit epsilon [Nitrosomonas sp. AL212]
gi|325532864|gb|ADZ27585.1| DNA polymerase III, epsilon subunit [Nitrosomonas sp. AL212]
Length = 245
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 9/87 (10%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNW--RFLDTLPLARELMKQNGSVSSKTSLQA 88
A + HNA FDV FL E C++ DN+ + DTL LA+EL + +L A
Sbjct: 84 AELIIHNAP-FDVGFLNHELGLCNLKALDNYCSQITDTLKLAKELHP-----GKRNNLDA 137
Query: 89 LREYFGIP-LEGSAHRAMSDVNSLASI 114
L E + I + H A+ D LA +
Sbjct: 138 LCERYNIDNSKRKLHGALLDAELLAEV 164
>gi|393767403|ref|ZP_10355951.1| DNA polymerase III subunit epsilon [Methylobacterium sp. GXF4]
gi|392727113|gb|EIZ84430.1| DNA polymerase III subunit epsilon [Methylobacterium sp. GXF4]
Length = 238
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 48/97 (49%), Gaps = 16/97 (16%)
Query: 28 GEIAIFVA------HNARRFDVPFLAKEFSRCSMNIPDNWRF---LDTLPLARELMKQNG 78
GE+ F+A HNA FDV FL E++R N P + +DTLP+AR K G
Sbjct: 76 GELQAFLADGRLVIHNAP-FDVGFLNMEYARLGANAPPPIQLDDVVDTLPMARR--KHPG 132
Query: 79 SVSSKTSLQALREYFGIPLE-GSAHRAMSDVNSLASI 114
+ + +L AL +GI + H A+ D LA +
Sbjct: 133 AAN---NLDALCNRYGIDTSRRTKHGALLDAQILAEV 166
>gi|365091717|ref|ZP_09329072.1| DNA-directed DNA polymerase [Acidovorax sp. NO-1]
gi|363416028|gb|EHL23152.1| DNA-directed DNA polymerase [Acidovorax sp. NO-1]
Length = 203
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 45/92 (48%), Gaps = 7/92 (7%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
A VAHNA FD F E + + P F T+ L+R L Q S L L
Sbjct: 84 APMVAHNAA-FDSKFWQAELALAGLTAPQP--FACTVLLSRRLYPQAPS----HKLGTLV 136
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILERITSDL 122
+Y G+P G AHRA++D A++L R+ DL
Sbjct: 137 DYHGLPRTGQAHRALADAEMAAALLARMQHDL 168
>gi|260769807|ref|ZP_05878740.1| DNA polymerase III alpha subunit [Vibrio furnissii CIP 102972]
gi|260615145|gb|EEX40331.1| DNA polymerase III alpha subunit [Vibrio furnissii CIP 102972]
Length = 205
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 53/113 (46%), Gaps = 9/113 (7%)
Query: 33 FVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREY 92
VAHNA FD FL EF R + P +F ++ +AR L+ QN L ++
Sbjct: 90 LVAHNAS-FDKRFLDAEFDRIGVRYPG--QFACSMLIARRLI-QNAPTHKLGDLVRFKQ- 144
Query: 93 FGIPLEGSAHRAMSDVNSLASILERITSDLNFTLSDLLKTSFRANFDHSKKNK 145
I +G+ HRA++D AS+ + +DL +L SF SK NK
Sbjct: 145 --IENDGTFHRALADSQMTASLWMLMVNDLR--ERGVLNPSFALMQKISKTNK 193
>gi|42568689|ref|NP_200947.3| exonuclease-like protein [Arabidopsis thaliana]
gi|111074224|gb|ABH04485.1| At5g61390 [Arabidopsis thaliana]
gi|332010078|gb|AED97461.1| exonuclease-like protein [Arabidopsis thaliana]
Length = 487
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
I+ HN +FD P + + F+ + P+ +D+L L L ++ G + + L
Sbjct: 102 IWAGHNILKFDCPRIREAFAEIGRDPPEPKGTIDSLAL---LTQRFGRRAGDMKMATLAT 158
Query: 92 YFGIPLEGSAHRAMSDV 108
YFG L HR++ DV
Sbjct: 159 YFG--LGNQTHRSLDDV 173
>gi|395754595|ref|XP_002832336.2| PREDICTED: three prime repair exonuclease 2 [Pongo abelii]
Length = 236
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 8/97 (8%)
Query: 20 YVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGS 79
+++ + GP VAHN +D P L E R +P + LDTLP R L + +
Sbjct: 104 FLSRQAGP---ICLVAHNGFDYDFPLLCAELRRLGARLPRDTVCLDTLPALRGLDRAHSH 160
Query: 80 VS-----SKTSLQALREYFGIPLEGSAHRAMSDVNSL 111
+ SL +L + +AH A DV++L
Sbjct: 161 GTRARGRQGYSLGSLFHRYFRAEPSAAHSAEGDVHTL 197
>gi|349609568|ref|ZP_08888956.1| hypothetical protein HMPREF1028_00931 [Neisseria sp. GT4A_CT1]
gi|348611653|gb|EGY61294.1| hypothetical protein HMPREF1028_00931 [Neisseria sp. GT4A_CT1]
Length = 470
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 8/87 (9%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
++ VAHN+R FD FL EF R ++ L T+ L+R L Q K +L ++
Sbjct: 99 SLIVAHNSR-FDYTFLRHEFCRAGIDFAAP--ALCTVQLSRRLYPQ----FYKHNLDSII 151
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILER 117
GI + HRA++DV +LA LE
Sbjct: 152 SRMGIQTD-ERHRALADVLALADYLEH 177
>gi|445115196|ref|ZP_21378170.1| hypothetical protein HMPREF0662_01225 [Prevotella nigrescens F0103]
gi|444840496|gb|ELX67527.1| hypothetical protein HMPREF0662_01225 [Prevotella nigrescens F0103]
Length = 284
Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 12/88 (13%)
Query: 33 FVAHNARRFDVPFLAKEFSRCSMNIP-DNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
F N+ RFD+P LA+EF R ++ R +D + ++ ++N L A E
Sbjct: 90 FAGFNSNRFDIPLLAEEFLRAGVDFDFSKCRLIDAQNIYHKMERRN--------LAAAYE 141
Query: 92 YF-GIPLEG--SAHRAMSDVNSLASILE 116
Y+ G +E +AHRA D + +L+
Sbjct: 142 YYCGRKMEDDFTAHRADEDTEATWRVLQ 169
>gi|410631369|ref|ZP_11342044.1| DNA polymerase III subunit epsilon [Glaciecola arctica BSs20135]
gi|410148815|dbj|GAC18911.1| DNA polymerase III subunit epsilon [Glaciecola arctica BSs20135]
Length = 205
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 7/95 (7%)
Query: 33 FVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREY 92
VAHNA FD FL E R + N F +L LAR + +Q + L +L Y
Sbjct: 91 LVAHNAS-FDKRFLDAELGRIARYY--NGNFACSLLLARRIYQQ----APNHKLGSLIAY 143
Query: 93 FGIPLEGSAHRAMSDVNSLASILERITSDLNFTLS 127
IP +G HRA+ D A + + +D++ ++
Sbjct: 144 KNIPSDGGFHRALFDSEMTAKLWMTMLNDISLMIT 178
>gi|326386170|ref|ZP_08207794.1| DNA polymerase III, epsilon subunit [Novosphingobium
nitrogenifigens DSM 19370]
gi|326209395|gb|EGD60188.1| DNA polymerase III, epsilon subunit [Novosphingobium
nitrogenifigens DSM 19370]
Length = 230
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
A VAHNA FD FL E + C M R +DT+ +AR K G +K SL AL
Sbjct: 84 APLVAHNAG-FDFGFLNSELTFCGMGEVSRDRMVDTVAIARR--KHPG---AKLSLDALC 137
Query: 91 EYFGIPLEG-SAHRAMSDVNSLASI 114
+GI + H A+ D LA +
Sbjct: 138 SRYGIDRSHRTKHGALLDAELLAQL 162
>gi|148358915|ref|YP_001250122.1| DNA polymerase III subunit epsilon [Legionella pneumophila str.
Corby]
gi|296106963|ref|YP_003618663.1| DNA polymerase III subunit epsilon [Legionella pneumophila 2300/99
Alcoy]
gi|148280688|gb|ABQ54776.1| DNA polymerase III, epsilon subunit [Legionella pneumophila str.
Corby]
gi|295648864|gb|ADG24711.1| DNA polymerase III subunit epsilon [Legionella pneumophila 2300/99
Alcoy]
Length = 233
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 59/138 (42%), Gaps = 21/138 (15%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMN--IPDNWRFLD 65
P +D++ I++V E + + HNA FDV FL E N + D R LD
Sbjct: 68 PLFQDIVTEFIQFV-------EGSELIIHNAP-FDVGFLNSELKHVKWNKTLEDYCRILD 119
Query: 66 TLPLARELMKQNGSVSSKTSLQALREYFGIP-LEGSAHRAMSDVNSLASILERITSDLNF 124
TL LARE K G + SL AL + + I H A+ D LA + +T
Sbjct: 120 TLILARE--KHPG---QRNSLDALCKRYEIDHFNRELHGALLDAEILAYVYLAMTGG--- 171
Query: 125 TLSDLLKTSFRANFDHSK 142
L T ++ HSK
Sbjct: 172 --QSSLFTEVESSMSHSK 187
>gi|340361987|ref|ZP_08684392.1| DNA polymerase III, epsilon subunit [Neisseria macacae ATCC 33926]
gi|339887958|gb|EGQ77460.1| DNA polymerase III, epsilon subunit [Neisseria macacae ATCC 33926]
Length = 470
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 8/87 (9%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
++ VAHN+R FD FL EF R ++ L T+ L+R L Q K +L ++
Sbjct: 99 SLIVAHNSR-FDYTFLRHEFCRAGIDFAAP--ALCTVQLSRRLYPQ----FYKHNLDSII 151
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILER 117
GI + HRA++DV +LA LE
Sbjct: 152 SRMGIQTD-DRHRALADVLALADYLEH 177
>gi|238897890|ref|YP_002923569.1| DNA polymerase III subunit epsilon [Candidatus Hamiltonella defensa
5AT (Acyrthosiphon pisum)]
gi|229465647|gb|ACQ67421.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
proofreading function [Candidatus Hamiltonella defensa
5AT (Acyrthosiphon pisum)]
Length = 241
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 46/101 (45%), Gaps = 11/101 (10%)
Query: 33 FVAHNARRFDVPFLAKEFSRCSMNIPDNWRFL---DTLPLARELMKQNGSVSSKTSLQAL 89
+ HNA FD+ F+ EFS NIP F DTL LAR L + SL AL
Sbjct: 91 LIIHNAA-FDIGFMDYEFSALQQNIPKTNTFCTVTDTLALARRLFP-----GKRNSLDAL 144
Query: 90 REYFGIP-LEGSAHRAMSDVNSLASILERITSDLN-FTLSD 128
+ + I + + H A+ D LA + +T F+ SD
Sbjct: 145 CDRYQIDNSKRTLHGALLDAQILAEVYLAMTGGQTLFSFSD 185
>gi|58579186|ref|YP_197398.1| DNA polymerase III, epsilon chain [Ehrlichia ruminantium str.
Welgevonden]
gi|58417812|emb|CAI27016.1| DNA polymerase III, epsilon chain [Ehrlichia ruminantium str.
Welgevonden]
Length = 242
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 7/98 (7%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
++ V HNA FD+ F+ E + + +++ +DTL LAR K+ VSS +L AL
Sbjct: 90 SVLVIHNAV-FDIKFIKMELDKIQKSYNSDFQVVDTLILAR---KKFPGVSS--TLDALC 143
Query: 91 EYFGIPLEGSA-HRAMSDVNSLASILERITSDLNFTLS 127
+ F I L+ H A+ D L + ++ L +L+
Sbjct: 144 KRFNISLQDRKFHGALLDATLLGKVYVQLMGGLQRSLN 181
>gi|58617240|ref|YP_196439.1| DNA polymerase III, epsilon chain [Ehrlichia ruminantium str.
Gardel]
gi|58416852|emb|CAI27965.1| DNA polymerase III, epsilon chain [Ehrlichia ruminantium str.
Gardel]
Length = 242
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 7/98 (7%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
++ V HNA FD+ F+ E + + +++ +DTL LAR K+ VSS +L AL
Sbjct: 90 SVLVIHNAV-FDIKFIKMELDKIQKSYNSDFQVVDTLILAR---KKFPGVSS--TLDALC 143
Query: 91 EYFGIPLEGSA-HRAMSDVNSLASILERITSDLNFTLS 127
+ F I L+ H A+ D L + ++ L +L+
Sbjct: 144 KRFNISLQDRKFHGALLDATLLGKVYVQLMGGLQRSLN 181
>gi|268577613|ref|XP_002643789.1| Hypothetical protein CBG02000 [Caenorhabditis briggsae]
Length = 299
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 74 MKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITSDLNFT 125
M Q ++ ++ + ++ IP EG AH AM D + LA + +RI + F
Sbjct: 152 MAQQQDAVHQSLIERMSAFYNIPNEGQAHNAMDDCSFLAKVTKRILDNGTFV 203
>gi|410057133|ref|XP_003317815.2| PREDICTED: three prime repair exonuclease 2 isoform 2 [Pan
troglodytes]
gi|109716243|gb|ABG43103.1| 3'-5' exonuclease TREX2 long form [Homo sapiens]
Length = 278
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 41/98 (41%), Gaps = 10/98 (10%)
Query: 20 YVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGS 79
+++ + GP VAHN +D P L E R +P + LDTLP R L + +
Sbjct: 146 FLSRQAGP---ICLVAHNGFDYDFPLLCAELRRLGARLPRDTVCLDTLPALRGLDRAHSH 202
Query: 80 VSSKTSLQA------LREYFGIPLEGSAHRAMSDVNSL 111
+ Q YF +AH A DV++L
Sbjct: 203 GTRARGRQGYSLGSLFHRYFRAE-PSAAHSAEGDVHTL 239
>gi|398905218|ref|ZP_10652674.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
[Pseudomonas sp. GM50]
gi|398174728|gb|EJM62514.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
[Pseudomonas sp. GM50]
Length = 203
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 46/106 (43%), Gaps = 10/106 (9%)
Query: 17 VIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQ 76
V+ VN +G I +AHNA FD F E R N F +L LAR LM
Sbjct: 73 VMNEVNEFVG---ITPLLAHNAA-FDQKFWDYELGRIKRTRLQN--FACSLLLARRLM-- 124
Query: 77 NGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITSDL 122
+ L L + +P G AHRAM+D A++ + +L
Sbjct: 125 --PAAPNHKLGTLTTFASLPNTGKAHRAMADAEMAANLTAHLAEEL 168
>gi|419797504|ref|ZP_14322977.1| exonuclease [Neisseria sicca VK64]
gi|385697941|gb|EIG28341.1| exonuclease [Neisseria sicca VK64]
Length = 470
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 8/87 (9%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
++ VAHN+R FD FL EF R ++ L T+ L+R L Q K +L ++
Sbjct: 99 SLIVAHNSR-FDYTFLRHEFCRAGIDFAAP--ALCTVQLSRRLYPQ----FYKHNLDSII 151
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILER 117
GI + HRA++DV +LA LE
Sbjct: 152 SRMGIQTD-DRHRALADVLALADYLEH 177
>gi|148825595|ref|YP_001290348.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittEE]
gi|229847255|ref|ZP_04467358.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 7P49H1]
gi|148715755|gb|ABQ97965.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittEE]
gi|229809798|gb|EEP45521.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 7P49H1]
Length = 256
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 16/116 (13%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIP--DNWRFLD 65
P +DL + Y+N A + HNA FDV F+ EF + ++N+ D D
Sbjct: 76 PEFKDLAQDFLDYING-------AELLIHNAP-FDVGFMDYEFRKLNLNVKTDDICLVTD 127
Query: 66 TLPLARELMKQNGSVSSKTSLQALREYFGIP-LEGSAHRAMSDVNSLASILERITS 120
TL +AR++ + +L AL + GI + + H A+ D LA + +T
Sbjct: 128 TLQMARQMYP-----GKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLMMTG 178
>gi|9757860|dbj|BAB08494.1| exonuclease-like protein [Arabidopsis thaliana]
Length = 500
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
I+ HN +FD P + + F+ + P+ +D+L L L ++ G + + L
Sbjct: 99 IWAGHNILKFDCPRIREAFAEIGRDPPEPKGTIDSLAL---LTQRFGRRAGDMKMATLAT 155
Query: 92 YFGIPLEGSAHRAMSDV 108
YFG L HR++ DV
Sbjct: 156 YFG--LGNQTHRSLDDV 170
>gi|426397850|ref|XP_004065117.1| PREDICTED: three prime repair exonuclease 2 isoform 2 [Gorilla
gorilla gorilla]
Length = 278
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 8/97 (8%)
Query: 20 YVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGS 79
+++ + GP VAHN +D P L E R +P + LDTLP R L + +
Sbjct: 146 FLSRQAGP---ICLVAHNGFDYDFPLLCAELRRLGARLPRDTVCLDTLPALRGLDRAHSH 202
Query: 80 VS-----SKTSLQALREYFGIPLEGSAHRAMSDVNSL 111
+ SL +L + +AH A DV++L
Sbjct: 203 GTRARDRQGYSLGSLFHRYFRAEPSAAHSAEGDVHTL 239
>gi|336325466|ref|YP_004605432.1| DNA polymerase III subunit [Corynebacterium resistens DSM 45100]
gi|336101448|gb|AEI09268.1| DNA polymerase III subunit [Corynebacterium resistens DSM 45100]
Length = 1174
Score = 37.0 bits (84), Expect = 2.5, Method: Composition-based stats.
Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 34 VAHNARRFDVPFLAKEFSRCSMNIPDNWRFL-DTLPLARELMK-QNGSVSSKTSL 86
+AHNA FD+ FL EF R + +P ++ DTLPL R+ NGS+ T L
Sbjct: 117 IAHNAP-FDIRFLTSEFERIGVALPAYGAWVHDTLPLCRQCFPGTNGSLEKVTKL 170
>gi|378696267|ref|YP_005178225.1| DNA polymerase III epsilon subunit [Haemophilus influenzae 10810]
gi|301168790|emb|CBW28381.1| DNA polymerase III epsilon subunit [Haemophilus influenzae 10810]
Length = 255
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 16/116 (13%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIP--DNWRFLD 65
P +D+ + Y+N A + HNA FDV F+ EF + ++N+ D D
Sbjct: 76 PEFKDVAQDFLDYING-------AELLIHNAP-FDVGFMDYEFRKLNLNVKTDDICLVTD 127
Query: 66 TLPLARELMKQNGSVSSKTSLQALREYFGIP-LEGSAHRAMSDVNSLASILERITS 120
TL +AR++ + +L AL E GI + + H A+ D LA + +T
Sbjct: 128 TLQMARQMYP-----GKRNNLDALCERLGIDNSKRTLHGALLDAEILADVYLMMTG 178
>gi|197103471|ref|YP_002128848.1| DNA polymerase III subunit epsilon [Phenylobacterium zucineum HLK1]
gi|196476891|gb|ACG76419.1| DNA polymerase III epsilon chain [Phenylobacterium zucineum HLK1]
Length = 234
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 44/86 (51%), Gaps = 9/86 (10%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCS-MNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQAL 89
A VAHNA FD F+ E CS +PD+ R++DTL LA++ SL AL
Sbjct: 87 APIVAHNAA-FDRAFVNYELGLCSRAELPDH-RWIDTLALAKQRFP-----GMHNSLDAL 139
Query: 90 REYFGIPL-EGSAHRAMSDVNSLASI 114
+ F I L E H A+ D LA++
Sbjct: 140 CKRFKISLAEREKHGALIDTKLLAAV 165
>gi|423345229|ref|ZP_17322918.1| exonuclease, DNA polymerase III, epsilon subunit [Parabacteroides
merdae CL03T12C32]
gi|409223015|gb|EKN15952.1| exonuclease, DNA polymerase III, epsilon subunit [Parabacteroides
merdae CL03T12C32]
Length = 256
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 16/100 (16%)
Query: 33 FVAHNARRFDVPFLAKEFSRCSMNIPDNWR-FLDTLPLARELMKQNGSVSSKTSLQALRE 91
+N+ RFD+P LA+EF R ++I N R F+D + ++ +T A +
Sbjct: 90 LAGYNSNRFDIPLLAEEFLRAGVDIDLNKRKFVDVQTIFHKM-------EQRTLAAAYKF 142
Query: 92 YFGIPLEGSAHRAMSDVNSLASILE-------RITSDLNF 124
Y LE +AH A +D + +L+ + +D+NF
Sbjct: 143 YCDKSLE-NAHTAEADTMATYEVLKAQLDRYPELQNDINF 181
>gi|254482913|ref|ZP_05096149.1| exonuclease, DNA polymerase III, epsilon subunit family [marine
gamma proteobacterium HTCC2148]
gi|214036785|gb|EEB77456.1| exonuclease, DNA polymerase III, epsilon subunit family [marine
gamma proteobacterium HTCC2148]
Length = 206
Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 7/90 (7%)
Query: 33 FVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREY 92
VAHNA FD FL E R +++ +F ++ AR + +Q + L L E+
Sbjct: 89 LVAHNAS-FDKRFLDAELERIALSY--TGQFSCSMLAARRIFQQ----APDHKLGTLVEF 141
Query: 93 FGIPLEGSAHRAMSDVNSLASILERITSDL 122
IP+EG HRA+ D A + + +D+
Sbjct: 142 MNIPVEGVFHRALYDSEMTAKLWLAMLNDV 171
>gi|145633563|ref|ZP_01789291.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 3655]
gi|144985769|gb|EDJ92383.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 3655]
Length = 256
Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 16/116 (13%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIP--DNWRFLD 65
P +DL + Y+N A + HNA FDV F+ EF + ++N+ D D
Sbjct: 76 PEFKDLAQDFLDYING-------AELLIHNAP-FDVGFMDYEFRKLNLNVKTDDICLVTD 127
Query: 66 TLPLARELMKQNGSVSSKTSLQALREYFGIP-LEGSAHRAMSDVNSLASILERITS 120
TL +AR++ + +L AL + GI + + H A+ D LA + +T
Sbjct: 128 TLQMARQMYP-----GKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLMMTG 178
>gi|340716952|ref|XP_003396954.1| PREDICTED: hypothetical protein LOC100642728 [Bombus terrestris]
Length = 326
Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 12 DLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLAR 71
D+ +V+ ++N RL P A F+A+N +D P EF N +N +D + L +
Sbjct: 85 DIYNLVMNFIN-RLAPP--ACFIAYNGNNYDYPIFLSEFKDIEKNFSENVLSIDMMHLVK 141
Query: 72 ELM--KQN 77
E KQN
Sbjct: 142 EFFSHKQN 149
>gi|330813374|ref|YP_004357613.1| DNA polymerase III subunit epsilon [Candidatus Pelagibacter sp.
IMCC9063]
gi|327486469|gb|AEA80874.1| DNA polymerase III epsilon subunit [Candidatus Pelagibacter sp.
IMCC9063]
Length = 225
Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
Query: 33 FVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREY 92
V HNA FD+ FL KE + R +DTL LAR+ S+ SL AL +
Sbjct: 85 LVIHNAD-FDLAFLNKELQELDLEPLSKDRVVDTLFLARQKFP-----GSQASLDALCKR 138
Query: 93 FGIPL-EGSAHRAMSDVNSLASI 114
F I E H A+ D N L +
Sbjct: 139 FKINTSEREKHSALVDCNLLTEV 161
>gi|154492230|ref|ZP_02031856.1| hypothetical protein PARMER_01864 [Parabacteroides merdae ATCC
43184]
gi|423722175|ref|ZP_17696351.1| exonuclease, DNA polymerase III, epsilon subunit [Parabacteroides
merdae CL09T00C40]
gi|154087455|gb|EDN86500.1| exonuclease, DNA polymerase III, epsilon subunit family
[Parabacteroides merdae ATCC 43184]
gi|409242666|gb|EKN35427.1| exonuclease, DNA polymerase III, epsilon subunit [Parabacteroides
merdae CL09T00C40]
Length = 256
Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 16/100 (16%)
Query: 33 FVAHNARRFDVPFLAKEFSRCSMNIPDNWR-FLDTLPLARELMKQNGSVSSKTSLQALRE 91
+N+ RFD+P LA+EF R ++I N R F+D + ++ +T A +
Sbjct: 90 LAGYNSNRFDIPLLAEEFLRAGVDIDLNKRKFVDVQTIFHKM-------EQRTLAAAYKF 142
Query: 92 YFGIPLEGSAHRAMSDVNSLASILE-------RITSDLNF 124
Y LE +AH A +D + +L+ + +D+NF
Sbjct: 143 YCDKSLE-NAHTAEADTMATYEVLKAQLDRYPELQNDINF 181
>gi|398837946|ref|ZP_10595230.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
[Pseudomonas sp. GM102]
gi|398858268|ref|ZP_10613960.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
[Pseudomonas sp. GM79]
gi|398117504|gb|EJM07255.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
[Pseudomonas sp. GM102]
gi|398239580|gb|EJN25287.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
[Pseudomonas sp. GM79]
Length = 203
Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 46/106 (43%), Gaps = 10/106 (9%)
Query: 17 VIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQ 76
V+ VN +G I +AHNA FD F E R N F +L LAR LM
Sbjct: 73 VMNEVNEFVG---ITPLLAHNAA-FDQKFWDYELGRIKRTRLQN--FACSLLLARRLM-- 124
Query: 77 NGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITSDL 122
+ L L + +P G AHRAM+D A++ + +L
Sbjct: 125 --PAAPDHKLGTLTTFASLPNTGKAHRAMADAEMAANLTAHLAEEL 168
>gi|407368486|ref|ZP_11115018.1| DNA polymerase III subunit alpha [Pseudomonas mandelii JR-1]
Length = 203
Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 47/106 (44%), Gaps = 10/106 (9%)
Query: 17 VIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQ 76
V+ VN +G I +AHNA FD F E SR N F +L LAR LM
Sbjct: 73 VMNEVNEFVG---ITPLLAHNAA-FDQKFWDFELSRIKRTRLQN--FACSLLLARRLM-- 124
Query: 77 NGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITSDL 122
+ L L + +P G AHRAM+D A++ + +L
Sbjct: 125 --PAAPNHKLGTLTTFARLPNTGKAHRAMADAEMAANLTAHLAQEL 168
>gi|426258224|ref|XP_004022715.1| PREDICTED: three prime repair exonuclease 2 [Ovis aries]
Length = 236
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 8/97 (8%)
Query: 20 YVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGS 79
+++ + GP VAHN +D P L E R ++P + LDTL ++L + +G
Sbjct: 104 FLSRQEGP---VCLVAHNGFNYDFPLLCTELRRLGAHLPQDTICLDTLVALQDLDRAHGH 160
Query: 80 VS-----SKTSLQALREYFGIPLEGSAHRAMSDVNSL 111
+ SL +L + +AH A DV++L
Sbjct: 161 GTRAQGGKSYSLGSLFCCYFQAEPSAAHSAEGDVHTL 197
>gi|406677781|ref|ZP_11084961.1| DNA polymerase III, epsilon subunit [Aeromonas veronii AMC35]
gi|404623588|gb|EKB20438.1| DNA polymerase III, epsilon subunit [Aeromonas veronii AMC35]
Length = 244
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 9/87 (10%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNI--PDNWRFLDTLPLARELMKQNGSVSSKTSLQA 88
A +AHNA FDV F+ EFS+ +N D DTL +AR+L + +L
Sbjct: 95 AELIAHNAP-FDVSFMDYEFSKLGLNFKTADICTITDTLAMARDLFP-----GKRNNLDV 148
Query: 89 LREYFGIP-LEGSAHRAMSDVNSLASI 114
L + +GI + H A+ D LA +
Sbjct: 149 LCDRYGIDNSHRTLHGALLDAEILADV 175
>gi|110635810|ref|YP_676018.1| DNA polymerase III subunit epsilon [Chelativorans sp. BNC1]
gi|110286794|gb|ABG64853.1| DNA polymerase III, epsilon subunit [Chelativorans sp. BNC1]
Length = 242
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 38/85 (44%), Gaps = 7/85 (8%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
A VAHNA FD+ F+ EF R D R +DTL +AR SL AL
Sbjct: 84 AKLVAHNAN-FDIGFINAEFQRVGQPYIDPARVIDTLAIARRKHPMG-----PNSLDALC 137
Query: 91 EYFGIP-LEGSAHRAMSDVNSLASI 114
+GI + H A+ D LA +
Sbjct: 138 RRYGIDNSHRTKHGALLDAELLAEV 162
>gi|422667761|ref|ZP_16727622.1| helix-turn-helix, AraC type:ThiJ/PfpI, partial [Pseudomonas
syringae pv. aptata str. DSM 50252]
gi|330979964|gb|EGH78234.1| helix-turn-helix, AraC type:ThiJ/PfpI [Pseudomonas syringae pv.
aptata str. DSM 50252]
Length = 185
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 50/100 (50%), Gaps = 16/100 (16%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
P++++++ ++ + + E+A+FVA + R+ + F +++ CS P + L
Sbjct: 42 PKLQEIVALMEANLEEPIDLDELAVFVAVSRRQLERLF--QKYLHCS---PSRYYLKLRL 96
Query: 68 PLARELMKQN-----------GSVSSKTSLQALREYFGIP 96
AR+L+KQ G VS+ + REYFGIP
Sbjct: 97 IRARQLLKQTPMSIIEVASVCGFVSTPHFSKCYREYFGIP 136
>gi|119593281|gb|EAW72875.1| hCG2005011, isoform CRA_g [Homo sapiens]
Length = 284
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 41/98 (41%), Gaps = 10/98 (10%)
Query: 20 YVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGS 79
+++ + GP VAHN +D P L E R +P + LDTLP R L + +
Sbjct: 152 FLSRQAGP---ICLVAHNGFDYDFPLLCAELRRLGARLPRDTVCLDTLPALRGLDRAHSH 208
Query: 80 VSSKTSLQA------LREYFGIPLEGSAHRAMSDVNSL 111
+ Q YF +AH A DV++L
Sbjct: 209 GTRARGRQGYSLGSLFHRYFRAE-PSAAHSAEGDVHTL 245
>gi|302345413|ref|YP_003813766.1| exonuclease [Prevotella melaninogenica ATCC 25845]
gi|302149990|gb|ADK96252.1| exonuclease [Prevotella melaninogenica ATCC 25845]
Length = 284
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 10/87 (11%)
Query: 33 FVAHNARRFDVPFLAKEFSRCSMNIP-DNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
F +N+ RFDVP LA+EF R ++ R +D + ++ ++N + + K
Sbjct: 90 FAGYNSNRFDVPMLAEEFLRAGVDFDFSKCRLIDAQNIYHKMERRNLAAAYKF------- 142
Query: 92 YFGIPLEG--SAHRAMSDVNSLASILE 116
Y G +E AH+A D + +L+
Sbjct: 143 YCGRKMEDDFEAHKADQDTEATWCVLQ 169
>gi|88857806|ref|ZP_01132448.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
proofreading function [Pseudoalteromonas tunicata D2]
gi|88819423|gb|EAR29236.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
proofreading function [Pseudoalteromonas tunicata D2]
Length = 252
Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 43/94 (45%), Gaps = 10/94 (10%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRF---LDTLPLARELMKQNGSVSSKTSLQ 87
A V HNA FDV F+ EF R P +F LDTL +AREL K +L
Sbjct: 101 AELVIHNAA-FDVGFMDSEFQRLRTGYPKTAQFCQVLDTLKMARELHP-----GQKNNLD 154
Query: 88 ALREYFGIP-LEGSAHRAMSDVNSLASILERITS 120
AL + I + + H A+ D L+ + +T
Sbjct: 155 ALCRRYNIDNGKRTMHGALLDSEILSDVYLAMTG 188
>gi|423202221|ref|ZP_17188800.1| DNA polymerase III, epsilon subunit [Aeromonas veronii AER39]
gi|404615373|gb|EKB12345.1| DNA polymerase III, epsilon subunit [Aeromonas veronii AER39]
Length = 244
Score = 37.0 bits (84), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 9/87 (10%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNI--PDNWRFLDTLPLARELMKQNGSVSSKTSLQA 88
A +AHNA FDV F+ EFS+ +N D DTL +AR+L + +L
Sbjct: 95 AELIAHNAP-FDVSFMDYEFSKLGLNFKTADICTITDTLAMARDLFP-----GKRNNLDV 148
Query: 89 LREYFGIP-LEGSAHRAMSDVNSLASI 114
L + +GI + H A+ D LA +
Sbjct: 149 LCDRYGIDNSHRTLHGALLDAEILADV 175
>gi|417844960|ref|ZP_12490996.1| DNA polymerase III subunit epsilon [Haemophilus haemolyticus
M21639]
gi|341956161|gb|EGT82600.1| DNA polymerase III subunit epsilon [Haemophilus haemolyticus
M21639]
Length = 256
Score = 37.0 bits (84), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 54/116 (46%), Gaps = 16/116 (13%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFL--D 65
P +D+ + Y+N A + HNA FDV F+ EF + ++N+ N L D
Sbjct: 76 PEFKDVAQDFLDYING-------AELLIHNAP-FDVGFMDYEFRKLNLNVKTNDICLVTD 127
Query: 66 TLPLARELMKQNGSVSSKTSLQALREYFGIP-LEGSAHRAMSDVNSLASILERITS 120
TL +AR++ + +L AL + GI + + H A+ D LA + +T
Sbjct: 128 TLQMARQMYP-----GKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLMMTG 178
>gi|47606206|sp|Q9BQ50.1|TREX2_HUMAN RecName: Full=Three prime repair exonuclease 2; AltName: Full=3'-5'
exonuclease TREX2
gi|12751319|gb|AAK07618.1|AF319571_2 3'-5' exonuclease TREX2-like protein [Homo sapiens]
gi|12751321|gb|AAK07619.1|AF319572_2 3'-5' exonuclease TREX2-like protein [Homo sapiens]
gi|119593276|gb|EAW72870.1| hCG2005011, isoform CRA_c [Homo sapiens]
Length = 279
Score = 37.0 bits (84), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 41/98 (41%), Gaps = 10/98 (10%)
Query: 20 YVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGS 79
+++ + GP VAHN +D P L E R +P + LDTLP R L + +
Sbjct: 147 FLSRQAGP---ICLVAHNGFDYDFPLLCAELRRLGARLPRDTVCLDTLPALRGLDRAHSH 203
Query: 80 VSSKTSLQA------LREYFGIPLEGSAHRAMSDVNSL 111
+ Q YF +AH A DV++L
Sbjct: 204 GTRARGRQGYSLGSLFHRYFRAE-PSAAHSAEGDVHTL 240
>gi|365853570|ref|ZP_09393837.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus
parafarraginis F0439]
gi|363712195|gb|EHL95894.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus
parafarraginis F0439]
Length = 943
Score = 37.0 bits (84), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 43/86 (50%), Gaps = 9/86 (10%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPD-NWRFLDTLPLARELMKQNGSVSSKTSLQAL 89
+FVAHN FD PFL +EF R P+ + +DT+ L++ L+ S LQ L
Sbjct: 87 TVFVAHNVN-FDFPFLNQEFQRVGY--PELSIDAIDTVTLSQILLPTLASY----RLQDL 139
Query: 90 REYFGIPLEGSAHRAMSDVNSLASIL 115
YF I + H A SD + A +L
Sbjct: 140 SAYFNI-VHKHPHTADSDALATAKLL 164
>gi|357028658|ref|ZP_09090688.1| DNA polymerase III subunit epsilon [Mesorhizobium amorphae
CCNWGS0123]
gi|355537925|gb|EHH07175.1| DNA polymerase III subunit epsilon [Mesorhizobium amorphae
CCNWGS0123]
Length = 233
Score = 37.0 bits (84), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 38/85 (44%), Gaps = 7/85 (8%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
A VAHNA FD+ FL EF R D R +DTL LAR SL AL
Sbjct: 84 AKLVAHNAN-FDIGFLNLEFGRLDHPAIDPGRVVDTLALARRKHPM-----GPNSLDALC 137
Query: 91 EYFGIP-LEGSAHRAMSDVNSLASI 114
+GI + H A+ D LA +
Sbjct: 138 RRYGIDNGHRTKHGALLDSELLAEV 162
>gi|331701432|ref|YP_004398391.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus
buchneri NRRL B-30929]
gi|329128775|gb|AEB73328.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus
buchneri NRRL B-30929]
Length = 945
Score = 37.0 bits (84), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 40/86 (46%), Gaps = 9/86 (10%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPD-NWRFLDTLPLARELMKQNGSVSSKTSLQAL 89
+FVAHN FD PFL EF R P+ +DT+ L++ L+ S LQ L
Sbjct: 87 TVFVAHNVN-FDFPFLNSEFQRVGY--PELQIEAIDTVTLSQILL----PTLSSYRLQDL 139
Query: 90 REYFGIPLEGSAHRAMSDVNSLASIL 115
YF I H A SD + A +L
Sbjct: 140 SSYFNIE-HDHPHTADSDALATAKLL 164
>gi|154487101|ref|ZP_02028508.1| hypothetical protein BIFADO_00941 [Bifidobacterium adolescentis
L2-32]
gi|154084964|gb|EDN84009.1| exonuclease, DNA polymerase III, epsilon subunit family
[Bifidobacterium adolescentis L2-32]
Length = 256
Score = 37.0 bits (84), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 46/109 (42%), Gaps = 13/109 (11%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
P ++ ++P I+++ + + HN FD FL +R M N + +DTL
Sbjct: 149 PTVDQVLPDFIRFIGND-------TLIGHNINEFDAAFLLANTTRLGMRHIGN-KTIDTL 200
Query: 68 PLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILE 116
PL R L + K L + FGI + +HRA D A E
Sbjct: 201 PLDRALYPE----EPKHRLVDIIRRFGI-AQTESHRAADDALQTAQCYE 244
>gi|145635316|ref|ZP_01791019.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittAA]
gi|145267460|gb|EDK07461.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittAA]
Length = 255
Score = 37.0 bits (84), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 16/116 (13%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIP--DNWRFLD 65
P +DL + Y+N A + HNA FDV F+ EF + ++N+ D D
Sbjct: 76 PEFKDLAQDFLDYING-------AELLIHNAP-FDVGFMDYEFRKLNLNVKTDDICLVTD 127
Query: 66 TLPLARELMKQNGSVSSKTSLQALREYFGIP-LEGSAHRAMSDVNSLASILERITS 120
TL +AR++ + +L AL + GI + + H A+ D LA + +T
Sbjct: 128 TLQMARQMYP-----GKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLMMTG 178
>gi|160880751|ref|YP_001559719.1| DNA polymerase III subunit alpha [Clostridium phytofermentans ISDg]
gi|160429417|gb|ABX42980.1| DNA polymerase III, alpha subunit [Clostridium phytofermentans
ISDg]
Length = 1527
Score = 37.0 bits (84), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 43/88 (48%), Gaps = 12/88 (13%)
Query: 29 EIAIFVAHNARRFDVPFLAK--EFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSL 86
E VAHNA FD+ F+ K EF +NIP +DT+ LAR L+ + T
Sbjct: 574 EGCYLVAHNAS-FDIGFITKKAEF----LNIPLTVTSVDTVGLARVLLNHLNNFKLDTVA 628
Query: 87 QALREYFGIPLEGSAHRAMSDVNSLASI 114
+AL I LE + HRA+ D A I
Sbjct: 629 KAL----SISLE-NHHRAVDDAGCTAEI 651
>gi|406026994|ref|YP_006725826.1| DNA-directed DNA polymerase III subunit epsilon [Lactobacillus
buchneri CD034]
gi|405125483|gb|AFS00244.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
buchneri CD034]
Length = 945
Score = 37.0 bits (84), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 40/86 (46%), Gaps = 9/86 (10%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPD-NWRFLDTLPLARELMKQNGSVSSKTSLQAL 89
+FVAHN FD PFL EF R P+ +DT+ L++ L+ S LQ L
Sbjct: 87 TVFVAHNVN-FDFPFLNSEFQRVGY--PELQIEAIDTVTLSQILL----PTLSSYRLQDL 139
Query: 90 REYFGIPLEGSAHRAMSDVNSLASIL 115
YF I H A SD + A +L
Sbjct: 140 SSYFNIE-HDHPHTADSDALATAKLL 164
>gi|366085917|ref|ZP_09452402.1| DNA polymerase III Rad3-related DNA helicase [Lactobacillus zeae
KCTC 3804]
Length = 926
Score = 37.0 bits (84), Expect = 2.9, Method: Composition-based stats.
Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 16/113 (14%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPD-NWRFLDT 66
P +++ P++ + + + +FVAHN FD PFL EF R + +P +DT
Sbjct: 71 PYFDEVAPVLHRLLTN-------TVFVAHNVN-FDYPFLNAEFER--VGLPKLQLEAIDT 120
Query: 67 LPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERIT 119
+ LA+ L+ + S L L Y I + + H+A SD S +L ++T
Sbjct: 121 VELAQVLLPEISSF----RLSDLTAYLSIQHD-NPHQADSDAISTGKLLLQLT 168
>gi|374582452|ref|ZP_09655546.1| DNA polymerase III, alpha chain [Desulfosporosinus youngiae DSM
17734]
gi|374418534|gb|EHQ90969.1| DNA polymerase III, alpha chain [Desulfosporosinus youngiae DSM
17734]
Length = 1448
Score = 37.0 bits (84), Expect = 3.0, Method: Composition-based stats.
Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 12/105 (11%)
Query: 29 EIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQA 88
E ++ VAHNA FD+ FL + ++ +LDTL LA+EL + L
Sbjct: 502 EGSVLVAHNAE-FDMGFLKHNAKVLGYDF--DYTYLDTLSLAKELFPDYKTY----KLGR 554
Query: 89 LREYFGIPLEGSAHRAMSDVNSLASI----LERITSDLNFTLSDL 129
+ + G +E AHRA+ DV++ + LE++ TL D+
Sbjct: 555 IAKNLGFKVE-VAHRALDDVDTTVKVFKVMLEKLKQRGAETLEDI 598
>gi|212551002|ref|YP_002309319.1| DNA polymerase III epsilon subunit [Candidatus Azobacteroides
pseudotrichonymphae genomovar. CFP2]
gi|212549240|dbj|BAG83908.1| DNA polymerase III epsilon subunit [Candidatus Azobacteroides
pseudotrichonymphae genomovar. CFP2]
Length = 258
Score = 37.0 bits (84), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 13/85 (15%)
Query: 35 AHNARRFDVPFLAKEFSRCSMNIPDNW---RFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+N+ RFD+P LA+EF R +++ +W +F+D + + +T L AL+
Sbjct: 92 GYNSNRFDIPILAEEFLRAGIDV--DWTKQKFVDVQTIFHK-------KEPRTLLAALKF 142
Query: 92 YFGIPLEGSAHRAMSDVNSLASILE 116
Y LE +AH A D + +L+
Sbjct: 143 YCNRDLE-NAHSAAEDAKATYEVLK 166
>gi|307610085|emb|CBW99626.1| hypothetical protein LPW_13941 [Legionella pneumophila 130b]
Length = 233
Score = 37.0 bits (84), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 50/110 (45%), Gaps = 16/110 (14%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMN--IPDNWRFLD 65
P +D++ I++V E + + HNA FDV FL E N + D R LD
Sbjct: 68 PLFQDIVTEFIQFV-------EGSELIIHNAP-FDVGFLNSELKHVKWNKTLEDYCRILD 119
Query: 66 TLPLARELMKQNGSVSSKTSLQALREYFGIP-LEGSAHRAMSDVNSLASI 114
TL LARE K G + SL AL + + I H A+ D LA +
Sbjct: 120 TLILARE--KHPG---QRNSLDALCKRYEIDHFNRELHGALLDAEILAYV 164
>gi|54294270|ref|YP_126685.1| hypothetical protein lpl1335 [Legionella pneumophila str. Lens]
gi|53754102|emb|CAH15575.1| hypothetical protein lpl1335 [Legionella pneumophila str. Lens]
Length = 233
Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 50/110 (45%), Gaps = 16/110 (14%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMN--IPDNWRFLD 65
P +D++ I++V E + + HNA FDV FL E N + D R LD
Sbjct: 68 PLFQDIVTEFIQFV-------EGSELIIHNAP-FDVGFLNSELKHVKWNKTLEDYCRILD 119
Query: 66 TLPLARELMKQNGSVSSKTSLQALREYFGIP-LEGSAHRAMSDVNSLASI 114
TL LARE K G + SL AL + + I H A+ D LA +
Sbjct: 120 TLILARE--KHPG---QRNSLDALCKRYEIDHFNRELHGALLDAEILAYV 164
>gi|297806807|ref|XP_002871287.1| exonuclease family protein [Arabidopsis lyrata subsp. lyrata]
gi|297317124|gb|EFH47546.1| exonuclease family protein [Arabidopsis lyrata subsp. lyrata]
Length = 468
Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 12/111 (10%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
I+ HN RFD + + F+ P+ +D+L L L +Q G + + L
Sbjct: 94 IWAGHNILRFDCARIREAFAEIGRQPPEPKGAIDSLGL---LTQQFGRRAGDMKMATLAR 150
Query: 92 YFGIPLEGSAHRAMSDVNSLASILERITSDLNFTLSDLLKTSF-RANFDHS 141
YFG L HR++ DV +L+ + L L++S A+ DHS
Sbjct: 151 YFG--LGNQTHRSLDDVRMNLEVLKYCATVL------FLESSLPYAHVDHS 193
>gi|375256050|ref|YP_005015217.1| putative DNA polymerase III, epsilon subunit [Tannerella forsythia
ATCC 43037]
gi|363407896|gb|AEW21582.1| putative DNA polymerase III, epsilon subunit [Tannerella forsythia
ATCC 43037]
Length = 254
Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 53/101 (52%), Gaps = 12/101 (11%)
Query: 17 VIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWR-FLDTLPLARELMK 75
+ K + S++ ++A F N+ RFD+P LA+EF R ++NI + R F+D + ++ +
Sbjct: 77 IAKSLASQIEGCDLAGF---NSNRFDIPLLAEEFLRANVNIDLSKRKFIDVQTIFHKMEQ 133
Query: 76 QNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILE 116
+ +LQA +++ AH A +D + +L+
Sbjct: 134 R--------TLQAAYKFYCDKELDDAHSAEADTKATYEVLK 166
>gi|54297294|ref|YP_123663.1| hypothetical protein lpp1339 [Legionella pneumophila str. Paris]
gi|53751079|emb|CAH12490.1| hypothetical protein lpp1339 [Legionella pneumophila str. Paris]
Length = 233
Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 50/110 (45%), Gaps = 16/110 (14%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMN--IPDNWRFLD 65
P +D++ I++V E + + HNA FDV FL E N + D R LD
Sbjct: 68 PLFQDIVTEFIQFV-------EGSELIIHNAP-FDVGFLNSELKHVKWNKTLEDYCRILD 119
Query: 66 TLPLARELMKQNGSVSSKTSLQALREYFGIP-LEGSAHRAMSDVNSLASI 114
TL LARE K G + SL AL + + I H A+ D LA +
Sbjct: 120 TLILARE--KHPG---QRNSLDALCKRYEIDHFNRELHGALLDAEILAYV 164
>gi|330829021|ref|YP_004391973.1| DNA polymerase III subunit epsilon [Aeromonas veronii B565]
gi|423210287|ref|ZP_17196841.1| DNA polymerase III, epsilon subunit [Aeromonas veronii AER397]
gi|328804157|gb|AEB49356.1| DNA polymerase III, epsilon subunit [Aeromonas veronii B565]
gi|404616175|gb|EKB13133.1| DNA polymerase III, epsilon subunit [Aeromonas veronii AER397]
Length = 244
Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 9/87 (10%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNI--PDNWRFLDTLPLARELMKQNGSVSSKTSLQA 88
A +AHNA FDV F+ EFS+ +N D DTL +AR+L + +L
Sbjct: 95 AELIAHNAP-FDVSFMDYEFSKLGLNFKTADICTITDTLAMARDLFP-----GKRNNLDV 148
Query: 89 LREYFGIP-LEGSAHRAMSDVNSLASI 114
L + +GI + H A+ D LA +
Sbjct: 149 LCDRYGIDNSHRTLHGALLDAEILADV 175
>gi|170750672|ref|YP_001756932.1| DNA polymerase III subunit epsilon [Methylobacterium radiotolerans
JCM 2831]
gi|170657194|gb|ACB26249.1| DNA polymerase III, epsilon subunit [Methylobacterium radiotolerans
JCM 2831]
Length = 240
Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 48/97 (49%), Gaps = 16/97 (16%)
Query: 28 GEIAIFVA------HNARRFDVPFLAKEFSRCSMNIPDNWRF---LDTLPLARELMKQNG 78
GE+ F+A HNA FDV FL E++R N P + +DTLP+AR K G
Sbjct: 76 GELLAFLADGRLVIHNAP-FDVGFLNMEYARLGANAPPPIQLEDVVDTLPMARR--KHPG 132
Query: 79 SVSSKTSLQALREYFGIP-LEGSAHRAMSDVNSLASI 114
+ + +L AL +GI + H A+ D LA +
Sbjct: 133 AAN---NLDALCARYGIDNTRRTKHGALLDAQILAEV 166
>gi|90018234|gb|ABD83930.1| hypothetical protein [Ictalurus punctatus]
Length = 216
Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 19/100 (19%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWR-----FLDTLPLARELMKQNGSVSSKTSL 86
+ V HN +RFD P L + + N+ ++ +LDTL L+RE+ + K S
Sbjct: 120 VLVGHNCKRFDRPILLRIMT--EFNLLKEFQDVVSAYLDTLLLSREMF-----MLQKYSQ 172
Query: 87 QALREYFGIPLEGS--AHRAMSDVNSLASILE--RITSDL 122
Q L +YF L+ S AH A DV +L + R ++DL
Sbjct: 173 QFLVQYF---LQKSYRAHDATEDVRTLQELFRVWRPSTDL 209
>gi|374613438|ref|ZP_09686204.1| hypothetical protein MyctuDRAFT_6258 [Mycobacterium tusciae JS617]
gi|373546016|gb|EHP72803.1| hypothetical protein MyctuDRAFT_6258 [Mycobacterium tusciae JS617]
Length = 555
Score = 36.6 bits (83), Expect = 3.2, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 32/57 (56%)
Query: 71 RELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITSDLNFTLS 127
+++ + +GS S+ A R Y L GSA R DV S+A+ + +TSDL TL+
Sbjct: 450 QQMRRSDGSQLRIRSVAAARSYLVAELGGSARRDTQDVVSVAAFEKALTSDLRTTLA 506
>gi|375140023|ref|YP_005000672.1| hypothetical protein [Mycobacterium rhodesiae NBB3]
gi|359820644|gb|AEV73457.1| hypothetical protein MycrhN_2890 [Mycobacterium rhodesiae NBB3]
Length = 555
Score = 36.6 bits (83), Expect = 3.2, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 32/57 (56%)
Query: 71 RELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITSDLNFTLS 127
+++ + +GS S+ A R Y L GSA R DV S+A+ + +TSDL TL+
Sbjct: 450 QQMRRSDGSQLRIRSVAAARSYLVAELGGSARRDTQDVVSVAAFEKALTSDLRTTLA 506
>gi|52841614|ref|YP_095413.1| DNA polymerase III subunit epsilon [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|378777249|ref|YP_005185686.1| DNA polymerase III subunit epsilon [Legionella pneumophila subsp.
pneumophila ATCC 43290]
gi|52628725|gb|AAU27466.1| DNA polymerase III, epsilon subunit [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|364508063|gb|AEW51587.1| DNA polymerase III, epsilon subunit [Legionella pneumophila subsp.
pneumophila ATCC 43290]
Length = 251
Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 50/110 (45%), Gaps = 16/110 (14%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMN--IPDNWRFLD 65
P +D++ I++V E + + HNA FDV FL E N + D R LD
Sbjct: 86 PLFQDIVTEFIQFV-------EGSELIIHNAP-FDVGFLNSELKHVKWNKTLEDYCRILD 137
Query: 66 TLPLARELMKQNGSVSSKTSLQALREYFGIP-LEGSAHRAMSDVNSLASI 114
TL LARE K G + SL AL + + I H A+ D LA +
Sbjct: 138 TLILARE--KHPG---QRNSLDALCKRYEIDHFNRELHGALLDAEILAYV 182
>gi|384411693|ref|YP_005621058.1| DNA polymerase III subunit epsilon [Zymomonas mobilis subsp.
mobilis ATCC 10988]
gi|335932067|gb|AEH62607.1| DNA polymerase III, epsilon subunit [Zymomonas mobilis subsp.
mobilis ATCC 10988]
Length = 234
Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 44/93 (47%), Gaps = 7/93 (7%)
Query: 29 EIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQA 88
+++ VAHNA FD FL E +C + R +DTL +AR K G +K +L A
Sbjct: 82 KLSPLVAHNAA-FDFGFLNYELDKCGLPTICMTRMVDTLAIARG--KHPG---AKHTLDA 135
Query: 89 LREYFGIPLEGSA-HRAMSDVNSLASILERITS 120
L +GI H A+ D LA + +T
Sbjct: 136 LCTRYGIDRSHRVKHGALLDAELLAQLYVELTG 168
>gi|339628993|ref|YP_004720636.1| DNA polymerase III PolC [Sulfobacillus acidophilus TPY]
gi|379006869|ref|YP_005256320.1| RNAse T [Sulfobacillus acidophilus DSM 10332]
gi|339286782|gb|AEJ40893.1| DNA polymerase III PolC [Sulfobacillus acidophilus TPY]
gi|361053131|gb|AEW04648.1| RNAse T [Sulfobacillus acidophilus DSM 10332]
Length = 199
Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 19/89 (21%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWR--FLDTLPLARELMKQNGSVSSKTSLQAL 89
I + HNA FD+ FL P W LDT LAR L+ + S+S L
Sbjct: 98 IILIHNAP-FDLAFLP----------PITWPGPVLDTSALARALLHVDESLSR------L 140
Query: 90 REYFGIPLEGSAHRAMSDVNSLASILERI 118
E +GI G+AH A+SD ++ + E++
Sbjct: 141 LERYGIGRRGAAHSAVSDAQAVLDLWEQV 169
>gi|329769168|ref|ZP_08260588.1| DNA polymerase III [Gemella sanguinis M325]
gi|328839387|gb|EGF88965.1| DNA polymerase III [Gemella sanguinis M325]
Length = 1449
Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 7/94 (7%)
Query: 29 EIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQA 88
E I VAHNA+ FD+ FL K F R + +N +DTL ++R K+ + + L
Sbjct: 507 EDDILVAHNAK-FDLGFLDKSFERLGLKNKNNAS-IDTLFISRAENKE----AKRHGLSN 560
Query: 89 LREYFGIPLEGSAHRAMSDVNSLASILERITSDL 122
L + + + L HRA+ D + A I ++ L
Sbjct: 561 LAKLYKVRLV-QHHRAIYDTKATAEIFVKMLDQL 593
>gi|260753374|ref|YP_003226267.1| DNA polymerase III subunit epsilon [Zymomonas mobilis subsp.
mobilis NCIMB 11163]
gi|258552737|gb|ACV75683.1| DNA polymerase III, epsilon subunit [Zymomonas mobilis subsp.
mobilis NCIMB 11163]
Length = 234
Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 44/93 (47%), Gaps = 7/93 (7%)
Query: 29 EIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQA 88
+++ VAHNA FD FL E +C + R +DTL +AR K G +K +L A
Sbjct: 82 KLSPLVAHNAA-FDFGFLNYELDKCGLPTICMTRMVDTLAIARG--KHPG---AKHTLDA 135
Query: 89 LREYFGIPLEGSA-HRAMSDVNSLASILERITS 120
L +GI H A+ D LA + +T
Sbjct: 136 LCTRYGIDRSHRVKHGALLDAELLAQLYVELTG 168
>gi|340349125|ref|ZP_08672149.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella
nigrescens ATCC 33563]
gi|339612691|gb|EGQ17494.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella
nigrescens ATCC 33563]
Length = 284
Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 10/87 (11%)
Query: 33 FVAHNARRFDVPFLAKEFSRCSMNIP-DNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
F N+ RFDVP LA+EF R +N R +D + ++ ++N + A
Sbjct: 90 FAGFNSNRFDVPLLAEEFLRAGINFDFSKCRLIDAQNIYHKMERRNLAA-------AYEF 142
Query: 92 YFGIPLEG--SAHRAMSDVNSLASILE 116
Y G +E +AH+A D + +L+
Sbjct: 143 YCGRKMEDDFTAHKADEDTEATWRVLQ 169
>gi|395764874|ref|ZP_10445494.1| DNA polymerase III, epsilon subunit [Bartonella sp. DB5-6]
gi|395413691|gb|EJF80153.1| DNA polymerase III, epsilon subunit [Bartonella sp. DB5-6]
Length = 235
Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 48/116 (41%), Gaps = 9/116 (7%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
A +AHNA FD+ FL E R + + LDTL +AR SL L
Sbjct: 84 ATMIAHNAS-FDIGFLNAELERANKPLISVDNILDTLAMARRKFPM-----GPNSLDVLC 137
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILERITSDLNFTLSDLLKTSFRANFDHSKKNKK 146
+ FGI ++HR + A IL + +L +L R + D +N K
Sbjct: 138 KRFGID---NSHRVLHGALLDAEILADVYIELIGGKQGILGFDNRGSIDEDTQNNK 190
>gi|423207434|ref|ZP_17193990.1| DNA polymerase III, epsilon subunit [Aeromonas veronii AMC34]
gi|404620501|gb|EKB17398.1| DNA polymerase III, epsilon subunit [Aeromonas veronii AMC34]
Length = 244
Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 9/87 (10%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNI--PDNWRFLDTLPLARELMKQNGSVSSKTSLQA 88
A +AHNA FDV F+ EFS+ +N D DTL +AR+L + +L
Sbjct: 95 AELIAHNAP-FDVSFMDYEFSKLGLNFKTADICTITDTLAMARDLFP-----GKRNNLDV 148
Query: 89 LREYFGIP-LEGSAHRAMSDVNSLASI 114
L + +GI + H A+ D LA +
Sbjct: 149 LCDRYGIDNSHRTLHGALLDAEILADV 175
>gi|150005410|ref|YP_001300154.1| DNA polymerase III subunit epsilon [Bacteroides vulgatus ATCC 8482]
gi|212694908|ref|ZP_03303036.1| hypothetical protein BACDOR_04445 [Bacteroides dorei DSM 17855]
gi|265750418|ref|ZP_06086481.1| DNA Pol III epsilon chain [Bacteroides sp. 3_1_33FAA]
gi|294777188|ref|ZP_06742645.1| exonuclease [Bacteroides vulgatus PC510]
gi|319640629|ref|ZP_07995346.1| DNA Pol III epsilon chain [Bacteroides sp. 3_1_40A]
gi|345516246|ref|ZP_08795739.1| DNA Pol III epsilon chain [Bacteroides dorei 5_1_36/D4]
gi|345517902|ref|ZP_08797363.1| DNA Pol III epsilon chain [Bacteroides sp. 4_3_47FAA]
gi|423227804|ref|ZP_17214210.1| hypothetical protein HMPREF1063_00030 [Bacteroides dorei
CL02T00C15]
gi|423238936|ref|ZP_17220052.1| hypothetical protein HMPREF1065_00675 [Bacteroides dorei
CL03T12C01]
gi|423243066|ref|ZP_17224142.1| hypothetical protein HMPREF1064_00348 [Bacteroides dorei
CL02T12C06]
gi|423311675|ref|ZP_17289612.1| hypothetical protein HMPREF1058_00224 [Bacteroides vulgatus
CL09T03C04]
gi|149933834|gb|ABR40532.1| DNA Pol III epsilon chain [Bacteroides vulgatus ATCC 8482]
gi|212662468|gb|EEB23042.1| exonuclease [Bacteroides dorei DSM 17855]
gi|229433990|gb|EEO44067.1| DNA Pol III epsilon chain [Bacteroides dorei 5_1_36/D4]
gi|263237314|gb|EEZ22764.1| DNA Pol III epsilon chain [Bacteroides sp. 3_1_33FAA]
gi|294449057|gb|EFG17600.1| exonuclease [Bacteroides vulgatus PC510]
gi|317387750|gb|EFV68612.1| DNA Pol III epsilon chain [Bacteroides sp. 3_1_40A]
gi|345457570|gb|EET17387.2| DNA Pol III epsilon chain [Bacteroides sp. 4_3_47FAA]
gi|392637551|gb|EIY31417.1| hypothetical protein HMPREF1063_00030 [Bacteroides dorei
CL02T00C15]
gi|392645941|gb|EIY39660.1| hypothetical protein HMPREF1064_00348 [Bacteroides dorei
CL02T12C06]
gi|392647347|gb|EIY41048.1| hypothetical protein HMPREF1065_00675 [Bacteroides dorei
CL03T12C01]
gi|392690320|gb|EIY83590.1| hypothetical protein HMPREF1058_00224 [Bacteroides vulgatus
CL09T03C04]
Length = 258
Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 55/113 (48%), Gaps = 14/113 (12%)
Query: 37 NARRFDVPFLAKEFSRCSMNIPDNWR-FLDTLPLARELMKQNGSVSSKTSLQALREYFGI 95
N+ RFD+P LA+EF R ++I R F+D + +L +T A + Y G
Sbjct: 94 NSNRFDIPVLAEEFLRAGVDIDMMKRKFIDVQVIYHKL-------EQRTLSAAYKFYCGK 146
Query: 96 PLEGSAHRAMSDVNS----LASILERITSDLNFTLSDLLK-TSFRANFDHSKK 143
LE AH A +D + L S L+R +L ++ L + +SF N D + +
Sbjct: 147 NLE-DAHTAEADTRATYEVLKSQLDRYPEELQNDMAFLAEYSSFNKNVDFAGR 198
>gi|307720491|ref|YP_003891631.1| exonuclease RNase T and DNA polymerase III [Sulfurimonas
autotrophica DSM 16294]
gi|306978584|gb|ADN08619.1| Exonuclease RNase T and DNA polymerase III [Sulfurimonas
autotrophica DSM 16294]
Length = 269
Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 12/110 (10%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
A+FVAH+ + FD F++K + + P R L +L LA + VS + +L L
Sbjct: 147 AVFVAHDVK-FDYSFISKSLQKIGLE-PLLNRSLCSLALA-----ERTVVSYRYALSYLN 199
Query: 91 EYFGIPLEGSAHRAMSDVNSLASI----LERITSDLNFTLSDLLKTSFRA 136
E + + HRAMSDV + + L+ + ++ T+ DL+K S A
Sbjct: 200 ETLKLNPKARHHRAMSDVITTYGLFLLSLDNLDENIK-TVEDLIKFSKEA 248
>gi|397677024|ref|YP_006518562.1| DNA polymerase III subunit epsilon [Zymomonas mobilis subsp.
mobilis ATCC 29191]
gi|395397713|gb|AFN57040.1| DNA polymerase III, epsilon subunit [Zymomonas mobilis subsp.
mobilis ATCC 29191]
Length = 234
Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 45/99 (45%), Gaps = 7/99 (7%)
Query: 29 EIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQA 88
+++ VAHNA FD FL E +C + R +DTL +AR K G +K +L A
Sbjct: 82 KLSPLVAHNAA-FDFGFLNYELDKCGLPTICMTRMVDTLAIARG--KHPG---AKHTLDA 135
Query: 89 LREYFGIPLEGSA-HRAMSDVNSLASILERITSDLNFTL 126
L +GI H A+ D LA + +T L
Sbjct: 136 LCTRYGIDRSHRVKHGALLDAELLAQLYVELTGGRQIGL 174
>gi|344924223|ref|ZP_08777684.1| DNA polymerase III epsilon subunit [Candidatus Odyssella
thessalonicensis L13]
Length = 236
Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 50/102 (49%), Gaps = 9/102 (8%)
Query: 15 PIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSR-CSMNIPDNWRFLDTLPLAREL 73
P+ + V+ L + + V HNA FD+ F+ E R C +P R +DT+ LAR+
Sbjct: 68 PLFVHVVDDFLEFIQDSPLVIHNAA-FDMGFINAELERLCRHPLP-LIRTIDTVQLARQ- 124
Query: 74 MKQNGSVSSKTSLQALREYFGIPLEGSA-HRAMSDVNSLASI 114
K G S SL AL FGI L H A+ D LAS+
Sbjct: 125 -KYPG---SPASLDALCRRFGIDLSARVKHGALLDAELLASV 162
>gi|237710744|ref|ZP_04541225.1| DNA Pol III epsilon chain [Bacteroides sp. 9_1_42FAA]
gi|229455466|gb|EEO61187.1| DNA Pol III epsilon chain [Bacteroides sp. 9_1_42FAA]
Length = 260
Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 55/113 (48%), Gaps = 14/113 (12%)
Query: 37 NARRFDVPFLAKEFSRCSMNIPDNWR-FLDTLPLARELMKQNGSVSSKTSLQALREYFGI 95
N+ RFD+P LA+EF R ++I R F+D + +L +T A + Y G
Sbjct: 96 NSNRFDIPVLAEEFLRAGVDIDMMKRKFIDVQVIYHKL-------EQRTLSAAYKFYCGK 148
Query: 96 PLEGSAHRAMSDVNS----LASILERITSDLNFTLSDLLK-TSFRANFDHSKK 143
LE AH A +D + L S L+R +L ++ L + +SF N D + +
Sbjct: 149 NLE-DAHTAEADTRATYEVLKSQLDRYPEELQNDMAFLAEYSSFNKNVDFAGR 200
>gi|182680101|ref|YP_001834247.1| DNA polymerase III subunit epsilon [Beijerinckia indica subsp.
indica ATCC 9039]
gi|182635984|gb|ACB96758.1| DNA polymerase III, epsilon subunit [Beijerinckia indica subsp.
indica ATCC 9039]
Length = 236
Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 49/112 (43%), Gaps = 7/112 (6%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
A VAHNA FD+ FL E + D+ R +DTL LAR + G + SL AL
Sbjct: 84 AKLVAHNAA-FDMRFLNAELGLLGLEPIDSERVVDTLALARR--RHPG---ASNSLDALC 137
Query: 91 EYFGIP-LEGSAHRAMSDVNSLASILERITSDLNFTLSDLLKTSFRANFDHS 141
+GI + H A+ D LA + + L+ T+ R + H
Sbjct: 138 NRYGIDNTRRTKHGALLDSEILADVYAELLGGRQAALTFETATALRQDNTHQ 189
>gi|255068237|ref|ZP_05320092.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
sicca ATCC 29256]
gi|255047507|gb|EET42971.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
sicca ATCC 29256]
Length = 449
Score = 36.6 bits (83), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 8/87 (9%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
++ VAHN+R FD FL EF R ++ L T+ L+R L Q K +L ++
Sbjct: 78 SLIVAHNSR-FDYTFLRHEFYRAGIDFAAP--ALCTVQLSRRLYPQ----FYKHNLDSII 130
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILER 117
GI + HRA++DV +LA LE
Sbjct: 131 SRMGIQTD-DRHRALADVLALADYLEH 156
>gi|56550935|ref|YP_161774.1| DNA polymerase III subunit epsilon [Zymomonas mobilis subsp.
mobilis ZM4]
gi|56542509|gb|AAV88663.1| DNA polymerase III, epsilon subunit [Zymomonas mobilis subsp.
mobilis ZM4]
Length = 234
Score = 36.6 bits (83), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 44/93 (47%), Gaps = 7/93 (7%)
Query: 29 EIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQA 88
+++ VAHNA FD FL E +C + R +DTL +AR K G +K +L A
Sbjct: 82 KLSPLVAHNAA-FDFGFLNYELDKCGLPTICMTRMVDTLAIARG--KHPG---AKHTLDA 135
Query: 89 LREYFGIPLEGSA-HRAMSDVNSLASILERITS 120
L +GI H A+ D LA + +T
Sbjct: 136 LCTRYGIDRSHRVKHGALLDAELLAQLYVELTG 168
>gi|53714270|ref|YP_100262.1| DNA polymerase III subunit epsilon [Bacteroides fragilis YCH46]
gi|60682326|ref|YP_212470.1| DNA polymerase III subunit epsilon [Bacteroides fragilis NCTC 9343]
gi|265766238|ref|ZP_06094279.1| DNA polymerase subunit III epsilon [Bacteroides sp. 2_1_16]
gi|336411879|ref|ZP_08592339.1| hypothetical protein HMPREF1018_04357 [Bacteroides sp. 2_1_56FAA]
gi|375359119|ref|YP_005111891.1| putative DNA polymerase III subunit epsilon [Bacteroides fragilis
638R]
gi|383119047|ref|ZP_09939786.1| hypothetical protein BSHG_1762 [Bacteroides sp. 3_2_5]
gi|423250628|ref|ZP_17231643.1| hypothetical protein HMPREF1066_02653 [Bacteroides fragilis
CL03T00C08]
gi|423253954|ref|ZP_17234884.1| hypothetical protein HMPREF1067_01528 [Bacteroides fragilis
CL03T12C07]
gi|423260813|ref|ZP_17241715.1| hypothetical protein HMPREF1055_03992 [Bacteroides fragilis
CL07T00C01]
gi|423266950|ref|ZP_17245932.1| hypothetical protein HMPREF1056_03619 [Bacteroides fragilis
CL07T12C05]
gi|423271195|ref|ZP_17250166.1| hypothetical protein HMPREF1079_03248 [Bacteroides fragilis
CL05T00C42]
gi|423276650|ref|ZP_17255590.1| hypothetical protein HMPREF1080_04243 [Bacteroides fragilis
CL05T12C13]
gi|423283775|ref|ZP_17262659.1| hypothetical protein HMPREF1204_02197 [Bacteroides fragilis HMW
615]
gi|52217135|dbj|BAD49728.1| DNA polymerase III epsilon chain [Bacteroides fragilis YCH46]
gi|60493760|emb|CAH08550.1| putative DNA polymerase III epsilon chain [Bacteroides fragilis
NCTC 9343]
gi|251946251|gb|EES86628.1| hypothetical protein BSHG_1762 [Bacteroides sp. 3_2_5]
gi|263253906|gb|EEZ25371.1| DNA polymerase subunit III epsilon [Bacteroides sp. 2_1_16]
gi|301163800|emb|CBW23355.1| putative DNA polymerase III epsilon chain [Bacteroides fragilis
638R]
gi|335940223|gb|EGN02091.1| hypothetical protein HMPREF1018_04357 [Bacteroides sp. 2_1_56FAA]
gi|387774574|gb|EIK36684.1| hypothetical protein HMPREF1055_03992 [Bacteroides fragilis
CL07T00C01]
gi|392651585|gb|EIY45247.1| hypothetical protein HMPREF1066_02653 [Bacteroides fragilis
CL03T00C08]
gi|392654512|gb|EIY48159.1| hypothetical protein HMPREF1067_01528 [Bacteroides fragilis
CL03T12C07]
gi|392696364|gb|EIY89559.1| hypothetical protein HMPREF1080_04243 [Bacteroides fragilis
CL05T12C13]
gi|392699119|gb|EIY92301.1| hypothetical protein HMPREF1079_03248 [Bacteroides fragilis
CL05T00C42]
gi|392699484|gb|EIY92662.1| hypothetical protein HMPREF1056_03619 [Bacteroides fragilis
CL07T12C05]
gi|404580321|gb|EKA85030.1| hypothetical protein HMPREF1204_02197 [Bacteroides fragilis HMW
615]
Length = 257
Score = 36.6 bits (83), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 18/115 (15%)
Query: 37 NARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREYFGIP 96
N+ RFD+P LA+EF R ++I + R + + M+Q +T A + Y G
Sbjct: 94 NSNRFDIPVLAEEFLRAGVDIDMSKRKFVDVQVIFHKMEQ------RTLTAAYKFYCGRN 147
Query: 97 LEGSAHRAMSDVNSLASIL--------ERITSDLNFTLSDLLKTSFRANFDHSKK 143
LE AH A +D + +L E + +D++F L+D +S+ N D + +
Sbjct: 148 LE-DAHTAEADTRATYEVLMAQLDRYPEELQNDMSF-LADY--SSYNKNVDFAGR 198
>gi|260061966|ref|YP_003195046.1| DNA polymerase III subunit epsilon [Robiginitalea biformata
HTCC2501]
gi|88783528|gb|EAR14699.1| DNA polymerase III, epsilon subunit [Robiginitalea biformata
HTCC2501]
Length = 456
Score = 36.6 bits (83), Expect = 3.8, Method: Composition-based stats.
Identities = 33/110 (30%), Positives = 49/110 (44%), Gaps = 15/110 (13%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
P ++ P + + + R +FVAH+ FD P + KEF RC ++ + L T+
Sbjct: 65 PDFSEIAPKIDAFSSGR-------VFVAHSVN-FDYPIVRKEFERCGLDF--GRKKLCTV 114
Query: 68 PLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILER 117
L+R + S SL L IPL HRA D + A +L R
Sbjct: 115 RLSRRVFPGLRSY----SLGKLCRSLEIPLS-DRHRAAGDARATALLLLR 159
>gi|443243600|ref|YP_007376825.1| exonuclease, RNase T and DNA polymerase III [Nonlabens dokdonensis
DSW-6]
gi|442800999|gb|AGC76804.1| exonuclease, RNase T and DNA polymerase III [Nonlabens dokdonensis
DSW-6]
Length = 182
Score = 36.6 bits (83), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Query: 41 FDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREYFGIPLEGS 100
+D+ + K+ M P ++ L E+ G V K +L L PLEG+
Sbjct: 104 YDLNMMKKQCKMRGMEYPLAQNHINVKTLFSEVKGLKGKVGMKGALGILN----FPLEGT 159
Query: 101 AHRAMSDVNSLASILE 116
HR + D N++A IL+
Sbjct: 160 HHRGVDDANNIAKILD 175
>gi|405967143|gb|EKC32343.1| Putative transcription factor PML [Crassostrea gigas]
Length = 792
Score = 36.6 bits (83), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 54/116 (46%), Gaps = 21/116 (18%)
Query: 7 VPRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFS------RCSMNIPDN 60
VP E LI + +++S P I V HN + FD+P L R S NI
Sbjct: 590 VPPFEALIAF-LNFLDSFNHP----IIVGHNIQSFDLPILRHHLGSSNLLERFSGNITG- 643
Query: 61 WRFLDTLPLARELMKQN--GSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASI 114
FLDTL ++++ +K + +T +Q L + E AH AM+DV SL +
Sbjct: 644 --FLDTLKISKKSLKDVNLSNYKQETLVQTL-----LGEEYEAHNAMADVTSLEKL 692
>gi|398938907|ref|ZP_10668174.1| DNA polymerase III, alpha subunit (gram-positive type) [Pseudomonas
sp. GM41(2012)]
gi|398164901|gb|EJM53026.1| DNA polymerase III, alpha subunit (gram-positive type) [Pseudomonas
sp. GM41(2012)]
Length = 203
Score = 36.6 bits (83), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 46/106 (43%), Gaps = 10/106 (9%)
Query: 17 VIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQ 76
V+ VN +G I +AHNA FD F E R N F +L LAR LM
Sbjct: 73 VMNEVNEFVG---ITPLLAHNAA-FDQKFWDFELGRIKRTRLQN--FACSLLLARRLM-- 124
Query: 77 NGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITSDL 122
+ L L + +P G AHRAM+D A++ + +L
Sbjct: 125 --PAAPNHKLGTLTTFANLPDTGKAHRAMADAEMAANLTAHLAQEL 168
>gi|288803395|ref|ZP_06408828.1| exonuclease [Prevotella melaninogenica D18]
gi|288334215|gb|EFC72657.1| exonuclease [Prevotella melaninogenica D18]
Length = 284
Score = 36.6 bits (83), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 10/87 (11%)
Query: 33 FVAHNARRFDVPFLAKEFSRCSMNIP-DNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
F +N+ RFDVP LA+EF R ++ R +D + ++ ++N + + K
Sbjct: 90 FAGYNSNRFDVPMLAEEFLRAGVDFDFSKCRLIDAQNIYHKMERRNLAAAYKF------- 142
Query: 92 YFGIPLEG--SAHRAMSDVNSLASILE 116
Y G +E AH+A D + +L+
Sbjct: 143 YCGRKMEDDFEAHKADQDTEATWRVLQ 169
>gi|398996131|ref|ZP_10698993.1| DNA polymerase III, alpha subunit (gram-positive type) [Pseudomonas
sp. GM21]
gi|398127667|gb|EJM17073.1| DNA polymerase III, alpha subunit (gram-positive type) [Pseudomonas
sp. GM21]
Length = 203
Score = 36.6 bits (83), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 46/106 (43%), Gaps = 10/106 (9%)
Query: 17 VIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQ 76
V+ VN +G I +AHNA FD F E R N F +L LAR LM
Sbjct: 73 VMNEVNEFVG---ITPLLAHNAA-FDQKFWDFELGRIKRTRLQN--FACSLLLARRLM-- 124
Query: 77 NGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITSDL 122
+ L L + +P G AHRAM+D A++ + +L
Sbjct: 125 --PAAPNHKLGTLTTFANLPDTGKAHRAMADAEMAANLTAHLAQEL 168
>gi|429330591|ref|ZP_19211377.1| DNA polymerase IIIsubunit epsilon [Pseudomonas putida CSV86]
gi|428764701|gb|EKX86830.1| DNA polymerase IIIsubunit epsilon [Pseudomonas putida CSV86]
Length = 201
Score = 36.6 bits (83), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 13/103 (12%)
Query: 29 EIAIFV------AHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSS 82
E+A FV AHNA FD F E SR N ++ + L ++ +
Sbjct: 76 EVAEFVGDTPLLAHNAA-FDQKFWDYELSRIGRNRSQSF------ACSLLLSRRLLPAAP 128
Query: 83 KTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITSDLNFT 125
L L + G+P G+AHRAM+D A++L+ + +L T
Sbjct: 129 NHKLGTLTRWAGLPDTGTAHRAMADAEMAANLLQHLVGELRQT 171
>gi|411009925|ref|ZP_11386254.1| DNA polymerase III subunit epsilon [Aeromonas aquariorum AAK1]
gi|423196036|ref|ZP_17182619.1| DNA polymerase III, epsilon subunit [Aeromonas hydrophila SSU]
gi|404632837|gb|EKB29439.1| DNA polymerase III, epsilon subunit [Aeromonas hydrophila SSU]
Length = 244
Score = 36.6 bits (83), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 9/87 (10%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNI--PDNWRFLDTLPLARELMKQNGSVSSKTSLQA 88
A +AHNA FDV F+ EFS+ +N D DTL +AR+L + +L
Sbjct: 95 AELIAHNAP-FDVSFMDYEFSKLGLNFKTADICGITDTLAMARDLFP-----GKRNNLDV 148
Query: 89 LREYFGIP-LEGSAHRAMSDVNSLASI 114
L + +GI + H A+ D LA +
Sbjct: 149 LCDRYGIDNSHRTLHGALLDAEILADV 175
>gi|345883431|ref|ZP_08834874.1| hypothetical protein HMPREF0666_01050 [Prevotella sp. C561]
gi|345043722|gb|EGW47775.1| hypothetical protein HMPREF0666_01050 [Prevotella sp. C561]
Length = 284
Score = 36.6 bits (83), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 10/87 (11%)
Query: 33 FVAHNARRFDVPFLAKEFSRCSMNIP-DNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
F N+ RFDVP LA+EF R ++ R +D + ++ ++N + + K
Sbjct: 90 FAGFNSNRFDVPMLAEEFLRAGVDFDFSKCRLIDAQNIYHKMERRNLAAAYKF------- 142
Query: 92 YFGIPLEG--SAHRAMSDVNSLASILE 116
Y G +E AHRA D + +L+
Sbjct: 143 YCGRKMEDDFEAHRADQDTEATWRVLQ 169
>gi|167041229|gb|ABZ05986.1| putative exonuclease [uncultured marine microorganism
HF4000_001N02]
Length = 299
Score = 36.6 bits (83), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 8/87 (9%)
Query: 29 EIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQA 88
E A+ V HN FD FL E R + P +DT LAR+L + + +L
Sbjct: 116 EDAVIVGHNISNFDWRFLELECMRAGVETPIPRAIVDTYSLARKL-----RIPGRRTLGV 170
Query: 89 LREYFGIPLEGSAHRAMSDVNSLASIL 115
L + I + G AH A D ++ AS+L
Sbjct: 171 LCARYDISI-GRAHSA--DADAGASLL 194
>gi|260773739|ref|ZP_05882654.1| DNA polymerase III epsilon subunit [Vibrio metschnikovii CIP 69.14]
gi|260610700|gb|EEX35904.1| DNA polymerase III epsilon subunit [Vibrio metschnikovii CIP 69.14]
Length = 237
Score = 36.2 bits (82), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 15/111 (13%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWR----FLDTLPLARELMKQNGSVSSKTSLQ 87
+ +AH A + K+F R +++ D+ FLDT+ L R L+K G + L
Sbjct: 134 VVIAHGAE------IEKQFLRQLLSLEDSLPLPLIFLDTMRLERSLIKYRGIMYPDLRLA 187
Query: 88 ALREYFGIPLEGSAHRAMSDVNSLA----SILERITSDLNFTLSDLLKTSF 134
+RE G+P AH A +DV + +++E I D L L+ S
Sbjct: 188 HIREQKGLP-PYLAHNAFADVVATGELFLALVEEICEDQTPCLGPLVLRSL 237
>gi|300715435|ref|YP_003740238.1| DNA polymerase III subunit epsilon [Erwinia billingiae Eb661]
gi|299061271|emb|CAX58380.1| DNA polymerase III epsilon subunit [Erwinia billingiae Eb661]
Length = 244
Score = 36.2 bits (82), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 17/117 (14%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDN---WRFL 64
P D+ ++Y++ A V HNA FD+ F+ EF++ NIP R
Sbjct: 78 PTFADIADGFLEYIDG-------AELVIHNAS-FDIGFMDYEFAKLGRNIPKTETFCRIT 129
Query: 65 DTLPLARELMKQNGSVSSKTSLQALREYFGIP-LEGSAHRAMSDVNSLASILERITS 120
D+L +AR++ + SL AL + I + + H A+ D LA + +T
Sbjct: 130 DSLAMARKMFP-----GKRNSLDALCSRYEIDNTKRTLHGALLDSEILAEVFLAMTG 181
>gi|351731888|ref|ZP_08949579.1| DNA-directed DNA polymerase [Acidovorax radicis N35]
Length = 203
Score = 36.2 bits (82), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 45/92 (48%), Gaps = 7/92 (7%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
A VAHNA FD F E + + P F T+ L+R L Q S L L
Sbjct: 84 APMVAHNAS-FDSKFWQAELALAGLPAPQP--FACTVLLSRRLYPQAPS----HKLGTLV 136
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILERITSDL 122
+Y G+P G AHRA++D A++L R+ DL
Sbjct: 137 DYHGLPRTGQAHRALADAEMAAALLARMQHDL 168
>gi|421187339|ref|ZP_15644699.1| Rad3-related DNA helicase [Oenococcus oeni AWRIB419]
gi|399969138|gb|EJO03561.1| Rad3-related DNA helicase [Oenococcus oeni AWRIB419]
Length = 489
Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 7/92 (7%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
+FVAHN R +D P+L EF+R M ++DT+ LA+ + S L L
Sbjct: 86 TVFVAHNVR-YDFPYLNGEFARIKMRRL-RLEYVDTVQLAQIVFPTMNSY----KLDELV 139
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILERITSDL 122
GI L HRA D ++ A + +I L
Sbjct: 140 SKLGINLP-RHHRADQDASATAQLFLKIHEHL 170
>gi|429738227|ref|ZP_19272041.1| exonuclease [Prevotella saccharolytica F0055]
gi|429160676|gb|EKY03130.1| exonuclease [Prevotella saccharolytica F0055]
Length = 284
Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 10/86 (11%)
Query: 33 FVAHNARRFDVPFLAKEFSRCSMNIP-DNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
F N+ FD+P LA+EF R ++ N R +D + ++ ++N + + K
Sbjct: 90 FAGFNSNHFDIPMLAEEFLRAGIDFDFSNCRLIDAQTIFHKMERRNLAAAYKF------- 142
Query: 92 YFGIPLEG--SAHRAMSDVNSLASIL 115
Y G +E +AHRA D + +L
Sbjct: 143 YCGRKMEDDFAAHRADQDAEATYRVL 168
>gi|417991507|ref|ZP_12631913.1| exonuclease [Lactobacillus casei A2-362]
gi|410529641|gb|EKQ04438.1| exonuclease [Lactobacillus casei A2-362]
Length = 172
Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 42 DVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREYFGIPLEGSA 101
D + + F + S IP NW+F+D +++++ S ++ LQ L GIP A
Sbjct: 93 DAGRIRETFKQGSHGIPKNWKFIDIA----DIVEKQYSFNATPPLQGLANVLGIP-ANRA 147
Query: 102 HRAMSDVNSLASILERITS 120
H A+ D +++ + S
Sbjct: 148 HNALDDCLRTFGVIKELES 166
>gi|334704346|ref|ZP_08520212.1| DNA polymerase III, epsilon subunit [Aeromonas caviae Ae398]
Length = 244
Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 9/87 (10%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNI--PDNWRFLDTLPLARELMKQNGSVSSKTSLQA 88
A +AHNA FDV F+ EFS+ +N D DTL +AR+L + +L
Sbjct: 95 AELIAHNAP-FDVSFMDYEFSKLGLNFKTADICGITDTLAMARDLFP-----GKRNNLDV 148
Query: 89 LREYFGIP-LEGSAHRAMSDVNSLASI 114
L + +GI + H A+ D LA +
Sbjct: 149 LCDRYGIDNSHRTLHGALLDAEILADV 175
>gi|327265893|ref|XP_003217742.1| PREDICTED: three prime repair exonuclease 1-like [Anolis
carolinensis]
Length = 329
Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 45/107 (42%), Gaps = 12/107 (11%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSS--------- 82
VAHN +D P L E S ++ D DTL + L K+N +S
Sbjct: 121 CLVAHNGCSYDFPLLKAELSALGLSGLDGIYCADTLKAMKALDKENIQLSQFIYESKQCG 180
Query: 83 ---KTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITSDLNFTL 126
K LQ + F ++H A DV +L +I ++ +DL + +
Sbjct: 181 KKMKYGLQDMYFRFYKAYPPNSHSAEGDVITLINIFQQSATDLMWWM 227
>gi|302782960|ref|XP_002973253.1| hypothetical protein SELMODRAFT_58287 [Selaginella moellendorffii]
gi|300159006|gb|EFJ25627.1| hypothetical protein SELMODRAFT_58287 [Selaginella moellendorffii]
Length = 175
Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
++ HN RFD + + F+ P+ +DT PL R K G + + L
Sbjct: 88 VWAGHNILRFDNLRIKEAFASIGRAGPEAAGHIDTFPLLR---KSFGQRAGNLKMATLAS 144
Query: 92 YFGIPLEGSAHRAMSDV 108
YFG L HR+++DV
Sbjct: 145 YFG--LGKQEHRSLADV 159
>gi|302823961|ref|XP_002993628.1| hypothetical protein SELMODRAFT_48207 [Selaginella moellendorffii]
gi|300138556|gb|EFJ05320.1| hypothetical protein SELMODRAFT_48207 [Selaginella moellendorffii]
Length = 175
Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
++ HN RFD + + F+ P+ +DT PL R K G + + L
Sbjct: 88 VWAGHNILRFDNLRIKEAFASIGRAGPEAAGHIDTFPLLR---KSFGQRAGNLKMATLAS 144
Query: 92 YFGIPLEGSAHRAMSDV 108
YFG L HR+++DV
Sbjct: 145 YFG--LGKQEHRSLADV 159
>gi|337265423|ref|YP_004609478.1| DNA polymerase III subunit epsilon [Mesorhizobium opportunistum
WSM2075]
gi|336025733|gb|AEH85384.1| DNA polymerase III, epsilon subunit [Mesorhizobium opportunistum
WSM2075]
Length = 241
Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 44/101 (43%), Gaps = 7/101 (6%)
Query: 15 PIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELM 74
P + V L + A VAHNA FD+ FL EF R + D +DTL LAR
Sbjct: 68 PTFAEIVEEWLAFTDGAKLVAHNAT-FDIGFLNVEFGRLGHPVIDPGLVVDTLALARRKH 126
Query: 75 KQNGSVSSKTSLQALREYFGIP-LEGSAHRAMSDVNSLASI 114
SL AL +GI + + H A+ D LA +
Sbjct: 127 PMG-----PNSLDALCRRYGIDNAKRTKHGALLDSELLAEV 162
>gi|116491119|ref|YP_810663.1| Rad3-related DNA helicase [Oenococcus oeni PSU-1]
gi|118586913|ref|ZP_01544346.1| DNA helicase, Rad3-related family [Oenococcus oeni ATCC BAA-1163]
gi|290890627|ref|ZP_06553698.1| hypothetical protein AWRIB429_1088 [Oenococcus oeni AWRIB429]
gi|419757642|ref|ZP_14283973.1| Rad3-related DNA helicase [Oenococcus oeni AWRIB304]
gi|419857631|ref|ZP_14380336.1| Rad3-related DNA helicase [Oenococcus oeni AWRIB202]
gi|419858351|ref|ZP_14381024.1| Rad3-related DNA helicase [Oenococcus oeni DSM 20252 = AWRIB129]
gi|421184985|ref|ZP_15642399.1| Rad3-related DNA helicase [Oenococcus oeni AWRIB318]
gi|421187217|ref|ZP_15644593.1| Rad3-related DNA helicase [Oenococcus oeni AWRIB418]
gi|421189780|ref|ZP_15647094.1| Rad3-related DNA helicase [Oenococcus oeni AWRIB422]
gi|421190763|ref|ZP_15648047.1| Rad3-related DNA helicase [Oenococcus oeni AWRIB548]
gi|421193717|ref|ZP_15650963.1| Rad3-related DNA helicase [Oenococcus oeni AWRIB553]
gi|421194810|ref|ZP_15652026.1| Rad3-related DNA helicase [Oenococcus oeni AWRIB568]
gi|421196012|ref|ZP_15653204.1| Rad3-related DNA helicase [Oenococcus oeni AWRIB576]
gi|116091844|gb|ABJ56998.1| 3'-5' exonuclease domain and Rad3-related DNA helicase [Oenococcus
oeni PSU-1]
gi|118432640|gb|EAV39373.1| DNA helicase, Rad3-related family [Oenococcus oeni ATCC BAA-1163]
gi|290479755|gb|EFD88408.1| hypothetical protein AWRIB429_1088 [Oenococcus oeni AWRIB429]
gi|399905600|gb|EJN93037.1| Rad3-related DNA helicase [Oenococcus oeni AWRIB304]
gi|399964044|gb|EJN98699.1| Rad3-related DNA helicase [Oenococcus oeni AWRIB418]
gi|399965432|gb|EJO00005.1| Rad3-related DNA helicase [Oenococcus oeni AWRIB318]
gi|399971876|gb|EJO06115.1| Rad3-related DNA helicase [Oenococcus oeni AWRIB553]
gi|399972870|gb|EJO07069.1| Rad3-related DNA helicase [Oenococcus oeni AWRIB422]
gi|399973459|gb|EJO07624.1| Rad3-related DNA helicase [Oenococcus oeni AWRIB548]
gi|399977203|gb|EJO11194.1| Rad3-related DNA helicase [Oenococcus oeni AWRIB568]
gi|399978166|gb|EJO12127.1| Rad3-related DNA helicase [Oenococcus oeni AWRIB576]
gi|410497615|gb|EKP89086.1| Rad3-related DNA helicase [Oenococcus oeni AWRIB202]
gi|410498787|gb|EKP90232.1| Rad3-related DNA helicase [Oenococcus oeni DSM 20252 = AWRIB129]
Length = 489
Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 7/92 (7%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
+FVAHN R +D P+L EF+R M ++DT+ LA+ + S L L
Sbjct: 86 TVFVAHNVR-YDFPYLNGEFARIKMRRL-RLEYVDTVQLAQIVFPTMNSY----KLDELV 139
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILERITSDL 122
GI L HRA D ++ A + +I L
Sbjct: 140 SKLGINLP-RHHRADQDASATAQLFLKIHEHL 170
>gi|346310802|ref|ZP_08852814.1| hypothetical protein HMPREF9452_00683 [Collinsella tanakaei YIT
12063]
gi|345897050|gb|EGX66981.1| hypothetical protein HMPREF9452_00683 [Collinsella tanakaei YIT
12063]
Length = 503
Score = 36.2 bits (82), Expect = 4.3, Method: Composition-based stats.
Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 5/102 (4%)
Query: 2 VNRSYVPRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNW 61
V R ++ +M D VI ++ L ++ F A RFD PF+ + +N W
Sbjct: 323 VVRGFMNKMLD--HEVIPTLSGELDEEDLRAFAAAVENRFDNPFIDHQLLSICLNSTAKW 380
Query: 62 RFLDTLPLARELMKQNGSVSS--KTSLQALREYFGIPLEGSA 101
R D LP + ++Q + + TSL L ++ LEG A
Sbjct: 381 RARD-LPTLLDYVEQKDELPACLATSLATLIAFYSTGLEGRA 421
>gi|300727971|ref|ZP_07061349.1| exonuclease [Prevotella bryantii B14]
gi|299774813|gb|EFI71427.1| exonuclease [Prevotella bryantii B14]
Length = 279
Score = 36.2 bits (82), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 10/87 (11%)
Query: 33 FVAHNARRFDVPFLAKEFSRCSMNIP-DNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
F N+ RFD+P L +EF R ++ R +D + ++ K+N + A +
Sbjct: 90 FAGFNSNRFDIPLLCEEFLRAGIDFDFSKCRLIDAQTIFHKMEKRNLAA-------AYKF 142
Query: 92 YFGIPLEG--SAHRAMSDVNSLASILE 116
Y G +E AHRA D + +L+
Sbjct: 143 YTGHKMEDDFEAHRADQDTEATYRVLQ 169
>gi|242035185|ref|XP_002464987.1| hypothetical protein SORBIDRAFT_01g029940 [Sorghum bicolor]
gi|241918841|gb|EER91985.1| hypothetical protein SORBIDRAFT_01g029940 [Sorghum bicolor]
Length = 435
Score = 36.2 bits (82), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 5/91 (5%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
++ HN +FD + F+ P+ +DTLPL L + G + L +L
Sbjct: 102 VWAGHNIVKFDSVIIRDAFAEIGRPPPEPKGMVDTLPL---LTQWFGPRAGDMKLASLAN 158
Query: 92 YFGIPLEGSAHRAMSDVNSLASILERITSDL 122
YFG L HR++ DV +L+ + L
Sbjct: 159 YFG--LGKQRHRSLDDVKMNIDVLKNCATVL 187
>gi|21929661|gb|AAM81963.1|AF445377_1 DNA polymerase I-like protein B [Trypanosoma brucei]
Length = 1404
Score = 36.2 bits (82), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 54/128 (42%), Gaps = 24/128 (18%)
Query: 8 PRMEDLIPIVIKYVNSRLGPG-----EIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWR 62
PR+ ++ +Y+ RL G E+ I + HN D P L + F S++ +N
Sbjct: 823 PRLSEVTQAFARYL--RLSEGQRDEDEVTILIGHNVFALDEPLLRRAFRSESVDT-ENLL 879
Query: 63 FLDTLPLARELMKQNGSVSSKTS---------------LQALREYFGIPLEGSAHRAMSD 107
F D+L + + L KQ S K S L +L E + +G HRA +D
Sbjct: 880 FCDSLTILKGL-KQELQGSKKDSKFDRGVLDILTNSLRLSSLVEGLRVEADGELHRADTD 938
Query: 108 VNSLASIL 115
L +L
Sbjct: 939 AKMLWFVL 946
>gi|399023466|ref|ZP_10725526.1| exonuclease, DNA polymerase III, epsilon subunit family
[Chryseobacterium sp. CF314]
gi|398082966|gb|EJL73702.1| exonuclease, DNA polymerase III, epsilon subunit family
[Chryseobacterium sp. CF314]
Length = 407
Score = 36.2 bits (82), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 41/88 (46%), Gaps = 8/88 (9%)
Query: 33 FVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREY 92
V HN FD L + FSR + N LDT+PLA++L+ S SL L +
Sbjct: 83 LVGHNID-FDYRMLRQSFSRLGYDFKINT--LDTIPLAKKLIPDEVSY----SLGKLVKS 135
Query: 93 FGIPLEGSAHRAMSDVNSLASILERITS 120
GIPL + HRA D + + + S
Sbjct: 136 LGIPL-TNHHRAEGDARATLELFRLLIS 162
>gi|338708141|ref|YP_004662342.1| DNA polymerase III subunit epsilon [Zymomonas mobilis subsp.
pomaceae ATCC 29192]
gi|336294945|gb|AEI38052.1| DNA polymerase III, epsilon subunit [Zymomonas mobilis subsp.
pomaceae ATCC 29192]
Length = 232
Score = 36.2 bits (82), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 33 FVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREY 92
VAHNA FD FL E RC + R +DTL +AR K G +K +L AL
Sbjct: 86 LVAHNAA-FDFGFLNHELGRCGYSAICMTRMVDTLAIARS--KHPG---AKHTLDALCTR 139
Query: 93 FGI 95
+GI
Sbjct: 140 YGI 142
>gi|224023848|ref|ZP_03642214.1| hypothetical protein BACCOPRO_00565 [Bacteroides coprophilus DSM
18228]
gi|224017070|gb|EEF75082.1| hypothetical protein BACCOPRO_00565 [Bacteroides coprophilus DSM
18228]
Length = 258
Score = 36.2 bits (82), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 57/124 (45%), Gaps = 20/124 (16%)
Query: 29 EIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWR-FLDTLPLARELMKQNGSVSSKTSLQ 87
E A N+ RFDVP L +EF R ++I R F+D + +L +T
Sbjct: 86 EGADIAGFNSNRFDVPVLVEEFLRAGIDIDLTRRKFIDVQVIYHKL-------EQRTLSA 138
Query: 88 ALREYFGIPLEGSAHRAMSDVNSLASIL--------ERITSDLNFTLSDLLKTSFRANFD 139
A + Y G LE AH A +D + +L + + +D+NF LS+ +S+ N D
Sbjct: 139 AYKFYCGKNLE-DAHTAEADTRATYEVLKAQLDHYPDVLENDINF-LSEY--SSYNKNVD 194
Query: 140 HSKK 143
+ +
Sbjct: 195 FAGR 198
>gi|71755261|ref|XP_828545.1| mitochondrial DNA polymerase I protein B [Trypanosoma brucei
TREU927]
gi|70833931|gb|EAN79433.1| mitochondrial DNA polymerase I protein B, putative [Trypanosoma
brucei brucei strain 927/4 GUTat10.1]
gi|261334421|emb|CBH17415.1| conserved hypothetical protein, conserved [Trypanosoma brucei
gambiense DAL972]
Length = 1404
Score = 36.2 bits (82), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 54/128 (42%), Gaps = 24/128 (18%)
Query: 8 PRMEDLIPIVIKYVNSRLGPG-----EIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWR 62
PR+ ++ +Y+ RL G E+ I + HN D P L + F S++ +N
Sbjct: 823 PRLSEVTQAFARYL--RLSEGQRDEDEVTILIGHNVFALDEPLLRRAFRSESVDT-ENLL 879
Query: 63 FLDTLPLARELMKQNGSVSSKTS---------------LQALREYFGIPLEGSAHRAMSD 107
F D+L + + L KQ S K S L +L E + +G HRA +D
Sbjct: 880 FCDSLTILKGL-KQELQGSKKDSKFDRGVLDILTNSLRLSSLVEGLRVEADGELHRADTD 938
Query: 108 VNSLASIL 115
L +L
Sbjct: 939 AKMLWFVL 946
>gi|417002428|ref|ZP_11941817.1| DNA polymerase III, alpha subunit, Gram-positive type [Anaerococcus
prevotii ACS-065-V-Col13]
gi|325479569|gb|EGC82665.1| DNA polymerase III, alpha subunit, Gram-positive type [Anaerococcus
prevotii ACS-065-V-Col13]
Length = 1369
Score = 36.2 bits (82), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 62/140 (44%), Gaps = 20/140 (14%)
Query: 7 VPRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDT 66
P++++++ +K+ +I V N FDV F+ + R M I N +LDT
Sbjct: 415 CPKIDEVMKDFLKFCGD-------SILVGQNTD-FDVGFIKENCFR--MEIEFNPLYLDT 464
Query: 67 LPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASI----LERITSDL 122
LP+AR L S K SL + IP + HRA D + A I +RI
Sbjct: 465 LPMARALF----SDMKKFSLDKIARKLEIPA-FNHHRASDDARATAQIFIKMFDRIMKMN 519
Query: 123 NFTLSDLLK-TSFRANFDHS 141
+LS++ K S+R H
Sbjct: 520 GISLSNINKLKSYRPKAKHE 539
>gi|313678200|ref|YP_004055940.1| DNA polymerase III subunit alpha [Mycoplasma bovis PG45]
gi|312950476|gb|ADR25071.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
bovis PG45]
Length = 1458
Score = 36.2 bits (82), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 55/111 (49%), Gaps = 13/111 (11%)
Query: 28 GEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQ 87
G+IAI AHNA+ FD FL ++F +M P +DTL +R + G K L+
Sbjct: 504 GKIAI--AHNAK-FDFNFLKEQFRLNNMQFP-RVTVIDTLVASR--IGFPGYKRHK--LE 555
Query: 88 ALREYFGIPLEGS-AHRAMSDVNSLASILERITSDLN----FTLSDLLKTS 133
+ G+ + + AHR D LA++ I S+LN FT DL K S
Sbjct: 556 DVASRLGVVYDPNVAHRGDYDAKVLANVWVNIISELNAKGIFTFDDLSKYS 606
>gi|319775991|ref|YP_004138479.1| DNA polymerase III subunit epsilon [Haemophilus influenzae F3047]
gi|329123857|ref|ZP_08252414.1| DNA-directed DNA polymerase III epsilon subunit [Haemophilus
aegyptius ATCC 11116]
gi|317450582|emb|CBY86799.1| DNA polymerase III epsilon subunit [Haemophilus influenzae F3047]
gi|327468820|gb|EGF14294.1| DNA-directed DNA polymerase III epsilon subunit [Haemophilus
aegyptius ATCC 11116]
Length = 256
Score = 36.2 bits (82), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 16/116 (13%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIP--DNWRFLD 65
P +D+ + Y+N A + HNA FDV F+ EF + ++N+ D D
Sbjct: 76 PEFKDVAQDFLDYING-------AELLIHNAP-FDVGFMDYEFHKLNLNVKTDDICLVTD 127
Query: 66 TLPLARELMKQNGSVSSKTSLQALREYFGIP-LEGSAHRAMSDVNSLASILERITS 120
TL +AR++ + +L AL + GI + + H A+ D LA + +T
Sbjct: 128 TLQMARQMYP-----GKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLMMTG 178
>gi|398910033|ref|ZP_10654846.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
[Pseudomonas sp. GM49]
gi|398186865|gb|EJM74225.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
[Pseudomonas sp. GM49]
Length = 201
Score = 36.2 bits (82), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 47/106 (44%), Gaps = 10/106 (9%)
Query: 17 VIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQ 76
V+ VN +G + +AHNA FD F E R N F +L LAR LM
Sbjct: 73 VMNEVNEFVGTTPL---LAHNAA-FDQKFWDFELGRIKRTRLQN--FACSLLLARRLM-- 124
Query: 77 NGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITSDL 122
+ L L + +P G AHRAM+D A+++ + +L
Sbjct: 125 --PAAPNHKLGTLTTFANLPHTGKAHRAMADAEMAANLMAHLEEEL 168
>gi|402772725|ref|YP_006592262.1| DNA polymerase III subunit epsilon [Methylocystis sp. SC2]
gi|401774745|emb|CCJ07611.1| DNA polymerase III, epsilon subunit [Methylocystis sp. SC2]
Length = 238
Score = 36.2 bits (82), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 46/102 (45%), Gaps = 11/102 (10%)
Query: 29 EIAIFVAHNARRFDVPFLAKEFSRCSMNIP--DNWRFLDTLPLARELMKQNGSVSSKTSL 86
E A V HNA FD FL EF+ MN+P R +DTL +AR + G SL
Sbjct: 82 EDAPLVIHNAE-FDTRFLNAEFAL--MNLPPLGGGRIIDTLAMARR--RHPG---GPNSL 133
Query: 87 QALREYFGIPLE-GSAHRAMSDVNSLASILERITSDLNFTLS 127
AL + + I L H A+ D N LA + + LS
Sbjct: 134 DALCQRYAIDLSRREKHGALLDANLLAEVYAELCGGRQSALS 175
>gi|254472171|ref|ZP_05085571.1| DNA polymerase III, epsilon subunit [Pseudovibrio sp. JE062]
gi|374328667|ref|YP_005078851.1| DNA polymerase III subunit epsilon [Pseudovibrio sp. FO-BEG1]
gi|211958454|gb|EEA93654.1| DNA polymerase III, epsilon subunit [Pseudovibrio sp. JE062]
gi|359341455|gb|AEV34829.1| DNA polymerase 3, epsilon subunit [Pseudovibrio sp. FO-BEG1]
Length = 236
Score = 36.2 bits (82), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
A V HNA FD+ F+ E +RC+ N + LDTL LAR GSV SL AL
Sbjct: 84 ARLVIHNAP-FDMGFINMELARCNKPKISNTQVLDTLKLARRKFP-TGSV----SLDALC 137
Query: 91 EYFGIPLEGSA-HRAMSDVNSLASI 114
+GI H A+ D LA +
Sbjct: 138 SRYGIDNSKRVYHGALLDAELLAEV 162
>gi|397667002|ref|YP_006508539.1| DNA polymerase III subunit epsilon [Legionella pneumophila subsp.
pneumophila]
gi|395130413|emb|CCD08653.1| DNA polymerase III epsilon subunit [Legionella pneumophila subsp.
pneumophila]
Length = 233
Score = 36.2 bits (82), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 50/110 (45%), Gaps = 16/110 (14%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMN--IPDNWRFLD 65
P +D++ +++V E + + HNA FDV FL E N + D R LD
Sbjct: 68 PLFQDIVTEFVQFV-------EGSELIIHNAP-FDVGFLNSELKHVKWNKTLEDYCRILD 119
Query: 66 TLPLARELMKQNGSVSSKTSLQALREYFGIP-LEGSAHRAMSDVNSLASI 114
TL LARE K G + SL AL + + I H A+ D LA +
Sbjct: 120 TLILARE--KHPG---QRNSLDALCKRYEIDHFNRELHGALLDAEILAYV 164
>gi|281492444|ref|YP_003354424.1| ATP-dependent DNA helicase/DNA polymerase III subunit epsilon
[Lactococcus lactis subsp. lactis KF147]
gi|281376108|gb|ADA65599.1| ATP-dependent DNA helicase/DNA polymerase III, epsilon subunit
[Lactococcus lactis subsp. lactis KF147]
Length = 794
Score = 36.2 bits (82), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 7/93 (7%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
++FVAHNA RFD L K F + + R +DT+ LAR K L++L
Sbjct: 86 SVFVAHNA-RFDYGLLEKSFLNAGLEFNEMLR-VDTVDLARVFY----PTFEKYGLESLS 139
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILERITSDLN 123
E + H A+SD + A +L +I + +
Sbjct: 140 EKLDLA-HDHPHAAVSDAYATAELLLKIEAKIQ 171
>gi|15673814|ref|NP_267989.1| DinG [Lactococcus lactis subsp. lactis Il1403]
gi|12724861|gb|AAK05930.1|AE006413_6 ATP-dependent helicase DinG [Lactococcus lactis subsp. lactis
Il1403]
Length = 794
Score = 36.2 bits (82), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 7/93 (7%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
++FVAHNA RFD L K F + + R +DT+ LAR K L++L
Sbjct: 86 SVFVAHNA-RFDYGLLEKSFLNAGLEFNEMLR-VDTVDLARVFY----PTFEKYGLESLS 139
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILERITSDLN 123
E + H A+SD + A +L +I + +
Sbjct: 140 EKLDLA-HDHPHAAVSDAYATAELLLKIEAKIQ 171
>gi|374673940|dbj|BAL51831.1| ATP-dependent helicase DinG [Lactococcus lactis subsp. lactis IO-1]
Length = 794
Score = 36.2 bits (82), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 7/93 (7%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
++FVAHNA RFD L K F + + R +DT+ LAR K L++L
Sbjct: 86 SVFVAHNA-RFDYGLLEKSFLNAGLEFNEMLR-VDTVDLARVFY----PTFEKYGLESLS 139
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILERITSDLN 123
E + H A+SD + A +L +I + +
Sbjct: 140 EKLDLA-HDHPHAAVSDAYATAELLLKIEAKIQ 171
>gi|398980073|ref|ZP_10688808.1| DNA polymerase III, alpha subunit (gram-positive type) [Pseudomonas
sp. GM25]
gi|398135032|gb|EJM24162.1| DNA polymerase III, alpha subunit (gram-positive type) [Pseudomonas
sp. GM25]
Length = 201
Score = 36.2 bits (82), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 46/106 (43%), Gaps = 10/106 (9%)
Query: 17 VIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQ 76
V+ VN +G +AHNA FD F E R N F +L LAR LM
Sbjct: 73 VMNEVNEFVG---CTPLLAHNAA-FDQKFWDFELGRIKRTRLQN--FACSLLLARRLM-- 124
Query: 77 NGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITSDL 122
+ L L + +P G AHRAM+D A+++ + +L
Sbjct: 125 --PAAPNHKLGTLTTFAQLPHTGQAHRAMADAEMAANLMAHLADEL 168
>gi|258546253|ref|ZP_05706487.1| DNA polymerase III, epsilon subunit [Cardiobacterium hominis ATCC
15826]
gi|258518519|gb|EEV87378.1| DNA polymerase III, epsilon subunit [Cardiobacterium hominis ATCC
15826]
Length = 141
Score = 36.2 bits (82), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 7/84 (8%)
Query: 41 FDVPFLAKEFSRCSMN--IPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREYFGIPLE 98
FD F +EF + + D +R LDTL LAR+ + S S+ SL +L +Y+GI
Sbjct: 3 FDQSFFNREFKLAGLKYKLEDRFRLLDTLDLARKKI----SGISRFSLDSLCKYYGIDNS 58
Query: 99 G-SAHRAMSDVNSLASILERITSD 121
+ H A+ D LA + ++T++
Sbjct: 59 NRTLHGALLDSQLLAEVYLKLTTE 82
>gi|149194243|ref|ZP_01871340.1| DNA polymerase III subunit epsilon [Caminibacter mediatlanticus
TB-2]
gi|149135418|gb|EDM23897.1| DNA polymerase III subunit epsilon [Caminibacter mediatlanticus
TB-2]
Length = 248
Score = 36.2 bits (82), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 9/92 (9%)
Query: 24 RLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSK 83
RL G+ ++ VAH A FD FLAK+F + + N L T+ LA++ +K N +
Sbjct: 138 RLFLGD-SVIVAH-AADFDFNFLAKQFEKEDLGYLLNPH-LCTITLAKKTLKAN-----R 189
Query: 84 TSLQALREYFGIPLEGSAHRAMSDVNSLASIL 115
L+ L+E +P E HRA+ D + +
Sbjct: 190 YGLKYLKEELNLP-EEIDHRALGDARTTTRVF 220
>gi|354605382|ref|ZP_09023370.1| hypothetical protein HMPREF9450_02285 [Alistipes indistinctus YIT
12060]
gi|353346924|gb|EHB91202.1| hypothetical protein HMPREF9450_02285 [Alistipes indistinctus YIT
12060]
Length = 258
Score = 36.2 bits (82), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 16/100 (16%)
Query: 33 FVAHNARRFDVPFLAKEFSRCSMNIP-DNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
F +N+ +FD+P L +EF R ++I D RF+D + + +T + A +
Sbjct: 90 FGGYNSNKFDIPVLVEEFLRAGVDIDLDKSRFIDVQNIFHRM-------EQRTLVAAYKF 142
Query: 92 YFGIPLEGSAHRAMSDVNSLASIL-------ERITSDLNF 124
Y G L AH A +D + +L E + +D++F
Sbjct: 143 YCGKDL-TEAHSAEADTLATYEVLLSQLERYEELQNDVDF 181
>gi|385831314|ref|YP_005869127.1| ATP-dependent DNA helicase DinG [Lactococcus lactis subsp. lactis
CV56]
gi|418037592|ref|ZP_12675967.1| Hydrolase acting on acid anhydrides in phosphorous-containing
anhydrides [Lactococcus lactis subsp. cremoris CNCM
I-1631]
gi|326407322|gb|ADZ64393.1| ATP-dependent DNA helicase DinG [Lactococcus lactis subsp. lactis
CV56]
gi|354694360|gb|EHE94026.1| Hydrolase acting on acid anhydrides in phosphorous-containing
anhydrides [Lactococcus lactis subsp. cremoris CNCM
I-1631]
Length = 794
Score = 36.2 bits (82), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 7/93 (7%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
++FVAHNA RFD L K F + + R +DT+ LAR K L++L
Sbjct: 86 SVFVAHNA-RFDYGLLEKSFLNAGLEFNEMLR-VDTVDLARVFY----PTFEKYGLESLS 139
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILERITSDLN 123
E + H A+SD + A +L +I + +
Sbjct: 140 EKLDLA-HDHPHAAVSDAYATAELLLKIEAKIQ 171
>gi|163757474|ref|ZP_02164563.1| DNA polymerase III subunit epsilon [Hoeflea phototrophica DFL-43]
gi|162284976|gb|EDQ35258.1| DNA polymerase III subunit epsilon [Hoeflea phototrophica DFL-43]
Length = 233
Score = 36.2 bits (82), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 35/73 (47%), Gaps = 9/73 (12%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
A +VAHNA FD+ FL EF R + D +DTL LAR SL AL
Sbjct: 84 AHYVAHNAN-FDMGFLNAEFDRIGLPPVDPGLVIDTLALARRRHPM-----GPNSLDALC 137
Query: 91 EYFGIPLEGSAHR 103
+GI +AHR
Sbjct: 138 RRYGID---NAHR 147
>gi|410617870|ref|ZP_11328834.1| DNA polymerase III subunit epsilon [Glaciecola polaris LMG 21857]
gi|410162600|dbj|GAC32972.1| DNA polymerase III subunit epsilon [Glaciecola polaris LMG 21857]
Length = 206
Score = 35.8 bits (81), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
Query: 33 FVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREY 92
VAHNA FD FL E R S P F +L LAR L + + L +L Y
Sbjct: 91 LVAHNAS-FDKRFLDAELRRISR--PYTGSFACSLLLARRLYQH----APNHKLGSLISY 143
Query: 93 FGIPLEGSAHRAMSDVNSLASILERITSDL 122
IP +G HRA+ D A + + D+
Sbjct: 144 KNIPAQGDFHRALFDSEMTAKLWMTMLDDI 173
>gi|398931335|ref|ZP_10665137.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
[Pseudomonas sp. GM48]
gi|398163787|gb|EJM51937.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
[Pseudomonas sp. GM48]
Length = 201
Score = 35.8 bits (81), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
Query: 33 FVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREY 92
+AHNA FD F E R N F +L LAR LM + L L +
Sbjct: 86 LLAHNAA-FDQKFWDFELGRIKRTRLQN--FACSLLLARRLM----PAAPNHKLGTLTTF 138
Query: 93 FGIPLEGSAHRAMSDVNSLASILERITSDL 122
+P G AHRAM+D A+++ + +L
Sbjct: 139 ANLPHTGKAHRAMADAEMAANLMAHLEKEL 168
>gi|345860951|ref|ZP_08813232.1| DNA polymerase III, alpha subunit, Gram-positive type
[Desulfosporosinus sp. OT]
gi|344325951|gb|EGW37448.1| DNA polymerase III, alpha subunit, Gram-positive type
[Desulfosporosinus sp. OT]
Length = 1448
Score = 35.8 bits (81), Expect = 5.4, Method: Composition-based stats.
Identities = 33/124 (26%), Positives = 60/124 (48%), Gaps = 19/124 (15%)
Query: 10 MEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPL 69
++ +IP ++ ++ E ++ VAHNA FD+ FL + ++ +LDTL L
Sbjct: 490 IDRVIPKLLDFI-------EGSVLVAHNAD-FDMGFLKHNAKALGYDF--DYTYLDTLSL 539
Query: 70 ARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASI----LERITSDLNFT 125
++EL + L + + G +E AHRA+ DV++ + LE++ T
Sbjct: 540 SKELFPDYKTYK----LGRIAKNLGFKVE-VAHRALDDVDTTVKVFKVMLEKLKQRGAET 594
Query: 126 LSDL 129
L D+
Sbjct: 595 LEDI 598
>gi|419808608|ref|ZP_14333507.1| DNA polymerase III alpha subunit [Mycoplasma agalactiae 14628]
gi|390605513|gb|EIN14891.1| DNA polymerase III alpha subunit [Mycoplasma agalactiae 14628]
Length = 1459
Score = 35.8 bits (81), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 13/107 (12%)
Query: 28 GEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQ 87
G++AI AHNA+ FD FL ++F +M P N +DTL +R + L+
Sbjct: 505 GKVAI--AHNAK-FDFNFLKEQFRLNNMPFP-NVTVIDTLIASRIGFPN----YKRHKLE 556
Query: 88 ALREYFGIPLEGS-AHRAMSDVNSLASILERITSDLN----FTLSDL 129
+ G+ + + AHR D LA++ I S+LN FT DL
Sbjct: 557 DVASRLGVVYDPNVAHRGDYDAKVLANVWVNIISELNAKNIFTFDDL 603
>gi|376316307|emb|CCF99702.1| exonuclease, RNase T/DNA polymerase III-like [uncultured
Flavobacteriia bacterium]
Length = 256
Score = 35.8 bits (81), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 9/98 (9%)
Query: 37 NARRFDVPFLAKEFSRCSMNIP-DNWRFLDTLPLARELMKQNGSVSSKTSLQALREYFGI 95
N+ RFD+P LA+E R +++ + +D + ++ K+N S A + Y G
Sbjct: 94 NSDRFDIPLLAEEMLRVEIDVDFKKYLTVDVQTIFHKMEKRNLSA-------AYKFYCGK 146
Query: 96 PLEGSAHRAMSDVNSLASILERITSDLNFTLSDLLKTS 133
LE +AH A +D N+ +L+ N +D+ K S
Sbjct: 147 DLE-NAHSAAADTNATYEVLKSQIEKYNELENDVSKLS 183
>gi|319901725|ref|YP_004161453.1| Exonuclease RNase T and DNA polymerase III [Bacteroides helcogenes
P 36-108]
gi|319416756|gb|ADV43867.1| Exonuclease RNase T and DNA polymerase III [Bacteroides helcogenes
P 36-108]
Length = 256
Score = 35.8 bits (81), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 17/114 (14%)
Query: 37 NARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREYFGIP 96
N+ RFD+P LA+EF R ++I + R + + M+Q +T A + Y G
Sbjct: 94 NSNRFDIPVLAEEFLRAGVDIDMSRRKFVDVQVIFHKMEQ------RTLSAAYKFYCGKN 147
Query: 97 LEGSAHRAMSDVNSLASIL-------ERITSDLNFTLSDLLKTSFRANFDHSKK 143
LE AH A +D + +L E + +D+ F L+D +SF N D + +
Sbjct: 148 LE-DAHTAEADTRATYEVLMAQLDRYEDLQNDVAF-LADY--SSFNKNVDFAGR 197
>gi|357121661|ref|XP_003562536.1| PREDICTED: LOW QUALITY PROTEIN: serine carboxypeptidase II-3-like
[Brachypodium distachyon]
Length = 515
Score = 35.8 bits (81), Expect = 5.6, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
Query: 1 MVNRSYVPRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDN 60
+V+ +E L P YV + L ++ + N R D P++A CS ++ N
Sbjct: 342 LVSPPITSSIESLDPCTEHYVEAYLNNPDVQKALHANVTRLDHPWIA-----CSDHLWPN 396
Query: 61 WRFLDT--LPLARELMKQN 77
W D+ LP+ R+LMK N
Sbjct: 397 WTDYDSTVLPIIRDLMKNN 415
>gi|384438522|ref|YP_005653246.1| hypothetical protein [Thermus sp. CCB_US3_UF1]
gi|359289655|gb|AEV15172.1| hypothetical protein TCCBUS3UF1_1220 [Thermus sp. CCB_US3_UF1]
Length = 1658
Score = 35.8 bits (81), Expect = 5.7, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
Query: 33 FVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREY 92
V HN R+D+P L + +++P LDTL LA L L L +
Sbjct: 91 LVGHNLLRYDLPLLGRYLKDLDLSLPAR-SVLDTLRLAHLLFPVPPPGLEGYRLGDLYRF 149
Query: 93 F-GIPLEGSAHRAMSDVNSLASILERITS 120
F G L+G AHRA+ D + +L+ + +
Sbjct: 150 FTGHELQG-AHRALEDARANLQVLDHLMA 177
>gi|145628970|ref|ZP_01784769.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 22.1-21]
gi|144978473|gb|EDJ88196.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 22.1-21]
Length = 256
Score = 35.8 bits (81), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 16/116 (13%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIP--DNWRFLD 65
P +D+ + Y+N A + HNA FDV F+ EF + ++N+ D D
Sbjct: 76 PEFKDVAQDFLDYING-------AELLIHNAP-FDVGFMDYEFRKLNLNVKTDDICLVTD 127
Query: 66 TLPLARELMKQNGSVSSKTSLQALREYFGIP-LEGSAHRAMSDVNSLASILERITS 120
TL +AR++ + +L AL + GI + + H A+ D LA + +T
Sbjct: 128 TLQMARQMYP-----GKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLMMTG 178
>gi|224535480|ref|ZP_03676019.1| hypothetical protein BACCELL_00343 [Bacteroides cellulosilyticus
DSM 14838]
gi|224522946|gb|EEF92051.1| hypothetical protein BACCELL_00343 [Bacteroides cellulosilyticus
DSM 14838]
Length = 243
Score = 35.8 bits (81), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 19/115 (16%)
Query: 37 NARRFDVPFLAKEFSRCSMNIPDNWR-FLDTLPLARELMKQNGSVSSKTSLQALREYFGI 95
N+ RFD+P LA+EF R ++I + R F+D + +L +T A + Y G
Sbjct: 81 NSNRFDIPVLAEEFLRAGVDIDLSRRKFVDVQVIFHKL-------EQRTLSAAYKFYCGK 133
Query: 96 PLEGSAHRAMSDVNSLASIL-------ERITSDLNFTLSDLLKTSFRANFDHSKK 143
LE AH A +D + +L + +D+ F L+D +SF N D + +
Sbjct: 134 NLE-DAHTAAADTQATYEVLMAQLDRYSELQNDIAF-LADY--SSFNKNVDFAGR 184
>gi|319898105|ref|YP_004136302.1| DNA polymerase III subunit epsilon [Haemophilus influenzae F3031]
gi|317433611|emb|CBY81995.1| DNA polymerase III epsilon subunit [Haemophilus influenzae F3031]
Length = 256
Score = 35.8 bits (81), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 16/116 (13%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIP--DNWRFLD 65
P +D+ + Y+N A + HNA FDV F+ EF + ++N+ D D
Sbjct: 76 PEFKDVAQDFLDYING-------AELLIHNAP-FDVGFMDYEFRKLNLNVKTDDICLVTD 127
Query: 66 TLPLARELMKQNGSVSSKTSLQALREYFGIP-LEGSAHRAMSDVNSLASILERITS 120
TL +AR++ + +L AL + GI + + H A+ D LA + +T
Sbjct: 128 TLQMARQMYP-----GKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLMMTG 178
>gi|302389800|ref|YP_003825621.1| DNA polymerase III catalytic subunit, PolC type
[Thermosediminibacter oceani DSM 16646]
gi|302200428|gb|ADL07998.1| DNA polymerase III catalytic subunit, PolC type
[Thermosediminibacter oceani DSM 16646]
Length = 1415
Score = 35.8 bits (81), Expect = 5.8, Method: Composition-based stats.
Identities = 31/108 (28%), Positives = 53/108 (49%), Gaps = 15/108 (13%)
Query: 5 SYVPRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFL 64
S P ++D++ ++++ + IFVAHNA FD F+ ++ + M DN + +
Sbjct: 464 SQAPPVKDVMSDFLRFIGN-------GIFVAHNAE-FDAGFIRRDCKKFGMKF-DN-KVM 513
Query: 65 DTLPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLA 112
DTL L+ + + L + + F I + GS HRA D N+ A
Sbjct: 514 DTLNLSALVFPE----LKNHRLDTIAKKFNINM-GSHHRAGDDANTTA 556
>gi|77461145|ref|YP_350652.1| exonuclease [Pseudomonas fluorescens Pf0-1]
gi|77385148|gb|ABA76661.1| putative exonuclease [Pseudomonas fluorescens Pf0-1]
Length = 203
Score = 35.8 bits (81), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
Query: 33 FVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREY 92
+AHNA FD F E R N F +L LAR LM + L L +
Sbjct: 86 LLAHNAA-FDQKFWDFELGRIKRTRLQN--FACSLLLARRLM----PAAPNHKLGTLTTF 138
Query: 93 FGIPLEGSAHRAMSDVNSLASILERITSDL 122
+P G AHRAM+D A+++ + +L
Sbjct: 139 AQLPHTGQAHRAMADAEMAANLMVHLAGEL 168
>gi|342904048|ref|ZP_08725850.1| DNA polymerase III subunit epsilon [Haemophilus haemolyticus
M21621]
gi|342904650|ref|ZP_08726449.1| DNA polymerase III subunit epsilon [Haemophilus haemolyticus
M21621]
gi|341953071|gb|EGT79585.1| DNA polymerase III subunit epsilon [Haemophilus haemolyticus
M21621]
gi|341954057|gb|EGT80551.1| DNA polymerase III subunit epsilon [Haemophilus haemolyticus
M21621]
Length = 256
Score = 35.8 bits (81), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 16/116 (13%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFL--D 65
P +++ + Y+N A + HNA FDV F+ EF + ++N+ N L D
Sbjct: 76 PEFKEVAQDFLDYING-------AELIIHNAP-FDVGFMDYEFRKLNLNVKTNDICLVTD 127
Query: 66 TLPLARELMKQNGSVSSKTSLQALREYFGIP-LEGSAHRAMSDVNSLASILERITS 120
TL +AR++ + +L AL + GI + + H A+ D LA + +T
Sbjct: 128 TLQMARQMYP-----GKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLMMTG 178
>gi|145639808|ref|ZP_01795410.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittII]
gi|145271176|gb|EDK11091.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittII]
Length = 256
Score = 35.8 bits (81), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 16/116 (13%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIP--DNWRFLD 65
P +D+ + Y+N A + HNA FDV F+ EF + ++N+ D D
Sbjct: 76 PEFKDVAQDFLDYING-------AELLIHNAP-FDVGFMDYEFRKLNLNVKTDDICLVTD 127
Query: 66 TLPLARELMKQNGSVSSKTSLQALREYFGIP-LEGSAHRAMSDVNSLASILERITS 120
TL +AR++ + +L AL + GI + + H A+ D LA + +T
Sbjct: 128 TLQMARQMYP-----GKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLMMTG 178
>gi|358059304|ref|ZP_09147606.1| DNA polymerase III, epsilon subunit [Staphylococcus simiae CCM
7213]
gi|357256608|gb|EHJ06960.1| DNA polymerase III, epsilon subunit [Staphylococcus simiae CCM
7213]
Length = 899
Score = 35.8 bits (81), Expect = 5.9, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 40/84 (47%), Gaps = 7/84 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
IFVAHN FD+ F+ K F C++N + +DTL E+ K L L E
Sbjct: 86 IFVAHNVD-FDLNFIKKAFKDCNINYRPK-KVIDTL----EIFKIAFPTDKSYQLSELAE 139
Query: 92 YFGIPLEGSAHRAMSDVNSLASIL 115
I L +AHRA D + A ++
Sbjct: 140 AHDITL-ANAHRADEDAATTAKLM 162
>gi|281424378|ref|ZP_06255291.1| exonuclease [Prevotella oris F0302]
gi|281401647|gb|EFB32478.1| exonuclease [Prevotella oris F0302]
Length = 286
Score = 35.8 bits (81), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 10/86 (11%)
Query: 33 FVAHNARRFDVPFLAKEFSRCSMNIP-DNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
F N+ RFDVP LA+EF R ++ R +D + ++ K+N + A
Sbjct: 90 FAGFNSNRFDVPMLAEEFLRAGIDFDFSKCRLIDAQTIFHKMEKRNLAA-------AYEF 142
Query: 92 YFGIPLEG--SAHRAMSDVNSLASIL 115
Y G +E AHRA D + +L
Sbjct: 143 YCGRKMEEDFEAHRADQDTEATYRVL 168
>gi|432860346|ref|XP_004069512.1| PREDICTED: DNA polymerase III PolC-type-like [Oryzias latipes]
Length = 196
Score = 35.8 bits (81), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 55/113 (48%), Gaps = 14/113 (12%)
Query: 28 GEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDN---WRFLDTLPLARELMKQNGSVSSKT 84
G + AHNARRFD P + ++ S+ + FLDT L++ L + S S +
Sbjct: 90 GRPVLLAAHNARRFDAPVFTRVLAQNSLLLEFQQVVCGFLDTFLLSKSLYPRLASYSQEY 149
Query: 85 SLQA-LREYFGIPLEGSAHRAMSDVNSLASILERITSDLNFTLSDLLKTSFRA 136
+Q L E + +AH A+ D A +L+ + S++L+++F+A
Sbjct: 150 LVQTFLGESY------NAHDAVED----AKMLQELYRAWKPHPSNVLRSTFKA 192
>gi|329955851|ref|ZP_08296654.1| exonuclease [Bacteroides clarus YIT 12056]
gi|328525231|gb|EGF52281.1| exonuclease [Bacteroides clarus YIT 12056]
Length = 256
Score = 35.8 bits (81), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 57/114 (50%), Gaps = 17/114 (14%)
Query: 37 NARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREYFGIP 96
N+ RFD+P LA+EF R ++I + R + + M+Q +T A + Y G
Sbjct: 94 NSNRFDIPVLAEEFLRADVDIDMSRRKFVDVQVIFHKMEQ------RTLSAAYKFYCGKN 147
Query: 97 LEGSAHRAMSDVNS----LASILER---ITSDLNFTLSDLLKTSFRANFDHSKK 143
LE AH A +D + L S L+R + +D+ F LSD +SF N D + +
Sbjct: 148 LE-DAHTAEADTRATYEVLMSQLDRYPDLQNDVTF-LSDY--SSFNKNVDFAGR 197
>gi|418010933|ref|ZP_12650704.1| DinG family ATP-dependent helicase [Lactobacillus casei Lc-10]
gi|410553512|gb|EKQ27515.1| DinG family ATP-dependent helicase [Lactobacillus casei Lc-10]
Length = 931
Score = 35.8 bits (81), Expect = 6.1, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 9/90 (10%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPD-NWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
+FVAHN FD PFL EF R + +P +DT+ LA+ L+ + S L L
Sbjct: 91 VFVAHNVN-FDYPFLNAEFER--VGLPKLQLAAIDTVELAQILLPEISSF----RLPDLT 143
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILERITS 120
Y I + + H+A SD S A +L ++ +
Sbjct: 144 SYLQIEHD-NPHQADSDAISTAKLLRQLAA 172
>gi|418008079|ref|ZP_12647949.1| DinG family ATP-dependent helicase [Lactobacillus casei UW4]
gi|410547559|gb|EKQ21790.1| DinG family ATP-dependent helicase [Lactobacillus casei UW4]
Length = 931
Score = 35.8 bits (81), Expect = 6.1, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 9/90 (10%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPD-NWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
+FVAHN FD PFL EF R + +P +DT+ LA+ L+ + S L L
Sbjct: 91 VFVAHNVN-FDYPFLNAEFER--VGLPKLQLAAIDTVELAQILLPEISSF----RLPDLT 143
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILERITS 120
Y I + + H+A SD S A +L ++ +
Sbjct: 144 SYLQIEHD-NPHQADSDAISTAKLLRQLAA 172
>gi|418005200|ref|ZP_12645196.1| DinG family ATP-dependent helicase [Lactobacillus casei UW1]
gi|410547453|gb|EKQ21686.1| DinG family ATP-dependent helicase [Lactobacillus casei UW1]
Length = 931
Score = 35.8 bits (81), Expect = 6.1, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 9/90 (10%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPD-NWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
+FVAHN FD PFL EF R + +P +DT+ LA+ L+ + S L L
Sbjct: 91 VFVAHNVN-FDYPFLNAEFER--VGLPKLQLAAIDTVELAQILLPEISSF----RLPDLT 143
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILERITS 120
Y I + + H+A SD S A +L ++ +
Sbjct: 144 SYLQIEHD-NPHQADSDAISTAKLLRQLAA 172
>gi|417999229|ref|ZP_12639440.1| DinG family ATP-dependent helicase [Lactobacillus casei T71499]
gi|410539505|gb|EKQ14033.1| DinG family ATP-dependent helicase [Lactobacillus casei T71499]
Length = 928
Score = 35.8 bits (81), Expect = 6.1, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 9/90 (10%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPD-NWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
+FVAHN FD PFL EF R + +P +DT+ LA+ L+ + S L L
Sbjct: 88 VFVAHNVN-FDYPFLNAEFER--VGLPKLQLAAIDTVELAQILLPEISSF----RLPDLT 140
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILERITS 120
Y I + + H+A SD S A +L ++ +
Sbjct: 141 SYLQIEHD-NPHQADSDAISTAKLLRQLAA 169
>gi|417989734|ref|ZP_12630235.1| DinG family ATP-dependent helicase [Lactobacillus casei A2-362]
gi|418015173|ref|ZP_12654750.1| DinG family ATP-dependent helicase [Lactobacillus casei Lpc-37]
gi|410537479|gb|EKQ12053.1| DinG family ATP-dependent helicase [Lactobacillus casei A2-362]
gi|410551997|gb|EKQ26036.1| DinG family ATP-dependent helicase [Lactobacillus casei Lpc-37]
Length = 928
Score = 35.8 bits (81), Expect = 6.1, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 9/90 (10%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPD-NWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
+FVAHN FD PFL EF R + +P +DT+ LA+ L+ + S L L
Sbjct: 88 VFVAHNVN-FDYPFLNAEFER--VGLPKLQLAAIDTVELAQILLPEISSF----RLPDLT 140
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILERITS 120
Y I + + H+A SD S A +L ++ +
Sbjct: 141 SYLQIEHD-NPHQADSDAISTAKLLRQLAA 169
>gi|417996351|ref|ZP_12636632.1| DinG family ATP-dependent helicase [Lactobacillus casei M36]
gi|410535662|gb|EKQ10279.1| DinG family ATP-dependent helicase [Lactobacillus casei M36]
Length = 931
Score = 35.8 bits (81), Expect = 6.1, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 9/90 (10%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPD-NWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
+FVAHN FD PFL EF R + +P +DT+ LA+ L+ + S L L
Sbjct: 91 VFVAHNVN-FDYPFLNAEFER--VGLPKLQLAAIDTVELAQILLPEISSF----RLPDLT 143
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILERITS 120
Y I + + H+A SD S A +L ++ +
Sbjct: 144 SYLQIEHD-NPHQADSDAISTAKLLRQLAA 172
>gi|417992997|ref|ZP_12633348.1| DinG family ATP-dependent helicase [Lactobacillus casei CRF28]
gi|410532406|gb|EKQ07114.1| DinG family ATP-dependent helicase [Lactobacillus casei CRF28]
Length = 931
Score = 35.8 bits (81), Expect = 6.1, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 9/90 (10%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPD-NWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
+FVAHN FD PFL EF R + +P +DT+ LA+ L+ + S L L
Sbjct: 91 VFVAHNVN-FDYPFLNAEFER--VGLPKLQLAAIDTVELAQILLPEISSF----RLPDLT 143
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILERITS 120
Y I + + H+A SD S A +L ++ +
Sbjct: 144 SYLQIEHD-NPHQADSDAISTAKLLRQLAA 172
>gi|417983510|ref|ZP_12624146.1| DinG family ATP-dependent helicase [Lactobacillus casei 21/1]
gi|410527779|gb|EKQ02641.1| DinG family ATP-dependent helicase [Lactobacillus casei 21/1]
Length = 931
Score = 35.8 bits (81), Expect = 6.1, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 9/90 (10%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPD-NWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
+FVAHN FD PFL EF R + +P +DT+ LA+ L+ + S L L
Sbjct: 91 VFVAHNVN-FDYPFLNAEFER--VGLPKLQLAAIDTVELAQILLPEISSF----RLPDLT 143
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILERITS 120
Y I + + H+A SD S A +L ++ +
Sbjct: 144 SYLQIEHD-NPHQADSDAISTAKLLRQLAA 172
>gi|417980778|ref|ZP_12621457.1| DinG family ATP-dependent helicase [Lactobacillus casei 12A]
gi|410524289|gb|EKP99201.1| DinG family ATP-dependent helicase [Lactobacillus casei 12A]
Length = 928
Score = 35.8 bits (81), Expect = 6.1, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 9/90 (10%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPD-NWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
+FVAHN FD PFL EF R + +P +DT+ LA+ L+ + S L L
Sbjct: 88 VFVAHNVN-FDYPFLNAEFER--VGLPKLQLAAIDTVELAQILLPEISSF----RLPDLT 140
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILERITS 120
Y I + + H+A SD S A +L ++ +
Sbjct: 141 SYLQIEHD-NPHQADSDAISTAKLLRQLAA 169
>gi|409997344|ref|YP_006751745.1| DNA-directed DNA polymerase III subunit epsilon [Lactobacillus
casei W56]
gi|406358356|emb|CCK22626.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
casei W56]
Length = 931
Score = 35.8 bits (81), Expect = 6.1, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 9/90 (10%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPD-NWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
+FVAHN FD PFL EF R + +P +DT+ LA+ L+ + S L L
Sbjct: 91 VFVAHNVN-FDYPFLNAEFER--VGLPKLQLAAIDTVELAQILLPEISSF----RLPDLT 143
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILERITS 120
Y I + + H+A SD S A +L ++ +
Sbjct: 144 SYLQIEHD-NPHQADSDAISTAKLLRQLAA 172
>gi|301066539|ref|YP_003788562.1| Rad3-like DNA helicase [Lactobacillus casei str. Zhang]
gi|300438946|gb|ADK18712.1| Rad3-related DNA helicase [Lactobacillus casei str. Zhang]
Length = 931
Score = 35.8 bits (81), Expect = 6.1, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 9/90 (10%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPD-NWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
+FVAHN FD PFL EF R + +P +DT+ LA+ L+ + S L L
Sbjct: 91 VFVAHNVN-FDYPFLNAEFER--VGLPKLQLAAIDTVELAQILLPEISSF----RLPDLT 143
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILERITS 120
Y I + + H+A SD S A +L ++ +
Sbjct: 144 SYLQIEHD-NPHQADSDAISTAKLLRQLAA 172
>gi|227535024|ref|ZP_03965073.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
paracasei subsp. paracasei ATCC 25302]
gi|418002171|ref|ZP_12642295.1| DinG family ATP-dependent helicase [Lactobacillus casei UCD174]
gi|227187339|gb|EEI67406.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
paracasei subsp. paracasei ATCC 25302]
gi|410544854|gb|EKQ19168.1| DinG family ATP-dependent helicase [Lactobacillus casei UCD174]
Length = 931
Score = 35.8 bits (81), Expect = 6.1, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 9/90 (10%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPD-NWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
+FVAHN FD PFL EF R + +P +DT+ LA+ L+ + S L L
Sbjct: 91 VFVAHNVN-FDYPFLNAEFER--VGLPKLQLAAIDTVELAQILLPEISSF----RLPDLT 143
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILERITS 120
Y I + + H+A SD S A +L ++ +
Sbjct: 144 SYLQIEHD-NPHQADSDAISTAKLLRQLAA 172
>gi|191638483|ref|YP_001987649.1| ATP-dependent helicase DinG [Lactobacillus casei BL23]
gi|385820191|ref|YP_005856578.1| ATP-dependent helicase [Lactobacillus casei LC2W]
gi|385823388|ref|YP_005859730.1| ATP-dependent helicase [Lactobacillus casei BD-II]
gi|190712785|emb|CAQ66791.1| ATP-dependent helicase DinG [Lactobacillus casei BL23]
gi|327382518|gb|AEA53994.1| ATP-dependent helicase [Lactobacillus casei LC2W]
gi|327385715|gb|AEA57189.1| ATP-dependent helicase [Lactobacillus casei BD-II]
Length = 928
Score = 35.8 bits (81), Expect = 6.1, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 9/90 (10%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPD-NWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
+FVAHN FD PFL EF R + +P +DT+ LA+ L+ + S L L
Sbjct: 88 VFVAHNVN-FDYPFLNAEFER--VGLPKLQLAAIDTVELAQILLPEISSF----RLPDLT 140
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILERITS 120
Y I + + H+A SD S A +L ++ +
Sbjct: 141 SYLQIEHD-NPHQADSDAISTAKLLRQLAA 169
>gi|116494972|ref|YP_806706.1| Rad3-related DNA helicase [Lactobacillus casei ATCC 334]
gi|116105122|gb|ABJ70264.1| Rad3-related DNA helicase [Lactobacillus casei ATCC 334]
Length = 928
Score = 35.8 bits (81), Expect = 6.1, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 9/90 (10%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPD-NWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
+FVAHN FD PFL EF R + +P +DT+ LA+ L+ + S L L
Sbjct: 88 VFVAHNVN-FDYPFLNAEFER--VGLPKLQLAAIDTVELAQILLPEISSF----RLPDLT 140
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILERITS 120
Y I + + H+A SD S A +L ++ +
Sbjct: 141 SYLQIEHD-NPHQADSDAISTAKLLRQLAA 169
>gi|239631428|ref|ZP_04674459.1| conserved hypothetical protein [Lactobacillus paracasei subsp.
paracasei 8700:2]
gi|239525893|gb|EEQ64894.1| conserved hypothetical protein [Lactobacillus paracasei subsp.
paracasei 8700:2]
Length = 931
Score = 35.8 bits (81), Expect = 6.1, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 9/90 (10%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPD-NWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
+FVAHN FD PFL EF R + +P +DT+ LA+ L+ + S L L
Sbjct: 91 VFVAHNVN-FDYPFLNAEFER--VGLPKLQLAAIDTVELAQILLPEISSF----RLPDLT 143
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILERITS 120
Y I + + H+A SD S A +L ++ +
Sbjct: 144 SYLQIEHD-NPHQADSDAISTAKLLRQLAA 172
>gi|441504173|ref|ZP_20986170.1| DNA polymerase III alpha subunit [Photobacterium sp. AK15]
gi|441428346|gb|ELR65811.1| DNA polymerase III alpha subunit [Photobacterium sp. AK15]
Length = 209
Score = 35.8 bits (81), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 7/91 (7%)
Query: 33 FVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREY 92
VAHNA FD FL E + + +F ++ +AR L +Q + L L +Y
Sbjct: 92 LVAHNAS-FDQRFLDAELQQIGRKY--DGKFTCSMLIARRLYQQ----APNHKLGTLVDY 144
Query: 93 FGIPLEGSAHRAMSDVNSLASILERITSDLN 123
I +G HRA++D A + I DLN
Sbjct: 145 KNIDNDGVFHRALADSEMTAKLWLNILEDLN 175
>gi|423222837|ref|ZP_17209307.1| hypothetical protein HMPREF1062_01493 [Bacteroides cellulosilyticus
CL02T12C19]
gi|392640775|gb|EIY34567.1| hypothetical protein HMPREF1062_01493 [Bacteroides cellulosilyticus
CL02T12C19]
Length = 256
Score = 35.8 bits (81), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 19/115 (16%)
Query: 37 NARRFDVPFLAKEFSRCSMNIPDNWR-FLDTLPLARELMKQNGSVSSKTSLQALREYFGI 95
N+ RFD+P LA+EF R ++I + R F+D + +L +T A + Y G
Sbjct: 94 NSNRFDIPVLAEEFLRAGVDIDLSRRKFVDVQVIFHKL-------EQRTLSAAYKFYCGK 146
Query: 96 PLEGSAHRAMSDVNSLASIL-------ERITSDLNFTLSDLLKTSFRANFDHSKK 143
LE AH A +D + +L + +D+ F L+D +SF N D + +
Sbjct: 147 NLE-DAHTAAADTQATYEVLMAQLDRYSELQNDIAF-LADY--SSFNKNVDFAGR 197
>gi|449440810|ref|XP_004138177.1| PREDICTED: uncharacterized protein LOC101203629 [Cucumis sativus]
Length = 471
Score = 35.8 bits (81), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
I+ HN RFD + + F+ + P+ +D+L L L ++ G + + L
Sbjct: 96 IWAGHNILRFDCARIREAFAEIGVPAPEPKGTIDSLAL---LTQRFGRRAGDMKMATLAS 152
Query: 92 YFGIPLEGSAHRAMSDV 108
YFGI + HR++ DV
Sbjct: 153 YFGIGQQ--THRSLDDV 167
>gi|28867695|ref|NP_790314.1| AraC family transcriptional regulator [Pseudomonas syringae pv.
tomato str. DC3000]
gi|213967762|ref|ZP_03395909.1| transcriptional regulator, AraC family [Pseudomonas syringae pv.
tomato T1]
gi|301382399|ref|ZP_07230817.1| transcriptional regulator, AraC family protein [Pseudomonas
syringae pv. tomato Max13]
gi|302061208|ref|ZP_07252749.1| transcriptional regulator, AraC family protein [Pseudomonas
syringae pv. tomato K40]
gi|302132420|ref|ZP_07258410.1| transcriptional regulator, AraC family protein [Pseudomonas
syringae pv. tomato NCPPB 1108]
gi|422656495|ref|ZP_16718941.1| transcriptional regulator, AraC family protein [Pseudomonas
syringae pv. lachrymans str. M302278]
gi|28850930|gb|AAO54009.1| transcriptional regulator, AraC family [Pseudomonas syringae pv.
tomato str. DC3000]
gi|213927538|gb|EEB61086.1| transcriptional regulator, AraC family [Pseudomonas syringae pv.
tomato T1]
gi|331015009|gb|EGH95065.1| transcriptional regulator, AraC family protein [Pseudomonas
syringae pv. lachrymans str. M302278]
Length = 367
Score = 35.8 bits (81), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 16/100 (16%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
P++++++ ++ + + E+A++VA + R+ + F +++ CS P + L
Sbjct: 224 PKLQEIVALMEANLEEPIDLDELAVYVAVSRRQLERLF--QKYLHCS---PSRYYLKLRL 278
Query: 68 PLARELMKQN-----------GSVSSKTSLQALREYFGIP 96
AR+L+KQ G VS+ + REYFGIP
Sbjct: 279 IRARQLLKQTPMSIIEVASVCGFVSTPHFSKCYREYFGIP 318
>gi|313148241|ref|ZP_07810434.1| DNA Pol III epsilon chain [Bacteroides fragilis 3_1_12]
gi|424664051|ref|ZP_18101088.1| hypothetical protein HMPREF1205_04437 [Bacteroides fragilis HMW
616]
gi|313137008|gb|EFR54368.1| DNA Pol III epsilon chain [Bacteroides fragilis 3_1_12]
gi|404576087|gb|EKA80827.1| hypothetical protein HMPREF1205_04437 [Bacteroides fragilis HMW
616]
Length = 257
Score = 35.8 bits (81), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 12/112 (10%)
Query: 37 NARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREYFGIP 96
N+ RFD+P LA+EF R ++I + R + + M+Q +T A + Y G
Sbjct: 94 NSNRFDIPVLAEEFLRAGVDIDMSKRKFVDVQVIFHKMEQ------RTLSAAYKFYCGRN 147
Query: 97 LEGSAHRAMSDVNS----LASILERITSDLNFTLSDLLK-TSFRANFDHSKK 143
LE AH A +D + L + L+R DL +S L +S+ N D + +
Sbjct: 148 LE-DAHTAEADTRATYEVLMAQLDRYPEDLQNDMSFLADYSSYNKNVDFAGR 198
>gi|423277902|ref|ZP_17256816.1| hypothetical protein HMPREF1203_01033 [Bacteroides fragilis HMW
610]
gi|404586777|gb|EKA91338.1| hypothetical protein HMPREF1203_01033 [Bacteroides fragilis HMW
610]
Length = 257
Score = 35.8 bits (81), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 12/112 (10%)
Query: 37 NARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREYFGIP 96
N+ RFD+P LA+EF R ++I + R + + M+Q +T A + Y G
Sbjct: 94 NSNRFDIPVLAEEFLRAGVDIDMSKRKFVDVQVIFHKMEQ------RTLSAAYKFYCGRN 147
Query: 97 LEGSAHRAMSDVNS----LASILERITSDLNFTLSDLLK-TSFRANFDHSKK 143
LE AH A +D + L + L+R DL +S L +S+ N D + +
Sbjct: 148 LE-DAHTAEADTRAAYEVLMAQLDRYPEDLQNDMSFLADYSSYNKNVDFAGR 198
>gi|422296473|ref|ZP_16384142.1| AraC family transcriptional regulator [Pseudomonas avellanae BPIC
631]
gi|407992366|gb|EKG34012.1| AraC family transcriptional regulator [Pseudomonas avellanae BPIC
631]
Length = 367
Score = 35.4 bits (80), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 16/100 (16%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
P++++++ ++ + + E+A++VA + R+ + F +++ CS P + L
Sbjct: 224 PKLQEIVALMEANLEEPIDLDELAVYVAVSRRQLERLF--QKYLHCS---PSRYYLKLRL 278
Query: 68 PLARELMKQN-----------GSVSSKTSLQALREYFGIP 96
AR+L+KQ G VS+ + REYFGIP
Sbjct: 279 IRARQLLKQTPMSIIEVASVCGFVSTPHFSKCYREYFGIP 318
>gi|395495308|ref|ZP_10426887.1| AraC family transcriptional regulator [Pseudomonas sp. PAMC 25886]
gi|395794574|ref|ZP_10473895.1| AraC family transcriptional regulator [Pseudomonas sp. Ag1]
gi|421142601|ref|ZP_15602575.1| Transcriptional Regulator, AraC family protein [Pseudomonas
fluorescens BBc6R8]
gi|395341239|gb|EJF73059.1| AraC family transcriptional regulator [Pseudomonas sp. Ag1]
gi|404506274|gb|EKA20270.1| Transcriptional Regulator, AraC family protein [Pseudomonas
fluorescens BBc6R8]
Length = 367
Score = 35.4 bits (80), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 16/100 (16%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
P++++++ ++ + + E+A++VA + R+ + F +++ CS P + L
Sbjct: 224 PKLQEIVALMEANLEEPIDLDELAVYVAVSRRQLERLF--QKYLHCS---PSRYYLKLRL 278
Query: 68 PLARELMKQN-----------GSVSSKTSLQALREYFGIP 96
AR+L+KQ G VS+ + REYFGIP
Sbjct: 279 IRARQLLKQTPMSIIEVASVCGFVSTPHFSKCYREYFGIP 318
>gi|440739232|ref|ZP_20918752.1| AraC family transcriptional regulator [Pseudomonas fluorescens
BRIP34879]
gi|447918732|ref|YP_007399300.1| AraC family transcriptional regulator [Pseudomonas poae RE*1-1-14]
gi|440380045|gb|ELQ16620.1| AraC family transcriptional regulator [Pseudomonas fluorescens
BRIP34879]
gi|445202595|gb|AGE27804.1| AraC family transcriptional regulator [Pseudomonas poae RE*1-1-14]
Length = 366
Score = 35.4 bits (80), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 16/100 (16%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
P++++++ ++ + + E+A++VA + R+ + F +++ CS P + L
Sbjct: 224 PKLQEIVALMEANLEEPIDLDELAVYVAVSRRQLERLF--QKYLHCS---PSRYYLKLRL 278
Query: 68 PLARELMKQN-----------GSVSSKTSLQALREYFGIP 96
AR+L+KQ G VS+ + REYFGIP
Sbjct: 279 IRARQLLKQTPMSIIEVASVCGFVSTPHFSKCYREYFGIP 318
>gi|350412010|ref|XP_003489515.1| PREDICTED: hypothetical protein LOC100743466 [Bombus impatiens]
Length = 326
Score = 35.4 bits (80), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 12 DLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLAR 71
D+ +V+ ++N P A F+A+N +D P EF N +N +D + L +
Sbjct: 85 DIYNLVLNFINRLAAP---ACFIAYNGNNYDYPIFLSEFKNIEKNFSENVLSIDMMHLVK 141
Query: 72 EL 73
E
Sbjct: 142 EF 143
>gi|398997150|ref|ZP_10699981.1| transcriptional regulator containing an amidase domain and an
AraC-type DNA-binding HTH domain [Pseudomonas sp. GM21]
gi|398124815|gb|EJM14316.1| transcriptional regulator containing an amidase domain and an
AraC-type DNA-binding HTH domain [Pseudomonas sp. GM21]
Length = 367
Score = 35.4 bits (80), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 16/100 (16%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
P++++++ ++ + + E+A++VA + R+ + F +++ CS P + L
Sbjct: 224 PKLQEIVALMEANLEEPIDLDELAVYVAVSRRQLERLF--QKYLHCS---PSRYYLKLRL 278
Query: 68 PLARELMKQN-----------GSVSSKTSLQALREYFGIP 96
AR+L+KQ G VS+ + REYFGIP
Sbjct: 279 IRARQLLKQTPMSIIEVASVCGFVSTPHFSKCYREYFGIP 318
>gi|395650626|ref|ZP_10438476.1| AraC family transcriptional regulator [Pseudomonas extremaustralis
14-3 substr. 14-3b]
Length = 367
Score = 35.4 bits (80), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 16/100 (16%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
P++++++ ++ + + E+A++VA + R+ + F +++ CS P + L
Sbjct: 224 PKLQEIVALMEANLEEPIDLDELAVYVAVSRRQLERLF--QKYLHCS---PSRYYLKLRL 278
Query: 68 PLARELMKQN-----------GSVSSKTSLQALREYFGIP 96
AR+L+KQ G VS+ + REYFGIP
Sbjct: 279 IRARQLLKQTPMSIIEVASVCGFVSTPHFSKCYREYFGIP 318
>gi|440743386|ref|ZP_20922696.1| AraC family transcriptional regulator [Pseudomonas syringae
BRIP39023]
gi|440375495|gb|ELQ12200.1| AraC family transcriptional regulator [Pseudomonas syringae
BRIP39023]
Length = 367
Score = 35.4 bits (80), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 16/100 (16%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
P++++++ ++ + + E+A++VA + R+ + F +++ CS P + L
Sbjct: 224 PKLQEIVALMEANLEEPIDLDELAVYVAVSRRQLERLF--QKYLHCS---PSRYYLKLRL 278
Query: 68 PLARELMKQN-----------GSVSSKTSLQALREYFGIP 96
AR+L+KQ G VS+ + REYFGIP
Sbjct: 279 IRARQLLKQTPMSIIEVASVCGFVSTPHFSKCYREYFGIP 318
>gi|395789047|ref|ZP_10468577.1| DNA polymerase III, epsilon subunit [Bartonella taylorii 8TBB]
gi|395431181|gb|EJF97208.1| DNA polymerase III, epsilon subunit [Bartonella taylorii 8TBB]
Length = 235
Score = 35.4 bits (80), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 48/116 (41%), Gaps = 9/116 (7%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
A +AHNA FD+ FL E R + + LDTL +AR SL L
Sbjct: 84 ATMIAHNAS-FDIGFLNAELERVNKPLISVDNILDTLAMARRKFPM-----GPNSLDVLC 137
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILERITSDLNFTLSDLLKTSFRANFDHSKKNKK 146
+ FGI ++HR + A IL + +L +L R + D +N K
Sbjct: 138 KRFGID---NSHRVLHGALLDAEILADVYIELIGGKQGVLGFDNRESIDEDTQNDK 190
>gi|417985088|ref|ZP_12625691.1| exonuclease [Lactobacillus casei 21/1]
gi|410522472|gb|EKP97419.1| exonuclease [Lactobacillus casei 21/1]
Length = 172
Score = 35.4 bits (80), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 42 DVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREYFGIPLEGSA 101
D + + F + S +IP NW+F+D +++++ S ++ LQ L GIP+
Sbjct: 93 DAGRIRETFKKGSHDIPKNWKFIDIA----DIVEKRYSFNATPPLQGLANVLGIPVN-RT 147
Query: 102 HRAMSD 107
H A+ D
Sbjct: 148 HNALDD 153
>gi|409402570|ref|ZP_11252107.1| DNA polymerase III subunit epsilon [Acidocella sp. MX-AZ02]
gi|409128847|gb|EKM98725.1| DNA polymerase III subunit epsilon [Acidocella sp. MX-AZ02]
Length = 228
Score = 35.4 bits (80), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 39/89 (43%), Gaps = 7/89 (7%)
Query: 33 FVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREY 92
VAHNA FD F++ E R D R +DTL LA++ SL AL
Sbjct: 87 LVAHNAP-FDFGFISAELQRIGRPPLDKARMIDTLVLAKQRFP-----GMPNSLDALCRR 140
Query: 93 FGIPLEG-SAHRAMSDVNSLASILERITS 120
F I L + H A+ D LA + +T
Sbjct: 141 FEIDLSARTTHNALLDCKLLAEVYVELTG 169
>gi|423093248|ref|ZP_17081044.1| transcriptional regulator GbdR [Pseudomonas fluorescens Q2-87]
gi|423699792|ref|ZP_17674282.1| transcriptional regulator GbdR [Pseudomonas fluorescens Q8r1-96]
gi|387996010|gb|EIK57340.1| transcriptional regulator GbdR [Pseudomonas fluorescens Q8r1-96]
gi|397882650|gb|EJK99137.1| transcriptional regulator GbdR [Pseudomonas fluorescens Q2-87]
Length = 367
Score = 35.4 bits (80), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 16/100 (16%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
P++++++ ++ + + E+A++VA + R+ + F +++ CS P + L
Sbjct: 224 PKLQEIVALMEANLEEPIDLDELAVYVAVSRRQLERLF--QKYLHCS---PSRYYLKLRL 278
Query: 68 PLARELMKQN-----------GSVSSKTSLQALREYFGIP 96
AR+L+KQ G VS+ + REYFGIP
Sbjct: 279 IRARQLLKQTPMSIIEVASVCGFVSTPHFSKCYREYFGIP 318
>gi|395780493|ref|ZP_10460955.1| DNA polymerase III, epsilon subunit [Bartonella washoensis
085-0475]
gi|395418839|gb|EJF85156.1| DNA polymerase III, epsilon subunit [Bartonella washoensis
085-0475]
Length = 235
Score = 35.4 bits (80), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 47/116 (40%), Gaps = 9/116 (7%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
A +AHNA FD+ FL E R + + +DTL +AR SL L
Sbjct: 84 ATMIAHNAS-FDIGFLNAELGRVNKPLISVDNIIDTLAMARRKFPM-----GPNSLDVLC 137
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILERITSDLNFTLSDLLKTSFRANFDHSKKNKK 146
+ FGI ++HR + A IL + +L +L N D +N K
Sbjct: 138 KRFGID---NSHRVLHGALLDAEILADVYIELIGGKQGVLGFDNSGNIDEDTQNDK 190
>gi|422588429|ref|ZP_16663097.1| AraC family transcriptional regulator [Pseudomonas syringae pv.
morsprunorum str. M302280]
gi|422652414|ref|ZP_16715198.1| AraC family transcriptional regulator [Pseudomonas syringae pv.
actinidiae str. M302091]
gi|330874758|gb|EGH08907.1| AraC family transcriptional regulator [Pseudomonas syringae pv.
morsprunorum str. M302280]
gi|330965481|gb|EGH65741.1| AraC family transcriptional regulator [Pseudomonas syringae pv.
actinidiae str. M302091]
Length = 367
Score = 35.4 bits (80), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 16/100 (16%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
P++++++ ++ + + E+A++VA + R+ + F +++ CS P + L
Sbjct: 224 PKLQEIVALMEANLEEPIDLDELAVYVAVSRRQLERLF--QKYLHCS---PSRYYLKLRL 278
Query: 68 PLARELMKQN-----------GSVSSKTSLQALREYFGIP 96
AR+L+KQ G VS+ + REYFGIP
Sbjct: 279 IRARQLLKQTPMSIIEVASVCGFVSTPHFSKCYREYFGIP 318
>gi|330812270|ref|YP_004356732.1| AraC family transcriptional regulator [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
gi|378953339|ref|YP_005210827.1| protein GbdR [Pseudomonas fluorescens F113]
gi|327380378|gb|AEA71728.1| putative transcriptional regulator, AraC family [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
gi|359763353|gb|AEV65432.1| GbdR [Pseudomonas fluorescens F113]
Length = 367
Score = 35.4 bits (80), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 16/100 (16%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
P++++++ ++ + + E+A++VA + R+ + F +++ CS P + L
Sbjct: 224 PKLQEIVALMEANLEEPIDLDELAVYVAVSRRQLERLF--QKYLHCS---PSRYYLKLRL 278
Query: 68 PLARELMKQN-----------GSVSSKTSLQALREYFGIP 96
AR+L+KQ G VS+ + REYFGIP
Sbjct: 279 IRARQLLKQTPMSIIEVASVCGFVSTPHFSKCYREYFGIP 318
>gi|302188553|ref|ZP_07265226.1| helix-turn-helix, AraC type:ThiJ/PfpI [Pseudomonas syringae pv.
syringae 642]
Length = 367
Score = 35.4 bits (80), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 16/100 (16%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
P++++++ ++ + + E+A++VA + R+ + F +++ CS P + L
Sbjct: 224 PKLQEIVALMEANLEEPIDLDELAVYVAVSRRQLERLF--QKYLHCS---PSRYYLKLRL 278
Query: 68 PLARELMKQN-----------GSVSSKTSLQALREYFGIP 96
AR+L+KQ G VS+ + REYFGIP
Sbjct: 279 IRARQLLKQTPMSIIEVASVCGFVSTPHFSKCYREYFGIP 318
>gi|77461457|ref|YP_350964.1| transcriptional regulator [Pseudomonas fluorescens Pf0-1]
gi|77385460|gb|ABA76973.1| AraC family regulatory protein [Pseudomonas fluorescens Pf0-1]
Length = 367
Score = 35.4 bits (80), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 16/100 (16%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
P++++++ ++ + + E+A++VA + R+ + F +++ CS P + L
Sbjct: 224 PKLQEIVALMEANLEEPIDLDELAVYVAVSRRQLERLF--QKYLHCS---PSRYYLKLRL 278
Query: 68 PLARELMKQN-----------GSVSSKTSLQALREYFGIP 96
AR+L+KQ G VS+ + REYFGIP
Sbjct: 279 IRARQLLKQTPMSIIEVASVCGFVSTPHFSKCYREYFGIP 318
>gi|398886213|ref|ZP_10641100.1| transcriptional regulator containing an amidase domain and an
AraC-type DNA-binding HTH domain [Pseudomonas sp. GM60]
gi|398190328|gb|EJM77558.1| transcriptional regulator containing an amidase domain and an
AraC-type DNA-binding HTH domain [Pseudomonas sp. GM60]
Length = 367
Score = 35.4 bits (80), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 16/100 (16%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
P++++++ ++ + + E+A++VA + R+ + F +++ CS P + L
Sbjct: 224 PKLQEIVALMEANLEEPIDLDELAVYVAVSRRQLERLF--QKYLHCS---PSRYYLKLRL 278
Query: 68 PLARELMKQN-----------GSVSSKTSLQALREYFGIP 96
AR+L+KQ G VS+ + REYFGIP
Sbjct: 279 IRARQLLKQTPMSIIEVASVCGFVSTPHFSKCYREYFGIP 318
>gi|398940845|ref|ZP_10669487.1| transcriptional regulator containing an amidase domain and an
AraC-type DNA-binding HTH domain [Pseudomonas sp.
GM41(2012)]
gi|398162289|gb|EJM50489.1| transcriptional regulator containing an amidase domain and an
AraC-type DNA-binding HTH domain [Pseudomonas sp.
GM41(2012)]
Length = 367
Score = 35.4 bits (80), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 16/100 (16%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
P++++++ ++ + + E+A++VA + R+ + F +++ CS P + L
Sbjct: 224 PKLQEIVALMEANLEEPIDLDELAVYVAVSRRQLERLF--QKYLHCS---PSRYYLKLRL 278
Query: 68 PLARELMKQN-----------GSVSSKTSLQALREYFGIP 96
AR+L+KQ G VS+ + REYFGIP
Sbjct: 279 IRARQLLKQTPMSIIEVASVCGFVSTPHFSKCYREYFGIP 318
>gi|312963525|ref|ZP_07778007.1| transcriptional regulator, AraC family [Pseudomonas fluorescens
WH6]
gi|311282331|gb|EFQ60930.1| transcriptional regulator, AraC family [Pseudomonas fluorescens
WH6]
Length = 367
Score = 35.4 bits (80), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 16/100 (16%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
P++++++ ++ + + E+A++VA + R+ + F +++ CS P + L
Sbjct: 224 PKLQEIVALMEANLEEPIDLDELAVYVAVSRRQLERLF--QKYLHCS---PSRYYLKLRL 278
Query: 68 PLARELMKQN-----------GSVSSKTSLQALREYFGIP 96
AR+L+KQ G VS+ + REYFGIP
Sbjct: 279 IRARQLLKQTPMSIIEVASVCGFVSTPHFSKCYREYFGIP 318
>gi|229593052|ref|YP_002875171.1| putative AraC family regulatory protein [Pseudomonas fluorescens
SBW25]
gi|388468238|ref|ZP_10142448.1| transcriptional regulator GbdR [Pseudomonas synxantha BG33R]
gi|408479438|ref|ZP_11185657.1| AraC family transcriptional regulator [Pseudomonas sp. R81]
gi|229364918|emb|CAY53009.1| putative AraC-family regulatory protein [Pseudomonas fluorescens
SBW25]
gi|388011818|gb|EIK73005.1| transcriptional regulator GbdR [Pseudomonas synxantha BG33R]
Length = 367
Score = 35.4 bits (80), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 16/100 (16%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
P++++++ ++ + + E+A++VA + R+ + F +++ CS P + L
Sbjct: 224 PKLQEIVALMEANLEEPIDLDELAVYVAVSRRQLERLF--QKYLHCS---PSRYYLKLRL 278
Query: 68 PLARELMKQN-----------GSVSSKTSLQALREYFGIP 96
AR+L+KQ G VS+ + REYFGIP
Sbjct: 279 IRARQLLKQTPMSIIEVASVCGFVSTPHFSKCYREYFGIP 318
>gi|162449983|ref|YP_001612350.1| exonuclease [Sorangium cellulosum So ce56]
gi|161160565|emb|CAN91870.1| exonuclease [Sorangium cellulosum So ce56]
Length = 298
Score = 35.4 bits (80), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 47/96 (48%), Gaps = 12/96 (12%)
Query: 29 EIAIFVAHNARRFDVPFLAKEFSRC--SMNIPDNWRFLDTLPLARELMKQNGSVSSKTSL 86
E A+ VAH A +DV FL E +R + +P +LDTL L+R SL
Sbjct: 109 EGAVLVAHAAA-WDVAFLEAELARAGRARRLP---HYLDTLVLSRRAFAL-----PSHSL 159
Query: 87 QALREYFGIPLEGSAHRAMSDVNSLASILERITSDL 122
+L G+ E AHRA DV++L ++ +I L
Sbjct: 160 ASLCRELGVHRE-RAHRAEDDVHALRAVFRKIVEVL 194
>gi|386265504|ref|YP_005828996.1| DNA polymerase III subunit epsilon [Haemophilus influenzae R2846]
gi|309972740|gb|ADO95941.1| DNA polymerase III, epsilon subunit [Haemophilus influenzae R2846]
Length = 255
Score = 35.4 bits (80), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 16/116 (13%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIP--DNWRFLD 65
P +D+ + Y+N A + HNA FDV F+ EF + ++N+ D D
Sbjct: 76 PEFKDVAQDFLDYING-------AELLIHNAP-FDVGFMDYEFRKLNLNVKTDDICLVTD 127
Query: 66 TLPLARELMKQNGSVSSKTSLQALREYFGIP-LEGSAHRAMSDVNSLASILERITS 120
TL +AR++ + +L AL + GI + + H A+ D LA + +T
Sbjct: 128 TLQMARQMYP-----GKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLMMTG 178
>gi|66047932|ref|YP_237773.1| AraC family transcriptional regulator [Pseudomonas syringae pv.
syringae B728a]
gi|422673179|ref|ZP_16732540.1| helix-turn-helix, AraC type:ThiJ/PfpI [Pseudomonas syringae pv.
aceris str. M302273]
gi|424068289|ref|ZP_17805745.1| AraC family transcriptional regulator [Pseudomonas syringae pv.
avellanae str. ISPaVe013]
gi|424074389|ref|ZP_17811798.1| AraC family transcriptional regulator [Pseudomonas syringae pv.
avellanae str. ISPaVe037]
gi|443641875|ref|ZP_21125725.1| Transcriptional regulator containing an amidase domain and an
AraC-type DNA-binding HTH domain [Pseudomonas syringae
pv. syringae B64]
gi|63258639|gb|AAY39735.1| transcriptional regulator, AraC family with amidase-like domain
protein [Pseudomonas syringae pv. syringae B728a]
gi|330970914|gb|EGH70980.1| helix-turn-helix, AraC type:ThiJ/PfpI [Pseudomonas syringae pv.
aceris str. M302273]
gi|407994371|gb|EKG34950.1| AraC family transcriptional regulator [Pseudomonas syringae pv.
avellanae str. ISPaVe037]
gi|407998378|gb|EKG38793.1| AraC family transcriptional regulator [Pseudomonas syringae pv.
avellanae str. ISPaVe013]
gi|443281892|gb|ELS40897.1| Transcriptional regulator containing an amidase domain and an
AraC-type DNA-binding HTH domain [Pseudomonas syringae
pv. syringae B64]
Length = 367
Score = 35.4 bits (80), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 16/100 (16%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
P++++++ ++ + + E+A++VA + R+ + F +++ CS P + L
Sbjct: 224 PKLQEIVALMEANLEEPIDLDELAVYVAVSRRQLERLF--QKYLHCS---PSRYYLKLRL 278
Query: 68 PLARELMKQN-----------GSVSSKTSLQALREYFGIP 96
AR+L+KQ G VS+ + REYFGIP
Sbjct: 279 IRARQLLKQTPMSIIEVASVCGFVSTPHFSKCYREYFGIP 318
>gi|398981125|ref|ZP_10689309.1| transcriptional regulator containing an amidase domain and an
AraC-type DNA-binding HTH domain [Pseudomonas sp. GM25]
gi|398133843|gb|EJM23024.1| transcriptional regulator containing an amidase domain and an
AraC-type DNA-binding HTH domain [Pseudomonas sp. GM25]
Length = 367
Score = 35.4 bits (80), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 16/100 (16%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
P++++++ ++ + + E+A++VA + R+ + F +++ CS P + L
Sbjct: 224 PKLQEIVALMEANLEEPIDLDELAVYVAVSRRQLERLF--QKYLHCS---PSRYYLKLRL 278
Query: 68 PLARELMKQN-----------GSVSSKTSLQALREYFGIP 96
AR+L+KQ G VS+ + REYFGIP
Sbjct: 279 IRARQLLKQTPMSIIEVASVCGFVSTPHFSKCYREYFGIP 318
>gi|386009956|ref|YP_005928233.1| AraC family transcriptional regulator [Pseudomonas putida BIRD-1]
gi|395446664|ref|YP_006386917.1| AraC family transcriptional regulator [Pseudomonas putida ND6]
gi|397695301|ref|YP_006533182.1| AraC family transcriptional regulator [Pseudomonas putida DOT-T1E]
gi|313496662|gb|ADR58028.1| AraC family transcriptional regulator [Pseudomonas putida BIRD-1]
gi|388560661|gb|AFK69802.1| AraC family transcriptional regulator [Pseudomonas putida ND6]
gi|397332031|gb|AFO48390.1| AraC family transcriptional regulator [Pseudomonas putida DOT-T1E]
Length = 345
Score = 35.4 bits (80), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 16/100 (16%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
P++++++ ++ + + E+A++VA + R+ + F +++ CS P + L
Sbjct: 202 PKLQEIVALMEANLEEPIDLDELAVYVAVSRRQLERLF--QKYLHCS---PSRYYLKLRL 256
Query: 68 PLARELMKQN-----------GSVSSKTSLQALREYFGIP 96
AR+L+KQ G VS+ + REYFGIP
Sbjct: 257 IRARQLLKQTPMSIIEVASVCGFVSTPHFSKCYREYFGIP 296
>gi|104784098|ref|YP_610596.1| AraC family transcriptional regulator [Pseudomonas entomophila L48]
gi|95113085|emb|CAK17813.1| putative transcriptional regulator, AraC family [Pseudomonas
entomophila L48]
Length = 368
Score = 35.4 bits (80), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 16/100 (16%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
P++++++ ++ + + E+A++VA + R+ + F +++ CS P + L
Sbjct: 225 PKLQEIVALMEANLEEPIDLDELAVYVAVSRRQLERLF--QKYLHCS---PSRYYLKLRL 279
Query: 68 PLARELMKQN-----------GSVSSKTSLQALREYFGIP 96
AR+L+KQ G VS+ + REYFGIP
Sbjct: 280 IRARQLLKQTPMSIIEVASVCGFVSTPHFSKCYREYFGIP 319
>gi|422642559|ref|ZP_16705976.1| helix-turn-helix, AraC type:ThiJ/PfpI [Pseudomonas syringae Cit 7]
gi|330954940|gb|EGH55200.1| helix-turn-helix, AraC type:ThiJ/PfpI [Pseudomonas syringae Cit 7]
Length = 367
Score = 35.4 bits (80), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 16/100 (16%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
P++++++ ++ + + E+A++VA + R+ + F +++ CS P + L
Sbjct: 224 PKLQEIVALMEANLEEPIDLDELAVYVAVSRRQLERLF--QKYLHCS---PSRYYLKLRL 278
Query: 68 PLARELMKQN-----------GSVSSKTSLQALREYFGIP 96
AR+L+KQ G VS+ + REYFGIP
Sbjct: 279 IRARQLLKQTPMSIIEVASVCGFVSTPHFSKCYREYFGIP 318
>gi|71734370|ref|YP_276845.1| AraC family transcriptional regulator [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|71554923|gb|AAZ34134.1| transcriptional regulator, AraC family [Pseudomonas syringae pv.
phaseolicola 1448A]
Length = 367
Score = 35.4 bits (80), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 16/100 (16%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
P++++++ ++ + + E+A++VA + R+ + F +++ CS P + L
Sbjct: 224 PKLQEIVALMEANLEEPIDLDELAVYVAVSRRQLERLF--QKYLHCS---PSRYYLKLRL 278
Query: 68 PLARELMKQN-----------GSVSSKTSLQALREYFGIP 96
AR+L+KQ G VS+ + REYFGIP
Sbjct: 279 IRARQLLKQTPMSIIEVASVCGFVSTPHFSKCYREYFGIP 318
>gi|70733045|ref|YP_262818.1| transcriptional regulator GbdR [Pseudomonas protegens Pf-5]
gi|68347344|gb|AAY94950.1| transcriptional regulator GbdR [Pseudomonas protegens Pf-5]
Length = 367
Score = 35.4 bits (80), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 16/100 (16%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
P++++++ ++ + + E+A++VA + R+ + F +++ CS P + L
Sbjct: 224 PKLQEIVALMEANLEEPIDLDELAVYVAVSRRQLERLF--QKYLHCS---PSRYYLKLRL 278
Query: 68 PLARELMKQN-----------GSVSSKTSLQALREYFGIP 96
AR+L+KQ G VS+ + REYFGIP
Sbjct: 279 IRARQLLKQTPMSIIEVASVCGFVSTPHFSKCYREYFGIP 318
>gi|421525052|ref|ZP_15971673.1| AraC family transcriptional regulator [Pseudomonas putida LS46]
gi|402751515|gb|EJX12028.1| AraC family transcriptional regulator [Pseudomonas putida LS46]
Length = 368
Score = 35.4 bits (80), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 16/100 (16%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
P++++++ ++ + + E+A++VA + R+ + F +++ CS P + L
Sbjct: 225 PKLQEIVALMEANLEEPIDLDELAVYVAVSRRQLERLF--QKYLHCS---PSRYYLKLRL 279
Query: 68 PLARELMKQN-----------GSVSSKTSLQALREYFGIP 96
AR+L+KQ G VS+ + REYFGIP
Sbjct: 280 IRARQLLKQTPMSIIEVASVCGFVSTPHFSKCYREYFGIP 319
>gi|398880999|ref|ZP_10636016.1| transcriptional regulator containing an amidase domain and an
AraC-type DNA-binding HTH domain [Pseudomonas sp. GM67]
gi|398190897|gb|EJM78106.1| transcriptional regulator containing an amidase domain and an
AraC-type DNA-binding HTH domain [Pseudomonas sp. GM67]
Length = 367
Score = 35.4 bits (80), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 16/100 (16%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
P++++++ ++ + + E+A++VA + R+ + F +++ CS P + L
Sbjct: 224 PKLQEIVALMEANLEEPIDLDELAVYVAVSRRQLERLF--QKYLHCS---PSRYYLKLRL 278
Query: 68 PLARELMKQN-----------GSVSSKTSLQALREYFGIP 96
AR+L+KQ G VS+ + REYFGIP
Sbjct: 279 IRARQLLKQTPMSIIEVASVCGFVSTPHFSKCYREYFGIP 318
>gi|148545573|ref|YP_001265675.1| AraC family transcriptional regulator [Pseudomonas putida F1]
gi|148509631|gb|ABQ76491.1| transcriptional regulator, AraC family with amidase-like domain
[Pseudomonas putida F1]
Length = 368
Score = 35.4 bits (80), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 16/100 (16%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
P++++++ ++ + + E+A++VA + R+ + F +++ CS P + L
Sbjct: 225 PKLQEIVALMEANLEEPIDLDELAVYVAVSRRQLERLF--QKYLHCS---PSRYYLKLRL 279
Query: 68 PLARELMKQN-----------GSVSSKTSLQALREYFGIP 96
AR+L+KQ G VS+ + REYFGIP
Sbjct: 280 IRARQLLKQTPMSIIEVASVCGFVSTPHFSKCYREYFGIP 319
>gi|451940049|ref|YP_007460687.1| DNA polymerase III subunit epsilon [Bartonella australis Aust/NH1]
gi|451899436|gb|AGF73899.1| DNA polymerase III subunit epsilon [Bartonella australis Aust/NH1]
Length = 234
Score = 35.4 bits (80), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 44/98 (44%), Gaps = 7/98 (7%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
A+ +AHNA FDV FL E R + + +DTL +AR SL +L
Sbjct: 84 AVIIAHNAS-FDVSFLNAELERINKPLISINNVIDTLAMARRKFPL-----GPNSLDSLC 137
Query: 91 EYFGIP-LEGSAHRAMSDVNSLASILERITSDLNFTLS 127
+ FG+ S H A+ D LA + +T TL+
Sbjct: 138 KRFGVDNSHRSLHGALLDAEILAGVYIELTGGKQGTLN 175
>gi|416013990|ref|ZP_11561922.1| AraC family transcriptional regulator [Pseudomonas syringae pv.
glycinea str. B076]
gi|416024373|ref|ZP_11568465.1| AraC family transcriptional regulator [Pseudomonas syringae pv.
glycinea str. race 4]
gi|422403517|ref|ZP_16480575.1| AraC family transcriptional regulator [Pseudomonas syringae pv.
glycinea str. race 4]
gi|320326408|gb|EFW82461.1| AraC family transcriptional regulator [Pseudomonas syringae pv.
glycinea str. B076]
gi|320330621|gb|EFW86599.1| AraC family transcriptional regulator [Pseudomonas syringae pv.
glycinea str. race 4]
gi|330874162|gb|EGH08311.1| AraC family transcriptional regulator [Pseudomonas syringae pv.
glycinea str. race 4]
Length = 367
Score = 35.4 bits (80), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 16/100 (16%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
P++++++ ++ + + E+A++VA + R+ + F +++ CS P + L
Sbjct: 224 PKLQEIVALMEANLEEPIDLDELAVYVAVSRRQLERLF--QKYLHCS---PSRYYLKLRL 278
Query: 68 PLARELMKQN-----------GSVSSKTSLQALREYFGIP 96
AR+L+KQ G VS+ + REYFGIP
Sbjct: 279 IRARQLLKQTPMSIIEVASVCGFVSTPHFSKCYREYFGIP 318
>gi|257483036|ref|ZP_05637077.1| AraC family transcriptional regulator [Pseudomonas syringae pv.
tabaci str. ATCC 11528]
gi|289624804|ref|ZP_06457758.1| AraC family transcriptional regulator [Pseudomonas syringae pv.
aesculi str. NCPPB 3681]
gi|289650619|ref|ZP_06481962.1| AraC family transcriptional regulator [Pseudomonas syringae pv.
aesculi str. 2250]
gi|422585828|ref|ZP_16660885.1| AraC family transcriptional regulator [Pseudomonas syringae pv.
aesculi str. 0893_23]
gi|422595567|ref|ZP_16669854.1| AraC family transcriptional regulator [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|422607664|ref|ZP_16679661.1| AraC family transcriptional regulator [Pseudomonas syringae pv.
mori str. 301020]
gi|422682388|ref|ZP_16740654.1| AraC family transcriptional regulator [Pseudomonas syringae pv.
tabaci str. ATCC 11528]
gi|298156289|gb|EFH97390.1| Transcriptional regulator, AraC family [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|330871166|gb|EGH05875.1| AraC family transcriptional regulator [Pseudomonas syringae pv.
aesculi str. 0893_23]
gi|330891303|gb|EGH23964.1| AraC family transcriptional regulator [Pseudomonas syringae pv.
mori str. 301020]
gi|330985871|gb|EGH83974.1| AraC family transcriptional regulator [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|331011728|gb|EGH91784.1| AraC family transcriptional regulator [Pseudomonas syringae pv.
tabaci str. ATCC 11528]
Length = 367
Score = 35.4 bits (80), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 16/100 (16%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
P++++++ ++ + + E+A++VA + R+ + F +++ CS P + L
Sbjct: 224 PKLQEIVALMEANLEEPIDLDELAVYVAVSRRQLERLF--QKYLHCS---PSRYYLKLRL 278
Query: 68 PLARELMKQN-----------GSVSSKTSLQALREYFGIP 96
AR+L+KQ G VS+ + REYFGIP
Sbjct: 279 IRARQLLKQTPMSIIEVASVCGFVSTPHFSKCYREYFGIP 318
>gi|170724067|ref|YP_001751755.1| AraC family transcriptional regulator [Pseudomonas putida W619]
gi|169762070|gb|ACA75386.1| transcriptional regulator, AraC family [Pseudomonas putida W619]
Length = 368
Score = 35.4 bits (80), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 16/100 (16%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
P++++++ ++ + + E+A++VA + R+ + F +++ CS P + L
Sbjct: 225 PKLQEIVALMEANLEEPIDLDELAVYVAVSRRQLERLF--QKYLHCS---PSRYYLKLRL 279
Query: 68 PLARELMKQN-----------GSVSSKTSLQALREYFGIP 96
AR+L+KQ G VS+ + REYFGIP
Sbjct: 280 IRARQLLKQTPMSIIEVASVCGFVSTPHFSKCYREYFGIP 319
>gi|309791196|ref|ZP_07685728.1| DNA polymerase III, epsilon subunit [Oscillochloris trichoides
DG-6]
gi|308226758|gb|EFO80454.1| DNA polymerase III, epsilon subunit [Oscillochloris trichoides DG6]
Length = 272
Score = 35.4 bits (80), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 13/105 (12%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
A+ +AHN FD+ FL E +R P LDT ++ + SL AL
Sbjct: 94 AVLIAHNLP-FDMAFLNAELARIGQP-PLASVTLDT-----LVLARRLLRRPSYSLAALA 146
Query: 91 EYFGIPLEGSAHRAMSDVNSLASI---LERITSDLNF-TLSDLLK 131
E+FG+P HRA++DV +L + L+ ++L TL D+L+
Sbjct: 147 EHFGLPR--PTHRALADVLALRGVFAQLQLAMAELGVTTLQDVLR 189
>gi|410094217|ref|ZP_11290665.1| AraC family transcriptional regulator [Pseudomonas viridiflava
UASWS0038]
gi|409758357|gb|EKN43667.1| AraC family transcriptional regulator [Pseudomonas viridiflava
UASWS0038]
Length = 367
Score = 35.4 bits (80), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 16/100 (16%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
P++++++ ++ + + E+A++VA + R+ + F +++ CS P + L
Sbjct: 224 PKLQEIVALMEANLEEPIDLDELAVYVAVSRRQLERLF--QKYLHCS---PSRYYLKLRL 278
Query: 68 PLARELMKQN-----------GSVSSKTSLQALREYFGIP 96
AR+L+KQ G VS+ + REYFGIP
Sbjct: 279 IRARQLLKQTPMSIIEVASVCGFVSTPHFSKCYREYFGIP 318
>gi|398844710|ref|ZP_10601767.1| transcriptional regulator containing an amidase domain and an
AraC-type DNA-binding HTH domain [Pseudomonas sp. GM84]
gi|398254321|gb|EJN39421.1| transcriptional regulator containing an amidase domain and an
AraC-type DNA-binding HTH domain [Pseudomonas sp. GM84]
Length = 368
Score = 35.4 bits (80), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 16/100 (16%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
P++++++ ++ + + E+A++VA + R+ + F +++ CS P + L
Sbjct: 225 PKLQEIVALMEANLEEPIDLDELAVYVAVSRRQLERLF--QKYLHCS---PSRYYLKLRL 279
Query: 68 PLARELMKQN-----------GSVSSKTSLQALREYFGIP 96
AR+L+KQ G VS+ + REYFGIP
Sbjct: 280 IRARQLLKQTPMSIIEVASVCGFVSTPHFSKCYREYFGIP 319
>gi|387896065|ref|YP_006326362.1| transcriptional regulator GbdR [Pseudomonas fluorescens A506]
gi|423693999|ref|ZP_17668519.1| transcriptional regulator GbdR [Pseudomonas fluorescens SS101]
gi|387161895|gb|AFJ57094.1| transcriptional regulator GbdR [Pseudomonas fluorescens A506]
gi|388000306|gb|EIK61635.1| transcriptional regulator GbdR [Pseudomonas fluorescens SS101]
Length = 367
Score = 35.4 bits (80), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 16/100 (16%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
P++++++ ++ + + E+A++VA + R+ + F +++ CS P + L
Sbjct: 224 PKLQEIVALMEANLEEPIDLDELAVYVAVSRRQLERLF--QKYLHCS---PSRYYLKLRL 278
Query: 68 PLARELMKQN-----------GSVSSKTSLQALREYFGIP 96
AR+L+KQ G VS+ + REYFGIP
Sbjct: 279 IRARQLLKQTPMSIIEVASVCGFVSTPHFSKCYREYFGIP 318
>gi|440724161|ref|ZP_20904498.1| AraC family transcriptional regulator [Pseudomonas syringae
BRIP34876]
gi|440726851|ref|ZP_20907095.1| AraC family transcriptional regulator [Pseudomonas syringae
BRIP34881]
gi|440358310|gb|ELP95685.1| AraC family transcriptional regulator [Pseudomonas syringae
BRIP34876]
gi|440365291|gb|ELQ02403.1| AraC family transcriptional regulator [Pseudomonas syringae
BRIP34881]
Length = 367
Score = 35.4 bits (80), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 16/100 (16%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
P++++++ ++ + + E+A++VA + R+ + F +++ CS P + L
Sbjct: 224 PKLQEIVALMEANLEEPIDLDELAVYVAVSRRQLERLF--QKYLHCS---PSRYYLKLRL 278
Query: 68 PLARELMKQN-----------GSVSSKTSLQALREYFGIP 96
AR+L+KQ G VS+ + REYFGIP
Sbjct: 279 IRARQLLKQTPMSIIEVASVCGFVSTPHFSKCYREYFGIP 318
>gi|398864500|ref|ZP_10620034.1| transcriptional regulator containing an amidase domain and an
AraC-type DNA-binding HTH domain [Pseudomonas sp. GM78]
gi|398869999|ref|ZP_10625353.1| transcriptional regulator containing an amidase domain and an
AraC-type DNA-binding HTH domain [Pseudomonas sp. GM74]
gi|398892730|ref|ZP_10645714.1| transcriptional regulator containing an amidase domain and an
AraC-type DNA-binding HTH domain [Pseudomonas sp. GM55]
gi|398912132|ref|ZP_10655828.1| transcriptional regulator containing an amidase domain and an
AraC-type DNA-binding HTH domain [Pseudomonas sp. GM49]
gi|398926989|ref|ZP_10662756.1| transcriptional regulator containing an amidase domain and an
AraC-type DNA-binding HTH domain [Pseudomonas sp. GM48]
gi|398953962|ref|ZP_10675706.1| transcriptional regulator containing an amidase domain and an
AraC-type DNA-binding HTH domain [Pseudomonas sp. GM33]
gi|426411935|ref|YP_007032034.1| AraC family transcriptional regulator [Pseudomonas sp. UW4]
gi|398153264|gb|EJM41769.1| transcriptional regulator containing an amidase domain and an
AraC-type DNA-binding HTH domain [Pseudomonas sp. GM33]
gi|398170242|gb|EJM58193.1| transcriptional regulator containing an amidase domain and an
AraC-type DNA-binding HTH domain [Pseudomonas sp. GM48]
gi|398182684|gb|EJM70191.1| transcriptional regulator containing an amidase domain and an
AraC-type DNA-binding HTH domain [Pseudomonas sp. GM49]
gi|398185013|gb|EJM72434.1| transcriptional regulator containing an amidase domain and an
AraC-type DNA-binding HTH domain [Pseudomonas sp. GM55]
gi|398209832|gb|EJM96496.1| transcriptional regulator containing an amidase domain and an
AraC-type DNA-binding HTH domain [Pseudomonas sp. GM74]
gi|398245099|gb|EJN30629.1| transcriptional regulator containing an amidase domain and an
AraC-type DNA-binding HTH domain [Pseudomonas sp. GM78]
gi|426270152|gb|AFY22229.1| AraC family transcriptional regulator [Pseudomonas sp. UW4]
Length = 367
Score = 35.4 bits (80), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 16/100 (16%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
P++++++ ++ + + E+A++VA + R+ + F +++ CS P + L
Sbjct: 224 PKLQEIVALMEANLEEPIDLDELAVYVAVSRRQLERLF--QKYLHCS---PSRYYLKLRL 278
Query: 68 PLARELMKQN-----------GSVSSKTSLQALREYFGIP 96
AR+L+KQ G VS+ + REYFGIP
Sbjct: 279 IRARQLLKQTPMSIIEVASVCGFVSTPHFSKCYREYFGIP 318
>gi|399012506|ref|ZP_10714826.1| transcriptional regulator containing an amidase domain and an
AraC-type DNA-binding HTH domain [Pseudomonas sp. GM16]
gi|398115339|gb|EJM05123.1| transcriptional regulator containing an amidase domain and an
AraC-type DNA-binding HTH domain [Pseudomonas sp. GM16]
Length = 328
Score = 35.4 bits (80), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 16/100 (16%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
P++++++ ++ + + E+A++VA + R+ + F +++ CS P + L
Sbjct: 185 PKLQEIVALMEANLEEPIDLDELAVYVAVSRRQLERLF--QKYLHCS---PSRYYLKLRL 239
Query: 68 PLARELMKQN-----------GSVSSKTSLQALREYFGIP 96
AR+L+KQ G VS+ + REYFGIP
Sbjct: 240 IRARQLLKQTPMSIIEVASVCGFVSTPHFSKCYREYFGIP 279
>gi|227486439|ref|ZP_03916755.1| DNA-directed DNA polymerase [Anaerococcus lactolyticus ATCC 51172]
gi|227235620|gb|EEI85635.1| DNA-directed DNA polymerase [Anaerococcus lactolyticus ATCC 51172]
Length = 1463
Score = 35.4 bits (80), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 58/133 (43%), Gaps = 21/133 (15%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
P++++++P + + L V N FDV F+ + R + + +LDTL
Sbjct: 511 PKIDEVLPGFLDFCGDSL-------IVGQNTD-FDVGFIRENAKRLGLKF--DPIYLDTL 560
Query: 68 PLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERI------TSD 121
P+AR L G K SL + IP + HRA D + A I ++
Sbjct: 561 PMARALFDDMG----KFSLDKIARKLDIPA-FNHHRASDDARATAQIFIKMYKMIMEEEG 615
Query: 122 LNFTLSDLLKTSF 134
LN + + LKT++
Sbjct: 616 LNLSKINRLKTNY 628
>gi|422629492|ref|ZP_16694696.1| helix-turn-helix, AraC type:ThiJ/PfpI [Pseudomonas syringae pv.
pisi str. 1704B]
gi|330938579|gb|EGH42153.1| helix-turn-helix, AraC type:ThiJ/PfpI [Pseudomonas syringae pv.
pisi str. 1704B]
Length = 367
Score = 35.4 bits (80), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 16/100 (16%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
P++++++ ++ + + E+A++VA + R+ + F +++ CS P + L
Sbjct: 224 PKLQEIVALMEANLEEPIDLDELAVYVAVSRRQLERLF--QKYLHCS---PSRYYLKLRL 278
Query: 68 PLARELMKQN-----------GSVSSKTSLQALREYFGIP 96
AR+L+KQ G VS+ + REYFGIP
Sbjct: 279 IRARQLLKQTPMSIIEVASVCGFVSTPHFSKCYREYFGIP 318
>gi|237802387|ref|ZP_04590848.1| AraC family transcriptional regulator [Pseudomonas syringae pv.
oryzae str. 1_6]
gi|331025244|gb|EGI05300.1| AraC family transcriptional regulator [Pseudomonas syringae pv.
oryzae str. 1_6]
Length = 367
Score = 35.4 bits (80), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 16/100 (16%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
P++++++ ++ + + E+A++VA + R+ + F +++ CS P + L
Sbjct: 224 PKLQEIVALMEANLEEPIDLDELAVYVAVSRRQLERLF--QKYLHCS---PSRYYLKLRL 278
Query: 68 PLARELMKQN-----------GSVSSKTSLQALREYFGIP 96
AR+L+KQ G VS+ + REYFGIP
Sbjct: 279 IRARQLLKQTPMSIIEVASVCGFVSTPHFSKCYREYFGIP 318
>gi|398854096|ref|ZP_10610676.1| transcriptional regulator containing an amidase domain and an
AraC-type DNA-binding HTH domain [Pseudomonas sp. GM80]
gi|398963669|ref|ZP_10679753.1| transcriptional regulator containing an amidase domain and an
AraC-type DNA-binding HTH domain [Pseudomonas sp. GM30]
gi|398989076|ref|ZP_10692583.1| transcriptional regulator containing an amidase domain and an
AraC-type DNA-binding HTH domain [Pseudomonas sp. GM24]
gi|398148416|gb|EJM37095.1| transcriptional regulator containing an amidase domain and an
AraC-type DNA-binding HTH domain [Pseudomonas sp. GM24]
gi|398149445|gb|EJM38094.1| transcriptional regulator containing an amidase domain and an
AraC-type DNA-binding HTH domain [Pseudomonas sp. GM30]
gi|398237228|gb|EJN22986.1| transcriptional regulator containing an amidase domain and an
AraC-type DNA-binding HTH domain [Pseudomonas sp. GM80]
Length = 367
Score = 35.4 bits (80), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 16/100 (16%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
P++++++ ++ + + E+A++VA + R+ + F +++ CS P + L
Sbjct: 224 PKLQEIVALMEANLEEPIDLDELAVYVAVSRRQLERLF--QKYLHCS---PSRYYLKLRL 278
Query: 68 PLARELMKQN-----------GSVSSKTSLQALREYFGIP 96
AR+L+KQ G VS+ + REYFGIP
Sbjct: 279 IRARQLLKQTPMSIIEVASVCGFVSTPHFSKCYREYFGIP 318
>gi|399001329|ref|ZP_10704045.1| transcriptional regulator containing an amidase domain and an
AraC-type DNA-binding HTH domain [Pseudomonas sp. GM18]
gi|398127976|gb|EJM17376.1| transcriptional regulator containing an amidase domain and an
AraC-type DNA-binding HTH domain [Pseudomonas sp. GM18]
Length = 367
Score = 35.4 bits (80), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 16/100 (16%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
P++++++ ++ + + E+A++VA + R+ + F +++ CS P + L
Sbjct: 224 PKLQEIVALMEANLEEPIDLDELAVYVAVSRRQLERLF--QKYLHCS---PSRYYLKLRL 278
Query: 68 PLARELMKQN-----------GSVSSKTSLQALREYFGIP 96
AR+L+KQ G VS+ + REYFGIP
Sbjct: 279 IRARQLLKQTPMSIIEVASVCGFVSTPHFSKCYREYFGIP 318
>gi|413942456|gb|AFW75105.1| hypothetical protein ZEAMMB73_060834 [Zea mays]
Length = 308
Score = 35.4 bits (80), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 7/92 (7%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL-PLARELMKQNGSVSSKTSLQALR 90
++ HN +RFD P + + F+ P+ +D+L LA E ++ G + T L
Sbjct: 90 VWAGHNIQRFDCPRIREAFADIGRPAPEPAGVIDSLNVLAAEFGRRAGDLKMAT----LA 145
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILERITSDL 122
YFGI + HR++ D +L+ + L
Sbjct: 146 TYFGIGKQ--KHRSLDDARMNLEVLKHCATVL 175
>gi|407368172|ref|ZP_11114704.1| transcriptional regulator [Pseudomonas mandelii JR-1]
Length = 367
Score = 35.4 bits (80), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 16/100 (16%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
P++++++ ++ + + E+A++VA + R+ + F +++ CS P + L
Sbjct: 224 PKLQEIVALMEANLEEPIDLDELAVYVAVSRRQLERLF--QKYLHCS---PSRYYLKLRL 278
Query: 68 PLARELMKQN-----------GSVSSKTSLQALREYFGIP 96
AR+L+KQ G VS+ + REYFGIP
Sbjct: 279 IRARQLLKQTPMSIIEVASVCGFVSTPHFSKCYREYFGIP 318
>gi|404402938|ref|ZP_10994522.1| transcriptional regulator [Pseudomonas fuscovaginae UPB0736]
Length = 367
Score = 35.4 bits (80), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 16/100 (16%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
P++++++ ++ + + E+A++VA + R+ + F +++ CS P + L
Sbjct: 224 PKLQEIVALMEANLEEPIDLDELAVYVAVSRRQLERLF--QKYLHCS---PSRYYLKLRL 278
Query: 68 PLARELMKQN-----------GSVSSKTSLQALREYFGIP 96
AR+L+KQ G VS+ + REYFGIP
Sbjct: 279 IRARQLLKQTPMSIIEVASVCGFVSTPHFSKCYREYFGIP 318
>gi|398843295|ref|ZP_10600442.1| transcriptional regulator containing an amidase domain and an
AraC-type DNA-binding HTH domain [Pseudomonas sp. GM102]
gi|398901044|ref|ZP_10649995.1| transcriptional regulator containing an amidase domain and an
AraC-type DNA-binding HTH domain [Pseudomonas sp. GM50]
gi|398103479|gb|EJL93648.1| transcriptional regulator containing an amidase domain and an
AraC-type DNA-binding HTH domain [Pseudomonas sp. GM102]
gi|398180163|gb|EJM67749.1| transcriptional regulator containing an amidase domain and an
AraC-type DNA-binding HTH domain [Pseudomonas sp. GM50]
Length = 367
Score = 35.4 bits (80), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 16/100 (16%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
P++++++ ++ + + E+A++VA + R+ + F +++ CS P + L
Sbjct: 224 PKLQEIVALMEANLEEPIDLDELAVYVAVSRRQLERLF--QKYLHCS---PSRYYLKLRL 278
Query: 68 PLARELMKQN-----------GSVSSKTSLQALREYFGIP 96
AR+L+KQ G VS+ + REYFGIP
Sbjct: 279 IRARQLLKQTPMSIIEVASVCGFVSTPHFSKCYREYFGIP 318
>gi|423711911|ref|ZP_17686216.1| DNA polymerase III, epsilon subunit [Bartonella washoensis Sb944nv]
gi|395412759|gb|EJF79239.1| DNA polymerase III, epsilon subunit [Bartonella washoensis Sb944nv]
Length = 235
Score = 35.4 bits (80), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 48/116 (41%), Gaps = 9/116 (7%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
A +AHNA FD+ FL E R + + +DTL +AR SL L
Sbjct: 84 ATMIAHNAS-FDIGFLNAELGRVNKPLISVDNIIDTLAMARRKFPM-----GPNSLDVLC 137
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILERITSDLNFTLSDLLKTSFRANFDHSKKNKK 146
+ FGI ++HR + A IL + +L +L N D +N+K
Sbjct: 138 KRFGID---NSHRVLHGALLDAEILADVYIELIGGKQGVLGFDNSGNIDEDVQNEK 190
>gi|157147189|ref|YP_001454508.1| DNA polymerase III subunit epsilon [Citrobacter koseri ATCC
BAA-895]
gi|157084394|gb|ABV14072.1| hypothetical protein CKO_02968 [Citrobacter koseri ATCC BAA-895]
Length = 246
Score = 35.4 bits (80), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 17/117 (14%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFL--- 64
P D++ ++Y+ A V HNA FD+ F+ EF++ S IP F
Sbjct: 80 PVFADVVDDFLEYIRG-------AELVIHNAS-FDIGFMDYEFAKLSRGIPKTSEFCKIT 131
Query: 65 DTLPLARELMKQNGSVSSKTSLQALREYFGIP-LEGSAHRAMSDVNSLASILERITS 120
D+L LAR + + SL AL + I + + H A+ D LA + +T
Sbjct: 132 DSLALARRMFP-----GKRNSLDALCSRYEIDNSKRTLHGALLDAQILADVYLAMTG 183
>gi|398859770|ref|ZP_10615437.1| transcriptional regulator containing an amidase domain and an
AraC-type DNA-binding HTH domain [Pseudomonas sp. GM79]
gi|398236106|gb|EJN21904.1| transcriptional regulator containing an amidase domain and an
AraC-type DNA-binding HTH domain [Pseudomonas sp. GM79]
Length = 367
Score = 35.4 bits (80), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 16/100 (16%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
P++++++ ++ + + E+A++VA + R+ + F +++ CS P + L
Sbjct: 224 PKLQEIVALMEANLEEPIDLDELAVYVAVSRRQLERLF--QKYLHCS---PSRYYLKLRL 278
Query: 68 PLARELMKQN-----------GSVSSKTSLQALREYFGIP 96
AR+L+KQ G VS+ + REYFGIP
Sbjct: 279 IRARQLLKQTPMSIIEVASVCGFVSTPHFSKCYREYFGIP 318
>gi|433644481|ref|YP_007277049.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
[Mycobacterium smegmatis JS623]
gi|433301201|gb|AGB27019.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
[Mycobacterium smegmatis JS623]
Length = 195
Score = 35.4 bits (80), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 46/113 (40%), Gaps = 24/113 (21%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
PR D+ + +N R I VAHNA FD FLA E RC TL
Sbjct: 69 PRYADVAARLASLMNGR-------ILVAHNAA-FDYGFLAAESHRCGA----------TL 110
Query: 68 PLARELMK-----QNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASIL 115
P+A L SL +L Y+ +P + H A+ D LA+IL
Sbjct: 111 PVAEVLCSLELAGLLDLGLDSLSLASLAAYWNVP-QARPHDALDDARVLAAIL 162
>gi|399008966|ref|ZP_10711414.1| DNA polymerase III, alpha subunit (gram-positive type) [Pseudomonas
sp. GM17]
gi|398114266|gb|EJM04097.1| DNA polymerase III, alpha subunit (gram-positive type) [Pseudomonas
sp. GM17]
Length = 203
Score = 35.4 bits (80), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 39/90 (43%), Gaps = 7/90 (7%)
Query: 33 FVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREY 92
+AHNA FD F E R N F +L LAR LM + L L +
Sbjct: 86 LLAHNAA-FDQKFWDYELGRIKRTRLQN--FACSLLLARRLM----PAAPNHKLGTLTSF 138
Query: 93 FGIPLEGSAHRAMSDVNSLASILERITSDL 122
+P G AHRAM+D A++ + +L
Sbjct: 139 ASLPHTGQAHRAMADAEMAANLTAHLALEL 168
>gi|422643438|ref|ZP_16706577.1| AraC family transcriptional regulator [Pseudomonas syringae pv.
maculicola str. ES4326]
gi|330956991|gb|EGH57251.1| AraC family transcriptional regulator [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 367
Score = 35.4 bits (80), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 16/100 (16%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
P++++++ ++ + + E+A++VA + R+ + F +++ CS P + L
Sbjct: 224 PKLQEIVALMEANLEEPIDLDELAVYVAVSRRQLERLF--QKYLHCS---PSRYYLKLRL 278
Query: 68 PLARELMKQN-----------GSVSSKTSLQALREYFGIP 96
AR+L+KQ G VS+ + REYFGIP
Sbjct: 279 IRARQLLKQTPMSIIEVASVCGFVSTPHFSKCYREYFGIP 318
>gi|261879422|ref|ZP_06005849.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella
bergensis DSM 17361]
gi|270333990|gb|EFA44776.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella
bergensis DSM 17361]
Length = 287
Score = 35.4 bits (80), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 10/87 (11%)
Query: 33 FVAHNARRFDVPFLAKEFSRCSMNIP-DNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
F N+ RFDVP LA+EF R ++ R +D + ++ +N + A R
Sbjct: 90 FAGFNSNRFDVPMLAEEFLRAGVDFDFQRCRLIDAQNIFHKMEPRNLAA-------AYRF 142
Query: 92 YFGIPLEG--SAHRAMSDVNSLASILE 116
Y G +E AHRA D + +L+
Sbjct: 143 YTGNKMEDDFQAHRADEDTEATYRVLQ 169
>gi|426411633|ref|YP_007031732.1| exonuclease [Pseudomonas sp. UW4]
gi|426269850|gb|AFY21927.1| exonuclease [Pseudomonas sp. UW4]
Length = 201
Score = 35.4 bits (80), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 42/90 (46%), Gaps = 7/90 (7%)
Query: 33 FVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREY 92
+AHNA FD F E R N F +L LAR LM G+ + K L L +
Sbjct: 86 LLAHNAA-FDQKFWDFELGRIKRTRLQN--FACSLLLARRLMP--GAPNHK--LGTLTTF 138
Query: 93 FGIPLEGSAHRAMSDVNSLASILERITSDL 122
+P G AHRAM+D A++ + +L
Sbjct: 139 ANLPHTGKAHRAMADAEMAANLTAHLEEEL 168
>gi|395785268|ref|ZP_10465000.1| DNA polymerase III, epsilon subunit [Bartonella tamiae Th239]
gi|423717833|ref|ZP_17692023.1| DNA polymerase III, epsilon subunit [Bartonella tamiae Th307]
gi|395424815|gb|EJF90986.1| DNA polymerase III, epsilon subunit [Bartonella tamiae Th239]
gi|395427233|gb|EJF93349.1| DNA polymerase III, epsilon subunit [Bartonella tamiae Th307]
Length = 234
Score = 35.4 bits (80), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 44/101 (43%), Gaps = 7/101 (6%)
Query: 15 PIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELM 74
PI + + L E A +AHNA FD+ FL E R + R LDTL +AR
Sbjct: 68 PIFDEIADDFLDFIEGATLIAHNAS-FDLGFLNAELERVKKPLISVDRILDTLAMARRKY 126
Query: 75 KQNGSVSSKTSLQALREYFGIP-LEGSAHRAMSDVNSLASI 114
SL AL + FGI + H A+ D LA +
Sbjct: 127 PM-----GPNSLDALCKRFGIDNSHRTLHGALLDSEILADV 162
>gi|424925350|ref|ZP_18348711.1| AraC [Pseudomonas fluorescens R124]
gi|404306510|gb|EJZ60472.1| AraC [Pseudomonas fluorescens R124]
Length = 382
Score = 35.4 bits (80), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 16/100 (16%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
P++++++ ++ + + E+A++VA + R+ + F +++ CS P + L
Sbjct: 224 PKLQEIVALMEANLEEPIDLDELAVYVAVSRRQLERLF--QKYLHCS---PSRYYLKLRL 278
Query: 68 PLARELMKQN-----------GSVSSKTSLQALREYFGIP 96
AR+L+KQ G VS+ + REYFGIP
Sbjct: 279 IRARQLLKQTPMSIIEVASVCGFVSTPHFSKCYREYFGIP 318
>gi|398935714|ref|ZP_10666618.1| transcriptional regulator containing an amidase domain and an
AraC-type DNA-binding HTH domain [Pseudomonas sp.
GM41(2012)]
gi|398169169|gb|EJM57159.1| transcriptional regulator containing an amidase domain and an
AraC-type DNA-binding HTH domain [Pseudomonas sp.
GM41(2012)]
Length = 151
Score = 35.0 bits (79), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 16/100 (16%)
Query: 8 PRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTL 67
PR+++++ ++ + + E+A+FV+ + R+ + F +++ CS P + L
Sbjct: 8 PRLQEIVALMDANLEEPIDLDELAVFVSVSRRQLERLF--QKYLHCS---PSRYYLKLRL 62
Query: 68 PLARELMKQN-----------GSVSSKTSLQALREYFGIP 96
AR+L+KQ G VS+ + REY+GIP
Sbjct: 63 IRARQLLKQTPMSIIEVASVCGFVSTPYFSKCYREYYGIP 102
>gi|395788137|ref|ZP_10467713.1| DNA polymerase III, epsilon subunit [Bartonella birtlesii LL-WM9]
gi|395409919|gb|EJF76504.1| DNA polymerase III, epsilon subunit [Bartonella birtlesii LL-WM9]
Length = 235
Score = 35.0 bits (79), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 48/116 (41%), Gaps = 9/116 (7%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
A VAHNA FD+ FL E R + + LDTL +AR SL L
Sbjct: 84 ATMVAHNAS-FDIGFLNAELGRANRPLISVDNILDTLAMARRKFPM-----GPNSLDVLC 137
Query: 91 EYFGIPLEGSAHRAMSDVNSLASILERITSDLNFTLSDLLKTSFRANFDHSKKNKK 146
+ FGI ++HR + A IL + +L +L + + D KN K
Sbjct: 138 KRFGID---NSHRVLHGALLDAEILADVYIELIGGKQGVLGFNKKQGDDEDSKNDK 190
>gi|254502882|ref|ZP_05115033.1| DNA polymerase III, epsilon subunit [Labrenzia alexandrii DFL-11]
gi|222438953|gb|EEE45632.1| DNA polymerase III, epsilon subunit [Labrenzia alexandrii DFL-11]
Length = 239
Score = 35.0 bits (79), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 39/92 (42%), Gaps = 8/92 (8%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
V HNA FD+ F+ E RC N + +DTL +AR S SL AL
Sbjct: 84 GTLVIHNAA-FDMGFINMELERCGRRTISNTQVIDTLEIARRKHP-----SGPNSLDALC 137
Query: 91 EYFGIPLEGSA-HRAMSDVNSLASI-LERITS 120
+GI H A+ D LA + LE I
Sbjct: 138 SRYGIDNSKRVKHGALLDAEILAEVYLEMIGG 169
>gi|385332784|ref|YP_005886735.1| DNA polymerase III subunit epsilon [Marinobacter adhaerens HP15]
gi|311695934|gb|ADP98807.1| DNA polymerase III, epsilon subunit [Marinobacter adhaerens HP15]
Length = 486
Score = 35.0 bits (79), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 8/90 (8%)
Query: 32 IFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALRE 91
+FVAHNAR FD F+ EF R + + L T+ L+R L + + ++ AL
Sbjct: 93 VFVAHNAR-FDYGFIKSEFRRLGRLF--SAKVLCTVKLSRRLYPE----FRRHNMDALIA 145
Query: 92 YFGIPLEGSAHRAMSDVNSLASILERITSD 121
G+ HRAM DV+++ + E S+
Sbjct: 146 RHGLA-RVQRHRAMGDVSAMLAFFEHARSE 174
>gi|116494067|ref|YP_805801.1| DNA polymerase III subunit epsilon-like 3'-5' exonuclease
[Lactobacillus casei ATCC 334]
gi|191637384|ref|YP_001986550.1| DNA polymerase III subunit alpha [Lactobacillus casei BL23]
gi|227533296|ref|ZP_03963345.1| DNA polymerase III, epsilon subunit like 3'-5' exonuclease
[Lactobacillus paracasei subsp. paracasei ATCC 25302]
gi|366088189|ref|ZP_09454674.1| DNA polymerase III subunit alpha [Lactobacillus zeae KCTC 3804]
gi|385819101|ref|YP_005855488.1| DNA polymerase III subunit alpha [Lactobacillus casei LC2W]
gi|385822267|ref|YP_005858609.1| DNA polymerase III subunit alpha [Lactobacillus casei BD-II]
gi|409996238|ref|YP_006750639.1| DNA polymerase III subunit epsilon-like 3'-5' exonuclease
[Lactobacillus casei W56]
gi|417986030|ref|ZP_12626605.1| exonuclease [Lactobacillus casei 32G]
gi|417995223|ref|ZP_12635524.1| exonuclease [Lactobacillus casei M36]
gi|417998281|ref|ZP_12638508.1| exonuclease [Lactobacillus casei T71499]
gi|418004205|ref|ZP_12644243.1| exonuclease [Lactobacillus casei UW1]
gi|418010025|ref|ZP_12649810.1| exonuclease [Lactobacillus casei Lc-10]
gi|418012735|ref|ZP_12652425.1| exonuclease [Lactobacillus casei Lpc-37]
gi|116104217|gb|ABJ69359.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
[Lactobacillus casei ATCC 334]
gi|190711686|emb|CAQ65692.1| DNA polymerase III, alpha subunit [Lactobacillus casei BL23]
gi|227189092|gb|EEI69159.1| DNA polymerase III, epsilon subunit like 3'-5' exonuclease
[Lactobacillus paracasei subsp. paracasei ATCC 25302]
gi|327381428|gb|AEA52904.1| DNA polymerase III alpha subunit [Lactobacillus casei LC2W]
gi|327384594|gb|AEA56068.1| DNA polymerase III alpha subunit [Lactobacillus casei BD-II]
gi|406357250|emb|CCK21520.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
[Lactobacillus casei W56]
gi|410526786|gb|EKQ01664.1| exonuclease [Lactobacillus casei 32G]
gi|410538251|gb|EKQ12806.1| exonuclease [Lactobacillus casei M36]
gi|410541561|gb|EKQ16040.1| exonuclease [Lactobacillus casei T71499]
gi|410550459|gb|EKQ24572.1| exonuclease [Lactobacillus casei UW1]
gi|410554716|gb|EKQ28686.1| exonuclease [Lactobacillus casei Lc-10]
gi|410556558|gb|EKQ30443.1| exonuclease [Lactobacillus casei Lpc-37]
Length = 172
Score = 35.0 bits (79), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 42 DVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALREYFGIPLEGSA 101
D + + F + S IP NW+F+D +++++ S ++ LQ L GIP+
Sbjct: 93 DAGRIRETFKKGSHGIPKNWKFIDIA----DIVEKRYSFNATPPLQGLANVLGIPVN-RT 147
Query: 102 HRAMSD 107
H A+ D
Sbjct: 148 HNALDD 153
>gi|443488941|ref|YP_007367088.1| DNA polymerase III [Mycobacterium liflandii 128FXT]
gi|442581438|gb|AGC60581.1| DNA polymerase III [Mycobacterium liflandii 128FXT]
Length = 406
Score = 35.0 bits (79), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 15/111 (13%)
Query: 7 VPRMEDLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNW-RFLD 65
P E +IP +++ + R +FVAHN FD FL E R + + + W L
Sbjct: 65 APAFEAIIPRLLRDLRGR-------VFVAHNVN-FDQRFLLAELRRAGVPLDNPWLTGLC 116
Query: 66 TLPLARELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILE 116
T+ A L+ ++ L + G+ L AHRA++D + AS+L+
Sbjct: 117 TMRWAGRLLP-----AASRKLPDCCDAAGVVLT-DAHRALADARATASLLK 161
>gi|302381472|ref|YP_003817295.1| DNA polymerase III subunit epsilon [Brevundimonas subvibrioides
ATCC 15264]
gi|302192100|gb|ADK99671.1| DNA polymerase III, epsilon subunit [Brevundimonas subvibrioides
ATCC 15264]
Length = 247
Score = 35.0 bits (79), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 7/85 (8%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQALR 90
A +AHNA+ FD F+ E RC + R++DTL LA++ SL AL
Sbjct: 85 APVIAHNAQ-FDRNFIDHECGRCGHPLLHETRWIDTLQLAQKRFP-----GMANSLDALC 138
Query: 91 EYFGIPL-EGSAHRAMSDVNSLASI 114
+ + I L + + H A+ D LA +
Sbjct: 139 KRYKISLVDRTLHGALIDARLLAEV 163
>gi|423714747|ref|ZP_17688971.1| DNA polymerase III, epsilon subunit [Bartonella elizabethae F9251]
gi|395430966|gb|EJF96994.1| DNA polymerase III, epsilon subunit [Bartonella elizabethae F9251]
Length = 235
Score = 35.0 bits (79), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 56/135 (41%), Gaps = 16/135 (11%)
Query: 12 DLIPIVIKYVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLAR 71
D++ ++++N A +AHNA FD+ F+ E R + + LDTL +AR
Sbjct: 72 DIVDEFLEFING-------ATMIAHNAS-FDIGFINAELKRVNKPLISVDNILDTLAMAR 123
Query: 72 ELMKQNGSVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILERITSDLNFTLSDLLK 131
SL L + FGI ++HR + A IL + +L +L
Sbjct: 124 RKFPM-----GPNSLDILCKRFGID---NSHRVLHGALLDAEILADVYIELIGGKQGVLG 175
Query: 132 TSFRANFDHSKKNKK 146
R N D +N K
Sbjct: 176 FDNRRNVDEHIQNDK 190
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.135 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,066,086,596
Number of Sequences: 23463169
Number of extensions: 73157931
Number of successful extensions: 206732
Number of sequences better than 100.0: 955
Number of HSP's better than 100.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 888
Number of HSP's that attempted gapping in prelim test: 206518
Number of HSP's gapped (non-prelim): 961
length of query: 146
length of database: 8,064,228,071
effective HSP length: 110
effective length of query: 36
effective length of database: 9,778,246,777
effective search space: 352016883972
effective search space used: 352016883972
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 71 (32.0 bits)