BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037872
(146 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CG7|A Chain A, Crystal Structure Of Cell-Death Related Nuclease 4 (Crn-4)
pdb|3CG7|B Chain B, Crystal Structure Of Cell-Death Related Nuclease 4 (Crn-4)
pdb|3CM5|A Chain A, Crystal Structure Of Cell-Death Related Nuclease 4 (Crn-4)
Bound With Mn
pdb|3CM5|B Chain B, Crystal Structure Of Cell-Death Related Nuclease 4 (Crn-4)
Bound With Mn
pdb|3CM6|A Chain A, Crystal Structure Of Cell-Death Related Nuclease 4 (Crn-4)
Bound With Er
pdb|3CM6|B Chain B, Crystal Structure Of Cell-Death Related Nuclease 4 (Crn-4)
Bound With Er
Length = 308
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 79 SVSSKTSLQALREYFGIPLEGSAHRAMSDVNSLASILER-ITSDLNFTLSDLLKTS 133
+S+ T++ + EY+ +P G AH AM D ++A+IL+R I T+++LL
Sbjct: 166 ELSATTNIGKMNEYYDLPTIGRAHDAMDDCLNIATILQRMINMGAKVTVNELLTCC 221
>pdb|1Y97|A Chain A, The Human Trex2 3' Exonuclease Structure Suggests A
Mechanism For Efficient Non-Processive Dna Catalysis
pdb|1Y97|B Chain B, The Human Trex2 3' Exonuclease Structure Suggests A
Mechanism For Efficient Non-Processive Dna Catalysis
Length = 238
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 8/97 (8%)
Query: 20 YVNSRLGPGEIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGS 79
+++ + GP VAHN +D P L E R +P + LDTLP R L + +
Sbjct: 106 FLSRQAGP---ICLVAHNGFDYDFPLLCAELRRLGARLPRDTVCLDTLPALRGLDRAHSH 162
Query: 80 VS-----SKTSLQALREYFGIPLEGSAHRAMSDVNSL 111
+ SL +L + +AH A DV++L
Sbjct: 163 GTRARGRQGYSLGSLFHRYFRAEPSAAHSAEGDVHTL 199
>pdb|3MXJ|B Chain B, Crystal Structure Of The Mtrex1 Apoprotein
pdb|3MXJ|A Chain A, Crystal Structure Of The Mtrex1 Apoprotein
Length = 242
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 9/93 (9%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQAL- 89
VAHN R+D P L E +R S P + F A + ++Q S S S ++
Sbjct: 119 CCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQASSPSGNGSRKSYS 178
Query: 90 ------REYFGIPLEGSAHRAMSDVNSLASILE 116
R Y+ P + +H A DV +L SI +
Sbjct: 179 LGSIYTRLYWQAPTD--SHTAEGDVLTLLSICQ 209
>pdb|3MXI|B Chain B, Trex1 3' Exonuclease D18n Familial Chilblain Lupus Mutant
pdb|3MXI|A Chain A, Trex1 3' Exonuclease D18n Familial Chilblain Lupus Mutant
Length = 242
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 9/93 (9%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQAL- 89
VAHN R+D P L E +R S P + F A + ++Q S S S ++
Sbjct: 119 CCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQASSPSGNGSRKSYS 178
Query: 90 ------REYFGIPLEGSAHRAMSDVNSLASILE 116
R Y+ P + +H A DV +L SI +
Sbjct: 179 LGSIYTRLYWQAPTD--SHTAEGDVLTLLSICQ 209
>pdb|2IOC|B Chain B, The Crystal Structure Of Trex1 Explains The 3' Nucleotide
Specificity And Reveals A Polyproline Ii Helix For
Protein Partenring
pdb|2IOC|A Chain A, The Crystal Structure Of Trex1 Explains The 3' Nucleotide
Specificity And Reveals A Polyproline Ii Helix For
Protein Partenring
Length = 242
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 9/93 (9%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQA-- 88
VAHN R+D P L E +R S P + F A + ++Q S S S ++
Sbjct: 119 CCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQASSPSGNGSRKSYS 178
Query: 89 -----LREYFGIPLEGSAHRAMSDVNSLASILE 116
R Y+ P + +H A DV +L SI +
Sbjct: 179 LGSIYTRLYWQAPTD--SHTAEGDVLTLLSICQ 209
>pdb|2O4G|A Chain A, Structure Of Trex1 In Complex With A Nucleotide
pdb|2O4G|B Chain B, Structure Of Trex1 In Complex With A Nucleotide
pdb|2O4G|C Chain C, Structure Of Trex1 In Complex With A Nucleotide
pdb|2O4G|D Chain D, Structure Of Trex1 In Complex With A Nucleotide
pdb|3B6O|A Chain A, Structure Of Trex1 In Complex With A Nucleotide And An
Inhibitor Ion (Lithium)
pdb|3B6O|B Chain B, Structure Of Trex1 In Complex With A Nucleotide And An
Inhibitor Ion (Lithium)
pdb|3B6O|C Chain C, Structure Of Trex1 In Complex With A Nucleotide And An
Inhibitor Ion (Lithium)
pdb|3B6O|D Chain D, Structure Of Trex1 In Complex With A Nucleotide And An
Inhibitor Ion (Lithium)
pdb|3B6P|A Chain A, Structure Of Trex1 In Complex With A Nucleotide And
Inhibitor Ions (Sodium And Zinc)
pdb|3B6P|B Chain B, Structure Of Trex1 In Complex With A Nucleotide And
Inhibitor Ions (Sodium And Zinc)
pdb|3B6P|C Chain C, Structure Of Trex1 In Complex With A Nucleotide And
Inhibitor Ions (Sodium And Zinc)
pdb|3B6P|D Chain D, Structure Of Trex1 In Complex With A Nucleotide And
Inhibitor Ions (Sodium And Zinc)
Length = 247
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 9/93 (9%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQAL- 89
VAHN R+D P L E +R S P + F A + ++Q S S S ++
Sbjct: 121 CCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQASSPSGNGSRKSYS 180
Query: 90 ------REYFGIPLEGSAHRAMSDVNSLASILE 116
R Y+ P + +H A DV +L SI +
Sbjct: 181 LGSIYTRLYWQAPTD--SHTAEGDVLTLLSICQ 211
>pdb|2OA8|A Chain A, Crystal Structure Of Mtrex1 With Ssdna
pdb|2OA8|B Chain B, Crystal Structure Of Mtrex1 With Ssdna
Length = 233
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 9/93 (9%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQAL- 89
VAHN R+D P L E +R S P + F A + ++Q S S S ++
Sbjct: 116 CCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQASSPSGNGSRKSYS 175
Query: 90 ------REYFGIPLEGSAHRAMSDVNSLASILE 116
R Y+ P + +H A DV +L SI +
Sbjct: 176 LGSIYTRLYWQAPTD--SHTAEGDVLTLLSICQ 206
>pdb|3U6F|B Chain B, Mouse Trex1 D200n Mutant
pdb|3U6F|A Chain A, Mouse Trex1 D200n Mutant
Length = 314
Score = 34.3 bits (77), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 9/95 (9%)
Query: 29 EIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQA 88
+ VAHN R+D P L E +R S P + F A + ++Q S S S ++
Sbjct: 117 QPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQASSPSGNGSRKS 176
Query: 89 -------LREYFGIPLEGSAHRAMSDVNSLASILE 116
R Y+ P + +H A +V +L SI +
Sbjct: 177 YSLGSIYTRLYWQAPTD--SHTAEGNVLTLLSICQ 209
>pdb|3U3Y|B Chain B, Mouse Trex1 D200h Mutant
pdb|3U3Y|A Chain A, Mouse Trex1 D200h Mutant
Length = 314
Score = 33.5 bits (75), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 9/95 (9%)
Query: 29 EIAIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQA 88
+ VAHN R+D P L E +R S P + F A + ++Q S S S ++
Sbjct: 117 QPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQASSPSGNGSRKS 176
Query: 89 -------LREYFGIPLEGSAHRAMSDVNSLASILE 116
R Y+ P + +H A V +L SI +
Sbjct: 177 YSLGSIYTRLYWQAPTD--SHTAEGHVLTLLSICQ 209
>pdb|3MXM|B Chain B, Trex1 3' Exonuclease V201d Aicardi-Goutieres Syndrome
Mutant
pdb|3MXM|A Chain A, Trex1 3' Exonuclease V201d Aicardi-Goutieres Syndrome
Mutant
Length = 242
Score = 33.5 bits (75), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 9/93 (9%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQA-- 88
VAHN R+D P L E +R S P + F A + ++Q S S S ++
Sbjct: 119 CCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQASSPSGNGSRKSYS 178
Query: 89 -----LREYFGIPLEGSAHRAMSDVNSLASILE 116
R Y+ P + +H A D +L SI +
Sbjct: 179 LGSIYTRLYWQAPTD--SHTAEGDDLTLLSICQ 209
>pdb|2O4I|A Chain A, Structure Of Trex1 In Complex With Dna
pdb|2O4I|B Chain B, Structure Of Trex1 In Complex With Dna
Length = 247
Score = 33.1 bits (74), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 9/93 (9%)
Query: 31 AIFVAHNARRFDVPFLAKEFSRCSMNIPDNWRFLDTLPLARELMKQNGSVSSKTSLQA-- 88
VAHN R+D P L E +R S P + F A + ++Q S S S ++
Sbjct: 121 CCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQASSPSGNGSRKSYS 180
Query: 89 -----LREYFGIPLEGSAHRAMSDVNSLASILE 116
R Y+ P + + A DV +L SI +
Sbjct: 181 LGSIYTRLYWQAPTDSAT--AEGDVLTLLSICQ 211
>pdb|3GWA|A Chain A, 1.6 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
pdb|3GWA|B Chain B, 1.6 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
pdb|3GWE|A Chain A, 2.1 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
pdb|3GWE|B Chain B, 2.1 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
Length = 365
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 17/76 (22%)
Query: 30 IAIFVAHNARRFDVPFLAKEFSRCSMNIPDNW----------RFLDTLPLARELMKQNGS 79
I FV H A RF + L K+ M IP++ TLPLA E M+ NG+
Sbjct: 286 IDCFVLHQANRFMLDALRKK-----MKIPEHKFPVLMEHCGNTVSSTLPLALETMRANGT 340
Query: 80 VSSKTSLQALREYFGI 95
++ L L FG+
Sbjct: 341 LARGMRLMLLG--FGV 354
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,885,713
Number of Sequences: 62578
Number of extensions: 134425
Number of successful extensions: 362
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 351
Number of HSP's gapped (non-prelim): 12
length of query: 146
length of database: 14,973,337
effective HSP length: 90
effective length of query: 56
effective length of database: 9,341,317
effective search space: 523113752
effective search space used: 523113752
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)